BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 009066
         (545 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|359497567|ref|XP_002265980.2| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like, partial [Vitis vinifera]
          Length = 599

 Score =  843 bits (2177), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/571 (70%), Positives = 471/571 (82%), Gaps = 28/571 (4%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M VKTTV WNS+LAG++ +RGK+K A++LFD+IP+PD+ SYNIML+C L N+D V +A  
Sbjct: 31  MTVKTTVTWNSMLAGYSNRRGKIKVARQLFDRIPEPDIFSYNIMLACYLHNAD-VESARL 89

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
           FF ++P+KDTASWNTMISGF Q   M +AR+LFL MP +NSVSW+AMISGY+E G LD A
Sbjct: 90  FFDQMPVKDTASWNTMISGFSQNGMMDQARELFLVMPVRNSVSWNAMISGYVESGDLDLA 149

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFG--------------------------YVENSWAE 154
            +LF+VAPV+SVVAWTAMI+G+MKFG                          Y+EN  AE
Sbjct: 150 KQLFEVAPVRSVVAWTAMITGFMKFGKIELAEKYFEEMPMKNLVTWNAMIAGYIENCQAE 209

Query: 155 DGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLI 214
           +GLKL + M+  G RPN SSLSSVLLGCS+LS+L+LGKQVHQL+ KSP+  + TA T L+
Sbjct: 210 NGLKLFKRMVESGFRPNPSSLSSVLLGCSNLSALKLGKQVHQLICKSPVSWNITAGTSLL 269

Query: 215 SMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSI 274
           SMYCKCGDLEDA KLFL + +KDVVTWNAMISGYAQHG GEKAL LFDKM+DEGMKPD I
Sbjct: 270 SMYCKCGDLEDAWKLFLVMPQKDVVTWNAMISGYAQHGAGEKALYLFDKMRDEGMKPDWI 329

Query: 275 TFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKK 334
           TFVA+L ACNHAG VDLGI+YF+SMV DYG+ AKPDHYTC+VDLLGR GKLVEAVDLIKK
Sbjct: 330 TFVAVLSACNHAGFVDLGIEYFNSMVRDYGVEAKPDHYTCVVDLLGRGGKLVEAVDLIKK 389

Query: 335 MPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDD 394
           MPFKP  AIFGTLL ACR+HK L+LAEFAA NL NL+P +AAG YVQLAN+YAAM +WD 
Sbjct: 390 MPFKPHSAIFGTLLGACRIHKNLELAEFAAKNLLNLDPESAAG-YVQLANVYAAMNRWDH 448

Query: 395 VARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGY 454
           VA +R SMK+N V+K PGYSWIEV +VVHEFRSGDR+HPEL  IHEKL ELE++M+LAGY
Sbjct: 449 VAMVRRSMKDNKVIKTPGYSWIEVKSVVHEFRSGDRIHPELAFIHEKLNELERKMRLAGY 508

Query: 455 VPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKY 514
           VPDLE+ALH VGEE K+Q+LL HSEKLAIA+GLI++PLGTPIRVFKNLRVCGDCH ATKY
Sbjct: 509 VPDLEYALHDVGEEQKKQILLRHSEKLAIAYGLIRMPLGTPIRVFKNLRVCGDCHSATKY 568

Query: 515 ISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           ISAIE R IIVRDTTRFHHF+ G CSCGDYW
Sbjct: 569 ISAIEGRVIIVRDTTRFHHFRQGECSCGDYW 599



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 70/294 (23%), Positives = 132/294 (44%), Gaps = 61/294 (20%)

Query: 100 NSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGY----------------- 142
           N +S + +I+ +I  G L+ A+ +F+   VK+ V W +M++GY                 
Sbjct: 4   NVISSNRVITNHIRSGDLNSALRVFESMTVKTTVTWNSMLAGYSNRRGKIKVARQLFDRI 63

Query: 143 ----------MKFGYVEN-------------------SW-------AEDGL--KLLRMMI 164
                     M   Y+ N                   SW       +++G+  +   + +
Sbjct: 64  PEPDIFSYNIMLACYLHNADVESARLFFDQMPVKDTASWNTMISGFSQNGMMDQARELFL 123

Query: 165 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 224
            + +R + S  ++++ G      L L KQ    +F+    +   A T +I+ + K G +E
Sbjct: 124 VMPVRNSVS-WNAMISGYVESGDLDLAKQ----LFEVAPVRSVVAWTAMITGFMKFGKIE 178

Query: 225 DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 284
            A K F E+  K++VTWNAMI+GY ++ + E  L+LF +M + G +P+  +  ++LL C+
Sbjct: 179 LAEKYFEEMPMKNLVTWNAMIAGYIENCQAENGLKLFKRMVESGFRPNPSSLSSVLLGCS 238

Query: 285 HAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 338
           +   + LG Q    ++    ++      T ++ +  + G L +A  L   MP K
Sbjct: 239 NLSALKLGKQ-VHQLICKSPVSWNITAGTSLLSMYCKCGDLEDAWKLFLVMPQK 291


>gi|224071204|ref|XP_002303374.1| predicted protein [Populus trichocarpa]
 gi|222840806|gb|EEE78353.1| predicted protein [Populus trichocarpa]
          Length = 569

 Score =  821 bits (2120), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 404/571 (70%), Positives = 465/571 (81%), Gaps = 28/571 (4%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M +KTTV WNSVLAG +K+RGKLK+AQELF KIP+PD VSYN MLSC + NS+ +  A  
Sbjct: 1   MTLKTTVTWNSVLAGMSKKRGKLKEAQELFVKIPEPDAVSYNTMLSCYVRNSN-MERAQA 59

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
           FF+ +PIKDT SWNTMI+GF Q + M KARDLFL MP KN V+W+AMISGY+ECG LD A
Sbjct: 60  FFEDMPIKDTPSWNTMITGFAQNQQMDKARDLFLIMPTKNVVTWNAMISGYVECGDLDSA 119

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFG--------------------------YVENSWAE 154
           ++LF+ AP KSVVAWTAMI+GYMK G                          Y+EN  AE
Sbjct: 120 LKLFEKAPFKSVVAWTAMITGYMKLGRIGLAERLFEKMPEKNLVTWNAMIAGYIENHRAE 179

Query: 155 DGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLI 214
           DG+KL R M+G GI+PN+S+LSS LLGCS LS+LQLG+QVHQLV KSPLC DTTA T LI
Sbjct: 180 DGVKLFRTMVGFGIQPNSSTLSSALLGCSELSALQLGRQVHQLVCKSPLCDDTTAGTSLI 239

Query: 215 SMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSI 274
           SMYCKCG LED  KLF+++ R+DVVTWNAMISGYAQHG+G+KAL LFD+M ++GMKPD I
Sbjct: 240 SMYCKCGVLEDGWKLFVQVPRRDVVTWNAMISGYAQHGEGKKALGLFDEMIEKGMKPDWI 299

Query: 275 TFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKK 334
           TFVA+L+ACNHAG  DLG++YF SM  DYG+ AKPDHYTCMVDLLGRAGKLVEAVDLI+K
Sbjct: 300 TFVAVLMACNHAGFTDLGVKYFHSMAKDYGLVAKPDHYTCMVDLLGRAGKLVEAVDLIEK 359

Query: 335 MPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDD 394
           MPFKP  A+FGTLL ACR+HK  ++AEFA+  L NL+PA+A G YVQLAN+YAA K+WD 
Sbjct: 360 MPFKPHAAVFGTLLGACRIHKNTEMAEFASQKLLNLDPASATG-YVQLANVYAATKRWDH 418

Query: 395 VARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGY 454
           VAR+R SMK   VVK PGYSWIEV ++ H+FRSGD+ HPEL SIH KLKELEK+MKLAGY
Sbjct: 419 VARVRKSMKSCKVVKTPGYSWIEVKSMAHQFRSGDKFHPELASIHGKLKELEKKMKLAGY 478

Query: 455 VPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKY 514
           VPDLEFALH VGEE KEQLLL+HSEKLAIA+GLIK+P GTPIRVFKNLRVCGDCHRA KY
Sbjct: 479 VPDLEFALHDVGEEQKEQLLLWHSEKLAIAYGLIKLPPGTPIRVFKNLRVCGDCHRAIKY 538

Query: 515 ISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           IS IE+REIIVRDTTRFHHFKDG CSC DYW
Sbjct: 539 ISQIERREIIVRDTTRFHHFKDGHCSCADYW 569


>gi|356507248|ref|XP_003522381.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Glycine max]
          Length = 635

 Score =  815 bits (2106), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/571 (69%), Positives = 453/571 (79%), Gaps = 28/571 (4%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M VK+TV WNS+LA FAK+ G  + A++LF+KIPQP+ VSYNIML+C   +   V  A  
Sbjct: 67  MKVKSTVTWNSILAAFAKKPGHFEYARQLFEKIPQPNTVSYNIMLAC-HWHHLGVHDARG 125

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
           FF  +P+KD ASWNTMIS   Q   M +AR LF AMPEKN VSWSAM+SGY+ CG LD A
Sbjct: 126 FFDSMPLKDVASWNTMISALAQVGLMGEARRLFSAMPEKNCVSWSAMVSGYVACGDLDAA 185

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFG--------------------------YVENSWAE 154
           VE F  AP++SV+ WTAMI+GYMKFG                          YVEN  AE
Sbjct: 186 VECFYAAPMRSVITWTAMITGYMKFGRVELAERLFQEMSMRTLVTWNAMIAGYVENGRAE 245

Query: 155 DGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLI 214
           DGL+L R M+  G++PNA SL+SVLLGCS+LS+LQLGKQVHQLV K PL  DTTA T L+
Sbjct: 246 DGLRLFRTMLETGVKPNALSLTSVLLGCSNLSALQLGKQVHQLVCKCPLSSDTTAGTSLV 305

Query: 215 SMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSI 274
           SMY KCGDL+DA +LF++I RKDVV WNAMISGYAQHG G+KALRLFD+MK EG+KPD I
Sbjct: 306 SMYSKCGDLKDAWELFIQIPRKDVVCWNAMISGYAQHGAGKKALRLFDEMKKEGLKPDWI 365

Query: 275 TFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKK 334
           TFVA+LLACNHAGLVDLG+QYF++M  D+GI  KP+HY CMVDLLGRAGKL EAVDLIK 
Sbjct: 366 TFVAVLLACNHAGLVDLGVQYFNTMRRDFGIETKPEHYACMVDLLGRAGKLSEAVDLIKS 425

Query: 335 MPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDD 394
           MPFKP PAI+GTLL ACR+HK L+LAEFAA NL  L+P  A G YVQLAN+YAA  +WD 
Sbjct: 426 MPFKPHPAIYGTLLGACRIHKNLNLAEFAAKNLLELDPTIATG-YVQLANVYAAQNRWDH 484

Query: 395 VARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGY 454
           VA IR SMK+NNVVK+PGYSWIE+ +VVH FRS DR+HPEL SIHEKLK+LEK+MKLAGY
Sbjct: 485 VASIRRSMKDNNVVKIPGYSWIEINSVVHGFRSSDRLHPELASIHEKLKDLEKKMKLAGY 544

Query: 455 VPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKY 514
           VPDLEF LH VGEE+KEQLLL+HSEKLAIAFGL+KVPLG PIRVFKNLRVCGDCH ATKY
Sbjct: 545 VPDLEFVLHDVGEELKEQLLLWHSEKLAIAFGLLKVPLGVPIRVFKNLRVCGDCHSATKY 604

Query: 515 ISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           IS IE REIIVRDTTRFHHFKDG CSC DYW
Sbjct: 605 ISTIEGREIIVRDTTRFHHFKDGFCSCRDYW 635



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 89/167 (53%), Gaps = 20/167 (11%)

Query: 177 SVLLGCSHLS-SLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR 235
           S LL  S ++ S  +    HQ  F +    +  A   LI+ Y +CGD++ A ++F +++ 
Sbjct: 13  SPLLTSSFVTLSKYVSSHTHQHEFNN---NNVIASNKLIASYVRCGDIDSAVRVFEDMKV 69

Query: 236 KDVVTWNAMISGYAQH-GKGEKALRLFDKMKDEGMKPDSITFVALLLAC--NHAGLVDLG 292
           K  VTWN++++ +A+  G  E A +LF+K+     +P+++++  ++LAC  +H G+ D  
Sbjct: 70  KSTVTWNSILAAFAKKPGHFEYARQLFEKIP----QPNTVSY-NIMLACHWHHLGVHD-A 123

Query: 293 IQYFDSM-VNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 338
             +FDSM + D         +  M+  L + G + EA  L   MP K
Sbjct: 124 RGFFDSMPLKDVA------SWNTMISALAQVGLMGEARRLFSAMPEK 164


>gi|449458990|ref|XP_004147229.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Cucumis sativus]
          Length = 667

 Score =  798 bits (2062), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/571 (68%), Positives = 450/571 (78%), Gaps = 28/571 (4%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M+V+TTV WN++L+G+ K  GK+K+A ELFDKIP+PD VSYNIML C  L S  V AA  
Sbjct: 99  MSVRTTVTWNTMLSGYTKVAGKVKEAHELFDKIPEPDSVSYNIMLVC-YLRSYGVKAALA 157

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
           FF ++P+KD ASWNT+ISGF Q   M KA DLF  MPEKN VSWSAMISGY+E G L+ A
Sbjct: 158 FFNKMPVKDIASWNTLISGFAQNGQMQKAFDLFSVMPEKNGVSWSAMISGYVEHGDLEAA 217

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFG--------------------------YVENSWAE 154
            EL+K   +KSVV  TAM++GYMKFG                          YVEN  AE
Sbjct: 218 EELYKNVGMKSVVVETAMLTGYMKFGKVELAERIFQRMAVKNLVTWNSMIAGYVENCRAE 277

Query: 155 DGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLI 214
           DGLK+ + MI   +RPN  SLSSVLLGCS+LS+L LG+Q+HQLV KSPL KDTTA T LI
Sbjct: 278 DGLKVFKTMIESRVRPNPLSLSSVLLGCSNLSALPLGRQMHQLVSKSPLSKDTTACTSLI 337

Query: 215 SMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSI 274
           SMYCKCGDL+ A KLFLE+ RKDV+TWNAMISGYAQHG G KAL LFDKM++  MKPD I
Sbjct: 338 SMYCKCGDLDSAWKLFLEMPRKDVITWNAMISGYAQHGAGRKALHLFDKMRNGTMKPDWI 397

Query: 275 TFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKK 334
           TFVA++LACNHAG VDLG+QYF SM  ++GI AKP HYTC++DLLGRAG+L EAV LIK+
Sbjct: 398 TFVAVILACNHAGFVDLGVQYFKSMKKEFGIEAKPVHYTCVIDLLGRAGRLDEAVSLIKE 457

Query: 335 MPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDD 394
           MPF P  AI+GTLL ACR+HK LDLAEFAA NL NL+P +A G YVQLANIYAA  KWD 
Sbjct: 458 MPFTPHAAIYGTLLGACRIHKNLDLAEFAARNLLNLDPTSATG-YVQLANIYAATNKWDQ 516

Query: 395 VARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGY 454
           VA++R  MKE+NVVK+PGYSWIE+ +V HEFRS DR+HPEL SIH+KL EL+ +MKLAGY
Sbjct: 517 VAKVRKMMKEHNVVKIPGYSWIEIKSVTHEFRSSDRLHPELTSIHKKLNELDGKMKLAGY 576

Query: 455 VPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKY 514
           VPDLEFALH V EE KE+LLL+HSEKLAIAFGL+K   GTPIRVFKNLRVCGDCHRA K+
Sbjct: 577 VPDLEFALHDVEEEHKEKLLLWHSEKLAIAFGLMKTAPGTPIRVFKNLRVCGDCHRAIKF 636

Query: 515 ISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           ISAIEKREIIVRDTTRFHHF++G CSCGDYW
Sbjct: 637 ISAIEKREIIVRDTTRFHHFRNGFCSCGDYW 667



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 76/302 (25%), Positives = 143/302 (47%), Gaps = 46/302 (15%)

Query: 69  DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE-CGQLDKAVELF--- 124
           D  S N  I+ FV+  ++  AR++F  M  + +V+W+ M+SGY +  G++ +A ELF   
Sbjct: 72  DVVSLNKTIASFVRACDLESARNVFEKMSVRTTVTWNTMLSGYTKVAGKVKEAHELFDKI 131

Query: 125 ---------------------KVA-------PVKSVVAWTAMISGYMKFGYVENSWAEDG 156
                                K A       PVK + +W  +IS     G+ +N   +  
Sbjct: 132 PEPDSVSYNIMLVCYLRSYGVKAALAFFNKMPVKDIASWNTLIS-----GFAQNGQMQKA 186

Query: 157 LKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISM 216
             L  +M       N  S S+++ G      L+  ++    ++K+   K     T +++ 
Sbjct: 187 FDLFSVM----PEKNGVSWSAMISGYVEHGDLEAAEE----LYKNVGMKSVVVETAMLTG 238

Query: 217 YCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITF 276
           Y K G +E A ++F  +  K++VTWN+MI+GY ++ + E  L++F  M +  ++P+ ++ 
Sbjct: 239 YMKFGKVELAERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKTMIESRVRPNPLSL 298

Query: 277 VALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 336
            ++LL C++   + LG Q    +V+   ++      T ++ +  + G L  A  L  +MP
Sbjct: 299 SSVLLGCSNLSALPLGRQ-MHQLVSKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMP 357

Query: 337 FK 338
            K
Sbjct: 358 RK 359



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 81/158 (51%), Gaps = 13/158 (8%)

Query: 206 DTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQ-HGKGEKALRLFDKM 264
           D  +L   I+ + +  DLE A  +F ++  +  VTWN M+SGY +  GK ++A  LFDK+
Sbjct: 72  DVVSLNKTIASFVRACDLESARNVFEKMSVRTTVTWNTMLSGYTKVAGKVKEAHELFDKI 131

Query: 265 KDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSM-VNDYGIAAKPDHYTCMVDLLGRAG 323
            +    PDS+++  +L+    +  V   + +F+ M V D  IA+    +  ++    + G
Sbjct: 132 PE----PDSVSYNIMLVCYLRSYGVKAALAFFNKMPVKD--IAS----WNTLISGFAQNG 181

Query: 324 KLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAE 361
           ++ +A DL   MP K     +  ++S    H  L+ AE
Sbjct: 182 QMQKAFDLFSVMPEK-NGVSWSAMISGYVEHGDLEAAE 218


>gi|449517557|ref|XP_004165812.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Cucumis sativus]
          Length = 667

 Score =  798 bits (2062), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/571 (68%), Positives = 451/571 (78%), Gaps = 28/571 (4%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M+V+TTV WN++L+G+ K  GK+K+A ELFDKIP+PD VSYNIML C  L S  V AA  
Sbjct: 99  MSVRTTVTWNTMLSGYTKVAGKVKEAHELFDKIPEPDSVSYNIMLVC-YLRSYGVEAALA 157

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
           FF ++P+KD ASWNT+ISGF Q   M KA DLF  MPEKN VSWSAMISGY+E G L+ A
Sbjct: 158 FFNKMPVKDIASWNTLISGFAQNGQMQKAFDLFSVMPEKNGVSWSAMISGYVEHGDLEAA 217

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFG--------------------------YVENSWAE 154
            EL+K   +KSVV  TAM++GYMKFG                          YVEN  AE
Sbjct: 218 EELYKNVGMKSVVVETAMLTGYMKFGKVELAERIFQRMAVKNLVTWNSMIAGYVENCRAE 277

Query: 155 DGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLI 214
           DGLK+ + MI   +RPN  SLSSVLLGCS+LS+L LG+Q+HQLV KSPL KDTTA T LI
Sbjct: 278 DGLKVFKTMIESRVRPNPLSLSSVLLGCSNLSALPLGRQMHQLVSKSPLSKDTTACTSLI 337

Query: 215 SMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSI 274
           SMYCKCGDL+ A KLFLE+ RKDV++WNAMISGYAQHG G KAL LFDKM++  MKPD I
Sbjct: 338 SMYCKCGDLDSAWKLFLEMPRKDVISWNAMISGYAQHGAGRKALHLFDKMRNGTMKPDWI 397

Query: 275 TFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKK 334
           TFVA++LACNHAG VDLG+QYF SM  ++GI AKP HYTC++DLLGRAG+L EAV LIK+
Sbjct: 398 TFVAVILACNHAGFVDLGVQYFKSMKKEFGIEAKPVHYTCVIDLLGRAGRLDEAVSLIKE 457

Query: 335 MPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDD 394
           MPFKP  AI+GTLL ACR+HK LDLAEFAA NL NL+P +A G YVQLANIYAA  KWD 
Sbjct: 458 MPFKPHAAIYGTLLGACRIHKNLDLAEFAARNLLNLDPTSATG-YVQLANIYAATNKWDQ 516

Query: 395 VARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGY 454
           VA++R  MKE+NVVK+PGYSWIE+ +V HEFRS DR+HPEL SIH+KL EL+ +MKLAGY
Sbjct: 517 VAKVRKMMKEHNVVKIPGYSWIEIKSVTHEFRSSDRLHPELTSIHKKLNELDGKMKLAGY 576

Query: 455 VPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKY 514
           VPDLEFALH V EE KE+LLL+HSEKLAIAFGL+K   GTPIRVFKNLRVCGDCHRA K+
Sbjct: 577 VPDLEFALHDVEEEHKEKLLLWHSEKLAIAFGLMKTAPGTPIRVFKNLRVCGDCHRAIKF 636

Query: 515 ISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           ISAIEKREIIVRDTTRFHHF++G CSCGDYW
Sbjct: 637 ISAIEKREIIVRDTTRFHHFRNGFCSCGDYW 667



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 74/302 (24%), Positives = 141/302 (46%), Gaps = 46/302 (15%)

Query: 69  DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE-CGQLDKAVEL---- 123
           D  S N  I+ FV+  ++  AR++F  M  + +V+W+ M+SGY +  G++ +A EL    
Sbjct: 72  DVVSLNKTIASFVRACDLESARNVFEKMSVRTTVTWNTMLSGYTKVAGKVKEAHELFDKI 131

Query: 124 ---------------------------FKVAPVKSVVAWTAMISGYMKFGYVENSWAEDG 156
                                      F   PVK + +W  +IS     G+ +N   +  
Sbjct: 132 PEPDSVSYNIMLVCYLRSYGVEAALAFFNKMPVKDIASWNTLIS-----GFAQNGQMQKA 186

Query: 157 LKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISM 216
             L  +M       N  S S+++ G      L+  ++    ++K+   K     T +++ 
Sbjct: 187 FDLFSVM----PEKNGVSWSAMISGYVEHGDLEAAEE----LYKNVGMKSVVVETAMLTG 238

Query: 217 YCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITF 276
           Y K G +E A ++F  +  K++VTWN+MI+GY ++ + E  L++F  M +  ++P+ ++ 
Sbjct: 239 YMKFGKVELAERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKTMIESRVRPNPLSL 298

Query: 277 VALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 336
            ++LL C++   + LG Q    +V+   ++      T ++ +  + G L  A  L  +MP
Sbjct: 299 SSVLLGCSNLSALPLGRQ-MHQLVSKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMP 357

Query: 337 FK 338
            K
Sbjct: 358 RK 359



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 82/158 (51%), Gaps = 13/158 (8%)

Query: 206 DTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQ-HGKGEKALRLFDKM 264
           D  +L   I+ + +  DLE A  +F ++  +  VTWN M+SGY +  GK ++A  LFDK+
Sbjct: 72  DVVSLNKTIASFVRACDLESARNVFEKMSVRTTVTWNTMLSGYTKVAGKVKEAHELFDKI 131

Query: 265 KDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSM-VNDYGIAAKPDHYTCMVDLLGRAG 323
            +    PDS+++  +L+    +  V+  + +F+ M V D  IA+    +  ++    + G
Sbjct: 132 PE----PDSVSYNIMLVCYLRSYGVEAALAFFNKMPVKD--IAS----WNTLISGFAQNG 181

Query: 324 KLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAE 361
           ++ +A DL   MP K     +  ++S    H  L+ AE
Sbjct: 182 QMQKAFDLFSVMPEK-NGVSWSAMISGYVEHGDLEAAE 218


>gi|334186622|ref|NP_680717.2| tetratricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
 gi|357529479|sp|Q9M4P3.3|PP316_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g16835, mitochondrial; AltName: Full=Protein DYW10;
           Flags: Precursor
 gi|332658412|gb|AEE83812.1| tetratricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
          Length = 656

 Score =  750 bits (1936), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/572 (65%), Positives = 442/572 (77%), Gaps = 29/572 (5%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  K T+ WNS+L G +K   ++ +A +LFD+IP+PD  SYNIMLSC + N +    A  
Sbjct: 87  MRAKNTITWNSLLIGISKDPSRMMEAHQLFDEIPEPDTFSYNIMLSCYVRNVN-FEKAQS 145

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
           FF R+P KD ASWNTMI+G+ ++  M KAR+LF +M EKN VSW+AMISGYIECG L+KA
Sbjct: 146 FFDRMPFKDAASWNTMITGYARRGEMEKARELFYSMMEKNEVSWNAMISGYIECGDLEKA 205

Query: 121 VELFKVAPVKSVVAWTAMISGYMKF---------------------------GYVENSWA 153
              FKVAPV+ VVAWTAMI+GYMK                            GYVENS  
Sbjct: 206 SHFFKVAPVRGVVAWTAMITGYMKAKKVELAEAMFKDMTVNKNLVTWNAMISGYVENSRP 265

Query: 154 EDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPL 213
           EDGLKL R M+  GIRPN+S LSS LLGCS LS+LQLG+Q+HQ+V KS LC D TALT L
Sbjct: 266 EDGLKLFRAMLEEGIRPNSSGLSSALLGCSELSALQLGRQIHQIVSKSTLCNDVTALTSL 325

Query: 214 ISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDS 273
           ISMYCKCG+L DA KLF  +++KDVV WNAMISGYAQHG  +KAL LF +M D  ++PD 
Sbjct: 326 ISMYCKCGELGDAWKLFEVMKKKDVVAWNAMISGYAQHGNADKALCLFREMIDNKIRPDW 385

Query: 274 ITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIK 333
           ITFVA+LLACNHAGLV++G+ YF+SMV DY +  +PDHYTCMVDLLGRAGKL EA+ LI+
Sbjct: 386 ITFVAVLLACNHAGLVNIGMAYFESMVRDYKVEPQPDHYTCMVDLLGRAGKLEEALKLIR 445

Query: 334 KMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWD 393
            MPF+P  A+FGTLL ACRVHK ++LAEFAA  L  LN  NAAG YVQLANIYA+  +W+
Sbjct: 446 SMPFRPHAAVFGTLLGACRVHKNVELAEFAAEKLLQLNSQNAAG-YVQLANIYASKNRWE 504

Query: 394 DVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAG 453
           DVAR+R  MKE+NVVK+PGYSWIE+   VH FRS DR+HPEL SIH+KLKELEK+MKLAG
Sbjct: 505 DVARVRKRMKESNVVKVPGYSWIEIRNKVHHFRSSDRIHPELDSIHKKLKELEKKMKLAG 564

Query: 454 YVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATK 513
           Y P+LEFALH V EE KE+LLL+HSEKLA+AFG IK+P G+ I+VFKNLR+CGDCH+A K
Sbjct: 565 YKPELEFALHNVEEEQKEKLLLWHSEKLAVAFGCIKLPQGSQIQVFKNLRICGDCHKAIK 624

Query: 514 YISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           +IS IEKREIIVRDTTRFHHFKDG+CSCGDYW
Sbjct: 625 FISEIEKREIIVRDTTRFHHFKDGSCSCGDYW 656


>gi|297804490|ref|XP_002870129.1| hypothetical protein ARALYDRAFT_329829 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297315965|gb|EFH46388.1| hypothetical protein ARALYDRAFT_329829 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 853

 Score =  666 bits (1719), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/544 (60%), Positives = 394/544 (72%), Gaps = 46/544 (8%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  K TV+WNS+L G +K   ++ +A +LFD+IP+PD  SYNIMLSC + N +    A  
Sbjct: 87  MRAKNTVSWNSLLVGISKDPSRMMEAHQLFDEIPEPDTFSYNIMLSCYVRNGN-FEKAQS 145

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
           FF R+P KD ASWNTMI+G+ ++  M KAR LF +M EKN VSW+AMISGYIECG L+KA
Sbjct: 146 FFNRMPFKDAASWNTMITGYARRGEMEKARVLFYSMMEKNEVSWNAMISGYIECGDLEKA 205

Query: 121 VELFKVAPVKSVVAWTAMISGYMKF---------------------------GYVENSWA 153
              FK AP + VVAWTAMI+GYMK                            GYVENS  
Sbjct: 206 AHFFKAAPFRGVVAWTAMITGYMKAKKVELAEAMFKDMTVKKNLVTWNAMISGYVENSRP 265

Query: 154 EDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPL 213
           EDGLKL R M+  GIRPN+S LSS LLGCS LS+L LG+Q+HQ+V               
Sbjct: 266 EDGLKLFRAMLEEGIRPNSSGLSSALLGCSELSALCLGRQIHQIV--------------- 310

Query: 214 ISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDS 273
             MYCKCG+L DA KLF  +++KDVV WNAMISGYAQHG  EKAL LF +M+D   KPD 
Sbjct: 311 --MYCKCGELGDAWKLFEAMKKKDVVAWNAMISGYAQHGNAEKALCLFHEMRDSKTKPDW 368

Query: 274 ITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIK 333
           ITFVA+LLACNHAGLVD+G+ YFDSMV DY +  +PDHYTCMVDLLGRAGK+ EA+ LI+
Sbjct: 369 ITFVAVLLACNHAGLVDIGMTYFDSMVRDYRVEPRPDHYTCMVDLLGRAGKVEEALKLIR 428

Query: 334 KMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWD 393
            MPF+P  A+FGTLL ACRVHK ++LAEFAA  L  L+P NAAG YVQLANIYA+   W+
Sbjct: 429 SMPFRPHAAVFGTLLGACRVHKNVELAEFAAEKLLELDPRNAAG-YVQLANIYASKNLWE 487

Query: 394 DVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAG 453
           DVAR+R  MKE+NVVK+PGYSWIE+   +H FRS DR+HPEL SIH+KLKELE++MKLAG
Sbjct: 488 DVARVRKRMKESNVVKVPGYSWIEIRNKIHHFRSSDRIHPELDSIHKKLKELERKMKLAG 547

Query: 454 YVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATK 513
           Y P+LEFALH V EE KE+LLL+HSEKLA+AFG IK+P G+PI+VFKNLR+C    R + 
Sbjct: 548 YKPELEFALHNVEEEQKEKLLLWHSEKLAVAFGCIKLPQGSPIQVFKNLRICASGSRVSD 607

Query: 514 YISA 517
           +  A
Sbjct: 608 HFPA 611



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 84/331 (25%), Positives = 143/331 (43%), Gaps = 59/331 (17%)

Query: 33  IPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTA-SWNTMISGFVQKKNMAKARD 91
           +  PD +     LS    + +  +   D+  +   +D     N +I+  V+  ++  A  
Sbjct: 23  VENPDAILVGSCLSSTFSSPEPSLVRSDYLTKPSDEDQIFPLNKIIATRVRSGDIDGALS 82

Query: 92  LFLAMPEKNSVSWSA--------------------------------MISGYIECGQLDK 119
           +F  M  KN+VSW++                                M+S Y+  G  +K
Sbjct: 83  VFHGMRAKNTVSWNSLLVGISKDPSRMMEAHQLFDEIPEPDTFSYNIMLSCYVRNGNFEK 142

Query: 120 AVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVL 179
           A   F   P K   +W  MI+GY + G +E +         R++    +  N  S ++++
Sbjct: 143 AQSFFNRMPFKDAASWNTMITGYARRGEMEKA---------RVLFYSMMEKNEVSWNAMI 193

Query: 180 LGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ-RKDV 238
            G  ++    L K  H   FK+   +   A T +I+ Y K   +E A  +F ++  +K++
Sbjct: 194 SG--YIECGDLEKAAH--FFKAAPFRGVVAWTAMITGYMKAKKVELAEAMFKDMTVKKNL 249

Query: 239 VTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDS 298
           VTWNAMISGY ++ + E  L+LF  M +EG++P+S    + LL C+    + LG Q    
Sbjct: 250 VTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCSELSALCLGRQIHQI 309

Query: 299 MVNDYGIAAKPDHYTCMVDLLGRAGKLVEAV 329
           ++             C    LG A KL EA+
Sbjct: 310 VM------------YCKCGELGDAWKLFEAM 328


>gi|222641236|gb|EEE69368.1| hypothetical protein OsJ_28705 [Oryza sativa Japonica Group]
          Length = 662

 Score =  658 bits (1697), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/570 (56%), Positives = 401/570 (70%), Gaps = 30/570 (5%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQ 63
           KTT  +N +LAG+A+  G+L DA+ LFD+IP PD VSYN +LSC    S D   A   F 
Sbjct: 95  KTTATYNCLLAGYARALGRLADARHLFDRIPTPDAVSYNTLLSC-HFASGDADGARRLFA 153

Query: 64  RLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVEL 123
            +P++D  SWNTM+SG  +   + +A+ +FLAMP +NSVSW+AM+SG+     +  A E 
Sbjct: 154 SMPVRDVVSWNTMVSGLSKSGAVEEAKAVFLAMPVRNSVSWNAMVSGFACSRDMSAAEEW 213

Query: 124 FKVAPVKS-VVAWTAMISGYMKFG--------------------------YVENSWAEDG 156
           F+ AP K   V WTAM+SGYM  G                          YV+NS A+D 
Sbjct: 214 FRNAPEKGDAVLWTAMVSGYMDIGNVVKAIEYFEAMPVRNLVSWNAVVAGYVKNSHADDA 273

Query: 157 LKLLRMMI-GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLIS 215
           L+L R M+    ++PNAS+LSSVLLGCS+LS+L  GKQ+HQ   K PL ++ T  T L+S
Sbjct: 274 LRLFRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQIHQWCMKLPLSRNLTVGTSLVS 333

Query: 216 MYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSIT 275
           MYCKCGDL  ACKLF E+  +DVV WNAMISGYAQHG G++A+ LF++MKDEG++P+ IT
Sbjct: 334 MYCKCGDLSSACKLFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWIT 393

Query: 276 FVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335
           FVA+L AC H GL D GI+ F+ M   YGI  + DHY+CMVDLL RAGKL  AVDLI+ M
Sbjct: 394 FVAVLTACIHTGLCDFGIRCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLERAVDLIRSM 453

Query: 336 PFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDV 395
           PF+P P+ +GTLL+ACRV+K L+ AE AA  L   +P  +AG YVQLANIYA   +WDDV
Sbjct: 454 PFEPHPSAYGTLLAACRVYKNLEFAELAAGKLIEKDP-QSAGAYVQLANIYAGANQWDDV 512

Query: 396 ARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYV 455
           +R+R  MK+N VVK PGYSWIE+  V+HEFRS DR+HP+L  IHEKL +L +RMK  GYV
Sbjct: 513 SRVRRWMKDNAVVKTPGYSWIEIKGVMHEFRSNDRLHPQLYLIHEKLGQLAERMKAMGYV 572

Query: 456 PDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYI 515
           PDL+F LH V E +K Q+L+ HSEKLAI+FGLI    G  +R+FKNLRVCGDCH A K I
Sbjct: 573 PDLDFVLHDVDETLKVQMLMRHSEKLAISFGLISTAPGMTLRIFKNLRVCGDCHNAAKVI 632

Query: 516 SAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           S IE REII+RDTTRFHHF+ G CSCGDYW
Sbjct: 633 SKIEDREIILRDTTRFHHFRGGHCSCGDYW 662



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 72/275 (26%), Positives = 124/275 (45%), Gaps = 55/275 (20%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQP-DVVSYNIMLSCILLNSDDVVAAF 59
           M V+ +V+WN++++GFA  R  +  A+E F   P+  D V +  M+S   ++  +VV A 
Sbjct: 186 MPVRNSVSWNAMVSGFACSR-DMSAAEEWFRNAPEKGDAVLWTAMVSG-YMDIGNVVKAI 243

Query: 60  DFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM-------PEKNSVS--------- 103
           ++F+ +P+++  SWN +++G+V+  +   A  LF  M       P  +++S         
Sbjct: 244 EYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNL 303

Query: 104 -----------W-------------SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMI 139
                      W             ++++S Y +CG L  A +LF     + VVAW AMI
Sbjct: 304 SALGFGKQIHQWCMKLPLSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTRDVVAWNAMI 363

Query: 140 SGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLG----KQVH 195
           SGY + G       ++ + L   M   G+ PN  +  +VL  C H      G    + + 
Sbjct: 364 SGYAQHGD-----GKEAINLFERMKDEGVEPNWITFVAVLTACIHTGLCDFGIRCFEGMQ 418

Query: 196 QLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 230
           +L    P     + +  L+   C+ G LE A  L 
Sbjct: 419 ELYGIEPRVDHYSCMVDLL---CRAGKLERAVDLI 450



 Score = 45.4 bits (106), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 57/120 (47%), Gaps = 12/120 (10%)

Query: 221 GDLEDACKLFLEIQRKDVVTWNAMISGYAQH-GKGEKALRLFDKMKDEGMKPDSITFVAL 279
           GDL  A + F    RK   T+N +++GYA+  G+   A  LFD++      PD++++  L
Sbjct: 80  GDLTGAEEAFASTPRKTTATYNCLLAGYARALGRLADARHLFDRIP----TPDAVSYNTL 135

Query: 280 LLACNHAGLVDLGIQYFDSM-VNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 338
           L     +G  D   + F SM V D         +  MV  L ++G + EA  +   MP +
Sbjct: 136 LSCHFASGDADGARRLFASMPVRDV------VSWNTMVSGLSKSGAVEEAKAVFLAMPVR 189


>gi|27817913|dbj|BAC55678.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|37806252|dbj|BAC99769.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 613

 Score =  658 bits (1697), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/570 (56%), Positives = 401/570 (70%), Gaps = 30/570 (5%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQ 63
           KTT  +N +LAG+A+  G+L DA+ LFD+IP PD VSYN +LSC    S D   A   F 
Sbjct: 46  KTTATYNCLLAGYARALGRLADARHLFDRIPTPDAVSYNTLLSC-HFASGDADGARRLFA 104

Query: 64  RLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVEL 123
            +P++D  SWNTM+SG  +   + +A+ +FLAMP +NSVSW+AM+SG+     +  A E 
Sbjct: 105 SMPVRDVVSWNTMVSGLSKSGAVEEAKAVFLAMPVRNSVSWNAMVSGFACSRDMSAAEEW 164

Query: 124 FKVAPVKS-VVAWTAMISGYMKFG--------------------------YVENSWAEDG 156
           F+ AP K   V WTAM+SGYM  G                          YV+NS A+D 
Sbjct: 165 FRNAPEKGDAVLWTAMVSGYMDIGNVVKAIEYFEAMPVRNLVSWNAVVAGYVKNSHADDA 224

Query: 157 LKLLRMMI-GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLIS 215
           L+L R M+    ++PNAS+LSSVLLGCS+LS+L  GKQ+HQ   K PL ++ T  T L+S
Sbjct: 225 LRLFRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQIHQWCMKLPLSRNLTVGTSLVS 284

Query: 216 MYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSIT 275
           MYCKCGDL  ACKLF E+  +DVV WNAMISGYAQHG G++A+ LF++MKDEG++P+ IT
Sbjct: 285 MYCKCGDLSSACKLFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWIT 344

Query: 276 FVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335
           FVA+L AC H GL D GI+ F+ M   YGI  + DHY+CMVDLL RAGKL  AVDLI+ M
Sbjct: 345 FVAVLTACIHTGLCDFGIRCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLERAVDLIRSM 404

Query: 336 PFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDV 395
           PF+P P+ +GTLL+ACRV+K L+ AE AA  L   +P  +AG YVQLANIYA   +WDDV
Sbjct: 405 PFEPHPSAYGTLLAACRVYKNLEFAELAAGKLIEKDP-QSAGAYVQLANIYAGANQWDDV 463

Query: 396 ARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYV 455
           +R+R  MK+N VVK PGYSWIE+  V+HEFRS DR+HP+L  IHEKL +L +RMK  GYV
Sbjct: 464 SRVRRWMKDNAVVKTPGYSWIEIKGVMHEFRSNDRLHPQLYLIHEKLGQLAERMKAMGYV 523

Query: 456 PDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYI 515
           PDL+F LH V E +K Q+L+ HSEKLAI+FGLI    G  +R+FKNLRVCGDCH A K I
Sbjct: 524 PDLDFVLHDVDETLKVQMLMRHSEKLAISFGLISTAPGMTLRIFKNLRVCGDCHNAAKVI 583

Query: 516 SAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           S IE REII+RDTTRFHHF+ G CSCGDYW
Sbjct: 584 SKIEDREIILRDTTRFHHFRGGHCSCGDYW 613



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 72/275 (26%), Positives = 124/275 (45%), Gaps = 55/275 (20%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQP-DVVSYNIMLSCILLNSDDVVAAF 59
           M V+ +V+WN++++GFA  R  +  A+E F   P+  D V +  M+S   ++  +VV A 
Sbjct: 137 MPVRNSVSWNAMVSGFACSR-DMSAAEEWFRNAPEKGDAVLWTAMVSG-YMDIGNVVKAI 194

Query: 60  DFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM-------PEKNSVS--------- 103
           ++F+ +P+++  SWN +++G+V+  +   A  LF  M       P  +++S         
Sbjct: 195 EYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNL 254

Query: 104 -----------W-------------SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMI 139
                      W             ++++S Y +CG L  A +LF     + VVAW AMI
Sbjct: 255 SALGFGKQIHQWCMKLPLSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTRDVVAWNAMI 314

Query: 140 SGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLG----KQVH 195
           SGY + G       ++ + L   M   G+ PN  +  +VL  C H      G    + + 
Sbjct: 315 SGYAQHGD-----GKEAINLFERMKDEGVEPNWITFVAVLTACIHTGLCDFGIRCFEGMQ 369

Query: 196 QLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 230
           +L    P     + +  L+   C+ G LE A  L 
Sbjct: 370 ELYGIEPRVDHYSCMVDLL---CRAGKLERAVDLI 401



 Score = 45.1 bits (105), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 57/120 (47%), Gaps = 12/120 (10%)

Query: 221 GDLEDACKLFLEIQRKDVVTWNAMISGYAQH-GKGEKALRLFDKMKDEGMKPDSITFVAL 279
           GDL  A + F    RK   T+N +++GYA+  G+   A  LFD++      PD++++  L
Sbjct: 31  GDLTGAEEAFASTPRKTTATYNCLLAGYARALGRLADARHLFDRIP----TPDAVSYNTL 86

Query: 280 LLACNHAGLVDLGIQYFDSM-VNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 338
           L     +G  D   + F SM V D         +  MV  L ++G + EA  +   MP +
Sbjct: 87  LSCHFASGDADGARRLFASMPVRDV------VSWNTMVSGLSKSGAVEEAKAVFLAMPVR 140


>gi|125547694|gb|EAY93516.1| hypothetical protein OsI_15309 [Oryza sativa Indica Group]
          Length = 613

 Score =  650 bits (1678), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/570 (56%), Positives = 398/570 (69%), Gaps = 30/570 (5%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQ 63
           KTT  +N +LAG+A+  G+L DA+ LFD+IP PDVVSYN +L C    S D   A   F 
Sbjct: 46  KTTATYNCLLAGYARAPGRLADARHLFDRIPTPDVVSYNTLLLC-HFASGDADGARRLFA 104

Query: 64  RLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVEL 123
            +P++D ASWNTM+SG  +   + +A+ +FLAMP +NSVSW+AM+SG+   G +  A E 
Sbjct: 105 SMPVRDVASWNTMVSGLSKSGAVEEAKVVFLAMPVRNSVSWNAMVSGFACSGDMSTAEEW 164

Query: 124 FKVAPVKS-VVAWTAMISGYMKFG--------------------------YVENSWAEDG 156
           F+ AP K   V WTAM+SGYM  G                          YV+NS A+D 
Sbjct: 165 FRNAPEKEDAVLWTAMVSGYMDIGNVVKAIKYFEAMPVRNLVSWNAVVAGYVKNSHADDA 224

Query: 157 LKLLRMMI-GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLIS 215
           L+L R M+    ++PNAS+LSSVLLGCS+LS+L  GKQ+HQ   K  L ++ T  T L+S
Sbjct: 225 LRLFRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQIHQWCMKLLLSRNLTVGTSLVS 284

Query: 216 MYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSIT 275
           MYCKCGDL  AC LF E+  +DVV WNAMISGYAQHG G++A+ LF++MKDEG++P+ IT
Sbjct: 285 MYCKCGDLSSACILFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWIT 344

Query: 276 FVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335
           FV +L AC H GL D GIQ F+ M   YGI  + DHY+CMVDLL RAGKL  AVD I+ M
Sbjct: 345 FVVVLTACIHTGLCDFGIQCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLERAVDFIRSM 404

Query: 336 PFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDV 395
           PF+P P+ +GTLL+ACRV+K L+ AE AA  L   +P  +AG YVQLANIYA   +WDDV
Sbjct: 405 PFEPHPSAYGTLLAACRVYKNLEFAELAAGKLIEKDP-QSAGAYVQLANIYAVANQWDDV 463

Query: 396 ARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYV 455
           +R+R  MK+N VVK PGYSWIE+  V+HEFRS DR+HP+L  IHEKL +L +RMK  GYV
Sbjct: 464 SRVRRWMKDNTVVKTPGYSWIEIKGVLHEFRSNDRLHPQLYLIHEKLGQLAERMKEMGYV 523

Query: 456 PDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYI 515
           PDL+F LH V E +K Q+L+ HSEKLAIAFGLI    G  +R+FKNLRVCGDCH A K I
Sbjct: 524 PDLDFVLHDVDETMKVQMLMRHSEKLAIAFGLISTAHGMTLRIFKNLRVCGDCHNAAKVI 583

Query: 516 SAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           S IE REII+RDTTRFHHF+ G CSC DYW
Sbjct: 584 SMIEDREIILRDTTRFHHFRGGHCSCDDYW 613



 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 72/271 (26%), Positives = 120/271 (44%), Gaps = 55/271 (20%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQ-PDVVSYNIMLSCILLNSDDVVAAF 59
           M V+ +V+WN++++GFA   G +  A+E F   P+  D V +  M+S   ++  +VV A 
Sbjct: 137 MPVRNSVSWNAMVSGFACS-GDMSTAEEWFRNAPEKEDAVLWTAMVSG-YMDIGNVVKAI 194

Query: 60  DFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM-------PEKNSVS--------- 103
            +F+ +P+++  SWN +++G+V+  +   A  LF  M       P  +++S         
Sbjct: 195 KYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNL 254

Query: 104 -----------W-------------SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMI 139
                      W             ++++S Y +CG L  A  LF     + VVAW AMI
Sbjct: 255 SALGFGKQIHQWCMKLLLSRNLTVGTSLVSMYCKCGDLSSACILFGEMHTRDVVAWNAMI 314

Query: 140 SGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ----VH 195
           SGY + G       ++ + L   M   G+ PN  +   VL  C H      G Q    + 
Sbjct: 315 SGYAQHGD-----GKEAINLFERMKDEGVEPNWITFVVVLTACIHTGLCDFGIQCFEGMQ 369

Query: 196 QLVFKSPLCKDTTALTPLISMYCKCGDLEDA 226
           +L    P     + +  L+   C+ G LE A
Sbjct: 370 ELYGIEPRVDHYSCMVDLL---CRAGKLERA 397



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 56/251 (22%), Positives = 117/251 (46%), Gaps = 45/251 (17%)

Query: 77  ISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIEC---------------------- 114
           ++  V+  ++A A + F++ P K + +++ +++GY                         
Sbjct: 24  VAAAVRHGDLAGAEEAFVSTPRKTTATYNCLLAGYARAPGRLADARHLFDRIPTPDVVSY 83

Query: 115 ----------GQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI 164
                     G  D A  LF   PV+ V +W  M+SG  K G VE +          + +
Sbjct: 84  NTLLLCHFASGDADGARRLFASMPVRDVASWNTMVSGLSKSGAVEEAKV--------VFL 135

Query: 165 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 224
            + +R N+ S ++++ G +    +   ++  +    +P  +D    T ++S Y   G++ 
Sbjct: 136 AMPVR-NSVSWNAMVSGFACSGDMSTAEEWFR---NAPEKEDAVLWTAMVSGYMDIGNVV 191

Query: 225 DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKM-KDEGMKPDSITFVALLLAC 283
            A K F  +  +++V+WNA+++GY ++   + ALRLF  M ++  ++P++ T  ++LL C
Sbjct: 192 KAIKYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGC 251

Query: 284 NHAGLVDLGIQ 294
           ++   +  G Q
Sbjct: 252 SNLSALGFGKQ 262



 Score = 48.1 bits (113), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 62/130 (47%), Gaps = 12/130 (9%)

Query: 211 TPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQH-GKGEKALRLFDKMKDEGM 269
           T  ++   + GDL  A + F+   RK   T+N +++GYA+  G+   A  LFD++     
Sbjct: 21  TAAVAAAVRHGDLAGAEEAFVSTPRKTTATYNCLLAGYARAPGRLADARHLFDRIP---- 76

Query: 270 KPDSITFVALLLACNHAGLVDLGIQYFDSM-VNDYGIAAKPDHYTCMVDLLGRAGKLVEA 328
            PD +++  LLL    +G  D   + F SM V D         +  MV  L ++G + EA
Sbjct: 77  TPDVVSYNTLLLCHFASGDADGARRLFASMPVRDVA------SWNTMVSGLSKSGAVEEA 130

Query: 329 VDLIKKMPFK 338
             +   MP +
Sbjct: 131 KVVFLAMPVR 140


>gi|242062682|ref|XP_002452630.1| hypothetical protein SORBIDRAFT_04g029423 [Sorghum bicolor]
 gi|241932461|gb|EES05606.1| hypothetical protein SORBIDRAFT_04g029423 [Sorghum bicolor]
          Length = 605

 Score =  637 bits (1643), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 314/574 (54%), Positives = 393/574 (68%), Gaps = 32/574 (5%)

Query: 2   NVKTTVNWNSVLAGFAKQRG--KLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAF 59
            +KTT  +N +LAG+AK  G  +L DA+ LFD IP PD VSYN +LSC      D+  A+
Sbjct: 34  QLKTTTTYNCLLAGYAKASGPGRLADARRLFDSIPHPDAVSYNTLLSC-HFACGDIDGAW 92

Query: 60  DFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDK 119
             F  +P++D  SWNTM+SG  +   + +A  +F AMP +N+VSW+AM++     G +  
Sbjct: 93  RVFSTMPVRDVTSWNTMVSGLSKNGAIEEAEAMFRAMPARNAVSWNAMVAARASSGDMGA 152

Query: 120 AVELFKVAPVKS-VVAWTAMISGYMKF--------------------------GYVENSW 152
           A  LF+ AP K+  + WTAM+SGYM                            GYV+NS 
Sbjct: 153 AENLFRNAPEKTDAILWTAMVSGYMDTGNVQKAMEYFRAMPVRNLVSWNAVVAGYVKNSR 212

Query: 153 AEDGLKLLRMMIGLGI-RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALT 211
           A D L++ + M+   I +PN S+LSSVLLGCS+LS+L  G+QVHQ   K PL +  T  T
Sbjct: 213 AGDALRVFKTMVEDAIVQPNPSTLSSVLLGCSNLSALGFGRQVHQWCMKLPLGRSITVGT 272

Query: 212 PLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKP 271
            L+SMYCKCGDL+DACKLF E+  KD+V WNAMISGYAQHG G KA++LF+KMKDEG+ P
Sbjct: 273 SLLSMYCKCGDLDDACKLFDEMHTKDIVAWNAMISGYAQHGGGRKAIKLFEKMKDEGVVP 332

Query: 272 DSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDL 331
           D IT +A+L AC H GL D GIQ F++M   Y I  + DHY+CMVDLL RAG L  AV++
Sbjct: 333 DWITLLAVLTACIHTGLCDFGIQCFETMQEAYNIEPQVDHYSCMVDLLCRAGLLERAVNM 392

Query: 332 IKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKK 391
           I  MPF+P P+ +GTLL+ACRV+K L+ AEFAA  L   +P N AG YVQLANIYA   +
Sbjct: 393 IHSMPFEPHPSAYGTLLTACRVYKNLEFAEFAARKLIEQDPQN-AGAYVQLANIYAVANR 451

Query: 392 WDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKL 451
           WDDV+R+R  MK+N VVK PGYSW+E+  V HEFRS DR+HP+L  IH+KL  L K MK 
Sbjct: 452 WDDVSRVRRWMKDNAVVKTPGYSWMEIKGVRHEFRSNDRLHPQLDLIHDKLDRLGKLMKA 511

Query: 452 AGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRA 511
            GY PDL+FALH V E +K Q+L+ HSEKLAIAFGLI    G  +R+FKNLR+CGDCH A
Sbjct: 512 MGYSPDLDFALHDVEESLKSQMLMRHSEKLAIAFGLISTSPGMTLRIFKNLRICGDCHNA 571

Query: 512 TKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
            K IS IE REII+RDTTRFHHF+ G CSCGDYW
Sbjct: 572 AKLISKIEDREIILRDTTRFHHFRGGHCSCGDYW 605



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 67/245 (27%), Positives = 129/245 (52%), Gaps = 16/245 (6%)

Query: 54  DVVAAFDFFQRLPIKDTASWNTMISGFVQKKN---MAKARDLFLAMPEKNSVSWSAMISG 110
           D+  A + F    +K T ++N +++G+ +      +A AR LF ++P  ++VS++ ++S 
Sbjct: 22  DLAGAEEAFASTQLKTTTTYNCLLAGYAKASGPGRLADARRLFDSIPHPDAVSYNTLLSC 81

Query: 111 YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRP 170
           +  CG +D A  +F   PV+ V +W  M+SG  K G +E + A     + R M      P
Sbjct: 82  HFACGDIDGAWRVFSTMPVRDVTSWNTMVSGLSKNGAIEEAEA-----MFRAM------P 130

Query: 171 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 230
             +++S   +  +  SS  +G     L   +P   D    T ++S Y   G+++ A + F
Sbjct: 131 ARNAVSWNAMVAARASSGDMGA-AENLFRNAPEKTDAILWTAMVSGYMDTGNVQKAMEYF 189

Query: 231 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKM-KDEGMKPDSITFVALLLACNHAGLV 289
             +  +++V+WNA+++GY ++ +   ALR+F  M +D  ++P+  T  ++LL C++   +
Sbjct: 190 RAMPVRNLVSWNAVVAGYVKNSRAGDALRVFKTMVEDAIVQPNPSTLSSVLLGCSNLSAL 249

Query: 290 DLGIQ 294
             G Q
Sbjct: 250 GFGRQ 254



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 79/149 (53%), Gaps = 10/149 (6%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYN-IMLSCILLNSDDVVA-- 57
           M V+  V+WN+V+AG+ K   +  DA  +F  + +  +V  N   LS +LL   ++ A  
Sbjct: 192 MPVRNLVSWNAVVAGYVKN-SRAGDALRVFKTMVEDAIVQPNPSTLSSVLLGCSNLSALG 250

Query: 58  ----AFDFFQRLPIKDTASWNT-MISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYI 112
                  +  +LP+  + +  T ++S + +  ++  A  LF  M  K+ V+W+AMISGY 
Sbjct: 251 FGRQVHQWCMKLPLGRSITVGTSLLSMYCKCGDLDDACKLFDEMHTKDIVAWNAMISGYA 310

Query: 113 ECGQLDKAVELFKVAPVKSVVA-WTAMIS 140
           + G   KA++LF+    + VV  W  +++
Sbjct: 311 QHGGGRKAIKLFEKMKDEGVVPDWITLLA 339



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 85/330 (25%), Positives = 129/330 (39%), Gaps = 76/330 (23%)

Query: 222 DLEDACKLFLEIQRKDVVTWNAMISGYAQH---GKGEKALRLFDKMKDEGMKPDSITFVA 278
           DL  A + F   Q K   T+N +++GYA+    G+   A RLFD +      PD++++  
Sbjct: 22  DLAGAEEAFASTQLKTTTTYNCLLAGYAKASGPGRLADARRLFDSIP----HPDAVSY-N 76

Query: 279 LLLACNHA-GLVDLGIQYFDSM-VNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 336
            LL+C+ A G +D   + F +M V D         +  MV  L + G + EA  + + MP
Sbjct: 77  TLLSCHFACGDIDGAWRVFSTMPVRDV------TSWNTMVSGLSKNGAIEEAEAMFRAMP 130

Query: 337 FKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANA--------AGCYVQLANIYAA 388
              + A+    + A R     D+   AA NLF   P              Y+   N+  A
Sbjct: 131 --ARNAVSWNAMVAARASSG-DMG--AAENLFRNAPEKTDAILWTAMVSGYMDTGNVQKA 185

Query: 389 MKKWDDVARIRLSMKENNVVKMPGYSW-IEVGTVVHEFRSGD--RVHPELVSIHEKLKEL 445
           M+ +        +M   N+V     SW   V   V   R+GD  RV   +V         
Sbjct: 186 MEYFR-------AMPVRNLV-----SWNAVVAGYVKNSRAGDALRVFKTMV--------- 224

Query: 446 EKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFG------LIKVPLGTPIRVF 499
                        E A+          +LL  S   A+ FG       +K+PLG  I V 
Sbjct: 225 -------------EDAIVQPNPSTLSSVLLGCSNLSALGFGRQVHQWCMKLPLGRSITVG 271

Query: 500 KNLRV----CGDCHRATKYISAIEKREIIV 525
            +L      CGD   A K    +  ++I+ 
Sbjct: 272 TSLLSMYCKCGDLDDACKLFDEMHTKDIVA 301


>gi|357139833|ref|XP_003571481.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Brachypodium distachyon]
          Length = 617

 Score =  633 bits (1633), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 311/584 (53%), Positives = 406/584 (69%), Gaps = 49/584 (8%)

Query: 4   KTTVNWNSVLAGFAK------QRGKL-KDAQELFDKIPQPDVVSYNIMLSCILLNSDDVV 56
           KTT ++N +LAG+A+      +R +L  DA+ LFD+IP+PD VSYN +LSC    + DV 
Sbjct: 41  KTTADYNRLLAGYARAARPGGRRDRLLADARHLFDRIPRPDAVSYNTLLSC-HFAAGDVR 99

Query: 57  AAFDFFQRLP--IKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVS----------- 103
            A D F  +P   ++  SWNTM+SG  +   + +AR +FLAMP +NS+S           
Sbjct: 100 GARDLFAAMPATARNVTSWNTMLSGLSRSGAVGEARAVFLAMPARNSISWNAMVSCFAHA 159

Query: 104 ---------------------WSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGY 142
                                W+AM+SGY++ G ++KA++ F+  PV+S+V+W A+++GY
Sbjct: 160 GDMCAAEECFEDAPDKENAVLWTAMVSGYMDSGHVEKAMQFFEAMPVRSLVSWNAVVAGY 219

Query: 143 MKFGYVENSWAEDGLKLLRMMI-GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKS 201
           +K     NS AED L + + M+    +RPN S+LSSVLLGCS+LS+L  G+QVHQ   K 
Sbjct: 220 VK-----NSRAEDALWVFKTMVRDADVRPNESTLSSVLLGCSNLSALGFGRQVHQWCTKL 274

Query: 202 PLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLF 261
           PL +  TA T L+SMYCKCGDL+ ACKLF E++ +DV+ WNAMISGYA HG G +A+ LF
Sbjct: 275 PLSRRVTAGTSLVSMYCKCGDLDGACKLFSEMRIRDVIAWNAMISGYAHHGDGREAIELF 334

Query: 262 DKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGR 321
           +KMK +G++P+ ITFVA+L AC H G+ D G+Q F+ M   YGI A+ DHY+CMVDLL R
Sbjct: 335 EKMKSQGVEPNWITFVAVLTACIHTGMCDFGMQCFERMQEVYGIEARVDHYSCMVDLLCR 394

Query: 322 AGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQ 381
           AG L  AV LI+ MPF+P P+ +GTLL+A RV+K ++ AEFAA  L   NP N AG YVQ
Sbjct: 395 AGSLERAVSLIRSMPFQPHPSAYGTLLNASRVYKNMEFAEFAAGKLIEQNPQN-AGAYVQ 453

Query: 382 LANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEK 441
           LANIYA   +W DV+R+R  MK+N VVK PGYSW+E+  V+H FRS DR+HP+L  IHE+
Sbjct: 454 LANIYAVANQWADVSRVRRWMKDNAVVKTPGYSWVEINGVIHVFRSNDRLHPQLSLIHER 513

Query: 442 LKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKN 501
           L +LE+RMK  GYVPDL+FALH V E +K Q+L+ HSEKLAIAFGL+    G  +R+FKN
Sbjct: 514 LCQLEERMKAMGYVPDLDFALHDVDESLKVQMLMRHSEKLAIAFGLLSTAPGITLRIFKN 573

Query: 502 LRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           LRVCGDCH A K IS IE REII+RDTTRFHHF+ G CSCGDYW
Sbjct: 574 LRVCGDCHTAAKLISKIEDREIILRDTTRFHHFRSGHCSCGDYW 617



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 57/241 (23%), Positives = 99/241 (41%), Gaps = 50/241 (20%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDK-IPQPDVVSYNIMLSCILLNSDDVVA-- 57
           M V++ V+WN+V+AG+ K   + +DA  +F   +   DV      LS +LL   ++ A  
Sbjct: 204 MPVRSLVSWNAVVAGYVKN-SRAEDALWVFKTMVRDADVRPNESTLSSVLLGCSNLSALG 262

Query: 58  ----AFDFFQRLPI-KDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYI 112
                  +  +LP+ +   +  +++S + +  ++  A  LF  M  ++ ++W+AMISGY 
Sbjct: 263 FGRQVHQWCTKLPLSRRVTAGTSLVSMYCKCGDLDGACKLFSEMRIRDVIAWNAMISGYA 322

Query: 113 ECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNA 172
             G   +A+ELF+                                     M   G+ PN 
Sbjct: 323 HHGDGREAIELFE------------------------------------KMKSQGVEPNW 346

Query: 173 SSLSSVLLGCSHLSSLQLGKQVH---QLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 229
            +  +VL  C H      G Q     Q V+      D  +   ++ + C+ G LE A  L
Sbjct: 347 ITFVAVLTACIHTGMCDFGMQCFERMQEVYGIEARVDHYSC--MVDLLCRAGSLERAVSL 404

Query: 230 F 230
            
Sbjct: 405 I 405


>gi|413938666|gb|AFW73217.1| hypothetical protein ZEAMMB73_724608 [Zea mays]
          Length = 610

 Score =  630 bits (1624), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 312/574 (54%), Positives = 393/574 (68%), Gaps = 32/574 (5%)

Query: 2   NVKTTVNWNSVLAGFAKQRG--KLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAF 59
            +KTT  +N +LAG+AK  G  +L DA+ LFD IP PD VSYN +LSC      D+  A 
Sbjct: 39  QLKTTTTYNCLLAGYAKASGLIRLADARRLFDSIPHPDTVSYNTLLSC-HFACGDIDGAR 97

Query: 60  DFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDK 119
             F  +P+KD  SWNTM+SG  +     +A  +F  MP +N+VSW+AM++     G +  
Sbjct: 98  RVFSTMPVKDVTSWNTMVSGLSKNGASEEAAAMFRIMPVRNAVSWNAMVAALACSGDMGA 157

Query: 120 AVELFKVAPVKS-VVAWTAMISGYMKF--------------------------GYVENSW 152
           A +LF+ AP K+  + WTAM+SGYM                            GYV+NS 
Sbjct: 158 AEDLFRNAPEKTDAILWTAMVSGYMDTGNVQKAMEFFGAMPVRNLVSWNAVVAGYVKNSR 217

Query: 153 AEDGLKLLRMMIGLGI-RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALT 211
           A+D L++ + M+   I +PNAS+LSSVLLGCS+LS+L  G+QVHQ   K PL ++ T  T
Sbjct: 218 ADDALRVFKTMVEDSIVQPNASTLSSVLLGCSNLSALGFGRQVHQWCMKLPLSRNVTVGT 277

Query: 212 PLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKP 271
            L+SMYCKCGDL DACK+F E+  KD+V WNAMISGYAQHG G +A++LF+KMKDEG+ P
Sbjct: 278 SLLSMYCKCGDLNDACKVFDEMSTKDIVAWNAMISGYAQHGGGMQAIKLFEKMKDEGVVP 337

Query: 272 DSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDL 331
           D IT +A+L AC H GL D GIQ F++M   Y I  + DHY+CMVDLL RAG L  AV++
Sbjct: 338 DWITLLAVLTACIHTGLCDFGIQCFETMQEAYKIEPQIDHYSCMVDLLCRAGLLERAVNM 397

Query: 332 IKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKK 391
           I  MPF+P P+ +GTLL+ACRV+K L+ AEFAA  L   +P N AG YVQLANIYA   K
Sbjct: 398 IHSMPFEPHPSAYGTLLTACRVYKNLEFAEFAARKLIEQDPQN-AGAYVQLANIYAVANK 456

Query: 392 WDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKL 451
           W DV+R+R  MK+N VVK PGYSW+E+  V HEFRS DR+HP+L  IH+KL  L+  MK 
Sbjct: 457 WADVSRVRRWMKDNAVVKTPGYSWMEIKGVRHEFRSNDRLHPQLGLIHDKLDRLQMLMKA 516

Query: 452 AGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRA 511
            GYVPDL+FALH V + +K Q+L+ HSEKLAIAFGLI    G  +R+FKNLR+CGDCH A
Sbjct: 517 MGYVPDLDFALHDVEDSLKSQMLMRHSEKLAIAFGLISTSPGMTLRIFKNLRICGDCHNA 576

Query: 512 TKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
            K IS IE REII+RDTTRFHHF+ G CSCGDYW
Sbjct: 577 AKLISKIEDREIILRDTTRFHHFRGGHCSCGDYW 610



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 78/149 (52%), Gaps = 10/149 (6%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNI-MLSCILLNSDDVVA-- 57
           M V+  V+WN+V+AG+ K   +  DA  +F  + +  +V  N   LS +LL   ++ A  
Sbjct: 197 MPVRNLVSWNAVVAGYVKN-SRADDALRVFKTMVEDSIVQPNASTLSSVLLGCSNLSALG 255

Query: 58  ----AFDFFQRLPIKDTASWNT-MISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYI 112
                  +  +LP+    +  T ++S + +  ++  A  +F  M  K+ V+W+AMISGY 
Sbjct: 256 FGRQVHQWCMKLPLSRNVTVGTSLLSMYCKCGDLNDACKVFDEMSTKDIVAWNAMISGYA 315

Query: 113 ECGQLDKAVELFKVAPVKSVVA-WTAMIS 140
           + G   +A++LF+    + VV  W  +++
Sbjct: 316 QHGGGMQAIKLFEKMKDEGVVPDWITLLA 344



 Score = 45.1 bits (105), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 53/221 (23%), Positives = 86/221 (38%), Gaps = 43/221 (19%)

Query: 221 GDLEDACKLFLEIQRKDVVTWNAMISGYAQHG---KGEKALRLFDKMKDEGMKPDSITFV 277
           GDL  A + F   Q K   T+N +++GYA+     +   A RLFD +      PD++++ 
Sbjct: 26  GDLAGAEEAFASTQLKTTTTYNCLLAGYAKASGLIRLADARRLFDSIP----HPDTVSY- 80

Query: 278 ALLLACNHA-GLVDLGIQYFDSM-VNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335
             LL+C+ A G +D   + F +M V D         +  MV  L + G   EA  + + M
Sbjct: 81  NTLLSCHFACGDIDGARRVFSTMPVKDV------TSWNTMVSGLSKNGASEEAAAMFRIM 134

Query: 336 P--------------------------FKPQPAIFGTLLSACRVHKRLDLAEFA-AMNLF 368
           P                          F+  P     +L    V   +D      AM  F
Sbjct: 135 PVRNAVSWNAMVAALACSGDMGAAEDLFRNAPEKTDAILWTAMVSGYMDTGNVQKAMEFF 194

Query: 369 NLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVK 409
              P      +  +   Y    + DD  R+  +M E+++V+
Sbjct: 195 GAMPVRNLVSWNAVVAGYVKNSRADDALRVFKTMVEDSIVQ 235


>gi|2245038|emb|CAB10457.1| hypothetical protein [Arabidopsis thaliana]
 gi|7268435|emb|CAB80955.1| hypothetical protein [Arabidopsis thaliana]
          Length = 851

 Score =  615 bits (1586), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 321/552 (58%), Positives = 387/552 (70%), Gaps = 60/552 (10%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  K T+ WNS+L G +K   ++ +A +LFD+IP+PD  SYNIMLSC + N +    A  
Sbjct: 87  MRAKNTITWNSLLIGISKDPSRMMEAHQLFDEIPEPDTFSYNIMLSCYVRNVN-FEKAQS 145

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
           FF R+P KD ASWNTMI+G+ ++  M KAR+LF +M EKN VSW+AMISGYIECG L+KA
Sbjct: 146 FFDRMPFKDAASWNTMITGYARRGEMEKARELFYSMMEKNEVSWNAMISGYIECGDLEKA 205

Query: 121 VELFKVAPVKSVVAWTAMISGYMKF---------------------------GYVENSWA 153
              FKVAPV+ VVAWTAMI+GYMK                            GYVENS  
Sbjct: 206 SHFFKVAPVRGVVAWTAMITGYMKAKKVELAEAMFKDMTVNKNLVTWNAMISGYVENSRP 265

Query: 154 EDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPL 213
           EDGLKL R M+  GIRPN+S LSS LLGC+                          LT L
Sbjct: 266 EDGLKLFRAMLEEGIRPNSSGLSSALLGCT--------------------------LTSL 299

Query: 214 ISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDS 273
           ISMYCKCG+L DA KLF  +++KDVV WNAMISGYAQHG  +KAL LF +M D  ++PD 
Sbjct: 300 ISMYCKCGELGDAWKLFEVMKKKDVVAWNAMISGYAQHGNADKALCLFREMIDNKIRPDW 359

Query: 274 ITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIK 333
           ITFVA+LLACNHAGLV++G+ YF+SMV DY +  +PDHYTCMVDLLGRAGKL EA+ LI+
Sbjct: 360 ITFVAVLLACNHAGLVNIGMAYFESMVRDYKVEPQPDHYTCMVDLLGRAGKLEEALKLIR 419

Query: 334 KMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWD 393
            MPF+P  A+FGTLL ACRVHK ++LAEFAA  L  LN  NAAG YVQLANIYA+  +W+
Sbjct: 420 SMPFRPHAAVFGTLLGACRVHKNVELAEFAAEKLLQLNSQNAAG-YVQLANIYASKNRWE 478

Query: 394 DVARIRLSMKENNV-----VKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKR 448
           DVAR+R  MKE+NV     VK+PGYSWIE+   VH FRS DR+HPEL SIH+KLKELEK+
Sbjct: 479 DVARVRKRMKESNVVKVERVKVPGYSWIEIRNKVHHFRSSDRIHPELDSIHKKLKELEKK 538

Query: 449 MKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDC 508
           MKLAGY P+LEFALH V EE KE+LLL+HSEKLA+AFG IK+P G+ I+VFKNLR+C   
Sbjct: 539 MKLAGYKPELEFALHNVEEEQKEKLLLWHSEKLAVAFGCIKLPQGSQIQVFKNLRICASG 598

Query: 509 HRATKYISAIEK 520
            R   +  A  +
Sbjct: 599 SRVLDHFPATSR 610


>gi|297607983|ref|NP_001061009.2| Os08g0153600 [Oryza sativa Japonica Group]
 gi|255678154|dbj|BAF22923.2| Os08g0153600 [Oryza sativa Japonica Group]
          Length = 551

 Score =  547 bits (1410), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 271/502 (53%), Positives = 346/502 (68%), Gaps = 30/502 (5%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQ 63
           KTT  +N +LAG+A+  G+L DA+ LFD+IP PD VSYN +LSC    S D   A   F 
Sbjct: 46  KTTATYNCLLAGYARALGRLADARHLFDRIPTPDAVSYNTLLSC-HFASGDADGARRLFA 104

Query: 64  RLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVEL 123
            +P++D  SWNTM+SG  +   + +A+ +FLAMP +NSVSW+AM+SG+     +  A E 
Sbjct: 105 SMPVRDVVSWNTMVSGLSKSGAVEEAKAVFLAMPVRNSVSWNAMVSGFACSRDMSAAEEW 164

Query: 124 FKVAPVKS-VVAWTAMISGYMKFG--------------------------YVENSWAEDG 156
           F+ AP K   V WTAM+SGYM  G                          YV+NS A+D 
Sbjct: 165 FRNAPEKGDAVLWTAMVSGYMDIGNVVKAIEYFEAMPVRNLVSWNAVVAGYVKNSHADDA 224

Query: 157 LKLLRMMI-GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLIS 215
           L+L R M+    ++PNAS+LSSVLLGCS+LS+L  GKQ+HQ   K PL ++ T  T L+S
Sbjct: 225 LRLFRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQIHQWCMKLPLSRNLTVGTSLVS 284

Query: 216 MYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSIT 275
           MYCKCGDL  ACKLF E+  +DVV WNAMISGYAQHG G++A+ LF++MKDEG++P+ IT
Sbjct: 285 MYCKCGDLSSACKLFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWIT 344

Query: 276 FVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335
           FVA+L AC H GL D GI+ F+ M   YGI  + DHY+CMVDLL RAGKL  AVDLI+ M
Sbjct: 345 FVAVLTACIHTGLCDFGIRCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLERAVDLIRSM 404

Query: 336 PFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDV 395
           PF+P P+ +GTLL+ACRV+K L+ AE AA  L   +P  +AG YVQLANIYA   +WDDV
Sbjct: 405 PFEPHPSAYGTLLAACRVYKNLEFAELAAGKLIEKDP-QSAGAYVQLANIYAGANQWDDV 463

Query: 396 ARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYV 455
           +R+R  MK+N VVK PGYSWIE+  V+HEFRS DR+HP+L  IHEKL +L +RMK  GYV
Sbjct: 464 SRVRRWMKDNAVVKTPGYSWIEIKGVMHEFRSNDRLHPQLYLIHEKLGQLAERMKAMGYV 523

Query: 456 PDLEFALHAVGEEVKEQLLLFH 477
           PDL+F LH V E +K Q+L+ H
Sbjct: 524 PDLDFVLHDVDETLKVQMLMRH 545



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 72/275 (26%), Positives = 124/275 (45%), Gaps = 55/275 (20%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQP-DVVSYNIMLSCILLNSDDVVAAF 59
           M V+ +V+WN++++GFA  R  +  A+E F   P+  D V +  M+S   ++  +VV A 
Sbjct: 137 MPVRNSVSWNAMVSGFACSR-DMSAAEEWFRNAPEKGDAVLWTAMVSG-YMDIGNVVKAI 194

Query: 60  DFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM-------PEKNSVS--------- 103
           ++F+ +P+++  SWN +++G+V+  +   A  LF  M       P  +++S         
Sbjct: 195 EYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNL 254

Query: 104 -----------W-------------SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMI 139
                      W             ++++S Y +CG L  A +LF     + VVAW AMI
Sbjct: 255 SALGFGKQIHQWCMKLPLSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTRDVVAWNAMI 314

Query: 140 SGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLG----KQVH 195
           SGY + G       ++ + L   M   G+ PN  +  +VL  C H      G    + + 
Sbjct: 315 SGYAQHGD-----GKEAINLFERMKDEGVEPNWITFVAVLTACIHTGLCDFGIRCFEGMQ 369

Query: 196 QLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 230
           +L    P     + +  L+   C+ G LE A  L 
Sbjct: 370 ELYGIEPRVDHYSCMVDLL---CRAGKLERAVDLI 401



 Score = 45.1 bits (105), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 57/120 (47%), Gaps = 12/120 (10%)

Query: 221 GDLEDACKLFLEIQRKDVVTWNAMISGYAQH-GKGEKALRLFDKMKDEGMKPDSITFVAL 279
           GDL  A + F    RK   T+N +++GYA+  G+   A  LFD++      PD++++  L
Sbjct: 31  GDLTGAEEAFASTPRKTTATYNCLLAGYARALGRLADARHLFDRIP----TPDAVSYNTL 86

Query: 280 LLACNHAGLVDLGIQYFDSM-VNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 338
           L     +G  D   + F SM V D         +  MV  L ++G + EA  +   MP +
Sbjct: 87  LSCHFASGDADGARRLFASMPVRDV------VSWNTMVSGLSKSGAVEEAKAVFLAMPVR 140


>gi|125563252|gb|EAZ08632.1| hypothetical protein OsI_30906 [Oryza sativa Indica Group]
          Length = 755

 Score =  544 bits (1401), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 263/566 (46%), Positives = 374/566 (66%), Gaps = 29/566 (5%)

Query: 6   TVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRL 65
            ++WN++++G+  Q GK+ +A+ELFD++P  DVVS+NIM+S       D+V A   F   
Sbjct: 193 AISWNALMSGYV-QWGKMSEARELFDRMPGRDVVSWNIMVSG-YARRGDMVEARRLFDAA 250

Query: 66  PIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFK 125
           P++D  +W  ++SG+ Q   + +AR +F AMPE+N+VSW+AM++ YI+   +D+A ELF 
Sbjct: 251 PVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFN 310

Query: 126 VAPVKSVVAWTAMISGYMKFGYVEN--------------SWA------------EDGLKL 159
           + P ++V +W  M++GY + G +E               SWA            E+ L+L
Sbjct: 311 MMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQL 370

Query: 160 LRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCK 219
              M   G   N S+ + VL  C+ +++L+ G Q+H  + ++           L++MY K
Sbjct: 371 FIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFK 430

Query: 220 CGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVAL 279
           CG++EDA   F E++ +DVV+WN MI+GYA+HG G++AL +FD M+    KPD IT V +
Sbjct: 431 CGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGV 490

Query: 280 LLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKP 339
           L AC+H+GLV+ GI YF SM +D+G+ AKP+HYTCM+DLLGRAG+L EA DL+K MPF+P
Sbjct: 491 LAACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEP 550

Query: 340 QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIR 399
              ++G LL A R+H+  +L   AA  +F L P NA G YV L+NIYA+  KW D  ++R
Sbjct: 551 DSTMWGALLGASRIHRNPELGRSAAEKIFELEPENA-GMYVLLSNIYASSGKWRDARKMR 609

Query: 400 LSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLE 459
           + M+E  V K+PG+SWIEV   VH F +GD VHPE   I+  L++L+ RMK AGYV   +
Sbjct: 610 VMMEERGVKKVPGFSWIEVQNKVHTFSAGDCVHPEKEKIYAFLEDLDMRMKKAGYVSATD 669

Query: 460 FALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIE 519
             LH V EE KE +L +HSEKLA+A+G++ +P G PIRV KNLRVCGDCH A KYISAIE
Sbjct: 670 MVLHDVEEEEKEHMLKYHSEKLAVAYGILNIPPGRPIRVIKNLRVCGDCHNAFKYISAIE 729

Query: 520 KREIIVRDTTRFHHFKDGTCSCGDYW 545
            R I++RD+ RFHHF+ G+CSCGDYW
Sbjct: 730 GRLILLRDSNRFHHFRGGSCSCGDYW 755



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 93/307 (30%), Positives = 157/307 (51%), Gaps = 16/307 (5%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M V+ +V +N +++  A   G +  A+  FD  P+ D VS+N ML+  + N   V  A  
Sbjct: 126 MPVRDSVTYNVMISSHANH-GLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGR-VEEARG 183

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
            F      D  SWN ++SG+VQ   M++AR+LF  MP ++ VSW+ M+SGY   G + +A
Sbjct: 184 LFNSRTEWDAISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEA 243

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLL 180
             LF  APV+ V  WTA++SGY + G +E +         R +       NA S ++++ 
Sbjct: 244 RRLFDAAPVRDVFTWTAVVSGYAQNGMLEEA---------RRVFDAMPERNAVSWNAMVA 294

Query: 181 GCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVT 240
                  +   K+    +F    C++  +   +++ Y + G LE+A  +F  + +KD V+
Sbjct: 295 AYIQRRMMDEAKE----LFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVS 350

Query: 241 WNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV 300
           W AM++ Y+Q G  E+ L+LF +M   G   +   F  +L  C     ++ G+Q    ++
Sbjct: 351 WAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLI 410

Query: 301 N-DYGIA 306
              YG+ 
Sbjct: 411 RAGYGVG 417



 Score =  138 bits (347), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 91/338 (26%), Positives = 167/338 (49%), Gaps = 55/338 (16%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  ++T  +N++LAG++   G+L  A  LF  IP+PD  SYN +L  + ++S  +  A  
Sbjct: 64  MPRRSTSTYNAMLAGYSAN-GRLPLAASLFRAIPRPDNYSYNTLLHALAVSSS-LADARG 121

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
            F  +P++D+ ++N MIS       ++ AR  F   PEK++VSW+ M++ Y+  G++++A
Sbjct: 122 LFDEMPVRDSVTYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEA 181

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLL 180
             LF        ++W A++SGY+++G +                                
Sbjct: 182 RGLFNSRTEWDAISWNALMSGYVQWGKM-------------------------------- 209

Query: 181 GCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVT 240
                       +  +L  + P  +D  +   ++S Y + GD+ +A +LF     +DV T
Sbjct: 210 -----------SEARELFDRMP-GRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFT 257

Query: 241 WNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV 300
           W A++SGYAQ+G  E+A R+FD M +     +++++ A++ A     ++D   + F+ M+
Sbjct: 258 WTAVVSGYAQNGMLEEARRVFDAMPER----NAVSWNAMVAAYIQRRMMDEAKELFN-MM 312

Query: 301 NDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 338
               +A+    +  M+    +AG L EA  +   MP K
Sbjct: 313 PCRNVAS----WNTMLTGYAQAGMLEEAKAVFDTMPQK 346


>gi|48716903|dbj|BAD23598.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 755

 Score =  543 bits (1400), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 263/565 (46%), Positives = 374/565 (66%), Gaps = 29/565 (5%)

Query: 7   VNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP 66
           ++WN++++G+  Q GK+ +A+ELFD++P  DVVS+NIM+S       D+V A   F   P
Sbjct: 194 ISWNALMSGYV-QWGKMSEARELFDRMPGRDVVSWNIMVSG-YARRGDMVEARRLFDAAP 251

Query: 67  IKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKV 126
           ++D  +W  ++SG+ Q   + +AR +F AMPE+N+VSW+AM++ YI+   +D+A ELF +
Sbjct: 252 VRDVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNM 311

Query: 127 APVKSVVAWTAMISGYMKFGYVEN--------------SWA------------EDGLKLL 160
            P ++V +W  M++GY + G +E               SWA            E+ L+L 
Sbjct: 312 MPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLF 371

Query: 161 RMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKC 220
             M   G   N S+ + VL  C+ +++L+ G Q+H  + ++           L++MY KC
Sbjct: 372 IEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKC 431

Query: 221 GDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 280
           G++EDA   F E++ +DVV+WN MI+GYA+HG G++AL +FD M+    KPD IT V +L
Sbjct: 432 GNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVL 491

Query: 281 LACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQ 340
            AC+H+GLV+ GI YF SM +D+G+ AKP+HYTCM+DLLGRAG+L EA DL+K MPF+P 
Sbjct: 492 AACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPD 551

Query: 341 PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRL 400
             ++G LL A R+H+  +L   AA  +F L P NA G YV L+NIYA+  KW D  ++R+
Sbjct: 552 STMWGALLGASRIHRNPELGRSAAEKIFELEPENA-GMYVLLSNIYASSGKWRDARKMRV 610

Query: 401 SMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEF 460
            M+E  V K+PG+SWIEV   VH F +GD VHPE   I+  L++L+ RMK AGYV   + 
Sbjct: 611 MMEERGVKKVPGFSWIEVQNKVHTFSAGDCVHPEKEKIYAFLEDLDMRMKKAGYVSATDM 670

Query: 461 ALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEK 520
            LH V EE KE +L +HSEKLA+A+G++ +P G PIRV KNLRVCGDCH A KYISAIE 
Sbjct: 671 VLHDVEEEEKEHMLKYHSEKLAVAYGILNIPPGRPIRVIKNLRVCGDCHNAFKYISAIEG 730

Query: 521 REIIVRDTTRFHHFKDGTCSCGDYW 545
           R I++RD+ RFHHF+ G+CSCGDYW
Sbjct: 731 RLILLRDSNRFHHFRGGSCSCGDYW 755



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 93/307 (30%), Positives = 157/307 (51%), Gaps = 16/307 (5%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M V+ +V +N +++  A   G +  A+  FD  P+ D VS+N ML+  + N   V  A  
Sbjct: 126 MPVRDSVTYNVMISSHANH-GLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGR-VEEARG 183

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
            F      D  SWN ++SG+VQ   M++AR+LF  MP ++ VSW+ M+SGY   G + +A
Sbjct: 184 LFNSRTEWDVISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEA 243

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLL 180
             LF  APV+ V  WTA++SGY + G +E +         R +       NA S ++++ 
Sbjct: 244 RRLFDAAPVRDVFTWTAVVSGYAQNGMLEEA---------RRVFDAMPERNAVSWNAMVA 294

Query: 181 GCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVT 240
                  +   K+    +F    C++  +   +++ Y + G LE+A  +F  + +KD V+
Sbjct: 295 AYIQRRMMDEAKE----LFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVS 350

Query: 241 WNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV 300
           W AM++ Y+Q G  E+ L+LF +M   G   +   F  +L  C     ++ G+Q    ++
Sbjct: 351 WAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLI 410

Query: 301 N-DYGIA 306
              YG+ 
Sbjct: 411 RAGYGVG 417



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 92/338 (27%), Positives = 168/338 (49%), Gaps = 55/338 (16%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  ++T  +N++LAG++   G+L  A  LF  IP+PD  SYN +L  + ++S  +  A  
Sbjct: 64  MPRRSTSTYNAMLAGYSAN-GRLPLAASLFRAIPRPDNYSYNTLLHALAVSSS-LADARG 121

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
            F  +P++D+ ++N MIS       ++ AR  F   PEK++VSW+ M++ Y+  G++++A
Sbjct: 122 LFDEMPVRDSVTYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEA 181

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLL 180
             LF       V++W A++SGY+++G +                                
Sbjct: 182 RGLFNSRTEWDVISWNALMSGYVQWGKM-------------------------------- 209

Query: 181 GCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVT 240
                       +  +L  + P  +D  +   ++S Y + GD+ +A +LF     +DV T
Sbjct: 210 -----------SEARELFDRMP-GRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFT 257

Query: 241 WNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV 300
           W A++SGYAQ+G  E+A R+FD M +     +++++ A++ A     ++D   + F+ M+
Sbjct: 258 WTAVVSGYAQNGMLEEARRVFDAMPER----NAVSWNAMVAAYIQRRMMDEAKELFN-MM 312

Query: 301 NDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 338
               +A+    +  M+    +AG L EA  +   MP K
Sbjct: 313 PCRNVAS----WNTMLTGYAQAGMLEEAKAVFDTMPQK 346


>gi|359491499|ref|XP_003634283.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 766

 Score =  543 bits (1398), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 262/565 (46%), Positives = 366/565 (64%), Gaps = 29/565 (5%)

Query: 7   VNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP 66
           ++WN ++ G+ K R +L DA+ +FD++P+ D VS+N M+S    N + ++ A   F+  P
Sbjct: 205 ISWNCMMGGYVK-RNRLVDARGIFDRMPERDEVSWNTMISGYAQNGE-LLEAQRLFEESP 262

Query: 67  IKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKV 126
           ++D  +W  M+SG+VQ   + +AR +F  MPEKNSVSW+A+I+GY++C ++D+A ELF+ 
Sbjct: 263 VRDVFTWTAMVSGYVQNGMLDEARRVFDGMPEKNSVSWNAIIAGYVQCKRMDQARELFEA 322

Query: 127 APVKSVVAWTAMISGYMK--------------------------FGYVENSWAEDGLKLL 160
            P ++V +W  MI+GY +                           GY ++ + E+ L L 
Sbjct: 323 MPCQNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLF 382

Query: 161 RMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKC 220
             M   G R N S+ +S L  C+ +++L+LGKQVH  V K+ L         L+ MYCKC
Sbjct: 383 VEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKC 442

Query: 221 GDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 280
           G+++DA  +F  I+ K+VV+WN MI+GYA+HG G++AL LF+ MK  G+ PD +T V +L
Sbjct: 443 GNIDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVL 502

Query: 281 LACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQ 340
            AC+H GLVD G +YF SM  DYGI A   HYTCM+DLLGRAG+L +A +L+K MPF+P 
Sbjct: 503 SACSHTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPD 562

Query: 341 PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRL 400
            A +G LL A R+H   +L E AA  +F + P N +G YV L+N+YAA  +W DV R+RL
Sbjct: 563 AATWGALLGASRIHGNTELGEKAAKMIFEMEPDN-SGMYVLLSNLYAASGRWGDVGRMRL 621

Query: 401 SMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEF 460
            M++  V K+PGYSW+EV   +H F  GD VHPE   I+  L+EL+ +MK  GYV   + 
Sbjct: 622 RMRDRGVKKVPGYSWVEVQNKIHTFTVGDSVHPERDRIYTFLEELDLKMKKEGYVSSTKL 681

Query: 461 ALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEK 520
            LH V EE K  +L +HSEKLA+AFG++ +P G PIRV KNLRVC DCH A K+IS I  
Sbjct: 682 VLHDVEEEEKVHMLKYHSEKLAVAFGILAIPAGRPIRVIKNLRVCEDCHNAMKHISKIVG 741

Query: 521 REIIVRDTTRFHHFKDGTCSCGDYW 545
           R II+RD+ RFHHF  G CSCGDYW
Sbjct: 742 RLIILRDSHRFHHFNGGQCSCGDYW 766



 Score =  181 bits (459), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 97/300 (32%), Positives = 175/300 (58%), Gaps = 15/300 (5%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  +  V+WN++L+G+A Q G +K+A+E+FD++P  + +S+N ML+  + N   +  A  
Sbjct: 137 MPERDVVSWNAMLSGYA-QNGYVKEAKEIFDEMPCKNSISWNGMLAAYVQNGR-IEDARR 194

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
            F+     +  SWN M+ G+V++  +  AR +F  MPE++ VSW+ MISGY + G+L +A
Sbjct: 195 LFESKADWELISWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEA 254

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLL 180
             LF+ +PV+ V  WTAM+SGY++ G ++ +         R+  G+    N+ S ++++ 
Sbjct: 255 QRLFEESPVRDVFTWTAMVSGYVQNGMLDEA--------RRVFDGMP-EKNSVSWNAIIA 305

Query: 181 GCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVT 240
           G      +   ++    +F++  C++ ++   +I+ Y + GD+  A   F  + ++D ++
Sbjct: 306 GYVQCKRMDQARE----LFEAMPCQNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSIS 361

Query: 241 WNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV 300
           W A+I+GYAQ G GE+AL LF +MK +G + +  TF + L  C     ++LG Q    +V
Sbjct: 362 WAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVV 421



 Score =  155 bits (392), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 96/331 (29%), Positives = 167/331 (50%), Gaps = 26/331 (7%)

Query: 7   VNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP 66
           V WN  +    +  G+   A  LF+ +P+   +S+N M+S  L N D    A   F+++P
Sbjct: 50  VKWNIAITNHMRN-GQCDSALRLFNSMPRRSSISWNAMISGCLSN-DKFYLARQLFEKMP 107

Query: 67  IKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKV 126
            +D  SWN MISG V+ +N+  AR LF  MPE++ VSW+AM+SGY + G + +A E+F  
Sbjct: 108 TRDLVSWNVMISGCVRYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDE 167

Query: 127 APVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLS 186
            P K+ ++W  M++      YV+N   ED  +L           + +    +   C    
Sbjct: 168 MPCKNSISWNGMLA-----AYVQNGRIEDARRLF---------ESKADWELISWNCMMGG 213

Query: 187 SLQLGKQVH-QLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMI 245
            ++  + V  + +F     +D  +   +IS Y + G+L +A +LF E   +DV TW AM+
Sbjct: 214 YVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEESPVRDVFTWTAMV 273

Query: 246 SGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGI 305
           SGY Q+G  ++A R+FD M ++    +S+++ A++        +D   + F++M      
Sbjct: 274 SGYVQNGMLDEARRVFDGMPEK----NSVSWNAIIAGYVQCKRMDQARELFEAMP----- 324

Query: 306 AAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 336
                 +  M+    + G + +A +   +MP
Sbjct: 325 CQNVSSWNTMITGYAQNGDIAQARNFFDRMP 355



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 105/466 (22%), Positives = 201/466 (43%), Gaps = 54/466 (11%)

Query: 69  DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAP 128
           D   WN  I+  ++      A  LF +MP ++S+SW+AMISG +   +   A +LF+  P
Sbjct: 48  DIVKWNIAITNHMRNGQCDSALRLFNSMPRRSSISWNAMISGCLSNDKFYLARQLFEKMP 107

Query: 129 VKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSL 188
            + +V+W  MISG +++           L+  R++       +  S +++L G +    +
Sbjct: 108 TRDLVSWNVMISGCVRY---------RNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYV 158

Query: 189 QLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGY 248
           +  K+    +F    CK++ +   +++ Y + G +EDA +LF      ++++WN M+ GY
Sbjct: 159 KEAKE----IFDEMPCKNSISWNGMLAAYVQNGRIEDARRLFESKADWELISWNCMMGGY 214

Query: 249 AQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG-LVDLGIQYFDSMVNDYGIAA 307
            +  +   A  +FD+M +     D +++  ++      G L++    + +S V D     
Sbjct: 215 VKRNRLVDARGIFDRMPER----DEVSWNTMISGYAQNGELLEAQRLFEESPVRDVFT-- 268

Query: 308 KPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNL 367
               +T MV    + G L EA  +   MP K   + +  +++     KR+D A      L
Sbjct: 269 ----WTAMVSGYVQNGMLDEARRVFDGMPEKNSVS-WNAIIAGYVQCKRMDQAR----EL 319

Query: 368 FNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEF-R 426
           F   P      +  +   YA      D+A+ R     N   +MP    I    ++  + +
Sbjct: 320 FEAMPCQNVSSWNTMITGYAQN---GDIAQAR-----NFFDRMPQRDSISWAAIIAGYAQ 371

Query: 427 SGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFG 486
           SG     E + +  ++K   +R+  + +   L         E+ +Q+   H         
Sbjct: 372 SG--YGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALELGKQV---HGR------- 419

Query: 487 LIKVPLGTPIRVFKNLRV----CGDCHRATKYISAIEKREIIVRDT 528
           ++K  L +   V   L V    CG+   A      IE++E++  +T
Sbjct: 420 VVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEKEVVSWNT 465


>gi|125605235|gb|EAZ44271.1| hypothetical protein OsJ_28890 [Oryza sativa Japonica Group]
          Length = 630

 Score =  542 bits (1397), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 263/565 (46%), Positives = 374/565 (66%), Gaps = 29/565 (5%)

Query: 7   VNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP 66
           ++WN++++G+  Q GK+ +A+ELFD++P  DVVS+NIM+S       D+V A   F   P
Sbjct: 69  ISWNALMSGYV-QWGKMSEARELFDRMPGRDVVSWNIMVSG-YARRGDMVEARRLFDAAP 126

Query: 67  IKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKV 126
           ++D  +W  ++SG+ Q   + +AR +F AMPE+N+VSW+AM++ YI+   +D+A ELF +
Sbjct: 127 VRDVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNM 186

Query: 127 APVKSVVAWTAMISGYMKFGYVEN--------------SWA------------EDGLKLL 160
            P ++V +W  M++GY + G +E               SWA            E+ L+L 
Sbjct: 187 MPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLF 246

Query: 161 RMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKC 220
             M   G   N S+ + VL  C+ +++L+ G Q+H  + ++           L++MY KC
Sbjct: 247 IEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKC 306

Query: 221 GDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 280
           G++EDA   F E++ +DVV+WN MI+GYA+HG G++AL +FD M+    KPD IT V +L
Sbjct: 307 GNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVL 366

Query: 281 LACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQ 340
            AC+H+GLV+ GI YF SM +D+G+ AKP+HYTCM+DLLGRAG+L EA DL+K MPF+P 
Sbjct: 367 AACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPD 426

Query: 341 PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRL 400
             ++G LL A R+H+  +L   AA  +F L P NA G YV L+NIYA+  KW D  ++R+
Sbjct: 427 STMWGALLGASRIHRNPELGRSAAEKIFELEPENA-GMYVLLSNIYASSGKWRDARKMRV 485

Query: 401 SMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEF 460
            M+E  V K+PG+SWIEV   VH F +GD VHPE   I+  L++L+ RMK AGYV   + 
Sbjct: 486 MMEERGVKKVPGFSWIEVQNKVHTFSAGDCVHPEKEKIYAFLEDLDMRMKKAGYVSATDM 545

Query: 461 ALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEK 520
            LH V EE KE +L +HSEKLA+A+G++ +P G PIRV KNLRVCGDCH A KYISAIE 
Sbjct: 546 VLHDVEEEEKEHMLKYHSEKLAVAYGILNIPPGRPIRVIKNLRVCGDCHNAFKYISAIEG 605

Query: 521 REIIVRDTTRFHHFKDGTCSCGDYW 545
           R I++RD+ RFHHF+ G+CSCGDYW
Sbjct: 606 RLILLRDSNRFHHFRGGSCSCGDYW 630



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 93/307 (30%), Positives = 157/307 (51%), Gaps = 16/307 (5%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M V+ +V +N +++  A   G +  A+  FD  P+ D VS+N ML+  + N   V  A  
Sbjct: 1   MPVRDSVTYNVMISSHANH-GLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGR-VEEARG 58

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
            F      D  SWN ++SG+VQ   M++AR+LF  MP ++ VSW+ M+SGY   G + +A
Sbjct: 59  LFNSRTEWDVISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEA 118

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLL 180
             LF  APV+ V  WTA++SGY + G +E +         R +       NA S ++++ 
Sbjct: 119 RRLFDAAPVRDVFTWTAVVSGYAQNGMLEEA---------RRVFDAMPERNAVSWNAMVA 169

Query: 181 GCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVT 240
                  +   K+    +F    C++  +   +++ Y + G LE+A  +F  + +KD V+
Sbjct: 170 AYIQRRMMDEAKE----LFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVS 225

Query: 241 WNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV 300
           W AM++ Y+Q G  E+ L+LF +M   G   +   F  +L  C     ++ G+Q    ++
Sbjct: 226 WAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLI 285

Query: 301 N-DYGIA 306
              YG+ 
Sbjct: 286 RAGYGVG 292


>gi|297734304|emb|CBI15551.3| unnamed protein product [Vitis vinifera]
          Length = 685

 Score =  541 bits (1394), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 262/565 (46%), Positives = 366/565 (64%), Gaps = 29/565 (5%)

Query: 7   VNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP 66
           ++WN ++ G+ K R +L DA+ +FD++P+ D VS+N M+S    N + ++ A   F+  P
Sbjct: 124 ISWNCMMGGYVK-RNRLVDARGIFDRMPERDEVSWNTMISGYAQNGE-LLEAQRLFEESP 181

Query: 67  IKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKV 126
           ++D  +W  M+SG+VQ   + +AR +F  MPEKNSVSW+A+I+GY++C ++D+A ELF+ 
Sbjct: 182 VRDVFTWTAMVSGYVQNGMLDEARRVFDGMPEKNSVSWNAIIAGYVQCKRMDQARELFEA 241

Query: 127 APVKSVVAWTAMISGYMK--------------------------FGYVENSWAEDGLKLL 160
            P ++V +W  MI+GY +                           GY ++ + E+ L L 
Sbjct: 242 MPCQNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLF 301

Query: 161 RMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKC 220
             M   G R N S+ +S L  C+ +++L+LGKQVH  V K+ L         L+ MYCKC
Sbjct: 302 VEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKC 361

Query: 221 GDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 280
           G+++DA  +F  I+ K+VV+WN MI+GYA+HG G++AL LF+ MK  G+ PD +T V +L
Sbjct: 362 GNIDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVL 421

Query: 281 LACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQ 340
            AC+H GLVD G +YF SM  DYGI A   HYTCM+DLLGRAG+L +A +L+K MPF+P 
Sbjct: 422 SACSHTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPD 481

Query: 341 PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRL 400
            A +G LL A R+H   +L E AA  +F + P N +G YV L+N+YAA  +W DV R+RL
Sbjct: 482 AATWGALLGASRIHGNTELGEKAAKMIFEMEPDN-SGMYVLLSNLYAASGRWGDVGRMRL 540

Query: 401 SMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEF 460
            M++  V K+PGYSW+EV   +H F  GD VHPE   I+  L+EL+ +MK  GYV   + 
Sbjct: 541 RMRDRGVKKVPGYSWVEVQNKIHTFTVGDSVHPERDRIYTFLEELDLKMKKEGYVSSTKL 600

Query: 461 ALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEK 520
            LH V EE K  +L +HSEKLA+AFG++ +P G PIRV KNLRVC DCH A K+IS I  
Sbjct: 601 VLHDVEEEEKVHMLKYHSEKLAVAFGILAIPAGRPIRVIKNLRVCEDCHNAMKHISKIVG 660

Query: 521 REIIVRDTTRFHHFKDGTCSCGDYW 545
           R II+RD+ RFHHF  G CSCGDYW
Sbjct: 661 RLIILRDSHRFHHFNGGQCSCGDYW 685



 Score =  182 bits (461), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 97/300 (32%), Positives = 175/300 (58%), Gaps = 15/300 (5%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  +  V+WN++L+G+A Q G +K+A+E+FD++P  + +S+N ML+  + N   +  A  
Sbjct: 56  MPERDVVSWNAMLSGYA-QNGYVKEAKEIFDEMPCKNSISWNGMLAAYVQNGR-IEDARR 113

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
            F+     +  SWN M+ G+V++  +  AR +F  MPE++ VSW+ MISGY + G+L +A
Sbjct: 114 LFESKADWELISWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEA 173

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLL 180
             LF+ +PV+ V  WTAM+SGY++ G ++ +         R+  G+    N+ S ++++ 
Sbjct: 174 QRLFEESPVRDVFTWTAMVSGYVQNGMLDEA--------RRVFDGM-PEKNSVSWNAIIA 224

Query: 181 GCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVT 240
           G      +   ++    +F++  C++ ++   +I+ Y + GD+  A   F  + ++D ++
Sbjct: 225 GYVQCKRMDQARE----LFEAMPCQNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSIS 280

Query: 241 WNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV 300
           W A+I+GYAQ G GE+AL LF +MK +G + +  TF + L  C     ++LG Q    +V
Sbjct: 281 WAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVV 340


>gi|15235498|ref|NP_192184.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213324|sp|Q9SY02.1|PP301_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g02750
 gi|4263522|gb|AAD15348.1| hypothetical protein [Arabidopsis thaliana]
 gi|7269760|emb|CAB77760.1| hypothetical protein [Arabidopsis thaliana]
 gi|332656824|gb|AEE82224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 781

 Score =  541 bits (1393), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 262/545 (48%), Positives = 361/545 (66%), Gaps = 8/545 (1%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           MNV+  V+WN+++ G+A Q GK+ +A++LFD+ P  DV ++  M+S  + N   V  A +
Sbjct: 245 MNVRDVVSWNTIITGYA-QSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRM-VEEARE 302

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
            F ++P ++  SWN M++G+VQ + M  A++LF  MP +N  +W+ MI+GY +CG++ +A
Sbjct: 303 LFDKMPERNEVSWNAMLAGYVQGERMEMAKELFDVMPCRNVSTWNTMITGYAQCGKISEA 362

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLL 180
             LF   P +  V+W AMI+GY + G+     + + L+L   M   G R N SS SS L 
Sbjct: 363 KNLFDKMPKRDPVSWAAMIAGYSQSGH-----SFEALRLFVQMEREGGRLNRSSFSSALS 417

Query: 181 GCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVT 240
            C+ + +L+LGKQ+H  + K            L+ MYCKCG +E+A  LF E+  KD+V+
Sbjct: 418 TCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVS 477

Query: 241 WNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV 300
           WN MI+GY++HG GE ALR F+ MK EG+KPD  T VA+L AC+H GLVD G QYF +M 
Sbjct: 478 WNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFYTMT 537

Query: 301 NDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLA 360
            DYG+     HY CMVDLLGRAG L +A +L+K MPF+P  AI+GTLL A RVH   +LA
Sbjct: 538 QDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELA 597

Query: 361 EFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGT 420
           E AA  +F + P N+ G YV L+N+YA+  +W DV ++R+ M++  V K+PGYSWIE+  
Sbjct: 598 ETAADKIFAMEPENS-GMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQN 656

Query: 421 VVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEK 480
             H F  GD  HPE   I   L+EL+ RMK AGYV      LH V EE KE+++ +HSE+
Sbjct: 657 KTHTFSVGDEFHPEKDEIFAFLEELDLRMKKAGYVSKTSVVLHDVEEEEKERMVRYHSER 716

Query: 481 LAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCS 540
           LA+A+G+++V  G PIRV KNLRVC DCH A KY++ I  R II+RD  RFHHFKDG+CS
Sbjct: 717 LAVAYGIMRVSSGRPIRVIKNLRVCEDCHNAIKYMARITGRLIILRDNNRFHHFKDGSCS 776

Query: 541 CGDYW 545
           CGDYW
Sbjct: 777 CGDYW 781



 Score =  161 bits (408), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 105/344 (30%), Positives = 176/344 (51%), Gaps = 29/344 (8%)

Query: 9   WNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK 68
           WN  ++ + +  G+  +A  +F ++P+   VSYN M+S  L N +  +A    F  +P +
Sbjct: 67  WNVAISSYMRT-GRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFELAR-KLFDEMPER 124

Query: 69  DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAP 128
           D  SWN MI G+V+ +N+ KAR+LF  MPE++  SW+ M+SGY + G +D A  +F   P
Sbjct: 125 DLVSWNVMIKGYVRNRNLGKARELFEIMPERDVCSWNTMLSGYAQNGCVDDARSVFDRMP 184

Query: 129 VKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNAS--SLSSVLLGCSHLS 186
            K+ V+W A++S      YV+NS  E+   L +       R N +  S + +L G     
Sbjct: 185 EKNDVSWNALLS-----AYVQNSKMEEACMLFKS------RENWALVSWNCLLGGFVKKK 233

Query: 187 SLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMIS 246
            +   +Q     F S   +D  +   +I+ Y + G +++A +LF E   +DV TW AM+S
Sbjct: 234 KIVEARQ----FFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWTAMVS 289

Query: 247 GYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIA 306
           GY Q+   E+A  LFDKM +     + +++ A+L        +++  + FD M       
Sbjct: 290 GYIQNRMVEEARELFDKMPER----NEVSWNAMLAGYVQGERMEMAKELFDVMP-----C 340

Query: 307 AKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSA 350
                +  M+    + GK+ EA +L  KMP K  P  +  +++ 
Sbjct: 341 RNVSTWNTMITGYAQCGKISEAKNLFDKMP-KRDPVSWAAMIAG 383


>gi|297809863|ref|XP_002872815.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318652|gb|EFH49074.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 776

 Score =  540 bits (1390), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 259/545 (47%), Positives = 362/545 (66%), Gaps = 8/545 (1%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M V+  V+WN+++ G+A Q G++ +A++LFD+ P  DV ++  M+S  + N   V  A +
Sbjct: 240 MKVRDVVSWNTIITGYA-QNGEIDEARQLFDESPVHDVFTWTAMVSGYIQNRM-VEEARE 297

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
            F R+P ++  SWN M++G+VQ + +  A++LF  MP +N  +W+ MI+GY +CG++ +A
Sbjct: 298 LFDRMPERNEVSWNAMLAGYVQGERVEMAKELFDVMPCRNVSTWNTMITGYAQCGKISEA 357

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLL 180
             LF   P +  V+W AMI+GY + G+     + + L+L  +M   G R N SS SS L 
Sbjct: 358 KNLFDKMPKRDPVSWAAMIAGYSQSGH-----SYEALRLFVLMEREGGRLNRSSFSSALS 412

Query: 181 GCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVT 240
            C+ + +L+LGKQ+H  + K            L+ MYCKCG +E+A  LF E+  KD+V+
Sbjct: 413 TCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVS 472

Query: 241 WNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV 300
           WN MI+GY++HG GE+ALR F+ MK EG+KPD  T VA+L AC+H GLVD G QYF +M 
Sbjct: 473 WNTMIAGYSRHGFGEEALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFHTMT 532

Query: 301 NDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLA 360
            DYG+     HY CMVDLLGRAG L EA +L+K MPF+P  AI+GTLL A RVH   +LA
Sbjct: 533 QDYGVRPNSQHYACMVDLLGRAGLLEEAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELA 592

Query: 361 EFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGT 420
           E AA  +F + P N+ G YV L+N+YA+  +W DV ++R+ M++  V K+PGYSWIE+  
Sbjct: 593 ETAADKIFAMEPENS-GMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQN 651

Query: 421 VVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEK 480
             H F  GD  HPE   I   L++L+ RMK AGYV      LH V EE KE+++ +HSE+
Sbjct: 652 KTHTFSVGDEFHPEKDEIFAFLEDLDLRMKKAGYVSKTSVVLHDVEEEEKERMVRYHSER 711

Query: 481 LAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCS 540
           LA+A+G+++V  G PIRV KNLRVC DCH A KY++ +  R II+RD  RFHHFKDG+CS
Sbjct: 712 LAVAYGIMRVSSGRPIRVIKNLRVCEDCHNAIKYMAKVTGRLIILRDNNRFHHFKDGSCS 771

Query: 541 CGDYW 545
           CGDYW
Sbjct: 772 CGDYW 776



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 105/344 (30%), Positives = 176/344 (51%), Gaps = 29/344 (8%)

Query: 9   WNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK 68
           WN  ++ + +  G+  +A  +F ++P+   VSYN M+S  L N +  +A    F  +P +
Sbjct: 62  WNVAISSYMRT-GRCSEALRVFKRMPRWSSVSYNAMISGYLRNGEFELARM-LFDEMPER 119

Query: 69  DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAP 128
           D  SWN MI G+V+ +N+ KAR+LF  MPE++  SW+ ++SGY + G +D A  +F   P
Sbjct: 120 DLVSWNVMIKGYVRNRNLGKARELFERMPERDVCSWNTILSGYAQNGCVDDARRVFDRMP 179

Query: 129 VKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNAS--SLSSVLLGCSHLS 186
            K+ V+W A++S      YV+NS      KL    +  G R N +  S + +L G     
Sbjct: 180 EKNDVSWNALLS-----AYVQNS------KLEEACVLFGSRENWALVSWNCLLGGFVKKK 228

Query: 187 SLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMIS 246
            +   +Q     F S   +D  +   +I+ Y + G++++A +LF E    DV TW AM+S
Sbjct: 229 KIVEARQ----FFDSMKVRDVVSWNTIITGYAQNGEIDEARQLFDESPVHDVFTWTAMVS 284

Query: 247 GYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIA 306
           GY Q+   E+A  LFD+M +     + +++ A+L        V++  + FD M       
Sbjct: 285 GYIQNRMVEEARELFDRMPER----NEVSWNAMLAGYVQGERVEMAKELFDVMP-----C 335

Query: 307 AKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSA 350
                +  M+    + GK+ EA +L  KMP K  P  +  +++ 
Sbjct: 336 RNVSTWNTMITGYAQCGKISEAKNLFDKMP-KRDPVSWAAMIAG 378


>gi|414885035|tpg|DAA61049.1| TPA: hypothetical protein ZEAMMB73_995105 [Zea mays]
          Length = 824

 Score =  533 bits (1372), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 260/566 (45%), Positives = 371/566 (65%), Gaps = 29/566 (5%)

Query: 6   TVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRL 65
            ++WN+++AG+  QR ++++AQ++F+K+PQ DVVS+N M+S       D+  A   F   
Sbjct: 262 AISWNALMAGYV-QRSQIEEAQKMFNKMPQRDVVSWNTMVSG-YARRGDMAEARRLFDVA 319

Query: 66  PIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFK 125
           PI+D  +W  ++SG+ Q   + +A+ +F AMP+KN+VSW+AM++ Y++   +++A ELF 
Sbjct: 320 PIRDVFTWTAIVSGYAQNGMLEEAKRVFDAMPDKNAVSWNAMMAAYVQRRMMEEAKELFD 379

Query: 126 VAPVKSVVAWTAMISGYMKFGYVEN--------------SWA------------EDGLKL 159
             P ++V +W  M++GY + G ++               SWA            E+ L+L
Sbjct: 380 AMPCRNVASWNTMLTGYAQAGMLDEARAIFGMMPQKDAVSWAAMLAAYSQIGFSEETLQL 439

Query: 160 LRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCK 219
            + M   G   N S+ + VL  C+ +++L+ G Q+H  + K+           L++MY K
Sbjct: 440 FKEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHSRLIKAGYGVGCFVGNALLAMYFK 499

Query: 220 CGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVAL 279
           CG +E+A   F E++ +DVV+WN MI+GYA+HG G++AL +FD M+    KPD IT V +
Sbjct: 500 CGSMEEAHSAFEEMEERDVVSWNTMIAGYARHGFGKEALEVFDTMRKTSTKPDDITLVGV 559

Query: 280 LLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKP 339
           L AC+H+GLV+ GI YF SM  D+G+A KP+HYTCM+DLLGRAG+L EAV+L+K MPF+P
Sbjct: 560 LAACSHSGLVEKGISYFYSMHRDFGVATKPEHYTCMIDLLGRAGRLDEAVNLMKDMPFEP 619

Query: 340 QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIR 399
              ++G LL A R+H+  +L   AA  +F L P NA G YV L+NIYA+  KW DV ++R
Sbjct: 620 DSTMWGALLGASRIHRNSELGRNAAEKIFELEPENA-GMYVLLSNIYASSGKWRDVDKMR 678

Query: 400 LSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLE 459
             M E  V K+PG+SWIEV   VH F  GD VHPE   I+  L++L+ RMK AGYV   +
Sbjct: 679 HIMHERGVKKVPGFSWIEVQNKVHTFSVGDSVHPEREDIYAFLEDLDIRMKKAGYVSATD 738

Query: 460 FALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIE 519
             LH V EE KE +L +HSEKLA+A+G++K+P G PIRV KNLRVC DCH A K ISAIE
Sbjct: 739 MVLHDVEEEEKEHMLKYHSEKLAVAYGILKIPPGRPIRVIKNLRVCRDCHTAFKCISAIE 798

Query: 520 KREIIVRDTTRFHHFKDGTCSCGDYW 545
            R II+RD+ RFHHF+DG+CSCGDYW
Sbjct: 799 GRLIILRDSNRFHHFRDGSCSCGDYW 824



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 87/307 (28%), Positives = 162/307 (52%), Gaps = 16/307 (5%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M VK +V++N +++  A   G +  A+  FD  P+ D VS+N ML+  + N   +  A +
Sbjct: 195 MPVKDSVSYNVMISSHANH-GLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGR-IQEARE 252

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
            F      D  SWN +++G+VQ+  + +A+ +F  MP+++ VSW+ M+SGY   G + +A
Sbjct: 253 LFDSRTEWDAISWNALMAGYVQRSQIEEAQKMFNKMPQRDVVSWNTMVSGYARRGDMAEA 312

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLL 180
             LF VAP++ V  WTA++SGY + G +E +         + +       NA S ++++ 
Sbjct: 313 RRLFDVAPIRDVFTWTAIVSGYAQNGMLEEA---------KRVFDAMPDKNAVSWNAMMA 363

Query: 181 GCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVT 240
                  ++  K+    +F +  C++  +   +++ Y + G L++A  +F  + +KD V+
Sbjct: 364 AYVQRRMMEEAKE----LFDAMPCRNVASWNTMLTGYAQAGMLDEARAIFGMMPQKDAVS 419

Query: 241 WNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV 300
           W AM++ Y+Q G  E+ L+LF +M   G   +   F  +L  C     ++ G+Q    ++
Sbjct: 420 WAAMLAAYSQIGFSEETLQLFKEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHSRLI 479

Query: 301 N-DYGIA 306
              YG+ 
Sbjct: 480 KAGYGVG 486



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 120/476 (25%), Positives = 219/476 (46%), Gaps = 74/476 (15%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSD--DVVAA 58
           M  ++T  +N++LAG+A   G+L  A   F  IP+PD  SYN +L  + ++S   DV A 
Sbjct: 133 MPRRSTSTYNTMLAGYAAN-GRLPQALSFFRSIPRPDSFSYNTLLHALGVSSSLADVRAL 191

Query: 59  FDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLD 118
           FD    +P+KD+ S+N MIS       ++ AR  F   PEK++VSW+ M++ Y+  G++ 
Sbjct: 192 FD---EMPVKDSVSYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRIQ 248

Query: 119 KAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSV 178
           +A ELF        ++W A+++GY++   +E +                           
Sbjct: 249 EARELFDSRTEWDAISWNALMAGYVQRSQIEEA--------------------------- 281

Query: 179 LLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDV 238
                            Q +F     +D  +   ++S Y + GD+ +A +LF     +DV
Sbjct: 282 -----------------QKMFNKMPQRDVVSWNTMVSGYARRGDMAEARRLFDVAPIRDV 324

Query: 239 VTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDS 298
            TW A++SGYAQ+G  E+A R+FD M D+    +++++ A++ A     +++   + FD+
Sbjct: 325 FTWTAIVSGYAQNGMLEEAKRVFDAMPDK----NAVSWNAMMAAYVQRRMMEEAKELFDA 380

Query: 299 MVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLD 358
           M     +A+    +  M+    +AG L EA  +   MP K     +  +L+A   + ++ 
Sbjct: 381 MPC-RNVAS----WNTMLTGYAQAGMLDEARAIFGMMPQK-DAVSWAAMLAA---YSQIG 431

Query: 359 LAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYS---W 415
            +E   + LF        G +V  +     +    D+A +   M+ ++ +   GY    +
Sbjct: 432 FSE-ETLQLF--KEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHSRLIKAGYGVGCF 488

Query: 416 IEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKE 471
           +    +   F+ G      +   H   +E+E+R  ++       +A H  G+E  E
Sbjct: 489 VGNALLAMYFKCGS-----MEEAHSAFEEMEERDVVSWNTMIAGYARHGFGKEALE 539



 Score = 48.1 bits (113), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 61/259 (23%), Positives = 102/259 (39%), Gaps = 80/259 (30%)

Query: 214 ISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDS 273
           I+ + + G + DA +LF  + R+   T+N M++GYA +G+  +AL  F  +     +PDS
Sbjct: 114 ITAHMRAGRVPDAERLFAAMPRRSTSTYNTMLAGYAANGRLPQALSFFRSIP----RPDS 169

Query: 274 ITFVALLLA--------------------------------CNHAGLVDLGIQYFDSMVN 301
            ++  LL A                                 NH GLV L   YFD    
Sbjct: 170 FSYNTLLHALGVSSSLADVRALFDEMPVKDSVSYNVMISSHANH-GLVSLARHYFD---- 224

Query: 302 DYGIAAKPD--HYTCMVDLLGRAGKLVEAVDLI--------------------------- 332
              +A + D   +  M+    R G++ EA +L                            
Sbjct: 225 ---LAPEKDAVSWNGMLAAYVRNGRIQEARELFDSRTEWDAISWNALMAGYVQRSQIEEA 281

Query: 333 KKMPFK-PQPAI--FGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAM 389
           +KM  K PQ  +  + T++S     +R D+AE  A  LF++ P      +  + + YA  
Sbjct: 282 QKMFNKMPQRDVVSWNTMVSG--YARRGDMAE--ARRLFDVAPIRDVFTWTAIVSGYAQN 337

Query: 390 KKWDDVARIRLSMKENNVV 408
              ++  R+  +M + N V
Sbjct: 338 GMLEEAKRVFDAMPDKNAV 356


>gi|449497589|ref|XP_004160443.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  523 bits (1346), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 252/545 (46%), Positives = 360/545 (66%), Gaps = 9/545 (1%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M V+  ++WN ++ G+A Q G L +A+ LF+++P  DV ++  M+S  + N   +  A  
Sbjct: 241 MPVRDKISWNIMITGYA-QNGLLSEARRLFEELPIRDVFAWTAMVSGFVQNGM-LDEATR 298

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
            F+ +P K+  SWN MI+G+VQ + + KAR+LF  MP +N+ SW+ M++GY +CG +D+A
Sbjct: 299 IFEEMPEKNEVSWNAMIAGYVQSQQIEKARELFDQMPSRNTSSWNTMVTGYAQCGNIDQA 358

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLL 180
             LF   P +  ++W AMISGY + G      +E+ L L   M   G   N S+L+  L 
Sbjct: 359 KILFDEMPQRDCISWAAMISGYAQSGQ-----SEEALHLFIKMKRDGGILNRSALACALS 413

Query: 181 GCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVT 240
            C+ +++L+LGKQ+H  + K+       A   L++MY KCG +E+A  +F +I  KD+V+
Sbjct: 414 SCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDIVS 473

Query: 241 WNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV 300
           WN MI+GYA+HG G++AL LF+ MK   +KPD +T V +L AC+H GLVD G++YF+SM 
Sbjct: 474 WNTMIAGYARHGFGKEALALFESMK-MTIKPDDVTLVGVLSACSHTGLVDKGMEYFNSMY 532

Query: 301 NDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLA 360
            +YGI A   HYTCM+DLLGRAG+L EA++L+K MPF P  A +G LL A R+H   +L 
Sbjct: 533 QNYGITANAKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAATWGALLGASRIHGDTELG 592

Query: 361 EFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGT 420
           E AA  +F + P N+ G YV L+N+YAA  +W +V  +R  M++  V K+PGYSW+E+  
Sbjct: 593 EKAAEKVFEMEPDNS-GMYVLLSNLYAASGRWREVREMRSKMRDKGVKKVPGYSWVEIQN 651

Query: 421 VVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEK 480
             H F  GD  HPE   I+  L+EL+  +K  G+V   +  LH V EE KE +L +HSEK
Sbjct: 652 KTHIFTVGDCSHPEAERIYAYLEELDLELKKDGFVSSTKLVLHDVEEEEKEHMLKYHSEK 711

Query: 481 LAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCS 540
           LA+AFG++ +P G PIRV KNLRVC DCH A K+IS I +R+IIVRD+ RFHHF +G+CS
Sbjct: 712 LAVAFGILSIPPGRPIRVIKNLRVCEDCHNAIKHISKITQRQIIVRDSNRFHHFSEGSCS 771

Query: 541 CGDYW 545
           CGDYW
Sbjct: 772 CGDYW 776



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 107/395 (27%), Positives = 190/395 (48%), Gaps = 68/395 (17%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  ++TV +N++++G+     K   A+++F+K+P  D++S+N+MLS  + N + + AA  
Sbjct: 86  MRRRSTVTYNAMISGYLSN-NKFDCARKVFEKMPDRDLISWNVMLSGYVKNGN-LSAARA 143

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECG----- 115
            F ++P KD  SWN M+SGF Q   + +AR +F  M  KN +SW+ ++S Y++ G     
Sbjct: 144 LFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQMLVKNEISWNGLLSAYVQNGRIEDA 203

Query: 116 --------------------------QLDKAVELFKVAPVKSVVAWTAMISGY------- 142
                                     +LD A  LF   PV+  ++W  MI+GY       
Sbjct: 204 RRLFDSKMDWEIVSWNCLMGGYVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLS 263

Query: 143 -------------------MKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCS 183
                              M  G+V+N   ++  ++   M      P  + +S   +   
Sbjct: 264 EARRLFEELPIRDVFAWTAMVSGFVQNGMLDEATRIFEEM------PEKNEVSWNAMIAG 317

Query: 184 HLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNA 243
           ++ S Q+ K   +L  + P  ++T++   +++ Y +CG+++ A  LF E+ ++D ++W A
Sbjct: 318 YVQSQQIEK-ARELFDQMP-SRNTSSWNTMVTGYAQCGNIDQAKILFDEMPQRDCISWAA 375

Query: 244 MISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDY 303
           MISGYAQ G+ E+AL LF KMK +G   +       L +C     ++LG Q    +V   
Sbjct: 376 MISGYAQSGQSEEALHLFIKMKRDGGILNRSALACALSSCAEIAALELGKQLHGRLVK-A 434

Query: 304 GIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 338
           G          ++ + G+ G + EA D+ + +  K
Sbjct: 435 GFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEK 469



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 108/387 (27%), Positives = 191/387 (49%), Gaps = 50/387 (12%)

Query: 7   VNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP 66
           V WN  ++ + + +G+ + A  +F+ + +   V+YN M+S  L N +    A   F+++P
Sbjct: 61  VKWNRKISAYMR-KGQCESALSVFNGMRRRSTVTYNAMISGYLSN-NKFDCARKVFEKMP 118

Query: 67  IKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKV 126
            +D  SWN M+SG+V+  N++ AR LF  MPEK+ VSW+AM+SG+ + G +++A ++F  
Sbjct: 119 DRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQ 178

Query: 127 APVKSVVAWTAMISGYMKFGYVEN--------------SWA------------EDGLKLL 160
             VK+ ++W  ++S Y++ G +E+              SW             +D   L 
Sbjct: 179 MLVKNEISWNGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVRKKRLDDARSLF 238

Query: 161 RMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKC 220
             M      P    +S  ++   +  +  L  +  +L  + P+ +D  A T ++S + + 
Sbjct: 239 DRM------PVRDKISWNIMITGYAQNGLL-SEARRLFEELPI-RDVFAWTAMVSGFVQN 290

Query: 221 GDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 280
           G L++A ++F E+  K+ V+WNAMI+GY Q  + EKA  LFD+M       ++ ++  ++
Sbjct: 291 GMLDEATRIFEEMPEKNEVSWNAMIAGYVQSQQIEKARELFDQMPSR----NTSSWNTMV 346

Query: 281 LACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQ 340
                 G +D     FD M     I+     +  M+    ++G+  EA+ L  KM  K  
Sbjct: 347 TGYAQCGNIDQAKILFDEMPQRDCIS-----WAAMISGYAQSGQSEEALHLFIKM--KRD 399

Query: 341 PAIFGTLLSACRVHKRLDLAEFAAMNL 367
             I      AC +      AE AA+ L
Sbjct: 400 GGILNRSALACALSS---CAEIAALEL 423



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 83/331 (25%), Positives = 154/331 (46%), Gaps = 28/331 (8%)

Query: 69  DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAP 128
           D   WN  IS +++K     A  +F  M  +++V+++AMISGY+   + D A ++F+  P
Sbjct: 59  DIVKWNRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARKVFEKMP 118

Query: 129 VKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSL 188
            + +++W  M+SGY+K G          L   R +       +  S +++L G +    +
Sbjct: 119 DRDLISWNVMLSGYVKNG---------NLSAARALFNQMPEKDVVSWNAMLSGFAQNGFV 169

Query: 189 QLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGY 248
           +  ++    +F   L K+  +   L+S Y + G +EDA +LF      ++V+WN ++ GY
Sbjct: 170 EEARK----IFDQMLVKNEISWNGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGY 225

Query: 249 AQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK 308
            +  + + A  LFD+M       D I++  ++      GL+    + F+ +      A  
Sbjct: 226 VRKKRLDDARSLFDRMPVR----DKISWNIMITGYAQNGLLSEARRLFEELPIRDVFA-- 279

Query: 309 PDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQ---PAIFGTLLSACRVHKRLDLAEFAAM 365
              +T MV    + G L EA  + ++MP K +    A+    + + ++ K  +L  F  M
Sbjct: 280 ---WTAMVSGFVQNGMLDEATRIFEEMPEKNEVSWNAMIAGYVQSQQIEKAREL--FDQM 334

Query: 366 NLFNLNPANA-AGCYVQLANIYAAMKKWDDV 395
              N +  N     Y Q  NI  A   +D++
Sbjct: 335 PSRNTSSWNTMVTGYAQCGNIDQAKILFDEM 365


>gi|449439555|ref|XP_004137551.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  521 bits (1342), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 251/545 (46%), Positives = 359/545 (65%), Gaps = 9/545 (1%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M V+  ++WN ++ G+A Q G L +A+ LF+++P  DV ++  M+S  + N   +  A  
Sbjct: 241 MPVRDKISWNIMITGYA-QNGLLSEARRLFEELPIRDVFAWTAMVSGFVQNGM-LDEATR 298

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
            F+ +P K+  SWN MI+G+VQ + + KAR+LF  MP +N+ SW+ M++GY +CG +D+A
Sbjct: 299 IFEEMPEKNEVSWNAMIAGYVQSQQIEKARELFDQMPSRNTSSWNTMVTGYAQCGNIDQA 358

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLL 180
             LF   P +  ++W AMISGY + G      +E+ L L   M   G   N S+L+  L 
Sbjct: 359 KILFDEMPQRDCISWAAMISGYAQSGQ-----SEEALHLFIKMKRDGGILNRSALACALS 413

Query: 181 GCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVT 240
            C+ +++L+LGKQ+H  + K+       A   L++MY KCG +E+A  +F +I  KD+V+
Sbjct: 414 SCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDIVS 473

Query: 241 WNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV 300
           WN MI+GYA+HG G++AL LF+ MK   +KPD +T V +L AC+H G VD G++YF+SM 
Sbjct: 474 WNTMIAGYARHGFGKEALALFESMK-MTIKPDDVTLVGVLSACSHTGFVDKGMEYFNSMY 532

Query: 301 NDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLA 360
            +YGI A   HYTCM+DLLGRAG+L EA++L+K MPF P  A +G LL A R+H   +L 
Sbjct: 533 QNYGITANAKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAATWGALLGASRIHGDTELG 592

Query: 361 EFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGT 420
           E AA  +F + P N+ G YV L+N+YAA  +W +V  +R  M++  V K+PGYSW+E+  
Sbjct: 593 EKAAEKVFEMEPDNS-GMYVLLSNLYAASGRWREVREMRSKMRDKGVKKVPGYSWVEIQN 651

Query: 421 VVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEK 480
             H F  GD  HPE   I+  L+EL+  +K  G+V   +  LH V EE KE +L +HSEK
Sbjct: 652 KTHIFTVGDCSHPEAERIYAYLEELDLELKKDGFVSSTKLVLHDVEEEEKEHMLKYHSEK 711

Query: 481 LAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCS 540
           LA+AFG++ +P G PIRV KNLRVC DCH A K+IS I +R+IIVRD+ RFHHF +G+CS
Sbjct: 712 LAVAFGILSIPPGRPIRVIKNLRVCEDCHNAIKHISKITQRQIIVRDSNRFHHFSEGSCS 771

Query: 541 CGDYW 545
           CGDYW
Sbjct: 772 CGDYW 776



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 107/395 (27%), Positives = 190/395 (48%), Gaps = 68/395 (17%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  ++TV +N++++G+     K   A+++F+K+P  D++S+N+MLS  + N + + AA  
Sbjct: 86  MRRRSTVTYNAMISGYLSN-NKFDCARKVFEKMPDRDLISWNVMLSGYVKNGN-LSAARA 143

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECG----- 115
            F ++P KD  SWN M+SGF Q   + +AR +F  M  KN +SW+ ++S Y++ G     
Sbjct: 144 LFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQMLVKNEISWNGLLSAYVQNGRIEDA 203

Query: 116 --------------------------QLDKAVELFKVAPVKSVVAWTAMISGY------- 142
                                     +LD A  LF   PV+  ++W  MI+GY       
Sbjct: 204 RRLFDSKMDWEIVSWNCLMGGYVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLS 263

Query: 143 -------------------MKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCS 183
                              M  G+V+N   ++  ++   M      P  + +S   +   
Sbjct: 264 EARRLFEELPIRDVFAWTAMVSGFVQNGMLDEATRIFEEM------PEKNEVSWNAMIAG 317

Query: 184 HLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNA 243
           ++ S Q+ K   +L  + P  ++T++   +++ Y +CG+++ A  LF E+ ++D ++W A
Sbjct: 318 YVQSQQIEK-ARELFDQMP-SRNTSSWNTMVTGYAQCGNIDQAKILFDEMPQRDCISWAA 375

Query: 244 MISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDY 303
           MISGYAQ G+ E+AL LF KMK +G   +       L +C     ++LG Q    +V   
Sbjct: 376 MISGYAQSGQSEEALHLFIKMKRDGGILNRSALACALSSCAEIAALELGKQLHGRLVK-A 434

Query: 304 GIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 338
           G          ++ + G+ G + EA D+ + +  K
Sbjct: 435 GFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEK 469



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 108/387 (27%), Positives = 191/387 (49%), Gaps = 50/387 (12%)

Query: 7   VNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP 66
           V WN  ++ + + +G+ + A  +F+ + +   V+YN M+S  L N +    A   F+++P
Sbjct: 61  VKWNRKISAYMR-KGQCESALSVFNGMRRRSTVTYNAMISGYLSN-NKFDCARKVFEKMP 118

Query: 67  IKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKV 126
            +D  SWN M+SG+V+  N++ AR LF  MPEK+ VSW+AM+SG+ + G +++A ++F  
Sbjct: 119 DRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQ 178

Query: 127 APVKSVVAWTAMISGYMKFGYVEN--------------SWA------------EDGLKLL 160
             VK+ ++W  ++S Y++ G +E+              SW             +D   L 
Sbjct: 179 MLVKNEISWNGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVRKKRLDDARSLF 238

Query: 161 RMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKC 220
             M      P    +S  ++   +  +  L  +  +L  + P+ +D  A T ++S + + 
Sbjct: 239 DRM------PVRDKISWNIMITGYAQNGLL-SEARRLFEELPI-RDVFAWTAMVSGFVQN 290

Query: 221 GDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 280
           G L++A ++F E+  K+ V+WNAMI+GY Q  + EKA  LFD+M       ++ ++  ++
Sbjct: 291 GMLDEATRIFEEMPEKNEVSWNAMIAGYVQSQQIEKARELFDQMPSR----NTSSWNTMV 346

Query: 281 LACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQ 340
                 G +D     FD M     I+     +  M+    ++G+  EA+ L  KM  K  
Sbjct: 347 TGYAQCGNIDQAKILFDEMPQRDCIS-----WAAMISGYAQSGQSEEALHLFIKM--KRD 399

Query: 341 PAIFGTLLSACRVHKRLDLAEFAAMNL 367
             I      AC +      AE AA+ L
Sbjct: 400 GGILNRSALACALSS---CAEIAALEL 423



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 83/331 (25%), Positives = 154/331 (46%), Gaps = 28/331 (8%)

Query: 69  DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAP 128
           D   WN  IS +++K     A  +F  M  +++V+++AMISGY+   + D A ++F+  P
Sbjct: 59  DIVKWNRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARKVFEKMP 118

Query: 129 VKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSL 188
            + +++W  M+SGY+K G          L   R +       +  S +++L G +    +
Sbjct: 119 DRDLISWNVMLSGYVKNG---------NLSAARALFNQMPEKDVVSWNAMLSGFAQNGFV 169

Query: 189 QLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGY 248
           +  ++    +F   L K+  +   L+S Y + G +EDA +LF      ++V+WN ++ GY
Sbjct: 170 EEARK----IFDQMLVKNEISWNGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGY 225

Query: 249 AQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK 308
            +  + + A  LFD+M       D I++  ++      GL+    + F+ +      A  
Sbjct: 226 VRKKRLDDARSLFDRMPVR----DKISWNIMITGYAQNGLLSEARRLFEELPIRDVFA-- 279

Query: 309 PDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQ---PAIFGTLLSACRVHKRLDLAEFAAM 365
              +T MV    + G L EA  + ++MP K +    A+    + + ++ K  +L  F  M
Sbjct: 280 ---WTAMVSGFVQNGMLDEATRIFEEMPEKNEVSWNAMIAGYVQSQQIEKAREL--FDQM 334

Query: 366 NLFNLNPANA-AGCYVQLANIYAAMKKWDDV 395
              N +  N     Y Q  NI  A   +D++
Sbjct: 335 PSRNTSSWNTMVTGYAQCGNIDQAKILFDEM 365


>gi|449453226|ref|XP_004144359.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Cucumis sativus]
          Length = 785

 Score =  518 bits (1334), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 272/572 (47%), Positives = 356/572 (62%), Gaps = 30/572 (5%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  K  V+W  +L G   Q G++ +A  LFD +P+ DVV+   M+         +V A  
Sbjct: 217 MPEKNVVSWTVMLGGLL-QEGRIDEACRLFDMMPEKDVVTRTNMIGG-YCQVGRLVEARM 274

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
            F  +P ++  SW TMI+G+VQ + +  AR LF  MPEKN VSW+AM+ GY  CG+LD+A
Sbjct: 275 LFDEMPRRNVVSWTTMITGYVQNQQVDIARKLFEVMPEKNEVSWTAMLKGYTNCGRLDEA 334

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGYV--------------ENSWAE------------ 154
            ELF   P+KSVVA  AMI  + + G V              E +W+             
Sbjct: 335 SELFNAMPIKSVVACNAMILCFGQNGEVPKARQVFDQMREKDEGTWSAMIKVYERKGLEL 394

Query: 155 DGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLI 214
           D L+L RMM   GIRPN  SL SVL  C+ L++L  G+++H  + +S    D    + L+
Sbjct: 395 DALELFRMMQREGIRPNFPSLISVLSVCAGLANLDHGREIHAQLVRSQFDLDVYVASVLL 454

Query: 215 SMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSI 274
           SMY KCG+L  A ++F     KDVV WN++I+GYAQHG G +ALR+F  M   G+ PD +
Sbjct: 455 SMYIKCGNLAKAKQVFDRFAVKDVVMWNSIITGYAQHGLGVEALRVFHDMHFSGIMPDDV 514

Query: 275 TFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKK 334
           TFV +L AC++ G V  G++ F+SM   Y +  K +HY CMVDLLGRAGKL EA+DLI+K
Sbjct: 515 TFVGVLSACSYTGNVKKGLEIFNSMETKYQVEQKIEHYACMVDLLGRAGKLNEAMDLIEK 574

Query: 335 MPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDD 394
           MP +    I+G LL ACR H +LDLAE AA  L  L P N AG ++ L+NIYA+  +WDD
Sbjct: 575 MPMEADAIIWGALLGACRTHMKLDLAEVAAKKLLVLEPKN-AGPFILLSNIYASQGRWDD 633

Query: 395 VARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRV-HPELVSIHEKLKELEKRMKLAG 453
           VA +R +M++  V K PG SWI V   VH+F  GD   HPE   I+  L+ L   ++ AG
Sbjct: 634 VAELRRNMRDRRVSKYPGCSWIVVEKKVHKFTGGDSSGHPEHSEINRILEWLSGLLREAG 693

Query: 454 YVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATK 513
           Y PD  F LH V EE K Q L +HSEKLA+A+GL+K+P+G PIRV KNLRVCGDCH A K
Sbjct: 694 YYPDQSFVLHDVDEEEKVQSLEYHSEKLAVAYGLLKIPIGMPIRVMKNLRVCGDCHAAIK 753

Query: 514 YISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
            I+ +  REII+RD  RFHHFKDG+CSC DYW
Sbjct: 754 LIAKVTGREIILRDANRFHHFKDGSCSCRDYW 785



 Score =  155 bits (392), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 90/299 (30%), Positives = 167/299 (55%), Gaps = 19/299 (6%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  K  ++WNS++AG+  Q  + ++AQ +FDK+ + + +S+N ++S   +N+  +  A +
Sbjct: 124 MRDKNIISWNSIVAGYF-QNKRPQEAQNMFDKMSERNTISWNGLVSG-YINNGMINEARE 181

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
            F R+P ++  SW  M+ G+V++  +++A  LF  MPEKN VSW+ M+ G ++ G++D+A
Sbjct: 182 VFDRMPERNVVSWTAMVRGYVKEGMISEAETLFWQMPEKNVVSWTVMLGGLLQEGRIDEA 241

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLL 180
             LF + P K VV  T MI GY + G +  +         RM+     R N  S ++++ 
Sbjct: 242 CRLFDMMPEKDVVTRTNMIGGYCQVGRLVEA---------RMLFDEMPRRNVVSWTTMIT 292

Query: 181 GCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVT 240
           G      + + +++ +++ +    K+  + T ++  Y  CG L++A +LF  +  K VV 
Sbjct: 293 GYVQNQQVDIARKLFEVMPE----KNEVSWTAMLKGYTNCGRLDEASELFNAMPIKSVVA 348

Query: 241 WNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSM 299
            NAMI  + Q+G+  KA ++FD+M+++    D  T+ A++      GL    ++ F  M
Sbjct: 349 CNAMILCFGQNGEVPKARQVFDQMREK----DEGTWSAMIKVYERKGLELDALELFRMM 403



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 95/364 (26%), Positives = 185/364 (50%), Gaps = 60/364 (16%)

Query: 7   VNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP 66
           ++ NS++  +++  G+++ A+ +FD++   +++S+N +++    N     A  + F ++ 
Sbjct: 99  ISRNSLITRYSRL-GQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQ-NMFDKMS 156

Query: 67  IKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKV 126
            ++T SWN ++SG++    + +AR++F  MPE+N VSW+AM+ GY++ G + +A  LF  
Sbjct: 157 ERNTISWNGLVSGYINNGMINEAREVFDRMPERNVVSWTAMVRGYVKEGMISEAETLFWQ 216

Query: 127 APVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLS 186
            P K+VV+WT M+ G ++ G +     ++  +L  MM      P                
Sbjct: 217 MPEKNVVSWTVMLGGLLQEGRI-----DEACRLFDMM------PE--------------- 250

Query: 187 SLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMIS 246
                             KD    T +I  YC+ G L +A  LF E+ R++VV+W  MI+
Sbjct: 251 ------------------KDVVTRTNMIGGYCQVGRLVEARMLFDEMPRRNVVSWTTMIT 292

Query: 247 GYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIA 306
           GY Q+ + + A +LF+ M ++    + +++ A+L    + G +D   + F++M     +A
Sbjct: 293 GYVQNQQVDIARKLFEVMPEK----NEVSWTAMLKGYTNCGRLDEASELFNAMPIKSVVA 348

Query: 307 AKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMN 366
                   M+   G+ G++ +A  +  +M  K +    GT  +  +V++R  L E  A+ 
Sbjct: 349 C-----NAMILCFGQNGEVPKARQVFDQMREKDE----GTWSAMIKVYERKGL-ELDALE 398

Query: 367 LFNL 370
           LF +
Sbjct: 399 LFRM 402


>gi|449488311|ref|XP_004157997.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Cucumis sativus]
          Length = 785

 Score =  518 bits (1334), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 272/572 (47%), Positives = 356/572 (62%), Gaps = 30/572 (5%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  K  V+W  +L G   Q G++ +A  LFD +P+ DVV+   M+         +V A  
Sbjct: 217 MPEKNVVSWTVMLGGLL-QEGRIDEACRLFDMMPEKDVVTRTNMIGG-YCQVGRLVEARM 274

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
            F  +P ++  SW TMI+G+VQ + +  AR LF  MPEKN VSW+AM+ GY  CG+LD+A
Sbjct: 275 LFDEMPRRNVVSWTTMITGYVQNQQVDIARKLFEVMPEKNEVSWTAMLKGYTNCGRLDEA 334

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGYV--------------ENSWAE------------ 154
            ELF   P+KSVVA  AMI  + + G V              E +W+             
Sbjct: 335 SELFNAMPIKSVVACNAMILCFGQNGEVPKARQVFDQMREKDEGTWSAMIKVYERKGLEL 394

Query: 155 DGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLI 214
           D L+L RMM   GIRPN  SL SVL  C+ L++L  G+++H  + +S    D    + L+
Sbjct: 395 DALELFRMMQREGIRPNFPSLISVLSVCAGLANLDHGREIHAQLVRSQFDLDVYVASVLL 454

Query: 215 SMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSI 274
           SMY KCG+L  A ++F     KDVV WN++I+GYAQHG G +ALR+F  M   G+ PD +
Sbjct: 455 SMYIKCGNLAKAKQVFDRFAVKDVVMWNSIITGYAQHGLGVEALRVFHDMHFSGIMPDDV 514

Query: 275 TFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKK 334
           TFV +L AC++ G V  G++ F+SM   Y +  K +HY CMVDLLGRAGKL EA+DLI+K
Sbjct: 515 TFVGVLSACSYTGNVKKGLEIFNSMETKYQVEQKIEHYACMVDLLGRAGKLNEAMDLIEK 574

Query: 335 MPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDD 394
           MP +    I+G LL ACR H +LDLAE AA  L  L P N AG ++ L+NIYA+  +WDD
Sbjct: 575 MPMEADAIIWGALLGACRTHMKLDLAEVAAKKLLVLEPKN-AGPFILLSNIYASQGRWDD 633

Query: 395 VARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRV-HPELVSIHEKLKELEKRMKLAG 453
           VA +R +M++  V K PG SWI V   VH+F  GD   HPE   I+  L+ L   ++ AG
Sbjct: 634 VAELRRNMRDRRVSKYPGCSWIVVEKKVHKFTGGDSSGHPEHSEINRILEWLSGLLREAG 693

Query: 454 YVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATK 513
           Y PD  F LH V EE K Q L +HSEKLA+A+GL+K+P+G PIRV KNLRVCGDCH A K
Sbjct: 694 YYPDQSFVLHDVDEEEKVQSLEYHSEKLAVAYGLLKIPIGMPIRVMKNLRVCGDCHAAIK 753

Query: 514 YISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
            I+ +  REII+RD  RFHHFKDG+CSC DYW
Sbjct: 754 LIAKVTGREIILRDANRFHHFKDGSCSCRDYW 785



 Score =  155 bits (391), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 90/299 (30%), Positives = 167/299 (55%), Gaps = 19/299 (6%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  K  ++WNS++AG+  Q  + ++AQ +FDK+ + + +S+N ++S   +N+  +  A +
Sbjct: 124 MRDKNIISWNSIVAGYF-QNKRPQEAQNMFDKMSERNTISWNGLVSG-YINNGMINEARE 181

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
            F R+P ++  SW  M+ G+V++  +++A  LF  MPEKN VSW+ M+ G ++ G++D+A
Sbjct: 182 VFDRMPERNVVSWTAMVRGYVKEGMISEAETLFWQMPEKNVVSWTVMLGGLLQEGRIDEA 241

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLL 180
             LF + P K VV  T MI GY + G +  +         RM+     R N  S ++++ 
Sbjct: 242 CRLFDMMPEKDVVTRTNMIGGYCQVGRLVEA---------RMLFDEMPRRNVVSWTTMIT 292

Query: 181 GCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVT 240
           G      + + +++ +++ +    K+  + T ++  Y  CG L++A +LF  +  K VV 
Sbjct: 293 GYVQNQQVDIARKLFEVMPE----KNEVSWTAMLKGYTNCGRLDEASELFNAMPIKSVVA 348

Query: 241 WNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSM 299
            NAMI  + Q+G+  KA ++FD+M+++    D  T+ A++      GL    ++ F  M
Sbjct: 349 CNAMILCFGQNGEVPKARQVFDQMREK----DEGTWSAMIKVYERKGLELDALELFRMM 403



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 95/364 (26%), Positives = 185/364 (50%), Gaps = 60/364 (16%)

Query: 7   VNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP 66
           ++ NS++  +++  G+++ A+ +FD++   +++S+N +++    N     A  + F ++ 
Sbjct: 99  ISRNSLITRYSRL-GQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQ-NMFDKMS 156

Query: 67  IKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKV 126
            ++T SWN ++SG++    + +AR++F  MPE+N VSW+AM+ GY++ G + +A  LF  
Sbjct: 157 ERNTISWNGLVSGYINNGMINEAREVFDRMPERNVVSWTAMVRGYVKEGMISEAETLFWQ 216

Query: 127 APVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLS 186
            P K+VV+WT M+ G ++ G +     ++  +L  MM      P                
Sbjct: 217 MPEKNVVSWTVMLGGLLQEGRI-----DEACRLFDMM------PE--------------- 250

Query: 187 SLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMIS 246
                             KD    T +I  YC+ G L +A  LF E+ R++VV+W  MI+
Sbjct: 251 ------------------KDVVTRTNMIGGYCQVGRLVEARMLFDEMPRRNVVSWTTMIT 292

Query: 247 GYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIA 306
           GY Q+ + + A +LF+ M ++    + +++ A+L    + G +D   + F++M     +A
Sbjct: 293 GYVQNQQVDIARKLFEVMPEK----NEVSWTAMLKGYTNCGRLDEASELFNAMPIKSVVA 348

Query: 307 AKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMN 366
                   M+   G+ G++ +A  +  +M  K +    GT  +  +V++R  L E  A+ 
Sbjct: 349 C-----NAMILCFGQNGEVPKARQVFDQMREKDE----GTWSAMIKVYERKGL-ELDALE 398

Query: 367 LFNL 370
           LF +
Sbjct: 399 LFRM 402


>gi|356511263|ref|XP_003524346.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 763

 Score =  504 bits (1297), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 251/545 (46%), Positives = 350/545 (64%), Gaps = 8/545 (1%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M V+  ++WN++++G+A Q G L  A+ LF++ P  DV ++  M+S  + N   V  A  
Sbjct: 227 MPVRDVISWNTMISGYA-QVGDLSQAKRLFNESPIRDVFTWTAMVSGYVQNGM-VDEARK 284

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
           +F  +P+K+  S+N M++G+VQ K M  A +LF AMP +N  SW+ MI+GY + G + +A
Sbjct: 285 YFDEMPVKNEISYNAMLAGYVQYKKMVIAGELFEAMPCRNISSWNTMITGYGQNGGIAQA 344

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLL 180
            +LF + P +  V+W A+ISGY + G+ E     + L +   M   G   N S+ S  L 
Sbjct: 345 RKLFDMMPQRDCVSWAAIISGYAQNGHYE-----EALNMFVEMKRDGESSNRSTFSCALS 399

Query: 181 GCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVT 240
            C+ +++L+LGKQVH  V K+           L+ MY KCG  ++A  +F  I+ KDVV+
Sbjct: 400 TCADIAALELGKQVHGQVVKAGFETGCFVGNALLGMYFKCGSTDEANDVFEGIEEKDVVS 459

Query: 241 WNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV 300
           WN MI+GYA+HG G +AL LF+ MK  G+KPD IT V +L AC+H+GL+D G +YF SM 
Sbjct: 460 WNTMIAGYARHGFGRQALVLFESMKKAGVKPDEITMVGVLSACSHSGLIDRGTEYFYSMD 519

Query: 301 NDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLA 360
            DY +     HYTCM+DLLGRAG+L EA +L++ MPF P  A +G LL A R+H   +L 
Sbjct: 520 RDYNVKPTSKHYTCMIDLLGRAGRLEEAENLMRNMPFDPGAASWGALLGASRIHGNTELG 579

Query: 361 EFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGT 420
           E AA  +F + P N+ G YV L+N+YAA  +W DV ++R  M+E  V K+ GYSW+EV  
Sbjct: 580 EKAAEMVFKMEPQNS-GMYVLLSNLYAASGRWVDVGKMRSKMREAGVQKVTGYSWVEVQN 638

Query: 421 VVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEK 480
            +H F  GD  HPE   I+  L+EL+ +M+  GYV   +  LH V EE KE +L +HSEK
Sbjct: 639 KIHTFSVGDCFHPEKDRIYAFLEELDLKMRREGYVSSTKLVLHDVEEEEKEHMLKYHSEK 698

Query: 481 LAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCS 540
           LA+AFG++ +P G PIRV KNLRVC DCH A K+IS I  R II+RD+ RFHHF +G CS
Sbjct: 699 LAVAFGILTIPAGRPIRVMKNLRVCQDCHNAIKHISKIVGRLIILRDSHRFHHFSEGICS 758

Query: 541 CGDYW 545
           CGDYW
Sbjct: 759 CGDYW 763



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 99/357 (27%), Positives = 174/357 (48%), Gaps = 67/357 (18%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  +++V++N++++G+ +   K   A++LFDK+P+ D+ S+N+ML+  + N   +  A  
Sbjct: 72  MPRRSSVSYNAMISGYLRN-AKFSLARDLFDKMPERDLFSWNVMLTGYVRNR-RLGEAHK 129

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
            F  +P KD  SWN M+SG+ Q   + +AR++F  MP +NS+SW+ +++ Y+  G+L +A
Sbjct: 130 LFDLMPKKDVVSWNAMLSGYAQNGFVDEAREVFNKMPHRNSISWNGLLAAYVHNGRLKEA 189

Query: 121 VELFKVA-------------------------------PVKSVVAWTAMISGY------- 142
             LF+                                 PV+ V++W  MISGY       
Sbjct: 190 RRLFESQSNWELISWNCLMGGYVKRNMLGDARQLFDRMPVRDVISWNTMISGYAQVGDLS 249

Query: 143 -------------------MKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCS 183
                              M  GYV+N   ++  K    M       N  S +++L G  
Sbjct: 250 QAKRLFNESPIRDVFTWTAMVSGYVQNGMVDEARKYFDEM----PVKNEISYNAMLAGYV 305

Query: 184 HLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNA 243
               + +  +    +F++  C++ ++   +I+ Y + G +  A KLF  + ++D V+W A
Sbjct: 306 QYKKMVIAGE----LFEAMPCRNISSWNTMITGYGQNGGIAQARKLFDMMPQRDCVSWAA 361

Query: 244 MISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV 300
           +ISGYAQ+G  E+AL +F +MK +G   +  TF   L  C     ++LG Q    +V
Sbjct: 362 IISGYAQNGHYEEALNMFVEMKRDGESSNRSTFSCALSTCADIAALELGKQVHGQVV 418



 Score =  151 bits (382), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 102/334 (30%), Positives = 170/334 (50%), Gaps = 32/334 (9%)

Query: 7   VNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP 66
           V WN  ++   +  G    A  +F+ +P+   VSYN M+S  L N+   +A  D F ++P
Sbjct: 47  VTWNKAISSHMRN-GHCDSALRVFNSMPRRSSVSYNAMISGYLRNAKFSLAR-DLFDKMP 104

Query: 67  IKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKV 126
            +D  SWN M++G+V+ + + +A  LF  MP+K+ VSW+AM+SGY + G +D+A E+F  
Sbjct: 105 ERDLFSWNVMLTGYVRNRRLGEAHKLFDLMPKKDVVSWNAMLSGYAQNGFVDEAREVFNK 164

Query: 127 APVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLS 186
            P ++ ++W  +++      YV N   ++  +L         + N   +S   L   ++ 
Sbjct: 165 MPHRNSISWNGLLA-----AYVHNGRLKEARRLFES------QSNWELISWNCLMGGYVK 213

Query: 187 SLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMIS 246
              LG    QL  + P+ +D  +   +IS Y + GDL  A +LF E   +DV TW AM+S
Sbjct: 214 RNMLG-DARQLFDRMPV-RDVISWNTMISGYAQVGDLSQAKRLFNESPIRDVFTWTAMVS 271

Query: 247 GYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIA 306
           GY Q+G  ++A + FD+M  +    + I++ A+L     AG V    QY   ++      
Sbjct: 272 GYVQNGMVDEARKYFDEMPVK----NEISYNAML-----AGYV----QYKKMVIAGELFE 318

Query: 307 AKP----DHYTCMVDLLGRAGKLVEAVDLIKKMP 336
           A P      +  M+   G+ G + +A  L   MP
Sbjct: 319 AMPCRNISSWNTMITGYGQNGGIAQARKLFDMMP 352



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 107/374 (28%), Positives = 187/374 (50%), Gaps = 28/374 (7%)

Query: 32  KIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARD 91
           K   PD+V++N  +S  + N     +A   F  +P + + S+N MISG+++    + ARD
Sbjct: 40  KFKDPDIVTWNKAISSHMRNGH-CDSALRVFNSMPRRSSVSYNAMISGYLRNAKFSLARD 98

Query: 92  LFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENS 151
           LF  MPE++  SW+ M++GY+   +L +A +LF + P K VV+W AM+SGY + G+V+ +
Sbjct: 99  LFDKMPERDLFSWNVMLTGYVRNRRLGEAHKLFDLMPKKDVVSWNAMLSGYAQNGFVDEA 158

Query: 152 WAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALT 211
                    R +       N+ S + +L    H   L+  ++    +F+S    +  +  
Sbjct: 159 ---------REVFNKMPHRNSISWNGLLAAYVHNGRLKEARR----LFESQSNWELISWN 205

Query: 212 PLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKP 271
            L+  Y K   L DA +LF  +  +DV++WN MISGYAQ G   +A RLF    +E    
Sbjct: 206 CLMGGYVKRNMLGDARQLFDRMPVRDVISWNTMISGYAQVGDLSQAKRLF----NESPIR 261

Query: 272 DSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDL 331
           D  T+ A++      G+VD   +YFD M     I+     Y  M+    +  K+V A +L
Sbjct: 262 DVFTWTAMVSGYVQNGMVDEARKYFDEMPVKNEIS-----YNAMLAGYVQYKKMVIAGEL 316

Query: 332 IKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKK 391
            + MP +   + + T+++     +   +A+  A  LF++ P      +  + + YA    
Sbjct: 317 FEAMPCR-NISSWNTMITG--YGQNGGIAQ--ARKLFDMMPQRDCVSWAAIISGYAQNGH 371

Query: 392 WDDVARIRLSMKEN 405
           +++   + + MK +
Sbjct: 372 YEEALNMFVEMKRD 385


>gi|92870988|gb|ABE80149.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 766

 Score =  498 bits (1282), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 246/545 (45%), Positives = 348/545 (63%), Gaps = 8/545 (1%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M V+  ++WN++++G+A Q G L  A+ LFD+ P  DV ++  M+S  + N   +  A  
Sbjct: 230 MPVRDAISWNTMISGYA-QGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGM-LDEAKT 287

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
           FF  +P K+  S+N MI+G+VQ K M  AR+LF +MP +N  SW+ MI+GY + G + +A
Sbjct: 288 FFDEMPEKNEVSYNAMIAGYVQTKKMDIARELFESMPCRNISSWNTMITGYGQIGDIAQA 347

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLL 180
            + F + P +  V+W A+I+GY + G+ E     + L +   +   G   N ++    L 
Sbjct: 348 RKFFDMMPQRDCVSWAAIIAGYAQSGHYE-----EALNMFVEIKQDGESLNRATFGCALS 402

Query: 181 GCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVT 240
            C+ +++L+LGKQ+H    K            L++MY KCG +++A   F  I+ KDVV+
Sbjct: 403 TCADIAALELGKQIHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDVVS 462

Query: 241 WNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV 300
           WN M++GYA+HG G +AL +F+ MK  G+KPD IT V +L AC+H GL+D G +YF SM 
Sbjct: 463 WNTMLAGYARHGFGRQALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSMT 522

Query: 301 NDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLA 360
            DYG+     HYTCM+DLLGRAG+L EA DLI+ MPF+P  A +G LL A R+H   +L 
Sbjct: 523 KDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGAASWGALLGASRIHGNTELG 582

Query: 361 EFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGT 420
           E AA  +F + P N+ G YV L+N+YAA  +W D  ++R  M++  V K+PGYSW+EV  
Sbjct: 583 EKAAEMVFKMEPQNS-GMYVLLSNLYAASGRWVDADKMRSKMRDIGVQKVPGYSWVEVQN 641

Query: 421 VVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEK 480
            +H F  GD  HPE   I+  L+EL+ +M+  GYV   +  LH V EE KE +L +HSEK
Sbjct: 642 KIHTFSVGDCSHPEKERIYAYLEELDLKMREEGYVSLTKLVLHDVEEEEKEHMLKYHSEK 701

Query: 481 LAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCS 540
           LA+AFG++ +P G PIRV KNLRVC DCH A K+IS I  R II+RD+ RFHHF +G CS
Sbjct: 702 LAVAFGILTIPGGRPIRVMKNLRVCEDCHSAIKHISKIVGRLIILRDSHRFHHFNEGFCS 761

Query: 541 CGDYW 545
           CGDYW
Sbjct: 762 CGDYW 766



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 109/432 (25%), Positives = 202/432 (46%), Gaps = 73/432 (16%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  +++V++N++++G+ +   K   A+ LFD++P+ D+ S+N+ML+  + N   +  A  
Sbjct: 75  MPRRSSVSYNAMISGYLRN-SKFNLARNLFDQMPERDLFSWNVMLTGYVRNCR-LGDARR 132

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
            F  +P KD  SWN+++SG+ Q   + +AR++F  MPEKNS+SW+ +++ Y+  G++++A
Sbjct: 133 LFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNMPEKNSISWNGLLAAYVHNGRIEEA 192

Query: 121 VELFKVA-------------------------------PVKSVVAWTAMISGY------- 142
             LF+                                 PV+  ++W  MISGY       
Sbjct: 193 CLLFESKSDWDLISWNCLMGGFVRKKKLGDARWLFDKMPVRDAISWNTMISGYAQGGGLS 252

Query: 143 -------------------MKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCS 183
                              M  GYV+N   ++       M       N  S ++++ G  
Sbjct: 253 QARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEM----PEKNEVSYNAMIAGYV 308

Query: 184 HLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNA 243
               + + ++    +F+S  C++ ++   +I+ Y + GD+  A K F  + ++D V+W A
Sbjct: 309 QTKKMDIARE----LFESMPCRNISSWNTMITGYGQIGDIAQARKFFDMMPQRDCVSWAA 364

Query: 244 MISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN-D 302
           +I+GYAQ G  E+AL +F ++K +G   +  TF   L  C     ++LG Q     V   
Sbjct: 365 IIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALSTCADIAALELGKQIHGQAVKMG 424

Query: 303 YGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVH--KRLDLA 360
           YG      +   ++ +  + G + EA D  + +  K   + + T+L+    H   R  L 
Sbjct: 425 YGTGCFVGN--ALLAMYFKCGSIDEANDTFEGIEEKDVVS-WNTMLAGYARHGFGRQALT 481

Query: 361 EFAAMNLFNLNP 372
            F +M    + P
Sbjct: 482 VFESMKTAGVKP 493



 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 91/330 (27%), Positives = 164/330 (49%), Gaps = 24/330 (7%)

Query: 7   VNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP 66
           + WN  ++   +  G    A  +F+ +P+   VSYN M+S  L NS   +A  + F ++P
Sbjct: 50  LKWNKAISTHMRN-GHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLAR-NLFDQMP 107

Query: 67  IKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKV 126
            +D  SWN M++G+V+   +  AR LF  MPEK+ VSW++++SGY + G +D+A E+F  
Sbjct: 108 ERDLFSWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDN 167

Query: 127 APVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLS 186
            P K+ ++W  +++ Y+  G +E +            +    + +   +S   L    + 
Sbjct: 168 MPEKNSISWNGLLAAYVHNGRIEEA-----------CLLFESKSDWDLISWNCLMGGFVR 216

Query: 187 SLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMIS 246
             +LG    + +F     +D  +   +IS Y + G L  A +LF E   +DV TW AM+S
Sbjct: 217 KKKLGDA--RWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDESPTRDVFTWTAMVS 274

Query: 247 GYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIA 306
           GY Q+G  ++A   FD+M ++    + +++ A++        +D+  + F+SM       
Sbjct: 275 GYVQNGMLDEAKTFFDEMPEK----NEVSYNAMIAGYVQTKKMDIARELFESMP-----C 325

Query: 307 AKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 336
                +  M+   G+ G + +A      MP
Sbjct: 326 RNISSWNTMITGYGQIGDIAQARKFFDMMP 355



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 88/334 (26%), Positives = 154/334 (46%), Gaps = 28/334 (8%)

Query: 64  RLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVEL 123
           R+   D   WN  IS  ++  +   A  +F  MP ++SVS++AMISGY+   + + A  L
Sbjct: 43  RVKDPDILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNL 102

Query: 124 FKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCS 183
           F   P + + +W  M++     GYV N    D  +L  +M       +  S +S+L G +
Sbjct: 103 FDQMPERDLFSWNVMLT-----GYVRNCRLGDARRLFDLM----PEKDVVSWNSLLSGYA 153

Query: 184 HLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNA 243
               +   ++    VF +   K++ +   L++ Y   G +E+AC LF      D+++WN 
Sbjct: 154 QNGYVDEARE----VFDNMPEKNSISWNGLLAAYVHNGRIEEACLLFESKSDWDLISWNC 209

Query: 244 MISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFD-SMVND 302
           ++ G+ +  K   A  LFDKM       D+I++  ++      G +    + FD S   D
Sbjct: 210 LMGGFVRKKKLGDARWLFDKMPVR----DAISWNTMISGYAQGGGLSQARRLFDESPTRD 265

Query: 303 YGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAE- 361
                    +T MV    + G L EA     +MP K + + +  +++     K++D+A  
Sbjct: 266 VFT------WTAMVSGYVQNGMLDEAKTFFDEMPEKNEVS-YNAMIAGYVQTKKMDIARE 318

Query: 362 -FAAMNLFNLNPANAA-GCYVQLANIYAAMKKWD 393
            F +M   N++  N     Y Q+ +I  A K +D
Sbjct: 319 LFESMPCRNISSWNTMITGYGQIGDIAQARKFFD 352


>gi|357521591|ref|XP_003631084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525106|gb|AET05560.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 980

 Score =  498 bits (1282), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 246/545 (45%), Positives = 348/545 (63%), Gaps = 8/545 (1%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M V+  ++WN++++G+A Q G L  A+ LFD+ P  DV ++  M+S  + N   +  A  
Sbjct: 230 MPVRDAISWNTMISGYA-QGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGM-LDEAKT 287

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
           FF  +P K+  S+N MI+G+VQ K M  AR+LF +MP +N  SW+ MI+GY + G + +A
Sbjct: 288 FFDEMPEKNEVSYNAMIAGYVQTKKMDIARELFESMPCRNISSWNTMITGYGQIGDIAQA 347

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLL 180
            + F + P +  V+W A+I+GY + G+ E     + L +   +   G   N ++    L 
Sbjct: 348 RKFFDMMPQRDCVSWAAIIAGYAQSGHYE-----EALNMFVEIKQDGESLNRATFGCALS 402

Query: 181 GCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVT 240
            C+ +++L+LGKQ+H    K            L++MY KCG +++A   F  I+ KDVV+
Sbjct: 403 TCADIAALELGKQIHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDVVS 462

Query: 241 WNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV 300
           WN M++GYA+HG G +AL +F+ MK  G+KPD IT V +L AC+H GL+D G +YF SM 
Sbjct: 463 WNTMLAGYARHGFGRQALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSMT 522

Query: 301 NDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLA 360
            DYG+     HYTCM+DLLGRAG+L EA DLI+ MPF+P  A +G LL A R+H   +L 
Sbjct: 523 KDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGAASWGALLGASRIHGNTELG 582

Query: 361 EFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGT 420
           E AA  +F + P N+ G YV L+N+YAA  +W D  ++R  M++  V K+PGYSW+EV  
Sbjct: 583 EKAAEMVFKMEPQNS-GMYVLLSNLYAASGRWVDADKMRSKMRDIGVQKVPGYSWVEVQN 641

Query: 421 VVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEK 480
            +H F  GD  HPE   I+  L+EL+ +M+  GYV   +  LH V EE KE +L +HSEK
Sbjct: 642 KIHTFSVGDCSHPEKERIYAYLEELDLKMREEGYVSLTKLVLHDVEEEEKEHMLKYHSEK 701

Query: 481 LAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCS 540
           LA+AFG++ +P G PIRV KNLRVC DCH A K+IS I  R II+RD+ RFHHF +G CS
Sbjct: 702 LAVAFGILTIPGGRPIRVMKNLRVCEDCHSAIKHISKIVGRLIILRDSHRFHHFNEGFCS 761

Query: 541 CGDYW 545
           CGDYW
Sbjct: 762 CGDYW 766



 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 109/432 (25%), Positives = 202/432 (46%), Gaps = 73/432 (16%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  +++V++N++++G+ +   K   A+ LFD++P+ D+ S+N+ML+  + N   +  A  
Sbjct: 75  MPRRSSVSYNAMISGYLRN-SKFNLARNLFDQMPERDLFSWNVMLTGYVRNCR-LGDARR 132

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
            F  +P KD  SWN+++SG+ Q   + +AR++F  MPEKNS+SW+ +++ Y+  G++++A
Sbjct: 133 LFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNMPEKNSISWNGLLAAYVHNGRIEEA 192

Query: 121 VELFKVA-------------------------------PVKSVVAWTAMISGY------- 142
             LF+                                 PV+  ++W  MISGY       
Sbjct: 193 CLLFESKSDWDLISWNCLMGGFVRKKKLGDARWLFDKMPVRDAISWNTMISGYAQGGGLS 252

Query: 143 -------------------MKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCS 183
                              M  GYV+N   ++       M       N  S ++++ G  
Sbjct: 253 QARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEM----PEKNEVSYNAMIAGYV 308

Query: 184 HLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNA 243
               + + ++    +F+S  C++ ++   +I+ Y + GD+  A K F  + ++D V+W A
Sbjct: 309 QTKKMDIARE----LFESMPCRNISSWNTMITGYGQIGDIAQARKFFDMMPQRDCVSWAA 364

Query: 244 MISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN-D 302
           +I+GYAQ G  E+AL +F ++K +G   +  TF   L  C     ++LG Q     V   
Sbjct: 365 IIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALSTCADIAALELGKQIHGQAVKMG 424

Query: 303 YGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVH--KRLDLA 360
           YG      +   ++ +  + G + EA D  + +  K   + + T+L+    H   R  L 
Sbjct: 425 YGTGCFVGN--ALLAMYFKCGSIDEANDTFEGIEEKDVVS-WNTMLAGYARHGFGRQALT 481

Query: 361 EFAAMNLFNLNP 372
            F +M    + P
Sbjct: 482 VFESMKTAGVKP 493



 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 91/330 (27%), Positives = 164/330 (49%), Gaps = 24/330 (7%)

Query: 7   VNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP 66
           + WN  ++   +  G    A  +F+ +P+   VSYN M+S  L NS   +A  + F ++P
Sbjct: 50  LKWNKAISTHMRN-GHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLAR-NLFDQMP 107

Query: 67  IKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKV 126
            +D  SWN M++G+V+   +  AR LF  MPEK+ VSW++++SGY + G +D+A E+F  
Sbjct: 108 ERDLFSWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDN 167

Query: 127 APVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLS 186
            P K+ ++W  +++ Y+  G +E +            +    + +   +S   L    + 
Sbjct: 168 MPEKNSISWNGLLAAYVHNGRIEEA-----------CLLFESKSDWDLISWNCLMGGFVR 216

Query: 187 SLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMIS 246
             +LG    + +F     +D  +   +IS Y + G L  A +LF E   +DV TW AM+S
Sbjct: 217 KKKLGDA--RWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDESPTRDVFTWTAMVS 274

Query: 247 GYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIA 306
           GY Q+G  ++A   FD+M ++    + +++ A++        +D+  + F+SM       
Sbjct: 275 GYVQNGMLDEAKTFFDEMPEK----NEVSYNAMIAGYVQTKKMDIARELFESMP-----C 325

Query: 307 AKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 336
                +  M+   G+ G + +A      MP
Sbjct: 326 RNISSWNTMITGYGQIGDIAQARKFFDMMP 355



 Score =  131 bits (330), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 91/268 (33%), Positives = 125/268 (46%), Gaps = 58/268 (21%)

Query: 279 LLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 338
            LL   + GL+D G +YF  M  +Y +     HYTCM+DLLGR  +L E           
Sbjct: 770 FLLVVIYTGLLDTGAEYFYPMNEEYSVTPTSKHYTCMIDLLGRVDRLEE----------- 818

Query: 339 PQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARI 398
                 G LL A R+H   +L E AA   F + P N            + + K  DV   
Sbjct: 819 ------GALLGASRIHGNTELGEKAAQMFFKMGPQN------------SGISKMRDVG-- 858

Query: 399 RLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDL 458
                   V K+PGYSW EV   +H F  G  +  E  +I              G++ +L
Sbjct: 859 --------VQKVPGYSWFEVQNKIHTFSVGLFLSRERENI--------------GFLEEL 896

Query: 459 EFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVF-KNLRVCGDCHRATKYISA 517
           +  +    EE KE+ L + SE LA A G++ +P+G P RV  K + VC DC  A K++S 
Sbjct: 897 DLKMRER-EEEKERTLKYLSENLAAALGILTIPVGRPNRVMKKRVYVCEDCRSAIKHMSK 955

Query: 518 IEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           I  R I +RD+   H F +  CSCG+YW
Sbjct: 956 IVGRLITLRDS---HRFNESICSCGEYW 980



 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 88/334 (26%), Positives = 154/334 (46%), Gaps = 28/334 (8%)

Query: 64  RLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVEL 123
           R+   D   WN  IS  ++  +   A  +F  MP ++SVS++AMISGY+   + + A  L
Sbjct: 43  RVKDPDILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNL 102

Query: 124 FKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCS 183
           F   P + + +W  M++     GYV N    D  +L  +M       +  S +S+L G +
Sbjct: 103 FDQMPERDLFSWNVMLT-----GYVRNCRLGDARRLFDLM----PEKDVVSWNSLLSGYA 153

Query: 184 HLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNA 243
               +   ++    VF +   K++ +   L++ Y   G +E+AC LF      D+++WN 
Sbjct: 154 QNGYVDEARE----VFDNMPEKNSISWNGLLAAYVHNGRIEEACLLFESKSDWDLISWNC 209

Query: 244 MISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFD-SMVND 302
           ++ G+ +  K   A  LFDKM       D+I++  ++      G +    + FD S   D
Sbjct: 210 LMGGFVRKKKLGDARWLFDKMPVR----DAISWNTMISGYAQGGGLSQARRLFDESPTRD 265

Query: 303 YGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAE- 361
                    +T MV    + G L EA     +MP K + + +  +++     K++D+A  
Sbjct: 266 VFT------WTAMVSGYVQNGMLDEAKTFFDEMPEKNEVS-YNAMIAGYVQTKKMDIARE 318

Query: 362 -FAAMNLFNLNPANAA-GCYVQLANIYAAMKKWD 393
            F +M   N++  N     Y Q+ +I  A K +D
Sbjct: 319 LFESMPCRNISSWNTMITGYGQIGDIAQARKFFD 352


>gi|224124974|ref|XP_002319471.1| predicted protein [Populus trichocarpa]
 gi|222857847|gb|EEE95394.1| predicted protein [Populus trichocarpa]
          Length = 703

 Score =  494 bits (1273), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 256/572 (44%), Positives = 346/572 (60%), Gaps = 30/572 (5%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  K  V+W  +L G  +  G++ +A+ LFD IP  DVV+   M+   L +   +  A +
Sbjct: 135 MPEKNVVSWTVMLGGLIED-GRVDEARRLFDMIPVKDVVASTNMIGG-LCSEGRLSEARE 192

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
            F  +P ++  +W +MISG+     +  AR LF  MP+KN V+W+AM+ GY   G++++A
Sbjct: 193 IFDEMPQRNVVAWTSMISGYAMNNKVDVARKLFEVMPDKNEVTWTAMLKGYTRSGRINEA 252

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGYV--------------ENSWAE------------ 154
            ELFK  PVK V A   MI G+   G V              + +W+             
Sbjct: 253 AELFKAMPVKPVAACNGMIMGFGLNGEVGKARWVFDQMKEKDDGTWSALIKIYERKGFEL 312

Query: 155 DGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLI 214
           + L L  +M   G+RPN  S+ S+L  C  L+SL  G+QVH  + +S    D    + LI
Sbjct: 313 EALALFSLMQREGVRPNFPSIISILSVCGSLASLDHGRQVHSQLVRSHFDLDIYVSSVLI 372

Query: 215 SMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSI 274
           +MY KCGDL    ++F     KD+V WN++I+GYAQHG GEKAL +F +M   G  PD I
Sbjct: 373 TMYIKCGDLVTGKRVFDRFSSKDIVMWNSIIAGYAQHGFGEKALEVFHEMFSSGAAPDEI 432

Query: 275 TFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKK 334
           TF+ +L AC + G V  G++ F+SM + Y +  K +HY CMVDLLGRAGKL EA++LI+ 
Sbjct: 433 TFIGVLSACGYTGKVKEGLEIFESMKSKYQVDQKTEHYACMVDLLGRAGKLNEAMNLIEN 492

Query: 335 MPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDD 394
           MP +    ++G LLSACR HK LDLAE AA  L  L P+ +AG Y+ L+N+YA+  +W D
Sbjct: 493 MPVEADAIVWGALLSACRTHKNLDLAEIAAKKLLQLEPS-SAGPYILLSNLYASQSRWKD 551

Query: 395 VARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRV-HPELVSIHEKLKELEKRMKLAG 453
           VA +R +M+  NV K PG SWIEV   VH F  G    HPE   I +KL++L   ++ AG
Sbjct: 552 VAELRKTMRARNVSKSPGCSWIEVDNKVHMFTGGGSASHPEHEMIMKKLEKLGASLREAG 611

Query: 454 YVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATK 513
           Y PD  F +H V EE K   L  HSEK+A+A+GL+KVP+G PIRV KNLRVCGDCH A K
Sbjct: 612 YCPDGSFVMHDVDEEDKVHSLRHHSEKMAVAYGLLKVPVGKPIRVMKNLRVCGDCHSAIK 671

Query: 514 YISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
            I+ +  REII+RD  RFHHFKDG CSC D+W
Sbjct: 672 LIAQVTGREIILRDANRFHHFKDGLCSCRDFW 703



 Score =  145 bits (365), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 96/329 (29%), Positives = 166/329 (50%), Gaps = 36/329 (10%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           +  KT  +WN+++AG+   + +  +AQ+LFDK+P+ + +S+N ++S  + N   +  A  
Sbjct: 42  LQSKTVTSWNAIVAGYFHNK-RPAEAQKLFDKMPERNTISWNGLVSGYVKNG-MISEARK 99

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
            F ++P ++  SW +M+ G+VQ+  + +A  LF  MPEKN VSW+ M+ G IE G++D+A
Sbjct: 100 VFDKMPERNVVSWTSMVRGYVQEGLIDEAELLFWRMPEKNVVSWTVMLGGLIEDGRVDEA 159

Query: 121 VELFKVAPVKSVVAWTAMISGY--------------------------MKFGYVENSWAE 154
             LF + PVK VVA T MI G                           M  GY  N+  +
Sbjct: 160 RRLFDMIPVKDVVASTNMIGGLCSEGRLSEAREIFDEMPQRNVVAWTSMISGYAMNNKVD 219

Query: 155 DGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLI 214
              KL  +M       N  + +++L G +    +    +    +FK+   K   A   +I
Sbjct: 220 VARKLFEVMPD----KNEVTWTAMLKGYTRSGRINEAAE----LFKAMPVKPVAACNGMI 271

Query: 215 SMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSI 274
             +   G++  A  +F +++ KD  TW+A+I  Y + G   +AL LF  M+ EG++P+  
Sbjct: 272 MGFGLNGEVGKARWVFDQMKEKDDGTWSALIKIYERKGFELEALALFSLMQREGVRPNFP 331

Query: 275 TFVALLLACNHAGLVDLGIQYFDSMVNDY 303
           + +++L  C     +D G Q    +V  +
Sbjct: 332 SIISILSVCGSLASLDHGRQVHSQLVRSH 360



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 90/328 (27%), Positives = 152/328 (46%), Gaps = 85/328 (25%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G++  A+ +FD +    V S+N +++    N     A    F ++P ++T SWN ++SG+
Sbjct: 30  GQIDRARNIFDDLQSKTVTSWNAIVAGYFHNKRPAEAQ-KLFDKMPERNTISWNGLVSGY 88

Query: 81  VQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMIS 140
           V+   +++AR +F  MPE+N VSW++M+ GY++ G +D+A  LF   P K+VV+WT M+ 
Sbjct: 89  VKNGMISEARKVFDKMPERNVVSWTSMVRGYVQEGLIDEAELLFWRMPEKNVVSWTVMLG 148

Query: 141 GYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK 200
           G ++ G V+ +                                            + +F 
Sbjct: 149 GLIEDGRVDEA--------------------------------------------RRLFD 164

Query: 201 SPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRL 260
               KD  A T +I   C  G L +A ++F E+ +++VV W +MISGYA + K + A +L
Sbjct: 165 MIPVKDVVASTNMIGGLCSEGRLSEAREIFDEMPQRNVVAWTSMISGYAMNNKVDVARKL 224

Query: 261 FDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLG 320
           F+ M D+    + +T+ A+L                               YT       
Sbjct: 225 FEVMPDK----NEVTWTAMLKG-----------------------------YT------- 244

Query: 321 RAGKLVEAVDLIKKMPFKPQPAIFGTLL 348
           R+G++ EA +L K MP KP  A  G ++
Sbjct: 245 RSGRINEAAELFKAMPVKPVAACNGMIM 272


>gi|359487569|ref|XP_002277031.2| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Vitis vinifera]
          Length = 703

 Score =  493 bits (1268), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 264/572 (46%), Positives = 351/572 (61%), Gaps = 30/572 (5%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  K  V+W  +L G  + R ++ +A+ LFD +P  DVV+   M+S        +  A +
Sbjct: 135 MPEKNVVSWTVMLGGLIQVR-RIDEARGLFDIMPVKDVVARTNMISG-YCQEGRLAEARE 192

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
            F  +P ++  SW TMISG+VQ   +  AR LF  MPEKN VSW+AM+ GY + G++++A
Sbjct: 193 LFDEMPRRNVISWTTMISGYVQNGQVDVARKLFEVMPEKNEVSWTAMLMGYTQGGRIEEA 252

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGYV--------------ENSWAE------------ 154
            ELF   PVK+VVA  AMI G+ + G V              + +W+             
Sbjct: 253 SELFDAMPVKAVVACNAMILGFGQNGEVAKARQVFDQIREKDDGTWSAMIKVYERKGFEV 312

Query: 155 DGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLI 214
           + L L  +M   G++ N  SL SVL  C+ L+SL  G+QVH  + KS    D    + LI
Sbjct: 313 EALNLFALMQREGVQSNFPSLISVLSVCASLASLDHGRQVHAELVKSQFDSDVFVASVLI 372

Query: 215 SMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSI 274
           +MY KCGDL  A ++F     KD+V WN++I+GYAQHG  E+AL++F +M   GM  D +
Sbjct: 373 TMYVKCGDLVKARQIFDRFSPKDIVMWNSIITGYAQHGLVEEALQVFHEMCSSGMATDGV 432

Query: 275 TFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKK 334
           TFV +L AC++ G V  G++ F+SM + Y +  K +HY CMVDLLGRAG + +A+DLI+K
Sbjct: 433 TFVGVLSACSYTGKVKEGLEIFESMKSKYLVEPKTEHYACMVDLLGRAGLVNDAMDLIQK 492

Query: 335 MPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDD 394
           MP +    I+G LL ACR H  ++LAE AA  L  L P N AG Y+ L+NIYA+  +W D
Sbjct: 493 MPVEADAIIWGALLGACRTHMNMNLAEVAAKKLLQLEPKN-AGPYILLSNIYASKGRWGD 551

Query: 395 VARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSG-DRVHPELVSIHEKLKELEKRMKLAG 453
           VA +R +M+   V K PG SWIEV   VH F  G    HPEL SI + L++L+  ++ AG
Sbjct: 552 VAELRRNMRVKKVSKSPGCSWIEVEKRVHMFTGGVSTKHPELSSIMKMLEKLDGMLREAG 611

Query: 454 YVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATK 513
           Y PD  F LH V EE K + L  HSE+LA+AFGL+KVP G PIRV KNLRVCGDCH A K
Sbjct: 612 YYPDSSFVLHDVDEEEKVRSLGHHSERLAVAFGLLKVPEGMPIRVMKNLRVCGDCHSAIK 671

Query: 514 YISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
            I+ I  REII+RD  RFHHFKDG CSC DYW
Sbjct: 672 LIAKITGREIILRDANRFHHFKDGFCSCRDYW 703



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 105/366 (28%), Positives = 189/366 (51%), Gaps = 60/366 (16%)

Query: 5   TTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQR 64
             + +NS +A +A+  G+++ A+ +FD++P   +VS+N M++    N+    A +  F +
Sbjct: 15  VAIAYNSQIARYARI-GQIESARRVFDEMPDKGIVSWNSMVAGYFQNNRPREARY-LFDK 72

Query: 65  LPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELF 124
           +P ++T SWN +ISG+V+ + +++AR  F  MPE+N VSW+AM+ GY++ G + +A  LF
Sbjct: 73  MPERNTVSWNGLISGYVKNRMVSEARKAFDTMPERNVVSWTAMVRGYVQEGLVSEAETLF 132

Query: 125 KVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSH 184
              P K+VV+WT M+ G ++   ++ +    GL          I P              
Sbjct: 133 WQMPEKNVVSWTVMLGGLIQVRRIDEA---RGL--------FDIMP-------------- 167

Query: 185 LSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAM 244
                               KD  A T +IS YC+ G L +A +LF E+ R++V++W  M
Sbjct: 168 -------------------VKDVVARTNMISGYCQEGRLAEARELFDEMPRRNVISWTTM 208

Query: 245 ISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYG 304
           ISGY Q+G+ + A +LF+ M ++    + +++ A+L+     G ++   + FD+M     
Sbjct: 209 ISGYVQNGQVDVARKLFEVMPEK----NEVSWTAMLMGYTQGGRIEEASELFDAMPVKAV 264

Query: 305 IAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAA 364
           +A        M+   G+ G++ +A  +  ++  K      GT  +  +V++R    E  A
Sbjct: 265 VAC-----NAMILGFGQNGEVAKARQVFDQIREKDD----GTWSAMIKVYERKGF-EVEA 314

Query: 365 MNLFNL 370
           +NLF L
Sbjct: 315 LNLFAL 320



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 109/372 (29%), Positives = 187/372 (50%), Gaps = 49/372 (13%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQ 63
           K  V+WNS++AG+  Q  + ++A+ LFDK+P+ + VS+N ++S  + N   V  A   F 
Sbjct: 45  KGIVSWNSMVAGYF-QNNRPREARYLFDKMPERNTVSWNGLISGYVKNR-MVSEARKAFD 102

Query: 64  RLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVEL 123
            +P ++  SW  M+ G+VQ+  +++A  LF  MPEKN VSW+ M+ G I+  ++D+A  L
Sbjct: 103 TMPERNVVSWTAMVRGYVQEGLVSEAETLFWQMPEKNVVSWTVMLGGLIQVRRIDEARGL 162

Query: 124 FKVAPVKSVVAWTAMISGY--------------------------MKFGYVENSWAEDGL 157
           F + PVK VVA T MISGY                          M  GYV+N   +   
Sbjct: 163 FDIMPVKDVVARTNMISGYCQEGRLAEARELFDEMPRRNVISWTTMISGYVQNGQVDVAR 222

Query: 158 KLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMY 217
           KL  +M       N  S +++L+G +    ++   +    +F +   K   A   +I  +
Sbjct: 223 KLFEVM----PEKNEVSWTAMLMGYTQGGRIEEASE----LFDAMPVKAVVACNAMILGF 274

Query: 218 CKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFV 277
            + G++  A ++F +I+ KD  TW+AMI  Y + G   +AL LF  M+ EG++ +  + +
Sbjct: 275 GQNGEVAKARQVFDQIREKDDGTWSAMIKVYERKGFEVEALNLFALMQREGVQSNFPSLI 334

Query: 278 ALLLACNHAGLVDLGIQYFDSMV-----NDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLI 332
           ++L  C     +D G Q    +V     +D  +A      + ++ +  + G LV+A  + 
Sbjct: 335 SVLSVCASLASLDHGRQVHAELVKSQFDSDVFVA------SVLITMYVKCGDLVKARQIF 388

Query: 333 KKMPFKPQPAIF 344
            +  F P+  + 
Sbjct: 389 DR--FSPKDIVM 398


>gi|356511265|ref|XP_003524347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 750

 Score =  491 bits (1265), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 246/545 (45%), Positives = 343/545 (62%), Gaps = 12/545 (2%)

Query: 3   VKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNS--DDVVAAFD 60
           V+  ++WN++++G+A Q G L  A+ LF++ P  DV ++  M+   + +   D+    FD
Sbjct: 216 VRDLISWNTMISGYA-QDGDLSQARRLFEESPVRDVFTWTAMVYAYVQDGMLDEARRVFD 274

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
               +P K   S+N MI+G+ Q K M   R+LF  MP  N  SW+ MISGY + G L +A
Sbjct: 275 ---EMPQKREMSYNVMIAGYAQYKRMDMGRELFEEMPFPNIGSWNIMISGYCQNGDLAQA 331

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLL 180
             LF + P +  V+W A+I+GY      +N   E+ + +L  M   G   N S+    L 
Sbjct: 332 RNLFDMMPQRDSVSWAAIIAGY-----AQNGLYEEAMNMLVEMKRDGESLNRSTFCCALS 386

Query: 181 GCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVT 240
            C+ +++L+LGKQVH  V ++   K       L+ MYCKCG +++A  +F  +Q KD+V+
Sbjct: 387 ACADIAALELGKQVHGQVVRTGYEKGCLVGNALVGMYCKCGCIDEAYDVFQGVQHKDIVS 446

Query: 241 WNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV 300
           WN M++GYA+HG G +AL +F+ M   G+KPD IT V +L AC+H GL D G +YF SM 
Sbjct: 447 WNTMLAGYARHGFGRQALTVFESMITAGVKPDEITMVGVLSACSHTGLTDRGTEYFHSMN 506

Query: 301 NDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLA 360
            DYGI     HY CM+DLLGRAG L EA +LI+ MPF+P  A +G LL A R+H  ++L 
Sbjct: 507 KDYGITPNSKHYACMIDLLGRAGCLEEAQNLIRNMPFEPDAATWGALLGASRIHGNMELG 566

Query: 361 EFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGT 420
           E AA  +F + P N +G YV L+N+YAA  +W DV+++RL M++  V K PGYSW+EV  
Sbjct: 567 EQAAEMVFKMEPHN-SGMYVLLSNLYAASGRWVDVSKMRLKMRQIGVQKTPGYSWVEVQN 625

Query: 421 VVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEK 480
            +H F  GD  HPE   I+  L+EL+ +MK  GYV   +  LH V EE K+ +L +HSEK
Sbjct: 626 KIHTFTVGDCFHPEKGRIYAFLEELDLKMKHEGYVSSTKLVLHDVEEEEKKHMLKYHSEK 685

Query: 481 LAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCS 540
           LA+AFG++ +P G PIRV KNLRVC DCH A K+IS I  R IIVRD+ R+HHF +G CS
Sbjct: 686 LAVAFGILTMPSGKPIRVMKNLRVCEDCHNAIKHISKIVGRLIIVRDSHRYHHFSEGICS 745

Query: 541 CGDYW 545
           C DYW
Sbjct: 746 CRDYW 750



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 116/405 (28%), Positives = 199/405 (49%), Gaps = 50/405 (12%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  K   +WN +L G+A+ R +L+DA+ LFD +P+ DVVS+N MLS   + S  V  A D
Sbjct: 90  MPHKDLFSWNLMLTGYARNR-RLRDARMLFDSMPEKDVVSWNAMLSG-YVRSGHVDEARD 147

Query: 61  FFQRLPIKDTASWNTMIS-------------------------------GFVQKKNMAKA 89
            F R+P K++ SWN +++                               G+V++  +  A
Sbjct: 148 VFDRMPHKNSISWNGLLAAYVRSGRLEEARRLFESKSDWELISCNCLMGGYVKRNMLGDA 207

Query: 90  RDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVE 149
           R LF  +P ++ +SW+ MISGY + G L +A  LF+ +PV+ V  WTAM+     + YV+
Sbjct: 208 RQLFDQIPVRDLISWNTMISGYAQDGDLSQARRLFEESPVRDVFTWTAMV-----YAYVQ 262

Query: 150 NSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTA 209
           +   ++  ++   M     +    S + ++ G +    + +G++    +F+     +  +
Sbjct: 263 DGMLDEARRVFDEM----PQKREMSYNVMIAGYAQYKRMDMGRE----LFEEMPFPNIGS 314

Query: 210 LTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGM 269
              +IS YC+ GDL  A  LF  + ++D V+W A+I+GYAQ+G  E+A+ +  +MK +G 
Sbjct: 315 WNIMISGYCQNGDLAQARNLFDMMPQRDSVSWAAIIAGYAQNGLYEEAMNMLVEMKRDGE 374

Query: 270 KPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAV 329
             +  TF   L AC     ++LG Q    +V   G          +V +  + G + EA 
Sbjct: 375 SLNRSTFCCALSACADIAALELGKQVHGQVVRT-GYEKGCLVGNALVGMYCKCGCIDEAY 433

Query: 330 DLIKKMPFKPQPAIFGTLLSACRVH--KRLDLAEFAAMNLFNLNP 372
           D+ + +  K   + + T+L+    H   R  L  F +M    + P
Sbjct: 434 DVFQGVQHKDIVS-WNTMLAGYARHGFGRQALTVFESMITAGVKP 477



 Score =  151 bits (381), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 105/378 (27%), Positives = 183/378 (48%), Gaps = 61/378 (16%)

Query: 29  LFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAK 88
           +FD +P  + VSYN M+S  L N+   +A  D F ++P KD  SWN M++G+ + + +  
Sbjct: 55  VFDAMPLRNSVSYNAMISGYLRNAKFSLAR-DLFDKMPHKDLFSWNLMLTGYARNRRLRD 113

Query: 89  ARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYV 148
           AR LF +MPEK+ VSW+AM+SGY+  G +D+A ++F   P K+ ++W  +++ Y++ G +
Sbjct: 114 ARMLFDSMPEKDVVSWNAMLSGYVRSGHVDEARDVFDRMPHKNSISWNGLLAAYVRSGRL 173

Query: 149 ENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTT 208
           E +                                            + +F+S    +  
Sbjct: 174 EEA--------------------------------------------RRLFESKSDWELI 189

Query: 209 ALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEG 268
           +   L+  Y K   L DA +LF +I  +D+++WN MISGYAQ G   +A RLF    +E 
Sbjct: 190 SCNCLMGGYVKRNMLGDARQLFDQIPVRDLISWNTMISGYAQDGDLSQARRLF----EES 245

Query: 269 MKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEA 328
              D  T+ A++ A    G++D   + FD M     ++     Y  M+    +  ++   
Sbjct: 246 PVRDVFTWTAMVYAYVQDGMLDEARRVFDEMPQKREMS-----YNVMIAGYAQYKRMDMG 300

Query: 329 VDLIKKMPFKPQPAIFGTLLSA-CRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYA 387
            +L ++MPF P    +  ++S  C   +  DLA+  A NLF++ P   +  +  +   YA
Sbjct: 301 RELFEEMPF-PNIGSWNIMISGYC---QNGDLAQ--ARNLFDMMPQRDSVSWAAIIAGYA 354

Query: 388 AMKKWDDVARIRLSMKEN 405
               +++   + + MK +
Sbjct: 355 QNGLYEEAMNMLVEMKRD 372


>gi|297609253|ref|NP_001062888.2| Os09g0327200 [Oryza sativa Japonica Group]
 gi|255678787|dbj|BAF24802.2| Os09g0327200 [Oryza sativa Japonica Group]
          Length = 739

 Score =  486 bits (1252), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 240/533 (45%), Positives = 346/533 (64%), Gaps = 29/533 (5%)

Query: 7   VNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP 66
           ++WN++++G+  Q GK+ +A+ELFD++P  DVVS+NIM+S       D+V A   F   P
Sbjct: 194 ISWNALMSGYV-QWGKMSEARELFDRMPGRDVVSWNIMVSG-YARRGDMVEARRLFDAAP 251

Query: 67  IKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKV 126
           ++D  +W  ++SG+ Q   + +AR +F AMPE+N+VSW+AM++ YI+   +D+A ELF +
Sbjct: 252 VRDVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNM 311

Query: 127 APVKSVVAWTAMISGYMKFGYVEN--------------SWA------------EDGLKLL 160
            P ++V +W  M++GY + G +E               SWA            E+ L+L 
Sbjct: 312 MPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLF 371

Query: 161 RMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKC 220
             M   G   N S+ + VL  C+ +++L+ G Q+H  + ++           L++MY KC
Sbjct: 372 IEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKC 431

Query: 221 GDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 280
           G++EDA   F E++ +DVV+WN MI+GYA+HG G++AL +FD M+    KPD IT V +L
Sbjct: 432 GNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVL 491

Query: 281 LACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQ 340
            AC+H+GLV+ GI YF SM +D+G+ AKP+HYTCM+DLLGRAG+L EA DL+K MPF+P 
Sbjct: 492 AACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPD 551

Query: 341 PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRL 400
             ++G LL A R+H+  +L   AA  +F L P N AG YV L+NIYA+  KW D  ++R+
Sbjct: 552 STMWGALLGASRIHRNPELGRSAAEKIFELEPEN-AGMYVLLSNIYASSGKWRDARKMRV 610

Query: 401 SMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEF 460
            M+E  V K+PG+SWIEV   VH F +GD VHPE   I+  L++L+ RMK AGYV   + 
Sbjct: 611 MMEERGVKKVPGFSWIEVQNKVHTFSAGDCVHPEKEKIYAFLEDLDMRMKKAGYVSATDM 670

Query: 461 ALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATK 513
            LH V EE KE +L +HSEKLA+A+G++ +P G PIRV KNLRVCGDCH A K
Sbjct: 671 VLHDVEEEEKEHMLKYHSEKLAVAYGILNIPPGRPIRVIKNLRVCGDCHNAFK 723



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 93/307 (30%), Positives = 157/307 (51%), Gaps = 16/307 (5%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M V+ +V +N +++  A   G +  A+  FD  P+ D VS+N ML+  + N   V  A  
Sbjct: 126 MPVRDSVTYNVMISSHANH-GLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGR-VEEARG 183

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
            F      D  SWN ++SG+VQ   M++AR+LF  MP ++ VSW+ M+SGY   G + +A
Sbjct: 184 LFNSRTEWDVISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEA 243

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLL 180
             LF  APV+ V  WTA++SGY + G +E +         R +       NA S ++++ 
Sbjct: 244 RRLFDAAPVRDVFTWTAVVSGYAQNGMLEEA---------RRVFDAMPERNAVSWNAMVA 294

Query: 181 GCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVT 240
                  +   K+    +F    C++  +   +++ Y + G LE+A  +F  + +KD V+
Sbjct: 295 AYIQRRMMDEAKE----LFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVS 350

Query: 241 WNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV 300
           W AM++ Y+Q G  E+ L+LF +M   G   +   F  +L  C     ++ G+Q    ++
Sbjct: 351 WAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLI 410

Query: 301 N-DYGIA 306
              YG+ 
Sbjct: 411 RAGYGVG 417



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 92/338 (27%), Positives = 168/338 (49%), Gaps = 55/338 (16%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  ++T  +N++LAG++   G+L  A  LF  IP+PD  SYN +L  + ++S  +  A  
Sbjct: 64  MPRRSTSTYNAMLAGYSAN-GRLPLAASLFRAIPRPDNYSYNTLLHALAVSSS-LADARG 121

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
            F  +P++D+ ++N MIS       ++ AR  F   PEK++VSW+ M++ Y+  G++++A
Sbjct: 122 LFDEMPVRDSVTYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEA 181

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLL 180
             LF       V++W A++SGY+++G +                                
Sbjct: 182 RGLFNSRTEWDVISWNALMSGYVQWGKM-------------------------------- 209

Query: 181 GCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVT 240
                       +  +L  + P  +D  +   ++S Y + GD+ +A +LF     +DV T
Sbjct: 210 -----------SEARELFDRMP-GRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFT 257

Query: 241 WNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV 300
           W A++SGYAQ+G  E+A R+FD M +     +++++ A++ A     ++D   + F+ M+
Sbjct: 258 WTAVVSGYAQNGMLEEARRVFDAMPER----NAVSWNAMVAAYIQRRMMDEAKELFN-MM 312

Query: 301 NDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 338
               +A+    +  M+    +AG L EA  +   MP K
Sbjct: 313 PCRNVAS----WNTMLTGYAQAGMLEEAKAVFDTMPQK 346


>gi|224121210|ref|XP_002318526.1| predicted protein [Populus trichocarpa]
 gi|222859199|gb|EEE96746.1| predicted protein [Populus trichocarpa]
          Length = 552

 Score =  486 bits (1251), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 237/555 (42%), Positives = 349/555 (62%), Gaps = 24/555 (4%)

Query: 12  VLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTA 71
           +++G+ +   K   A++LFDK+P+ D+ S+N+ML+  + N D +  A   F+R+P +D  
Sbjct: 1   MISGYLRNH-KFDLARDLFDKMPERDLFSWNVMLTGYVRNRD-LKTARALFERMPERDIV 58

Query: 72  SWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKS 131
           SWN M+SG+ Q   + +AR++F  MP KN +SW+ +++ Y++ G+++ A  LF+     +
Sbjct: 59  SWNAMLSGYAQNGFVDEAREIFYKMPLKNGISWNGLLAAYVQNGRIEDAKRLFESKMDWT 118

Query: 132 VVAWTAMISGYMK---------------------FGYVENSWAEDGLKLLRMMIGLGIRP 170
           +V+W  ++ G+++                      GY +N  +E+ L     M     R 
Sbjct: 119 LVSWNCLMGGFVRKRRNLFDNMPQRDSISWSAMIAGYSQNGCSEEALHFFVEMQRDCERL 178

Query: 171 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 230
           N SS +  L  CS++++L+LG+Q+H  + K+           L++MYCKCG +++A   F
Sbjct: 179 NRSSFTCALSTCSNIAALELGRQLHCRLVKAGYQTGWYVGNALLAMYCKCGSIDEARDAF 238

Query: 231 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVD 290
            EI  KDVV+WN MI GYA+HG GE+AL +F+ MK  G++PD  T V++L AC+HAGLVD
Sbjct: 239 QEILEKDVVSWNTMIHGYARHGFGEEALTVFELMKTTGIRPDDATMVSVLAACSHAGLVD 298

Query: 291 LGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSA 350
            G +YF SM  DYGI AK  HYTCMVDLLGRAG+L EA +L+K MPF+P  A +G LL A
Sbjct: 299 QGSEYFYSMNRDYGITAKLVHYTCMVDLLGRAGQLEEAQNLMKNMPFEPDAATWGALLGA 358

Query: 351 CRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKM 410
            R+H   +L E AA  +F + P N +G Y+ L+ +YAA  +W D  ++RL M+   V K+
Sbjct: 359 SRIHGNTELGEKAAQIIFEMEPHN-SGMYILLSKLYAASGRWSDAGKMRLEMRNKGVKKV 417

Query: 411 PGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVK 470
           PGYSW+EV   +H F+ GD  HP    I+  L+E++ ++K  GY+       H V EE K
Sbjct: 418 PGYSWLEVQNKIHTFKVGDTSHPHTDKIYTFLEEMDLKLKQEGYISSTNLVFHDVEEEEK 477

Query: 471 EQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTR 530
             +L +HSEKLA+A+G++ +P G PIRV KNLRVC DCH A KYIS I  R II+RD  R
Sbjct: 478 VHMLKYHSEKLAVAYGILYIPAGRPIRVIKNLRVCEDCHNAIKYISKIVGRLIILRDNHR 537

Query: 531 FHHFKDGTCSCGDYW 545
           FH+F+ G+CSC D+W
Sbjct: 538 FHYFEGGSCSCRDFW 552



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 72/273 (26%), Positives = 131/273 (47%), Gaps = 23/273 (8%)

Query: 5   TTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLN--SDDVVAAFDFF 62
           T V+WN ++ GF ++R      + LFD +PQ D +S++ M++    N  S++ +  F   
Sbjct: 118 TLVSWNCLMGGFVRKR------RNLFDNMPQRDSISWSAMIAGYSQNGCSEEALHFFVEM 171

Query: 63  QRLPIK-DTASWNTMISGFVQKKNMAKARDLFLAMPEKN-SVSW---SAMISGYIECGQL 117
           QR   + + +S+   +S       +   R L   + +      W   +A+++ Y +CG +
Sbjct: 172 QRDCERLNRSSFTCALSTCSNIAALELGRQLHCRLVKAGYQTGWYVGNALLAMYCKCGSI 231

Query: 118 DKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSS 177
           D+A + F+    K VV+W  MI GY + G+      E+ L +  +M   GIRP+ +++ S
Sbjct: 232 DEARDAFQEILEKDVVSWNTMIHGYARHGF-----GEEALTVFELMKTTGIRPDDATMVS 286

Query: 178 VLLGCSHLSSLQLGKQ-VHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ-R 235
           VL  CSH   +  G +  + +     +       T ++ +  + G LE+A  L   +   
Sbjct: 287 VLAACSHAGLVDQGSEYFYSMNRDYGITAKLVHYTCMVDLLGRAGQLEEAQNLMKNMPFE 346

Query: 236 KDVVTWNAMISGYAQHGK---GEKALRLFDKMK 265
            D  TW A++     HG    GEKA ++  +M+
Sbjct: 347 PDAATWGALLGASRIHGNTELGEKAAQIIFEME 379


>gi|297722071|ref|NP_001173399.1| Os03g0317100 [Oryza sativa Japonica Group]
 gi|255674461|dbj|BAH92127.1| Os03g0317100 [Oryza sativa Japonica Group]
          Length = 706

 Score =  481 bits (1237), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 243/572 (42%), Positives = 343/572 (59%), Gaps = 30/572 (5%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  +  V++  +L G     G++ +A+ LFD++P  DVV++  MLS     +  +  A  
Sbjct: 138 MPERNHVSYTVLLGGLLDA-GRVNEARRLFDEMPDRDVVAWTAMLSG-YCQAGRITEARA 195

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
            F  +P ++  SW  MISG+ Q   +  AR LF  MPE+N VSW+AM+ GYI+ G ++ A
Sbjct: 196 LFDEMPKRNVVSWTAMISGYAQNGEVNLARKLFEVMPERNEVSWTAMLVGYIQAGHVEDA 255

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFG--------------------------YVENSWAE 154
            ELF   P   V A  AM+ G+ + G                          Y +N +  
Sbjct: 256 AELFNAMPEHPVAACNAMMVGFGQRGMVDAAKTVFEKMCERDDGTWSAMIKAYEQNEFLM 315

Query: 155 DGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLI 214
           + L   R M+  G+RPN  S+ S+L  C+ L+ L  G++VH  + +     D  A++ LI
Sbjct: 316 EALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAMLRCSFDMDVFAVSALI 375

Query: 215 SMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSI 274
           +MY KCG+L+ A ++F   + KD+V WN+MI+GYAQHG GE+AL +F  M+  GM PD I
Sbjct: 376 TMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGI 435

Query: 275 TFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKK 334
           T++  L AC++ G V  G + F+SM  +  I    +HY+CMVDLLGR+G + EA DLIK 
Sbjct: 436 TYIGALTACSYTGKVKEGREIFNSMTVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKN 495

Query: 335 MPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDD 394
           MP +P   I+G L+ ACR+H+  ++AEFAA  L  L P N AG YV L++IY ++ +W+D
Sbjct: 496 MPVEPDAVIWGALMGACRMHRNAEIAEFAAKKLLELEPGN-AGPYVLLSHIYTSVGRWED 554

Query: 395 VARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRV-HPELVSIHEKLKELEKRMKLAG 453
            +++R  +   N+ K PG SWIE    VH F SGD + HPE  +I   L++L+  +  +G
Sbjct: 555 ASKMRKFISSRNLNKSPGCSWIEYDKRVHLFTSGDVLAHPEHAAILRILEKLDGLLMESG 614

Query: 454 YVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATK 513
           Y  D  F LH + EE K   L +HSE+ A+A+GL+K+P G PIRV KNLRVCGDCH A K
Sbjct: 615 YSADGSFVLHDIDEEQKSHSLRYHSERQAVAYGLLKIPEGMPIRVMKNLRVCGDCHSAIK 674

Query: 514 YISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
            I+ I  REII+RD  RFHHFKDG CSC DYW
Sbjct: 675 LIAKITSREIILRDANRFHHFKDGFCSCRDYW 706



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 88/333 (26%), Positives = 165/333 (49%), Gaps = 48/333 (14%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQ-ELFDKIPQPDVVSYNIMLSCILLNSD---DVV 56
           M ++TT ++N++LAG+ + R  L DA   LF ++P  D+ SYN ++S + L      D  
Sbjct: 43  MPLRTTASYNALLAGYFRNR--LPDAALGLFRRMPSRDLASYNALISGLSLRRQTLPDAA 100

Query: 57  AAF-----------------------------DFFQRLPIKDTASWNTMISGFVQKKNMA 87
           AA                                FQ++P ++  S+  ++ G +    + 
Sbjct: 101 AALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPERNHVSYTVLLGGLLDAGRVN 160

Query: 88  KARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGY 147
           +AR LF  MP+++ V+W+AM+SGY + G++ +A  LF   P ++VV+WTAMISGY + G 
Sbjct: 161 EARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEMPKRNVVSWTAMISGYAQNGE 220

Query: 148 VENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDT 207
           V          L R +  +    N  S +++L+G      ++   ++   + + P+    
Sbjct: 221 V---------NLARKLFEVMPERNEVSWTAMLVGYIQAGHVEDAAELFNAMPEHPV---- 267

Query: 208 TALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE 267
            A   ++  + + G ++ A  +F ++  +D  TW+AMI  Y Q+    +AL  F +M   
Sbjct: 268 AACNAMMVGFGQRGMVDAAKTVFEKMCERDDGTWSAMIKAYEQNEFLMEALSTFREMLWR 327

Query: 268 GMKPDSITFVALLLACNHAGLVDLGIQYFDSMV 300
           G++P+  + +++L  C    ++D G +   +M+
Sbjct: 328 GVRPNYPSVISILTVCAALAVLDYGREVHAAML 360



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 77/256 (30%), Positives = 141/256 (55%), Gaps = 25/256 (9%)

Query: 49  LLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMI 108
           L  + ++  A   F+ +P++ TAS+N +++G+ + +    A  LF  MP ++  S++A+I
Sbjct: 27  LARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLASYNALI 86

Query: 109 SGYIECGQL--DKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGL 166
           SG     Q   D A  L  +    SVV++T+++ GY++ G +      D ++L + M   
Sbjct: 87  SGLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLL-----ADAIRLFQQM--- 138

Query: 167 GIRPNASSLS-SVLLGCSHLSSLQLGK--QVHQLVFKSPLCKDTTALTPLISMYCKCGDL 223
              P  + +S +VLLG      L  G+  +  +L  + P  +D  A T ++S YC+ G +
Sbjct: 139 ---PERNHVSYTVLLG----GLLDAGRVNEARRLFDEMP-DRDVVAWTAMLSGYCQAGRI 190

Query: 224 EDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC 283
            +A  LF E+ +++VV+W AMISGYAQ+G+   A +LF+ M +     + +++ A+L+  
Sbjct: 191 TEARALFDEMPKRNVVSWTAMISGYAQNGEVNLARKLFEVMPER----NEVSWTAMLVGY 246

Query: 284 NHAGLVDLGIQYFDSM 299
             AG V+   + F++M
Sbjct: 247 IQAGHVEDAAELFNAM 262


>gi|108707831|gb|ABF95626.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125586055|gb|EAZ26719.1| hypothetical protein OsJ_10627 [Oryza sativa Japonica Group]
          Length = 798

 Score =  479 bits (1233), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 243/572 (42%), Positives = 343/572 (59%), Gaps = 30/572 (5%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  +  V++  +L G     G++ +A+ LFD++P  DVV++  MLS     +  +  A  
Sbjct: 138 MPERNHVSYTVLLGGLLDA-GRVNEARRLFDEMPDRDVVAWTAMLSG-YCQAGRITEARA 195

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
            F  +P ++  SW  MISG+ Q   +  AR LF  MPE+N VSW+AM+ GYI+ G ++ A
Sbjct: 196 LFDEMPKRNVVSWTAMISGYAQNGEVNLARKLFEVMPERNEVSWTAMLVGYIQAGHVEDA 255

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFG--------------------------YVENSWAE 154
            ELF   P   V A  AM+ G+ + G                          Y +N +  
Sbjct: 256 AELFNAMPEHPVAACNAMMVGFGQRGMVDAAKTVFEKMCERDDGTWSAMIKAYEQNEFLM 315

Query: 155 DGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLI 214
           + L   R M+  G+RPN  S+ S+L  C+ L+ L  G++VH  + +     D  A++ LI
Sbjct: 316 EALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAMLRCSFDMDVFAVSALI 375

Query: 215 SMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSI 274
           +MY KCG+L+ A ++F   + KD+V WN+MI+GYAQHG GE+AL +F  M+  GM PD I
Sbjct: 376 TMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGI 435

Query: 275 TFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKK 334
           T++  L AC++ G V  G + F+SM  +  I    +HY+CMVDLLGR+G + EA DLIK 
Sbjct: 436 TYIGALTACSYTGKVKEGREIFNSMTVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKN 495

Query: 335 MPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDD 394
           MP +P   I+G L+ ACR+H+  ++AEFAA  L  L P N AG YV L++IY ++ +W+D
Sbjct: 496 MPVEPDAVIWGALMGACRMHRNAEIAEFAAKKLLELEPGN-AGPYVLLSHIYTSVGRWED 554

Query: 395 VARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRV-HPELVSIHEKLKELEKRMKLAG 453
            +++R  +   N+ K PG SWIE    VH F SGD + HPE  +I   L++L+  +  +G
Sbjct: 555 ASKMRKFISSRNLNKSPGCSWIEYDKRVHLFTSGDVLAHPEHAAILRILEKLDGLLMESG 614

Query: 454 YVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATK 513
           Y  D  F LH + EE K   L +HSE+ A+A+GL+K+P G PIRV KNLRVCGDCH A K
Sbjct: 615 YSADGSFVLHDIDEEQKSHSLRYHSERQAVAYGLLKIPEGMPIRVMKNLRVCGDCHSAIK 674

Query: 514 YISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
            I+ I  REII+RD  RFHHFKDG CSC DYW
Sbjct: 675 LIAKITSREIILRDANRFHHFKDGFCSCRDYW 706



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 88/333 (26%), Positives = 165/333 (49%), Gaps = 48/333 (14%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQ-ELFDKIPQPDVVSYNIMLSCILLNSD---DVV 56
           M ++TT ++N++LAG+ + R  L DA   LF ++P  D+ SYN ++S + L      D  
Sbjct: 43  MPLRTTASYNALLAGYFRNR--LPDAALGLFRRMPSRDLASYNALISGLSLRRQTLPDAA 100

Query: 57  AAF-----------------------------DFFQRLPIKDTASWNTMISGFVQKKNMA 87
           AA                                FQ++P ++  S+  ++ G +    + 
Sbjct: 101 AALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPERNHVSYTVLLGGLLDAGRVN 160

Query: 88  KARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGY 147
           +AR LF  MP+++ V+W+AM+SGY + G++ +A  LF   P ++VV+WTAMISGY + G 
Sbjct: 161 EARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEMPKRNVVSWTAMISGYAQNGE 220

Query: 148 VENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDT 207
           V          L R +  +    N  S +++L+G      ++   ++   + + P+    
Sbjct: 221 V---------NLARKLFEVMPERNEVSWTAMLVGYIQAGHVEDAAELFNAMPEHPV---- 267

Query: 208 TALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE 267
            A   ++  + + G ++ A  +F ++  +D  TW+AMI  Y Q+    +AL  F +M   
Sbjct: 268 AACNAMMVGFGQRGMVDAAKTVFEKMCERDDGTWSAMIKAYEQNEFLMEALSTFREMLWR 327

Query: 268 GMKPDSITFVALLLACNHAGLVDLGIQYFDSMV 300
           G++P+  + +++L  C    ++D G +   +M+
Sbjct: 328 GVRPNYPSVISILTVCAALAVLDYGREVHAAML 360



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 85/292 (29%), Positives = 157/292 (53%), Gaps = 30/292 (10%)

Query: 49  LLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMI 108
           L  + ++  A   F+ +P++ TAS+N +++G+ + +    A  LF  MP ++  S++A+I
Sbjct: 27  LARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLASYNALI 86

Query: 109 SGYIECGQL--DKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGL 166
           SG     Q   D A  L  +    SVV++T+++ GY++ G +      D ++L + M   
Sbjct: 87  SGLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLL-----ADAIRLFQQM--- 138

Query: 167 GIRPNASSLS-SVLLGCSHLSSLQLGK--QVHQLVFKSPLCKDTTALTPLISMYCKCGDL 223
              P  + +S +VLLG      L  G+  +  +L  + P  +D  A T ++S YC+ G +
Sbjct: 139 ---PERNHVSYTVLLG----GLLDAGRVNEARRLFDEMP-DRDVVAWTAMLSGYCQAGRI 190

Query: 224 EDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC 283
            +A  LF E+ +++VV+W AMISGYAQ+G+   A +LF+ M +     + +++ A+L+  
Sbjct: 191 TEARALFDEMPKRNVVSWTAMISGYAQNGEVNLARKLFEVMPER----NEVSWTAMLVGY 246

Query: 284 NHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335
             AG V+   + F++M  ++ +AA       M+   G+ G +  A  + +KM
Sbjct: 247 IQAGHVEDAAELFNAM-PEHPVAA----CNAMMVGFGQRGMVDAAKTVFEKM 293


>gi|125543632|gb|EAY89771.1| hypothetical protein OsI_11313 [Oryza sativa Indica Group]
          Length = 798

 Score =  476 bits (1224), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 241/572 (42%), Positives = 342/572 (59%), Gaps = 30/572 (5%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  +  V++  +L G     G++ +A+ LFD++P  DVV++  MLS     +  +  A  
Sbjct: 138 MPERNHVSYTVLLGGLLDA-GRVNEARRLFDEMPDRDVVAWTAMLSG-YCQAGRITEARA 195

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
            F  +P ++  SW  MISG+ Q   +  AR LF  MPE+N VSW+AM+ GYI+ G ++ A
Sbjct: 196 LFDEMPKRNVVSWTAMISGYAQNGEVNLARKLFEVMPERNEVSWTAMLVGYIQAGHVEDA 255

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFG--------------------------YVENSWAE 154
            ELF   P   V A  AM+ G+ + G                          Y +N +  
Sbjct: 256 AELFNAMPEHPVAACNAMMVGFGQRGMVDAAKTVFEKMRERDDGTWSAMIKAYEQNEFLM 315

Query: 155 DGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLI 214
           + L   R M+  G+RPN  S+ S+L  C+ L+ L  G++VH  + +     D  A++ LI
Sbjct: 316 EALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAMLRCSFDMDVFAVSALI 375

Query: 215 SMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSI 274
           +MY KCG+L+ A ++F   + KD+V WN+MI+GYAQHG GE+AL +F  M+  GM PD I
Sbjct: 376 TMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGI 435

Query: 275 TFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKK 334
           T++  L AC++ G V  G + F+SM  +  I    +HY+CMVDLLGR+G + EA DLIK 
Sbjct: 436 TYIGALTACSYTGKVKEGREIFNSMTVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKN 495

Query: 335 MPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDD 394
           MP +P   I+G L+ ACR+H+  ++AE AA  L  L P N AG YV L++IY ++ +W+D
Sbjct: 496 MPVEPDAVIWGALMGACRMHRNAEIAEVAAKKLLELEPGN-AGPYVLLSHIYTSVGRWED 554

Query: 395 VARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRV-HPELVSIHEKLKELEKRMKLAG 453
            +++R  +   N+ K PG SWIE    VH F SGD + HPE  +I   L++L+  +  +G
Sbjct: 555 ASKMRKFISSRNLNKSPGCSWIEYDKRVHLFTSGDVLAHPEHAAILRILEKLDGLLMESG 614

Query: 454 YVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATK 513
           Y  D  F LH + EE K   L +HSE+ A+A+GL+K+P G PIRV KNLRVCGDCH A K
Sbjct: 615 YSADGSFVLHDIDEEQKSHSLRYHSERQAVAYGLLKIPEGMPIRVMKNLRVCGDCHSAIK 674

Query: 514 YISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
            I+ I  REI++RD  RFHHFKDG CSC DYW
Sbjct: 675 LIAKITSREIVLRDANRFHHFKDGFCSCRDYW 706



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 88/333 (26%), Positives = 166/333 (49%), Gaps = 48/333 (14%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQ-ELFDKIPQPDVVSYNIMLSCILLNSD---DVV 56
           M ++TT ++N++LAG+ + R  L DA   LF ++P  D+ SYN ++S + L      D  
Sbjct: 43  MPLRTTASYNALLAGYFRNR--LPDAALGLFRRMPSRDLASYNALISGLSLRRQTLPDAA 100

Query: 57  AAF-----------------------------DFFQRLPIKDTASWNTMISGFVQKKNMA 87
           AA                                FQ++P ++  S+  ++ G +    + 
Sbjct: 101 AALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPERNHVSYTVLLGGLLDAGRVN 160

Query: 88  KARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGY 147
           +AR LF  MP+++ V+W+AM+SGY + G++ +A  LF   P ++VV+WTAMISGY + G 
Sbjct: 161 EARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEMPKRNVVSWTAMISGYAQNGE 220

Query: 148 VENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDT 207
           V          L R +  +    N  S +++L+G      ++   ++   + + P+    
Sbjct: 221 V---------NLARKLFEVMPERNEVSWTAMLVGYIQAGHVEDAAELFNAMPEHPV---- 267

Query: 208 TALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE 267
            A   ++  + + G ++ A  +F +++ +D  TW+AMI  Y Q+    +AL  F +M   
Sbjct: 268 AACNAMMVGFGQRGMVDAAKTVFEKMRERDDGTWSAMIKAYEQNEFLMEALSTFREMLWR 327

Query: 268 GMKPDSITFVALLLACNHAGLVDLGIQYFDSMV 300
           G++P+  + +++L  C    ++D G +   +M+
Sbjct: 328 GVRPNYPSVISILTVCAALAVLDYGREVHAAML 360



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 85/292 (29%), Positives = 157/292 (53%), Gaps = 30/292 (10%)

Query: 49  LLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMI 108
           L  + ++  A   F+ +P++ TAS+N +++G+ + +    A  LF  MP ++  S++A+I
Sbjct: 27  LARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLASYNALI 86

Query: 109 SGYIECGQL--DKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGL 166
           SG     Q   D A  L  +    SVV++T+++ GY++ G +      D ++L + M   
Sbjct: 87  SGLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLL-----ADAIRLFQQM--- 138

Query: 167 GIRPNASSLS-SVLLGCSHLSSLQLGK--QVHQLVFKSPLCKDTTALTPLISMYCKCGDL 223
              P  + +S +VLLG      L  G+  +  +L  + P  +D  A T ++S YC+ G +
Sbjct: 139 ---PERNHVSYTVLLG----GLLDAGRVNEARRLFDEMP-DRDVVAWTAMLSGYCQAGRI 190

Query: 224 EDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC 283
            +A  LF E+ +++VV+W AMISGYAQ+G+   A +LF+ M +     + +++ A+L+  
Sbjct: 191 TEARALFDEMPKRNVVSWTAMISGYAQNGEVNLARKLFEVMPER----NEVSWTAMLVGY 246

Query: 284 NHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335
             AG V+   + F++M  ++ +AA       M+   G+ G +  A  + +KM
Sbjct: 247 IQAGHVEDAAELFNAM-PEHPVAA----CNAMMVGFGQRGMVDAAKTVFEKM 293


>gi|357112489|ref|XP_003558041.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Brachypodium distachyon]
          Length = 706

 Score =  473 bits (1217), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 244/572 (42%), Positives = 341/572 (59%), Gaps = 30/572 (5%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  +  V +  +L GF    G++ +A++LFD++P  DVV+   MLS     +  +  A  
Sbjct: 138 MPERNHVTYTVLLGGFLDA-GRVNEARKLFDEMPDKDVVARTAMLSG-YCQAGRITEARA 195

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
            F  +P ++  SW  MISG+ Q   +  AR LF  MP++N VSW+AM+ GYI+ G ++ A
Sbjct: 196 LFDEMPKRNVVSWTAMISGYAQNGKVILARKLFEVMPDRNEVSWTAMLVGYIQAGHVEDA 255

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFG--------------------------YVENSWAE 154
            +LF   P   V A  AM+ G+ + G                          Y +N +  
Sbjct: 256 EDLFNAMPDHPVAACNAMMVGFGQHGMVDAAKAMFERMCARDDGTWSAMIKVYEQNEFLM 315

Query: 155 DGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLI 214
           + L   R M+  GIRPN +S  S+L  C+ L++   G+++H  + +     D  A++ LI
Sbjct: 316 EALSTFREMLCRGIRPNYTSFISILTVCAALATADYGRELHAAMLRCSFDTDVFAVSALI 375

Query: 215 SMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSI 274
           +MY KCG+L+ A ++F   + KDVV WN+MI+GYAQHG GE+AL +FD ++   M PD I
Sbjct: 376 TMYIKCGNLDKAKRVFNMFEPKDVVMWNSMITGYAQHGLGEEALGIFDDLRLARMAPDGI 435

Query: 275 TFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKK 334
           T++ +L AC++ G V  G + F+SM  +  I     HY+CMVDLLGRAG + EA+DLI  
Sbjct: 436 TYIGVLTACSYTGKVKEGREIFNSMGMNSSIRLGAAHYSCMVDLLGRAGLVDEALDLINN 495

Query: 335 MPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDD 394
           MP +P   I+G L+ ACR+HK  ++AE AA  L  L P  +AG YV L++IY +  +W+D
Sbjct: 496 MPVEPDAIIWGALMGACRMHKNAEIAEVAAKKLLELEPG-SAGPYVLLSHIYTSTGRWED 554

Query: 395 VARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRV-HPELVSIHEKLKELEKRMKLAG 453
            + +R  +   N+ K PG SWIE   +VH F SGD + HPE   I   L+EL+  +  +G
Sbjct: 555 ASDMRKFISSRNLNKSPGCSWIEYNKMVHLFTSGDVLSHPEHAIILNMLEELDGLLMESG 614

Query: 454 YVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATK 513
           Y  D  F LH V EE K Q L +HSE+ A+A+GL+KVP G PIRV KNLRVCGDCH A K
Sbjct: 615 YSADGSFVLHDVDEEQKAQSLRYHSERQAVAYGLLKVPAGMPIRVMKNLRVCGDCHSAIK 674

Query: 514 YISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
            I+ I  REII+RD  RFHHFKDG CSC DYW
Sbjct: 675 LITKITSREIILRDANRFHHFKDGLCSCRDYW 706



 Score =  121 bits (304), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 80/294 (27%), Positives = 151/294 (51%), Gaps = 15/294 (5%)

Query: 8   NWNSVLAGFAKQRGKLKDAQELFDKIP-QPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP 66
           ++N+++AG + +R  L DA      IP  P VVS+  +L   + +   +  A   F ++P
Sbjct: 81  SYNALIAGLSLRRHTLPDAAAALASIPLPPSVVSFTSLLRGYVRHGL-LADAIRLFHQMP 139

Query: 67  IKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKV 126
            ++  ++  ++ GF+    + +AR LF  MP+K+ V+ +AM+SGY + G++ +A  LF  
Sbjct: 140 ERNHVTYTVLLGGFLDAGRVNEARKLFDEMPDKDVVARTAMLSGYCQAGRITEARALFDE 199

Query: 127 APVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLS 186
            P ++VV+WTAMISGY + G V          L R +  +    N  S +++L+G     
Sbjct: 200 MPKRNVVSWTAMISGYAQNGKV---------ILARKLFEVMPDRNEVSWTAMLVGYIQAG 250

Query: 187 SLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMIS 246
            ++  + +   +   P+     A   ++  + + G ++ A  +F  +  +D  TW+AMI 
Sbjct: 251 HVEDAEDLFNAMPDHPV----AACNAMMVGFGQHGMVDAAKAMFERMCARDDGTWSAMIK 306

Query: 247 GYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV 300
            Y Q+    +AL  F +M   G++P+  +F+++L  C      D G +   +M+
Sbjct: 307 VYEQNEFLMEALSTFREMLCRGIRPNYTSFISILTVCAALATADYGRELHAAML 360



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 86/277 (31%), Positives = 151/277 (54%), Gaps = 27/277 (9%)

Query: 36  PDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLA 95
           P VV+ N  ++  L+ + ++  A   F  +P++ TAS+N +I+G+ +      A  LF  
Sbjct: 15  PAVVAANARIAW-LVRAGNIEGARAAFDAMPLRTTASYNALIAGYFRNHLPDAALGLFHR 73

Query: 96  MPEKNSVSWSAMISGY-IECGQL-DKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWA 153
           MP ++  S++A+I+G  +    L D A  L  +    SVV++T+++ GY++ G +     
Sbjct: 74  MPSRDLGSYNALIAGLSLRRHTLPDAAAALASIPLPPSVVSFTSLLRGYVRHGLL----- 128

Query: 154 EDGLKLLRMMIGLGIRPNASSLS-SVLLGCSHLSSLQLGK--QVHQLVFKSPLCKDTTAL 210
            D ++L   M      P  + ++ +VLLG      L  G+  +  +L  + P  KD  A 
Sbjct: 129 ADAIRLFHQM------PERNHVTYTVLLG----GFLDAGRVNEARKLFDEMP-DKDVVAR 177

Query: 211 TPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMK 270
           T ++S YC+ G + +A  LF E+ +++VV+W AMISGYAQ+GK   A +LF+ M D    
Sbjct: 178 TAMLSGYCQAGRITEARALFDEMPKRNVVSWTAMISGYAQNGKVILARKLFEVMPDR--- 234

Query: 271 PDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAA 307
            + +++ A+L+    AG V+     F++M  D+ +AA
Sbjct: 235 -NEVSWTAMLVGYIQAGHVEDAEDLFNAM-PDHPVAA 269


>gi|224124578|ref|XP_002330058.1| predicted protein [Populus trichocarpa]
 gi|222871483|gb|EEF08614.1| predicted protein [Populus trichocarpa]
          Length = 568

 Score =  471 bits (1213), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 247/552 (44%), Positives = 339/552 (61%), Gaps = 12/552 (2%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M    T++WN +++G+  Q G + +A+++FDK+P+ +VVS+  M+    +    +  A  
Sbjct: 20  MPETNTISWNGLVSGYV-QNGMISEARKVFDKMPERNVVSWTAMIRG-YVQEGLIEEAEL 77

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
            F R+P ++  SW  M+ G ++   + +AR LF  MP K+ V+ + MI G    G+L +A
Sbjct: 78  LFWRMPERNVVSWTVMLGGLIEDGRVDEARQLFDMMPVKDVVASTNMIDGLCSEGRLIEA 137

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFG--------YVENSWAEDGLKLLRMMIGLGIRPNA 172
            E+F   P ++VVAWT+MISG    G        Y    +  + L L  +M   G+RP+ 
Sbjct: 138 REIFDEMPQRNVVAWTSMISGEKDDGTWSTMIKIYERKGFELEALALFSLMQREGVRPSF 197

Query: 173 SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLE 232
            S+ SVL  C  L+SL  G+QVH  + +S    D    + LI+MY KCGDL  A ++F  
Sbjct: 198 PSVISVLSVCGSLASLDHGRQVHSQLVRSQFDIDIYVSSVLITMYIKCGDLVTAKRVFDR 257

Query: 233 IQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 292
              KD+V WN++I+GYAQHG GEKAL +F  M    + PD ITF+ +L AC++ G V  G
Sbjct: 258 FSSKDIVMWNSIIAGYAQHGFGEKALEVFHDMFSSSIAPDEITFIGVLSACSYTGKVKEG 317

Query: 293 IQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACR 352
           ++ F+SM + Y +  K +HY CMVDLLGRAGKL EA++LI+ MP +    ++G LL ACR
Sbjct: 318 LEIFESMKSKYQVDPKTEHYACMVDLLGRAGKLNEAMNLIENMPVEADAIVWGALLGACR 377

Query: 353 VHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPG 412
            HK LDLAE AA  L  L P N AG Y+ L+N+Y++  +W DV  +R +M+  N+ K PG
Sbjct: 378 THKNLDLAEIAAKKLLQLEP-NNAGPYILLSNLYSSQSRWKDVVELRKTMRAKNLRKSPG 436

Query: 413 YSWIEVGTVVHEFRSGDRV-HPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKE 471
            SWIEV   VH F  G    HPE   I +KL +L   ++ AGY PD  F +H V EE K 
Sbjct: 437 CSWIEVDKKVHIFSGGGSTSHPEHEMILKKLGKLGALLREAGYCPDGSFVMHDVDEEEKV 496

Query: 472 QLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRF 531
             L  HSEKLA+A+GL+KVP G PIRV KNLRVCGD H   K I+ +  REII+RDT RF
Sbjct: 497 HSLRDHSEKLAVAYGLLKVPEGMPIRVMKNLRVCGDSHSTIKLIAQVTGREIILRDTNRF 556

Query: 532 HHFKDGTCSCGD 543
           HHFKDG CSC D
Sbjct: 557 HHFKDGLCSCSD 568



 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 76/256 (29%), Positives = 122/256 (47%), Gaps = 57/256 (22%)

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQL 117
           A   F ++P  +T SWN ++SG+VQ   +++AR +F  MPE+N VSW+AMI GY++ G +
Sbjct: 13  ARKLFDKMPETNTISWNGLVSGYVQNGMISEARKVFDKMPERNVVSWTAMIRGYVQEGLI 72

Query: 118 DKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSS 177
           ++A  LF   P ++VV+WT M+ G ++ G V+                            
Sbjct: 73  EEAELLFWRMPERNVVSWTVMLGGLIEDGRVD---------------------------- 104

Query: 178 VLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKD 237
                          +  QL    P+ KD  A T +I   C  G L +A ++F E+ +++
Sbjct: 105 ---------------EARQLFDMMPV-KDVVASTNMIDGLCSEGRLIEAREIFDEMPQRN 148

Query: 238 VVTWNAMISG-------------YAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 284
           VV W +MISG             Y + G   +AL LF  M+ EG++P   + +++L  C 
Sbjct: 149 VVAWTSMISGEKDDGTWSTMIKIYERKGFELEALALFSLMQREGVRPSFPSVISVLSVCG 208

Query: 285 HAGLVDLGIQYFDSMV 300
               +D G Q    +V
Sbjct: 209 SLASLDHGRQVHSQLV 224


>gi|356530157|ref|XP_003533650.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Glycine max]
          Length = 711

 Score =  468 bits (1203), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 253/574 (44%), Positives = 341/574 (59%), Gaps = 34/574 (5%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLS--CILLNSDDVVAA 58
           M  K  V+W  +L G   Q G++ DA++LFD +P+ DVV+   M+   C     D+  A 
Sbjct: 143 MPHKNVVSWTVMLGGLL-QEGRVDDARKLFDMMPEKDVVAVTNMIGGYCEEGRLDEARAL 201

Query: 59  FDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLD 118
           FD    +P ++  +W  M+SG+ +   +  AR LF  MPE+N VSW+AM+ GY   G++ 
Sbjct: 202 FD---EMPKRNVVTWTAMVSGYARNGKVDVARKLFEVMPERNEVSWTAMLLGYTHSGRMR 258

Query: 119 KAVELFKVAPVKSVVAWTAMISGYMKFGYVE--------------NSWAE---------- 154
           +A  LF   PVK VV    MI G+   G V+               +W+           
Sbjct: 259 EASSLFDAMPVKPVVVCNEMIMGFGLNGEVDKARRVFKGMKERDNGTWSAMIKVYERKGY 318

Query: 155 --DGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTP 212
             + L L R M   G+  N  SL SVL  C  L+SL  GKQVH  + +S   +D    + 
Sbjct: 319 ELEALGLFRRMQREGLALNFPSLISVLSVCVSLASLDHGKQVHAQLVRSEFDQDLYVASV 378

Query: 213 LISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPD 272
           LI+MY KCG+L  A ++F     KDVV WN+MI+GY+QHG GE+AL +F  M   G+ PD
Sbjct: 379 LITMYVKCGNLVRAKQVFNRFPLKDVVMWNSMITGYSQHGLGEEALNVFHDMCSSGVPPD 438

Query: 273 SITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLI 332
            +TF+ +L AC+++G V  G++ F++M   Y +    +HY C+VDLLGRA ++ EA+ L+
Sbjct: 439 DVTFIGVLSACSYSGKVKEGLELFETMKCKYQVEPGIEHYACLVDLLGRADQVNEAMKLV 498

Query: 333 KKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKW 392
           +KMP +P   ++G LL ACR H +LDLAE A   L  L P N AG YV L+N+YA   +W
Sbjct: 499 EKMPMEPDAIVWGALLGACRTHMKLDLAEVAVEKLAQLEPKN-AGPYVLLSNMYAYKGRW 557

Query: 393 DDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGD-RVHPELVSIHEKLKELEKRMKL 451
            DV  +R  +K  +V K+PG SWIEV   VH F  GD + HPE   I + L++L   ++ 
Sbjct: 558 RDVEVLREKIKARSVTKLPGCSWIEVEKKVHMFTGGDSKGHPEQPIIMKMLEKLGGLLRE 617

Query: 452 AGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRA 511
           AGY PD  F LH V EE K   L +HSEKLA+A+GL+KVP G PIRV KNLRVCGDCH A
Sbjct: 618 AGYCPDGSFVLHDVDEEEKTHSLGYHSEKLAVAYGLLKVPEGMPIRVMKNLRVCGDCHSA 677

Query: 512 TKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
            K I+ +  REII+RD  RFHHFKDG CSC DYW
Sbjct: 678 IKLIAKVTGREIILRDANRFHHFKDGHCSCKDYW 711



 Score =  158 bits (400), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 103/340 (30%), Positives = 173/340 (50%), Gaps = 20/340 (5%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  + TV+WN +++G  K  G L +A+ +FD +P  +VVS+  M+   + N D V  A  
Sbjct: 81  MPQRNTVSWNGLISGHIKN-GMLSEARRVFDTMPDRNVVSWTSMVRGYVRNGD-VAEAER 138

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
            F  +P K+  SW  M+ G +Q+  +  AR LF  MPEK+ V+ + MI GY E G+LD+A
Sbjct: 139 LFWHMPHKNVVSWTVMLGGLLQEGRVDDARKLFDMMPEKDVVAVTNMIGGYCEEGRLDEA 198

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLL 180
             LF   P ++VV WTAM+SGY + G V+         + R +  +    N  S +++LL
Sbjct: 199 RALFDEMPKRNVVTWTAMVSGYARNGKVD---------VARKLFEVMPERNEVSWTAMLL 249

Query: 181 GCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVT 240
           G +H   ++        +F +   K       +I  +   G+++ A ++F  ++ +D  T
Sbjct: 250 GYTHSGRMREASS----LFDAMPVKPVVVCNEMIMGFGLNGEVDKARRVFKGMKERDNGT 305

Query: 241 WNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV 300
           W+AMI  Y + G   +AL LF +M+ EG+  +  + +++L  C     +D G Q    +V
Sbjct: 306 WSAMIKVYERKGYELEALGLFRRMQREGLALNFPSLISVLSVCVSLASLDHGKQVHAQLV 365

Query: 301 NDYGIAAKPDHY--TCMVDLLGRAGKLVEAVDLIKKMPFK 338
                    D Y  + ++ +  + G LV A  +  + P K
Sbjct: 366 RS---EFDQDLYVASVLITMYVKCGNLVRAKQVFNRFPLK 402



 Score =  155 bits (391), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 106/381 (27%), Positives = 188/381 (49%), Gaps = 78/381 (20%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQP--DVVSYNIMLSCILLNSDDVVAA 58
           + ++ T + +  +A +A+  G+L  A+++FD+ P P   V S+N M++     +     A
Sbjct: 17  VRLQCTTSSSYAIACYARN-GQLDHARKVFDETPLPHRTVSSWNAMVAA-YFEARQPREA 74

Query: 59  FDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLD 118
              F+++P ++T SWN +ISG ++   +++AR +F  MP++N VSW++M+ GY+  G + 
Sbjct: 75  LLLFEKMPQRNTVSWNGLISGHIKNGMLSEARRVFDTMPDRNVVSWTSMVRGYVRNGDVA 134

Query: 119 KAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSV 178
           +A  LF   P K+VV+WT M+ G ++ G V     +D  KL  MM      P        
Sbjct: 135 EAERLFWHMPHKNVVSWTVMLGGLLQEGRV-----DDARKLFDMM------PE------- 176

Query: 179 LLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDV 238
                                     KD  A+T +I  YC+ G L++A  LF E+ +++V
Sbjct: 177 --------------------------KDVVAVTNMIGGYCEEGRLDEARALFDEMPKRNV 210

Query: 239 VTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDS 298
           VTW AM+SGYA++GK + A +LF+ M +     + +++ A+LL   H+G +      FD+
Sbjct: 211 VTWTAMVSGYARNGKVDVARKLFEVMPER----NEVSWTAMLLGYTHSGRMREASSLFDA 266

Query: 299 -----------MVNDYGIAAKPDH---------------YTCMVDLLGRAGKLVEAVDLI 332
                      M+  +G+  + D                ++ M+ +  R G  +EA+ L 
Sbjct: 267 MPVKPVVVCNEMIMGFGLNGEVDKARRVFKGMKERDNGTWSAMIKVYERKGYELEALGLF 326

Query: 333 KKMPFKPQPAIFGTLLSACRV 353
           ++M  +     F +L+S   V
Sbjct: 327 RRMQREGLALNFPSLISVLSV 347


>gi|224141765|ref|XP_002324235.1| predicted protein [Populus trichocarpa]
 gi|222865669|gb|EEF02800.1| predicted protein [Populus trichocarpa]
          Length = 736

 Score =  463 bits (1191), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 254/578 (43%), Positives = 342/578 (59%), Gaps = 49/578 (8%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
           ++ L     Q G+L +A+ +FDK    D VS+  +++    +   +  A + F  +P++D
Sbjct: 166 HTSLINMYAQNGELVNARLVFDKSSMRDAVSFTALITG-YASKGFLDEARELFDEIPVRD 224

Query: 70  TASWNTMISGFVQKKNMAKARDLFLAM------PEKNSV--------------------- 102
             SWN MISG+ Q   + +A   F  M      P  +++                     
Sbjct: 225 VVSWNAMISGYAQSGRVEEAMAFFEEMRRAKVTPNVSTMLSVLSACAQSGSSLQLGNWVR 284

Query: 103 SW-------------SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVE 149
           SW             + +I  Y++CG L++A  LF+    K+VV+W  MI GY       
Sbjct: 285 SWIEDRGLGSNIRLVNGLIDMYVKCGDLEEASNLFEKIQDKNVVSWNVMIGGYTHM---- 340

Query: 150 NSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKS-PLCKDTT 208
            S  ++ L L R M+   I PN  +  S+L  C++L +L LGK VH  V K+    K+T 
Sbjct: 341 -SCYKEALGLFRRMMQSNIDPNDVTFLSILPACANLGALDLGKWVHAYVDKNMKSMKNTV 399

Query: 209 AL-TPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE 267
           AL T LI MY KCGDL  A ++F  +  K + TWNAMISG+A HG  + AL LF +M  E
Sbjct: 400 ALWTSLIDMYAKCGDLAVAKRIFDCMNTKSLATWNAMISGFAMHGHTDTALGLFSRMTSE 459

Query: 268 GMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVE 327
           G  PD ITFV +L AC HAGL+ LG +YF SM+ DY ++ K  HY CM+DL GRAG   E
Sbjct: 460 GFVPDDITFVGVLTACKHAGLLSLGRRYFSSMIQDYKVSPKLPHYGCMIDLFGRAGLFDE 519

Query: 328 AVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYA 387
           A  L+K M  KP  AI+ +LL ACR+H+R++LAE  A +LF L P N +  YV L+NIYA
Sbjct: 520 AETLVKNMEMKPDGAIWCSLLGACRIHRRIELAESVAKHLFELEPENPSA-YVLLSNIYA 578

Query: 388 AMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEK 447
              +W+DVA+IR  + +N + K+PG S IEV +VVHEF  GD+VHP+   I++ L E++ 
Sbjct: 579 GAGRWEDVAKIRTRLNDNRMKKVPGCSSIEVDSVVHEFLVGDKVHPQSNEIYKMLDEIDM 638

Query: 448 RMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGD 507
           R++ AG+VPD    L+ + EE KE +L  HSEKLAIAFGLI    GT IR+ KNLRVCG+
Sbjct: 639 RLEKAGFVPDTSEVLYDMDEEWKEGVLSHHSEKLAIAFGLISTKPGTTIRIMKNLRVCGN 698

Query: 508 CHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           CH ATK IS I  REII RD  RFHHFKDG+CSC DYW
Sbjct: 699 CHSATKLISKIFNREIIARDRNRFHHFKDGSCSCKDYW 736



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 76/253 (30%), Positives = 118/253 (46%), Gaps = 38/253 (15%)

Query: 115 GQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASS 174
           G L  A+ LFK     + V W  MI G       E+ +    L+    MI  G  PN  +
Sbjct: 76  GDLSYALSLFKTIRNPNHVIWNHMIRG---LSSSESPFL--ALEYYVHMISSGTEPNEYT 130

Query: 175 LSSVLLGCSHLSSLQLGKQVH-------------------------------QLVFKSPL 203
             S+   C+ +     GKQVH                               +LVF    
Sbjct: 131 FPSIFKSCTKIRGAHEGKQVHAHVLKLGLEHNAFVHTSLINMYAQNGELVNARLVFDKSS 190

Query: 204 CKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDK 263
            +D  + T LI+ Y   G L++A +LF EI  +DVV+WNAMISGYAQ G+ E+A+  F++
Sbjct: 191 MRDAVSFTALITGYASKGFLDEARELFDEIPVRDVVSWNAMISGYAQSGRVEEAMAFFEE 250

Query: 264 MKDEGMKPDSITFVALLLACNHAG-LVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRA 322
           M+   + P+  T +++L AC  +G  + LG  +  S + D G+ +       ++D+  + 
Sbjct: 251 MRRAKVTPNVSTMLSVLSACAQSGSSLQLG-NWVRSWIEDRGLGSNIRLVNGLIDMYVKC 309

Query: 323 GKLVEAVDLIKKM 335
           G L EA +L +K+
Sbjct: 310 GDLEEASNLFEKI 322


>gi|357506719|ref|XP_003623648.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498663|gb|AES79866.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 707

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 247/577 (42%), Positives = 345/577 (59%), Gaps = 41/577 (7%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLS--CILLNSDDVVAA 58
           M  +  V+W  ++ G  K+  ++ DA++LFD IP+ DVV    M+   C +   D+   A
Sbjct: 140 MPRRNVVSWTVMIGGLLKE-SRIDDAKKLFDMIPEKDVVVVTNMIGGYCQVGRLDE---A 195

Query: 59  FDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLD 118
            + F  + +++  +W TM+SG+ +   +  AR LF  MPE+N VSW+AM+ GY + G++ 
Sbjct: 196 RELFDEMKVRNVFTWTTMVSGYAKNGRVDVARKLFEVMPERNEVSWTAMLMGYTQSGRMK 255

Query: 119 KAVELFKVAPVKSVVAWTAMISGYMKFGYV-----------------ENSWAE------- 154
           +A ELF+  PVK +VA   MI   ++FG                   E +W         
Sbjct: 256 EAFELFEAMPVKWIVACNEMI---LQFGLAGEMHRARMMFEGMKERDEGTWNAMIKVFER 312

Query: 155 -----DGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTA 209
                + L L   M   G+  N  S+ SVL  C+ L+SL  G+QVH  + +S   +D   
Sbjct: 313 KGLDLEALGLFARMQREGVALNFPSMISVLSVCASLASLDHGRQVHARLVRSEFDQDLYV 372

Query: 210 LTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGM 269
            + LI+MY KCGDL  A  +F     KDVV WN+MI+GY+QHG GE+AL +F  M   G+
Sbjct: 373 ASVLITMYVKCGDLVRAKGIFNRFLFKDVVMWNSMITGYSQHGLGEEALNVFHDMCSSGV 432

Query: 270 KPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAV 329
           +PD +TF+ +L AC+++G V  G + F++M   Y +    +HY CMVDLLGRAG++ EA+
Sbjct: 433 QPDEVTFIGVLSACSYSGKVKEGFEIFEAMKCTYQVEPGIEHYACMVDLLGRAGRVDEAM 492

Query: 330 DLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAM 389
           +L++KMP +P   ++G LL ACR H +LDLAE A   L  L P N AG YV L+++YA  
Sbjct: 493 ELVEKMPMEPDAIVWGALLGACRNHMKLDLAEVAVEKLAKLEPKN-AGPYVLLSHMYATK 551

Query: 390 KKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGD-RVHPELVSIHEKLKELEKR 448
            +W DV  +R  +    V+K PG SWIEV   VH F  GD + HPE   I + L++L   
Sbjct: 552 GRWRDVEVLRKKIN-RRVIKFPGCSWIEVEKKVHMFTGGDSKSHPEQHMITQMLEKLSGF 610

Query: 449 MKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDC 508
           ++ AGY PD  F LH V EE K   L +HSE+LA+A+GL+KVP G PIRV KNLRVCGDC
Sbjct: 611 LREAGYCPDGSFVLHDVDEEEKTHSLGYHSERLAVAYGLLKVPEGMPIRVMKNLRVCGDC 670

Query: 509 HRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           H A K I+ +  REII+RD  RFHHFKDG+CSC D+W
Sbjct: 671 HSAIKLIAKVTGREIILRDANRFHHFKDGSCSCKDFW 707



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 100/350 (28%), Positives = 176/350 (50%), Gaps = 61/350 (17%)

Query: 21  GKLKDAQELFDKIPQPD--VVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMIS 78
           G + +A+++FD  P P   + S+N M+S     S     A   F ++P ++T S+N MIS
Sbjct: 33  GDIHNARKVFDNTPLPQRTIASWNAMVSA-YFESHKPRDALLLFDQMPQRNTVSFNGMIS 91

Query: 79  GFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAM 138
           G+V+   +A AR +F  MPE+N VSW++M+ GY++ G +++A +LF   P ++VV+WT M
Sbjct: 92  GYVKNGMVADARKVFDVMPERNVVSWTSMVRGYVQEGMVEEAEKLFWEMPRRNVVSWTVM 151

Query: 139 ISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLV 198
           I G +K      S  +D  KL  M+      P                            
Sbjct: 152 IGGLLK-----ESRIDDAKKLFDMI------PE--------------------------- 173

Query: 199 FKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKAL 258
                 KD   +T +I  YC+ G L++A +LF E++ ++V TW  M+SGYA++G+ + A 
Sbjct: 174 ------KDVVVVTNMIGGYCQVGRLDEARELFDEMKVRNVFTWTTMVSGYAKNGRVDVAR 227

Query: 259 RLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDL 318
           +LF+ M +     + +++ A+L+    +G +    + F++M   + +A        M+  
Sbjct: 228 KLFEVMPER----NEVSWTAMLMGYTQSGRMKEAFELFEAMPVKWIVACNE-----MILQ 278

Query: 319 LGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLF 368
            G AG++  A  + + M  + +    GT  +  +V +R  L +  A+ LF
Sbjct: 279 FGLAGEMHRARMMFEGMKERDE----GTWNAMIKVFERKGL-DLEALGLF 323



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 97/340 (28%), Positives = 173/340 (50%), Gaps = 20/340 (5%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  + TV++N +++G+ K  G + DA+++FD +P+ +VVS+  M+    +    V  A  
Sbjct: 78  MPQRNTVSFNGMISGYVKN-GMVADARKVFDVMPERNVVSWTSMVRG-YVQEGMVEEAEK 135

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
            F  +P ++  SW  MI G +++  +  A+ LF  +PEK+ V  + MI GY + G+LD+A
Sbjct: 136 LFWEMPRRNVVSWTVMIGGLLKESRIDDAKKLFDMIPEKDVVVVTNMIGGYCQVGRLDEA 195

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLL 180
            ELF    V++V  WT M+SGY K G V+         + R +  +    N  S +++L+
Sbjct: 196 RELFDEMKVRNVFTWTTMVSGYAKNGRVD---------VARKLFEVMPERNEVSWTAMLM 246

Query: 181 GCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVT 240
           G +    +   K+  +L F++   K   A   +I  +   G++  A  +F  ++ +D  T
Sbjct: 247 GYTQSGRM---KEAFEL-FEAMPVKWIVACNEMILQFGLAGEMHRARMMFEGMKERDEGT 302

Query: 241 WNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV 300
           WNAMI  + + G   +AL LF +M+ EG+  +  + +++L  C     +D G Q    +V
Sbjct: 303 WNAMIKVFERKGLDLEALGLFARMQREGVALNFPSMISVLSVCASLASLDHGRQVHARLV 362

Query: 301 NDYGIAAKPDHY--TCMVDLLGRAGKLVEAVDLIKKMPFK 338
                    D Y  + ++ +  + G LV A  +  +  FK
Sbjct: 363 RS---EFDQDLYVASVLITMYVKCGDLVRAKGIFNRFLFK 399



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 65/267 (24%), Positives = 114/267 (42%), Gaps = 36/267 (13%)

Query: 196 QLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF--LEIQRKDVVTWNAMISGYAQHGK 253
           ++V    LC +T+A    IS Y + GD+ +A K+F    + ++ + +WNAM+S Y +  K
Sbjct: 12  RMVQARSLCSNTSA----ISRYGRIGDIHNARKVFDNTPLPQRTIASWNAMVSAYFESHK 67

Query: 254 GEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYT 313
              AL LFD+M     + ++++F  ++      G+V    + FD M     ++     +T
Sbjct: 68  PRDALLLFDQMP----QRNTVSFNGMISGYVKNGMVADARKVFDVMPERNVVS-----WT 118

Query: 314 CMVDLLGRAGKLVEAVDLIKKMPFK---PQPAIFGTLLSACRVHKRLDLAEFAAMNLFNL 370
            MV    + G + EA  L  +MP +       + G LL   R+          A  LF++
Sbjct: 119 SMVRGYVQEGMVEEAEKLFWEMPRRNVVSWTVMIGGLLKESRIDD--------AKKLFDM 170

Query: 371 NPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDR 430
            P         +   Y  + + D+   +   MK  NV     ++W    T+V  +    R
Sbjct: 171 IPEKDVVVVTNMIGGYCQVGRLDEARELFDEMKVRNV-----FTWT---TMVSGYAKNGR 222

Query: 431 VH--PELVSIHEKLKELEKRMKLAGYV 455
           V    +L  +  +  E+     L GY 
Sbjct: 223 VDVARKLFEVMPERNEVSWTAMLMGYT 249


>gi|15223594|ref|NP_176062.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75173061|sp|Q9FXB9.1|PPR84_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g56690, mitochondrial; Flags: Precursor
 gi|9954744|gb|AAG09095.1|AC009323_6 Hypothetical protein [Arabidopsis thaliana]
 gi|332195302|gb|AEE33423.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 704

 Score =  461 bits (1186), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 240/572 (41%), Positives = 339/572 (59%), Gaps = 30/572 (5%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  +  V+W  +  G     G++  A++L+D +P  DVV+   M+   L     V  A  
Sbjct: 136 MPERNEVSWTVMFGGLIDD-GRIDKARKLYDMMPVKDVVASTNMIGG-LCREGRVDEARL 193

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
            F  +  ++  +W TMI+G+ Q   +  AR LF  MPEK  VSW++M+ GY   G+++ A
Sbjct: 194 IFDEMRERNVVTWTTMITGYRQNNRVDVARKLFEVMPEKTEVSWTSMLLGYTLSGRIEDA 253

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFG--------------------------YVENSWAE 154
            E F+V P+K V+A  AMI G+ + G                          Y    +  
Sbjct: 254 EEFFEVMPMKPVIACNAMIVGFGEVGEISKARRVFDLMEDRDNATWRGMIKAYERKGFEL 313

Query: 155 DGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLI 214
           + L L   M   G+RP+  SL S+L  C+ L+SLQ G+QVH  + +     D    + L+
Sbjct: 314 EALDLFAQMQKQGVRPSFPSLISILSVCATLASLQYGRQVHAHLVRCQFDDDVYVASVLM 373

Query: 215 SMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSI 274
           +MY KCG+L  A  +F     KD++ WN++ISGYA HG GE+AL++F +M   G  P+ +
Sbjct: 374 TMYVKCGELVKAKLVFDRFSSKDIIMWNSIISGYASHGLGEEALKIFHEMPSSGTMPNKV 433

Query: 275 TFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKK 334
           T +A+L AC++AG ++ G++ F+SM + + +    +HY+C VD+LGRAG++ +A++LI+ 
Sbjct: 434 TLIAILTACSYAGKLEEGLEIFESMESKFCVTPTVEHYSCTVDMLGRAGQVDKAMELIES 493

Query: 335 MPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDD 394
           M  KP   ++G LL AC+ H RLDLAE AA  LF   P N AG YV L++I A+  KW D
Sbjct: 494 MTIKPDATVWGALLGACKTHSRLDLAEVAAKKLFENEPDN-AGTYVLLSSINASRSKWGD 552

Query: 395 VARIRLSMKENNVVKMPGYSWIEVGTVVHEF-RSGDRVHPELVSIHEKLKELEKRMKLAG 453
           VA +R +M+ NNV K PG SWIEVG  VH F R G + HPE   I   L++ +  ++ AG
Sbjct: 553 VAVVRKNMRTNNVSKFPGCSWIEVGKKVHMFTRGGIKNHPEQAMILMMLEKTDGLLREAG 612

Query: 454 YVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATK 513
           Y PD    LH V EE K   L  HSE+LA+A+GL+K+P G PIRV KNLRVCGDCH A K
Sbjct: 613 YSPDCSHVLHDVDEEEKVDSLSRHSERLAVAYGLLKLPEGVPIRVMKNLRVCGDCHAAIK 672

Query: 514 YISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
            IS + +REII+RD  RFHHF +G CSC DYW
Sbjct: 673 LISKVTEREIILRDANRFHHFNNGECSCRDYW 704



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 92/328 (28%), Positives = 168/328 (51%), Gaps = 40/328 (12%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           +  K   +WNS+++G+    G  K+A++LFD++ + +VVS+N ++S  + N   +V A +
Sbjct: 43  LQFKAIGSWNSIVSGYFSN-GLPKEARQLFDEMSERNVVSWNGLVSGYIKNRM-IVEARN 100

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
            F+ +P ++  SW  M+ G++Q+  + +A  LF  MPE+N VSW+ M  G I+ G++DKA
Sbjct: 101 VFELMPERNVVSWTAMVKGYMQEGMVGEAESLFWRMPERNEVSWTVMFGGLIDDGRIDKA 160

Query: 121 VELFKVAPVKSVVAWTAMISGY--------------------------MKFGYVENSWAE 154
            +L+ + PVK VVA T MI G                           M  GY +N+  +
Sbjct: 161 RKLYDMMPVKDVVASTNMIGGLCREGRVDEARLIFDEMRERNVVTWTTMITGYRQNNRVD 220

Query: 155 DGLKLLRMMIGLGIRPNASSLS--SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTP 212
              KL  +M      P  + +S  S+LLG +    ++  ++  +++   P+     A   
Sbjct: 221 VARKLFEVM------PEKTEVSWTSMLLGYTLSGRIEDAEEFFEVMPMKPV----IACNA 270

Query: 213 LISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPD 272
           +I  + + G++  A ++F  ++ +D  TW  MI  Y + G   +AL LF +M+ +G++P 
Sbjct: 271 MIVGFGEVGEISKARRVFDLMEDRDNATWRGMIKAYERKGFELEALDLFAQMQKQGVRPS 330

Query: 273 SITFVALLLACNHAGLVDLGIQYFDSMV 300
             + +++L  C     +  G Q    +V
Sbjct: 331 FPSLISILSVCATLASLQYGRQVHAHLV 358



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 89/317 (28%), Positives = 158/317 (49%), Gaps = 23/317 (7%)

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQL 117
           A  FF  L  K   SWN+++SG+       +AR LF  M E+N VSW+ ++SGYI+   +
Sbjct: 36  ARKFFDSLQFKAIGSWNSIVSGYFSNGLPKEARQLFDEMSERNVVSWNGLVSGYIKNRMI 95

Query: 118 DKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSS 177
            +A  +F++ P ++VV+WTAM+ GYM+ G V     E      RM       P  + +S 
Sbjct: 96  VEARNVFELMPERNVVSWTAMVKGYMQEGMV----GEAESLFWRM-------PERNEVSW 144

Query: 178 VLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKD 237
            ++    +   ++ K   +L    P+ KD  A T +I   C+ G +++A  +F E++ ++
Sbjct: 145 TVMFGGLIDDGRIDK-ARKLYDMMPV-KDVVASTNMIGGLCREGRVDEARLIFDEMRERN 202

Query: 238 VVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFD 297
           VVTW  MI+GY Q+ + + A +LF+ M ++      +++ ++LL    +G ++   ++F+
Sbjct: 203 VVTWTTMITGYRQNNRVDVARKLFEVMPEK----TEVSWTSMLLGYTLSGRIEDAEEFFE 258

Query: 298 SMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRL 357
            M     IA        M+   G  G++ +A  +   M  +      G + +  R    L
Sbjct: 259 VMPMKPVIAC-----NAMIVGFGEVGEISKARRVFDLMEDRDNATWRGMIKAYERKGFEL 313

Query: 358 D-LAEFAAMNLFNLNPA 373
           + L  FA M    + P+
Sbjct: 314 EALDLFAQMQKQGVRPS 330



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 57/292 (19%), Positives = 120/292 (41%), Gaps = 49/292 (16%)

Query: 102 VSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMK----------------- 144
           V+ S  IS     G++++A + F     K++ +W +++SGY                   
Sbjct: 18  VNCSFEISRLSRIGKINEARKFFDSLQFKAIGSWNSIVSGYFSNGLPKEARQLFDEMSER 77

Query: 145 ---------FGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVH 195
                     GY++N    +   +  +M      P  + +S   +   ++    +G +  
Sbjct: 78  NVVSWNGLVSGYIKNRMIVEARNVFELM------PERNVVSWTAMVKGYMQEGMVG-EAE 130

Query: 196 QLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGE 255
            L ++ P  ++  + T +       G ++ A KL+  +  KDVV    MI G  + G+ +
Sbjct: 131 SLFWRMPE-RNEVSWTVMFGGLIDDGRIDKARKLYDMMPVKDVVASTNMIGGLCREGRVD 189

Query: 256 KALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCM 315
           +A  +FD+M++  +    +T+  ++        VD+  + F+ M     ++     +T M
Sbjct: 190 EARLIFDEMRERNV----VTWTTMITGYRQNNRVDVARKLFEVMPEKTEVS-----WTSM 240

Query: 316 VDLLGRAGKLVEAVDLIKKMPFKPQPAI------FGTLLSACRVHKRLDLAE 361
           +     +G++ +A +  + MP KP  A       FG +    +  +  DL E
Sbjct: 241 LLGYTLSGRIEDAEEFFEVMPMKPVIACNAMIVGFGEVGEISKARRVFDLME 292



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 51/221 (23%), Positives = 97/221 (43%), Gaps = 28/221 (12%)

Query: 214 ISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDS 273
           IS   + G + +A K F  +Q K + +WN+++SGY  +G  ++A +LFD+M +  +    
Sbjct: 24  ISRLSRIGKINEARKFFDSLQFKAIGSWNSIVSGYFSNGLPKEARQLFDEMSERNV---- 79

Query: 274 ITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIK 333
           +++  L+       ++      F+ M     ++     +T MV    + G + EA  L  
Sbjct: 80  VSWNGLVSGYIKNRMIVEARNVFELMPERNVVS-----WTAMVKGYMQEGMVGEAESLFW 134

Query: 334 KMPFKPQ---PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMK 390
           +MP + +     +FG L+   R+ K        A  L+++ P         +        
Sbjct: 135 RMPERNEVSWTVMFGGLIDDGRIDK--------ARKLYDMMPVKDVVASTNMIGGLCREG 186

Query: 391 KWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRV 431
           + D+   I   M+E NVV     +W    T++  +R  +RV
Sbjct: 187 RVDEARLIFDEMRERNVV-----TWT---TMITGYRQNNRV 219


>gi|15217508|ref|NP_172412.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806401|sp|Q56XI1.2|PPR25_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09410
 gi|3482916|gb|AAC33201.1| Hypothetical protein [Arabidopsis thaliana]
 gi|91805759|gb|ABE65608.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332190317|gb|AEE28438.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 705

 Score =  461 bits (1185), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 241/573 (42%), Positives = 345/573 (60%), Gaps = 31/573 (5%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  K  V+W  +L GF  Q G++ DA +L++ IP  D ++   M+   L     V  A +
Sbjct: 136 MPEKNKVSWTVMLIGFL-QDGRIDDACKLYEMIPDKDNIARTSMIHG-LCKEGRVDEARE 193

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
            F  +  +   +W TM++G+ Q   +  AR +F  MPEK  VSW++M+ GY++ G+++ A
Sbjct: 194 IFDEMSERSVITWTTMVTGYGQNNRVDDARKIFDVMPEKTEVSWTSMLMGYVQNGRIEDA 253

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGYV--------------------------ENSWAE 154
            ELF+V PVK V+A  AMISG  + G +                           N +  
Sbjct: 254 EELFEVMPVKPVIACNAMISGLGQKGEIAKARRVFDSMKERNDASWQTVIKIHERNGFEL 313

Query: 155 DGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLI 214
           + L L  +M   G+RP   +L S+L  C+ L+SL  GKQVH  + +     D    + L+
Sbjct: 314 EALDLFILMQKQGVRPTFPTLISILSVCASLASLHHGKQVHAQLVRCQFDVDVYVASVLM 373

Query: 215 SMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEG-MKPDS 273
           +MY KCG+L  +  +F     KD++ WN++ISGYA HG GE+AL++F +M   G  KP+ 
Sbjct: 374 TMYIKCGELVKSKLIFDRFPSKDIIMWNSIISGYASHGLGEEALKVFCEMPLSGSTKPNE 433

Query: 274 ITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIK 333
           +TFVA L AC++AG+V+ G++ ++SM + +G+     HY CMVD+LGRAG+  EA+++I 
Sbjct: 434 VTFVATLSACSYAGMVEEGLKIYESMESVFGVKPITAHYACMVDMLGRAGRFNEAMEMID 493

Query: 334 KMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWD 393
            M  +P  A++G+LL ACR H +LD+AEF A  L  + P N+ G Y+ L+N+YA+  +W 
Sbjct: 494 SMTVEPDAAVWGSLLGACRTHSQLDVAEFCAKKLIEIEPENS-GTYILLSNMYASQGRWA 552

Query: 394 DVARIRLSMKENNVVKMPGYSWIEVGTVVHEF-RSGDRVHPELVSIHEKLKELEKRMKLA 452
           DVA +R  MK   V K PG SW EV   VH F R G   HPE  SI + L EL+  ++ A
Sbjct: 553 DVAELRKLMKTRLVRKSPGCSWTEVENKVHAFTRGGINSHPEQESILKILDELDGLLREA 612

Query: 453 GYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRAT 512
           GY PD  +ALH V EE K   L +HSE+LA+A+ L+K+  G PIRV KNLRVC DCH A 
Sbjct: 613 GYNPDCSYALHDVDEEEKVNSLKYHSERLAVAYALLKLSEGIPIRVMKNLRVCSDCHTAI 672

Query: 513 KYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           K IS +++REII+RD  RFHHF++G CSC DYW
Sbjct: 673 KIISKVKEREIILRDANRFHHFRNGECSCKDYW 705



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 93/352 (26%), Positives = 172/352 (48%), Gaps = 63/352 (17%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLN--SDDVVAAFDFFQRLPIKDTASWNTMIS 78
           GK+ +A++LFD      + S+N M++    N    D   A   F  +P ++  SWN ++S
Sbjct: 31  GKIHEARKLFDSCDSKSISSWNSMVAGYFANLMPRD---ARKLFDEMPDRNIISWNGLVS 87

Query: 79  GFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAM 138
           G+++   + +AR +F  MPE+N VSW+A++ GY+  G++D A  LF   P K+ V+WT M
Sbjct: 88  GYMKNGEIDEARKVFDLMPERNVVSWTALVKGYVHNGKVDVAESLFWKMPEKNKVSWTVM 147

Query: 139 ISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLV 198
           + G+++ G +     +D  KL  M+      P+                           
Sbjct: 148 LIGFLQDGRI-----DDACKLYEMI------PD--------------------------- 169

Query: 199 FKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKAL 258
                 KD  A T +I   CK G +++A ++F E+  + V+TW  M++GY Q+ + + A 
Sbjct: 170 ------KDNIARTSMIHGLCKEGRVDEAREIFDEMSERSVITWTTMVTGYGQNNRVDDAR 223

Query: 259 RLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDL 318
           ++FD M ++      +++ ++L+     G ++   + F+ M     IA        M+  
Sbjct: 224 KIFDVMPEK----TEVSWTSMLMGYVQNGRIEDAEELFEVMPVKPVIAC-----NAMISG 274

Query: 319 LGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNL 370
           LG+ G++ +A  +   M  +   A + T++   ++H+R    E  A++LF L
Sbjct: 275 LGQKGEIAKARRVFDSMKER-NDASWQTVI---KIHERNGF-ELEALDLFIL 321



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 67/266 (25%), Positives = 130/266 (48%), Gaps = 22/266 (8%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVV 133
           N  I+   +   + +AR LF +   K+  SW++M++GY        A +LF   P ++++
Sbjct: 21  NVRITHLSRIGKIHEARKLFDSCDSKSISSWNSMVAGYFANLMPRDARKLFDEMPDRNII 80

Query: 134 AWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ 193
           +W  ++SGYMK G ++ +         R +  L    N  S ++++ G  H   + + + 
Sbjct: 81  SWNGLVSGYMKNGEIDEA---------RKVFDLMPERNVVSWTALVKGYVHNGKVDVAE- 130

Query: 194 VHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGK 253
              L +K P  K+  + T ++  + + G ++DACKL+  I  KD +   +MI G  + G+
Sbjct: 131 --SLFWKMPE-KNKVSWTVMLIGFLQDGRIDDACKLYEMIPDKDNIARTSMIHGLCKEGR 187

Query: 254 GEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYT 313
            ++A  +FD+M +  +    IT+  ++        VD   + FD M     ++     +T
Sbjct: 188 VDEAREIFDEMSERSV----ITWTTMVTGYGQNNRVDDARKIFDVMPEKTEVS-----WT 238

Query: 314 CMVDLLGRAGKLVEAVDLIKKMPFKP 339
            M+    + G++ +A +L + MP KP
Sbjct: 239 SMLMGYVQNGRIEDAEELFEVMPVKP 264


>gi|148909481|gb|ABR17838.1| unknown [Picea sitchensis]
          Length = 795

 Score =  460 bits (1183), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 241/533 (45%), Positives = 327/533 (61%), Gaps = 15/533 (2%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWN-TMISG 79
           G +  A +LF+++P  DV S+N ++    LNS     A  FF R+ ++     + TM+S 
Sbjct: 270 GNVNTAHKLFERMPIRDVASWNAIIGGYSLNSQHH-EALAFFNRMQVRGIKPNSITMVSV 328

Query: 80  -------FVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSV 132
                  F  ++          +  E N V  +A+++ Y +CG ++ A +LF+  P K+V
Sbjct: 329 LPACAHLFALEQGQQIHGYAIRSGFESNDVVGNALVNMYAKCGNVNSAYKLFERMPKKNV 388

Query: 133 VAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGK 192
           VAW A+ISGY + G+       + L L   M   GI+P++ ++ SVL  C+H  +L+ GK
Sbjct: 389 VAWNAIISGYSQHGH-----PHEALALFIEMQAQGIKPDSFAIVSVLPACAHFLALEQGK 443

Query: 193 QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHG 252
           Q+H    +S    +    T L+ +Y KCG++  A KLF  +  +DVV+W  MI  Y  HG
Sbjct: 444 QIHGYTIRSGFESNVVVGTGLVDIYAKCGNVNTAQKLFERMPEQDVVSWTTMILAYGIHG 503

Query: 253 KGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY 312
            GE AL LF KM++ G K D I F A+L AC+HAGLVD G+QYF  M +DYG+A K +HY
Sbjct: 504 HGEDALALFSKMQETGTKLDHIAFTAILTACSHAGLVDQGLQYFQCMKSDYGLAPKLEHY 563

Query: 313 TCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNP 372
            C+VDLLGRAG L EA  +IK M  +P   ++G LL ACR+H  ++L E AA +LF L+P
Sbjct: 564 ACLVDLLGRAGHLDEANGIIKNMSLEPDANVWGALLGACRIHCNIELGEQAAKHLFELDP 623

Query: 373 ANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVH 432
            N AG YV L+NIYA  ++W+DVA++R  MKE  V K PG S + V   V  F  GDR H
Sbjct: 624 DN-AGYYVLLSNIYAEAQRWEDVAKLRKMMKEKGVKKQPGCSVVAVHRDVQTFLVGDRTH 682

Query: 433 PELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPL 492
           P+   I+  L+ L ++M+ AGYVP+   AL  V EE KE +L  HSEKLAI+FG+I    
Sbjct: 683 PQSEQIYAMLEILYEQMRKAGYVPNTNLALQDVEEEAKENILSSHSEKLAISFGIINTSP 742

Query: 493 GTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           G PIR+ KNLRVC DCH ATK+IS I  REIIVRD  RFHH K+G CSCGDYW
Sbjct: 743 GIPIRIMKNLRVCSDCHNATKFISKIVGREIIVRDANRFHHVKNGFCSCGDYW 795



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 108/342 (31%), Positives = 179/342 (52%), Gaps = 31/342 (9%)

Query: 11  SVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSD--DVVAAFDFFQRLPIK 68
           + LA    + G L++A+++FD++P+ DVVS+N +++    N    + +A F   Q   IK
Sbjct: 159 TALASMYTKCGSLENARQVFDRMPKRDVVSWNAIIAGYSQNGQPYEALALFSEMQVNGIK 218

Query: 69  DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISG--------------YIEC 114
             +S  T++S       +       LA+ +   +   A+ SG              Y +C
Sbjct: 219 PNSS--TLVS-------VMPVCAHLLALEQGKQIHCYAIRSGIESDVLVVNGLVNMYAKC 269

Query: 115 GQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASS 174
           G ++ A +LF+  P++ V +W A+I GY       NS   + L     M   GI+PN+ +
Sbjct: 270 GNVNTAHKLFERMPIRDVASWNAIIGGYSL-----NSQHHEALAFFNRMQVRGIKPNSIT 324

Query: 175 LSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ 234
           + SVL  C+HL +L+ G+Q+H    +S    +      L++MY KCG++  A KLF  + 
Sbjct: 325 MVSVLPACAHLFALEQGQQIHGYAIRSGFESNDVVGNALVNMYAKCGNVNSAYKLFERMP 384

Query: 235 RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ 294
           +K+VV WNA+ISGY+QHG   +AL LF +M+ +G+KPDS   V++L AC H   ++ G Q
Sbjct: 385 KKNVVAWNAIISGYSQHGHPHEALALFIEMQAQGIKPDSFAIVSVLPACAHFLALEQGKQ 444

Query: 295 YFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 336
                +   G  +     T +VD+  + G +  A  L ++MP
Sbjct: 445 IHGYTIRS-GFESNVVVGTGLVDIYAKCGNVNTAQKLFERMP 485



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 82/241 (34%), Positives = 137/241 (56%), Gaps = 6/241 (2%)

Query: 98  EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGL 157
           E + +  +A+ S Y +CG L+ A ++F   P + VV+W A+I+GY      +N    + L
Sbjct: 152 ESDVIVGTALASMYTKCGSLENARQVFDRMPKRDVVSWNAIIAGYS-----QNGQPYEAL 206

Query: 158 KLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMY 217
            L   M   GI+PN+S+L SV+  C+HL +L+ GKQ+H    +S +  D   +  L++MY
Sbjct: 207 ALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRSGIESDVLVVNGLVNMY 266

Query: 218 CKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFV 277
            KCG++  A KLF  +  +DV +WNA+I GY+ + +  +AL  F++M+  G+KP+SIT V
Sbjct: 267 AKCGNVNTAHKLFERMPIRDVASWNAIIGGYSLNSQHHEALAFFNRMQVRGIKPNSITMV 326

Query: 278 ALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPF 337
           ++L AC H   ++ G Q     +   G  +       +V++  + G +  A  L ++MP 
Sbjct: 327 SVLPACAHLFALEQGQQIHGYAIRS-GFESNDVVGNALVNMYAKCGNVNSAYKLFERMPK 385

Query: 338 K 338
           K
Sbjct: 386 K 386



 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 70/209 (33%), Positives = 112/209 (53%), Gaps = 6/209 (2%)

Query: 130 KSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQ 189
            + V W   I GY+K G+    W    L+L   M   GI P+     SV+  C   S LQ
Sbjct: 83  NNAVVWKETIIGYVKNGF----W-NKALRLYYQMQRTGINPDKLVFLSVIKACGSQSDLQ 137

Query: 190 LGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYA 249
            G++VH+ +       D    T L SMY KCG LE+A ++F  + ++DVV+WNA+I+GY+
Sbjct: 138 AGRKVHEDIIARGFESDVIVGTALASMYTKCGSLENARQVFDRMPKRDVVSWNAIIAGYS 197

Query: 250 QHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKP 309
           Q+G+  +AL LF +M+  G+KP+S T V+++  C H   ++ G Q     +   GI +  
Sbjct: 198 QNGQPYEALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRS-GIESDV 256

Query: 310 DHYTCMVDLLGRAGKLVEAVDLIKKMPFK 338
                +V++  + G +  A  L ++MP +
Sbjct: 257 LVVNGLVNMYAKCGNVNTAHKLFERMPIR 285



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/102 (26%), Positives = 50/102 (49%), Gaps = 1/102 (0%)

Query: 235 RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ 294
           R + V W   I GY ++G   KALRL+ +M+  G+ PD + F++++ AC     +  G +
Sbjct: 82  RNNAVVWKETIIGYVKNGFWNKALRLYYQMQRTGINPDKLVFLSVIKACGSQSDLQAGRK 141

Query: 295 YFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 336
             + ++   G  +     T +  +  + G L  A  +  +MP
Sbjct: 142 VHEDIIAR-GFESDVIVGTALASMYTKCGSLENARQVFDRMP 182


>gi|357481283|ref|XP_003610927.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512262|gb|AES93885.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 802

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 237/564 (42%), Positives = 329/564 (58%), Gaps = 47/564 (8%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G L DAQ LFD+IPQ D+ S+N M+S    N   +  A   F  +P +D  SWN +ISG+
Sbjct: 112 GSLVDAQMLFDEIPQKDLCSWNTMISG-YANVGRIEQARKLFDEMPHRDNFSWNAVISGY 170

Query: 81  VQKKNMAKARDLFLAMPEKNS--------------------------------------- 101
           V +    +A DLF  M E  S                                       
Sbjct: 171 VSQGWYMEALDLFRMMQENESSNCNMFTLSSALAAAAAISSLRRGKEIHGYLIRSGLELD 230

Query: 102 -VSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLL 160
            V W+A++  Y +CG L++A  +F     K +V+WT MI         E+   ++G  L 
Sbjct: 231 EVVWTALLDLYGKCGSLNEARGIFDQMADKDIVSWTTMIHRCF-----EDGRKKEGFSLF 285

Query: 161 RMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKC 220
           R ++G G+RPN  + + VL  C+ L++ Q+GK+VH  + +      + A + L+ +Y KC
Sbjct: 286 RDLMGSGVRPNEYTFAGVLNACADLAAEQMGKEVHGYMTRVGYDPFSFAASALVHVYSKC 345

Query: 221 GDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 280
           G+ E A ++F ++ R D+V+W ++I GYAQ+G+ + AL+ F+ +   G KPD ITFV +L
Sbjct: 346 GNTETARRVFNQMPRPDLVSWTSLIVGYAQNGQPDMALQFFESLLRSGTKPDEITFVGVL 405

Query: 281 LACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQ 340
            AC HAGLVD+G++YF S+   +G+    DHY C++DLL R+G+  EA ++I  MP KP 
Sbjct: 406 SACTHAGLVDIGLEYFHSVKEKHGLVHTADHYACVIDLLARSGRFKEAENIIDNMPMKPD 465

Query: 341 PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRL 400
             ++ +LL  CR+H  ++LAE AA  LF L P N A  Y+ L+NIYA    W +  ++R 
Sbjct: 466 KFLWASLLGGCRIHGNIELAERAAKALFELEPENPA-TYITLSNIYANAGLWTEETKVRN 524

Query: 401 SMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEF 460
            M    +VK PG SWIE+   VH F  GD  HP++  IHE L EL K+MK  GYV D  F
Sbjct: 525 DMDNRGIVKKPGKSWIEIKRQVHVFLVGDTSHPKISDIHEYLGELSKKMKEEGYVADTNF 584

Query: 461 ALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEK 520
            LH V EE KEQ + +HSEKLA+AFG+I    GTPI+VFKNLR C DCH A KYIS I +
Sbjct: 585 VLHDVEEEQKEQNIFYHSEKLAVAFGIISTSPGTPIKVFKNLRTCVDCHNAMKYISKIVQ 644

Query: 521 REIIVRDTTRFHHFKDGTCSCGDY 544
           R+IIVRD+ RFH F DG+CSC DY
Sbjct: 645 RKIIVRDSNRFHCFVDGSCSCKDY 668



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 96/360 (26%), Positives = 171/360 (47%), Gaps = 39/360 (10%)

Query: 19  QRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTAS------ 72
           Q+ +LK+A +   +IPQP    Y+ +++  L +        +  +R+     AS      
Sbjct: 44  QQNRLKEAVDYLHRIPQPSPRLYSTLIAACLRHR-----KLELGKRVHAHTKASNFIPGI 98

Query: 73  --WNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVK 130
              N +I  + +  ++  A+ LF  +P+K+  SW+ MISGY   G++++A +LF   P +
Sbjct: 99  VISNRLIHMYAKCGSLVDAQMLFDEIPQKDLCSWNTMISGYANVGRIEQARKLFDEMPHR 158

Query: 131 SVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLL------GCSH 184
              +W A+IS     GYV   W  + L L RMM     + N SS  ++          + 
Sbjct: 159 DNFSWNAVIS-----GYVSQGWYMEALDLFRMM-----QENESSNCNMFTLSSALAAAAA 208

Query: 185 LSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAM 244
           +SSL+ GK++H  + +S L  D    T L+ +Y KCG L +A  +F ++  KD+V+W  M
Sbjct: 209 ISSLRRGKEIHGYLIRSGLELDEVVWTALLDLYGKCGSLNEARGIFDQMADKDIVSWTTM 268

Query: 245 ISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYG 304
           I    + G+ ++   LF  +   G++P+  TF  +L AC      DL  +     V+ Y 
Sbjct: 269 IHRCFEDGRKKEGFSLFRDLMGSGVRPNEYTFAGVLNAC-----ADLAAEQMGKEVHGYM 323

Query: 305 IAAKPDHY----TCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLA 360
                D +    + +V +  + G    A  +  +MP +P    + +L+     + + D+A
Sbjct: 324 TRVGYDPFSFAASALVHVYSKCGNTETARRVFNQMP-RPDLVSWTSLIVGYAQNGQPDMA 382



 Score = 41.2 bits (95), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 16/47 (34%), Positives = 33/47 (70%), Gaps = 1/47 (2%)

Query: 315 MVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAE 361
           +++L  +  +L EAVD + ++P +P P ++ TL++AC  H++L+L +
Sbjct: 38  IIELFCQQNRLKEAVDYLHRIP-QPSPRLYSTLIAACLRHRKLELGK 83


>gi|225423499|ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 738

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 257/578 (44%), Positives = 335/578 (57%), Gaps = 51/578 (8%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNS--DDVVAAFDFFQRLPI 67
           ++ L     Q G+L  A+ +F K    D VS+  +++   L    DD   A   F+ +P+
Sbjct: 170 HTSLINMYAQNGELGYAELVFSKSSLRDAVSFTALITGYTLRGCLDD---ARRLFEEIPV 226

Query: 68  KDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSV------------------------- 102
           +D  SWN MI+G+ Q     +A   F  M   N                           
Sbjct: 227 RDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVLSACAQSGSLELGNWV 286

Query: 103 -SW-------------SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYV 148
            SW             +A+I  Y +CG LDKA +LF+    K +++W  MI GY      
Sbjct: 287 RSWIEDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHM--- 343

Query: 149 ENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTT 208
            NS+ E  L L R M    + PN  +  S+L  C++L +L LGK +H  + K  L    T
Sbjct: 344 -NSYKE-ALALFRKMQQSNVEPNDVTFVSILPACAYLGALDLGKWIHAYIDKKFLGLTNT 401

Query: 209 AL-TPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE 267
           +L T LI MY KCG++E A ++F  ++ K + +WNAMISG A HG    AL LF +M+DE
Sbjct: 402 SLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAMISGLAMHGHANMALELFRQMRDE 461

Query: 268 GMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVE 327
           G +PD ITFV +L AC+HAGLV+LG Q F SMV DY I+ K  HY CM+DLLGRAG   E
Sbjct: 462 GFEPDDITFVGVLSACSHAGLVELGRQCFSSMVEDYDISPKLQHYGCMIDLLGRAGLFDE 521

Query: 328 AVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYA 387
           A  L+K M  KP  AI+G+LL ACRVH  ++L EFAA +LF L P N  G YV L+NIYA
Sbjct: 522 AEALMKNMEMKPDGAIWGSLLGACRVHGNVELGEFAAKHLFELEPENP-GAYVLLSNIYA 580

Query: 388 AMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEK 447
              +WDDVARIR  + +  + K+PG S IEV +VVHEF  GD+VH +   I++ L E+++
Sbjct: 581 TAGRWDDVARIRTKLNDKGMKKVPGCSSIEVDSVVHEFLVGDKVHEQSQDIYKMLDEIDQ 640

Query: 448 RMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGD 507
            ++ AG+VPD    L+ + EE KE  L  HSEKLAIAFGLI     T IR+ KNLRVCG+
Sbjct: 641 LLEKAGHVPDTSEVLYDMDEEWKEGSLSHHSEKLAIAFGLISTKPETTIRIVKNLRVCGN 700

Query: 508 CHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           CH A K IS I  REII RD  RFHHFKDG+CSC DYW
Sbjct: 701 CHSAIKLISKIFNREIIARDRNRFHHFKDGSCSCMDYW 738



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 93/380 (24%), Positives = 163/380 (42%), Gaps = 68/380 (17%)

Query: 47  CILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM----PEKNSV 102
           C +    ++  A   F+ +   +   WNTMI G     +   A D ++ M     E NS 
Sbjct: 74  CAISPFGNLSYALLLFESIEQPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSY 133

Query: 103 SW-----------------------------------SAMISGYIECGQLDKAVELFKVA 127
           ++                                   +++I+ Y + G+L  A  +F  +
Sbjct: 134 TFPFLLKSCAKVGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKS 193

Query: 128 PVKSVVAWTAMISGY--------------------------MKFGYVENSWAEDGLKLLR 161
            ++  V++TA+I+GY                          M  GY ++   E+ L   +
Sbjct: 194 SLRDAVSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQ 253

Query: 162 MMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCG 221
            M    + PN S++ +VL  C+   SL+LG  V   +    L  +   +  LI MY KCG
Sbjct: 254 EMKRANVAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCG 313

Query: 222 DLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLL 281
           DL+ A  LF  I  KD+++WN MI GY+     ++AL LF KM+   ++P+ +TFV++L 
Sbjct: 314 DLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILP 373

Query: 282 ACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQP 341
           AC + G +DLG      +   +        +T ++D+  + G +  A  +   M  KP+ 
Sbjct: 374 ACAYLGALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGM--KPKS 431

Query: 342 -AIFGTLLSACRVHKRLDLA 360
              +  ++S   +H   ++A
Sbjct: 432 LGSWNAMISGLAMHGHANMA 451


>gi|328774749|gb|AEB39774.1| pentatricopeptide repeat protein 65 [Funaria hygrometrica]
          Length = 771

 Score =  458 bits (1179), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 228/544 (41%), Positives = 338/544 (62%), Gaps = 15/544 (2%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
            + L G   + G +  AQ +FDK+P+ +VV++ ++++        V  A +  +++   +
Sbjct: 235 GTSLVGMYAKCGDISKAQVIFDKLPEKNVVTWTLLIAG-YAQQGQVDVALELLEKMQQAE 293

Query: 70  TA----SWNTMISGFVQKKNMAKARDL--FLAMPEKNSVSW--SAMISGYIECGQLDKAV 121
            A    ++ +++ G      +   + +  ++         W  +A+I+ Y +CG L +A 
Sbjct: 294 VAPNKITYTSILQGCTTPLALEHGKKVHRYIIQSGYGREIWVVNALITMYCKCGGLKEAR 353

Query: 122 ELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLG 181
           +LF   P + VV WTAM++GY + G+      ++ + L R M   GI+P+  + +S L  
Sbjct: 354 KLFGDLPHRDVVTWTAMVTGYAQLGF-----HDEAIDLFRRMQQQGIKPDKMTFTSALTS 408

Query: 182 CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTW 241
           CS  + LQ GK +HQ +  +    D    + L+SMY KCG ++DA  +F ++  ++VV W
Sbjct: 409 CSSPAFLQEGKSIHQQLVHAGYSLDVYLQSALVSMYAKCGSMDDARLVFNQMSERNVVAW 468

Query: 242 NAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN 301
            AMI+G AQHG+  +AL  F++MK +G+KPD +TF ++L AC H GLV+ G ++F SM  
Sbjct: 469 TAMITGCAQHGRCREALEYFEQMKKQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYL 528

Query: 302 DYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAE 361
           DYGI    +HY+C VDLLGRAG L EA ++I  MPF+P P+++G LLSACR+H  ++  E
Sbjct: 529 DYGIKPMVEHYSCFVDLLGRAGHLEEAENVILTMPFQPGPSVWGALLSACRIHSDVERGE 588

Query: 362 FAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTV 421
            AA N+  L+P +  G YV L+NIYAA  +++D  ++R  M++ +VVK PG SWIEV   
Sbjct: 589 RAAENVLKLDP-DDDGAYVALSNIYAAAGRYEDAEKVRQVMEKRDVVKEPGQSWIEVDGK 647

Query: 422 VHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKL 481
           VH F   D+ HPE   I+ +L +L +++K  GYVPD  F LH V EE K Q L  HSE+L
Sbjct: 648 VHVFHVEDKSHPEAKEIYAELGKLTEQIKEQGYVPDTRFVLHDVDEEQKVQTLCSHSERL 707

Query: 482 AIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSC 541
           AI +GL+K P GTPIR+ KNLRVCGDCH A+K+IS +  REII RD  RFHHF DG CSC
Sbjct: 708 AITYGLMKTPPGTPIRIVKNLRVCGDCHTASKFISKVVGREIIARDAHRFHHFVDGVCSC 767

Query: 542 GDYW 545
           GD+W
Sbjct: 768 GDFW 771



 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 111/383 (28%), Positives = 200/383 (52%), Gaps = 48/383 (12%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK- 68
           N++L+ +AK  G L DA+ +FD I   ++VS+  M+   +  + + + A+  ++ + +  
Sbjct: 135 NTLLSMYAKC-GSLTDARRVFDGIRDRNIVSWTAMIEAFVAGNQN-LEAYKCYETMKLAG 192

Query: 69  ---DTASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMISGYIECGQLDKAV 121
              D  ++ ++++ F   + +   + + + +     E      ++++  Y +CG + KA 
Sbjct: 193 CKPDKVTFVSLLNAFTNPELLQVGQKVHMEIAKAGLELEPRVGTSLVGMYAKCGDISKAQ 252

Query: 122 ELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLG 181
            +F   P K+VV WT +I+GY + G V+ +     L+LL  M    + PN  + +S+L G
Sbjct: 253 VIFDKLPEKNVVTWTLLIAGYAQQGQVDVA-----LELLEKMQQAEVAPNKITYTSILQG 307

Query: 182 CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTW 241
           C+   +L+ GK+VH+ + +S   ++   +  LI+MYCKCG L++A KLF ++  +DVVTW
Sbjct: 308 CTTPLALEHGKKVHRYIIQSGYGREIWVVNALITMYCKCGGLKEARKLFGDLPHRDVVTW 367

Query: 242 NAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN-----------HAGLVD 290
            AM++GYAQ G  ++A+ LF +M+ +G+KPD +TF + L +C+           H  LV 
Sbjct: 368 TAMVTGYAQLGFHDEAIDLFRRMQQQGIKPDKMTFTSALTSCSSPAFLQEGKSIHQQLVH 427

Query: 291 LGIQ---YFDS-MVNDYGIAAKPDH---------------YTCMVDLLGRAGKLVEAVDL 331
            G     Y  S +V+ Y      D                +T M+    + G+  EA++ 
Sbjct: 428 AGYSLDVYLQSALVSMYAKCGSMDDARLVFNQMSERNVVAWTAMITGCAQHGRCREALEY 487

Query: 332 ---IKKMPFKPQPAIFGTLLSAC 351
              +KK   KP    F ++LSAC
Sbjct: 488 FEQMKKQGIKPDKVTFTSVLSAC 510



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 101/404 (25%), Positives = 181/404 (44%), Gaps = 50/404 (12%)

Query: 48  ILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQK----KNMAKARDLFLAM----PEK 99
           IL     +  A      + ++ T  ++ +  G +Q+    +++ + R++  A+     + 
Sbjct: 70  ILCKQGRLKEALGILNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGIQP 129

Query: 100 NSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKL 159
           N    + ++S Y +CG L  A  +F     +++V+WTAMI  +     V  +   +  K 
Sbjct: 130 NRYLENTLLSMYAKCGSLTDARRVFDGIRDRNIVSWTAMIEAF-----VAGNQNLEAYKC 184

Query: 160 LRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCK 219
              M   G +P+  +  S+L   ++   LQ+G++VH  + K+ L  +    T L+ MY K
Sbjct: 185 YETMKLAGCKPDKVTFVSLLNAFTNPELLQVGQKVHMEIAKAGLELEPRVGTSLVGMYAK 244

Query: 220 CGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVAL 279
           CGD+  A  +F ++  K+VVTW  +I+GYAQ G+ + AL L +KM+   + P+ IT+ ++
Sbjct: 245 CGDISKAQVIFDKLPEKNVVTWTLLIAGYAQQGQVDVALELLEKMQQAEVAPNKITYTSI 304

Query: 280 LLACN-----------HAGLVDLG----IQYFDSMVNDY-------------GIAAKPD- 310
           L  C            H  ++  G    I   ++++  Y             G     D 
Sbjct: 305 LQGCTTPLALEHGKKVHRYIIQSGYGREIWVVNALITMYCKCGGLKEARKLFGDLPHRDV 364

Query: 311 -HYTCMVDLLGRAGKLVEAVDLIKKMP---FKPQPAIFGTLLSACRVHKRLDLAEFAAMN 366
             +T MV    + G   EA+DL ++M     KP    F + L++C     L   +     
Sbjct: 365 VTWTAMVTGYAQLGFHDEAIDLFRRMQQQGIKPDKMTFTSALTSCSSPAFLQEGKSIHQQ 424

Query: 367 LFNLNPANAAGCYVQ--LANIYAAMKKWDDVARIRLSMKENNVV 408
           L  ++   +   Y+Q  L ++YA     DD   +   M E NVV
Sbjct: 425 L--VHAGYSLDVYLQSALVSMYAKCGSMDDARLVFNQMSERNVV 466


>gi|297848224|ref|XP_002891993.1| hypothetical protein ARALYDRAFT_337864 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297337835|gb|EFH68252.1| hypothetical protein ARALYDRAFT_337864 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 950

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 239/571 (41%), Positives = 338/571 (59%), Gaps = 30/571 (5%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  +  V+W  +  G     G++ DA++L+D +P  DVV+   M+   L     V  A +
Sbjct: 136 MPERNEVSWTVMFGGLIDG-GRIDDARKLYDMMPGKDVVASTNMIGG-LCREGRVDEARE 193

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
            F  +  ++  +W TMI+G+ Q K +  AR LF  MPEK  VSW++M+ GY   G+++ A
Sbjct: 194 IFDEMRERNVITWTTMITGYGQNKRVDVARKLFEVMPEKTEVSWTSMLLGYTLSGRIEDA 253

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFG--------------------------YVENSWAE 154
            E F+V P+K V+A  AMI    + G                          Y    +  
Sbjct: 254 EEFFEVMPMKPVIACNAMIVALGEVGEIVKARRVFDQMEDRDNATWRGMIKAYERKGFEL 313

Query: 155 DGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLI 214
           + L+L   M   G+RP+  SL S+L  C+ L+SLQ G+QVH  + +     D    + L+
Sbjct: 314 EALELFAQMQRQGVRPSFPSLISILSVCATLASLQYGRQVHAHLVRCQFDGDVYVASVLM 373

Query: 215 SMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSI 274
           +MY KCG+L  A  +F     KD++ WN++ISGYA HG GE+AL++F +M   G  P+ +
Sbjct: 374 TMYVKCGELVKAKLVFDRFPSKDIIMWNSIISGYASHGLGEEALKVFHEMPLSGTMPNKV 433

Query: 275 TFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKK 334
           T +A+L AC++ G ++ G++ F+SM + + +    +HY+C VD+LGRAGK+ +A++LI  
Sbjct: 434 TLIAILTACSYGGKLEEGLEIFESMESKFCVTPTVEHYSCTVDMLGRAGKVDKAMELINS 493

Query: 335 MPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDD 394
           M  KP   ++G LL AC+ H RLDLAE AA  LF + P N AG Y+ L++I A+  KW D
Sbjct: 494 MTIKPDATVWGALLGACKTHSRLDLAEVAAKKLFEIEPEN-AGPYILLSSINASRSKWGD 552

Query: 395 VARIRLSMKENNVVKMPGYSWIEVGTVVHEF-RSGDRVHPELVSIHEKLKELEKRMKLAG 453
           VA +R +M+  NV K PG SWIEVG  VH F R G R HPE   I   L++ +  ++ AG
Sbjct: 553 VAEMRKNMRTKNVSKFPGCSWIEVGKKVHMFTRGGIRNHPEQAMILMMLEKTDGLLREAG 612

Query: 454 YVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATK 513
           Y PD    LH V EE K   L  HSE+LA+A+GL+K+P G PIRV KNLRVCGDCH A K
Sbjct: 613 YSPDCSHVLHDVDEEEKVDSLSRHSERLAVAYGLLKLPEGVPIRVMKNLRVCGDCHAAIK 672

Query: 514 YISAIEKREIIVRDTTRFHHFKDGTCSCGDY 544
            IS + +REII+RD  RFHHF +G CSC DY
Sbjct: 673 LISKVTEREIILRDANRFHHFNNGECSCRDY 703



 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 96/373 (25%), Positives = 177/373 (47%), Gaps = 56/373 (15%)

Query: 2   NVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDF 61
           +  T VN NS       + G++ +A++ FD +    + S+N ++S    N      A   
Sbjct: 13  STSTGVN-NSFEISRLSRIGQINEARKFFDSLRYKAIGSWNSIVSGYFANGLPR-EARQM 70

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAV 121
           F  +P ++  SWN ++SG+++ + + +AR++F  MPE+N VSW+AM+ GY++ G + +A 
Sbjct: 71  FDEMPERNIVSWNGLVSGYIKNRMIEEARNVFEIMPERNVVSWTAMVKGYVQEGMVVEAE 130

Query: 122 ELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLG 181
            LF   P ++ V+WT M  G +  G +     +D  KL  MM G                
Sbjct: 131 LLFWRMPERNEVSWTVMFGGLIDGGRI-----DDARKLYDMMPG---------------- 169

Query: 182 CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTW 241
                                  KD  A T +I   C+ G +++A ++F E++ ++V+TW
Sbjct: 170 -----------------------KDVVASTNMIGGLCREGRVDEAREIFDEMRERNVITW 206

Query: 242 NAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN 301
             MI+GY Q+ + + A +LF+ M ++      +++ ++LL    +G ++   ++F+ M  
Sbjct: 207 TTMITGYGQNKRVDVARKLFEVMPEK----TEVSWTSMLLGYTLSGRIEDAEEFFEVMPM 262

Query: 302 DYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAE 361
              IA        M+  LG  G++V+A  +  +M  +      G + +  R    L+  E
Sbjct: 263 KPVIAC-----NAMIVALGEVGEIVKARRVFDQMEDRDNATWRGMIKAYERKGFELEALE 317

Query: 362 -FAAMNLFNLNPA 373
            FA M    + P+
Sbjct: 318 LFAQMQRQGVRPS 330



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 60/275 (21%), Positives = 117/275 (42%), Gaps = 45/275 (16%)

Query: 92  LFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGY--------- 142
           L  A      V+ S  IS     GQ+++A + F     K++ +W +++SGY         
Sbjct: 8   LHRAYSTSTGVNNSFEISRLSRIGQINEARKFFDSLRYKAIGSWNSIVSGYFANGLPREA 67

Query: 143 -----------------MKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHL 185
                            +  GY++N   E+   +  +M       N  S ++++ G    
Sbjct: 68  RQMFDEMPERNIVSWNGLVSGYIKNRMIEEARNVFEIM----PERNVVSWTAMVKG---- 119

Query: 186 SSLQLGKQVH-QLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAM 244
             +Q G  V  +L+F     ++  + T +       G ++DA KL+  +  KDVV    M
Sbjct: 120 -YVQEGMVVEAELLFWRMPERNEVSWTVMFGGLIDGGRIDDARKLYDMMPGKDVVASTNM 178

Query: 245 ISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYG 304
           I G  + G+ ++A  +FD+M++  +    IT+  ++        VD+  + F+ M     
Sbjct: 179 IGGLCREGRVDEAREIFDEMRERNV----ITWTTMITGYGQNKRVDVARKLFEVMPEKTE 234

Query: 305 IAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKP 339
           ++     +T M+     +G++ +A +  + MP KP
Sbjct: 235 VS-----WTSMLLGYTLSGRIEDAEEFFEVMPMKP 264


>gi|34393605|dbj|BAC83258.1| pentatricopeptide (PPR) repeat-containing protein-like protein
           [Oryza sativa Japonica Group]
 gi|50509373|dbj|BAD30928.1| pentatricopeptide (PPR) repeat-containing protein-like protein
           [Oryza sativa Japonica Group]
          Length = 808

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 231/553 (41%), Positives = 334/553 (60%), Gaps = 18/553 (3%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELF-----DKIPQPDVVSYNIMLSC----ILLNSDD 54
           K  V WN++++G+  Q G   DA ELF     +K+P  +    +++ +C      ++   
Sbjct: 263 KFDVVWNAMISGYV-QSGMCADAFELFRRMVSEKVPLDEFTFTSVLSACANAGFFVHGKS 321

Query: 55  VVAAFDFFQR--LPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYI 112
           V       Q   +P       N +++ + +   +  A+ +F  M  K+ VSW+ ++SGYI
Sbjct: 322 VHGQIIRLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGYI 381

Query: 113 ECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNA 172
           + G LDKAVE+FKV P K+ ++W  M+SGY     V    +ED LKL   M    ++P  
Sbjct: 382 DSGCLDKAVEVFKVMPYKNDLSWMVMVSGY-----VHGGLSEDALKLFNQMRAEDVKPCD 436

Query: 173 SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLE 232
            + +  +  C  L +L+ G+Q+H  + +       +A   L++MY KCG + DA  +FL 
Sbjct: 437 YTYAGAIAACGELGALKHGRQLHAHLVQCGFEASNSAGNALLTMYAKCGAVNDARLVFLV 496

Query: 233 IQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 292
           +   D V+WNAMIS   QHG G +AL LFD+M  EG+ PD I+F+ +L ACNHAGLVD G
Sbjct: 497 MPNLDSVSWNAMISALGQHGHGREALELFDQMVAEGIDPDRISFLTILTACNHAGLVDEG 556

Query: 293 IQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACR 352
             YF+SM  D+GI+   DHY  ++DLLGR+G++ EA DLIK MPF+P P+I+  +LS CR
Sbjct: 557 FHYFESMKRDFGISPGEDHYARLIDLLGRSGRIGEARDLIKTMPFEPTPSIWEAILSGCR 616

Query: 353 VHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPG 412
            +  ++   +AA  LF + P +  G Y+ L+N Y+A  +W D AR+R  M++  V K PG
Sbjct: 617 TNGDMEFGAYAADQLFRMIPQH-DGTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPG 675

Query: 413 YSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQ 472
            SWIEVG+ +H F  GD  HPE   +++ L+ +  RM+  GYVPD +F LH +    KE 
Sbjct: 676 CSWIEVGSKIHVFLVGDTKHPEAQEVYQFLEVIGARMRKLGYVPDTKFVLHDMEPHEKEY 735

Query: 473 LLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFH 532
           +L  HSEKLA+ FGL+K+P G  + V KNLR+CGDCH A  ++S    REI+VRD  RFH
Sbjct: 736 ILFAHSEKLAVGFGLLKLPPGATVTVLKNLRICGDCHTAMMFMSKAVGREIVVRDVRRFH 795

Query: 533 HFKDGTCSCGDYW 545
           HFKDG CSCG+YW
Sbjct: 796 HFKDGECSCGNYW 808



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 114/445 (25%), Positives = 175/445 (39%), Gaps = 119/445 (26%)

Query: 21  GKLKDAQELFDKIP--QPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPI----KDTASWN 74
           G+L+DA   FD +P  + D V +N M+S     S    A   F   L       D  S+ 
Sbjct: 108 GRLRDAAAFFDAVPPARRDTVLHNAMMSAFARASLAAPAVSVFHALLGSGSLRPDDYSFT 167

Query: 75  TMISGFVQKKNMA----------------------------------------KARDLFL 94
            +IS   Q  N+A                                         AR +  
Sbjct: 168 ALISAVGQMHNLAAPHCTQLHCSVLKSGAAAVLSVSNALIALYMKCDTPEASWDARKVLD 227

Query: 95  AMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAE 154
            MP+K+ ++W+ M+ GY+  G ++ A  +F+    K  V W AMIS     GYV++    
Sbjct: 228 EMPDKDDLTWTTMVVGYVRRGDVNAARSVFEEVDGKFDVVWNAMIS-----GYVQSGMCA 282

Query: 155 DGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVH-QLVFKSPLCKDTTAL--- 210
           D  +L R M+   +  +  + +SVL  C++      GK VH Q++   P      AL   
Sbjct: 283 DAFELFRRMVSEKVPLDEFTFTSVLSACANAGFFVHGKSVHGQIIRLQPNFVPEAALPVN 342

Query: 211 TPLISMYCKCGDLEDACKLFLEIQRKDVVTWNA--------------------------- 243
             L+++Y K G +  A ++F  +  KDVV+WN                            
Sbjct: 343 NALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGYIDSGCLDKAVEVFKVMPYKNDL 402

Query: 244 ----MISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN-----------HAGL 288
               M+SGY   G  E AL+LF++M+ E +KP   T+   + AC            HA L
Sbjct: 403 SWMVMVSGYVHGGLSEDALKLFNQMRAEDVKPCDYTYAGAIAACGELGALKHGRQLHAHL 462

Query: 289 VDLGIQYFDS-------------MVNDYGIA--AKPD----HYTCMVDLLGRAGKLVEAV 329
           V  G +  +S              VND  +     P+     +  M+  LG+ G   EA+
Sbjct: 463 VQCGFEASNSAGNALLTMYAKCGAVNDARLVFLVMPNLDSVSWNAMISALGQHGHGREAL 522

Query: 330 DLIKKM---PFKPQPAIFGTLLSAC 351
           +L  +M      P    F T+L+AC
Sbjct: 523 ELFDQMVAEGIDPDRISFLTILTAC 547



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 76/306 (24%), Positives = 125/306 (40%), Gaps = 49/306 (16%)

Query: 76  MISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPV--KSVV 133
           +I  +    ++A    LF + P+   V+ +++++ +   G+L  A   F   P   +  V
Sbjct: 69  LIHLYTLSPDLATPAALFRSDPDPGPVAATSLVAAHAAAGRLRDAAAFFDAVPPARRDTV 128

Query: 134 AWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLG-IRPNASSLSSVLLGCSHLSSLQLGK 192
              AM+S + +      S A   + +   ++G G +RP+  S ++++     + +L    
Sbjct: 129 LHNAMMSAFAR-----ASLAAPAVSVFHALLGSGSLRPDDYSFTALISAVGQMHNLAAPH 183

Query: 193 --QVHQLVFKSPLCKDTTALTPLISMYCKC------------------------------ 220
             Q+H  V KS      +    LI++Y KC                              
Sbjct: 184 CTQLHCSVLKSGAAAVLSVSNALIALYMKCDTPEASWDARKVLDEMPDKDDLTWTTMVVG 243

Query: 221 ----GDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITF 276
               GD+  A  +F E+  K  V WNAMISGY Q G    A  LF +M  E +  D  TF
Sbjct: 244 YVRRGDVNAARSVFEEVDGKFDVVWNAMISGYVQSGMCADAFELFRRMVSEKVPLDEFTF 303

Query: 277 VALLLACNHAGLVDLGIQYFDSMV----NDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLI 332
            ++L AC +AG    G      ++    N    AA P +   +V L  + GK+V A  + 
Sbjct: 304 TSVLSACANAGFFVHGKSVHGQIIRLQPNFVPEAALPVN-NALVTLYSKGGKIVIAKRIF 362

Query: 333 KKMPFK 338
             M  K
Sbjct: 363 DTMNLK 368



 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 65/269 (24%), Positives = 121/269 (44%), Gaps = 25/269 (9%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLN--SDDVVAA 58
           MN+K  V+WN++L+G+    G L  A E+F  +P  + +S+ +M+S  +    S+D   A
Sbjct: 365 MNLKDVVSWNTILSGYIDS-GCLDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSED---A 420

Query: 59  FDFFQRLPIKDTASWNTMISGFV----QKKNMAKARDLFLAMP----EKNSVSWSAMISG 110
              F ++  +D    +   +G +    +   +   R L   +     E ++ + +A+++ 
Sbjct: 421 LKLFNQMRAEDVKPCDYTYAGAIAACGELGALKHGRQLHAHLVQCGFEASNSAGNALLTM 480

Query: 111 YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRP 170
           Y +CG ++ A  +F V P    V+W AMIS   + G+       + L+L   M+  GI P
Sbjct: 481 YAKCGAVNDARLVFLVMPNLDSVSWNAMISALGQHGH-----GREALELFDQMVAEGIDP 535

Query: 171 NASSLSSVLLGCSHLSSLQLGKQVHQLVFK----SPLCKDTTALTPLISMYCKCGDLEDA 226
           +  S  ++L  C+H   +  G    + + +    SP       L  L+    + G+  D 
Sbjct: 536 DRISFLTILTACNHAGLVDEGFHYFESMKRDFGISPGEDHYARLIDLLGRSGRIGEARDL 595

Query: 227 CKLFLEIQRKDVVTWNAMISGYAQHGKGE 255
            K         +  W A++SG   +G  E
Sbjct: 596 IKTMPFEPTPSI--WEAILSGCRTNGDME 622


>gi|302791503|ref|XP_002977518.1| hypothetical protein SELMODRAFT_107192 [Selaginella moellendorffii]
 gi|300154888|gb|EFJ21522.1| hypothetical protein SELMODRAFT_107192 [Selaginella moellendorffii]
          Length = 652

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 225/550 (40%), Positives = 348/550 (63%), Gaps = 13/550 (2%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  +  V W ++LA  A +RG++++A+E FD++P+ ++ S+  +LS     S DV AA  
Sbjct: 111 MPERDLVAWTAMLAANA-ERGQMENARETFDQMPERNLFSWTSLLSA-YGRSGDVKAAGR 168

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
            F  +P  +  +W  M++G+    ++ +A+  F +MPE++ ++W+AM+S Y   G L   
Sbjct: 169 VFDSMPEWNLVAWTAMLTGYSLSGDVVRAKRAFDSMPERDLIAWTAMLSAYAFNGHLRYT 228

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMM-----IGLGIRPNASSL 175
            E+F+  P + +++W  M++       VEN   E+  +L   M     +  G+ PN  + 
Sbjct: 229 REIFQRMPERDLISWATMVAAL-----VENDLLEESKELFDRMPRHCALSKGMTPNRVTF 283

Query: 176 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR 235
            ++L  CS L +L  G+++H  V +     D      L++ Y +CG L DA  +F  ++R
Sbjct: 284 ITLLDACSFLGALAEGRKIHAAVAERGFDTDLVVSNALVNFYGRCGALGDAKIVFDGMRR 343

Query: 236 KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQY 295
           +DV++W++MIS +AQ G+ ++A+ L+ +M  EG  PD I F+++L AC+++G+V+    +
Sbjct: 344 RDVISWSSMISAFAQRGRVDEAMELYHRMLSEGTLPDDIIFISVLFACSNSGVVEASGDF 403

Query: 296 FDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHK 355
           F S+V D  +    +HY CMVD+LGRAGKL +A DL++ MPF P P ++ T+LSAC+++ 
Sbjct: 404 FRSIVGDTQVEPTLEHYACMVDVLGRAGKLRDAEDLLRLMPFHPGPLLYMTMLSACKLYT 463

Query: 356 RLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSW 415
            ++  E AA  +F L+P N++  Y+ LANIY+A K+  D ARIR  M+E  + K PG SW
Sbjct: 464 DVERGEAAAEVVFELDPENSSP-YITLANIYSAAKRPKDAARIRKLMEERGIKKKPGCSW 522

Query: 416 IEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLL 475
           IEV   VHEF +GD++HP+   I+ +++ L ++MK AGY  D +  L  V E+ KE LL 
Sbjct: 523 IEVLDRVHEFIAGDKMHPQRDEIYAEIQRLGRQMKEAGYFQDTKVVLQDVEEDEKENLLW 582

Query: 476 FHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFK 535
           +HSEKLAIAFGLI  P G P+R+ KNLRVC DCH ATK IS +  REI+VRDT RFHHF+
Sbjct: 583 YHSEKLAIAFGLISTPPGAPLRIVKNLRVCSDCHAATKVISKVTGREILVRDTNRFHHFQ 642

Query: 536 DGTCSCGDYW 545
           +G CSC DYW
Sbjct: 643 NGMCSCNDYW 652



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 95/382 (24%), Positives = 172/382 (45%), Gaps = 84/382 (21%)

Query: 8   NWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPI 67
           +W ++L+ FA   G  ++A+ LFD + + D++++ IML+ +   S+   A + F Q +P 
Sbjct: 56  SWTALLSAFALS-GHHEEAKTLFDTMQERDLIAWTIMLTVLATFSNIEDAKYHFDQ-MPE 113

Query: 68  KDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVA 127
           +D  +W  M++   ++  M  AR+ F  MPE+N  SW++++S Y   G +  A  +F   
Sbjct: 114 RDLVAWTAMLAANAERGQMENARETFDQMPERNLFSWTSLLSAYGRSGDVKAAGRVFDSM 173

Query: 128 PVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSS 187
           P  ++VAWTAM++GY   G V  +                                    
Sbjct: 174 PEWNLVAWTAMLTGYSLSGDVVRA------------------------------------ 197

Query: 188 LQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISG 247
                   +  F S   +D  A T ++S Y   G L    ++F  +  +D+++W  M++ 
Sbjct: 198 --------KRAFDSMPERDLIAWTAMLSAYAFNGHLRYTREIFQRMPERDLISWATMVAA 249

Query: 248 YAQHGKGEKALRLFDKMK-----DEGMKPDSITFVALLLACN-----------HAGLVDL 291
             ++   E++  LFD+M       +GM P+ +TF+ LL AC+           HA + + 
Sbjct: 250 LVENDLLEESKELFDRMPRHCALSKGMTPNRVTFITLLDACSFLGALAEGRKIHAAVAER 309

Query: 292 GIQ----YFDSMVNDYG-IAAKPD--------------HYTCMVDLLGRAGKLVEAVDLI 332
           G        +++VN YG   A  D               ++ M+    + G++ EA++L 
Sbjct: 310 GFDTDLVVSNALVNFYGRCGALGDAKIVFDGMRRRDVISWSSMISAFAQRGRVDEAMELY 369

Query: 333 KKMPFK---PQPAIFGTLLSAC 351
            +M  +   P   IF ++L AC
Sbjct: 370 HRMLSEGTLPDDIIFISVLFAC 391


>gi|357116509|ref|XP_003560023.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Brachypodium distachyon]
          Length = 804

 Score =  454 bits (1167), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 234/551 (42%), Positives = 334/551 (60%), Gaps = 20/551 (3%)

Query: 7   VNWNSVLAGFAKQRGKLKDAQELF-----DKIPQPDVVSYNIMLSC-----ILLNSDDVV 56
           V WN++++G+  Q G   +A ELF      +IP PD  ++  +LS        L+   V 
Sbjct: 262 VVWNAMISGYV-QSGMCAEAFELFRRMVSKRIP-PDEFTFTSLLSACANAGFFLHGKSVH 319

Query: 57  AAFDFFQR--LPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIEC 114
             F   Q   +P       N +++ + +   +A A  +F +M  K+ VSW+ ++SGYIE 
Sbjct: 320 GQFIRLQPDFVPEAALPVNNALVTLYSKSGKIAVATKIFDSMTLKDVVSWNTILSGYIES 379

Query: 115 GQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASS 174
           G LD A  +FK  P KS ++W  M+SGY     V    AED LKL   M    ++P   +
Sbjct: 380 GCLDNAARIFKEMPYKSELSWMVMVSGY-----VHGGLAEDALKLFNQMRSEDVKPCDYT 434

Query: 175 LSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ 234
            +  +  C  L +L+ GKQ+H  + +       +A   L++MY +CG ++DA  +FL + 
Sbjct: 435 YAGAVAACGELGALKHGKQLHAHLVQCGFEASNSAGNALLTMYARCGAVKDARLVFLVMP 494

Query: 235 RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ 294
             D V+WNAMIS   QHG G +AL LFD+M  +G+ PD I+F+ +L ACNHAGLVD G Q
Sbjct: 495 NVDSVSWNAMISALGQHGHGREALELFDQMVAQGIYPDRISFLTILTACNHAGLVDDGFQ 554

Query: 295 YFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVH 354
           YF+SM  D+GI+   DHY  ++DLLGRAG++ EA DLIK MPF+P PAI+  +LS CR++
Sbjct: 555 YFESMERDFGISPGEDHYARLIDLLGRAGRIGEARDLIKTMPFEPTPAIWEAILSGCRIN 614

Query: 355 KRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYS 414
             ++L  +AA  LF + P +  G Y+ L+N Y+A  +W D AR+R  M++  V K PG S
Sbjct: 615 GDMELGAYAADQLFKMVPEH-DGTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGCS 673

Query: 415 WIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLL 474
           WIEVG  VH F  GD  HP+   ++  L+ +  +M+  GYVPD +FAL  +    KE +L
Sbjct: 674 WIEVGNKVHVFLVGDTKHPDAHEVYRFLEMVGAKMRKLGYVPDTKFALQDMAPHEKEYVL 733

Query: 475 LFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHF 534
             HSE+LA++FGL+K+P G  + V KNL++CGDCH A  ++S    REI+VRD  RFHHF
Sbjct: 734 FAHSERLAVSFGLLKLPAGATVTVLKNLKICGDCHTAMMFMSRAVGREIVVRDVRRFHHF 793

Query: 535 KDGTCSCGDYW 545
           KDG CSCG+YW
Sbjct: 794 KDGECSCGNYW 804



 Score =  111 bits (278), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 103/447 (23%), Positives = 173/447 (38%), Gaps = 122/447 (27%)

Query: 21  GKLKDAQELFDKIP--QPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTA------S 72
           G+L+D+   FD +P  + D V +N M+S     +     A   F+ L   D +      S
Sbjct: 103 GRLRDSAAFFDSVPVARRDTVLHNAMISA-FARASLAAPAVSVFRSLLASDDSLRPDDYS 161

Query: 73  WNTMISGFVQKKNMA----------------------------------------KARDL 92
           + +++S   Q  ++A                                         AR +
Sbjct: 162 FTSLLSAVGQMHDLAVSHCTQLHCAVHKLGAGAVLSVSNALIALYMKCDAPGVTRDARKV 221

Query: 93  FLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSW 152
              MPEK+ ++W+ ++ G++  G +  A   F+    +  V W AMIS     GYV++  
Sbjct: 222 LDEMPEKDELTWTTIVVGHVRKGDVHAARSAFEEIDGEFDVVWNAMIS-----GYVQSGM 276

Query: 153 AEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVH----------------- 195
             +  +L R M+   I P+  + +S+L  C++      GK VH                 
Sbjct: 277 CAEAFELFRRMVSKRIPPDEFTFTSLLSACANAGFFLHGKSVHGQFIRLQPDFVPEAALP 336

Query: 196 ------------------QLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKD 237
                               +F S   KD  +   ++S Y + G L++A ++F E+  K 
Sbjct: 337 VNNALVTLYSKSGKIAVATKIFDSMTLKDVVSWNTILSGYIESGCLDNAARIFKEMPYKS 396

Query: 238 VVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFD 297
            ++W  M+SGY   G  E AL+LF++M+ E +KP   T+   + AC   G +  G Q   
Sbjct: 397 ELSWMVMVSGYVHGGLAEDALKLFNQMRSEDVKPCDYTYAGAVAACGELGALKHGKQLHA 456

Query: 298 SMV-------NDYGIAAKPDHYTC-----------------------MVDLLGRAGKLVE 327
            +V       N  G A    +  C                       M+  LG+ G   E
Sbjct: 457 HLVQCGFEASNSAGNALLTMYARCGAVKDARLVFLVMPNVDSVSWNAMISALGQHGHGRE 516

Query: 328 AVDLIKKMPFK---PQPAIFGTLLSAC 351
           A++L  +M  +   P    F T+L+AC
Sbjct: 517 ALELFDQMVAQGIYPDRISFLTILTAC 543



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 78/302 (25%), Positives = 120/302 (39%), Gaps = 50/302 (16%)

Query: 80  FVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPV--KSVVAWTA 137
           +    ++A    LF A P    V+ ++++S Y   G+L  +   F   PV  +  V   A
Sbjct: 70  YTLSPDLATPAVLFRADP--GPVAATSLVSAYAVAGRLRDSAAFFDSVPVARRDTVLHNA 127

Query: 138 MISGYMKFGYVENSWAEDGLKLLRMMIGL--GIRPNASSLSSVLLGCSHLSSLQLGK--Q 193
           MIS + +      S A   + + R ++     +RP+  S +S+L     +  L +    Q
Sbjct: 128 MISAFAR-----ASLAAPAVSVFRSLLASDDSLRPDDYSFTSLLSAVGQMHDLAVSHCTQ 182

Query: 194 VHQLVFKSPLCKDTTALTPLISMYCKC--------------------------------- 220
           +H  V K       +    LI++Y KC                                 
Sbjct: 183 LHCAVHKLGAGAVLSVSNALIALYMKCDAPGVTRDARKVLDEMPEKDELTWTTIVVGHVR 242

Query: 221 -GDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVAL 279
            GD+  A   F EI  +  V WNAMISGY Q G   +A  LF +M  + + PD  TF +L
Sbjct: 243 KGDVHAARSAFEEIDGEFDVVWNAMISGYVQSGMCAEAFELFRRMVSKRIPPDEFTFTSL 302

Query: 280 LLACNHAGLVDLGIQY---FDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 336
           L AC +AG    G      F  +  D+   A       +V L  ++GK+  A  +   M 
Sbjct: 303 LSACANAGFFLHGKSVHGQFIRLQPDFVPEAALPVNNALVTLYSKSGKIAVATKIFDSMT 362

Query: 337 FK 338
            K
Sbjct: 363 LK 364



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 66/279 (23%), Positives = 121/279 (43%), Gaps = 27/279 (9%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCIL---LNSDDVVA 57
           M +K  V+WN++L+G+  + G L +A  +F ++P    +S+ +M+S  +   L  D    
Sbjct: 361 MTLKDVVSWNTILSGYI-ESGCLDNAARIFKEMPYKSELSWMVMVSGYVHGGLAED---- 415

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQ--------KKNMAKARDLFLAMPEKNSVSWSAMIS 109
           A   F ++  +D    +   +G V         K        L     E ++ + +A+++
Sbjct: 416 ALKLFNQMRSEDVKPCDYTYAGAVAACGELGALKHGKQLHAHLVQCGFEASNSAGNALLT 475

Query: 110 GYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIR 169
            Y  CG +  A  +F V P    V+W AMIS   + G+       + L+L   M+  GI 
Sbjct: 476 MYARCGAVKDARLVFLVMPNVDSVSWNAMISALGQHGH-----GREALELFDQMVAQGIY 530

Query: 170 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFK----SPLCKDTTALTPLISMYCKCGDLED 225
           P+  S  ++L  C+H   +  G Q  + + +    SP       L  L+    + G+  D
Sbjct: 531 PDRISFLTILTACNHAGLVDDGFQYFESMERDFGISPGEDHYARLIDLLGRAGRIGEARD 590

Query: 226 ACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKM 264
             K  +  +    + W A++SG   +G  E      D++
Sbjct: 591 LIKT-MPFEPTPAI-WEAILSGCRINGDMELGAYAADQL 627


>gi|359477907|ref|XP_002270439.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Vitis vinifera]
          Length = 677

 Score =  452 bits (1164), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 222/492 (45%), Positives = 313/492 (63%), Gaps = 10/492 (2%)

Query: 58  AFDFFQRLPIKDTAS----WNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE 113
               F   P ++ A     WN +I+G  +  +++KA  LF AMPE+N+ SW+++I+G++ 
Sbjct: 192 GLQLFDESPQRNKAESILLWNVLINGCCKVGDLSKAASLFEAMPERNAGSWNSLINGFVR 251

Query: 114 CGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNAS 173
            G LD+A ELF   P K+VV+WT MI+G+      +N   E  L +   M+  G+RPN  
Sbjct: 252 NGDLDRARELFVQMPEKNVVSWTTMINGFS-----QNGDHEKALSMFWRMLEEGVRPNDL 306

Query: 174 SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI 233
           ++ S LL C+ + +LQ+G+++H  +  +    +    T L+ MY KCG+++ A ++F+E 
Sbjct: 307 TVVSALLACTKIGALQVGERIHNYLSSNGFQLNRGIGTALVDMYAKCGNIKSASRVFVET 366

Query: 234 QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGI 293
           + KD++TW+ MI G+A HG  ++AL+ F KMK  G+ PD + F+A+L AC+H+G VD G+
Sbjct: 367 KGKDLLTWSVMIWGWAIHGCFDQALQCFVKMKSAGINPDEVIFLAILTACSHSGNVDQGL 426

Query: 294 QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRV 353
            +F+SM  DY I     HYT +VDLLGRAG+L EA+  I+ MP  P   I+G L  ACR 
Sbjct: 427 NFFESMRLDYSIEPTMKHYTLIVDLLGRAGRLDEALSFIQSMPINPDFVIWGALFCACRA 486

Query: 354 HKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGY 413
           HK +++AE  A  L  L P +  G YV L+N+YAA+ +W+DV R+R  MK   V K PG+
Sbjct: 487 HKNIEMAELTAEKLLQLEPKH-PGSYVFLSNVYAAVGRWEDVERVRTLMKNRGVEKDPGW 545

Query: 414 SWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQL 473
           S+IEV   VH F +GD  H     I  KL+E+    K  GY+P+  + LH + EE KE  
Sbjct: 546 SYIEVEGQVHSFVAGDHAHVRAEEISLKLEEITASAKQEGYMPETAWVLHNIEEEEKEDA 605

Query: 474 LLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHH 533
           L  HSEKLA+AFGLI    G+ IR+ KNLRVCGDCH   KY S + +REII+RD  RFHH
Sbjct: 606 LGSHSEKLALAFGLISTAPGSTIRIVKNLRVCGDCHSMMKYASKLSRREIILRDIKRFHH 665

Query: 534 FKDGTCSCGDYW 545
           FKDGTCSCGDYW
Sbjct: 666 FKDGTCSCGDYW 677



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 72/303 (23%), Positives = 121/303 (39%), Gaps = 72/303 (23%)

Query: 92  LFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENS 151
           +FL     NS   + +IS       LD A+ +F+     ++  + A+I G       ENS
Sbjct: 63  IFLHNLFSNSRVVTQLISSSCSLKSLDYALSIFRCFDHPNLFVFNALIRGL-----AENS 117

Query: 152 WAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALT 211
             E  +    +M+ L IRP+  +L  VL   + L  + LG+ +H  V K  L  D+    
Sbjct: 118 RFEGSVSHFVLMLRLSIRPDRLTLPFVLKSVAALVDVGLGRCLHGGVMKLGLEFDSFVRV 177

Query: 212 PLISMYC-----------------------------------KCGDLEDACKLFLEIQRK 236
            L+ MY                                    K GDL  A  LF  +  +
Sbjct: 178 SLVDMYVKIGELGFGLQLFDESPQRNKAESILLWNVLINGCCKVGDLSKAASLFEAMPER 237

Query: 237 DVVTWNAMISGY-------------------------------AQHGKGEKALRLFDKMK 265
           +  +WN++I+G+                               +Q+G  EKAL +F +M 
Sbjct: 238 NAGSWNSLINGFVRNGDLDRARELFVQMPEKNVVSWTTMINGFSQNGDHEKALSMFWRML 297

Query: 266 DEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKL 325
           +EG++P+ +T V+ LLAC   G + +G +   + ++  G        T +VD+  + G +
Sbjct: 298 EEGVRPNDLTVVSALLACTKIGALQVG-ERIHNYLSSNGFQLNRGIGTALVDMYAKCGNI 356

Query: 326 VEA 328
             A
Sbjct: 357 KSA 359



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 73/280 (26%), Positives = 123/280 (43%), Gaps = 48/280 (17%)

Query: 193 QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHG 252
           Q+H  +F   L  ++  +T LIS  C    L+ A  +F      ++  +NA+I G A++ 
Sbjct: 58  QIHAQIFLHNLFSNSRVVTQLISSSCSLKSLDYALSIFRCFDHPNLFVFNALIRGLAENS 117

Query: 253 KGEKALRLFDKMKDEGMKPDSITF------VALLL-----ACNHAGLVDLGIQYFDSMVN 301
           + E ++  F  M    ++PD +T       VA L+      C H G++ LG++ FDS V 
Sbjct: 118 RFEGSVSHFVLMLRLSIRPDRLTLPFVLKSVAALVDVGLGRCLHGGVMKLGLE-FDSFVR 176

Query: 302 DYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPA---IFGTLLSACRVHKRLD 358
                        +VD+  + G+L   + L  + P + +     ++  L++ C   K  D
Sbjct: 177 -----------VSLVDMYVKIGELGFGLQLFDESPQRNKAESILLWNVLINGC--CKVGD 223

Query: 359 LAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEV 418
           L++  A +LF   P   AG +  L N +      D    + + M E NVV     SW   
Sbjct: 224 LSK--AASLFEAMPERNAGSWNSLINGFVRNGDLDRARELFVQMPEKNVV-----SWT-- 274

Query: 419 GTVVHEF-RSGDRVHPELVSIHEKLKELEKRMKLAGYVPD 457
            T+++ F ++GD         HEK   +  RM   G  P+
Sbjct: 275 -TMINGFSQNGD---------HEKALSMFWRMLEEGVRPN 304



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 66/297 (22%), Positives = 123/297 (41%), Gaps = 26/297 (8%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  +   +WNS++ GF +  G L  A+ELF ++P+ +VVS+  M++    N D   A   
Sbjct: 234 MPERNAGSWNSLINGFVRN-GDLDRARELFVQMPEKNVVSWTTMINGFSQNGDHEKALSM 292

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK------------NSVSWSAMI 108
           F++ L      +  T++S  +    +       L + E+            N    +A++
Sbjct: 293 FWRMLEEGVRPNDLTVVSALLACTKIGA-----LQVGERIHNYLSSNGFQLNRGIGTALV 347

Query: 109 SGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGI 168
             Y +CG +  A  +F     K ++ W+ MI G+   G  + +     L+    M   GI
Sbjct: 348 DMYAKCGNIKSASRVFVETKGKDLLTWSVMIWGWAIHGCFDQA-----LQCFVKMKSAGI 402

Query: 169 RPNASSLSSVLLGCSHLSSLQLGKQVHQ-LVFKSPLCKDTTALTPLISMYCKCGDLEDAC 227
            P+     ++L  CSH  ++  G    + +     +       T ++ +  + G L++A 
Sbjct: 403 NPDEVIFLAILTACSHSGNVDQGLNFFESMRLDYSIEPTMKHYTLIVDLLGRAGRLDEAL 462

Query: 228 KLFLEIQ-RKDVVTWNAMISGYAQHGKGEKALRLFDK-MKDEGMKPDSITFVALLLA 282
                +    D V W A+      H   E A    +K ++ E   P S  F++ + A
Sbjct: 463 SFIQSMPINPDFVIWGALFCACRAHKNIEMAELTAEKLLQLEPKHPGSYVFLSNVYA 519


>gi|357507065|ref|XP_003623821.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498836|gb|AES80039.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 837

 Score =  452 bits (1164), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 235/546 (43%), Positives = 337/546 (61%), Gaps = 11/546 (2%)

Query: 5   TTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNS--DDVVAAFDFF 62
           + V   S L     + G LK+A+ + + +   DVVS+N ++   + +   ++ +  F   
Sbjct: 298 SNVYVQSALVDMYAKCGDLKNAKNMLETMEDDDVVSWNSLMVGFVRHGLEEEALRLFKNM 357

Query: 63  --QRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKN-SVSWSAMISGYIECGQLDK 119
             + + I D    + +    V   N      L +    +N  +  +A++  Y + G +D 
Sbjct: 358 HGRNMKIDDYTFPSVLNCCVVGSINPKSVHGLIIKTGFENYKLVSNALVDMYAKTGDMDC 417

Query: 120 AVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVL 179
           A  +F+    K V++WT++++GY      +N+  E+ LK+   M   G+ P+   ++S+L
Sbjct: 418 AYTVFEKMLEKDVISWTSLVTGY-----AQNNSHEESLKIFCDMRVTGVNPDQFIVASIL 472

Query: 180 LGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVV 239
             C+ L+ L+ GKQVH    KS L    +    L++MY KCG L+DA  +F+ +Q KDV+
Sbjct: 473 SACAELTLLEFGKQVHLDFIKSGLRWSQSVYNSLVAMYAKCGCLDDADAIFVSMQVKDVI 532

Query: 240 TWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSM 299
           TW A+I GYAQ+GKG  +L+ +D M   G +PD ITF+ LL AC+HAGLVD G +YF  M
Sbjct: 533 TWTAIIVGYAQNGKGRNSLKFYDAMVSSGTRPDFITFIGLLFACSHAGLVDEGRKYFQQM 592

Query: 300 VNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDL 359
              YGI   P+HY CM+DL GR+GKL EA  L+ +M  KP   ++ +LLSACRVH+ L+L
Sbjct: 593 NKVYGIKPGPEHYACMIDLFGRSGKLDEAKQLLDQMDVKPDATVWKSLLSACRVHENLEL 652

Query: 360 AEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVG 419
           AE AA NLF L P NA   YV L+N+Y+A +KW+DVA+IR  MK   +VK PG SW+E+ 
Sbjct: 653 AERAATNLFELEPMNAMP-YVMLSNMYSASRKWNDVAKIRKLMKSKGIVKEPGCSWLEIN 711

Query: 420 TVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSE 479
           + V+ F S DR HP    I+ K+ E+  R+K AGYVPD+ F+LH + +E KE  L +HSE
Sbjct: 712 SRVNTFISDDRGHPREAEIYTKIDEIILRIKEAGYVPDMSFSLHDMDKEGKEVGLAYHSE 771

Query: 480 KLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTC 539
           KLA+AFGL+  P   PIR+FKNLRVCGDCH A KYIS +  R II+RD+  FHHF++G C
Sbjct: 772 KLAVAFGLLAAPPSAPIRIFKNLRVCGDCHSAMKYISRVFTRHIILRDSNCFHHFREGEC 831

Query: 540 SCGDYW 545
           SCGDYW
Sbjct: 832 SCGDYW 837



 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 118/471 (25%), Positives = 202/471 (42%), Gaps = 79/471 (16%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
           N +L   +K  G++ DA++LFDK+PQ D  S+N M+S   +N   +V A + F     K 
Sbjct: 69  NQLLNQLSKS-GQVNDARKLFDKMPQKDEYSWNTMISS-YVNVGRLVEARELFDGCSCKS 126

Query: 70  TASWNTMISGFVQKKNMAKARDLFLAMP-------------------------------- 97
           + +W+++ISG+ +     +A DLF +M                                 
Sbjct: 127 SITWSSIISGYCKFGCKVEAFDLFRSMRLEGWKASQFTLGSVLRVCSSLGLIQTGEMIHG 186

Query: 98  -------EKNSVSWSAMISGYIECGQLDKAVELFKVAPV--KSVVAWTAMISGYMKFGYV 148
                  E N    + ++  Y +C  + +A  LFK      K+ V WTAM++GY      
Sbjct: 187 FVVKNGFEGNVFVVTGLVDMYAKCKCVSEAEFLFKGLEFDRKNHVLWTAMVTGY-----A 241

Query: 149 ENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTT 208
           +N      ++  R M   G+  N  +  ++L  CS + +   G+QVH  + KS    +  
Sbjct: 242 QNGDGYKAVEFFRYMHAQGVECNQYTFPTILTACSSVLARCFGEQVHGFIVKSGFGSNVY 301

Query: 209 ALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEG 268
             + L+ MY KCGDL++A  +   ++  DVV+WN+++ G+ +HG  E+ALRLF  M    
Sbjct: 302 VQSALVDMYAKCGDLKNAKNMLETMEDDDVVSWNSLMVGFVRHGLEEEALRLFKNMHGRN 361

Query: 269 MKPDSITFVALLLAC---------NHAGLVDLGIQYF----DSMVNDYGIAAKPD----- 310
           MK D  TF ++L  C          H  ++  G + +    +++V+ Y      D     
Sbjct: 362 MKIDDYTFPSVLNCCVVGSINPKSVHGLIIKTGFENYKLVSNALVDMYAKTGDMDCAYTV 421

Query: 311 ----------HYTCMVDLLGRAGKLVEAVDLIKKM---PFKPQPAIFGTLLSACRVHKRL 357
                      +T +V    +     E++ +   M      P   I  ++LSAC     L
Sbjct: 422 FEKMLEKDVISWTSLVTGYAQNNSHEESLKIFCDMRVTGVNPDQFIVASILSACAELTLL 481

Query: 358 DLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVV 408
           +  +   ++        +   Y  L  +YA     DD   I +SM+  +V+
Sbjct: 482 EFGKQVHLDFIKSGLRWSQSVYNSLVAMYAKCGCLDDADAIFVSMQVKDVI 532


>gi|168003497|ref|XP_001754449.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162694551|gb|EDQ80899.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 723

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 227/532 (42%), Positives = 325/532 (61%), Gaps = 46/532 (8%)

Query: 54  DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMIS 109
           D+  A   F RLP K+  +W  +I+G+ Q+  +  A +L   M +     N +++++++ 
Sbjct: 198 DISKARVIFDRLPEKNVVTWTLLIAGYAQQGQVDVALELLETMQQAEVAPNKITFASILQ 257

Query: 110 G-----------------------------------YIECGQLDKAVELFKVAPVKSVVA 134
           G                                   Y +CG L++A +LF   P + VV 
Sbjct: 258 GCTTPAALEHGKKVHRYIIQSGYGRELWVVNSLITMYCKCGGLEEARKLFSDLPHRDVVT 317

Query: 135 WTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQV 194
           WTAM++GY + G+      ++ + L R M   GI+P+  + +SVL  CS  + LQ GK++
Sbjct: 318 WTAMVTGYAQLGF-----HDEAINLFRRMQQQGIKPDKMTFTSVLTSCSSPAFLQEGKRI 372

Query: 195 HQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGY-AQHGK 253
           HQ +  +    D    + L+SMY KCG ++DA  +F ++  ++VV W A+I+G  AQHG+
Sbjct: 373 HQQLVHAGYNLDVYLQSALVSMYAKCGSMDDASLVFNQMSERNVVAWTAIITGCCAQHGR 432

Query: 254 GEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYT 313
             +AL  FD+MK +G+KPD +TF ++L AC H GLV+ G ++F SM  DYGI    +HY+
Sbjct: 433 CREALEYFDQMKKQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEHYS 492

Query: 314 CMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPA 373
           C VDLLGRAG L EA ++I  MPF P P+++G LLSACRVH  ++  E AA N+  L+P 
Sbjct: 493 CFVDLLGRAGHLEEAENVILSMPFIPGPSVWGALLSACRVHSDVERGERAAENVLKLDPD 552

Query: 374 NAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHP 433
           +  G YV L++IYAA  +++D  ++R  M++ +VVK PG SWIEV   VH F   D+ HP
Sbjct: 553 DD-GAYVALSSIYAAAGRYEDAEKVRQVMEKRDVVKEPGQSWIEVDGKVHVFHVEDKSHP 611

Query: 434 ELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLG 493
           E   I+ +L +L +++K  GYVPD  F LH V EE KE++L  HSE+LAI +GL+K P G
Sbjct: 612 ESEQIYVELGKLTEQIKEMGYVPDTRFVLHDVDEEQKERILFSHSERLAITYGLMKTPPG 671

Query: 494 TPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
            PIR+ KNLRVCGDCH ATK+IS +  REII RD  RFHHF DG CSCGD+W
Sbjct: 672 MPIRIVKNLRVCGDCHTATKFISKVVGREIIARDAQRFHHFADGVCSCGDFW 723



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 110/385 (28%), Positives = 202/385 (52%), Gaps = 51/385 (13%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK- 68
           N++L+ +AK  G L DA+ +FD I   ++VS+  M+   +  + + + AF  ++ + +  
Sbjct: 86  NTLLSMYAKC-GSLTDARRVFDSIRDRNIVSWTAMIEAFVAGNKN-LEAFKCYETMKLAG 143

Query: 69  ---DTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISGYIECGQLDKAV 121
              D  ++ ++++ F   + +   + + + + E          ++++  Y +CG + KA 
Sbjct: 144 CKPDKVTFVSLLNAFTNPELLQLGQKVHMEIVEAGLELEPRVGTSLVGMYAKCGDISKAR 203

Query: 122 ELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLG 181
            +F   P K+VV WT +I+GY + G V+ +     L+LL  M    + PN  + +S+L G
Sbjct: 204 VIFDRLPEKNVVTWTLLIAGYAQQGQVDVA-----LELLETMQQAEVAPNKITFASILQG 258

Query: 182 CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTW 241
           C+  ++L+ GK+VH+ + +S   ++   +  LI+MYCKCG LE+A KLF ++  +DVVTW
Sbjct: 259 CTTPAALEHGKKVHRYIIQSGYGRELWVVNSLITMYCKCGGLEEARKLFSDLPHRDVVTW 318

Query: 242 NAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN----------------H 285
            AM++GYAQ G  ++A+ LF +M+ +G+KPD +TF ++L +C+                H
Sbjct: 319 TAMVTGYAQLGFHDEAINLFRRMQQQGIKPDKMTFTSVLTSCSSPAFLQEGKRIHQQLVH 378

Query: 286 AGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLL-------------------GRAGKLV 326
           AG  +L +    ++V+ Y      D  + + + +                   GR  + +
Sbjct: 379 AGY-NLDVYLQSALVSMYAKCGSMDDASLVFNQMSERNVVAWTAIITGCCAQHGRCREAL 437

Query: 327 EAVDLIKKMPFKPQPAIFGTLLSAC 351
           E  D +KK   KP    F ++LSAC
Sbjct: 438 EYFDQMKKQGIKPDKVTFTSVLSAC 462



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 102/414 (24%), Positives = 186/414 (44%), Gaps = 70/414 (16%)

Query: 48  ILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQK----KNMAKARDLFLAM----PEK 99
           +L  +  +  A      + ++ T  ++ +  G +Q+    +++ + R++  A+     + 
Sbjct: 21  VLCKTGRLKEALGIMNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGIQP 80

Query: 100 NSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKL 159
           N    + ++S Y +CG L  A  +F     +++V+WTAMI  +     V  +   +  K 
Sbjct: 81  NRYLENTLLSMYAKCGSLTDARRVFDSIRDRNIVSWTAMIEAF-----VAGNKNLEAFKC 135

Query: 160 LRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCK 219
              M   G +P+  +  S+L   ++   LQLG++VH  + ++ L  +    T L+ MY K
Sbjct: 136 YETMKLAGCKPDKVTFVSLLNAFTNPELLQLGQKVHMEIVEAGLELEPRVGTSLVGMYAK 195

Query: 220 CGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVAL 279
           CGD+  A  +F  +  K+VVTW  +I+GYAQ G+ + AL L + M+   + P+ ITF ++
Sbjct: 196 CGDISKARVIFDRLPEKNVVTWTLLIAGYAQQGQVDVALELLETMQQAEVAPNKITFASI 255

Query: 280 LLACNHAGLVDLG-------IQ--------YFDSMVNDYGIAAKPDH------------- 311
           L  C     ++ G       IQ          +S++  Y      +              
Sbjct: 256 LQGCTTPAALEHGKKVHRYIIQSGYGRELWVVNSLITMYCKCGGLEEARKLFSDLPHRDV 315

Query: 312 --YTCMVDLLGRAGKLVEAVDLIKKMP---FKPQPAIFGTLLSAC----------RVHKR 356
             +T MV    + G   EA++L ++M     KP    F ++L++C          R+H++
Sbjct: 316 VTWTAMVTGYAQLGFHDEAINLFRRMQQQGIKPDKMTFTSVLTSCSSPAFLQEGKRIHQQ 375

Query: 357 LDLAEFAAMNLFNLNPANAAGCYVQ--LANIYAAMKKWDDVARIRLSMKENNVV 408
           L  A       +NL+       Y+Q  L ++YA     DD + +   M E NVV
Sbjct: 376 LVHAG------YNLD------VYLQSALVSMYAKCGSMDDASLVFNQMSERNVV 417


>gi|224108621|ref|XP_002314911.1| predicted protein [Populus trichocarpa]
 gi|222863951|gb|EEF01082.1| predicted protein [Populus trichocarpa]
          Length = 743

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 240/574 (41%), Positives = 345/574 (60%), Gaps = 46/574 (8%)

Query: 11  SVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDT 70
           S L     + G +  A ++FD++ + +VV YN M++  LL S  V  +   F  +  +D+
Sbjct: 177 SSLVDMYAKMGLVSVASQVFDEVQERNVVMYNTMITG-LLRSGMVKDSKRLFHGMKERDS 235

Query: 71  ASWNTMISGFVQKKNMAKARDLFLAMPEK------------------------------- 99
            SW TMI+G +Q    A+A DLF  M ++                               
Sbjct: 236 ISWTTMITGLIQNGLEAEAMDLFRDMRQEGMAMDQYTFGSVLTACGGLRALKEGKEIHTL 295

Query: 100 --------NSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENS 151
                   N    SA++  Y +C  +  A  +FK    K+VV+WTAM+      GY +N 
Sbjct: 296 IIRSGYNHNVFVGSALVDMYCKCRSVRYAEAVFKRMANKNVVSWTAML-----VGYGQNG 350

Query: 152 WAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALT 211
           ++E+ +++   M   GI P+  +L SV+  C++L+SL+ G Q H     S L    T   
Sbjct: 351 FSEEAVRVFCDMQRNGIEPDDFTLGSVISSCANLASLEEGAQFHCQALVSGLISFITVSN 410

Query: 212 PLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKP 271
            LI++Y KCG +ED+ +LF E+  +D V+W A++SGYAQ GK  + + LF++M  +G+KP
Sbjct: 411 ALITLYGKCGSIEDSNQLFDEMSFRDEVSWTALVSGYAQFGKANETIDLFERMLVQGLKP 470

Query: 272 DSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDL 331
           D++TF+A+L AC+ AGLV+ G QYF+SM+ D+GI    DHYTCM+DL GRAG+L EA + 
Sbjct: 471 DAVTFIAVLSACSRAGLVERGQQYFESMLKDHGIIPFSDHYTCMIDLFGRAGRLEEAKNF 530

Query: 332 IKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKK 391
           I KMPF P    + TLLS+CR++   ++ ++AA +L  L+P N AG Y+ L++IYAA  K
Sbjct: 531 INKMPFSPDSIGWATLLSSCRLYGNEEIGKWAAESLLELDPQNPAG-YILLSSIYAAKGK 589

Query: 392 WDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKL 451
           W +VA++R  M+E    K PG+SWI+  + V+ F + D+  P    I+ +L++L  +M  
Sbjct: 590 WSNVAQLRRGMREKGARKEPGFSWIKYKSKVYIFSADDQSSPFSDQIYAELEKLNHKMIE 649

Query: 452 AGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRA 511
            GYVPD    LH V +  K ++L  HSEKLAIAFGL+ +P G PIRV KNLRVCGDCH A
Sbjct: 650 EGYVPDASSVLHDVEDSEKMKMLNHHSEKLAIAFGLLFIPHGLPIRVVKNLRVCGDCHNA 709

Query: 512 TKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           TKYIS I +REI+VRD  RFH FKDGTCSCGD+W
Sbjct: 710 TKYISKISQREILVRDAVRFHLFKDGTCSCGDFW 743



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 76/251 (30%), Positives = 127/251 (50%), Gaps = 23/251 (9%)

Query: 69  DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAP 128
           +T  +N +I+ + +  N+  AR +F  MP+ NS SW+ M+S Y + G L    E+F + P
Sbjct: 39  ETFLYNNLINAYSKLGNITYARHVFDKMPQPNSFSWNTMLSAYSKSGDLSTMQEIFSIMP 98

Query: 129 VKSVVAWTAMISGYMKFGYV------ENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGC 182
            +  V+W ++ISGY+ +G V       NS  +DG+          +  N  + S++LL  
Sbjct: 99  NRDGVSWNSLISGYVCYGSVVEAVKTYNSMMKDGV----------LNLNRITFSTMLLLV 148

Query: 183 SHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWN 242
           S    + LG+Q+H  + K          + L+ MY K G +  A ++F E+Q ++VV +N
Sbjct: 149 SSQGCVDLGRQIHGQIVKFGFGAYVFVGSSLVDMYAKMGLVSVASQVFDEVQERNVVMYN 208

Query: 243 AMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVND 302
            MI+G  + G  + + RLF  MK+     DSI++  ++      GL    +  F  M  +
Sbjct: 209 TMITGLLRSGMVKDSKRLFHGMKER----DSISWTTMITGLIQNGLEAEAMDLFRDMRQE 264

Query: 303 YGIAAKPDHYT 313
            G+A   D YT
Sbjct: 265 -GMAM--DQYT 272



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 73/174 (41%), Gaps = 33/174 (18%)

Query: 182 CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTW 241
           C    +    K++H L+ KS    +T     LI+ Y K G++  A  +F ++ + +  +W
Sbjct: 15  CCETRNQTQAKKLHCLIIKSLTNPETFLYNNLINAYSKLGNITYARHVFDKMPQPNSFSW 74

Query: 242 NAMI-------------------------------SGYAQHGKGEKALRLFDK-MKDEGM 269
           N M+                               SGY  +G   +A++ ++  MKD  +
Sbjct: 75  NTMLSAYSKSGDLSTMQEIFSIMPNRDGVSWNSLISGYVCYGSVVEAVKTYNSMMKDGVL 134

Query: 270 KPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAG 323
             + ITF  +LL  +  G VDLG Q    +V  +G  A     + +VD+  + G
Sbjct: 135 NLNRITFSTMLLLVSSQGCVDLGRQIHGQIVK-FGFGAYVFVGSSLVDMYAKMG 187


>gi|168056582|ref|XP_001780298.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668246|gb|EDQ54857.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 986

 Score =  449 bits (1154), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 240/549 (43%), Positives = 342/549 (62%), Gaps = 27/549 (4%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNS--DDVVAAFDFFQRLPI 67
            ++L+ +AK  G LKDA  +F+KI + +VV++N M++  + +   D+ +A F    +  I
Sbjct: 452 TALLSMYAKC-GSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGI 510

Query: 68  KDTASWNTMISGFVQKKNMAKARDL--------FLAMP---EKNSVSWSAMISGYIECGQ 116
           K  +S       F    N+ K+ D         FL M    E +    +A++S ++ CG 
Sbjct: 511 KPNSS------TFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGD 564

Query: 117 LDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLS 176
           L  A  LF   P + +V+W  +I+G+++ G  +N  A D  K   MM   GI+P+  + +
Sbjct: 565 LMSAKNLFNDMPKRDLVSWNTIIAGFVQHG--KNQVAFDYFK---MMQESGIKPDKITFT 619

Query: 177 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK 236
            +L  C+   +L  G+++H L+ ++    D    T LISMY KCG +EDA ++F ++ +K
Sbjct: 620 GLLNACASPEALTEGRRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKK 679

Query: 237 DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYF 296
           +V +W +MI+GYAQHG+G++AL LF +M+ EG+KPD ITFV  L AC HAGL++ G+ +F
Sbjct: 680 NVYSWTSMITGYAQHGRGKEALELFYQMQQEGVKPDWITFVGALSACAHAGLIEEGLHHF 739

Query: 297 DSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKR 356
            SM  ++ I  + +HY CMVDL GRAG L EAV+ I KM  +P   ++G LL AC+VH  
Sbjct: 740 QSM-KEFNIEPRMEHYGCMVDLFGRAGLLNEAVEFIIKMQVEPDSRVWGALLGACQVHLN 798

Query: 357 LDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWI 416
           ++LAE AA     L+P N  G +V L+NIYAA   W +VA++R  M +  VVK PG SWI
Sbjct: 799 VELAEKAAQKKLELDP-NDNGVFVILSNIYAAAGMWKEVAKMRKVMLDRGVVKKPGQSWI 857

Query: 417 EVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLF 476
           EV   VH F S D+ HP+   IH +L+ L   M+  GYVPD  + LH V +  KEQ L +
Sbjct: 858 EVDGKVHTFYSDDKTHPQTEEIHAELERLHMEMRQLGYVPDTRYVLHDVEDNEKEQALFY 917

Query: 477 HSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKD 536
           HSE+LAI +GL+K P  TPI + KNLRVCGDCH ATK+IS I KR+II RD+ RFHHFKD
Sbjct: 918 HSERLAITYGLLKTPPLTPIVISKNLRVCGDCHTATKFISKITKRQIIARDSNRFHHFKD 977

Query: 537 GTCSCGDYW 545
           G CSCGD+W
Sbjct: 978 GVCSCGDFW 986



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 96/327 (29%), Positives = 175/327 (53%), Gaps = 21/327 (6%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK----DTASWNTM 76
           G + DA ++FD +P  D+V++  M++  L        A + FQR+  +    D  ++ ++
Sbjct: 260 GDIGDATKVFDNLPTRDLVTWTSMITG-LARHGRFKQACNLFQRMEEEGVQPDKVAFVSL 318

Query: 77  ISGFVQKKNMAKARDLFLAMPEKNSVSW-------SAMISGYIECGQLDKAVELFKVAPV 129
           +      + + + + +   M E   V W       +A++S Y +CG ++ A+E+F +   
Sbjct: 319 LRACNHPEALEQGKKVHARMKE---VGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKG 375

Query: 130 KSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQ 189
           ++VV+WTAMI+G+ + G ++ ++          MI  GI PN  +  S+L  CS  S+L+
Sbjct: 376 RNVVSWTAMIAGFAQHGRIDEAFL-----FFNKMIESGIEPNRVTFMSILGACSSPSALK 430

Query: 190 LGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYA 249
            G+Q+   + ++    D    T L+SMY KCG L+DA ++F +I +++VV WNAMI+ Y 
Sbjct: 431 RGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYV 490

Query: 250 QHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKP 309
           QH + + AL  F  +  EG+KP+S TF ++L  C  +  ++LG ++   ++   G+ +  
Sbjct: 491 QHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELG-KWVHFLIMKAGLESDL 549

Query: 310 DHYTCMVDLLGRAGKLVEAVDLIKKMP 336
                +V +    G L+ A +L   MP
Sbjct: 550 HVSNALVSMFVNCGDLMSAKNLFNDMP 576



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 88/338 (26%), Positives = 155/338 (45%), Gaps = 38/338 (11%)

Query: 104 WSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMM 163
           W+ +I+ Y +CG    A ++F     K V +W  ++ GY++ G  E     +  KL   M
Sbjct: 148 WNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYE-----EAFKLHEQM 202

Query: 164 IGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDL 223
           +   ++P+  +  S+L  C+   ++  G++++ L+ K+    D    T LI+M+ KCGD+
Sbjct: 203 VQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDI 262

Query: 224 EDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC 283
            DA K+F  +  +D+VTW +MI+G A+HG+ ++A  LF +M++EG++PD + FV+LL AC
Sbjct: 263 GDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRAC 322

Query: 284 NHAGLVDLGIQYFDSM------------------------------VNDYGIAAKPDHYT 313
           NH   ++ G +    M                              V D         +T
Sbjct: 323 NHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWT 382

Query: 314 CMVDLLGRAGKLVEAVDLIKKM---PFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNL 370
            M+    + G++ EA     KM     +P    F ++L AC     L   +    ++   
Sbjct: 383 AMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEA 442

Query: 371 NPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVV 408
              +       L ++YA      D  R+   + + NVV
Sbjct: 443 GYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVV 480



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/230 (28%), Positives = 115/230 (50%), Gaps = 33/230 (14%)

Query: 155 DGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLI 214
           + +++L  +    I+    + S++L  C    +L  G++++  + KS +  D      LI
Sbjct: 93  EAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGERIYNHIKKSGVQPDIFMWNTLI 152

Query: 215 SMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSI 274
           +MY KCG+   A ++F +++ KDV +WN ++ GY QHG  E+A +L ++M  + +KPD  
Sbjct: 153 NMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKR 212

Query: 275 TFVALLLACNHAGLVDLGIQYFD---------------SMVN------DYGIAAK----- 308
           TFV++L AC  A  VD G + ++               +++N      D G A K     
Sbjct: 213 TFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNL 272

Query: 309 PDH----YTCMVDLLGRAGKLVEAVDLIKKMP---FKPQPAIFGTLLSAC 351
           P      +T M+  L R G+  +A +L ++M     +P    F +LL AC
Sbjct: 273 PTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRAC 322



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 73/332 (21%), Positives = 132/332 (39%), Gaps = 61/332 (18%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQ----PDVVSYNIMLSCIL------- 49
           M  +  V+WN+++AGF  Q GK + A + F  + +    PD +++  +L+          
Sbjct: 575 MPKRDLVSWNTIIAGFV-QHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTE 633

Query: 50  ---LNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSA 106
              L++    AAFD        D      +IS + +  ++  A  +F  +P+KN  SW++
Sbjct: 634 GRRLHALITEAAFDC-------DVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTS 686

Query: 107 MISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGL 166
           MI+GY + G+  +A+ELF                                      M   
Sbjct: 687 MITGYAQHGRGKEALELF------------------------------------YQMQQE 710

Query: 167 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 226
           G++P+  +    L  C+H   ++ G    Q + +  +         ++ ++ + G L +A
Sbjct: 711 GVKPDWITFVGALSACAHAGLIEEGLHHFQSMKEFNIEPRMEHYGCMVDLFGRAGLLNEA 770

Query: 227 CKLFLEIQ-RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNH 285
            +  +++Q   D   W A++     H   E A +   K K E    D+  FV L      
Sbjct: 771 VEFIIKMQVEPDSRVWGALLGACQVHLNVELAEKAAQK-KLELDPNDNGVFVILSNIYAA 829

Query: 286 AGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVD 317
           AG+     +    M+ D G+  KP      VD
Sbjct: 830 AGMWKEVAKMRKVML-DRGVVKKPGQSWIEVD 860


>gi|115451769|ref|NP_001049485.1| Os03g0235200 [Oryza sativa Japonica Group]
 gi|108707037|gb|ABF94832.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113547956|dbj|BAF11399.1| Os03g0235200 [Oryza sativa Japonica Group]
 gi|125585525|gb|EAZ26189.1| hypothetical protein OsJ_10058 [Oryza sativa Japonica Group]
 gi|215706461|dbj|BAG93317.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 641

 Score =  449 bits (1154), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 235/587 (40%), Positives = 332/587 (56%), Gaps = 52/587 (8%)

Query: 5   TTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQR 64
           +TV  N +L   +     L DA  LF  I  PD+ S+N ++S +  +   + +A + F R
Sbjct: 61  STVLSNRLLHLLSSHPATLPDALALFSSIAAPDICSHNTLISALSRSPRHLPSARELFDR 120

Query: 65  LPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK------------------------- 99
           +P +D  +W+ ++SG+ +      A  L+  M E+                         
Sbjct: 121 MPQRDHFAWSALVSGYTRHGQPEAALALYRRMQEEPGNDGADNEFTASSALAAAAAARCG 180

Query: 100 --------------------NSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMI 139
                               ++V WSA+   Y +CG++D A  +F   PV+  V+WTAM+
Sbjct: 181 RAGRELHCHVVRRGIDAAGGDAVLWSALADMYAKCGRVDDARRVFDRMPVRDAVSWTAMV 240

Query: 140 SGYMKFGYVENSWAEDGLKL-LRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLV 198
             Y   G        +G +L L M+   G+RPN  + + VL  C+  +    G+QVH  +
Sbjct: 241 ERYFDGGR-----GGEGFRLFLHMLRTRGVRPNEFTYAGVLRACAQFAVESFGRQVHGRM 295

Query: 199 FKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKAL 258
            KS       A + L+ MY KCGD+  A ++F  + + D+V+W A+ISGYAQ+G+ E+AL
Sbjct: 296 AKSGTGDSCFAESALLRMYSKCGDMGSAVRVFEAMAKPDLVSWTAVISGYAQNGQPEEAL 355

Query: 259 RLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDL 318
           R FD     G+KPD +TFV +L AC HAGLVD G++ F S+   Y I    DHY C++DL
Sbjct: 356 RYFDMFLRSGIKPDHVTFVGVLSACAHAGLVDKGLEIFHSIKEQYCIEHTADHYACVIDL 415

Query: 319 LGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGC 378
           L R+G+   A  +I  M  KP   ++ +LL  CR+HK + LA  AA  LF + P N A  
Sbjct: 416 LSRSGQFERAEKMIGNMAVKPNKFLWASLLGGCRIHKNVGLARRAAEALFEIEPENPA-T 474

Query: 379 YVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSI 438
           YV LANIYA++  +D+V  +R  M+   + KMP  SWIEVG  VH F  GD+ HP+   I
Sbjct: 475 YVTLANIYASVGLFDEVEDVRRIMESKGITKMPASSWIEVGRRVHVFLVGDKSHPKADEI 534

Query: 439 HEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRV 498
           +  LK+L  +M   GYV D+EF LH V +E KEQ + +HSE+LA+AFG+I  P G+PI+V
Sbjct: 535 YALLKKLYVKMVEEGYVADIEFVLHDVEDEQKEQDIGYHSERLAVAFGIIATPEGSPIKV 594

Query: 499 FKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           FKNLR+CGDCH A K IS I +R+IIVRD+ RFHHFKDG CSC DYW
Sbjct: 595 FKNLRICGDCHAAIKLISQIVQRDIIVRDSNRFHHFKDGICSCRDYW 641


>gi|54695180|dbj|BAD67155.1| PpPPR_98 [Physcomitrella patens]
          Length = 986

 Score =  449 bits (1154), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 241/549 (43%), Positives = 343/549 (62%), Gaps = 27/549 (4%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNS--DDVVAAFDFFQRLPI 67
            ++L+ +AK  G LKDA  +F+KI + +VV++N M++  + +   D+ +A F    +  I
Sbjct: 452 TALLSMYAKC-GSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGI 510

Query: 68  KDTASWNTMISGFVQKKNMAKARDL--------FLAMP---EKNSVSWSAMISGYIECGQ 116
           K  +S  T I       N+ K+ D         FL M    E +    +A++S ++ CG 
Sbjct: 511 KPNSSTFTSIL------NVCKSSDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGD 564

Query: 117 LDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLS 176
           L  A  LF   P + +V+W  +I+G+++ G  +N  A D  K   MM   GI+P+  + +
Sbjct: 565 LMSAKNLFNDMPKRDLVSWNTIIAGFVQHG--KNQVAFDYFK---MMQESGIKPDKITFT 619

Query: 177 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK 236
            +L  C+   +L  G+++H L+ ++    D    T LISMY KCG +EDA ++F ++ +K
Sbjct: 620 GLLNACASPEALTEGRRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKK 679

Query: 237 DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYF 296
           +V +W +MI+GYAQHG+G++AL LF +M+ EG+KPD ITFV  L AC HAGL++ G+ +F
Sbjct: 680 NVYSWTSMIAGYAQHGRGKEALELFYQMQQEGVKPDWITFVGALSACAHAGLIEEGLHHF 739

Query: 297 DSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKR 356
            SM  ++ I  + +HY CMVDL GRAG L EAV+ I KM  +P   ++G LL AC+VH  
Sbjct: 740 QSM-KEFNIEPRMEHYGCMVDLFGRAGLLNEAVEFIIKMQVEPDSRVWGALLGACQVHLN 798

Query: 357 LDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWI 416
           ++LAE AA     L+P N  G +V L+NIYAA   W +VA++R  M +  VVK PG SWI
Sbjct: 799 VELAEKAAQKKLELDP-NDNGVFVILSNIYAAAGMWKEVAKMRKVMLDRGVVKKPGQSWI 857

Query: 417 EVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLF 476
           EV   VH F S D+ HP+   IH +L+ L   M+  GYVPD  + LH V +  KEQ L +
Sbjct: 858 EVDGKVHTFYSDDKTHPQTEEIHAELERLHMEMRQLGYVPDTRYVLHDVEDNEKEQALFY 917

Query: 477 HSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKD 536
           HSE+LAI +GL+K P  TPI + KNLRVCGDCH ATK+IS I KR+II RD+ RFHHFKD
Sbjct: 918 HSERLAITYGLLKTPPLTPIVISKNLRVCGDCHTATKFISKITKRQIIARDSNRFHHFKD 977

Query: 537 GTCSCGDYW 545
           G CSCGD+W
Sbjct: 978 GVCSCGDFW 986



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 96/327 (29%), Positives = 175/327 (53%), Gaps = 21/327 (6%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK----DTASWNTM 76
           G + DA ++FD +P  D+V++  M++  L        A + FQR+  +    D  ++ ++
Sbjct: 260 GDIGDATKVFDNLPTRDLVTWTSMITG-LARHGRFKQACNLFQRMEEEGVQPDKVAFVSL 318

Query: 77  ISGFVQKKNMAKARDLFLAMPEKNSVSW-------SAMISGYIECGQLDKAVELFKVAPV 129
           +      + + + + +   M E   V W       +A++S Y +CG ++ A+E+F +   
Sbjct: 319 LRACNHPEALEQGKKVHARMKE---VGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKG 375

Query: 130 KSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQ 189
           ++VV+WTAMI+G+ + G ++ ++          MI  GI PN  +  S+L  CS  S+L+
Sbjct: 376 RNVVSWTAMIAGFAQHGRIDEAFL-----FFNKMIESGIEPNRVTFMSILGACSSPSALK 430

Query: 190 LGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYA 249
            G+Q+   + ++    D    T L+SMY KCG L+DA ++F +I +++VV WNAMI+ Y 
Sbjct: 431 RGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYV 490

Query: 250 QHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKP 309
           QH + + AL  F  +  EG+KP+S TF ++L  C  +  ++LG ++   ++   G+ +  
Sbjct: 491 QHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELG-KWVHFLIMKAGLESDL 549

Query: 310 DHYTCMVDLLGRAGKLVEAVDLIKKMP 336
                +V +    G L+ A +L   MP
Sbjct: 550 HVSNALVSMFVNCGDLMSAKNLFNDMP 576



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 87/337 (25%), Positives = 154/337 (45%), Gaps = 38/337 (11%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI 164
           + +I+ Y +CG    A ++F     K V +W  ++ GY++ G  E     +  KL   M+
Sbjct: 149 NTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYE-----EAFKLHEQMV 203

Query: 165 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 224
              ++P+  +  S+L  C+   ++  G++++ L+ K+    D    T LI+M+ KCGD+ 
Sbjct: 204 QDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIG 263

Query: 225 DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 284
           DA K+F  +  +D+VTW +MI+G A+HG+ ++A  LF +M++EG++PD + FV+LL ACN
Sbjct: 264 DATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACN 323

Query: 285 HAGLVDLGIQYFDSM------------------------------VNDYGIAAKPDHYTC 314
           H   ++ G +    M                              V D         +T 
Sbjct: 324 HPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTA 383

Query: 315 MVDLLGRAGKLVEAVDLIKKM---PFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLN 371
           M+    + G++ EA     KM     +P    F ++L AC     L   +    ++    
Sbjct: 384 MIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAG 443

Query: 372 PANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVV 408
             +       L ++YA      D  R+   + + NVV
Sbjct: 444 YGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVV 480



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/230 (28%), Positives = 115/230 (50%), Gaps = 33/230 (14%)

Query: 155 DGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLI 214
           + +++L  +    I+    + S++L  C    +L  G++++  + KS +  D      LI
Sbjct: 93  EAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGERIYNHIKKSGVQPDIFMRNTLI 152

Query: 215 SMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSI 274
           +MY KCG+   A ++F +++ KDV +WN ++ GY QHG  E+A +L ++M  + +KPD  
Sbjct: 153 NMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKR 212

Query: 275 TFVALLLACNHAGLVDLGIQYFD---------------SMVN------DYGIAAK----- 308
           TFV++L AC  A  VD G + ++               +++N      D G A K     
Sbjct: 213 TFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNL 272

Query: 309 PDH----YTCMVDLLGRAGKLVEAVDLIKKMP---FKPQPAIFGTLLSAC 351
           P      +T M+  L R G+  +A +L ++M     +P    F +LL AC
Sbjct: 273 PTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRAC 322



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 73/332 (21%), Positives = 132/332 (39%), Gaps = 61/332 (18%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQ----PDVVSYNIMLSCIL------- 49
           M  +  V+WN+++AGF  Q GK + A + F  + +    PD +++  +L+          
Sbjct: 575 MPKRDLVSWNTIIAGFV-QHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTE 633

Query: 50  ---LNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSA 106
              L++    AAFD        D      +IS + +  ++  A  +F  +P+KN  SW++
Sbjct: 634 GRRLHALITEAAFDC-------DVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTS 686

Query: 107 MISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGL 166
           MI+GY + G+  +A+ELF                                      M   
Sbjct: 687 MIAGYAQHGRGKEALELF------------------------------------YQMQQE 710

Query: 167 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 226
           G++P+  +    L  C+H   ++ G    Q + +  +         ++ ++ + G L +A
Sbjct: 711 GVKPDWITFVGALSACAHAGLIEEGLHHFQSMKEFNIEPRMEHYGCMVDLFGRAGLLNEA 770

Query: 227 CKLFLEIQ-RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNH 285
            +  +++Q   D   W A++     H   E A +   K K E    D+  FV L      
Sbjct: 771 VEFIIKMQVEPDSRVWGALLGACQVHLNVELAEKAAQK-KLELDPNDNGVFVILSNIYAA 829

Query: 286 AGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVD 317
           AG+     +    M+ D G+  KP      VD
Sbjct: 830 AGMWKEVAKMRKVML-DRGVVKKPGQSWIEVD 860


>gi|225446691|ref|XP_002277494.1| PREDICTED: pentatricopeptide repeat-containing protein At2g41080
           [Vitis vinifera]
          Length = 657

 Score =  449 bits (1154), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 232/564 (41%), Positives = 338/564 (59%), Gaps = 46/564 (8%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G+L  A  LF  +P+ +++S NI+++     S D V A   F  +P ++ A+WN M++G 
Sbjct: 101 GQLDTAITLFGVMPRKNIMSCNILING-YFRSGDWVTARKMFDEMPERNVATWNAMVAGL 159

Query: 81  VQKKNMAKARDLFLAMPE--------------KNSVSWSAMISG---------------- 110
           +Q +   +   LF  M E              +      A+++G                
Sbjct: 160 IQFEFNEEGLGLFSRMNELGFLPDEFALGSVLRGCAGLRALVAGRQVHGYVRKCGFEFNL 219

Query: 111 ---------YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLR 161
                    Y++CG L +   L +  P ++VVAW  +I+G  + GY      E+ L    
Sbjct: 220 VVVSSLAHMYMKCGSLGEGERLIRAMPSQNVVAWNTLIAGRAQNGY-----PEEVLDQYN 274

Query: 162 MMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCG 221
           MM   G RP+  +  SV+  CS L++L  G+Q+H  V K+      + ++ LISMY +CG
Sbjct: 275 MMKMAGFRPDKITFVSVISSCSELATLGQGQQIHAEVIKAGASLIVSVISSLISMYSRCG 334

Query: 222 DLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLL 281
            LE + K+FLE +  DVV W++MI+ Y  HG+G +A+ LF++M+ E ++ + +TF++LL 
Sbjct: 335 CLEYSLKVFLECENGDVVCWSSMIAAYGFHGRGVEAIDLFNQMEQEKLEANDVTFLSLLY 394

Query: 282 ACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQP 341
           AC+H GL + GI++FD MV  YG+  + +HYTCMVDLLGR G + EA  LI+ MP K   
Sbjct: 395 ACSHCGLKEKGIKFFDLMVEKYGVKPRLEHYTCMVDLLGRYGSVEEAEALIRSMPVKADV 454

Query: 342 AIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLS 401
             + TLLSAC++HK+ ++A   +  +F L+P +    YV L+NI+A+ K+WDDV+ +R +
Sbjct: 455 ITWKTLLSACKIHKKTEMARRISEEVFRLDPRDPVP-YVLLSNIHASDKRWDDVSDVRKA 513

Query: 402 MKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFA 461
           M++  + K PG SW+EV   +H+F  GD+ HP+ V I   L+EL   MK  GYVPD++  
Sbjct: 514 MRDRKLKKEPGISWLEVKNQIHQFCMGDKSHPKSVEIASYLRELTSEMKKRGYVPDIDSV 573

Query: 462 LHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKR 521
           LH +  E KE  L+ HSEKLAIAF L+  P+GTPIRV KNLRVC DCH A KYIS I  R
Sbjct: 574 LHDMDVEDKEYSLVHHSEKLAIAFALLYTPVGTPIRVIKNLRVCSDCHVAIKYISEISNR 633

Query: 522 EIIVRDTTRFHHFKDGTCSCGDYW 545
           EIIVRD++RFHHFK+G CSCGDYW
Sbjct: 634 EIIVRDSSRFHHFKNGRCSCGDYW 657



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 107/372 (28%), Positives = 177/372 (47%), Gaps = 49/372 (13%)

Query: 20  RGKLKDAQELFDK--IPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMI 77
           +G LK A + F      +P + S+ ++ SCI   S++ ++       L I    S +  I
Sbjct: 34  KGHLKQAFDRFSSHIWSEPSLFSH-LLQSCI---SENSLSLGKQLHSLIITSGCSSDKFI 89

Query: 78  SG-----FVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSV 132
           S      + +   +  A  LF  MP KN +S + +I+GY   G    A ++F   P ++V
Sbjct: 90  SNHLLNLYSKCGQLDTAITLFGVMPRKNIMSCNILINGYFRSGDWVTARKMFDEMPERNV 149

Query: 133 VAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGK 192
             W AM++G ++F +      E+GL L   M  LG  P+  +L SVL GC+ L +L  G+
Sbjct: 150 ATWNAMVAGLIQFEF-----NEEGLGLFSRMNELGFLPDEFALGSVLRGCAGLRALVAGR 204

Query: 193 QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHG 252
           QVH  V K     +   ++ L  MY KCG L +  +L   +  ++VV WN +I+G AQ+G
Sbjct: 205 QVHGYVRKCGFEFNLVVVSSLAHMYMKCGSLGEGERLIRAMPSQNVVAWNTLIAGRAQNG 264

Query: 253 KGEKALRLFDKMKDEGMKPDSITFVALLLACN-----------HAGLVDLG----IQYFD 297
             E+ L  ++ MK  G +PD ITFV+++ +C+           HA ++  G    +    
Sbjct: 265 YPEEVLDQYNMMKMAGFRPDKITFVSVISSCSELATLGQGQQIHAEVIKAGASLIVSVIS 324

Query: 298 SMVNDYGIAAKPDH---------------YTCMVDLLGRAGKLVEAVDLIKKMP---FKP 339
           S+++ Y      ++               ++ M+   G  G+ VEA+DL  +M     + 
Sbjct: 325 SLISMYSRCGCLEYSLKVFLECENGDVVCWSSMIAAYGFHGRGVEAIDLFNQMEQEKLEA 384

Query: 340 QPAIFGTLLSAC 351
               F +LL AC
Sbjct: 385 NDVTFLSLLYAC 396


>gi|449464596|ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449529868|ref|XP_004171920.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 734

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 245/575 (42%), Positives = 333/575 (57%), Gaps = 46/575 (8%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
           ++ L     Q G++ +AQ +FD+    D +S+  +++   L    +  A   F  +P+KD
Sbjct: 167 HTSLINMYAQSGEMNNAQLVFDQSNFRDAISFTALIAGYALWGY-MDRARQLFDEMPVKD 225

Query: 70  TASWNTMISGFVQKKNMAKARDLFLAM------PEKNSV--------------------S 103
             SWN MI+G+ Q     +A  LF  M      P ++++                    S
Sbjct: 226 VVSWNAMIAGYAQMGRSKEALLLFEDMRKANVPPNESTIVSVLSACAQSNALDLGNSMRS 285

Query: 104 W-------------SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVEN 150
           W             +A+I  Y +CG L  A ELF     + V++W  MI GY      + 
Sbjct: 286 WIEDRGLCSNLKLVNALIDMYSKCGDLQTARELFDDMLERDVISWNVMIGGYTHMCSYK- 344

Query: 151 SWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTAL 210
               + L L R M+  G+ P   +  S+L  C+HL ++ LGK +H  + K+     T+  
Sbjct: 345 ----EALALFREMLASGVEPTEITFLSILPSCAHLGAIDLGKWIHAYINKNFNSVSTSLS 400

Query: 211 TPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMK 270
           T LI +Y KCG++  A ++F  ++ K + +WNAMI G A HG+ +KA  LF KM  +G++
Sbjct: 401 TSLIDLYAKCGNIVAARQVFDGMKIKSLASWNAMICGLAMHGQADKAFELFSKMSSDGIE 460

Query: 271 PDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVD 330
           P+ ITFV +L AC HAGLVDLG Q+F SMV DY I+ K  HY CM+DLLGRAG   EA  
Sbjct: 461 PNEITFVGILSACKHAGLVDLGQQFFSSMVQDYKISPKSQHYGCMIDLLGRAGLFEEAES 520

Query: 331 LIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMK 390
           L++ M  KP  AI+G+LL ACR H R++L E  A  LF L P N  G YV L+NIYA   
Sbjct: 521 LLQNMEVKPDGAIWGSLLGACRDHGRVELGELVAERLFELEPDN-PGAYVLLSNIYAGAG 579

Query: 391 KWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMK 450
           KWDDVARIR  + +  + K+PG + IEV  VVHEF  GD+VHP+   I+  L+E+++++K
Sbjct: 580 KWDDVARIRTRLNDRGMKKVPGCTTIEVDNVVHEFLVGDKVHPQSEDIYRMLEEVDEQLK 639

Query: 451 LAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHR 510
           + G+V D    L+ + EE KE  L  HSEKLAIAFGLI    GTPIR+ KNLRVC +CH 
Sbjct: 640 VFGFVADTSEVLYDMDEEWKEGALSHHSEKLAIAFGLISTKPGTPIRIIKNLRVCRNCHS 699

Query: 511 ATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           ATK IS I  REII RD  RFHHFKDG+CSC DYW
Sbjct: 700 ATKLISKIFNREIIARDRNRFHHFKDGSCSCNDYW 734



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 122/419 (29%), Positives = 206/419 (49%), Gaps = 57/419 (13%)

Query: 67  IKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKV 126
           + D     ++I+ + Q   M  A+ +F     ++++S++A+I+GY   G +D+A +LF  
Sbjct: 161 VSDVFIHTSLINMYAQSGEMNNAQLVFDQSNFRDAISFTALIAGYALWGYMDRARQLFDE 220

Query: 127 APVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLS 186
            PVK VV+W AMI+GY + G      +++ L L   M    + PN S++ SVL  C+  +
Sbjct: 221 MPVKDVVSWNAMIAGYAQMGR-----SKEALLLFEDMRKANVPPNESTIVSVLSACAQSN 275

Query: 187 SLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMIS 246
           +L LG  +   +    LC +   +  LI MY KCGDL+ A +LF ++  +DV++WN MI 
Sbjct: 276 ALDLGNSMRSWIEDRGLCSNLKLVNALIDMYSKCGDLQTARELFDDMLERDVISWNVMIG 335

Query: 247 GYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIA 306
           GY      ++AL LF +M   G++P  ITF+++L +C H G +DLG ++  + +N    +
Sbjct: 336 GYTHMCSYKEALALFREMLASGVEPTEITFLSILPSCAHLGAIDLG-KWIHAYINKNFNS 394

Query: 307 AKPDHYTCMVDLLGRAGKLV-------------------------------EAVDLIKKM 335
                 T ++DL  + G +V                               +A +L  KM
Sbjct: 395 VSTSLSTSLIDLYAKCGNIVAARQVFDGMKIKSLASWNAMICGLAMHGQADKAFELFSKM 454

Query: 336 P---FKPQPAIFGTLLSACRVHKRLDLAE--FAAM-NLFNLNP-ANAAGCYVQLANIYAA 388
                +P    F  +LSAC+    +DL +  F++M   + ++P +   GC + L      
Sbjct: 455 SSDGIEPNEITFVGILSACKHAGLVDLGQQFFSSMVQDYKISPKSQHYGCMIDLLGRAGL 514

Query: 389 MKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVH-PELVSIHEKLKELE 446
            ++ +       S+ +N  VK  G  W   G+++   R   RV   ELV+  E+L ELE
Sbjct: 515 FEEAE-------SLLQNMEVKPDGAIW---GSLLGACRDHGRVELGELVA--ERLFELE 561



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/253 (29%), Positives = 114/253 (45%), Gaps = 39/253 (15%)

Query: 115 GQLDKAVELFKVAPVKSVVAWTAMISGY-MKFGYVENSWAEDGLKLLRMMIGLGIRPNAS 173
           G +  A+ LF      ++  W +MI G  M             L     MI  G+ PN+ 
Sbjct: 77  GDISYAISLFNSIEEPNLFIWNSMIRGLSMSLS------PALALVFFVRMIYSGVEPNSY 130

Query: 174 SLSSVLLGCSHLSSLQLGKQVH-------------------------------QLVFKSP 202
           +   +L  C+ L+S   GKQ+H                               QLVF   
Sbjct: 131 TFPFLLKSCAKLASAHEGKQIHAHVLKLGFVSDVFIHTSLINMYAQSGEMNNAQLVFDQS 190

Query: 203 LCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFD 262
             +D  + T LI+ Y   G ++ A +LF E+  KDVV+WNAMI+GYAQ G+ ++AL LF+
Sbjct: 191 NFRDAISFTALIAGYALWGYMDRARQLFDEMPVKDVVSWNAMIAGYAQMGRSKEALLLFE 250

Query: 263 KMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRA 322
            M+   + P+  T V++L AC  +  +DLG     S + D G+ +       ++D+  + 
Sbjct: 251 DMRKANVPPNESTIVSVLSACAQSNALDLG-NSMRSWIEDRGLCSNLKLVNALIDMYSKC 309

Query: 323 GKLVEAVDLIKKM 335
           G L  A +L   M
Sbjct: 310 GDLQTARELFDDM 322



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 59/234 (25%), Positives = 109/234 (46%), Gaps = 9/234 (3%)

Query: 183 SHLSSLQLGKQVHQLVFKSPLCKDTTALTPLI--SMYCKCGDLEDACKLFLEIQRKDVVT 240
           S   S++  KQ+H  + K+ L     AL+ LI  S   + GD+  A  LF  I+  ++  
Sbjct: 37  SKCQSIRTFKQIHAHIIKTGLHNTLFALSKLIEFSAVSRSGDISYAISLFNSIEEPNLFI 96

Query: 241 WNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV 300
           WN+MI G +       AL  F +M   G++P+S TF  LL +C        G Q   + V
Sbjct: 97  WNSMIRGLSMSLSPALALVFFVRMIYSGVEPNSYTFPFLLKSCAKLASAHEGKQ-IHAHV 155

Query: 301 NDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLA 360
              G  +    +T ++++  ++G++  A  +  +  F+   + F  L++   +   +D A
Sbjct: 156 LKLGFVSDVFIHTSLINMYAQSGEMNNAQLVFDQSNFRDAIS-FTALIAGYALWGYMDRA 214

Query: 361 E--FAAMNLFNLNPANA--AGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKM 410
              F  M + ++   NA  AG Y Q+     A+  ++D+ +  +   E+ +V +
Sbjct: 215 RQLFDEMPVKDVVSWNAMIAG-YAQMGRSKEALLLFEDMRKANVPPNESTIVSV 267


>gi|242050732|ref|XP_002463110.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
 gi|241926487|gb|EER99631.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
          Length = 802

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 229/556 (41%), Positives = 334/556 (60%), Gaps = 18/556 (3%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELF-----DKIPQPDVVSYNIMLSC----ILLN 51
           ++VK  V WN++++G+    G + +A ELF     +++P  +    +++ +C       +
Sbjct: 254 VDVKFDVVWNAMISGYV-HSGMVVEAFELFRRMVLERVPLDEFTFTSVLSACANAGFFAH 312

Query: 52  SDDVVAAFDFFQR--LPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMIS 109
              V       Q   +P       N +++ + +  N+A AR +F  M  K+ VSW+ ++S
Sbjct: 313 GKSVHGQITRLQPNFVPEAALPVNNALVTLYSKCGNIAVARRIFDNMKSKDVVSWNTILS 372

Query: 110 GYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIR 169
           GY+E   LDKAVE+F+  P K+ ++W  M+SGY+  G+     +ED LKL   M    ++
Sbjct: 373 GYVESSCLDKAVEVFEEMPYKNELSWMVMVSGYVHGGF-----SEDALKLFNRMRAEDVK 427

Query: 170 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 229
           P   + +  +  C  L SL+ GKQ+H  + +       +A   LI+MY +CG +++A  +
Sbjct: 428 PCDYTYAGAISACGELGSLKHGKQLHGHLVQLGFEGSNSAGNALITMYARCGAVKEANLM 487

Query: 230 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLV 289
           FL +   D V+WNAMIS   QHG G +AL LFD+M  EG+ PD I+F+ +L ACNH+GLV
Sbjct: 488 FLVMPNIDSVSWNAMISALGQHGHGREALELFDRMVAEGIYPDRISFLTVLTACNHSGLV 547

Query: 290 DLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLS 349
           D G QYF+SM  D+GI    DHYT ++DLLGRAG++ EA DLIK MPF+P P+I+  +LS
Sbjct: 548 DEGFQYFESMKRDFGIIPGEDHYTRLIDLLGRAGRIGEARDLIKTMPFEPTPSIWEAILS 607

Query: 350 ACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVK 409
            CR    ++L   AA  LF + P +  G Y+ L+N Y+A  +W D AR+R  M++  V K
Sbjct: 608 GCRTSGDMELGAHAADQLFKMTPQH-DGTYILLSNTYSAAGRWVDAARVRKLMRDRGVKK 666

Query: 410 MPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEV 469
            PG SWIE G  VH F  GD  HPE   +++ L+ +  RM+  GYVPD +  LH +    
Sbjct: 667 EPGCSWIEAGNKVHVFVVGDTKHPEAHKVYKFLEMVGARMRKLGYVPDTKVVLHDMEPHQ 726

Query: 470 KEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTT 529
           KE +L  HSE+LA+ FGL+K+P G  + V KNLR+C DCH    ++S    REI+VRD  
Sbjct: 727 KEHILFAHSERLAVGFGLLKLPPGATVTVLKNLRICDDCHAVMMFMSKAVGREIVVRDVR 786

Query: 530 RFHHFKDGTCSCGDYW 545
           RFHHFKDG CSCG+YW
Sbjct: 787 RFHHFKDGECSCGNYW 802



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 74/281 (26%), Positives = 136/281 (48%), Gaps = 14/281 (4%)

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAV 121
              +P KD  +W TM+ G+V++ ++  AR +F  +  K  V W+AMISGY+  G + +A 
Sbjct: 220 LDEMPDKDALTWTTMVVGYVRRGDVGAARSVFEEVDVKFDVVWNAMISGYVHSGMVVEAF 279

Query: 122 ELFKVAPVKSV----VAWTAMISGYMKFGYVENSWAEDG--LKLLRMMIGLGIRPNASSL 175
           ELF+   ++ V      +T+++S     G+  +  +  G   +L    +     P  ++L
Sbjct: 280 ELFRRMVLERVPLDEFTFTSVLSACANAGFFAHGKSVHGQITRLQPNFVPEAALPVNNAL 339

Query: 176 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR 235
            ++   C +++       V + +F +   KD  +   ++S Y +   L+ A ++F E+  
Sbjct: 340 VTLYSKCGNIA-------VARRIFDNMKSKDVVSWNTILSGYVESSCLDKAVEVFEEMPY 392

Query: 236 KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQY 295
           K+ ++W  M+SGY   G  E AL+LF++M+ E +KP   T+   + AC   G +  G Q 
Sbjct: 393 KNELSWMVMVSGYVHGGFSEDALKLFNRMRAEDVKPCDYTYAGAISACGELGSLKHGKQL 452

Query: 296 FDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 336
              +V   G          ++ +  R G + EA  +   MP
Sbjct: 453 HGHLVQ-LGFEGSNSAGNALITMYARCGAVKEANLMFLVMP 492



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 69/256 (26%), Positives = 109/256 (42%), Gaps = 46/256 (17%)

Query: 76  MISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPV--KSVV 133
           +I  +    ++  A  LF A P    V+ +++++ Y   G+L  AV  F   P   +  V
Sbjct: 65  LIHLYTLSGDLPAAATLFRADP--CPVAATSLVAAYAAAGRLPAAVSFFDAVPQARRDTV 122

Query: 134 AWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLG-IRPNASSLSSVLLGCSHLSSLQLGK 192
              A+IS Y +      S A   + + R ++  G +RP+  S +++L    HL ++ +  
Sbjct: 123 LHNAVISAYAR-----ASHAAPAVAVFRSLLASGSLRPDDYSFTALLSAAGHLPNISVRH 177

Query: 193 --QVHQLVFKSPLCKDTTALTPLISMYCKCGDLE---DACKLFLEIQRKDVVTW------ 241
             Q+   V KS      +    L+++Y KC  LE   DA K+  E+  KD +TW      
Sbjct: 178 CAQLQCSVLKSGAGGVLSVSNALVALYMKCEALEATRDARKVLDEMPDKDALTWTTMVVG 237

Query: 242 -------------------------NAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITF 276
                                    NAMISGY   G   +A  LF +M  E +  D  TF
Sbjct: 238 YVRRGDVGAARSVFEEVDVKFDVVWNAMISGYVHSGMVVEAFELFRRMVLERVPLDEFTF 297

Query: 277 VALLLACNHAGLVDLG 292
            ++L AC +AG    G
Sbjct: 298 TSVLSACANAGFFAHG 313


>gi|357516843|ref|XP_003628710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355522732|gb|AET03186.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 748

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 239/574 (41%), Positives = 338/574 (58%), Gaps = 46/574 (8%)

Query: 11  SVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDT 70
           S L     + G +  A+++FD++P+ +VV YN ++   L+    V  +   F  +  +D+
Sbjct: 182 SPLVDMYSKMGMISCARKVFDELPEKNVVMYNTLIMG-LMRCGRVEDSKRLFFEMRERDS 240

Query: 71  ASWNTMISGFVQKKNMAKARDLF-------------------------LAMPEKNSVSW- 104
            SW +MI+GF Q      A D+F                         +A+ E   V   
Sbjct: 241 ISWTSMITGFTQNGLDRDAIDIFREMKLENLQMDQYTFGSVLTACGGVMALQEGKQVHAY 300

Query: 105 -------------SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENS 151
                        SA++  Y +C  +  A  +FK    K+VV+WTAM+ GY + GY    
Sbjct: 301 IIRTDYKDNIFVASALVDMYCKCKNIKSAEAVFKKMTCKNVVSWTAMLVGYGQNGY---- 356

Query: 152 WAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALT 211
            +E+ +K    M   GI P+  +L SV+  C++L+SL+ G Q H     S L    T   
Sbjct: 357 -SEEAVKTFSDMQKYGIEPDDFTLGSVISSCANLASLEEGAQFHARALTSGLISFITVSN 415

Query: 212 PLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKP 271
            L+++Y KCG +ED+ +LF EI  KD VTW A++SGYAQ GK  + + LF+ M   G+KP
Sbjct: 416 ALVTLYGKCGSIEDSHRLFNEISFKDEVTWTALVSGYAQFGKANETIGLFESMLAHGLKP 475

Query: 272 DSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDL 331
           D +TF+ +L AC+ AGLV+ G Q F+SM+N++GI    DHYTCM+DL  RAG++ EA + 
Sbjct: 476 DKVTFIGVLSACSRAGLVEKGNQIFESMINEHGIVPIQDHYTCMIDLFSRAGRIEEARNF 535

Query: 332 IKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKK 391
           I KMPF P    + TLLS+CR +  +D+ ++AA  L  L+P N A  YV L+++YAA  K
Sbjct: 536 INKMPFSPDAISWATLLSSCRFYGNMDIGKWAAEFLMELDPHNTAS-YVLLSSVYAAKGK 594

Query: 392 WDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKL 451
           W++VAR+R  M++  + K PG SWI+    VH F + D+ +P    I+ +L++L  +M  
Sbjct: 595 WEEVARLRKDMRDKGLRKEPGCSWIKYKNQVHVFSADDKSNPFSDQIYSELEKLNYKMIK 654

Query: 452 AGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRA 511
            GYVPD+   LH VG+  K ++L  HSEKLAIAFGL+ +P G PIRV KNLRVC DCH A
Sbjct: 655 EGYVPDMNSVLHDVGDSEKIKMLNHHSEKLAIAFGLLFIPPGLPIRVVKNLRVCSDCHNA 714

Query: 512 TKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           TKYIS I  REI+VRDT RFH FKDGTCSCGD+W
Sbjct: 715 TKYISKITNREILVRDTARFHLFKDGTCSCGDFW 748



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 97/379 (25%), Positives = 186/379 (49%), Gaps = 59/379 (15%)

Query: 8   NWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLS----CILLNSDDVVAAFDFFQ 63
           +WN++L+ ++K  G++ + + LFD +P+ D VS+N ++S    C L+     V A++   
Sbjct: 77  SWNTILSAYSKL-GRVSEMEYLFDAMPRRDGVSWNSLISGYAGCGLIYQS--VKAYN--- 130

Query: 64  RLPIKDTASWN----------------------TMISGFVQKKN---------------- 85
            L +K+  S+N                        I G V K                  
Sbjct: 131 -LMLKNDGSFNLNRITFSTLLILASKRGCVKLGRQIHGHVVKFGFMSYVFVGSPLVDMYS 189

Query: 86  ----MAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISG 141
               ++ AR +F  +PEKN V ++ +I G + CG+++ +  LF     +  ++WT+MI+ 
Sbjct: 190 KMGMISCARKVFDELPEKNVVMYNTLIMGLMRCGRVEDSKRLFFEMRERDSISWTSMIT- 248

Query: 142 YMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKS 201
               G+ +N    D + + R M    ++ +  +  SVL  C  + +LQ GKQVH  + ++
Sbjct: 249 ----GFTQNGLDRDAIDIFREMKLENLQMDQYTFGSVLTACGGVMALQEGKQVHAYIIRT 304

Query: 202 PLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLF 261
               +    + L+ MYCKC +++ A  +F ++  K+VV+W AM+ GY Q+G  E+A++ F
Sbjct: 305 DYKDNIFVASALVDMYCKCKNIKSAEAVFKKMTCKNVVSWTAMLVGYGQNGYSEEAVKTF 364

Query: 262 DKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGR 321
             M+  G++PD  T  +++ +C +   ++ G Q+    +   G+ +       +V L G+
Sbjct: 365 SDMQKYGIEPDDFTLGSVISSCANLASLEEGAQFHARALTS-GLISFITVSNALVTLYGK 423

Query: 322 AGKLVEAVDLIKKMPFKPQ 340
            G + ++  L  ++ FK +
Sbjct: 424 CGSIEDSHRLFNEISFKDE 442



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 81/312 (25%), Positives = 144/312 (46%), Gaps = 45/312 (14%)

Query: 63  QRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVE 122
           + LP  +T   N +IS + +  ++  A  +F  MP  N  SW+ ++S Y + G++ +   
Sbjct: 37  KTLPYPETFLLNNLISSYAKLGSIPYACKVFDQMPHPNLYSWNTILSAYSKLGRVSEMEY 96

Query: 123 LFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI--GLGIRPNASSLSSVLL 180
           LF   P +  V+W ++ISGY   G +  S     +K   +M+        N  + S++L+
Sbjct: 97  LFDAMPRRDGVSWNSLISGYAGCGLIYQS-----VKAYNLMLKNDGSFNLNRITFSTLLI 151

Query: 181 GCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCK--------------------- 219
             S    ++LG+Q+H  V K          +PL+ MY K                     
Sbjct: 152 LASKRGCVKLGRQIHGHVVKFGFMSYVFVGSPLVDMYSKMGMISCARKVFDELPEKNVVM 211

Query: 220 ----------CGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGM 269
                     CG +ED+ +LF E++ +D ++W +MI+G+ Q+G    A+ +F +MK E +
Sbjct: 212 YNTLIMGLMRCGRVEDSKRLFFEMRERDSISWTSMITGFTQNGLDRDAIDIFREMKLENL 271

Query: 270 KPDSITFVALLLACNHAGLVDLGIQYFDSMV-NDYGIAAKPDHY--TCMVDLLGRAGKLV 326
           + D  TF ++L AC     +  G Q    ++  DY    K + +  + +VD+  +   + 
Sbjct: 272 QMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDY----KDNIFVASALVDMYCKCKNIK 327

Query: 327 EAVDLIKKMPFK 338
            A  + KKM  K
Sbjct: 328 SAEAVFKKMTCK 339



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 31/123 (25%), Positives = 62/123 (50%), Gaps = 4/123 (3%)

Query: 182 CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTW 241
           C    +    K +H  + K+    +T  L  LIS Y K G +  ACK+F ++   ++ +W
Sbjct: 19  CCETHNFTKAKNLHSHIIKTLPYPETFLLNNLISSYAKLGSIPYACKVFDQMPHPNLYSW 78

Query: 242 NAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN 301
           N ++S Y++ G+  +   LFD M     + D +++ +L+      GL+   ++ ++ M+ 
Sbjct: 79  NTILSAYSKLGRVSEMEYLFDAMP----RRDGVSWNSLISGYAGCGLIYQSVKAYNLMLK 134

Query: 302 DYG 304
           + G
Sbjct: 135 NDG 137


>gi|357440933|ref|XP_003590744.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479792|gb|AES60995.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 795

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 228/555 (41%), Positives = 339/555 (61%), Gaps = 24/555 (4%)

Query: 7   VNWNSVLAGFAKQRGKLKDAQELFDKIP----QPDVVSYNIMLSCILLNSDDVVAAFD-- 60
           V WN++++G+ + RG  ++A + F ++     Q D  +Y  ++S    + ++ +  F+  
Sbjct: 249 VAWNAMISGYVR-RGLYEEAFDTFRRMHSMGIQEDEYTYTSLISACG-SCNEKMGMFNCG 306

Query: 61  -----FFQRLPIKDTASW-----NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISG 110
                +  R  ++ +  +     N +I+ + +   M +AR +F  MP ++ +SW+A++SG
Sbjct: 307 RQVHGYILRTVVEPSHHFVLSVNNALITFYTKYDRMIEARRVFDKMPVRDIISWNAVLSG 366

Query: 111 YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRP 170
           Y+   ++++A  +F   P ++V+ WT MISG       +N + E+GLKL   M   G+ P
Sbjct: 367 YVNAQRIEEANSIFSEMPERNVLTWTVMISGL-----AQNGFGEEGLKLFNQMKSEGLEP 421

Query: 171 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 230
              + +  +  CS L SL  G+Q+H  V +       +A   LI+MY +CG +E A  +F
Sbjct: 422 CDYAFAGAITACSVLGSLDNGQQIHSQVIRLGHDSGLSAGNALITMYSRCGVVESAESVF 481

Query: 231 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVD 290
           L +   D V+WNAMI+  AQHG G KA+ LF++M  E + PD ITF+ +L ACNHAGL+ 
Sbjct: 482 LTMPYVDSVSWNAMIAALAQHGHGVKAIELFEQMMKEDILPDRITFLTILTACNHAGLIK 541

Query: 291 LGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSA 350
            G  YFD+M   YGI    DHY  ++DLL RAG  ++A  +IK MPF+    I+  LL+ 
Sbjct: 542 EGRHYFDTMCTRYGITPGEDHYARLIDLLCRAGMFLKAQSVIKSMPFEAGAPIWEALLAG 601

Query: 351 CRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKM 410
           CR+H  ++L   AA  L  L P    G Y+ L+N+YAA+ +WD+VAR+RL M+E  V K 
Sbjct: 602 CRIHGNMELGIQAADRLLELIPGQD-GTYIILSNMYAALGQWDEVARVRLLMRERGVKKE 660

Query: 411 PGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVK 470
           PG SW+EV  +VH F   D  HPE+ +++  L++L   MK  GYVPD +F LH +  E K
Sbjct: 661 PGCSWVEVENMVHVFLVDDARHPEVQAVYTYLQQLVNEMKKLGYVPDTKFVLHDMESEHK 720

Query: 471 EQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTR 530
           E  L  HSEKLA+ +G++K+PLG  IRVFKNLR+CGDCH A KYIS + +REI+VRD  R
Sbjct: 721 EHSLSTHSEKLAVVYGIMKLPLGATIRVFKNLRICGDCHNAFKYISKVVEREIVVRDRKR 780

Query: 531 FHHFKDGTCSCGDYW 545
           FHHFK+G CSCG+YW
Sbjct: 781 FHHFKNGECSCGNYW 795



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 106/424 (25%), Positives = 177/424 (41%), Gaps = 108/424 (25%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQP--DVVSYNIMLSCILLNSDDVVAAFDFFQR--- 64
            ++L+ ++   G +K AQ+LF+  P    D VSYN M++    + +D  AA + F +   
Sbjct: 75  TTLLSAYSSS-GNVKLAQQLFNATPLTIRDTVSYNAMITA-YSHGNDGHAALNLFVQMKR 132

Query: 65  ---LPIKDTAS----------------------------------WNTMISGFV------ 81
              LP   T S                                   N ++S +V      
Sbjct: 133 YGFLPDPFTFSSVLSALSLIADEERHCQMLHCEVIKLGTLLIPSVTNALLSCYVCCASSP 192

Query: 82  ---QKKNMAKARDLFLAMPEKNSV---SWSAMISGYIECGQLDKAVELFKVAPVKSVVAW 135
                + MA AR +F   P KN +   SW+ MI+GY+    L  A EL         VAW
Sbjct: 193 LVKSSQLMASARKVFDETP-KNQIYEPSWTTMIAGYVRNDDLVAARELLDGLTYPIDVAW 251

Query: 136 TAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSH----LSSLQLG 191
            AMISGY++ G       E+     R M  +GI+ +  + +S++  C      +     G
Sbjct: 252 NAMISGYVRRGLY-----EEAFDTFRRMHSMGIQEDEYTYTSLISACGSCNEKMGMFNCG 306

Query: 192 KQVHQLVFKSPL-----------------------------------CKDTTALTPLISM 216
           +QVH  + ++ +                                    +D  +   ++S 
Sbjct: 307 RQVHGYILRTVVEPSHHFVLSVNNALITFYTKYDRMIEARRVFDKMPVRDIISWNAVLSG 366

Query: 217 YCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITF 276
           Y     +E+A  +F E+  ++V+TW  MISG AQ+G GE+ L+LF++MK EG++P    F
Sbjct: 367 YVNAQRIEEANSIFSEMPERNVLTWTVMISGLAQNGFGEEGLKLFNQMKSEGLEPCDYAF 426

Query: 277 VALLLACNHAGLVDLGIQYFDSMV---NDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIK 333
              + AC+  G +D G Q    ++   +D G++A       ++ +  R G +  A  +  
Sbjct: 427 AGAITACSVLGSLDNGQQIHSQVIRLGHDSGLSAG----NALITMYSRCGVVESAESVFL 482

Query: 334 KMPF 337
            MP+
Sbjct: 483 TMPY 486



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 79/328 (24%), Positives = 133/328 (40%), Gaps = 69/328 (21%)

Query: 69  DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAP 128
           +T   N +I+ + +  N+  AR LF  +P+ + V+ + ++S Y   G +  A +LF   P
Sbjct: 39  NTFILNRLINIYCKSSNITYARKLFDKIPKPDIVARTTLLSAYSSSGNVKLAQQLFNATP 98

Query: 129 --VKSVVAWTAMISGYMKFGYVENSWAEDG---LKLLRMMIGLGIRPNASSLSSVLLGCS 183
             ++  V++ AMI+ Y        S   DG   L L   M   G  P+  + SSVL   S
Sbjct: 99  LTIRDTVSYNAMITAY--------SHGNDGHAALNLFVQMKRYGFLPDPFTFSSVLSALS 150

Query: 184 ------------HLSSLQLGK-----------QVHQLVFKSPLCKDTTAL---------- 210
                       H   ++LG              +     SPL K +  +          
Sbjct: 151 LIADEERHCQMLHCEVIKLGTLLIPSVTNALLSCYVCCASSPLVKSSQLMASARKVFDET 210

Query: 211 ----------TPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRL 260
                     T +I+ Y +  DL  A +L   +     V WNAMISGY + G  E+A   
Sbjct: 211 PKNQIYEPSWTTMIAGYVRNDDLVAARELLDGLTYPIDVAWNAMISGYVRRGLYEEAFDT 270

Query: 261 FDKMKDEGMKPDSITFVALLLACNHA----GLVDLGIQYFDSMVNDYGIAAKPDHY---- 312
           F +M   G++ D  T+ +L+ AC       G+ + G Q    ++       +P H+    
Sbjct: 271 FRRMHSMGIQEDEYTYTSLISACGSCNEKMGMFNCGRQVHGYILR---TVVEPSHHFVLS 327

Query: 313 --TCMVDLLGRAGKLVEAVDLIKKMPFK 338
               ++    +  +++EA  +  KMP +
Sbjct: 328 VNNALITFYTKYDRMIEARRVFDKMPVR 355



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 60/134 (44%), Gaps = 34/134 (25%)

Query: 183 SHLSSLQL-GKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR------ 235
           +H+S+ Q+  + VH  +  S    +T  L  LI++YCK  ++  A KLF +I +      
Sbjct: 15  NHVSTTQIIARAVHAHILTSGFKPNTFILNRLINIYCKSSNITYARKLFDKIPKPDIVAR 74

Query: 236 ---------------------------KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEG 268
                                      +D V++NAMI+ Y+    G  AL LF +MK  G
Sbjct: 75  TTLLSAYSSSGNVKLAQQLFNATPLTIRDTVSYNAMITAYSHGNDGHAALNLFVQMKRYG 134

Query: 269 MKPDSITFVALLLA 282
             PD  TF ++L A
Sbjct: 135 FLPDPFTFSSVLSA 148


>gi|328774757|gb|AEB39778.1| pentatricopeptide repeat protein 77 [Funaria hygrometrica]
          Length = 1161

 Score =  446 bits (1148), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 242/620 (39%), Positives = 342/620 (55%), Gaps = 84/620 (13%)

Query: 3    VKTTVNWNSVLAGFAKQRGKLKDAQELFDKIP----QPDVVSY-NIMLSC---------- 47
             +  ++WNS++AG A Q G  + A +LF ++     +PD +++ ++++ C          
Sbjct: 549  ARDIISWNSMIAGHA-QHGSYEAAYKLFLEMKKEGLEPDKITFASVLVGCKNPEALELGR 607

Query: 48   -----------------------ILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKK 84
                                   + +    +  A++ F  L  ++  SW  MI GF  + 
Sbjct: 608  QIHMLIIESGLQLDVNLGNALINMYIRCGSLQDAYEVFHSLRHRNVMSWTAMIGGFADQG 667

Query: 85   NMAKARDLFLAM------PEKNSVS---------------------------------WS 105
               KA +LF  M      P K++ S                                  +
Sbjct: 668  EDRKAFELFWQMQNDGFKPVKSTFSSILKACMSSACLDEGKKVIAHILNSGYELDTGVGN 727

Query: 106  AMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIG 165
            A+IS Y + G +  A ++F   P + +++W  MI+GY      +N      L+    M  
Sbjct: 728  ALISAYSKSGSMTDARKVFDKMPNRDIMSWNKMIAGY-----AQNGLGGTALQFAYQMQE 782

Query: 166  LGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLED 225
             G+  N  S  S+L  CS  S+L+ GK+VH  + K  +  D      LISMY KCG LE+
Sbjct: 783  QGVVLNKFSFVSILNACSSFSALEEGKRVHAEIVKRKMQGDVRVGAALISMYAKCGSLEE 842

Query: 226  ACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNH 285
            A ++F     K+VVTWNAMI+ YAQHG   KAL  F+ M  EG+KPD  TF ++L ACNH
Sbjct: 843  AQEVFDNFTEKNVVTWNAMINAYAQHGLASKALDFFNCMDKEGIKPDGSTFTSILSACNH 902

Query: 286  AGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFG 345
            +GLV  G + F S+ + +G++   +HY C+V LLGRAG+  EA  LI +MPF P  A++ 
Sbjct: 903  SGLVMEGNRIFSSLESQHGLSPTIEHYGCLVGLLGRAGRFQEAETLINQMPFPPDAAVWE 962

Query: 346  TLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKEN 405
            TLL ACR+H  + LAE AA N   LN  N A  YV L+N+YAA  +WDDVA+IR  M+  
Sbjct: 963  TLLGACRIHGNVALAEHAANNALKLNARNPA-VYVLLSNVYAAAGRWDDVAKIRRVMEGR 1021

Query: 406  NVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAV 465
             + K PG SWIEV  ++HEF + DR HPE   I+E+LK L   M+ AGY PD ++ LH +
Sbjct: 1022 GIRKEPGRSWIEVDNIIHEFIAADRSHPETAEIYEELKRLSLEMERAGYSPDTQYVLHNL 1081

Query: 466  GEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIV 525
             +E +E  L  HSE+LAIA+GL+K P GTPIR+FKNLR+CGDCH A+K+IS +  REII 
Sbjct: 1082 DKEHQETSLCTHSERLAIAYGLLKTPPGTPIRIFKNLRICGDCHTASKFISKLVGREIIA 1141

Query: 526  RDTTRFHHFKDGTCSCGDYW 545
            RD+ RFH FK+G CSC D+W
Sbjct: 1142 RDSNRFHTFKNGKCSCEDFW 1161



 Score =  155 bits (392), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 88/327 (26%), Positives = 165/327 (50%), Gaps = 55/327 (16%)

Query: 54  DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK-------------- 99
           D+  A + F  +P +D  SWN +I+G+ ++++  +A  L+  M  +              
Sbjct: 435 DLPRARELFNTMPKRDLISWNAIIAGYARREDRGEAMKLYKQMQSEGVKPGRVTFLHLLS 494

Query: 100 ---NSVSWS----------------------AMISGYIECGQLDKAVELFKVAPVKSVVA 134
              NS ++S                      A+++ Y  CG + +A  +F+    + +++
Sbjct: 495 ACTNSSAYSDGKMIHEDILRSGIKSNGHLANALMNMYRRCGSIMEAQNVFEGTRARDIIS 554

Query: 135 WTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQV 194
           W +MI+G+ + G  E ++     KL   M   G+ P+  + +SVL+GC +  +L+LG+Q+
Sbjct: 555 WNSMIAGHAQHGSYEAAY-----KLFLEMKKEGLEPDKITFASVLVGCKNPEALELGRQI 609

Query: 195 HQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKG 254
           H L+ +S L  D      LI+MY +CG L+DA ++F  ++ ++V++W AMI G+A  G+ 
Sbjct: 610 HMLIIESGLQLDVNLGNALINMYIRCGSLQDAYEVFHSLRHRNVMSWTAMIGGFADQGED 669

Query: 255 EKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN-----DYGIAAKP 309
            KA  LF +M+++G KP   TF ++L AC  +  +D G +    ++N     D G+    
Sbjct: 670 RKAFELFWQMQNDGFKPVKSTFSSILKACMSSACLDEGKKVIAHILNSGYELDTGVG--- 726

Query: 310 DHYTCMVDLLGRAGKLVEAVDLIKKMP 336
                ++    ++G + +A  +  KMP
Sbjct: 727 ---NALISAYSKSGSMTDARKVFDKMP 750



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 106/467 (22%), Positives = 211/467 (45%), Gaps = 49/467 (10%)

Query: 3   VKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFF 62
           + + +   + LA    + G +  A++  +     DVV YN +++ +  +     A   ++
Sbjct: 315 LNSDIRVGTALATMFVRCGDVAGAKQALEAFADRDVVVYNALIAALAQHGHYEEAFEQYY 374

Query: 63  QRLP---IKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVS----WSAMISGYIECG 115
           Q      + +  ++ ++++     K +     +   + E    S     +++IS Y  CG
Sbjct: 375 QMRSDGVVMNRTTYLSVLNACSTSKALGAGELIHSHISEVGHSSDVQIGNSLISMYARCG 434

Query: 116 QLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSL 175
            L +A ELF   P + +++W A+I+GY +          + +KL + M   G++P   + 
Sbjct: 435 DLPRARELFNTMPKRDLISWNAIIAGYAR-----REDRGEAMKLYKQMQSEGVKPGRVTF 489

Query: 176 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR 235
             +L  C++ S+   GK +H+ + +S +  +      L++MY +CG + +A  +F   + 
Sbjct: 490 LHLLSACTNSSAYSDGKMIHEDILRSGIKSNGHLANALMNMYRRCGSIMEAQNVFEGTRA 549

Query: 236 KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQY 295
           +D+++WN+MI+G+AQHG  E A +LF +MK EG++PD ITF ++L+ C +   ++LG Q 
Sbjct: 550 RDIISWNSMIAGHAQHGSYEAAYKLFLEMKKEGLEPDKITFASVLVGCKNPEALELGRQI 609

Query: 296 F---------------DSMVNDY-GIAAKPDHY--------------TCMVDLLGRAGKL 325
                           ++++N Y    +  D Y              T M+      G+ 
Sbjct: 610 HMLIIESGLQLDVNLGNALINMYIRCGSLQDAYEVFHSLRHRNVMSWTAMIGGFADQGED 669

Query: 326 VEAVDLIKKMP---FKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQL 382
            +A +L  +M    FKP  + F ++L AC     LD  +    ++ N       G    L
Sbjct: 670 RKAFELFWQMQNDGFKPVKSTFSSILKACMSSACLDEGKKVIAHILNSGYELDTGVGNAL 729

Query: 383 ANIYAAMKKWDDVARIRLSMKENNVVK----MPGYSWIEVGTVVHEF 425
            + Y+      D  ++   M   +++     + GY+   +G    +F
Sbjct: 730 ISAYSKSGSMTDARKVFDKMPNRDIMSWNKMIAGYAQNGLGGTALQF 776



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 118/463 (25%), Positives = 200/463 (43%), Gaps = 120/463 (25%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIP----QPDVVSY--------------- 41
           M  +  ++WN+++AG+A++  +  +A +L+ ++     +P  V++               
Sbjct: 446 MPKRDLISWNAIIAGYARREDR-GEAMKLYKQMQSEGVKPGRVTFLHLLSACTNSSAYSD 504

Query: 42  ---------------NIMLSCILLN----SDDVVAAFDFFQRLPIKDTASWNTMISGFVQ 82
                          N  L+  L+N       ++ A + F+    +D  SWN+MI+G  Q
Sbjct: 505 GKMIHEDILRSGIKSNGHLANALMNMYRRCGSIMEAQNVFEGTRARDIISWNSMIAGHAQ 564

Query: 83  KKNMAKARDLFLAM------PEKNSVS--------------------------------- 103
             +   A  LFL M      P+K + +                                 
Sbjct: 565 HGSYEAAYKLFLEMKKEGLEPDKITFASVLVGCKNPEALELGRQIHMLIIESGLQLDVNL 624

Query: 104 WSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAED--GLKLLR 161
            +A+I+ YI CG L  A E+F     ++V++WTAMI G+   G       ED    +L  
Sbjct: 625 GNALINMYIRCGSLQDAYEVFHSLRHRNVMSWTAMIGGFADQG-------EDRKAFELFW 677

Query: 162 MMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCG 221
            M   G +P  S+ SS+L  C   + L  GK+V   +  S    DT     LIS Y K G
Sbjct: 678 QMQNDGFKPVKSTFSSILKACMSSACLDEGKKVIAHILNSGYELDTGVGNALISAYSKSG 737

Query: 222 DLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLL 281
            + DA K+F ++  +D+++WN MI+GYAQ+G G  AL+   +M+++G+  +  +FV++L 
Sbjct: 738 SMTDARKVFDKMPNRDIMSWNKMIAGYAQNGLGGTALQFAYQMQEQGVVLNKFSFVSILN 797

Query: 282 ACN-----------HAGLVDLGIQ-------YFDSMVNDYGIAAKP----DHYT------ 313
           AC+           HA +V   +Q          SM    G   +     D++T      
Sbjct: 798 ACSSFSALEEGKRVHAEIVKRKMQGDVRVGAALISMYAKCGSLEEAQEVFDNFTEKNVVT 857

Query: 314 --CMVDLLGRAGKLVEAVDL---IKKMPFKPQPAIFGTLLSAC 351
              M++   + G   +A+D    + K   KP  + F ++LSAC
Sbjct: 858 WNAMINAYAQHGLASKALDFFNCMDKEGIKPDGSTFTSILSAC 900



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 104/446 (23%), Positives = 198/446 (44%), Gaps = 60/446 (13%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNS--DDVVAAFDFFQRLPI 67
           NS+L  + K    L  A+++F  I + DVVSYN ML      +  ++ +  F       I
Sbjct: 222 NSLLNMYGKCE-DLPSARQVFSGIYRRDVVSYNTMLGLYAQKAYVEECIGLFGQMSSEGI 280

Query: 68  K-DTASWNTMISGFVQKKNMAKARDLF-LAMPE---KNSVSWSAMISGYIECGQLDKAVE 122
             D  ++  ++  F     + + + +  LA+ E    +    +A+ + ++ CG +  A +
Sbjct: 281 PPDKVTYINLLDAFTTPSMLDEGKRIHKLAVNEGLNSDIRVGTALATMFVRCGDVAGAKQ 340

Query: 123 LFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGC 182
             +    + VV + A+I+   + G+ E ++ +        M   G+  N ++  SVL  C
Sbjct: 341 ALEAFADRDVVVYNALIAALAQHGHYEEAFEQ-----YYQMRSDGVVMNRTTYLSVLNAC 395

Query: 183 SHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWN 242
           S   +L  G+ +H  + +     D      LISMY +CGDL  A +LF  + ++D+++WN
Sbjct: 396 STSKALGAGELIHSHISEVGHSSDVQIGNSLISMYARCGDLPRARELFNTMPKRDLISWN 455

Query: 243 AMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVND 302
           A+I+GYA+     +A++L+ +M+ EG+KP  +TF+ LL AC ++     G    + ++  
Sbjct: 456 AIIAGYARREDRGEAMKLYKQMQSEGVKPGRVTFLHLLSACTNSSAYSDGKMIHEDILRS 515

Query: 303 YGIAAKPDHYTCMVDLLGRAGKLVEAVDL------------------------------- 331
            GI +       ++++  R G ++EA ++                               
Sbjct: 516 -GIKSNGHLANALMNMYRRCGSIMEAQNVFEGTRARDIISWNSMIAGHAQHGSYEAAYKL 574

Query: 332 ---IKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNL------FNLNPANAAGCYVQL 382
              +KK   +P    F ++L  C+  + L+L     M +       ++N  NA      L
Sbjct: 575 FLEMKKEGLEPDKITFASVLVGCKNPEALELGRQIHMLIIESGLQLDVNLGNA------L 628

Query: 383 ANIYAAMKKWDDVARIRLSMKENNVV 408
            N+Y       D   +  S++  NV+
Sbjct: 629 INMYIRCGSLQDAYEVFHSLRHRNVM 654



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 76/304 (25%), Positives = 153/304 (50%), Gaps = 12/304 (3%)

Query: 62  FQRLPIK-DTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISGYIECGQ 116
           +Q  P + + A++  ++    +K+++A+A+ +   M E     +    + +I+ Y++C  
Sbjct: 73  YQPRPTETNRAAYVDLVQNCTRKRSLAEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRS 132

Query: 117 LDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLS 176
           +  A ++F   P + V++W ++IS Y + G+ + ++     +L   M   G  P+  +  
Sbjct: 133 VSDAHQVFLKMPRRDVISWNSLISCYAQQGFKKKAF-----QLFEEMQTAGFIPSKITYI 187

Query: 177 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK 236
           S+L  C   + L+ GK++H  + ++   +D      L++MY KC DL  A ++F  I R+
Sbjct: 188 SILTACCSPAELEYGKKIHSKIIEAGYQRDPRVQNSLLNMYGKCEDLPSARQVFSGIYRR 247

Query: 237 DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYF 296
           DVV++N M+  YAQ    E+ + LF +M  EG+ PD +T++ LL A     ++D G +  
Sbjct: 248 DVVSYNTMLGLYAQKAYVEECIGLFGQMSSEGIPPDKVTYINLLDAFTTPSMLDEGKRIH 307

Query: 297 DSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKR 356
              VN+ G+ +     T +  +  R G +  A   ++    +    ++  L++A   H  
Sbjct: 308 KLAVNE-GLNSDIRVGTALATMFVRCGDVAGAKQALEAFADR-DVVVYNALIAALAQHGH 365

Query: 357 LDLA 360
            + A
Sbjct: 366 YEEA 369



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 77/322 (23%), Positives = 156/322 (48%), Gaps = 15/322 (4%)

Query: 23  LKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP----IKDTASWNTMIS 78
           + DA ++F K+P+ DV+S+N ++SC          AF  F+ +     I    ++ ++++
Sbjct: 133 VSDAHQVFLKMPRRDVISWNSLISCYAQQGFK-KKAFQLFEEMQTAGFIPSKITYISILT 191

Query: 79  GFVQKKNMAKARDLFLAMPE----KNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVA 134
                  +   + +   + E    ++    +++++ Y +C  L  A ++F     + VV+
Sbjct: 192 ACCSPAELEYGKKIHSKIIEAGYQRDPRVQNSLLNMYGKCEDLPSARQVFSGIYRRDVVS 251

Query: 135 WTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQV 194
           +  M+  Y +  YV     E+ + L   M   GI P+  +  ++L   +  S L  GK++
Sbjct: 252 YNTMLGLYAQKAYV-----EECIGLFGQMSSEGIPPDKVTYINLLDAFTTPSMLDEGKRI 306

Query: 195 HQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKG 254
           H+L     L  D    T L +M+ +CGD+  A +       +DVV +NA+I+  AQHG  
Sbjct: 307 HKLAVNEGLNSDIRVGTALATMFVRCGDVAGAKQALEAFADRDVVVYNALIAALAQHGHY 366

Query: 255 EKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTC 314
           E+A   + +M+ +G+  +  T++++L AC+ +  +  G +   S +++ G ++       
Sbjct: 367 EEAFEQYYQMRSDGVVMNRTTYLSVLNACSTSKALGAG-ELIHSHISEVGHSSDVQIGNS 425

Query: 315 MVDLLGRAGKLVEAVDLIKKMP 336
           ++ +  R G L  A +L   MP
Sbjct: 426 LISMYARCGDLPRARELFNTMP 447



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/242 (25%), Positives = 121/242 (50%), Gaps = 10/242 (4%)

Query: 169 RP---NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLED 225
           RP   N ++   ++  C+   SL   K++H  + ++ +  D      LI+MY KC  + D
Sbjct: 76  RPTETNRAAYVDLVQNCTRKRSLAEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVSD 135

Query: 226 ACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNH 285
           A ++FL++ R+DV++WN++IS YAQ G  +KA +LF++M+  G  P  IT++++L AC  
Sbjct: 136 AHQVFLKMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQTAGFIPSKITYISILTACCS 195

Query: 286 AGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFG 345
              ++ G +   S + + G    P     ++++ G+   L  A  +   + ++     + 
Sbjct: 196 PAELEYG-KKIHSKIIEAGYQRDPRVQNSLLNMYGKCEDLPSARQVFSGI-YRRDVVSYN 253

Query: 346 TLLS--ACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARI-RLSM 402
           T+L   A + +    +  F  M+   + P      Y+ L + +      D+  RI +L++
Sbjct: 254 TMLGLYAQKAYVEECIGLFGQMSSEGIPPDKVT--YINLLDAFTTPSMLDEGKRIHKLAV 311

Query: 403 KE 404
            E
Sbjct: 312 NE 313


>gi|224141479|ref|XP_002324099.1| predicted protein [Populus trichocarpa]
 gi|222867101|gb|EEF04232.1| predicted protein [Populus trichocarpa]
          Length = 676

 Score =  446 bits (1148), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 239/580 (41%), Positives = 335/580 (57%), Gaps = 56/580 (9%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCI----LLNSDDVVAAFDFFQRL 65
           N +L  +AK    L D+Q+LFD++P+ D+ S+NI++S      LL       A   F ++
Sbjct: 109 NRLLEMYAKC-DSLMDSQKLFDEMPERDLCSWNILISGYAKMGLLQE-----AKSLFDKM 162

Query: 66  PIKDTASWNTMISGFVQKKNMAKARDLFLAMP---------------------------- 97
           P +D  SW  MISG+V+     +A +LF  M                             
Sbjct: 163 PERDNFSWTAMISGYVRHDRPNEALELFRMMKRSDNSKSNKFTVSSALAAAAAVPCLRIG 222

Query: 98  ------------EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKF 145
                       + + V WSA+   Y +CG +++A  +F     + +V WTAMI  Y + 
Sbjct: 223 KEIHGYIMRTGLDSDEVVWSALSDMYGKCGSIEEARHIFDKMVDRDIVTWTAMIDRYFQD 282

Query: 146 GYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCK 205
           G       ++G  L   ++  GIRPN  + S VL  C++ +S +LGK+VH  + +     
Sbjct: 283 GR-----RKEGFDLFADLLRSGIRPNEFTFSGVLNACANQTSEELGKKVHGYMTRVGFDP 337

Query: 206 DTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMK 265
            + A + L+ MY KCG++  A ++F E  + D+ +W ++I+GYAQ+G+ ++A+R F+ + 
Sbjct: 338 FSFAASALVHMYSKCGNMVSAERVFKETPQPDLFSWTSLIAGYAQNGQPDEAIRYFELLV 397

Query: 266 DEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKL 325
             G +PD ITFV +L AC HAGLVD G+ YF S+   YG+    DHY C++DLL R+G+ 
Sbjct: 398 KSGTQPDHITFVGVLSACAHAGLVDKGLDYFHSIKEQYGLTHTADHYACIIDLLARSGQF 457

Query: 326 VEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANI 385
            EA ++I KM  KP   ++ +LL  CR+H  L LA+ AA  LF + P N A  YV LANI
Sbjct: 458 DEAENIISKMSMKPDKFLWASLLGGCRIHGNLKLAQRAAEALFEIEPENPA-TYVTLANI 516

Query: 386 YAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKEL 445
           YA    W +VA+IR +M +  VVK PG SWI +   VH F  GD  HP+   I+E L +L
Sbjct: 517 YATAGMWSEVAKIRKTMDDRGVVKKPGLSWIAIKRDVHVFLVGDDSHPKSKEINEFLGKL 576

Query: 446 EKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVC 505
            KRMK  G+VPD  F LH V +E KEQ L +HSEKLA+AFG+I  P GTPI+VFKNLR C
Sbjct: 577 SKRMKEEGFVPDTNFVLHDVEDEQKEQNLSYHSEKLAVAFGIISTPEGTPIKVFKNLRTC 636

Query: 506 GDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
            DCH A K+IS I  R+IIVRD+ RFH F+DG CSC DYW
Sbjct: 637 VDCHTAIKFISKITNRKIIVRDSNRFHFFEDGHCSCRDYW 676



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 96/336 (28%), Positives = 169/336 (50%), Gaps = 25/336 (7%)

Query: 19  QRGKLKDAQELFDKIPQPDVVSYNIML-SCILLNSDDVVAAFDFFQRLPIKDTAS----W 73
           Q+ +LK+A ++  +I +P    Y+ ++ SCI   S  +       Q + +          
Sbjct: 51  QQNRLKEALQILHQIDKPSASVYSTLIQSCI--KSRLLQQGKKVHQHIKLSGFVPGLFIL 108

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVV 133
           N ++  + +  ++  ++ LF  MPE++  SW+ +ISGY + G L +A  LF   P +   
Sbjct: 109 NRLLEMYAKCDSLMDSQKLFDEMPERDLCSWNILISGYAKMGLLQEAKSLFDKMPERDNF 168

Query: 134 AWTAMISGYMKFGYVENSWAEDGLKLLRMM-IGLGIRPNASSLSSVLLGCSHLSSLQLGK 192
           +WTAMIS     GYV +    + L+L RMM      + N  ++SS L   + +  L++GK
Sbjct: 169 SWTAMIS-----GYVRHDRPNEALELFRMMKRSDNSKSNKFTVSSALAAAAAVPCLRIGK 223

Query: 193 QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHG 252
           ++H  + ++ L  D    + L  MY KCG +E+A  +F ++  +D+VTW AMI  Y Q G
Sbjct: 224 EIHGYIMRTGLDSDEVVWSALSDMYGKCGSIEEARHIFDKMVDRDIVTWTAMIDRYFQDG 283

Query: 253 KGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV----NDYGIAAK 308
           + ++   LF  +   G++P+  TF  +L AC +    +LG +    M     + +  AA 
Sbjct: 284 RRKEGFDLFADLLRSGIRPNEFTFSGVLNACANQTSEELGKKVHGYMTRVGFDPFSFAA- 342

Query: 309 PDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIF 344
               + +V +  + G +V A  + K+    PQP +F
Sbjct: 343 ----SALVHMYSKCGNMVSAERVFKET---PQPDLF 371


>gi|222637368|gb|EEE67500.1| hypothetical protein OsJ_24934 [Oryza sativa Japonica Group]
          Length = 830

 Score =  446 bits (1147), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 228/549 (41%), Positives = 330/549 (60%), Gaps = 18/549 (3%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELF-----DKIPQPDVVSYNIMLSC----ILLNSDD 54
           K  V WN++++G+  Q G   DA ELF     +K+P  +    +++ +C      ++   
Sbjct: 261 KFDVVWNAMISGYV-QSGMCADAFELFRRMVSEKVPLDEFTFTSVLSACANAGFFVHGKS 319

Query: 55  VVAAFDFFQR--LPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYI 112
           V       Q   +P       N +++ + +   +  A+ +F  M  K+ VSW+ ++SGYI
Sbjct: 320 VHGQIIRLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGYI 379

Query: 113 ECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNA 172
           + G LDKAVE+FKV P K+ ++W  M+SGY     V    +ED LKL   M    ++P  
Sbjct: 380 DSGCLDKAVEVFKVMPYKNDLSWMVMVSGY-----VHGGLSEDALKLFNQMRAEDVKPCD 434

Query: 173 SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLE 232
            + +  +  C  L +L+ G+Q+H  + +       +A   L++MY KCG + DA  +FL 
Sbjct: 435 YTYAGAIAACGELGALKHGRQLHAHLVQCGFEASNSAGNALLTMYAKCGAVNDARLVFLV 494

Query: 233 IQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 292
           +   D V+WNAMIS   QHG G +AL LFD+M  EG+ PD I+F+ +L ACNHAGLVD G
Sbjct: 495 MPNLDSVSWNAMISALGQHGHGREALELFDQMVAEGIDPDRISFLTILTACNHAGLVDEG 554

Query: 293 IQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACR 352
             YF+SM  D+GI+   DHY  ++DLLGR+G++ EA DLIK MPF+P P+I+  +LS CR
Sbjct: 555 FHYFESMKRDFGISPGEDHYARLIDLLGRSGRIGEARDLIKTMPFEPTPSIWEAILSGCR 614

Query: 353 VHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPG 412
            +  ++   +AA  LF + P +  G Y+ L+N Y+A  +W D AR+R  M++  V K PG
Sbjct: 615 TNGDMEFGAYAADQLFRMIPQH-DGTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPG 673

Query: 413 YSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQ 472
            SWIEVG+ +H F  GD  HPE   +++ L+ +  RM+  GYVPD +F LH +    KE 
Sbjct: 674 CSWIEVGSKIHVFLVGDTKHPEAQEVYQFLEVIGARMRKLGYVPDTKFVLHDMEPHEKEY 733

Query: 473 LLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFH 532
           +L  HSEKLA+ FGL+K+P G  + V KNLR+CGDCH A  ++S    REI+VRD  RFH
Sbjct: 734 ILFAHSEKLAVGFGLLKLPPGATVTVLKNLRICGDCHTAMMFMSKAVGREIVVRDVRRFH 793

Query: 533 HFKDGTCSC 541
           HFKDG CSC
Sbjct: 794 HFKDGECSC 802



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 114/445 (25%), Positives = 175/445 (39%), Gaps = 119/445 (26%)

Query: 21  GKLKDAQELFDKIP--QPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPI----KDTASWN 74
           G+L+DA   FD +P  + D V +N M+S     S    A   F   L       D  S+ 
Sbjct: 106 GRLRDAAAFFDAVPPARRDTVLHNAMMSAFARASLAAPAVSVFHALLGSGSLRPDDYSFT 165

Query: 75  TMISGFVQKKNMA----------------------------------------KARDLFL 94
            +IS   Q  N+A                                         AR +  
Sbjct: 166 ALISAVGQMHNLAAPHCTQLHCSVLKSGAAAVLSVSNALIALYMKCDTPEASWDARKVLD 225

Query: 95  AMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAE 154
            MP+K+ ++W+ M+ GY+  G ++ A  +F+    K  V W AMIS     GYV++    
Sbjct: 226 EMPDKDDLTWTTMVVGYVRRGDVNAARSVFEEVDGKFDVVWNAMIS-----GYVQSGMCA 280

Query: 155 DGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVH-QLVFKSPLCKDTTAL--- 210
           D  +L R M+   +  +  + +SVL  C++      GK VH Q++   P      AL   
Sbjct: 281 DAFELFRRMVSEKVPLDEFTFTSVLSACANAGFFVHGKSVHGQIIRLQPNFVPEAALPVN 340

Query: 211 TPLISMYCKCGDLEDACKLFLEIQRKDVVTWNA--------------------------- 243
             L+++Y K G +  A ++F  +  KDVV+WN                            
Sbjct: 341 NALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGYIDSGCLDKAVEVFKVMPYKNDL 400

Query: 244 ----MISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN-----------HAGL 288
               M+SGY   G  E AL+LF++M+ E +KP   T+   + AC            HA L
Sbjct: 401 SWMVMVSGYVHGGLSEDALKLFNQMRAEDVKPCDYTYAGAIAACGELGALKHGRQLHAHL 460

Query: 289 VDLGIQYFDS-------------MVNDYGIA--AKPD----HYTCMVDLLGRAGKLVEAV 329
           V  G +  +S              VND  +     P+     +  M+  LG+ G   EA+
Sbjct: 461 VQCGFEASNSAGNALLTMYAKCGAVNDARLVFLVMPNLDSVSWNAMISALGQHGHGREAL 520

Query: 330 DLIKKM---PFKPQPAIFGTLLSAC 351
           +L  +M      P    F T+L+AC
Sbjct: 521 ELFDQMVAEGIDPDRISFLTILTAC 545



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 65/269 (24%), Positives = 121/269 (44%), Gaps = 25/269 (9%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLN--SDDVVAA 58
           MN+K  V+WN++L+G+    G L  A E+F  +P  + +S+ +M+S  +    S+D   A
Sbjct: 363 MNLKDVVSWNTILSGYIDS-GCLDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSED---A 418

Query: 59  FDFFQRLPIKDTASWNTMISGFV----QKKNMAKARDLFLAMP----EKNSVSWSAMISG 110
              F ++  +D    +   +G +    +   +   R L   +     E ++ + +A+++ 
Sbjct: 419 LKLFNQMRAEDVKPCDYTYAGAIAACGELGALKHGRQLHAHLVQCGFEASNSAGNALLTM 478

Query: 111 YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRP 170
           Y +CG ++ A  +F V P    V+W AMIS   + G+       + L+L   M+  GI P
Sbjct: 479 YAKCGAVNDARLVFLVMPNLDSVSWNAMISALGQHGH-----GREALELFDQMVAEGIDP 533

Query: 171 NASSLSSVLLGCSHLSSLQLGKQVHQLVFK----SPLCKDTTALTPLISMYCKCGDLEDA 226
           +  S  ++L  C+H   +  G    + + +    SP       L  L+    + G+  D 
Sbjct: 534 DRISFLTILTACNHAGLVDEGFHYFESMKRDFGISPGEDHYARLIDLLGRSGRIGEARDL 593

Query: 227 CKLFLEIQRKDVVTWNAMISGYAQHGKGE 255
            K         +  W A++SG   +G  E
Sbjct: 594 IKTMPFEPTPSI--WEAILSGCRTNGDME 620


>gi|225458036|ref|XP_002280360.1| PREDICTED: pentatricopeptide repeat-containing protein At1g25360
           [Vitis vinifera]
          Length = 799

 Score =  446 bits (1147), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 238/556 (42%), Positives = 337/556 (60%), Gaps = 18/556 (3%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIP----QPDVVSYNIMLSC-----ILLN 51
           M  K  V WN++++G+    G   +A E+F K+     Q D  +Y  +LS        L+
Sbjct: 251 MTEKLVVAWNAMISGYV-HHGFFLEALEMFRKMYLLGIQWDEFTYTSVLSACANAGFFLH 309

Query: 52  SDDVVAAFDFFQRLPIKD-TASWNTMISGFVQK-KNMAKARDLFLAMPEKNSVSWSAMIS 109
              V A     +  P  D + S N  ++    K   + +AR +F  MP K+ VSW+A++S
Sbjct: 310 GKQVHAYILRTEPRPSLDFSLSVNNALATLYWKCGKVDEARQVFNQMPVKDLVSWNAILS 369

Query: 110 GYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIR 169
           GY+  G++D+A   F+  P ++++ WT MISG       +N + E+ LKL   M   G  
Sbjct: 370 GYVNAGRIDEAKSFFEEMPERNLLTWTVMISGL-----AQNGFGEESLKLFNRMKSEGFE 424

Query: 170 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 229
           P   + +  ++ C+ L++L  G+Q+H  + +       +A   LI+MY KCG +E A  L
Sbjct: 425 PCDYAFAGAIIACAWLAALMHGRQLHAQLVRLGFDSSLSAGNALITMYAKCGVVEAAHCL 484

Query: 230 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLV 289
           FL +   D V+WNAMI+   QHG G +AL LF+ M  E + PD ITF+ +L  C+HAGLV
Sbjct: 485 FLTMPYLDSVSWNAMIAALGQHGHGAQALELFELMLKEDILPDRITFLTVLSTCSHAGLV 544

Query: 290 DLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLS 349
           + G +YF SM   YGI    DHY  M+DLL RAGK  EA D+I+ MP +P P I+  LL+
Sbjct: 545 EEGHRYFKSMSGLYGICPGEDHYARMIDLLCRAGKFSEAKDMIETMPVEPGPPIWEALLA 604

Query: 350 ACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVK 409
            CR+H  +DL   AA  LF L P +  G YV L+N+YA + +WDDVA++R  M++  V K
Sbjct: 605 GCRIHGNMDLGIQAAERLFELMPQHD-GTYVLLSNMYATVGRWDDVAKVRKLMRDKGVKK 663

Query: 410 MPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEV 469
            PG SWIEV   VH F   D VHPE+ +++  L+EL  +M+  GY+PD +F LH +  E 
Sbjct: 664 EPGCSWIEVENKVHVFLVDDIVHPEVQAVYNYLEELGLKMRKLGYIPDTKFVLHDMESEQ 723

Query: 470 KEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTT 529
           KE +L  HSEKLA+ FGL+K+PLG  +RVFKNLR+CGDCH A K++S + +REI+VRD  
Sbjct: 724 KEYVLSTHSEKLAVGFGLLKLPLGATVRVFKNLRICGDCHNAFKFMSKVVEREIVVRDGK 783

Query: 530 RFHHFKDGTCSCGDYW 545
           RFHHFK+G CSCG+YW
Sbjct: 784 RFHHFKNGECSCGNYW 799



 Score =  144 bits (364), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 121/444 (27%), Positives = 200/444 (45%), Gaps = 107/444 (24%)

Query: 1   MNVKTTVNWNSVLAGFAKQR---GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDD--- 54
           + ++ TV +N+++ G++      G ++  ++L     +PD  ++  +L  + L  +D   
Sbjct: 109 LGIRDTVCYNAMITGYSHNNDGFGAIELFRDLLRNGFRPDNFTFTSVLGALALIVEDEKQ 168

Query: 55  -------VVAAFDFFQRLPIKDTASWNTMISGFVQ---------KKNMAKARDLFLAMPE 98
                  VV +   F       T+  N ++S FV+            MA AR LF  M E
Sbjct: 169 CQQIHCAVVKSGSGFV------TSVLNALLSVFVKCASSPLVSSSSLMAAARKLFDEMTE 222

Query: 99  KNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLK 158
           ++ +SW+ MI+GY+  G+LD A +       K VVAW AMISGY+  G+       + L+
Sbjct: 223 RDELSWTTMIAGYVRNGELDAARQFLDGMTEKLVVAWNAMISGYVHHGFF-----LEALE 277

Query: 159 LLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKS----PLCKDTTALTPLI 214
           + R M  LGI+ +  + +SVL  C++      GKQVH  + ++     L    +    L 
Sbjct: 278 MFRKMYLLGIQWDEFTYTSVLSACANAGFFLHGKQVHAYILRTEPRPSLDFSLSVNNALA 337

Query: 215 SMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGY-------------------------- 248
           ++Y KCG +++A ++F ++  KD+V+WNA++SGY                          
Sbjct: 338 TLYWKCGKVDEARQVFNQMPVKDLVSWNAILSGYVNAGRIDEAKSFFEEMPERNLLTWTV 397

Query: 249 -----AQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN-----------HAGLVDLG 292
                AQ+G GE++L+LF++MK EG +P    F   ++AC            HA LV LG
Sbjct: 398 MISGLAQNGFGEESLKLFNRMKSEGFEPCDYAFAGAIIACAWLAALMHGRQLHAQLVRLG 457

Query: 293 IQYFDS-------MVNDYGIAAKPDHYTC---------------MVDLLGRAGKLVEAVD 330
              FDS       ++  Y      +   C               M+  LG+ G   +A++
Sbjct: 458 ---FDSSLSAGNALITMYAKCGVVEAAHCLFLTMPYLDSVSWNAMIAALGQHGHGAQALE 514

Query: 331 LIKKM---PFKPQPAIFGTLLSAC 351
           L + M      P    F T+LS C
Sbjct: 515 LFELMLKEDILPDRITFLTVLSTC 538



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 87/315 (27%), Positives = 143/315 (45%), Gaps = 38/315 (12%)

Query: 48  ILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPE--KNSVSWS 105
           +   S D+V+A   F  +   D  +  T+I+      N   AR++F A P   +++V ++
Sbjct: 59  VYCKSSDLVSAHHLFDEIRQPDIVARTTLIAAHSSAGNSNLAREIFFATPLGIRDTVCYN 118

Query: 106 AMISGYIECGQLDKAVELFK------VAP----VKSVVAWTAMISGYMKFGYVENSWAED 155
           AMI+GY        A+ELF+        P      SV+   A+I        VE+     
Sbjct: 119 AMITGYSHNNDGFGAIELFRDLLRNGFRPDNFTFTSVLGALALI--------VEDEKQCQ 170

Query: 156 GLKLLRMMIGLGIRPNA-SSLSSVLLGCSHLSSLQLGKQV--HQLVFKSPLCKDTTALTP 212
            +    +  G G   +  ++L SV + C+    +     +   + +F     +D  + T 
Sbjct: 171 QIHCAVVKSGSGFVTSVLNALLSVFVKCASSPLVSSSSLMAAARKLFDEMTERDELSWTT 230

Query: 213 LISMYCKCGDLEDACKLFLE-IQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKP 271
           +I+ Y + G+L DA + FL+ +  K VV WNAMISGY  HG   +AL +F KM   G++ 
Sbjct: 231 MIAGYVRNGEL-DAARQFLDGMTEKLVVAWNAMISGYVHHGFFLEALEMFRKMYLLGIQW 289

Query: 272 DSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY--------TCMVDLLGRAG 323
           D  T+ ++L AC +AG    G Q     V+ Y +  +P             +  L  + G
Sbjct: 290 DEFTYTSVLSACANAGFFLHGKQ-----VHAYILRTEPRPSLDFSLSVNNALATLYWKCG 344

Query: 324 KLVEAVDLIKKMPFK 338
           K+ EA  +  +MP K
Sbjct: 345 KVDEARQVFNQMPVK 359



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 53/129 (41%), Gaps = 33/129 (25%)

Query: 187 SLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVT------ 240
           S  + + VH  +  S        L  LI +YCK  DL  A  LF EI++ D+V       
Sbjct: 30  SYSIARTVHAHMIASGFKPRGYILNRLIDVYCKSSDLVSAHHLFDEIRQPDIVARTTLIA 89

Query: 241 ---------------------------WNAMISGYAQHGKGEKALRLFDKMKDEGMKPDS 273
                                      +NAMI+GY+ +  G  A+ LF  +   G +PD+
Sbjct: 90  AHSSAGNSNLAREIFFATPLGIRDTVCYNAMITGYSHNNDGFGAIELFRDLLRNGFRPDN 149

Query: 274 ITFVALLLA 282
            TF ++L A
Sbjct: 150 FTFTSVLGA 158


>gi|78183583|dbj|BAD67156.2| PpPPR_77 [Physcomitrella patens]
          Length = 1106

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 246/620 (39%), Positives = 333/620 (53%), Gaps = 84/620 (13%)

Query: 3    VKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVA----- 57
             +  ++WNS++AG A Q G  + A +LF ++   ++   NI  + +L    +  A     
Sbjct: 494  ARDVISWNSMIAGHA-QHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGK 552

Query: 58   ---------------------------------AFDFFQRLPIKDTASWNTMISGFVQKK 84
                                             A + F  L  +D  SW  MI G   + 
Sbjct: 553  QIHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQG 612

Query: 85   NMAKARDLFLAM------PEKNSVS---------------------------------WS 105
               KA +LF  M      P K++ S                                  +
Sbjct: 613  EDMKAIELFWQMQNEGFRPVKSTFSSILKVCTSSACLDEGKKVIAYILNSGYELDTGVGN 672

Query: 106  AMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIG 165
            A+IS Y + G +  A E+F   P + +V+W  +I+GY      +N   +  ++    M  
Sbjct: 673  ALISAYSKSGSMTDAREVFDKMPSRDIVSWNKIIAGY-----AQNGLGQTAVEFAYQMQE 727

Query: 166  LGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLED 225
              + PN  S  S+L  CS  S+L+ GK+VH  + K  L  D      LISMY KCG   +
Sbjct: 728  QDVVPNKFSFVSLLNACSSFSALEEGKRVHAEIVKRKLQGDVRVGAALISMYAKCGSQGE 787

Query: 226  ACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNH 285
            A ++F  I  K+VVTWNAMI+ YAQHG   KAL  F+ M+ EG+KPD  TF ++L ACNH
Sbjct: 788  AQEVFDNIIEKNVVTWNAMINAYAQHGLASKALGFFNCMEKEGIKPDGSTFTSILSACNH 847

Query: 286  AGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFG 345
            AGLV  G Q F SM ++YG+    +HY C+V LLGRA +  EA  LI +MPF P  A++ 
Sbjct: 848  AGLVLEGYQIFSSMESEYGVLPTIEHYGCLVGLLGRARRFQEAETLINQMPFPPDAAVWE 907

Query: 346  TLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKEN 405
            TLL ACR+H  + LAE AA N   LN  N A  Y+ L+N+YAA  +WDDVA+IR  M+  
Sbjct: 908  TLLGACRIHGNIALAEHAANNALKLNARNPA-VYILLSNVYAAAGRWDDVAKIRRVMEGR 966

Query: 406  NVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAV 465
             + K PG SWIEV  ++HEF + DR HPE   I+ +LK L   M+ AGY PD +  LH +
Sbjct: 967  GIRKEPGRSWIEVDNIIHEFIAADRSHPETAEIYAELKRLSVEMEEAGYFPDTQHVLHDL 1026

Query: 466  GEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIV 525
            G+  +E  L  HSE+LAIA+GLIK P GTPIR+FKNLR+CGDCH A+K+IS +  REII 
Sbjct: 1027 GKAHQETSLCTHSERLAIAYGLIKTPPGTPIRIFKNLRICGDCHTASKFISKLVGREIIA 1086

Query: 526  RDTTRFHHFKDGTCSCGDYW 545
            RD+ RFH FK+G CSC DYW
Sbjct: 1087 RDSNRFHSFKNGKCSCEDYW 1106



 Score =  151 bits (382), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 89/329 (27%), Positives = 163/329 (49%), Gaps = 55/329 (16%)

Query: 54  DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK-------------- 99
           D+  A + F  +P +D  SWN +I+G+ ++++  +A  L+  M  +              
Sbjct: 380 DLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLS 439

Query: 100 ---NSVSWS----------------------AMISGYIECGQLDKAVELFKVAPVKSVVA 134
              NS +++                      A+++ Y  CG L +A  +F+    + V++
Sbjct: 440 ACANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVIS 499

Query: 135 WTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQV 194
           W +MI+G+ + G  E ++     KL + M    + P+  + +SVL GC +  +L+LGKQ+
Sbjct: 500 WNSMIAGHAQHGSYETAY-----KLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQI 554

Query: 195 HQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKG 254
           H  + +S L  D      LI+MY +CG L+DA  +F  +Q +DV++W AMI G A  G+ 
Sbjct: 555 HGRITESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGED 614

Query: 255 EKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN-----DYGIAAKP 309
            KA+ LF +M++EG +P   TF ++L  C  +  +D G +    ++N     D G+    
Sbjct: 615 MKAIELFWQMQNEGFRPVKSTFSSILKVCTSSACLDEGKKVIAYILNSGYELDTGVG--- 671

Query: 310 DHYTCMVDLLGRAGKLVEAVDLIKKMPFK 338
                ++    ++G + +A ++  KMP +
Sbjct: 672 ---NALISAYSKSGSMTDAREVFDKMPSR 697



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 89/332 (26%), Positives = 166/332 (50%), Gaps = 16/332 (4%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK- 68
           NS+L+ + K  G L  A+++F  I   DVVSYN ML  +      V      F ++  + 
Sbjct: 167 NSLLSMYGKC-GDLPRARQVFAGISPRDVVSYNTMLG-LYAQKAYVKECLGLFGQMSSEG 224

Query: 69  ---DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVS----WSAMISGYIECGQLDKAV 121
              D  ++  ++  F     + + + +     E+   S     +A+++  + CG +D A 
Sbjct: 225 ISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAK 284

Query: 122 ELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLG 181
           + FK    + VV + A+I+   + G+   ++ +        M   G+  N ++  S+L  
Sbjct: 285 QAFKGTADRDVVVYNALIAALAQHGHNVEAFEQ-----YYRMRSDGVALNRTTYLSILNA 339

Query: 182 CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTW 241
           CS   +L+ GK +H  + +     D      LISMY +CGDL  A +LF  + ++D+++W
Sbjct: 340 CSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKRDLISW 399

Query: 242 NAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN 301
           NA+I+GYA+     +A+RL+ +M+ EG+KP  +TF+ LL AC ++     G    + ++ 
Sbjct: 400 NAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILR 459

Query: 302 DYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIK 333
             GI +       ++++  R G L+EA ++ +
Sbjct: 460 S-GIKSNGHLANALMNMYRRCGSLMEAQNVFE 490



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 78/320 (24%), Positives = 162/320 (50%), Gaps = 15/320 (4%)

Query: 25  DAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP----IKDTASWNTMISGF 80
           DA ++F ++P+ DV+S+N ++SC          AF  F+ +     I +  ++ ++++  
Sbjct: 80  DAHQVFKEMPRRDVISWNSLISCYAQQGFK-KKAFQLFEEMQNAGFIPNKITYISILTAC 138

Query: 81  VQKKNMAKAR----DLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWT 136
                +   +     +  A  +++    ++++S Y +CG L +A ++F     + VV++ 
Sbjct: 139 YSPAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYN 198

Query: 137 AMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQ 196
            M+  Y +  YV     ++ L L   M   GI P+  +  ++L   +  S L  GK++H+
Sbjct: 199 TMLGLYAQKAYV-----KECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHK 253

Query: 197 LVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEK 256
           L  +  L  D    T L++M  +CGD++ A + F     +DVV +NA+I+  AQHG   +
Sbjct: 254 LTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGTADRDVVVYNALIAALAQHGHNVE 313

Query: 257 ALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMV 316
           A   + +M+ +G+  +  T++++L AC+ +  ++ G +   S +++ G ++       ++
Sbjct: 314 AFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAG-KLIHSHISEDGHSSDVQIGNALI 372

Query: 317 DLLGRAGKLVEAVDLIKKMP 336
            +  R G L +A +L   MP
Sbjct: 373 SMYARCGDLPKARELFYTMP 392



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 78/294 (26%), Positives = 146/294 (49%), Gaps = 19/294 (6%)

Query: 69  DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSW--------SAMISGYIECGQLDKA 120
           + A++  ++    +K+ + +A+ +   M E    +W        + +I+ Y++C  +  A
Sbjct: 26  ERATYVALLQNCTRKRLLPEAKRIHAQMVE----AWVGPDIFLSNLLINMYVKCRSVLDA 81

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLL 180
            ++FK  P + V++W ++IS Y + G+ + ++     +L   M   G  PN  +  S+L 
Sbjct: 82  HQVFKEMPRRDVISWNSLISCYAQQGFKKKAF-----QLFEEMQNAGFIPNKITYISILT 136

Query: 181 GCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVT 240
            C   + L+ GK++H  + K+   +D      L+SMY KCGDL  A ++F  I  +DVV+
Sbjct: 137 ACYSPAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVS 196

Query: 241 WNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV 300
           +N M+  YAQ    ++ L LF +M  EG+ PD +T++ LL A     ++D G +     V
Sbjct: 197 YNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTV 256

Query: 301 NDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVH 354
            + G+ +     T +V +  R G +  A    K    +    ++  L++A   H
Sbjct: 257 EE-GLNSDIRVGTALVTMCVRCGDVDSAKQAFKGTADR-DVVVYNALIAALAQH 308


>gi|294463969|gb|ADE77505.1| unknown [Picea sitchensis]
          Length = 514

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 215/477 (45%), Positives = 309/477 (64%), Gaps = 6/477 (1%)

Query: 69  DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAP 128
           D      ++  + +  ++  A  +F  M E+++ +W+AMI+G+ +   + KA++LF    
Sbjct: 44  DVVVQTALVHMYARCGSLEDAGHVFDKMSERSTRTWNAMITGHAQNRDMKKALKLFYEMS 103

Query: 129 VKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSL 188
            + VV+WTA+I+GY + GY      ++ L +   M   G++ +   + SVL  C+ L++L
Sbjct: 104 ERDVVSWTAVIAGYAQNGY-----GDESLNVFNQMRKTGMKSDRFIMGSVLSACADLAAL 158

Query: 189 QLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGY 248
           +LG+Q H  V +S    D    + L+ MY K G +EDAC++F ++ +++ V+WN++I+G 
Sbjct: 159 ELGRQFHAYVVQSGFALDIVVGSALVDMYAKSGSMEDACQVFDKMPQRNEVSWNSIITGC 218

Query: 249 AQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK 308
           AQHG+G  A+ LF++M   G+KP+ I+FV +L AC+H GLV+ G  YF+ M  +YGI   
Sbjct: 219 AQHGRGNDAVLLFEQMLQAGIKPNEISFVGVLSACSHTGLVNEGRGYFNLMTQNYGIVPD 278

Query: 309 PDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLF 368
             HYTCM+DLLGRAG L EA + I  MP +P  +++G LL ACR+H   +LA+  A +L 
Sbjct: 279 VSHYTCMIDLLGRAGCLDEAENFINGMPVEPDVSVWGALLGACRIHGNTELAKRIAEHLL 338

Query: 369 NLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSG 428
            +     AG YV L+NIYAA  +WDD A++R  MK+  V+K PGYSWIEV T++H F +G
Sbjct: 339 GM-EVQIAGIYVLLSNIYAAAGQWDDAAKVRKLMKDRGVMKQPGYSWIEVKTIMHAFVAG 397

Query: 429 DRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLI 488
           +  HP+L  IHE L+ L ++MK AGYVP+  F L  V ++ KE  L  HSEKLAIAFG+I
Sbjct: 398 ETSHPQLKEIHEFLESLSRKMKAAGYVPNKNFVLQDVEDDEKELSLSHHSEKLAIAFGII 457

Query: 489 KVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
               GT IRV KNLRVCGDCH   K+IS    R+I+VRD  RFHHFKDG CSCGDYW
Sbjct: 458 NTNPGTTIRVAKNLRVCGDCHTVIKFISLNFTRKIVVRDANRFHHFKDGRCSCGDYW 514



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 67/225 (29%), Positives = 114/225 (50%), Gaps = 33/225 (14%)

Query: 163 MIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGD 222
           M+G G++PN  +LS+V+  C+ ++SL+ GKQ H  + K     D    T L+ MY +CG 
Sbjct: 1   MVGKGVKPNQFTLSTVVKACASIASLEQGKQAHNYIIKMGFESDVVVQTALVHMYARCGS 60

Query: 223 LEDACKLFLEIQRKDVVTWNAMIS-------------------------------GYAQH 251
           LEDA  +F ++  +   TWNAMI+                               GYAQ+
Sbjct: 61  LEDAGHVFDKMSERSTRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQN 120

Query: 252 GKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDH 311
           G G+++L +F++M+  GMK D     ++L AC     ++LG Q F + V   G A     
Sbjct: 121 GYGDESLNVFNQMRKTGMKSDRFIMGSVLSACADLAALELGRQ-FHAYVVQSGFALDIVV 179

Query: 312 YTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKR 356
            + +VD+  ++G + +A  +  KMP + + + + ++++ C  H R
Sbjct: 180 GSALVDMYAKSGSMEDACQVFDKMPQRNEVS-WNSIITGCAQHGR 223


>gi|356547226|ref|XP_003542017.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Glycine max]
          Length = 693

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 229/554 (41%), Positives = 332/554 (59%), Gaps = 17/554 (3%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  +   +WN+++ G+AK  G+L+ A++LFD++PQ D  S+N  +S  + + +    A +
Sbjct: 148 MGHRDLCSWNTMIVGYAKL-GRLEQARKLFDEMPQRDNFSWNAAISGYVTH-NQPREALE 205

Query: 61  FFQRLPIKDTASWNTMISGFVQKK-------NMAKARDLFLAMPEKN--SVSWSAMISGY 111
            F+ +   + +S N                  + K    +L   E N   V WSA++  Y
Sbjct: 206 LFRVMQRHERSSSNKFTLSSALAASAAIPCLRLGKEIHGYLIRTELNLDEVVWSALLDLY 265

Query: 112 IECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPN 171
            +CG LD+A  +F     + VV+WT MI         E+   E+G  L R ++  G+RPN
Sbjct: 266 GKCGSLDEARGIFDQMKDRDVVSWTTMIHRCF-----EDGRREEGFLLFRDLMQSGVRPN 320

Query: 172 ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFL 231
             + + VL  C+  ++  LGK+VH  +  +     + A++ L+ MY KCG+   A ++F 
Sbjct: 321 EYTFAGVLNACADHAAEHLGKEVHGYMMHAGYDPGSFAISALVHMYSKCGNTRVARRVFN 380

Query: 232 EIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDL 291
           E+ + D+V+W ++I GYAQ+G+ ++AL  F+ +   G KPD +T+V +L AC HAGLVD 
Sbjct: 381 EMHQPDLVSWTSLIVGYAQNGQPDEALHFFELLLQSGTKPDQVTYVGVLSACTHAGLVDK 440

Query: 292 GIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSAC 351
           G++YF S+   +G+    DHY C++DLL R+G+  EA ++I  MP KP   ++ +LL  C
Sbjct: 441 GLEYFHSIKEKHGLMHTADHYACVIDLLARSGRFKEAENIIDNMPVKPDKFLWASLLGGC 500

Query: 352 RVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMP 411
           R+H  L+LA+ AA  L+ + P N A  Y+ LANIYA    W +VA +R  M    +VK P
Sbjct: 501 RIHGNLELAKRAAKALYEIEPENPA-TYITLANIYANAGLWSEVANVRKDMDNMGIVKKP 559

Query: 412 GYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKE 471
           G SWIE+   VH F  GD  HP+   IHE L EL K++K  GYVPD  F LH V EE KE
Sbjct: 560 GKSWIEIKRQVHVFLVGDTSHPKTSDIHEFLGELSKKIKEEGYVPDTNFVLHDVEEEQKE 619

Query: 472 QLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRF 531
           Q L++HSEKLA+ FG+I  P GTPI+VFKNLR C DCH A KYIS I +R+I VRD+ RF
Sbjct: 620 QNLVYHSEKLAVVFGIISTPPGTPIKVFKNLRTCVDCHTAIKYISKIVQRKITVRDSNRF 679

Query: 532 HHFKDGTCSCGDYW 545
           H F+DG+CSC DYW
Sbjct: 680 HCFEDGSCSCKDYW 693



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 79/293 (26%), Positives = 147/293 (50%), Gaps = 20/293 (6%)

Query: 19  QRGKLKDAQELFDKIP-QPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTAS----- 72
           Q+ ++K+A EL  +   +P    Y+ +++  + +      A +  +R+     AS     
Sbjct: 67  QQKRVKEAVELLHRTDHRPSARVYSTLIAACVRHR-----ALELGRRVHAHTKASNFVPG 121

Query: 73  ---WNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPV 129
               N ++  + +  ++  A+ LF  M  ++  SW+ MI GY + G+L++A +LF   P 
Sbjct: 122 VFISNRLLDMYAKCGSLVDAQMLFDEMGHRDLCSWNTMIVGYAKLGRLEQARKLFDEMPQ 181

Query: 130 KSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI-GLGIRPNASSLSSVLLGCSHLSSL 188
           +   +W A IS     GYV ++   + L+L R+M        N  +LSS L   + +  L
Sbjct: 182 RDNFSWNAAIS-----GYVTHNQPREALELFRVMQRHERSSSNKFTLSSALAASAAIPCL 236

Query: 189 QLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGY 248
           +LGK++H  + ++ L  D    + L+ +Y KCG L++A  +F +++ +DVV+W  MI   
Sbjct: 237 RLGKEIHGYLIRTELNLDEVVWSALLDLYGKCGSLDEARGIFDQMKDRDVVSWTTMIHRC 296

Query: 249 AQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN 301
            + G+ E+   LF  +   G++P+  TF  +L AC       LG +    M++
Sbjct: 297 FEDGRREEGFLLFRDLMQSGVRPNEYTFAGVLNACADHAAEHLGKEVHGYMMH 349



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 52/199 (26%), Positives = 86/199 (43%), Gaps = 33/199 (16%)

Query: 169 RPNASSLSSVLLGCSHLSSLQLGKQVH-------------------------------QL 197
           RP+A   S+++  C    +L+LG++VH                               Q+
Sbjct: 84  RPSARVYSTLIAACVRHRALELGRRVHAHTKASNFVPGVFISNRLLDMYAKCGSLVDAQM 143

Query: 198 VFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKA 257
           +F     +D  +   +I  Y K G LE A KLF E+ ++D  +WNA ISGY  H +  +A
Sbjct: 144 LFDEMGHRDLCSWNTMIVGYAKLGRLEQARKLFDEMPQRDNFSWNAAISGYVTHNQPREA 203

Query: 258 LRLFDKM-KDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMV 316
           L LF  M + E    +  T  + L A      + LG +    ++    +      ++ ++
Sbjct: 204 LELFRVMQRHERSSSNKFTLSSALAASAAIPCLRLGKEIHGYLIRT-ELNLDEVVWSALL 262

Query: 317 DLLGRAGKLVEAVDLIKKM 335
           DL G+ G L EA  +  +M
Sbjct: 263 DLYGKCGSLDEARGIFDQM 281


>gi|449469198|ref|XP_004152308.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Cucumis sativus]
 gi|449484855|ref|XP_004156999.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Cucumis sativus]
          Length = 724

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 234/576 (40%), Positives = 330/576 (57%), Gaps = 48/576 (8%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
           N +L  +AK  G L DA+++FD++   D+ S+NIM+S   +   +   A + F ++P +D
Sbjct: 157 NRLLDMYAKC-GSLVDAEKVFDEMVHRDLCSWNIMISG-YVKGGNFEKARNLFDKMPNRD 214

Query: 70  TASWNTMISGFVQKKNMAKARDLFLAMP-------------------------------- 97
             SW  +ISG VQ     +A +L+  M                                 
Sbjct: 215 NFSWTAIISGCVQHNRPEEALELYRLMQKHDYSKSNKCTISSALAASAAIPSLHMGKKIH 274

Query: 98  --------EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVE 149
                   + + V W +++  Y +CG +++A  +F     + VV+WT MI  Y+K     
Sbjct: 275 GHIMRMGLDSDEVVWCSLLDMYGKCGSIEEARYIFDKMEERDVVSWTTMIHTYLK----- 329

Query: 150 NSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTA 209
           N   E+G  L R ++   I PN  + + VL  C+ L++  LGKQ+H  + +      ++A
Sbjct: 330 NGRREEGFALFRHLMNSNIMPNDFTFAGVLNACADLAAEDLGKQIHAYMVRVGFDSFSSA 389

Query: 210 LTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGM 269
            + L+ MY KCGD+E+A  +F  + + D+ +W +++ GYAQHG+ +KAL  F+ +   G 
Sbjct: 390 ASALVHMYSKCGDIENAKSVFEILPQPDLFSWTSLLVGYAQHGQHDKALHFFELLLKSGT 449

Query: 270 KPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAV 329
           KPD I F+ +L AC HAGLVD G++YF S+   +G+    DHY C++DLL RAG+  EA 
Sbjct: 450 KPDGIAFIGVLSACAHAGLVDKGLEYFHSIKEKHGLTRTIDHYACIIDLLARAGQFTEAE 509

Query: 330 DLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAM 389
            +I +MP KP   I+  LL  CR+H  L+LA+ AA +LF + P N A  YV LANIYA+ 
Sbjct: 510 SIINEMPIKPDKYIWAALLGGCRIHGNLELAKRAAKSLFEIEPENPA-TYVTLANIYASA 568

Query: 390 KKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRM 449
               + A IR +M    +VK PG SWIE+   VH F  GD  HP+   I E L EL KRM
Sbjct: 569 GMRAEEANIRETMDSRGIVKKPGMSWIEIRREVHVFSVGDNSHPKSKEILEYLSELSKRM 628

Query: 450 KLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCH 509
           K  GYVPD  F LH V  E KE+ L +HSEKLA+AFG+I  P GTPI+VFKNLR C DCH
Sbjct: 629 KEVGYVPDTNFVLHDVELEQKEENLSYHSEKLAVAFGIISTPSGTPIKVFKNLRTCVDCH 688

Query: 510 RATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
            A K+IS I  R+IIVRD+ RFH F+ G+CSC DYW
Sbjct: 689 NAIKFISNITGRKIIVRDSNRFHCFEGGSCSCKDYW 724



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/115 (38%), Positives = 64/115 (55%), Gaps = 5/115 (4%)

Query: 169 RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK 228
           +P AS   ++L  C    +L+ GKQVH  + K+           L+ MY KCG L DA K
Sbjct: 116 KPYASIYLTLLKFCLKQRALKEGKQVHAHI-KTSGSIGLYISNRLLDMYAKCGSLVDAEK 174

Query: 229 LFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC 283
           +F E+  +D+ +WN MISGY + G  EKA  LFDKM +     D+ ++ A++  C
Sbjct: 175 VFDEMVHRDLCSWNIMISGYVKGGNFEKARNLFDKMPNR----DNFSWTAIISGC 225


>gi|357477961|ref|XP_003609266.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355510321|gb|AES91463.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 738

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 245/568 (43%), Positives = 329/568 (57%), Gaps = 52/568 (9%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNS--DDVVAAFDFFQRLPIKDTASWNTMIS 78
           G++  A+ +FDK    D VS+  +++  +     DD    FD    +P+KD  SWN MIS
Sbjct: 180 GEMDFARLVFDKSSLRDAVSFTALITGYVSQGCLDDARRLFD---EIPVKDVVSWNAMIS 236

Query: 79  GFVQKKNMAKARDLFLAMPEKNSV--------------------------SW-------- 104
           G+VQ     +A   F  M E N +                          SW        
Sbjct: 237 GYVQSGRFEEAIVCFYEMQEANVLPNKSTMVVVLSACGHTRSGELGKWIGSWVRDNGFGS 296

Query: 105 -----SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKL 159
                +A+I  Y +CG+ D A ELF     K V++W  MI GY        S  E+ L L
Sbjct: 297 NLQLTNALIDMYCKCGETDIARELFDGIEEKDVISWNTMIGGYSYL-----SLYEEALAL 351

Query: 160 LRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTAL-TPLISMYC 218
             +M+   ++PN  +   +L  C+ L +L LGK VH  + K+       +L T LI MY 
Sbjct: 352 FEVMLRSNVKPNDVTFLGILHACACLGALDLGKWVHAYIDKNLRNSSNASLWTSLIDMYA 411

Query: 219 KCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGM-KPDSITFV 277
           KCG +E A ++F  +  +++ +WNAM+SG+A HG  E+AL LF +M ++G+ +PD ITFV
Sbjct: 412 KCGCIEAAERVFRSMHSRNLASWNAMLSGFAMHGHAERALALFSEMVNKGLFRPDDITFV 471

Query: 278 ALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPF 337
            +L AC  AGLVDLG QYF SM+ DYGI+ K  HY CM+DLL RA K  EA  L+K M  
Sbjct: 472 GVLSACTQAGLVDLGHQYFRSMIQDYGISPKLQHYGCMIDLLARAEKFEEAEILMKNMEM 531

Query: 338 KPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVAR 397
           +P  AI+G+LLSAC+ H R++  E+ A  LF L P NA G +V L+NIYA   +WDDVAR
Sbjct: 532 EPDGAIWGSLLSACKAHGRVEFGEYVAERLFQLEPENA-GAFVLLSNIYAGAGRWDDVAR 590

Query: 398 IRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPD 457
           IR  + +  + K+PG + IE+   VHEF  GD+ HPE  +I++ L E++K ++  G+VP+
Sbjct: 591 IRTRLNDKGMKKVPGCTSIEIDGDVHEFLVGDKFHPECNNIYKMLNEVDKLLEENGFVPN 650

Query: 458 LEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISA 517
               L+ + EE KE  L  HSEKLAI+FGLIK   GT IR+ KNLRVCG+CH ATK IS 
Sbjct: 651 TSEVLYDMDEEWKEGALSQHSEKLAISFGLIKTKPGTTIRIVKNLRVCGNCHSATKLISK 710

Query: 518 IEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           I  REII RD  RFHHFKDG CSC D W
Sbjct: 711 IFNREIIARDRNRFHHFKDGFCSCNDCW 738



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 95/293 (32%), Positives = 152/293 (51%), Gaps = 8/293 (2%)

Query: 75  TMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVA 134
           ++I  +     M  AR +F     +++VS++A+I+GY+  G LD A  LF   PVK VV+
Sbjct: 171 SVIHMYASVGEMDFARLVFDKSSLRDAVSFTALITGYVSQGCLDDARRLFDEIPVKDVVS 230

Query: 135 WTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQV 194
           W AMISGY++ G       E+ +     M    + PN S++  VL  C H  S +LGK +
Sbjct: 231 WNAMISGYVQSGRF-----EEAIVCFYEMQEANVLPNKSTMVVVLSACGHTRSGELGKWI 285

Query: 195 HQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKG 254
              V  +    +      LI MYCKCG+ + A +LF  I+ KDV++WN MI GY+     
Sbjct: 286 GSWVRDNGFGSNLQLTNALIDMYCKCGETDIARELFDGIEEKDVISWNTMIGGYSYLSLY 345

Query: 255 EKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTC 314
           E+AL LF+ M    +KP+ +TF+ +L AC   G +DLG      +  +   ++    +T 
Sbjct: 346 EEALALFEVMLRSNVKPNDVTFLGILHACACLGALDLGKWVHAYIDKNLRNSSNASLWTS 405

Query: 315 MVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLD--LAEFAAM 365
           ++D+  + G  +EA + + +       A +  +LS   +H   +  LA F+ M
Sbjct: 406 LIDMYAKCG-CIEAAERVFRSMHSRNLASWNAMLSGFAMHGHAERALALFSEM 457



 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 93/362 (25%), Positives = 148/362 (40%), Gaps = 75/362 (20%)

Query: 115 GQLDKAVELFKVAPVK---SVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPN 171
           G L  A+ LF+        +V  W ++I GY       +S     L L   M+  G++PN
Sbjct: 76  GDLSYALSLFEENQQHHKHNVFIWNSLIRGYSLSSSPLSS-----LHLFSRMLYYGVQPN 130

Query: 172 ASSLSSVLLGCSHLSSLQLGKQVH-------------------------------QLVFK 200
           + +   +   C+   +   GKQ+H                               +LVF 
Sbjct: 131 SHTFPFLFKSCTKAKATHEGKQLHAHALKLALHFNPHVHTSVIHMYASVGEMDFARLVFD 190

Query: 201 SPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRL 260
               +D  + T LI+ Y   G L+DA +LF EI  KDVV+WNAMISGY Q G+ E+A+  
Sbjct: 191 KSSLRDAVSFTALITGYVSQGCLDDARRLFDEIPVKDVVSWNAMISGYVQSGRFEEAIVC 250

Query: 261 FDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLG 320
           F +M++  + P+  T V +L AC H    +LG ++  S V D G  +       ++D+  
Sbjct: 251 FYEMQEANVLPNKSTMVVVLSACGHTRSGELG-KWIGSWVRDNGFGSNLQLTNALIDMYC 309

Query: 321 RAGKL---------VEAVDLIK-------------------------KMPFKPQPAIFGT 346
           + G+          +E  D+I                          +   KP    F  
Sbjct: 310 KCGETDIARELFDGIEEKDVISWNTMIGGYSYLSLYEEALALFEVMLRSNVKPNDVTFLG 369

Query: 347 LLSACRVHKRLDLAEFAAMNL-FNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKEN 405
           +L AC     LDL ++    +  NL  ++ A  +  L ++YA     +   R+  SM   
Sbjct: 370 ILHACACLGALDLGKWVHAYIDKNLRNSSNASLWTSLIDMYAKCGCIEAAERVFRSMHSR 429

Query: 406 NV 407
           N+
Sbjct: 430 NL 431


>gi|449435276|ref|XP_004135421.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
 gi|449493520|ref|XP_004159329.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 743

 Score =  443 bits (1139), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 242/574 (42%), Positives = 336/574 (58%), Gaps = 46/574 (8%)

Query: 11  SVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDT 70
           S L     + G + DA  +F++IP+ ++V YN M++  LL    +V A   F  +P KD+
Sbjct: 177 SPLVDMYAKTGFINDANRIFEEIPEKNIVVYNTMITG-LLRCRFIVEAEQLFDNMPEKDS 235

Query: 71  ASWNTMISGFVQKKNMAKARDLF-------------------------LAMPE------- 98
            SW T+I+G  Q     +A D F                         LA+ E       
Sbjct: 236 ISWTTIITGLTQNGLFKEAVDKFKEMGIEGFCMDQFTFGSVLTACGGFLALDEGKQIHAY 295

Query: 99  -------KNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENS 151
                   N    SA++  Y +C  +  A  +F+    K+V++WTAM+ GY + GY    
Sbjct: 296 IIRTDYQDNIFVGSALLDMYCKCRNVKYAEAVFRKMRHKNVISWTAMLVGYGQNGY---- 351

Query: 152 WAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALT 211
            +E+ +++   M    I P+  +L SV+  C++L+SL+ G Q H     S L    T   
Sbjct: 352 -SEEAVRIFCDMQRNEIHPDDFTLGSVISSCANLASLEEGAQFHGQALASGLICFVTVSN 410

Query: 212 PLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKP 271
            LI++Y KCG LE A +LF E++ +D V+W A++SGYAQ GK  + + LF+ M   G+ P
Sbjct: 411 ALITLYGKCGSLEHAHQLFHEMKIRDEVSWTALVSGYAQFGKANETISLFETMLAHGIVP 470

Query: 272 DSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDL 331
           D +TFV +L AC+ AGLV+ G  YF+ MV ++ I   PDHYTCM+DLL RAG+L EA + 
Sbjct: 471 DGVTFVGVLSACSRAGLVEKGYHYFECMVKEHRITPIPDHYTCMIDLLSRAGRLEEAKNF 530

Query: 332 IKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKK 391
           I +MPF P    + TLLS+CR++  L++ ++AA +L  L P N A  Y+ L++IYAA  K
Sbjct: 531 INQMPFSPDAIGWATLLSSCRLNGNLEIGKWAAESLHKLEPQNPAS-YILLSSIYAAKGK 589

Query: 392 WDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKL 451
           WDDVA++R  M+E  V K PG+SWI+    VH F + DR  P    I+ KL+ L  +M  
Sbjct: 590 WDDVAKLRKGMREMGVKKEPGHSWIKYKNKVHIFSADDRSSPFSDQIYAKLESLYLKMIE 649

Query: 452 AGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRA 511
            GYVPD+ F LH V +  K ++L  HSEKLAIAFGL+ +P G  IRV KNLRVCGDCH A
Sbjct: 650 EGYVPDMSFVLHDVEKSEKIKMLNHHSEKLAIAFGLLFIPDGLQIRVVKNLRVCGDCHNA 709

Query: 512 TKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           TKYIS I +REI+VRD  RFH FKDG CSCGD+W
Sbjct: 710 TKYISRITQREILVRDAVRFHLFKDGVCSCGDFW 743



 Score =  111 bits (278), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 66/232 (28%), Positives = 121/232 (52%), Gaps = 10/232 (4%)

Query: 69  DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAP 128
           +T  +N +I+ + +  ++  AR++F  +P+ N  SW+ ++S Y + G L     +F   P
Sbjct: 39  ETFLYNNLINTYGKLGDLKNARNVFDHIPQPNLFSWNTLLSAYSKLGYLQDMQRVFDSMP 98

Query: 129 VKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLG-IRPNASSLSSVLLGCSHLSS 187
              VV+W +++SGY   G +  S     +++  MM+  G +  N  + S++L+  S+   
Sbjct: 99  NHDVVSWNSLLSGYAGNGLISES-----VRVYNMMLKDGSVNLNRITFSTMLILSSNRGF 153

Query: 188 LQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISG 247
           + LG+Q+H  +FK          +PL+ MY K G + DA ++F EI  K++V +N MI+G
Sbjct: 154 VDLGRQIHGQIFKFGYQSYLFVGSPLVDMYAKTGFINDANRIFEEIPEKNIVVYNTMITG 213

Query: 248 YAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSM 299
             +     +A +LFD M ++    DSI++  ++      GL    +  F  M
Sbjct: 214 LLRCRFIVEAEQLFDNMPEK----DSISWTTIITGLTQNGLFKEAVDKFKEM 261


>gi|225449732|ref|XP_002267472.1| PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like
            [Vitis vinifera]
          Length = 1058

 Score =  443 bits (1139), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 233/579 (40%), Positives = 343/579 (59%), Gaps = 46/579 (7%)

Query: 5    TTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLN------------- 51
              V WN+++AG+  Q G LK+A++LF K+P  +  S+  M++  + N             
Sbjct: 488  NVVAWNAIIAGYT-QNGMLKEAKDLFQKMPVKNSASWAAMIAGFVQNEESREALELLIEL 546

Query: 52   --SDDVVAAFDF------------------FQRLPIKDTASWNT-----MISGFVQKKNM 86
              S  V +   F                     L IK    +N+     +IS + +  N+
Sbjct: 547  HRSGSVPSDSSFTSALSACANIGDVEIGRVIHSLAIKTGCQFNSYVMNGLISMYAKCGNV 606

Query: 87   AKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFG 146
                 +F  +  K++VSW+++ISG  E   LD A  +F+  P + VV+WTA+IS Y++ G
Sbjct: 607  EDGSHVFRTIRVKDTVSWNSLISGLSENYMLDDARVVFEKMPKRDVVSWTAIISAYVQAG 666

Query: 147  YVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKD 206
            +      E  L L   M+  GI+PN  +++S+L  C +L +++LG+Q H L+FK      
Sbjct: 667  H-----GEVALDLFLDMLARGIKPNQLTVTSLLSACGNLGAIKLGEQFHALIFKLGFDTF 721

Query: 207  TTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKD 266
                  LI+MY KCG  ED   +F E+   D++TWNA++ G AQ+G G++A+++F++M+ 
Sbjct: 722  LFVGNSLITMYFKCG-YEDGFCVFEEMPEHDLITWNAVLVGCAQNGLGKEAIKIFEQMEV 780

Query: 267  EGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLV 326
            EG+ PD ++F+ +L AC+HAGLVD G  +F+SM   YGI     HYTCMVDLLGRAG L 
Sbjct: 781  EGILPDQMSFLGVLCACSHAGLVDEGWAHFNSMTQKYGIMPLVYHYTCMVDLLGRAGYLS 840

Query: 327  EAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIY 386
            EA  LI+ MP KP   I+  LL ACR+H+ ++L +  A  LF +    +A  YV L+N++
Sbjct: 841  EAEALIENMPVKPDSVIWEALLGACRIHRNVELGQRVAERLFQMTKPKSA-TYVLLSNLF 899

Query: 387  AAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELE 446
            A+   WD VA IR  MK+  + K PG SWI+V   +H F +GDR H ++  I+  LKE  
Sbjct: 900  ASQGMWDKVAEIRKLMKDQGLTKEPGISWIQVKNKLHCFVTGDRTHDQIEEIYSALKEYY 959

Query: 447  KRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCG 506
               +  GY+PD  F LH V EE K+  LL+HSEKLA+ FG++  P G+PI++ KNLR+CG
Sbjct: 960  GCFRATGYMPDTNFVLHDVEEEQKQNELLYHSEKLAVVFGILSTPNGSPIQIIKNLRICG 1019

Query: 507  DCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
            DCH   K++S +  R+II+RD  RFHHF+DG+CSCGDYW
Sbjct: 1020 DCHTFMKFMSKVTLRKIIIRDGNRFHHFRDGSCSCGDYW 1058



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 96/317 (30%), Positives = 165/317 (52%), Gaps = 38/317 (11%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
           +++L  + +  G L  A   F+ +P+ +  S+  M++        +  A   ++R+P + 
Sbjct: 400 SAILNAYTRN-GSLDLAMHFFETMPERNEYSWTTMIAA-FAQCGRLDDAIQLYERVPEQT 457

Query: 70  TASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPV 129
            A+   M++ + Q   + KAR +F  +   N V+W+A+I+GY + G L +A +LF+  PV
Sbjct: 458 VATKTAMMTAYAQVGRIQKARLIFDEILNPNVVAWNAIIAGYTQNGMLKEAKDLFQKMPV 517

Query: 130 KSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQ 189
           K+  +W AMI+     G+V+N  + + L+LL  +   G  P+ SS +S L  C+++  ++
Sbjct: 518 KNSASWAAMIA-----GFVQNEESREALELLIELHRSGSVPSDSSFTSALSACANIGDVE 572

Query: 190 LGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISG-- 247
           +G+ +H L  K+    ++  +  LISMY KCG++ED   +F  I+ KD V+WN++ISG  
Sbjct: 573 IGRVIHSLAIKTGCQFNSYVMNGLISMYAKCGNVEDGSHVFRTIRVKDTVSWNSLISGLS 632

Query: 248 -----------------------------YAQHGKGEKALRLFDKMKDEGMKPDSITFVA 278
                                        Y Q G GE AL LF  M   G+KP+ +T  +
Sbjct: 633 ENYMLDDARVVFEKMPKRDVVSWTAIISAYVQAGHGEVALDLFLDMLARGIKPNQLTVTS 692

Query: 279 LLLACNHAGLVDLGIQY 295
           LL AC + G + LG Q+
Sbjct: 693 LLSACGNLGAIKLGEQF 709



 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 95/335 (28%), Positives = 176/335 (52%), Gaps = 16/335 (4%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQ 63
           +  V+WNS++ G++ Q GK+ +A+ LFD     ++ ++ I+L+        +  A + F+
Sbjct: 200 RDVVSWNSMINGYS-QNGKVDEARLLFDAFVGKNIRTWTILLTG-YAKEGRIEEAREVFE 257

Query: 64  RLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVEL 123
            +  ++  SWN MISG+VQ  ++  AR LF  MPEKN  SW+++++GY  C ++ +A EL
Sbjct: 258 SMTERNVVSWNAMISGYVQNGDLKNARKLFDEMPEKNVASWNSVVTGYCHCYRMSEAREL 317

Query: 124 FKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCS 183
           F   P ++ V+W  MISGY+       +W +  +K+ R +     RP+ S    VL   +
Sbjct: 318 FDQMPERNSVSWMVMISGYVHISDYWEAW-DVFVKMCRTV----ARPDQSIFVVVLSAIT 372

Query: 184 HLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNA 243
            L  L+L   +  +  K+    D    + +++ Y + G L+ A   F  +  ++  +W  
Sbjct: 373 GLDDLELIGSLRPIAIKTGYEGDVVVGSAILNAYTRNGSLDLAMHFFETMPERNEYSWTT 432

Query: 244 MISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDY 303
           MI+ +AQ G+ + A++L++++ ++ +     T  A++ A    G +      FD ++N  
Sbjct: 433 MIAAFAQCGRLDDAIQLYERVPEQTVA----TKTAMMTAYAQVGRIQKARLIFDEILNPN 488

Query: 304 GIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 338
            +A     +  ++    + G L EA DL +KMP K
Sbjct: 489 VVA-----WNAIIAGYTQNGMLKEAKDLFQKMPVK 518



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 80/319 (25%), Positives = 138/319 (43%), Gaps = 88/319 (27%)

Query: 55  VVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIEC 114
           V  A   F  +  +D  SWN+MI+G+ Q   + +AR LF A   KN  +W+ +++GY + 
Sbjct: 187 VEEARRVFNEMIQRDVVSWNSMINGYSQNGKVDEARLLFDAFVGKNIRTWTILLTGYAKE 246

Query: 115 GQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASS 174
           G++++A E+F+    ++VV+W AMISGY++ G ++N+         R +       N +S
Sbjct: 247 GRIEEAREVFESMTERNVVSWNAMISGYVQNGDLKNA---------RKLFDEMPEKNVAS 297

Query: 175 LSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ 234
            +SV+ G                                   YC C  + +A +LF ++ 
Sbjct: 298 WNSVVTG-----------------------------------YCHCYRMSEARELFDQMP 322

Query: 235 RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFV----------------- 277
            ++ V+W  MISGY       +A  +F KM     +PD   FV                 
Sbjct: 323 ERNSVSWMVMISGYVHISDYWEAWDVFVKMCRTVARPDQSIFVVVLSAITGLDDLELIGS 382

Query: 278 ------------------ALLLACNHAGLVDLGIQYFDSM--VNDYGIAAKPDHYTCMVD 317
                             A+L A    G +DL + +F++M   N+Y        +T M+ 
Sbjct: 383 LRPIAIKTGYEGDVVVGSAILNAYTRNGSLDLAMHFFETMPERNEYS-------WTTMIA 435

Query: 318 LLGRAGKLVEAVDLIKKMP 336
              + G+L +A+ L +++P
Sbjct: 436 AFAQCGRLDDAIQLYERVP 454


>gi|226505202|ref|NP_001141725.1| uncharacterized protein LOC100273856 [Zea mays]
 gi|194705708|gb|ACF86938.1| unknown [Zea mays]
 gi|413956425|gb|AFW89074.1| hypothetical protein ZEAMMB73_742653 [Zea mays]
          Length = 635

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 234/583 (40%), Positives = 332/583 (56%), Gaps = 48/583 (8%)

Query: 5   TTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQR 64
           +T+  N +L   +     L DA  L   +P  DV SYN +++ +  +   + +A   F R
Sbjct: 59  STLLSNRILHLLSSHPATLPDALALLSSLPSTDVCSYNTLVAALGRSPRGLASARALFDR 118

Query: 65  LPIKDTASWNTMISGFVQKKNMAKARDLFLAM---P------------------------ 97
           +P +D  SW+ ++S  V+      A  ++  M   P                        
Sbjct: 119 MPRRDHFSWSAIVSAHVRHGQPRAALAIYRRMLREPGGSGADNEFTASSALAAATAARCA 178

Query: 98  ---------------EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGY 142
                          + ++V WSA+   Y + G+LD A  +F   PV+ VV+WTAM+  Y
Sbjct: 179 RAGRELHCHVVRRGIDADAVVWSALADMYAKFGRLDDARSVFDRMPVRDVVSWTAMLDRY 238

Query: 143 MKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSP 202
              G        +G +L   M+  GI PN  + + VL  C+  +S +LGKQVH  + KS 
Sbjct: 239 FDAGR-----DGEGFRLFVRMMRSGILPNEFTYAGVLRACAEFTSEKLGKQVHGRMAKSR 293

Query: 203 LCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFD 262
                 A + L+ MY K GD+  A ++F  + + D+V+W AMISGYAQ+G+ ++AL  FD
Sbjct: 294 TGDSCFAGSALVHMYSKYGDMGTAMRVFRGMPKPDLVSWTAMISGYAQNGQPDEALHCFD 353

Query: 263 KMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRA 322
            +   G +PD +TFV +L AC HAGLVD G+  F S+ + YGI    DHY C++DLL R+
Sbjct: 354 MLLSSGFRPDHVTFVGVLSACAHAGLVDKGLGIFHSIKDKYGIEHTADHYACVIDLLSRS 413

Query: 323 GKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQL 382
           G    A D+I  MP KP   ++ +LL  CR+HK + LA +AA  LF + P N A  YV L
Sbjct: 414 GLFERAEDMINTMPVKPNKFLWASLLGGCRIHKNVRLAWWAAEALFEIEPENPA-TYVTL 472

Query: 383 ANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKL 442
           ANIYA++  +D+V  +R +M+   + KMP  SWIEVGT VH F  GD+ HP+   I+  L
Sbjct: 473 ANIYASVGLFDEVENMRRTMELRGITKMPASSWIEVGTRVHVFLVGDKSHPQAEEIYALL 532

Query: 443 KELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNL 502
           K+L  +M+  GYV D  F LH V +E K+Q + +HSE+LA+AFG+I  P G+PI+VFKNL
Sbjct: 533 KKLYVKMREEGYVADTGFVLHDVEDEQKQQDIGYHSERLAVAFGIIATPKGSPIKVFKNL 592

Query: 503 RVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           R+CGDCH   K IS I +REIIVRD+ RFHHFK+G+CSC DYW
Sbjct: 593 RICGDCHTTIKLISKIVQREIIVRDSNRFHHFKNGSCSCRDYW 635


>gi|297741272|emb|CBI32403.3| unnamed protein product [Vitis vinifera]
          Length = 658

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 227/497 (45%), Positives = 315/497 (63%), Gaps = 16/497 (3%)

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP-EKNSVSWSAMIS------- 109
           A   F  +P +D  SWN MISG +Q  N A+A D+   M  E   +++  ++S       
Sbjct: 169 ARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVFVD 228

Query: 110 GYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLG-I 168
            Y + G LD A ++F++ PVK V++W  +I+GY      +N  A + +++ +MM     I
Sbjct: 229 MYAKLGLLDSAHKVFEIIPVKDVISWNTLITGY-----AQNGLASEAIEVYKMMEECKEI 283

Query: 169 RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK 228
            PN  +  S+L   +H+ +LQ G ++H  V K+ L  D    T LI +Y KCG L DA  
Sbjct: 284 IPNQGTWVSILPAYAHVGALQQGMKIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMS 343

Query: 229 LFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGL 288
           LF ++ ++  VTWNA+IS +  HG  EK L+LF +M DEG+KPD +TFV+LL AC+H+G 
Sbjct: 344 LFYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGF 403

Query: 289 VDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLL 348
           V+ G   F  ++ +YGI     HY CMVDLLGRAG L  A D IK MP +P  +I+G LL
Sbjct: 404 VEEGKWCF-RLMQEYGIKPSLKHYGCMVDLLGRAGYLEMAYDFIKDMPLQPDASIWGALL 462

Query: 349 SACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVV 408
            ACR+H  ++L +FA+  LF ++  N  G YV L+NIYA + KW+ V ++R   +E  + 
Sbjct: 463 GACRIHGNIELGKFASDRLFEVDSKNV-GYYVLLSNIYANVGKWEGVDKVRSLARERGLK 521

Query: 409 KMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEE 468
           K PG+S IEV   V  F +G++ HP+   I+E+L+ L  +MK  GY+PD  F L  V E+
Sbjct: 522 KTPGWSTIEVNRKVDVFYTGNQSHPKCKEIYEELRVLTAKMKSLGYIPDYSFVLQDVEED 581

Query: 469 VKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDT 528
            KE +L  HSE+LAIAFG+I  P  +PIR+FKNLRVCGDCH ATK+IS I +REI+VRD+
Sbjct: 582 EKEHILTSHSERLAIAFGIISTPPKSPIRIFKNLRVCGDCHNATKFISRITQREIVVRDS 641

Query: 529 TRFHHFKDGTCSCGDYW 545
            RFHHFKDG CSCGDYW
Sbjct: 642 NRFHHFKDGICSCGDYW 658



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 87/347 (25%), Positives = 149/347 (42%), Gaps = 86/347 (24%)

Query: 51  NSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKA-------------RDLFLAMP 97
           N  DV  +   F ++P KD  +WN+MIS +V   +  +A             R  F   P
Sbjct: 63  NLGDVSLSRCTFDQIPQKDVYAWNSMISAYVHNGHFHEAIGCFYQLLLVSEIRPDFYTFP 122

Query: 98  E-------------------KNSVSW-----SAMISGYIECGQLDKAVELFKVAPVKSVV 133
                               K    W     +++I  Y   G    A  LF   P + + 
Sbjct: 123 PVLKACGTLVDGRKIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMG 182

Query: 134 AWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ 193
           +W AMIS     G ++N  A   L +L  M   GI+ N  ++ S+L              
Sbjct: 183 SWNAMIS-----GLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSIL-------------- 223

Query: 194 VHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGK 253
                   P+          + MY K G L+ A K+F  I  KDV++WN +I+GYAQ+G 
Sbjct: 224 --------PV---------FVDMYAKLGLLDSAHKVFEIIPVKDVISWNTLITGYAQNGL 266

Query: 254 GEKALRLFDKMKD-EGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN-----DYGIAA 307
             +A+ ++  M++ + + P+  T+V++L A  H G +  G++    ++      D  +A 
Sbjct: 267 ASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMKIHGRVIKTNLHLDVFVA- 325

Query: 308 KPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVH 354
                TC++D+ G+ G+LV+A+ L  ++P +     +  ++S   +H
Sbjct: 326 -----TCLIDVYGKCGRLVDAMSLFYQVP-QESSVTWNAIISCHGIH 366



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 88/176 (50%), Gaps = 7/176 (3%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI 164
           + +++ Y   G +  +   F   P K V AW +MIS Y+  G+   +         ++++
Sbjct: 55  TRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYVHNGHFHEAIG----CFYQLLL 110

Query: 165 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 224
              IRP+  +   VL  C  L     G+++H   FK     +      LI MY + G   
Sbjct: 111 VSEIRPDFYTFPPVLKACGTLVD---GRKIHCWAFKLGFQWNVFVAASLIHMYSRFGFTG 167

Query: 225 DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 280
            A  LF ++  +D+ +WNAMISG  Q+G   +AL + D+M+ EG+K + +T V++L
Sbjct: 168 IARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSIL 223



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 58/247 (23%), Positives = 96/247 (38%), Gaps = 45/247 (18%)

Query: 185 LSSLQLGKQVHQLVF--------KSPLCKDTTAL-------------TPLISMYCKCGDL 223
            SS  LG Q  ++ F        K+P  K   AL             T L+++Y   GD+
Sbjct: 8   FSSYGLGNQNEEIDFNFLFDSSTKTPFAKCLHALLVVAGKVQSIFISTRLVNLYANLGDV 67

Query: 224 EDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDK-MKDEGMKPDSITFVALLLA 282
             +   F +I +KDV  WN+MIS Y  +G   +A+  F + +    ++PD  TF  +L A
Sbjct: 68  SLSRCTFDQIPQKDVYAWNSMISAYVHNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKA 127

Query: 283 CN--------HAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKK 334
           C         H     LG Q+      +  +AA       ++ +  R G    A  L   
Sbjct: 128 CGTLVDGRKIHCWAFKLGFQW------NVFVAAS------LIHMYSRFGFTGIARSLFDD 175

Query: 335 MPFKPQ---PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKK 391
           MPF+      A+   L+      + LD+ +   +    +N            ++YA +  
Sbjct: 176 MPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVFVDMYAKLGL 235

Query: 392 WDDVARI 398
            D   ++
Sbjct: 236 LDSAHKV 242


>gi|359484088|ref|XP_002263394.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 762

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 225/524 (42%), Positives = 326/524 (62%), Gaps = 8/524 (1%)

Query: 23  LKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQ 82
           L  A++LF+     DVVS+N M+   + + + +  A   F R+  +D  SWNTMI+G+  
Sbjct: 246 LGAAKQLFNLCSARDVVSWNAMIDGYVKHVE-MGHARMVFDRMVCRDVISWNTMINGYAI 304

Query: 83  KKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGY 142
              + +A+ LF  MPE+N VSW++M++G+++CG ++ A  LF   P + VV+W +M++ Y
Sbjct: 305 VGKIDEAKRLFDEMPERNLVSWNSMLAGFVKCGNVEDAFGLFSEMPCRDVVSWNSMLACY 364

Query: 143 MKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSP 202
            + G        + L L   M  +G++P  +++ S+L  C+HL +L  G  +H  +  + 
Sbjct: 365 AQCGK-----PNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNR 419

Query: 203 LCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFD 262
           +  ++   T L+ MY KCG +  A ++F  ++ KDV+ WN +I+G A HG  ++A +LF 
Sbjct: 420 IEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGNVKEAQQLFK 479

Query: 263 KMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRA 322
           +MK+ G++P+ ITFVA+L AC+HAG+VD G +  D M + YGI  K +HY C++DLL RA
Sbjct: 480 EMKEAGVEPNDITFVAILSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARA 539

Query: 323 GKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQL 382
           G L EA++LI  MP +P P+  G LL  CR+H   +L E     L NL P + +G Y+ L
Sbjct: 540 GFLEEAMELIGTMPMEPNPSALGALLGGCRIHGNFELGEMVGKRLINLQPCH-SGRYILL 598

Query: 383 ANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKL 442
           +NIYAA KKWDD  ++R  MK N + K+PG S IE+  +VH F +GD  HPE   I+EKL
Sbjct: 599 SNIYAAAKKWDDARKVRNLMKVNGISKVPGVSVIELKGMVHRFVAGDWSHPESNKIYEKL 658

Query: 443 KELEKRMKLA-GYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKN 501
            E+  R+K A GY  D    L  + EE KE  L  HSEKLAIA+GL+ +     IR+ KN
Sbjct: 659 NEIHTRLKSAIGYSADTGNVLLDMEEEDKEHALAVHSEKLAIAYGLLHLDSKEAIRIVKN 718

Query: 502 LRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           LRVC DCH   K IS +  REIIVRD  RFHHF+DG CSC D+W
Sbjct: 719 LRVCRDCHHVIKLISKVYGREIIVRDRNRFHHFEDGECSCLDFW 762



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 87/294 (29%), Positives = 149/294 (50%), Gaps = 17/294 (5%)

Query: 98  EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGL 157
           E +S   S++I  Y     L  A +LF +   + VV+W AMI GY+K  +VE   A    
Sbjct: 227 ECDSYIVSSLIHLYANGKDLGAAKQLFNLCSARDVVSWNAMIDGYVK--HVEMGHA---- 280

Query: 158 KLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMY 217
              RM+    +  +  S ++++ G + +  +   K+    +F     ++  +   +++ +
Sbjct: 281 ---RMVFDRMVCRDVISWNTMINGYAIVGKIDEAKR----LFDEMPERNLVSWNSMLAGF 333

Query: 218 CKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFV 277
            KCG++EDA  LF E+  +DVV+WN+M++ YAQ GK  +AL LFD+M+  G+KP   T V
Sbjct: 334 VKCGNVEDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVV 393

Query: 278 ALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPF 337
           +LL AC H G +D G+ +  + +ND  I       T +VD+  + GK+  A  +   M  
Sbjct: 394 SLLSACAHLGALDKGL-HLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMES 452

Query: 338 KPQPAIFGTLLSACRVHKRLDLAE--FAAMNLFNLNPANAAGCYVQLANIYAAM 389
           K   A + T+++   +H  +  A+  F  M    + P +     +  A  +A M
Sbjct: 453 KDVLA-WNTIIAGMAIHGNVKEAQQLFKEMKEAGVEPNDITFVAILSACSHAGM 505



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 80/340 (23%), Positives = 141/340 (41%), Gaps = 79/340 (23%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  +  ++WN+++ G+A   GK+ +A+ LFD++P+ ++VS+N ML+   +   +V  AF 
Sbjct: 287 MVCRDVISWNTMINGYAIV-GKIDEAKRLFDEMPERNLVSWNSMLAG-FVKCGNVEDAFG 344

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP----------------------- 97
            F  +P +D  SWN+M++ + Q     +A  LF  M                        
Sbjct: 345 LFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGA 404

Query: 98  ----------------EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISG 141
                           E NS+  +A++  Y +CG++  A ++F     K V+AW  +I+G
Sbjct: 405 LDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAG 464

Query: 142 YMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKS 201
               G V     ++  +L + M   G+ PN  +  ++L  CSH   +  G+++   +  S
Sbjct: 465 MAIHGNV-----KEAQQLFKEMKEAGVEPNDITFVAILSACSHAGMVDEGQKLLDCMSSS 519

Query: 202 PLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLF 261
                   + P +  Y    DL                         A+ G  E+A+ L 
Sbjct: 520 ------YGIEPKVEHYGCVIDL------------------------LARAGFLEEAMELI 549

Query: 262 DKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN 301
             M    M+P+     ALL  C   G  +LG      ++N
Sbjct: 550 GTMP---MEPNPSALGALLGGCRIHGNFELGEMVGKRLIN 586



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 86/345 (24%), Positives = 143/345 (41%), Gaps = 68/345 (19%)

Query: 155 DGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLI 214
           + L L   M+  G++P+  +   V+  C+  S    G  VH  V KS    D+  ++ LI
Sbjct: 178 EALPLYHTMLQSGLKPDHMTYPFVIKACNESSVTWFGLLVHTHVVKSGFECDSYIVSSLI 237

Query: 215 SMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQH----------------------- 251
            +Y    DL  A +LF     +DVV+WNAMI GY +H                       
Sbjct: 238 HLYANGKDLGAAKQLFNLCSARDVVSWNAMIDGYVKHVEMGHARMVFDRMVCRDVISWNT 297

Query: 252 --------GKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDY 303
                   GK ++A RLFD+M +  +    +++ ++L      G V+     F  M    
Sbjct: 298 MINGYAIVGKIDEAKRLFDEMPERNL----VSWNSMLAGFVKCGNVEDAFGLFSEMPCRD 353

Query: 304 GIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM---PFKPQPAIFGTLLSAC----RVHKR 356
            ++     +  M+    + GK  EA+ L  +M     KP  A   +LLSAC     + K 
Sbjct: 354 VVS-----WNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKG 408

Query: 357 LDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWI 416
           L L  +   N   +N          L ++YA   K     ++  +M+  +V+     +W 
Sbjct: 409 LHLHTYINDNRIEVNSIVGTA----LVDMYAKCGKISLATQVFNAMESKDVL-----AW- 458

Query: 417 EVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVP-DLEF 460
              T++    +G  +H  +    ++ ++L K MK AG  P D+ F
Sbjct: 459 --NTII----AGMAIHGNV----KEAQQLFKEMKEAGVEPNDITF 493


>gi|328774759|gb|AEB39779.1| pentatricopeptide repeat protein 98 [Funaria hygrometrica]
          Length = 980

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 238/550 (43%), Positives = 343/550 (62%), Gaps = 29/550 (5%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNS--DDVVAAFDFFQRLPI 67
            ++L+ +AK  G L DA+ +F++I + +VV++N M++  + +   D+ VA F    +  I
Sbjct: 446 TALLSMYAKC-GSLMDARNVFERISKQNVVAWNAMITAYVQHEKYDNAVATFQALLKEGI 504

Query: 68  K-DTASWNTMISGFVQKKNMAKARD-----------LFLAMPEKNSVSWSAMISGYIECG 115
           K D++++ +++       N+ K+ D           +  A  E +    +A++S ++ CG
Sbjct: 505 KPDSSTFTSIL-------NVCKSPDALELGKWVQSLIIRAGFESDLHIRNALVSMFVNCG 557

Query: 116 QLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSL 175
            L  A+ LF   P + +V+W  +I+G+++ G  EN +A D  K   MM   G++P+  + 
Sbjct: 558 DLMSAMNLFNDMPERDLVSWNTIIAGFVQHG--ENQFAFDYFK---MMQESGVKPDQITF 612

Query: 176 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR 235
           + +L  C+   +L  G+++H L+ ++ L  D    T LISMY KCG ++DA  +F  + +
Sbjct: 613 TGLLNACASPEALTEGRRLHALITEAALDCDVVVGTGLISMYTKCGSIDDAHLVFHNLPK 672

Query: 236 KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQY 295
           K+V +W +MI+GYAQHG+G++AL LF +M+ EG+KPD ITFV  L AC HAGL+  G+ +
Sbjct: 673 KNVYSWTSMITGYAQHGRGKEALELFCQMQQEGVKPDWITFVGALSACAHAGLIKEGLHH 732

Query: 296 FDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHK 355
           F+SM  D+ I  + +HY CMVDL GRAG L EAV+ I KM  KP   ++G LL AC+VH 
Sbjct: 733 FESM-KDFNIEPRMEHYGCMVDLFGRAGLLHEAVEFINKMQVKPDSRLWGALLGACQVHL 791

Query: 356 RLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSW 415
            ++LAE  A     L+P N  G YV L+NIYAA   W +V ++R  M +  VVK PG SW
Sbjct: 792 DVELAEKVAQKKLELDP-NDDGVYVILSNIYAAAGMWKEVTKMRKVMLDRGVVKKPGQSW 850

Query: 416 IEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLL 475
           IEV   VH F S D+ HP++  IH +L  L   MK  GYVPD  + LH V +  KE  L 
Sbjct: 851 IEVDGRVHIFCSDDKTHPQIEEIHAELGRLHMEMKKLGYVPDTRYVLHDVEDSEKEHALC 910

Query: 476 FHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFK 535
            HSE+LAIA+GL+K P  TPI + KNLRVCGDCH ATK IS I KR+II RD+ RFHHFK
Sbjct: 911 HHSERLAIAYGLLKTPPLTPIVISKNLRVCGDCHTATKLISKITKRQIIARDSNRFHHFK 970

Query: 536 DGTCSCGDYW 545
           DG CSCGD+W
Sbjct: 971 DGVCSCGDFW 980



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 114/413 (27%), Positives = 192/413 (46%), Gaps = 84/413 (20%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQ----PDVVSYNIMLSC--------- 47
           M  K   +WN +L G+ + R + ++A  L +++ Q    PD  ++  ML+          
Sbjct: 165 MPDKDVYSWNLLLGGYVQHR-RYEEAFRLHEQMVQDGVKPDKYTFVYMLNACADAKNVDK 223

Query: 48  ------ILLNSD-------------------DVVAAFDFFQRLPIKDTASWNTMISGFVQ 82
                 ++LN+                     V  A   F  LP +D  +W +MI+G  +
Sbjct: 224 GGELFSLILNAGWDTDLFVGTALINMHIKCGGVDDALKVFNNLPRRDLITWTSMITGLAR 283

Query: 83  KKNMAKARDLFLAMPEK----NSVSW---------------------------------- 104
            +   +A +LF  M E+    + V++                                  
Sbjct: 284 HRQFKQACNLFQVMEEEGVQPDKVAFVSLLKACNHPEALEQGKRVHARMKEVGLDTEIYV 343

Query: 105 -SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMM 163
            +A++S Y +CG ++ A+E+F +   ++VV+WTAMI+G+ + G +E ++          M
Sbjct: 344 GTALLSMYTKCGSMEDALEVFNLVKGRNVVSWTAMIAGFAQHGRMEEAFL-----FFNKM 398

Query: 164 IGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDL 223
           I  GI PN  +  S+L  CS  S+L+ G+Q+H  + K+    D    T L+SMY KCG L
Sbjct: 399 IESGIEPNRVTFMSILGACSRPSALKQGRQIHDRIIKAGYITDDRVRTALLSMYAKCGSL 458

Query: 224 EDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC 283
            DA  +F  I +++VV WNAMI+ Y QH K + A+  F  +  EG+KPDS TF ++L  C
Sbjct: 459 MDARNVFERISKQNVVAWNAMITAYVQHEKYDNAVATFQALLKEGIKPDSSTFTSILNVC 518

Query: 284 NHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 336
                ++LG ++  S++   G  +       +V +    G L+ A++L   MP
Sbjct: 519 KSPDALELG-KWVQSLIIRAGFESDLHIRNALVSMFVNCGDLMSAMNLFNDMP 570



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 107/441 (24%), Positives = 208/441 (47%), Gaps = 81/441 (18%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVV----SYNIMLS-CI----LLN 51
           +++K T   N+ L   +K  G+L +A  +   +  P +     +Y+ +L  CI    L +
Sbjct: 64  VDIKNTQRANAFLNRLSKA-GQLSEAMLVLLSVDSPHIQIHRQTYSSLLQLCIKHKNLGD 122

Query: 52  SDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGY 111
            + +     F +  P  D   WN +IS + +  N   A+ +F  MP+K+  SW+ ++ GY
Sbjct: 123 GERIHNHIKFSKIQP--DIFMWNMLISMYAKCGNTNSAKQIFDEMPDKDVYSWNLLLGGY 180

Query: 112 IECGQLDKAVELFK------VAPVKSVVAW------------------------------ 135
           ++  + ++A  L +      V P K    +                              
Sbjct: 181 VQHRRYEEAFRLHEQMVQDGVKPDKYTFVYMLNACADAKNVDKGGELFSLILNAGWDTDL 240

Query: 136 ---TAMISGYMKFGYVEN--------------SWA------------EDGLKLLRMMIGL 166
              TA+I+ ++K G V++              +W             +    L ++M   
Sbjct: 241 FVGTALINMHIKCGGVDDALKVFNNLPRRDLITWTSMITGLARHRQFKQACNLFQVMEEE 300

Query: 167 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 226
           G++P+  +  S+L  C+H  +L+ GK+VH  + +  L  +    T L+SMY KCG +EDA
Sbjct: 301 GVQPDKVAFVSLLKACNHPEALEQGKRVHARMKEVGLDTEIYVGTALLSMYTKCGSMEDA 360

Query: 227 CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHA 286
            ++F  ++ ++VV+W AMI+G+AQHG+ E+A   F+KM + G++P+ +TF+++L AC+  
Sbjct: 361 LEVFNLVKGRNVVSWTAMIAGFAQHGRMEEAFLFFNKMIESGIEPNRVTFMSILGACSRP 420

Query: 287 GLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGT 346
             +  G Q  D ++   G        T ++ +  + G L++A ++ +++  K     +  
Sbjct: 421 SALKQGRQIHDRIIK-AGYITDDRVRTALLSMYAKCGSLMDARNVFERIS-KQNVVAWNA 478

Query: 347 LLSACRVHKRLD--LAEFAAM 365
           +++A   H++ D  +A F A+
Sbjct: 479 MITAYVQHEKYDNAVATFQAL 499



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 66/132 (50%), Gaps = 10/132 (7%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  +  V+WN+++AGF  Q G+ + A + F  + +  V    I  +  LLN+     A  
Sbjct: 569 MPERDLVSWNTIIAGFV-QHGENQFAFDYFKMMQESGVKPDQITFTG-LLNACASPEALT 626

Query: 61  FFQRLPIK--------DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYI 112
             +RL           D      +IS + +  ++  A  +F  +P+KN  SW++MI+GY 
Sbjct: 627 EGRRLHALITEAALDCDVVVGTGLISMYTKCGSIDDAHLVFHNLPKKNVYSWTSMITGYA 686

Query: 113 ECGQLDKAVELF 124
           + G+  +A+ELF
Sbjct: 687 QHGRGKEALELF 698


>gi|297798898|ref|XP_002867333.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313169|gb|EFH43592.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 792

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 234/553 (42%), Positives = 328/553 (59%), Gaps = 37/553 (6%)

Query: 12  VLAGFAK---QRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRL--- 65
           VL GF     + GK+K A  LF +  +PD+V+YN M+     N +  ++    F+ L   
Sbjct: 258 VLTGFISLYSKCGKIKMASTLFREFRRPDIVAYNAMIHGYTSNGETELS-LSLFKELMLS 316

Query: 66  -------------PIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYI 112
                        P+         I G+  K N       FL+     SVS +A+ + Y 
Sbjct: 317 GAKLKSSTLVSLVPVSGHLMLIYAIHGYSLKSN-------FLS---HTSVS-TALTTVYS 365

Query: 113 ECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNA 172
           +  +++ A +LF  +P KS+ +W AMISGY      +N   ED + L R M      PN 
Sbjct: 366 KLNEIESARKLFDESPEKSLPSWNAMISGY-----TQNGLTEDAISLFREMQNSEFSPNP 420

Query: 173 SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLE 232
            +++ +L  C+ L +L LGK VH LV  +         T LI MY KCG + +A +LF  
Sbjct: 421 VTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDF 480

Query: 233 IQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 292
           + +K+ VTWN MISGY  HG G++AL +F +M + G+ P  +TF+ +L AC+HAGLV  G
Sbjct: 481 MPKKNEVTWNTMISGYGLHGHGQEALTIFSEMLNSGIAPTPVTFLCVLYACSHAGLVKEG 540

Query: 293 IQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACR 352
            + F+SM++ YG      HY C+VD+LGRAG L  A+  I+ MP +P P+++ TLL ACR
Sbjct: 541 DEIFNSMIHRYGFEPSVKHYACVVDILGRAGHLQRALQFIEAMPIQPGPSVWETLLGACR 600

Query: 353 VHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPG 412
           +HK  +LA   +  LF L+P N  G +V L+NI++A + +   A +R + K+  + K PG
Sbjct: 601 IHKDTNLARTVSEKLFELDPDN-VGYHVLLSNIHSADRNYPQAATVRQTAKKRKLAKAPG 659

Query: 413 YSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQ 472
           Y+ IE+G   H F SGD+ HP++ +IHEKL++LE +M+ AGY P+ E ALH V EE +E 
Sbjct: 660 YTLIEIGETPHVFTSGDQSHPQVKAIHEKLEKLEGKMREAGYQPETELALHDVEEEEREL 719

Query: 473 LLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFH 532
           ++  HSE+LAIAFGLI    GT IR+ KNLRVC DCH ATK IS I +R I+VRD  RFH
Sbjct: 720 MVKVHSERLAIAFGLIATEPGTEIRIIKNLRVCLDCHTATKLISKITERVIVVRDANRFH 779

Query: 533 HFKDGTCSCGDYW 545
           HFKDG CSCGDYW
Sbjct: 780 HFKDGVCSCGDYW 792



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 92/342 (26%), Positives = 164/342 (47%), Gaps = 20/342 (5%)

Query: 22  KLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK-----DTASWNTM 76
           +++DA+++FD++P+ D + +N M+S    N +  V +   F+ L  +     DT +   +
Sbjct: 169 RVEDARKVFDRMPEKDTILWNTMISGYRKN-EMYVESIQVFRDLINESCTRLDTTTLLDI 227

Query: 77  ISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYI----ECGQLDKAVELFKVAPVKSV 132
           +    + + +     +     +    S   +++G+I    +CG++  A  LF+      +
Sbjct: 228 LPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMASTLFREFRRPDI 287

Query: 133 VAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGK 192
           VA+ AMI GY   G  E S     L L + ++  G +  +S+L S++    H   L L  
Sbjct: 288 VAYNAMIHGYTSNGETELS-----LSLFKELMLSGAKLKSSTLVSLVPVSGH---LMLIY 339

Query: 193 QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHG 252
            +H    KS     T+  T L ++Y K  ++E A KLF E   K + +WNAMISGY Q+G
Sbjct: 340 AIHGYSLKSNFLSHTSVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNG 399

Query: 253 KGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY 312
             E A+ LF +M++    P+ +T   +L AC   G + LG ++   +V      +     
Sbjct: 400 LTEDAISLFREMQNSEFSPNPVTITCILSACAQLGALSLG-KWVHDLVRSTDFESSIYVS 458

Query: 313 TCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVH 354
           T ++ +  + G + EA  L   MP K     + T++S   +H
Sbjct: 459 TALIGMYAKCGSIAEARRLFDFMP-KKNEVTWNTMISGYGLH 499



 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 96/377 (25%), Positives = 164/377 (43%), Gaps = 58/377 (15%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSD--DVVAAFDFFQRL----PIKDTASWN 74
           G +  A+++F  + +PDV  +N+++    +N      +A F   ++     P   T ++ 
Sbjct: 66  GAIYYARDIFLSVQRPDVFLFNVLMRGFSVNESPHSSLAVFAHLRKSTDLKPNSSTYAFA 125

Query: 75  -TMISGF--------VQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFK 125
            +  SGF        +  + +    D  L +        S ++  Y +  +++ A ++F 
Sbjct: 126 ISAASGFRDDRAGCVIHGQAIVDGCDSELLL-------GSNIVKMYFKFWRVEDARKVFD 178

Query: 126 VAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLG-IRPNASSLSSVLLGCSH 184
             P K  + W  MISGY K     N    + +++ R +I     R + ++L  +L   + 
Sbjct: 179 RMPEKDTILWNTMISGYRK-----NEMYVESIQVFRDLINESCTRLDTTTLLDILPAVAE 233

Query: 185 LSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAM 244
           L  L+LG Q+H L  K+        LT  IS+Y KCG ++ A  LF E +R D+V +NAM
Sbjct: 234 LQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMASTLFREFRRPDIVAYNAM 293

Query: 245 ISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGL---------------- 288
           I GY  +G+ E +L LF ++   G K  S T V+L+    H  L                
Sbjct: 294 IHGYTSNGETELSLSLFKELMLSGAKLKSSTLVSLVPVSGHLMLIYAIHGYSLKSNFLSH 353

Query: 289 --VDLGIQYFDSMVNDYGIAAK-----PD----HYTCMVDLLGRAGKLVEAVDLIKKM-- 335
             V   +    S +N+   A K     P+     +  M+    + G   +A+ L ++M  
Sbjct: 354 TSVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQN 413

Query: 336 -PFKPQPAIFGTLLSAC 351
             F P P     +LSAC
Sbjct: 414 SEFSPNPVTITCILSAC 430



 Score = 39.7 bits (91), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 1/85 (1%)

Query: 193 QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHG 252
           Q H  +       D + LT L       G +  A  +FL +QR DV  +N ++ G++ + 
Sbjct: 38  QTHAQIVLHGFRNDISLLTKLTQRLSDLGAIYYARDIFLSVQRPDVFLFNVLMRGFSVNE 97

Query: 253 KGEKALRLFDKM-KDEGMKPDSITF 276
               +L +F  + K   +KP+S T+
Sbjct: 98  SPHSSLAVFAHLRKSTDLKPNSSTY 122


>gi|359478499|ref|XP_003632122.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 577

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 224/534 (41%), Positives = 321/534 (60%), Gaps = 8/534 (1%)

Query: 13  LAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTAS 72
           L  F  + G LK A+ +F  +P+ DVV+ N M+S  L     V  A + F  +  +++ S
Sbjct: 51  LLDFYAKVGDLKCAKRVFMGMPRRDVVANNAMISA-LSKHGYVEEARNLFDNMTERNSCS 109

Query: 73  WNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKV-APVKS 131
           WN+MI+ + +  ++  AR +F   P K+ VSW+A+I GY +  QL  A ELF +    ++
Sbjct: 110 WNSMITCYCKLGDINSARLMFDCNPVKDVVSWNAIIDGYCKSKQLVAAQELFLLMGSARN 169

Query: 132 VVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLG 191
            V W  MIS Y++ G    +     + + + M    ++P   ++ S+L  C+HL +L +G
Sbjct: 170 SVTWNTMISAYVQCGEFGTA-----ISMFQQMQSENVKPTEVTMVSLLSACAHLGALDMG 224

Query: 192 KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQH 251
           + +H  +    L  D      LI MYCKCG LE A  +F  + RK++  WN++I G   +
Sbjct: 225 EWIHGYIRTKRLKIDVVLGNALIDMYCKCGALEAAIDVFHGLSRKNIFCWNSIIVGLGMN 284

Query: 252 GKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDH 311
           G+GE+A+  F  M+ EG+KPD +TFV +L  C+H+GL+  G +YF  M+  YG+    +H
Sbjct: 285 GRGEEAIAAFIVMEKEGIKPDGVTFVGILSGCSHSGLLSAGQRYFSEMLGVYGLEPGVEH 344

Query: 312 YTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLN 371
           Y CMVDLLGRAG L EA++LI+ MP KP   + G+LL AC++HK   L E     L  L+
Sbjct: 345 YGCMVDLLGRAGYLKEALELIRAMPMKPNSMVLGSLLRACQIHKDTKLGEQVTQQLLELD 404

Query: 372 PANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRV 431
           P +  G YV L+N+YA++ +WDDV   R  M +  V K PG S IEV  +VHEF +GD  
Sbjct: 405 PCD-GGNYVFLSNLYASLSRWDDVNTCRKLMIKRGVHKTPGCSSIEVNNIVHEFVAGDTS 463

Query: 432 HPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVP 491
           HP+   I+  L E+ K +K  G+VP+    LH + EE KE  + +HSE++A+AFGL+  P
Sbjct: 464 HPQFTQINAFLDEIAKELKGQGHVPNTANVLHDIEEEEKEGAIRYHSERIAVAFGLMSTP 523

Query: 492 LGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
            G  IRV KNLR C DCH A K IS   KREIIVRD  RFHHF++G+CSC DYW
Sbjct: 524 PGKTIRVVKNLRTCSDCHSAMKLISNAFKREIIVRDRKRFHHFRNGSCSCNDYW 577



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 90/350 (25%), Positives = 147/350 (42%), Gaps = 54/350 (15%)

Query: 98  EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGL 157
           E + +  + ++  Y + G L  A  +F   P + VVA  AMIS   K GYVE +      
Sbjct: 42  EYDMILQTGLLDFYAKVGDLKCAKRVFMGMPRRDVVANNAMISALSKHGYVEEA------ 95

Query: 158 KLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMY 217
              R +       N+ S +S++     L  +   +    L+F     KD  +   +I  Y
Sbjct: 96  ---RNLFDNMTERNSCSWNSMITCYCKLGDINSAR----LMFDCNPVKDVVSWNAIIDGY 148

Query: 218 CKCGDLEDACKLFLEI-QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITF 276
           CK   L  A +LFL +   ++ VTWN MIS Y Q G+   A+ +F +M+ E +KP  +T 
Sbjct: 149 CKSKQLVAAQELFLLMGSARNSVTWNTMISAYVQCGEFGTAISMFQQMQSENVKPTEVTM 208

Query: 277 VALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVD------ 330
           V+LL AC H G +D+G ++    +    +         ++D+  + G L  A+D      
Sbjct: 209 VSLLSACAHLGALDMG-EWIHGYIRTKRLKIDVVLGNALIDMYCKCGALEAAIDVFHGLS 267

Query: 331 ----------------------------LIKKMPFKPQPAIFGTLLSACRVHKRLDLAE- 361
                                       +++K   KP    F  +LS C     L   + 
Sbjct: 268 RKNIFCWNSIIVGLGMNGRGEEAIAAFIVMEKEGIKPDGVTFVGILSGCSHSGLLSAGQR 327

Query: 362 -FAAM-NLFNLNPA-NAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVV 408
            F+ M  ++ L P     GC V L      +K+  ++ R  + MK N++V
Sbjct: 328 YFSEMLGVYGLEPGVEHYGCMVDLLGRAGYLKEALELIRA-MPMKPNSMV 376



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 59/225 (26%), Positives = 96/225 (42%), Gaps = 34/225 (15%)

Query: 168 IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC 227
           + P+ +S S +L  C+     QLG+  H  + K     D    T L+  Y K GDL+ A 
Sbjct: 6   VLPSKTSFSLILRSCAISGEAQLGEAFHCQIMKMGFEYDMILQTGLLDFYAKVGDLKCAK 65

Query: 228 KLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEG-----------MKPDSITF 276
           ++F+ + R+DVV  NAMIS  ++HG  E+A  LFD M +              K   I  
Sbjct: 66  RVFMGMPRRDVVANNAMISALSKHGYVEEARNLFDNMTERNSCSWNSMITCYCKLGDINS 125

Query: 277 VALLLACNHAGLVDLGIQYFDSMVNDY----------------GIAAKPDHYTCMVDLLG 320
             L+  CN        +  ++++++ Y                G A     +  M+    
Sbjct: 126 ARLMFDCNPVK----DVVSWNAIIDGYCKSKQLVAAQELFLLMGSARNSVTWNTMISAYV 181

Query: 321 RAGKLVEAVDLIKKMP---FKPQPAIFGTLLSACRVHKRLDLAEF 362
           + G+   A+ + ++M     KP      +LLSAC     LD+ E+
Sbjct: 182 QCGEFGTAISMFQQMQSENVKPTEVTMVSLLSACAHLGALDMGEW 226


>gi|168042957|ref|XP_001773953.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162674797|gb|EDQ61301.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 905

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 223/532 (41%), Positives = 319/532 (59%), Gaps = 46/532 (8%)

Query: 54  DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK-------------- 99
           D+  A + F  +P +D  SWN +I+G+ ++++  +A  L+  M  +              
Sbjct: 380 DLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLS 439

Query: 100 ---NSVSWS----------------------AMISGYIECGQLDKAVELFKVAPVKSVVA 134
              NS +++                      A+++ Y  CG L +A  +F+    + V++
Sbjct: 440 ACANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVIS 499

Query: 135 WTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQV 194
           W +MI+G+ + G  E ++     KL + M    + P+  + +SVL GC +  +L+LGKQ+
Sbjct: 500 WNSMIAGHAQHGSYETAY-----KLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQI 554

Query: 195 HQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKG 254
           H  + +S L  D      LI+MY +CG L+DA  +F  +Q +DV++W AMI G A  G+ 
Sbjct: 555 HGRITESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGED 614

Query: 255 EKALRLFDKMKDEGMKP-DSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYT 313
            KA+ LF +M++EG +P D  TF ++L ACNHAGLV  G Q F SM ++YG+    +HY 
Sbjct: 615 MKAIELFWQMQNEGFRPPDGSTFTSILSACNHAGLVLEGYQIFSSMESEYGVLPTIEHYG 674

Query: 314 CMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPA 373
           C+V LLGRA +  EA  LI +MPF P  A++ TLL ACR+H  + LAE AA N   LN  
Sbjct: 675 CLVGLLGRARRFQEAETLINQMPFPPDAAVWETLLGACRIHGNIALAEHAANNALKLNAR 734

Query: 374 NAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHP 433
           N A  Y+ L+N+YAA  +WDDVA+IR  M+   + K PG SWIEV  ++HEF + DR HP
Sbjct: 735 NPA-VYILLSNVYAAAGRWDDVAKIRRVMEGRGIRKEPGRSWIEVDNIIHEFIAADRSHP 793

Query: 434 ELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLG 493
           E   I+ +LK L   M+ AGY PD +  LH +G+  +E  L  HSE+LAIA+GLIK P G
Sbjct: 794 ETAEIYAELKRLSVEMEEAGYFPDTQHVLHDLGKAHQETSLCTHSERLAIAYGLIKTPPG 853

Query: 494 TPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           TPIR+FKNLR+CGDCH A+K+IS +  REII RD+ RFH FK+G CSC DYW
Sbjct: 854 TPIRIFKNLRICGDCHTASKFISKLVGREIIARDSNRFHSFKNGKCSCEDYW 905



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 89/332 (26%), Positives = 166/332 (50%), Gaps = 16/332 (4%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK- 68
           NS+L+ + K  G L  A+++F  I   DVVSYN ML  +      V      F ++  + 
Sbjct: 167 NSLLSMYGKC-GDLPRARQVFAGISPRDVVSYNTMLG-LYAQKAYVKECLGLFGQMSSEG 224

Query: 69  ---DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVS----WSAMISGYIECGQLDKAV 121
              D  ++  ++  F     + + + +     E+   S     +A+++  + CG +D A 
Sbjct: 225 ISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAK 284

Query: 122 ELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLG 181
           + FK    + VV + A+I+   + G+   ++ +        M   G+  N ++  S+L  
Sbjct: 285 QAFKGIADRDVVVYNALIAALAQHGHNVEAFEQ-----YYRMRSDGVALNRTTYLSILNA 339

Query: 182 CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTW 241
           CS   +L+ GK +H  + +     D      LISMY +CGDL  A +LF  + ++D+++W
Sbjct: 340 CSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKRDLISW 399

Query: 242 NAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN 301
           NA+I+GYA+     +A+RL+ +M+ EG+KP  +TF+ LL AC ++     G    + ++ 
Sbjct: 400 NAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILR 459

Query: 302 DYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIK 333
             GI +       ++++  R G L+EA ++ +
Sbjct: 460 S-GIKSNGHLANALMNMYRRCGSLMEAQNVFE 490



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 79/320 (24%), Positives = 163/320 (50%), Gaps = 15/320 (4%)

Query: 25  DAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP----IKDTASWNTMISGF 80
           DA ++F ++P+ DV+S+N ++SC          AF  F+ +     I +  ++ ++++  
Sbjct: 80  DAHQVFKEMPRRDVISWNSLISCYAQQGFK-KKAFQLFEEMQNAGFIPNKITYISILTAC 138

Query: 81  VQKKNMAKAR----DLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWT 136
                +   +     +  A  +++    ++++S Y +CG L +A ++F     + VV++ 
Sbjct: 139 YSPAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYN 198

Query: 137 AMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQ 196
            M+  Y +  YV     ++ L L   M   GI P+  +  ++L   +  S L  GK++H+
Sbjct: 199 TMLGLYAQKAYV-----KECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHK 253

Query: 197 LVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEK 256
           L  +  L  D    T L++M  +CGD++ A + F  I  +DVV +NA+I+  AQHG   +
Sbjct: 254 LTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGIADRDVVVYNALIAALAQHGHNVE 313

Query: 257 ALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMV 316
           A   + +M+ +G+  +  T++++L AC+ +  ++ G +   S +++ G ++       ++
Sbjct: 314 AFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAG-KLIHSHISEDGHSSDVQIGNALI 372

Query: 317 DLLGRAGKLVEAVDLIKKMP 336
            +  R G L +A +L   MP
Sbjct: 373 SMYARCGDLPKARELFYTMP 392



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 78/290 (26%), Positives = 146/290 (50%), Gaps = 11/290 (3%)

Query: 69  DTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISGYIECGQLDKAVELF 124
           D A++  ++    +K+ + +A+ +   M E     +    + +I+ Y++C  +  A ++F
Sbjct: 26  DRATYVALLQNCTRKRLLPEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVLDAHQVF 85

Query: 125 KVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSH 184
           K  P + V++W ++IS Y + G+ + ++     +L   M   G  PN  +  S+L  C  
Sbjct: 86  KEMPRRDVISWNSLISCYAQQGFKKKAF-----QLFEEMQNAGFIPNKITYISILTACYS 140

Query: 185 LSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAM 244
            + L+ GK++H  + K+   +D      L+SMY KCGDL  A ++F  I  +DVV++N M
Sbjct: 141 PAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTM 200

Query: 245 ISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYG 304
           +  YAQ    ++ L LF +M  EG+ PD +T++ LL A     ++D G +     V + G
Sbjct: 201 LGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEE-G 259

Query: 305 IAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVH 354
           + +     T +V +  R G +  A    K +  +    ++  L++A   H
Sbjct: 260 LNSDIRVGTALVTMCVRCGDVDSAKQAFKGIADR-DVVVYNALIAALAQH 308



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 65/271 (23%), Positives = 115/271 (42%), Gaps = 35/271 (12%)

Query: 3   VKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFF 62
           +K+  +  + L    ++ G L +AQ +F+     DV+S+N M++    +      A+  F
Sbjct: 462 IKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQHG-SYETAYKLF 520

Query: 63  QRLPIK----DTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISGYIEC 114
           Q +  +    D  ++ +++SG    + +   + +   + E     +    +A+I+ YI C
Sbjct: 521 QEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRITESGLQLDVNLGNALINMYIRC 580

Query: 115 GQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAED--GLKLLRMMIGLGIR-PN 171
           G L  A  +F     + V++WTAMI G    G       ED   ++L   M   G R P+
Sbjct: 581 GSLQDARNVFHSLQHRDVMSWTAMIGGCADQG-------EDMKAIELFWQMQNEGFRPPD 633

Query: 172 ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMY-CKCGDLEDACKLF 230
            S+ +S+L  C+H   +  G Q    +F S   +    + P I  Y C  G L  A + F
Sbjct: 634 GSTFTSILSACNHAGLVLEGYQ----IFSS--MESEYGVLPTIEHYGCLVGLLGRA-RRF 686

Query: 231 LEIQR--------KDVVTWNAMISGYAQHGK 253
            E +          D   W  ++     HG 
Sbjct: 687 QEAETLINQMPFPPDAAVWETLLGACRIHGN 717


>gi|328774763|gb|AEB39781.1| pentatricopeptide repeat protein 79 [Funaria hygrometrica]
          Length = 820

 Score =  440 bits (1131), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 231/533 (43%), Positives = 323/533 (60%), Gaps = 15/533 (2%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRL----PIKDTASWNTM 76
           G +KDA+E+F+ +P  DV+++N M+   L++S  +  A   F R+       D  ++  +
Sbjct: 295 GAVKDAREVFECLPNRDVIAWNTMIGG-LVDSGQLEEAHGMFHRMLKECVAPDRVTYLAI 353

Query: 77  ISGFVQKKNMAKARDLFLAMPEKNSVS----WSAMISGYIECGQLDKAVELFKVAPVKSV 132
           +S   +   +A  +++     +   VS     +A+I+ Y + G +  A ++F   P + V
Sbjct: 354 LSACARPGGLACGKEIHARAVKDGLVSDVRFGNALINMYSKAGSMKDARQVFDRMPKRDV 413

Query: 133 VAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGK 192
           V+WTA++ GY   G V  S++       + M+  G+  N  +   VL  CS+  +L+ GK
Sbjct: 414 VSWTALVGGYADCGQVVESFS-----TFKKMLQQGVEANKITYMCVLKACSNPVALKWGK 468

Query: 193 QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHG 252
           ++H  V K+ +  D      L+SMY KCG +EDA ++   +  +DVVTWN +I G AQ+G
Sbjct: 469 EIHAEVVKAGIFADLAVANALMSMYFKCGSVEDAIRVSEGMSTRDVVTWNTLIGGLAQNG 528

Query: 253 KGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY 312
           +G +AL+ F+ MK E M+P++ TFV ++ AC    LV+ G + F SM  DYGI     HY
Sbjct: 529 RGLEALQKFEVMKSEEMRPNATTFVNVMSACRVRNLVEEGRRQFASMRKDYGIVPTEKHY 588

Query: 313 TCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNP 372
            CMVD+L RAG L EA D+I  MPFKP  A++G LL+ACR H  +++ E AA     L P
Sbjct: 589 ACMVDILARAGHLGEAEDVILTMPFKPSAAMWGALLAACRAHGNVEIGEQAAEQCLKLEP 648

Query: 373 ANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVH 432
            NA G YV L+ IYAA   W DVA++R  MKE  V K PG SWIEV   VH F +GD+ H
Sbjct: 649 QNA-GTYVSLSFIYAAAGMWRDVAKLRKLMKERGVKKEPGRSWIEVAGEVHSFVAGDQSH 707

Query: 433 PELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPL 492
           P    I+ +L+ L K++K  GYVPD  F +H + +E KE+ +  HSEKLAIA+GLI  P 
Sbjct: 708 PRTEEIYSELEALTKQIKSLGYVPDTRFVMHDLDQEGKERAVCHHSEKLAIAYGLISTPP 767

Query: 493 GTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
            TPIRV KNLRVC DCH ATK+IS I  REII RD  RFHHFK+G CSCGDYW
Sbjct: 768 ETPIRVSKNLRVCTDCHTATKFISKITGREIIARDAHRFHHFKNGECSCGDYW 820



 Score =  151 bits (382), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 91/323 (28%), Positives = 163/323 (50%), Gaps = 13/323 (4%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNS--DDVVAAFDFFQRLPIK-DTASWNTMI 77
           G + +A+ LFDK     VVS+N+M+S         +    F   Q+  ++ D  ++ +++
Sbjct: 93  GSVNEARRLFDKFSNKSVVSWNVMISGYAHRGLGQEAFNLFTLMQQEGLEPDKFTFVSIL 152

Query: 78  SGFVQKKNMAKARDLFLAMPE----KNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVV 133
           S       +   R++ + + E     N+   +A+IS Y +CG +  A  +F     +  V
Sbjct: 153 SACSSPAALNWGREVHVRVMEAGLANNATVGNALISMYAKCGSVRDARRVFDAMASRDEV 212

Query: 134 AWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ 193
           +WT +   Y + GY     A++ LK    M+  G+RP+  +  +VL  C  L++L+ GKQ
Sbjct: 213 SWTTLTGAYAESGY-----AQESLKTYHAMLQEGVRPSRITYMNVLSACGSLAALEKGKQ 267

Query: 194 VHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGK 253
           +H  + +S    D    T L  MY KCG ++DA ++F  +  +DV+ WN MI G    G+
Sbjct: 268 IHAQIVESEHHSDVRVSTALTKMYIKCGAVKDAREVFECLPNRDVIAWNTMIGGLVDSGQ 327

Query: 254 GEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYT 313
            E+A  +F +M  E + PD +T++A+L AC   G +  G +     V D G+ +      
Sbjct: 328 LEEAHGMFHRMLKECVAPDRVTYLAILSACARPGGLACGKEIHARAVKD-GLVSDVRFGN 386

Query: 314 CMVDLLGRAGKLVEAVDLIKKMP 336
            ++++  +AG + +A  +  +MP
Sbjct: 387 ALINMYSKAGSMKDARQVFDRMP 409



 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 77/265 (29%), Positives = 131/265 (49%), Gaps = 17/265 (6%)

Query: 46  SCILLNSDDVVAAFDFFQRLPIK----DTASWNTMISGFVQKKNMAKARDL------FLA 95
           S I  ++D   A  D  Q L  K    D+  +  ++   V+ K++A  + +      F  
Sbjct: 16  SMIPTSTDGWYAPADVLQYLHQKGSQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRFGM 75

Query: 96  MPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAED 155
            P  N    + ++  Y+ CG +++A  LF     KSVV+W  MISGY   G       ++
Sbjct: 76  KP--NVYIINTLLKLYVHCGSVNEARRLFDKFSNKSVVSWNVMISGYAHRGL-----GQE 128

Query: 156 GLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLIS 215
              L  +M   G+ P+  +  S+L  CS  ++L  G++VH  V ++ L  + T    LIS
Sbjct: 129 AFNLFTLMQQEGLEPDKFTFVSILSACSSPAALNWGREVHVRVMEAGLANNATVGNALIS 188

Query: 216 MYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSIT 275
           MY KCG + DA ++F  +  +D V+W  +   YA+ G  +++L+ +  M  EG++P  IT
Sbjct: 189 MYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYAESGYAQESLKTYHAMLQEGVRPSRIT 248

Query: 276 FVALLLACNHAGLVDLGIQYFDSMV 300
           ++ +L AC     ++ G Q    +V
Sbjct: 249 YMNVLSACGSLAALEKGKQIHAQIV 273



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 86/163 (52%), Gaps = 1/163 (0%)

Query: 178 VLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKD 237
           +L  C     L +GKQVH+ + +  +  +   +  L+ +Y  CG + +A +LF +   K 
Sbjct: 50  LLQSCVKAKDLAVGKQVHEHILRFGMKPNVYIINTLLKLYVHCGSVNEARRLFDKFSNKS 109

Query: 238 VVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFD 297
           VV+WN MISGYA  G G++A  LF  M+ EG++PD  TFV++L AC+    ++ G +   
Sbjct: 110 VVSWNVMISGYAHRGLGQEAFNLFTLMQQEGLEPDKFTFVSILSACSSPAALNWGRE-VH 168

Query: 298 SMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQ 340
             V + G+A        ++ +  + G + +A  +   M  + +
Sbjct: 169 VRVMEAGLANNATVGNALISMYAKCGSVRDARRVFDAMASRDE 211


>gi|225449798|ref|XP_002272111.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 849

 Score =  439 bits (1130), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 239/550 (43%), Positives = 336/550 (61%), Gaps = 16/550 (2%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQ 63
           ++ VN ++ L     + G +  A+ +FD++    VVS+N M+   + N D   AA + FQ
Sbjct: 308 ESFVNVSTALVDMYSKCGSVGTARLIFDRMTGKTVVSWNSMIDGYVQNGDPG-AAMEIFQ 366

Query: 64  RLPIKDTASWNTMISGFVQK----KNMAKAR---DLFLAMPEKNSVS-WSAMISGYIECG 115
           ++  +     N  + G +       ++ + R    L   +   + VS  +++IS Y +C 
Sbjct: 367 KMMDEQVEMTNVTVMGALHACADLGDVEQGRFVHKLLDQLELGSDVSVMNSLISMYSKCK 426

Query: 116 QLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSL 175
           ++D A E+F+    K++V+W AMI      GY +N    + +     M    I+P++ ++
Sbjct: 427 RVDIAAEIFENLQHKTLVSWNAMI-----LGYAQNGRINEAIDYFCKMQLQNIKPDSFTM 481

Query: 176 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR 235
            SV+   + LS L   K +H LV ++ L K+    T L+ MY KCG +  A KLF  +  
Sbjct: 482 VSVIPALAELSVLPQAKWIHGLVIRTCLDKNVFVATALVDMYAKCGAVHTARKLFDMMDE 541

Query: 236 KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQY 295
           + V TWNAMI GY  HG G+ AL LF+KMK E +KP+ +TF+ +L AC+H+GLV+ G QY
Sbjct: 542 RHVTTWNAMIDGYGTHGLGKAALELFEKMKKEVIKPNEVTFLCVLSACSHSGLVEEGFQY 601

Query: 296 FDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHK 355
           F SM  DYG+    DHY  MVDLLGRA +L EA D I+KMP +P  ++FG +L ACR+HK
Sbjct: 602 FGSMKKDYGLEPAMDHYGAMVDLLGRANRLNEAWDFIQKMPIEPAISVFGAMLGACRIHK 661

Query: 356 RLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSW 415
            ++L E AA  +F+L+P +  G +V LANIYA    WD VAR+R +M++  + K PG+S 
Sbjct: 662 NVELGEKAANRIFDLDP-DDGGYHVLLANIYATASMWDKVARVRTTMEKKGIQKTPGWSV 720

Query: 416 IEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLL 475
           +E+   VH F SG   HP+   I+  L+ L  R+K AGY+PD   ++H V + VKEQLL 
Sbjct: 721 VELQNEVHTFYSGTTSHPQAKKIYAFLETLGNRIKAAGYMPDTN-SVHDVEDVVKEQLLN 779

Query: 476 FHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFK 535
            HSEKLAIAF L+    GT I + KNLRVCGDCH ATKYIS + KREIIVRD  RFHHFK
Sbjct: 780 SHSEKLAIAFSLLNTSPGTTIHLRKNLRVCGDCHNATKYISLVTKREIIVRDMRRFHHFK 839

Query: 536 DGTCSCGDYW 545
           DGTCSCGDYW
Sbjct: 840 DGTCSCGDYW 849



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 87/367 (23%), Positives = 173/367 (47%), Gaps = 28/367 (7%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNS--DDVVAAFDFFQRL------PIKDTAS 72
           G L +A  +F  I       Y+ ML     NS  DD V+   FF R+      P+    +
Sbjct: 123 GSLHEAARVFQPIEDKIDELYHTMLKGYARNSSLDDAVS---FFCRMRYDGVRPVVYNFT 179

Query: 73  WNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMISGYIECGQLDKAVELFKVAP 128
           +   + G     ++ K +++   +       N  + + +++ Y +C  +++A ++F   P
Sbjct: 180 YLLKVCG--DNADLRKGKEIHCQLIVNGFASNVFAMTGVVNMYAKCRLVEEAYKMFDRMP 237

Query: 129 VKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSL 188
            + +V W  +ISGY      +N + +  L+L+  M   G RP++ ++ S+L   + + SL
Sbjct: 238 ERDLVCWNTIISGY-----AQNGFGKTALELVLRMQEEGKRPDSITIVSILPAVADVGSL 292

Query: 189 QLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGY 248
           ++G+ +H    ++         T L+ MY KCG +  A  +F  +  K VV+WN+MI GY
Sbjct: 293 RIGRSIHGYSMRAGFESFVNVSTALVDMYSKCGSVGTARLIFDRMTGKTVVSWNSMIDGY 352

Query: 249 AQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK 308
            Q+G    A+ +F KM DE ++  ++T +  L AC   G V+ G ++   +++   + + 
Sbjct: 353 VQNGDPGAAMEIFQKMMDEQVEMTNVTVMGALHACADLGDVEQG-RFVHKLLDQLELGSD 411

Query: 309 PDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSAC---RVHKRLDLAEFAAM 365
                 ++ +  +  ++  A ++ + +  K   +    +L      R+++ +D   F  M
Sbjct: 412 VSVMNSLISMYSKCKRVDIAAEIFENLQHKTLVSWNAMILGYAQNGRINEAIDY--FCKM 469

Query: 366 NLFNLNP 372
            L N+ P
Sbjct: 470 QLQNIKP 476



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 69/238 (28%), Positives = 125/238 (52%), Gaps = 14/238 (5%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI 164
           + ++S + + G L +A  +F+    K    +  M+ GY +     NS  +D +     M 
Sbjct: 113 TKLVSLFCKFGSLHEAARVFQPIEDKIDELYHTMLKGYAR-----NSSLDDAVSFFCRMR 167

Query: 165 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 224
             G+RP   + + +L  C   + L+ GK++H  +  +    +  A+T +++MY KC  +E
Sbjct: 168 YDGVRPVVYNFTYLLKVCGDNADLRKGKEIHCQLIVNGFASNVFAMTGVVNMYAKCRLVE 227

Query: 225 DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 284
           +A K+F  +  +D+V WN +ISGYAQ+G G+ AL L  +M++EG +PDSIT V++L A  
Sbjct: 228 EAYKMFDRMPERDLVCWNTIISGYAQNGFGKTALELVLRMQEEGKRPDSITIVSILPAVA 287

Query: 285 HAGLVDLGIQYFDSMVNDYGIAAKPDHY----TCMVDLLGRAGKLVEAVDLIKKMPFK 338
             G + +G       ++ Y + A  + +    T +VD+  + G +  A  +  +M  K
Sbjct: 288 DVGSLRIG-----RSIHGYSMRAGFESFVNVSTALVDMYSKCGSVGTARLIFDRMTGK 340



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 76/148 (51%), Gaps = 4/148 (2%)

Query: 192 KQVHQ---LVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGY 248
           K++HQ   L+ K+ L  +    T L+S++CK G L +A ++F  I+ K    ++ M+ GY
Sbjct: 91  KELHQFIPLIIKNGLYSEHLFQTKLVSLFCKFGSLHEAARVFQPIEDKIDELYHTMLKGY 150

Query: 249 AQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK 308
           A++   + A+  F +M+ +G++P    F  LL  C     +  G +    ++ + G A+ 
Sbjct: 151 ARNSSLDDAVSFFCRMRYDGVRPVVYNFTYLLKVCGDNADLRKGKEIHCQLIVN-GFASN 209

Query: 309 PDHYTCMVDLLGRAGKLVEAVDLIKKMP 336
               T +V++  +   + EA  +  +MP
Sbjct: 210 VFAMTGVVNMYAKCRLVEEAYKMFDRMP 237


>gi|224067848|ref|XP_002302563.1| predicted protein [Populus trichocarpa]
 gi|222844289|gb|EEE81836.1| predicted protein [Populus trichocarpa]
          Length = 514

 Score =  439 bits (1129), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 225/518 (43%), Positives = 321/518 (61%), Gaps = 17/518 (3%)

Query: 37  DVVSYN-IMLSCILLNSDDVVAAFDFFQRLPIKDTA----SWNTMISGFVQKKNMAKARD 91
           D VS+N ++L C+    ++   A  FFQ++  +D      +  ++++ F   K M  A  
Sbjct: 5   DEVSWNSLILGCVREGFEE--DALSFFQKMRSRDMKIDEYTLPSVLNSFASMKVMQNAIS 62

Query: 92  LFLAMPEKNSVSW----SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGY 147
           +   + +    ++    +A+I  Y + G+LD A+ +F     K VV+WT++++GY     
Sbjct: 63  VHCLIIKTGFEAYKLVNNALIDMYAKQGKLDCAIMVFSKMVDKDVVSWTSLVTGY----- 117

Query: 148 VENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDT 207
             N   E+ +KL   M   G+ P+  +++SVL  C+ L+ +  G+Q+H  + KS L    
Sbjct: 118 SHNGSYEEAIKLFCKMRISGVYPDQIAVASVLSACAELTVMDFGQQIHATLVKSGLESSL 177

Query: 208 TALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE 267
           +    L++MY KCG + DA + F  +  +DV++W A+I GYAQ+G+G+ +L+ +D+M   
Sbjct: 178 SVDNSLVTMYAKCGSIVDANRAFDNMPTRDVISWTALIVGYAQNGRGKHSLQFYDQMIAT 237

Query: 268 GMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVE 327
           G KPD ITF+ LL AC+H GL+  G  YF++M   YGI   P+HY CM+DLLGR+GKL E
Sbjct: 238 GTKPDYITFIGLLFACSHNGLLGSGRAYFEAMDKVYGIKPGPEHYACMIDLLGRSGKLAE 297

Query: 328 AVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYA 387
           A  L+ +M   P   ++  LL+ACRVHK L+L E AA NLF L P N+   YV L+N+Y+
Sbjct: 298 AKGLLNQMVVAPDAVVWKALLAACRVHKELELGEMAAKNLFELEPMNSMP-YVMLSNMYS 356

Query: 388 AMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEK 447
           A  KW+D ARIR  M+   + K PGYSWIE  + V  F S DR HP    I+ K+ E+  
Sbjct: 357 AAGKWEDAARIRRLMRSRGICKEPGYSWIETNSKVSTFMSEDRNHPLRNEIYSKIDEIIM 416

Query: 448 RMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGD 507
            +K AGYVPD+ FALH   +EVKE  L +HSEKLA+AFGL+ VP G PIR+FKNLRVCGD
Sbjct: 417 LIKEAGYVPDMSFALHDTDDEVKELGLAYHSEKLAVAFGLLTVPQGAPIRIFKNLRVCGD 476

Query: 508 CHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           CH A KY S +  R II+RD+  FHHF +G CSCGDYW
Sbjct: 477 CHTAMKYTSKVYARHIILRDSNCFHHFTEGRCSCGDYW 514



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 61/256 (23%), Positives = 116/256 (45%), Gaps = 17/256 (6%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK- 68
           N+++  +AKQ GKL  A  +F K+   DVVS+  +++    N      A   F ++ I  
Sbjct: 80  NALIDMYAKQ-GKLDCAIMVFSKMVDKDVVSWTSLVTGYSHNG-SYEEAIKLFCKMRISG 137

Query: 69  ---DTASWNTMISGFVQKKNMAKARDLFLAMPE---KNSVSW-SAMISGYIECGQLDKAV 121
              D  +  +++S   +   M   + +   + +   ++S+S  +++++ Y +CG +  A 
Sbjct: 138 VYPDQIAVASVLSACAELTVMDFGQQIHATLVKSGLESSLSVDNSLVTMYAKCGSIVDAN 197

Query: 122 ELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLG 181
             F   P + V++WTA+I      GY +N   +  L+    MI  G +P+  +   +L  
Sbjct: 198 RAFDNMPTRDVISWTALI-----VGYAQNGRGKHSLQFYDQMIATGTKPDYITFIGLLFA 252

Query: 182 CSHLSSLQLGKQVHQLVFKSPLCK-DTTALTPLISMYCKCGDLEDACKLFLE-IQRKDVV 239
           CSH   L  G+   + + K    K        +I +  + G L +A  L  + +   D V
Sbjct: 253 CSHNGLLGSGRAYFEAMDKVYGIKPGPEHYACMIDLLGRSGKLAEAKGLLNQMVVAPDAV 312

Query: 240 TWNAMISGYAQHGKGE 255
            W A+++    H + E
Sbjct: 313 VWKALLAACRVHKELE 328


>gi|328774755|gb|AEB39777.1| pentatricopeptide repeat protein 91 [Funaria hygrometrica]
          Length = 890

 Score =  439 bits (1129), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 226/557 (40%), Positives = 338/557 (60%), Gaps = 19/557 (3%)

Query: 1   MNVKTTVNWNSVLAGFAKQ----RGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVV 56
           M+ +  ++W++++AG+A+     +  L +  +L +++ +  V    +    IL  +  V 
Sbjct: 341 MSKRDVISWSAMIAGYAQSGYQDKESLDEVFQLLERMRREGVFPNKVTFMSIL-KACSVH 399

Query: 57  AAFDFFQRLPIK--------DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMI 108
            A +  +++  +        D +    + + + +  ++ +A  +F  M  KN V+W++++
Sbjct: 400 GALEQGRQIHAEISKVGFESDRSLQTAIFNMYAKCGSIYEAEQVFSKMENKNVVAWASLL 459

Query: 109 SGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGI 168
           + YI+CG L  A ++F     ++VV+W  MI+GY + G +   +     +LL  M   G 
Sbjct: 460 TMYIKCGDLTSAEKVFSEMSTRNVVSWNLMIAGYAQSGDIAKVF-----ELLSSMKVEGF 514

Query: 169 RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK 228
           +P+  ++ S+L  C  LS+L+ GK VH    K  L  DT   T LI MY KCG++ +A  
Sbjct: 515 QPDRVTIISILEACGALSALERGKLVHAEAVKLGLESDTVVATSLIGMYSKCGEVTEART 574

Query: 229 LFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGL 288
           +F +I  +D V WNAM++GY QHG G +A+ LF +M  E + P+ ITF A++ AC  AGL
Sbjct: 575 VFDKISNRDTVAWNAMLAGYGQHGIGPEAVDLFKRMLKERVPPNEITFTAVISACGRAGL 634

Query: 289 VDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLL 348
           V  G + F  M  D+ +     HY CMVDLLGRAG+L EA + I++MP +P  +++  LL
Sbjct: 635 VQEGREIFRIMQEDFRMKPGKQHYGCMVDLLGRAGRLQEAEEFIQRMPCEPDISVWHALL 694

Query: 349 SACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVV 408
            AC+ H  + LAE+AA ++  L P+NA+  YV L+NIYA   +WDD  ++R  M +  + 
Sbjct: 695 GACKSHDNVQLAEWAAHHILRLEPSNAS-VYVTLSNIYAQAGRWDDSTKVRKVMDDKGLK 753

Query: 409 KMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEE 468
           K  G S IE+   +H F + D  HPE+ SIH +L+ L K MK AGY PD+ F LH V E 
Sbjct: 754 KDRGESSIEIDGRIHTFVAEDCAHPEIDSIHAELEMLTKEMKEAGYTPDMRFVLHDVDEV 813

Query: 469 VKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDT 528
            KE+ L  HSEKLAIA+GL+K P GTPIR+ KNLRVCGDCH ATK+IS I KREI+ RD 
Sbjct: 814 QKERALCHHSEKLAIAYGLLKTPPGTPIRIMKNLRVCGDCHTATKFISKIRKREIVARDA 873

Query: 529 TRFHHFKDGTCSCGDYW 545
            RFH+FK+GTCSCGD+W
Sbjct: 874 NRFHYFKNGTCSCGDFW 890



 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 88/329 (26%), Positives = 163/329 (49%), Gaps = 50/329 (15%)

Query: 54  DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSW----- 104
           DV +    F+R+ ++D  +W++MI+ +    + AKA D F  M     E N +++     
Sbjct: 128 DVASVEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMKDANIEPNRITFLSILK 187

Query: 105 ------------------------------SAMISGYIECGQLDKAVELFKVAPVKSVVA 134
                                         +A+I+ Y +CG++  A E+F+    ++VV+
Sbjct: 188 ACNNYSMLEKAREIHTVVKASGMETDVAVATALITMYSKCGEISLACEIFQKMKERNVVS 247

Query: 135 WTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQV 194
           WTA+I         ++    +  +L   M+  GI PNA +  S+L  C+   +L  G+++
Sbjct: 248 WTAIIQ-----ANAQHRKLNEAFELYEKMLQAGISPNAVTFVSLLNSCNTPEALNRGRRI 302

Query: 195 HQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKG 254
           H  + +  L  D      LI+MYCKC  ++DA + F  + ++DV++W+AMI+GYAQ G  
Sbjct: 303 HSHISERGLETDVVVANALITMYCKCNCIQDARETFDRMSKRDVISWSAMIAGYAQSGYQ 362

Query: 255 EK-----ALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKP 309
           +K       +L ++M+ EG+ P+ +TF+++L AC+  G ++ G Q   + ++  G  +  
Sbjct: 363 DKESLDEVFQLLERMRREGVFPNKVTFMSILKACSVHGALEQGRQ-IHAEISKVGFESDR 421

Query: 310 DHYTCMVDLLGRAGKLVEAVDLIKKMPFK 338
              T + ++  + G + EA  +  KM  K
Sbjct: 422 SLQTAIFNMYAKCGSIYEAEQVFSKMENK 450



 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 116/420 (27%), Positives = 183/420 (43%), Gaps = 99/420 (23%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  +  V+W +++   A+ R KL +A EL++K+ Q  + S N +    LLNS +   A +
Sbjct: 240 MKERNVVSWTAIIQANAQHR-KLNEAFELYEKMLQAGI-SPNAVTFVSLLNSCNTPEALN 297

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
             +R            I   + ++ +           E + V  +A+I+ Y +C  +  A
Sbjct: 298 RGRR------------IHSHISERGL-----------ETDVVVANALITMYCKCNCIQDA 334

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLL 180
            E F     + V++W+AMI+GY + GY +    ++  +LL  M   G+ PN  +  S+L 
Sbjct: 335 RETFDRMSKRDVISWSAMIAGYAQSGYQDKESLDEVFQLLERMRREGVFPNKVTFMSILK 394

Query: 181 GCSHLSSLQLGKQVH-------------------------------QLVFKSPLCKDTTA 209
            CS   +L+ G+Q+H                               + VF     K+  A
Sbjct: 395 ACSVHGALEQGRQIHAEISKVGFESDRSLQTAIFNMYAKCGSIYEAEQVFSKMENKNVVA 454

Query: 210 LTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGM 269
              L++MY KCGDL  A K+F E+  ++VV+WN MI+GYAQ G   K   L   MK EG 
Sbjct: 455 WASLLTMYIKCGDLTSAEKVFSEMSTRNVVSWNLMIAGYAQSGDIAKVFELLSSMKVEGF 514

Query: 270 KPDSITFVALLLACN-----------HAGLVDLGIQ------------------------ 294
           +PD +T +++L AC            HA  V LG++                        
Sbjct: 515 QPDRVTIISILEACGALSALERGKLVHAEAVKLGLESDTVVATSLIGMYSKCGEVTEART 574

Query: 295 YFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM---PFKPQPAIFGTLLSAC 351
            FD + N   +A     +  M+   G+ G   EAVDL K+M      P    F  ++SAC
Sbjct: 575 VFDKISNRDTVA-----WNAMLAGYGQHGIGPEAVDLFKRMLKERVPPNEITFTAVISAC 629



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 110/483 (22%), Positives = 208/483 (43%), Gaps = 77/483 (15%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI 164
           +++I+ Y + G +    ++F+   ++ VV W++MI+ Y       N+           M 
Sbjct: 117 NSLINFYSKFGDVASVEQVFRRMTLRDVVTWSSMIAAY-----AGNNHPAKAFDTFERMK 171

Query: 165 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 224
              I PN  +  S+L  C++ S L+  +++H +V  S +  D    T LI+MY KCG++ 
Sbjct: 172 DANIEPNRITFLSILKACNNYSMLEKAREIHTVVKASGMETDVAVATALITMYSKCGEIS 231

Query: 225 DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 284
            AC++F +++ ++VV+W A+I   AQH K  +A  L++KM   G+ P+++TFV+LL +CN
Sbjct: 232 LACEIFQKMKERNVVSWTAIIQANAQHRKLNEAFELYEKMLQAGISPNAVTFVSLLNSCN 291

Query: 285 HAGLVDLGIQYFDSMVNDYGIA-----------------------------AKPD--HYT 313
               ++ G +   S +++ G+                              +K D   ++
Sbjct: 292 TPEALNRG-RRIHSHISERGLETDVVVANALITMYCKCNCIQDARETFDRMSKRDVISWS 350

Query: 314 CMVDLLGRAG-----KLVEAVDLIKKMPFK---PQPAIFGTLLSACRVHKRLDLAEFAAM 365
            M+    ++G      L E   L+++M  +   P    F ++L AC VH  L+       
Sbjct: 351 AMIAGYAQSGYQDKESLDEVFQLLERMRREGVFPNKVTFMSILKACSVHGALEQGRQIHA 410

Query: 366 NLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTV---V 422
            +  +   +       + N+YA      +  ++   M+  NVV     +W  + T+    
Sbjct: 411 EISKVGFESDRSLQTAIFNMYAKCGSIYEAEQVFSKMENKNVV-----AWASLLTMYIKC 465

Query: 423 HEFRSGDRVHPELVSIH-----------------EKLKELEKRMKLAGYVPD---LEFAL 462
            +  S ++V  E+ + +                  K+ EL   MK+ G+ PD   +   L
Sbjct: 466 GDLTSAEKVFSEMSTRNVVSWNLMIAGYAQSGDIAKVFELLSSMKVEGFQPDRVTIISIL 525

Query: 463 HAVGE-EVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKR 521
            A G     E+  L H+E + +      V   + I ++     CG+   A      I  R
Sbjct: 526 EACGALSALERGKLVHAEAVKLGLESDTVVATSLIGMYSK---CGEVTEARTVFDKISNR 582

Query: 522 EII 524
           + +
Sbjct: 583 DTV 585



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 53/207 (25%), Positives = 112/207 (54%), Gaps = 2/207 (0%)

Query: 154 EDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPL 213
           ++ ++LL ++   G+  N+++   ++  C+ L   + GK VH+ + +  L  D      L
Sbjct: 60  KEAIQLLGIIKQRGLLVNSNTYGCIIEHCAKLRRFEDGKMVHKQLDELGLAIDIYLGNSL 119

Query: 214 ISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDS 273
           I+ Y K GD+    ++F  +  +DVVTW++MI+ YA +    KA   F++MKD  ++P+ 
Sbjct: 120 INFYSKFGDVASVEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMKDANIEPNR 179

Query: 274 ITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIK 333
           ITF+++L ACN+  +++   +   ++V   G+       T ++ +  + G++  A ++ +
Sbjct: 180 ITFLSILKACNNYSMLEKA-REIHTVVKASGMETDVAVATALITMYSKCGEISLACEIFQ 238

Query: 334 KMPFKPQPAIFGTLLSACRVHKRLDLA 360
           KM  +     +  ++ A   H++L+ A
Sbjct: 239 KMK-ERNVVSWTAIIQANAQHRKLNEA 264


>gi|242041629|ref|XP_002468209.1| hypothetical protein SORBIDRAFT_01g041740 [Sorghum bicolor]
 gi|241922063|gb|EER95207.1| hypothetical protein SORBIDRAFT_01g041740 [Sorghum bicolor]
          Length = 635

 Score =  439 bits (1129), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 229/583 (39%), Positives = 332/583 (56%), Gaps = 48/583 (8%)

Query: 5   TTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQR 64
           +T+  N +L   +     L DA  L   +P  DV SYN +++ +  +   + +A   F R
Sbjct: 59  STLLSNRILHLLSSHPATLPDALALLSSLPSTDVCSYNTLVAALGRSPRGLASARALFDR 118

Query: 65  LPIKDTASWNTMISGFVQKKNMAKARDLFLAM---P------------------------ 97
           +P +D  SW+ ++S   +      A  ++  M   P                        
Sbjct: 119 MPRRDHFSWSAIVSAHARHGQPRAALAIYRRMLREPGSAGVDNEFTASSALAAATAARCA 178

Query: 98  ---------------EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGY 142
                          + ++V WSA+   Y +CG++D A  +F   PV+ VV+WTAM+  Y
Sbjct: 179 RAGRELHCHVVRRGIDADAVVWSALADMYAKCGRVDDARSVFDRMPVRDVVSWTAMVERY 238

Query: 143 MKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSP 202
                 +     +G +L   M+  GI+PN  + + VL  C+  +S +LGKQVH  + KS 
Sbjct: 239 F-----DARRDGEGFRLFVRMLRSGIQPNEFTYAGVLRACAEFTSEKLGKQVHGRMTKSR 293

Query: 203 LCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFD 262
                 A + L+ MY K GD+  A ++F  + + D+V+W AMISGYAQ+G+ ++ALR FD
Sbjct: 294 AGDSCFAESALVHMYSKYGDMGTAVRVFRGMPKLDLVSWTAMISGYAQNGQPDEALRYFD 353

Query: 263 KMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRA 322
            +   G +PD +TFV +L AC HAGLVD G+  F S+ ++YGI    DHY C++DLL R+
Sbjct: 354 MLLRSGCRPDHVTFVGVLSACAHAGLVDKGLSIFHSIKDEYGIEHTADHYACVIDLLSRS 413

Query: 323 GKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQL 382
           G    A ++I  M  KP   ++ +LL  CR+HK + LA +AA  LF + P N A  YV L
Sbjct: 414 GLFERAEEMINTMSVKPNKFLWASLLGGCRIHKNVRLARWAAEALFEIEPENPA-TYVTL 472

Query: 383 ANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKL 442
           ANIYA++  +D+V   R  M+   + KMP  SWIEVGT +H F  GD++HP+   ++  L
Sbjct: 473 ANIYASVGLFDEVENTRRIMELKGITKMPASSWIEVGTRMHVFLVGDKLHPQAEQVYALL 532

Query: 443 KELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNL 502
           K+L  +M+  GYV D  F LH V +E K+Q + +HSE+LA+AFG+I  P G PI+VFKNL
Sbjct: 533 KKLYVKMREEGYVADTGFVLHDVEDEQKQQDIGYHSERLAVAFGIIATPKGAPIKVFKNL 592

Query: 503 RVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           R+CGDCH   K IS I +REIIVRD+ RFHHFK+G+CSC DYW
Sbjct: 593 RICGDCHTTIKLISKIVQREIIVRDSNRFHHFKNGSCSCRDYW 635


>gi|414887370|tpg|DAA63384.1| TPA: hypothetical protein ZEAMMB73_689576 [Zea mays]
          Length = 802

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 226/553 (40%), Positives = 330/553 (59%), Gaps = 18/553 (3%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELF-----DKIPQPDVVSYNIMLSC----ILLNSDD 54
           K  V WN++++G+    G   +A ELF     +++P  +    +++ +C    +  +   
Sbjct: 257 KFDVVWNAMISGYV-HSGMAVEAFELFRRMVLERVPLDEFTFTSVLSACANVGLFAHGKS 315

Query: 55  VVAAFDFFQR--LPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYI 112
           V       Q   +P       N +++ + +  N+A AR +F  M  K+ VSW+ ++SGY+
Sbjct: 316 VHGQIIRLQPNFVPEAALPVNNALVTFYSKCGNIAVARRIFDNMTLKDVVSWNTILSGYV 375

Query: 113 ECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNA 172
           E   LDKAVE+F+  P K+ ++W  M+SGY+  G+     AED LKL   M    ++P  
Sbjct: 376 ESSCLDKAVEVFEEMPYKNELSWMVMVSGYVHGGF-----AEDALKLFNKMRSENVKPCD 430

Query: 173 SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLE 232
            + +  +  C  L +L+ GKQ+H  + +       +A   LI+MY +CG +++A  +FL 
Sbjct: 431 YTYAGAIAACGELGALKHGKQLHGHIVQLGFEGSNSAGNALITMYARCGAVKEAHLMFLV 490

Query: 233 IQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 292
           +   D V+WNAMIS   QHG G +AL LFD+M  EG+ PD I+F+ +L ACNH+GLVD G
Sbjct: 491 MPNIDSVSWNAMISALGQHGHGREALELFDRMVAEGIYPDRISFLTVLTACNHSGLVDEG 550

Query: 293 IQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACR 352
            +YF+SM  D+GI    DHYT ++DLLGRAG++ EA DLIK MPF+P P+I+  +LS CR
Sbjct: 551 FRYFESMKRDFGIIPGEDHYTRLIDLLGRAGRIGEARDLIKTMPFEPTPSIWEAILSGCR 610

Query: 353 VHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPG 412
               ++L   AA  LF + P +  G Y+ L+N Y+A   W D AR+R  M++  V K PG
Sbjct: 611 TSGDMELGAHAADQLFKMTPQH-DGTYILLSNTYSAAGCWVDAARVRKLMRDRGVKKEPG 669

Query: 413 YSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQ 472
            SWIE G  VH F  GD  HPE   +++ L+ +  +M+  GYVPD +  LH +    KE 
Sbjct: 670 CSWIEAGNKVHVFLVGDTKHPEAHEVYKFLEMVGAKMRKLGYVPDTKVVLHDMEPHQKEH 729

Query: 473 LLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFH 532
           +L  HSE+LA+ FGL+ +P G  + V KNLR+C DCH A  ++S    REI+VRD  RFH
Sbjct: 730 ILFAHSERLAVGFGLLNLPPGATVTVLKNLRICDDCHAAIMFMSKAVGREIVVRDVRRFH 789

Query: 533 HFKDGTCSCGDYW 545
           HFKDG CSCG+YW
Sbjct: 790 HFKDGECSCGNYW 802



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 75/281 (26%), Positives = 134/281 (47%), Gaps = 14/281 (4%)

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAV 121
              +P KD  +W TM+ G+V++ ++  AR +F  +  K  V W+AMISGY+  G   +A 
Sbjct: 220 LDEMPNKDDLTWTTMVVGYVRRGDVGAARSVFEEVDGKFDVVWNAMISGYVHSGMAVEAF 279

Query: 122 ELFKVAPVKSV----VAWTAMISGYMKFGYVENSWAEDG--LKLLRMMIGLGIRPNASSL 175
           ELF+   ++ V      +T+++S     G   +  +  G  ++L    +     P  ++L
Sbjct: 280 ELFRRMVLERVPLDEFTFTSVLSACANVGLFAHGKSVHGQIIRLQPNFVPEAALPVNNAL 339

Query: 176 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR 235
            +    C +++       V + +F +   KD  +   ++S Y +   L+ A ++F E+  
Sbjct: 340 VTFYSKCGNIA-------VARRIFDNMTLKDVVSWNTILSGYVESSCLDKAVEVFEEMPY 392

Query: 236 KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQY 295
           K+ ++W  M+SGY   G  E AL+LF+KM+ E +KP   T+   + AC   G +  G Q 
Sbjct: 393 KNELSWMVMVSGYVHGGFAEDALKLFNKMRSENVKPCDYTYAGAIAACGELGALKHGKQL 452

Query: 296 FDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 336
              +V   G          ++ +  R G + EA  +   MP
Sbjct: 453 HGHIVQ-LGFEGSNSAGNALITMYARCGAVKEAHLMFLVMP 492



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 68/256 (26%), Positives = 108/256 (42%), Gaps = 46/256 (17%)

Query: 76  MISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPV--KSVV 133
           +I  +   +++  A  LF A P    VS +++++ Y    +L  AV  F   P   +  V
Sbjct: 65  LIHLYTLSRDLPAAATLFCADP--CPVSATSLVAAYAAADRLPAAVSFFDAVPPARRDTV 122

Query: 134 AWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLG-IRPNASSLSSVLLGCSHLSSLQLGK 192
              A+IS Y +      S A   + + R ++  G +RP+  S +++L    HL ++ +  
Sbjct: 123 LHNAVISAYAR-----ASHAAPAVAVFRSLLASGSLRPDDYSFTALLSAGGHLPNISVRH 177

Query: 193 --QVHQLVFKSPLCKDTTALTPLISMYCKC------------------------------ 220
             Q+H  V KS      +    L+++Y KC                              
Sbjct: 178 CAQLHCSVLKSGAGGALSVCNALVALYMKCESPEATRDARKVLDEMPNKDDLTWTTMVVG 237

Query: 221 ----GDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITF 276
               GD+  A  +F E+  K  V WNAMISGY   G   +A  LF +M  E +  D  TF
Sbjct: 238 YVRRGDVGAARSVFEEVDGKFDVVWNAMISGYVHSGMAVEAFELFRRMVLERVPLDEFTF 297

Query: 277 VALLLACNHAGLVDLG 292
            ++L AC + GL   G
Sbjct: 298 TSVLSACANVGLFAHG 313



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 64/274 (23%), Positives = 125/274 (45%), Gaps = 17/274 (6%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLN--SDDVVAA 58
           M +K  V+WN++L+G+  +   L  A E+F+++P  + +S+ +M+S  +    ++D +  
Sbjct: 359 MTLKDVVSWNTILSGYV-ESSCLDKAVEVFEEMPYKNELSWMVMVSGYVHGGFAEDALKL 417

Query: 59  FDFFQRLPIKDT-ASWNTMISGFVQKKNMAKARDLF-----LAMPEKNSVSWSAMISGYI 112
           F+  +   +K    ++   I+   +   +   + L      L     NS   +A+I+ Y 
Sbjct: 418 FNKMRSENVKPCDYTYAGAIAACGELGALKHGKQLHGHIVQLGFEGSNSAG-NALITMYA 476

Query: 113 ECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNA 172
            CG + +A  +F V P    V+W AMIS   + G+       + L+L   M+  GI P+ 
Sbjct: 477 RCGAVKEAHLMFLVMPNIDSVSWNAMISALGQHGH-----GREALELFDRMVAEGIYPDR 531

Query: 173 SSLSSVLLGCSHLSSLQLGKQVHQLVFKS-PLCKDTTALTPLISMYCKCGDLEDACKLFL 231
            S  +VL  C+H   +  G +  + + +   +       T LI +  + G + +A  L  
Sbjct: 532 ISFLTVLTACNHSGLVDEGFRYFESMKRDFGIIPGEDHYTRLIDLLGRAGRIGEARDLIK 591

Query: 232 EIQRKDVVT-WNAMISGYAQHGKGEKALRLFDKM 264
            +  +   + W A++SG    G  E      D++
Sbjct: 592 TMPFEPTPSIWEAILSGCRTSGDMELGAHAADQL 625


>gi|225435852|ref|XP_002265253.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 972

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 234/551 (42%), Positives = 333/551 (60%), Gaps = 20/551 (3%)

Query: 7   VNWNSVLAGFAKQRGKLKDAQELFDKIP----QPDVVSYNIMLSCILLNSDDVVAAFDFF 62
           V+WN++LAG+A  RG  ++A EL  ++     +PD++++N +++       D  AA +FF
Sbjct: 430 VSWNAMLAGYA-LRGSHEEAIELLSEMKFQGIEPDIITWNGLVTG-FTQYGDGKAALEFF 487

Query: 63  QRLPIKDTASWNTMISGFV----QKKNMAKARDL----FLAMPEKNSVSWSAMISGYIEC 114
           QR+         T ISG +    Q +N+   +++         E ++   SA+IS Y  C
Sbjct: 488 QRMHSMGMDPNTTTISGALAACGQVRNLKLGKEIHGYVLRNHIELSTGVGSALISMYSGC 547

Query: 115 GQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASS 174
             L+ A  +F     + VV W ++IS   + G   N+     L LLR M    +  N  +
Sbjct: 548 DSLEVACSVFSELSTRDVVVWNSIISACAQSGRSVNA-----LDLLREMNLSNVEVNTVT 602

Query: 175 LSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ 234
           + S L  CS L++L+ GK++HQ + +  L      L  LI MY +CG ++ + ++F  + 
Sbjct: 603 MVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMP 662

Query: 235 RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ 294
           ++D+V+WN MIS Y  HG G  A+ LF + +  G+KP+ ITF  LL AC+H+GL++ G +
Sbjct: 663 QRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTMGLKPNHITFTNLLSACSHSGLIEEGWK 722

Query: 295 YFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVH 354
           YF  M  +Y +    + Y CMVDLL RAG+  E ++ I+KMPF+P  A++G+LL ACR+H
Sbjct: 723 YFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETLEFIEKMPFEPNAAVWGSLLGACRIH 782

Query: 355 KRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYS 414
              DLAE+AA  LF L P  ++G YV +ANIY+A  +W+D A+IR  MKE  V K PG S
Sbjct: 783 CNPDLAEYAARYLFELEP-QSSGNYVLMANIYSAAGRWEDAAKIRCLMKERGVTKPPGCS 841

Query: 415 WIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLL 474
           WIEV   +H F  GD  HP +  I  K++ L   +K  GYVPD  F L  V E+ KE  L
Sbjct: 842 WIEVKRKLHSFVVGDTSHPLMEQISAKMESLYFDIKEIGYVPDTNFVLQDVDEDEKEFSL 901

Query: 475 LFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHF 534
             HSEK+A+AFGLI    GTP+R+ KNLRVCGDCH ATK+IS +EKR+II+RD  RFHHF
Sbjct: 902 CGHSEKIALAFGLISTTAGTPLRIIKNLRVCGDCHSATKFISKVEKRDIIMRDNYRFHHF 961

Query: 535 KDGTCSCGDYW 545
            DG CSCGDYW
Sbjct: 962 VDGVCSCGDYW 972



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 83/249 (33%), Positives = 142/249 (57%), Gaps = 15/249 (6%)

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKA----RDLFLAMPEKNSVSWSAMISGYIECGQ 116
           FF+ +  KD   WN M+SG+  K    KA     D+ L+  + + V+W+A+ISGY + GQ
Sbjct: 247 FFEEIEFKDVFMWNIMVSGYTSKGEFKKALKCISDMKLSGVKPDQVTWNAIISGYAQSGQ 306

Query: 117 LDKAVELF-KVAPVK----SVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPN 171
            ++A + F ++  +K    +VV+WTA+I+G  + GY       + L + R M+  G++PN
Sbjct: 307 FEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGY-----DFEALSVFRKMVLEGVKPN 361

Query: 172 ASSLSSVLLGCSHLSSLQLGKQVHQLVFK-SPLCKDTTALTPLISMYCKCGDLEDACKLF 230
           + +++S +  C++LS L+ G+++H    K   L  D      L+  Y KC  +E A + F
Sbjct: 362 SITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKF 421

Query: 231 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVD 290
             I++ D+V+WNAM++GYA  G  E+A+ L  +MK +G++PD IT+  L+      G   
Sbjct: 422 GMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDIITWNGLVTGFTQYGDGK 481

Query: 291 LGIQYFDSM 299
             +++F  M
Sbjct: 482 AALEFFQRM 490



 Score =  141 bits (355), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 103/427 (24%), Positives = 197/427 (46%), Gaps = 89/427 (20%)

Query: 7   VNWNSVLAGFAKQRGKLKDAQELFDKIP-----QPDVVSYNIMLSCILLNSDDVVAAFDF 61
           V WN++++G+A Q G+ ++A + F ++      +P+VVS+  +++    N  D   A   
Sbjct: 292 VTWNAIISGYA-QSGQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYD-FEALSV 349

Query: 62  FQRLPIK----------------------------------------DTASWNTMISGFV 81
           F+++ ++                                        D    N+++  + 
Sbjct: 350 FRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYA 409

Query: 82  QKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKS----VVAWTA 137
           + +++  AR  F  + + + VSW+AM++GY   G  ++A+EL      +     ++ W  
Sbjct: 410 KCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDIITWNG 469

Query: 138 MISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQL 197
           +++G+ ++G       +  L+  + M  +G+ PN +++S  L  C  + +L+LGK++H  
Sbjct: 470 LVTGFTQYGD-----GKAALEFFQRMHSMGMDPNTTTISGALAACGQVRNLKLGKEIHGY 524

Query: 198 VFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKA 257
           V ++ +   T   + LISMY  C  LE AC +F E+  +DVV WN++IS  AQ G+   A
Sbjct: 525 VLRNHIELSTGVGSALISMYSGCDSLEVACSVFSELSTRDVVVWNSIISACAQSGRSVNA 584

Query: 258 LRLFDKMKDEGMKPDSITFVALLLACN-----------HAGLVDLGIQ----YFDSMVND 302
           L L  +M    ++ +++T V+ L AC+           H  ++  G+       +S+++ 
Sbjct: 585 LDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDM 644

Query: 303 YGIAAK-----------PDH----YTCMVDLLGRAGKLVEAVDLIKK---MPFKPQPAIF 344
           YG               P      +  M+ + G  G  ++AV+L ++   M  KP    F
Sbjct: 645 YGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTMGLKPNHITF 704

Query: 345 GTLLSAC 351
             LLSAC
Sbjct: 705 TNLLSAC 711



 Score =  114 bits (286), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 72/254 (28%), Positives = 127/254 (50%), Gaps = 16/254 (6%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI 164
           S ++  Y + G ++ A  +F     ++V +WTA++  Y   G  E +     +KL  +M+
Sbjct: 128 SRLLEVYCQTGCVEDARRMFDKMSERNVFSWTAIMEMYCGLGDYEET-----IKLFYLMV 182

Query: 165 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 224
             G+RP+      V   CS L + ++GK V+  +       ++     ++ M+ KCG ++
Sbjct: 183 NEGVRPDHFVFPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMD 242

Query: 225 DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 284
            A + F EI+ KDV  WN M+SGY   G+ +KAL+    MK  G+KPD +T+ A++    
Sbjct: 243 IARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALKCISDMKLSGVKPDQVTWNAIISGYA 302

Query: 285 HAGLVDLGIQYFDSM--VNDYGIAAKPD--HYTCMVDLLGRAGKLVEAVDLIKKMPF--- 337
            +G  +   +YF  M  + D+    KP+   +T ++    + G   EA+ + +KM     
Sbjct: 303 QSGQFEEASKYFLEMGGLKDF----KPNVVSWTALIAGSEQNGYDFEALSVFRKMVLEGV 358

Query: 338 KPQPAIFGTLLSAC 351
           KP      + +SAC
Sbjct: 359 KPNSITIASAVSAC 372



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 88/165 (53%), Gaps = 5/165 (3%)

Query: 176 SSVLLGCSHLSSLQLGKQVH-QLVFKS-PLCKDTTALTPLISMYCKCGDLEDACKLFLEI 233
           +S+L  C  L +L+LG QVH QLV     +C+     + L+ +YC+ G +EDA ++F ++
Sbjct: 93  ASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLG--SRLLEVYCQTGCVEDARRMFDKM 150

Query: 234 QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGI 293
             ++V +W A++  Y   G  E+ ++LF  M +EG++PD   F  +  AC+      +G 
Sbjct: 151 SERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGK 210

Query: 294 QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 338
             +D M++  G          ++D+  + G++  A    +++ FK
Sbjct: 211 DVYDYMLS-IGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFK 254


>gi|328774753|gb|AEB39776.1| pentatricopeptide repeat protein 78 [Funaria hygrometrica]
          Length = 1020

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 225/543 (41%), Positives = 337/543 (62%), Gaps = 14/543 (2%)

Query: 10   NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNS--DDVVAAFDFFQRLPI 67
            N++++ +A+  G +KDA+ LF+K+ + D++S+  M+  +  +    + +A F   Q+  +
Sbjct: 485  NALISMYARC-GSIKDARLLFNKMVRKDIISWTAMIGGLAKSGLGAEALAVFQDMQQAGL 543

Query: 68   K-DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVS----WSAMISGYIECGQLDKAVE 122
            K +  ++ ++++       +   R +   + E    +     + +++ Y  CG +  A +
Sbjct: 544  KPNRVTYTSILNACSSPAALDWGRRIHQQVIEAGLATDAHVANTLVNMYSMCGSVKDARQ 603

Query: 123  LFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGC 182
            +F     + +VA+ AMI GY       ++  ++ LKL   +   G++P+  +  ++L  C
Sbjct: 604  VFDRMTQRDIVAYNAMIGGY-----AAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNAC 658

Query: 183  SHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWN 242
            ++  SL+  K++H LV K     DT+    L+S Y KCG   DA  +F ++ +++V++WN
Sbjct: 659  ANSGSLEWAKEIHSLVLKDGYLSDTSLGNALVSTYAKCGSFSDALLVFDKMMKRNVISWN 718

Query: 243  AMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVND 302
            A+I G AQHG+G+  L+LF++MK EG+KPD +TFV+LL AC+HAGL++ G +YF SM  D
Sbjct: 719  AIIGGCAQHGRGQDVLQLFERMKMEGIKPDIVTFVSLLSACSHAGLLEEGRRYFCSMSRD 778

Query: 303  YGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEF 362
            +GI    +HY CMVDLLGRAG+L E   LIK MPF+    I+G LL ACR+H  + +AE 
Sbjct: 779  FGITPTIEHYGCMVDLLGRAGQLDEVEALIKTMPFQANTRIWGALLGACRIHGNVPVAER 838

Query: 363  AAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVV 422
            AA +   L+P NAA  YV L+++YAA   WD  A++R  M++  V K PG SWIEVG  +
Sbjct: 839  AAESSLKLDPDNAA-VYVALSHMYAAAGMWDSAAKLRKLMEQRGVTKEPGRSWIEVGDKL 897

Query: 423  HEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLA 482
            H F + DR HPE   I+ +L +L   MK+ GYVPD    +H V E  KE  +  HSE+LA
Sbjct: 898  HYFVAEDRSHPESEKIYAELDKLTHAMKMEGYVPDTRSVMHDVDEGEKENAVCHHSERLA 957

Query: 483  IAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCG 542
            IA+GLI    GTPIR+FKNLRVC DCH ATK+I+ I  REI+ RD  RFHHFKDG CSCG
Sbjct: 958  IAYGLISTLPGTPIRIFKNLRVCPDCHTATKFITKIVDREIVARDVNRFHHFKDGVCSCG 1017

Query: 543  DYW 545
            DYW
Sbjct: 1018 DYW 1020



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 118/451 (26%), Positives = 205/451 (45%), Gaps = 87/451 (19%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQ----PDVVSYNIMLSCI-------- 48
           M  K+ V+W  ++ G+A   G  + A E+F K+ Q    P+ ++Y  +L+          
Sbjct: 305 METKSVVSWTIIIGGYADC-GHSEIAFEIFQKMQQEGVVPNRITYINVLNAFSGPAALKW 363

Query: 49  -------LLN----SDDVVAAF---------------DFFQRLPIKDTASWNTMISGFVQ 82
                  +LN    SD  V                    F++L  +D  +WNTMI G  +
Sbjct: 364 GKTVHSHILNAGHESDLAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAE 423

Query: 83  KKNMAKARDLFLA------MPEK-------------NSVSW------------------- 104
             N  +A +++        MP K              ++ W                   
Sbjct: 424 GGNWEEASEIYHQMQREGMMPNKITYVILLNACVNPTALHWGREIHSRVVKDGFMFDISV 483

Query: 105 -SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMM 163
            +A+IS Y  CG +  A  LF     K +++WTAMI G  K G        + L + + M
Sbjct: 484 QNALISMYARCGSIKDARLLFNKMVRKDIISWTAMIGGLAKSGL-----GAEALAVFQDM 538

Query: 164 IGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDL 223
              G++PN  + +S+L  CS  ++L  G+++HQ V ++ L  D      L++MY  CG +
Sbjct: 539 QQAGLKPNRVTYTSILNACSSPAALDWGRRIHQQVIEAGLATDAHVANTLVNMYSMCGSV 598

Query: 224 EDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC 283
           +DA ++F  + ++D+V +NAMI GYA H  G++AL+LFD++++EG+KPD +T++ +L AC
Sbjct: 599 KDARQVFDRMTQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNAC 658

Query: 284 NHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAI 343
            ++G ++   +    ++ D G  +       +V    + G   +A+ +  KM  K     
Sbjct: 659 ANSGSLEWAKEIHSLVLKD-GYLSDTSLGNALVSTYAKCGSFSDALLVFDKM-MKRNVIS 716

Query: 344 FGTLLSACRVHKRLD--LAEFAAMNLFNLNP 372
           +  ++  C  H R    L  F  M +  + P
Sbjct: 717 WNAIIGGCAQHGRGQDVLQLFERMKMEGIKP 747



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 87/334 (26%), Positives = 169/334 (50%), Gaps = 16/334 (4%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP--- 66
           N +L  +AK  G + +A+E+FDK+    VVS+ I++     +      AF+ FQ++    
Sbjct: 283 NCILNMYAKC-GSIHEAREVFDKMETKSVVSWTIIIGG-YADCGHSEIAFEIFQKMQQEG 340

Query: 67  -IKDTASWNTMISGFVQKKNMAKAR----DLFLAMPEKNSVSWSAMISGYIECGQLDKAV 121
            + +  ++  +++ F     +   +     +  A  E +    +A++  Y +CG      
Sbjct: 341 VVPNRITYINVLNAFSGPAALKWGKTVHSHILNAGHESDLAVGTALVKMYAKCGSYKDCR 400

Query: 122 ELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLG 181
           ++F+    + ++AW  MI G  + G    +W E+  ++   M   G+ PN  +   +L  
Sbjct: 401 QVFEKLVNRDLIAWNTMIGGLAEGG----NW-EEASEIYHQMQREGMMPNKITYVILLNA 455

Query: 182 CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTW 241
           C + ++L  G+++H  V K     D +    LISMY +CG ++DA  LF ++ RKD+++W
Sbjct: 456 CVNPTALHWGREIHSRVVKDGFMFDISVQNALISMYARCGSIKDARLLFNKMVRKDIISW 515

Query: 242 NAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN 301
            AMI G A+ G G +AL +F  M+  G+KP+ +T+ ++L AC+    +D G +    ++ 
Sbjct: 516 TAMIGGLAKSGLGAEALAVFQDMQQAGLKPNRVTYTSILNACSSPAALDWGRRIHQQVI- 574

Query: 302 DYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335
           + G+A        +V++    G + +A  +  +M
Sbjct: 575 EAGLATDAHVANTLVNMYSMCGSVKDARQVFDRM 608



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 101/409 (24%), Positives = 169/409 (41%), Gaps = 77/409 (18%)

Query: 72  SWNTMISGFVQKKNMAKARDLFLAMPE--------------KNSVSWSAMISG------- 110
           SWN M+ G+VQ   + +A  L   M +               +  S SA+  G       
Sbjct: 211 SWNAMVVGYVQYGYIEEALKLLREMQQHGLALGRATTMRLLSSCKSPSALECGREIHVEA 270

Query: 111 ------------------YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSW 152
                             Y +CG + +A E+F     KSVV+WT +I GY   G+     
Sbjct: 271 MKARLLFDVNVANCILNMYAKCGSIHEAREVFDKMETKSVVSWTIIIGGYADCGH----- 325

Query: 153 AEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTP 212
           +E   ++ + M   G+ PN  +  +VL   S  ++L+ GK VH  +  +    D    T 
Sbjct: 326 SEIAFEIFQKMQQEGVVPNRITYINVLNAFSGPAALKWGKTVHSHILNAGHESDLAVGTA 385

Query: 213 LISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPD 272
           L+ MY KCG  +D  ++F ++  +D++ WN MI G A+ G  E+A  ++ +M+ EGM P+
Sbjct: 386 LVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGNWEEASEIYHQMQREGMMPN 445

Query: 273 SITFVALLLACNHAGLVDLGIQYFDSMVND----------------------------YG 304
            IT+V LL AC +   +  G +    +V D                            + 
Sbjct: 446 KITYVILLNACVNPTALHWGREIHSRVVKDGFMFDISVQNALISMYARCGSIKDARLLFN 505

Query: 305 IAAKPD--HYTCMVDLLGRAGKLVEAVDLIKKMP---FKPQPAIFGTLLSACRVHKRLDL 359
              + D   +T M+  L ++G   EA+ + + M     KP    + ++L+AC     LD 
Sbjct: 506 KMVRKDIISWTAMIGGLAKSGLGAEALAVFQDMQQAGLKPNRVTYTSILNACSSPAALDW 565

Query: 360 AEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVV 408
                  +     A  A     L N+Y+      D  ++   M + ++V
Sbjct: 566 GRRIHQQVIEAGLATDAHVANTLVNMYSMCGSVKDARQVFDRMTQRDIV 614



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 87/342 (25%), Positives = 165/342 (48%), Gaps = 58/342 (16%)

Query: 58  AFDFFQRLPIK----DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSV----SWSAMIS 109
           A D  Q L  +    ++  +  M+   ++ K++   R++   + +  +V    + +A+I+
Sbjct: 125 AMDVVQYLQQQGARVNSCDYMKMLKRCIEVKDLVAGREVHEHIIQHCTVLDQYTVNALIN 184

Query: 110 GYIECGQLDKAVELFKV--APVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLG 167
            YI+CG +++A +++       ++V +W AM+ GY+++GY+E     + LKLLR M   G
Sbjct: 185 MYIQCGSIEEARQVWNKLNHTERTVHSWNAMVVGYVQYGYIE-----EALKLLREMQQHG 239

Query: 168 IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC 227
           +    ++   +L  C   S+L+ G+++H    K+ L  D      +++MY KCG + +A 
Sbjct: 240 LALGRATTMRLLSSCKSPSALECGREIHVEAMKARLLFDVNVANCILNMYAKCGSIHEAR 299

Query: 228 KLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN--- 284
           ++F +++ K VV+W  +I GYA  G  E A  +F KM+ EG+ P+ IT++ +L A +   
Sbjct: 300 EVFDKMETKSVVSWTIIIGGYADCGHSEIAFEIFQKMQQEGVVPNRITYINVLNAFSGPA 359

Query: 285 --------HAGLVDLG------------------------IQYFDSMVNDYGIAAKPDHY 312
                   H+ +++ G                         Q F+ +VN   IA     +
Sbjct: 360 ALKWGKTVHSHILNAGHESDLAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIA-----W 414

Query: 313 TCMVDLLGRAGKLVEAVDLIKKMPFK---PQPAIFGTLLSAC 351
             M+  L   G   EA ++  +M  +   P    +  LL+AC
Sbjct: 415 NTMIGGLAEGGNWEEASEIYHQMQREGMMPNKITYVILLNAC 456


>gi|225425015|ref|XP_002267613.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930 [Vitis vinifera]
 gi|297738214|emb|CBI27415.3| unnamed protein product [Vitis vinifera]
          Length = 743

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 237/574 (41%), Positives = 340/574 (59%), Gaps = 46/574 (8%)

Query: 11  SVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDT 70
           S L     + G + DA+  FD++P+ +VV  N M++  L+    +  +   F  L  +D+
Sbjct: 177 SPLVDMYTKLGLIYDAKRYFDEMPERNVVMCNTMITG-LMRCGMIEESQRLFCGLKERDS 235

Query: 71  ASWNTMISGFVQKKNMAKARDLF-------------------------LAMPE------- 98
            SW  MI+G +Q     +A D+F                         LA+ E       
Sbjct: 236 ISWTIMITGLMQNGLEREALDMFREMRLAGFAMDQFTFGSVLTACGSLLALGEGKQIHAY 295

Query: 99  -------KNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENS 151
                   N    SA++  Y +C  +  A  +FK  P K+V++WTAM+      GY +N 
Sbjct: 296 VIRTDHKDNVFVGSALVDMYSKCRSIKSAETVFKRMPQKNVISWTAML-----VGYGQNG 350

Query: 152 WAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALT 211
           ++E+ +K+   M   G+ P+  +L SV+  C++L+SL+ G Q H     S L    T   
Sbjct: 351 FSEEAVKIFFEMQRNGVEPDDFTLGSVISSCANLASLEEGAQFHCRALVSGLISFITVSN 410

Query: 212 PLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKP 271
            LI++Y KCG  E++ +LF E+  +D V+W A+++GYAQ GK  + + LF++M   G+KP
Sbjct: 411 ALITLYGKCGSTENSHRLFTEMNIRDEVSWTALLAGYAQFGKANETIGLFERMLAHGLKP 470

Query: 272 DSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDL 331
           D +TF+ +L AC+ AGLV+ G+QYF+SM+ ++GI    DH TC++DLLGRAG+L EA + 
Sbjct: 471 DGVTFIGVLSACSRAGLVEKGLQYFESMIKEHGIMPIVDHCTCIIDLLGRAGRLEEARNF 530

Query: 332 IKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKK 391
           I  MP  P    + TLLS+CRVH  +++ ++AA +L  L P N A  YV L+++YA+  K
Sbjct: 531 INNMPCHPDVVGWATLLSSCRVHGDMEIGKWAADSLIALEPQNPAS-YVLLSSLYASKGK 589

Query: 392 WDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKL 451
           WD VA++R  M++  V K PGYSWI+    VH F + D+  P L  I+ +L++L  +M  
Sbjct: 590 WDKVAQLRRGMRDKRVRKEPGYSWIKYKGKVHVFSADDQSSPFLGQIYAELEKLNYKMIE 649

Query: 452 AGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRA 511
            GYVPD+   LH V E  K ++L  HSEKLAIAFGLI VP G PIRV KNLRVCGDCH A
Sbjct: 650 EGYVPDMSSVLHDVEESEKIKMLNHHSEKLAIAFGLIFVPPGLPIRVIKNLRVCGDCHNA 709

Query: 512 TKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           TK+IS I +REI+VRD  RFH FKDGTCSCGD+W
Sbjct: 710 TKFISKITQREILVRDAVRFHLFKDGTCSCGDFW 743



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 103/441 (23%), Positives = 184/441 (41%), Gaps = 101/441 (22%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
           N+++  + K  G L  A  +FD IPQP++ S+N +LS +      +      F  +P +D
Sbjct: 44  NNLITAYYK-LGNLAYAHHVFDHIPQPNLFSWNTILS-VYSKLGLLSQMQQIFNLMPFRD 101

Query: 70  TASWNTMISGFVQKKNMAKARDLFLAMPEK-----NSVSWSAM---------------IS 109
             SWN  ISG+    + + A  ++  M +      N +++S M               I+
Sbjct: 102 GVSWNLAISGYANYGSCSDAVRVYKLMLKDAAMNLNRITFSTMLILCSKFRCVDLGRQIN 161

Query: 110 G--------------------YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVE 149
           G                    Y + G +  A   F   P ++VV    MI+G M+ G +E
Sbjct: 162 GQILKFGFGSDVFVGSPLVDMYTKLGLIYDAKRYFDEMPERNVVMCNTMITGLMRCGMIE 221

Query: 150 N--------------SWA------------EDGLKLLRMMIGLGIRPNASSLSSVLLGCS 183
                          SW              + L + R M   G   +  +  SVL  C 
Sbjct: 222 ESQRLFCGLKERDSISWTIMITGLMQNGLEREALDMFREMRLAGFAMDQFTFGSVLTACG 281

Query: 184 HLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNA 243
            L +L  GKQ+H  V ++    +    + L+ MY KC  ++ A  +F  + +K+V++W A
Sbjct: 282 SLLALGEGKQIHAYVIRTDHKDNVFVGSALVDMYSKCRSIKSAETVFKRMPQKNVISWTA 341

Query: 244 MISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYF------- 296
           M+ GY Q+G  E+A+++F +M+  G++PD  T  +++ +C +   ++ G Q+        
Sbjct: 342 MLVGYGQNGFSEEAVKIFFEMQRNGVEPDDFTLGSVISSCANLASLEEGAQFHCRALVSG 401

Query: 297 --------DSMVNDYGIAAKPDH---------------YTCMVDLLGRAGKLVEAVDLIK 333
                   ++++  YG     ++               +T ++    + GK  E + L +
Sbjct: 402 LISFITVSNALITLYGKCGSTENSHRLFTEMNIRDEVSWTALLAGYAQFGKANETIGLFE 461

Query: 334 KM---PFKPQPAIFGTLLSAC 351
           +M     KP    F  +LSAC
Sbjct: 462 RMLAHGLKPDGVTFIGVLSAC 482



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 47/193 (24%), Positives = 83/193 (43%), Gaps = 33/193 (17%)

Query: 176 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR 235
           +S+L  C    +    K++H L+ K+    +T     LI+ Y K G+L  A  +F  I +
Sbjct: 9   ASLLKLCCESQNQTQAKKLHCLILKTIKQPETFLSNNLITAYYKLGNLAYAHHVFDHIPQ 68

Query: 236 KDVVTWNAMI-------------------------------SGYAQHGKGEKALRLFDKM 264
            ++ +WN ++                               SGYA +G    A+R++  M
Sbjct: 69  PNLFSWNTILSVYSKLGLLSQMQQIFNLMPFRDGVSWNLAISGYANYGSCSDAVRVYKLM 128

Query: 265 -KDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAG 323
            KD  M  + ITF  +L+ C+    VDLG Q  +  +  +G  +     + +VD+  + G
Sbjct: 129 LKDAAMNLNRITFSTMLILCSKFRCVDLGRQ-INGQILKFGFGSDVFVGSPLVDMYTKLG 187

Query: 324 KLVEAVDLIKKMP 336
            + +A     +MP
Sbjct: 188 LIYDAKRYFDEMP 200


>gi|168045266|ref|XP_001775099.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673550|gb|EDQ60071.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 804

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 227/533 (42%), Positives = 323/533 (60%), Gaps = 15/533 (2%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRL----PIKDTASWNTM 76
           G  KDA+E+F+ +   DV+++N M+    ++S  +  A   F R+       D A++ T+
Sbjct: 279 GAFKDAREVFECLSYRDVIAWNTMIRG-FVDSGQLEEAHGTFHRMLEEGVAPDRATYTTV 337

Query: 77  ISGFVQKKNMAKARDLFLAMPEKNSVS----WSAMISGYIECGQLDKAVELFKVAPVKSV 132
           +S   +   +A+ +++     +   VS     +A+I+ Y + G +  A ++F   P + V
Sbjct: 338 LSACARPGGLARGKEIHARAAKDGLVSDVRFGNALINMYSKAGSMKDARQVFDRMPKRDV 397

Query: 133 VAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGK 192
           V+WT ++  Y     V  S+        + M+  G++ N  +   VL  CS+  +L+ GK
Sbjct: 398 VSWTTLLGRYADCDQVVESFT-----TFKQMLQQGVKANKITYMCVLKACSNPVALKWGK 452

Query: 193 QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHG 252
           ++H  V K+ L  D      L+SMY KCG +EDA ++F  +  +DVVTWN +I G  Q+G
Sbjct: 453 EIHAEVVKAGLLADLAVTNALMSMYFKCGSVEDAIRVFEGMSMRDVVTWNTLIGGLGQNG 512

Query: 253 KGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY 312
           +G +AL+ ++ MK EGM+P++ TFV +L AC    LV+ G + F  M  DYGI     HY
Sbjct: 513 RGLEALQRYEVMKSEGMRPNAATFVNVLSACRVCNLVEEGRRQFAFMSKDYGIVPTEKHY 572

Query: 313 TCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNP 372
            CMVD+L RAG L EA D+I  +P KP  A++G LL+ACR+H  +++ E AA +   L P
Sbjct: 573 ACMVDILARAGHLREAEDVILTIPLKPSAAMWGALLAACRIHCNVEIGERAAEHCLKLEP 632

Query: 373 ANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVH 432
            NA G YV L+ IYAA   W DVA++R  MKE  V K PG SWIE+   VH F + D+ H
Sbjct: 633 QNA-GLYVSLSAIYAAAGMWRDVAKLRKFMKERGVKKEPGRSWIEIAGEVHSFVARDQSH 691

Query: 433 PELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPL 492
           P    I+ +L+ L+K+MK  GYVPD  F +H + +E KE+ +  HSEKLAIA+GLI  P 
Sbjct: 692 PRTQEIYAELETLKKQMKSLGYVPDTRFVMHDLDDEGKERAVCHHSEKLAIAYGLISTPP 751

Query: 493 GTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           GTPIR+ KNLRVC DCH ATK+IS I KREII RD  RFHHFK+G CSCGDYW
Sbjct: 752 GTPIRISKNLRVCTDCHTATKFISKITKREIIARDAHRFHHFKNGECSCGDYW 804



 Score =  148 bits (374), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 92/342 (26%), Positives = 165/342 (48%), Gaps = 13/342 (3%)

Query: 2   NVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLN--SDDVVAAF 59
            VK  V   + L       G + +A++LFDK     VVS+N+M+S       + +    F
Sbjct: 58  GVKPNVYITNTLLKLYAHCGSVNEARQLFDKFSNKSVVSWNVMISGYAHRGLAQEAFNLF 117

Query: 60  DFFQRLPIK-DTASWNTMISGFVQKKNMAKARDLFLAMPE----KNSVSWSAMISGYIEC 114
              Q+  ++ D  ++ +++S       +   R++ + + E     ++   +A+IS Y +C
Sbjct: 118 TLMQQERLEPDKFTFVSILSACSSPAVLNWGREIHVRVMEAGLANDTTVGNALISMYAKC 177

Query: 115 GQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASS 174
           G +  A  +F     +  V+WT +   Y + GY      E+ LK    M+   +RP+  +
Sbjct: 178 GSVRDARRVFDAMASRDEVSWTTLTGAYAESGY-----GEESLKTYHAMLQERVRPSRIT 232

Query: 175 LSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ 234
             +VL  C  L++L+ GKQ+H  + +S    D    T L  MY KCG  +DA ++F  + 
Sbjct: 233 YMNVLSACGSLAALEKGKQIHAHIVESEYHSDVRVSTALTKMYMKCGAFKDAREVFECLS 292

Query: 235 RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ 294
            +DV+ WN MI G+   G+ E+A   F +M +EG+ PD  T+  +L AC   G +  G +
Sbjct: 293 YRDVIAWNTMIRGFVDSGQLEEAHGTFHRMLEEGVAPDRATYTTVLSACARPGGLARGKE 352

Query: 295 YFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 336
                  D G+ +       ++++  +AG + +A  +  +MP
Sbjct: 353 IHARAAKD-GLVSDVRFGNALINMYSKAGSMKDARQVFDRMP 393



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 84/163 (51%), Gaps = 1/163 (0%)

Query: 178 VLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKD 237
           +L  C     L +GKQVH+ + +  +  +      L+ +Y  CG + +A +LF +   K 
Sbjct: 34  LLQSCVKAKDLAVGKQVHEHILRCGVKPNVYITNTLLKLYAHCGSVNEARQLFDKFSNKS 93

Query: 238 VVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFD 297
           VV+WN MISGYA  G  ++A  LF  M+ E ++PD  TFV++L AC+   +++ G +   
Sbjct: 94  VVSWNVMISGYAHRGLAQEAFNLFTLMQQERLEPDKFTFVSILSACSSPAVLNWGRE-IH 152

Query: 298 SMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQ 340
             V + G+A        ++ +  + G + +A  +   M  + +
Sbjct: 153 VRVMEAGLANDTTVGNALISMYAKCGSVRDARRVFDAMASRDE 195



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 64/279 (22%), Positives = 122/279 (43%), Gaps = 45/279 (16%)

Query: 5   TTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQR 64
           + V + + L     + G +KDA+++FD++P+ DVVS+  +L     + D VV +F  F++
Sbjct: 364 SDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTTLLG-RYADCDQVVESFTTFKQ 422

Query: 65  LPIKDTAS-------------------WNTMISGFVQKKNMAKARDLFLAMPEKNSVSWS 105
           +  +   +                   W   I   V K  +    DL +          +
Sbjct: 423 MLQQGVKANKITYMCVLKACSNPVALKWGKEIHAEVVKAGLLA--DLAVT---------N 471

Query: 106 AMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIG 165
           A++S Y +CG ++ A+ +F+   ++ VV W  +I G       +N    + L+   +M  
Sbjct: 472 ALMSMYFKCGSVEDAIRVFEGMSMRDVVTWNTLIGGLG-----QNGRGLEALQRYEVMKS 526

Query: 166 LGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSP---LCKDTTALTPLISMYCKCGD 222
            G+RPNA++  +VL  C   + ++ G++  Q  F S    +         ++ +  + G 
Sbjct: 527 EGMRPNAATFVNVLSACRVCNLVEEGRR--QFAFMSKDYGIVPTEKHYACMVDILARAGH 584

Query: 223 LEDACKLFLEIQRK-DVVTWNAMISGYAQHGK---GEKA 257
           L +A  + L I  K     W A+++    H     GE+A
Sbjct: 585 LREAEDVILTIPLKPSAAMWGALLAACRIHCNVEIGERA 623


>gi|147805537|emb|CAN74095.1| hypothetical protein VITISV_023708 [Vitis vinifera]
          Length = 906

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 252/629 (40%), Positives = 350/629 (55%), Gaps = 93/629 (14%)

Query: 3   VKTTVNW-----NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYN-IMLSCIL------- 49
           +K   +W     N+++  +AK  G L DA  +F+KI QPD+VS+N ++  C+L       
Sbjct: 285 IKLGYDWDPFSANALVDMYAKV-GDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQA 343

Query: 50  -------------------LNSD--------DVVAAFDF-------FQRLPIKDTASWNT 75
                              + SD        D+ +  D        F  LP KD  +WN 
Sbjct: 344 LELLGQMKRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNA 403

Query: 76  MISGFVQKKNMAKARDLFLAMPEK----NSVSWS-------------------------- 105
           +ISG+ Q     +A  LF+ M ++    N  + S                          
Sbjct: 404 IISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSG 463

Query: 106 ---------AMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDG 156
                    ++I  Y +C  ++ A  +F+   +  +V++T+MI+ Y ++G       E+ 
Sbjct: 464 FHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQ-----GEEA 518

Query: 157 LKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISM 216
           LKL   M  + ++P+    SS+L  C++LS+ + GKQ+H  + K     D  A   L++M
Sbjct: 519 LKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQLHVHILKYGFVLDIFAGNSLVNM 578

Query: 217 YCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITF 276
           Y KCG ++DA + F E+  + +V+W+AMI G AQHG G +AL+LF++M  EG+ P+ IT 
Sbjct: 579 YAKCGSIDDAGRAFSELTERGIVSWSAMIGGLAQHGHGRQALQLFNQMLKEGVSPNHITL 638

Query: 277 VALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 336
           V++L ACNHAGLV     YF+SM   +G     +HY CM+DLLGRAGK+ EAV+L+ KMP
Sbjct: 639 VSVLGACNHAGLVTEAKLYFESMEELFGFKPMQEHYACMIDLLGRAGKINEAVELVNKMP 698

Query: 337 FKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVA 396
           F+   +++G LL A R+HK ++L   AA  LF L P   +G +V LANIYA+  KW++VA
Sbjct: 699 FEANASVWGALLGAARIHKDVELGRRAAEMLFILEP-EKSGTHVLLANIYASAGKWENVA 757

Query: 397 RIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVP 456
            +R  M+++ V K PG SWIEV   V+ F  GDR H     I+ KL EL   M  AGYVP
Sbjct: 758 EVRRLMRDSKVKKEPGMSWIEVKDKVYTFLVGDRSHYRSQEIYAKLDELSDLMDKAGYVP 817

Query: 457 DLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYIS 516
            +E  LH V +  KE LL  HSEKLA+AFGLI  P G PIRV KNLRVC DCH A KYI 
Sbjct: 818 MVEIDLHDVEQSEKELLLYHHSEKLAVAFGLIATPQGAPIRVKKNLRVCVDCHTAFKYIC 877

Query: 517 AIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
            I  REIIVRD  RFHHFKDG+CSCGDYW
Sbjct: 878 KIVSREIIVRDINRFHHFKDGSCSCGDYW 906



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 102/402 (25%), Positives = 175/402 (43%), Gaps = 92/402 (22%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK- 68
           N+++  +AK   +  D++ LFD+IP+ +VVS+N + SC  +  D    A   F  + +  
Sbjct: 196 NTLVVMYAKC-DEFLDSKRLFDEIPERNVVSWNALFSC-YVQXDFCGEAVGLFYEMVLSG 253

Query: 69  --------------------------------------DTASWNTMISGFVQKKNMAKAR 90
                                                 D  S N ++  + +  ++A A 
Sbjct: 254 IKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAI 313

Query: 91  DLFLAMPEKNSVSWSAMISG---------------------------------------- 110
            +F  + + + VSW+A+I+G                                        
Sbjct: 314 SVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKRQLHSSLMKMDMESDLFVSVGL 373

Query: 111 ---YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAE-DGLKLLRMMIGL 166
              Y +C  L+ A   F + P K ++AW A+ISGY ++      W + + L L   M   
Sbjct: 374 VDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQY------WEDMEALSLFVEMHKE 427

Query: 167 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 226
           GI  N ++LS++L   + L  + + +QVH L  KS    D   +  LI  Y KC  +EDA
Sbjct: 428 GIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDA 487

Query: 227 CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHA 286
            ++F E    D+V++ +MI+ YAQ+G+GE+AL+LF +M+D  +KPD     +LL AC + 
Sbjct: 488 ERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACANL 547

Query: 287 GLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEA 328
              + G Q    ++  YG          +V++  + G + +A
Sbjct: 548 SAFEQGKQLHVHILK-YGFVLDIFAGNSLVNMYAKCGSIDDA 588



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 75/265 (28%), Positives = 127/265 (47%), Gaps = 29/265 (10%)

Query: 107 MISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGL 166
           +I+ Y +C     A +L   +    +V+W+A+ISGY      +N      L     M  L
Sbjct: 97  LINLYSKCRXFGYARKLVDESSEPDLVSWSALISGY-----AQNGLGGGALMAFHEMHLL 151

Query: 167 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 226
           G++ N  + SSVL  CS +  L++GKQVH +V  S    D      L+ MY KC +  D+
Sbjct: 152 GVKCNEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDS 211

Query: 227 CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN-- 284
            +LF EI  ++VV+WNA+ S Y Q     +A+ LF +M   G+KP+  +  +++ AC   
Sbjct: 212 KRLFDEIPERNVVSWNALFSCYVQXDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGL 271

Query: 285 ---------HAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335
                    H  L+ LG  +             P     +VD+  + G L +A+ + +K+
Sbjct: 272 RDSSRGKIIHGYLIKLGYDW------------DPFSANALVDMYAKVGDLADAISVFEKI 319

Query: 336 PFKPQPAIFGTLLSACRVHKRLDLA 360
             +P    +  +++ C +H+  + A
Sbjct: 320 K-QPDIVSWNAVIAGCVLHEHHEQA 343



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 77/279 (27%), Positives = 140/279 (50%), Gaps = 25/279 (8%)

Query: 26  AQELFDKIPQPDVVSYNIMLSCILLNS--DDVVAAFDFFQRLPIK-DTASWNTMISGFVQ 82
           A++L D+  +PD+VS++ ++S    N      + AF     L +K +  ++++++     
Sbjct: 110 ARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSI 169

Query: 83  KKNMAKARDL----FLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAM 138
            K++   + +     ++  E +    + ++  Y +C +   +  LF   P ++VV+W A+
Sbjct: 170 VKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNAL 229

Query: 139 ISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLV 198
            S Y     V+  +  + + L   M+  GI+PN  SLSS++  C+ L     GK +H  +
Sbjct: 230 FSCY-----VQXDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYL 284

Query: 199 FKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKAL 258
            K     D  +   L+ MY K GDL DA  +F +I++ D+V+WNA+I+G   H   E+AL
Sbjct: 285 IKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQAL 344

Query: 259 RLFDKMKDE------GMKPDSITFVALLLACNHAGLVDL 291
            L  +MK +       M  +S  FV++       GLVD+
Sbjct: 345 ELLGQMKRQLHSSLMKMDMESDLFVSV-------GLVDM 376



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/115 (40%), Positives = 65/115 (56%)

Query: 170 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 229
           P + S S +L  C    SL+ G Q+H  + KS L  D +    LI++Y KC     A KL
Sbjct: 54  PTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRXFGYARKL 113

Query: 230 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 284
             E    D+V+W+A+ISGYAQ+G G  AL  F +M   G+K +  TF ++L AC+
Sbjct: 114 VDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACS 168


>gi|359475368|ref|XP_003631669.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 891

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 234/546 (42%), Positives = 341/546 (62%), Gaps = 19/546 (3%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK- 68
           N+++  +AK  G L+DA++ F ++   DVVS+N +++    N DD V A  FF ++ +  
Sbjct: 355 NALINMYAK-FGNLEDARKAFQQMFITDVVSWNSIIAAYEQN-DDPVTAHGFFVKMQLNG 412

Query: 69  ---DTASWNTMISGFVQKKNMAKARDLFLAMPEK-----NSVSWSAMISGYIECGQLDKA 120
              D  +  ++ S   Q ++   +R +   +  +     + V  +A++  Y + G LD A
Sbjct: 413 FQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSA 472

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLG-IRPNASSLSSVL 179
            ++F++ PVK V++W  +I+GY      +N  A + +++ +MM     I PN  +  S+L
Sbjct: 473 HKVFEIIPVKDVISWNTLITGY-----AQNGLASEAIEVYKMMEECKEIIPNQGTWVSIL 527

Query: 180 LGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVV 239
              +H+ +LQ G ++H  V K+ L  D    T LI +Y KCG L DA  LF ++ ++  V
Sbjct: 528 PAYAHVGALQQGMKIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSV 587

Query: 240 TWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSM 299
           TWNA+IS +  HG  EK L+LF +M DEG+KPD +TFV+LL AC+H+G V+ G   F  +
Sbjct: 588 TWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCF-RL 646

Query: 300 VNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDL 359
           + +YGI     HY CMVDLLGRAG L  A D IK MP +P  +I+G LL ACR+H  ++L
Sbjct: 647 MQEYGIKPSLKHYGCMVDLLGRAGYLEMAYDFIKDMPLQPDASIWGALLGACRIHGNIEL 706

Query: 360 AEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVG 419
            +FA+  LF ++  N  G YV L+NIYA + KW+ V ++R   +E  + K PG+S IEV 
Sbjct: 707 GKFASDRLFEVDSKNV-GYYVLLSNIYANVGKWEGVDKVRSLARERGLKKTPGWSTIEVN 765

Query: 420 TVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSE 479
             V  F +G++ HP+   I+E+L+ L  +MK  GY+PD  F L  V E+ KE +L  HSE
Sbjct: 766 RKVDVFYTGNQSHPKCKEIYEELRVLTAKMKSLGYIPDYSFVLQDVEEDEKEHILTSHSE 825

Query: 480 KLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTC 539
           +LAIAFG+I  P  +PIR+FKNLRVCGDCH ATK+IS I +REI+VRD+ RFHHFKDG C
Sbjct: 826 RLAIAFGIISTPPKSPIRIFKNLRVCGDCHNATKFISRITQREIVVRDSNRFHHFKDGIC 885

Query: 540 SCGDYW 545
           SCGDYW
Sbjct: 886 SCGDYW 891



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 80/264 (30%), Positives = 123/264 (46%), Gaps = 10/264 (3%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDT-ASWNTMISG 79
           G +  ++  FD+IPQ DV ++N M+S  + N     A   F+Q L + +    + T    
Sbjct: 165 GDVSLSRCTFDQIPQKDVYAWNSMISAYVHNGHFHEAIGCFYQLLLVSEIRPDFYTFPPV 224

Query: 80  FVQKKNMAKARDL----FLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAW 135
                 +   R +    F    + N    +++I  Y   G    A  LF   P + + +W
Sbjct: 225 LKACGTLVDGRKIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSW 284

Query: 136 TAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVH 195
            AMISG      ++N  A   L +L  M   GI+ N  ++ S+L  C  L  +     +H
Sbjct: 285 NAMISGL-----IQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLGDISTAMLIH 339

Query: 196 QLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGE 255
             V K  L  D      LI+MY K G+LEDA K F ++   DVV+WN++I+ Y Q+    
Sbjct: 340 LYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQNDDPV 399

Query: 256 KALRLFDKMKDEGMKPDSITFVAL 279
            A   F KM+  G +PD +T V+L
Sbjct: 400 TAHGFFVKMQLNGFQPDLLTLVSL 423



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 89/362 (24%), Positives = 169/362 (46%), Gaps = 51/362 (14%)

Query: 4   KTTVNWNSVLAG----FAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSD------ 53
           K    WN  +A        + G    A+ LFD +P  D+ S+N M+S ++ N +      
Sbjct: 243 KLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALD 302

Query: 54  ------------DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNS 101
                       + V         P     S   +I  +V K  +    DLF++      
Sbjct: 303 VLDEMRLEGIKMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGL--EFDLFVS------ 354

Query: 102 VSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLR 161
              +A+I+ Y + G L+ A + F+   +  VV+W ++I+ Y +    ++     G   ++
Sbjct: 355 ---NALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQ---NDDPVTAHGF-FVK 407

Query: 162 MMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSP-LCKDTTALTPLISMYCKC 220
           M +  G +P+  +L S+    +     +  + VH  + +   L +D      ++ MY K 
Sbjct: 408 MQLN-GFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKL 466

Query: 221 GDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKD-EGMKPDSITFVAL 279
           G L+ A K+F  I  KDV++WN +I+GYAQ+G   +A+ ++  M++ + + P+  T+V++
Sbjct: 467 GLLDSAHKVFEIIPVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSI 526

Query: 280 LLACNHAGLVDLGIQYFDSMVN-----DYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKK 334
           L A  H G +  G++    ++      D  +A      TC++D+ G+ G+LV+A+ L  +
Sbjct: 527 LPAYAHVGALQQGMKIHGRVIKTNLHLDVFVA------TCLIDVYGKCGRLVDAMSLFYQ 580

Query: 335 MP 336
           +P
Sbjct: 581 VP 582



 Score = 85.1 bits (209), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 90/183 (49%), Gaps = 7/183 (3%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI 164
           + +++ Y   G +  +   F   P K V AW +MIS Y+  G+   +         ++++
Sbjct: 155 TRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYVHNGHFHEAIG----CFYQLLL 210

Query: 165 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 224
              IRP+  +   VL  C  L     G+++H   FK     +      LI MY + G   
Sbjct: 211 VSEIRPDFYTFPPVLKACGTLVD---GRKIHCWAFKLGFQWNVFVAASLIHMYSRFGFTG 267

Query: 225 DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 284
            A  LF ++  +D+ +WNAMISG  Q+G   +AL + D+M+ EG+K + +T V++L  C 
Sbjct: 268 IARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCP 327

Query: 285 HAG 287
             G
Sbjct: 328 QLG 330



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 82/342 (23%), Positives = 137/342 (40%), Gaps = 68/342 (19%)

Query: 169 RPNASSLSSVLLGCSHLSSLQLGKQVHQLVF--------KSPLCKDTTAL---------- 210
           R     L S        SS  LG Q  ++ F        K+P  K   AL          
Sbjct: 92  RRRPIQLFSAARSSPQFSSYGLGNQNEEIDFNFLFDSSTKTPFAKCLHALLVVAGKVQSI 151

Query: 211 ---TPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDK-MKD 266
              T L+++Y   GD+  +   F +I +KDV  WN+MIS Y  +G   +A+  F + +  
Sbjct: 152 FISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYVHNGHFHEAIGCFYQLLLV 211

Query: 267 EGMKPDSITFVALLLACN--------HAGLVDLGIQY----FDSMVNDY------GIAAK 308
             ++PD  TF  +L AC         H     LG Q+      S+++ Y      GIA  
Sbjct: 212 SEIRPDFYTFPPVLKACGTLVDGRKIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARS 271

Query: 309 ---------PDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRL-D 358
                       +  M+  L + G   +A+D++ +M  +     F T++S   V  +L D
Sbjct: 272 LFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLGD 331

Query: 359 LAEFAAMNLFNLNPANAAGCYVQ--LANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWI 416
           ++    ++L+ +        +V   L N+YA     +D  +    M   +VV     SW 
Sbjct: 332 ISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFITDVV-----SW- 385

Query: 417 EVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDL 458
              +++  +   D    + V+ H        +M+L G+ PDL
Sbjct: 386 --NSIIAAYEQND----DPVTAHGFF----VKMQLNGFQPDL 417


>gi|356570253|ref|XP_003553304.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Glycine max]
          Length = 815

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 218/555 (39%), Positives = 340/555 (61%), Gaps = 18/555 (3%)

Query: 3   VKTTVNWNSVLAG----FAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAA 58
           VK    WN  +A     F  +  ++ +A++LF ++P+ D +SYN++++C   N   V  +
Sbjct: 267 VKCNFVWNVFVANALLDFYSKHDRIVEARKLFYEMPEVDGISYNVLITCCAWNGR-VEES 325

Query: 59  FDFFQRLPI----KDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVS----WSAMISG 110
            + F+ L      +    + T++S      N+   R +       +++S     ++++  
Sbjct: 326 LELFRELQFTRFDRRQFPFATLLSIAANSLNLEMGRQIHSQAIVTDAISEVLVGNSLVDM 385

Query: 111 YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRP 170
           Y +C +  +A  +F     +S V WTA+ISGY     V+    EDGLKL   M    I  
Sbjct: 386 YAKCDKFGEANRIFADLAHQSSVPWTALISGY-----VQKGLHEDGLKLFVEMHRAKIGA 440

Query: 171 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 230
           ++++ +S+L  C++L+SL LGKQ+H  + +S    +  + + L+ MY KCG +++A ++F
Sbjct: 441 DSATYASILRACANLASLTLGKQLHSRIIRSGCLSNVFSGSALVDMYAKCGSIKEALQMF 500

Query: 231 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVD 290
            E+  ++ V+WNA+IS YAQ+G G  ALR F++M   G++P+S++F+++L AC+H GLV+
Sbjct: 501 QEMPVRNSVSWNALISAYAQNGDGGHALRSFEQMIHSGLQPNSVSFLSILCACSHCGLVE 560

Query: 291 LGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSA 350
            G+QYF+SM   Y +  + +HY  MVD+L R+G+  EA  L+ +MPF+P   ++ ++L++
Sbjct: 561 EGLQYFNSMTQVYKLEPRREHYASMVDMLCRSGRFDEAEKLMARMPFEPDEIMWSSILNS 620

Query: 351 CRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKM 410
           CR+HK  +LA  AA  LFN+     A  YV ++NIYAA  +WD V +++ +++E  + K+
Sbjct: 621 CRIHKNQELAIKAADQLFNMKGLRDAAPYVSMSNIYAAAGEWDSVGKVKKALRERGIRKV 680

Query: 411 PGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVK 470
           P YSW+E+    H F + D  HP+   I  KL ELEK+M+  GY PD   ALH V EEVK
Sbjct: 681 PAYSWVEIKQKTHVFSANDTSHPQTKEITRKLDELEKQMEEQGYKPDSTCALHNVDEEVK 740

Query: 471 EQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTR 530
            + L +HSE++AIAF LI  P G+PI V KNLR C DCH A K IS I  REI VRD++R
Sbjct: 741 VESLKYHSERIAIAFALISTPKGSPILVMKNLRACNDCHAAIKVISKIVNREITVRDSSR 800

Query: 531 FHHFKDGTCSCGDYW 545
           FHHF DG+CSC DYW
Sbjct: 801 FHHFTDGSCSCKDYW 815



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 92/295 (31%), Positives = 141/295 (47%), Gaps = 11/295 (3%)

Query: 69  DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAP 128
           +T  +N  +   +Q+ ++  AR LF  MP KN +S + MI GY++ G L  A  LF    
Sbjct: 41  NTCRFNFQVQTHLQRGDLGAARKLFDEMPHKNVISTNTMIMGYLKSGNLSTARSLFDSMV 100

Query: 129 VKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSL 188
            +SVV WT +I GY +     N + E    L   M   G+ P+  +L+++L G +   S+
Sbjct: 101 QRSVVTWTMLIGGYAQ----HNRFLE-AFNLFADMCRHGMVPDHITLATLLSGFTEFESV 155

Query: 189 QLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGY 248
               QVH  V K            L+  YCK   L  AC LF  +  KD VT+NA+++GY
Sbjct: 156 NEVAQVHGHVVKVGYDSTLMVCNSLLDSYCKTRSLGLACHLFKHMAEKDNVTFNALLTGY 215

Query: 249 AQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK 308
           ++ G    A+ LF KM+D G +P   TF A+L A      ++ G Q   S V        
Sbjct: 216 SKEGFNHDAINLFFKMQDLGFRPSEFTFAAVLTAGIQMDDIEFG-QQVHSFVVKCNFVWN 274

Query: 309 PDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSAC----RVHKRLDL 359
                 ++D   +  ++VEA  L  +MP +     +  L++ C    RV + L+L
Sbjct: 275 VFVANALLDFYSKHDRIVEARKLFYEMP-EVDGISYNVLITCCAWNGRVEESLEL 328



 Score =  104 bits (260), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 76/315 (24%), Positives = 138/315 (43%), Gaps = 45/315 (14%)

Query: 19  QRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMIS 78
           QRG L  A++LFD++P  +V+S N M+    L S ++  A   F  +  +   +W  +I 
Sbjct: 54  QRGDLGAARKLFDEMPHKNVISTNTMIMG-YLKSGNLSTARSLFDSMVQRSVVTWTMLIG 112

Query: 79  GFVQKKNMAKARDLFLAMPEK----NSVSWSAMISGYIECGQLDK--------------- 119
           G+ Q     +A +LF  M       + ++ + ++SG+ E   +++               
Sbjct: 113 GYAQHNRFLEAFNLFADMCRHGMVPDHITLATLLSGFTEFESVNEVAQVHGHVVKVGYDS 172

Query: 120 --------------------AVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKL 159
                               A  LFK    K  V + A+++GY K G+       D + L
Sbjct: 173 TLMVCNSLLDSYCKTRSLGLACHLFKHMAEKDNVTFNALLTGYSKEGF-----NHDAINL 227

Query: 160 LRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCK 219
              M  LG RP+  + ++VL     +  ++ G+QVH  V K     +      L+  Y K
Sbjct: 228 FFKMQDLGFRPSEFTFAAVLTAGIQMDDIEFGQQVHSFVVKCNFVWNVFVANALLDFYSK 287

Query: 220 CGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVAL 279
              + +A KLF E+   D +++N +I+  A +G+ E++L LF +++          F  L
Sbjct: 288 HDRIVEARKLFYEMPEVDGISYNVLITCCAWNGRVEESLELFRELQFTRFDRRQFPFATL 347

Query: 280 LLACNHAGLVDLGIQ 294
           L    ++  +++G Q
Sbjct: 348 LSIAANSLNLEMGRQ 362


>gi|357508407|ref|XP_003624492.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499507|gb|AES80710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1125

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 219/555 (39%), Positives = 340/555 (61%), Gaps = 18/555 (3%)

Query: 3   VKTTVNWNSVLAG----FAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAA 58
           VK    WN  +A     F  +  ++ +A +LF ++P+ D +SYN++++C   N   V  +
Sbjct: 326 VKCNFVWNVFVANALLDFYSKHDRVVEASKLFYEMPEVDGISYNVLVTCYAWNGR-VKES 384

Query: 59  FDFFQRLPI----KDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVS----WSAMISG 110
            + F+ L      +    + T++S      N+   R +       +++S     ++++  
Sbjct: 385 LELFKELQFTGFDRRNFPFATLLSIAAISLNLDIGRQIHSQTIVTDAISEILVGNSLVDM 444

Query: 111 YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRP 170
           Y +CG+  +A  +F    ++S V WTAMIS Y     V+    EDGLKL   M    I  
Sbjct: 445 YAKCGEFGEANRIFSDLAIQSSVPWTAMISSY-----VQKGLHEDGLKLFVEMQRAKIGA 499

Query: 171 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 230
           +A++ +S++  C+ L+SL LGKQ+H  +  S    +  + + L+ MY KCG ++DA ++F
Sbjct: 500 DAATYASIVRACASLASLTLGKQLHSHIIGSGYISNVFSGSALVDMYAKCGSIKDALQMF 559

Query: 231 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVD 290
            E+  ++ V+WNA+IS YAQ+G G+  LRLF++M   G++PDS++ +++L AC+H GLV+
Sbjct: 560 QEMPVRNSVSWNALISAYAQNGDGDCTLRLFEEMVRSGLQPDSVSLLSILCACSHCGLVE 619

Query: 291 LGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSA 350
            G+QYFDSM   Y +  K +HY   +D+L R G+  EA  L+ +MPF+P   ++ ++L++
Sbjct: 620 EGLQYFDSMTRIYKLVPKKEHYASTIDMLCRGGRFDEAEKLMAQMPFEPDEIMWSSVLNS 679

Query: 351 CRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKM 410
           C +HK  +LA+ AA  LFN+     A  YV ++NIYAA  +WD+V +++ +M+E  V K+
Sbjct: 680 CGIHKNQELAKKAANQLFNMKVLRDAAPYVTMSNIYAAAGEWDNVGKVKKAMRERGVKKV 739

Query: 411 PGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVK 470
           P YSW+E+    H F + D+ HP++  I +KL ELE++M   GY PD   ALH V EEVK
Sbjct: 740 PAYSWVEIKHKTHVFTANDKTHPQMREIMKKLDELEEKMVKKGYKPDSSCALHNVDEEVK 799

Query: 471 EQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTR 530
            + L +HSE++AIAF LI  P G+PI V KNLR C DCH A K IS I +REI VRD++R
Sbjct: 800 VESLKYHSERIAIAFALISTPEGSPILVMKNLRACTDCHAAIKVISKIVRREITVRDSSR 859

Query: 531 FHHFKDGTCSCGDYW 545
           FHHF+DG C+C DYW
Sbjct: 860 FHHFRDGFCTCRDYW 874



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 88/276 (31%), Positives = 139/276 (50%), Gaps = 22/276 (7%)

Query: 69  DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAP 128
           +T   N ++  F+Q+ ++  AR LF  MP KN  S + MI GYI+ G L +A  LF    
Sbjct: 100 NTYRSNFLVKSFLQRGDLNGARKLFDEMPHKNIFSTNTMIMGYIKSGNLSEARTLFDSMF 159

Query: 129 VKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSL 188
            ++ V WT +I GY      +N+   +   L   M   GI P+  SL+++L G +   S+
Sbjct: 160 QRTAVTWTMLIGGY-----AQNNQFREAFGLFIEMGRHGIDPDHVSLATLLSGFTEFDSV 214

Query: 189 QLGKQVHQLVFKSPLCKDTTAL--TPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMIS 246
              +QVH  V K  L  D+T +    L+  YCK   L  A +LF +I  +D VT+NA+++
Sbjct: 215 NEVRQVHSHVIK--LGYDSTLVVSNSLLDSYCKTRSLGLAFQLFNDIPERDSVTFNALLT 272

Query: 247 GYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIA 306
           GY++ G   +A+ LF KM++ G +P   TF A+L A      ++ G Q        +G  
Sbjct: 273 GYSKEGFNREAINLFFKMQEVGYRPTEFTFAAILTAGIQLDDIEFGQQV-------HGFV 325

Query: 307 AKPDHY------TCMVDLLGRAGKLVEAVDLIKKMP 336
            K +          ++D   +  ++VEA  L  +MP
Sbjct: 326 VKCNFVWNVFVANALLDFYSKHDRVVEASKLFYEMP 361



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 85/369 (23%), Positives = 161/369 (43%), Gaps = 50/369 (13%)

Query: 3   VKTTVNWNSVLAGFAK----QRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAA 58
           +KT  N N+  + F      QRG L  A++LFD++P  ++ S N M+    + S ++  A
Sbjct: 93  IKTGFNPNTYRSNFLVKSFLQRGDLNGARKLFDEMPHKNIFSTNTMIMG-YIKSGNLSEA 151

Query: 59  FDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMISGYIEC 114
              F  +  +   +W  +I G+ Q     +A  LF+ M     + + VS + ++SG+ E 
Sbjct: 152 RTLFDSMFQRTAVTWTMLIGGYAQNNQFREAFGLFIEMGRHGIDPDHVSLATLLSGFTEF 211

Query: 115 GQLDK-----------------------------------AVELFKVAPVKSVVAWTAMI 139
             +++                                   A +LF   P +  V + A++
Sbjct: 212 DSVNEVRQVHSHVIKLGYDSTLVVSNSLLDSYCKTRSLGLAFQLFNDIPERDSVTFNALL 271

Query: 140 SGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVF 199
           +GY K G+       + + L   M  +G RP   + +++L     L  ++ G+QVH  V 
Sbjct: 272 TGYSKEGF-----NREAINLFFKMQEVGYRPTEFTFAAILTAGIQLDDIEFGQQVHGFVV 326

Query: 200 KSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALR 259
           K     +      L+  Y K   + +A KLF E+   D +++N +++ YA +G+ +++L 
Sbjct: 327 KCNFVWNVFVANALLDFYSKHDRVVEASKLFYEMPEVDGISYNVLVTCYAWNGRVKESLE 386

Query: 260 LFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLL 319
           LF +++  G    +  F  LL     +  +D+G Q     +    I+      + +VD+ 
Sbjct: 387 LFKELQFTGFDRRNFPFATLLSIAAISLNLDIGRQIHSQTIVTDAISEILVGNS-LVDMY 445

Query: 320 GRAGKLVEA 328
            + G+  EA
Sbjct: 446 AKCGEFGEA 454


>gi|357113684|ref|XP_003558631.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 802

 Score =  437 bits (1123), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 227/554 (40%), Positives = 339/554 (61%), Gaps = 20/554 (3%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQ-----PDVVSYNIMLSCI----LLNSDD 54
           +T V+WN+V+AG+  Q G    A   F ++       PD  +   +LS      +++   
Sbjct: 257 RTIVSWNAVIAGY-NQNGLNAKALWFFSRMLSYSTMAPDEFTITSVLSACANLGMVSIGK 315

Query: 55  VVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLF--LAMPEKNSVSWSAMISGYI 112
            V A+    R+P     + N +IS + +  ++  AR +     M + N +S++A++ GY+
Sbjct: 316 QVHAYILRSRMPYIGQVT-NALISMYAKSGSVENARGVMQQAVMADLNVISFTALLEGYV 374

Query: 113 ECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNA 172
           + G +  A E+F V   + VVAWTAMI GY + G+      ++ ++L R+MI  G  PN+
Sbjct: 375 KLGDMKHAREMFDVMSNRDVVAWTAMIVGYEQNGH-----NDEAMELFRLMIRSGPEPNS 429

Query: 173 SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLE 232
            ++++VL  C+ L+ L+ GKQ+H    +S   + ++    +++MY + G L  A ++F  
Sbjct: 430 YTVAAVLSVCASLACLEYGKQIHCKAIRSLQEQSSSVSNSIVTMYARSGSLPWARRVFDR 489

Query: 233 IQ-RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDL 291
           +  RK+ VTW +MI   AQHG GE A+ LF++M   G+KPD ITFV +L AC H G VD 
Sbjct: 490 VHWRKETVTWTSMIVALAQHGLGEDAVGLFEEMLRVGVKPDRITFVGVLSACTHVGFVDE 549

Query: 292 GIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSAC 351
           G +YF  + + +GI  +  HY CMVDLL RAG   EA + I++MP +P    +G+LLSAC
Sbjct: 550 GKRYFQQLQDKHGIVPEMSHYACMVDLLARAGLFSEAQEFIQQMPVEPDAIAWGSLLSAC 609

Query: 352 RVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMP 411
           RVHK  DLAE AA  L +++P N+ G Y  L+N+Y+A  +W+D A+I    K+ +V K  
Sbjct: 610 RVHKNADLAELAAEKLLSIDPGNS-GAYSALSNVYSACGRWNDAAKIWKRRKDKSVKKET 668

Query: 412 GYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKE 471
           G+SW  +G  VH F + D +HP+  +++    ++   +K AG+VPDL+  LH V +E+KE
Sbjct: 669 GFSWTHIGNRVHVFGADDVLHPQRDTVYRTAAKMWDDIKKAGFVPDLQSVLHDVDDELKE 728

Query: 472 QLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRF 531
           ++L  HSEKLAIAFGL+  P  T +R+ KNLRVC DCH A K+IS +  REII+RD TRF
Sbjct: 729 EMLSRHSEKLAIAFGLVSTPEKTTLRIMKNLRVCNDCHTAIKFISKVADREIILRDATRF 788

Query: 532 HHFKDGTCSCGDYW 545
           HHFKDG CSC DYW
Sbjct: 789 HHFKDGFCSCKDYW 802



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 102/423 (24%), Positives = 186/423 (43%), Gaps = 79/423 (18%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIML------------------ 45
           +    WNS+L+ +AK  G+L DA+ +F ++P+ D VS+ +M+                  
Sbjct: 94  RNVFTWNSLLSLYAKS-GRLADARAVFAEMPERDPVSWTVMVVGLNRVGRFGEAIKMFLD 152

Query: 46  ------------------SCILLNSDDV-VAAFDFFQRLPIKDTAS-WNTMISGFVQKKN 85
                             SC    +  V      F  +L +       N++++ + +  +
Sbjct: 153 MVTDGLSPTQFTLTNVLSSCAATEARGVGRKVHSFVVKLGLSSCVPVANSVLNMYGKCGD 212

Query: 86  MAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKF 145
              AR +F  MPE++  SW+AM+S     G++D A+ LF+  P +++V+W A+I+GY + 
Sbjct: 213 AETARAVFERMPERSVSSWNAMVSLDAHLGRMDLALSLFENMPDRTIVSWNAVIAGYNQN 272

Query: 146 GYVENS-WAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLC 204
           G    + W        RM+    + P+  +++SVL  C++L  + +GKQVH  + +S + 
Sbjct: 273 GLNAKALWF-----FSRMLSYSTMAPDEFTITSVLSACANLGMVSIGKQVHAYILRSRMP 327

Query: 205 KDTTALTPLISMYCKC---------------------------------GDLEDACKLFL 231
                   LISMY K                                  GD++ A ++F 
Sbjct: 328 YIGQVTNALISMYAKSGSVENARGVMQQAVMADLNVISFTALLEGYVKLGDMKHAREMFD 387

Query: 232 EIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDL 291
            +  +DVV W AMI GY Q+G  ++A+ LF  M   G +P+S T  A+L  C     ++ 
Sbjct: 388 VMSNRDVVAWTAMIVGYEQNGHNDEAMELFRLMIRSGPEPNSYTVAAVLSVCASLACLEY 447

Query: 292 GIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSAC 351
           G Q     +      +     + +V +  R+G L  A  +  ++ ++ +   + +++ A 
Sbjct: 448 GKQIHCKAIRSLQEQSSSVSNS-IVTMYARSGSLPWARRVFDRVHWRKETVTWTSMIVAL 506

Query: 352 RVH 354
             H
Sbjct: 507 AQH 509



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 77/262 (29%), Positives = 131/262 (50%), Gaps = 20/262 (7%)

Query: 88  KARDLFLAMP--EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKF 145
           +AR LF  +P  ++N  +W++++S Y + G+L  A  +F   P +  V+WT M+ G  + 
Sbjct: 81  EARRLFDEIPAAQRNVFTWNSLLSLYAKSGRLADARAVFAEMPERDPVSWTVMVVGLNRV 140

Query: 146 GYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCK 205
           G        + +K+   M+  G+ P   +L++VL  C+   +  +G++VH  V K  L  
Sbjct: 141 GRFG-----EAIKMFLDMVTDGLSPTQFTLTNVLSSCAATEARGVGRKVHSFVVKLGLSS 195

Query: 206 DTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMK 265
                  +++MY KCGD E A  +F  +  + V +WNAM+S  A  G+ + AL LF+ M 
Sbjct: 196 CVPVANSVLNMYGKCGDAETARAVFERMPERSVSSWNAMVSLDAHLGRMDLALSLFENMP 255

Query: 266 DEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRA--- 322
           D  +    +++ A++   N  GL    + +F  M++   +A  PD +T    L   A   
Sbjct: 256 DRTI----VSWNAVIAGYNQNGLNAKALWFFSRMLSYSTMA--PDEFTITSVLSACANLG 309

Query: 323 ----GKLVEAVDLIKKMPFKPQ 340
               GK V A  L  +MP+  Q
Sbjct: 310 MVSIGKQVHAYILRSRMPYIGQ 331


>gi|449485624|ref|XP_004157227.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g57430, chloroplastic-like [Cucumis sativus]
          Length = 863

 Score =  437 bits (1123), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 233/534 (43%), Positives = 322/534 (60%), Gaps = 17/534 (3%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G L+DA+ +FD +P  DV+ +N ++S    N    + A   F  +  K+   +N      
Sbjct: 338 GLLQDARMVFDLMPXKDVIVWNSIISG-YSNCGYDIEAMSLFTNM-YKEGLEFNQTTLST 395

Query: 81  VQKKNMAKARDLFLAMPEKNSVSWSAMISGYI---------ECGQLDKAVELFKVAPVKS 131
           + K       + F       S+       GY+         +C  L+ A ++F+V P + 
Sbjct: 396 ILKSTAGSQANGFCEQVHTISIKSGYQYDGYVANSLLDSYGKCCLLEDAAKVFEVCPAED 455

Query: 132 VVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLG 191
           +VA+T+MI+ Y ++G       E+ LK+   M    I+P+A   SS+   C++LS+ + G
Sbjct: 456 LVAYTSMITAYSQYGL-----GEEALKMYLRMQDRDIKPDAFIFSSLFNACANLSAYEQG 510

Query: 192 KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQH 251
           KQ+H  V K  L  D  A   L++MY KCG ++DA  +F EI  + +V+W+AMI G AQH
Sbjct: 511 KQIHVHVLKCGLLSDVFAGNSLVNMYAKCGSIDDASCIFNEISWRGIVSWSAMIGGLAQH 570

Query: 252 GKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDH 311
           G G KAL+LF +M   G+ P+ IT V++L ACNHAGLV    ++F  M   +GI    +H
Sbjct: 571 GHGRKALQLFYQMLKNGILPNHITLVSVLSACNHAGLVTEARRFFGLMEKLFGITPTQEH 630

Query: 312 YTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLN 371
           Y CMVD+LGR G+L EA+ L+K+MPF+   A++G LL A R+HK ++L   AA  L  L 
Sbjct: 631 YACMVDILGRVGRLDEAMVLVKEMPFQASAAVWGALLGAARIHKNIELGRHAAEMLLTLE 690

Query: 372 PANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRV 431
           P  + G ++ LANIYA+   WD+VA++R SMK + V K PG SWIE+   V+ F  GDR 
Sbjct: 691 PEKS-GTHILLANIYASTGMWDNVAKVRRSMKNSLVKKEPGMSWIELKDKVYTFIVGDRS 749

Query: 432 HPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVP 491
           HP    I+ KL +L +R+  AGYVP +E  LH V +  KEQLL  HSEKLA+AFGLI  P
Sbjct: 750 HPRSKEIYVKLDDLRERLTSAGYVPMIETDLHDVEQIEKEQLLWHHSEKLAVAFGLIATP 809

Query: 492 LGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
            G PIRV KNLRVC DCH A K+IS +  REIIVRD  RFHHF+DG+CSCGDYW
Sbjct: 810 PGAPIRVKKNLRVCIDCHTAFKFISKVASREIIVRDINRFHHFRDGSCSCGDYW 863



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 81/256 (31%), Positives = 130/256 (50%), Gaps = 9/256 (3%)

Query: 89  ARDLFLAMPEKNSVSWSAMISGYIECGQLDKAV----ELFKVAPVKSVVAWTAMISGYMK 144
           AR L +   E + VSWSA+ISGY++ G+ ++A+    E++ +    +   +++++ G   
Sbjct: 101 ARKLVIDSSEPDLVSWSALISGYVQNGRGEEALLTYYEMYLLGAKGNEFTFSSVLKGCSL 160

Query: 145 FGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLC 204
              +E       + L+  MI  GI PN  SLS+VL  C+ L     G +VH  + K    
Sbjct: 161 TRNLELGKQIHRVALVTEMISTGISPNEFSLSTVLNACAGLEDENYGMKVHGYLIKLGYD 220

Query: 205 KDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKM 264
            D  +   L+ MY K G  E A  +F EI + D+V+WNA+I+G   H K + AL+L  KM
Sbjct: 221 SDPFSANALLDMYAKSGCPEAAIAVFYEIPKPDIVSWNAVIAGCVLHEKNDLALKLLGKM 280

Query: 265 KDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY--TCMVDLLGRA 322
               + P   T  + L AC   GLV LG Q   +++    +  +PD +    ++D+  + 
Sbjct: 281 GSYRVAPSMFTLSSALKACAAIGLVKLGRQLHSALMK---MDMEPDSFVGVGLIDMYSKC 337

Query: 323 GKLVEAVDLIKKMPFK 338
           G L +A  +   MP K
Sbjct: 338 GLLQDARMVFDLMPXK 353



 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 85/287 (29%), Positives = 140/287 (48%), Gaps = 38/287 (13%)

Query: 98  EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGL 157
           + +  S +A++  Y + G  + A+ +F   P   +V+W A+I+G +   + +N  A   L
Sbjct: 220 DSDPFSANALLDMYAKSGCPEAAIAVFYEIPKPDIVSWNAVIAGCVL--HEKNDLA---L 274

Query: 158 KLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMY 217
           KLL  M    + P+  +LSS L  C+ +  ++LG+Q+H  + K  +  D+     LI MY
Sbjct: 275 KLLGKMGSYRVAPSMFTLSSALKACAAIGLVKLGRQLHSALMKMDMEPDSFVGVGLIDMY 334

Query: 218 CKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFV 277
            KCG L+DA  +F  +  KDV+ WN++ISGY+  G   +A+ LF  M  EG++ +  T  
Sbjct: 335 SKCGLLQDARMVFDLMPXKDVIVWNSIISGYSNCGYDIEAMSLFTNMYKEGLEFNQTTLS 394

Query: 278 ALLLA---------CNHAGLVDL--GIQY----FDSMVNDYGI------AAK-----PDH 311
            +L +         C     + +  G QY     +S+++ YG       AAK     P  
Sbjct: 395 TILKSTAGSQANGFCEQVHTISIKSGYQYDGYVANSLLDSYGKCCLLEDAAKVFEVCPAE 454

Query: 312 ----YTCMVDLLGRAGKLVEAVDLIKKMP---FKPQPAIFGTLLSAC 351
               YT M+    + G   EA+ +  +M     KP   IF +L +AC
Sbjct: 455 DLVAYTSMITAYSQYGLGEEALKMYLRMQDRDIKPDAFIFSSLFNAC 501


>gi|125545880|gb|EAY92019.1| hypothetical protein OsI_13712 [Oryza sativa Indica Group]
          Length = 804

 Score =  436 bits (1122), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 230/557 (41%), Positives = 342/557 (61%), Gaps = 20/557 (3%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQ-----PDVVSYNIMLS-CILLNSDD 54
           M  ++ V+WN+++AG+  Q G    A +LF ++       PD  +   +LS C  L +  
Sbjct: 256 MPGRSIVSWNAMIAGY-NQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVR 314

Query: 55  V---VAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK--NSVSWSAMIS 109
           +   V A+     +      + N +IS + +  ++  AR +     E   N +S++A++ 
Sbjct: 315 IGKQVHAYILRTEMAYNSQVT-NALISTYAKSGSVENARRIMDQSMETDLNVISFTALLE 373

Query: 110 GYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIR 169
           GY++ G ++ A E+F V   + VVAWTAMI      GY +N   ++ + L R MI  G  
Sbjct: 374 GYVKIGDMESAREMFGVMNNRDVVAWTAMI-----VGYEQNGRNDEAIDLFRSMITCGPE 428

Query: 170 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 229
           PN+ +L++VL  C+ L+ L  GKQ+H    +S L + ++    +I+MY + G    A ++
Sbjct: 429 PNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLERSSSVSNAIITMYARSGSFPWARRM 488

Query: 230 FLEI-QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGL 288
           F ++  RK+ +TW +MI   AQHG+GE+A+ LF++M   G++PD IT+V +L AC+HAG 
Sbjct: 489 FDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGF 548

Query: 289 VDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLL 348
           V+ G +Y+D + N++ IA +  HY CMVDLL RAG   EA + I++MP +P    +G+LL
Sbjct: 549 VNEGKRYYDQIKNEHQIAPEMSHYACMVDLLARAGLFSEAQEFIRRMPVEPDAIAWGSLL 608

Query: 349 SACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVV 408
           SACRVHK  +LAE AA  L +++P N+ G Y  +AN+Y+A  +W D ARI  + KE  V 
Sbjct: 609 SACRVHKNAELAELAAEKLLSIDPNNS-GAYSAIANVYSACGRWSDAARIWKARKEKAVR 667

Query: 409 KMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEE 468
           K  G+SW  + + +H F + D VHP+  +++     + + +K AG+VPDL+  LH V +E
Sbjct: 668 KETGFSWTHIRSKIHVFGADDVVHPQRDAVYAMAARMWEEIKGAGFVPDLQSVLHDVDDE 727

Query: 469 VKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDT 528
           +KE+LL  HSEKLAIAFGLI  P  T +RV KNLRVC DCH A K IS +  REIIVRD 
Sbjct: 728 LKEELLSRHSEKLAIAFGLISTPEKTTLRVMKNLRVCNDCHAAIKAISKVTDREIIVRDA 787

Query: 529 TRFHHFKDGTCSCGDYW 545
           TRFHHF+DG CSC DYW
Sbjct: 788 TRFHHFRDGLCSCKDYW 804



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 98/368 (26%), Positives = 166/368 (45%), Gaps = 88/368 (23%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIML------------------ 45
           +    WNS+L+ FAK  G+L DA+ +F ++P+ D VS+ +M+                  
Sbjct: 96  RNVFTWNSLLSMFAKS-GRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLD 154

Query: 46  ------------------SCILLNSDDV-------VAAFDFFQRLPIKDTASWNTMISGF 80
                             SC +  +  V       V        +P+      N++++ +
Sbjct: 155 MTADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVA-----NSVLNMY 209

Query: 81  VQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMIS 140
            +  +   A  +F  MP ++  SW+AM+S     G++D A  LF+  P +S+V+W AMI+
Sbjct: 210 GKCGDAETASTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPGRSIVSWNAMIA 269

Query: 141 GYMKFGYVENSWAEDGLKLL-RMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVF 199
           GY      +N      LKL  RM+    + P+  +++SVL  C++L ++++GKQVH  + 
Sbjct: 270 GYN-----QNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYIL 324

Query: 200 KSPLCKDTTALTPLISMYCKC---------------------------------GDLEDA 226
           ++ +  ++     LIS Y K                                  GD+E A
Sbjct: 325 RTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESA 384

Query: 227 CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHA 286
            ++F  +  +DVV W AMI GY Q+G+ ++A+ LF  M   G +P+S T  A+L  C   
Sbjct: 385 REMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASL 444

Query: 287 GLVDLGIQ 294
             +D G Q
Sbjct: 445 ACLDYGKQ 452



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 81/306 (26%), Positives = 124/306 (40%), Gaps = 98/306 (32%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G L+DA+ LFD+IP                              L  ++  +WN+++S F
Sbjct: 79  GGLRDARRLFDEIP------------------------------LARRNVFTWNSLLSMF 108

Query: 81  VQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMIS 140
            +   +A AR +F  MPE+++VSW+ M+ G    G+  +A+                   
Sbjct: 109 AKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAI------------------- 149

Query: 141 GYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK 200
                            K L  M   G  P   +L++VL  C+   +  +G++VH  V K
Sbjct: 150 -----------------KTLLDMTADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVK 192

Query: 201 SPLCKDTTALTPLISMYCKCGDLEDAC-------------------------------KL 229
             L         +++MY KCGD E A                                 L
Sbjct: 193 LGLGSCVPVANSVLNMYGKCGDAETASTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESL 252

Query: 230 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE-GMKPDSITFVALLLACNHAGL 288
           F  +  + +V+WNAMI+GY Q+G   KAL+LF +M  E  M PD  T  ++L AC + G 
Sbjct: 253 FESMPGRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGN 312

Query: 289 VDLGIQ 294
           V +G Q
Sbjct: 313 VRIGKQ 318


>gi|449502858|ref|XP_004161763.1| PREDICTED: uncharacterized LOC101222622 [Cucumis sativus]
          Length = 2355

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 217/481 (45%), Positives = 305/481 (63%), Gaps = 7/481 (1%)

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
            F  + ++D  SWNT+ISG+     + KAR +F  M EKN VSWS MISGY   G L++A
Sbjct: 184 LFDEMVVRDVVSWNTLISGYCFSGMVDKARMVFDGMMEKNLVSWSTMISGYARVGNLEEA 243

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLG-IRPNASSLSSVL 179
            +LF+  P+++VV+W AMI+GY      +N    D ++L R M   G + PN  +L SVL
Sbjct: 244 RQLFENMPMRNVVSWNAMIAGY-----AQNEKYADAIELFRQMQHEGGLAPNDVTLVSVL 298

Query: 180 LGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVV 239
             C+HL +L LGK +H+ + ++ +         L  MY KCG + +A  +F E+  +DV+
Sbjct: 299 SACAHLGALDLGKWIHRFIRRNKIEVGLFLGNALADMYAKCGCVLEAKGVFHEMHERDVI 358

Query: 240 TWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSM 299
           +W+ +I G A +G   +A   F +M ++G++P+ I+F+ LL AC HAGLVD G++YFD M
Sbjct: 359 SWSIIIMGLAMYGYANEAFNFFAEMIEDGLEPNDISFMGLLTACTHAGLVDKGLEYFDMM 418

Query: 300 VNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDL 359
              YGI  K +HY C+VDLL RAG+L +A  LI  MP +P   ++G LL  CR++K  + 
Sbjct: 419 PQVYGITPKIEHYGCVVDLLSRAGRLDQAESLINSMPMQPNVIVWGALLGGCRIYKDAER 478

Query: 360 AEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVG 419
            E     +  L+ +N +G  V LAN+YA+M + DD A  RL M++N  +K PG SWIE+ 
Sbjct: 479 GERVVWRILELD-SNHSGSLVYLANVYASMGRLDDAASCRLRMRDNKSMKTPGCSWIEIN 537

Query: 420 TVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSE 479
             V+EF  GD  HP+ + I+  ++EL+ +MK+AGY P  +  +H + EE KE  L  HSE
Sbjct: 538 NSVYEFFMGDSSHPQSLRIYSMIRELKWKMKVAGYKPKTDLVIHNIDEEEKEDALSTHSE 597

Query: 480 KLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTC 539
           KLA+AFGLI    GT IR+ KNLRVC DCH A K IS I +REI+VRD +RFHHFKDG C
Sbjct: 598 KLALAFGLINTSEGTTIRIVKNLRVCNDCHDAIKIISKIVEREIVVRDRSRFHHFKDGKC 657

Query: 540 S 540
           S
Sbjct: 658 S 658



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 69/309 (22%), Positives = 132/309 (42%), Gaps = 64/309 (20%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M V+  V+WN++++G+    G +  A+ +FD + + ++VS++ M+S       ++  A  
Sbjct: 188 MVVRDVVSWNTLISGYCFS-GMVDKARMVFDGMMEKNLVSWSTMISG-YARVGNLEEARQ 245

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK-----NSVSWSAMISG----- 110
            F+ +P+++  SWN MI+G+ Q +  A A +LF  M  +     N V+  +++S      
Sbjct: 246 LFENMPMRNVVSWNAMIAGYAQNEKYADAIELFRQMQHEGGLAPNDVTLVSVLSACAHLG 305

Query: 111 ------------------------------YIECGQLDKAVELFKVAPVKSVVAWTAMIS 140
                                         Y +CG + +A  +F     + V++W+ +I 
Sbjct: 306 ALDLGKWIHRFIRRNKIEVGLFLGNALADMYAKCGCVLEAKGVFHEMHERDVISWSIIIM 365

Query: 141 GYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK 200
           G   +GY     A +       MI  G+ PN  S   +L  C+H   +  G +   ++  
Sbjct: 366 GLAMYGY-----ANEAFNFFAEMIEDGLEPNDISFMGLLTACTHAGLVDKGLEYFDMM-- 418

Query: 201 SPLCKDTTALTPLISMY-------CKCGDLEDACKLFLEI-QRKDVVTWNAMISG---YA 249
                    +TP I  Y        + G L+ A  L   +  + +V+ W A++ G   Y 
Sbjct: 419 ----PQVYGITPKIEHYGCVVDLLSRAGRLDQAESLINSMPMQPNVIVWGALLGGCRIYK 474

Query: 250 QHGKGEKAL 258
              +GE+ +
Sbjct: 475 DAERGERVV 483



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 53/197 (26%), Positives = 96/197 (48%), Gaps = 13/197 (6%)

Query: 170 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 229
           P+  + +SVL  C+ L+ +  G++VH  V K     +      L+ +Y K G    A KL
Sbjct: 125 PDEYTFTSVLKACAGLAQVLEGQKVHCFVTKYGCESNLFVRNSLVDLYFKVGCNCIAQKL 184

Query: 230 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLV 289
           F E+  +DVV+WN +ISGY   G  +KA  +FD M    M+ + +++  ++      G +
Sbjct: 185 FDEMVVRDVVSWNTLISGYCFSGMVDKARMVFDGM----MEKNLVSWSTMISGYARVGNL 240

Query: 290 DLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK----PQPAIFG 345
           +   Q F++M     ++     +  M+    +  K  +A++L ++M  +    P      
Sbjct: 241 EEARQLFENMPMRNVVS-----WNAMIAGYAQNEKYADAIELFRQMQHEGGLAPNDVTLV 295

Query: 346 TLLSACRVHKRLDLAEF 362
           ++LSAC     LDL ++
Sbjct: 296 SVLSACAHLGALDLGKW 312


>gi|147812499|emb|CAN61868.1| hypothetical protein VITISV_002466 [Vitis vinifera]
          Length = 440

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 210/441 (47%), Positives = 292/441 (66%), Gaps = 6/441 (1%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI 164
           +A++  Y + G  D A ++F+    K V++WT++++G      V N   E+ L+L   M 
Sbjct: 6   NALVDMYAKXGYFDYAFDVFEKMTDKDVISWTSLVTGC-----VHNGSYEEALRLFCEMR 60

Query: 165 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 224
            +GI P+   +++VL  C+ L+ L+ GKQVH    KS L    +    L+SMY KCG +E
Sbjct: 61  IMGIHPDQIVIAAVLSACAELTVLEFGKQVHANFLKSGLGSSLSVDNSLVSMYAKCGCIE 120

Query: 225 DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 284
           DA K+F  ++ +DV+TW A+I GYAQ+G+G ++L  ++ M   G+KPD ITF+ LL AC+
Sbjct: 121 DANKVFDSMEIQDVITWTALIVGYAQNGRGRESLNFYNBMIASGVKPDFITFIGLLFACS 180

Query: 285 HAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIF 344
           HAGLV+ G  YF SM   YGI   P+HY CM+DLLGR+GKL+EA +L+ +M  +P   ++
Sbjct: 181 HAGLVEHGRSYFQSMEEVYGIKPGPEHYACMIDLLGRSGKLMEAKELLNQMAVQPDATVW 240

Query: 345 GTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKE 404
             LL+ACRVH  ++L E AA NLF L P NA   YV L+N+Y+A  KW++ A+ R  MK 
Sbjct: 241 KALLAACRVHGNVELGERAANNLFELEPKNAVP-YVLLSNLYSAAGKWEEAAKTRRLMKL 299

Query: 405 NNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHA 464
             V K PG SWIE+ + VH F S DR HP    I+ K+ E+   +K AGYVPD+ FALH 
Sbjct: 300 RGVSKEPGCSWIEMSSKVHRFMSEDRSHPRTAEIYSKVDEIMILIKEAGYVPDMNFALHD 359

Query: 465 VGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREII 524
           + EE KE  L +HSEKLA+AFGL+ +P G PIR+FKNLR+CGDCH A KY+S +  R +I
Sbjct: 360 MDEEGKELGLAYHSEKLAVAFGLLTMPPGAPIRIFKNLRICGDCHTAMKYVSGVFHRHVI 419

Query: 525 VRDTTRFHHFKDGTCSCGDYW 545
           +RD+  FHHF++G CSC DYW
Sbjct: 420 LRDSNCFHHFREGACSCSDYW 440



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 72/320 (22%), Positives = 129/320 (40%), Gaps = 79/320 (24%)

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM------PEKNSVSW------- 104
           AFD F+++  KD  SW ++++G V   +  +A  LF  M      P++  ++        
Sbjct: 21  AFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEMRIMGIHPDQIVIAAVLSACAE 80

Query: 105 --------------------------SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAM 138
                                     ++++S Y +CG ++ A ++F    ++ V+ WTA+
Sbjct: 81  LTVLEFGKQVHANFLKSGLGSSLSVDNSLVSMYAKCGCIEDANKVFDSMEIQDVITWTAL 140

Query: 139 ISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLV 198
           I      GY +N    + L     MI  G++P+  +   +L  CSH   ++ G+   Q +
Sbjct: 141 I-----VGYAQNGRGRESLNFYNBMIASGVKPDFITFIGLLFACSHAGLVEHGRSYFQSM 195

Query: 199 FKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKAL 258
                 ++   + P    Y        AC                MI    + GK  +A 
Sbjct: 196 ------EEVYGIKPGPEHY--------AC----------------MIDLLGRSGKLMEAK 225

Query: 259 RLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDL 318
            L ++M    ++PD+  + ALL AC   G V+LG +  +++       A P  Y  + +L
Sbjct: 226 ELLNQM---AVQPDATVWKALLAACRVHGNVELGERAANNLFELEPKNAVP--YVLLSNL 280

Query: 319 LGRAGKLVEAVDLIKKMPFK 338
              AGK  EA    + M  +
Sbjct: 281 YSAAGKWEEAAKTRRLMKLR 300


>gi|125588087|gb|EAZ28751.1| hypothetical protein OsJ_12773 [Oryza sativa Japonica Group]
          Length = 698

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 229/554 (41%), Positives = 341/554 (61%), Gaps = 20/554 (3%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQ-----PDVVSYNIMLS-CILLNSDDV-- 55
           ++ V+WN+++AG+  Q G    A +LF ++       PD  +   +LS C  L +  +  
Sbjct: 153 RSIVSWNAMIAGY-NQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGK 211

Query: 56  -VAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK--NSVSWSAMISGYI 112
            V A+     +      + N +IS + +  ++  AR +     E   N +S++A++ GY+
Sbjct: 212 QVHAYILRTEMAYNSQVT-NALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYV 270

Query: 113 ECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNA 172
           + G ++ A E+F V   + VVAWTAMI      GY +N   ++ + L R MI  G  PN+
Sbjct: 271 KIGDMESAREMFGVMNNRDVVAWTAMI-----VGYEQNGRNDEAIDLFRSMITCGPEPNS 325

Query: 173 SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLE 232
            +L++VL  C+ L+ L  GKQ+H    +S L + ++    +I+MY + G    A ++F +
Sbjct: 326 YTLAAVLSVCASLACLDYGKQIHCRAIRSLLEQSSSVSNAIITMYARSGSFPWARRMFDQ 385

Query: 233 I-QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDL 291
           +  RK+ +TW +MI   AQHG+GE+A+ LF++M   G++PD IT+V +L AC+HAG V+ 
Sbjct: 386 VCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGFVNE 445

Query: 292 GIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSAC 351
           G +Y+D + N++ IA +  HY CMVDLL RAG   EA + I++MP +P    +G+LLSAC
Sbjct: 446 GKRYYDQIKNEHQIAPEMSHYACMVDLLARAGLFSEAQEFIRRMPVEPDAIAWGSLLSAC 505

Query: 352 RVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMP 411
           RVHK  +LAE AA  L +++P N+ G Y  +AN+Y+A  +W D ARI  + KE  V K  
Sbjct: 506 RVHKNAELAELAAEKLLSIDPNNS-GAYSAIANVYSACGRWSDAARIWKARKEKAVRKET 564

Query: 412 GYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKE 471
           G+SW  + + +H F + D VHP+  +++     + + +K AG+VPDL+  LH V +E+KE
Sbjct: 565 GFSWTHIRSKIHVFGADDVVHPQRDAVYAMAARMWEEIKGAGFVPDLQSVLHDVDDELKE 624

Query: 472 QLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRF 531
           +LL  HSEKLAIAFGLI  P  T +RV KNLRVC DCH A K IS +  REIIVRD TRF
Sbjct: 625 ELLSRHSEKLAIAFGLISTPEKTTLRVMKNLRVCNDCHAAIKAISKVTDREIIVRDATRF 684

Query: 532 HHFKDGTCSCGDYW 545
           HHF+DG CSC DYW
Sbjct: 685 HHFRDGLCSCKDYW 698



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 94/356 (26%), Positives = 159/356 (44%), Gaps = 88/356 (24%)

Query: 16  FAKQRGKLKDAQELFDKIPQPDVVSYNIML------------------------------ 45
           FAK  G+L DA+ +F ++P+ D VS+ +M+                              
Sbjct: 2   FAKS-GRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFT 60

Query: 46  ------SCILLNSDDV-------VAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDL 92
                 SC +  +  V       V        +P+      N++++ + +  +   A  +
Sbjct: 61  LTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVA-----NSVLNMYGKCGDSETATTV 115

Query: 93  FLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSW 152
           F  MP ++  SW+AM+S     G++D A  LF+  P +S+V+W AMI+GY      +N  
Sbjct: 116 FERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYN-----QNGL 170

Query: 153 AEDGLKLL-RMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALT 211
               LKL  RM+    + P+  +++SVL  C++L ++++GKQVH  + ++ +  ++    
Sbjct: 171 DAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTN 230

Query: 212 PLISMYCKC---------------------------------GDLEDACKLFLEIQRKDV 238
            LIS Y K                                  GD+E A ++F  +  +DV
Sbjct: 231 ALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDV 290

Query: 239 VTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ 294
           V W AMI GY Q+G+ ++A+ LF  M   G +P+S T  A+L  C     +D G Q
Sbjct: 291 VAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQ 346


>gi|115455659|ref|NP_001051430.1| Os03g0775400 [Oryza sativa Japonica Group]
 gi|24899461|gb|AAN65031.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|108711328|gb|ABF99123.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113549901|dbj|BAF13344.1| Os03g0775400 [Oryza sativa Japonica Group]
 gi|215741536|dbj|BAG98031.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 804

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 229/554 (41%), Positives = 341/554 (61%), Gaps = 20/554 (3%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQ-----PDVVSYNIMLS-CILLNSDDV-- 55
           ++ V+WN+++AG+  Q G    A +LF ++       PD  +   +LS C  L +  +  
Sbjct: 259 RSIVSWNAMIAGY-NQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGK 317

Query: 56  -VAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK--NSVSWSAMISGYI 112
            V A+     +      + N +IS + +  ++  AR +     E   N +S++A++ GY+
Sbjct: 318 QVHAYILRTEMAYNSQVT-NALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYV 376

Query: 113 ECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNA 172
           + G ++ A E+F V   + VVAWTAMI      GY +N   ++ + L R MI  G  PN+
Sbjct: 377 KIGDMESAREMFGVMNNRDVVAWTAMI-----VGYEQNGRNDEAIDLFRSMITCGPEPNS 431

Query: 173 SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLE 232
            +L++VL  C+ L+ L  GKQ+H    +S L + ++    +I+MY + G    A ++F +
Sbjct: 432 YTLAAVLSVCASLACLDYGKQIHCRAIRSLLEQSSSVSNAIITMYARSGSFPWARRMFDQ 491

Query: 233 I-QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDL 291
           +  RK+ +TW +MI   AQHG+GE+A+ LF++M   G++PD IT+V +L AC+HAG V+ 
Sbjct: 492 VCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGFVNE 551

Query: 292 GIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSAC 351
           G +Y+D + N++ IA +  HY CMVDLL RAG   EA + I++MP +P    +G+LLSAC
Sbjct: 552 GKRYYDQIKNEHQIAPEMSHYACMVDLLARAGLFSEAQEFIRRMPVEPDAIAWGSLLSAC 611

Query: 352 RVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMP 411
           RVHK  +LAE AA  L +++P N+ G Y  +AN+Y+A  +W D ARI  + KE  V K  
Sbjct: 612 RVHKNAELAELAAEKLLSIDPNNS-GAYSAIANVYSACGRWSDAARIWKARKEKAVRKET 670

Query: 412 GYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKE 471
           G+SW  + + +H F + D VHP+  +++     + + +K AG+VPDL+  LH V +E+KE
Sbjct: 671 GFSWTHIRSKIHVFGADDVVHPQRDAVYAMAARMWEEIKGAGFVPDLQSVLHDVDDELKE 730

Query: 472 QLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRF 531
           +LL  HSEKLAIAFGLI  P  T +RV KNLRVC DCH A K IS +  REIIVRD TRF
Sbjct: 731 ELLSRHSEKLAIAFGLISTPEKTTLRVMKNLRVCNDCHAAIKAISKVTDREIIVRDATRF 790

Query: 532 HHFKDGTCSCGDYW 545
           HHF+DG CSC DYW
Sbjct: 791 HHFRDGLCSCKDYW 804



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 98/368 (26%), Positives = 166/368 (45%), Gaps = 88/368 (23%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIML------------------ 45
           +    WNS+L+ FAK  G+L DA+ +F ++P+ D VS+ +M+                  
Sbjct: 96  RNVFTWNSLLSMFAKS-GRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLD 154

Query: 46  ------------------SCILLNSDDV-------VAAFDFFQRLPIKDTASWNTMISGF 80
                             SC +  +  V       V        +P+      N++++ +
Sbjct: 155 MTADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVA-----NSVLNMY 209

Query: 81  VQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMIS 140
            +  +   A  +F  MP ++  SW+AM+S     G++D A  LF+  P +S+V+W AMI+
Sbjct: 210 GKCGDSETATTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIA 269

Query: 141 GYMKFGYVENSWAEDGLKLL-RMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVF 199
           GY      +N      LKL  RM+    + P+  +++SVL  C++L ++++GKQVH  + 
Sbjct: 270 GYN-----QNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYIL 324

Query: 200 KSPLCKDTTALTPLISMYCKC---------------------------------GDLEDA 226
           ++ +  ++     LIS Y K                                  GD+E A
Sbjct: 325 RTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESA 384

Query: 227 CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHA 286
            ++F  +  +DVV W AMI GY Q+G+ ++A+ LF  M   G +P+S T  A+L  C   
Sbjct: 385 REMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASL 444

Query: 287 GLVDLGIQ 294
             +D G Q
Sbjct: 445 ACLDYGKQ 452



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 81/306 (26%), Positives = 124/306 (40%), Gaps = 98/306 (32%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G L+DA+ LFD+IP                              L  ++  +WN+++S F
Sbjct: 79  GGLRDARRLFDEIP------------------------------LARRNVFTWNSLLSMF 108

Query: 81  VQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMIS 140
            +   +A AR +F  MPE+++VSW+ M+ G    G+  +A+                   
Sbjct: 109 AKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAI------------------- 149

Query: 141 GYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK 200
                            K L  M   G  P   +L++VL  C+   +  +G++VH  V K
Sbjct: 150 -----------------KTLLDMTADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVK 192

Query: 201 SPLCKDTTALTPLISMYCKCGDLEDAC-------------------------------KL 229
             L         +++MY KCGD E A                                 L
Sbjct: 193 LGLGSCVPVANSVLNMYGKCGDSETATTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESL 252

Query: 230 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE-GMKPDSITFVALLLACNHAGL 288
           F  +  + +V+WNAMI+GY Q+G   KAL+LF +M  E  M PD  T  ++L AC + G 
Sbjct: 253 FESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGN 312

Query: 289 VDLGIQ 294
           V +G Q
Sbjct: 313 VRIGKQ 318


>gi|359488035|ref|XP_003633690.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14820-like [Vitis vinifera]
          Length = 731

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 230/560 (41%), Positives = 328/560 (58%), Gaps = 46/560 (8%)

Query: 26  AQELFDKIPQPDVVSYNIMLSCILLNSD-----DVVAAFDFFQRLP-----------IKD 69
           A+ +FDK+ + DVVS++ M+  +  N +     +++   +F Q  P             D
Sbjct: 178 ARLVFDKMMERDVVSWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFAD 237

Query: 70  TA------------------------SWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWS 105
           TA                        +   ++  + +  ++  AR LF  + +K  VSW+
Sbjct: 238 TANMRMGKAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWT 297

Query: 106 AMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIG 165
           AMI+G I   +L++A  LF     + V+ WTAM+S Y +   ++ ++      L   M  
Sbjct: 298 AMIAGCIRSNRLEEARALFDSTQNRDVMIWTAMLSAYAQANCIDQAF-----NLFDQMRT 352

Query: 166 LGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLED 225
            G+RP   ++ S+L  C+   +L LGK VH  + K  +  D    T L+ MY KCGD+  
Sbjct: 353 SGVRPTKVTIVSLLSLCAVAGALDLGKWVHSYIDKERVEVDCILNTALVDMYAKCGDINA 412

Query: 226 ACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNH 285
           A +LF+E   +D+  WNA+I+G+A HG GE+AL +F +M+ +G+KP+ ITF+ LL AC+H
Sbjct: 413 AGRLFIEAISRDICMWNAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSH 472

Query: 286 AGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFG 345
           AGLV  G + F+ MV+ +G+  + +HY CMVDLLGRAG L EA ++IK MP KP   ++G
Sbjct: 473 AGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWG 532

Query: 346 TLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKEN 405
            L++ACR+HK   L E AA  L  + P N  G  V ++NIYAA  +W D A +R +MK  
Sbjct: 533 ALVAACRLHKNPQLGELAATQLLEIEPEN-CGYNVLMSNIYAAANRWSDAAGVRKTMKTV 591

Query: 406 NVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAV 465
            + K PG+S IEV   VHEF  GD+ HP++  I+E L E+ +++  AGYVPD    L  +
Sbjct: 592 GMKKEPGHSVIEVNGTVHEFLMGDQSHPQIRRINEMLAEMRRKLNEAGYVPDTSTVLLNI 651

Query: 466 GEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIV 525
            EE KE  L +HSEKLA+AFGLI     TPIR+ KNLRVC DCH ATK +S I  R IIV
Sbjct: 652 DEEEKETALTYHSEKLAMAFGLISTAPSTPIRIVKNLRVCNDCHAATKLLSKIYGRVIIV 711

Query: 526 RDTTRFHHFKDGTCSCGDYW 545
           RD  RFHHF++G CSCGDYW
Sbjct: 712 RDRNRFHHFREGYCSCGDYW 731



 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 90/359 (25%), Positives = 159/359 (44%), Gaps = 70/359 (19%)

Query: 6   TVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRL 65
           +  WN V+  + K R + ++A  ++ ++ + D    N M   +L     V          
Sbjct: 89  SAQWNFVITSYTK-RNQPRNALNVYAQLRKMDFEVDNFMAPSVLKACGQV---------- 137

Query: 66  PIKDTASWNTM---ISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVE 122
                 SW  +   I GFV KK +   RD+F+          +A++  Y EC  ++ A  
Sbjct: 138 ------SWTQLGKEIHGFVLKKGLD--RDVFVG---------NALMLMYGECACVEYARL 180

Query: 123 LFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGC 182
           +F     + VV+W+ MI    +     N   +  L+L+R M  + +RP+  ++ S++   
Sbjct: 181 VFDKMMERDVVSWSTMIRSLSR-----NKEFDMALELIREMNFMQVRPSEVAMVSMVNLF 235

Query: 183 SHLSSLQLGKQVHQLVFKSPLCKD--TTALTPLISMYCKCGD------------------ 222
           +  +++++GK +H  V ++   +       T L+ MY KCG                   
Sbjct: 236 ADTANMRMGKAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVS 295

Query: 223 -------------LEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGM 269
                        LE+A  LF   Q +DV+ W AM+S YAQ    ++A  LFD+M+  G+
Sbjct: 296 WTAMIAGCIRSNRLEEARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGV 355

Query: 270 KPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEA 328
           +P  +T V+LL  C  AG +DLG ++  S ++   +       T +VD+  + G +  A
Sbjct: 356 RPTKVTIVSLLSLCAVAGALDLG-KWVHSYIDKERVEVDCILNTALVDMYAKCGDINAA 413


>gi|296084942|emb|CBI28351.3| unnamed protein product [Vitis vinifera]
          Length = 770

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 234/535 (43%), Positives = 333/535 (62%), Gaps = 20/535 (3%)

Query: 23  LKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQ 82
           + DA+ +FD +   + VS+N M++  + N  D+  AF+ F R+ ++      T+ +  ++
Sbjct: 244 VSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDL-EAFELFYRMRLEGVKLTQTIFATVIK 302

Query: 83  K----KNMAKARDLFLAMPEKNSVSW-----SAMISGYIECGQLDKAVELF-KVAPVKSV 132
                K M+ A+ L   +  KN   +     +A++  Y +C ++D A +LF  +  V++V
Sbjct: 303 LCANIKEMSFAKQLHCQVI-KNGSDFDLNIKTALMVAYSKCSEIDDAFKLFCMMHGVQNV 361

Query: 133 VAWTAMISGYMKFGYVENSWAEDGLKLL-RMMIGLGIRPNASSLSSVLLGCSH-LSSLQL 190
           V+WTA+ISGY     V+N   +  + L  +M    G+ PN  + SSVL  C+   +S++ 
Sbjct: 362 VSWTAIISGY-----VQNGRTDRAMNLFCQMRREEGVEPNEFTFSSVLNACAAPTASVEQ 416

Query: 191 GKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQ 250
           GKQ H    KS         + L++MY K G++E A ++F     +D+V+WN+MISGYAQ
Sbjct: 417 GKQFHSCSIKSGFSNALCVSSALVTMYAKRGNIESANEVFKRQVDRDLVSWNSMISGYAQ 476

Query: 251 HGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPD 310
           HG G+K+L++F++M+ + ++ D ITF+ ++ AC HAGLV+ G +YFD MV DY I    +
Sbjct: 477 HGCGKKSLKIFEEMRSKNLELDGITFIGVISACTHAGLVNEGQRYFDLMVKDYHIVPTME 536

Query: 311 HYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNL 370
           HY+CMVDL  RAG L +A+DLI KMPF     I+ TLL+ACRVH  + L E AA  L +L
Sbjct: 537 HYSCMVDLYSRAGMLEKAMDLINKMPFPAGATIWRTLLAACRVHLNVQLGELAAEKLISL 596

Query: 371 NPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDR 430
            P ++A  YV L+NIYA    W + A++R  M    V K  GYSWIEV      F +GD 
Sbjct: 597 QPQDSAA-YVLLSNIYATAGNWQERAKVRKLMDMKKVKKEAGYSWIEVKNKTFSFMAGDL 655

Query: 431 VHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKV 490
            HP+   I+ KL+EL  R+K AGY PD ++ LH V EE KE +L  HSE+LAIAFGLI  
Sbjct: 656 SHPQSDRIYLKLEELSIRLKDAGYYPDTKYVLHDVEEEHKEVILSQHSERLAIAFGLIAT 715

Query: 491 PLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           P GTPI++ KNLRVCGDCH   K IS IE R+I+VRD+ RFHHFK G+CSCGDYW
Sbjct: 716 PPGTPIQIVKNLRVCGDCHTVIKLISKIEGRDIVVRDSNRFHHFKGGSCSCGDYW 770



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 69/223 (30%), Positives = 116/223 (52%), Gaps = 3/223 (1%)

Query: 140 SGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVF 199
           + ++ F +  N   ++ L L   +   G   + SSLS VL  C  L    +GKQVH    
Sbjct: 60  NNHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCGCLFDRIVGKQVHCQCI 119

Query: 200 KSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALR 259
           K    +D +  T L+ MY K   +ED  ++F E++ K+VV+W ++++GY Q+G  E+AL+
Sbjct: 120 KCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSLLAGYRQNGLNEQALK 179

Query: 260 LFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLL 319
           LF +M+ EG+KP+  TF A+L      G V+ G+Q   +MV   G+ +       MV++ 
Sbjct: 180 LFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQ-VHTMVIKSGLDSTIFVGNSMVNMY 238

Query: 320 GRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEF 362
            ++  + +A  +   M  + + A+    + A  V   LDL  F
Sbjct: 239 SKSLMVSDAKAVFDSM--ENRNAVSWNSMIAGFVTNGLDLEAF 279



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 98/179 (54%), Gaps = 5/179 (2%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI 164
           ++++  Y++   ++    +F    VK+VV+WT++++GY      +N   E  LKL   M 
Sbjct: 131 TSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSLLAGYR-----QNGLNEQALKLFSQMQ 185

Query: 165 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 224
             GI+PN  + ++VL G +   +++ G QVH +V KS L         +++MY K   + 
Sbjct: 186 LEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIFVGNSMVNMYSKSLMVS 245

Query: 225 DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC 283
           DA  +F  ++ ++ V+WN+MI+G+  +G   +A  LF +M+ EG+K     F  ++  C
Sbjct: 246 DAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGVKLTQTIFATVIKLC 304


>gi|242087005|ref|XP_002439335.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
 gi|241944620|gb|EES17765.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
          Length = 886

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 239/598 (39%), Positives = 343/598 (57%), Gaps = 71/598 (11%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFF-----QR 64
           N+++  +AK  G +KDA  +F+ +   DVVS+N M++     S    AAF+ F     + 
Sbjct: 298 NALIDTYAKC-GSMKDAVNVFNVMEFKDVVSWNAMVTG-YTQSGKFGAAFELFKNMRKEN 355

Query: 65  LPIKDTASWNTMISGFVQKKNMAKARDLFLAM----PEKNSVS----------------- 103
           +P+ D  +W+ +I+G+ Q+    +A D F  M     E NSV+                 
Sbjct: 356 IPL-DVITWSAVIAGYAQRGYGQEALDTFQQMILYGSEPNSVTIISLLSACASLGALSQG 414

Query: 104 ------------------------------WSAMISGYIECGQLDKAVELFKVAPVK--S 131
                                          +A+I  Y +C     A  +F   P +  +
Sbjct: 415 METHAYSLKKCLLSLDNDFGGDGDGEDLVVHNALIDMYSKCRSFKAARTIFNSIPRRERN 474

Query: 132 VVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIG--LGIRPNASSLSSVLLGCSHLSSLQ 189
           VV WT MI GY ++G      + D LKL   MI     + PNA ++S +L+ C+HLSSL+
Sbjct: 475 VVTWTVMIGGYAQYGD-----SNDALKLFSEMISKPYAVAPNAYTISCILMACAHLSSLR 529

Query: 190 LGKQVHQLVFKSPLCKDTTALTP--LISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISG 247
           +GKQ+H  V +    + +       LI MY KCGD++ A  +F  + +++ V+W +M+SG
Sbjct: 530 MGKQIHAYVTRHHEYESSVYFVANCLIDMYSKCGDVDTARNVFDSMPKRNEVSWTSMMSG 589

Query: 248 YAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAA 307
           Y  HG+G++AL +FDKM+  G  PD I+F+ LL AC+H+G+VD G+ YFD M +DYG+ A
Sbjct: 590 YGMHGRGKEALDIFDKMQKAGFVPDDISFLVLLYACSHSGMVDQGLDYFDIMRSDYGVIA 649

Query: 308 KPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNL 367
              HY C++DLL R+G+L +A   I++MP +P  AI+  LLSACRVH  ++LAE+A   L
Sbjct: 650 SAQHYACVIDLLARSGRLDKAWKTIQEMPMEPSAAIWVALLSACRVHSNVELAEYALNKL 709

Query: 368 FNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRS 427
            ++   N  G Y  ++NIYA  ++W DVARIR  MK++ + K PG SW++       F  
Sbjct: 710 VSMKAEND-GSYTLISNIYATARRWKDVARIRQLMKKSGIKKRPGCSWVQGKKGTASFFV 768

Query: 428 GDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGL 487
           GDR HP    I+  L+ L  R+K+ GYVP+  FALH V +E K  LL  HSEKLA+A+GL
Sbjct: 769 GDRSHPLSPEIYSLLERLIGRIKVMGYVPETNFALHDVDDEEKNNLLTEHSEKLALAYGL 828

Query: 488 IKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           +    G PIR+ KNLRVCGDCH A  YIS I   EIIVRD++RFHHFK+G+CSCG YW
Sbjct: 829 LTTSPGCPIRITKNLRVCGDCHSAFIYISKIVDHEIIVRDSSRFHHFKNGSCSCGGYW 886



 Score =  138 bits (347), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 104/388 (26%), Positives = 179/388 (46%), Gaps = 41/388 (10%)

Query: 3   VKTTVNWNSVLAGFAKQRGKLKDAQELFDKIP----------QPDVVS-YNIMLSCILLN 51
           +   ++WNS++A   K     + A +LF ++           + D++S  NI+ +C  L 
Sbjct: 215 IDDVISWNSIVAAHVKGSNP-RTALDLFSEMTTIVHEKATNERSDIISIVNILPACASLK 273

Query: 52  SDDVVAAFDFF--QRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMIS 109
           +         +  +     D    N +I  + +  +M  A ++F  M  K+ VSW+AM++
Sbjct: 274 ALPQTKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMKDAVNVFNVMEFKDVVSWNAMVT 333

Query: 110 GYIECGQLDKAVELFKVAPVKS----VVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIG 165
           GY + G+   A ELFK    ++    V+ W+A+I+GY + GY      ++ L   + MI 
Sbjct: 334 GYTQSGKFGAAFELFKNMRKENIPLDVITWSAVIAGYAQRGY-----GQEALDTFQQMIL 388

Query: 166 LGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCK------------DTTALTPL 213
            G  PN+ ++ S+L  C+ L +L  G + H    K  L              D      L
Sbjct: 389 YGSEPNSVTIISLLSACASLGALSQGMETHAYSLKKCLLSLDNDFGGDGDGEDLVVHNAL 448

Query: 214 ISMYCKCGDLEDACKLFLEIQRKD--VVTWNAMISGYAQHGKGEKALRLFDKM--KDEGM 269
           I MY KC   + A  +F  I R++  VVTW  MI GYAQ+G    AL+LF +M  K   +
Sbjct: 449 IDMYSKCRSFKAARTIFNSIPRRERNVVTWTVMIGGYAQYGDSNDALKLFSEMISKPYAV 508

Query: 270 KPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY-TCMVDLLGRAGKLVEA 328
            P++ T   +L+AC H   + +G Q    +   +   +       C++D+  + G +  A
Sbjct: 509 APNAYTISCILMACAHLSSLRMGKQIHAYVTRHHEYESSVYFVANCLIDMYSKCGDVDTA 568

Query: 329 VDLIKKMPFKPQPAIFGTLLSACRVHKR 356
            ++   MP K     + +++S   +H R
Sbjct: 569 RNVFDSMP-KRNEVSWTSMMSGYGMHGR 595



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 111/237 (46%), Gaps = 18/237 (7%)

Query: 98  EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKS---VVAWTAMISGYMKFGYVENSWAE 154
           E N    +A+++ Y   G L+ A  +F     K    V++W ++++ ++K      S   
Sbjct: 181 ESNVFVCNALVAMYSRSGSLEDASLVFDEITRKGIDDVISWNSIVAAHVK-----GSNPR 235

Query: 155 DGLKLLRMMIGL------GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTT 208
             L L   M  +        R +  S+ ++L  C+ L +L   K++H    ++    D  
Sbjct: 236 TALDLFSEMTTIVHEKATNERSDIISIVNILPACASLKALPQTKEIHSYAIRNGTFADAF 295

Query: 209 ALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEG 268
               LI  Y KCG ++DA  +F  ++ KDVV+WNAM++GY Q GK   A  LF  M+ E 
Sbjct: 296 VCNALIDTYAKCGSMKDAVNVFNVMEFKDVVSWNAMVTGYTQSGKFGAAFELFKNMRKEN 355

Query: 269 MKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKL 325
           +  D IT+ A++      G     +  F  M+  YG  ++P+  T ++ LL     L
Sbjct: 356 IPLDVITWSAVIAGYAQRGYGQEALDTFQQMIL-YG--SEPNSVT-IISLLSACASL 408



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 57/245 (23%), Positives = 111/245 (45%), Gaps = 19/245 (7%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI 164
           + +++ Y+ CG    A+ + +       V W  ++  +++ G ++ +     + +   M+
Sbjct: 87  TGVVASYLACGATSDALSVLERVVPSPAVWWNLLVRAHIEEGRLDRA-----IGVSCRML 141

Query: 165 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 224
             G +P+  +L   L  C  L S + G   H L+  +    +      L++MY + G LE
Sbjct: 142 RAGTKPDHFTLPYALKACGELPSYRSGSAFHGLICCNGFESNVFVCNALVAMYSRSGSLE 201

Query: 225 DACKLFLEIQRK---DVVTWNAMISGYAQHGKGEKALRLFDKM------KDEGMKPDSIT 275
           DA  +F EI RK   DV++WN++++ + +      AL LF +M      K    + D I+
Sbjct: 202 DASLVFDEITRKGIDDVISWNSIVAAHVKGSNPRTALDLFSEMTTIVHEKATNERSDIIS 261

Query: 276 FVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTC--MVDLLGRAGKLVEAVDLIK 333
            V +L AC     +    +     + +   A   D + C  ++D   + G + +AV++  
Sbjct: 262 IVNILPACASLKALPQTKEIHSYAIRNGTFA---DAFVCNALIDTYAKCGSMKDAVNVFN 318

Query: 334 KMPFK 338
            M FK
Sbjct: 319 VMEFK 323



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 72/132 (54%), Gaps = 12/132 (9%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDK-IPQPDVVSYN-IMLSCILLNSDDVVA---- 57
           +  V W  ++ G+A Q G   DA +LF + I +P  V+ N   +SCIL+    + +    
Sbjct: 473 RNVVTWTVMIGGYA-QYGDSNDALKLFSEMISKPYAVAPNAYTISCILMACAHLSSLRMG 531

Query: 58  --AFDFFQRLPIKDTASW---NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYI 112
                +  R    +++ +   N +I  + +  ++  AR++F +MP++N VSW++M+SGY 
Sbjct: 532 KQIHAYVTRHHEYESSVYFVANCLIDMYSKCGDVDTARNVFDSMPKRNEVSWTSMMSGYG 591

Query: 113 ECGQLDKAVELF 124
             G+  +A+++F
Sbjct: 592 MHGRGKEALDIF 603


>gi|296082284|emb|CBI21289.3| unnamed protein product [Vitis vinifera]
          Length = 581

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 228/551 (41%), Positives = 337/551 (61%), Gaps = 16/551 (2%)

Query: 4   KTTV-NWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSD---DVVAAF 59
           KT V +WNSV+A  A+  G   +A   F  + +  +        C + +     D+ +  
Sbjct: 38  KTNVFSWNSVIAELARS-GDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALLDLHSGR 96

Query: 60  DFFQRLPI----KDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECG 115
              Q+  I     D    + ++  + +   +  AR LF  +  +N VSW++MI+GY++  
Sbjct: 97  QAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMITGYVQND 156

Query: 116 QLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLG-IRPNASS 174
              +A+ +F     + V++W ++I+ Y      +N  + + +++   M+  G I  NA +
Sbjct: 157 DAHRALRVFDGMAERDVISWNSIIAVY-----AQNGMSTESMEIFHRMVKDGEINYNAVT 211

Query: 175 LSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ 234
           LS+VLL C+H  S +LGK +H  V K  L  +    T +I MYCKCG +E A K F  ++
Sbjct: 212 LSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMR 271

Query: 235 RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ 294
            K+V +W+AM++GY  HG  ++AL +F +M   G+KP+ ITFV++L AC+HAGL++ G  
Sbjct: 272 EKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAGLLEEGWH 331

Query: 295 YFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVH 354
           +F +M +++ +    +HY CMVDLLGRAG L EA DLIK M  +P   ++G LL ACR+H
Sbjct: 332 WFKAMSHEFDVEPGVEHYGCMVDLLGRAGYLKEAFDLIKGMKLRPDFVVWGALLGACRMH 391

Query: 355 KRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYS 414
           K +DL E +A  LF L+P N  G YV L+NIYA   +W+DV R+R+ MK + +VK PG+S
Sbjct: 392 KNVDLGEISARKLFELDPKN-CGYYVLLSNIYADAGRWEDVERMRILMKNSGLVKPPGFS 450

Query: 415 WIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLL 474
            +++   VH F  GDR HP+   I+E L++L  +++  GYVPD+   LH VG E KE +L
Sbjct: 451 LVDIKGRVHVFLVGDREHPQHEKIYEYLEKLSMKLQEVGYVPDMTSVLHDVGHEEKEMVL 510

Query: 475 LFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHF 534
             HSEKLA+AFG++    GT I + KNLRVCGDCH A K+IS I  REI+VRD+ RFHHF
Sbjct: 511 RVHSEKLAVAFGIMNTVPGTTIHIIKNLRVCGDCHTAIKFISKIVDREIVVRDSKRFHHF 570

Query: 535 KDGTCSCGDYW 545
           +DG CSCGDYW
Sbjct: 571 RDGLCSCGDYW 581



 Score = 43.5 bits (101), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 29/110 (26%), Positives = 57/110 (51%), Gaps = 9/110 (8%)

Query: 233 IQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDL- 291
           + + +V +WN++I+  A+ G   +ALR F  M+   +KP+  TF   + +C  + L+DL 
Sbjct: 36  VDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSC--SALLDLH 93

Query: 292 -GIQYFDSMVNDYGIAAKPDHY--TCMVDLLGRAGKLVEAVDLIKKMPFK 338
            G Q     +       +PD +  + +VD+  + G+L +A  L  ++  +
Sbjct: 94  SGRQAHQQALI---FGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHR 140


>gi|225445386|ref|XP_002281711.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 711

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 235/533 (44%), Positives = 326/533 (61%), Gaps = 15/533 (2%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPI----KDTASWNTM 76
           G L  A+++FDK+    VVS+  M+       D    A   F+R+ I     +  +   +
Sbjct: 186 GCLVSARKVFDKMVNKSVVSWATMIGA-YAQWDLPHEAIKLFRRMEIASVKPNEITLVNV 244

Query: 77  ISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISGYIECGQLDKAVELFKVAPVKSV 132
           ++   + +++  A+ +   + E     ++V  SA++  Y +CG    A +LF   P K++
Sbjct: 245 LTACARSRDLETAKQVHKYIDETGIGFHTVLTSALMDVYCKCGCYPLARDLFNKMPEKNL 304

Query: 133 VAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGK 192
             W  MI+G+     VE+S  E+ L L   M   G++ +  +++S+L+ C+HL +L+LGK
Sbjct: 305 FCWNIMINGH-----VEDSDYEEALSLFNEMQLSGVKGDKVTMASLLIACTHLGALELGK 359

Query: 193 QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHG 252
            +H  + K  +  D    T L+ MY KCG +E A ++F E+  KDV+TW A+I G A  G
Sbjct: 360 WLHVYIEKEKIEVDVALGTALVDMYAKCGSIESAMRVFQEMPEKDVMTWTALIVGLAMCG 419

Query: 253 KGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY 312
           +G KAL LF +M+   +KPD+ITFV +L AC+HAGLV+ GI YF+SM N YGI    +HY
Sbjct: 420 QGLKALELFHEMQMSEVKPDAITFVGVLAACSHAGLVNEGIAYFNSMPNKYGIQPSIEHY 479

Query: 313 TCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNP 372
            CMVD+LGRAG++ EA DLI+ MP  P   +   LLSACR+H  L +AE AA  L  L+P
Sbjct: 480 GCMVDMLGRAGRIAEAEDLIQNMPMAPDYFVLVGLLSACRIHGNLVVAERAAQQLIELDP 539

Query: 373 ANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVH 432
            N  G YV L+NIY++MK W+   ++R  M E N+ K PG S IEVG VVHEF  GD  H
Sbjct: 540 KN-GGTYVLLSNIYSSMKNWEAAKKMRELMVERNIKKPPGCSAIEVGGVVHEFVKGDVSH 598

Query: 433 PELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPL 492
           P+   I+E L ++ +R+K AGYVPD    L  + E+ KE  L  HSEKLAIAFGL+    
Sbjct: 599 PQSSEIYETLDDMMRRLKSAGYVPDKSEVLFDMDEKEKENELSLHSEKLAIAFGLLSTTP 658

Query: 493 GTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           GTPIRV KNLRVC DCH A K+IS +  REIIVRD  RFHHF  G+CSC D+W
Sbjct: 659 GTPIRVVKNLRVCSDCHSAMKFISEVYNREIIVRDRNRFHHFTKGSCSCRDFW 711



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 88/323 (27%), Positives = 159/323 (49%), Gaps = 12/323 (3%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD-TASWNTMISG 79
           G L  A+ +F++IP P   + N ++     N +    A  F+Q + ++       T  S 
Sbjct: 88  GSLPYARLVFNQIPNPTTFTCNSIIRG-YTNKNLPRQAILFYQLMMLQGLDPDRFTFPSL 146

Query: 80  FVQKKNMAKARDLFLAMPE----KNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAW 135
           F     + + + L     +     ++   + +++ Y  CG L  A ++F     KSVV+W
Sbjct: 147 FKSCGVLCEGKQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVVSW 206

Query: 136 TAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVH 195
             MI  Y ++         + +KL R M    ++PN  +L +VL  C+    L+  KQVH
Sbjct: 207 ATMIGAYAQW-----DLPHEAIKLFRRMEIASVKPNEITLVNVLTACARSRDLETAKQVH 261

Query: 196 QLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGE 255
           + + ++ +   T   + L+ +YCKCG    A  LF ++  K++  WN MI+G+ +    E
Sbjct: 262 KYIDETGIGFHTVLTSALMDVYCKCGCYPLARDLFNKMPEKNLFCWNIMINGHVEDSDYE 321

Query: 256 KALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCM 315
           +AL LF++M+  G+K D +T  +LL+AC H G ++LG ++    +    I       T +
Sbjct: 322 EALSLFNEMQLSGVKGDKVTMASLLIACTHLGALELG-KWLHVYIEKEKIEVDVALGTAL 380

Query: 316 VDLLGRAGKLVEAVDLIKKMPFK 338
           VD+  + G +  A+ + ++MP K
Sbjct: 381 VDMYAKCGSIESAMRVFQEMPEK 403



 Score = 44.7 bits (104), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 71/164 (43%), Gaps = 8/164 (4%)

Query: 175 LSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYC---KCGDLEDACKLFL 231
           L   LL     +++   KQ+H  + ++ L  D  + + +++ +C     G L  A  +F 
Sbjct: 40  LHPCLLSLEKCTTMSQLKQIHAQMLRTCLFVDPFSASKIVA-FCALHDSGSLPYARLVFN 98

Query: 232 EIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDL 291
           +I      T N++I GY       +A+  +  M  +G+ PD  TF +L  +C   G++  
Sbjct: 99  QIPNPTTFTCNSIIRGYTNKNLPRQAILFYQLMMLQGLDPDRFTFPSLFKSC---GVLCE 155

Query: 292 GIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335
           G Q         G A+       ++++    G LV A  +  KM
Sbjct: 156 GKQ-LHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKM 198


>gi|224125684|ref|XP_002319650.1| predicted protein [Populus trichocarpa]
 gi|222858026|gb|EEE95573.1| predicted protein [Populus trichocarpa]
          Length = 705

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 232/564 (41%), Positives = 325/564 (57%), Gaps = 55/564 (9%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G L  A+ LFDK+ + DVVS++ M+         +   + F QR       SW  MI+G+
Sbjct: 158 GSLVSARLLFDKMSERDVVSWSTMIRAY------ITLFYGFSQR----SIVSWTAMIAGY 207

Query: 81  VQKKNMAKARDLFLAMPEKNSVS------------------------------------- 103
           ++  ++ +   LF+ M E+N                                        
Sbjct: 208 IRCNDLEEGERLFVRMIEENVFPNDITMLSLIISCGFVGAVQLGKRLHAYILRNGFGMSL 267

Query: 104 --WSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLR 161
              +A++  Y +CG++  A  +F     K V+ WTAMIS Y +   ++ ++     +L  
Sbjct: 268 ALATALVDMYGKCGEIRSARAIFDSMKNKDVMTWTAMISAYAQANCIDYAF-----QLFV 322

Query: 162 MMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCG 221
            M   G+RPN  ++ S+L  C+   +L +GK  H  + K  +  D    T LI MY KCG
Sbjct: 323 QMRDNGVRPNELTMVSLLSLCAVNGALDMGKWFHAYIDKQGVEVDVILKTALIDMYAKCG 382

Query: 222 DLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLL 281
           D+  A +LF E   +D+ TWN M++GY  HG GEKAL+LF +M+  G+KP+ ITF+  L 
Sbjct: 383 DISGAQRLFSEAIDRDICTWNVMMAGYGMHGYGEKALKLFTEMETLGVKPNDITFIGALH 442

Query: 282 ACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQP 341
           AC+HAGLV  G   F+ M++D+G+  K +HY CMVDLLGRAG L EA  +I+ MP  P  
Sbjct: 443 ACSHAGLVVEGKGLFEKMIHDFGLVPKVEHYGCMVDLLGRAGLLDEAYKMIESMPVTPNI 502

Query: 342 AIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLS 401
           AI+G +L+AC++HK  ++ E AA  L  L P N  G  V ++NIYAA  +W+DVA +R +
Sbjct: 503 AIWGAMLAACKIHKNSNMGELAARELLALEPQN-CGYKVLMSNIYAAANRWNDVAGMRKA 561

Query: 402 MKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFA 461
           +K+  + K PG S IEV  +VH+F+ GD  HP +  I E L E+ K++K AGY+PD    
Sbjct: 562 VKDTGIKKEPGMSSIEVNGLVHDFKMGDTAHPLIEKISEMLAEMSKKLKEAGYLPDTSVV 621

Query: 462 LHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKR 521
           LH + EE KE  L +HSEKLA+AFGLI    GTPIRV KNLR+C DCH  TK +S I KR
Sbjct: 622 LHNIDEEEKETALNYHSEKLAMAFGLISTAPGTPIRVVKNLRICDDCHTVTKLLSKIYKR 681

Query: 522 EIIVRDTTRFHHFKDGTCSCGDYW 545
            IIVRD  RFHHF++G+CSCG YW
Sbjct: 682 VIIVRDRNRFHHFREGSCSCGGYW 705



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 84/268 (31%), Positives = 146/268 (54%), Gaps = 15/268 (5%)

Query: 67  IKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKV 126
           + D    N ++  + +  ++  AR LF  M E++ VSWS MI  YI          LF  
Sbjct: 141 VSDVFVVNALMQMYSECGSLVSARLLFDKMSERDVVSWSTMIRAYI---------TLFYG 191

Query: 127 APVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLS 186
              +S+V+WTAMI+GY++   +     E+G +L   MI   + PN  ++ S+++ C  + 
Sbjct: 192 FSQRSIVSWTAMIAGYIRCNDL-----EEGERLFVRMIEENVFPNDITMLSLIISCGFVG 246

Query: 187 SLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMIS 246
           ++QLGK++H  + ++         T L+ MY KCG++  A  +F  ++ KDV+TW AMIS
Sbjct: 247 AVQLGKRLHAYILRNGFGMSLALATALVDMYGKCGEIRSARAIFDSMKNKDVMTWTAMIS 306

Query: 247 GYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIA 306
            YAQ    + A +LF +M+D G++P+ +T V+LL  C   G +D+G ++F + ++  G+ 
Sbjct: 307 AYAQANCIDYAFQLFVQMRDNGVRPNELTMVSLLSLCAVNGALDMG-KWFHAYIDKQGVE 365

Query: 307 AKPDHYTCMVDLLGRAGKLVEAVDLIKK 334
                 T ++D+  + G +  A  L  +
Sbjct: 366 VDVILKTALIDMYAKCGDISGAQRLFSE 393



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 59/206 (28%), Positives = 100/206 (48%), Gaps = 25/206 (12%)

Query: 156 GLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLIS 215
            L     M  L I  ++  + SVL  CS +S  ++GK++H    K+ L  D   +  L+ 
Sbjct: 93  ALNTYTYMRKLDIEVDSFIIPSVLKACSQISVARMGKEIHGFSVKNGLVSDVFVVNALMQ 152

Query: 216 MYCKCGDLEDACKLFLEIQRKDVVTWN----------------------AMISGYAQHGK 253
           MY +CG L  A  LF ++  +DVV+W+                      AMI+GY +   
Sbjct: 153 MYSECGSLVSARLLFDKMSERDVVSWSTMIRAYITLFYGFSQRSIVSWTAMIAGYIRCND 212

Query: 254 GEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV-NDYGIAAKPDHY 312
            E+  RLF +M +E + P+ IT ++L+++C   G V LG +    ++ N +G++      
Sbjct: 213 LEEGERLFVRMIEENVFPNDITMLSLIISCGFVGAVQLGKRLHAYILRNGFGMSLALA-- 270

Query: 313 TCMVDLLGRAGKLVEAVDLIKKMPFK 338
           T +VD+ G+ G++  A  +   M  K
Sbjct: 271 TALVDMYGKCGEIRSARAIFDSMKNK 296


>gi|449438512|ref|XP_004137032.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Cucumis sativus]
 gi|449526872|ref|XP_004170437.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Cucumis sativus]
          Length = 667

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 231/572 (40%), Positives = 334/572 (58%), Gaps = 46/572 (8%)

Query: 13  LAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTAS 72
           L  F  + G+ K +  LF  +P+ +V+S+NI+++   L   D+ +A   F  +  ++ A+
Sbjct: 103 LLNFYSKLGQFKSSLVLFSNMPRRNVMSFNILING-YLQLGDLESAQKLFDEMSERNIAT 161

Query: 73  WNTMISGFVQKKNMAKARDLFLAMP----------------------------------- 97
           WN MI+G  Q +   +A  LF  M                                    
Sbjct: 162 WNAMIAGLTQFEFNKQALSLFKEMYGLGFLPDEFTLGSVLRGCAGLRSLLAGQEVHACLL 221

Query: 98  ----EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWA 153
               E +SV  S++   YI+ G L    +L K  P+++VVAW  +I+G       +N   
Sbjct: 222 KCGFELSSVVGSSLAHMYIKSGSLSDGEKLIKSMPIRTVVAWNTLIAGK-----AQNGCP 276

Query: 154 EDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPL 213
           E+ L    MM   G RP+  +  SVL  CS L++L  G+Q+H  V K+        ++ L
Sbjct: 277 EEVLNQYNMMKMAGFRPDKITFVSVLSACSELATLGQGQQIHAEVIKAGASSVLAVVSSL 336

Query: 214 ISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDS 273
           ISMY + G LED+ K F++ +  DVV W++MI+ Y  HG+GE+AL LF +M+D  M+ + 
Sbjct: 337 ISMYSRSGCLEDSIKAFVDRENFDVVLWSSMIAAYGFHGRGEEALELFHQMEDLKMEANE 396

Query: 274 ITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIK 333
           +TF++LL AC+H+GL + G +YFD MV  Y +  + +HYTC+VDLLGRAG+L EA  +I+
Sbjct: 397 VTFLSLLYACSHSGLKEKGTEYFDLMVKKYKLKPRIEHYTCVVDLLGRAGRLEEAEGMIR 456

Query: 334 KMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWD 393
            MP +P   I+ TLL+AC++HK  ++AE  +  +  L+P +AA  YV L+NI+A+ + W 
Sbjct: 457 SMPVQPDGIIWKTLLAACKLHKEAEMAERISEEIIKLDPLDAAS-YVLLSNIHASARNWL 515

Query: 394 DVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAG 453
           +V++IR +M++ +V K PG SW+E+  +VH+F  GD+ HP+   I   LKEL   +K  G
Sbjct: 516 NVSQIRKAMRDRSVRKEPGISWLELKNLVHQFSMGDKSHPQYFEIDLYLKELMSELKQHG 575

Query: 454 YVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATK 513
           YVP+L   LH +  E KE  L  HSEK AIAF L+      PIRV KNLRVC DCH A K
Sbjct: 576 YVPELGSVLHDMDNEEKEYNLAHHSEKFAIAFALMNTSENVPIRVMKNLRVCDDCHNAIK 635

Query: 514 YISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
            IS I  REIIVRD +RFHHFKDG CSCG+YW
Sbjct: 636 CISRIRNREIIVRDASRFHHFKDGECSCGNYW 667



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 98/316 (31%), Positives = 158/316 (50%), Gaps = 17/316 (5%)

Query: 21  GKLKDAQELFDK--IPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMIS 78
           G++K A + F       P + S+ ++ SCI L S   +        L I    S +  IS
Sbjct: 45  GRIKQAYDTFTSEIWSDPSLFSH-LLQSCIKLGS---LFGGKQVHSLIITSGGSKDKFIS 100

Query: 79  G----FVQKKNMAKAR-DLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVV 133
                F  K    K+   LF  MP +N +S++ +I+GY++ G L+ A +LF     +++ 
Sbjct: 101 NHLLNFYSKLGQFKSSLVLFSNMPRRNVMSFNILINGYLQLGDLESAQKLFDEMSERNIA 160

Query: 134 AWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ 193
            W AMI+G  +F +      +  L L + M GLG  P+  +L SVL GC+ L SL  G++
Sbjct: 161 TWNAMIAGLTQFEF-----NKQALSLFKEMYGLGFLPDEFTLGSVLRGCAGLRSLLAGQE 215

Query: 194 VHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGK 253
           VH  + K      +   + L  MY K G L D  KL   +  + VV WN +I+G AQ+G 
Sbjct: 216 VHACLLKCGFELSSVVGSSLAHMYIKSGSLSDGEKLIKSMPIRTVVAWNTLIAGKAQNGC 275

Query: 254 GEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYT 313
            E+ L  ++ MK  G +PD ITFV++L AC+    +  G Q   + V   G ++     +
Sbjct: 276 PEEVLNQYNMMKMAGFRPDKITFVSVLSACSELATLGQG-QQIHAEVIKAGASSVLAVVS 334

Query: 314 CMVDLLGRAGKLVEAV 329
            ++ +  R+G L +++
Sbjct: 335 SLISMYSRSGCLEDSI 350


>gi|356545843|ref|XP_003541343.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Glycine max]
          Length = 747

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 230/559 (41%), Positives = 326/559 (58%), Gaps = 46/559 (8%)

Query: 26  AQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKN 85
           A++ FD++P+ +VV YN +++  L+    +  +   F  +  KD+ SW  MI+GF Q   
Sbjct: 196 ARQAFDEMPEKNVVMYNTLIAG-LMRCSRIEDSRQLFYDMQEKDSISWTAMIAGFTQNGL 254

Query: 86  MAKARDLFLAMP---------------------------------------EKNSVSWSA 106
             +A DLF  M                                        + N    SA
Sbjct: 255 DREAIDLFREMRLENLEMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYQDNIFVGSA 314

Query: 107 MISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGL 166
           ++  Y +C  +  A  +F+    K+VV+WTAM+ GY + GY     +E+ +K+   M   
Sbjct: 315 LVDMYCKCKSIKSAETVFRKMNCKNVVSWTAMLVGYGQNGY-----SEEAVKIFCDMQNN 369

Query: 167 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 226
           GI P+  +L SV+  C++L+SL+ G Q H     S L    T    L+++Y KCG +ED+
Sbjct: 370 GIEPDDFTLGSVISSCANLASLEEGAQFHCRALVSGLISFITVSNALVTLYGKCGSIEDS 429

Query: 227 CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHA 286
            +LF E+   D V+W A++SGYAQ GK  + LRLF+ M   G KPD +TF+ +L AC+ A
Sbjct: 430 HRLFSEMSYVDEVSWTALVSGYAQFGKANETLRLFESMLAHGFKPDKVTFIGVLSACSRA 489

Query: 287 GLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGT 346
           GLV  G Q F+SM+ ++ I    DHYTCM+DL  RAG+L EA   I KMPF P    + +
Sbjct: 490 GLVQKGNQIFESMIKEHRIIPIEDHYTCMIDLFSRAGRLEEARKFINKMPFSPDAIGWAS 549

Query: 347 LLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENN 406
           LLS+CR H+ +++ ++AA +L  L P N A  Y+ L++IYAA  KW++VA +R  M++  
Sbjct: 550 LLSSCRFHRNMEIGKWAAESLLKLEPHNTAS-YILLSSIYAAKGKWEEVANLRKGMRDKG 608

Query: 407 VVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVG 466
           + K PG SWI+    VH F + D+ +P    I+ +L++L  +M   GYVPD+   LH V 
Sbjct: 609 LRKEPGCSWIKYKNQVHIFSADDQSNPFSDQIYSELEKLNYKMVQEGYVPDMNSVLHDVD 668

Query: 467 EEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVR 526
           +  K ++L  HSEKLAIAFGLI +P G PIRV KNLRVCGDCH ATKYIS I +REI+VR
Sbjct: 669 DSEKIKMLNHHSEKLAIAFGLIFIPPGLPIRVVKNLRVCGDCHNATKYISKITQREILVR 728

Query: 527 DTTRFHHFKDGTCSCGDYW 545
           D  RFH FKDG CSCGD+W
Sbjct: 729 DAARFHLFKDGRCSCGDFW 747



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 88/330 (26%), Positives = 153/330 (46%), Gaps = 69/330 (20%)

Query: 55  VVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIEC 114
           V  A   F  +P K+   +NT+I+G ++   +  +R LF  M EK+S+SW+AMI+G+ + 
Sbjct: 193 VFCARQAFDEMPEKNVVMYNTLIAGLMRCSRIEDSRQLFYDMQEKDSISWTAMIAGFTQN 252

Query: 115 GQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASS 174
           G   +A++LF+                            E  L+ L M        +  +
Sbjct: 253 GLDREAIDLFR----------------------------EMRLENLEM--------DQYT 276

Query: 175 LSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ 234
             SVL  C  + +LQ GKQVH  + ++    +    + L+ MYCKC  ++ A  +F ++ 
Sbjct: 277 FGSVLTACGGVMALQEGKQVHAYIIRTDYQDNIFVGSALVDMYCKCKSIKSAETVFRKMN 336

Query: 235 RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ 294
            K+VV+W AM+ GY Q+G  E+A+++F  M++ G++PD  T  +++ +C +   ++ G Q
Sbjct: 337 CKNVVSWTAMLVGYGQNGYSEEAVKIFCDMQNNGIEPDDFTLGSVISSCANLASLEEGAQ 396

Query: 295 YF---------------DSMVNDYGIAAKPD---------------HYTCMVDLLGRAGK 324
           +                +++V  YG     +                +T +V    + GK
Sbjct: 397 FHCRALVSGLISFITVSNALVTLYGKCGSIEDSHRLFSEMSYVDEVSWTALVSGYAQFGK 456

Query: 325 LVEAVDLIKKM---PFKPQPAIFGTLLSAC 351
             E + L + M    FKP    F  +LSAC
Sbjct: 457 ANETLRLFESMLAHGFKPDKVTFIGVLSAC 486



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 68/242 (28%), Positives = 117/242 (48%), Gaps = 37/242 (15%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVV 133
           N ++S + +   +  AR +F  MP++N  SW+ ++S Y +   L +   +F   P + +V
Sbjct: 48  NNLVSAYAKFDRITYARRVFDQMPQRNLYSWNTLLSSYSKLACLPEMERVFHAMPTRDMV 107

Query: 134 AWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLG-IRPNASSLSSVLLGCSHLSSLQLGK 192
           +W ++IS Y   G++  S     +K   +M+  G    N  +LS++L+  S    + LG 
Sbjct: 108 SWNSLISAYAGRGFLLQS-----VKAYNLMLYNGPFNLNRIALSTMLILASKQGCVHLGL 162

Query: 193 QVHQLVFKSPLCKDTTALTPLISMYCK-------------------------------CG 221
           QVH  V K          +PL+ MY K                               C 
Sbjct: 163 QVHGHVVKFGFQSYVFVGSPLVDMYSKTGLVFCARQAFDEMPEKNVVMYNTLIAGLMRCS 222

Query: 222 DLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLL 281
            +ED+ +LF ++Q KD ++W AMI+G+ Q+G   +A+ LF +M+ E ++ D  TF ++L 
Sbjct: 223 RIEDSRQLFYDMQEKDSISWTAMIAGFTQNGLDREAIDLFREMRLENLEMDQYTFGSVLT 282

Query: 282 AC 283
           AC
Sbjct: 283 AC 284


>gi|297738895|emb|CBI28140.3| unnamed protein product [Vitis vinifera]
          Length = 580

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 225/478 (47%), Positives = 303/478 (63%), Gaps = 7/478 (1%)

Query: 69  DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAP 128
           D    NT+++ +     +  AR +F  M  K+ VSW+ MI  Y +     +A++LF+   
Sbjct: 109 DAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVVSWATMIGAYAQWDLPHEAIKLFRRME 168

Query: 129 VKS-VVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSS 187
           + S +  W  MI+G+     VE+S  E+ L L   M   G++ +  +++S+L+ C+HL +
Sbjct: 169 IASNLFCWNIMINGH-----VEDSDYEEALSLFNEMQLSGVKGDKVTMASLLIACTHLGA 223

Query: 188 LQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISG 247
           L+LGK +H  + K  +  D    T L+ MY KCG +E A ++F E+  KDV+TW A+I G
Sbjct: 224 LELGKWLHVYIEKEKIEVDVALGTALVDMYAKCGSIESAMRVFQEMPEKDVMTWTALIVG 283

Query: 248 YAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAA 307
            A  G+G KAL LF +M+   +KPD+ITFV +L AC+HAGLV+ GI YF+SM N YGI  
Sbjct: 284 LAMCGQGLKALELFHEMQMSEVKPDAITFVGVLAACSHAGLVNEGIAYFNSMPNKYGIQP 343

Query: 308 KPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNL 367
             +HY CMVD+LGRAG++ EA DLI+ MP  P   +   LLSACR+H  L +AE AA  L
Sbjct: 344 SIEHYGCMVDMLGRAGRIAEAEDLIQNMPMAPDYFVLVGLLSACRIHGNLVVAERAAQQL 403

Query: 368 FNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRS 427
             L+P N  G YV L+NIY++MK W+   ++R  M E N+ K PG S IEVG VVHEF  
Sbjct: 404 IELDPKN-GGTYVLLSNIYSSMKNWEAAKKMRELMVERNIKKPPGCSAIEVGGVVHEFVK 462

Query: 428 GDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGL 487
           GD  HP+   I+E L ++ +R+K AGYVPD    L  + E+ KE  L  HSEKLAIAFGL
Sbjct: 463 GDVSHPQSSEIYETLDDMMRRLKSAGYVPDKSEVLFDMDEKEKENELSLHSEKLAIAFGL 522

Query: 488 IKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           +    GTPIRV KNLRVC DCH A K+IS +  REIIVRD  RFHHF  G+CSC D+W
Sbjct: 523 LSTTPGTPIRVVKNLRVCSDCHSAMKFISEVYNREIIVRDRNRFHHFTKGSCSCRDFW 580



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 65/258 (25%), Positives = 107/258 (41%), Gaps = 41/258 (15%)

Query: 113 ECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNA 172
           + G L  A  +F   P  +     ++I GY        +     +   ++M+  G+ P+ 
Sbjct: 24  DSGSLPYARLVFNQIPNPTTFTCNSIIRGY-----TNKNLPRQAILFYQLMMLQGLDPDR 78

Query: 173 SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLE 232
            +  S+   C  L     GKQ+H    K     D      L++MY  CG L  A K+F +
Sbjct: 79  FTFPSLFKSCGVLCE---GKQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDK 135

Query: 233 IQRKDVVTWNAMISGYAQ--------------------------------HGKGEKALRL 260
           +  K VV+W  MI  YAQ                                    E+AL L
Sbjct: 136 MVNKSVVSWATMIGAYAQWDLPHEAIKLFRRMEIASNLFCWNIMINGHVEDSDYEEALSL 195

Query: 261 FDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLG 320
           F++M+  G+K D +T  +LL+AC H G ++LG ++    +    I       T +VD+  
Sbjct: 196 FNEMQLSGVKGDKVTMASLLIACTHLGALELG-KWLHVYIEKEKIEVDVALGTALVDMYA 254

Query: 321 RAGKLVEAVDLIKKMPFK 338
           + G +  A+ + ++MP K
Sbjct: 255 KCGSIESAMRVFQEMPEK 272



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 74/310 (23%), Positives = 111/310 (35%), Gaps = 80/310 (25%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPI-KDTASWNTMISG 79
           G L  A+++FDK+    VVS+  M+       D    A   F+R+ I  +   WN MI+G
Sbjct: 124 GCLVSARKVFDKMVNKSVVSWATMIGA-YAQWDLPHEAIKLFRRMEIASNLFCWNIMING 182

Query: 80  FVQKKNMAKARDLFLAMP----------------------------------EKNSVS-- 103
            V+  +  +A  LF  M                                   EK  +   
Sbjct: 183 HVEDSDYEEALSLFNEMQLSGVKGDKVTMASLLIACTHLGALELGKWLHVYIEKEKIEVD 242

Query: 104 ---WSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLL 160
               +A++  Y +CG ++ A+ +F+  P K V+ WTA+I G    G          L+L 
Sbjct: 243 VALGTALVDMYAKCGSIESAMRVFQEMPEKDVMTWTALIVGLAMCGQ-----GLKALELF 297

Query: 161 RMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKC 220
             M    ++P+A +   VL  CSH   +  G       F S    +   + P I  Y   
Sbjct: 298 HEMQMSEVKPDAITFVGVLAACSHAGLVNEGIA----YFNS--MPNKYGIQPSIEHY--- 348

Query: 221 GDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 280
                                  M+    + G+  +A  L   M    M PD    V LL
Sbjct: 349 ---------------------GCMVDMLGRAGRIAEAEDLIQNMP---MAPDYFVLVGLL 384

Query: 281 LACN-HAGLV 289
            AC  H  LV
Sbjct: 385 SACRIHGNLV 394



 Score = 45.1 bits (105), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 58/277 (20%), Positives = 121/277 (43%), Gaps = 24/277 (8%)

Query: 9   WNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAA------FDFF 62
           WN ++ G  +     ++A  LF+++    V    + ++ +L+    + A         + 
Sbjct: 176 WNIMINGHVED-SDYEEALSLFNEMQLSGVKGDKVTMASLLIACTHLGALELGKWLHVYI 234

Query: 63  QRLPIK-DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAV 121
           ++  I+ D A    ++  + +  ++  A  +F  MPEK+ ++W+A+I G   CGQ  KA+
Sbjct: 235 EKEKIEVDVALGTALVDMYAKCGSIESAMRVFQEMPEKDVMTWTALIVGLAMCGQGLKAL 294

Query: 122 ELF---KVAPVK-SVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIG-LGIRPNASSLS 176
           ELF   +++ VK   + +  +++     G V      +G+     M    GI+P+     
Sbjct: 295 ELFHEMQMSEVKPDAITFVGVLAACSHAGLV-----NEGIAYFNSMPNKYGIQPSIEHYG 349

Query: 177 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDL---EDACKLFLEI 233
            ++     L       +   L+   P+  D   L  L+S     G+L   E A +  +E+
Sbjct: 350 CMV---DMLGRAGRIAEAEDLIQNMPMAPDYFVLVGLLSACRIHGNLVVAERAAQQLIEL 406

Query: 234 QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMK 270
             K+  T+  + + Y+     E A ++ + M +  +K
Sbjct: 407 DPKNGGTYVLLSNIYSSMKNWEAAKKMRELMVERNIK 443


>gi|225445812|ref|XP_002275298.1| PREDICTED: pentatricopeptide repeat-containing protein At4g30700
           [Vitis vinifera]
          Length = 781

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 230/541 (42%), Positives = 326/541 (60%), Gaps = 15/541 (2%)

Query: 13  LAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTAS 72
           LA    + G+++ A+ LF +I QPD+VSYN M+S    N ++  ++   F+ L +     
Sbjct: 248 LACLYSKCGEIETARLLFGQIGQPDLVSYNAMISGYTCN-NETESSVRLFKELLVSGEKV 306

Query: 73  WNTMISGFVQ------KKNMAKARDLFLA--MPEKNSVSWSAMISGYIECGQLDKAVELF 124
            ++ I G +         ++ +    F        NS   +A+ + Y    +++ A  LF
Sbjct: 307 NSSSIVGLIPVFFPFGHLHLTRCIHGFCTKSGVVSNSSVSTALTTVYSRLNEIESARLLF 366

Query: 125 KVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSH 184
             +  KS+ +W AMISGY      +N   E  + L + M    +RPN  +++S+L  C+ 
Sbjct: 367 DESSEKSLASWNAMISGY-----AQNGLTEKAISLFQEMQKCEVRPNPVTVTSILSACAQ 421

Query: 185 LSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAM 244
           L +L LGK VH L+ +     +    T LI MY KCG + +A +LF  +  K+ VTWNAM
Sbjct: 422 LGALSLGKWVHDLINRESFESNIFVSTALIDMYAKCGSITEAQRLFSMMPEKNAVTWNAM 481

Query: 245 ISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYG 304
           ISGY  HG G +AL LF++M    + P  +TF+++L AC+HAGLV  G + F SMV+D+G
Sbjct: 482 ISGYGLHGYGHEALNLFNEMLHSRVSPTGVTFLSVLYACSHAGLVREGDEIFRSMVHDHG 541

Query: 305 IAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAA 364
               P+HY CMVDLLGRAG L +A+D I+KMP +P P ++G LL AC +HK  +LA  A+
Sbjct: 542 FEPLPEHYACMVDLLGRAGNLDKALDFIRKMPVEPGPPVWGALLGACMIHKDANLARLAS 601

Query: 365 MNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHE 424
             LF L+P N  G YV L+NIY+A + + + A +R  +K   + K PG + IEV   +H 
Sbjct: 602 DKLFELDPQN-VGYYVLLSNIYSAGQNYPEAASVRGVVKRRKLAKTPGCTLIEVANTLHI 660

Query: 425 FRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIA 484
           F SGD+ HP+  +I+  L++L  +M+ AG+  +   ALH V EE KE ++  HSEKLAIA
Sbjct: 661 FTSGDQSHPQATAIYAMLEKLTGKMREAGFQTETGTALHDVEEEEKELMVKVHSEKLAIA 720

Query: 485 FGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDY 544
           FGLI    GT IR+ KNLRVC DCH ATK+IS I +R I+VRD  RFHHFKDG CSCGDY
Sbjct: 721 FGLITSEPGTEIRIIKNLRVCLDCHNATKFISKITERVIVVRDANRFHHFKDGICSCGDY 780

Query: 545 W 545
           W
Sbjct: 781 W 781



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 72/273 (26%), Positives = 126/273 (46%), Gaps = 30/273 (10%)

Query: 23  LKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQ 82
           +  A  LF  IP PD+  YN+++    LN+    +A   +  L        +     FV 
Sbjct: 58  IDQASLLFSTIPNPDLFLYNVLIRAFSLNNSPS-SAVSLYTHLRKSTPLEPDNFTYAFVI 116

Query: 83  KKNMAK---------------ARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVA 127
               +                  DLF+          SA+++ Y +  ++  A ++F   
Sbjct: 117 SGASSLGLGLLLHAHSIVAGFGSDLFVG---------SAIVACYFKFSRVAAARKVFDGM 167

Query: 128 PVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSS 187
             +  V W  M+SG +K     NS  ++ + +   M+  GI  +++++++VL G + L  
Sbjct: 168 LERDTVLWNTMVSGLVK-----NSCFDEAILIFGDMVKGGIGFDSTTVAAVLPGVAELQD 222

Query: 188 LQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISG 247
           L LG  +  L  K         +T L  +Y KCG++E A  LF +I + D+V++NAMISG
Sbjct: 223 LALGMGIQCLAMKVGFHSHAYVITGLACLYSKCGEIETARLLFGQIGQPDLVSYNAMISG 282

Query: 248 YAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 280
           Y  + + E ++RLF ++   G K +S + V L+
Sbjct: 283 YTCNNETESSVRLFKELLVSGEKVNSSSIVGLI 315



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 73/302 (24%), Positives = 126/302 (41%), Gaps = 66/302 (21%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKI------PQPDVVSYNIMLSCILLNSDDVVA 57
           K+  +WN++++G+A Q G  + A  LF ++      P P  V+ +I+ +C  L +  +  
Sbjct: 372 KSLASWNAMISGYA-QNGLTEKAISLFQEMQKCEVRPNPVTVT-SILSACAQLGALSLGK 429

Query: 58  -AFDFFQRLPIKDTASWNT-MISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECG 115
              D   R   +     +T +I  + +  ++ +A+ LF  MPEKN+V+W+AMISGY    
Sbjct: 430 WVHDLINRESFESNIFVSTALIDMYAKCGSITEAQRLFSMMPEKNAVTWNAMISGY---- 485

Query: 116 QLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSL 175
                                    G   +G+       + L L   M+   + P   + 
Sbjct: 486 -------------------------GLHGYGH-------EALNLFNEMLHSRVSPTGVTF 513

Query: 176 SSVLLGCSHLSSLQLGKQ-----VHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 230
            SVL  CSH   ++ G +     VH   F+ PL +    +  L+    + G+L+ A    
Sbjct: 514 LSVLYACSHAGLVREGDEIFRSMVHDHGFE-PLPEHYACMVDLLG---RAGNLDKA---- 565

Query: 231 LEIQRKDVV-----TWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNH 285
           L+  RK  V      W A++     H     A    DK+ +  + P ++ +  LL     
Sbjct: 566 LDFIRKMPVEPGPPVWGALLGACMIHKDANLARLASDKLFE--LDPQNVGYYVLLSNIYS 623

Query: 286 AG 287
           AG
Sbjct: 624 AG 625


>gi|224138422|ref|XP_002322810.1| predicted protein [Populus trichocarpa]
 gi|222867440|gb|EEF04571.1| predicted protein [Populus trichocarpa]
          Length = 562

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 227/564 (40%), Positives = 332/564 (58%), Gaps = 46/564 (8%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G++++A   F+ +P  +++S+NI+++  + + D + +A   F  +  ++ A+WN M+SG 
Sbjct: 6   GEIQEAIAFFNAMPMRNIMSHNILINGHVQHGD-LDSAIKVFDEMLERNVATWNAMVSGL 64

Query: 81  VQKKNMAKARDLFLAMPEK---------------------------------------NS 101
           +Q +       LF  M E                                        N 
Sbjct: 65  IQFEFNENGLFLFREMHELGFLPDEFTLGSVLRGCAGLRASYAGKQVHAYVLKYGYEFNL 124

Query: 102 VSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLR 161
           V  S++   Y++ G L +  ++ K   +++VVAW  +I+G  + G+ E       L L  
Sbjct: 125 VVGSSLAHMYMKSGSLGEGEKVIKAMRIRNVVAWNTLIAGNAQNGHFEGV-----LDLYN 179

Query: 162 MMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCG 221
           MM   G+RP+  +L SV+   + L++L  G+Q+H    K+        L+ LISMY KCG
Sbjct: 180 MMKMSGLRPDKITLVSVISSSAELATLFQGQQIHAEAIKAGANSAVAVLSSLISMYSKCG 239

Query: 222 DLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLL 281
            LED+ K  L+ +  D V W++MI+ Y  HG+GE+A+ LF++M+ EG+  + +TF++LL 
Sbjct: 240 CLEDSMKALLDCEHPDSVLWSSMIAAYGFHGRGEEAVHLFEQMEQEGLGGNDVTFLSLLY 299

Query: 282 ACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQP 341
           AC+H GL + G+ +F  MV  YG+  + +HYTC+VDLLGR+G L EA  +I+ MP +   
Sbjct: 300 ACSHNGLKEKGMGFFKLMVEKYGLKPRLEHYTCVVDLLGRSGCLDEAEAMIRSMPLEADV 359

Query: 342 AIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLS 401
            I+ TLLSACR+H+  D+A   A  +  LNP ++A  YV L+NI+A+ K+W DV+++R +
Sbjct: 360 VIWKTLLSACRIHRNADMATRTAEEILRLNPQDSA-TYVLLSNIHASAKRWKDVSKVRTT 418

Query: 402 MKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFA 461
           M++ NV K PG SW+EV   V +F  GD+ HP    I   LKEL + MKL GYVPD    
Sbjct: 419 MRDRNVKKEPGVSWLEVKNRVFQFSMGDKSHPMSEEIDLYLKELMEEMKLRGYVPDTATV 478

Query: 462 LHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKR 521
            H    E KE  L+ HSEKLAIAFGL+ +P G+PIRV KNLR+C DCH A K IS I  R
Sbjct: 479 FHDTDSEEKENSLVNHSEKLAIAFGLMNIPPGSPIRVMKNLRICSDCHVAIKLISDINNR 538

Query: 522 EIIVRDTTRFHHFKDGTCSCGDYW 545
           EIIVRDT+RFHHFK G CSCGDYW
Sbjct: 539 EIIVRDTSRFHHFKHGKCSCGDYW 562



 Score = 44.3 bits (103), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 28/108 (25%), Positives = 57/108 (52%), Gaps = 7/108 (6%)

Query: 216 MYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSIT 275
           MY K G++++A   F  +  +++++ N +I+G+ QHG  + A+++FD+M    ++ +  T
Sbjct: 1   MYFKMGEIQEAIAFFNAMPMRNIMSHNILINGHVQHGDLDSAIKVFDEM----LERNVAT 56

Query: 276 FVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAG 323
           + A++         + G+  F  M   + +   PD +T    L G AG
Sbjct: 57  WNAMVSGLIQFEFNENGLFLFREM---HELGFLPDEFTLGSVLRGCAG 101


>gi|359475558|ref|XP_003631701.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 848

 Score =  433 bits (1114), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 235/546 (43%), Positives = 341/546 (62%), Gaps = 19/546 (3%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK- 68
           N+++  +AK  G L DAQ++F ++   DVVS+N +++    N DD V A  FF ++ +  
Sbjct: 312 NALINMYAK-FGNLGDAQKVFQQMFLRDVVSWNSIIAAYEQN-DDPVTARGFFFKMQLNG 369

Query: 69  ---DTASWNTMISGFVQKKNMAKARDLFLAMPEKN-----SVSWSAMISGYIECGQLDKA 120
              D  +  ++ S   Q ++   +R +   +  +       V  +A++  Y + G +D A
Sbjct: 370 LEPDLLTLVSLASIAAQSRDYKNSRSVHGFIMRRGWLMEAVVIGNAVMDMYAKLGVIDSA 429

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGL-GIRPNASSLSSVL 179
            ++F + PVK VV+W  +ISGY      +N  A + +++ RMM     I+ N  +  S+L
Sbjct: 430 HKVFNLIPVKDVVSWNTLISGY-----TQNGLASEAIEVYRMMEECREIKLNQGTWVSIL 484

Query: 180 LGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVV 239
              +H+ +LQ G ++H  + K+ L  D    T LI +Y KCG L DA  LF ++ R+  V
Sbjct: 485 AAYAHVGALQQGMRIHGHLIKTNLHLDVFVGTCLIDLYGKCGRLVDAMCLFYQVPRESSV 544

Query: 240 TWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSM 299
            WNA+IS +  HG GEKAL+LF +M+DEG+KPD +TF++LL AC+H+GLVD G ++F  +
Sbjct: 545 PWNAIISCHGIHGHGEKALKLFREMQDEGVKPDHVTFISLLSACSHSGLVDEG-KWFFHL 603

Query: 300 VNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDL 359
           + +YGI     HY CMVDLLGRAG L  A D IK MP  P  +I+G LL ACR+H  ++L
Sbjct: 604 MQEYGIKPSLKHYGCMVDLLGRAGFLEMAYDFIKDMPLHPDASIWGALLGACRIHGNIEL 663

Query: 360 AEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVG 419
            +FA+  LF ++  N  G YV L+NIYA + KW+ V ++R   +E  + K PG+S IEV 
Sbjct: 664 GKFASDRLFEVDSENV-GYYVLLSNIYANVGKWEGVDKVRSLARERGLKKTPGWSSIEVN 722

Query: 420 TVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSE 479
             V  F +G++ HP+   I+ +L+ L  +MK  GY+PD  F L  V E+ KE +L  HSE
Sbjct: 723 RRVDIFYTGNQSHPKCKEIYAELRILTAKMKSLGYIPDYSFVLQDVEEDEKEHILTSHSE 782

Query: 480 KLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTC 539
           +LAIAFG+I  P  + IR+FKNLRVCGDCH ATK+IS I +REI+VRD+ RFHHFK+G C
Sbjct: 783 RLAIAFGIISTPPKSAIRIFKNLRVCGDCHNATKFISRITEREIVVRDSKRFHHFKNGIC 842

Query: 540 SCGDYW 545
           SCGDYW
Sbjct: 843 SCGDYW 848



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 106/428 (24%), Positives = 183/428 (42%), Gaps = 57/428 (13%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPI-KDTASWNTMISG 79
           G +  ++  FD+I + DV ++N M+S  + N     A   F+Q L + K  A + T    
Sbjct: 122 GDVSLSRGTFDQIQRKDVYTWNSMISAYVRNGHFREAIDCFYQLLLVTKFQADFYTFPPV 181

Query: 80  FVQKKNMAKARDLFLAMPEKNSVSW-----SAMISGYIECGQLDKAVELFKVAPVKSVVA 134
               + +   R +   +  K    W     +++I  Y   G +  A  LF   P + + +
Sbjct: 182 LKACQTLVDGRKIHCWV-FKLGFQWDVFVAASLIHMYSRFGFVGIARSLFDDMPFRDMGS 240

Query: 135 WTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQV 194
           W AMISG      ++N  A   L +L  M   GI  ++ +++S+L  C+ L  +     +
Sbjct: 241 WNAMISGL-----IQNGNAAQALDVLDEMRLEGINMDSVTVASILPVCAQLGDISTATLI 295

Query: 195 HQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKG 254
           H  V K  L  +      LI+MY K G+L DA K+F ++  +DVV+WN++I+ Y Q+   
Sbjct: 296 HLYVIKHGLEFELFVSNALINMYAKFGNLGDAQKVFQQMFLRDVVSWNSIIAAYEQNDDP 355

Query: 255 EKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTC 314
             A   F KM+  G++PD +T V+L                         IAA+   Y  
Sbjct: 356 VTARGFFFKMQLNGLEPDLLTLVSLA-----------------------SIAAQSRDYKN 392

Query: 315 MVDLLG---RAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLN 371
              + G   R G L+EAV             + G   +   ++ +L + + +A  +FNL 
Sbjct: 393 SRSVHGFIMRRGWLMEAV-------------VIGN--AVMDMYAKLGVID-SAHKVFNLI 436

Query: 372 PANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTV---VHEFRSG 428
           P      +  L + Y       +   +   M+E   +K+   +W+ +      V   + G
Sbjct: 437 PVKDVVSWNTLISGYTQNGLASEAIEVYRMMEECREIKLNQGTWVSILAAYAHVGALQQG 496

Query: 429 DRVHPELV 436
            R+H  L+
Sbjct: 497 MRIHGHLI 504



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 59/229 (25%), Positives = 107/229 (46%), Gaps = 8/229 (3%)

Query: 107 MISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGL 166
           +++ Y   G +  +   F     K V  W +MIS Y++ G+     A D     ++++  
Sbjct: 114 LVNLYASLGDVSLSRGTFDQIQRKDVYTWNSMISAYVRNGHFRE--AIDCF--YQLLLVT 169

Query: 167 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 226
             + +  +   VL  C  L     G+++H  VFK     D      LI MY + G +  A
Sbjct: 170 KFQADFYTFPPVLKACQTLVD---GRKIHCWVFKLGFQWDVFVAASLIHMYSRFGFVGIA 226

Query: 227 CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHA 286
             LF ++  +D+ +WNAMISG  Q+G   +AL + D+M+ EG+  DS+T  ++L  C   
Sbjct: 227 RSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGINMDSVTVASILPVCAQL 286

Query: 287 GLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335
           G +          V  +G+  +      ++++  + G L +A  + ++M
Sbjct: 287 GDISTA-TLIHLYVIKHGLEFELFVSNALINMYAKFGNLGDAQKVFQQM 334



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 56/214 (26%), Positives = 92/214 (42%), Gaps = 27/214 (12%)

Query: 190 LGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYA 249
           L K++H L+  S   +       L+++Y   GD+  +   F +IQRKDV TWN+MIS Y 
Sbjct: 91  LAKRLHALLVVSGKIQSNFISIRLVNLYASLGDVSLSRGTFDQIQRKDVYTWNSMISAYV 150

Query: 250 QHGKGEKALRLFDK-MKDEGMKPDSITFVALLLACN--------HAGLVDLGIQYFDSMV 300
           ++G   +A+  F + +     + D  TF  +L AC         H  +  LG Q+     
Sbjct: 151 RNGHFREAIDCFYQLLLVTKFQADFYTFPPVLKACQTLVDGRKIHCWVFKLGFQW----- 205

Query: 301 NDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQ---PAIFGTLLSACRVHKRL 357
            D  +AA       ++ +  R G +  A  L   MPF+      A+   L+      + L
Sbjct: 206 -DVFVAAS------LIHMYSRFGFVGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQAL 258

Query: 358 DLAEFAAMNLFNLNPANAAGCY---VQLANIYAA 388
           D+ +   +   N++    A       QL +I  A
Sbjct: 259 DVLDEMRLEGINMDSVTVASILPVCAQLGDISTA 292


>gi|359488559|ref|XP_002275581.2| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
           mitochondrial-like [Vitis vinifera]
          Length = 735

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 228/553 (41%), Positives = 339/553 (61%), Gaps = 24/553 (4%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
           +S L     + G+L+DA+ LFD+I   ++VS+  M++  + N DD   A   F+   +++
Sbjct: 190 SSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMITGYVQN-DDAHRALLLFKEFLVEE 248

Query: 70  TASWN---------TMIS-----GFVQKKNMAKARDLFLAMP--EKNSVSWSAMISGYIE 113
           + S            M+S       V +K++ +    FL     E +    + ++  Y +
Sbjct: 249 SGSEGDGEVCVDPIAMVSVLSACSRVSEKSITEGVHGFLIKRGFEGDLGVENTLMDAYAK 308

Query: 114 CGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLG-IRPNA 172
           CG+L  +  +F     + V++W ++I+ Y      +N  + + +++   M+  G I  NA
Sbjct: 309 CGELGVSRRVFDGMAERDVISWNSIIAVY-----AQNGMSTESMEIFHRMVKDGEINYNA 363

Query: 173 SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLE 232
            +LS+VLL C+H  S +LGK +H  V K  L  +    T +I MYCKCG +E A K F  
Sbjct: 364 VTLSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDR 423

Query: 233 IQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 292
           ++ K+V +W+AM++GY  HG  ++AL +F +M   G+KP+ ITFV++L AC+HAGL++ G
Sbjct: 424 MREKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAGLLEEG 483

Query: 293 IQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACR 352
             +F +M +++ +    +HY CMVDLLGRAG L EA DLIK M  +P   ++G LL ACR
Sbjct: 484 WHWFKAMSHEFDVEPGVEHYGCMVDLLGRAGYLKEAFDLIKGMKLRPDFVVWGALLGACR 543

Query: 353 VHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPG 412
           +HK +DL E +A  LF L+P N  G YV L+NIYA   +W+DV R+R+ MK + +VK PG
Sbjct: 544 MHKNVDLGEISARKLFELDPKN-CGYYVLLSNIYADAGRWEDVERMRILMKNSGLVKPPG 602

Query: 413 YSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQ 472
           +S +++   VH F  GDR HP+   I+E L++L  +++  GYVPD+   LH VG E KE 
Sbjct: 603 FSLVDIKGRVHVFLVGDREHPQHEKIYEYLEKLSMKLQEVGYVPDMTSVLHDVGHEEKEM 662

Query: 473 LLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFH 532
           +L  HSEKLA+AFG++    GT I + KNLRVCGDCH A K+IS I  REI+VRD+ RFH
Sbjct: 663 VLRVHSEKLAVAFGIMNTVPGTTIHIIKNLRVCGDCHTAIKFISKIVDREIVVRDSKRFH 722

Query: 533 HFKDGTCSCGDYW 545
           HF+DG CSCGDYW
Sbjct: 723 HFRDGLCSCGDYW 735



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 83/162 (51%), Gaps = 13/162 (8%)

Query: 131 SVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQL 190
           +V +W ++I+   + G      + + L+    M  L ++PN S+    +  CS L  L  
Sbjct: 116 NVFSWNSVIAELARSGD-----SVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALLDLHS 170

Query: 191 GKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQ 250
           G+Q HQ         D    + L+ MY KCG+L DA  LF EI  +++V+W +MI+GY Q
Sbjct: 171 GRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMITGYVQ 230

Query: 251 HGKGEKALRLFDK--MKDEGMKPDS------ITFVALLLACN 284
           +    +AL LF +  +++ G + D       I  V++L AC+
Sbjct: 231 NDDAHRALLLFKEFLVEESGSEGDGEVCVDPIAMVSVLSACS 272



 Score = 43.5 bits (101), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 59/110 (53%), Gaps = 9/110 (8%)

Query: 233 IQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDL- 291
           + + +V +WN++I+  A+ G   +ALR F  M+   +KP+  TF   + +C  + L+DL 
Sbjct: 112 VDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSC--SALLDLH 169

Query: 292 -GIQYFDSMVNDYGIAAKPDHY--TCMVDLLGRAGKLVEAVDLIKKMPFK 338
            G Q     +  +G   +PD +  + +VD+  + G+L +A  L  ++  +
Sbjct: 170 SGRQAHQQAL-IFGF--EPDLFVSSALVDMYSKCGELRDARTLFDEISHR 216


>gi|242032827|ref|XP_002463808.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
 gi|241917662|gb|EER90806.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
          Length = 803

 Score =  432 bits (1112), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 226/557 (40%), Positives = 340/557 (61%), Gaps = 20/557 (3%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKI-----PQPDVVSYNIMLSCI----LLN 51
           M  ++ V+WN+++AG+  Q G    A + F ++      +PD  +   +LS      +L 
Sbjct: 255 MEERSIVSWNAIIAGY-NQNGLDDMALKFFSRMLTASSMEPDEFTVTSVLSACANLRMLK 313

Query: 52  SDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLF--LAMPEKNSVSWSAMIS 109
               + ++     +P       N +IS + +  ++  AR +     + + N +S++A++ 
Sbjct: 314 MGKQMHSYILRTGMPYSSQIM-NALISTYAKSGSVETARRIMDKAVVADLNVISFTALLE 372

Query: 110 GYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIR 169
           GY++ G   +A E+F V   + V+AWTAMI      GY +N   ++ ++L R MI  G  
Sbjct: 373 GYVKLGDTKQAREVFDVMNNRDVIAWTAMI-----VGYEQNGQNDEAMELFRSMIRSGPE 427

Query: 170 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 229
           PN+ +L++VL  C+ L+ L  GKQ+H    +S   +  +    +I++Y + G +  A ++
Sbjct: 428 PNSHTLAAVLSACASLAYLGYGKQIHCRAIRSLQEQSVSVSNAIITVYARSGSVPLARRV 487

Query: 230 FLEI-QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGL 288
           F +I  RK+ VTW +MI   AQHG GE+A+ LF++M   G+KPD +T++ +  AC HAG 
Sbjct: 488 FDQICWRKETVTWTSMIVALAQHGLGEQAIVLFEEMLRVGVKPDRVTYIGVFSACTHAGF 547

Query: 289 VDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLL 348
           +D G +Y++ M+N++GI  +  HY CMVDLL RAG L EA + I++MP  P   ++G+LL
Sbjct: 548 IDKGKRYYEQMLNEHGIVPEMSHYACMVDLLARAGLLTEAHEFIQRMPVAPDTVVWGSLL 607

Query: 349 SACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVV 408
           +ACRV K  DLAE AA  L +++P N+ G Y  LAN+Y+A  +W+D ARI    K+  V 
Sbjct: 608 AACRVRKNADLAELAAEKLLSIDPDNS-GAYSALANVYSACGRWNDAARIWKLRKDKAVK 666

Query: 409 KMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEE 468
           K  G+SW  V + VH F + D +HP+  +I +K  E+ + +K AG+VPDL   LH V +E
Sbjct: 667 KETGFSWTHVQSKVHVFGADDVLHPQRDAICKKAAEMWEEIKKAGFVPDLNSVLHDVDDE 726

Query: 469 VKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDT 528
           +KE+LL  HSEKLAIAFGLI  P  T +R+ KNLRVC DCH A K+IS +  REIIVRD 
Sbjct: 727 LKEELLSRHSEKLAIAFGLISTPEKTTLRIMKNLRVCNDCHTAIKFISKVVDREIIVRDA 786

Query: 529 TRFHHFKDGTCSCGDYW 545
           TRFHHF+DG CSC DYW
Sbjct: 787 TRFHHFRDGYCSCKDYW 803



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 77/271 (28%), Positives = 138/271 (50%), Gaps = 22/271 (8%)

Query: 88  KARDLFLAMP--EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKF 145
           +AR LF  +P   +N+ +W++++S Y + G+L  A  +F   P +  V+WT M+ G  + 
Sbjct: 82  EARRLFDDIPYARRNAFTWNSLLSMYAKSGRLADARVVFAQMPERDAVSWTVMVVGLNRA 141

Query: 146 GYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCK 205
           G     W  D +K    M+G G+ P+   L++VL  C+   +  +G++VH  V K  L  
Sbjct: 142 GRF---W--DAVKTFLDMVGEGLAPSQFMLTNVLSSCAATEARGIGRKVHSFVIKLGLSS 196

Query: 206 DTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMK 265
                  ++ MY KCGD E A  +F  ++ +   +WNAM+S Y   G+ + AL +F+ M+
Sbjct: 197 CVPVANSVLYMYGKCGDAETARAVFERMKVRSESSWNAMVSLYTHQGRMDLALSMFENME 256

Query: 266 DEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYT-------CMVDL 318
           +  +    +++ A++   N  GL D+ +++F  M+    +  +PD +T       C    
Sbjct: 257 ERSI----VSWNAIIAGYNQNGLDDMALKFFSRMLTASSM--EPDEFTVTSVLSACANLR 310

Query: 319 LGRAGKLVEAVDLIKKMPFKPQPAIFGTLLS 349
           + + GK + +  L   MP+  Q  I   L+S
Sbjct: 311 MLKMGKQMHSYILRTGMPYSSQ--IMNALIS 339



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 71/274 (25%), Positives = 120/274 (43%), Gaps = 68/274 (24%)

Query: 54  DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE 113
           D   A   F+R+ ++  +SWN M+S +  +  M  A  +F  M E++ VSW+A+I+GY +
Sbjct: 213 DAETARAVFERMKVRSESSWNAMVSLYTHQGRMDLALSMFENMEERSIVSWNAIIAGYNQ 272

Query: 114 CGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNAS 173
            G  D A++ F                                    RM+    + P+  
Sbjct: 273 NGLDDMALKFFS-----------------------------------RMLTASSMEPDEF 297

Query: 174 SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL---- 229
           +++SVL  C++L  L++GKQ+H  + ++ +   +  +  LIS Y K G +E A ++    
Sbjct: 298 TVTSVLSACANLRMLKMGKQMHSYILRTGMPYSSQIMNALISTYAKSGSVETARRIMDKA 357

Query: 230 -----------------------------FLEIQRKDVVTWNAMISGYAQHGKGEKALRL 260
                                        F  +  +DV+ W AMI GY Q+G+ ++A+ L
Sbjct: 358 VVADLNVISFTALLEGYVKLGDTKQAREVFDVMNNRDVIAWTAMIVGYEQNGQNDEAMEL 417

Query: 261 FDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ 294
           F  M   G +P+S T  A+L AC     +  G Q
Sbjct: 418 FRSMIRSGPEPNSHTLAAVLSACASLAYLGYGKQ 451


>gi|302800114|ref|XP_002981815.1| hypothetical protein SELMODRAFT_114918 [Selaginella moellendorffii]
 gi|300150647|gb|EFJ17297.1| hypothetical protein SELMODRAFT_114918 [Selaginella moellendorffii]
          Length = 637

 Score =  432 bits (1112), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 227/535 (42%), Positives = 333/535 (62%), Gaps = 17/535 (3%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWN-TMISG 79
           G   DA  +F ++   DVV+++ M++    N      A   F+++ +   A    T++SG
Sbjct: 110 GHCTDAASVFLRMSHRDVVAWSAMVAAYARNGHPR-EALGLFRQMDLDGVAPNKVTLVSG 168

Query: 80  FVQKKNMAKARDLFLAMP-------EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSV 132
                ++   R   L          +   V  +A+++ Y +CG+++ AVE F     K+V
Sbjct: 169 LDACASLGDLRSGALMHQRVEAQGIQSGVVVGTALVNLYGKCGRIEAAVEAFGQIVEKNV 228

Query: 133 VAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGK 192
           VAW+A+ + Y +     N    D +++L  M   G+ PN+++  SVL  C+ +++L+ G+
Sbjct: 229 VAWSAISAAYAR-----NDRNRDAIRVLHRMDLEGLVPNSTTFVSVLDACAAIAALKQGR 283

Query: 193 QVHQL--VFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQ 250
           ++H+   V    L  D   LT L++MY KCG+L  A  +F +I   D+V WN++I+  AQ
Sbjct: 284 RIHERTQVLGGGLESDVYVLTALVNMYSKCGNLALAGDMFDKIAHLDLVLWNSLIATNAQ 343

Query: 251 HGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPD 310
           HG+ EKAL LF++M+ EG++P  ITF ++L AC+HAG++D G ++F S + D+GI  + +
Sbjct: 344 HGQTEKALELFERMRLEGLQPTIITFTSVLFACSHAGMLDQGRKHFVSFIGDHGIFPEAE 403

Query: 311 HYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNL 370
           H+ CMVDLLGRAG +V++ DL+  MPF+P P  +   L ACR ++ +D A +AA NLF L
Sbjct: 404 HFGCMVDLLGRAGWIVDSEDLLLHMPFEPHPVAWMAFLGACRTYRNMDRAIWAAENLFQL 463

Query: 371 NPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDR 430
           +P   A  YV L+N+YA   +W DVAR+R +M+    VK  G SWIEV   VHEF SGD 
Sbjct: 464 DPRKRAP-YVLLSNMYAKAGRWSDVARMRQAMQLFMTVKEAGRSWIEVKDRVHEFISGDL 522

Query: 431 VHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKV 490
            HP +  IH +L+ L K MK AGYVPD E  LH V +EVKE ++ +HSEKLA+AF L+  
Sbjct: 523 DHPRIGEIHAELQRLTKLMKEAGYVPDTEMVLHDVKQEVKEIMVGYHSEKLAMAFALLTT 582

Query: 491 PLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           P G+PIRV KNLRVC DCH A+K+IS +  REI+VRD  RFH F++G CSCGDYW
Sbjct: 583 PEGSPIRVVKNLRVCNDCHTASKFISKLVNREIVVRDCNRFHRFQNGACSCGDYW 637



 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 106/387 (27%), Positives = 186/387 (48%), Gaps = 26/387 (6%)

Query: 18  KQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD----FFQRLPIKDTASW 73
            Q G +   ++ FD++P  D+VS+N +++  + N D     FD    FF+ + ++     
Sbjct: 6   SQIGNIPAVRKAFDEMPVADIVSWNALIAAYIGNRD-----FDRCWLFFRGMLLQGINPG 60

Query: 74  NTMISGFVQK----KNMAKARDLFLAM----PEKNSVSWSAMISGYIECGQLDKAVELFK 125
              IS F+      + +   R + LA+     E+ S+  +A++S Y + G    A  +F 
Sbjct: 61  EVGISIFLSACTDAREITIGRSIQLAILGTGIEEESIVQTALVSMYGKLGHCTDAASVFL 120

Query: 126 VAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHL 185
               + VVAW+AM++ Y + G+       + L L R M   G+ PN  +L S L  C+ L
Sbjct: 121 RMSHRDVVAWSAMVAAYARNGH-----PREALGLFRQMDLDGVAPNKVTLVSGLDACASL 175

Query: 186 SSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMI 245
             L+ G  +HQ V    +       T L+++Y KCG +E A + F +I  K+VV W+A+ 
Sbjct: 176 GDLRSGALMHQRVEAQGIQSGVVVGTALVNLYGKCGRIEAAVEAFGQIVEKNVVAWSAIS 235

Query: 246 SGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFD-SMVNDYG 304
           + YA++ +   A+R+  +M  EG+ P+S TFV++L AC     +  G +  + + V   G
Sbjct: 236 AAYARNDRNRDAIRVLHRMDLEGLVPNSTTFVSVLDACAAIAALKQGRRIHERTQVLGGG 295

Query: 305 IAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLD--LAEF 362
           + +     T +V++  + G L  A D+  K+       ++ +L++    H + +  L  F
Sbjct: 296 LESDVYVLTALVNMYSKCGNLALAGDMFDKIA-HLDLVLWNSLIATNAQHGQTEKALELF 354

Query: 363 AAMNLFNLNPANAAGCYVQLANIYAAM 389
             M L  L P       V  A  +A M
Sbjct: 355 ERMRLEGLQPTIITFTSVLFACSHAGM 381



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 66/229 (28%), Positives = 115/229 (50%), Gaps = 6/229 (2%)

Query: 107 MISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGL 166
           M+S Y + G +    + F   PV  +V+W A+I+ Y+     +  W        R M+  
Sbjct: 1   MLSAYSQIGNIPAVRKAFDEMPVADIVSWNALIAAYIGNRDFDRCWL-----FFRGMLLQ 55

Query: 167 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 226
           GI P    +S  L  C+    + +G+ +   +  + + +++   T L+SMY K G   DA
Sbjct: 56  GINPGEVGISIFLSACTDAREITIGRSIQLAILGTGIEEESIVQTALVSMYGKLGHCTDA 115

Query: 227 CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHA 286
             +FL +  +DVV W+AM++ YA++G   +AL LF +M  +G+ P+ +T V+ L AC   
Sbjct: 116 ASVFLRMSHRDVVAWSAMVAAYARNGHPREALGLFRQMDLDGVAPNKVTLVSGLDACASL 175

Query: 287 GLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335
           G +  G       V   GI +     T +V+L G+ G++  AV+   ++
Sbjct: 176 GDLRSG-ALMHQRVEAQGIQSGVVVGTALVNLYGKCGRIEAAVEAFGQI 223


>gi|302758830|ref|XP_002962838.1| hypothetical protein SELMODRAFT_79052 [Selaginella moellendorffii]
 gi|300169699|gb|EFJ36301.1| hypothetical protein SELMODRAFT_79052 [Selaginella moellendorffii]
          Length = 652

 Score =  432 bits (1112), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 227/546 (41%), Positives = 335/546 (61%), Gaps = 17/546 (3%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
            + L     + G   DA  +F ++   DVV+++ M++    N      A   F+++ +  
Sbjct: 114 QTALVSLYGKLGHCTDAASVFLRMSHRDVVAWSAMVAAYARNGHPR-EALGLFRQMDLDG 172

Query: 70  TASWN-TMISGFVQKKNMAKARDLFLAMP-------EKNSVSWSAMISGYIECGQLDKAV 121
            A    T++SG     ++   R   L          +   V  +A+++ Y +CG+++ A 
Sbjct: 173 VAPNKVTLVSGLDACASLGDLRSGALMHQRVEAQGIQSGVVVGTALVNLYGKCGRIEAAA 232

Query: 122 ELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLG 181
           E F     K+VVAW+A+ + Y +     N    D +++L  M   G+ PN+++  SVL  
Sbjct: 233 EAFGQIVEKNVVAWSAISAAYAR-----NDRNRDAIRVLHRMDLEGLAPNSTTFVSVLDA 287

Query: 182 CSHLSSLQLGKQVHQL--VFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVV 239
           C+ +++L+ G+++H+   V    L  D   LT L++MY KCG+L  A  +F +I   D+V
Sbjct: 288 CAAIAALKQGRRIHERIHVLGGGLESDVYVLTALVNMYSKCGNLALAGNMFDKIAHLDLV 347

Query: 240 TWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSM 299
            WN++I+  AQHG+ EKAL LF++M+ EG++P  ITF ++L AC+HAG++D G ++F S 
Sbjct: 348 LWNSLIATNAQHGQTEKALELFERMRLEGLQPTIITFTSVLFACSHAGMLDQGRKHFVSF 407

Query: 300 VNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDL 359
           + D+GI  + +H+ CMVDLLGRAG +V++ DL+  MPF+P P  +   L ACR ++ +D 
Sbjct: 408 IGDHGIFPEAEHFGCMVDLLGRAGWIVDSEDLLLHMPFEPHPVAWMAFLGACRTYRNMDG 467

Query: 360 AEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVG 419
           A +AA NLF L+P   A  YV L+N+YA   +W DVAR+R +M+    VK  G SWIEV 
Sbjct: 468 AIWAAENLFQLDPRKRAP-YVLLSNMYAKAGRWSDVARMRQAMQLFMTVKEAGRSWIEVK 526

Query: 420 TVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSE 479
             VHEF SGD  HP +  IH +L+ L K MK AGYVPD E  LH V +EVKE ++ +HSE
Sbjct: 527 DRVHEFISGDLDHPRIGEIHAELQRLTKLMKAAGYVPDTEMVLHDVKQEVKETMVGYHSE 586

Query: 480 KLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTC 539
           KLA+AF L+  P G+PIRV KNLRVC DCH A+K+IS +  REI+VRD  RFH F++G C
Sbjct: 587 KLAMAFALLTTPEGSPIRVVKNLRVCNDCHTASKFISKLVNREIVVRDCNRFHRFQNGAC 646

Query: 540 SCGDYW 545
           SCGDYW
Sbjct: 647 SCGDYW 652



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 105/384 (27%), Positives = 180/384 (46%), Gaps = 28/384 (7%)

Query: 22  KLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD----FFQRLPIKDTASWNTMI 77
           +  DA  +F  I   +V S+ +ML+    N D     FD    FF+ + ++        I
Sbjct: 25  RFDDALAVFHGIQSKNVFSWTMMLAAFAENRD-----FDRCWLFFRGMLLQGINPGEVGI 79

Query: 78  SGFVQK----KNMAKARDLFLAM----PEKNSVSWSAMISGYIECGQLDKAVELFKVAPV 129
           S F+      + +   R + LA+     E+ S+  +A++S Y + G    A  +F     
Sbjct: 80  SIFLSACTDAREITIGRSIQLAILGTGIEEESIVQTALVSLYGKLGHCTDAASVFLRMSH 139

Query: 130 KSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQ 189
           + VVAW+AM++ Y + G+       + L L R M   G+ PN  +L S L  C+ L  L+
Sbjct: 140 RDVVAWSAMVAAYARNGH-----PREALGLFRQMDLDGVAPNKVTLVSGLDACASLGDLR 194

Query: 190 LGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYA 249
            G  +HQ V    +       T L+++Y KCG +E A + F +I  K+VV W+A+ + YA
Sbjct: 195 SGALMHQRVEAQGIQSGVVVGTALVNLYGKCGRIEAAAEAFGQIVEKNVVAWSAISAAYA 254

Query: 250 QHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKP 309
           ++ +   A+R+  +M  EG+ P+S TFV++L AC     +  G +     ++  G   + 
Sbjct: 255 RNDRNRDAIRVLHRMDLEGLAPNSTTFVSVLDACAAIAALKQG-RRIHERIHVLGGGLES 313

Query: 310 DHY--TCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLD--LAEFAAM 365
           D Y  T +V++  + G L  A ++  K+       ++ +L++    H + +  L  F  M
Sbjct: 314 DVYVLTALVNMYSKCGNLALAGNMFDKIA-HLDLVLWNSLIATNAQHGQTEKALELFERM 372

Query: 366 NLFNLNPANAAGCYVQLANIYAAM 389
            L  L P       V  A  +A M
Sbjct: 373 RLEGLQPTIITFTSVLFACSHAGM 396



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 64/237 (27%), Positives = 118/237 (49%), Gaps = 6/237 (2%)

Query: 99  KNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLK 158
           +N    + +I  Y +C + D A+ +F     K+V +WT M++ + +    +  W      
Sbjct: 8   RNRFLCNLLIDLYTKCDRFDDALAVFHGIQSKNVFSWTMMLAAFAENRDFDRCWL----- 62

Query: 159 LLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYC 218
             R M+  GI P    +S  L  C+    + +G+ +   +  + + +++   T L+S+Y 
Sbjct: 63  FFRGMLLQGINPGEVGISIFLSACTDAREITIGRSIQLAILGTGIEEESIVQTALVSLYG 122

Query: 219 KCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVA 278
           K G   DA  +FL +  +DVV W+AM++ YA++G   +AL LF +M  +G+ P+ +T V+
Sbjct: 123 KLGHCTDAASVFLRMSHRDVVAWSAMVAAYARNGHPREALGLFRQMDLDGVAPNKVTLVS 182

Query: 279 LLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335
            L AC   G +  G       V   GI +     T +V+L G+ G++  A +   ++
Sbjct: 183 GLDACASLGDLRSG-ALMHQRVEAQGIQSGVVVGTALVNLYGKCGRIEAAAEAFGQI 238


>gi|356564895|ref|XP_003550682.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Glycine max]
          Length = 778

 Score =  432 bits (1112), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 236/545 (43%), Positives = 325/545 (59%), Gaps = 18/545 (3%)

Query: 12  VLAGFAKQRGKLKD---AQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK 68
           VL G      K +D   A+ LF  I +PD+VSYN ++S    N +   A   F + L   
Sbjct: 241 VLTGLISVFSKCEDVDTARLLFGMIRKPDLVSYNALISGFSCNGETECAVKYFRELLVSG 300

Query: 69  DTASWNTMIS--------GFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
              S +TM+         G +      +   +      + SVS +A+ + Y    ++D A
Sbjct: 301 QRVSSSTMVGLIPVSSPFGHLHLACCIQGFCVKSGTILQPSVS-TALTTIYSRLNEIDLA 359

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLL 180
            +LF  +  K+V AW AMISGY + G  E +     + L + M+     PN  +++S+L 
Sbjct: 360 RQLFDESSEKTVAAWNAMISGYAQSGLTEMA-----ISLFQEMMTTEFTPNPVTITSILS 414

Query: 181 GCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVT 240
            C+ L +L  GK VHQL+    L ++    T LI MY KCG++ +A +LF     K+ VT
Sbjct: 415 ACAQLGALSFGKSVHQLIKSKNLEQNIYVSTALIDMYAKCGNISEASQLFDLTSEKNTVT 474

Query: 241 WNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV 300
           WN MI GY  HG G++AL+LF++M   G +P S+TF+++L AC+HAGLV  G + F +MV
Sbjct: 475 WNTMIFGYGLHGYGDEALKLFNEMLHLGFQPSSVTFLSVLYACSHAGLVREGDEIFHAMV 534

Query: 301 NDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLA 360
           N Y I    +HY CMVD+LGRAG+L +A++ I+KMP +P PA++GTLL AC +HK  +LA
Sbjct: 535 NKYRIEPLAEHYACMVDILGRAGQLEKALEFIRKMPVEPGPAVWGTLLGACMIHKDTNLA 594

Query: 361 EFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGT 420
             A+  LF L+P N  G YV L+NIY+  + +   A +R ++K+ N+ K PG + IEV  
Sbjct: 595 RVASERLFELDPGN-VGYYVLLSNIYSVERNFPKAASVREAVKKRNLSKTPGCTLIEVNG 653

Query: 421 VVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEK 480
             H F  GDR H +  SI+ KL+EL  +M+  GY  +   ALH V EE KE +   HSEK
Sbjct: 654 TPHVFVCGDRSHSQTTSIYAKLEELTGKMREMGYQSETVTALHDVEEEEKELMFNVHSEK 713

Query: 481 LAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCS 540
           LAIAFGLI    GT IR+ KNLRVC DCH ATK+IS I +R I+VRD  RFHHFKDG CS
Sbjct: 714 LAIAFGLITTEPGTEIRIIKNLRVCLDCHAATKFISKITERVIVVRDANRFHHFKDGICS 773

Query: 541 CGDYW 545
           CGDYW
Sbjct: 774 CGDYW 778



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 92/379 (24%), Positives = 172/379 (45%), Gaps = 64/379 (16%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G  + A+ LF  +P+PD+  +N+++     + D   ++  F+  L    T S +     F
Sbjct: 54  GATRHARALFFSVPKPDIFLFNVLIKGFSFSPD--ASSISFYTHLLKNTTLSPDNFTYAF 111

Query: 81  VQKKNMAKARDLFLAMP----------EKNSVSWSAMISGYIECGQLDKAVELFKVAPVK 130
                ++ + D  L M           + N    SA++  Y +  ++  A ++F   P +
Sbjct: 112 A----ISASPDDNLGMCLHAHAVVDGFDSNLFVASALVDLYCKFSRVAYARKVFDKMPDR 167

Query: 131 SVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQL 190
             V W  MI+G      V N   +D +++ + M+  G+R +++++++VL   + +  +++
Sbjct: 168 DTVLWNTMITGL-----VRNCCYDDSVQVFKDMVAQGVRLDSTTVATVLPAVAEMQEVKV 222

Query: 191 GKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQ 250
           G  +  L  K     D   LT LIS++ KC D++ A  LF  I++ D+V++NA+ISG++ 
Sbjct: 223 GMGIQCLALKLGFHFDDYVLTGLISVFSKCEDVDTARLLFGMIRKPDLVSYNALISGFSC 282

Query: 251 HGKGEKALRLFDKMKDEGMKPDSITFVALL----------LACNHAGL------------ 288
           +G+ E A++ F ++   G +  S T V L+          LAC   G             
Sbjct: 283 NGETECAVKYFRELLVSGQRVSSSTMVGLIPVSSPFGHLHLACCIQGFCVKSGTILQPSV 342

Query: 289 -------------VDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335
                        +DL  Q FD   ++  +AA    +  M+    ++G    A+ L ++M
Sbjct: 343 STALTTIYSRLNEIDLARQLFDES-SEKTVAA----WNAMISGYAQSGLTEMAISLFQEM 397

Query: 336 ---PFKPQPAIFGTLLSAC 351
               F P P    ++LSAC
Sbjct: 398 MTTEFTPNPVTITSILSAC 416



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 65/243 (26%), Positives = 110/243 (45%), Gaps = 53/243 (21%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKI------PQPDVVSYNIMLSCILLNSDDVVA 57
           KT   WN++++G+A Q G  + A  LF ++      P P  ++ +I+ +C  L +     
Sbjct: 369 KTVAAWNAMISGYA-QSGLTEMAISLFQEMMTTEFTPNPVTIT-SILSACAQLGA----- 421

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQL 117
                         S+   +   ++ KN+           E+N    +A+I  Y +CG +
Sbjct: 422 -------------LSFGKSVHQLIKSKNL-----------EQNIYVSTALIDMYAKCGNI 457

Query: 118 DKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSS 177
            +A +LF +   K+ V W  MI GY   GY      ++ LKL   M+ LG +P++ +  S
Sbjct: 458 SEASQLFDLTSEKNTVTWNTMIFGYGLHGY-----GDEALKLFNEMLHLGFQPSSVTFLS 512

Query: 178 VLLGCSHLSSLQLGKQV-HQLVFK---SPLCKDTTALTPLISMYCKCGDLEDACKLFLEI 233
           VL  CSH   ++ G ++ H +V K    PL +    +  ++    + G LE A    LE 
Sbjct: 513 VLYACSHAGLVREGDEIFHAMVNKYRIEPLAEHYACMVDILG---RAGQLEKA----LEF 565

Query: 234 QRK 236
            RK
Sbjct: 566 IRK 568


>gi|225461979|ref|XP_002267354.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 632

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 233/552 (42%), Positives = 328/552 (59%), Gaps = 24/552 (4%)

Query: 6   TVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCIL---LNSDD-------- 54
           T  WNS L   A+    + DA  LF ++ Q DV       S +L   LN  D        
Sbjct: 93  TFVWNSCLKALAEGDSPI-DAIMLFYRLRQYDVCPDTFTCSSVLRACLNLLDLSNGRILH 151

Query: 55  -VVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE 113
            VV    F   L ++     N ++  +     M +AR LF  MP+++ V+W+ MI+  I+
Sbjct: 152 GVVEKVGFRSNLYLQ-----NMIVHLYASCGEMGEARLLFEKMPQRDVVTWNIMIAQLIK 206

Query: 114 CGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNAS 173
            G  + A +LF   P ++V +WT+MI+GY++ G      A++ + L   M   G++ N  
Sbjct: 207 QGDHEGAYDLFSRMPERNVRSWTSMIAGYVQCGK-----AKEAIHLFAKMEEAGVKCNEV 261

Query: 174 SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI 233
           ++ +VL  C+ L +L LG ++H+   +    ++      LI MY KCG LE+ACK+F E+
Sbjct: 262 TVVAVLAACADLGALDLGMRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEM 321

Query: 234 QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGI 293
           + + VV+W+AMI G A HG+ E+ALRLF  M   G++P+ +TF+ LL AC+H GL+  G 
Sbjct: 322 EERTVVSWSAMIGGLAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGR 381

Query: 294 QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRV 353
           ++F SM  DYGI  + +HY CMVDLL RAG L EA + I  MP KP   ++G LL ACRV
Sbjct: 382 RFFASMTRDYGIIPQIEHYGCMVDLLSRAGLLHEAHEFILNMPMKPNGVVWGALLGACRV 441

Query: 354 HKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGY 413
           HK +++AE A  +L  L+P N  G YV L+NIYA   +W+D AR+R  MK+  V K PG+
Sbjct: 442 HKNVEMAEEAIKHLLELDPLN-DGYYVVLSNIYAEAGRWEDTARVRKFMKDRQVKKTPGW 500

Query: 414 SWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQL 473
           S I V  VVHEF +G+  HP+   I ++ +EL + M+L GYVP+    L  + E  K + 
Sbjct: 501 SSITVDGVVHEFVAGEESHPDTEQIFQRWEELLEEMRLKGYVPNTSVVLLDIEEGEKVKF 560

Query: 474 LLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHH 533
           +  HSEKLA+ FGL+  P  TPIR+ KNLR+C DCH A K ISAI  REI+VRD  RFH 
Sbjct: 561 VSRHSEKLALVFGLMNTPAETPIRIMKNLRICEDCHSAFKLISAIVNREIVVRDRNRFHC 620

Query: 534 FKDGTCSCGDYW 545
           F D +CSC DYW
Sbjct: 621 FNDNSCSCRDYW 632



 Score = 42.4 bits (98), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 80/177 (45%), Gaps = 16/177 (9%)

Query: 168 IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKS--PLCKDTTALTPLISMYCKCG---D 222
           ++P +S    + L  +  S  +L +QVH  + K+  PL     ++ PL  +   C     
Sbjct: 22  VKPQSSETLKIDLLRNFNSPFEL-RQVHAQIIKTNAPL-----SILPLTRVGLVCAFTPS 75

Query: 223 LEDACKLF--LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 280
              A ++F  +E Q+ +   WN+ +   A+      A+ LF +++   + PD+ T  ++L
Sbjct: 76  FHYAQQIFKCVEKQKPETFVWNSCLKALAEGDSPIDAIMLFYRLRQYDVCPDTFTCSSVL 135

Query: 281 LACNHAGLVDLGI-QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 336
            AC    L+DL   +    +V   G  +       +V L    G++ EA  L +KMP
Sbjct: 136 RAC--LNLLDLSNGRILHGVVEKVGFRSNLYLQNMIVHLYASCGEMGEARLLFEKMP 190


>gi|449435966|ref|XP_004135765.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 666

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 222/525 (42%), Positives = 314/525 (59%), Gaps = 39/525 (7%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G+L+DA+++F    + DVV +N M+    L    + AA   F ++P+K+  SWN MI+G 
Sbjct: 181 GRLEDARKMFYS-GESDVVCWNTMIDG-YLKCGVLEAAKGLFAQMPVKNIGSWNVMINGL 238

Query: 81  VQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMIS 140
            +  N+  AR LF  M E++ +SWS+M+ GYI  G+  +A+E+F+    +          
Sbjct: 239 AKGGNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQMQREET-------- 290

Query: 141 GYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK 200
                                       RP    LSSVL  CS++ ++  G+ VH  + +
Sbjct: 291 ----------------------------RPGRFILSSVLAACSNIGAIDQGRWVHAYLKR 322

Query: 201 SPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRL 260
           + +  D    T L+ MY KCG L+   ++F E++ +++ TWNAMI G A HG+ E AL L
Sbjct: 323 NSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDALEL 382

Query: 261 FDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLG 320
           F K+++  MKP+ IT V +L AC HAG VD G++ F +M   YG+  + +HY CMVDLLG
Sbjct: 383 FSKLQEGRMKPNGITLVGVLTACAHAGFVDKGLRIFQTMREFYGVDPELEHYGCMVDLLG 442

Query: 321 RAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYV 380
           R+G   EA DLI  MP KP  A++G LL ACR+H   DLAE     L  L P N +G YV
Sbjct: 443 RSGLFSEAEDLINSMPMKPNAAVWGALLGACRIHGNFDLAERVGKILLELEPQN-SGRYV 501

Query: 381 QLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHE 440
            L+NIYA + ++DDV++IR  MK+  +  +PG S +++   VHEF+ GD  HP++  I+ 
Sbjct: 502 LLSNIYAKVGRFDDVSKIRKLMKDRGIKTVPGVSIVDLNGTVHEFKMGDGSHPQMKEIYR 561

Query: 441 KLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFK 500
           KLK +++R+++AG+ PD    L  + EE KE  + +HSEKLAIAFGLI    G  I + K
Sbjct: 562 KLKIIKERLQMAGHSPDTSQVLFDIDEEEKETAVNYHSEKLAIAFGLINTLPGKRIHIVK 621

Query: 501 NLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           NLRVC DCH ATK IS I  REIIVRD  R+HHFK+GTCSC D+W
Sbjct: 622 NLRVCDDCHSATKLISQIFDREIIVRDRVRYHHFKNGTCSCKDFW 666



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 83/362 (22%), Positives = 149/362 (41%), Gaps = 64/362 (17%)

Query: 6   TVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRL 65
            V WN+++ G+ K  G L+ A+ LF ++P  ++ S+N+M++  L    ++  A   F  +
Sbjct: 197 VVCWNTMIDGYLKC-GVLEAAKGLFAQMPVKNIGSWNVMING-LAKGGNLGDARKLFDEM 254

Query: 66  PIKDTASWNTMISGFVQKKNMAKARDLFLAMP---------------------------- 97
             +D  SW++M+ G++      +A ++F  M                             
Sbjct: 255 SERDEISWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVLAACSNIGAIDQGR 314

Query: 98  ------EKNSVSW-----SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFG 146
                 ++NS+       +A++  Y +CG+LD   E+F+    + +  W AMI G    G
Sbjct: 315 WVHAYLKRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHG 374

Query: 147 YVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKD 206
                 AED L+L   +    ++PN  +L  VL  C+H   +  G ++ Q +      ++
Sbjct: 375 R-----AEDALELFSKLQEGRMKPNGITLVGVLTACAHAGFVDKGLRIFQTM------RE 423

Query: 207 TTALTPLISMYCKCGDLEDACKLFLEIQ--------RKDVVTWNAMISGYAQHGKGEKAL 258
              + P +  Y    DL     LF E +        + +   W A++     HG  + A 
Sbjct: 424 FYGVDPELEHYGCMVDLLGRSGLFSEAEDLINSMPMKPNAAVWGALLGACRIHGNFDLAE 483

Query: 259 RLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDL 318
           R+  K+  E    +S  +V L       G  D  +     ++ D GI   P     +VDL
Sbjct: 484 RV-GKILLELEPQNSGRYVLLSNIYAKVGRFD-DVSKIRKLMKDRGIKTVPG--VSIVDL 539

Query: 319 LG 320
            G
Sbjct: 540 NG 541



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 78/295 (26%), Positives = 126/295 (42%), Gaps = 19/295 (6%)

Query: 116 QLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSL 175
             D A+++F   P  +V  W  +I G +     EN+     +     M+ +  RPN  + 
Sbjct: 82  NFDFALKVFSSIPNPNVFIWNIVIKGCL-----ENNKLFKAIYFYGRMV-IDARPNKFTY 135

Query: 176 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR 235
            ++   CS   ++Q G+Q+H  V K  +  D    +  I MY   G LEDA K+F   + 
Sbjct: 136 PTLFKACSVAQAVQEGRQIHGHVVKHGIGSDVHIKSAGIHMYASFGRLEDARKMFYSGE- 194

Query: 236 KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQY 295
            DVV WN MI GY + G  E A  LF +M  + +   ++    L    N      L    
Sbjct: 195 SDVVCWNTMIDGYLKCGVLEAAKGLFAQMPVKNIGSWNVMINGLAKGGNLGDARKL---- 250

Query: 296 FDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM---PFKPQPAIFGTLLSACR 352
           FD M     I+     ++ MVD    AG+  EA+++ ++M     +P   I  ++L+AC 
Sbjct: 251 FDEMSERDEIS-----WSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVLAACS 305

Query: 353 VHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNV 407
               +D   +    L   +    A     L ++YA   + D    +   MKE  +
Sbjct: 306 NIGAIDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKEREI 360


>gi|449467070|ref|XP_004151248.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 617

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 224/552 (40%), Positives = 332/552 (60%), Gaps = 14/552 (2%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDV------VSYNIMLSCILLNSDD 54
           ++     +WN+ L  FA+      DA  LF ++ + D+       S+ +     LL+  +
Sbjct: 73  LDASEVTHWNTCLRSFAEGDSP-ADAISLFYRLREFDISPDHYTCSFVLKACSRLLDVRN 131

Query: 55  VVAAFDFFQRLPIKDTASWNTMISG-FVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE 113
                 + ++L ++       MI   +     +  AR +F  MP+++ ++W+ MI+  ++
Sbjct: 132 GKIVHGYVEKLGLQSNMFLQNMIVHLYALCGEIGVARKVFDKMPQRDVITWNIMIARLVK 191

Query: 114 CGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNAS 173
            G  + A +LF   P ++V +WT+MI GY + G      +++ + L   M   G+ PN  
Sbjct: 192 MGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGK-----SKEAIDLFLEMEDAGLLPNEV 246

Query: 174 SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI 233
           ++ +VL+ C+ + +L LG+++H    +S   K+      LI MY KCG LEDAC++F  +
Sbjct: 247 TVVAVLVACADMGNLVLGRRIHDFSNRSGYEKNIRVCNTLIDMYVKCGCLEDACRIFDNM 306

Query: 234 QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGI 293
           + + VV+W+AMI+G A HG+ E AL LF+KM + G+KP+++TF+ +L AC+H G+V+ G 
Sbjct: 307 EERTVVSWSAMIAGLAAHGRAEDALALFNKMINTGVKPNAVTFIGILHACSHMGMVEKGR 366

Query: 294 QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRV 353
           +YF SM  DYGI  + +HY CMVDL  RAG L EA + I  MP  P   ++G LL  C+V
Sbjct: 367 KYFASMTRDYGIVPRIEHYGCMVDLFSRAGLLQEAHEFIMNMPIAPNGVVWGALLGGCKV 426

Query: 354 HKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGY 413
           HK + LAE A  +L  L+P N  G YV L+NIYA   +W+DVAR+R  M++  V K PG+
Sbjct: 427 HKNIKLAEEATRHLSKLDPLN-DGYYVVLSNIYAEAGRWEDVARVRKLMRDRGVKKTPGW 485

Query: 414 SWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQL 473
           S I V  VV+ F +GD  HP+   I +  ++L +RMKL GYVP+    L  + E+ KE+ 
Sbjct: 486 SSIMVEGVVYNFVAGDDTHPQTEEIFQTWEKLLQRMKLKGYVPNTSVVLLDMEEDQKEKF 545

Query: 474 LLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHH 533
           L  HSEKLA+ FGLIK   GT IR+ KNLRVC DCH A K IS +  REI+VRD  RFH 
Sbjct: 546 LYRHSEKLAVVFGLIKTTPGTVIRIMKNLRVCEDCHAALKIISVVSTREIVVRDRNRFHC 605

Query: 534 FKDGTCSCGDYW 545
           FK+G+CSCGDYW
Sbjct: 606 FKNGSCSCGDYW 617


>gi|449526834|ref|XP_004170418.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 666

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 222/525 (42%), Positives = 313/525 (59%), Gaps = 39/525 (7%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G+L+DA+++F    + DVV +N M+    L    + AA   F ++P+K+  SWN MI+G 
Sbjct: 181 GRLEDARKMFYS-GESDVVCWNTMIDG-YLKCGVLEAAKGLFAQMPVKNIGSWNVMINGL 238

Query: 81  VQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMIS 140
            +  N+  AR LF  M E++ +SWS+M+ GYI  G+  +A+E+F+    +          
Sbjct: 239 AKGGNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQMQREET-------- 290

Query: 141 GYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK 200
                                       RP    LSSVL  CS++ ++  G+ VH  + +
Sbjct: 291 ----------------------------RPGRFILSSVLAACSNIGAIDQGRWVHAYLKR 322

Query: 201 SPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRL 260
           + +  D    T L+ MY KCG L+   ++F E++ +++ TWNAMI G A HG+ E AL L
Sbjct: 323 NSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDALEL 382

Query: 261 FDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLG 320
           F K+++  MKP+ IT V +L AC HAG VD G++ F +M   YG+  + +HY CMVDLLG
Sbjct: 383 FSKLQEGRMKPNGITLVGVLTACAHAGFVDKGLRIFQTMREFYGVDPELEHYGCMVDLLG 442

Query: 321 RAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYV 380
           R+G   EA DLI  MP KP  A++G LL ACR+H   DLAE     L  L P N +G YV
Sbjct: 443 RSGLFSEAEDLINSMPMKPNAAVWGALLGACRIHGNFDLAERVGKILLELEPQN-SGRYV 501

Query: 381 QLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHE 440
            L+NIYA + ++DDV++IR  MK   +  +PG S +++   VHEF+ GD  HP++  I+ 
Sbjct: 502 LLSNIYAKVGRFDDVSKIRKLMKNRGIKTVPGVSIVDLNGTVHEFKMGDGSHPQMKEIYR 561

Query: 441 KLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFK 500
           KLK +++R+++AG+ PD    L  + EE KE  + +HSEKLAIAFGLI    G  I + K
Sbjct: 562 KLKIIKERLQMAGHSPDTSQVLFDIDEEEKETAVNYHSEKLAIAFGLINTLPGKRIHIVK 621

Query: 501 NLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           NLRVC DCH ATK IS I  REIIVRD  R+HHFK+GTCSC D+W
Sbjct: 622 NLRVCDDCHSATKLISQIFDREIIVRDRVRYHHFKNGTCSCKDFW 666



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 68/239 (28%), Positives = 108/239 (45%), Gaps = 19/239 (7%)

Query: 116 QLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSL 175
             D A+++F   P  +V  W  +I G +     EN+     +     M+ +  RPN  + 
Sbjct: 82  NFDFALKVFSSIPNPNVFIWNIVIKGCL-----ENNKLFKAIYFYGRMV-IDARPNKFTY 135

Query: 176 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR 235
            ++   CS   ++Q G+Q+H  V K  +  D    +  I MY   G LEDA K+F   + 
Sbjct: 136 PTLFKACSVAQAVQEGRQIHGHVVKHGIGSDVHIKSAGIQMYASFGRLEDARKMFYSGE- 194

Query: 236 KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQY 295
            DVV WN MI GY + G  E A  LF +M  + +   ++    L    N      L    
Sbjct: 195 SDVVCWNTMIDGYLKCGVLEAAKGLFAQMPVKNIGSWNVMINGLAKGGNLGDARKL---- 250

Query: 296 FDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM---PFKPQPAIFGTLLSAC 351
           FD M     I+     ++ MVD    AG+  EA+++ ++M     +P   I  ++L+AC
Sbjct: 251 FDEMSERDEIS-----WSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVLAAC 304



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 68/302 (22%), Positives = 127/302 (42%), Gaps = 60/302 (19%)

Query: 6   TVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRL 65
            V WN+++ G+ K  G L+ A+ LF ++P  ++ S+N+M++  L    ++  A   F  +
Sbjct: 197 VVCWNTMIDGYLKC-GVLEAAKGLFAQMPVKNIGSWNVMING-LAKGGNLGDARKLFDEM 254

Query: 66  PIKDTASWNTMISGFVQKKNMAKARDLFLAMP---------------------------- 97
             +D  SW++M+ G++      +A ++F  M                             
Sbjct: 255 SERDEISWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVLAACSNIGAIDQGR 314

Query: 98  ------EKNSVSW-----SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFG 146
                 ++NS+       +A++  Y +CG+LD   E+F+    + +  W AMI G    G
Sbjct: 315 WVHAYLKRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHG 374

Query: 147 YVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKD 206
                 AED L+L   +    ++PN  +L  VL  C+H   +  G ++ Q +      ++
Sbjct: 375 R-----AEDALELFSKLQEGRMKPNGITLVGVLTACAHAGFVDKGLRIFQTM------RE 423

Query: 207 TTALTPLISMYCKCGDLEDACKLFLEIQ--------RKDVVTWNAMISGYAQHGKGEKAL 258
              + P +  Y    DL     LF E +        + +   W A++     HG  + A 
Sbjct: 424 FYGVDPELEHYGCMVDLLGRSGLFSEAEDLINSMPMKPNAAVWGALLGACRIHGNFDLAE 483

Query: 259 RL 260
           R+
Sbjct: 484 RV 485



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 64/274 (23%), Positives = 118/274 (43%), Gaps = 23/274 (8%)

Query: 179 LLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCK--CGDLEDACKLFLEIQRK 236
           L     ++SLQ   Q+H LV +S   +D      L+  Y      + + A K+F  I   
Sbjct: 37  LFDSKSITSLQYLTQLHALVLRSGHFQDHYVSGALLKCYANPHFSNFDFALKVFSSIPNP 96

Query: 237 DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYF 296
           +V  WN +I G  ++ K  KA+  + +M  +  +P+  T+  L  AC+ A  V  G Q  
Sbjct: 97  NVFIWNIVIKGCLENNKLFKAIYFYGRMVIDA-RPNKFTYPTLFKACSVAQAVQEGRQIH 155

Query: 297 DSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAI--FGTLLSACRVH 354
             +V  +GI +     +  + +    G+L +A    +KM +  +  +  + T++     +
Sbjct: 156 GHVVK-HGIGSDVHIKSAGIQMYASFGRLEDA----RKMFYSGESDVVCWNTMIDG---Y 207

Query: 355 KRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYS 414
            +  + E AA  LF   P    G +  + N  A      D  ++   M E + +     S
Sbjct: 208 LKCGVLE-AAKGLFAQMPVKNIGSWNVMINGLAKGGNLGDARKLFDEMSERDEI-----S 261

Query: 415 WIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKR 448
           W    ++V  + S  R + E + I ++++  E R
Sbjct: 262 W---SSMVDGYISAGR-YKEALEIFQQMQREETR 291


>gi|242048970|ref|XP_002462229.1| hypothetical protein SORBIDRAFT_02g022150 [Sorghum bicolor]
 gi|241925606|gb|EER98750.1| hypothetical protein SORBIDRAFT_02g022150 [Sorghum bicolor]
          Length = 686

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 219/514 (42%), Positives = 325/514 (63%), Gaps = 30/514 (5%)

Query: 6   TVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRL 65
            ++WN+++AG+  Q  ++++AQ++F+++PQ DVVS+N M+S       D+  A   F   
Sbjct: 190 AISWNALMAGYV-QCSQIEEAQKMFNRMPQRDVVSWNTMVSG-HARRGDMAEARRLFDVA 247

Query: 66  PIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFK 125
           PI+D  +W  ++SG+ Q   + +A+ +F AMPEKN+VSW+AM++ Y++   +++A ELF 
Sbjct: 248 PIRDVFTWTAVVSGYAQNGMLEEAKRVFDAMPEKNAVSWNAMMAAYVQRRMMEEAKELFD 307

Query: 126 VAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHL 185
             P ++V +W  M++GY + G ++ + A     +  MM        A+ L++   G    
Sbjct: 308 AMPCRNVASWNTMLTGYAQAGMLDEARA-----IFDMMPQKDAVSWAAMLAAYSQGGFSE 362

Query: 186 SSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMI 245
            +LQL K++ +                  +MY KCG++E+A   F E++ +D+V+WN MI
Sbjct: 363 ETLQLFKEMGR-----------------CAMYFKCGNMEEAHSAFEEMEERDIVSWNTMI 405

Query: 246 SGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGI 305
           +GYA+HG G++AL +FD M+    KPD IT V +L AC+H+GLV+ GI YF SM  D+G+
Sbjct: 406 AGYARHGFGKEALEVFDTMRKTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHRDFGV 465

Query: 306 AAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAM 365
            AKP+HYTCM+DLLGRAG+L EAV+L+K MPF+P   ++G LL A R+H+  +L   AA 
Sbjct: 466 TAKPEHYTCMIDLLGRAGRLDEAVNLMKDMPFEPDSTMWGALLGASRIHRNSELGRNAAE 525

Query: 366 NLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEF 425
            +F L P N AG YV L+NIYA+  KW DV ++RL M E  V K+PG+SWIEV   VH F
Sbjct: 526 KIFELEPEN-AGMYVLLSNIYASSGKWRDVDKMRLMMHERGVKKVPGFSWIEVQNKVHTF 584

Query: 426 RSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAF 485
             GD VHPE   I+  L++L+ RMK AGYV   +  LH V EE KE +L +HSEKLA+A+
Sbjct: 585 SVGDSVHPEREDIYGFLEDLDIRMKKAGYVSATDMVLHDVEEEEKEHMLKYHSEKLAVAY 644

Query: 486 GLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIE 519
           G++K+P G PIR     + C   H  T  I  +E
Sbjct: 645 GILKIPPGRPIR-----QCCNLGHATTAKIVVLE 673



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 95/335 (28%), Positives = 165/335 (49%), Gaps = 24/335 (7%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M+ ++T  +N++L G+A   G+L  A   F  IP+PD  SYN +L  + ++S  +  A  
Sbjct: 61  MSRRSTSTYNAMLGGYAAN-GRLTLALSFFRSIPRPDSFSYNTLLHALGVSSS-LADARA 118

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
            F  +P+KD+ S+N MIS       ++ AR  F   PEK++VSW+ M++ YI  G++ +A
Sbjct: 119 LFDEMPVKDSVSYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYIRNGRIQEA 178

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLL 180
            +LF        ++W A+++     GYV+ S  E+  K+   M      P    +S   +
Sbjct: 179 RDLFDSRTEWDAISWNALMA-----GYVQCSQIEEAQKMFNRM------PQRDVVSWNTM 227

Query: 181 GCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVT 240
              H     +  +  +L   +P+ +D    T ++S Y + G LE+A ++F  +  K+ V+
Sbjct: 228 VSGHARRGDMA-EARRLFDVAPI-RDVFTWTAVVSGYAQNGMLEEAKRVFDAMPEKNAVS 285

Query: 241 WNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV 300
           WNAM++ Y Q    E+A  LFD M    +     ++  +L     AG++D     FD M 
Sbjct: 286 WNAMMAAYVQRRMMEEAKELFDAMPCRNV----ASWNTMLTGYAQAGMLDEARAIFDMMP 341

Query: 301 NDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335
               ++     +  M+    + G   E + L K+M
Sbjct: 342 QKDAVS-----WAAMLAAYSQGGFSEETLQLFKEM 371



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 81/336 (24%), Positives = 154/336 (45%), Gaps = 54/336 (16%)

Query: 34  PQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQK---------- 83
           P  +V+  N  ++   + +  V  A   F  +  + T+++N M+ G+             
Sbjct: 31  PDAEVIRRNKAITA-HMRAGRVPDAERLFAAMSRRSTSTYNAMLGGYAANGRLTLALSFF 89

Query: 84  ---------------------KNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVE 122
                                 ++A AR LF  MP K+SVS++ MIS +   G +  A  
Sbjct: 90  RSIPRPDSFSYNTLLHALGVSSSLADARALFDEMPVKDSVSYNVMISSHANHGLVSLARH 149

Query: 123 LFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGC 182
            F +AP K  V+W  M++ Y++ G ++ +         R +       +A S ++++ G 
Sbjct: 150 YFDLAPEKDAVSWNGMLAAYIRNGRIQEA---------RDLFDSRTEWDAISWNALMAGY 200

Query: 183 SHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWN 242
              S ++      Q +F     +D  +   ++S + + GD+ +A +LF     +DV TW 
Sbjct: 201 VQCSQIEEA----QKMFNRMPQRDVVSWNTMVSGHARRGDMAEARRLFDVAPIRDVFTWT 256

Query: 243 AMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVND 302
           A++SGYAQ+G  E+A R+FD M ++    +++++ A++ A     +++   + FD+M   
Sbjct: 257 AVVSGYAQNGMLEEAKRVFDAMPEK----NAVSWNAMMAAYVQRRMMEEAKELFDAMPC- 311

Query: 303 YGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 338
             +A+    +  M+    +AG L EA  +   MP K
Sbjct: 312 RNVAS----WNTMLTGYAQAGMLDEARAIFDMMPQK 343


>gi|224106277|ref|XP_002314110.1| predicted protein [Populus trichocarpa]
 gi|222850518|gb|EEE88065.1| predicted protein [Populus trichocarpa]
          Length = 738

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 234/551 (42%), Positives = 328/551 (59%), Gaps = 16/551 (2%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKI----PQPDVVSYNIMLSCILLNSDDVVA-- 57
           K  V+WNS+++GF  Q G  ++A +LF ++     +P+ V+   +LS      D      
Sbjct: 195 KDIVSWNSMISGFV-QGGSPEEALQLFKRMKMENARPNRVTMVGVLSACAKRIDLEFGRW 253

Query: 58  AFDFFQRLPIK-DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQ 116
           A D+ +R  I  +    N M+  +V+  ++  AR LF  M EK+ VSW+ MI GY + G 
Sbjct: 254 ACDYIERNGIDINLILSNAMLDMYVKCGSLEDARRLFDKMEEKDIVSWTTMIDGYAKVGD 313

Query: 117 LDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLR-MMIGLGIRPNASSL 175
            D A  +F V P + + AW A+IS Y      +N   ++ L + R + +    +PN  +L
Sbjct: 314 YDAARRVFDVMPREDITAWNALISSYQ-----QNGKPKEALAIFRELQLNKNTKPNEVTL 368

Query: 176 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR 235
           +S L  C+ L ++ LG  +H  + K  +  +    T LI MY KCG LE A ++F  ++R
Sbjct: 369 ASTLAACAQLGAMDLGGWIHVYIKKQGIKLNFHITTSLIDMYSKCGHLEKALEVFYSVER 428

Query: 236 KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQY 295
           +DV  W+AMI+G A HG G  A+ LF KM++  +KP+++TF  LL AC+H+GLVD G  +
Sbjct: 429 RDVFVWSAMIAGLAMHGHGRAAIDLFSKMQETKVKPNAVTFTNLLCACSHSGLVDEGRLF 488

Query: 296 FDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHK 355
           F+ M   YG+     HY CMVD+LGRAG L EAV+LI+KMP  P  +++G LL ACR++ 
Sbjct: 489 FNQMRPVYGVVPGSKHYACMVDILGRAGCLEEAVELIEKMPIVPSASVWGALLGACRIYG 548

Query: 356 RLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSW 415
            ++LAE A   L   + +N  G YV L+NIYA   KWD V+R+R  MK + + K PG S 
Sbjct: 549 NVELAEMACSRLLETD-SNNHGAYVLLSNIYAKAGKWDCVSRLRQHMKVSGLEKEPGCSS 607

Query: 416 IEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEE-VKEQLL 474
           IEV  ++HEF  GD  HP    I+ KL E+  R+K  GYV D    L  V EE +KE  L
Sbjct: 608 IEVNGIIHEFLVGDNSHPLSTEIYSKLDEIVARIKSTGYVSDESHLLQFVEEEYMKEHAL 667

Query: 475 LFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHF 534
             HSEKLAIA+GLI++    PIR+ KNLRVCGDCH   K IS +  R+I++RD  RFHHF
Sbjct: 668 NLHSEKLAIAYGLIRMEPSQPIRIVKNLRVCGDCHSVAKLISKLYNRDILLRDRYRFHHF 727

Query: 535 KDGTCSCGDYW 545
             G CSC DYW
Sbjct: 728 SGGNCSCMDYW 738



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 91/358 (25%), Positives = 160/358 (44%), Gaps = 64/358 (17%)

Query: 23  LKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFF------QRLP--------IK 68
           L  A ++FD+IP+P++ ++N ++     +   +     F       QR P        IK
Sbjct: 80  LDYACKVFDQIPRPNLYTWNTLIRAFASSPKPIQGLLVFIQMLHESQRFPNSYTFPFVIK 139

Query: 69  DTASWNTMISGFVQKKNMAKA---RDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFK 125
                +++++G      + KA    DLF++         +++I  Y   G LD A  +F 
Sbjct: 140 AATEVSSLLAGQAIHGMVMKASFGSDLFIS---------NSLIHFYSSLGDLDSAYLVFS 190

Query: 126 VAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHL 185
               K +V+W +MISG+++ G       E+ L+L + M     RPN  ++  VL  C+  
Sbjct: 191 KIVEKDIVSWNSMISGFVQGGS-----PEEALQLFKRMKMENARPNRVTMVGVLSACAKR 245

Query: 186 SSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMI 245
             L+ G+     + ++ +  +      ++ MY KCG LEDA +LF +++ KD+V+W  MI
Sbjct: 246 IDLEFGRWACDYIERNGIDINLILSNAMLDMYVKCGSLEDARRLFDKMEEKDIVSWTTMI 305

Query: 246 SGYAQHGKGEKALRLFDKMKDEGM--------------------------------KPDS 273
            GYA+ G  + A R+FD M  E +                                KP+ 
Sbjct: 306 DGYAKVGDYDAARRVFDVMPREDITAWNALISSYQQNGKPKEALAIFRELQLNKNTKPNE 365

Query: 274 ITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDL 331
           +T  + L AC   G +DLG  +    +   GI       T ++D+  + G L +A+++
Sbjct: 366 VTLASTLAACAQLGAMDLG-GWIHVYIKKQGIKLNFHITTSLIDMYSKCGHLEKALEV 422



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 73/228 (32%), Positives = 110/228 (48%), Gaps = 15/228 (6%)

Query: 116 QLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIR-PNASS 174
            LD A ++F   P  ++  W  +I  +       +     GL +   M+    R PN+ +
Sbjct: 79  SLDYACKVFDQIPRPNLYTWNTLIRAF-----ASSPKPIQGLLVFIQMLHESQRFPNSYT 133

Query: 175 LSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ 234
              V+   + +SSL  G+ +H +V K+    D      LI  Y   GDL+ A  +F +I 
Sbjct: 134 FPFVIKAATEVSSLLAGQAIHGMVMKASFGSDLFISNSLIHFYSSLGDLDSAYLVFSKIV 193

Query: 235 RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ 294
            KD+V+WN+MISG+ Q G  E+AL+LF +MK E  +P+ +T V +L AC  A  +DL   
Sbjct: 194 EKDIVSWNSMISGFVQGGSPEEALQLFKRMKMENARPNRVTMVGVLSAC--AKRIDLE-- 249

Query: 295 YFDSMVNDY----GIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 338
            F     DY    GI         M+D+  + G L +A  L  KM  K
Sbjct: 250 -FGRWACDYIERNGIDINLILSNAMLDMYVKCGSLEDARRLFDKMEEK 296



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 66/274 (24%), Positives = 122/274 (44%), Gaps = 30/274 (10%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  K  V+W +++ G+AK  G    A+ +FD +P+ D+ ++N ++S    N      A  
Sbjct: 293 MEEKDIVSWTTMIDGYAKV-GDYDAARRVFDVMPREDITAWNALISSYQQNGKP-KEALA 350

Query: 61  FFQRLPI-KDTASWNTMISGFVQKKNMAKARDL---FLAMPEKNSVSW-----SAMISGY 111
            F+ L + K+T      ++  +       A DL        +K  +       +++I  Y
Sbjct: 351 IFRELQLNKNTKPNEVTLASTLAACAQLGAMDLGGWIHVYIKKQGIKLNFHITTSLIDMY 410

Query: 112 IECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPN 171
            +CG L+KA+E+F     + V  W+AMI+G    G+         + L   M    ++PN
Sbjct: 411 SKCGHLEKALEVFYSVERRDVFVWSAMIAGLAMHGH-----GRAAIDLFSKMQETKVKPN 465

Query: 172 ASSLSSVLLGCSHLSSLQLGK----QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC 227
           A + +++L  CSH   +  G+    Q+  +    P  K    +  ++    + G LE+A 
Sbjct: 466 AVTFTNLLCACSHSGLVDEGRLFFNQMRPVYGVVPGSKHYACMVDILG---RAGCLEEAV 522

Query: 228 KLFLEIQRKDVV----TWNAMISGYAQHGKGEKA 257
           +L   I++  +V     W A++     +G  E A
Sbjct: 523 EL---IEKMPIVPSASVWGALLGACRIYGNVELA 553


>gi|297739440|emb|CBI29622.3| unnamed protein product [Vitis vinifera]
          Length = 603

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 227/548 (41%), Positives = 339/548 (61%), Gaps = 16/548 (2%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  +   +WN++++G+ K   +   AQ LFD +P+ +V+++  M++       D+ AA  
Sbjct: 69  MYARKVADWNAMVSGYWKWESE-GQAQWLFDVMPERNVITWTAMVTG-YAKVKDLEAARR 126

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM--PEKNSVSWSAMISGYIECGQLD 118
           +F  +P +   SWN M+SG+ Q     +A  LF  M    +NSV+W+AMIS Y+  G LD
Sbjct: 127 YFDCMPERSVVSWNAMLSGYAQNGLAEEALRLFDEMLGAYRNSVTWNAMISAYMRVGDLD 186

Query: 119 KAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI-GLGIRPNASSLSS 177
            A +LF   P ++VV W +MI+GY      +N  +   ++L + MI    + P+  ++ S
Sbjct: 187 SARKLFNTMPGRNVVTWNSMIAGY-----AQNGQSAMAIELFKEMITAKKLTPDEVTMVS 241

Query: 178 VLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKD 237
           V+  C HL +L+LG  V + + ++ +    +    +I MY +CG +EDA ++F E+  +D
Sbjct: 242 VISACGHLGALELGNWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATRD 301

Query: 238 VVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFD 297
           VV++N +ISG+A HG G +A+ L   MK+ G++PD +TF+ +L AC+HAGL++ G + F+
Sbjct: 302 VVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHAGLLEEGRKVFE 361

Query: 298 SMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRL 357
           S + D  I    DHY CMVDLLGR G+L +A   +++MP +P   ++G+LL+A R+HK++
Sbjct: 362 S-IKDPAI----DHYACMVDLLGRVGELEDAKRTMERMPMEPHAGVYGSLLNASRIHKQV 416

Query: 358 DLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIE 417
           +L E AA  LF L P N+ G ++ L+NIYA+  +W DV RIR +MK+  V K  G+SW+E
Sbjct: 417 ELGELAANKLFELEPDNS-GNFILLSNIYASAGRWKDVERIREAMKKGGVKKTTGWSWVE 475

Query: 418 VGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFH 477
            G  +H+F   DR H     I++ L EL K+M+ AGY+ D    L  V EE KE+++  H
Sbjct: 476 YGGKLHKFIVADRSHERSDDIYQLLIELRKKMREAGYIADKSCVLRDVEEEEKEEIVGTH 535

Query: 478 SEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDG 537
           SEKLAI + L+    G  IRV KNLRVC DCH A K IS +E R IIVRD  RFH F DG
Sbjct: 536 SEKLAICYALLVSEAGAVIRVVKNLRVCWDCHTAIKMISKLEGRVIIVRDNNRFHCFNDG 595

Query: 538 TCSCGDYW 545
            CSC DYW
Sbjct: 596 LCSCKDYW 603



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 77/295 (26%), Positives = 131/295 (44%), Gaps = 66/295 (22%)

Query: 87  AKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKF- 145
           A  R+  + M  +    W+AM+SGY +     +A  LF V P ++V+ WTAM++GY K  
Sbjct: 60  AFVRNAVIDMYARKVADWNAMVSGYWKWESEGQAQWLFDVMPERNVITWTAMVTGYAKVK 119

Query: 146 -------------------------GYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLL 180
                                    GY +N  AE+ L+L   M+G               
Sbjct: 120 DLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEALRLFDEMLG--------------- 164

Query: 181 GCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVT 240
                                   +++     +IS Y + GDL+ A KLF  +  ++VVT
Sbjct: 165 ----------------------AYRNSVTWNAMISAYMRVGDLDSARKLFNTMPGRNVVT 202

Query: 241 WNAMISGYAQHGKGEKALRLFDKM-KDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSM 299
           WN+MI+GYAQ+G+   A+ LF +M   + + PD +T V+++ AC H G ++LG  +    
Sbjct: 203 WNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALELG-NWVVRF 261

Query: 300 VNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVH 354
           + +  I      +  M+ +  R G + +A  + ++M  +   + + TL+S    H
Sbjct: 262 LTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATRDVVS-YNTLISGFAAH 315


>gi|413922867|gb|AFW62799.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 882

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 227/537 (42%), Positives = 325/537 (60%), Gaps = 17/537 (3%)

Query: 19  QRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNS--DDVVAAFDFFQRLPIKDTASWNTM 76
           + G L DA+++FD +P+ D++ +N ++S    +    +V++ F   ++  +    +  T+
Sbjct: 353 KHGFLDDARKVFDFMPRRDLILWNALISGCSHDGRHGEVLSLFHRMRKEGLDLDVNRTTL 412

Query: 77  IS---GFVQKKNMAKARDLFLAMPEK-----NSVSWSAMISGYIECGQLDKAVELFKVAP 128
            S        + +   R +  A+ EK     +S   + +I  Y +CGQLD A+++FK + 
Sbjct: 413 ASVLKSTASSEAICHTRQVH-ALAEKIGLLSDSHVINGLIDSYWKCGQLDYAIKVFKESR 471

Query: 129 VKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSL 188
              +++ T M++   +  +      ED +KL   M+  G+ P++  LSS+L  C+ LS+ 
Sbjct: 472 SDDIISSTTMMTALSQCDH-----GEDAIKLFVQMLRKGLEPDSFVLSSLLNACTSLSAY 526

Query: 189 QLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGY 248
           + GKQVH  + K     D  A   L+  Y KCG +EDA   F  +  + +V+W+AMI G 
Sbjct: 527 EQGKQVHAHLIKRQFTSDVFAGNALVYAYAKCGSIEDADMAFSGLPERGIVSWSAMIGGL 586

Query: 249 AQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK 308
           AQHG G++AL LF +M DEG+ P+ IT  ++L ACNHAGLVD   +YF+SM   +GI   
Sbjct: 587 AQHGHGKRALDLFHRMLDEGVAPNHITLTSVLSACNHAGLVDDAKKYFESMKETFGIDRT 646

Query: 309 PDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLF 368
            +HY CM+D+LGRAGKL +A++L+  MPF+   A++G LL A RVH+  +L   AA  LF
Sbjct: 647 EEHYACMIDILGRAGKLEDAMELVNNMPFQANAAVWGALLGASRVHRDPELGRMAAEKLF 706

Query: 369 NLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSG 428
            L P   +G +V LAN YA+   WD++A++R  MK++NV K P  SW+E+   VH F  G
Sbjct: 707 TLEP-EKSGTHVLLANTYASAGMWDEMAKVRKLMKDSNVKKEPAMSWVEIKDKVHTFIVG 765

Query: 429 DRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLI 488
           D+ HP    I+ KL EL   M  AGYVP++E  LH V    KE LL  HSE+LA+AF LI
Sbjct: 766 DKSHPMTRDIYGKLAELGDLMNKAGYVPNVEVDLHDVDRSEKELLLSHHSERLAVAFALI 825

Query: 489 KVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
             P G PIRV KNLR+C DCH A KYIS I  REII+RD  RFHHF +GTCSCGDYW
Sbjct: 826 STPSGAPIRVKKNLRICRDCHVAFKYISKIVSREIIIRDINRFHHFTNGTCSCGDYW 882



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 108/368 (29%), Positives = 172/368 (46%), Gaps = 44/368 (11%)

Query: 10  NSVLAGFAKQ------RGKLKDA-QELFDKIPQPDVVSYNIMLSCILLNS--DDVVAAFD 60
           + +LAGF+        R +L  A + +FD+IP P  VS++ +++    N    D + AF 
Sbjct: 33  SGLLAGFSNHLLTLYSRCRLPSAARAVFDEIPDPCHVSWSSLVTAYSNNGMPRDALLAFR 92

Query: 61  FFQ---------RLPIKDTASWNTMISGFVQKKNMAK--ARDLFLAMPEKNSVSWSAMIS 109
             +          LP+    + +      V    +A     D+F+A         +A+++
Sbjct: 93  AMRGRGVPCNEFALPVVLKCAPDVRFGAQVHALAVATRLVHDVFVA---------NALVA 143

Query: 110 GYIECGQLDKAVELFK----VAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIG 165
            Y   G +D+A  +F     V   ++ V+W  MIS Y+K     N  + D + + R M+ 
Sbjct: 144 VYGGFGMVDEARRMFDEYVGVGGERNAVSWNTMISAYVK-----NDQSGDAIGVFREMVW 198

Query: 166 LGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLED 225
            G RPN    S V+  C+    L+ G+QVH  V ++   KD      L+ MY K GD+E 
Sbjct: 199 SGERPNEFGFSCVVNACTGSRDLEAGRQVHGAVVRTGYEKDVFTANALVDMYSKLGDIEM 258

Query: 226 ACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNH 285
           A  +F ++   DVV+WNA ISG   HG   +AL L  +MK  G+ P+  T  ++L AC  
Sbjct: 259 AATVFEKMPAADVVSWNAFISGCVTHGHDHRALELLLQMKSSGLVPNVFTLSSVLKACAG 318

Query: 286 AGLVDLGIQYFDSMVNDYGIAAKPDHYTC--MVDLLGRAGKLVEAVDLIKKMPFKPQPAI 343
           AG  +LG Q    MV      A  D +    +VD+  + G L +A  +   MP +    +
Sbjct: 319 AGAFNLGRQIHGFMVK---AVADFDEFVAVGLVDMYAKHGFLDDARKVFDFMP-RRDLIL 374

Query: 344 FGTLLSAC 351
           +  L+S C
Sbjct: 375 WNALISGC 382



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 88/336 (26%), Positives = 165/336 (49%), Gaps = 21/336 (6%)

Query: 11  SVLAGFAKQRGKLKDAQELFDKI----PQPDVVSYNIMLSCILLN--SDDVVAAF-DFFQ 63
           +V  GF    G + +A+ +FD+      + + VS+N M+S  + N  S D +  F +   
Sbjct: 143 AVYGGF----GMVDEARRMFDEYVGVGGERNAVSWNTMISAYVKNDQSGDAIGVFREMVW 198

Query: 64  RLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMISGYIECGQLDK 119
                +   ++ +++     +++   R +  A+     EK+  + +A++  Y + G ++ 
Sbjct: 199 SGERPNEFGFSCVVNACTGSRDLEAGRQVHGAVVRTGYEKDVFTANALVDMYSKLGDIEM 258

Query: 120 AVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVL 179
           A  +F+  P   VV+W A ISG +  G+   +     L+LL  M   G+ PN  +LSSVL
Sbjct: 259 AATVFEKMPAADVVSWNAFISGCVTHGHDHRA-----LELLLQMKSSGLVPNVFTLSSVL 313

Query: 180 LGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVV 239
             C+   +  LG+Q+H  + K+    D      L+ MY K G L+DA K+F  + R+D++
Sbjct: 314 KACAGAGAFNLGRQIHGFMVKAVADFDEFVAVGLVDMYAKHGFLDDARKVFDFMPRRDLI 373

Query: 240 TWNAMISGYAQHGKGEKALRLFDKMKDEGMKPD-SITFVALLLACNHAGLVDLGIQYFDS 298
            WNA+ISG +  G+  + L LF +M+ EG+  D + T +A +L    +       +   +
Sbjct: 374 LWNALISGCSHDGRHGEVLSLFHRMRKEGLDLDVNRTTLASVLKSTASSEAICHTRQVHA 433

Query: 299 MVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKK 334
           +    G+ +       ++D   + G+L  A+ + K+
Sbjct: 434 LAEKIGLLSDSHVINGLIDSYWKCGQLDYAIKVFKE 469


>gi|356533814|ref|XP_003535453.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Glycine max]
          Length = 782

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 228/558 (40%), Positives = 337/558 (60%), Gaps = 22/558 (3%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIP----QPDVVSYNIMLSCI----LLNS 52
           M     V WN++++G+   RG  ++A +L  ++     Q D  +Y  ++S      L N 
Sbjct: 234 MTDHIAVAWNAMISGYV-HRGFYEEAFDLLRRMHSLGIQLDEYTYTSVISAASNAGLFNI 292

Query: 53  DDVVAAFDFFQRLPIKDTASW-----NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAM 107
              V A+    R  ++ +  +     N +I+ + +   + +AR +F  MP K+ VSW+A+
Sbjct: 293 GRQVHAYVL--RTVVQPSGHFVLSVNNALITLYTRCGKLVEARRVFDKMPVKDLVSWNAI 350

Query: 108 ISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLG 167
           +SG +   ++++A  +F+  PV+S++ WT MISG       +N + E+GLKL   M   G
Sbjct: 351 LSGCVNARRIEEANSIFREMPVRSLLTWTVMISGL-----AQNGFGEEGLKLFNQMKLEG 405

Query: 168 IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC 227
           + P   + +  +  CS L SL  G+Q+H  + +       +    LI+MY +CG +E A 
Sbjct: 406 LEPCDYAYAGAIASCSVLGSLDNGQQLHSQIIQLGHDSSLSVGNALITMYSRCGLVEAAD 465

Query: 228 KLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG 287
            +FL +   D V+WNAMI+  AQHG G +A++L++KM  E + PD ITF+ +L AC+HAG
Sbjct: 466 TVFLTMPYVDSVSWNAMIAALAQHGHGVQAIQLYEKMLKEDILPDRITFLTILSACSHAG 525

Query: 288 LVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTL 347
           LV  G  YFD+M   YGI  + DHY+ ++DLL RAG   EA ++ + MPF+P   I+  L
Sbjct: 526 LVKEGRHYFDTMRVCYGITPEEDHYSRLIDLLCRAGMFSEAKNVTESMPFEPGAPIWEAL 585

Query: 348 LSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNV 407
           L+ C +H  ++L   AA  L  L P    G Y+ L+N+YAA+ +WD+VAR+R  M+E  V
Sbjct: 586 LAGCWIHGNMELGIQAADRLLELMPQQD-GTYISLSNMYAALGQWDEVARVRKLMRERGV 644

Query: 408 VKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGE 467
            K PG SWIEV  +VH F   D VHPE+ +++  L++L   M+  GYVPD +F LH +  
Sbjct: 645 KKEPGCSWIEVENMVHVFLVDDAVHPEVHAVYRYLEQLVHEMRKLGYVPDTKFVLHDMES 704

Query: 468 EVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRD 527
           E KE  L  HSEKLA+ +G++K+PLG  IRVFKNLR+CGDCH A KYIS +  REIIVRD
Sbjct: 705 EQKEYALSTHSEKLAVVYGIMKLPLGATIRVFKNLRICGDCHNAFKYISKVVDREIIVRD 764

Query: 528 TTRFHHFKDGTCSCGDYW 545
             RFHHF++G CSC +YW
Sbjct: 765 RKRFHHFRNGECSCSNYW 782



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 112/427 (26%), Positives = 180/427 (42%), Gaps = 118/427 (27%)

Query: 26  AQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP--IKDTASWNTMISGFVQK 83
           A+ LFDKIP+PD+V+   MLS     + ++  A   F   P  I+DT S+N MI+ F   
Sbjct: 50  ARYLFDKIPKPDIVAATTMLSA-YSAAGNIKLAHQLFNATPMSIRDTVSYNAMITAFSHS 108

Query: 84  KNMAKARDLFLAM------PEKNSVS-------------------------W-------- 104
            +   A  LF+ M      P+  + S                         W        
Sbjct: 109 HDGHAALQLFVQMKRLGFVPDPFTFSSVLGALSLIADEETHCQQLHCEVFKWGALSVPSV 168

Query: 105 -SAMISGYIECGQ---------LDKAVELFKVAPV--KSVVAWTAMISGYMK-------- 144
            +A++S Y+ C           +  A +LF  AP   +   AWT +I+GY++        
Sbjct: 169 LNALMSCYVSCASSPLVNSCVLMAAARKLFDEAPPGRRDEPAWTTIIAGYVRNDDLVAAR 228

Query: 145 ------------------FGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLS 186
                              GYV   + E+   LLR M  LGI+ +  + +SV+   S+  
Sbjct: 229 ELLEGMTDHIAVAWNAMISGYVHRGFYEEAFDLLRRMHSLGIQLDEYTYTSVISAASNAG 288

Query: 187 SLQLGKQVHQLVFKSPLCKD----TTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWN 242
              +G+QVH  V ++ +        +    LI++Y +CG L +A ++F ++  KD+V+WN
Sbjct: 289 LFNIGRQVHAYVLRTVVQPSGHFVLSVNNALITLYTRCGKLVEARRVFDKMPVKDLVSWN 348

Query: 243 A-------------------------------MISGYAQHGKGEKALRLFDKMKDEGMKP 271
           A                               MISG AQ+G GE+ L+LF++MK EG++P
Sbjct: 349 AILSGCVNARRIEEANSIFREMPVRSLLTWTVMISGLAQNGFGEEGLKLFNQMKLEGLEP 408

Query: 272 DSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDL 331
               +   + +C+  G +D G Q   S +   G  +       ++ +  R G LVEA D 
Sbjct: 409 CDYAYAGAIASCSVLGSLDNG-QQLHSQIIQLGHDSSLSVGNALITMYSRCG-LVEAADT 466

Query: 332 I-KKMPF 337
           +   MP+
Sbjct: 467 VFLTMPY 473



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 93/340 (27%), Positives = 151/340 (44%), Gaps = 64/340 (18%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAP--VKS 131
           N +I  + +  N+  AR LF  +P+ + V+ + M+S Y   G +  A +LF   P  ++ 
Sbjct: 35  NRLIDHYCKSFNIPYARYLFDKIPKPDIVAATTMLSAYSAAGNIKLAHQLFNATPMSIRD 94

Query: 132 VVAWTAMISGYMKFGYVENSWAEDG---LKLLRMMIGLGIRPNASSLSSVLLGCSHLSSL 188
            V++ AMI+ +        S + DG   L+L   M  LG  P+  + SSVL   S ++  
Sbjct: 95  TVSYNAMITAF--------SHSHDGHAALQLFVQMKRLGFVPDPFTFSSVLGALSLIADE 146

Query: 189 QLG-KQVHQLVFK----------------------SPLC--------------------K 205
           +   +Q+H  VFK                      SPL                     +
Sbjct: 147 ETHCQQLHCEVFKWGALSVPSVLNALMSCYVSCASSPLVNSCVLMAAARKLFDEAPPGRR 206

Query: 206 DTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMK 265
           D  A T +I+ Y +  DL  A +L   +     V WNAMISGY   G  E+A  L  +M 
Sbjct: 207 DEPAWTTIIAGYVRNDDLVAARELLEGMTDHIAVAWNAMISGYVHRGFYEEAFDLLRRMH 266

Query: 266 DEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY-----TCMVDLLG 320
             G++ D  T+ +++ A ++AGL ++G Q    ++    +     H+       ++ L  
Sbjct: 267 SLGIQLDEYTYTSVISAASNAGLFNIGRQVHAYVLRT--VVQPSGHFVLSVNNALITLYT 324

Query: 321 RAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLA 360
           R GKLVEA  +  KMP K   + +  +LS C   +R++ A
Sbjct: 325 RCGKLVEARRVFDKMPVKDLVS-WNAILSGCVNARRIEEA 363



 Score = 45.1 bits (105), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 52/133 (39%), Gaps = 33/133 (24%)

Query: 183 SHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR------- 235
           + LS     + VH  +  S        +  LI  YCK  ++  A  LF +I +       
Sbjct: 7   AQLSHTSFARAVHAHILTSGFKPFPLIINRLIDHYCKSFNIPYARYLFDKIPKPDIVAAT 66

Query: 236 --------------------------KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGM 269
                                     +D V++NAMI+ ++    G  AL+LF +MK  G 
Sbjct: 67  TMLSAYSAAGNIKLAHQLFNATPMSIRDTVSYNAMITAFSHSHDGHAALQLFVQMKRLGF 126

Query: 270 KPDSITFVALLLA 282
            PD  TF ++L A
Sbjct: 127 VPDPFTFSSVLGA 139


>gi|225436683|ref|XP_002262885.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 866

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 245/620 (39%), Positives = 348/620 (56%), Gaps = 82/620 (13%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDV-------------------VSY 41
           M  +  V+WNS++AGF      L +A ELF ++    V                   +S+
Sbjct: 254 MENRNAVSWNSMIAGFVTNGLDL-EAFELFYRMRLEGVKLTQTIFATVIKLCANIKEMSF 312

Query: 42  NIMLSC-ILLNSDD---------VVA---------AFDFFQRL-PIKDTASWNTMISGFV 81
              L C ++ N  D         +VA         AF  F  +  +++  SW  +ISG+V
Sbjct: 313 AKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFKLFCMMHGVQNVVSWTAIISGYV 372

Query: 82  QKKNMAKARDLFLAMPEK----NSVSWSAMISG--------------------------- 110
           Q     +A +LF  M  +    N  ++S +++                            
Sbjct: 373 QNGRTDRAMNLFCQMRREGVRPNHFTYSTILTANAAVSPSQIHALVVKTNYENSPSVGTA 432

Query: 111 ----YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGL 166
               Y + G  ++A ++F++   K +VAW+AM+SGY + G +E +     +K+   +   
Sbjct: 433 LSDSYSKIGDANEAAKIFELIDEKDIVAWSAMLSGYAQMGDIEGA-----VKIFLQLAKE 487

Query: 167 GIRPNASSLSSVLLGCSH-LSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLED 225
           G+ PN  + SSVL  C+   +S++ GKQ H    KS         + L++MY K G++E 
Sbjct: 488 GVEPNEFTFSSVLNACAAPTASVEQGKQFHSCSIKSGFSNALCVSSALVTMYAKRGNIES 547

Query: 226 ACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNH 285
           A ++F     +D+V+WN+MISGYAQHG G+K+L++F++M+ + ++ D ITF+ ++ AC H
Sbjct: 548 ANEVFKRQVDRDLVSWNSMISGYAQHGCGKKSLKIFEEMRSKNLELDGITFIGVISACTH 607

Query: 286 AGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFG 345
           AGLV+ G +YFD MV DY I    +HY+CMVDL  RAG L +A+DLI KMPF     I+ 
Sbjct: 608 AGLVNEGQRYFDLMVKDYHIVPTMEHYSCMVDLYSRAGMLEKAMDLINKMPFPAGATIWR 667

Query: 346 TLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKEN 405
           TLL+ACRVH  + L E AA  L +L P ++A  YV L+NIYA    W + A++R  M   
Sbjct: 668 TLLAACRVHLNVQLGELAAEKLISLQPQDSAA-YVLLSNIYATAGNWQERAKVRKLMDMK 726

Query: 406 NVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAV 465
            V K  GYSWIEV      F +GD  HP+   I+ KL+EL  R+K AGY PD ++ LH V
Sbjct: 727 KVKKEAGYSWIEVKNKTFSFMAGDLSHPQSDRIYLKLEELSIRLKDAGYYPDTKYVLHDV 786

Query: 466 GEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIV 525
            EE KE +L  HSE+LAIAFGLI  P GTPI++ KNLRVCGDCH   K IS IE R+I+V
Sbjct: 787 EEEHKEVILSQHSERLAIAFGLIATPPGTPIQIVKNLRVCGDCHTVIKLISKIEGRDIVV 846

Query: 526 RDTTRFHHFKDGTCSCGDYW 545
           RD+ RFHHFK G+CSCGDYW
Sbjct: 847 RDSNRFHHFKGGSCSCGDYW 866



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 95/323 (29%), Positives = 168/323 (52%), Gaps = 23/323 (7%)

Query: 23  LKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQ 82
           + DA+ +FD +   + VS+N M++  + N  D+  AF+ F R+ ++      T+ +  ++
Sbjct: 244 VSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDL-EAFELFYRMRLEGVKLTQTIFATVIK 302

Query: 83  K----KNMAKARDLFLAMPEKNSVSW-----SAMISGYIECGQLDKAVELF-KVAPVKSV 132
                K M+ A+ L   +  KN   +     +A++  Y +C ++D A +LF  +  V++V
Sbjct: 303 LCANIKEMSFAKQLHCQVI-KNGSDFDLNIKTALMVAYSKCSEIDDAFKLFCMMHGVQNV 361

Query: 133 VAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGK 192
           V+WTA+ISGY     V+N   +  + L   M   G+RPN  + S++L   + +S      
Sbjct: 362 VSWTAIISGY-----VQNGRTDRAMNLFCQMRREGVRPNHFTYSTILTANAAVSP----S 412

Query: 193 QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHG 252
           Q+H LV K+      +  T L   Y K GD  +A K+F  I  KD+V W+AM+SGYAQ G
Sbjct: 413 QIHALVVKTNYENSPSVGTALSDSYSKIGDANEAAKIFELIDEKDIVAWSAMLSGYAQMG 472

Query: 253 KGEKALRLFDKMKDEGMKPDSITFVALLLACNH-AGLVDLGIQYFDSMVNDYGIAAKPDH 311
             E A+++F ++  EG++P+  TF ++L AC      V+ G Q+    +   G +     
Sbjct: 473 DIEGAVKIFLQLAKEGVEPNEFTFSSVLNACAAPTASVEQGKQFHSCSIKS-GFSNALCV 531

Query: 312 YTCMVDLLGRAGKLVEAVDLIKK 334
            + +V +  + G +  A ++ K+
Sbjct: 532 SSALVTMYAKRGNIESANEVFKR 554



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 69/223 (30%), Positives = 116/223 (52%), Gaps = 3/223 (1%)

Query: 140 SGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVF 199
           + ++ F +  N   ++ L L   +   G   + SSLS VL  C  L    +GKQVH    
Sbjct: 60  NNHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCGCLFDRIVGKQVHCQCI 119

Query: 200 KSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALR 259
           K    +D +  T L+ MY K   +ED  ++F E++ K+VV+W ++++GY Q+G  E+AL+
Sbjct: 120 KCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSLLAGYRQNGLNEQALK 179

Query: 260 LFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLL 319
           LF +M+ EG+KP+  TF A+L      G V+ G+Q   +MV   G+ +       MV++ 
Sbjct: 180 LFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQ-VHTMVIKSGLDSTIFVGNSMVNMY 238

Query: 320 GRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEF 362
            ++  + +A  +   M  + + A+    + A  V   LDL  F
Sbjct: 239 SKSLMVSDAKAVFDSM--ENRNAVSWNSMIAGFVTNGLDLEAF 279



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 98/179 (54%), Gaps = 5/179 (2%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI 164
           ++++  Y++   ++    +F    VK+VV+WT++++GY      +N   E  LKL   M 
Sbjct: 131 TSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSLLAGYR-----QNGLNEQALKLFSQMQ 185

Query: 165 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 224
             GI+PN  + ++VL G +   +++ G QVH +V KS L         +++MY K   + 
Sbjct: 186 LEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIFVGNSMVNMYSKSLMVS 245

Query: 225 DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC 283
           DA  +F  ++ ++ V+WN+MI+G+  +G   +A  LF +M+ EG+K     F  ++  C
Sbjct: 246 DAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGVKLTQTIFATVIKLC 304


>gi|168023826|ref|XP_001764438.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|54695178|dbj|BAD67154.1| PpPPR_91 [Physcomitrella patens]
 gi|162684302|gb|EDQ70705.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 868

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 224/563 (39%), Positives = 339/563 (60%), Gaps = 31/563 (5%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDA-QELFDKIPQ-------PDVVSY-NIMLSCIL-- 49
           M+ +  ++W++++AG+A+   K K++  E+F  + +       P+ V++ +I+ +C    
Sbjct: 319 MSKRDVISWSAMIAGYAQSGYKDKESIDEVFQLLERMRREGVFPNKVTFMSILRACTAHG 378

Query: 50  -------LNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSV 102
                  ++++     F+  + L    TA +N     + +  ++ +A  +F  M  KN V
Sbjct: 379 ALEQGRQIHAELSKVGFELDRSL---QTAIFNM----YAKCGSIYEAEQVFSKMANKNVV 431

Query: 103 SWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRM 162
           +W++ +S YI+CG L  A ++F   P ++VV+W  MI+GY + G +   +     +LL  
Sbjct: 432 AWTSFLSMYIKCGDLSSAEKVFSEMPTRNVVSWNLMIAGYAQNGDIVKVF-----ELLSS 486

Query: 163 MIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGD 222
           M   G +P+  ++ ++L  C  L+ L+ GK VH    K  L  DT   T LI MY KCG 
Sbjct: 487 MKAEGFQPDRVTVITILEACGALAGLERGKLVHAEAVKLGLESDTVVATSLIGMYSKCGQ 546

Query: 223 LEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA 282
           + +A  +F ++  +D V WNAM++GY QHG G +A+ LF +M  E + P+ IT  A++ A
Sbjct: 547 VAEARTVFDKMSNRDTVAWNAMLAGYGQHGDGLEAVDLFKRMLKERVSPNEITLTAVISA 606

Query: 283 CNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPA 342
           C+ AGLV  G + F  M  D+ +  +  HY CMVDLLGRAG+L EA + I+ MP +P  +
Sbjct: 607 CSRAGLVQEGREIFRMMQEDFKMTPRKQHYGCMVDLLGRAGRLQEAEEFIQSMPCEPDIS 666

Query: 343 IFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSM 402
           ++  LL AC+ H  + LAE AA ++  L P+ A+  Y+ L+NIYA   +WDD  ++R  M
Sbjct: 667 VWHALLGACKSHNNVQLAERAAHHILELEPSYAS-VYITLSNIYAQAGRWDDSTKVRRVM 725

Query: 403 KENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFAL 462
            +  + K  G S IE+   +H F + D  HPE+ +IH +L+ L K MK AGY PD+ F L
Sbjct: 726 DDRGLKKDRGESSIEIDGRIHTFVAEDCAHPEIDAIHAELETLTKEMKEAGYTPDMRFVL 785

Query: 463 HAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKRE 522
           H V +  KE+ L  HSEKLAIA+GL+K P GTPIR+ KNLRVCGDCH ATK+IS I KRE
Sbjct: 786 HDVDDVQKEKALCHHSEKLAIAYGLLKTPSGTPIRIMKNLRVCGDCHTATKFISKIRKRE 845

Query: 523 IIVRDTTRFHHFKDGTCSCGDYW 545
           I+ RD  RFH+F +GTCSCGD+W
Sbjct: 846 IVARDANRFHYFNNGTCSCGDFW 868



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 114/420 (27%), Positives = 185/420 (44%), Gaps = 99/420 (23%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  +  V+W +++   A+ R KL +A EL++++ Q  + S N +    LLNS +   A +
Sbjct: 218 MTERNVVSWTAIIQANAQHR-KLNEAFELYEQMLQAGI-SPNAVTFVSLLNSCNTPEALN 275

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
             +R            I   + ++ +           E + +  +A+I+ Y +C  + +A
Sbjct: 276 RGRR------------IHSHISERGL-----------ETDMIVANALITMYCKCNSVQEA 312

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLL 180
            E+F     + V++W+AMI+GY + GY +    ++  +LL  M   G+ PN  +  S+L 
Sbjct: 313 REIFDRMSKRDVISWSAMIAGYAQSGYKDKESIDEVFQLLERMRREGVFPNKVTFMSILR 372

Query: 181 GCSHLSSLQLGKQVH-------------------------------QLVFKSPLCKDTTA 209
            C+   +L+ G+Q+H                               + VF     K+  A
Sbjct: 373 ACTAHGALEQGRQIHAELSKVGFELDRSLQTAIFNMYAKCGSIYEAEQVFSKMANKNVVA 432

Query: 210 LTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGM 269
            T  +SMY KCGDL  A K+F E+  ++VV+WN MI+GYAQ+G   K   L   MK EG 
Sbjct: 433 WTSFLSMYIKCGDLSSAEKVFSEMPTRNVVSWNLMIAGYAQNGDIVKVFELLSSMKAEGF 492

Query: 270 KPDSITFVALLLACN-----------HAGLVDLGIQ------------------------ 294
           +PD +T + +L AC            HA  V LG++                        
Sbjct: 493 QPDRVTVITILEACGALAGLERGKLVHAEAVKLGLESDTVVATSLIGMYSKCGQVAEART 552

Query: 295 YFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM---PFKPQPAIFGTLLSAC 351
            FD M N   +A     +  M+   G+ G  +EAVDL K+M      P       ++SAC
Sbjct: 553 VFDKMSNRDTVA-----WNAMLAGYGQHGDGLEAVDLFKRMLKERVSPNEITLTAVISAC 607



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 101/383 (26%), Positives = 187/383 (48%), Gaps = 59/383 (15%)

Query: 7   VNWNS---VLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNS----DDVVAAF 59
           VN N+   V+   AK R + +D + +  ++ +  V   +I L   L+N     +DV +A 
Sbjct: 54  VNSNTYGCVIEHCAKAR-RFEDGKMVHKQLDELGV-EIDIYLGNSLINFYSKFEDVASAE 111

Query: 60  DFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSW----------- 104
             F+R+ ++D  +W++MI+ +    + AKA D F  M     E N +++           
Sbjct: 112 QVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMTDANIEPNRITFLSILKACNNYS 171

Query: 105 ------------------------SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMIS 140
                                   +A+I+ Y +CG++  A E+F     ++VV+WTA+I 
Sbjct: 172 ILEKGRKIHTIVKAMGMETDVAVATALITMYSKCGEISVACEVFHKMTERNVVSWTAIIQ 231

Query: 141 GYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK 200
                   ++    +  +L   M+  GI PNA +  S+L  C+   +L  G+++H  + +
Sbjct: 232 -----ANAQHRKLNEAFELYEQMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISE 286

Query: 201 SPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEK---- 256
             L  D      LI+MYCKC  +++A ++F  + ++DV++W+AMI+GYAQ G  +K    
Sbjct: 287 RGLETDMIVANALITMYCKCNSVQEAREIFDRMSKRDVISWSAMIAGYAQSGYKDKESID 346

Query: 257 -ALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCM 315
              +L ++M+ EG+ P+ +TF+++L AC   G ++ G Q   + ++  G        T +
Sbjct: 347 EVFQLLERMRREGVFPNKVTFMSILRACTAHGALEQGRQ-IHAELSKVGFELDRSLQTAI 405

Query: 316 VDLLGRAGKLVEAVDLIKKMPFK 338
            ++  + G + EA  +  KM  K
Sbjct: 406 FNMYAKCGSIYEAEQVFSKMANK 428



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 52/206 (25%), Positives = 109/206 (52%), Gaps = 2/206 (0%)

Query: 155 DGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLI 214
           + ++LL ++   G+  N+++   V+  C+     + GK VH+ + +  +  D      LI
Sbjct: 39  EAIQLLGIIKQRGLLVNSNTYGCVIEHCAKARRFEDGKMVHKQLDELGVEIDIYLGNSLI 98

Query: 215 SMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSI 274
           + Y K  D+  A ++F  +  +DVVTW++MI+ YA +    KA   F++M D  ++P+ I
Sbjct: 99  NFYSKFEDVASAEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMTDANIEPNRI 158

Query: 275 TFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKK 334
           TF+++L ACN+  +++ G +   ++V   G+       T ++ +  + G++  A ++  K
Sbjct: 159 TFLSILKACNNYSILEKG-RKIHTIVKAMGMETDVAVATALITMYSKCGEISVACEVFHK 217

Query: 335 MPFKPQPAIFGTLLSACRVHKRLDLA 360
           M  +     +  ++ A   H++L+ A
Sbjct: 218 MT-ERNVVSWTAIIQANAQHRKLNEA 242


>gi|147795292|emb|CAN64990.1| hypothetical protein VITISV_001772 [Vitis vinifera]
          Length = 891

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 232/546 (42%), Positives = 339/546 (62%), Gaps = 19/546 (3%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK- 68
           N+++  +AK  G L+DA++ F ++   DVVS+N +++    N DD V A  FF ++ +  
Sbjct: 355 NALINMYAK-FGNLEDARKAFQQMFITDVVSWNSIIAAYEQN-DDPVTAHGFFVKMQLNG 412

Query: 69  ---DTASWNTMISGFVQKKNMAKARDLFLAMPEK-----NSVSWSAMISGYIECGQLDKA 120
              D  +  ++ S   Q ++   +R +   +  +     + V  +A++  Y + G LD A
Sbjct: 413 FQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSA 472

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLG-IRPNASSLSSVL 179
            ++F++  VK V++W  +I+GY      +N  A + +++ +MM     I PN  +  S+L
Sbjct: 473 HKVFEIILVKDVISWNTLITGY-----AQNGLASEAIEVYKMMEECKEIIPNQGTWVSIL 527

Query: 180 LGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVV 239
              +H+ +LQ G ++H  V K+ L  D    T LI +Y KCG L DA  LF ++ ++  V
Sbjct: 528 PAYAHVGALQQGMRIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSV 587

Query: 240 TWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSM 299
           TWNA+IS +  HG  EK L+LF +M DEG+KPD +TFV+LL AC+H+G V+ G   F  +
Sbjct: 588 TWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCF-RL 646

Query: 300 VNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDL 359
           + +YGI     HY CMVDLLGRAG L  A   IK MP +P  +I+G LL ACR+H  ++L
Sbjct: 647 MQEYGIKPSLKHYGCMVDLLGRAGYLEMAYGFIKDMPLQPDASIWGALLGACRIHGNIEL 706

Query: 360 AEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVG 419
            +FA+  LF ++  N  G YV L+NIYA + KW+ V ++R   +E  + K PG+S IEV 
Sbjct: 707 GKFASDRLFEVDSKNV-GYYVLLSNIYANVGKWEGVDKVRSLARERGLKKTPGWSTIEVN 765

Query: 420 TVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSE 479
             V  F +G++ HP+   I+E+L+ L  +MK  GY+PD  F L  V E+ KE +L  HSE
Sbjct: 766 RKVDVFYTGNQSHPKCKEIYEELRVLTAKMKSLGYIPDYSFVLQDVEEDEKEHILTSHSE 825

Query: 480 KLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTC 539
           +LAIAFG+I  P  +PIR+FKNLRVCGDCH ATK+IS I +REI+VRD+ RFHHFKDG C
Sbjct: 826 RLAIAFGIISTPPKSPIRIFKNLRVCGDCHNATKFISRITQREIVVRDSNRFHHFKDGIC 885

Query: 540 SCGDYW 545
           SCGDYW
Sbjct: 886 SCGDYW 891



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 80/264 (30%), Positives = 123/264 (46%), Gaps = 10/264 (3%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDT-ASWNTMISG 79
           G +  ++  FD+IPQ DV ++N M+S  + N     A   F+Q L + +    + T    
Sbjct: 165 GDVSLSRCTFDQIPQKDVYTWNSMISAYVHNGHFHEAIGCFYQLLLVSEIRPDFYTFPPV 224

Query: 80  FVQKKNMAKARDL----FLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAW 135
                 +   R +    F    + N    +++I  Y   G    A  LF   P + + +W
Sbjct: 225 LKACGTLVDGRRIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSW 284

Query: 136 TAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVH 195
            AMIS     G ++N  A   L +L  M   GI+ N  ++ S+L  C  L  +     +H
Sbjct: 285 NAMIS-----GLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLGDISTAMLIH 339

Query: 196 QLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGE 255
             V K  L  D      LI+MY K G+LEDA K F ++   DVV+WN++I+ Y Q+    
Sbjct: 340 LYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQNDDPV 399

Query: 256 KALRLFDKMKDEGMKPDSITFVAL 279
            A   F KM+  G +PD +T V+L
Sbjct: 400 TAHGFFVKMQLNGFQPDLLTLVSL 423



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 89/362 (24%), Positives = 169/362 (46%), Gaps = 51/362 (14%)

Query: 4   KTTVNWNSVLAG----FAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSD------ 53
           K    WN  +A        + G    A+ LFD +P  D+ S+N M+S ++ N +      
Sbjct: 243 KLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALD 302

Query: 54  ------------DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNS 101
                       + V         P     S   +I  +V K  +    DLF++      
Sbjct: 303 VLDEMRLEGIKMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGL--EFDLFVS------ 354

Query: 102 VSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLR 161
              +A+I+ Y + G L+ A + F+   +  VV+W ++I+ Y +    ++     G   ++
Sbjct: 355 ---NALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQ---NDDPVTAHGF-FVK 407

Query: 162 MMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSP-LCKDTTALTPLISMYCKC 220
           M +  G +P+  +L S+    +     +  + VH  + +   L +D      ++ MY K 
Sbjct: 408 MQLN-GFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKL 466

Query: 221 GDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKD-EGMKPDSITFVAL 279
           G L+ A K+F  I  KDV++WN +I+GYAQ+G   +A+ ++  M++ + + P+  T+V++
Sbjct: 467 GLLDSAHKVFEIILVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSI 526

Query: 280 LLACNHAGLVDLGIQYFDSMVN-----DYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKK 334
           L A  H G +  G++    ++      D  +A      TC++D+ G+ G+LV+A+ L  +
Sbjct: 527 LPAYAHVGALQQGMRIHGRVIKTNLHLDVFVA------TCLIDVYGKCGRLVDAMSLFYQ 580

Query: 335 MP 336
           +P
Sbjct: 581 VP 582



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 53/183 (28%), Positives = 89/183 (48%), Gaps = 7/183 (3%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI 164
           + +++ Y   G +  +   F   P K V  W +MIS Y+  G+   +         ++++
Sbjct: 155 TRLVNLYANLGDVSLSRCTFDQIPQKDVYTWNSMISAYVHNGHFHEAIG----CFYQLLL 210

Query: 165 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 224
              IRP+  +   VL  C  L     G+++H   FK     +      LI MY + G   
Sbjct: 211 VSEIRPDFYTFPPVLKACGTLVD---GRRIHCWAFKLGFQWNVFVAASLIHMYSRFGFTG 267

Query: 225 DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 284
            A  LF ++  +D+ +WNAMISG  Q+G   +AL + D+M+ EG+K + +T V++L  C 
Sbjct: 268 IARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCP 327

Query: 285 HAG 287
             G
Sbjct: 328 QLG 330



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 80/327 (24%), Positives = 135/327 (41%), Gaps = 68/327 (20%)

Query: 184 HLSSLQLGKQVHQLVF--------KSPLCKDTTAL-------------TPLISMYCKCGD 222
             SS  LG Q  ++ F        K+P  K   AL             T L+++Y   GD
Sbjct: 107 QFSSYGLGNQNEEIDFNFLFDSSTKTPFAKCLHALLVVAGKVQSIFISTRLVNLYANLGD 166

Query: 223 LEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDK-MKDEGMKPDSITFVALLL 281
           +  +   F +I +KDV TWN+MIS Y  +G   +A+  F + +    ++PD  TF  +L 
Sbjct: 167 VSLSRCTFDQIPQKDVYTWNSMISAYVHNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLK 226

Query: 282 ACN--------HAGLVDLGIQY----FDSMVNDY------GIAAK---------PDHYTC 314
           AC         H     LG Q+      S+++ Y      GIA              +  
Sbjct: 227 ACGTLVDGRRIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNA 286

Query: 315 MVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRL-DLAEFAAMNLFNLNPA 373
           M+  L + G   +A+D++ +M  +     F T++S   V  +L D++    ++L+ +   
Sbjct: 287 MISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHG 346

Query: 374 NAAGCYVQ--LANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRV 431
                +V   L N+YA     +D  +    M   +VV     SW    +++  +   D  
Sbjct: 347 LEFDLFVSNALINMYAKFGNLEDARKAFQQMFITDVV-----SW---NSIIAAYEQND-- 396

Query: 432 HPELVSIHEKLKELEKRMKLAGYVPDL 458
             + V+ H        +M+L G+ PDL
Sbjct: 397 --DPVTAHGFF----VKMQLNGFQPDL 417


>gi|297849104|ref|XP_002892433.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338275|gb|EFH68692.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 741

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 227/568 (39%), Positives = 330/568 (58%), Gaps = 48/568 (8%)

Query: 19  QRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMIS 78
           Q G+L+DA+++FD+ P  DVVSY  ++     +   + +A   F  +P+KD  SWN MIS
Sbjct: 181 QNGRLEDARKVFDRSPHRDVVSYTALIKG-YASRGYIESAQKLFDEIPVKDVVSWNAMIS 239

Query: 79  GFVQKKNMAKARDLFLAM------PEKNSV--------------------SW-------- 104
           G+ +  N  +A +LF  M      P+++++                    SW        
Sbjct: 240 GYAETGNYKEALELFKEMMKTNIRPDESTMVTVVSACAQSGSIELGRQVHSWIDDHGFGS 299

Query: 105 -----SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKL 159
                ++++  Y +CG+L+ A  LF+    K V++W  +I GY      +     + L L
Sbjct: 300 NLKIVNSLMDLYSKCGELETACGLFEGLLYKDVISWNTLIGGYTHMNLYK-----EALLL 354

Query: 160 LRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK--SPLCKDTTALTPLISMY 217
            + M+  G RPN  ++ S+L  C+HL ++ +G+ +H  + K        ++  T LI MY
Sbjct: 355 FQEMLRSGERPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKSATNASSLRTSLIDMY 414

Query: 218 CKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFV 277
            KCGD+E A ++F  I  K + +WNAMI G+A HG+ + A  +F +M+  G++PD ITFV
Sbjct: 415 AKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADAAFDIFSRMRKIGIEPDDITFV 474

Query: 278 ALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPF 337
            LL AC+ +G++DLG   F +M  DY I  K +HY CM+DLLG +G   EA ++I  M  
Sbjct: 475 GLLSACSRSGMLDLGRHIFRTMTQDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINNMEM 534

Query: 338 KPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVAR 397
           +P   I+ +LL AC++   ++L E  A NL  + P N  GCYV L+NIYA   +W++VA+
Sbjct: 535 EPDGVIWCSLLKACKIRGNVELGESFAQNLIKIEPENP-GCYVLLSNIYATAGRWNEVAK 593

Query: 398 IRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPD 457
           IR  + +  + K+PG S IE+ +VVHEF  GD+ HP    I+  L+E+E  ++ AG+VPD
Sbjct: 594 IRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFVPD 653

Query: 458 LEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISA 517
               L  + EE KE  L  HSEKLAIAFGLI    GT + + KNLRVC +CH ATK IS 
Sbjct: 654 TSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISK 713

Query: 518 IEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           I KREII RD TRFHHF+DG CSC DYW
Sbjct: 714 IYKREIIARDRTRFHHFRDGVCSCNDYW 741



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 78/253 (30%), Positives = 120/253 (47%), Gaps = 37/253 (14%)

Query: 117 LDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLS 176
           L  A+ +F+     +++ W  M  G+       +S     LKL   MI LG+ PN+ +  
Sbjct: 84  LPYAISVFETIQEPNLLIWNTMFRGH-----ALSSDPVSALKLYVCMISLGLLPNSYTFP 138

Query: 177 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA---------- 226
            +L  C+   + + G+Q+H  V K     D    T LIS+Y + G LEDA          
Sbjct: 139 FLLKSCAKSKAFKEGQQIHGHVLKLGYDLDLFVHTSLISVYVQNGRLEDARKVFDRSPHR 198

Query: 227 ---------------------CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMK 265
                                 KLF EI  KDVV+WNAMISGYA+ G  ++AL LF +M 
Sbjct: 199 DVVSYTALIKGYASRGYIESAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKEMM 258

Query: 266 DEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKL 325
              ++PD  T V ++ AC  +G ++LG Q   S ++D+G  +       ++DL  + G+L
Sbjct: 259 KTNIRPDESTMVTVVSACAQSGSIELGRQ-VHSWIDDHGFGSNLKIVNSLMDLYSKCGEL 317

Query: 326 VEAVDLIKKMPFK 338
             A  L + + +K
Sbjct: 318 ETACGLFEGLLYK 330


>gi|414873128|tpg|DAA51685.1| TPA: hypothetical protein ZEAMMB73_445170 [Zea mays]
          Length = 987

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 227/554 (40%), Positives = 338/554 (61%), Gaps = 20/554 (3%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKI-----PQPDVVSYNIMLSCI----LLNSDD 54
           ++ V+WN+++AG+  Q G    A + F ++      +PD  +   +LS      +L    
Sbjct: 442 RSIVSWNTIIAGY-NQNGLDGMALKFFSRMLSASSMEPDAFTVTSVLSACANLRMLKMGK 500

Query: 55  VVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLF--LAMPEKNSVSWSAMISGYI 112
            + ++     +P   +   N +IS + +  ++  AR +     + + N +S++A++ GY+
Sbjct: 501 QMHSYILRTGMPC-SSQIMNALISTYAKSGSVETARRIMDQAVVADLNVISFTALLEGYV 559

Query: 113 ECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNA 172
           + G   +A E+F +   + V+AWTAMI      GY +N   ++ ++L R MI +G  PN+
Sbjct: 560 KLGDTKQAREIFDIMNNRDVIAWTAMI-----VGYHQNGQNDEAMELFRSMILIGPEPNS 614

Query: 173 SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLE 232
            +L++VL  C+ L+ L  GKQ+H    +S   +  +    +I++Y + G +  A ++F +
Sbjct: 615 HTLAAVLSACASLAYLDYGKQIHCKAIRSLQEQSVSVSNAIITVYARSGSVPLARRVFDQ 674

Query: 233 I-QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDL 291
           I  RK+ +TW +MI   AQHG GE+A+ LF++M   G+KPD IT+V +L AC HAG VD 
Sbjct: 675 ICWRKETITWTSMIVAMAQHGLGEQAVVLFEEMVRVGVKPDHITYVGVLSACAHAGFVDK 734

Query: 292 GIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSAC 351
           G +Y++ M N++GI  +  HY CMVDL  RAG L EA + I++MP  P   ++G+LL+AC
Sbjct: 735 GKRYYEQMQNEHGIVPQMSHYACMVDLHARAGLLTEAHEFIQRMPVAPDTVVWGSLLAAC 794

Query: 352 RVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMP 411
           RV K  DLAE AA  L +++P N+ G Y  LAN+Y+A  +W+D ARI    K+  V K  
Sbjct: 795 RVRKNADLAELAAGKLLSIDPHNS-GAYSALANVYSACGRWNDAARIWKLRKDKGVKKET 853

Query: 412 GYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKE 471
           G+SW  V   VH F + D +HP+  SI+ K  E+ + +K AG+VPDL   LH V +E+KE
Sbjct: 854 GFSWTHVRGKVHVFGADDVLHPQRDSIYRKAAEMWEEIKKAGFVPDLNSVLHDVDDELKE 913

Query: 472 QLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRF 531
           +LL  HSEKLAIAFGLI  P  T +R+ KNLRVC DCH A K+IS    REIIVRD TRF
Sbjct: 914 ELLSRHSEKLAIAFGLISTPEKTTLRIMKNLRVCNDCHTAIKFISKFVDREIIVRDATRF 973

Query: 532 HHFKDGTCSCGDYW 545
           HHF+DG CSC DYW
Sbjct: 974 HHFRDGYCSCKDYW 987



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 87/330 (26%), Positives = 158/330 (47%), Gaps = 33/330 (10%)

Query: 81  VQKKNMAKARDLFLAMP--EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAM 138
           V +    +AR LF  +P   +N+ +W++++S Y + G+L  A  +F   P +  V+WT M
Sbjct: 259 VSRGCFREARCLFDDIPYARRNAFTWNSLLSLYAKSGRLPDAHVVFAEMPDRDAVSWTIM 318

Query: 139 ISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLV 198
           I G  + G     W  D +K    M+  G  P+  +L++VL  C+ + +  +G++VH  V
Sbjct: 319 IVGLNRSGRF---W--DAVKTFLDMVSEGFAPSQFTLTNVLSSCAAMEACGVGRKVHPFV 373

Query: 199 FKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKAL 258
            K  L         ++ MY KCGD E A  +F  +Q + V +WN M+S Y   G+ E A+
Sbjct: 374 VKLGLSSCVPVANSVLYMYGKCGDAETARAVFERMQVRSVSSWNVMVSLYTHQGRMELAV 433

Query: 259 RLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYT----- 313
            +F+ M +  +    +++  ++   N  GL  + +++F  M++   +  +PD +T     
Sbjct: 434 SMFENMVERSI----VSWNTIIAGYNQNGLDGMALKFFSRMLSASSM--EPDAFTVTSVL 487

Query: 314 --CMVDLLGRAGKLVEAVDLIKKMPFKPQP--------AIFGTLLSACRVHKRLDLAEFA 363
             C    + + GK + +  L   MP   Q         A  G++ +A R+   +D A  A
Sbjct: 488 SACANLRMLKMGKQMHSYILRTGMPCSSQIMNALISTYAKSGSVETARRI---MDQAVVA 544

Query: 364 AMNLFNLNPANAAGCYVQLANIYAAMKKWD 393
            +N+ +         YV+L +   A + +D
Sbjct: 545 DLNVISFTALLEG--YVKLGDTKQAREIFD 572



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 71/274 (25%), Positives = 120/274 (43%), Gaps = 68/274 (24%)

Query: 54  DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE 113
           D   A   F+R+ ++  +SWN M+S +  +  M  A  +F  M E++ VSW+ +I+GY +
Sbjct: 397 DAETARAVFERMQVRSVSSWNVMVSLYTHQGRMELAVSMFENMVERSIVSWNTIIAGYNQ 456

Query: 114 CGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNAS 173
            G    A++ F                                    RM+    + P+A 
Sbjct: 457 NGLDGMALKFFS-----------------------------------RMLSASSMEPDAF 481

Query: 174 SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK----- 228
           +++SVL  C++L  L++GKQ+H  + ++ +   +  +  LIS Y K G +E A +     
Sbjct: 482 TVTSVLSACANLRMLKMGKQMHSYILRTGMPCSSQIMNALISTYAKSGSVETARRIMDQA 541

Query: 229 ----------------------------LFLEIQRKDVVTWNAMISGYAQHGKGEKALRL 260
                                       +F  +  +DV+ W AMI GY Q+G+ ++A+ L
Sbjct: 542 VVADLNVISFTALLEGYVKLGDTKQAREIFDIMNNRDVIAWTAMIVGYHQNGQNDEAMEL 601

Query: 261 FDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ 294
           F  M   G +P+S T  A+L AC     +D G Q
Sbjct: 602 FRSMILIGPEPNSHTLAAVLSACASLAYLDYGKQ 635


>gi|356528130|ref|XP_003532658.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Glycine max]
          Length = 674

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 232/564 (41%), Positives = 336/564 (59%), Gaps = 46/564 (8%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G+L+ A  LFD++P+ +++S NIM+    L   ++ +A + F  +P ++ A+WN M++G 
Sbjct: 118 GELQAAVALFDRMPRRNIMSCNIMIKA-YLGMGNLESAKNLFDEMPDRNVATWNAMVTGL 176

Query: 81  VQKKNMAKARDLFLAMPE--------------KNSVSWSAMISG---------------- 110
            + +   +A  LF  M E              +      A+++G                
Sbjct: 177 TKFEMNEEALLLFSRMNELSFMPDEYSLGSVLRGCAHLGALLAGQQVHAYVMKCGFECNL 236

Query: 111 ---------YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLR 161
                    Y++ G +     +    P  S+VAW  ++SG  + GY E       L    
Sbjct: 237 VVGCSLAHMYMKAGSMHDGERVINWMPDCSLVAWNTLMSGKAQKGYFEGV-----LDQYC 291

Query: 162 MMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCG 221
           MM   G RP+  +  SV+  CS L+ L  GKQ+H    K+    + + ++ L+SMY +CG
Sbjct: 292 MMKMAGFRPDKITFVSVISSCSELAILCQGKQIHAEAVKAGASSEVSVVSSLVSMYSRCG 351

Query: 222 DLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLL 281
            L+D+ K FLE + +DVV W++MI+ Y  HG+GE+A++LF++M+ E +  + ITF++LL 
Sbjct: 352 CLQDSIKTFLECKERDVVLWSSMIAAYGFHGQGEEAIKLFNEMEQENLPGNEITFLSLLY 411

Query: 282 ACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQP 341
           AC+H GL D G+  FD MV  YG+ A+  HYTC+VDLLGR+G L EA  +I+ MP K   
Sbjct: 412 ACSHCGLKDKGLGLFDMMVKKYGLKARLQHYTCLVDLLGRSGCLEEAEAMIRSMPVKADA 471

Query: 342 AIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLS 401
            I+ TLLSAC++HK  ++A   A  +  ++P ++A  YV LANIY++  +W +V+ +R +
Sbjct: 472 IIWKTLLSACKIHKNAEIARRVADEVLRIDPQDSAS-YVLLANIYSSANRWQNVSEVRRA 530

Query: 402 MKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFA 461
           MK+  V K PG SW+EV   VH+F  GD  HP+ V I++ L+EL   +K  GYVPD    
Sbjct: 531 MKDKMVKKEPGISWVEVKNQVHQFHMGDECHPKHVEINQYLEELTSEIKRQGYVPDTSSV 590

Query: 462 LHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKR 521
           LH +  E KEQ+L  HSEKLAIAF L+  P G PIRV KNLRVC DCH A KYIS I+K 
Sbjct: 591 LHDMDNEEKEQILRHHSEKLAIAFALMNTPEGVPIRVMKNLRVCSDCHVAIKYISEIKKL 650

Query: 522 EIIVRDTTRFHHFKDGTCSCGDYW 545
           EIIVRD++RFHHFK+GTCSCGDYW
Sbjct: 651 EIIVRDSSRFHHFKNGTCSCGDYW 674



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 87/279 (31%), Positives = 135/279 (48%), Gaps = 10/279 (3%)

Query: 20  RGKLKDAQELF--DKIPQPDVVSYNIMLSCILLNSDDVVAAFD--FFQRLPIKDTASWNT 75
           +G +++A E F  +   +P + S N++ +CI L S  +        F      D    N 
Sbjct: 51  KGHIREAFESFLSEIWAEPRLFS-NLLQACIPLKSVSLGKQLHSLIFTSGCSSDKFISNH 109

Query: 76  MISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAW 135
           +++ + +   +  A  LF  MP +N +S + MI  Y+  G L+ A  LF   P ++V  W
Sbjct: 110 LLNLYSKFGELQAAVALFDRMPRRNIMSCNIMIKAYLGMGNLESAKNLFDEMPDRNVATW 169

Query: 136 TAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVH 195
            AM++G  KF        E+ L L   M  L   P+  SL SVL GC+HL +L  G+QVH
Sbjct: 170 NAMVTGLTKF-----EMNEEALLLFSRMNELSFMPDEYSLGSVLRGCAHLGALLAGQQVH 224

Query: 196 QLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGE 255
             V K     +      L  MY K G + D  ++   +    +V WN ++SG AQ G  E
Sbjct: 225 AYVMKCGFECNLVVGCSLAHMYMKAGSMHDGERVINWMPDCSLVAWNTLMSGKAQKGYFE 284

Query: 256 KALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ 294
             L  +  MK  G +PD ITFV+++ +C+   ++  G Q
Sbjct: 285 GVLDQYCMMKMAGFRPDKITFVSVISSCSELAILCQGKQ 323


>gi|15234831|ref|NP_194799.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75208664|sp|Q9SUH6.1|PP341_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g30700; AltName: Full=Protein DYW9
 gi|5725434|emb|CAB52443.1| putative protein [Arabidopsis thaliana]
 gi|7269971|emb|CAB79788.1| putative protein [Arabidopsis thaliana]
 gi|332660398|gb|AEE85798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 792

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 230/553 (41%), Positives = 324/553 (58%), Gaps = 37/553 (6%)

Query: 12  VLAGFAK---QRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRL--- 65
           VL GF     + GK+K    LF +  +PD+V+YN M+     N +  ++    F+ L   
Sbjct: 258 VLTGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTSNGETELS-LSLFKELMLS 316

Query: 66  -------------PIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYI 112
                        P+         I G+  K N       FL+     SVS +A+ + Y 
Sbjct: 317 GARLRSSTLVSLVPVSGHLMLIYAIHGYCLKSN-------FLSHA---SVS-TALTTVYS 365

Query: 113 ECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNA 172
           +  +++ A +LF  +P KS+ +W AMISGY      +N   ED + L R M      PN 
Sbjct: 366 KLNEIESARKLFDESPEKSLPSWNAMISGY-----TQNGLTEDAISLFREMQKSEFSPNP 420

Query: 173 SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLE 232
            +++ +L  C+ L +L LGK VH LV  +         T LI MY KCG + +A +LF  
Sbjct: 421 VTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDL 480

Query: 233 IQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 292
           + +K+ VTWN MISGY  HG+G++AL +F +M + G+ P  +TF+ +L AC+HAGLV  G
Sbjct: 481 MTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYACSHAGLVKEG 540

Query: 293 IQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACR 352
            + F+SM++ YG      HY CMVD+LGRAG L  A+  I+ M  +P  +++ TLL ACR
Sbjct: 541 DEIFNSMIHRYGFEPSVKHYACMVDILGRAGHLQRALQFIEAMSIEPGSSVWETLLGACR 600

Query: 353 VHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPG 412
           +HK  +LA   +  LF L+P N  G +V L+NI++A + +   A +R + K+  + K PG
Sbjct: 601 IHKDTNLARTVSEKLFELDPDN-VGYHVLLSNIHSADRNYPQAATVRQTAKKRKLAKAPG 659

Query: 413 YSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQ 472
           Y+ IE+G   H F SGD+ HP++  I+EKL++LE +M+ AGY P+ E ALH V EE +E 
Sbjct: 660 YTLIEIGETPHVFTSGDQSHPQVKEIYEKLEKLEGKMREAGYQPETELALHDVEEEEREL 719

Query: 473 LLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFH 532
           ++  HSE+LAIAFGLI    GT IR+ KNLRVC DCH  TK IS I +R I+VRD  RFH
Sbjct: 720 MVKVHSERLAIAFGLIATEPGTEIRIIKNLRVCLDCHTVTKLISKITERVIVVRDANRFH 779

Query: 533 HFKDGTCSCGDYW 545
           HFKDG CSCGDYW
Sbjct: 780 HFKDGVCSCGDYW 792



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 93/356 (26%), Positives = 166/356 (46%), Gaps = 24/356 (6%)

Query: 22  KLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK-----DTASWNTM 76
           +++DA+++FD++P+ D + +N M+S    N +  V +   F+ L  +     DT +   +
Sbjct: 169 RVEDARKVFDRMPEKDTILWNTMISGYRKN-EMYVESIQVFRDLINESCTRLDTTTLLDI 227

Query: 77  ISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYI----ECGQLDKAVELFKVAPVKSV 132
           +    + + +     +     +    S   +++G+I    +CG++     LF+      +
Sbjct: 228 LPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMGSALFREFRKPDI 287

Query: 133 VAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGK 192
           VA+ AMI GY   G  E S     L L + ++  G R  +S+L S++    H   L L  
Sbjct: 288 VAYNAMIHGYTSNGETELS-----LSLFKELMLSGARLRSSTLVSLVPVSGH---LMLIY 339

Query: 193 QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHG 252
            +H    KS      +  T L ++Y K  ++E A KLF E   K + +WNAMISGY Q+G
Sbjct: 340 AIHGYCLKSNFLSHASVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNG 399

Query: 253 KGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY 312
             E A+ LF +M+     P+ +T   +L AC   G + LG ++   +V      +     
Sbjct: 400 LTEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSLG-KWVHDLVRSTDFESSIYVS 458

Query: 313 TCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLF 368
           T ++ +  + G + EA  L   M  K     + T++S   +H +       A+N+F
Sbjct: 459 TALIGMYAKCGSIAEARRLFDLMT-KKNEVTWNTMISGYGLHGQGQ----EALNIF 509



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 90/371 (24%), Positives = 156/371 (42%), Gaps = 46/371 (12%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G +  A+++F  + +PDV  +N+++    +N +   ++   F  L        N+    F
Sbjct: 66  GAIYYARDIFLSVQRPDVFLFNVLMRGFSVN-ESPHSSLSVFAHLRKSTDLKPNSSTYAF 124

Query: 81  VQKKNMAKARDLFLAMPEKNSVS---------WSAMISGYIECGQLDKAVELFKVAPVKS 131
                     D    +    +V           S ++  Y +  +++ A ++F   P K 
Sbjct: 125 AISAASGFRDDRAGRVIHGQAVVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKD 184

Query: 132 VVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLG-IRPNASSLSSVLLGCSHLSSLQL 190
            + W  MISGY K     N    + +++ R +I     R + ++L  +L   + L  L+L
Sbjct: 185 TILWNTMISGYRK-----NEMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRL 239

Query: 191 GKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQ 250
           G Q+H L  K+        LT  IS+Y KCG ++    LF E ++ D+V +NAMI GY  
Sbjct: 240 GMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTS 299

Query: 251 HGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGL------------------VDLG 292
           +G+ E +L LF ++   G +  S T V+L+    H  L                  V   
Sbjct: 300 NGETELSLSLFKELMLSGARLRSSTLVSLVPVSGHLMLIYAIHGYCLKSNFLSHASVSTA 359

Query: 293 IQYFDSMVNDYGIAAK-----PD----HYTCMVDLLGRAGKLVEAVDLIKKM---PFKPQ 340
           +    S +N+   A K     P+     +  M+    + G   +A+ L ++M    F P 
Sbjct: 360 LTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPN 419

Query: 341 PAIFGTLLSAC 351
           P     +LSAC
Sbjct: 420 PVTITCILSAC 430



 Score = 40.4 bits (93), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 1/85 (1%)

Query: 193 QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHG 252
           Q H  +       D + LT L       G +  A  +FL +QR DV  +N ++ G++ + 
Sbjct: 38  QTHAQIILHGFRNDISLLTKLTQRLSDLGAIYYARDIFLSVQRPDVFLFNVLMRGFSVNE 97

Query: 253 KGEKALRLFDKM-KDEGMKPDSITF 276
               +L +F  + K   +KP+S T+
Sbjct: 98  SPHSSLSVFAHLRKSTDLKPNSSTY 122


>gi|225447043|ref|XP_002269269.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 640

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 214/454 (47%), Positives = 294/454 (64%), Gaps = 6/454 (1%)

Query: 92  LFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENS 151
           +F   PE +  SW+ MI GY++CG    A  +F+  P + VV+W+ MI+GY     V+ S
Sbjct: 193 VFDRTPECDGASWNIMIGGYLKCGVFKSARRMFEAMPDRDVVSWSVMINGY-----VQES 247

Query: 152 WAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALT 211
             ++GL L + M+G  I PN S L + L  C+HL +++ G+ + + + +  +       T
Sbjct: 248 RFKEGLGLFQDMMGEKIEPNESVLVNALSACAHLGAMEQGQWIERYMERKNVRLTVRLGT 307

Query: 212 PLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKP 271
            LI MY KCG +E A ++F +++ K+V+ W+AMI+G A +G+G+ AL LF +M+ +G+KP
Sbjct: 308 ALIDMYSKCGSVERALEVFHKMKEKNVLAWSAMINGLAINGQGKDALNLFSQMEMQGVKP 367

Query: 272 DSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDL 331
           + +TF+ +L AC+H+ LVD G  +F SM + YG+     H+ CMVDL GRAG L +A  +
Sbjct: 368 NEVTFIGILNACSHSKLVDEGCSFFHSMTSIYGLKPNAHHHCCMVDLYGRAGMLDQAQTV 427

Query: 332 IKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKK 391
           IK MPFKP  AI+G LL+ACR+H   +L E     L  L+P N  G YV L+NIYAA  +
Sbjct: 428 IKSMPFKPNSAIWGALLNACRIHGDTELGEQVGKRLLELDP-NHGGRYVLLSNIYAACGR 486

Query: 392 WDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKL 451
           WD VA +R  M+E  V K PG S+I++G  +HEF +GD  HP+L  I+ KL E+ + +K 
Sbjct: 487 WDRVAELRRMMRERQVSKTPGCSFIDLGDTIHEFVAGDSSHPQLEMIYAKLGEMSQELKA 546

Query: 452 AGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRA 511
           AGY PD    L  + EE KE  L  HSEKLAIAFGLIK   GT IR+ KNLRVC DCH A
Sbjct: 547 AGYKPDTGQVLLDMDEEEKETALCHHSEKLAIAFGLIKTDPGTTIRITKNLRVCADCHSA 606

Query: 512 TKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           TK IS I  REIIVRD  RFHHF+DG+CSC D+W
Sbjct: 607 TKLISKIYNREIIVRDRCRFHHFRDGSCSCMDFW 640



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/197 (25%), Positives = 88/197 (44%), Gaps = 32/197 (16%)

Query: 170 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA--- 226
           P+  +   +L  CS + SL+LG+ +H  VFK     + +    L+ MY  CG +E A   
Sbjct: 134 PDVHTFPLLLKACSEIPSLRLGEAIHSHVFKLGWSSEVSVSNFLVQMYASCGLIESAGLV 193

Query: 227 ---------------------CKLFLEIQR-------KDVVTWNAMISGYAQHGKGEKAL 258
                                C +F   +R       +DVV+W+ MI+GY Q  + ++ L
Sbjct: 194 FDRTPECDGASWNIMIGGYLKCGVFKSARRMFEAMPDRDVVSWSVMINGYVQESRFKEGL 253

Query: 259 RLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDL 318
            LF  M  E ++P+    V  L AC H G ++ G Q+ +  +    +       T ++D+
Sbjct: 254 GLFQDMMGEKIEPNESVLVNALSACAHLGAMEQG-QWIERYMERKNVRLTVRLGTALIDM 312

Query: 319 LGRAGKLVEAVDLIKKM 335
             + G +  A+++  KM
Sbjct: 313 YSKCGSVERALEVFHKM 329


>gi|449520177|ref|XP_004167110.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 226/548 (41%), Positives = 332/548 (60%), Gaps = 18/548 (3%)

Query: 9   WNSVLAGFAKQRGKLKDAQELFDKIP----QPDVVSYNIMLS-CILLNSDDV---VAAFD 60
           WN++++G+    G  ++A  L  K+     Q D ++Y  ++S C  + S  +   V A+ 
Sbjct: 257 WNAMISGYV-HCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQVHAYI 315

Query: 61  FFQRLPIKDT---ASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQL 117
               L    +   +  N +I+ + +   + +AR +F AMP +N ++W+A++SGY+  G++
Sbjct: 316 LKNELNPNHSFCLSVSNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGRM 375

Query: 118 DKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSS 177
           ++A   F+  PVK+++  T MISG       +N + ++GLKL + M   G  P   + + 
Sbjct: 376 EEAKSFFEEMPVKNLLTLTVMISGL-----AQNGFGDEGLKLFKQMRLDGFEPCDFAFAG 430

Query: 178 VLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKD 237
            L  CS L +L+ G+Q+H  +         +    +ISMY KCG +E A  +F+ +   D
Sbjct: 431 ALTACSVLGALENGRQLHAQLVHLGYESSLSVGNAMISMYAKCGVVEAAESVFVTMPSVD 490

Query: 238 VVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFD 297
           +V+WN+MI+   QHG G KA+ LFD+M  EG+ PD ITF+ +L AC+HAGLV+ G  YF+
Sbjct: 491 LVSWNSMIAALGQHGHGVKAIELFDQMLKEGVFPDRITFLTVLTACSHAGLVEKGRHYFN 550

Query: 298 SMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRL 357
           SM+  YGI    DHY  MVDL  RAG    A  +I  MP KP   ++  LL+ CR+H  +
Sbjct: 551 SMLESYGITPCEDHYARMVDLFCRAGMFSYARIVIDSMPSKPGAPVWEALLAGCRIHGNM 610

Query: 358 DLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIE 417
           DL   AA  LF L P N  G YV L+NIYA + +W++VA++R  M++  V K P  SWIE
Sbjct: 611 DLGIEAAEQLFKLMPQND-GTYVLLSNIYADVGRWNEVAKVRKLMRDQAVRKEPACSWIE 669

Query: 418 VGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFH 477
           V   VH F   D VHPE++S++  L++L   MK  GY+PD +F LH +  E KE  L  H
Sbjct: 670 VENKVHVFMVDDDVHPEVLSVYRYLEQLGLEMKKLGYIPDTKFVLHDMEYEQKEHALSTH 729

Query: 478 SEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDG 537
           SEKLA+ FG++K+P G  +RVFKN+R+CGDCH A K++S + +REIIVRD  RFHHFK+G
Sbjct: 730 SEKLAVGFGIMKLPPGATVRVFKNIRICGDCHNAFKFMSKVARREIIVRDRKRFHHFKNG 789

Query: 538 TCSCGDYW 545
            CSC DYW
Sbjct: 790 DCSCRDYW 797



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 96/365 (26%), Positives = 166/365 (45%), Gaps = 104/365 (28%)

Query: 55  VVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIEC 114
           +V+A   F  +P +D  +W TMI+G+V+  ++  AR++F AM E    +W+AMISGY+ C
Sbjct: 208 MVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAMVENLGAAWNAMISGYVHC 267

Query: 115 GQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASS 174
           G   +A                                    L L R M  LGI+ +  +
Sbjct: 268 GCFQEA------------------------------------LTLCRKMRFLGIQFDDIT 291

Query: 175 LSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKD----TTALTPLISMYCKCGDLEDACKLF 230
            ++++  C+++ S Q+GKQVH  + K+ L  +     +    LI++YCK   +++A K+F
Sbjct: 292 YTTIISACANVGSFQMGKQVHAYILKNELNPNHSFCLSVSNALITLYCKNNKVDEARKIF 351

Query: 231 LEIQRKDVVTWNAMISGY-------------------------------AQHGKGEKALR 259
             +  ++++TWNA++SGY                               AQ+G G++ L+
Sbjct: 352 YAMPVRNIITWNAILSGYVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLK 411

Query: 260 LFDKMKDEGMKPDSITFVALLLACN-----------HAGLVDLG----IQYFDSMVNDY- 303
           LF +M+ +G +P    F   L AC+           HA LV LG    +   ++M++ Y 
Sbjct: 412 LFKQMRLDGFEPCDFAFAGALTACSVLGALENGRQLHAQLVHLGYESSLSVGNAMISMYA 471

Query: 304 --GIAAKPD------------HYTCMVDLLGRAGKLVEAVDLIKKMPFK---PQPAIFGT 346
             G+    +             +  M+  LG+ G  V+A++L  +M  +   P    F T
Sbjct: 472 KCGVVEAAESVFVTMPSVDLVSWNSMIAALGQHGHGVKAIELFDQMLKEGVFPDRITFLT 531

Query: 347 LLSAC 351
           +L+AC
Sbjct: 532 VLTAC 536



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 78/314 (24%), Positives = 138/314 (43%), Gaps = 57/314 (18%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPV--KS 131
           N ++  + +  N+  AR LF  +P  ++++ + +I+ Y   G L+   E+F   P+  + 
Sbjct: 52  NRLLEMYCKSSNLVYARQLFEEIPNPDAIARTTLITAYCALGNLELGREIFNGTPLYMRD 111

Query: 132 VVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCS-HLSSLQL 190
            V + AMI+GY       N      L+L R M     RP+  + +SVL      + + Q 
Sbjct: 112 SVFYNAMITGY-----AHNGDGHSALELFRAMRRDDFRPDDFTFTSVLSALVLFVGNEQQ 166

Query: 191 GKQVHQLVFKSPL-CKDTTALTPLISMYCK--------CGDLEDACKLFLEIQRKDVVTW 241
             Q+H  V K+ + C  ++ L  L+S+Y K        C  +  A KLF E+ ++D +TW
Sbjct: 167 CGQMHCAVVKTGMGCVSSSVLNALLSVYVKRASELGISCSAMVSARKLFDEMPKRDELTW 226

Query: 242 NAMISGYAQH-------------------------------GKGEKALRLFDKMKDEGMK 270
             MI+GY ++                               G  ++AL L  KM+  G++
Sbjct: 227 TTMITGYVRNDDLNGAREVFEAMVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQ 286

Query: 271 PDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTC------MVDLLGRAGK 324
            D IT+  ++ AC + G   +G Q    ++ +      P+H  C      ++ L  +  K
Sbjct: 287 FDDITYTTIISACANVGSFQMGKQVHAYILKN---ELNPNHSFCLSVSNALITLYCKNNK 343

Query: 325 LVEAVDLIKKMPFK 338
           + EA  +   MP +
Sbjct: 344 VDEARKIFYAMPVR 357



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 65/280 (23%), Positives = 130/280 (46%), Gaps = 25/280 (8%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLN--SDDVVAA 58
           M V+  + WN++L+G+    G++++A+  F+++P  ++++  +M+S +  N   D+ +  
Sbjct: 354 MPVRNIITWNAILSGYVNA-GRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKL 412

Query: 59  F-----DFFQRLPIKDTASWNTM-ISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYI 112
           F     D F+        +     + G ++      A+ + L      SV  +AMIS Y 
Sbjct: 413 FKQMRLDGFEPCDFAFAGALTACSVLGALENGRQLHAQLVHLGYESSLSVG-NAMISMYA 471

Query: 113 ECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNA 172
           +CG ++ A  +F   P   +V+W +MI+   + G+         ++L   M+  G+ P+ 
Sbjct: 472 KCGVVEAAESVFVTMPSVDLVSWNSMIAALGQHGH-----GVKAIELFDQMLKEGVFPDR 526

Query: 173 SSLSSVLLGCSHLSSLQLGKQVHQLVFKS---PLCKDTTALTPLISMYCKCGDLEDACKL 229
            +  +VL  CSH   ++ G+     + +S     C+D  A   ++ ++C+ G    A  +
Sbjct: 527 ITFLTVLTACSHAGLVEKGRHYFNSMLESYGITPCEDHYA--RMVDLFCRAGMFSYARIV 584

Query: 230 FLEIQRK-DVVTWNAMISGYAQHGKG----EKALRLFDKM 264
              +  K     W A+++G   HG      E A +LF  M
Sbjct: 585 IDSMPSKPGAPVWEALLAGCRIHGNMDLGIEAAEQLFKLM 624



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/122 (35%), Positives = 64/122 (52%), Gaps = 6/122 (4%)

Query: 163 MIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGD 222
           MI  G +P    L+ +L      S+L   +Q+    F+     D  A T LI+ YC  G+
Sbjct: 39  MIASGFKPRGHFLNRLLEMYCKSSNLVYARQL----FEEIPNPDAIARTTLITAYCALGN 94

Query: 223 LEDACKLF--LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 280
           LE   ++F    +  +D V +NAMI+GYA +G G  AL LF  M+ +  +PD  TF ++L
Sbjct: 95  LELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSALELFRAMRRDDFRPDDFTFTSVL 154

Query: 281 LA 282
            A
Sbjct: 155 SA 156


>gi|224066034|ref|XP_002302000.1| predicted protein [Populus trichocarpa]
 gi|222843726|gb|EEE81273.1| predicted protein [Populus trichocarpa]
          Length = 797

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 227/554 (40%), Positives = 336/554 (60%), Gaps = 20/554 (3%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIP----QPDVVSYNIMLS------CILLNSD 53
           K  V WN++++G+A  RG   +A E+F K+     Q D  ++  ++S      C  L  +
Sbjct: 252 KLGVAWNAMISGYA-HRGLYLEAFEMFRKMIMSKIQLDEFTFTSVISVCANAGCFRLGKE 310

Query: 54  DVVAAFDFFQRLPIKDTA--SWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGY 111
            + A F      P  D A    N +I+ + +   +  A+++F  MPE++ VSW+ ++SGY
Sbjct: 311 -MHAYFLKTVANPAPDVAMPVNNALITFYWKCGKVDIAQEIFNKMPERDLVSWNIILSGY 369

Query: 112 IECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPN 171
           +    +D+A   F   P K++++W  MISG  + G+     AE+ LK    M   G  P 
Sbjct: 370 VNVRCMDEAKSFFNEMPEKNILSWIIMISGLAQIGF-----AEEALKFFNRMKLQGFEPC 424

Query: 172 ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFL 231
             + +  ++ CS L SL+ G+Q+H  V +       +A   LI+MY +CG ++ A  LF+
Sbjct: 425 DYAFAGAIISCSVLGSLKHGRQLHAQVVRYGYESSLSAGNALITMYARCGVVDAAHCLFI 484

Query: 232 EIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDL 291
            +   D ++WNAMI+   QHG+G +A+ LF++M  EG+ PD I+F+ ++ AC+HAGLV  
Sbjct: 485 NMPCVDAISWNAMIAALGQHGQGTQAIELFEEMLKEGILPDRISFLTVISACSHAGLVKE 544

Query: 292 GIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSAC 351
           G +YFDSM N YG+    +HY  ++DLL RAGK  EA ++++ MPF+P   I+  LL+ C
Sbjct: 545 GRKYFDSMHNVYGVNPDEEHYARIIDLLCRAGKFSEAKEVMESMPFEPGAPIWEALLAGC 604

Query: 352 RVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMP 411
           R+H  +DL   AA  LF L P +  G YV L+N+YA   +W+D+A++R  M++  V K P
Sbjct: 605 RIHGNIDLGIEAAERLFELKPQHD-GTYVLLSNMYAVAGQWNDMAKVRKLMRDRGVKKEP 663

Query: 412 GYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKE 471
           G SWIEV   VH F  GD  HPE+  I+  L++L   M+  GYVPD +  LH V  ++KE
Sbjct: 664 GCSWIEVENKVHSFLVGDANHPEVRQIYNYLEQLVLEMRKIGYVPDTKCVLHDVESDLKE 723

Query: 472 QLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRF 531
             L  HSEKLA+A+G +K+P G  +RVFKNLR+CGDCH A K++S +  REI+VRD  RF
Sbjct: 724 HELSTHSEKLAVAYGFMKLPHGATVRVFKNLRICGDCHNAFKFMSKVVGREIVVRDGKRF 783

Query: 532 HHFKDGTCSCGDYW 545
           HHF+DG CSCGDYW
Sbjct: 784 HHFRDGKCSCGDYW 797



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 88/312 (28%), Positives = 144/312 (46%), Gaps = 52/312 (16%)

Query: 70  TASWNTMISGFVQKKN---------MAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
           T+  N +IS +V+            MA+AR LF  MP ++ +SW+ +I+GY++   LD A
Sbjct: 183 TSVLNALISSYVKCAASPSAQSSSLMAEARKLFDEMPNRDELSWTTIITGYVKNNDLDAA 242

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFG-YVENSWAEDGLKLLRMMIGLGIRPNASSLSSVL 179
            E       K  VAW AMISGY   G Y+E        ++ R MI   I+ +  + +SV+
Sbjct: 243 KEFLNGTSKKLGVAWNAMISGYAHRGLYLE------AFEMFRKMIMSKIQLDEFTFTSVI 296

Query: 180 LGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTP----LISMYCKCGDLEDACKLFLEIQR 235
             C++    +LGK++H    K+          P    LI+ Y KCG ++ A ++F ++  
Sbjct: 297 SVCANAGCFRLGKEMHAYFLKTVANPAPDVAMPVNNALITFYWKCGKVDIAQEIFNKMPE 356

Query: 236 KDVVTWNAMISGY-------------------------------AQHGKGEKALRLFDKM 264
           +D+V+WN ++SGY                               AQ G  E+AL+ F++M
Sbjct: 357 RDLVSWNIILSGYVNVRCMDEAKSFFNEMPEKNILSWIIMISGLAQIGFAEEALKFFNRM 416

Query: 265 KDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGK 324
           K +G +P    F   +++C+  G +  G Q    +V  YG  +       ++ +  R G 
Sbjct: 417 KLQGFEPCDYAFAGAIISCSVLGSLKHGRQLHAQVVR-YGYESSLSAGNALITMYARCGV 475

Query: 325 LVEAVDLIKKMP 336
           +  A  L   MP
Sbjct: 476 VDAAHCLFINMP 487



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 70/280 (25%), Positives = 128/280 (45%), Gaps = 29/280 (10%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  +  V+WN +L+G+   R  + +A+  F+++P+ +++S+ IM+S  L        A  
Sbjct: 354 MPERDLVSWNIILSGYVNVRC-MDEAKSFFNEMPEKNILSWIIMISG-LAQIGFAEEALK 411

Query: 61  FFQRLPIK-----DTASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMISGY 111
           FF R+ ++     D A    +IS  V   ++   R L   +     E +  + +A+I+ Y
Sbjct: 412 FFNRMKLQGFEPCDYAFAGAIISCSVL-GSLKHGRQLHAQVVRYGYESSLSAGNALITMY 470

Query: 112 IECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPN 171
             CG +D A  LF   P    ++W AMI+   + G          ++L   M+  GI P+
Sbjct: 471 ARCGVVDAAHCLFINMPCVDAISWNAMIAALGQHGQ-----GTQAIELFEEMLKEGILPD 525

Query: 172 ASSLSSVLLGCSHLSSLQLGKQ----VHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC 227
             S  +V+  CSH   ++ G++    +H +   +P   D      +I + C+ G   +A 
Sbjct: 526 RISFLTVISACSHAGLVKEGRKYFDSMHNVYGVNP---DEEHYARIIDLLCRAGKFSEAK 582

Query: 228 KLFLEIQ-RKDVVTWNAMISGYAQHGK----GEKALRLFD 262
           ++   +        W A+++G   HG      E A RLF+
Sbjct: 583 EVMESMPFEPGAPIWEALLAGCRIHGNIDLGIEAAERLFE 622



 Score = 58.5 bits (140), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 72/153 (47%), Gaps = 18/153 (11%)

Query: 163 MIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGD 222
           MI  G +P    L+ ++   S  S L   +     +F      D  A T LI+ Y   GD
Sbjct: 39  MIASGFQPRGHILNRLIDIYSKSSKLNYAR----YLFDEIPQPDIVARTTLIAAYSAAGD 94

Query: 223 LEDACKLFLE--IQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 280
           L+ + K+F +  +  +D V +NAMI+ Y+ +  G  A+ LF  M+ +  +PD+ TF ++L
Sbjct: 95  LKLSRKIFSDTPLGMRDSVFYNAMITAYSHNHDGHAAIELFCDMQRDNFRPDNYTFTSVL 154

Query: 281 LA----------CN--HAGLVDLGIQYFDSMVN 301
            A          C   H  +V  G  +  S++N
Sbjct: 155 GALALVAEKEKHCQQLHCAVVKSGTGFVTSVLN 187



 Score = 48.1 bits (113), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 67/148 (45%), Gaps = 7/148 (4%)

Query: 168 IRPNASSLSSVLLGCSHLS--SLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLED 225
           IR  A+   S+L  C   S  S  L + VH  +  S        L  LI +Y K   L  
Sbjct: 7   IRTAANRYGSLLQICCLQSPISYSLARPVHAHMIASGFQPRGHILNRLIDIYSKSSKLNY 66

Query: 226 ACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNH 285
           A  LF EI + D+V    +I+ Y+  G  + + ++F      GM+ DS+ + A++ A +H
Sbjct: 67  ARYLFDEIPQPDIVARTTLIAAYSAAGDLKLSRKIFSDTP-LGMR-DSVFYNAMITAYSH 124

Query: 286 AGLVDLGIQYFDSMVNDYGIAAKPDHYT 313
                  I+ F  M  D     +PD+YT
Sbjct: 125 NHDGHAAIELFCDMQRD---NFRPDNYT 149


>gi|413919600|gb|AFW59532.1| hypothetical protein ZEAMMB73_249815 [Zea mays]
          Length = 886

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 234/598 (39%), Positives = 342/598 (57%), Gaps = 71/598 (11%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRL---- 65
           N+++  +AK  G + DA ++F+ +   DVVS+N M++     S +  AAF+ F+ +    
Sbjct: 298 NALIDTYAKC-GSMNDAVKVFNVMEFKDVVSWNAMVTG-YTQSGNFGAAFELFENMRKEN 355

Query: 66  -PIKDTASWNTMISGFVQKKNMAKARDLFLAM----PEKNSVS----------------- 103
            P+ D  +W+ +I+G+ Q+    +A D F  M     E NSV+                 
Sbjct: 356 IPL-DVITWSAVIAGYAQRGCSQEALDAFQQMILDGSEPNSVTIISLLSACASLGALSQG 414

Query: 104 ------------------------------WSAMISGYIECGQLDKAVELFKVAPVK--S 131
                                         ++A+I  Y +C     A  +F   P +  +
Sbjct: 415 MEIHAYSLKKCLLSLDNDFGGDGDGEDLMVYNALIDMYSKCRSFKAARSIFDSIPRRERN 474

Query: 132 VVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIG--LGIRPNASSLSSVLLGCSHLSSLQ 189
           VV WT MI GY ++G      + D LK+   MI     + PNA ++S +L+ C+HL++L+
Sbjct: 475 VVTWTVMIGGYAQYGD-----SNDALKIFSEMISKPYAVAPNAYTISCILMACAHLAALR 529

Query: 190 LGKQVHQLVFKSPLCKDTTALTP--LISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISG 247
           +GKQ+H  V +    + +       LI MY KCGD++ A  +F  + +++ V+W +M+SG
Sbjct: 530 MGKQIHAYVTRHHEYEPSVYFVANCLIDMYSKCGDVDTARNVFDSMPKRNEVSWTSMMSG 589

Query: 248 YAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAA 307
           Y  HG+G++AL +FDKM+  G  PD I+F+ LL AC+H+G+VD G+ YFD M  DY + A
Sbjct: 590 YGMHGRGKEALDIFDKMQKAGFVPDDISFLVLLYACSHSGMVDQGLNYFDIMRRDYDVVA 649

Query: 308 KPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNL 367
             +HY C++DLL R G+L +A   I++MP +P   I+  LLSACRVH  ++LAE+A   L
Sbjct: 650 SAEHYACVIDLLARCGRLDKAWKTIQEMPMEPSAVIWVALLSACRVHSNVELAEYALNKL 709

Query: 368 FNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRS 427
            N+   N  G Y  ++NIYA  ++W DVARIR  MK++ + K PG SW++       F  
Sbjct: 710 VNMKAEND-GSYTLISNIYANARRWKDVARIRQLMKKSGIKKRPGCSWVQGKKGTASFFV 768

Query: 428 GDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGL 487
           GDR HP    I+  L+ L  R+K+ GYVP+  FALH V +E K  LL  HSEKLA+A+GL
Sbjct: 769 GDRSHPLSPEIYSLLERLIGRIKVMGYVPETNFALHDVDDEEKNNLLSEHSEKLALAYGL 828

Query: 488 IKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           +    G PIR+ KNLRVCGDCH A  YIS I   EIIVRD++RFHHFK+G+CSCG YW
Sbjct: 829 LTTSPGCPIRITKNLRVCGDCHSAFTYISKIVDHEIIVRDSSRFHHFKNGSCSCGGYW 886



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 104/390 (26%), Positives = 181/390 (46%), Gaps = 45/390 (11%)

Query: 3   VKTTVNWNSVLAGFAKQRGKLKDAQELFDKIP----------QPDVVS-YNIMLSCILLN 51
           +   ++WNS++A   K     + A ELF ++           + D++S  NI+ +C  L 
Sbjct: 215 IDDVISWNSIVAAHVKGSNP-RTALELFSEMSMIVHEKATNERSDIISIVNILPACASLK 273

Query: 52  SDDVVAAFDFF--QRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMIS 109
           +   +     +  +     D    N +I  + +  +M  A  +F  M  K+ VSW+AM++
Sbjct: 274 ALPQIKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMNDAVKVFNVMEFKDVVSWNAMVT 333

Query: 110 GYIECGQLDKAVELFKVAPVKS----VVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIG 165
           GY + G    A ELF+    ++    V+ W+A+I+GY + G      +++ L   + MI 
Sbjct: 334 GYTQSGNFGAAFELFENMRKENIPLDVITWSAVIAGYAQRG-----CSQEALDAFQQMIL 388

Query: 166 LGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCK------------DTTALTPL 213
            G  PN+ ++ S+L  C+ L +L  G ++H    K  L              D      L
Sbjct: 389 DGSEPNSVTIISLLSACASLGALSQGMEIHAYSLKKCLLSLDNDFGGDGDGEDLMVYNAL 448

Query: 214 ISMYCKCGDLEDACKLFLEIQRKD--VVTWNAMISGYAQHGKGEKALRLFDKM--KDEGM 269
           I MY KC   + A  +F  I R++  VVTW  MI GYAQ+G    AL++F +M  K   +
Sbjct: 449 IDMYSKCRSFKAARSIFDSIPRRERNVVTWTVMIGGYAQYGDSNDALKIFSEMISKPYAV 508

Query: 270 KPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY---TCMVDLLGRAGKLV 326
            P++ T   +L+AC H   + +G Q    +   +    +P  Y    C++D+  + G + 
Sbjct: 509 APNAYTISCILMACAHLAALRMGKQIHAYVTRHH--EYEPSVYFVANCLIDMYSKCGDVD 566

Query: 327 EAVDLIKKMPFKPQPAIFGTLLSACRVHKR 356
            A ++   MP K     + +++S   +H R
Sbjct: 567 TARNVFDSMP-KRNEVSWTSMMSGYGMHGR 595



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 111/237 (46%), Gaps = 18/237 (7%)

Query: 98  EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKS---VVAWTAMISGYMKFGYVENSWAE 154
           E N    +A+++ Y  CG L+ A  +F     K    V++W ++++ ++K      S   
Sbjct: 181 ESNVFVCNALVAMYSRCGSLEDASLVFDEITRKGIDDVISWNSIVAAHVK-----GSNPR 235

Query: 155 DGLKLLRMMI------GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTT 208
             L+L   M           R +  S+ ++L  C+ L +L   K++H    ++    D  
Sbjct: 236 TALELFSEMSMIVHEKATNERSDIISIVNILPACASLKALPQIKEIHSYAIRNGTFADAF 295

Query: 209 ALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEG 268
               LI  Y KCG + DA K+F  ++ KDVV+WNAM++GY Q G    A  LF+ M+ E 
Sbjct: 296 VCNALIDTYAKCGSMNDAVKVFNVMEFKDVVSWNAMVTGYTQSGNFGAAFELFENMRKEN 355

Query: 269 MKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKL 325
           +  D IT+ A++      G     +  F  M+ D    ++P+  T ++ LL     L
Sbjct: 356 IPLDVITWSAVIAGYAQRGCSQEALDAFQQMILD---GSEPNSVT-IISLLSACASL 408



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 65/246 (26%), Positives = 116/246 (47%), Gaps = 21/246 (8%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI 164
           + +++ Y+ CG    A+ + +       V W  ++  ++K G+++ +     + +   M+
Sbjct: 87  TGVVASYLACGATKDALSVLERVTPSPAVWWNLLVREHIKEGHLDRA-----IGVSCRML 141

Query: 165 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 224
             G +P+  +L   L  C  L S   G+ +H L+  +    +      L++MY +CG LE
Sbjct: 142 RAGTKPDHFTLPYALKACGELPSYCCGRALHGLICCNGFESNVFVCNALVAMYSRCGSLE 201

Query: 225 DACKLFLEIQRK---DVVTWNAMISGYAQHGKGEKALRLFDKM------KDEGMKPDSIT 275
           DA  +F EI RK   DV++WN++++ + +      AL LF +M      K    + D I+
Sbjct: 202 DASLVFDEITRKGIDDVISWNSIVAAHVKGSNPRTALELFSEMSMIVHEKATNERSDIIS 261

Query: 276 FVALLLACNHAGLVDL-GIQYFDSMVNDYGIAAKPDHYTC--MVDLLGRAGKLVEAVDLI 332
            V +L AC  A L  L  I+   S     G  A  D + C  ++D   + G + +AV + 
Sbjct: 262 IVNILPAC--ASLKALPQIKEIHSYAIRNGTFA--DAFVCNALIDTYAKCGSMNDAVKVF 317

Query: 333 KKMPFK 338
             M FK
Sbjct: 318 NVMEFK 323



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 65/293 (22%), Positives = 120/293 (40%), Gaps = 51/293 (17%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDK-IPQPDVVSYN-IMLSCILLNSDDVVA---- 57
           +  V W  ++ G+A Q G   DA ++F + I +P  V+ N   +SCIL+    + A    
Sbjct: 473 RNVVTWTVMIGGYA-QYGDSNDALKIFSEMISKPYAVAPNAYTISCILMACAHLAALRMG 531

Query: 58  --AFDFFQRLPIKDTASW---NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYI 112
                +  R    + + +   N +I  + +  ++  AR++F +MP++N VSW++M+SGY 
Sbjct: 532 KQIHAYVTRHHEYEPSVYFVANCLIDMYSKCGDVDTARNVFDSMPKRNEVSWTSMMSGYG 591

Query: 113 ECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNA 172
             G+  +A+++F                                      M   G  P+ 
Sbjct: 592 MHGRGKEALDIFD------------------------------------KMQKAGFVPDD 615

Query: 173 SSLSSVLLGCSHLSSLQLGKQVHQLVFKS-PLCKDTTALTPLISMYCKCGDLEDACKLFL 231
            S   +L  CSH   +  G     ++ +   +         +I +  +CG L+ A K   
Sbjct: 616 ISFLVLLYACSHSGMVDQGLNYFDIMRRDYDVVASAEHYACVIDLLARCGRLDKAWKTIQ 675

Query: 232 EI-QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPD-SITFVALLLA 282
           E+      V W A++S    H   E A    +K+ +   + D S T ++ + A
Sbjct: 676 EMPMEPSAVIWVALLSACRVHSNVELAEYALNKLVNMKAENDGSYTLISNIYA 728


>gi|449470104|ref|XP_004152758.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
 gi|449504088|ref|XP_004162249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 225/556 (40%), Positives = 331/556 (59%), Gaps = 18/556 (3%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIP----QPDVVSYNIMLSC-----ILLN 51
           M  +  + WN++++G+    G  +DA  LF K+     Q D  +Y  ++S        L 
Sbjct: 249 MTEQPGIAWNAMISGYL-HHGLFEDALTLFRKMRLLGVQVDESTYTSVISACADGGFFLL 307

Query: 52  SDDVVAAFDFFQRLPIKD--TASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMIS 109
              V A     +  P +D   +  NT+I+ + +   +  AR +F  MP K+ ++W+ ++S
Sbjct: 308 GKQVHAYILKNELNPDRDFLLSVGNTLITLYWKYGKVDGARKIFYEMPVKDIITWNTLLS 367

Query: 110 GYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIR 169
           GY+  G++++A   F   P K+++ WT MISG       +N + E  LKL   M   G  
Sbjct: 368 GYVNAGRMEEAKSFFAQMPEKNLLTWTVMISGL-----AQNGFGEQALKLFNQMKLDGYE 422

Query: 170 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 229
           PN  + +  +  CS L +L+ G+Q+H  +         +    +I+MY +CG +E A  +
Sbjct: 423 PNDYAFAGAITACSVLGALENGRQLHAQIVHLGHDSTLSVGNAMITMYARCGIVEAARTM 482

Query: 230 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLV 289
           FL +   D V+WN+MI+   QHG G KA+ L+++M  EG+ PD  TF+ +L AC+HAGLV
Sbjct: 483 FLTMPFVDPVSWNSMIAALGQHGHGVKAIELYEQMLKEGILPDRRTFLTVLSACSHAGLV 542

Query: 290 DLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLS 349
           + G +YF+SM+ +YGIA   DHY  M+DL  RAGK  +A ++I  MPF+ +  I+  LL+
Sbjct: 543 EEGNRYFNSMLENYGIAPGEDHYARMIDLFCRAGKFSDAKNVIDSMPFEARAPIWEALLA 602

Query: 350 ACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVK 409
            CR H  +DL   AA  LF L P +  G YV L+N+YA++ +W+DVAR R  M++  V K
Sbjct: 603 GCRTHGNMDLGIEAAEKLFKLIPQHD-GTYVLLSNMYASLGRWNDVARTRKLMRDRGVKK 661

Query: 410 MPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEV 469
            P  SW EV   VH F   D VHPE++SI+  L++L   MK  GY+PD ++ LH +  E 
Sbjct: 662 EPACSWTEVENKVHVFLVDDTVHPEVLSIYNYLEKLNLEMKKIGYIPDTKYVLHDMESEH 721

Query: 470 KEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTT 529
           KE  L  HSEKLA+AFGL+K+P G  +RVFKNLR+CGDCH A K++S +  REI+VRD  
Sbjct: 722 KEYALSTHSEKLAVAFGLMKLPQGATVRVFKNLRICGDCHNAIKFMSKVVGREIVVRDGK 781

Query: 530 RFHHFKDGTCSCGDYW 545
           RFHHFK+G CSC +YW
Sbjct: 782 RFHHFKNGECSCRNYW 797



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 132/524 (25%), Positives = 219/524 (41%), Gaps = 149/524 (28%)

Query: 26  AQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPI--KDTASWNTMISGFVQK 83
           A++LFD+IPQPDV++   +++       ++  A + F   P+  +DT  +N MI+G+   
Sbjct: 67  ARKLFDEIPQPDVIARTTLITAYSA-LGNLKMAREIFNETPLDMRDTVFYNAMITGYSHM 125

Query: 84  KNMAKARDLFLAMPEKN----------------------------------------SVS 103
            +   A +LF AM   N                                           
Sbjct: 126 NDGHSAIELFRAMRWANFQPDDFTFASVLSASTLIFYDERQCGQMHGTVVKFGIEIFPAV 185

Query: 104 WSAMISGYIECG---------QLDKAVELFKVAPVKSVVAWTAMISGYMK---------- 144
            +A++S Y++C           +  A +LF   P ++   WT +I+GY++          
Sbjct: 186 LNALLSVYVKCASSPLVSSSSLMASARKLFDEMPKRNEFIWTTLITGYVRNGDLTGAREI 245

Query: 145 ----------------FGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSL 188
                            GY+ +   ED L L R M  LG++ + S+ +SV+  C+     
Sbjct: 246 LDTMTEQPGIAWNAMISGYLHHGLFEDALTLFRKMRLLGVQVDESTYTSVISACADGGFF 305

Query: 189 QLGKQVHQLVFKSPLCKDTTAL----TPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAM 244
            LGKQVH  + K+ L  D   L      LI++Y K G ++ A K+F E+  KD++TWN +
Sbjct: 306 LLGKQVHAYILKNELNPDRDFLLSVGNTLITLYWKYGKVDGARKIFYEMPVKDIITWNTL 365

Query: 245 ISGY-------------------------------AQHGKGEKALRLFDKMKDEGMKPDS 273
           +SGY                               AQ+G GE+AL+LF++MK +G +P+ 
Sbjct: 366 LSGYVNAGRMEEAKSFFAQMPEKNLLTWTVMISGLAQNGFGEQALKLFNQMKLDGYEPND 425

Query: 274 ITFVALLLACN-----------HAGLVDLG----IQYFDSMVNDY---GI--AAK----- 308
             F   + AC+           HA +V LG    +   ++M+  Y   GI  AA+     
Sbjct: 426 YAFAGAITACSVLGALENGRQLHAQIVHLGHDSTLSVGNAMITMYARCGIVEAARTMFLT 485

Query: 309 -----PDHYTCMVDLLGRAGKLVEAVDLIKKM---PFKPQPAIFGTLLSACRVHKRLDLA 360
                P  +  M+  LG+ G  V+A++L ++M      P    F T+LSAC     ++  
Sbjct: 486 MPFVDPVSWNSMIAALGQHGHGVKAIELYEQMLKEGILPDRRTFLTVLSACSHAGLVEEG 545

Query: 361 E--FAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSM 402
              F +M L N   A     Y ++ +++    K+ D   +  SM
Sbjct: 546 NRYFNSM-LENYGIAPGEDHYARMIDLFCRAGKFSDAKNVIDSM 588



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 90/340 (26%), Positives = 153/340 (45%), Gaps = 23/340 (6%)

Query: 48  ILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP--EKNSVSWS 105
           I   S D V A   F  +P  D  +  T+I+ +    N+  AR++F   P   +++V ++
Sbjct: 57  IYWKSSDFVYARKLFDEIPQPDVIARTTLITAYSALGNLKMAREIFNETPLDMRDTVFYN 116

Query: 106 AMISGYIECGQLDKAVELFKVAPVKSV----VAWTAMISGYMKFGYVENSWAEDGLKLLR 161
           AMI+GY        A+ELF+     +       + +++S      Y E    +    +++
Sbjct: 117 AMITGYSHMNDGHSAIELFRAMRWANFQPDDFTFASVLSASTLIFYDERQCGQMHGTVVK 176

Query: 162 MMIGLGIRPNA-SSLSSVLLGCSHLSSLQLGKQVH--QLVFKSPLCKDTTALTPLISMYC 218
              G+ I P   ++L SV + C+    +     +   + +F     ++    T LI+ Y 
Sbjct: 177 --FGIEIFPAVLNALLSVYVKCASSPLVSSSSLMASARKLFDEMPKRNEFIWTTLITGYV 234

Query: 219 KCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVA 278
           + GDL  A ++   +  +  + WNAMISGY  HG  E AL LF KM+  G++ D  T+ +
Sbjct: 235 RNGDLTGAREILDTMTEQPGIAWNAMISGYLHHGLFEDALTLFRKMRLLGVQVDESTYTS 294

Query: 279 LLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDH------YTCMVDLLGRAGKLVEAVDLI 332
           ++ AC   G   LG Q    ++ +      PD          ++ L  + GK+  A  + 
Sbjct: 295 VISACADGGFFLLGKQVHAYILKN---ELNPDRDFLLSVGNTLITLYWKYGKVDGARKIF 351

Query: 333 KKMPFKPQPAIFGTLLSACRVHKRLDLAE--FAAMNLFNL 370
            +MP K     + TLLS      R++ A+  FA M   NL
Sbjct: 352 YEMPVK-DIITWNTLLSGYVNAGRMEEAKSFFAQMPEKNL 390



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 63/163 (38%), Gaps = 45/163 (27%)

Query: 184 HLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVT--- 240
           +LSS  L + VH  V  S        +  LI +Y K  D   A KLF EI + DV+    
Sbjct: 25  NLSSYSLARTVHGHVIASGFKLRGHIVNRLIDIYWKSSDFVYARKLFDEIPQPDVIARTT 84

Query: 241 ------------------------------WNAMISGYAQHGKGEKALRLFDKMKDEGMK 270
                                         +NAMI+GY+    G  A+ LF  M+    +
Sbjct: 85  LITAYSALGNLKMAREIFNETPLDMRDTVFYNAMITGYSHMNDGHSAIELFRAMRWANFQ 144

Query: 271 PDSITFVALLLACN------------HAGLVDLGIQYFDSMVN 301
           PD  TF ++L A              H  +V  GI+ F +++N
Sbjct: 145 PDDFTFASVLSASTLIFYDERQCGQMHGTVVKFGIEIFPAVLN 187


>gi|359485813|ref|XP_003633340.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 679

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 226/526 (42%), Positives = 314/526 (59%), Gaps = 8/526 (1%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G++  A+++FD +   DVV +N ++        ++  A   F+ +P +D  SW  ++ G 
Sbjct: 161 GEIDCARKVFDGMIDKDVVLWNSLIDG-YARCGEIDIALQLFEEMPERDAFSWTVLVDGL 219

Query: 81  VQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMIS 140
            +   +  AR LF  MP +N VSW+AMI+GY++ G  D A+ELF   P+  +V W  MI+
Sbjct: 220 SKCGKVESARKLFDQMPCRNLVSWNAMINGYMKSGDFDSALELFYQMPIWDLVTWNLMIA 279

Query: 141 GYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK 200
           GY       N    D +K+  MM+ LG RP+ ++L SVL   S L+ L  G+ +H  + K
Sbjct: 280 GYEL-----NGQFMDAVKMFFMMLKLGSRPSHATLVSVLSAVSGLAVLGKGRWIHSYMEK 334

Query: 201 SPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRL 260
           +    D    T LI MY KCG +E A  +F  IQ+K V  W A+I G   HG    AL L
Sbjct: 335 NGFELDGILGTSLIEMYAKCGCIESALTVFRAIQKKKVGHWTAIIVGLGIHGMANHALAL 394

Query: 261 FDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLG 320
           F +M   G+KP++I F+ +L ACNHAGLVD G QYFD M+N+Y I    +HY C+VD+L 
Sbjct: 395 FLEMCKTGLKPNAIIFIGVLNACNHAGLVDDGRQYFDMMMNEYKIEPTLEHYGCLVDILC 454

Query: 321 RAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYV 380
           RAG L EA + I+ MP  P   I+ +LL   R H ++D+ E+AA  +  + P    GCY+
Sbjct: 455 RAGHLEEAKNTIENMPISPNKVIWMSLLGGSRNHGKIDIGEYAAQRVIEVAP-ETIGCYI 513

Query: 381 QLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHE 440
            L+N+YAA   W+ V+ +R  M +    K PG S +E    +HEF  GD  HP+   I+ 
Sbjct: 514 LLSNMYAASGMWEKVSHVREMMYKRGFRKDPGCSSVEHKGTLHEFIVGDISHPQTKEIYA 573

Query: 441 KLKELEKRMKLAGYVPDLEFALHAV-GEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVF 499
           K+ E+++++K  G+VPD    L  + GE+ KE  L  HSE+LAIAFGLI V  G PIR+ 
Sbjct: 574 KMSEMKEKLKCVGHVPDTTQVLLCIEGEKEKEAELENHSERLAIAFGLINVKPGIPIRIM 633

Query: 500 KNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           KNLRVC DCH  TK +S I  REIIVRD  RFHHFK+G+CSC DYW
Sbjct: 634 KNLRVCNDCHSVTKLLSKIYSREIIVRDNCRFHHFKNGSCSCMDYW 679



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 65/220 (29%), Positives = 115/220 (52%), Gaps = 15/220 (6%)

Query: 117 LDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLS 176
           L  A  +F     +S++ W  +I  Y     VEN ++ DG+ L   ++   + P+  +L 
Sbjct: 63  LGYARSIFDRIQRRSLIHWNTIIKCY-----VENQFSHDGIVLFHELVHEYL-PDNFTLP 116

Query: 177 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK 236
            V+ GC+ L  +Q GKQ+H L  K     D      L++MY KCG+++ A K+F  +  K
Sbjct: 117 CVIKGCARLGVVQEGKQIHGLALKIGFGSDVFVQGSLVNMYSKCGEIDCARKVFDGMIDK 176

Query: 237 DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYF 296
           DVV WN++I GYA+ G+ + AL+LF++M +     D+ ++  L+   +  G V+   + F
Sbjct: 177 DVVLWNSLIDGYARCGEIDIALQLFEEMPER----DAFSWTVLVDGLSKCGKVESARKLF 232

Query: 297 DSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 336
           D M     ++     +  M++   ++G    A++L  +MP
Sbjct: 233 DQMPCRNLVS-----WNAMINGYMKSGDFDSALELFYQMP 267



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 74/294 (25%), Positives = 127/294 (43%), Gaps = 48/294 (16%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  +   +W  ++ G +K  GK++ A++LFD++P  ++VS+N M++   + S D  +A +
Sbjct: 204 MPERDAFSWTVLVDGLSKC-GKVESARKLFDQMPCRNLVSWNAMING-YMKSGDFDSALE 261

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM------------------------ 96
            F ++PI D  +WN MI+G+        A  +F  M                        
Sbjct: 262 LFYQMPIWDLVTWNLMIAGYELNGQFMDAVKMFFMMLKLGSRPSHATLVSVLSAVSGLAV 321

Query: 97  ----------PEKN-----SVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISG 141
                      EKN      +  +++I  Y +CG ++ A+ +F+    K V  WTA+I G
Sbjct: 322 LGKGRWIHSYMEKNGFELDGILGTSLIEMYAKCGCIESALTVFRAIQKKKVGHWTAIIVG 381

Query: 142 YMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKS 201
               G      A   L L   M   G++PNA     VL  C+H   +  G+Q   ++   
Sbjct: 382 LGIHGM-----ANHALALFLEMCKTGLKPNAIIFIGVLNACNHAGLVDDGRQYFDMMMNE 436

Query: 202 PLCKDTTA-LTPLISMYCKCGDLEDACKLFLEIQ-RKDVVTWNAMISGYAQHGK 253
              + T      L+ + C+ G LE+A      +    + V W +++ G   HGK
Sbjct: 437 YKIEPTLEHYGCLVDILCRAGHLEEAKNTIENMPISPNKVIWMSLLGGSRNHGK 490



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 79/323 (24%), Positives = 150/323 (46%), Gaps = 28/323 (8%)

Query: 26  AQELFDKIPQPDVVSYNIMLSCILLN--SDDVVAAFDFFQRLPIKDTASWNTMISG---- 79
           A+ +FD+I +  ++ +N ++ C + N  S D +  F       + D  +   +I G    
Sbjct: 66  ARSIFDRIQRRSLIHWNTIIKCYVENQFSHDGIVLFHELVHEYLPDNFTLPCVIKGCARL 125

Query: 80  -FVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAM 138
             VQ+        L +       V  S +++ Y +CG++D A ++F     K VV W ++
Sbjct: 126 GVVQEGKQIHGLALKIGFGSDVFVQGS-LVNMYSKCGEIDCARKVFDGMIDKDVVLWNSL 184

Query: 139 ISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLL--GCSHLSSLQLGKQVHQ 196
           I GY + G ++ +     L+L   M      P   + S  +L  G S    ++  ++   
Sbjct: 185 IDGYARCGEIDIA-----LQLFEEM------PERDAFSWTVLVDGLSKCGKVESARK--- 230

Query: 197 LVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEK 256
            +F    C++  +   +I+ Y K GD + A +LF ++   D+VTWN MI+GY  +G+   
Sbjct: 231 -LFDQMPCRNLVSWNAMINGYMKSGDFDSALELFYQMPIWDLVTWNLMIAGYELNGQFMD 289

Query: 257 ALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGI-QYFDSMVNDYGIAAKPDHYTCM 315
           A+++F  M   G +P   T V++L A   +GL  LG  ++  S +   G        T +
Sbjct: 290 AVKMFFMMLKLGSRPSHATLVSVLSAV--SGLAVLGKGRWIHSYMEKNGFELDGILGTSL 347

Query: 316 VDLLGRAGKLVEAVDLIKKMPFK 338
           +++  + G +  A+ + + +  K
Sbjct: 348 IEMYAKCGCIESALTVFRAIQKK 370



 Score = 47.4 bits (111), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 42/184 (22%), Positives = 76/184 (41%), Gaps = 33/184 (17%)

Query: 185 LSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYC--KCGDLEDACKLFLEIQRKDVVTWN 242
           L + Q  +Q+H    K+ +       + L+++Y   K  DL  A  +F  IQR+ ++ WN
Sbjct: 23  LCAPQEVEQLHAFSLKTAIFNHPFVSSRLLALYSDPKINDLGYARSIFDRIQRRSLIHWN 82

Query: 243 AMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYF------ 296
            +I  Y ++      + LF ++  E + PD+ T   ++  C   G+V  G Q        
Sbjct: 83  TIIKCYVENQFSHDGIVLFHELVHEYL-PDNFTLPCVIKGCARLGVVQEGKQIHGLALKI 141

Query: 297 ---------DSMVNDYGIAAKPDH---------------YTCMVDLLGRAGKLVEAVDLI 332
                     S+VN Y    + D                +  ++D   R G++  A+ L 
Sbjct: 142 GFGSDVFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLIDGYARCGEIDIALQLF 201

Query: 333 KKMP 336
           ++MP
Sbjct: 202 EEMP 205


>gi|297821407|ref|XP_002878586.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324425|gb|EFH54845.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 786

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 244/563 (43%), Positives = 327/563 (58%), Gaps = 32/563 (5%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELF-----DKIPQPDVVSYNIMLS--------C 47
           M  +  V WNS+++G+  QRG    A ++F     D +  PD  +   +LS        C
Sbjct: 238 MAERDIVTWNSMISGY-NQRGYDLRALDMFSKMLRDSMLSPDRFTLASVLSACANLEKLC 296

Query: 48  I--LLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKN--SVS 103
           I   ++S  V   FD             N +IS + +   +  AR L      K+     
Sbjct: 297 IGEQIHSHIVTTGFDI-------SGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEG 349

Query: 104 WSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMM 163
           ++A++ GYI+ G +++A  +F     + VVAWTAMI GY + G        + + L R M
Sbjct: 350 FTALLDGYIKLGDMNEAKNIFDSLKDRDVVAWTAMIVGYEQHGLYG-----EAINLFRSM 404

Query: 164 IGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDL 223
           +G   RPN+ +L+++L   S L+SL  GKQ+H    KS      +    LI+MY K G +
Sbjct: 405 VGEEQRPNSYTLAAMLSVASSLASLGHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGSI 464

Query: 224 EDACKLFLEIQ-RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA 282
             A + F  I+  +D V+W +MI   AQHG  E+AL LF+ M  EG++PD IT+V +  A
Sbjct: 465 TSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSA 524

Query: 283 CNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPA 342
           C HAGLV+ G QYFD M +   I     HY CMVDL GRAG L EA + I+KMP +P   
Sbjct: 525 CTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVV 584

Query: 343 IFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSM 402
            +G+LLSACRV+K +DL + AA  L  L P N+ G Y  LAN+Y+A  KW++ A+IR SM
Sbjct: 585 TWGSLLSACRVYKNIDLGKVAAERLLLLEPENS-GAYSALANLYSACGKWEEAAKIRKSM 643

Query: 403 KENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFAL 462
           K+  V K  G+SWIEV   VH F   D +HP+   I+  +K++   +K  GYVPD    L
Sbjct: 644 KDGRVKKEQGFSWIEVKHKVHAFGVEDGIHPQKNEIYITMKKIWDEIKKMGYVPDTASVL 703

Query: 463 HAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKRE 522
           H + EEVKEQ+L  HSEKLAIAFGLI  P  T +R+ KNLRVC DCH A K+IS +  RE
Sbjct: 704 HDLEEEVKEQILRHHSEKLAIAFGLISTPDKTTLRIMKNLRVCNDCHTAIKFISKLVGRE 763

Query: 523 IIVRDTTRFHHFKDGTCSCGDYW 545
           IIVRDTTRFHHFKDG CSC DYW
Sbjct: 764 IIVRDTTRFHHFKDGFCSCRDYW 786



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 111/411 (27%), Positives = 184/411 (44%), Gaps = 88/411 (21%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIML--------------- 45
           M ++T  +WN+VL+ +AK RG +  + E FD++PQ D VS+  M+               
Sbjct: 75  MPLRTAFSWNTVLSAYAK-RGDMDSSCEFFDRLPQRDSVSWTTMIVGYKNIGQYHKAIRI 133

Query: 46  ------------SCILLNSDDVVAA----------FDFFQRLPIKDTAS-WNTMISGFVQ 82
                          L N    VAA            F  +L ++   S  N++++ + +
Sbjct: 134 MGEMMREGIEPSQFTLTNVLASVAATRCLETGKKVHSFIVKLGLRGNVSVSNSLLNMYAK 193

Query: 83  KKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGY 142
             +   A+ +F  M  K+  SW+AMI+ +++ GQ+D A+  F+    + +V W +MISGY
Sbjct: 194 CGDPMMAKVVFDRMVVKDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGY 253

Query: 143 MKFGYVENSWAEDGL-KLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKS 201
            + GY  +  A D   K+LR  +   + P+  +L+SVL  C++L  L +G+Q+H  +  +
Sbjct: 254 NQRGY--DLRALDMFSKMLRDSM---LSPDRFTLASVLSACANLEKLCIGEQIHSHIVTT 308

Query: 202 PLCKDTTALTPLISMYCKC---------------------------------GDLEDACK 228
                   L  LISMY +C                                 GD+ +A  
Sbjct: 309 GFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNEAKN 368

Query: 229 LFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGL 288
           +F  ++ +DVV W AMI GY QHG   +A+ LF  M  E  +P+S T  A+L   +    
Sbjct: 369 IFDSLKDRDVVAWTAMIVGYEQHGLYGEAINLFRSMVGEEQRPNSYTLAAMLSVASSLAS 428

Query: 289 VDLGIQYFDSMVND---YGIAAKPDHYTCMVDLLGRAGKLV---EAVDLIK 333
           +  G Q   S V     Y ++        ++ +  +AG +     A DLI+
Sbjct: 429 LGHGKQIHGSAVKSGEIYSVSVS----NALITMYAKAGSITSASRAFDLIR 475



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 80/293 (27%), Positives = 136/293 (46%), Gaps = 38/293 (12%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVV 133
           N +++ + +      AR LF  MP + + SW+ ++S Y + G +D + E F   P +  V
Sbjct: 53  NNLMNVYSKTGYALHARKLFDEMPLRTAFSWNTVLSAYAKRGDMDSSCEFFDRLPQRDSV 112

Query: 134 AWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ 193
           +WT MI GY   G    +     ++++  M+  GI P+  +L++VL   +    L+ GK+
Sbjct: 113 SWTTMIVGYKNIGQYHKA-----IRIMGEMMREGIEPSQFTLTNVLASVAATRCLETGKK 167

Query: 194 VHQLVFKSPLCKDTTALTPLISMYCKCGD------------------------------- 222
           VH  + K  L  + +    L++MY KCGD                               
Sbjct: 168 VHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKVVFDRMVVKDISSWNAMIALHMQVGQ 227

Query: 223 LEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKM-KDEGMKPDSITFVALLL 281
           ++ A   F ++  +D+VTWN+MISGY Q G   +AL +F KM +D  + PD  T  ++L 
Sbjct: 228 MDLAMAQFEQMAERDIVTWNSMISGYNQRGYDLRALDMFSKMLRDSMLSPDRFTLASVLS 287

Query: 282 ACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKK 334
           AC +   + +G Q    +V   G          ++ +  R G +  A  LI++
Sbjct: 288 ACANLEKLCIGEQIHSHIVTT-GFDISGIVLNALISMYSRCGGVETARRLIEQ 339



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 72/152 (47%), Gaps = 15/152 (9%)

Query: 170 PNASSLSSVLLGCSHLSSLQLGKQ--------VHQLVFKSPLCKDTTALTPLISMYCKCG 221
           P   SLS++L  C++L    + K         VH  V KS L      +  L+++Y K G
Sbjct: 4   PVPLSLSTLLELCTNLLQKSVNKSNGRFTAQLVHCRVIKSGLVFSVYLMNNLMNVYSKTG 63

Query: 222 DLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLL 281
               A KLF E+  +   +WN ++S YA+ G  + +   FD++     + DS+++  +++
Sbjct: 64  YALHARKLFDEMPLRTAFSWNTVLSAYAKRGDMDSSCEFFDRLP----QRDSVSWTTMIV 119

Query: 282 ACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYT 313
              + G     I+    M+ + GI  +P  +T
Sbjct: 120 GYKNIGQYHKAIRIMGEMMRE-GI--EPSQFT 148


>gi|359483488|ref|XP_002273710.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 933

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 228/523 (43%), Positives = 310/523 (59%), Gaps = 45/523 (8%)

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWS------------ 105
           F  LP KD  +WN +ISG+ Q     +A  LF+ M ++    N  + S            
Sbjct: 417 FNLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVV 476

Query: 106 -----------------------AMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGY 142
                                  ++I  Y +C  ++ A  +F+   +  +V++T+MI+ Y
Sbjct: 477 HVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAY 536

Query: 143 MKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSP 202
            ++G       E+ LKL   M  + ++P+    SS+L  C++LS+ + GKQ+H  + K  
Sbjct: 537 AQYGQ-----GEEALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQLHVHILKYG 591

Query: 203 LCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFD 262
              D  A   L++MY KCG ++DA + F E+  + +V+W+AMI G AQHG G +AL+LF+
Sbjct: 592 FVLDIFAGNSLVNMYAKCGSIDDAGRAFSELTERGIVSWSAMIGGLAQHGHGRQALQLFN 651

Query: 263 KMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRA 322
           +M  EG+ P+ IT V++L ACNHAGLV     YF+SM   +G     +HY CM+DLLGRA
Sbjct: 652 QMLKEGVSPNHITLVSVLGACNHAGLVTEAKLYFESMEELFGFKPMQEHYACMIDLLGRA 711

Query: 323 GKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQL 382
           GK+ EAV+L+ KMPF+   +++G LL A R+HK ++L   AA  LF L P   +G +V L
Sbjct: 712 GKINEAVELVNKMPFEANASVWGALLGAARIHKDVELGRRAAEMLFILEP-EKSGTHVLL 770

Query: 383 ANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKL 442
           ANIYA+  KW++VA +R  M+++ V K PG SWIEV   V+ F  GDR H     I+ KL
Sbjct: 771 ANIYASAGKWENVAEVRRLMRDSKVKKEPGMSWIEVKDKVYTFLVGDRSHYRSQEIYAKL 830

Query: 443 KELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNL 502
            EL   M  AGYVP +E  LH V +  KE LL  HSEKLA+AFGLI  P G PIRV KNL
Sbjct: 831 DELSDLMDKAGYVPMVEIDLHDVEQSEKELLLYHHSEKLAVAFGLIATPQGAPIRVKKNL 890

Query: 503 RVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           RVC DCH A KYI  I  REIIVRD  RFHHFKDG+CSCGDYW
Sbjct: 891 RVCVDCHTAFKYICKIVSREIIVRDINRFHHFKDGSCSCGDYW 933



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 109/440 (24%), Positives = 199/440 (45%), Gaps = 48/440 (10%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK- 68
           N+++  +AK   +  D++ LFD+IP+ +VVS+N + SC  +  D    A   F  + +  
Sbjct: 196 NTLVVMYAKC-DEFLDSKRLFDEIPERNVVSWNALFSC-YVQIDFCGEAVGLFYEMVLSG 253

Query: 69  ---DTASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMISGYIECGQLDKAV 121
              +  S ++M++     ++ ++ + +   +     + +  S +A++  Y + G L  A+
Sbjct: 254 IKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAI 313

Query: 122 ELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLG 181
            +F+      +V+W A+I+G      V +   E  L+LL  M   GI PN  +LSS L  
Sbjct: 314 SVFEKIKQPDIVSWNAVIAGC-----VLHEHHEQALELLGQMKRSGICPNIFTLSSALKA 368

Query: 182 CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTW 241
           C+ +   +LG+Q+H  + K  +  D      L+ MY KC  LEDA   F  +  KD++ W
Sbjct: 369 CAGMGLKELGRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAW 428

Query: 242 NAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDL---------- 291
           NA+ISGY+Q+ +  +AL LF +M  EG+  +  T   +L +     +V +          
Sbjct: 429 NAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVK 488

Query: 292 -----GIQYFDSMVNDYGIAAKPD---------------HYTCMVDLLGRAGKLVEAVDL 331
                 I   +S+++ YG  +  +                +T M+    + G+  EA+ L
Sbjct: 489 SGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKL 548

Query: 332 ---IKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAA 388
              ++ M  KP   +  +LL+AC      +  +   +++              L N+YA 
Sbjct: 549 FLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQLHVHILKYGFVLDIFAGNSLVNMYAK 608

Query: 389 MKKWDDVARIRLSMKENNVV 408
               DD  R    + E  +V
Sbjct: 609 CGSIDDAGRAFSELTERGIV 628



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 80/282 (28%), Positives = 145/282 (51%), Gaps = 12/282 (4%)

Query: 26  AQELFDKIPQPDVVSYNIMLSCILLNS--DDVVAAFDFFQRLPIK-DTASWNTMISGFVQ 82
           A++L D+  +PD+VS++ ++S    N      + AF     L +K +  ++++++     
Sbjct: 110 ARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSI 169

Query: 83  KKNMAKARDL----FLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAM 138
            K++   + +     ++  E +    + ++  Y +C +   +  LF   P ++VV+W A+
Sbjct: 170 VKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNAL 229

Query: 139 ISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLV 198
            S Y++  +       + + L   M+  GI+PN  SLSS++  C+ L     GK +H  +
Sbjct: 230 FSCYVQIDF-----CGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYL 284

Query: 199 FKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKAL 258
            K     D  +   L+ MY K GDL DA  +F +I++ D+V+WNA+I+G   H   E+AL
Sbjct: 285 IKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQAL 344

Query: 259 RLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV 300
            L  +MK  G+ P+  T  + L AC   GL +LG Q   S++
Sbjct: 345 ELLGQMKRSGICPNIFTLSSALKACAGMGLKELGRQLHSSLM 386



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 76/258 (29%), Positives = 129/258 (50%), Gaps = 15/258 (5%)

Query: 107 MISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGL 166
           +I+ Y +C     A +L   +    +V+W+A+IS     GY +N      L     M  L
Sbjct: 97  LINLYSKCRNFGYARKLVDESSEPDLVSWSALIS-----GYAQNGLGGGALMAFHEMHLL 151

Query: 167 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 226
           G++ N  + SSVL  CS +  L++GKQVH +V  S    D      L+ MY KC +  D+
Sbjct: 152 GVKCNEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDS 211

Query: 227 CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHA 286
            +LF EI  ++VV+WNA+ S Y Q     +A+ LF +M   G+KP+  +  +++ AC   
Sbjct: 212 KRLFDEIPERNVVSWNALFSCYVQIDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACT-- 269

Query: 287 GLVDLGIQYFDSMVNDY----GIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPA 342
           GL D        +++ Y    G    P     +VD+  + G L +A+ + +K+  +P   
Sbjct: 270 GLRD---SSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIK-QPDIV 325

Query: 343 IFGTLLSACRVHKRLDLA 360
            +  +++ C +H+  + A
Sbjct: 326 SWNAVIAGCVLHEHHEQA 343



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 93/334 (27%), Positives = 144/334 (43%), Gaps = 73/334 (21%)

Query: 170 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 229
           P + S S +L  C    SL+ G Q+H  + KS L  D +    LI++Y KC +   A KL
Sbjct: 54  PTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRNFGYARKL 113

Query: 230 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLV 289
             E    D+V+W+A+ISGYAQ+G G  AL  F +M   G+K +  TF ++L AC+    +
Sbjct: 114 VDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIVKDL 173

Query: 290 DLGIQYFDSMV-----NDYGIA-------AKPDH----------------------YTCM 315
            +G Q    +V      D  +A       AK D                       ++C 
Sbjct: 174 RIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCY 233

Query: 316 V--DLLGRAGKLVEAVDLIKKM---PFKPQPAIFGTLLSAC---RVHKRLDLAEFAAMNL 367
           V  D  G      EAV L  +M     KP      ++++AC   R   R  +     + L
Sbjct: 234 VQIDFCG------EAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKL 287

Query: 368 -FNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEV--GTVVHE 424
            ++ +P +A      L ++YA +    D   +   +K+ ++V     SW  V  G V+HE
Sbjct: 288 GYDWDPFSANA----LVDMYAKVGDLADAISVFEKIKQPDIV-----SWNAVIAGCVLHE 338

Query: 425 FRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDL 458
                         HE+  EL  +MK +G  P++
Sbjct: 339 H-------------HEQALELLGQMKRSGICPNI 359



 Score = 42.0 bits (97), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 42/186 (22%), Positives = 82/186 (44%), Gaps = 46/186 (24%)

Query: 7   VNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP 66
           V++ S++  +A Q G+ ++A +LF ++   ++     + S  LLN+   ++AF+  ++L 
Sbjct: 527 VSFTSMITAYA-QYGQGEEALKLFLEMQDMELKPDRFVCSS-LLNACANLSAFEQGKQLH 584

Query: 67  IK--------DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLD 118
           +         D  + N++++ + +  ++  A   F  + E+  VSWSAMI G  + G   
Sbjct: 585 VHILKYGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSELTERGIVSWSAMIGGLAQHGHGR 644

Query: 119 KAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSV 178
           +A++LF                                      M+  G+ PN  +L SV
Sbjct: 645 QALQLFN------------------------------------QMLKEGVSPNHITLVSV 668

Query: 179 LLGCSH 184
           L  C+H
Sbjct: 669 LGACNH 674


>gi|449494221|ref|XP_004159483.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Cucumis sativus]
          Length = 638

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 218/553 (39%), Positives = 344/553 (62%), Gaps = 15/553 (2%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M +KT +  +++L     + G +  A+++FD++P   +VS+N M+  +  N ++   A D
Sbjct: 93  MGLKTDLLTSNILINMYSKCGSVDFARQVFDEMPSRSLVSWNTMIGSLTQNGEEN-EALD 151

Query: 61  FFQRLPIKDTA----SWNTMISGFVQKKNMAKARDLFL----AMPEKNSVSWSAMISGYI 112
              ++  + T     + ++++     K  +++ + L      A  + N    +A++  Y 
Sbjct: 152 LLLQMQREGTPFSEFTISSVLCACAAKCALSECQLLHAFAIKAAMDLNVFVATALLDVYA 211

Query: 113 ECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNA 172
           +CG +  AV +F+  P +SVV W++M +GY     V+N   E  L L R     G++ + 
Sbjct: 212 KCGLMKDAVCVFESMPDRSVVTWSSMAAGY-----VQNEMYEQALALFRKAWETGLKHDQ 266

Query: 173 SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLE 232
             +SSV+  C+ L+++  GKQV+ L+ KS  C +    + LI MY KCG +E++ K+F +
Sbjct: 267 FLMSSVICACAGLAAMIEGKQVNALLSKSGFCSNIFVASSLIDMYAKCGGIEESYKVFRD 326

Query: 233 IQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 292
           +++++VV WNAMISG ++H +  + + LF+KM+  G+ P+ +TFV++L AC H GLV  G
Sbjct: 327 VEKRNVVLWNAMISGLSRHARSLEVMILFEKMQQMGLSPNDVTFVSVLSACGHMGLVKKG 386

Query: 293 IQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACR 352
            +YFD M  ++ +A    HY+CMVD L RAG++ EA DLI K+PF    +++G+LL++CR
Sbjct: 387 QKYFDLMTKEHHLAPNVFHYSCMVDTLSRAGQIFEAYDLISKLPFNASASMWGSLLASCR 446

Query: 353 VHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPG 412
            H  L+LAE AA  LF++ P N +G Y+ L+N+YAA  KWD+VA++R  +KE++V K  G
Sbjct: 447 THGNLELAEVAAKKLFDIEPHN-SGNYLLLSNMYAANGKWDEVAKMRKLLKESDVKKERG 505

Query: 413 YSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQ 472
            SWIE+   VH F  G+R HP++V I+ KL E+   ++  GY  + +  LH VGE +K++
Sbjct: 506 KSWIEIKDKVHLFMVGERNHPKIVEIYSKLNEVMDELQKLGYKVETQHDLHQVGESIKQE 565

Query: 473 LLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFH 532
           LL  HSEKLA   GL+ +P   PIR+ KNLR+CGDCH   K  S    R++IVRDT RFH
Sbjct: 566 LLRHHSEKLAFTMGLLFLPPNAPIRIMKNLRICGDCHSFMKLASKFFCRDVIVRDTNRFH 625

Query: 533 HFKDGTCSCGDYW 545
           HFK+G CSCGD+W
Sbjct: 626 HFKNGCCSCGDFW 638



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 81/171 (47%), Gaps = 11/171 (6%)

Query: 171 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 230
           + S +  +L  C+    L  GK  H  +    L  D      LI+MY KCG ++ A ++F
Sbjct: 63  HVSFVHEILKLCAKRKLLLQGKACHAQILLMGLKTDLLTSNILINMYSKCGSVDFARQVF 122

Query: 231 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC-NHAGLV 289
            E+  + +V+WN MI    Q+G+  +AL L  +M+ EG      T  ++L AC     L 
Sbjct: 123 DEMPSRSLVSWNTMIGSLTQNGEENEALDLLLQMQREGTPFSEFTISSVLCACAAKCALS 182

Query: 290 DLGIQYFDSMVNDYGIAAKPDH----YTCMVDLLGRAGKLVEAVDLIKKMP 336
           +        +++ + I A  D      T ++D+  + G + +AV + + MP
Sbjct: 183 EC------QLLHAFAIKAAMDLNVFVATALLDVYAKCGLMKDAVCVFESMP 227


>gi|225434622|ref|XP_002279360.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 743

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 230/551 (41%), Positives = 329/551 (59%), Gaps = 16/551 (2%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIP----QPDVVSYNIMLSCILLNSDDVVAAF 59
           +  V+WNS++  F  Q G  ++A ELF ++     +P+ ++   +LS     SD     +
Sbjct: 200 RDVVSWNSMITAFV-QGGCPEEALELFQEMETQNVKPNGITMVGVLSACAKKSDFEFGRW 258

Query: 60  --DFFQRLPIKDTASW-NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQ 116
              + +R  I ++ +  N M+  + +  ++  A+ LF  MPEK+ VSW+ M+ GY + G+
Sbjct: 259 VHSYIERNRIGESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIGE 318

Query: 117 LDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLL-RMMIGLGIRPNASSL 175
            D A  +F   P + + AW A+IS Y + G       ++ L+L   + +    +P+  +L
Sbjct: 319 YDAAQGIFDAMPNQDIAAWNALISAYEQCGK-----PKEALELFHELQLSKTAKPDEVTL 373

Query: 176 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR 235
            S L  C+ L ++ LG  +H  + K  +  +    T LI MYCKCGDL+ A  +F  ++R
Sbjct: 374 VSTLSACAQLGAMDLGGWIHVYIKKQGMKLNCHLTTSLIDMYCKCGDLQKALMVFHSVER 433

Query: 236 KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQY 295
           KDV  W+AMI+G A HG G+ A+ LF KM+++ +KP+++TF  +L AC+H GLV+ G  +
Sbjct: 434 KDVFVWSAMIAGLAMHGHGKDAIALFSKMQEDKVKPNAVTFTNILCACSHVGLVEEGRTF 493

Query: 296 FDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHK 355
           F+ M   YG+     HY CMVD+LGRAG L EAV+LI+KMP  P  +++G LL AC +H+
Sbjct: 494 FNQMELVYGVLPGVKHYACMVDILGRAGLLEEAVELIEKMPMAPAASVWGALLGACTIHE 553

Query: 356 RLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSW 415
            + LAE A   L  L P N  G YV L+NIYA   KWD V+ +R  M++  + K PG S 
Sbjct: 554 NVVLAEQACSQLIELEPGN-HGAYVLLSNIYAKAGKWDRVSGLRKLMRDVGLKKEPGCSS 612

Query: 416 IEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEE-VKEQLL 474
           IEV  +VHEF  GD  HP    I+ KL E+  R++  GYVP+    L  V EE VKEQ L
Sbjct: 613 IEVDGIVHEFLVGDNSHPSAKKIYAKLDEIVARLETIGYVPNKSHLLQLVEEEDVKEQAL 672

Query: 475 LFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHF 534
             HSEKLAIAFGLI      PIR+ KNLRVCGDCH   K +S +  REI++RD  RFHHF
Sbjct: 673 FLHSEKLAIAFGLISTGQSQPIRIVKNLRVCGDCHSVAKLVSKLYDREILLRDRYRFHHF 732

Query: 535 KDGTCSCGDYW 545
           ++G CSC DYW
Sbjct: 733 REGHCSCMDYW 743



 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 91/350 (26%), Positives = 164/350 (46%), Gaps = 52/350 (14%)

Query: 23  LKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRL------PIKDTASWNTM 76
           L  AQ++FD+IP P++ ++N ++     +S+   +   F + L      P K T  +   
Sbjct: 85  LDYAQQVFDQIPHPNLYTWNTLIRAYASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIK 144

Query: 77  ISGFVQKKNMAKARDLFLAMPEK-----NSVSWSAMISGYIECGQLDKAVELFKVAPVKS 131
            +  +++    KA   F  M  K     +    +++I  Y +CG+L     +F   P + 
Sbjct: 145 AASELEELFTGKA---FHGMVIKVLLGSDVFILNSLIHFYAKCGELGLGYRVFVNIPRRD 201

Query: 132 VVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLG 191
           VV+W +MI+      +V+    E+ L+L + M    ++PN  ++  VL  C+  S  + G
Sbjct: 202 VVSWNSMIT-----AFVQGGCPEEALELFQEMETQNVKPNGITMVGVLSACAKKSDFEFG 256

Query: 192 KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVT----------- 240
           + VH  + ++ + +  T    ++ MY KCG +EDA +LF ++  KD+V+           
Sbjct: 257 RWVHSYIERNRIGESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKI 316

Query: 241 --------------------WNAMISGYAQHGKGEKALRLFDKMK-DEGMKPDSITFVAL 279
                               WNA+IS Y Q GK ++AL LF +++  +  KPD +T V+ 
Sbjct: 317 GEYDAAQGIFDAMPNQDIAAWNALISAYEQCGKPKEALELFHELQLSKTAKPDEVTLVST 376

Query: 280 LLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAV 329
           L AC   G +DLG  +    +   G+       T ++D+  + G L +A+
Sbjct: 377 LSACAQLGAMDLG-GWIHVYIKKQGMKLNCHLTTSLIDMYCKCGDLQKAL 425



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 106/222 (47%), Gaps = 5/222 (2%)

Query: 117 LDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLS 176
           LD A ++F   P  ++  W  +I  Y        S     L  LRM+      P+  +  
Sbjct: 85  LDYAQQVFDQIPHPNLYTWNTLIRAYASSSNPHQSL----LIFLRMLHQSPDFPDKFTFP 140

Query: 177 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK 236
            ++   S L  L  GK  H +V K  L  D   L  LI  Y KCG+L    ++F+ I R+
Sbjct: 141 FLIKAASELEELFTGKAFHGMVIKVLLGSDVFILNSLIHFYAKCGELGLGYRVFVNIPRR 200

Query: 237 DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYF 296
           DVV+WN+MI+ + Q G  E+AL LF +M+ + +KP+ IT V +L AC      + G ++ 
Sbjct: 201 DVVSWNSMITAFVQGGCPEEALELFQEMETQNVKPNGITMVGVLSACAKKSDFEFG-RWV 259

Query: 297 DSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 338
            S +    I         M+D+  + G + +A  L  KMP K
Sbjct: 260 HSYIERNRIGESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEK 301



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 62/262 (23%), Positives = 119/262 (45%), Gaps = 18/262 (6%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  K  V+W ++L G+AK  G+   AQ +FD +P  D+ ++N ++S           A +
Sbjct: 298 MPEKDIVSWTTMLVGYAK-IGEYDAAQGIFDAMPNQDIAAWNALISA-YEQCGKPKEALE 355

Query: 61  FFQRLPIKDTASWN-----TMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISGY 111
            F  L +  TA  +     + +S   Q   M     + + + ++    N    +++I  Y
Sbjct: 356 LFHELQLSKTAKPDEVTLVSTLSACAQLGAMDLGGWIHVYIKKQGMKLNCHLTTSLIDMY 415

Query: 112 IECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPN 171
            +CG L KA+ +F     K V  W+AMI+G    G+      +D + L   M    ++PN
Sbjct: 416 CKCGDLQKALMVFHSVERKDVFVWSAMIAGLAMHGH-----GKDAIALFSKMQEDKVKPN 470

Query: 172 ASSLSSVLLGCSHLSSLQLGKQ-VHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 230
           A + +++L  CSH+  ++ G+   +Q+     +         ++ +  + G LE+A +L 
Sbjct: 471 AVTFTNILCACSHVGLVEEGRTFFNQMELVYGVLPGVKHYACMVDILGRAGLLEEAVELI 530

Query: 231 LEIQRKDVVT-WNAMISGYAQH 251
            ++      + W A++     H
Sbjct: 531 EKMPMAPAASVWGALLGACTIH 552


>gi|225451187|ref|XP_002271063.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 805

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 228/546 (41%), Positives = 324/546 (59%), Gaps = 20/546 (3%)

Query: 12  VLAGFAKQRGKLKD---AQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK 68
           VL  F     K+ D   A+ +F K+P  ++VS+N M+S  + N   V  +FD F RL ++
Sbjct: 268 VLTSFVDMYSKMGDIESARWVFYKMPTRNLVSWNAMISGCVRNGL-VGESFDLFHRL-VR 325

Query: 69  DTASWN-----TMISGFVQKKNMAKARDLF---LAMPEKNSVSWSAMISGYIECGQLDKA 120
            +  ++     +++ G  Q  ++A  + L    +   E N +  +A++  Y +CG L +A
Sbjct: 326 SSGGFDLTTIVSLLQGCSQTASLATGKILHGCAIRSFESNLILSTAIVDLYSKCGSLKQA 385

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLL 180
             +F     ++V+ WTAM+      G  +N  AED L+L   M   GI  N+ +  S++ 
Sbjct: 386 TFVFNRMKDRNVITWTAML-----VGLAQNGHAEDALRLFAQMQEEGIAANSVTFVSLVH 440

Query: 181 GCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ-RKDVV 239
            C+HL SL+ G+ +H  +F+     D   +T L+ MY KCG +  A ++F      KDVV
Sbjct: 441 SCAHLGSLKRGRSIHGHLFRLGFAFDIVNMTALVDMYAKCGKINLAERIFSHGSISKDVV 500

Query: 240 TWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSM 299
            WN+MI+GY  HG G +A+ ++ KM +EG+KP+  TF++LL AC+H+ LV+ GI  F+SM
Sbjct: 501 LWNSMITGYGMHGHGYQAVGIYHKMIEEGLKPNQTTFLSLLSACSHSRLVEQGISLFNSM 560

Query: 300 VNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDL 359
             D+ I     HY C+VDLL RAG+  EA  LI+KMPF+P  A+   LLS CR HK ++L
Sbjct: 561 ERDHNIRPIEKHYACLVDLLSRAGRFEEAQALIEKMPFQPGTAVLEALLSGCRTHKNINL 620

Query: 360 AEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVG 419
               +  L  L+  N  G Y+ L+NIYA  ++WD V  IR  M+   + K PGYS +E G
Sbjct: 621 GIQTSDKLLALDAMNP-GIYIMLSNIYAEARRWDKVDYIRGLMRNRGLKKTPGYSLVETG 679

Query: 420 TVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSE 479
             VH F +GD  HP    I+  L+ L   ++ +GYVPD    L  V EE+K ++L  HSE
Sbjct: 680 NWVHTFFAGDNSHPNWEEIYHFLESLRSAVETSGYVPDTSCVLRDVDEEMKVRMLWGHSE 739

Query: 480 KLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTC 539
           +LAIAFGL+  P G+ IR+ KNLRVCGDCH  TKYIS I KREIIVRD  RFHHF +G C
Sbjct: 740 RLAIAFGLLTTPAGSLIRITKNLRVCGDCHTVTKYISKIVKREIIVRDANRFHHFSNGEC 799

Query: 540 SCGDYW 545
           SCGDYW
Sbjct: 800 SCGDYW 805



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 139/528 (26%), Positives = 237/528 (44%), Gaps = 72/528 (13%)

Query: 11  SVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDT 70
           S +  F  + GK+ +AQ +FD +P  DVV +N ++   +      VA   FF+       
Sbjct: 169 SSMISFLVKFGKIGEAQRVFDGMPNKDVVCWNSIIGGYVQAGCFDVAFQLFFEMHGSGIK 228

Query: 71  ASWNTMIS-----GFVQKKNMAKARDLF-LAMPEKNSV-SWSAMISGYIECGQLDKAVEL 123
            S  TM S     G +    + K    + L +   N +   ++ +  Y + G ++ A  +
Sbjct: 229 PSPITMTSLIQACGGIGNLKLGKCMHGYVLGLGLGNDILVLTSFVDMYSKMGDIESARWV 288

Query: 124 FKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCS 183
           F   P +++V+W AMISG ++ G V  S+ +   +L+R   G  +    +++ S+L GCS
Sbjct: 289 FYKMPTRNLVSWNAMISGCVRNGLVGESF-DLFHRLVRSSGGFDL----TTIVSLLQGCS 343

Query: 184 HLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNA 243
             +SL  GK +H    +S    +    T ++ +Y KCG L+ A  +F  ++ ++V+TW A
Sbjct: 344 QTASLATGKILHGCAIRS-FESNLILSTAIVDLYSKCGSLKQATFVFNRMKDRNVITWTA 402

Query: 244 MISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDY 303
           M+ G AQ+G  E ALRLF +M++EG+  +S+TFV+L+ +C H G +  G      +    
Sbjct: 403 MLVGLAQNGHAEDALRLFAQMQEEGIAANSVTFVSLVHSCAHLGSLKRGRSIHGHLFR-L 461

Query: 304 GIAAKPDHYTCMVDLLGRAGKL--------------------------------VEAVDL 331
           G A    + T +VD+  + GK+                                 +AV +
Sbjct: 462 GFAFDIVNMTALVDMYAKCGKINLAERIFSHGSISKDVVLWNSMITGYGMHGHGYQAVGI 521

Query: 332 IKKM---PFKPQPAIFGTLLSACRVHKRL---DLAEFAAMNL-FNLNPANAAGCYVQLAN 384
             KM     KP    F +LLSAC  H RL    ++ F +M    N+ P      Y  L +
Sbjct: 522 YHKMIEEGLKPNQTTFLSLLSACS-HSRLVEQGISLFNSMERDHNIRPIEKH--YACLVD 578

Query: 385 IYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHE-FRSGDRVHPELVSIHEKLK 443
           + +   ++++   +        + KMP     + GT V E   SG R H    +I+  ++
Sbjct: 579 LLSRAGRFEEAQAL--------IEKMP----FQPGTAVLEALLSGCRTHK---NINLGIQ 623

Query: 444 ELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVP 491
             +K + L    P +   L  +  E +    + +   L    GL K P
Sbjct: 624 TSDKLLALDAMNPGIYIMLSNIYAEARRWDKVDYIRGLMRNRGLKKTP 671



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 90/327 (27%), Positives = 154/327 (47%), Gaps = 28/327 (8%)

Query: 23  LKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK----DTASWNTMIS 78
           L+ A+ +FD+  QP  +  N ML C  L S       + F  +  +    D+ S    + 
Sbjct: 80  LEAARYVFDQFFQPKGLLCNAML-CGYLQSGRYRETLELFGLMRSRNLEVDSCSCTFAL- 137

Query: 79  GFVQKKNMAKARDLFLAMP----------EKNSVSWSAMISGYIECGQLDKAVELFKVAP 128
                K  A + D  + M           EKN    S+MIS  ++ G++ +A  +F   P
Sbjct: 138 -----KACASSLDYEMGMEIISSAVEKGMEKNRFVGSSMISFLVKFGKIGEAQRVFDGMP 192

Query: 129 VKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSL 188
            K VV W ++I GY++ G  + ++     +L   M G GI+P+  +++S++  C  + +L
Sbjct: 193 NKDVVCWNSIIGGYVQAGCFDVAF-----QLFFEMHGSGIKPSPITMTSLIQACGGIGNL 247

Query: 189 QLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGY 248
           +LGK +H  V    L  D   LT  + MY K GD+E A  +F ++  +++V+WNAMISG 
Sbjct: 248 KLGKCMHGYVLGLGLGNDILVLTSFVDMYSKMGDIESARWVFYKMPTRNLVSWNAMISGC 307

Query: 249 AQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK 308
            ++G   ++  LF ++       D  T V+LL  C+    +  G       +  +   + 
Sbjct: 308 VRNGLVGESFDLFHRLVRSSGGFDLTTIVSLLQGCSQTASLATGKILHGCAIRSF--ESN 365

Query: 309 PDHYTCMVDLLGRAGKLVEAVDLIKKM 335
               T +VDL  + G L +A  +  +M
Sbjct: 366 LILSTAIVDLYSKCGSLKQATFVFNRM 392



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 66/147 (44%), Gaps = 1/147 (0%)

Query: 192 KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQH 251
           K  H  +  + L  D    T L+  Y     LE A  +F +  +   +  NAM+ GY Q 
Sbjct: 49  KSTHAQIITNSLSTDQFVATKLVKAYSDLRSLEAARYVFDQFFQPKGLLCNAMLCGYLQS 108

Query: 252 GKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDH 311
           G+  + L LF  M+   ++ DS +    L AC  +   ++G++   S V + G+      
Sbjct: 109 GRYRETLELFGLMRSRNLEVDSCSCTFALKACASSLDYEMGMEIISSAV-EKGMEKNRFV 167

Query: 312 YTCMVDLLGRAGKLVEAVDLIKKMPFK 338
            + M+  L + GK+ EA  +   MP K
Sbjct: 168 GSSMISFLVKFGKIGEAQRVFDGMPNK 194


>gi|147864534|emb|CAN78385.1| hypothetical protein VITISV_017238 [Vitis vinifera]
          Length = 643

 Score =  427 bits (1097), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 221/529 (41%), Positives = 325/529 (61%), Gaps = 9/529 (1%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
           NS++  +A  +  L  A++LF      DVVS+N M+    +   ++      F R+  +D
Sbjct: 39  NSLIHLYANGK-DLGAAKQLFSLCSDRDVVSWNAMIDG-YVKRGEMGHTRMVFDRMVCRD 96

Query: 70  TASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPV 129
             SWNT+I+G+     + +A+ LF  MPE+N VSW++M+SG+++CG +++A  LF   P 
Sbjct: 97  VISWNTIINGYAIVGKIDEAKRLFDEMPERNLVSWNSMLSGFVKCGNVEEAFGLFSEMPC 156

Query: 130 KSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQ 189
           + VV+W +M++ Y + G        + L L   M  +G++P  +++ S+L  C+HL +L 
Sbjct: 157 RDVVSWNSMLACYAQCGK-----PNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALD 211

Query: 190 LGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYA 249
            G  +H  +  + +  ++   T L+ MY KCG +  A ++F  ++ KDV+ WN +I+G A
Sbjct: 212 KGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMA 271

Query: 250 QHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKP 309
            HG  ++A +LF +MK+  ++P+ ITFVA+L AC+HAG+VD G +  D M + YGI  K 
Sbjct: 272 IHGHVKEAQQLFKEMKEASVEPNDITFVAMLSACSHAGMVDEGQKLLDCMSSSYGIEPKV 331

Query: 310 DHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFN 369
           +HY C++DLL RAG L EA++LI  MP +P P+  G LL  CR+H   +L E     L N
Sbjct: 332 EHYDCVIDLLARAGLLEEAMELIGTMPMEPNPSALGALLGGCRIHGNFELGEMVGKRLIN 391

Query: 370 LNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGD 429
           L P + +G Y+ L+NIYAA KKWDD  ++R  MK N + K+PG S IE+  +VH F +GD
Sbjct: 392 LQPCH-SGRYILLSNIYAAAKKWDDARKVRNLMKVNGISKVPGVSVIELKGMVHRFVAGD 450

Query: 430 RVHPELVSIHEKLKELEKRMKLA-GYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLI 488
             HPE   I++KL E+  R+K A GY  D    L  + EE KE  L  HSEKLAIA+GL+
Sbjct: 451 WSHPESNKIYDKLNEIHTRLKSAIGYSADTGNVLLDMEEEDKEHALAVHSEKLAIAYGLL 510

Query: 489 KVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDG 537
            +     IR+ KNLRVC DCH  TK IS +  REIIVRD  RFHHF+DG
Sbjct: 511 HLDSKEAIRIVKNLRVCRDCHHVTKLISKVYGREIIVRDRNRFHHFEDG 559



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 81/277 (29%), Positives = 144/277 (51%), Gaps = 17/277 (6%)

Query: 98  EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGL 157
           E +S   +++I  Y     L  A +LF +   + VV+W AMI GY+K G + ++      
Sbjct: 32  ECDSYIVNSLIHLYANGKDLGAAKQLFSLCSDRDVVSWNAMIDGYVKRGEMGHT------ 85

Query: 158 KLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMY 217
              RM+    +  +  S ++++ G + +  +   K+    +F     ++  +   ++S +
Sbjct: 86  ---RMVFDRMVCRDVISWNTIINGYAIVGKIDEAKR----LFDEMPERNLVSWNSMLSGF 138

Query: 218 CKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFV 277
            KCG++E+A  LF E+  +DVV+WN+M++ YAQ GK  +AL LFD+M+  G+KP   T V
Sbjct: 139 VKCGNVEEAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVV 198

Query: 278 ALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPF 337
           +LL AC H G +D G+ +  + +ND  I       T +VD+  + GK+  A  +   M  
Sbjct: 199 SLLSACAHLGALDKGL-HLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMES 257

Query: 338 KPQPAIFGTLLSACRVHKRLDLAE--FAAMNLFNLNP 372
           K   A + T+++   +H  +  A+  F  M   ++ P
Sbjct: 258 KDVLA-WNTIIAGMAIHGHVKEAQQLFKEMKEASVEP 293



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 77/308 (25%), Positives = 138/308 (44%), Gaps = 46/308 (14%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILL--NSDDVVAA 58
           M  +  V+WNS+L+GF K  G +++A  LF ++P  DVVS+N ML+C       ++ +A 
Sbjct: 123 MPERNLVSWNSMLSGFVKC-GNVEEAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALAL 181

Query: 59  FDFFQRLPIKDT-ASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMISGYIE 113
           FD  + + +K T A+  +++S       + K   L   +     E NS+  +A++  Y +
Sbjct: 182 FDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAK 241

Query: 114 CGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNAS 173
           CG++  A ++F     K V+AW  +I+G    G+V     ++  +L + M    + PN  
Sbjct: 242 CGKISLATQVFNAMESKDVLAWNTIIAGMAIHGHV-----KEAQQLFKEMKEASVEPNDI 296

Query: 174 SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI 233
           +  ++L  CSH   +  G+++   +  S        + P +  Y                
Sbjct: 297 TFVAMLSACSHAGMVDEGQKLLDCMSSS------YGIEPKVEHY---------------- 334

Query: 234 QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGI 293
                   + +I   A+ G  E+A+ L   M    M+P+     ALL  C   G  +LG 
Sbjct: 335 --------DCVIDLLARAGLLEEAMELIGTMP---MEPNPSALGALLGGCRIHGNFELGE 383

Query: 294 QYFDSMVN 301
                ++N
Sbjct: 384 MVGKRLIN 391



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 73/161 (45%), Gaps = 9/161 (5%)

Query: 178 VLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKD 237
           V+  C+  S    G  VH  V KS    D+  +  LI +Y    DL  A +LF     +D
Sbjct: 6   VIKACNESSVTWFGLLVHTHVVKSGFECDSYIVNSLIHLYANGKDLGAAKQLFSLCSDRD 65

Query: 238 VVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFD 297
           VV+WNAMI GY + G+      +FD+M    +  D I++  ++      G +D   + FD
Sbjct: 66  VVSWNAMIDGYVKRGEMGHTRMVFDRM----VCRDVISWNTIINGYAIVGKIDEAKRLFD 121

Query: 298 SMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 338
            M     ++     +  M+    + G + EA  L  +MP +
Sbjct: 122 EMPERNLVS-----WNSMLSGFVKCGNVEEAFGLFSEMPCR 157


>gi|108708629|gb|ABF96424.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125586550|gb|EAZ27214.1| hypothetical protein OsJ_11153 [Oryza sativa Japonica Group]
          Length = 748

 Score =  427 bits (1097), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 225/555 (40%), Positives = 324/555 (58%), Gaps = 47/555 (8%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELF----DKIPQPDVVSYNIMLSCILLNSD--- 53
           M+ +  V WNS+++G  +Q G++  A E+F    D    PDV++   + S I    D   
Sbjct: 231 MSSRDLVTWNSIISGH-EQGGQVASAVEMFCGMRDSGVSPDVLTLLSLASAIAQCGDICG 289

Query: 54  -DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYI 112
              V  +   +   + D  + N ++  + +   +  A+ +F +MP +++VSW+ +I+GY+
Sbjct: 290 GRSVHCYMVRRGWDVGDIIAGNAIVDMYAKLSKIEAAQRMFDSMPVRDAVSWNTLITGYM 349

Query: 113 ECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNA 172
           + G   +A+ ++                                     M    G++P  
Sbjct: 350 QNGLASEAIHVYD-----------------------------------HMQKHEGLKPIQ 374

Query: 173 SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLE 232
            +  SVL   SHL +LQ G ++H L  K+ L  D    T +I +Y KCG L++A  LF +
Sbjct: 375 GTFVSVLPAYSHLGALQQGTRMHALSIKTGLNLDVYVGTCVIDLYAKCGKLDEAMLLFEQ 434

Query: 233 IQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 292
             R+    WNA+ISG   HG G KAL LF +M+ EG+ PD +TFV+LL AC+HAGLVD G
Sbjct: 435 TPRRSTGPWNAVISGVGVHGHGAKALSLFSQMQQEGISPDHVTFVSLLAACSHAGLVDQG 494

Query: 293 IQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACR 352
             +F+ M   YGI     HY CMVD+ GRAG+L +A D I+ MP KP  AI+G LL ACR
Sbjct: 495 RNFFNMMQTAYGIKPIAKHYACMVDMFGRAGQLDDAFDFIRNMPIKPDSAIWGALLGACR 554

Query: 353 VHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPG 412
           +H  +++ + A+ NLF L+P N  G YV ++N+YA + KWD V  +R  ++  N+ K PG
Sbjct: 555 IHGNVEMGKVASQNLFELDPKN-VGYYVLMSNMYAKVGKWDGVDEVRSLVRRQNLQKTPG 613

Query: 413 YSWIEVGTVVHEFRSGDR--VHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVK 470
           +S IEV   V+ F SG++  +HP+   I  +L +L  +++  GYVPD  F L  V E+ K
Sbjct: 614 WSSIEVKRSVNVFYSGNQMNIHPQHEEIQRELLDLLAKIRSLGYVPDYSFVLQDVEEDEK 673

Query: 471 EQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTR 530
           EQ+L  HSE+LAIAFG+I  P  TP+ ++KNLRVCGDCH ATKYIS I +REIIVRD+ R
Sbjct: 674 EQILNNHSERLAIAFGIINTPPRTPLHIYKNLRVCGDCHNATKYISKITEREIIVRDSNR 733

Query: 531 FHHFKDGTCSCGDYW 545
           FHHFKDG CSCGD+W
Sbjct: 734 FHHFKDGYCSCGDFW 748



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/247 (27%), Positives = 115/247 (46%), Gaps = 5/247 (2%)

Query: 92  LFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENS 151
           L L +   ++ +  A++  Y+  G++  A   F     + V AW AM+SG  +     N+
Sbjct: 95  LRLGLLRGDAFASGALVHAYLRFGRVRDAYRAFDEMRHRDVPAWNAMLSGLCR-----NA 149

Query: 152 WAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALT 211
            A + + L   M+  G+  +A ++SSVL  C  L    L   +H    K  L  +     
Sbjct: 150 RAAEAVGLFGRMVMEGVAGDAVTVSSVLPMCVLLGDRALALAMHLYAVKHGLDDELFVCN 209

Query: 212 PLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKP 271
            +I +Y K G LE+  K+F  +  +D+VTWN++ISG+ Q G+   A+ +F  M+D G+ P
Sbjct: 210 AMIDVYGKLGMLEEVRKVFDGMSSRDLVTWNSIISGHEQGGQVASAVEMFCGMRDSGVSP 269

Query: 272 DSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDL 331
           D +T ++L  A    G +  G      MV              +VD+  +  K+  A  +
Sbjct: 270 DVLTLLSLASAIAQCGDICGGRSVHCYMVRRGWDVGDIIAGNAIVDMYAKLSKIEAAQRM 329

Query: 332 IKKMPFK 338
              MP +
Sbjct: 330 FDSMPVR 336


>gi|347954536|gb|AEP33768.1| organelle transcript processing 82, partial [Nasturtium officinale]
          Length = 670

 Score =  427 bits (1097), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 228/568 (40%), Positives = 329/568 (57%), Gaps = 48/568 (8%)

Query: 19  QRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMIS 78
           Q  +L+DA ++FD+    DVVSY  +++    +   + +A + F  +P+KD  SWN MIS
Sbjct: 110 QNERLEDAHKVFDRSSHRDVVSYTALVTG-YASRGYIESARNMFDEIPVKDVVSWNAMIS 168

Query: 79  GFVQKKNMAKARDLFLAM------PEKNSV--------------------SW-------- 104
           G+V+  N  +A +LF  M      P+++++                    SW        
Sbjct: 169 GYVETGNYKEALELFKEMMKTNVRPDESTMVTVISASARSGSIELGRQVHSWIADHGFGS 228

Query: 105 -----SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKL 159
                +A+I  Y +CG+++ A  LF     K V++W  +I GY        +  ++ L L
Sbjct: 229 NLKIVNALIDFYSKCGEMETACGLFLGLSYKDVISWNILIGGYTHL-----NLYKEALLL 283

Query: 160 LRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK--SPLCKDTTALTPLISMY 217
            + M+  G  PN  ++ S+L  C+HL ++ +G+ +H  + K    +   ++  T LI MY
Sbjct: 284 FQEMLRSGESPNDVTMLSILHACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMY 343

Query: 218 CKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFV 277
            KCGD+E A ++F  +  K +  WNAMI G+A HG+   A  +F +M+   +KPD ITFV
Sbjct: 344 SKCGDIEAAHQVFNSMLHKSLPAWNAMIFGFAMHGRANAAFDIFSRMRKNEIKPDDITFV 403

Query: 278 ALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPF 337
            LL AC+HAG++DLG   F SM ++Y I  K +HY CM+DLLG +G   EA ++I  M  
Sbjct: 404 GLLSACSHAGMLDLGRHIFRSMTHNYKITPKLEHYGCMIDLLGHSGLFKEAEEMISTMTM 463

Query: 338 KPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVAR 397
           +P   I+ +LL AC++H  ++L E  A NLF + P N  G YV L+NIYA   +W++VAR
Sbjct: 464 EPDGVIWCSLLKACKMHGNVELGEKFAQNLFKIEPNNP-GSYVLLSNIYATAGRWNEVAR 522

Query: 398 IRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPD 457
           IR  + +  + K+PG S IE+ +VVHEF  GD+ HP    I+  L+E+E  ++ AG+VPD
Sbjct: 523 IRGLLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLQEAGFVPD 582

Query: 458 LEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISA 517
               L  + EE KE  L  HSEKLAIAFGLI     T + + KNLRVC +CH ATK IS 
Sbjct: 583 TSEVLQEMEEEFKEGALRHHSEKLAIAFGLISTKPETKLTIVKNLRVCRNCHEATKLISK 642

Query: 518 IEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           I KREII RD TRFHHF+DG CSC DYW
Sbjct: 643 IYKREIIARDRTRFHHFRDGVCSCNDYW 670



 Score =  164 bits (416), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 92/299 (30%), Positives = 159/299 (53%), Gaps = 15/299 (5%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVV 133
            ++IS +VQ + +  A  +F     ++ VS++A+++GY   G ++ A  +F   PVK VV
Sbjct: 102 TSLISMYVQNERLEDAHKVFDRSSHRDVVSYTALVTGYASRGYIESARNMFDEIPVKDVV 161

Query: 134 AWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ 193
           +W AMIS     GYVE    ++ L+L + M+   +RP+ S++ +V+   +   S++LG+Q
Sbjct: 162 SWNAMIS-----GYVETGNYKEALELFKEMMKTNVRPDESTMVTVISASARSGSIELGRQ 216

Query: 194 VHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGK 253
           VH  +       +   +  LI  Y KCG++E AC LFL +  KDV++WN +I GY     
Sbjct: 217 VHSWIADHGFGSNLKIVNALIDFYSKCGEMETACGLFLGLSYKDVISWNILIGGYTHLNL 276

Query: 254 GEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ---YFDSMVNDYGIAAKPD 310
            ++AL LF +M   G  P+ +T +++L AC H G +D+G     Y D  +   G+     
Sbjct: 277 YKEALLLFQEMLRSGESPNDVTMLSILHACAHLGAIDIGRWIHVYIDKRLK--GVTNASS 334

Query: 311 HYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFN 369
             T ++D+  + G +  A  +   M  K  PA +  ++    +H R +    AA ++F+
Sbjct: 335 LRTSLIDMYSKCGDIEAAHQVFNSMLHKSLPA-WNAMIFGFAMHGRAN----AAFDIFS 388



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 74/256 (28%), Positives = 115/256 (44%), Gaps = 43/256 (16%)

Query: 117 LDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAED---GLKLLRMMIGLGIRPNAS 173
           L  A+ +F+     +++ W  M  G+        + + D    LKL   MI LG+ PN+ 
Sbjct: 13  LPYAISVFETIQEPNLLIWNTMFRGH--------ALSPDPVSALKLYVCMISLGLLPNSY 64

Query: 174 SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK----- 228
           +   +L  C+ L + + G Q+H  V K     D    T LISMY +   LEDA K     
Sbjct: 65  TFPFLLKSCAKLKASKEGLQIHGHVLKLGYELDLYVHTSLISMYVQNERLEDAHKVFDRS 124

Query: 229 --------------------------LFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFD 262
                                     +F EI  KDVV+WNAMISGY + G  ++AL LF 
Sbjct: 125 SHRDVVSYTALVTGYASRGYIESARNMFDEIPVKDVVSWNAMISGYVETGNYKEALELFK 184

Query: 263 KMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRA 322
           +M    ++PD  T V ++ A   +G ++LG Q   S + D+G  +       ++D   + 
Sbjct: 185 EMMKTNVRPDESTMVTVISASARSGSIELGRQ-VHSWIADHGFGSNLKIVNALIDFYSKC 243

Query: 323 GKLVEAVDLIKKMPFK 338
           G++  A  L   + +K
Sbjct: 244 GEMETACGLFLGLSYK 259


>gi|15227144|ref|NP_179798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206010|sp|Q9SHZ8.1|PP168_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g22070
 gi|4587589|gb|AAD25817.1| hypothetical protein [Arabidopsis thaliana]
 gi|330252165|gb|AEC07259.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 786

 Score =  427 bits (1097), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 250/563 (44%), Positives = 330/563 (58%), Gaps = 32/563 (5%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELF-----DKIPQPDVVSYNIMLS--------C 47
           M  +  V WNS+++GF  QRG    A ++F     D +  PD  +   +LS        C
Sbjct: 238 MAERDIVTWNSMISGF-NQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSACANLEKLC 296

Query: 48  I--LLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKN--SVS 103
           I   ++S  V   FD             N +IS + +   +  AR L      K+     
Sbjct: 297 IGKQIHSHIVTTGFDI-------SGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEG 349

Query: 104 WSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMM 163
           ++A++ GYI+ G +++A  +F     + VVAWTAMI GY + G    S+ E  + L R M
Sbjct: 350 FTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHG----SYGE-AINLFRSM 404

Query: 164 IGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDL 223
           +G G RPN+ +L+++L   S L+SL  GKQ+H    KS      +    LI+MY K G++
Sbjct: 405 VGGGQRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGNI 464

Query: 224 EDACKLFLEIQ-RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA 282
             A + F  I+  +D V+W +MI   AQHG  E+AL LF+ M  EG++PD IT+V +  A
Sbjct: 465 TSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSA 524

Query: 283 CNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPA 342
           C HAGLV+ G QYFD M +   I     HY CMVDL GRAG L EA + I+KMP +P   
Sbjct: 525 CTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVV 584

Query: 343 IFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSM 402
            +G+LLSACRVHK +DL + AA  L  L P N+ G Y  LAN+Y+A  KW++ A+IR SM
Sbjct: 585 TWGSLLSACRVHKNIDLGKVAAERLLLLEPENS-GAYSALANLYSACGKWEEAAKIRKSM 643

Query: 403 KENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFAL 462
           K+  V K  G+SWIEV   VH F   D  HPE   I+  +K++   +K  GYVPD    L
Sbjct: 644 KDGRVKKEQGFSWIEVKHKVHVFGVEDGTHPEKNEIYMTMKKIWDEIKKMGYVPDTASVL 703

Query: 463 HAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKRE 522
           H + EEVKEQ+L  HSEKLAIAFGLI  P  T +R+ KNLRVC DCH A K+IS +  RE
Sbjct: 704 HDLEEEVKEQILRHHSEKLAIAFGLISTPDKTTLRIMKNLRVCNDCHTAIKFISKLVGRE 763

Query: 523 IIVRDTTRFHHFKDGTCSCGDYW 545
           IIVRDTTRFHHFKDG CSC DYW
Sbjct: 764 IIVRDTTRFHHFKDGFCSCRDYW 786



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 110/411 (26%), Positives = 184/411 (44%), Gaps = 88/411 (21%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIML--------------- 45
           M ++T  +WN+VL+ ++K RG +    E FD++PQ D VS+  M+               
Sbjct: 75  MPLRTAFSWNTVLSAYSK-RGDMDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRV 133

Query: 46  ------------SCILLNSDDVVAA----------FDFFQRLPIKDTAS-WNTMISGFVQ 82
                          L N    VAA            F  +L ++   S  N++++ + +
Sbjct: 134 MGDMVKEGIEPTQFTLTNVLASVAATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAK 193

Query: 83  KKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGY 142
             +   A+ +F  M  ++  SW+AMI+ +++ GQ+D A+  F+    + +V W +MISG+
Sbjct: 194 CGDPMMAKFVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGF 253

Query: 143 MKFGYVENSWAEDGL-KLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKS 201
            + GY  +  A D   K+LR  +   + P+  +L+SVL  C++L  L +GKQ+H  +  +
Sbjct: 254 NQRGY--DLRALDIFSKMLRDSL---LSPDRFTLASVLSACANLEKLCIGKQIHSHIVTT 308

Query: 202 PLCKDTTALTPLISMYCKCGDLEDACKL-------------------------------- 229
                   L  LISMY +CG +E A +L                                
Sbjct: 309 GFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKN 368

Query: 230 -FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGL 288
            F+ ++ +DVV W AMI GY QHG   +A+ LF  M   G +P+S T  A+L   +    
Sbjct: 369 IFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTLAAMLSVASSLAS 428

Query: 289 VDLGIQYFDSMVND---YGIAAKPDHYTCMVDLLGRAGKLV---EAVDLIK 333
           +  G Q   S V     Y ++        ++ +  +AG +     A DLI+
Sbjct: 429 LSHGKQIHGSAVKSGEIYSVSVS----NALITMYAKAGNITSASRAFDLIR 475



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 95/368 (25%), Positives = 166/368 (45%), Gaps = 36/368 (9%)

Query: 38  VVSYNIMLSCILLN--------SDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKA 89
           V+   +M S  L+N        +   + A   F  +P++   SWNT++S + ++ +M   
Sbjct: 40  VIKSGLMFSVYLMNNLMNVYSKTGYALHARKLFDEMPLRTAFSWNTVLSAYSKRGDMDST 99

Query: 90  RDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVE 149
            + F  +P+++SVSW+ MI GY   GQ  KA+ +     VK  +  T      +      
Sbjct: 100 CEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMG-DMVKEGIEPTQFTLTNVLASVAA 158

Query: 150 NSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTA 209
               E G K+   ++ LG+R N S  +S+L   +      + K     VF   + +D ++
Sbjct: 159 TRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAK----FVFDRMVVRDISS 214

Query: 210 LTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKM-KDEG 268
              +I+++ + G ++ A   F ++  +D+VTWN+MISG+ Q G   +AL +F KM +D  
Sbjct: 215 WNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSL 274

Query: 269 MKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEA 328
           + PD  T  ++L AC +   + +G Q    +V   G          ++ +  R G +  A
Sbjct: 275 LSPDRFTLASVLSACANLEKLCIGKQIHSHIVTT-GFDISGIVLNALISMYSRCGGVETA 333

Query: 329 VDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAA 388
             LI++                 R  K L +  F A+    L+     G   Q  NI+ +
Sbjct: 334 RRLIEQ-----------------RGTKDLKIEGFTAL----LDGYIKLGDMNQAKNIFVS 372

Query: 389 MKKWDDVA 396
           +K  D VA
Sbjct: 373 LKDRDVVA 380



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 71/152 (46%), Gaps = 15/152 (9%)

Query: 170 PNASSLSSVLLGCSHLSSLQLGKQ--------VHQLVFKSPLCKDTTALTPLISMYCKCG 221
           P   SLS++L  C++L    + K         VH  V KS L      +  L+++Y K G
Sbjct: 4   PVPLSLSTLLELCTNLLQKSVNKSNGRFTAQLVHCRVIKSGLMFSVYLMNNLMNVYSKTG 63

Query: 222 DLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLL 281
               A KLF E+  +   +WN ++S Y++ G  +     FD++     + DS+++  +++
Sbjct: 64  YALHARKLFDEMPLRTAFSWNTVLSAYSKRGDMDSTCEFFDQLP----QRDSVSWTTMIV 119

Query: 282 ACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYT 313
              + G     I+    MV + GI  +P  +T
Sbjct: 120 GYKNIGQYHKAIRVMGDMVKE-GI--EPTQFT 148


>gi|168044807|ref|XP_001774871.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673765|gb|EDQ60283.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 902

 Score =  427 bits (1097), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 218/532 (40%), Positives = 325/532 (61%), Gaps = 13/532 (2%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNS--DDVVAAFDFFQRLPIK-DTASWNTMI 77
           G +KDA+ +FDK+ + DV+S+  M+  +  +    + +  +   Q+  ++ +  ++ +++
Sbjct: 377 GSIKDARLVFDKMVRKDVISWTAMIGGLAKSGFGAEALTVYQEMQQAGVEPNRVTYTSIL 436

Query: 78  SGFVQKKNMAKARDLFLAMPEKNSVS----WSAMISGYIECGQLDKAVELFKVAPVKSVV 133
           +       +   R +   + E    +     + +++ Y  CG +  A ++F     + +V
Sbjct: 437 NACSSPAALEWGRRIHQQVVEAGLATDAHVGNTLVNMYSMCGSVKDARQVFDRMIQRDIV 496

Query: 134 AWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ 193
           A+ AMI GY       ++  ++ LKL   +   G++P+  +  ++L  C++  SL+  ++
Sbjct: 497 AYNAMIGGY-----AAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACANSGSLEWARE 551

Query: 194 VHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGK 253
           +H LV K     DT+    L+S Y KCG   DA  +F ++ +++V++WNA+I G AQHG+
Sbjct: 552 IHTLVRKGGFFSDTSVGNALVSTYAKCGSFSDASIVFEKMTKRNVISWNAIIGGSAQHGR 611

Query: 254 GEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYT 313
           G+ AL+LF++MK EG+KPD +TFV+LL AC+HAGL++ G +YF SM  D+ I    +HY 
Sbjct: 612 GQDALQLFERMKMEGVKPDIVTFVSLLSACSHAGLLEEGRRYFCSMSQDFAIIPTIEHYG 671

Query: 314 CMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPA 373
           CMVDLLGRAG+L EA  LIK MPF+    I+G LL ACR+H  + +AE AA +   L+  
Sbjct: 672 CMVDLLGRAGQLDEAEALIKTMPFQANTRIWGALLGACRIHGNVPVAERAAESSLKLDLD 731

Query: 374 NAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHP 433
           NA   YV L+++YAA   WD  A++R  M++  V K PG SWI+VG  +H F + DR HP
Sbjct: 732 NAV-VYVALSHMYAAAGMWDSAAKLRKLMEQRGVTKEPGRSWIQVGDKLHYFVAEDRSHP 790

Query: 434 ELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLG 493
           +   I+ +L  L   MK+ GYVPD    +H V E  KE  +  HSE+LAIA+GLI  P G
Sbjct: 791 QSEKIYAELDRLTHAMKMKGYVPDTRSVMHDVDEGEKENAVCHHSERLAIAYGLISTPPG 850

Query: 494 TPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           T I +FKNLRVC DCH ATK+IS I  REII RD  RFHHFKDG CSCGDYW
Sbjct: 851 TRIHIFKNLRVCPDCHTATKFISKIVDREIIARDVNRFHHFKDGVCSCGDYW 902



 Score =  141 bits (356), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 89/334 (26%), Positives = 173/334 (51%), Gaps = 16/334 (4%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP--- 66
           N +L  +AK  G +++A+E+FDK+ +  VVS+ I +     +      AF+ FQ++    
Sbjct: 165 NCILNMYAKC-GSIEEAREVFDKMEKKSVVSWTITIGG-YADCGRSETAFEIFQKMEQEG 222

Query: 67  -IKDTASWNTMISGFVQ----KKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAV 121
            + +  ++ ++++ F      K   A    +  A  E ++   +A++  Y +CG      
Sbjct: 223 VVPNRITYISVLNAFSSPAALKWGKAVHSRILNAGHESDTAVGTALVKMYAKCGSYKDCR 282

Query: 122 ELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLG 181
           ++F+    + ++AW  MI G  + GY    W E+  ++   M   G+ PN  +   +L  
Sbjct: 283 QVFEKLVNRDLIAWNTMIGGLAEGGY----W-EEASEVYNQMQREGVMPNKITYVILLNA 337

Query: 182 CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTW 241
           C + ++L  GK++H  V K+    D      LISMY +CG ++DA  +F ++ RKDV++W
Sbjct: 338 CVNSAALHWGKEIHSRVAKAGFTSDIGVQNALISMYSRCGSIKDARLVFDKMVRKDVISW 397

Query: 242 NAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN 301
            AMI G A+ G G +AL ++ +M+  G++P+ +T+ ++L AC+    ++ G +    +V 
Sbjct: 398 TAMIGGLAKSGFGAEALTVYQEMQQAGVEPNRVTYTSILNACSSPAALEWGRRIHQQVV- 456

Query: 302 DYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335
           + G+A        +V++    G + +A  +  +M
Sbjct: 457 EAGLATDAHVGNTLVNMYSMCGSVKDARQVFDRM 490



 Score =  134 bits (338), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 76/294 (25%), Positives = 159/294 (54%), Gaps = 13/294 (4%)

Query: 49  LLNSDDVVAAFDFFQRLPIK-DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSV----S 103
           ++  D  V    + Q+   + +++ +  M+   ++ K++   R +   + +  +V    +
Sbjct: 1   MIEKDGAVDVVQYLQQQGAQVNSSDYMKMLKRCIEVKDLVAGRQVHQHIIQHRTVPDQYT 60

Query: 104 WSAMISGYIECGQLDKAVELFKVAPV--KSVVAWTAMISGYMKFGYVENSWAEDGLKLLR 161
            +A+I+ YI+CG +++A +++K      ++V +W AM+ GY+++GY+E +     LKLLR
Sbjct: 61  VNALINMYIQCGSIEEARQVWKKLSYMERTVHSWNAMVVGYIQYGYIEKA-----LKLLR 115

Query: 162 MMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCG 221
            M   G+ P+ +++ S L  C    +L+ G+++H    ++ L  D      +++MY KCG
Sbjct: 116 QMQQHGLAPDRTTIMSFLSSCKSPGALEWGREIHFQAMQAGLLFDVKVANCILNMYAKCG 175

Query: 222 DLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLL 281
            +E+A ++F ++++K VV+W   I GYA  G+ E A  +F KM+ EG+ P+ IT++++L 
Sbjct: 176 SIEEAREVFDKMEKKSVVSWTITIGGYADCGRSETAFEIFQKMEQEGVVPNRITYISVLN 235

Query: 282 ACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335
           A +    +  G      ++N  G  +     T +V +  + G   +   + +K+
Sbjct: 236 AFSSPAALKWGKAVHSRILNA-GHESDTAVGTALVKMYAKCGSYKDCRQVFEKL 288


>gi|224077074|ref|XP_002305120.1| predicted protein [Populus trichocarpa]
 gi|222848084|gb|EEE85631.1| predicted protein [Populus trichocarpa]
          Length = 786

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 228/531 (42%), Positives = 323/531 (60%), Gaps = 15/531 (2%)

Query: 23  LKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQ 82
           + DA+ +F  +P+ D++++N ++S    N +D  AA   F  +  +      T +S  ++
Sbjct: 263 MDDARLVFKLMPERDMIAWNAVISGHSQNEEDEEAA-SLFPLMHTEGIGFNQTTLSTVLK 321

Query: 83  KKNMAKARDL---FLAMPEKNSVSW-----SAMISGYIECGQLDKAVELFKVAPVKSVVA 134
                +A  +     A+  K+   +     +++I  Y +CG ++ A  +F+ +P+  +V 
Sbjct: 322 SIAALQANYMCRQIHALSLKSGFEFDNYVVNSLIDTYGKCGHVEDATRVFEESPIVDLVL 381

Query: 135 WTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQV 194
           +T++++ Y      ++   E+ L+L   M   GI+P++   SS+L  C+ LS+ + GKQV
Sbjct: 382 FTSLVTAY-----AQDGQGEEALRLYLEMQDRGIKPDSFVCSSLLNACASLSAYEQGKQV 436

Query: 195 HQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKG 254
           H  + K     D  A   L++MY KCG +EDA   F  I  + +V+W+AMI G AQHG G
Sbjct: 437 HVHILKFGFMSDIFAGNSLVNMYAKCGSIEDASCAFSRIPVRGIVSWSAMIGGLAQHGYG 496

Query: 255 EKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTC 314
           ++AL+LF +M   G+ P+ IT V++L ACNHAGLV     YF+SM   +GI    +HY C
Sbjct: 497 KEALQLFKQMLKVGVPPNHITLVSVLCACNHAGLVAEAKHYFNSMKILFGIEPMQEHYAC 556

Query: 315 MVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPAN 374
           M+DLLGRAGKL  A++L+ KMPF+    ++G LL A R+HK +DL E AA  L  L P  
Sbjct: 557 MIDLLGRAGKLEAAMELVNKMPFQANALVWGALLGAARIHKNIDLGEQAAEMLLALEP-E 615

Query: 375 AAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPE 434
            +G +V LANIYA++  WD VAR+R  MK+  V K PG SW+EV   V+ F  GDR H  
Sbjct: 616 KSGTHVLLANIYASVGMWDKVARVRRLMKDGKVKKEPGMSWLEVKDKVYTFIVGDRSHSR 675

Query: 435 LVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGT 494
              I+ KL EL   +K AGYVP +E  LH V    KEQLL  HSEKLA+AFGLI  P G 
Sbjct: 676 STEIYAKLDELSDLLKKAGYVPMVEIDLHDVERSEKEQLLYHHSEKLAVAFGLIATPPGA 735

Query: 495 PIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           PIRV KNLR+C DCH   K+IS I  REIIVRDT RFHHF++G+CSCG+YW
Sbjct: 736 PIRVKKNLRICFDCHTVLKFISKIVSREIIVRDTNRFHHFREGSCSCGEYW 786



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 105/383 (27%), Positives = 184/383 (48%), Gaps = 48/383 (12%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK- 68
           NS++  +AK  G   DA+ LFD IP   VVS+N + SC  ++SD    A   F  + +  
Sbjct: 49  NSLVILYAKC-GGFGDARSLFDAIPDRSVVSWNALFSC-YVHSDMHGEAVSLFHDMVLSG 106

Query: 69  ---DTASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMISGYIECGQLDKAV 121
              +  S ++MI+     ++  + R +   +     + ++ S +A++  Y + G L+ A 
Sbjct: 107 IRPNEFSLSSMINVCTGLEDSVQGRKIHGYLIKLGYDSDAFSANALVDMYAKVGILEDAS 166

Query: 122 ELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLG 181
            +F       +V+W A+I+G      V + +    L+LLR M   G+ PN  +LSS L  
Sbjct: 167 SVFDEIAKPDIVSWNAIIAGC-----VLHEYHHRALELLREMNKSGMCPNMFTLSSALKA 221

Query: 182 CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTW 241
           C+ ++  +LG+Q+H  + K  +  D+     LI MY KC  ++DA  +F  +  +D++ W
Sbjct: 222 CAGMALRELGRQLHSSLIKMDMGSDSFLGVGLIDMYSKCNSMDDARLVFKLMPERDMIAW 281

Query: 242 NAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL-----LACN------HAGLVD 290
           NA+ISG++Q+ + E+A  LF  M  EG+  +  T   +L     L  N      HA  + 
Sbjct: 282 NAVISGHSQNEEDEEAASLFPLMHTEGIGFNQTTLSTVLKSIAALQANYMCRQIHALSLK 341

Query: 291 LGIQY----FDSMVNDYGIAAKPDH---------------YTCMVDLLGRAGKLVEAVDL 331
            G ++     +S+++ YG     +                +T +V    + G+  EA+ L
Sbjct: 342 SGFEFDNYVVNSLIDTYGKCGHVEDATRVFEESPIVDLVLFTSLVTAYAQDGQGEEALRL 401

Query: 332 IKKMP---FKPQPAIFGTLLSAC 351
             +M     KP   +  +LL+AC
Sbjct: 402 YLEMQDRGIKPDSFVCSSLLNAC 424



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 65/247 (26%), Positives = 112/247 (45%), Gaps = 11/247 (4%)

Query: 166 LGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLED 225
           LGI+ N  +  SVL  C+    L LGKQVH +V  +    D      L+ +Y KCG   D
Sbjct: 4   LGIKCNEFAFPSVLKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCGGFGD 63

Query: 226 ACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNH 285
           A  LF  I  + VV+WNA+ S Y       +A+ LF  M   G++P+  +  +++  C  
Sbjct: 64  ARSLFDAIPDRSVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIRPNEFSLSSMINVCT- 122

Query: 286 AGLVD-LGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIF 344
            GL D +  +     +   G  +       +VD+  + G L +A  +  ++  KP    +
Sbjct: 123 -GLEDSVQGRKIHGYLIKLGYDSDAFSANALVDMYAKVGILEDASSVFDEIA-KPDIVSW 180

Query: 345 GTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMK- 403
             +++ C +H      E+    L  L   N +G    +  + +A+K    +A   L  + 
Sbjct: 181 NAIIAGCVLH------EYHHRALELLREMNKSGMCPNMFTLSSALKACAGMALRELGRQL 234

Query: 404 ENNVVKM 410
            ++++KM
Sbjct: 235 HSSLIKM 241


>gi|449470118|ref|XP_004152765.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 210/472 (44%), Positives = 298/472 (63%), Gaps = 6/472 (1%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVV 133
           N +I+ + +   + +AR +F AMP +N ++W+A++SGY+  G++++A   F+  PVK+++
Sbjct: 332 NALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGRMEEAKSFFEEMPVKNLL 391

Query: 134 AWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ 193
             T MISG       +N + ++GLKL + M   G  P   + +  L  CS L +L+ G+Q
Sbjct: 392 TLTVMISGL-----AQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTACSVLGALENGRQ 446

Query: 194 VHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGK 253
           +H  +         +    +ISMY KCG +E A  +F+ +   D+V+WN+MI+   QHG 
Sbjct: 447 LHAQLVHLGYESSLSVGNAMISMYAKCGVVEAAESVFVTMPSVDLVSWNSMIAALGQHGH 506

Query: 254 GEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYT 313
           G KA+ LFD+M  EG+ PD ITF+ +L AC+HAGLV+ G  YF+SM+  YGI    DHY 
Sbjct: 507 GVKAIELFDQMLKEGVFPDRITFLTVLTACSHAGLVEKGRHYFNSMLESYGITPCEDHYA 566

Query: 314 CMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPA 373
            MVDL  RAG    A  +I  MP KP   ++  LL+ CR+H  +DL   AA  LF L P 
Sbjct: 567 RMVDLFCRAGMFSYARIVIDSMPSKPGAPVWEALLAGCRIHGNMDLGIEAAEQLFKLMPQ 626

Query: 374 NAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHP 433
           N  G YV L+NIYA + +W+DVA++R  M++  V K P  SWIEV   VH F   D VHP
Sbjct: 627 ND-GTYVLLSNIYADVGRWNDVAKVRKLMRDQAVRKEPACSWIEVENKVHVFMVDDDVHP 685

Query: 434 ELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLG 493
           E++S++  L++L   MK  GY+PD +F LH +  E KE  L  HSEKLA+ FG++K+P  
Sbjct: 686 EVLSVYRYLEQLGLEMKKLGYIPDTKFVLHDMEYEQKEHALSTHSEKLAVGFGIMKLPPD 745

Query: 494 TPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
             +RVFKN+R+CGDCH A K++S + +REIIVRD  RFHHFK+G CSC DYW
Sbjct: 746 ATVRVFKNIRICGDCHNAFKFMSKVARREIIVRDRKRFHHFKNGDCSCRDYW 797



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 95/365 (26%), Positives = 166/365 (45%), Gaps = 104/365 (28%)

Query: 55  VVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIEC 114
           +V+A   F  +P +D  +W TMI+G+V+  ++  AR++F AM E    +W+AMISGY+ C
Sbjct: 208 MVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAMVENLGAAWNAMISGYVHC 267

Query: 115 GQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASS 174
           G   +A                                    L L R M  LGI+ +  +
Sbjct: 268 GCFQEA------------------------------------LTLCRKMRFLGIQFDDIT 291

Query: 175 LSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKD----TTALTPLISMYCKCGDLEDACKLF 230
            ++++  C+++ S Q+GKQ+H  + K+ L  +     +    LI++YCK   +++A K+F
Sbjct: 292 YTTIISACANVGSFQMGKQMHAYILKNELNPNHSFCLSVSNALITLYCKNNKVDEARKIF 351

Query: 231 LEIQRKDVVTWNAMISGY-------------------------------AQHGKGEKALR 259
             +  ++++TWNA++SGY                               AQ+G G++ L+
Sbjct: 352 YAMPVRNIITWNAILSGYVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLK 411

Query: 260 LFDKMKDEGMKPDSITFVALLLACN-----------HAGLVDLG----IQYFDSMVNDY- 303
           LF +M+ +G +P    F   L AC+           HA LV LG    +   ++M++ Y 
Sbjct: 412 LFKQMRLDGFEPCDFAFAGALTACSVLGALENGRQLHAQLVHLGYESSLSVGNAMISMYA 471

Query: 304 --GIAAKPD------------HYTCMVDLLGRAGKLVEAVDLIKKMPFK---PQPAIFGT 346
             G+    +             +  M+  LG+ G  V+A++L  +M  +   P    F T
Sbjct: 472 KCGVVEAAESVFVTMPSVDLVSWNSMIAALGQHGHGVKAIELFDQMLKEGVFPDRITFLT 531

Query: 347 LLSAC 351
           +L+AC
Sbjct: 532 VLTAC 536



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 78/314 (24%), Positives = 138/314 (43%), Gaps = 57/314 (18%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPV--KS 131
           N ++  + +  N+  AR LF  +P  ++++ + +I+ Y   G L+   E+F   P+  + 
Sbjct: 52  NRLLEMYCKSSNVVYARQLFEEIPNPDAIARTTLITAYCALGNLELGREIFNGTPLYMRD 111

Query: 132 VVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCS-HLSSLQL 190
            V + AMI+GY       N      L+L R M     RP+  + +SVL      + + Q 
Sbjct: 112 SVFYNAMITGY-----AHNGDGHSALELFRAMRRDDFRPDDFTFTSVLSALVLFVGNEQQ 166

Query: 191 GKQVHQLVFKSPL-CKDTTALTPLISMYCK--------CGDLEDACKLFLEIQRKDVVTW 241
             Q+H  V K+ + C  ++ L  L+S+Y K        C  +  A KLF E+ ++D +TW
Sbjct: 167 CGQMHCAVVKTGMGCVSSSVLNALLSVYVKRASELGIPCSAMVSARKLFDEMPKRDELTW 226

Query: 242 NAMISGYAQH-------------------------------GKGEKALRLFDKMKDEGMK 270
             MI+GY ++                               G  ++AL L  KM+  G++
Sbjct: 227 TTMITGYVRNDDLNGAREVFEAMVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQ 286

Query: 271 PDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTC------MVDLLGRAGK 324
            D IT+  ++ AC + G   +G Q    ++ +      P+H  C      ++ L  +  K
Sbjct: 287 FDDITYTTIISACANVGSFQMGKQMHAYILKN---ELNPNHSFCLSVSNALITLYCKNNK 343

Query: 325 LVEAVDLIKKMPFK 338
           + EA  +   MP +
Sbjct: 344 VDEARKIFYAMPVR 357



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 65/280 (23%), Positives = 130/280 (46%), Gaps = 25/280 (8%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLN--SDDVVAA 58
           M V+  + WN++L+G+    G++++A+  F+++P  ++++  +M+S +  N   D+ +  
Sbjct: 354 MPVRNIITWNAILSGYVNA-GRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKL 412

Query: 59  F-----DFFQRLPIKDTASWNTM-ISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYI 112
           F     D F+        +     + G ++      A+ + L      SV  +AMIS Y 
Sbjct: 413 FKQMRLDGFEPCDFAFAGALTACSVLGALENGRQLHAQLVHLGYESSLSVG-NAMISMYA 471

Query: 113 ECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNA 172
           +CG ++ A  +F   P   +V+W +MI+   + G+         ++L   M+  G+ P+ 
Sbjct: 472 KCGVVEAAESVFVTMPSVDLVSWNSMIAALGQHGH-----GVKAIELFDQMLKEGVFPDR 526

Query: 173 SSLSSVLLGCSHLSSLQLGKQVHQLVFKS---PLCKDTTALTPLISMYCKCGDLEDACKL 229
            +  +VL  CSH   ++ G+     + +S     C+D  A   ++ ++C+ G    A  +
Sbjct: 527 ITFLTVLTACSHAGLVEKGRHYFNSMLESYGITPCEDHYA--RMVDLFCRAGMFSYARIV 584

Query: 230 FLEIQRK-DVVTWNAMISGYAQHGKG----EKALRLFDKM 264
              +  K     W A+++G   HG      E A +LF  M
Sbjct: 585 IDSMPSKPGAPVWEALLAGCRIHGNMDLGIEAAEQLFKLM 624



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 42/122 (34%), Positives = 64/122 (52%), Gaps = 6/122 (4%)

Query: 163 MIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGD 222
           MI  G +P    L+ +L      S++   +Q+    F+     D  A T LI+ YC  G+
Sbjct: 39  MIASGFKPRGHFLNRLLEMYCKSSNVVYARQL----FEEIPNPDAIARTTLITAYCALGN 94

Query: 223 LEDACKLF--LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 280
           LE   ++F    +  +D V +NAMI+GYA +G G  AL LF  M+ +  +PD  TF ++L
Sbjct: 95  LELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSALELFRAMRRDDFRPDDFTFTSVL 154

Query: 281 LA 282
            A
Sbjct: 155 SA 156


>gi|449481169|ref|XP_004156102.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Cucumis sativus]
          Length = 642

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 208/461 (45%), Positives = 294/461 (63%), Gaps = 10/461 (2%)

Query: 89  ARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYV 148
           A  +F  M  ++  SW+A+++GY + G +D A+ +F+  P +++V+WT MISGY + G  
Sbjct: 188 AGKVFDNMTIRDVSSWNALLAGYTKSGCIDAALAIFERMPWRNIVSWTTMISGYSQSGL- 246

Query: 149 ENSWAEDGLKLLRMMI--GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKD 206
               A+  L L   M+    G+RPN  ++ SVL  C+ LS+L+ G+Q+H+L  +  L  +
Sbjct: 247 ----AQQALSLFDEMVKEDSGVRPNWVTIMSVLPACAQLSTLERGRQIHELACRMGLNSN 302

Query: 207 TTALTPLISMYCKCGDLEDACKLFLEIQR--KDVVTWNAMISGYAQHGKGEKALRLFDKM 264
            + L  L +MY KCG L DA   F ++ R  K+++ WN MI+ YA +G G +A+  F +M
Sbjct: 303 ASVLIALTAMYAKCGSLVDARNCFDKLNRNEKNLIAWNTMITAYASYGHGLQAVSTFREM 362

Query: 265 KDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGK 324
              G++PD ITF  LL  C+H+GLVD+G++YF+ M   Y I  + +HY C+ DLLGRAG+
Sbjct: 363 IQAGIQPDDITFTGLLSGCSHSGLVDVGLKYFNHMSTTYSINPRVEHYACVADLLGRAGR 422

Query: 325 LVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLAN 384
           L EA  L+ +MP    P+I+G+LL+ACR H+ L++AE AA  LF L P N  G YV L+N
Sbjct: 423 LAEASKLVGEMPMPAGPSIWGSLLAACRKHRNLEMAETAARKLFVLEPENT-GNYVLLSN 481

Query: 385 IYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKE 444
           +YA   +W +V ++R  +K     K PG SWIE+    H F  GD  HP+   I+  L+ 
Sbjct: 482 MYAEAGRWQEVDKLRAIVKSQGTKKSPGCSWIEINGKAHMFLGGDTSHPQGKEIYMFLEA 541

Query: 445 LEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRV 504
           L ++MK AGY PD  + LH + EE KE  L+ HSEKLA+AFG++  P  T +RV KNLR+
Sbjct: 542 LPEKMKAAGYFPDTSYVLHDISEEEKEFNLIAHSEKLAVAFGILNTPAETVLRVTKNLRI 601

Query: 505 CGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           CGDCH A  +IS I  RE+IVRD  RFHHFK G CSCGDYW
Sbjct: 602 CGDCHTAMVFISEIYGREVIVRDINRFHHFKGGCCSCGDYW 642



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 90/191 (47%), Gaps = 34/191 (17%)

Query: 178 VLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKD 237
           VL     L S+ +GK VH L+ +  L  D    T LI +Y KCG++ DA K+F  +  +D
Sbjct: 140 VLKSSVELLSVWMGKCVHGLILRIGLQFDLYVATSLIILYGKCGEINDAGKVFDNMTIRD 199

Query: 238 VVTWNA-------------------------------MISGYAQHGKGEKALRLFDKM-- 264
           V +WNA                               MISGY+Q G  ++AL LFD+M  
Sbjct: 200 VSSWNALLAGYTKSGCIDAALAIFERMPWRNIVSWTTMISGYSQSGLAQQALSLFDEMVK 259

Query: 265 KDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGK 324
           +D G++P+ +T +++L AC     ++ G Q  + +    G+ +       +  +  + G 
Sbjct: 260 EDSGVRPNWVTIMSVLPACAQLSTLERGRQIHE-LACRMGLNSNASVLIALTAMYAKCGS 318

Query: 325 LVEAVDLIKKM 335
           LV+A +   K+
Sbjct: 319 LVDARNCFDKL 329



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 67/288 (23%), Positives = 122/288 (42%), Gaps = 63/288 (21%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G++ DA ++FD +   DV S+N +L+     S  + AA   F+R+P ++  SW TMISG+
Sbjct: 183 GEINDAGKVFDNMTIRDVSSWNALLAG-YTKSGCIDAALAIFERMPWRNIVSWTTMISGY 241

Query: 81  VQKKNMAKARDLFLAMPEKNS---VSWSAMISGYIECGQ---LDKAVELFKVA------- 127
            Q     +A  LF  M +++S    +W  ++S    C Q   L++  ++ ++A       
Sbjct: 242 SQSGLAQQALSLFDEMVKEDSGVRPNWVTIMSVLPACAQLSTLERGRQIHELACRMGLNS 301

Query: 128 ------------------------------PVKSVVAWTAMISGYMKFGYVENSWAEDGL 157
                                           K+++AW  MI+ Y  +G+         +
Sbjct: 302 NASVLIALTAMYAKCGSLVDARNCFDKLNRNEKNLIAWNTMITAYASYGH-----GLQAV 356

Query: 158 KLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMY 217
              R MI  GI+P+  + + +L GCSH   + +G +    +        T ++ P +  Y
Sbjct: 357 STFREMIQAGIQPDDITFTGLLSGCSHSGLVDVGLKYFNHM------STTYSINPRVEHY 410

Query: 218 C-------KCGDLEDACKLFLEIQRKDVVT-WNAMISGYAQHGKGEKA 257
                   + G L +A KL  E+      + W ++++   +H   E A
Sbjct: 411 ACVADLLGRAGRLAEASKLVGEMPMPAGPSIWGSLLAACRKHRNLEMA 458


>gi|414867142|tpg|DAA45699.1| TPA: hypothetical protein ZEAMMB73_401104 [Zea mays]
          Length = 746

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 231/552 (41%), Positives = 326/552 (59%), Gaps = 41/552 (7%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQ----PDVVSYNIMLSCILLNSDDVV 56
           M ++  V WNS+++   +Q GK+  A ELF  + +    PDV++   + S +    D++ 
Sbjct: 229 MALRDLVTWNSIISA-NEQGGKVAAAVELFHGMMESGVCPDVLTLVSLASAVAQCGDELG 287

Query: 57  AAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQ 116
           A                   +  +V+++               + ++ +AM+  Y +  +
Sbjct: 288 A-----------------KSVHCYVRRRGWDVG----------DIIAGNAMVDMYAKMSK 320

Query: 117 LDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGL-GIRPNASSL 175
           +D A ++F   P + VV+W  +I+GYM     +N  A + +++   M    G++P   + 
Sbjct: 321 IDAAQKVFDNLPDRDVVSWNTLITGYM-----QNGLANEAIRIYNDMHNHEGLKPIQGTF 375

Query: 176 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR 235
            SVL   S+L  LQ G ++H L  K+ L  D    T LI +Y KCG L +A  LF  + R
Sbjct: 376 VSVLPAYSYLGGLQQGMRMHALSIKTGLNLDVYVTTCLIDLYAKCGKLVEAMFLFEHMPR 435

Query: 236 KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQY 295
           +    WNA+I+G   HG G KAL LF +M+ E +KPD +TFV+LL AC+HAGLVD G  +
Sbjct: 436 RSTGPWNAIIAGLGVHGHGAKALSLFSQMQQEEIKPDHVTFVSLLAACSHAGLVDQGRSF 495

Query: 296 FDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHK 355
           FD M   YGI     HYTCMVD+LGRAG+L EA + I+ MP KP  A++G LL ACR+H 
Sbjct: 496 FDLMQTVYGIVPIAKHYTCMVDMLGRAGQLDEAFEFIQSMPIKPDSAVWGALLGACRIHG 555

Query: 356 RLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSW 415
            +++ + A+ NLF L+P N  G YV ++N+YA + KWD V  +R  ++  N+ K PG+S 
Sbjct: 556 NVEMGKVASQNLFELDPEN-VGYYVLMSNMYAKIGKWDGVDAVRSLVRRQNLQKTPGWSS 614

Query: 416 IEVGTVVHEFRSGDRV--HPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQL 473
           +EV   V  F SG +   HP+   I   L +L  +MK AGYVPD  F L  V E+ KEQ+
Sbjct: 615 MEVKGSVSVFYSGTQTEPHPQHEEIQRGLHDLLAKMKSAGYVPDYSFVLQDVEEDEKEQI 674

Query: 474 LLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHH 533
           L  HSE+LAIAFG+I  P GTP+ ++KNLRVCGDCH ATKYIS I +REIIVRD  RFHH
Sbjct: 675 LNNHSERLAIAFGIINTPPGTPLHIYKNLRVCGDCHSATKYISKITEREIIVRDANRFHH 734

Query: 534 FKDGTCSCGDYW 545
           FKDG CSCGD+W
Sbjct: 735 FKDGHCSCGDFW 746



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 100/365 (27%), Positives = 176/365 (48%), Gaps = 22/365 (6%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G++ +A  +FD++P+ DV ++N MLS +  N+     A     R+  +  A     +S  
Sbjct: 116 GRVAEAYRVFDEMPERDVPAWNAMLSGLCRNT-RAADAVTLLGRMVGEGVAGDAVTLSSV 174

Query: 81  VQKKNMAKARDLFLAM---PEKNSVSW-----SAMISGYIECGQLDKAVELFKVAPVKSV 132
           +    +   R L L M     K+ +S      +A+I  Y + G L +A  +F    ++ +
Sbjct: 175 LPMCVVLGDRALALVMHVYAVKHGLSGELFVCNALIDVYGKLGMLTEAHWVFGGMALRDL 234

Query: 133 VAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGK 192
           V W ++IS   + G V  +     ++L   M+  G+ P+  +L S+    +        K
Sbjct: 235 VTWNSIISANEQGGKVAAA-----VELFHGMMESGVCPDVLTLVSLASAVAQCGDELGAK 289

Query: 193 QVHQLVFKSPL-CKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQH 251
            VH  V +      D  A   ++ MY K   ++ A K+F  +  +DVV+WN +I+GY Q+
Sbjct: 290 SVHCYVRRRGWDVGDIIAGNAMVDMYAKMSKIDAAQKVFDNLPDRDVVSWNTLITGYMQN 349

Query: 252 GKGEKALRLFDKMKD-EGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPD 310
           G   +A+R+++ M + EG+KP   TFV++L A ++ G +  G++   ++    G+     
Sbjct: 350 GLANEAIRIYNDMHNHEGLKPIQGTFVSVLPAYSYLGGLQQGMR-MHALSIKTGLNLDVY 408

Query: 311 HYTCMVDLLGRAGKLVEAVDLIKKMPFK---PQPAIFGTLLSACRVHKRLDLAEFAAMNL 367
             TC++DL  + GKLVEA+ L + MP +   P  AI   L      H    L+ F+ M  
Sbjct: 409 VTTCLIDLYAKCGKLVEAMFLFEHMPRRSTGPWNAIIAGL--GVHGHGAKALSLFSQMQQ 466

Query: 368 FNLNP 372
             + P
Sbjct: 467 EEIKP 471



 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 77/251 (30%), Positives = 118/251 (47%), Gaps = 17/251 (6%)

Query: 92  LFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENS 151
           L L +   N  +  +++  Y+  G++ +A  +F   P + V AW AM+SG  +     N+
Sbjct: 93  LRLGLLHPNVFASGSLVHAYLRFGRVAEAYRVFDEMPERDVPAWNAMLSGLCR-----NT 147

Query: 152 WAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALT 211
            A D + LL  M+G G+  +A +LSSVL  C  L    L   +H    K  L  +     
Sbjct: 148 RAADAVTLLGRMVGEGVAGDAVTLSSVLPMCVVLGDRALALVMHVYAVKHGLSGELFVCN 207

Query: 212 PLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKP 271
            LI +Y K G L +A  +F  +  +D+VTWN++IS   Q GK   A+ LF  M + G+ P
Sbjct: 208 ALIDVYGKLGMLTEAHWVFGGMALRDLVTWNSIISANEQGGKVAAAVELFHGMMESGVCP 267

Query: 272 DSITFVALLLACNHAGLVDLGIQYFDSMVNDYG------IAAKPDHYTCMVDLLGRAGKL 325
           D +T V+L  A    G  +LG +     V   G      IA        MVD+  +  K+
Sbjct: 268 DVLTLVSLASAVAQCG-DELGAKSVHCYVRRRGWDVGDIIAGN-----AMVDMYAKMSKI 321

Query: 326 VEAVDLIKKMP 336
             A  +   +P
Sbjct: 322 DAAQKVFDNLP 332


>gi|347954542|gb|AEP33771.1| organelle transcript processing 82, partial [Thlaspi arvense]
          Length = 673

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 235/579 (40%), Positives = 333/579 (57%), Gaps = 52/579 (8%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
           ++ L     Q G+L+DA ++FD+    DVVSY  +++    +S ++ +A + F  +P+KD
Sbjct: 104 HTSLISMYAQNGRLEDAHKVFDRSSHRDVVSYTALITG-YASSGNIRSAQEMFDEIPVKD 162

Query: 70  TASWNTMISGFVQKKNMAKARDLFLAM------PEKNSV--------------------S 103
             SWN MISG+ +  +  +A +LF  M      P++ ++                    S
Sbjct: 163 VVSWNAMISGYAETGSYKEALELFKEMMKTNVRPDEGTMVTVLSACAQSRSVELGRQVHS 222

Query: 104 W-------------SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVEN 150
           W             +A+I  Y +CGQ++ A  LF+    K VV+W  +I GY      + 
Sbjct: 223 WIDDHGFGSNLKIVNALIDLYSKCGQVETACGLFEGLSCKDVVSWNTLIGGYTHMNLYK- 281

Query: 151 SWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTAL 210
               + L L + M+  G  PN  ++ S+L  C+HL ++ +G+ +H  V+     KD T  
Sbjct: 282 ----EALLLFQEMLRSGESPNDVTIVSILPACAHLGAIDIGRWIH--VYIDKKLKDVTNA 335

Query: 211 ----TPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKD 266
               T LI MY KCGD+E A ++F  +  K + +WNAMI G+A HG+      LF +M+ 
Sbjct: 336 PSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFGFAMHGRANAGFDLFSRMRK 395

Query: 267 EGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLV 326
            G++PD ITFV LL AC+H+G +DLG   F SM  DY I  K +HY CM+DLLG +G   
Sbjct: 396 NGIEPDDITFVGLLSACSHSGKLDLGRHIFKSMTQDYDITPKLEHYGCMIDLLGHSGLFK 455

Query: 327 EAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIY 386
           EA ++IK MP +P   I+ +LL ACR H  L+LAE  A NL  + P N  G YV L+NIY
Sbjct: 456 EAKEMIKTMPMEPDGVIWCSLLKACRRHGNLELAESFARNLMKVEPENP-GSYVLLSNIY 514

Query: 387 AAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELE 446
           A   +WD+VA++R  +    + K+PG S IE+ + VHEF  GD++HP    I+  L+E+E
Sbjct: 515 ATAGEWDEVAKVRALLNGKGMKKVPGCSSIEIDSEVHEFIVGDKLHPRNREIYGMLEEME 574

Query: 447 KRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCG 506
             ++ AG+VPD    L  + EE KE  L  HSEKLAIAFGLI    GT + + KNLRVC 
Sbjct: 575 ALLEEAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCR 634

Query: 507 DCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           +CH ATK +S I KREII RD TRFHHF+DG CSC D+W
Sbjct: 635 NCHEATKLVSKIYKREIIARDRTRFHHFRDGVCSCNDFW 673



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 108/436 (24%), Positives = 177/436 (40%), Gaps = 108/436 (24%)

Query: 53  DDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPE----KNSVSW---- 104
           D    A   F  +   +   WNTM+ G+    +   A  L++ M       NS ++    
Sbjct: 14  DGFPYAISVFATIQEPNQLIWNTMLRGYALSSDPVSALKLYVVMISLGLLPNSYTFPFLL 73

Query: 105 -------------------------------SAMISGYIECGQLDKAVELFKVAPVKSVV 133
                                          +++IS Y + G+L+ A ++F  +  + VV
Sbjct: 74  KSCAKSKAFEEGQQIHGHVLKLGYEPDLYVHTSLISMYAQNGRLEDAHKVFDRSSHRDVV 133

Query: 134 AWTAMISGY--------------------------MKFGYVENSWAEDGLKLLRMMIGLG 167
           ++TA+I+GY                          M  GY E    ++ L+L + M+   
Sbjct: 134 SYTALITGYASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEMMKTN 193

Query: 168 IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC 227
           +RP+  ++ +VL  C+   S++LG+QVH  +       +   +  LI +Y KCG +E AC
Sbjct: 194 VRPDEGTMVTVLSACAQSRSVELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGQVETAC 253

Query: 228 KLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG 287
            LF  +  KDVV+WN +I GY      ++AL LF +M   G  P+ +T V++L AC H G
Sbjct: 254 GLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTIVSILPACAHLG 313

Query: 288 LVDLGIQ---YFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEA---------------- 328
            +D+G     Y D  + D  +   P   T ++D+  + G +  A                
Sbjct: 314 AIDIGRWIHVYIDKKLKD--VTNAPSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWN 371

Query: 329 ---------------VDLIKKM---PFKPQPAIFGTLLSACRVHKRLDLAE--FAAMNL- 367
                           DL  +M     +P    F  LLSAC    +LDL    F +M   
Sbjct: 372 AMIFGFAMHGRANAGFDLFSRMRKNGIEPDDITFVGLLSACSHSGKLDLGRHIFKSMTQD 431

Query: 368 FNLNPA-NAAGCYVQL 382
           +++ P     GC + L
Sbjct: 432 YDITPKLEHYGCMIDL 447


>gi|449445033|ref|XP_004140278.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Cucumis sativus]
          Length = 679

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 208/461 (45%), Positives = 294/461 (63%), Gaps = 10/461 (2%)

Query: 89  ARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYV 148
           A  +F  M  ++  SW+A+++GY + G +D A+ +F+  P +++V+WT MISGY + G  
Sbjct: 225 AGKVFDNMTIRDVSSWNALLAGYTKSGCIDAALAIFERMPWRNIVSWTTMISGYSQSGL- 283

Query: 149 ENSWAEDGLKLLRMMI--GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKD 206
               A+  L L   M+    G+RPN  ++ SVL  C+ LS+L+ G+Q+H+L  +  L  +
Sbjct: 284 ----AQQALSLFDEMVKEDSGVRPNWVTIMSVLPACAQLSTLERGRQIHELACRMGLNSN 339

Query: 207 TTALTPLISMYCKCGDLEDACKLFLEIQR--KDVVTWNAMISGYAQHGKGEKALRLFDKM 264
            + L  L +MY KCG L DA   F ++ R  K+++ WN MI+ YA +G G +A+  F +M
Sbjct: 340 ASVLIALTAMYAKCGSLVDARNCFDKLNRNEKNLIAWNTMITAYASYGHGLQAVSTFREM 399

Query: 265 KDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGK 324
              G++PD ITF  LL  C+H+GLVD+G++YF+ M   Y I  + +HY C+ DLLGRAG+
Sbjct: 400 IQAGIQPDDITFTGLLSGCSHSGLVDVGLKYFNHMSTTYSINPRVEHYACVADLLGRAGR 459

Query: 325 LVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLAN 384
           L EA  L+ +MP    P+I+G+LL+ACR H+ L++AE AA  LF L P N  G YV L+N
Sbjct: 460 LAEASKLVGEMPMPAGPSIWGSLLAACRKHRNLEMAETAARKLFVLEPENT-GNYVLLSN 518

Query: 385 IYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKE 444
           +YA   +W +V ++R  +K     K PG SWIE+    H F  GD  HP+   I+  L+ 
Sbjct: 519 MYAEAGRWQEVDKLRAIVKSQGTKKSPGCSWIEINGKAHMFLGGDTSHPQGKEIYMFLEA 578

Query: 445 LEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRV 504
           L ++MK AGY PD  + LH + EE KE  L+ HSEKLA+AFG++  P  T +RV KNLR+
Sbjct: 579 LPEKMKAAGYFPDTSYVLHDISEEEKEFNLIAHSEKLAVAFGILNTPAETVLRVTKNLRI 638

Query: 505 CGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           CGDCH A  +IS I  RE+IVRD  RFHHFK G CSCGDYW
Sbjct: 639 CGDCHTAMVFISEIYGREVIVRDINRFHHFKGGCCSCGDYW 679



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 71/264 (26%), Positives = 120/264 (45%), Gaps = 39/264 (14%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI 164
           S M++ Y   G +D +V +F      S + + +MI  Y ++G+ E + A         M 
Sbjct: 109 SKMVAFYASSGDIDSSVSVFNGIGEPSSLLFNSMIRAYARYGFAERTVAT-----YFSMH 163

Query: 165 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 224
             G   +  +   VL     L S+ +GK VH L+ +  L  D    T LI +Y KCG++ 
Sbjct: 164 SWGFTGDYFTFPFVLKSSVELLSVWMGKCVHGLILRIGLQFDLYVATSLIILYGKCGEIN 223

Query: 225 DACKLFLEIQRKDVVTWNA-------------------------------MISGYAQHGK 253
           DA K+F  +  +DV +WNA                               MISGY+Q G 
Sbjct: 224 DAGKVFDNMTIRDVSSWNALLAGYTKSGCIDAALAIFERMPWRNIVSWTTMISGYSQSGL 283

Query: 254 GEKALRLFDKM--KDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDH 311
            ++AL LFD+M  +D G++P+ +T +++L AC     ++ G Q  + +    G+ +    
Sbjct: 284 AQQALSLFDEMVKEDSGVRPNWVTIMSVLPACAQLSTLERGRQIHE-LACRMGLNSNASV 342

Query: 312 YTCMVDLLGRAGKLVEAVDLIKKM 335
              +  +  + G LV+A +   K+
Sbjct: 343 LIALTAMYAKCGSLVDARNCFDKL 366



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 67/288 (23%), Positives = 121/288 (42%), Gaps = 63/288 (21%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G++ DA ++FD +   DV S+N +L+     S  + AA   F+R+P ++  SW TMISG+
Sbjct: 220 GEINDAGKVFDNMTIRDVSSWNALLAG-YTKSGCIDAALAIFERMPWRNIVSWTTMISGY 278

Query: 81  VQKKNMAKARDLFLAMPEKNS---VSWSAMISGYIECGQ---LDKAVELFKVA------- 127
            Q     +A  LF  M +++S    +W  ++S    C Q   L++  ++ ++A       
Sbjct: 279 SQSGLAQQALSLFDEMVKEDSGVRPNWVTIMSVLPACAQLSTLERGRQIHELACRMGLNS 338

Query: 128 ------------------------------PVKSVVAWTAMISGYMKFGYVENSWAEDGL 157
                                           K+++AW  MI+ Y  +G+         +
Sbjct: 339 NASVLIALTAMYAKCGSLVDARNCFDKLNRNEKNLIAWNTMITAYASYGH-----GLQAV 393

Query: 158 KLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMY 217
              R MI  GI+P+  + + +L GCSH   + +G +    +        T ++ P +  Y
Sbjct: 394 STFREMIQAGIQPDDITFTGLLSGCSHSGLVDVGLKYFNHM------STTYSINPRVEHY 447

Query: 218 C-------KCGDLEDACKLFLEI-QRKDVVTWNAMISGYAQHGKGEKA 257
                   + G L +A KL  E+        W ++++   +H   E A
Sbjct: 448 ACVADLLGRAGRLAEASKLVGEMPMPAGPSIWGSLLAACRKHRNLEMA 495



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/180 (22%), Positives = 78/180 (43%), Gaps = 23/180 (12%)

Query: 170 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 229
           P   S + V    + L+ L+LG QVH  +    L       + +++ Y   GD++ +  +
Sbjct: 68  PPILSYAPVFQFLTGLNMLKLGHQVHAHMLLRGLQPTALVGSKMVAFYASSGDIDSSVSV 127

Query: 230 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA------- 282
           F  I     + +N+MI  YA++G  E+ +  +  M   G   D  TF  +L +       
Sbjct: 128 FNGIGEPSSLLFNSMIRAYARYGFAERTVATYFSMHSWGFTGDYFTFPFVLKSSVELLSV 187

Query: 283 ----CNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 338
               C H  ++ +G+Q+      D  +A      T ++ L G+ G++ +A  +   M  +
Sbjct: 188 WMGKCVHGLILRIGLQF------DLYVA------TSLIILYGKCGEINDAGKVFDNMTIR 235


>gi|302820798|ref|XP_002992065.1| hypothetical protein SELMODRAFT_134581 [Selaginella moellendorffii]
 gi|300140187|gb|EFJ06914.1| hypothetical protein SELMODRAFT_134581 [Selaginella moellendorffii]
          Length = 771

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 227/553 (41%), Positives = 341/553 (61%), Gaps = 16/553 (2%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           + ++   +W+ +L  +A Q G L  A++ FD++PQ D +++  M + +L +  ++  A +
Sbjct: 227 IKLRNAASWSLLLLTYA-QNGHLDLAKKSFDRMPQRDSIAFTAM-TAVLSDQGELRGARE 284

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKN---SVSWSAMISGYIECGQL 117
             + L   D  +WN ++ G+ +  ++ + R LF AM  +    +V    +++ Y +CG++
Sbjct: 285 MLRYLSAVDVIAWNALLEGYSRTGDLDEVRRLFSAMEHRTVATTVVAGTLVNLYGKCGRV 344

Query: 118 DKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSS 177
           D A  +    PV++ V+WTAMI+ Y      +N  A + + L + M   G  P+  +L S
Sbjct: 345 DDARRVLDAMPVRTSVSWTAMIAAY-----AQNGNAAEAINLFQCMDLEGAEPSDITLIS 399

Query: 178 VLLGCSHLSSLQLGKQVHQLVFKSPL-CKDTTALTPLISMYCKCGDLEDACKLF--LEIQ 234
           V+  C+ L +L LGK++H  +  SPL  +    L  +I+MY KCG+LE A ++F  + ++
Sbjct: 400 VVDSCAVLGTLSLGKRIHARIRSSPLFSQSLMLLNAVITMYGKCGNLELAREVFESVPLR 459

Query: 235 RKDVVTWNAMISGYAQHGKGEKALRLFDKMK-DEGMKPDSITFVALLLACNHAGLVDLGI 293
            + VVTW AMI  YAQ+G GE+A+ LF +M  D G +P+ +TF+++L AC+H G ++   
Sbjct: 460 TRSVVTWTAMIRAYAQNGVGEEAIELFQEMVIDGGTEPNRVTFLSVLSACSHLGQLEQAW 519

Query: 294 QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLI-KKMPFKPQPAIFGTLLSACR 352
           ++F SM  D+G+    DHY C+VDLLGRAG+L EA  L+ +   F+     +   LSAC+
Sbjct: 520 EHFCSMGPDFGVPPAGDHYCCLVDLLGRAGRLGEAEKLLLRHKDFEADVVCWIAFLSACQ 579

Query: 353 VHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPG 412
           ++  L+ ++ AA  +  L P N AG  V L+N+YAA  +  DVARIR  MK + V K  G
Sbjct: 580 MNGDLERSQRAAKRVSELEPENVAG-RVLLSNVYAAKGRRADVARIRNEMKSSGVKKFAG 638

Query: 413 YSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQ 472
            SWIE+   VHEF   D  HP  + I+ +L+ L + +K AGYVPD +  L  V EE K Q
Sbjct: 639 RSWIEINNRVHEFMVSDVSHPRKLEIYSELERLHREIKEAGYVPDTKMVLRDVDEEKKAQ 698

Query: 473 LLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFH 532
           LL +HSE+LA+A G+I  P GT +RV KNLRVC DCH ATK+IS I  R+IIVRDT+RFH
Sbjct: 699 LLGYHSERLAMALGIISTPPGTTLRVVKNLRVCSDCHAATKFISQIVGRQIIVRDTSRFH 758

Query: 533 HFKDGTCSCGDYW 545
           HFKDG CSCGDYW
Sbjct: 759 HFKDGVCSCGDYW 771



 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 84/346 (24%), Positives = 163/346 (47%), Gaps = 46/346 (13%)

Query: 6   TVNWNSVLAGFAKQRGKLKDAQELFDKIP---QPDVVSYNIMLSCILLNSDDVVAAFDFF 62
           TV   SVL G+A   G L +AQELFD+I      D  + N M++    N+  V  A   F
Sbjct: 167 TVTCTSVLQGYA-HNGHLAEAQELFDRIGGAGDRDATACNAMIAAYGKNAR-VDLAEGLF 224

Query: 63  QRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVE 122
            ++ +++ ASW+ ++  + Q  ++  A+  F  MP+++S++++AM +   + G+L  A E
Sbjct: 225 AQIKLRNAASWSLLLLTYAQNGHLDLAKKSFDRMPQRDSIAFTAMTAVLSDQGELRGARE 284

Query: 123 LFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGC 182
           + +      V+AW A++ GY + G ++        ++ R+   +  R  A+         
Sbjct: 285 MLRYLSAVDVIAWNALLEGYSRTGDLD--------EVRRLFSAMEHRTVAT--------- 327

Query: 183 SHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWN 242
                                   T     L+++Y KCG ++DA ++   +  +  V+W 
Sbjct: 328 ------------------------TVVAGTLVNLYGKCGRVDDARRVLDAMPVRTSVSWT 363

Query: 243 AMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVND 302
           AMI+ YAQ+G   +A+ LF  M  EG +P  IT ++++ +C   G + LG +    + + 
Sbjct: 364 AMIAAYAQNGNAAEAINLFQCMDLEGAEPSDITLISVVDSCAVLGTLSLGKRIHARIRSS 423

Query: 303 YGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLL 348
              +        ++ + G+ G L  A ++ + +P + +  +  T +
Sbjct: 424 PLFSQSLMLLNAVITMYGKCGNLELAREVFESVPLRTRSVVTWTAM 469



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 101/425 (23%), Positives = 171/425 (40%), Gaps = 87/425 (20%)

Query: 22  KLKDAQELFDKI---PQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMIS 78
           KL +A+ L D+I   P  D      +L  +     D  AA   F R+ + +  SW+ +I 
Sbjct: 22  KLHEAKILHDEIARSPHGDNRRLTNLLIDLFGKCGDPDAARAVFNRVRLPNEYSWSCIIQ 81

Query: 79  GFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFK-VAPVKSVVAWTA 137
            +V    +  AR LF +MP  ++ +W+ MI+ Y    +LD A ELF  +   + VV+W  
Sbjct: 82  AYVSSSRIHDARALFDSMPGFDAFTWNIMIAAYARINRLDDARELFHGMISGRDVVSWAI 141

Query: 138 MISGYMKF--------------------------GYVENSWAEDGLKLLRMMIGLGIRP- 170
           +++GY +                           GY  N    +  +L   + G G R  
Sbjct: 142 LVAGYARHDRLEEASALFRRMPLWDTVTCTSVLQGYAHNGHLAEAQELFDRIGGAGDRDA 201

Query: 171 -----------------------------NASSLSSVLLGCSHLSSLQLGKQVHQLVFKS 201
                                        NA+S S +LL  +    L L K+     F  
Sbjct: 202 TACNAMIAAYGKNARVDLAEGLFAQIKLRNAASWSLLLLTYAQNGHLDLAKK----SFDR 257

Query: 202 PLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLF 261
              +D+ A T + ++    G+L  A ++   +   DV+ WNA++ GY++ G  ++  RLF
Sbjct: 258 MPQRDSIAFTAMTAVLSDQGELRGAREMLRYLSAVDVIAWNALLEGYSRTGDLDEVRRLF 317

Query: 262 DKMKDEGMKPDSI--TFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLL 319
             M+   +    +  T V L   C   G VD   +  D+M     ++     +T M+   
Sbjct: 318 SAMEHRTVATTVVAGTLVNLYGKC---GRVDDARRVLDAMPVRTSVS-----WTAMIAAY 369

Query: 320 GRAGKLVEAVDLIKKMPFK-PQP------------AIFGTLLSACRVHKRLDLAEFAAMN 366
            + G   EA++L + M  +  +P            A+ GTL    R+H R+  +   + +
Sbjct: 370 AQNGNAAEAINLFQCMDLEGAEPSDITLISVVDSCAVLGTLSLGKRIHARIRSSPLFSQS 429

Query: 367 LFNLN 371
           L  LN
Sbjct: 430 LMLLN 434



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 37/166 (22%), Positives = 69/166 (41%), Gaps = 8/166 (4%)

Query: 172 ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFL 231
           A      +  C+    L   K +H  + +SP   +      LI ++ KCGD + A  +F 
Sbjct: 7   ARRFEERIRACAIGRKLHEAKILHDEIARSPHGDNRRLTNLLIDLFGKCGDPDAARAVFN 66

Query: 232 EIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDL 291
            ++  +  +W+ +I  Y    +   A  LFD M       D+ T+  ++ A      +D 
Sbjct: 67  RVRLPNEYSWSCIIQAYVSSSRIHDARALFDSMP----GFDAFTWNIMIAAYARINRLDD 122

Query: 292 GIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPF 337
             + F  M++   + +    +  +V    R  +L EA  L ++MP 
Sbjct: 123 ARELFHGMISGRDVVS----WAILVAGYARHDRLEEASALFRRMPL 164


>gi|449446466|ref|XP_004140992.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Cucumis sativus]
          Length = 638

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 217/553 (39%), Positives = 344/553 (62%), Gaps = 15/553 (2%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M +KT +  +++L     + G +  A+++FD++P   +VS+N M+  +  N ++   A D
Sbjct: 93  MGLKTDLLTSNILINMYSKCGSVDFARQVFDEMPSRSLVSWNTMIGSLTQNGEEN-EALD 151

Query: 61  FFQRLPIKDTA----SWNTMISGFVQKKNMAKARDLFL----AMPEKNSVSWSAMISGYI 112
              ++  + T     + ++++     K  +++ + L      A  + N    +A++  Y 
Sbjct: 152 LLLQMQREGTPFSEFTISSVLCACAAKCALSECQLLHAFAIKAAMDLNVFVATALLDVYA 211

Query: 113 ECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNA 172
           +CG +  AV +F+  P +SVV W++M +GY     V+N   E  L L R     G++ + 
Sbjct: 212 KCGLMKDAVCVFESMPDRSVVTWSSMAAGY-----VQNEMYEQALALFRKAWETGLKHDQ 266

Query: 173 SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLE 232
             +SSV+  C+ L+++  GKQ++ L+ KS  C +    + LI MY KCG +E++ K+F +
Sbjct: 267 FLMSSVICACAGLAAMIEGKQMNALLSKSGFCSNIFVASSLIDMYAKCGGIEESYKVFRD 326

Query: 233 IQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 292
           +++++VV WNAMISG ++H +  + + LF+KM+  G+ P+ +TFV++L AC H GLV  G
Sbjct: 327 VEKRNVVLWNAMISGLSRHARSLEVMILFEKMQQMGLSPNDVTFVSVLSACGHMGLVRKG 386

Query: 293 IQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACR 352
            +YFD M  ++ +A    HY+CMVD L RAG++ EA DLI K+PF    +++G+LL++CR
Sbjct: 387 QKYFDLMTKEHHLAPNVFHYSCMVDTLSRAGQIFEAYDLISKLPFNASASMWGSLLASCR 446

Query: 353 VHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPG 412
            H  L+LAE AA  LF++ P N +G Y+ L+N+YAA  KWD+VA++R  +KE++V K  G
Sbjct: 447 THGNLELAEVAAKKLFDIEPHN-SGNYLLLSNMYAANGKWDEVAKMRKLLKESDVKKERG 505

Query: 413 YSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQ 472
            SWIE+   VH F  G+R HP++V I+ KL E+   ++  GY  + +  LH VGE +K++
Sbjct: 506 KSWIEIKDKVHLFMVGERNHPKIVEIYSKLNEVMDELQKLGYKVETQHDLHQVGESIKQE 565

Query: 473 LLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFH 532
           LL  HSEKLA   GL+ +P   PIR+ KNLR+CGDCH   K  S    R++IVRDT RFH
Sbjct: 566 LLRHHSEKLAFTMGLLFLPPNAPIRIMKNLRICGDCHSFMKLASKFFCRDVIVRDTNRFH 625

Query: 533 HFKDGTCSCGDYW 545
           HFK+G CSCGD+W
Sbjct: 626 HFKNGCCSCGDFW 638



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 81/171 (47%), Gaps = 11/171 (6%)

Query: 171 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 230
           + S +  +L  C+    L  GK  H  +    L  D      LI+MY KCG ++ A ++F
Sbjct: 63  HVSFVHEILKLCAKRKLLLQGKACHAQILLMGLKTDLLTSNILINMYSKCGSVDFARQVF 122

Query: 231 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC-NHAGLV 289
            E+  + +V+WN MI    Q+G+  +AL L  +M+ EG      T  ++L AC     L 
Sbjct: 123 DEMPSRSLVSWNTMIGSLTQNGEENEALDLLLQMQREGTPFSEFTISSVLCACAAKCALS 182

Query: 290 DLGIQYFDSMVNDYGIAAKPDH----YTCMVDLLGRAGKLVEAVDLIKKMP 336
           +        +++ + I A  D      T ++D+  + G + +AV + + MP
Sbjct: 183 EC------QLLHAFAIKAAMDLNVFVATALLDVYAKCGLMKDAVCVFESMP 227


>gi|224114351|ref|XP_002332376.1| predicted protein [Populus trichocarpa]
 gi|222832200|gb|EEE70677.1| predicted protein [Populus trichocarpa]
          Length = 660

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 230/534 (43%), Positives = 325/534 (60%), Gaps = 16/534 (2%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWN-----T 75
           G L  A+++FDK+    VVS+  M+  +    D    A   F R+   +    N      
Sbjct: 134 GCLVSARKVFDKMEDKTVVSWATMIG-VHAQWDQPNEAVRLFDRMMKSENVKPNEVTLVN 192

Query: 76  MISGFVQKKNMAKARDLFLAMPE----KNSVSWSAMISGYIECGQLDKAVELFKVAPVKS 131
           +++   + +++A  + +   + E    ++ V  + ++  Y +CG +  A +LF  A  K+
Sbjct: 193 VLTACARARDLAMVKRIHEYIDEHGFGRHVVLNTVLMDVYCKCGCVQLARDLFDKAQEKN 252

Query: 132 VVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLG 191
           + +W  MI+G+     VE+S  E+ L L R M   GI+ +  +++S+LL C+HL +L+LG
Sbjct: 253 LFSWNIMINGH-----VEDSNYEEALLLFREMQTKGIKGDKVTMASLLLACTHLGALELG 307

Query: 192 KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQH 251
           K +H  + K  +  D    T L+ MY KCG +E A ++F E+  KDV+TW A+I G A  
Sbjct: 308 KWLHAYIKKQRIDVDVALGTALVDMYAKCGSIETAIQVFHEMPEKDVMTWTALILGLAMC 367

Query: 252 GKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDH 311
           G+ E AL+ FD+M  +G+KPD+ITFV +L AC+HAG VD GI +F+SM + YGI    +H
Sbjct: 368 GQAENALQYFDEMHIKGVKPDAITFVGVLAACSHAGFVDEGISHFNSMSDTYGIQPTIEH 427

Query: 312 YTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLN 371
           Y  +VD+LGRAG++ EA +LIK MP  P   + G LL ACR+H  L+ AE AA  L  ++
Sbjct: 428 YGGLVDILGRAGRIAEAEELIKSMPMAPDQFVLGGLLGACRIHGNLEAAERAAKQLLEID 487

Query: 372 PANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRV 431
           P + +G YV L+NIY + KKW++  R R  M E  + K PG S IEV  VVHEF  GD  
Sbjct: 488 PYH-SGTYVLLSNIYKSSKKWEEAKRTRELMAERGMRKPPGCSQIEVHGVVHEFVKGDSS 546

Query: 432 HPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVP 491
           H +   I+E L+++  ++K AGYVPD    L  + EE KE  L  HSEKLAIAFGL+   
Sbjct: 547 HRQSSEINEMLEDMISKLKNAGYVPDKSEVLFDMAEEEKETELSLHSEKLAIAFGLLSTS 606

Query: 492 LGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           +GTPIRV KNLR+C DCH ATK IS +  REIIVRD  RFHHFKDGTCSC  +W
Sbjct: 607 VGTPIRVVKNLRICSDCHSATKLISKLYNREIIVRDRNRFHHFKDGTCSCRGFW 660



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 90/330 (27%), Positives = 166/330 (50%), Gaps = 19/330 (5%)

Query: 18  KQRGKLKDAQELFDKIPQPDVVSYN-IMLSCILLNSDDVVAAFDFFQRLPIKD-TASWNT 75
           ++ G L+ A+ +F +IP P   + N I+  C   N      A  F+Q + ++       T
Sbjct: 33  QESGSLQYARLVFSQIPNPTSYTCNSIIRGCTDKNLHQ--EALLFYQEMMVQGLIPDRYT 90

Query: 76  MISGFVQKKNMAKARDLFLAMPE----KNSVSWSAMISGYIECGQLDKAVELFKVAPVKS 131
             S F   +N ++ + +     +     ++ + + +++ Y  CG L  A ++F     K+
Sbjct: 91  FPSLFKSCRNSSEGKQIHCHSTKLGFASDTYAQNTLMNMYSNCGCLVSARKVFDKMEDKT 150

Query: 132 VVAWTAMISGYMKFGYVENSWAE--DGLKLL-RMMIGLGIRPNASSLSSVLLGCSHLSSL 188
           VV+W  MI        V   W +  + ++L  RMM    ++PN  +L +VL  C+    L
Sbjct: 151 VVSWATMIG-------VHAQWDQPNEAVRLFDRMMKSENVKPNEVTLVNVLTACARARDL 203

Query: 189 QLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGY 248
            + K++H+ + +    +     T L+ +YCKCG ++ A  LF + Q K++ +WN MI+G+
Sbjct: 204 AMVKRIHEYIDEHGFGRHVVLNTVLMDVYCKCGCVQLARDLFDKAQEKNLFSWNIMINGH 263

Query: 249 AQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK 308
            +    E+AL LF +M+ +G+K D +T  +LLLAC H G ++LG ++  + +    I   
Sbjct: 264 VEDSNYEEALLLFREMQTKGIKGDKVTMASLLLACTHLGALELG-KWLHAYIKKQRIDVD 322

Query: 309 PDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 338
               T +VD+  + G +  A+ +  +MP K
Sbjct: 323 VALGTALVDMYAKCGSIETAIQVFHEMPEK 352



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 84/347 (24%), Positives = 128/347 (36%), Gaps = 83/347 (23%)

Query: 2   NVK-TTVNWNSVLAGFAKQR--GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAA 58
           NVK   V   +VL   A+ R    +K   E  D+      V  N +L  +      V  A
Sbjct: 182 NVKPNEVTLVNVLTACARARDLAMVKRIHEYIDEHGFGRHVVLNTVLMDVYCKCGCVQLA 241

Query: 59  FDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVS----------- 103
            D F +   K+  SWN MI+G V+  N  +A  LF  M  K    + V+           
Sbjct: 242 RDLFDKAQEKNLFSWNIMINGHVEDSNYEEALLLFREMQTKGIKGDKVTMASLLLACTHL 301

Query: 104 -------W-----------------SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMI 139
                  W                 +A++  Y +CG ++ A+++F   P K V+ WTA+I
Sbjct: 302 GALELGKWLHAYIKKQRIDVDVALGTALVDMYAKCGSIETAIQVFHEMPEKDVMTWTALI 361

Query: 140 SGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLG-------- 191
            G    G  EN+     L+    M   G++P+A +   VL  CSH   +  G        
Sbjct: 362 LGLAMCGQAENA-----LQYFDEMHIKGVKPDAITFVGVLAACSHAGFVDEGISHFNSMS 416

Query: 192 -------------------------KQVHQLVFKSPLCKDTTALTPLISMYCKCGDL--- 223
                                     +  +L+   P+  D   L  L+      G+L   
Sbjct: 417 DTYGIQPTIEHYGGLVDILGRAGRIAEAEELIKSMPMAPDQFVLGGLLGACRIHGNLEAA 476

Query: 224 EDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMK 270
           E A K  LEI      T+  + + Y    K E+A R  + M + GM+
Sbjct: 477 ERAAKQLLEIDPYHSGTYVLLSNIYKSSKKWEEAKRTRELMAERGMR 523


>gi|356569698|ref|XP_003553033.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Glycine max]
          Length = 824

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 236/553 (42%), Positives = 335/553 (60%), Gaps = 17/553 (3%)

Query: 3   VKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFF 62
           +++ V  ++ L     + G+L+DAQ +FD +   D+VS+N +++    N DD V A  FF
Sbjct: 279 LESDVFVSNALINMYSKFGRLQDAQRVFDGMEVRDLVSWNSIIAAYEQN-DDPVTALGFF 337

Query: 63  QRL------PIKDTASWNTMISGFVQKKNMAKARDLFLAMP---EKNSVSWSAMISGYIE 113
           + +      P   T      I G +  + + +A   F+      E + V  +A+++ Y +
Sbjct: 338 KEMLFVGMRPDLLTVVSLASIFGQLSDRRIGRAVHGFVVRCRWLEVDIVIGNALVNMYAK 397

Query: 114 CGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI-GLGIRPNA 172
            G +D A  +F+  P + V++W  +I+GY      +N  A + +    MM  G  I PN 
Sbjct: 398 LGSIDCARAVFEQLPSRDVISWNTLITGY-----AQNGLASEAIDAYNMMEEGRTIVPNQ 452

Query: 173 SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLE 232
            +  S+L   SH+ +LQ G ++H  + K+ L  D    T LI MY KCG LEDA  LF E
Sbjct: 453 GTWVSILPAYSHVGALQQGMKIHGRLIKNCLFLDVFVATCLIDMYGKCGRLEDAMSLFYE 512

Query: 233 IQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 292
           I ++  V WNA+IS    HG GEKAL+LF  M+ +G+K D ITFV+LL AC+H+GLVD  
Sbjct: 513 IPQETSVPWNAIISSLGIHGHGEKALQLFKDMRADGVKADHITFVSLLSACSHSGLVDEA 572

Query: 293 IQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACR 352
              FD+M  +Y I     HY CMVDL GRAG L +A +L+  MP +   +I+GTLL+ACR
Sbjct: 573 QWCFDTMQKEYRIKPNLKHYGCMVDLFGRAGYLEKAYNLVSNMPIQADASIWGTLLAACR 632

Query: 353 VHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPG 412
           +H   +L  FA+  L  ++  N  G YV L+NIYA + KW+   ++R   ++  + K PG
Sbjct: 633 IHGNAELGTFASDRLLEVDSENV-GYYVLLSNIYANVGKWEGAVKVRSLARDRGLRKTPG 691

Query: 413 YSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQ 472
           +S + VG+VV  F +G++ HP+   I+E+L+ L  +MK  GYVPD  F L  V E+ KE+
Sbjct: 692 WSSVVVGSVVEVFYAGNQSHPQCAEIYEELRVLNAKMKSLGYVPDYSFVLQDVEEDEKEE 751

Query: 473 LLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFH 532
           +L  HSE+LAI FG+I  P  +PIR+FKNLRVCGDCH ATKYIS I +REIIVRD+ RFH
Sbjct: 752 ILTSHSERLAIVFGIISTPPKSPIRIFKNLRVCGDCHNATKYISKITEREIIVRDSNRFH 811

Query: 533 HFKDGTCSCGDYW 545
           HFKDG CSCGDYW
Sbjct: 812 HFKDGICSCGDYW 824



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 89/345 (25%), Positives = 175/345 (50%), Gaps = 30/345 (8%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK----DTASWNTM 76
           G ++ A ++F  +P  DV S+N M+S    N  +V  A     R+  +    DT + ++M
Sbjct: 196 GAVEVAHKVFVDMPVRDVGSWNAMISGFCQNG-NVAEALRVLDRMKTEEVKMDTVTVSSM 254

Query: 77  ISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSV 132
           +    Q  ++     + L +     E +    +A+I+ Y + G+L  A  +F    V+ +
Sbjct: 255 LPICAQSNDVVGGVLVHLYVIKHGLESDVFVSNALINMYSKFGRLQDAQRVFDGMEVRDL 314

Query: 133 VAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGK 192
           V+W ++I+ Y      +N      L   + M+ +G+RP+  ++ S+      LS  ++G+
Sbjct: 315 VSWNSIIAAYE-----QNDDPVTALGFFKEMLFVGMRPDLLTVVSLASIFGQLSDRRIGR 369

Query: 193 QVHQLVFKSP-LCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQH 251
            VH  V +   L  D      L++MY K G ++ A  +F ++  +DV++WN +I+GYAQ+
Sbjct: 370 AVHGFVVRCRWLEVDIVIGNALVNMYAKLGSIDCARAVFEQLPSRDVISWNTLITGYAQN 429

Query: 252 GKGEKALRLFDKMKD-EGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN-----DYGI 305
           G   +A+  ++ M++   + P+  T+V++L A +H G +  G++    ++      D  +
Sbjct: 430 GLASEAIDAYNMMEEGRTIVPNQGTWVSILPAYSHVGALQQGMKIHGRLIKNCLFLDVFV 489

Query: 306 AAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK---PQPAIFGTL 347
           A      TC++D+ G+ G+L +A+ L  ++P +   P  AI  +L
Sbjct: 490 A------TCLIDMYGKCGRLEDAMSLFYEIPQETSVPWNAIISSL 528



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 68/254 (26%), Positives = 127/254 (50%), Gaps = 19/254 (7%)

Query: 86  MAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKF 145
           + KA+D+ L          + +++ Y   G L  +   FK    K++ +W +M+S Y++ 
Sbjct: 77  LGKAQDVVLL---------TQLVTLYATLGDLSLSSTTFKHIQRKNIFSWNSMVSAYVRR 127

Query: 146 GYVENSWAEDGLKLLRMMIGL-GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLC 204
           G        D +  +  ++ L G+RP+  +   VL  C  L+    G+++H  V K    
Sbjct: 128 GRYR-----DSMDCVTELLSLSGVRPDFYTFPPVLKACLSLAD---GEKMHCWVLKMGFE 179

Query: 205 KDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKM 264
            D      LI +Y + G +E A K+F+++  +DV +WNAMISG+ Q+G   +ALR+ D+M
Sbjct: 180 HDVYVAASLIHLYSRFGAVEVAHKVFVDMPVRDVGSWNAMISGFCQNGNVAEALRVLDRM 239

Query: 265 KDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGK 324
           K E +K D++T  ++L  C  +  V  G+      V  +G+ +       ++++  + G+
Sbjct: 240 KTEEVKMDTVTVSSMLPICAQSNDVVGGV-LVHLYVIKHGLESDVFVSNALINMYSKFGR 298

Query: 325 LVEAVDLIKKMPFK 338
           L +A  +   M  +
Sbjct: 299 LQDAQRVFDGMEVR 312



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 70/255 (27%), Positives = 122/255 (47%), Gaps = 42/255 (16%)

Query: 62  FQRLPIKDTASWNTMISGFVQKK-------------NMAKARDLFLAMP----------- 97
           F+ +  K+  SWN+M+S +V++              +++  R  F   P           
Sbjct: 106 FKHIQRKNIFSWNSMVSAYVRRGRYRDSMDCVTELLSLSGVRPDFYTFPPVLKACLSLAD 165

Query: 98  -------------EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMK 144
                        E +    +++I  Y   G ++ A ++F   PV+ V +W AMISG+ +
Sbjct: 166 GEKMHCWVLKMGFEHDVYVAASLIHLYSRFGAVEVAHKVFVDMPVRDVGSWNAMISGFCQ 225

Query: 145 FGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLC 204
            G V      + L++L  M    ++ +  ++SS+L  C+  + +  G  VH  V K  L 
Sbjct: 226 NGNVA-----EALRVLDRMKTEEVKMDTVTVSSMLPICAQSNDVVGGVLVHLYVIKHGLE 280

Query: 205 KDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKM 264
            D      LI+MY K G L+DA ++F  ++ +D+V+WN++I+ Y Q+     AL  F +M
Sbjct: 281 SDVFVSNALINMYSKFGRLQDAQRVFDGMEVRDLVSWNSIIAAYEQNDDPVTALGFFKEM 340

Query: 265 KDEGMKPDSITFVAL 279
              GM+PD +T V+L
Sbjct: 341 LFVGMRPDLLTVVSL 355



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 56/99 (56%), Gaps = 1/99 (1%)

Query: 186 SSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMI 245
           +++ + KQ+H L+      +D   LT L+++Y   GDL  +   F  IQRK++ +WN+M+
Sbjct: 62  TNINVAKQLHALLLVLGKAQDVVLLTQLVTLYATLGDLSLSSTTFKHIQRKNIFSWNSMV 121

Query: 246 SGYAQHGKGEKALRLFDKMKD-EGMKPDSITFVALLLAC 283
           S Y + G+   ++    ++    G++PD  TF  +L AC
Sbjct: 122 SAYVRRGRYRDSMDCVTELLSLSGVRPDFYTFPPVLKAC 160


>gi|347954514|gb|AEP33757.1| organelle transcript processing 82, partial [Aethionema
           cordifolium]
          Length = 679

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 230/571 (40%), Positives = 334/571 (58%), Gaps = 48/571 (8%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
           ++ L     Q G ++DA ++FD     DVVSY  M++    +  ++  A   F  +PIKD
Sbjct: 116 HTSLISMYAQNGIVEDAHKVFDTSSHRDVVSYTAMITG-YASRGNMDKAQKMFDEIPIKD 174

Query: 70  TASWNTMISGFVQKKNMAKARDLFLAM------PEKNSV--------------------S 103
             SWN MISG+ +     +A +LF  M      P+++++                    S
Sbjct: 175 VVSWNAMISGYAEIGRYKEALELFNEMMKMDVKPDESTMATVLSTCTHSGNVELGRQIHS 234

Query: 104 W-------------SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVEN 150
           W             +A+I  Y +CG++++A  LF+    K V++W  +I GY    Y+ +
Sbjct: 235 WIDNHGFGSNLKLVNALIDLYSKCGEMERAHGLFEGLQYKDVISWNTLIGGY---AYINH 291

Query: 151 SWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKS--PLCKDTT 208
              ++ L + + M+ LG  PN  ++ S+L  C+HL ++ +G+ +H  + K    +  +T+
Sbjct: 292 H--KEALLVFQEMLKLGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKKLKGIITNTS 349

Query: 209 ALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEG 268
             T LI MY KCG++E A ++F  I  K + + NAMI G+A HG+ + A  L  +MK +G
Sbjct: 350 LQTSLIDMYAKCGNIEAANQVFDTILNKSLSSCNAMIFGFAMHGRADAAFDLLSRMKKDG 409

Query: 269 MKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEA 328
           ++PD ITFV LL AC+HAGL DLG + F SM  DY I  K +HY CM+DLLGR+G   EA
Sbjct: 410 IEPDDITFVGLLSACSHAGLSDLGRKIFKSMTLDYRIEPKLEHYGCMIDLLGRSGLFKEA 469

Query: 329 VDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAA 388
            +LI  M  +P   I+G+LL AC++HK L+L E  A  L  + P N  G YV L+NIYA 
Sbjct: 470 EELINSMTMEPDGVIWGSLLKACKIHKNLELGELIAQKLMKIEPKNP-GSYVLLSNIYAT 528

Query: 389 MKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKR 448
             +WDDVAR+R  + +  + K+PG S IE+ ++VHEF  GD+ HP+   I++ L+E++  
Sbjct: 529 SARWDDVARVRTLLNDKGLKKVPGCSSIEIDSMVHEFLIGDKFHPQNKEIYKMLEEIDSL 588

Query: 449 MKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDC 508
           +   G+V D    L  + EE+KE  L +HSEKLAIAFGLI    GT +R+ KNLRVC +C
Sbjct: 589 LAETGFVSDTSEVLQEMEEELKEGALSYHSEKLAIAFGLISTKPGTKLRIVKNLRVCRNC 648

Query: 509 HRATKYISAIEKREIIVRDTTRFHHFKDGTC 539
           H ATK IS I KREII RD +RFHHFKDG C
Sbjct: 649 HEATKLISKIYKREIIARDRSRFHHFKDGMC 679



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 109/457 (23%), Positives = 192/457 (42%), Gaps = 109/457 (23%)

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSW--------- 104
           A   F+ +   +  SWNTMI G     +   A +L++ M       NS ++         
Sbjct: 31  AISVFKSIQEPNQLSWNTMIRGHALSSDPISALNLYVYMISLGLSPNSYTFPFLFKSCAK 90

Query: 105 --------------------------SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAM 138
                                     +++IS Y + G ++ A ++F  +  + VV++TAM
Sbjct: 91  SKAAQEGKQIHAQILKYGLTVDLHVHTSLISMYAQNGIVEDAHKVFDTSSHRDVVSYTAM 150

Query: 139 ISGY--------------------------MKFGYVENSWAEDGLKLLRMMIGLGIRPNA 172
           I+GY                          M  GY E    ++ L+L   M+ + ++P+ 
Sbjct: 151 ITGYASRGNMDKAQKMFDEIPIKDVVSWNAMISGYAEIGRYKEALELFNEMMKMDVKPDE 210

Query: 173 SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLE 232
           S++++VL  C+H  +++LG+Q+H  +       +   +  LI +Y KCG++E A  LF  
Sbjct: 211 STMATVLSTCTHSGNVELGRQIHSWIDNHGFGSNLKLVNALIDLYSKCGEMERAHGLFEG 270

Query: 233 IQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 292
           +Q KDV++WN +I GYA     ++AL +F +M   G  P+ +T +++L AC H G +D+G
Sbjct: 271 LQYKDVISWNTLIGGYAYINHHKEALLVFQEMLKLGETPNDVTMLSILPACAHLGAIDIG 330

Query: 293 I---QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLV----------------------- 326
                Y D  +   GI       T ++D+  + G +                        
Sbjct: 331 RWIHVYIDKKLK--GIITNTSLQTSLIDMYAKCGNIEAANQVFDTILNKSLSSCNAMIFG 388

Query: 327 --------EAVDLIKKMP---FKPQPAIFGTLLSACRVHKRLDLAE--FAAMNL-FNLNP 372
                    A DL+ +M     +P    F  LLSAC      DL    F +M L + + P
Sbjct: 389 FAMHGRADAAFDLLSRMKKDGIEPDDITFVGLLSACSHAGLSDLGRKIFKSMTLDYRIEP 448

Query: 373 A-NAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVV 408
                GC + L       K+ +++    ++M+ + V+
Sbjct: 449 KLEHYGCMIDLLGRSGLFKEAEELIN-SMTMEPDGVI 484



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 37/253 (14%)

Query: 117 LDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLS 176
           L  A+ +FK     + ++W  MI G+       +S     L L   MI LG+ PN+ +  
Sbjct: 28  LPYAISVFKSIQEPNQLSWNTMIRGH-----ALSSDPISALNLYVYMISLGLSPNSYTFP 82

Query: 177 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK-------- 228
            +   C+   + Q GKQ+H  + K  L  D    T LISMY + G +EDA K        
Sbjct: 83  FLFKSCAKSKAAQEGKQIHAQILKYGLTVDLHVHTSLISMYAQNGIVEDAHKVFDTSSHR 142

Query: 229 -----------------------LFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMK 265
                                  +F EI  KDVV+WNAMISGYA+ G+ ++AL LF++M 
Sbjct: 143 DVVSYTAMITGYASRGNMDKAQKMFDEIPIKDVVSWNAMISGYAEIGRYKEALELFNEMM 202

Query: 266 DEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKL 325
              +KPD  T   +L  C H+G V+LG Q   S ++++G  +       ++DL  + G++
Sbjct: 203 KMDVKPDESTMATVLSTCTHSGNVELGRQ-IHSWIDNHGFGSNLKLVNALIDLYSKCGEM 261

Query: 326 VEAVDLIKKMPFK 338
             A  L + + +K
Sbjct: 262 ERAHGLFEGLQYK 274


>gi|15232837|ref|NP_186850.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75193830|sp|Q9S7F4.1|PP206_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At2g01510
 gi|6091739|gb|AAF03451.1|AC010797_27 hypothetical protein [Arabidopsis thaliana]
 gi|6513930|gb|AAF14834.1|AC011664_16 hypothetical protein [Arabidopsis thaliana]
 gi|332640228|gb|AEE73749.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 825

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 214/544 (39%), Positives = 326/544 (59%), Gaps = 15/544 (2%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPI-- 67
           N +L  ++K   ++ + + LFD++P+ D VSYN+++S     +D   A+  FF+ +    
Sbjct: 289 NQILDFYSKH-DRVLETRMLFDEMPELDFVSYNVVISS-YSQADQYEASLHFFREMQCMG 346

Query: 68  --KDTASWNTMISGFVQKKNMAKARDL----FLAMPEKNSVSWSAMISGYIECGQLDKAV 121
             +    + TM+S      ++   R L     LA  +      ++++  Y +C   ++A 
Sbjct: 347 FDRRNFPFATMLSIAANLSSLQMGRQLHCQALLATADSILHVGNSLVDMYAKCEMFEEAE 406

Query: 122 ELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLG 181
            +FK  P ++ V+WTA+ISGY     V+      GLKL   M G  +R + S+ ++VL  
Sbjct: 407 LIFKSLPQRTTVSWTALISGY-----VQKGLHGAGLKLFTKMRGSNLRADQSTFATVLKA 461

Query: 182 CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTW 241
            +  +SL LGKQ+H  + +S   ++  + + L+ MY KCG ++DA ++F E+  ++ V+W
Sbjct: 462 SASFASLLLGKQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIKDAVQVFEEMPDRNAVSW 521

Query: 242 NAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN 301
           NA+IS +A +G GE A+  F KM + G++PDS++ + +L AC+H G V+ G +YF +M  
Sbjct: 522 NALISAHADNGDGEAAIGAFAKMIESGLQPDSVSILGVLTACSHCGFVEQGTEYFQAMSP 581

Query: 302 DYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAE 361
            YGI  K  HY CM+DLLGR G+  EA  L+ +MPF+P   ++ ++L+ACR+HK   LAE
Sbjct: 582 IYGITPKKKHYACMLDLLGRNGRFAEAEKLMDEMPFEPDEIMWSSVLNACRIHKNQSLAE 641

Query: 362 FAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTV 421
            AA  LF++     A  YV ++NIYAA  +W+ V  ++ +M+E  + K+P YSW+EV   
Sbjct: 642 RAAEKLFSMEKLRDAAAYVSMSNIYAAAGEWEKVRDVKKAMRERGIKKVPAYSWVEVNHK 701

Query: 422 VHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKL 481
           +H F S D+ HP    I  K+ EL   ++  GY PD    +  V E++K + L +HSE+L
Sbjct: 702 IHVFSSNDQTHPNGDEIVRKINELTAEIEREGYKPDTSSVVQDVDEQMKIESLKYHSERL 761

Query: 482 AIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSC 541
           A+AF LI  P G PI V KNLR C DCH A K IS I KREI VRDT+RFHHF +G CSC
Sbjct: 762 AVAFALISTPEGCPIVVMKNLRACRDCHAAIKLISKIVKREITVRDTSRFHHFSEGVCSC 821

Query: 542 GDYW 545
           GDYW
Sbjct: 822 GDYW 825



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 82/275 (29%), Positives = 135/275 (49%), Gaps = 16/275 (5%)

Query: 69  DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAP 128
           DT   N ++   +++  ++ AR ++  MP KN+VS + MISG+++ G +  A +LF   P
Sbjct: 47  DTCRSNFIVEDLLRRGQVSAARKVYDEMPHKNTVSTNTMISGHVKTGDVSSARDLFDAMP 106

Query: 129 VKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLG--IRPNASSLSSVLLGCSHLS 186
            ++VV WT ++  Y +     NS  ++  KL R M        P+  + +++L GC+   
Sbjct: 107 DRTVVTWTILMGWYAR-----NSHFDEAFKLFRQMCRSSSCTLPDHVTFTTLLPGCNDAV 161

Query: 187 SLQLGKQVHQLVFKSPLCKDT----TALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWN 242
                 QVH    K  L  DT    T    L+  YC+   L+ AC LF EI  KD VT+N
Sbjct: 162 PQNAVGQVHAFAVK--LGFDTNPFLTVSNVLLKSYCEVRRLDLACVLFEEIPEKDSVTFN 219

Query: 243 AMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGI-QYFDSMVN 301
            +I+GY + G   +++ LF KM+  G +P   TF  +L A    GL D  + Q   ++  
Sbjct: 220 TLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLKAV--VGLHDFALGQQLHALSV 277

Query: 302 DYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 336
             G +        ++D   +  +++E   L  +MP
Sbjct: 278 TTGFSRDASVGNQILDFYSKHDRVLETRMLFDEMP 312



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 75/319 (23%), Positives = 136/319 (42%), Gaps = 49/319 (15%)

Query: 19  QRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMIS 78
           +RG++  A++++D++P  + VS N M+S   + + DV +A D F  +P +   +W  ++ 
Sbjct: 60  RRGQVSAARKVYDEMPHKNTVSTNTMISG-HVKTGDVSSARDLFDAMPDRTVVTWTILMG 118

Query: 79  GFVQKKNMAKARDLFLAMPEKNS------VSWSAMISG---------------------- 110
            + +  +  +A  LF  M   +S      V+++ ++ G                      
Sbjct: 119 WYARNSHFDEAFKLFRQMCRSSSCTLPDHVTFTTLLPGCNDAVPQNAVGQVHAFAVKLGF 178

Query: 111 ---------------YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAED 155
                          Y E  +LD A  LF+  P K  V +  +I+GY K G    S    
Sbjct: 179 DTNPFLTVSNVLLKSYCEVRRLDLACVLFEEIPEKDSVTFNTLITGYEKDGLYTES---- 234

Query: 156 GLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLIS 215
            + L   M   G +P+  + S VL     L    LG+Q+H L   +   +D +    ++ 
Sbjct: 235 -IHLFLKMRQSGHQPSDFTFSGVLKAVVGLHDFALGQQLHALSVTTGFSRDASVGNQILD 293

Query: 216 MYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSIT 275
            Y K   + +   LF E+   D V++N +IS Y+Q  + E +L  F +M+  G    +  
Sbjct: 294 FYSKHDRVLETRMLFDEMPELDFVSYNVVISSYSQADQYEASLHFFREMQCMGFDRRNFP 353

Query: 276 FVALLLACNHAGLVDLGIQ 294
           F  +L    +   + +G Q
Sbjct: 354 FATMLSIAANLSSLQMGRQ 372



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 77/335 (22%), Positives = 145/335 (43%), Gaps = 70/335 (20%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQ 63
           +TTV+W ++++G+  Q+G      +LF K+   ++ +     + +L              
Sbjct: 415 RTTVSWTALISGYV-QKGLHGAGLKLFTKMRGSNLRADQSTFATVL-------------- 459

Query: 64  RLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVEL 123
               K +AS+ +++ G      + ++ +L      +N  S S ++  Y +CG +  AV++
Sbjct: 460 ----KASASFASLLLGKQLHAFIIRSGNL------ENVFSGSGLVDMYAKCGSIKDAVQV 509

Query: 124 FKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCS 183
           F+  P ++ V+W A+IS      + +N   E  +     MI  G++P++ S+  VL  CS
Sbjct: 510 FEEMPDRNAVSWNALIS-----AHADNGDGEAAIGAFAKMIESGLQPDSVSILGVLTACS 564

Query: 184 HLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNA 243
           H   ++ G +  Q +  SP+      +TP    Y        AC                
Sbjct: 565 HCGFVEQGTEYFQAM--SPI----YGITPKKKHY--------AC---------------- 594

Query: 244 MISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN---HAGLVDLGIQYFDSMV 300
           M+    ++G+  +A +L D+M  E   PD I + ++L AC    +  L +   +   SM 
Sbjct: 595 MLDLLGRNGRFAEAEKLMDEMPFE---PDEIMWSSVLNACRIHKNQSLAERAAEKLFSME 651

Query: 301 NDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335
                AA    Y  M ++   AG+  +  D+ K M
Sbjct: 652 KLRDAAA----YVSMSNIYAAAGEWEKVRDVKKAM 682



 Score = 46.2 bits (108), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 82/347 (23%), Positives = 134/347 (38%), Gaps = 51/347 (14%)

Query: 192 KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQH 251
           ++V   + K+    DT     ++    + G +  A K++ E+  K+ V+ N MISG+ + 
Sbjct: 33  RRVDARIIKTGFDTDTCRSNFIVEDLLRRGQVSAARKVYDEMPHKNTVSTNTMISGHVKT 92

Query: 252 GKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDH 311
           G    A  LFD M D  +    +T+  L+         D   + F  M         PDH
Sbjct: 93  GDVSSARDLFDAMPDRTV----VTWTILMGWYARNSHFDEAFKLFRQMCRSSSCTL-PDH 147

Query: 312 YTCMVDLLGRAGKLVE-AVDLIK----KMPFKPQP--AIFGTLL-SACRVHKRLDLAEFA 363
            T    L G    + + AV  +     K+ F   P   +   LL S C V +RLDL    
Sbjct: 148 VTFTTLLPGCNDAVPQNAVGQVHAFAVKLGFDTNPFLTVSNVLLKSYCEV-RRLDL---- 202

Query: 364 AMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPG---YSWIEVGT 420
           A  LF   P   +  +  L   Y     + +   + L M+++     P    +S +    
Sbjct: 203 ACVLFEEIPEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSG--HQPSDFTFSGVLKAV 260

Query: 421 V-VHEFRSGDRVHP------------------ELVSIHEKLKELEKRMKLAGYVPDLEFA 461
           V +H+F  G ++H                   +  S H+++  LE RM L   +P+L+F 
Sbjct: 261 VGLHDFALGQQLHALSVTTGFSRDASVGNQILDFYSKHDRV--LETRM-LFDEMPELDFV 317

Query: 462 LHAV------GEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNL 502
            + V        +  E  L F  E   + F     P  T + +  NL
Sbjct: 318 SYNVVISSYSQADQYEASLHFFREMQCMGFDRRNFPFATMLSIAANL 364


>gi|449470293|ref|XP_004152852.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 222/534 (41%), Positives = 325/534 (60%), Gaps = 17/534 (3%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMIS-- 78
           GK    + LFD+I QPD++SYN M+S    N +   A   F + L      + +T++   
Sbjct: 263 GKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASGQRVNSSTLVGLI 322

Query: 79  ------GFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSV 132
                   +Q   + +   L + +  + SVS +A+ + Y    ++  A +LF  +P KS+
Sbjct: 323 PVYLPFNHLQLSRLIQNLSLKIGIILQPSVS-TALTTVYCRLNEVQFARQLFDESPEKSL 381

Query: 133 VAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGK 192
            +W AMISGY      +N   +  + L + M+   + PN  +++S+L  C+ L +L +GK
Sbjct: 382 ASWNAMISGY-----TQNGLTDRAISLFQEMMP-QLSPNPVTVTSILSACAQLGALSIGK 435

Query: 193 QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHG 252
            VH L+    L  +    T L+ MY KCG + +A +LF  +  K+VVTWNAMI+GY  HG
Sbjct: 436 WVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLMVDKNVVTWNAMITGYGLHG 495

Query: 253 KGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY 312
            G++AL+LF +M   G+ P  +TF+++L AC+H+GLV  G + F SM N+YG     +HY
Sbjct: 496 HGKEALKLFYEMLQSGIPPTGVTFLSILYACSHSGLVSEGNEIFHSMANNYGFQPMSEHY 555

Query: 313 TCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNP 372
            CMVD+LGRAG+L  A++ I++MP +P PA++G LL AC +HK  ++A  A+  LF L+P
Sbjct: 556 ACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGACMIHKNTEMANVASKRLFQLDP 615

Query: 373 ANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVH 432
            N  G YV L+NIY+  + +   A +R  +K+  + K PG + IE+    + F SGDR H
Sbjct: 616 EN-VGYYVLLSNIYSTDRNFPKAASVRQVVKKRKLAKTPGCTLIEIDDQQYVFTSGDRSH 674

Query: 433 PELVSIHEKLKELEKRMKLAGYVPD-LEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVP 491
           P+  +I E L++L  +M+ AGY  + +  ALH V +E KE ++  HSEKLAIAFGLI   
Sbjct: 675 PQATAIFEMLEKLTGKMREAGYQAETVTTALHDVEDEEKELMVNVHSEKLAIAFGLISTK 734

Query: 492 LGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
            GT IR+ KNLRVC DCH ATK+IS I +R I+VRD  RFHHFK+G CSCGDYW
Sbjct: 735 PGTEIRIIKNLRVCLDCHTATKFISKITERVIVVRDANRFHHFKNGICSCGDYW 788



 Score =  118 bits (295), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 88/327 (26%), Positives = 159/327 (48%), Gaps = 16/327 (4%)

Query: 16  FAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNS--DDVVAAF-DFFQRLPIKDTAS 72
           F   R +L  A+++FD +P+ D V +N M+S    NS  +D +  F D        D+ +
Sbjct: 159 FKFTRAEL--ARKVFDVMPERDTVLWNTMISGFSRNSYFEDSIRVFVDMLDVGLSFDSTT 216

Query: 73  WNTMISGFVQKKNMAKARDLFLAMPEKNSVS----WSAMISGYIECGQLDKAVELFKVAP 128
             T+++   + +       +     +K   S     + +IS Y +CG+  K   LF    
Sbjct: 217 LATVLTAVAELQEYRLGMGIQCLASKKGLHSDVYVLTGLISLYSKCGKSCKGRILFDQID 276

Query: 129 VKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSL 188
              ++++ AMIS     GY  N   E  + L R ++  G R N+S+L  ++      + L
Sbjct: 277 QPDLISYNAMIS-----GYTFNHETESAVTLFRELLASGQRVNSSTLVGLIPVYLPFNHL 331

Query: 189 QLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGY 248
           QL + +  L  K  +    +  T L ++YC+  +++ A +LF E   K + +WNAMISGY
Sbjct: 332 QLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQFARQLFDESPEKSLASWNAMISGY 391

Query: 249 AQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK 308
            Q+G  ++A+ LF +M  + + P+ +T  ++L AC   G + +G ++   ++    + + 
Sbjct: 392 TQNGLTDRAISLFQEMMPQ-LSPNPVTVTSILSACAQLGALSIG-KWVHGLIKSERLESN 449

Query: 309 PDHYTCMVDLLGRAGKLVEAVDLIKKM 335
               T +VD+  + G +VEA  L   M
Sbjct: 450 VYVSTALVDMYAKCGSIVEARQLFDLM 476



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 91/336 (27%), Positives = 163/336 (48%), Gaps = 34/336 (10%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK-------DTASW 73
           G +   ++LF+K+ +PD+  +N+++      SD+ +     F    ++       D  ++
Sbjct: 60  GAVAHVRQLFNKVSKPDLFLFNVLIRGF---SDNGLPKSSIFLYTHLRKKTNLRPDNFTY 116

Query: 74  NTMISGFVQKKN-----MAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAP 128
              IS   + ++     +  A  +   +   N    SA++  Y +  + + A ++F V P
Sbjct: 117 AFAISAASRLEDERVGVLLHAHSIVDGVA-SNLFVGSAIVDLYFKFTRAELARKVFDVMP 175

Query: 129 VKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSL 188
            +  V W  MISG+ +     NS+ ED +++   M+ +G+  ++++L++VL   + L   
Sbjct: 176 ERDTVLWNTMISGFSR-----NSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEY 230

Query: 189 QLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK---LFLEIQRKDVVTWNAMI 245
           +LG  +  L  K  L  D   LT LIS+Y KCG    +CK   LF +I + D++++NAMI
Sbjct: 231 RLGMGIQCLASKKGLHSDVYVLTGLISLYSKCG---KSCKGRILFDQIDQPDLISYNAMI 287

Query: 246 SGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL---LACNHAGLVDLGIQYFDSMVND 302
           SGY  + + E A+ LF ++   G + +S T V L+   L  NH  L  L IQ     +  
Sbjct: 288 SGYTFNHETESAVTLFRELLASGQRVNSSTLVGLIPVYLPFNHLQLSRL-IQNLSLKI-- 344

Query: 303 YGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 338
            GI  +P   T +  +  R  ++  A  L  + P K
Sbjct: 345 -GIILQPSVSTALTTVYCRLNEVQFARQLFDESPEK 379



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/222 (20%), Positives = 93/222 (41%), Gaps = 5/222 (2%)

Query: 103 SWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRM 162
           S + +   + + G +    +LF       +  +  +I G+   G  ++S          +
Sbjct: 48  SITKLTHKFFDLGAVAHVRQLFNKVSKPDLFLFNVLIRGFSDNGLPKSSI----FLYTHL 103

Query: 163 MIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGD 222
                +RP+  + +  +   S L   ++G  +H       +  +    + ++ +Y K   
Sbjct: 104 RKKTNLRPDNFTYAFAISAASRLEDERVGVLLHAHSIVDGVASNLFVGSAIVDLYFKFTR 163

Query: 223 LEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA 282
            E A K+F  +  +D V WN MISG++++   E ++R+F  M D G+  DS T   +L A
Sbjct: 164 AELARKVFDVMPERDTVLWNTMISGFSRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTA 223

Query: 283 CNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGK 324
                   LG+     + +  G+ +     T ++ L  + GK
Sbjct: 224 VAELQEYRLGMG-IQCLASKKGLHSDVYVLTGLISLYSKCGK 264


>gi|449507535|ref|XP_004163058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 222/534 (41%), Positives = 325/534 (60%), Gaps = 17/534 (3%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMIS-- 78
           GK    + LFD+I QPD++SYN M+S    N +   A   F + L      + +T++   
Sbjct: 263 GKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASGQRVNSSTLVGLI 322

Query: 79  ------GFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSV 132
                   +Q   + +   L + +  + SVS +A+ + Y    ++  A +LF  +P KS+
Sbjct: 323 PVYLPFNHLQLSRLIQNLSLKIGIILQPSVS-TALTTVYCRLNEVQFARQLFDESPEKSL 381

Query: 133 VAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGK 192
            +W AMISGY      +N   +  + L + M+   + PN  +++S+L  C+ L +L +GK
Sbjct: 382 ASWNAMISGY-----TQNGLTDRAISLFQEMMP-QLSPNPVTVTSILSACAQLGALSIGK 435

Query: 193 QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHG 252
            VH L+    L  +    T L+ MY KCG + +A +LF  +  K+VVTWNAMI+GY  HG
Sbjct: 436 WVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLMVDKNVVTWNAMITGYGLHG 495

Query: 253 KGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY 312
            G++AL+LF +M   G+ P  +TF+++L AC+H+GLV  G + F SM N+YG     +HY
Sbjct: 496 HGKEALKLFYEMLQSGIPPTGVTFLSILYACSHSGLVSEGNEIFHSMANNYGFQPMSEHY 555

Query: 313 TCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNP 372
            CMVD+LGRAG+L  A++ I++MP +P PA++G LL AC +HK  ++A  A+  LF L+P
Sbjct: 556 ACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGACMIHKNTEMANVASKRLFQLDP 615

Query: 373 ANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVH 432
            N  G YV L+NIY+  + +   A +R  +K+  + K PG + IE+    + F SGDR H
Sbjct: 616 EN-VGYYVLLSNIYSTDRNFPKAASVRQVVKKRKLAKTPGCTLIEIDDQQYVFTSGDRSH 674

Query: 433 PELVSIHEKLKELEKRMKLAGYVPD-LEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVP 491
           P+  +I E L++L  +M+ AGY  + +  ALH V +E KE ++  HSEKLAIAFGLI   
Sbjct: 675 PQATAIFEMLEKLTGKMREAGYQAETVTTALHDVEDEEKELMVNVHSEKLAIAFGLISTK 734

Query: 492 LGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
            GT IR+ KNLRVC DCH ATK+IS I +R I+VRD  RFHHFK+G CSCGDYW
Sbjct: 735 PGTEIRIIKNLRVCLDCHTATKFISKITERVIVVRDANRFHHFKNGICSCGDYW 788



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 88/327 (26%), Positives = 159/327 (48%), Gaps = 16/327 (4%)

Query: 16  FAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNS--DDVVAAF-DFFQRLPIKDTAS 72
           F   R +L  A+++FD +P+ D V +N M+S    NS  +D +  F D        D+ +
Sbjct: 159 FKFTRAEL--ARKVFDVMPERDTVLWNTMISGFSRNSYFEDSIRVFVDMLDVGLSFDSTT 216

Query: 73  WNTMISGFVQKKNMAKARDLFLAMPEKNSVS----WSAMISGYIECGQLDKAVELFKVAP 128
             T+++   + +       +     +K   S     + +IS Y +CG+  K   LF    
Sbjct: 217 LATVLTAVAELQEYRLGMGIQCLASKKGLHSDVYVLTGLISLYSKCGKSCKGRILFDQID 276

Query: 129 VKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSL 188
              ++++ AMIS     GY  N   E  + L R ++  G R N+S+L  ++      + L
Sbjct: 277 QPDLISYNAMIS-----GYTFNHETESAVTLFRELLASGQRVNSSTLVGLIPVYLPFNHL 331

Query: 189 QLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGY 248
           QL + +  L  K  +    +  T L ++YC+  +++ A +LF E   K + +WNAMISGY
Sbjct: 332 QLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQFARQLFDESPEKSLASWNAMISGY 391

Query: 249 AQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK 308
            Q+G  ++A+ LF +M  + + P+ +T  ++L AC   G + +G ++   ++    + + 
Sbjct: 392 TQNGLTDRAISLFQEMMPQ-LSPNPVTVTSILSACAQLGALSIG-KWVHGLIKSERLESN 449

Query: 309 PDHYTCMVDLLGRAGKLVEAVDLIKKM 335
               T +VD+  + G +VEA  L   M
Sbjct: 450 VYVSTALVDMYAKCGSIVEARQLFDLM 476



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 91/336 (27%), Positives = 163/336 (48%), Gaps = 34/336 (10%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK-------DTASW 73
           G +   ++LF+K+ +PD+  +N+++      SD+ +     F    ++       D  ++
Sbjct: 60  GAVAHVRQLFNKVSKPDLFLFNVLIRGF---SDNGLPKSSIFLYTHLRKXTNLRPDNFTY 116

Query: 74  NTMISGFVQKKN-----MAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAP 128
              IS   + ++     +  A  +   +   N    SA++  Y +  + + A ++F V P
Sbjct: 117 AFAISAASRLEDERVGVLLHAHSIVDGVA-SNLFVGSAIVDLYFKFTRAELARKVFDVMP 175

Query: 129 VKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSL 188
            +  V W  MISG+ +     NS+ ED +++   M+ +G+  ++++L++VL   + L   
Sbjct: 176 ERDTVLWNTMISGFSR-----NSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEY 230

Query: 189 QLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK---LFLEIQRKDVVTWNAMI 245
           +LG  +  L  K  L  D   LT LIS+Y KCG    +CK   LF +I + D++++NAMI
Sbjct: 231 RLGMGIQCLASKKGLHSDVYVLTGLISLYSKCG---KSCKGRILFDQIDQPDLISYNAMI 287

Query: 246 SGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL---LACNHAGLVDLGIQYFDSMVND 302
           SGY  + + E A+ LF ++   G + +S T V L+   L  NH  L  L IQ     +  
Sbjct: 288 SGYTFNHETESAVTLFRELLASGQRVNSSTLVGLIPVYLPFNHLQLSRL-IQNLSLKI-- 344

Query: 303 YGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 338
            GI  +P   T +  +  R  ++  A  L  + P K
Sbjct: 345 -GIILQPSVSTALTTVYCRLNEVQFARQLFDESPEK 379



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/222 (20%), Positives = 93/222 (41%), Gaps = 5/222 (2%)

Query: 103 SWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRM 162
           S + +   + + G +    +LF       +  +  +I G+   G  ++S          +
Sbjct: 48  SITKLTHKFFDLGAVAHVRQLFNKVSKPDLFLFNVLIRGFSDNGLPKSSI----FLYTHL 103

Query: 163 MIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGD 222
                +RP+  + +  +   S L   ++G  +H       +  +    + ++ +Y K   
Sbjct: 104 RKXTNLRPDNFTYAFAISAASRLEDERVGVLLHAHSIVDGVASNLFVGSAIVDLYFKFTR 163

Query: 223 LEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA 282
            E A K+F  +  +D V WN MISG++++   E ++R+F  M D G+  DS T   +L A
Sbjct: 164 AELARKVFDVMPERDTVLWNTMISGFSRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTA 223

Query: 283 CNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGK 324
                   LG+     + +  G+ +     T ++ L  + GK
Sbjct: 224 VAELQEYRLGMG-IQCLASKKGLHSDVYVLTGLISLYSKCGK 264


>gi|302770521|ref|XP_002968679.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
 gi|300163184|gb|EFJ29795.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
          Length = 818

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 221/570 (38%), Positives = 333/570 (58%), Gaps = 52/570 (9%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK------------ 68
           G   +A+E+FDK+ + D+VS+N+M+ C +LN D    A + +Q+L ++            
Sbjct: 256 GSSHEAREVFDKMKKRDMVSWNVMIGCYVLNGD-FHEALELYQKLDMEGFKRTKATFVSI 314

Query: 69  ---------------------------DTASWNTMISGFVQKKNMAKARDLFLAMPEKNS 101
                                      + A    +++ + +  ++ +AR +F AM  +++
Sbjct: 315 LGACSSVKALAQGRLVHSHILERGLDSEVAVATALVNMYAKCGSLEEARKVFNAMKNRDA 374

Query: 102 VSWSAMISGYIECG---QLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLK 158
           V+WS +I  Y   G      KA ++F     +  ++W AMI+ Y     V+N  A   +K
Sbjct: 375 VAWSTLIGAYASNGYGKDARKARKVFDRLGSRDTISWNAMITTY-----VQNGCAVAAMK 429

Query: 159 LLRMMIGL-GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMY 217
           + R M G  G++P+A +  +VL  C+ L  L   K +H  + +S L  +      LI+MY
Sbjct: 430 IFREMTGAAGLKPDAVTFIAVLEACASLGRLSEVKALHAQISESELESNVVVTNTLINMY 489

Query: 218 CKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFV 277
            +CG LE+A +LF   + K VV+W AM++ ++Q+G+  +AL LF +M  EG+KPD +T+ 
Sbjct: 490 ARCGSLEEAERLFAAAKEKTVVSWTAMVAAFSQYGRYAEALDLFQEMDLEGVKPDDVTYT 549

Query: 278 ALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPF 337
           ++L  C H G ++ G +YF  M   + +A   DH+  MVDLLGR+G+L +A +L++ MPF
Sbjct: 550 SILFVCTHGGSLEQGWRYFTDMAELHALAPTADHFAAMVDLLGRSGRLFDAKELLESMPF 609

Query: 338 KPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVAR 397
           +P P  + T L+ACR+H +L+L E AA  ++ L+P++ A  Y+ ++NIYAA   W+ VA 
Sbjct: 610 EPDPVAWMTFLTACRIHGKLELGEAAAERVYELDPSSTAP-YIAMSNIYAAHGMWEKVAS 668

Query: 398 IRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPD 457
           +R  M+E  + K+PG S+IEV   +HEF SG + HP    I E+L  L   M+ AGYVPD
Sbjct: 669 VRKKMEERGLKKLPGLSFIEVDGKLHEFSSGGKYHPRTDEICEELTRLHGLMRAAGYVPD 728

Query: 458 LEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKV-PLGTPIRVFKNLRVCGDCHRATKYIS 516
            +  LH V E  KE +LL+HSEK+AIAFGL+     G PIRV KNLRVC DCH ATK+I+
Sbjct: 729 TKAVLHDVSEGEKETMLLYHSEKMAIAFGLVSSRGSGEPIRVVKNLRVCSDCHTATKFIA 788

Query: 517 AIEKREIIVRDTTRFHHF-KDGTCSCGDYW 545
            I  R+IIVRD  RFH F  DG CSCGDYW
Sbjct: 789 RIAGRDIIVRDCNRFHRFSSDGKCSCGDYW 818



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 98/384 (25%), Positives = 175/384 (45%), Gaps = 72/384 (18%)

Query: 35  QPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPI----KDTASWNTMISGFVQKKNMAKAR 90
           QPD V++  +L C   +  DVV      +R+      +DT   N +IS + +  ++  AR
Sbjct: 4   QPDNVTFLTVL-CSCSSCGDVVEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDAR 62

Query: 91  DLFLAMP--EKNSVSWSAMISGYIECGQLDKAVELF-----------KVAPVKSVVAWTA 137
            +F +M   ++N VSW+AMI+ Y + G   +A+ L+            V  V  + A ++
Sbjct: 63  SVFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACSS 122

Query: 138 MISG-------------------------YMKFGYV--------------ENSW------ 152
           +  G                         Y +FG V              E SW      
Sbjct: 123 LAQGREIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVILA 182

Query: 153 -AEDG-----LKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKD 206
            ++ G     L++ + M    ++PN+++  +V+ G S    L  G+++H  +  +    D
Sbjct: 183 HSQSGDWSGALRIFKEM-KCDVKPNSTTYINVISGFSTPEVLPEGRKIHAEIVANGFDTD 241

Query: 207 TTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKD 266
               T LI+MY KCG   +A ++F +++++D+V+WN MI  Y  +G   +AL L+ K+  
Sbjct: 242 LVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVLNGDFHEALELYQKLDM 301

Query: 267 EGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLV 326
           EG K    TFV++L AC+    +  G +   S + + G+ ++    T +V++  + G L 
Sbjct: 302 EGFKRTKATFVSILGACSSVKALAQG-RLVHSHILERGLDSEVAVATALVNMYAKCGSLE 360

Query: 327 EAVDLIKKMPFKPQPAIFGTLLSA 350
           EA  +   M  +   A + TL+ A
Sbjct: 361 EARKVFNAMKNRDAVA-WSTLIGA 383


>gi|357111956|ref|XP_003557776.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Brachypodium distachyon]
          Length = 747

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 226/555 (40%), Positives = 327/555 (58%), Gaps = 47/555 (8%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIP----QPDVVSYNIMLSCILLNSDDVV 56
           M  +  V WNS+++G  +QRG+   A ++F  +      PDV++   + S I    D   
Sbjct: 230 MECRDLVTWNSIISG-CEQRGQTAAALKMFQGMRGSGVSPDVLTLVSLASAIAQGGDGRS 288

Query: 57  A----AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYI 112
           A     +   +   + D  + N ++  + +  N+  A+ +F +MP ++SVSW+ +I+GY+
Sbjct: 289 AKSLHCYVMRRGWDVDDIIAGNAIVDMYAKLSNIEAAQRMFDSMPVQDSVSWNTLITGYM 348

Query: 113 ECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNA 172
           + G  ++AVE                     ++G+++     +GLK ++           
Sbjct: 349 QNGLANEAVE---------------------RYGHMQK---HEGLKAIQ----------- 373

Query: 173 SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLE 232
            +  SVL   SHL +LQ G ++H L  K  L  D    T LI +Y KCG L +A  LF +
Sbjct: 374 GTFVSVLPAYSHLGALQQGMRMHALSIKIGLNVDVYVGTCLIDLYAKCGKLAEAMLLFEK 433

Query: 233 IQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 292
           + R+    WNA+ISG   HG G +AL LF +M+ EG+KPD +TFV+LL AC+HAGLVD G
Sbjct: 434 MPRRSTGPWNAIISGLGVHGHGAEALTLFSRMQQEGIKPDHVTFVSLLAACSHAGLVDQG 493

Query: 293 IQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACR 352
             +FD M   Y I     HY CM D+LGRAG+L EA + I+ MP KP  A++G LL ACR
Sbjct: 494 RSFFDVMQVTYDIVPIAKHYACMADMLGRAGQLDEAFNFIQNMPIKPDSAVWGALLGACR 553

Query: 353 VHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPG 412
           +H  +++ + A+ NLF L+P N  G YV ++N+YA + KWD V  +R  ++  N+ K PG
Sbjct: 554 IHGNVEMGKVASQNLFELDPEN-VGYYVLMSNMYAKVGKWDGVDEVRSLVRRQNLQKTPG 612

Query: 413 YSWIEVGTVVHEFRSGDRV--HPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVK 470
           +S IEV   V+ F SG++   HP+   I  +L+ L  +++  GYV D  F L  V ++ K
Sbjct: 613 WSSIEVKRSVNVFYSGNQTEPHPQHEEIQAELRSLLAKIRSVGYVSDYSFVLQDVEDDEK 672

Query: 471 EQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTR 530
           E +L  HSE+LAIAFG+I  P  TP+ ++KNLRVCGDCH ATKYIS I +REIIVRD+ R
Sbjct: 673 EHILNNHSERLAIAFGIINTPSRTPLHIYKNLRVCGDCHNATKYISQITEREIIVRDSNR 732

Query: 531 FHHFKDGTCSCGDYW 545
           FHHFKDG CSCGD+W
Sbjct: 733 FHHFKDGHCSCGDFW 747



 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 94/346 (27%), Positives = 167/346 (48%), Gaps = 22/346 (6%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G++ +A ++FD++ + DV ++N MLS +  N+     A   F R+  +  A     +S  
Sbjct: 117 GRISEAYKVFDEMSERDVPAWNAMLSGLCRNA-RAAEAVGLFGRMVGEGVAGDTVTVSSV 175

Query: 81  VQKKNMAKARDLFLAMP--------EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSV 132
           +    +   + L L M         +K     +A+I  Y + G L++A  +F     + +
Sbjct: 176 LPMCVLLGDQVLALVMHVYAVKHGLDKELFVCNALIDVYGKLGMLEEAQCVFHGMECRDL 235

Query: 133 VAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGK 192
           V W ++ISG  + G    +     LK+ + M G G+ P+  +L S+    +     +  K
Sbjct: 236 VTWNSIISGCEQRGQTAAA-----LKMFQGMRGSGVSPDVLTLVSLASAIAQGGDGRSAK 290

Query: 193 QVHQLVFKSPL-CKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQH 251
            +H  V +      D  A   ++ MY K  ++E A ++F  +  +D V+WN +I+GY Q+
Sbjct: 291 SLHCYVMRRGWDVDDIIAGNAIVDMYAKLSNIEAAQRMFDSMPVQDSVSWNTLITGYMQN 350

Query: 252 GKGEKALRLFDKM-KDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPD 310
           G   +A+  +  M K EG+K    TFV++L A +H G +  G++     +    I    D
Sbjct: 351 GLANEAVERYGHMQKHEGLKAIQGTFVSVLPAYSHLGALQQGMRMHALSIK---IGLNVD 407

Query: 311 HY--TCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVH 354
            Y  TC++DL  + GKL EA+ L +KMP +     +  ++S   VH
Sbjct: 408 VYVGTCLIDLYAKCGKLAEAMLLFEKMP-RRSTGPWNAIISGLGVH 452



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 61/196 (31%), Positives = 102/196 (52%), Gaps = 5/196 (2%)

Query: 92  LFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENS 151
           L L +   +  +  +++  Y+  G++ +A ++F     + V AW AM+SG  +     N+
Sbjct: 94  LRLGLVRPSVFTSGSLVHAYLRFGRISEAYKVFDEMSERDVPAWNAMLSGLCR-----NA 148

Query: 152 WAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALT 211
            A + + L   M+G G+  +  ++SSVL  C  L    L   +H    K  L K+     
Sbjct: 149 RAAEAVGLFGRMVGEGVAGDTVTVSSVLPMCVLLGDQVLALVMHVYAVKHGLDKELFVCN 208

Query: 212 PLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKP 271
            LI +Y K G LE+A  +F  ++ +D+VTWN++ISG  Q G+   AL++F  M+  G+ P
Sbjct: 209 ALIDVYGKLGMLEEAQCVFHGMECRDLVTWNSIISGCEQRGQTAAALKMFQGMRGSGVSP 268

Query: 272 DSITFVALLLACNHAG 287
           D +T V+L  A    G
Sbjct: 269 DVLTLVSLASAIAQGG 284


>gi|357453021|ref|XP_003596787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355485835|gb|AES67038.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 867

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 230/622 (36%), Positives = 344/622 (55%), Gaps = 86/622 (13%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIP----QPDVVSY-NIMLSCILLNS--- 52
           M ++  V WNS++AG+ +  G+  +  E+F+K+     +P  +++ +++ SC  L     
Sbjct: 255 MEIRDWVTWNSMIAGYVRN-GQDLEVFEIFNKMQLAGVKPTHMTFASVIKSCASLRELAL 313

Query: 53  ---------------------------------DDVVAAFDFFQRLPIKDTASWNTMISG 79
                                            DD ++ F   +    K+  SW  MISG
Sbjct: 314 VKLMQCKALKSGFTTDQIVITALMVALSKCKEMDDALSLFSLMEEG--KNVVSWTAMISG 371

Query: 80  FVQKKNMAKARDLFLAMP-----------------------------------EKNSVSW 104
            +Q     +A +LF  M                                    E++S   
Sbjct: 372 CLQNGGNDQAVNLFSQMRREGVKPNHFTYSAILTVHYPVFVSEMHAEVIKTNYERSSSVG 431

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI 164
           +A++  Y++ G    AV++F++   K ++AW+AM++GY + G  E     +  KL   +I
Sbjct: 432 TALLDAYVKLGNTIDAVKVFEIIEAKDLMAWSAMLAGYAQTGETE-----EAAKLFHQLI 486

Query: 165 GLGIRPNASSLSSVLLGC-SHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDL 223
             GI+PN  + SSV+  C S  ++ + GKQ H    K  L       + L++MY K G++
Sbjct: 487 KEGIKPNEFTFSSVINACASPTAAAEQGKQFHAYAIKMRLNNALCVSSALVTMYAKRGNI 546

Query: 224 EDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC 283
           + A ++F   + +D+V+WN+MISGY+QHG+ +KAL +FD+M+   M  D++TF+ ++ AC
Sbjct: 547 DSAHEVFKRQKERDLVSWNSMISGYSQHGQAKKALEVFDEMQKRNMDVDAVTFIGVITAC 606

Query: 284 NHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAI 343
            HAGLV+ G +YF+SM+ND+ I     HY+CM+DL  RAG L +A+ +I +MPF P   +
Sbjct: 607 THAGLVEKGQKYFNSMINDHHINPTMKHYSCMIDLYSRAGMLEKAMGIINEMPFPPGATV 666

Query: 344 FGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMK 403
           + TLL A RVH+ ++L E AA  L +L P ++A  YV L+N+YAA   W +   +R  M 
Sbjct: 667 WRTLLGAARVHRNVELGELAAEKLISLQPEDSAA-YVLLSNMYAAAGNWQERTNVRKLMD 725

Query: 404 ENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALH 463
           +  V K PGYSWIEV    + F +GD  HP    I+ KL EL  R+K AGY PD +   H
Sbjct: 726 KRKVKKEPGYSWIEVKNKTYSFLAGDLTHPLSNQIYSKLSELSIRLKDAGYQPDTKNVFH 785

Query: 464 AVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREI 523
            + +E KE +L  HSE+LAIAFGLI  P   PI++ KNLRVCGDCH  TK +S +E+R I
Sbjct: 786 DIEDEQKETILSHHSERLAIAFGLIATPPEIPIQIVKNLRVCGDCHNFTKLVSLVEQRYI 845

Query: 524 IVRDTTRFHHFKDGTCSCGDYW 545
           +VRD+ RFHHFKDG CSCGDYW
Sbjct: 846 VVRDSNRFHHFKDGLCSCGDYW 867



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 96/373 (25%), Positives = 164/373 (43%), Gaps = 56/373 (15%)

Query: 23  LKDAQELFDKIPQPDVVSYNIMLSCILLNSD-----DVVAAFDFFQRLPIKDTASWNTMI 77
           + D + +FD++ + +VVS+  +L+    N       ++     +   LP + T S  T+I
Sbjct: 144 VNDGRRVFDEMGERNVVSWTSLLAGYSWNGLYGYVWELFCQMQYEGVLPNRYTVS--TVI 201

Query: 78  SGFV---------QKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAP 128
           +  V         Q   M        A+P  NS     +IS Y   G L  A ++F    
Sbjct: 202 AALVNEGVVGIGLQVHAMVVKHGFEEAIPVFNS-----LISLYSRLGMLRDARDVFDKME 256

Query: 129 VKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSL 188
           ++  V W +MI+     GYV N    +  ++   M   G++P   + +SV+  C+ L  L
Sbjct: 257 IRDWVTWNSMIA-----GYVRNGQDLEVFEIFNKMQLAGVKPTHMTFASVIKSCASLREL 311

Query: 189 QLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF-LEIQRKDVVTWNAMISG 247
            L K +     KS    D   +T L+    KC +++DA  LF L  + K+VV+W AMISG
Sbjct: 312 ALVKLMQCKALKSGFTTDQIVITALMVALSKCKEMDDALSLFSLMEEGKNVVSWTAMISG 371

Query: 248 YAQHGKGEKALRLFDKMKDEGMKPDSITFVALL---------------LACNHAGLVDLG 292
             Q+G  ++A+ LF +M+ EG+KP+  T+ A+L               +  N+     +G
Sbjct: 372 CLQNGGNDQAVNLFSQMRREGVKPNHFTYSAILTVHYPVFVSEMHAEVIKTNYERSSSVG 431

Query: 293 IQYFDSM---------VNDYGIAAKPD--HYTCMVDLLGRAGKLVEAVDLIKKM---PFK 338
               D+          V  + I    D   ++ M+    + G+  EA  L  ++     K
Sbjct: 432 TALLDAYVKLGNTIDAVKVFEIIEAKDLMAWSAMLAGYAQTGETEEAAKLFHQLIKEGIK 491

Query: 339 PQPAIFGTLLSAC 351
           P    F ++++AC
Sbjct: 492 PNEFTFSSVINAC 504



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 73/296 (24%), Positives = 140/296 (47%), Gaps = 43/296 (14%)

Query: 75  TMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVA 134
           +++  +++ +N+   R +F  M E+N VSW+++++GY                      +
Sbjct: 133 SLVDMYMKTENVNDGRRVFDEMGERNVVSWTSLLAGY----------------------S 170

Query: 135 WTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQV 194
           W  +      +GYV   W     +L   M   G+ PN  ++S+V+    +   + +G QV
Sbjct: 171 WNGL------YGYV---W-----ELFCQMQYEGVLPNRYTVSTVIAALVNEGVVGIGLQV 216

Query: 195 HQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKG 254
           H +V K    +       LIS+Y + G L DA  +F +++ +D VTWN+MI+GY ++G+ 
Sbjct: 217 HAMVVKHGFEEAIPVFNSLISLYSRLGMLRDARDVFDKMEIRDWVTWNSMIAGYVRNGQD 276

Query: 255 EKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG-IQYFDSMVNDYGIAAKPDHYT 313
            +   +F+KM+  G+KP  +TF +++ +C  A L +L  ++         G        T
Sbjct: 277 LEVFEIFNKMQLAGVKPTHMTFASVIKSC--ASLRELALVKLMQCKALKSGFTTDQIVIT 334

Query: 314 CMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFN 369
            ++  L +  ++ +A+ L   M        +  ++S C  +   D     A+NLF+
Sbjct: 335 ALMVALSKCKEMDDALSLFSLMEEGKNVVSWTAMISGCLQNGGND----QAVNLFS 386



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 61/231 (26%), Positives = 113/231 (48%), Gaps = 2/231 (0%)

Query: 145 FGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLC 204
           F Y  +   ++ L L   ++   ++P+ S+LS V   C+     +LG+QVH    K  L 
Sbjct: 66  FSYSRDKQTKEALNLFVSLLHSSLQPDESTLSCVFNICAGSLDGKLGRQVHCQCVKFGLV 125

Query: 205 KDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKM 264
              +  T L+ MY K  ++ D  ++F E+  ++VV+W ++++GY+ +G       LF +M
Sbjct: 126 DHVSVGTSLVDMYMKTENVNDGRRVFDEMGERNVVSWTSLLAGYSWNGLYGYVWELFCQM 185

Query: 265 KDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGK 324
           + EG+ P+  T   ++ A  + G+V +G+Q   +MV  +G       +  ++ L  R G 
Sbjct: 186 QYEGVLPNRYTVSTVIAALVNEGVVGIGLQ-VHAMVVKHGFEEAIPVFNSLISLYSRLGM 244

Query: 325 LVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAE-FAAMNLFNLNPAN 374
           L +A D+  KM  +        +    R  + L++ E F  M L  + P +
Sbjct: 245 LRDARDVFDKMEIRDWVTWNSMIAGYVRNGQDLEVFEIFNKMQLAGVKPTH 295


>gi|297740626|emb|CBI30808.3| unnamed protein product [Vitis vinifera]
          Length = 660

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 233/586 (39%), Positives = 328/586 (55%), Gaps = 49/586 (8%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  ++ V+W +++ GF  Q GK++ A+ LF K+P  D+ ++N M+     N   V     
Sbjct: 83  MPERSVVSWTTMINGFL-QFGKIEVAEGLFYKMPFRDIAAWNSMIYGYCCNG-RVEDGLR 140

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM--------PEKNSVSW-------- 104
            FQ +P ++  SW +MI G  Q     +A  LF  M        P  ++           
Sbjct: 141 LFQEMPCRNVISWTSMIGGLDQHGRSEEALGLFRQMMGCGVEVKPTSSTYCCVITACANA 200

Query: 105 -------------------------SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMI 139
                                    +A+I+ Y  C Q++ ++ +F      +VV WTA++
Sbjct: 201 SALYQGVQIHAHVFKLGYSFDAYISAALITFYANCKQMEDSLRVFHGKLHMNVVIWTALV 260

Query: 140 SGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVF 199
           +GY       N   ED LK+   M+  G+ PN SS +S L  C  L +L  G+++H    
Sbjct: 261 TGYGL-----NCKHEDALKVFGEMMREGVLPNQSSFTSALNSCCGLEALDWGREIHTAAV 315

Query: 200 KSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALR 259
           K  L  D      LI MY +CG+L D   +F  I +K++V+WN++I G AQHG G  AL 
Sbjct: 316 KLGLETDVFVGNSLIVMYYRCGNLNDGVVIFKRISKKNIVSWNSVIVGCAQHGCGMWALA 375

Query: 260 LFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLL 319
            F++M    ++PD ITF  LL AC+H+G+   G   F     +     K DHY CMVD+L
Sbjct: 376 FFNQMVRSMVEPDEITFTGLLSACSHSGMSQKGRCLFKYFSENKSAEVKLDHYACMVDIL 435

Query: 320 GRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCY 379
           GR+GKL EA +LI+ MP K    ++  LLSAC +H +L++AE AA  + +L P + +  Y
Sbjct: 436 GRSGKLEEAEELIRNMPVKANSMVWLVLLSACTMHSKLEVAERAAKCIIDLEP-HCSSAY 494

Query: 380 VQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIH 439
           V L+N+YA+  +W DV+RIR  MK+  + K PG SWI +    +EF SGDR HP    I+
Sbjct: 495 VLLSNLYASASRWSDVSRIRREMKQRGITKQPGRSWITIKGWRNEFLSGDRSHPSSDRIY 554

Query: 440 EKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVF 499
           +KL+ L  ++K  GYVPD  FALH V +E KE +L +HSE+LAI FGLI    G+ I V 
Sbjct: 555 QKLEWLGGKLKELGYVPDQRFALHDVEDEQKEVMLSYHSERLAIGFGLISTVEGSTITVM 614

Query: 500 KNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           KNLRVCGDCH A K I+ I +R+IIVRD+TRFHHF DG CSCGDYW
Sbjct: 615 KNLRVCGDCHSAIKLIAKIVRRKIIVRDSTRFHHFMDGRCSCGDYW 660



 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 107/361 (29%), Positives = 180/361 (49%), Gaps = 31/361 (8%)

Query: 22  KLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFV 81
           ++ +A+ +FDK+  PDV  Y +M++    N      A   F  +P+KD  SWN+MI G  
Sbjct: 10  RIDEARTVFDKVSFPDVYLYTMMITGYARNYR-FDHALQLFYEMPVKDVVSWNSMIKGCF 68

Query: 82  QKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISG 141
              ++  AR LF  MPE++ VSW+ MI+G+++ G+++ A  LF   P + + AW +MI G
Sbjct: 69  DCADLTMARKLFDEMPERSVVSWTTMINGFLQFGKIEVAEGLFYKMPFRDIAAWNSMIYG 128

Query: 142 YMKFGYVEN--------------SW------------AEDGLKLLRMMIGLG--IRPNAS 173
           Y   G VE+              SW            +E+ L L R M+G G  ++P +S
Sbjct: 129 YCCNGRVEDGLRLFQEMPCRNVISWTSMIGGLDQHGRSEEALGLFRQMMGCGVEVKPTSS 188

Query: 174 SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI 233
           +   V+  C++ S+L  G Q+H  VFK     D      LI+ Y  C  +ED+ ++F   
Sbjct: 189 TYCCVITACANASALYQGVQIHAHVFKLGYSFDAYISAALITFYANCKQMEDSLRVFHGK 248

Query: 234 QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGI 293
              +VV W A+++GY  + K E AL++F +M  EG+ P+  +F + L +C     +D G 
Sbjct: 249 LHMNVVIWTALVTGYGLNCKHEDALKVFGEMMREGVLPNQSSFTSALNSCCGLEALDWGR 308

Query: 294 QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRV 353
           +   + V   G+         ++ +  R G L + V + K++  K     + +++  C  
Sbjct: 309 EIHTAAVK-LGLETDVFVGNSLIVMYYRCGNLNDGVVIFKRIS-KKNIVSWNSVIVGCAQ 366

Query: 354 H 354
           H
Sbjct: 367 H 367


>gi|21741755|emb|CAD39781.1| OSJNBa0060B20.9 [Oryza sativa Japonica Group]
          Length = 897

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 228/596 (38%), Positives = 339/596 (56%), Gaps = 69/596 (11%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFF-----QR 64
           N+++  +AK  G +++A ++F+ +   DVVS+N M++     S +  AAF+ F     + 
Sbjct: 311 NALIDAYAKC-GLMENAVKVFNMMEFKDVVSWNAMVAG-YSQSGNFEAAFELFKNMRKEN 368

Query: 65  LPIKDTASWNTMISGFVQKKNMAKARDLFLAM---------------------------- 96
           +P+ D  +W  +I+G+ Q+    +A +LF  M                            
Sbjct: 369 IPL-DVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTIISVLSACASLGAFSQG 427

Query: 97  ---------------------PEKNSVSWSAMISGYIECGQLDKAVELFKVAPV--KSVV 133
                                 +++ + ++A+I  Y +C     A  +F   P+  ++VV
Sbjct: 428 TEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVV 487

Query: 134 AWTAMISGYMKFGYVENSWAEDGLKLLRMMIG--LGIRPNASSLSSVLLGCSHLSSLQLG 191
            WT MI G+ ++G      + D LKL   MI    G+ PNA ++S +L+ C+HL+++++G
Sbjct: 488 TWTVMIGGHAQYGD-----SNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIG 542

Query: 192 KQVHQLVFKSPLCKDTTALTP--LISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYA 249
           KQ+H  V +    + +       LI MY KCGD++ A  +F  + +K  ++W +M++GY 
Sbjct: 543 KQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYG 602

Query: 250 QHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKP 309
            HG+G +AL +FDKM+  G  PD ITF+ +L AC+H G+VD G+ YFDSM  DYG+  + 
Sbjct: 603 MHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRA 662

Query: 310 DHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFN 369
           +HY C +DLL R+G+L +A   +K MP +P   ++  LLSACRVH  ++LAE A   L  
Sbjct: 663 EHYACAIDLLARSGRLDKAWRTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKLVE 722

Query: 370 LNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGD 429
           +N  N  G Y  ++NIYA   +W DVARIR  MK++ + K PG SW++       F  GD
Sbjct: 723 MNAEND-GSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQGQKGTASFFVGD 781

Query: 430 RVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIK 489
           R HP    I+  L+ L  R+K  GYVP+  FALH V EE K  LL+ HSEKLA+A+GL+ 
Sbjct: 782 RSHPLSPQIYALLESLIDRIKAMGYVPETNFALHDVDEEEKNNLLVEHSEKLALAYGLLT 841

Query: 490 VPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
              G PIR+ KNLRVCGDCH A  YIS I   EI+VRD +RFHHFK+G+CSCG YW
Sbjct: 842 TSPGCPIRITKNLRVCGDCHSAFTYISKIVDHEIVVRDPSRFHHFKNGSCSCGGYW 897



 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 125/455 (27%), Positives = 195/455 (42%), Gaps = 86/455 (18%)

Query: 3   VKTTVNWNSVLAGFAKQRGKLKDAQELFDKIP----------QPDVVS-YNIMLSCILLN 51
           +   ++WNS+++   K       A +LF K+           + D++S  NI+ +C  L 
Sbjct: 228 IDDVISWNSIVSAHVKSSNAWT-ALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLK 286

Query: 52  SDDVVAAF--DFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMIS 109
           +         +  +     D    N +I  + +   M  A  +F  M  K+ VSW+AM++
Sbjct: 287 AVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVA 346

Query: 110 GYIECGQLDKAVELFKVAPVKS----VVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIG 165
           GY + G  + A ELFK    ++    VV WTA+I+GY + G      + + L L R MI 
Sbjct: 347 GYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGC-----SHEALNLFRQMIF 401

Query: 166 LGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLC----------KDTTALTPLIS 215
            G  PN  ++ SVL  C+ L +   G ++H    K+ L           +D      LI 
Sbjct: 402 SGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALID 461

Query: 216 MYCKCGDLEDACKLF--LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE--GMKP 271
           MY KC   + A  +F  + ++ ++VVTW  MI G+AQ+G    AL+LF +M  E  G+ P
Sbjct: 462 MYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAP 521

Query: 272 DSITFVALLLACNH-------------------------------------AGLVDLGIQ 294
           ++ T   +L+AC H                                      G VD    
Sbjct: 522 NAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARH 581

Query: 295 YFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM---PFKPQPAIFGTLLSAC 351
            FDSM     I+     +T M+   G  G+  EA+D+  KM    F P    F  +L AC
Sbjct: 582 VFDSMSQKSAIS-----WTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYAC 636

Query: 352 RVHKRLD--LAEFAAMNL-FNLNP-ANAAGCYVQL 382
                +D  L+ F +M+  + L P A    C + L
Sbjct: 637 SHCGMVDQGLSYFDSMSADYGLTPRAEHYACAIDL 671



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 60/210 (28%), Positives = 107/210 (50%), Gaps = 10/210 (4%)

Query: 98  EKNSVSWSAMISGYIECGQLDKAVELFKVAP---VKSVVAWTAMISGYMKFGYVENSW-A 153
           E N    +A+++ Y  CG L++A  +F       +  V++W +++S ++K     N+W A
Sbjct: 194 ESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVK---SSNAWTA 250

Query: 154 EDGLKLLRMMIG---LGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTAL 210
            D    + +++       R +  S+ ++L  C  L ++   K+VH    ++    D    
Sbjct: 251 LDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVG 310

Query: 211 TPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMK 270
             LI  Y KCG +E+A K+F  ++ KDVV+WNAM++GY+Q G  E A  LF  M+ E + 
Sbjct: 311 NALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIP 370

Query: 271 PDSITFVALLLACNHAGLVDLGIQYFDSMV 300
            D +T+ A++   +  G     +  F  M+
Sbjct: 371 LDVVTWTAVIAGYSQRGCSHEALNLFRQMI 400



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/245 (25%), Positives = 113/245 (46%), Gaps = 19/245 (7%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI 164
           + +++ Y+ CG  D A+ + +       V W  +I  ++K G ++++     + +   M+
Sbjct: 100 TGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSA-----INVSCRML 154

Query: 165 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 224
             G RP+  +L  VL  C  L S + G   H L+  +    +      L++MY +CG LE
Sbjct: 155 RAGTRPDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLE 214

Query: 225 DACKLFLEIQRK---DVVTWNAMISGYAQHGKGEKALRLFDKM------KDEGMKPDSIT 275
           +A  +F EI ++   DV++WN+++S + +      AL LF KM      K    + D I+
Sbjct: 215 EASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIIS 274

Query: 276 FVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY--TCMVDLLGRAGKLVEAVDLIK 333
            V +L AC     V    +   + + +      PD +    ++D   + G +  AV +  
Sbjct: 275 IVNILPACGSLKAVPQTKEVHGNAIRN---GTFPDVFVGNALIDAYAKCGLMENAVKVFN 331

Query: 334 KMPFK 338
            M FK
Sbjct: 332 MMEFK 336


>gi|359483597|ref|XP_002272690.2| PREDICTED: pentatricopeptide repeat-containing protein At5g46460,
           mitochondrial [Vitis vinifera]
          Length = 676

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 233/586 (39%), Positives = 328/586 (55%), Gaps = 49/586 (8%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  ++ V+W +++ GF  Q GK++ A+ LF K+P  D+ ++N M+     N   V     
Sbjct: 99  MPERSVVSWTTMINGFL-QFGKIEVAEGLFYKMPFRDIAAWNSMIYGYCCNGR-VEDGLR 156

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM--------PEKNSVSW-------- 104
            FQ +P ++  SW +MI G  Q     +A  LF  M        P  ++           
Sbjct: 157 LFQEMPCRNVISWTSMIGGLDQHGRSEEALGLFRQMMGCGVEVKPTSSTYCCVITACANA 216

Query: 105 -------------------------SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMI 139
                                    +A+I+ Y  C Q++ ++ +F      +VV WTA++
Sbjct: 217 SALYQGVQIHAHVFKLGYSFDAYISAALITFYANCKQMEDSLRVFHGKLHMNVVIWTALV 276

Query: 140 SGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVF 199
           +GY       N   ED LK+   M+  G+ PN SS +S L  C  L +L  G+++H    
Sbjct: 277 TGYGL-----NCKHEDALKVFGEMMREGVLPNQSSFTSALNSCCGLEALDWGREIHTAAV 331

Query: 200 KSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALR 259
           K  L  D      LI MY +CG+L D   +F  I +K++V+WN++I G AQHG G  AL 
Sbjct: 332 KLGLETDVFVGNSLIVMYYRCGNLNDGVVIFKRISKKNIVSWNSVIVGCAQHGCGMWALA 391

Query: 260 LFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLL 319
            F++M    ++PD ITF  LL AC+H+G+   G   F     +     K DHY CMVD+L
Sbjct: 392 FFNQMVRSMVEPDEITFTGLLSACSHSGMSQKGRCLFKYFSENKSAEVKLDHYACMVDIL 451

Query: 320 GRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCY 379
           GR+GKL EA +LI+ MP K    ++  LLSAC +H +L++AE AA  + +L P + +  Y
Sbjct: 452 GRSGKLEEAEELIRNMPVKANSMVWLVLLSACTMHSKLEVAERAAKCIIDLEP-HCSSAY 510

Query: 380 VQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIH 439
           V L+N+YA+  +W DV+RIR  MK+  + K PG SWI +    +EF SGDR HP    I+
Sbjct: 511 VLLSNLYASASRWSDVSRIRREMKQRGITKQPGRSWITIKGWRNEFLSGDRSHPSSDRIY 570

Query: 440 EKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVF 499
           +KL+ L  ++K  GYVPD  FALH V +E KE +L +HSE+LAI FGLI    G+ I V 
Sbjct: 571 QKLEWLGGKLKELGYVPDQRFALHDVEDEQKEVMLSYHSERLAIGFGLISTVEGSTITVM 630

Query: 500 KNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           KNLRVCGDCH A K I+ I +R+IIVRD+TRFHHF DG CSCGDYW
Sbjct: 631 KNLRVCGDCHSAIKLIAKIVRRKIIVRDSTRFHHFMDGRCSCGDYW 676



 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 109/377 (28%), Positives = 188/377 (49%), Gaps = 32/377 (8%)

Query: 6   TVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRL 65
           T ++ S++    + + ++ +A+ +FDK+  PDV  Y +M++    N      A   F  +
Sbjct: 11  TFSYQSMITDHLRNQ-RIDEARTVFDKVSFPDVYLYTMMITGYARNYR-FDHALQLFYEM 68

Query: 66  PIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFK 125
           P+KD  SWN+MI G     ++  AR LF  MPE++ VSW+ MI+G+++ G+++ A  LF 
Sbjct: 69  PVKDVVSWNSMIKGCFDCADLTMARKLFDEMPERSVVSWTTMINGFLQFGKIEVAEGLFY 128

Query: 126 VAPVKSVVAWTAMISGYMKFGYVEN--------------SW------------AEDGLKL 159
             P + + AW +MI GY   G VE+              SW            +E+ L L
Sbjct: 129 KMPFRDIAAWNSMIYGYCCNGRVEDGLRLFQEMPCRNVISWTSMIGGLDQHGRSEEALGL 188

Query: 160 LRMMIGLG--IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMY 217
            R M+G G  ++P +S+   V+  C++ S+L  G Q+H  VFK     D      LI+ Y
Sbjct: 189 FRQMMGCGVEVKPTSSTYCCVITACANASALYQGVQIHAHVFKLGYSFDAYISAALITFY 248

Query: 218 CKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFV 277
             C  +ED+ ++F      +VV W A+++GY  + K E AL++F +M  EG+ P+  +F 
Sbjct: 249 ANCKQMEDSLRVFHGKLHMNVVIWTALVTGYGLNCKHEDALKVFGEMMREGVLPNQSSFT 308

Query: 278 ALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPF 337
           + L +C     +D G +   + V   G+         ++ +  R G L + V + K++  
Sbjct: 309 SALNSCCGLEALDWGREIHTAAVK-LGLETDVFVGNSLIVMYYRCGNLNDGVVIFKRIS- 366

Query: 338 KPQPAIFGTLLSACRVH 354
           K     + +++  C  H
Sbjct: 367 KKNIVSWNSVIVGCAQH 383


>gi|115457318|ref|NP_001052259.1| Os04g0218100 [Oryza sativa Japonica Group]
 gi|113563830|dbj|BAF14173.1| Os04g0218100, partial [Oryza sativa Japonica Group]
          Length = 890

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 228/596 (38%), Positives = 339/596 (56%), Gaps = 69/596 (11%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFF-----QR 64
           N+++  +AK  G +++A ++F+ +   DVVS+N M++     S +  AAF+ F     + 
Sbjct: 304 NALIDAYAKC-GLMENAVKVFNMMEFKDVVSWNAMVAG-YSQSGNFEAAFELFKNMRKEN 361

Query: 65  LPIKDTASWNTMISGFVQKKNMAKARDLFLAM---------------------------- 96
           +P+ D  +W  +I+G+ Q+    +A +LF  M                            
Sbjct: 362 IPL-DVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTIISVLSACASLGAFSQG 420

Query: 97  ---------------------PEKNSVSWSAMISGYIECGQLDKAVELFKVAPV--KSVV 133
                                 +++ + ++A+I  Y +C     A  +F   P+  ++VV
Sbjct: 421 TEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVV 480

Query: 134 AWTAMISGYMKFGYVENSWAEDGLKLLRMMIG--LGIRPNASSLSSVLLGCSHLSSLQLG 191
            WT MI G+ ++G      + D LKL   MI    G+ PNA ++S +L+ C+HL+++++G
Sbjct: 481 TWTVMIGGHAQYGD-----SNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIG 535

Query: 192 KQVHQLVFKSPLCKDTTALTP--LISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYA 249
           KQ+H  V +    + +       LI MY KCGD++ A  +F  + +K  ++W +M++GY 
Sbjct: 536 KQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYG 595

Query: 250 QHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKP 309
            HG+G +AL +FDKM+  G  PD ITF+ +L AC+H G+VD G+ YFDSM  DYG+  + 
Sbjct: 596 MHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRA 655

Query: 310 DHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFN 369
           +HY C +DLL R+G+L +A   +K MP +P   ++  LLSACRVH  ++LAE A   L  
Sbjct: 656 EHYACAIDLLARSGRLDKAWRTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKLVE 715

Query: 370 LNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGD 429
           +N  N  G Y  ++NIYA   +W DVARIR  MK++ + K PG SW++       F  GD
Sbjct: 716 MNAEND-GSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQGQKGTASFFVGD 774

Query: 430 RVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIK 489
           R HP    I+  L+ L  R+K  GYVP+  FALH V EE K  LL+ HSEKLA+A+GL+ 
Sbjct: 775 RSHPLSPQIYALLESLIDRIKAMGYVPETNFALHDVDEEEKNNLLVEHSEKLALAYGLLT 834

Query: 490 VPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
              G PIR+ KNLRVCGDCH A  YIS I   EI+VRD +RFHHFK+G+CSCG YW
Sbjct: 835 TSPGCPIRITKNLRVCGDCHSAFTYISKIVDHEIVVRDPSRFHHFKNGSCSCGGYW 890



 Score =  138 bits (347), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 125/455 (27%), Positives = 195/455 (42%), Gaps = 86/455 (18%)

Query: 3   VKTTVNWNSVLAGFAKQRGKLKDAQELFDKIP----------QPDVVS-YNIMLSCILLN 51
           +   ++WNS+++   K       A +LF K+           + D++S  NI+ +C  L 
Sbjct: 221 IDDVISWNSIVSAHVKSSNAWT-ALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLK 279

Query: 52  SDDVVAAF--DFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMIS 109
           +         +  +     D    N +I  + +   M  A  +F  M  K+ VSW+AM++
Sbjct: 280 AVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVA 339

Query: 110 GYIECGQLDKAVELFKVAPVKS----VVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIG 165
           GY + G  + A ELFK    ++    VV WTA+I+GY + G      + + L L R MI 
Sbjct: 340 GYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRG-----CSHEALNLFRQMIF 394

Query: 166 LGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLC----------KDTTALTPLIS 215
            G  PN  ++ SVL  C+ L +   G ++H    K+ L           +D      LI 
Sbjct: 395 SGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALID 454

Query: 216 MYCKCGDLEDACKLF--LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE--GMKP 271
           MY KC   + A  +F  + ++ ++VVTW  MI G+AQ+G    AL+LF +M  E  G+ P
Sbjct: 455 MYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAP 514

Query: 272 DSITFVALLLACNH-------------------------------------AGLVDLGIQ 294
           ++ T   +L+AC H                                      G VD    
Sbjct: 515 NAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARH 574

Query: 295 YFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM---PFKPQPAIFGTLLSAC 351
            FDSM     I+     +T M+   G  G+  EA+D+  KM    F P    F  +L AC
Sbjct: 575 VFDSMSQKSAIS-----WTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYAC 629

Query: 352 RVHKRLD--LAEFAAMNL-FNLNP-ANAAGCYVQL 382
                +D  L+ F +M+  + L P A    C + L
Sbjct: 630 SHCGMVDQGLSYFDSMSADYGLTPRAEHYACAIDL 664



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 60/210 (28%), Positives = 107/210 (50%), Gaps = 10/210 (4%)

Query: 98  EKNSVSWSAMISGYIECGQLDKAVELFKVAP---VKSVVAWTAMISGYMKFGYVENSW-A 153
           E N    +A+++ Y  CG L++A  +F       +  V++W +++S ++K     N+W A
Sbjct: 187 ESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVK---SSNAWTA 243

Query: 154 EDGLKLLRMMIG---LGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTAL 210
            D    + +++       R +  S+ ++L  C  L ++   K+VH    ++    D    
Sbjct: 244 LDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVG 303

Query: 211 TPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMK 270
             LI  Y KCG +E+A K+F  ++ KDVV+WNAM++GY+Q G  E A  LF  M+ E + 
Sbjct: 304 NALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIP 363

Query: 271 PDSITFVALLLACNHAGLVDLGIQYFDSMV 300
            D +T+ A++   +  G     +  F  M+
Sbjct: 364 LDVVTWTAVIAGYSQRGCSHEALNLFRQMI 393



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/245 (25%), Positives = 113/245 (46%), Gaps = 19/245 (7%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI 164
           + +++ Y+ CG  D A+ + +       V W  +I  ++K G ++++     + +   M+
Sbjct: 93  TGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSA-----INVSCRML 147

Query: 165 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 224
             G RP+  +L  VL  C  L S + G   H L+  +    +      L++MY +CG LE
Sbjct: 148 RAGTRPDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLE 207

Query: 225 DACKLFLEIQRK---DVVTWNAMISGYAQHGKGEKALRLFDKM------KDEGMKPDSIT 275
           +A  +F EI ++   DV++WN+++S + +      AL LF KM      K    + D I+
Sbjct: 208 EASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIIS 267

Query: 276 FVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY--TCMVDLLGRAGKLVEAVDLIK 333
            V +L AC     V    +   + + +      PD +    ++D   + G +  AV +  
Sbjct: 268 IVNILPACGSLKAVPQTKEVHGNAIRN---GTFPDVFVGNALIDAYAKCGLMENAVKVFN 324

Query: 334 KMPFK 338
            M FK
Sbjct: 325 MMEFK 329


>gi|225466163|ref|XP_002263755.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 624

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 227/566 (40%), Positives = 331/566 (58%), Gaps = 46/566 (8%)

Query: 19  QRGKLKDAQELFDKIPQPDVVSYNIML----------SCILLNSDDVVAAF--DFFQRLP 66
           + G L  A E+FDKIP PD   YN +           +CI + S  +  +   + F   P
Sbjct: 66  KSGDLNYALEVFDKIPHPDAYIYNTIFRGYLRWQLARNCIFMYSRMLHKSVSPNKFTYPP 125

Query: 67  I--------------------------KDTASWNTMISGFVQKKNMAKARDLFLAMPEKN 100
           +                           D  S N +I  +V  +++ +AR +F  MP+++
Sbjct: 126 LIRACCIDYAIEEGKQIHAHVLKFGFGADGFSLNNLIHMYVNFQSLEQARRVFDNMPQRD 185

Query: 101 SVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAE-DGLKL 159
            VSW+++I+GY + G +DKA E+F++ P ++ V+W AMI+ Y++   +  ++A  D ++L
Sbjct: 186 VVSWTSLITGYSQWGFVDKAREVFELMPERNSVSWNAMIAAYVQSNRLHEAFALFDRMRL 245

Query: 160 LRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCK 219
             +++      +    +S+L  C+ L +L+ GK +H  + KS +  D+   T +I MYCK
Sbjct: 246 ENVVL------DKFVAASMLSACTGLGALEQGKWIHGYIEKSGIELDSKLATTVIDMYCK 299

Query: 220 CGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVAL 279
           CG LE A ++F E+ +K + +WN MI G A HGKGE A+ LF +M+ E + PD ITFV +
Sbjct: 300 CGCLEKASEVFNELPQKGISSWNCMIGGLAMHGKGEAAIELFKEMEREMVAPDGITFVNV 359

Query: 280 LLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKP 339
           L AC H+GLV+ G  YF  M    G+    +H+ CMVDLLGRAG L EA  LI +MP  P
Sbjct: 360 LSACAHSGLVEEGKHYFQYMTEVLGLKPGMEHFGCMVDLLGRAGLLEEARKLINEMPVNP 419

Query: 340 QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIR 399
              + G L+ ACR+H   +L E     +  L P N+ G YV LAN+YA+  +W+DVA++R
Sbjct: 420 DAGVLGALVGACRIHGNTELGEQIGKKVIELEPHNS-GRYVLLANLYASAGRWEDVAKVR 478

Query: 400 LSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLE 459
             M +  V K PG+S IE  + V EF +G R HP+   I+ KL E+ + ++  GYVPD +
Sbjct: 479 KLMNDRGVKKAPGFSMIESESGVDEFIAGGRAHPQAKEIYAKLDEILETIRSIGYVPDTD 538

Query: 460 FALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIE 519
             LH + EE KE  L +HSEKLAIAFGL+K   G  +R+ KNLR+C DCH+A+K IS + 
Sbjct: 539 GVLHDIDEEEKENPLYYHSEKLAIAFGLLKTKPGETLRISKNLRICRDCHQASKLISKVY 598

Query: 520 KREIIVRDTTRFHHFKDGTCSCGDYW 545
            REII+RD  RFHHF+ G CSC DYW
Sbjct: 599 DREIIIRDRNRFHHFRMGGCSCKDYW 624



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 78/331 (23%), Positives = 146/331 (44%), Gaps = 43/331 (12%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  +  V+W S++ G++ Q G +  A+E+F+ +P+ + VS+N M++   + S+ +  AF 
Sbjct: 181 MPQRDVVSWTSLITGYS-QWGFVDKAREVFELMPERNSVSWNAMIAA-YVQSNRLHEAFA 238

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDL--------FLAMPEKNSVSW-----SAM 107
            F R+ ++     N ++  FV    ++    L             EK+ +       + +
Sbjct: 239 LFDRMRLE-----NVVLDKFVAASMLSACTGLGALEQGKWIHGYIEKSGIELDSKLATTV 293

Query: 108 ISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLG 167
           I  Y +CG L+KA E+F   P K + +W  MI G    G       E  ++L + M    
Sbjct: 294 IDMYCKCGCLEKASEVFNELPQKGISSWNCMIGGLAMHGK-----GEAAIELFKEMEREM 348

Query: 168 IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTP-------LISMYCKC 220
           + P+  +  +VL  C+H   ++ GK   Q +       +   L P       ++ +  + 
Sbjct: 349 VAPDGITFVNVLSACAHSGLVEEGKHYFQYM------TEVLGLKPGMEHFGCMVDLLGRA 402

Query: 221 GDLEDACKLFLEIQ-RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKP-DSITFVA 278
           G LE+A KL  E+    D     A++     HG  E   ++  K+ +  ++P +S  +V 
Sbjct: 403 GLLEEARKLINEMPVNPDAGVLGALVGACRIHGNTELGEQIGKKVIE--LEPHNSGRYVL 460

Query: 279 LLLACNHAGLVDLGIQYFDSMVNDYGIAAKP 309
           L      AG  +  +     ++ND G+   P
Sbjct: 461 LANLYASAGRWE-DVAKVRKLMNDRGVKKAP 490



 Score = 45.4 bits (106), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 41/178 (23%), Positives = 75/178 (42%), Gaps = 11/178 (6%)

Query: 168 IRPNASSLSSV------LLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYC--- 218
           ++ +  SLSS       L G    S++   KQ H  + +  L  D  A+  +I  +C   
Sbjct: 7   LQASPPSLSSAKAHKLPLYGLDSCSTMAELKQYHSQIIRLGLSADNDAMGRVIK-FCAIS 65

Query: 219 KCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVA 278
           K GDL  A ++F +I   D   +N +  GY +       + ++ +M  + + P+  T+  
Sbjct: 66  KSGDLNYALEVFDKIPHPDAYIYNTIFRGYLRWQLARNCIFMYSRMLHKSVSPNKFTYPP 125

Query: 279 LLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 336
           L+ AC     ++ G Q   + V  +G  A       ++ +      L +A  +   MP
Sbjct: 126 LIRACCIDYAIEEGKQ-IHAHVLKFGFGADGFSLNNLIHMYVNFQSLEQARRVFDNMP 182


>gi|224068783|ref|XP_002302824.1| predicted protein [Populus trichocarpa]
 gi|222844550|gb|EEE82097.1| predicted protein [Populus trichocarpa]
          Length = 581

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 230/542 (42%), Positives = 325/542 (59%), Gaps = 15/542 (2%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFF-QRLPIK 68
           NS++  + K   K + ++++FD++P  + VS++ ++    L  D     F  F Q L   
Sbjct: 49  NSLITMYGKC-DKYELSRQVFDEMPDKNAVSWSAIIGA-CLQDDRCKEGFSLFRQMLSEG 106

Query: 69  DTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISGYIECGQLDKAVELF 124
              S   +++     ++  +A D++  + E     +    SA    +  CG+++ A +LF
Sbjct: 107 SRPSRGAILNAMACVRSHEEADDVYRVVVENGLDFDQSVQSAAAGMFARCGRVEVARKLF 166

Query: 125 KVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSH 184
                K +V W   I  Y+K          + L LL+ M+  GI P+A +L  V+  CS 
Sbjct: 167 DGIMSKDLVTWATTIEAYVK-----ADMPLEALGLLKQMMLQGIFPDAITLLGVIRACST 221

Query: 185 LSSLQLGKQVHQLVFKSPLCKDTTAL-TPLISMYCKCGDLEDACKLFLEIQRKDVVTWNA 243
           L+S QL   VH ++          A+ T LI +Y KCG L  A K+F  +Q ++++TW+A
Sbjct: 222 LASFQLAHIVHGIITTGFFYNQLLAVETALIDLYVKCGSLTYARKVFDGMQERNIITWSA 281

Query: 244 MISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDY 303
           MISGY  HG G +AL LFD+MK   +KPD ITFV++L AC+H+GLV  G + F+SM  D+
Sbjct: 282 MISGYGMHGWGREALNLFDQMK-ASVKPDHITFVSILSACSHSGLVAEGWECFNSMARDF 340

Query: 304 GIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFA 363
           G+  +P+HY CMVD+LGRAGKL EA D I++MP +P  A++G LL ACR+H  +DLAE  
Sbjct: 341 GVTPRPEHYACMVDILGRAGKLDEACDFIERMPVRPNAAVWGALLGACRIHLNVDLAEMV 400

Query: 364 AMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVH 423
           A  LF+L+P NA G YV L NIY    K  +   IR  MK   V K+ GYS IE+   ++
Sbjct: 401 ARALFDLDPHNA-GRYVILYNIYTLTGKRKEADSIRTLMKNRGVKKIAGYSVIEIKNKLY 459

Query: 424 EFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAI 483
            F +GDR HP+   I+ +L+ L  R++  GY PD+ F LH V EE KE +L  HSEKLAI
Sbjct: 460 AFVAGDRSHPQTDLIYSELERLMDRIRQEGYTPDINFVLHDVDEETKESMLYLHSEKLAI 519

Query: 484 AFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGD 543
            FGL+ +  G+ IR+ KNLRVCGDCH ATK+IS +  REI+VRD  RFHHFK+G CSC D
Sbjct: 520 VFGLLNLGPGSVIRIRKNLRVCGDCHTATKFISKVTGREIVVRDAHRFHHFKNGACSCRD 579

Query: 544 YW 545
           YW
Sbjct: 580 YW 581



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 57/109 (52%)

Query: 163 MIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGD 222
           M+ LGI+P+  +   ++  CS L   + G ++HQ V K            LI+MY KC  
Sbjct: 1   MLRLGIQPDNFTFPFIIKACSCLRHFEFGIRIHQDVVKFGYQSQVFISNSLITMYGKCDK 60

Query: 223 LEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKP 271
            E + ++F E+  K+ V+W+A+I    Q  + ++   LF +M  EG +P
Sbjct: 61  YELSRQVFDEMPDKNAVSWSAIIGACLQDDRCKEGFSLFRQMLSEGSRP 109


>gi|359488555|ref|XP_003633777.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like, partial [Vitis vinifera]
          Length = 825

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 212/555 (38%), Positives = 334/555 (60%), Gaps = 18/555 (3%)

Query: 3   VKTTVNWN----SVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAA 58
           +KT   WN    + L  F  +   + DA++LFD++P+ D VSYN+++S    +     A 
Sbjct: 277 IKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWDGKHKYA- 335

Query: 59  FDFFQRLPI----KDTASWNTMISGFVQKKNMAKARDL----FLAMPEKNSVSWSAMISG 110
           FD F+ L      +    + TM+S      +    R +     +   +   +  ++++  
Sbjct: 336 FDLFRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQTIVTTADSEILVGNSLVDM 395

Query: 111 YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRP 170
           Y +CG+ ++A  +F     +S V WTAMIS Y++ G+ E     +GL+L   M    +  
Sbjct: 396 YAKCGKFEEAEMIFTNLTHRSAVPWTAMISAYVQKGFYE-----EGLQLFNKMRQASVIA 450

Query: 171 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 230
           + ++ +S+L   + ++SL LGKQ+H  + KS    +  + + L+ +Y KCG ++DA + F
Sbjct: 451 DQATFASLLRASASIASLSLGKQLHSFIIKSGFMSNVFSGSALLDVYAKCGSIKDAVQTF 510

Query: 231 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVD 290
            E+  +++V+WNAMIS YAQ+G+ E  L+ F +M   G++PDS++F+ +L AC+H+GLV+
Sbjct: 511 QEMPDRNIVSWNAMISAYAQNGEAEATLKSFKEMVLSGLQPDSVSFLGVLSACSHSGLVE 570

Query: 291 LGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSA 350
            G+ +F+SM   Y +  + +HY  +VD+L R+G+  EA  L+ +MP  P   ++ ++L+A
Sbjct: 571 EGLWHFNSMTQIYKLDPRREHYASVVDMLCRSGRFNEAEKLMAEMPIDPDEIMWSSVLNA 630

Query: 351 CRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKM 410
           CR+HK  +LA  AA  LFN+     A  YV ++NIYAA  +W++V+++  +M++  V K+
Sbjct: 631 CRIHKNQELARRAADQLFNMEELRDAAPYVNMSNIYAAAGQWENVSKVHKAMRDRGVKKL 690

Query: 411 PGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVK 470
           P YSW+E+    H F + DR HP++  I +K+  L K M+  GY PD   ALH   E+ K
Sbjct: 691 PAYSWVEIKHETHMFSANDRCHPQIEEIRKKIDMLTKTMEELGYKPDTSCALHNEDEKFK 750

Query: 471 EQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTR 530
            + L +HSE+LAIAF LI  P G+PI V KNLR C DCH A K IS I  REI VRD+TR
Sbjct: 751 VESLKYHSERLAIAFALISTPEGSPILVMKNLRACIDCHAAIKVISKIVGREITVRDSTR 810

Query: 531 FHHFKDGTCSCGDYW 545
           FHHF+DG CSCGD+W
Sbjct: 811 FHHFRDGFCSCGDFW 825



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 88/276 (31%), Positives = 142/276 (51%), Gaps = 22/276 (7%)

Query: 69  DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAP 128
           DT+  N  +  F++   +++AR LF  MP KN+VS + MISGY++ G L +A +LF    
Sbjct: 51  DTSRSNFRVGNFLKNGELSQARQLFEKMPHKNTVSTNMMISGYVKSGNLGEARKLFDGMV 110

Query: 129 VKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSL 188
            ++ V WT +I GY +    +     +  +L   M   G  P+  +  ++L GC+     
Sbjct: 111 ERTAVTWTILIGGYSQLNQFK-----EAFELFVQMQRCGTEPDYVTFVTLLSGCN---GH 162

Query: 189 QLGKQVHQ-------LVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTW 241
           ++G Q+ Q       L + S L    T    L+  YCK   L+ AC+LF E+   D V++
Sbjct: 163 EMGNQITQVQTQIIKLGYDSRLIVGNT----LVDSYCKSNRLDLACQLFKEMPEIDSVSY 218

Query: 242 NAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGI-QYFDSMV 300
           NAMI+GY++ G  EKA+ LF +M++ G+KP   TF A+L  C + GL D+ + Q   S V
Sbjct: 219 NAMITGYSKDGLDEKAVNLFVEMQNSGLKPTEFTFAAVL--CANIGLDDIVLGQQIHSFV 276

Query: 301 NDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 336
                         ++D   +   +++A  L  +MP
Sbjct: 277 IKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMP 312



 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 91/353 (25%), Positives = 154/353 (43%), Gaps = 54/353 (15%)

Query: 19  QRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMIS 78
           + G+L  A++LF+K+P  + VS N+M+S   + S ++  A   F  +  +   +W  +I 
Sbjct: 64  KNGELSQARQLFEKMPHKNTVSTNMMISG-YVKSGNLGEARKLFDGMVERTAVTWTILIG 122

Query: 79  GFVQKKNMAKARDLFLAM----PEKNSVSWSAMISG------------------------ 110
           G+ Q     +A +LF+ M     E + V++  ++SG                        
Sbjct: 123 GYSQLNQFKEAFELFVQMQRCGTEPDYVTFVTLLSGCNGHEMGNQITQVQTQIIKLGYDS 182

Query: 111 -----------YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKL 159
                      Y +  +LD A +LFK  P    V++ AMI+GY K G       E  + L
Sbjct: 183 RLIVGNTLVDSYCKSNRLDLACQLFKEMPEIDSVSYNAMITGYSKDGL-----DEKAVNL 237

Query: 160 LRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCK 219
              M   G++P   + ++VL     L  + LG+Q+H  V K+    +      L+  Y K
Sbjct: 238 FVEMQNSGLKPTEFTFAAVLCANIGLDDIVLGQQIHSFVIKTNFVWNVFVSNALLDFYSK 297

Query: 220 CGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVAL 279
              + DA KLF E+  +D V++N +ISGYA  GK + A  LF +++          F  +
Sbjct: 298 HDSVIDARKLFDEMPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQFTAFDRKQFPFATM 357

Query: 280 LLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY----TCMVDLLGRAGKLVEA 328
           L   ++    ++G Q     ++   I    D        +VD+  + GK  EA
Sbjct: 358 LSIASNTLDWEMGRQ-----IHAQTIVTTADSEILVGNSLVDMYAKCGKFEEA 405



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/195 (25%), Positives = 79/195 (40%), Gaps = 36/195 (18%)

Query: 177 SVLLGCSHLSS----LQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLE 232
           S  L  S L S    L +   +   + K+    DT+     +  + K G+L  A +LF +
Sbjct: 18  STFLKSSSLQSPKLRLNVVNNIDARIVKTGFDPDTSRSNFRVGNFLKNGELSQARQLFEK 77

Query: 233 IQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE------------------------- 267
           +  K+ V+ N MISGY + G   +A +LFD M +                          
Sbjct: 78  MPHKNTVSTNMMISGYVKSGNLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELF 137

Query: 268 ------GMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGR 321
                 G +PD +TFV LL  CN   + +  I    + +   G  ++      +VD   +
Sbjct: 138 VQMQRCGTEPDYVTFVTLLSGCNGHEMGN-QITQVQTQIIKLGYDSRLIVGNTLVDSYCK 196

Query: 322 AGKLVEAVDLIKKMP 336
           + +L  A  L K+MP
Sbjct: 197 SNRLDLACQLFKEMP 211


>gi|347954546|gb|AEP33773.1| organelle transcript processing 82, partial [Lobularia maritima]
          Length = 695

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 228/568 (40%), Positives = 331/568 (58%), Gaps = 48/568 (8%)

Query: 19  QRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMIS 78
           Q G+L+DA+++FD+    DVVSY  +++    +   + +A   F  +PIKD  SWN MIS
Sbjct: 135 QNGRLEDARKVFDQSSHRDVVSYTALITG-YASKGYIASAQKMFDEIPIKDVVSWNAMIS 193

Query: 79  GFVQKKNMAKARDLFLAM------PEKNSV--------------------SW-------- 104
           G+ +  N  +A +LF  M      P+++++                    SW        
Sbjct: 194 GYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIELGRQVHSWIDDHGFGS 253

Query: 105 -----SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKL 159
                +A+I  YI+CG+++ A  LF+    K V++W  +I GY      +     + L L
Sbjct: 254 NLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYK-----EALLL 308

Query: 160 LRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK--SPLCKDTTALTPLISMY 217
            + M+  G  PN  ++ S+L  C+HL ++++G+ +H  + K    +   ++  T LI MY
Sbjct: 309 FQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANASSHRTSLIDMY 368

Query: 218 CKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFV 277
            KCGD+E A ++F  I  + + +WNAMI G+A HG+   A  +F +M+   ++PD ITFV
Sbjct: 369 AKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIEPDDITFV 428

Query: 278 ALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPF 337
            LL AC+H+G++DLG   F SM  DY I  K +HY CM+DLLG +G   EA ++I  M  
Sbjct: 429 GLLSACSHSGMLDLGRHIFRSMKEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINTMEM 488

Query: 338 KPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVAR 397
           +P   I+ +LL AC++H  ++L E  A NL  + P N  G YV L+NIYA   +W++VA+
Sbjct: 489 EPDGVIWCSLLKACKMHGNVELGESYAQNLIKIEPKNP-GSYVLLSNIYATAGRWNEVAK 547

Query: 398 IRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPD 457
           IR  + +  + K+PG S IE+ +VVHEF  GD+ HP    I+  L+E+E  ++ AG+VPD
Sbjct: 548 IRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEEAGFVPD 607

Query: 458 LEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISA 517
               L  + EE KE  L  HSEKLAIAFGLI    GT + + KNLRVC +CH ATK IS 
Sbjct: 608 TSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISK 667

Query: 518 IEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           I KREII RD TRFHHF+DG CSC DYW
Sbjct: 668 IYKREIIARDRTRFHHFRDGVCSCNDYW 695



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 75/253 (29%), Positives = 118/253 (46%), Gaps = 37/253 (14%)

Query: 117 LDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLS 176
           L  A+ +F+     +++ W  M  G+       +S     L L   MI LG+ PN  +  
Sbjct: 38  LPYAISVFETIQEPNLLIWNTMFRGH-----ALSSDPVSALYLYVCMISLGLLPNCYTFP 92

Query: 177 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA---------- 226
            +L  C+   + + G+Q+H  V K     D    T LISMY + G LEDA          
Sbjct: 93  FLLKSCAKSKAFREGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHR 152

Query: 227 ---------------------CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMK 265
                                 K+F EI  KDVV+WNAMISGYA+ G  ++AL LF +M 
Sbjct: 153 DVVSYTALITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMM 212

Query: 266 DEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKL 325
              ++PD  T V+++ AC  +  ++LG Q   S ++D+G  +       ++DL  + G++
Sbjct: 213 KTNVRPDESTMVSVVSACAQSASIELGRQ-VHSWIDDHGFGSNLKIVNALIDLYIKCGEV 271

Query: 326 VEAVDLIKKMPFK 338
             A  L + + +K
Sbjct: 272 ETACGLFEGLSYK 284


>gi|168068035|ref|XP_001785902.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162662428|gb|EDQ49285.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 908

 Score =  423 bits (1088), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 243/618 (39%), Positives = 329/618 (53%), Gaps = 83/618 (13%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQ----PDVVSYNIMLSC------------ 47
           +  ++WN+++ G A Q G   +A  +F K+ Q    PD  +Y  +L+             
Sbjct: 298 RDVISWNAMIGGLA-QNGCGHEAFTIFLKMQQEGFVPDSTTYLSLLNTHVSTGAWEWVKE 356

Query: 48  -------ILLNSD-DVVAAFD--------------FFQRLPIKDTASWNTMISGFVQKKN 85
                  + L SD  V +AF                F +L +++  +WN MI G  Q+K 
Sbjct: 357 VHKHAVEVGLVSDLRVGSAFVHMYIRCGSIDDAQLIFDKLAVRNVTTWNAMIGGVAQQKC 416

Query: 86  MAKARDLFLAM------PE-------------KNSVSW-------------------SAM 107
             +A  LFL M      P+             + ++ W                   +A+
Sbjct: 417 GREALSLFLQMRREGFFPDATTFVNILSANVGEEALEWVKEVHSYAIDAGLVDLRVGNAL 476

Query: 108 ISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLG 167
           +  Y +CG    A ++F     ++V  WT MISG  + G        +   L   M+  G
Sbjct: 477 VHMYAKCGNTMYAKQVFDDMVERNVTTWTVMISGLAQHGC-----GHEAFSLFLQMLREG 531

Query: 168 IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC 227
           I P+A++  S+L  C+   +L+  K+VH     + L  D      L+ MY KCG ++DA 
Sbjct: 532 IVPDATTYVSILSACASTGALEWVKEVHSHAVNAGLVSDLRVGNALVHMYAKCGSVDDAR 591

Query: 228 KLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG 287
           ++F ++  +DV +W  MI G AQHG+G  AL LF KMK EG KP+  +FVA+L AC+HAG
Sbjct: 592 RVFDDMLERDVYSWTVMIGGLAQHGRGLDALDLFVKMKLEGFKPNGYSFVAVLSACSHAG 651

Query: 288 LVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTL 347
           LVD G + F S+  DYGI    +HYTCMVDLLGRAG+L EA   I  MP +P  A +G L
Sbjct: 652 LVDEGRRQFLSLTQDYGIEPTMEHYTCMVDLLGRAGQLEEAKHFILNMPIEPGDAPWGAL 711

Query: 348 LSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNV 407
           L AC  +  L++AEFAA     L P +A+  YV L+NIYAA   W+    +R  M+   +
Sbjct: 712 LGACVTYGNLEMAEFAAKERLKLKPKSAS-TYVLLSNIYAATGNWEQKLLVRSMMQRRGI 770

Query: 408 VKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGE 467
            K PG SWIEV   +H F  GD  HPE   I+ KLK+L KR+K  GYVPD    L    +
Sbjct: 771 RKEPGRSWIEVDNQIHSFVVGDTSHPESKEIYAKLKDLIKRLKAEGYVPDTRLVLRNTDQ 830

Query: 468 EVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRD 527
           E KEQ L  HSEKLAI +GL+  P   PIRV+KNLRVC DCH ATK+IS +  REI+ RD
Sbjct: 831 EYKEQALCSHSEKLAIVYGLMHTPYRNPIRVYKNLRVCSDCHTATKFISKVTGREIVARD 890

Query: 528 TTRFHHFKDGTCSCGDYW 545
             RFHHFKDG CSCGDYW
Sbjct: 891 AKRFHHFKDGVCSCGDYW 908



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 123/495 (24%), Positives = 204/495 (41%), Gaps = 75/495 (15%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQR----- 64
           N+++  +AK  G + DA+ +FD + + D+ S+ +M+  +  +     A   F Q      
Sbjct: 170 NALVHMYAKS-GSIDDARVVFDGMVERDIFSWTVMIGGLAQHGRGQEAFSLFLQMERGGC 228

Query: 65  LPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVS----WSAMISGYIECGQLDKA 120
           LP   T       S       +   +++     +   +S     +A+I  Y +CG +D A
Sbjct: 229 LPNLTTYLSILNASAITSTGALEWVKEVHKHAGKAGFISDLRVGNALIHMYAKCGSIDDA 288

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLL 180
             +F     + V++W AMI G       +N    +   +   M   G  P++++  S+L 
Sbjct: 289 RLVFDGMCDRDVISWNAMIGGL-----AQNGCGHEAFTIFLKMQQEGFVPDSTTYLSLLN 343

Query: 181 GCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVT 240
                 + +  K+VH+   +  L  D    +  + MY +CG ++DA  +F ++  ++V T
Sbjct: 344 THVSTGAWEWVKEVHKHAVEVGLVSDLRVGSAFVHMYIRCGSIDDAQLIFDKLAVRNVTT 403

Query: 241 WNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA----------------CN 284
           WNAMI G AQ   G +AL LF +M+ EG  PD+ TFV +L A                  
Sbjct: 404 WNAMIGGVAQQKCGREALSLFLQMRREGFFPDATTFVNILSANVGEEALEWVKEVHSYAI 463

Query: 285 HAGLVDLGI------------------QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLV 326
            AGLVDL +                  Q FD MV           +T M+  L + G   
Sbjct: 464 DAGLVDLRVGNALVHMYAKCGNTMYAKQVFDDMVER-----NVTTWTVMISGLAQHGCGH 518

Query: 327 EAVDLIKKM---PFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLA 383
           EA  L  +M      P    + ++LSAC     L+  +    +  N    +       L 
Sbjct: 519 EAFSLFLQMLREGIVPDATTYVSILSACASTGALEWVKEVHSHAVNAGLVSDLRVGNALV 578

Query: 384 NIYAAMKKWDDVARIRLSMKENNVVKMPGYSW-IEVGTVVHEFRSGDRVHPELVSIHEKL 442
           ++YA     DD  R+   M E +V     YSW + +G +    R  D +           
Sbjct: 579 HMYAKCGSVDDARRVFDDMLERDV-----YSWTVMIGGLAQHGRGLDAL----------- 622

Query: 443 KELEKRMKLAGYVPD 457
            +L  +MKL G+ P+
Sbjct: 623 -DLFVKMKLEGFKPN 636



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 62/191 (32%), Positives = 105/191 (54%), Gaps = 6/191 (3%)

Query: 138 MISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQL 197
           MI GY ++GY     AED +K+   M   G +PN  +  S+L  C    SL+ GK++H  
Sbjct: 1   MIGGYAEYGY-----AEDAMKVYSQMRREGGQPNEITYLSILKACCSPVSLKWGKKIHAH 55

Query: 198 VFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKA 257
           + +S    D    T L++MY KCG ++DA  +F ++  ++V++W  MI G A +G+G++A
Sbjct: 56  IIQSGFQSDVRVETALVNMYVKCGSIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEA 115

Query: 258 LRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVD 317
              F +M+ EG  P+S T+V++L A   AG ++   +     VN  G+A        +V 
Sbjct: 116 FHRFLQMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNA-GLALDLRVGNALVH 174

Query: 318 LLGRAGKLVEA 328
           +  ++G + +A
Sbjct: 175 MYAKSGSIDDA 185



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 53/178 (29%), Positives = 94/178 (52%), Gaps = 5/178 (2%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI 164
           +A+++ Y++CG +D A  +F     ++V++WT MI G   +G       ++       M 
Sbjct: 69  TALVNMYVKCGSIDDAQLIFDKMVERNVISWTVMIGGLAHYGR-----GQEAFHRFLQMQ 123

Query: 165 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 224
             G  PN+ +  S+L   +   +L+  K+VH     + L  D      L+ MY K G ++
Sbjct: 124 REGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSGSID 183

Query: 225 DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA 282
           DA  +F  +  +D+ +W  MI G AQHG+G++A  LF +M+  G  P+  T++++L A
Sbjct: 184 DARVVFDGMVERDIFSWTVMIGGLAQHGRGQEAFSLFLQMERGGCLPNLTTYLSILNA 241


>gi|296082276|emb|CBI21281.3| unnamed protein product [Vitis vinifera]
          Length = 785

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 212/555 (38%), Positives = 334/555 (60%), Gaps = 18/555 (3%)

Query: 3   VKTTVNWN----SVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAA 58
           +KT   WN    + L  F  +   + DA++LFD++P+ D VSYN+++S    +     A 
Sbjct: 237 IKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWDGKHKYA- 295

Query: 59  FDFFQRLPI----KDTASWNTMISGFVQKKNMAKARDL----FLAMPEKNSVSWSAMISG 110
           FD F+ L      +    + TM+S      +    R +     +   +   +  ++++  
Sbjct: 296 FDLFRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQTIVTTADSEILVGNSLVDM 355

Query: 111 YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRP 170
           Y +CG+ ++A  +F     +S V WTAMIS Y++ G+ E     +GL+L   M    +  
Sbjct: 356 YAKCGKFEEAEMIFTNLTHRSAVPWTAMISAYVQKGFYE-----EGLQLFNKMRQASVIA 410

Query: 171 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 230
           + ++ +S+L   + ++SL LGKQ+H  + KS    +  + + L+ +Y KCG ++DA + F
Sbjct: 411 DQATFASLLRASASIASLSLGKQLHSFIIKSGFMSNVFSGSALLDVYAKCGSIKDAVQTF 470

Query: 231 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVD 290
            E+  +++V+WNAMIS YAQ+G+ E  L+ F +M   G++PDS++F+ +L AC+H+GLV+
Sbjct: 471 QEMPDRNIVSWNAMISAYAQNGEAEATLKSFKEMVLSGLQPDSVSFLGVLSACSHSGLVE 530

Query: 291 LGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSA 350
            G+ +F+SM   Y +  + +HY  +VD+L R+G+  EA  L+ +MP  P   ++ ++L+A
Sbjct: 531 EGLWHFNSMTQIYKLDPRREHYASVVDMLCRSGRFNEAEKLMAEMPIDPDEIMWSSVLNA 590

Query: 351 CRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKM 410
           CR+HK  +LA  AA  LFN+     A  YV ++NIYAA  +W++V+++  +M++  V K+
Sbjct: 591 CRIHKNQELARRAADQLFNMEELRDAAPYVNMSNIYAAAGQWENVSKVHKAMRDRGVKKL 650

Query: 411 PGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVK 470
           P YSW+E+    H F + DR HP++  I +K+  L K M+  GY PD   ALH   E+ K
Sbjct: 651 PAYSWVEIKHETHMFSANDRCHPQIEEIRKKIDMLTKTMEELGYKPDTSCALHNEDEKFK 710

Query: 471 EQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTR 530
            + L +HSE+LAIAF LI  P G+PI V KNLR C DCH A K IS I  REI VRD+TR
Sbjct: 711 VESLKYHSERLAIAFALISTPEGSPILVMKNLRACIDCHAAIKVISKIVGREITVRDSTR 770

Query: 531 FHHFKDGTCSCGDYW 545
           FHHF+DG CSCGD+W
Sbjct: 771 FHHFRDGFCSCGDFW 785



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 88/327 (26%), Positives = 146/327 (44%), Gaps = 40/327 (12%)

Query: 36  PDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLA 95
           PD    N  +   L N + +  A   F+++P K+T S N MISG+V+  N+ +AR LF  
Sbjct: 45  PDTSRSNFRVGNFLKNGE-LSQARQLFEKMPHKNTVSTNMMISGYVKSGNLGEARKLFDG 103

Query: 96  MPEKNSVSWSAMISGYIECGQLDKAVELF----KVAPVKSVVAWTAMISG---------- 141
           M E+ +V+W+ +I GY +  Q  +A ELF    +       V +  ++SG          
Sbjct: 104 MVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGTEPDYVTFVTLLSGCNGHEMGNQI 163

Query: 142 ------YMKFGY-----VENSWAEDGLKLLRMMIGLGI---RPNASSLSSVLLGCSH--L 185
                  +K GY     V N+  +   K  R+ +   +    P   S +   + C++  L
Sbjct: 164 TQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLDLACQLFKEMPEIDSFTFAAVLCANIGL 223

Query: 186 SSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMI 245
             + LG+Q+H  V K+    +      L+  Y K   + DA KLF E+  +D V++N +I
Sbjct: 224 DDIVLGQQIHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVII 283

Query: 246 SGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGI 305
           SGYA  GK + A  LF +++          F  +L   ++    ++G Q     ++   I
Sbjct: 284 SGYAWDGKHKYAFDLFRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQ-----IHAQTI 338

Query: 306 AAKPDHY----TCMVDLLGRAGKLVEA 328
               D        +VD+  + GK  EA
Sbjct: 339 VTTADSEILVGNSLVDMYAKCGKFEEA 365



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/144 (33%), Positives = 75/144 (52%), Gaps = 2/144 (1%)

Query: 193 QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHG 252
           Q  QL  K P  K+T +   +IS Y K G+L +A KLF  +  +  VTW  +I GY+Q  
Sbjct: 65  QARQLFEKMP-HKNTVSTNMMISGYVKSGNLGEARKLFDGMVERTAVTWTILIGGYSQLN 123

Query: 253 KGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY 312
           + ++A  LF +M+  G +PD +TFV LL  CN   + +  I    + +   G  ++    
Sbjct: 124 QFKEAFELFVQMQRCGTEPDYVTFVTLLSGCNGHEMGN-QITQVQTQIIKLGYDSRLIVG 182

Query: 313 TCMVDLLGRAGKLVEAVDLIKKMP 336
             +VD   ++ +L  A  L K+MP
Sbjct: 183 NTLVDSYCKSNRLDLACQLFKEMP 206


>gi|357116278|ref|XP_003559909.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Brachypodium distachyon]
          Length = 585

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 211/484 (43%), Positives = 303/484 (62%), Gaps = 6/484 (1%)

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAV 121
           F   P +D    N M++ +V +  +A+AR +F  M  ++ VSW+ MI GY   G +  A 
Sbjct: 108 FDEAPRRDVFLCNVMLAAYVARGEVAEARKVFDGMSGRDLVSWNTMIHGYAVRGDVGMAR 167

Query: 122 ELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLG 181
           E+F     +   +W++MIS Y K        +++ L+L R M   G+ P+  S+ SVL  
Sbjct: 168 EIFDGTRDRDAFSWSSMISAYAK-----GRCSKEALELWREMRVAGVAPDCISMVSVLSA 222

Query: 182 CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTW 241
           CS + +L +G +VH+ V  + +  D    T L+ MY KCGD+E++ K+F  +  KDV+TW
Sbjct: 223 CSAMGALAIGAEVHRFVESNRVEVDMKLGTALVDMYAKCGDIENSLKVFHAMPVKDVLTW 282

Query: 242 NAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN 301
           ++MI G A HG G  AL LF +M  +G++P+ ITF+ +L+AC H GLV+ G +YF SM +
Sbjct: 283 SSMIIGLANHGLGHDALSLFSEMISQGLQPNEITFIGVLIACTHVGLVNDGKKYFSSMSD 342

Query: 302 DYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAE 361
            +G+  + +HY CMVDLLGRAG + EA++LI+ M FKP P I+ TLL ACR+HK +++AE
Sbjct: 343 VHGVVPRMEHYGCMVDLLGRAGHVEEAMELIRSMTFKPDPIIWRTLLGACRIHKNVEIAE 402

Query: 362 FAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTV 421
            A   L  L+P  A G YV L+NIYA    W+ VA +R +++  N+ ++PG S IE    
Sbjct: 403 EAMAKLKVLDPL-ADGHYVLLSNIYAQANSWEGVAEMRKTIRRENIQRVPGRSSIEWENT 461

Query: 422 VHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKL 481
           VHEF SGDR HP +  I++ L+E+  R++ AGY P     L  + E+ K++ L  HSEKL
Sbjct: 462 VHEFVSGDRSHPRIEEIYKMLEEMMDRLRQAGYRPMTSLVLQDIDEQSKKRALAEHSEKL 521

Query: 482 AIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSC 541
           AIAFGL+  P  + +R+ KNLR C DCH A K IS    R++IVRD  RFHHF +G CSC
Sbjct: 522 AIAFGLLVTPARSTLRITKNLRACEDCHSAIKLISLAYDRKLIVRDRNRFHHFSEGQCSC 581

Query: 542 GDYW 545
            DYW
Sbjct: 582 KDYW 585



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 73/303 (24%), Positives = 130/303 (42%), Gaps = 60/303 (19%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
           N +LA +   RG++ +A+++FD +   D+VS+N M+    +   DV  A + F     +D
Sbjct: 120 NVMLAAYV-ARGEVAEARKVFDGMSGRDLVSWNTMIHGYAVRG-DVGMAREIFDGTRDRD 177

Query: 70  TASWNTMISGFVQKKNMAKARDLFLAMP-------------------------------- 97
             SW++MIS + + +   +A +L+  M                                 
Sbjct: 178 AFSWSSMISAYAKGRCSKEALELWREMRVAGVAPDCISMVSVLSACSAMGALAIGAEVHR 237

Query: 98  --EKNSVS-----WSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVEN 150
             E N V       +A++  Y +CG ++ ++++F   PVK V+ W++MI G    G    
Sbjct: 238 FVESNRVEVDMKLGTALVDMYAKCGDIENSLKVFHAMPVKDVLTWSSMIIGLANHGL--- 294

Query: 151 SWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTAL 210
               D L L   MI  G++PN  +   VL+ C+H+  +  GK+     F S    D   +
Sbjct: 295 --GHDALSLFSEMISQGLQPNEITFIGVLIACTHVGLVNDGKK----YFSS--MSDVHGV 346

Query: 211 TP-------LISMYCKCGDLEDACKLFLEIQRK-DVVTWNAMISGYAQHGKGEKALRLFD 262
            P       ++ +  + G +E+A +L   +  K D + W  ++     H   E A     
Sbjct: 347 VPRMEHYGCMVDLLGRAGHVEEAMELIRSMTFKPDPIIWRTLLGACRIHKNVEIAEEAMA 406

Query: 263 KMK 265
           K+K
Sbjct: 407 KLK 409



 Score = 43.9 bits (102), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 49/214 (22%), Positives = 76/214 (35%), Gaps = 66/214 (30%)

Query: 190 LGKQVHQLVFKSPLCK-DTTALTPLISMYCK--CGDLEDACKLFLEIQRKDVVT------ 240
           LG  +H    +S     D    T L+ MY K   G++  A   F E  R+DV        
Sbjct: 65  LGASLHARALRSGFAAADLFVRTALVEMYAKTAAGEIALARAAFDEAPRRDVFLCNVMLA 124

Query: 241 -------------------------WNAMISGYAQHG----------------------- 252
                                    WN MI GYA  G                       
Sbjct: 125 AYVARGEVAEARKVFDGMSGRDLVSWNTMIHGYAVRGDVGMAREIFDGTRDRDAFSWSSM 184

Query: 253 -----KG---EKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYG 304
                KG   ++AL L+ +M+  G+ PD I+ V++L AC+  G + +G +     V    
Sbjct: 185 ISAYAKGRCSKEALELWREMRVAGVAPDCISMVSVLSACSAMGALAIGAE-VHRFVESNR 243

Query: 305 IAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 338
           +       T +VD+  + G +  ++ +   MP K
Sbjct: 244 VEVDMKLGTALVDMYAKCGDIENSLKVFHAMPVK 277


>gi|224073070|ref|XP_002303960.1| predicted protein [Populus trichocarpa]
 gi|222841392|gb|EEE78939.1| predicted protein [Populus trichocarpa]
          Length = 704

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 230/550 (41%), Positives = 328/550 (59%), Gaps = 16/550 (2%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQ 63
           ++ VN ++ L     + G +  A+ +FD +    VVS+N M+    + S D   A   FQ
Sbjct: 163 ESLVNVSTALVDMYSKCGSVSIARVIFDGMDHRTVVSWNSMIDG-YVQSGDAEGAMLIFQ 221

Query: 64  RLPIKDTASWNTMISGFVQK----KNMAKAR---DLFLAMPEKNSVS-WSAMISGYIECG 115
           ++  +     N  + G +       ++ + +    L   +   + VS  +++IS Y +C 
Sbjct: 222 KMLDEGVQPTNVTVMGALHACADLGDLERGKFVHKLVDQLKLDSDVSVMNSLISMYSKCK 281

Query: 116 QLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSL 175
           ++D A ++FK    K++V+W AMI      GY +N    + L     M    I+P++ ++
Sbjct: 282 RVDIAADIFKNLRNKTLVSWNAMI-----LGYAQNGCVNEALNAFCEMQSRNIKPDSFTM 336

Query: 176 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR 235
            SV+   + LS  +  K +H LV +  L K+   +T L+ MY KCG +  A KLF  +  
Sbjct: 337 VSVIPALAELSIPRQAKWIHGLVIRRFLDKNVFVMTALVDMYAKCGAIHTARKLFDMMNA 396

Query: 236 KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQY 295
           + V+TWNAMI GY  HG G+ ++ LF +MK   +KP+ ITF+  L AC+H+GLV+ G+ +
Sbjct: 397 RHVITWNAMIDGYGTHGLGKTSVELFKEMKKGTIKPNDITFLCALSACSHSGLVEEGLCF 456

Query: 296 FDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHK 355
           F+SM  DYGI    DHY  MVDLLGRAG+L +A D I+KMP KP   ++G +L AC++HK
Sbjct: 457 FESMKKDYGIEPTMDHYGAMVDLLGRAGRLNQAWDFIQKMPIKPGITVYGAMLGACKIHK 516

Query: 356 RLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSW 415
            +DL E AA  +F LNP +  G +V LANIYA    W  VA++R  M+++ + K PG S 
Sbjct: 517 NVDLGEKAAFEIFKLNP-DDGGYHVLLANIYATASMWGKVAKVRTIMEKSGLQKTPGCSL 575

Query: 416 IEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLL 475
           +E+G  VH F SG   HP+   I+  L+ L   ++ AGYVPD   ++H V ++VK QLL 
Sbjct: 576 VEIGNEVHSFYSGTTSHPQSKKIYSYLETLVDEIRAAGYVPDTN-SIHDVEDDVKVQLLN 634

Query: 476 FHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFK 535
            HSEKLAIAFGL+    GTPI + KNLRVCGDCH ATKYIS +  REIIVRD  RFH FK
Sbjct: 635 THSEKLAIAFGLLNTSTGTPIHIRKNLRVCGDCHNATKYISLVTGREIIVRDMHRFHLFK 694

Query: 536 DGTCSCGDYW 545
           DG CSCGDYW
Sbjct: 695 DGVCSCGDYW 704



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 82/264 (31%), Positives = 132/264 (50%), Gaps = 44/264 (16%)

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSW--------- 104
           A++ F R+P +D   WNTMISG+ Q      A  L L M E+    +S++          
Sbjct: 84  AYNMFDRMPERDLVCWNTMISGYAQNGFAKVALMLVLRMSEEGHRPDSITIVSILPAVAD 143

Query: 105 --------------------------SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAM 138
                                     +A++  Y +CG +  A  +F     ++VV+W +M
Sbjct: 144 TRLLRIGMAVHGYVLRAGFESLVNVSTALVDMYSKCGSVSIARVIFDGMDHRTVVSWNSM 203

Query: 139 ISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLV 198
           I      GYV++  AE  + + + M+  G++P   ++   L  C+ L  L+ GK VH+LV
Sbjct: 204 ID-----GYVQSGDAEGAMLIFQKMLDEGVQPTNVTVMGALHACADLGDLERGKFVHKLV 258

Query: 199 FKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKAL 258
            +  L  D + +  LISMY KC  ++ A  +F  ++ K +V+WNAMI GYAQ+G   +AL
Sbjct: 259 DQLKLDSDVSVMNSLISMYSKCKRVDIAADIFKNLRNKTLVSWNAMILGYAQNGCVNEAL 318

Query: 259 RLFDKMKDEGMKPDSITFVALLLA 282
             F +M+   +KPDS T V+++ A
Sbjct: 319 NAFCEMQSRNIKPDSFTMVSVIPA 342



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 77/277 (27%), Positives = 137/277 (49%), Gaps = 13/277 (4%)

Query: 100 NSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKL 159
           N  + + +++ Y +C Q++ A  +F   P + +V W  MISGY      +N +A+  L L
Sbjct: 64  NLFAMTGVVNMYAKCRQINDAYNMFDRMPERDLVCWNTMISGY-----AQNGFAKVALML 118

Query: 160 LRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCK 219
           +  M   G RP++ ++ S+L   +    L++G  VH  V ++         T L+ MY K
Sbjct: 119 VLRMSEEGHRPDSITIVSILPAVADTRLLRIGMAVHGYVLRAGFESLVNVSTALVDMYSK 178

Query: 220 CGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVAL 279
           CG +  A  +F  +  + VV+WN+MI GY Q G  E A+ +F KM DEG++P ++T +  
Sbjct: 179 CGSVSIARVIFDGMDHRTVVSWNSMIDGYVQSGDAEGAMLIFQKMLDEGVQPTNVTVMGA 238

Query: 280 LLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKP 339
           L AC   G ++ G ++   +V+   + +       ++ +  +  ++  A D+ K +  K 
Sbjct: 239 LHACADLGDLERG-KFVHKLVDQLKLDSDVSVMNSLISMYSKCKRVDIAADIFKNLRNKT 297

Query: 340 ----QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNP 372
                  I G   + C V++ L+   F  M   N+ P
Sbjct: 298 LVSWNAMILGYAQNGC-VNEALN--AFCEMQSRNIKP 331



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 58/180 (32%), Positives = 96/180 (53%), Gaps = 1/180 (0%)

Query: 146 GYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCK 205
           GY ++S  +  L     M    +RP   + + +L  C   S L+ GK++H  V  S    
Sbjct: 4   GYAKSSSLDSALSFFSRMKHDSVRPVVYNFTYLLKLCGDNSDLKRGKEIHGSVITSGFSW 63

Query: 206 DTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMK 265
           +  A+T +++MY KC  + DA  +F  +  +D+V WN MISGYAQ+G  + AL L  +M 
Sbjct: 64  NLFAMTGVVNMYAKCRQINDAYNMFDRMPERDLVCWNTMISGYAQNGFAKVALMLVLRMS 123

Query: 266 DEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKL 325
           +EG +PDSIT V++L A     L+ +G+     ++   G  +  +  T +VD+  + G +
Sbjct: 124 EEGHRPDSITIVSILPAVADTRLLRIGMAVHGYVLR-AGFESLVNVSTALVDMYSKCGSV 182


>gi|449523792|ref|XP_004168907.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 229/546 (41%), Positives = 327/546 (59%), Gaps = 14/546 (2%)

Query: 7   VNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSD--DVVAAFDFFQR 64
           VN ++ LA    + G ++ A+ +FD + Q  VVS+N M+   + N +    +A F+    
Sbjct: 283 VNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLE 342

Query: 65  LPIKDTA-SWNTMISGFVQKKNMAKARDLFLAMPEKNSVS----WSAMISGYIECGQLDK 119
             I  T  +    +       ++ + + +   + + N  S     +++IS Y +C ++D 
Sbjct: 343 EGIDPTGVTIMEALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDI 402

Query: 120 AVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVL 179
           A ++F     ++ V+W AMI      GY +N    + L     M  LG++P++ ++ SV+
Sbjct: 403 ASDIFNNLNGRTHVSWNAMI-----LGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVI 457

Query: 180 LGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVV 239
              + LS  +  K +H L+ +S L K+    T L+ MY KCG +  A KLF  I  + V+
Sbjct: 458 PALAELSVTRHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFDMISDRHVI 517

Query: 240 TWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSM 299
           TWNAMI GY  HG G  AL LFDKMK   ++P+ IT+++++ AC+H+GLVD G+++F SM
Sbjct: 518 TWNAMIDGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVISACSHSGLVDEGLRHFKSM 577

Query: 300 VNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDL 359
             DYG+    DHY  MVDLLGRAG++ EA D I+ MP  P   ++G +L AC++HK +++
Sbjct: 578 KQDYGLEPSMDHYGAMVDLLGRAGRIKEAWDFIENMPISPGITVYGAMLGACKIHKNIEV 637

Query: 360 AEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVG 419
            E AA  LF LNP +  G +V LANIYA+  KW  VA +R +M++  + K PG S +E+ 
Sbjct: 638 GEKAAKKLFELNP-DEGGYHVLLANIYASTSKWSKVAEVRKTMEKKGLKKTPGCSVVELR 696

Query: 420 TVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSE 479
             VH F SG   HP+   I+  L+EL   +K AGYVPD    L  V ++V+EQLL  HSE
Sbjct: 697 NEVHSFYSGSTTHPQSKRIYAFLEELVYEIKAAGYVPDTNLILD-VEDDVQEQLLNSHSE 755

Query: 480 KLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTC 539
           KLAIAFGL+    GT I V KNLRVCGDCH ATKYIS +  REIIVRD  RFHHFK+G C
Sbjct: 756 KLAIAFGLLNTSPGTTIHVRKNLRVCGDCHNATKYISLVTGREIIVRDMQRFHHFKNGIC 815

Query: 540 SCGDYW 545
           SCGDYW
Sbjct: 816 SCGDYW 821



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 77/292 (26%), Positives = 146/292 (50%), Gaps = 14/292 (4%)

Query: 9   WNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK 68
           + + L     + G + +A  +F+ I       Y+ ML     NS  +  A  F  R+   
Sbjct: 83  FQTKLVSLFSKYGSINEAARVFEPIDDKLDALYHTMLKGYAKNSS-LETALAFLCRMRYD 141

Query: 69  DTA----SWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISGYIECGQLDKA 120
           D      ++  ++       ++ + +++   +       N  + + +++ Y +C Q+D A
Sbjct: 142 DVKPVVYNFTYLLKVCGDNADLKRGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDA 201

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLL 180
            ++F   P + +V+W  +I+G+      +N +A+  L+L+  M   G RP++ +L +VL 
Sbjct: 202 YKMFDRMPERDLVSWNTIIAGF-----SQNGFAKKALELVLRMQDEGQRPDSITLVTVLP 256

Query: 181 GCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVT 240
             + +  L +GK +H    ++   K     T L  MY KCG +E A  +F  + +K VV+
Sbjct: 257 AAADVGLLMVGKSIHGYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMDQKTVVS 316

Query: 241 WNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 292
           WN+M+ GY Q+G+ EKA+ +F+KM +EG+ P  +T +  L AC   G ++ G
Sbjct: 317 WNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGDLERG 368



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 68/228 (29%), Positives = 120/228 (52%), Gaps = 7/228 (3%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI 164
           + ++S + + G +++A  +F+    K    +  M+ GY K     NS  E  L  L  M 
Sbjct: 85  TKLVSLFSKYGSINEAARVFEPIDDKLDALYHTMLKGYAK-----NSSLETALAFLCRMR 139

Query: 165 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 224
              ++P   + + +L  C   + L+ GK++H  +  +    +  A+T +++MY KC  ++
Sbjct: 140 YDDVKPVVYNFTYLLKVCGDNADLKRGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQID 199

Query: 225 DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 284
           DA K+F  +  +D+V+WN +I+G++Q+G  +KAL L  +M+DEG +PDSIT V +L A  
Sbjct: 200 DAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAA 259

Query: 285 HAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLI 332
             GL+ +G       +   G A   +  T + D+  + G  VE   LI
Sbjct: 260 DVGLLMVGKSIHGYAIR-AGFAKLVNISTALADMYSKCGS-VETARLI 305



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 38/148 (25%), Positives = 72/148 (48%), Gaps = 4/148 (2%)

Query: 192 KQVHQ---LVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGY 248
           K++HQ   LV K+ L  +    T L+S++ K G + +A ++F  I  K    ++ M+ GY
Sbjct: 63  KELHQIIPLVIKNGLYNEHLFQTKLVSLFSKYGSINEAARVFEPIDDKLDALYHTMLKGY 122

Query: 249 AQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK 308
           A++   E AL    +M+ + +KP    F  LL  C     +  G +    ++ +   AA 
Sbjct: 123 AKNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGKEIHGQLITN-SFAAN 181

Query: 309 PDHYTCMVDLLGRAGKLVEAVDLIKKMP 336
               T +V++  +  ++ +A  +  +MP
Sbjct: 182 VFAMTGVVNMYAKCRQIDDAYKMFDRMP 209


>gi|115466812|ref|NP_001057005.1| Os06g0185800 [Oryza sativa Japonica Group]
 gi|55773756|dbj|BAD72439.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113595045|dbj|BAF18919.1| Os06g0185800 [Oryza sativa Japonica Group]
 gi|125596288|gb|EAZ36068.1| hypothetical protein OsJ_20378 [Oryza sativa Japonica Group]
          Length = 787

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 223/545 (40%), Positives = 325/545 (59%), Gaps = 38/545 (6%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRL--------------- 65
           G ++ A+ LFD + +PD+V+YN ++S   +N   V ++ + F  L               
Sbjct: 261 GDVESARCLFDMMEKPDLVAYNALISGYSVNGM-VGSSVNLFTELMTLGLWPNSSTLVAL 319

Query: 66  -PIKDTASWNTM---ISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAV 121
            P+      + +   + GFV K                NS   +A+ + +     ++ A 
Sbjct: 320 IPVHSPFGHDLLAQCLHGFVLKSGFTA-----------NSPVSTAITTLHCRLNDMESAR 368

Query: 122 ELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLG 181
           + F   P K++ +W AMISGY      +N   E  + L   M+ L +RPN  ++SS L  
Sbjct: 369 KAFDTMPEKTMESWNAMISGY-----AQNGLTEMAVALFEQMVKLNVRPNPITISSTLSA 423

Query: 182 CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTW 241
           C+ L +L LGK +H+++ +  L  +   +T LI MY KCG + +A ++F  +  K+VV+W
Sbjct: 424 CAQLGALSLGKWLHRIITEEDLEPNVYVMTALIDMYAKCGSISEARRIFNTMDNKNVVSW 483

Query: 242 NAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN 301
           NAMI+GY  HG+G +AL+L+  M D  + P S TF+++L AC+H GLV+ G + F SM +
Sbjct: 484 NAMIAGYGLHGQGAEALKLYKDMLDAHLLPTSATFLSVLYACSHGGLVEEGWKVFRSMTD 543

Query: 302 DYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKP-QPAIFGTLLSACRVHKRLDLA 360
           DY I    +H TCMVDLLGRAG+L EA +LI + P     P ++G LL AC VHK  DLA
Sbjct: 544 DYAINPGIEHCTCMVDLLGRAGQLKEAFELISEFPKSAVGPGVWGALLGACMVHKDSDLA 603

Query: 361 EFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGT 420
           + A+  LF L+P N+ G YV L+N++ + K++ + A +R   K   +VK PGY+ IE+G 
Sbjct: 604 KLASQKLFELDPENS-GYYVLLSNLHTSKKQYSEAAVVRQEAKSRKLVKTPGYTLIEIGN 662

Query: 421 VVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEK 480
             H F +GDR HP+  +I+  L++L  +M  AGY P+ E AL+ V EE KE ++  HSEK
Sbjct: 663 KPHVFMAGDRAHPQSEAIYSYLEKLTAKMIEAGYRPETEAALYDVEEEEKEHMVKVHSEK 722

Query: 481 LAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCS 540
           LAIAFGL+    GT IR+ KNLRVC DCH ATK+IS + +R I+VRD +RFHHF+DG CS
Sbjct: 723 LAIAFGLLSTEPGTEIRIIKNLRVCLDCHNATKFISKVTQRLIVVRDASRFHHFRDGVCS 782

Query: 541 CGDYW 545
           CGDYW
Sbjct: 783 CGDYW 787



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 94/344 (27%), Positives = 167/344 (48%), Gaps = 40/344 (11%)

Query: 11  SVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAF----------- 59
           S LA       ++  A+++FD +P PD V +N +L+   L+  + V +F           
Sbjct: 153 SALAKLYFVLSRVDHARKVFDTVPSPDTVLWNTLLAG--LSGSEAVESFARMVCDGSVRP 210

Query: 60  ---DFFQRLPIKDTASWNTM---ISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE 113
                   LP     +  TM   +  F +K  +A+   +            + +IS Y +
Sbjct: 211 DATTLASVLPAAAEVADVTMGRCVHSFAEKCGLAEHEHVL-----------TGLISLYSK 259

Query: 114 CGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNAS 173
           CG ++ A  LF +     +VA+ A+ISGY   G V +S     + L   ++ LG+ PN+S
Sbjct: 260 CGDVESARCLFDMMEKPDLVAYNALISGYSVNGMVGSS-----VNLFTELMTLGLWPNSS 314

Query: 174 SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI 233
           +L +++   S      L + +H  V KS    ++   T + +++C+  D+E A K F  +
Sbjct: 315 TLVALIPVHSPFGHDLLAQCLHGFVLKSGFTANSPVSTAITTLHCRLNDMESARKAFDTM 374

Query: 234 QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGI 293
             K + +WNAMISGYAQ+G  E A+ LF++M    ++P+ IT  + L AC   G + LG 
Sbjct: 375 PEKTMESWNAMISGYAQNGLTEMAVALFEQMVKLNVRPNPITISSTLSACAQLGALSLG- 433

Query: 294 QYFDSMVNDYGIAAKPDHY--TCMVDLLGRAGKLVEAVDLIKKM 335
           ++   ++ +  +  +P+ Y  T ++D+  + G + EA  +   M
Sbjct: 434 KWLHRIITEEDL--EPNVYVMTALIDMYAKCGSISEARRIFNTM 475



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 71/301 (23%), Positives = 128/301 (42%), Gaps = 71/301 (23%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKI------PQPDVVSYNIMLSCILLNSDD 54
           M  KT  +WN++++G+A Q G  + A  LF+++      P P  +S + + +C  L +  
Sbjct: 374 MPEKTMESWNAMISGYA-QNGLTEMAVALFEQMVKLNVRPNPITIS-STLSACAQLGA-- 429

Query: 55  VVAAFDFFQRLPIKDTASWN-----TMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMIS 109
            ++   +  R+  ++    N      +I  + +  ++++AR +F  M  KN VSW+AMI+
Sbjct: 430 -LSLGKWLHRIITEEDLEPNVYVMTALIDMYAKCGSISEARRIFNTMDNKNVVSWNAMIA 488

Query: 110 GYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIR 169
           GY   GQ                                      + LKL + M+   + 
Sbjct: 489 GYGLHGQ------------------------------------GAEALKLYKDMLDAHLL 512

Query: 170 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKC--------G 221
           P +++  SVL  CSH   ++ G +    VF+S    D  A+ P I  +C C        G
Sbjct: 513 PTSATFLSVLYACSHGGLVEEGWK----VFRS--MTDDYAINPGIE-HCTCMVDLLGRAG 565

Query: 222 DLEDACKLFLEIQRKDV--VTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVAL 279
            L++A +L  E  +  V    W A++     H   + A     K+ +  + P++  +  L
Sbjct: 566 QLKEAFELISEFPKSAVGPGVWGALLGACMVHKDSDLAKLASQKLFE--LDPENSGYYVL 623

Query: 280 L 280
           L
Sbjct: 624 L 624



 Score = 46.6 bits (109), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 75/165 (45%), Gaps = 11/165 (6%)

Query: 206 DTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMK 265
           DT   + L  +Y     ++ A K+F  +   D V WN +++G +    G +A+  F +M 
Sbjct: 148 DTFVASALAKLYFVLSRVDHARKVFDTVPSPDTVLWNTLLAGLS----GSEAVESFARMV 203

Query: 266 DEG-MKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGK 324
            +G ++PD+ T  ++L A      V +G +   S     G+A      T ++ L  + G 
Sbjct: 204 CDGSVRPDATTLASVLPAAAEVADVTMG-RCVHSFAEKCGLAEHEHVLTGLISLYSKCGD 262

Query: 325 LVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFN 369
            VE+   +  M  KP    +  L+S   V+  +     +++NLF 
Sbjct: 263 -VESARCLFDMMEKPDLVAYNALISGYSVNGMVG----SSVNLFT 302


>gi|302816499|ref|XP_002989928.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
 gi|300142239|gb|EFJ08941.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
          Length = 818

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 220/570 (38%), Positives = 332/570 (58%), Gaps = 52/570 (9%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK------------ 68
           G   +A+E+FDK+ + D+VS+N+M+ C + N D    A + +Q+L ++            
Sbjct: 256 GSSHEAREVFDKMKKRDMVSWNVMIGCYVQNGD-FHEALELYQKLDMEGFKRTKATFVSI 314

Query: 69  ---------------------------DTASWNTMISGFVQKKNMAKARDLFLAMPEKNS 101
                                      + A    +++ + +  ++ +AR +F AM  +++
Sbjct: 315 LGACSSVKALAQGRLVHSHILERGLDSEVAVATALVNMYAKCGSLEEARKVFNAMKNRDA 374

Query: 102 VSWSAMISGYIECG---QLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLK 158
           V+WS +I  Y   G      KA ++F     +  + W AMI+ Y     V+N  A   +K
Sbjct: 375 VAWSTLIGAYASNGYGKDARKARKVFDRLGSRDTICWNAMITTY-----VQNGCAVAAMK 429

Query: 159 LLRMMIGL-GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMY 217
           + R M G  G++P+A +  +VL  C+ L  L   K +H  + +S L  +      LI+MY
Sbjct: 430 IFREMTGAAGLKPDAVTFIAVLEACASLGRLSEVKALHAQISESELESNVVVTNTLINMY 489

Query: 218 CKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFV 277
            +CG LE+A +LF   + K VV+W AM++ ++Q+G+  +AL LF +M  EG+KPD +T+ 
Sbjct: 490 ARCGSLEEAERLFAAAKEKTVVSWTAMVAAFSQYGRYAEALDLFQEMDLEGVKPDDVTYT 549

Query: 278 ALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPF 337
           ++L  C H G ++ G +YF  M   +G+A   DH+  MVDLLGR+G+L +A +L++ MPF
Sbjct: 550 SILFVCTHGGSLEQGWRYFTDMAELHGLAPTADHFAAMVDLLGRSGRLFDAKELLESMPF 609

Query: 338 KPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVAR 397
           +P P  + T L+ACR+H +L+L E AA  ++ L+P++ A  Y+ ++NIYAA   W+ VA 
Sbjct: 610 EPDPVAWMTFLTACRIHGKLELGEAAAERVYELDPSSTAP-YIAMSNIYAAHGMWEKVAS 668

Query: 398 IRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPD 457
           +R  M+E  + K+PG S+IEV   +HEF SG + HP    I E+L  L   M+ AGYVPD
Sbjct: 669 VRKKMEERGLKKLPGLSFIEVDGKLHEFSSGGKYHPRTDEICEELTRLHGLMRAAGYVPD 728

Query: 458 LEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKV-PLGTPIRVFKNLRVCGDCHRATKYIS 516
            +  LH V E  KE +LL+HSEK+AIAFGL+     G PIRV KNLRVC DCH ATK+I+
Sbjct: 729 TKAVLHDVSEGEKETMLLYHSEKMAIAFGLVSSRGSGEPIRVVKNLRVCSDCHTATKFIA 788

Query: 517 AIEKREIIVRDTTRFHHF-KDGTCSCGDYW 545
            I  R+II+RD  RFH F  DG CSCGDYW
Sbjct: 789 RIAGRDIILRDCNRFHRFSSDGKCSCGDYW 818



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 88/354 (24%), Positives = 178/354 (50%), Gaps = 17/354 (4%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIP--QPDVVSYNIMLSCILLNSDDVVAAFDF 61
           + T+  N++++ + K    L DA+ +F+ +   Q +VVS+N M++    N      A   
Sbjct: 40  RDTMVGNALISMYGKC-DSLVDARSVFESMDWRQRNVVSWNAMIAAYAQNGHST-EALVL 97

Query: 62  FQRLPIKDTASWN-TMISGFVQKKNMAKARDL----FLAMPEKNSVSWSAMISGYIECGQ 116
           + R+ ++   + + T +S      ++A+ R++    F +  +      +A+++ Y   G 
Sbjct: 98  YWRMNLQGLGTDHVTFVSVLGACSSLAQGREIHNRVFYSGLDSFQSLANALVTMYARFGS 157

Query: 117 LDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLS 176
           +  A  +F+    +   +W A+I  + + G     W+   L++ + M    ++PN+++  
Sbjct: 158 VGDAKRMFQSLQTRDETSWNAVILAHSQSG----DWS-GALRIFKEM-KCDMKPNSTTYI 211

Query: 177 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK 236
           +V+ G S    L  G+++H  +  +    D    T LI+MY KCG   +A ++F +++++
Sbjct: 212 NVISGFSTPEVLPEGRKIHAEIVANGFDSDLVVATALINMYGKCGSSHEAREVFDKMKKR 271

Query: 237 DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYF 296
           D+V+WN MI  Y Q+G   +AL L+ K+  EG K    TFV++L AC+    +  G +  
Sbjct: 272 DMVSWNVMIGCYVQNGDFHEALELYQKLDMEGFKRTKATFVSILGACSSVKALAQG-RLV 330

Query: 297 DSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSA 350
            S + + G+ ++    T +V++  + G L EA  +   M  +   A + TL+ A
Sbjct: 331 HSHILERGLDSEVAVATALVNMYAKCGSLEEARKVFNAMKNRDAVA-WSTLIGA 383



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/191 (28%), Positives = 98/191 (51%), Gaps = 22/191 (11%)

Query: 169 RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK 228
           +P+  +  +VL  CS    +  G+ +H+ +  S   +DT     LISMY KC  L DA  
Sbjct: 4   QPDNVTFLTVLCSCSSCGDVAEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARS 63

Query: 229 LF--LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN-- 284
           +F  ++ ++++VV+WNAMI+ YAQ+G   +AL L+ +M  +G+  D +TFV++L AC+  
Sbjct: 64  VFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACSSL 123

Query: 285 ------HAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 338
                 H  +   G+  F S+ N             +V +  R G + +A  + + +  +
Sbjct: 124 AQGREIHNRVFYSGLDSFQSLAN------------ALVTMYARFGSVGDAKRMFQSLQTR 171

Query: 339 PQPAIFGTLLS 349
            + +    +L+
Sbjct: 172 DETSWNAVILA 182


>gi|356502620|ref|XP_003520116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Glycine max]
          Length = 785

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 233/587 (39%), Positives = 333/587 (56%), Gaps = 49/587 (8%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVA--A 58
           M +K T  WN++++    Q  +   A  LFD++  PD+VS+N +++       D+ A   
Sbjct: 206 MRLKDTSTWNTMIS-MHMQFCQFDLALALFDQMTDPDIVSWNSIITGYCHQGYDIRALET 264

Query: 59  FDFFQRL----PIKDT---------------------------------ASWNTMISGFV 81
           F F  +     P K T                                 A  N +IS + 
Sbjct: 265 FSFMLKSSSLKPDKFTLGSVLSACANRESLKLGKQIHAHIVRADVDIAGAVGNALISMYA 324

Query: 82  QKKNMAKARDL--FLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMI 139
           +   +  A  +      P  N +++++++ GY + G +D A  +F     + VVAWTAMI
Sbjct: 325 KSGAVEVAHRIVEITGTPSLNVIAFTSLLDGYFKIGDIDPARAIFDSLKHRDVVAWTAMI 384

Query: 140 SGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVF 199
                 GY +N    D L L R+MI  G +PN  +L++VL   S L+SL  GKQ+H +  
Sbjct: 385 -----VGYAQNGLISDALVLFRLMIREGPKPNNYTLAAVLSVISSLASLDHGKQLHAVAI 439

Query: 200 KSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI-QRKDVVTWNAMISGYAQHGKGEKAL 258
           +       +    LI+MY + G ++DA K+F  I   +D +TW +MI   AQHG G +A+
Sbjct: 440 RLEEVSSVSVGNALITMYSRSGSIKDARKIFNHICSYRDTLTWTSMILSLAQHGLGNEAI 499

Query: 259 RLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDL 318
            LF+KM    +KPD IT+V +L AC H GLV+ G  YF+ M N + I     HY CM+DL
Sbjct: 500 ELFEKMLRINLKPDHITYVGVLSACTHVGLVEQGKSYFNLMKNVHNIEPTSSHYACMIDL 559

Query: 319 LGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGC 378
           LGRAG L EA + I+ MP +P    +G+LLS+CRVHK +DLA+ AA  L  ++P N+ G 
Sbjct: 560 LGRAGLLEEAYNFIRNMPIEPDVVAWGSLLSSCRVHKYVDLAKVAAEKLLLIDPNNS-GA 618

Query: 379 YVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSI 438
           Y+ LAN  +A  KW+D A++R SMK+  V K  G+SW+++   VH F   D +HP+  +I
Sbjct: 619 YLALANTLSACGKWEDAAKVRKSMKDKAVKKEQGFSWVQIKNKVHIFGVEDALHPQRDAI 678

Query: 439 HEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRV 498
           +  + ++ K +K  G++PD    LH + +EVKEQ+L  HSEKLAIAF LI  P  T +R+
Sbjct: 679 YCMISKIWKEIKKMGFIPDTNSVLHDLEQEVKEQILRHHSEKLAIAFALINTPKHTTVRI 738

Query: 499 FKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
            KNLRVC DCH A +YIS + +REIIVRD TRFHHFKDG+CSC DYW
Sbjct: 739 MKNLRVCNDCHSAIRYISLLVEREIIVRDATRFHHFKDGSCSCQDYW 785



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 74/240 (30%), Positives = 121/240 (50%), Gaps = 11/240 (4%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVV 133
           N +++ +V+  + + A  LF  MP K + SW+ ++S + + G LD A  +F   P    V
Sbjct: 52  NNLLNLYVKTGSSSDAHRLFDEMPLKTTFSWNTILSAHAKAGNLDSARRVFDEIPQPDSV 111

Query: 134 AWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ 193
           +WT MI GY   G  +++     +     M+  GI P   + ++VL  C+   +L +GK+
Sbjct: 112 SWTTMIVGYNHLGLFKSA-----VHAFLRMVSSGISPTQFTFTNVLASCAAAQALDVGKK 166

Query: 194 VHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGK 253
           VH  V K            L++MY KCGD   A  +F  ++ KD  TWN MIS + Q  +
Sbjct: 167 VHSFVVKLGQSGVVPVANSLLNMYAKCGDSVMAKVVFDRMRLKDTSTWNTMISMHMQFCQ 226

Query: 254 GEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYT 313
            + AL LFD+M D    PD +++ +++    H G     ++ F  M+    +  KPD +T
Sbjct: 227 FDLALALFDQMTD----PDIVSWNSIITGYCHQGYDIRALETFSFMLKSSSL--KPDKFT 280


>gi|347954518|gb|AEP33759.1| organelle transcript processing 82, partial [Brassica oleracea]
          Length = 691

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 234/578 (40%), Positives = 328/578 (56%), Gaps = 50/578 (8%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
            S+++ +A+  G+L+DA+++FD   Q DVVS   +++    +  DV +A   F  +  +D
Sbjct: 122 TSLISMYARN-GRLEDARKVFDXSSQRDVVSCTALITG-YASRGDVRSARKVFDXITERD 179

Query: 70  TASWNTMISGFVQKKNMAKARDLFLAMPEKN---------SVSWSAMISGYIE------- 113
             SWN MI+G+V+     +A +LF  M   N         SV  +   SG IE       
Sbjct: 180 VVSWNAMITGYVENCGYEEALELFKEMMRTNVRPDEGTLVSVLSACAQSGSIELGREIHT 239

Query: 114 ------------------------CGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVE 149
                                   CG ++ A  LF+    K VV+W  +I GY      +
Sbjct: 240 LVDDHHGFGSSLKIVNAFIGLYSKCGDVEIASGLFEGLSCKDVVSWNTLIGGYTHMNLYK 299

Query: 150 NSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK--SPLCKDT 207
                + L L + M+  G  PN  ++ SVL  C+HL ++ +G+ +H  + K    +   +
Sbjct: 300 -----EALLLFQEMLRSGESPNDVTMLSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNGS 354

Query: 208 TALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE 267
              T LI MY KCGD+E A ++F  +  K + +WNAMI G+A HG+   A  LF +M+  
Sbjct: 355 ALRTSLIDMYAKCGDIEAAHQVFNSMMHKSLSSWNAMIFGFAMHGRANAAFDLFSRMRKN 414

Query: 268 GMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVE 327
           G++PD IT V LL AC+H+GL+DLG   F S+  DY I  K +HY CM+DLLG AG   E
Sbjct: 415 GIEPDDITLVGLLSACSHSGLLDLGRHIFKSVTQDYNITPKLEHYGCMIDLLGHAGLFKE 474

Query: 328 AVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYA 387
           A ++I  MP +P   I+ +LL AC++H  L+LAE  A  L  + P N+ G YV L+NIYA
Sbjct: 475 AEEIIHMMPMEPDGVIWCSLLKACKMHGNLELAESFAQKLMEIEPENS-GSYVLLSNIYA 533

Query: 388 AMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEK 447
              +W+DVARIR  +    + K+PG S IE+ +VVHEF  GD++HP+   I+  L+E++ 
Sbjct: 534 TAGRWEDVARIREVLNGKGMKKVPGCSSIEIDSVVHEFIIGDKLHPQSREIYRMLEEMDV 593

Query: 448 RMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGD 507
            ++ AG+VPD    L  + EE KE  L  HSEKLAIAFGLI    GT + V KNLRVC +
Sbjct: 594 LLEEAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTVVKNLRVCRN 653

Query: 508 CHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           CH ATK IS I KREI+ RD TRFHHF+DG CSC DYW
Sbjct: 654 CHEATKLISKIYKREIVARDRTRFHHFRDGVCSCCDYW 691



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 98/316 (31%), Positives = 158/316 (50%), Gaps = 26/316 (8%)

Query: 69  DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAP 128
           D  +  ++IS + +   +  AR +F    +++ VS +A+I+GY   G +  A ++F    
Sbjct: 117 DRYAHTSLISMYARNGRLEDARKVFDXSSQRDVVSCTALITGYASRGDVRSARKVFDXIT 176

Query: 129 VKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSL 188
            + VV+W AMI+     GYVEN   E+ L+L + M+   +RP+  +L SVL  C+   S+
Sbjct: 177 ERDVVSWNAMIT-----GYVENCGYEEALELFKEMMRTNVRPDEGTLVSVLSACAQSGSI 231

Query: 189 QLGKQVHQLV-----FKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNA 243
           +LG+++H LV     F S L      +   I +Y KCGD+E A  LF  +  KDVV+WN 
Sbjct: 232 ELGREIHTLVDDHHGFGSSL----KIVNAFIGLYSKCGDVEIASGLFEGLSCKDVVSWNT 287

Query: 244 MISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGI---QYFDSMV 300
           +I GY      ++AL LF +M   G  P+ +T +++L AC H G +D+G     Y D  +
Sbjct: 288 LIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAHLGAIDIGRWIHVYIDKRL 347

Query: 301 NDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKP----QPAIFGTLLSACRVHKR 356
              G+       T ++D+  + G +  A  +   M  K        IFG  +   R +  
Sbjct: 348 K--GVTNGSALRTSLIDMYAKCGDIEAAHQVFNSMMHKSLSSWNAMIFGFAMHG-RANAA 404

Query: 357 LDLAEFAAMNLFNLNP 372
            DL  F+ M    + P
Sbjct: 405 FDL--FSRMRKNGIEP 418



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 70/253 (27%), Positives = 113/253 (44%), Gaps = 36/253 (14%)

Query: 117 LDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLS 176
           L  AV +F+     +++ W  M+ G        +S     L++   M+  G  PNA +  
Sbjct: 33  LPYAVSVFETXQEPNLLIWNTMLRGL-----ASSSDLVSPLEMYVRMVSXGHVPNAYTFP 87

Query: 177 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA---------- 226
            +L  C+   + + G+Q+H  V K     D  A T LISMY + G LEDA          
Sbjct: 88  FLLKSCAKSKTFEEGRQIHAQVMKLGCELDRYAHTSLISMYARNGRLEDARKVFDXSSQR 147

Query: 227 ----C-----------------KLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMK 265
               C                 K+F  I  +DVV+WNAMI+GY ++   E+AL LF +M 
Sbjct: 148 DVVSCTALITGYASRGDVRSARKVFDXITERDVVSWNAMITGYVENCGYEEALELFKEMM 207

Query: 266 DEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKL 325
              ++PD  T V++L AC  +G ++LG +    + + +G  +        + L  + G +
Sbjct: 208 RTNVRPDEGTLVSVLSACAQSGSIELGREIHTLVDDHHGFGSSLKIVNAFIGLYSKCGDV 267

Query: 326 VEAVDLIKKMPFK 338
             A  L + +  K
Sbjct: 268 EIASGLFEGLSCK 280


>gi|356503240|ref|XP_003520419.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 801

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 216/532 (40%), Positives = 321/532 (60%), Gaps = 15/532 (2%)

Query: 22  KLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFV 81
            L  A+ +FD + +  ++S+  M++   ++ +++      F ++  +        +   V
Sbjct: 277 NLAYARRVFDGLSKASIISWTAMIAA-YIHCNNLNEGVRLFVKMLGEGMFPNEITMLSLV 335

Query: 82  QKKNMAKARDL---FLAMPEKNSVSWS-----AMISGYIECGQLDKAVELFKVAPVKSVV 133
           ++   A A +L     A   +N  + S     A I  Y +CG +  A  +F     K ++
Sbjct: 336 KECGTAGALELGKLLHAFTLRNGFTLSLVLATAFIDMYGKCGDVRSARSVFDSFKSKDLM 395

Query: 134 AWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ 193
            W+AMIS Y      +N+  ++   +   M G GIRPN  ++ S+L+ C+   SL++GK 
Sbjct: 396 MWSAMISSY-----AQNNCIDEAFDIFVHMTGCGIRPNERTMVSLLMICAKAGSLEMGKW 450

Query: 194 VHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGK 253
           +H  + K  +  D    T  + MY  CGD++ A +LF E   +D+  WNAMISG+A HG 
Sbjct: 451 IHSYIDKQGIKGDMILKTSFVDMYANCGDIDTAHRLFAEATDRDISMWNAMISGFAMHGH 510

Query: 254 GEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYT 313
           GE AL LF++M+  G+ P+ ITF+  L AC+H+GL+  G + F  MV+++G   K +HY 
Sbjct: 511 GEAALELFEEMEALGVTPNDITFIGALHACSHSGLLQEGKRLFHKMVHEFGFTPKVEHYG 570

Query: 314 CMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPA 373
           CMVDLLGRAG L EA +LIK MP +P  A+FG+ L+AC++HK + L E+AA    +L P 
Sbjct: 571 CMVDLLGRAGLLDEAHELIKSMPMRPNIAVFGSFLAACKLHKNIKLGEWAAKQFLSLEP- 629

Query: 374 NAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHP 433
           + +G  V ++NIYA+  +W DVA IR +MK+  +VK PG S IEV  ++HEF  GDR HP
Sbjct: 630 HKSGYNVLMSNIYASANRWGDVAYIRRAMKDEGIVKEPGVSSIEVNGLLHEFIMGDREHP 689

Query: 434 ELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLG 493
           +   ++E + E+ ++++ AGY PD+   LH + +E K   L +HSEKLA+A+GLI    G
Sbjct: 690 DAKKVYEMIDEMREKLEDAGYTPDVSCVLHNIDKEKKVSALNYHSEKLAMAYGLISTAPG 749

Query: 494 TPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
            PIR+ KNLRVC DCH ATK +S I  REIIVRD  RFHHFK+G+CSC DYW
Sbjct: 750 VPIRIVKNLRVCDDCHNATKLLSKIYGREIIVRDRNRFHHFKEGSCSCCDYW 801



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 91/317 (28%), Positives = 155/317 (48%), Gaps = 15/317 (4%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIML-----SCILLNSDDVVAAFDFFQRLPIKDTASWNT 75
           G L  A+ LFDKI   DVVS++ M+     S +L  + D++      +  P +      T
Sbjct: 173 GSLALARLLFDKIENKDVVSWSTMIRSYDRSGLLDEALDLLRDMHVMRVKPSEIGMISIT 232

Query: 76  MISGFVQKKNMAKARDLFLAMPEKNSVSW----SAMISGYIECGQLDKAVELFKVAPVKS 131
            +   +    + KA   ++    K   S     +A+I  Y++C  L  A  +F      S
Sbjct: 233 HVLAELADLKLGKAMHAYVMRNGKCGKSGVPLCTALIDMYVKCENLAYARRVFDGLSKAS 292

Query: 132 VVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLG 191
           +++WTAMI+ Y+    +      +G++L   M+G G+ PN  ++ S++  C    +L+LG
Sbjct: 293 IISWTAMIAAYIHCNNLN-----EGVRLFVKMLGEGMFPNEITMLSLVKECGTAGALELG 347

Query: 192 KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQH 251
           K +H    ++         T  I MY KCGD+  A  +F   + KD++ W+AMIS YAQ+
Sbjct: 348 KLLHAFTLRNGFTLSLVLATAFIDMYGKCGDVRSARSVFDSFKSKDLMMWSAMISSYAQN 407

Query: 252 GKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDH 311
              ++A  +F  M   G++P+  T V+LL+ C  AG +++G ++  S ++  GI      
Sbjct: 408 NCIDEAFDIFVHMTGCGIRPNERTMVSLLMICAKAGSLEMG-KWIHSYIDKQGIKGDMIL 466

Query: 312 YTCMVDLLGRAGKLVEA 328
            T  VD+    G +  A
Sbjct: 467 KTSFVDMYANCGDIDTA 483



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 73/262 (27%), Positives = 117/262 (44%), Gaps = 39/262 (14%)

Query: 69  DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAP 128
           D    N +I  + +  ++A AR LF  +  K+ VSWS MI  Y   G LD+A        
Sbjct: 158 DVFVCNALIMMYSEVGSLALARLLFDKIENKDVVSWSTMIRSYDRSGLLDEA-------- 209

Query: 129 VKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSL 188
                                       L LLR M  + ++P+   + S+    + L+ L
Sbjct: 210 ----------------------------LDLLRDMHVMRVKPSEIGMISITHVLAELADL 241

Query: 189 QLGKQVHQLVFKSPLCKDTTA--LTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMIS 246
           +LGK +H  V ++  C  +     T LI MY KC +L  A ++F  + +  +++W AMI+
Sbjct: 242 KLGKAMHAYVMRNGKCGKSGVPLCTALIDMYVKCENLAYARRVFDGLSKASIISWTAMIA 301

Query: 247 GYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIA 306
            Y       + +RLF KM  EGM P+ IT ++L+  C  AG ++LG +   +     G  
Sbjct: 302 AYIHCNNLNEGVRLFVKMLGEGMFPNEITMLSLVKECGTAGALELG-KLLHAFTLRNGFT 360

Query: 307 AKPDHYTCMVDLLGRAGKLVEA 328
                 T  +D+ G+ G +  A
Sbjct: 361 LSLVLATAFIDMYGKCGDVRSA 382



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/154 (30%), Positives = 77/154 (50%), Gaps = 2/154 (1%)

Query: 128 PVKSVVAWT--AMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHL 185
           P+ ++ +++  A I  ++   Y++N+   D  K+   M G     +   + SVL  C  +
Sbjct: 78  PLAALESYSSNAAIHSFLITSYIKNNCPADAAKIYAYMRGTDTEVDNFVIPSVLKACCLI 137

Query: 186 SSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMI 245
            S  LG++VH  V K+    D      LI MY + G L  A  LF +I+ KDVV+W+ MI
Sbjct: 138 PSFLLGQEVHGFVVKNGFHGDVFVCNALIMMYSEVGSLALARLLFDKIENKDVVSWSTMI 197

Query: 246 SGYAQHGKGEKALRLFDKMKDEGMKPDSITFVAL 279
             Y + G  ++AL L   M    +KP  I  +++
Sbjct: 198 RSYDRSGLLDEALDLLRDMHVMRVKPSEIGMISI 231


>gi|224060371|ref|XP_002300166.1| predicted protein [Populus trichocarpa]
 gi|222847424|gb|EEE84971.1| predicted protein [Populus trichocarpa]
          Length = 719

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 214/494 (43%), Positives = 304/494 (61%), Gaps = 11/494 (2%)

Query: 57  AAFDFFQRLPIK-DTAS----WNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGY 111
           +AF  F   P + D+ S    WN +I G  +  +M KA  LF AMP+K +VSWS +I G+
Sbjct: 232 SAFKVFDESPERFDSGSSALLWNVLIKGCCKAGSMKKAVKLFKAMPKKENVSWSTLIDGF 291

Query: 112 IECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPN 171
            + G +D+A+ELF   P K+VV+WT M+ G+ +     N  +E  L +   M+  G+RPN
Sbjct: 292 AKNGDMDRAMELFDQMPEKNVVSWTTMVDGFSR-----NGDSEKALSMFSKMLEEGVRPN 346

Query: 172 ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFL 231
           A ++ S L  C+ +  L+ G ++H+ +  + L       T L+ MY KCG++E A ++F 
Sbjct: 347 AFTIVSALSACAKIGGLEAGLRIHKYIKDNGLHLTEALGTALVDMYAKCGNIESASEVFG 406

Query: 232 EIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDL 291
           E ++K + TW  MI G+A HG  E+A+  F +M   G+KPD + F+ALL AC H+G VD+
Sbjct: 407 ETEQKSIRTWTVMIWGWAIHGHSEQAIACFKQMMFAGIKPDEVVFLALLTACMHSGQVDI 466

Query: 292 GIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSAC 351
           G+ +FDSM  DY I     HYT +VD+LGR+G+L EA+  I++MP  P   I+G L  AC
Sbjct: 467 GLNFFDSMRLDYCIEPSMKHYTLIVDMLGRSGQLKEALRFIERMPMNPDFVIWGALFCAC 526

Query: 352 RVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMP 411
           R HK+  +A+FA   L  L P +  G Y+ L+N YAA+ +W+D  R+R+ M+   V K  
Sbjct: 527 RAHKKTKMAKFALNKLLKLEPTH-TGNYIFLSNAYAALGQWEDAERVRVLMQNRGVHKNS 585

Query: 412 GYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKE 471
           G+S IEV   VH F SGD  H +  +I  KL+E+       GY+P  E+ LH + +E KE
Sbjct: 586 GWSCIEVEGQVHRFVSGDHDHKDSKAICLKLEEIMAGAVKQGYIPGTEWVLHNMEQEEKE 645

Query: 472 QLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRF 531
            +L  H EKLA+AF LI    G  IR+ KNL+VCGDCH   KY S I +REI++RD  RF
Sbjct: 646 DVLGSHGEKLALAFALICTSPGMTIRIVKNLQVCGDCHSLMKYASKISQREIMLRDMKRF 705

Query: 532 HHFKDGTCSCGDYW 545
           HHFKDG+CSC D+W
Sbjct: 706 HHFKDGSCSCRDHW 719



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 70/277 (25%), Positives = 120/277 (43%), Gaps = 23/277 (8%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  K  V+W++++ GFAK  G +  A ELFD++P+ +VVS+  M+     N D   A   
Sbjct: 276 MPKKENVSWSTLIDGFAKN-GDMDRAMELFDQMPEKNVVSWTTMVDGFSRNGDSEKALSM 334

Query: 61  FFQRL---------PIKDTASWNTMISGFVQKKNMAK-ARDLFLAMPEKNSVSWSAMISG 110
           F + L          I    S    I G      + K  +D  L + E      +A++  
Sbjct: 335 FSKMLEEGVRPNAFTIVSALSACAKIGGLEAGLRIHKYIKDNGLHLTEALG---TALVDM 391

Query: 111 YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRP 170
           Y +CG ++ A E+F     KS+  WT MI G+   G+     +E  +   + M+  GI+P
Sbjct: 392 YAKCGNIESASEVFGETEQKSIRTWTVMIWGWAIHGH-----SEQAIACFKQMMFAGIKP 446

Query: 171 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTA--LTPLISMYCKCGDLEDACK 228
           +     ++L  C H   + +G        +   C + +    T ++ M  + G L++A +
Sbjct: 447 DEVVFLALLTACMHSGQVDIGLNFFD-SMRLDYCIEPSMKHYTLIVDMLGRSGQLKEALR 505

Query: 229 LFLEI-QRKDVVTWNAMISGYAQHGKGEKALRLFDKM 264
               +    D V W A+      H K + A    +K+
Sbjct: 506 FIERMPMNPDFVIWGALFCACRAHKKTKMAKFALNKL 542



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 74/354 (20%), Positives = 137/354 (38%), Gaps = 111/354 (31%)

Query: 117 LDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLS 176
           ++ ++ +F     K++  + A+I G        NS   + +   R+M+  GI+P+  +  
Sbjct: 129 INHSLAVFNHHKPKNLFTFNALIRGL-----TTNSHFFNAIFHFRLMLRSGIKPDRLTYP 183

Query: 177 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMY------------------- 217
            VL   + L S +LG  +H ++ +  +  D+     L+ MY                   
Sbjct: 184 FVLKSMAGLFSTELGMAIHCMILRCGIELDSFVRVSLVDMYVKVEKLGSAFKVFDESPER 243

Query: 218 -----------------CKCGDLEDACKLFLEIQRKD----------------------- 237
                            CK G ++ A KLF  + +K+                       
Sbjct: 244 FDSGSSALLWNVLIKGCCKAGSMKKAVKLFKAMPKKENVSWSTLIDGFAKNGDMDRAMEL 303

Query: 238 --------VVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLV 289
                   VV+W  M+ G++++G  EKAL +F KM +EG++P++ T V+ L AC   G +
Sbjct: 304 FDQMPEKNVVSWTTMVDGFSRNGDSEKALSMFSKMLEEGVRPNAFTIVSALSACAKIGGL 363

Query: 290 DLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKL------------------------ 325
           + G++     + D G+       T +VD+  + G +                        
Sbjct: 364 EAGLR-IHKYIKDNGLHLTEALGTALVDMYAKCGNIESASEVFGETEQKSIRTWTVMIWG 422

Query: 326 -------VEAVDLIKKMPF---KPQPAIFGTLLSACRVHKRLDLAEFAAMNLFN 369
                   +A+   K+M F   KP   +F  LL+AC    ++D+     +N F+
Sbjct: 423 WAIHGHSEQAIACFKQMMFAGIKPDEVVFLALLTACMHSGQVDI----GLNFFD 472



 Score = 42.0 bits (97), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 62/265 (23%), Positives = 104/265 (39%), Gaps = 21/265 (7%)

Query: 170 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 229
           P  +   S++ G   +  LQL  Q+H  +    L   +   T LIS       +  +  +
Sbjct: 79  PTEAHFISLIHGSKTI--LQL-HQIHAQIIIHNLSSSSLITTQLISSSSLRKSINHSLAV 135

Query: 230 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLV 289
           F   + K++ T+NA+I G   +     A+  F  M   G+KPD +T+  +L +       
Sbjct: 136 FNHHKPKNLFTFNALIRGLTTNSHFFNAIFHFRLMLRSGIKPDRLTYPFVLKSMAGLFST 195

Query: 290 DLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK----PQPAIFG 345
           +LG+     M+   GI         +VD+  +  KL  A  +  + P +        ++ 
Sbjct: 196 ELGMA-IHCMILRCGIELDSFVRVSLVDMYVKVEKLGSAFKVFDESPERFDSGSSALLWN 254

Query: 346 TLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKEN 405
            L+  C     +      A+ LF   P      +  L + +A     D    +   M E 
Sbjct: 255 VLIKGCCKAGSMK----KAVKLFKAMPKKENVSWSTLIDGFAKNGDMDRAMELFDQMPEK 310

Query: 406 NVVKMPGYSWIEVGTVVHEF-RSGD 429
           NVV     SW    T+V  F R+GD
Sbjct: 311 NVV-----SWT---TMVDGFSRNGD 327


>gi|125601229|gb|EAZ40805.1| hypothetical protein OsJ_25283 [Oryza sativa Japonica Group]
          Length = 492

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 215/488 (44%), Positives = 299/488 (61%), Gaps = 6/488 (1%)

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQL 117
           A D F   P++D    N M++ +V +  +A+AR +F  MP ++ VSW+ MI GY   G++
Sbjct: 11  ARDAFDEAPLRDVFLCNVMLAAYVSRSEVAEARKVFDGMPMRDLVSWNTMIHGYAMRGEV 70

Query: 118 DKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSS 177
             A E+F     +   +W++MIS Y K     +  +++ L+L R M    I P+  +L S
Sbjct: 71  GLAREIFDGTEDRDAFSWSSMISAYAK-----SRRSKEALELWREMHAASIIPDCITLVS 125

Query: 178 VLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKD 237
           V+  CS L +L +G +VH+ V  + +  D    T LI MY KCGD+E A ++F  +  KD
Sbjct: 126 VVSACSDLGALAVGAEVHRFVESNRIELDLKLGTALIDMYAKCGDIESAQRVFDRMPEKD 185

Query: 238 VVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFD 297
           V TW++MI G A HG G ++L LF KM  EGMKP+ +TFV +L+AC H GLV  G +YF 
Sbjct: 186 VQTWSSMIIGLANHGLGHESLSLFSKMISEGMKPNGVTFVGVLIACTHVGLVSEGKKYFR 245

Query: 298 SMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRL 357
           SM   +GI    +HY CMVDLLGR+G + EA  LI+ M F+P   I+  LL ACR+HK +
Sbjct: 246 SMNEVHGIEPTVEHYGCMVDLLGRSGHVEEARQLIRSMTFEPDTIIWRALLGACRIHKNV 305

Query: 358 DLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIE 417
           ++AE A   L  L+P    G YV L+NIYA    W+ VA +R +++ +N+ ++PG S IE
Sbjct: 306 EIAEEAMAKLRVLDPL-GDGHYVLLSNIYAQANSWEGVAEMRKTIRRDNIQRIPGRSSIE 364

Query: 418 VGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFH 477
               +HEF SGDR+HP    I+  L+E+  R+K AGY P     L  + E+ KE+ L  H
Sbjct: 365 WDEKIHEFVSGDRLHPRSKEIYRVLEEMMDRLKQAGYKPMTGLVLQDIDEQSKERSLAEH 424

Query: 478 SEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDG 537
           SEKLAIAF L+  P  + IR+ KNLR C DCH A K IS +  R++IVRD  RFHHF +G
Sbjct: 425 SEKLAIAFALLTTPARSTIRITKNLRACEDCHSAMKLISLVYDRKLIVRDRNRFHHFSEG 484

Query: 538 TCSCGDYW 545
            CSC DYW
Sbjct: 485 QCSCKDYW 492



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 74/310 (23%), Positives = 130/310 (41%), Gaps = 66/310 (21%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
           N +LA +   R ++ +A+++FD +P  D+VS+N M+    +   +V  A + F     +D
Sbjct: 27  NVMLAAYV-SRSEVAEARKVFDGMPMRDLVSWNTMIHGYAMRG-EVGLAREIFDGTEDRD 84

Query: 70  TASWNTMISGFVQKKNMAKARDLFLAMP-------------------------------- 97
             SW++MIS + + +   +A +L+  M                                 
Sbjct: 85  AFSWSSMISAYAKSRRSKEALELWREMHAASIIPDCITLVSVVSACSDLGALAVGAEVHR 144

Query: 98  --EKNSVSW-----SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVEN 150
             E N +       +A+I  Y +CG ++ A  +F   P K V  W++MI G    G    
Sbjct: 145 FVESNRIELDLKLGTALIDMYAKCGDIESAQRVFDRMPEKDVQTWSSMIIGLANHGL--- 201

Query: 151 SWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTAL 210
               + L L   MI  G++PN  +   VL+ C+H+  +  GK+     F+S    +   +
Sbjct: 202 --GHESLSLFSKMISEGMKPNGVTFVGVLIACTHVGLVSEGKK----YFRS--MNEVHGI 253

Query: 211 TPLISMY-C------KCGDLEDACKLFLEIQ-RKDVVTWNAMISGYAQHGKGEKA----- 257
            P +  Y C      + G +E+A +L   +    D + W A++     H   E A     
Sbjct: 254 EPTVEHYGCMVDLLGRSGHVEEARQLIRSMTFEPDTIIWRALLGACRIHKNVEIAEEAMA 313

Query: 258 -LRLFDKMKD 266
            LR+ D + D
Sbjct: 314 KLRVLDPLGD 323


>gi|359484341|ref|XP_002280538.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
 gi|297738773|emb|CBI28018.3| unnamed protein product [Vitis vinifera]
          Length = 695

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 236/588 (40%), Positives = 335/588 (56%), Gaps = 50/588 (8%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQ-----PDVVSYNIMLSC-------- 47
           M+V   V++N+V+AGF+   G    A E F ++ +      D    +++ +C        
Sbjct: 115 MSVHDAVSYNTVIAGFSGN-GCSSQALEFFVRMQEEGFESTDYTHVSVLHACSQLLDIKR 173

Query: 48  ---------------------ILLNSDDVVAAFD----FFQRLPIKDTASWNTMISGFVQ 82
                                 L N      A D     F R+  K+  SWN+MISG++Q
Sbjct: 174 GKQIHGRIVATSLGESVFVWNALTNMYAKCGALDQARWLFDRMVNKNVVSWNSMISGYLQ 233

Query: 83  KKNMAKARDLFLAMPEK----NSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAM 138
                    LF  M       + V+ S ++S Y +CG +D+A + F+    K  V WT M
Sbjct: 234 NGQPETCTKLFCEMQSSGLMPDQVTISNILSAYFQCGYIDEACKTFREIKEKDKVCWTTM 293

Query: 139 ISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLV 198
           +      G  +N   ED L L R M+   +RP+  ++SSV+  C+ L+SL  G+ VH   
Sbjct: 294 M-----VGCAQNGKEEDALLLFREMLLENVRPDNFTISSVVSSCARLASLCQGQAVHGKA 348

Query: 199 FKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKAL 258
               +  D    + L+ MY KCG+  DA  +F  +  ++V++WN+MI GYAQ+GK  +AL
Sbjct: 349 VIFGVDHDLLVSSALVDMYSKCGETADAWIVFKRMLTRNVISWNSMILGYAQNGKDLEAL 408

Query: 259 RLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDL 318
            L+++M  E +KPD+ITFV +L AC HAGLV+ G  YF S+   +G+    DHY+CM++L
Sbjct: 409 ALYEEMLHENLKPDNITFVGVLSACMHAGLVERGQGYFYSISKIHGMNPTFDHYSCMINL 468

Query: 319 LGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGC 378
           LGRAG + +AVDLIK M F+P   I+ TLLS CR++  ++  E AA +LF L+P N AG 
Sbjct: 469 LGRAGYMDKAVDLIKSMTFEPNCLIWSTLLSVCRINCDVNNGEMAARHLFELDPHN-AGP 527

Query: 379 YVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSI 438
           Y+ L+NIYAA  +W DVA +R  MK N + K   YSWIE+   VH+F + DR H E   I
Sbjct: 528 YIMLSNIYAACGRWKDVAAVRSLMKNNKIKKFAAYSWIEIDNQVHKFVAEDRTHSETEQI 587

Query: 439 HEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLG-TPIR 497
           +E+L  L K+++ +G+ PD    LH V EE K   + +HSEKLA+AF LIK P G TPIR
Sbjct: 588 YEELNRLIKKLQESGFTPDTNLVLHDVVEEEKFDSICYHSEKLALAFWLIKKPHGRTPIR 647

Query: 498 VFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           + KN+RVCGDCH   K++S I +R II+RD  RFHHF +G CSC D W
Sbjct: 648 IMKNIRVCGDCHVFMKFVSKIIRRPIILRDINRFHHFIEGRCSCKDSW 695



 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 95/340 (27%), Positives = 162/340 (47%), Gaps = 23/340 (6%)

Query: 22  KLKDAQELFDKIPQPDVVSYN-IMLSCILLNSDDVVAA------FDFFQRLPIKDTASWN 74
           +L++A +        +  SY  ++L C+   S+DVV A       D     P  DT   N
Sbjct: 6   RLREAIDALYSRGTANSESYTRLLLQCV--RSNDVVQAKRLQTHMDLHLYQPT-DTFLQN 62

Query: 75  TMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVA 134
            ++  + +  N++ ARDLF  M  ++  SW+AM+S Y + G ++    +F    V   V+
Sbjct: 63  RLLHLYAKSGNLSDARDLFDKMSRRDVFSWNAMLSAYSKSGNVEDLRAVFDQMSVHDAVS 122

Query: 135 WTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQV 194
           +  +I+G+       N  +   L+    M   G      +  SVL  CS L  ++ GKQ+
Sbjct: 123 YNTVIAGFSG-----NGCSSQALEFFVRMQEEGFESTDYTHVSVLHACSQLLDIKRGKQI 177

Query: 195 HQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKG 254
           H  +  + L +       L +MY KCG L+ A  LF  +  K+VV+WN+MISGY Q+G+ 
Sbjct: 178 HGRIVATSLGESVFVWNALTNMYAKCGALDQARWLFDRMVNKNVVSWNSMISGYLQNGQP 237

Query: 255 EKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTC 314
           E   +LF +M+  G+ PD +T   +L A    G +D   + F  +     +      +T 
Sbjct: 238 ETCTKLFCEMQSSGLMPDQVTISNILSAYFQCGYIDEACKTFREIKEKDKVC-----WTT 292

Query: 315 MVDLLGRAGKLVEAVDLIKKM---PFKPQPAIFGTLLSAC 351
           M+    + GK  +A+ L ++M     +P      +++S+C
Sbjct: 293 MMVGCAQNGKEEDALLLFREMLLENVRPDNFTISSVVSSC 332


>gi|356513929|ref|XP_003525660.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 736

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 235/570 (41%), Positives = 324/570 (56%), Gaps = 50/570 (8%)

Query: 19  QRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMIS 78
           Q G+L+ A+ +FDK    D VS+  +++   ++   V  A   F  +P KD  SWN MI+
Sbjct: 174 QVGELRHARLVFDKSTLRDAVSFTALITG-YVSEGHVDDARRLFDEIPAKDVVSWNAMIA 232

Query: 79  GFVQKKNMAKARDLFLAMPEKN---------SV-----------------SW-------- 104
           G+VQ     +A   F  M E +         SV                 SW        
Sbjct: 233 GYVQSGRFEEALACFTRMQEADVSPNQSTMVSVLSACGHLRSLELGKWIGSWVRDRGFGK 292

Query: 105 -----SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKL 159
                +A++  Y +CG++  A +LF     K V+ W  MI GY        S  E+ L L
Sbjct: 293 NLQLVNALVDMYSKCGEIGTARKLFDGMEDKDVILWNTMIGGYCHL-----SLYEEALVL 347

Query: 160 LRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK----SPLCKDTTALTPLIS 215
             +M+   + PN  +  +VL  C+ L +L LGK VH  + K    +    + +  T +I 
Sbjct: 348 FEVMLRENVTPNDVTFLAVLPACASLGALDLGKWVHAYIDKNLKGTGNVNNVSLWTSIIV 407

Query: 216 MYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSIT 275
           MY KCG +E A ++F  +  + + +WNAMISG A +G  E+AL LF++M +EG +PD IT
Sbjct: 408 MYAKCGCVEVAEQVFRSMGSRSLASWNAMISGLAMNGHAERALGLFEEMINEGFQPDDIT 467

Query: 276 FVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335
           FV +L AC  AG V+LG +YF SM  DYGI+ K  HY CM+DLL R+GK  EA  L+  M
Sbjct: 468 FVGVLSACTQAGFVELGHRYFSSMNKDYGISPKLQHYGCMIDLLARSGKFDEAKVLMGNM 527

Query: 336 PFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDV 395
             +P  AI+G+LL+ACR+H +++  E+ A  LF L P N+ G YV L+NIYA   +WDDV
Sbjct: 528 EMEPDGAIWGSLLNACRIHGQVEFGEYVAERLFELEPENS-GAYVLLSNIYAGAGRWDDV 586

Query: 396 ARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYV 455
           A+IR  + +  + K+PG + IE+  VVHEF  GD+ HP+  +I   L E+++ ++  G+V
Sbjct: 587 AKIRTKLNDKGMKKVPGCTSIEIDGVVHEFLVGDKFHPQSENIFRMLDEVDRLLEETGFV 646

Query: 456 PDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYI 515
           PD    L+ + EE KE  L  HSEKLAIAFGLI    G+ IR+ KNLRVC +CH ATK I
Sbjct: 647 PDTSEVLYDMDEEWKEGALTQHSEKLAIAFGLISTKPGSTIRIVKNLRVCRNCHSATKLI 706

Query: 516 SAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           S I  REII RD  RFHHFKDG CSC D W
Sbjct: 707 SKIFNREIIARDRNRFHHFKDGFCSCNDRW 736



 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 90/265 (33%), Positives = 139/265 (52%), Gaps = 8/265 (3%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVV 133
            ++I  + Q   +  AR +F     +++VS++A+I+GY+  G +D A  LF   P K VV
Sbjct: 166 TSLIHMYSQVGELRHARLVFDKSTLRDAVSFTALITGYVSEGHVDDARRLFDEIPAKDVV 225

Query: 134 AWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ 193
           +W AMI+GY++ G       E+ L     M    + PN S++ SVL  C HL SL+LGK 
Sbjct: 226 SWNAMIAGYVQSGRF-----EEALACFTRMQEADVSPNQSTMVSVLSACGHLRSLELGKW 280

Query: 194 VHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGK 253
           +   V      K+   +  L+ MY KCG++  A KLF  ++ KDV+ WN MI GY     
Sbjct: 281 IGSWVRDRGFGKNLQLVNALVDMYSKCGEIGTARKLFDGMEDKDVILWNTMIGGYCHLSL 340

Query: 254 GEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG---IQYFDSMVNDYGIAAKPD 310
            E+AL LF+ M  E + P+ +TF+A+L AC   G +DLG     Y D  +   G      
Sbjct: 341 YEEALVLFEVMLRENVTPNDVTFLAVLPACASLGALDLGKWVHAYIDKNLKGTGNVNNVS 400

Query: 311 HYTCMVDLLGRAGKLVEAVDLIKKM 335
            +T ++ +  + G +  A  + + M
Sbjct: 401 LWTSIIVMYAKCGCVEVAEQVFRSM 425



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 63/210 (30%), Positives = 98/210 (46%), Gaps = 32/210 (15%)

Query: 157 LKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVH--------------------- 195
           L L   M+  G+ PN+ +  S+   C+   +    KQ+H                     
Sbjct: 112 LHLFSQMLHSGLYPNSHTFPSLFKSCAKSKATHEAKQLHAHALKLALHLHPHVHTSLIHM 171

Query: 196 ----------QLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMI 245
                     +LVF     +D  + T LI+ Y   G ++DA +LF EI  KDVV+WNAMI
Sbjct: 172 YSQVGELRHARLVFDKSTLRDAVSFTALITGYVSEGHVDDARRLFDEIPAKDVVSWNAMI 231

Query: 246 SGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGI 305
           +GY Q G+ E+AL  F +M++  + P+  T V++L AC H   ++LG ++  S V D G 
Sbjct: 232 AGYVQSGRFEEALACFTRMQEADVSPNQSTMVSVLSACGHLRSLELG-KWIGSWVRDRGF 290

Query: 306 AAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335
                    +VD+  + G++  A  L   M
Sbjct: 291 GKNLQLVNALVDMYSKCGEIGTARKLFDGM 320



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 96/236 (40%), Gaps = 15/236 (6%)

Query: 177 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCG---DLEDACKLFLEI 233
           ++L  C  + SL   KQ+H L+ KS L     A + LI  +C      DL  A  LF  I
Sbjct: 30  NLLAKCPDIPSL---KQIHSLIIKSGLHNTLFAQSKLIE-FCALSPSRDLSYALSLFHSI 85

Query: 234 --QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDL 291
             Q  ++  WN +I  ++       +L LF +M   G+ P+S TF +L  +C  +     
Sbjct: 86  HHQPPNIFIWNTLIRAHSLTPTPTSSLHLFSQMLHSGLYPNSHTFPSLFKSCAKSKATHE 145

Query: 292 GIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSAC 351
             Q     +    +   P  +T ++ +  + G+L  A  +  K   +     F  L++  
Sbjct: 146 AKQLHAHALK-LALHLHPHVHTSLIHMYSQVGELRHARLVFDKSTLR-DAVSFTALITGY 203

Query: 352 RVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNV 407
                +D     A  LF+  PA     +  +   Y    ++++       M+E +V
Sbjct: 204 VSEGHVD----DARRLFDEIPAKDVVSWNAMIAGYVQSGRFEEALACFTRMQEADV 255


>gi|357167109|ref|XP_003581008.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Brachypodium distachyon]
          Length = 921

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 215/577 (37%), Positives = 335/577 (58%), Gaps = 46/577 (7%)

Query: 7   VNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLN--SDDVVAAFDFFQR 64
           V+WN+++ G+  Q G + +A+ELFD++P  + +S+  M++    N  S++ +       R
Sbjct: 353 VSWNAMITGYM-QNGMVDEAKELFDRMPFRNTISWAGMIAGYAQNGRSEEALDLLQALHR 411

Query: 65  -------------------------------LPIKDTASWNT-----MISGFVQKKNMAK 88
                                          L +K    +N+     +IS + + +NM  
Sbjct: 412 NGMLPSLSSLTSSFLACSHIGALETGRQVHSLAVKAGCQFNSYVCNALISMYGKCRNMEY 471

Query: 89  ARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYV 148
            R +F  M  K++VSW++ I+  ++   L+ A  +F     + VV+WT +IS Y      
Sbjct: 472 VRQVFNRMRVKDTVSWNSFIAALVQNNMLEDARHIFDNMLSRDVVSWTTIISAY-----A 526

Query: 149 ENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTT 208
           +    ++ ++  + M+    +PN+  L+ +L  C  L S +LG+Q+H +  K  +  +  
Sbjct: 527 QAERGDEAVEFFKTMLHEHEKPNSPILTILLSVCGGLGSAKLGQQIHTVAIKHGMDSELI 586

Query: 209 ALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEG 268
               L+SMY KCG   D+ K+F  ++ +D+ TWN  I+G AQHG G +A+++++ M+  G
Sbjct: 587 VANALMSMYFKCG-CADSHKVFDSMEERDIFTWNTFITGCAQHGLGREAIKMYEHMESVG 645

Query: 269 MKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEA 328
           + P+ +TFV LL AC+HAGLVD G Q+F SM  DYG+    +HY CMVDLLGR G +  A
Sbjct: 646 VLPNEVTFVGLLNACSHAGLVDEGWQFFKSMSRDYGLTPLLEHYACMVDLLGRTGDVQGA 705

Query: 329 VDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAA 388
              I  MP +P   I+  LL AC++HK  ++   AA  LF   P+NA G YV L+NIY++
Sbjct: 706 EKFIYDMPIEPDTVIWSALLGACKIHKNAEIGRRAAEKLFTTEPSNA-GNYVMLSNIYSS 764

Query: 389 MKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKR 448
           +  W +VA +R  MK+  V K PG SW+++   VH F +GD+ H ++  I   L++L   
Sbjct: 765 LGMWVEVAELRKIMKQRGVSKEPGCSWMQIRNKVHSFVTGDKQHEKIEEIDYTLQDLYTL 824

Query: 449 MKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDC 508
           ++  GYVPD EF LH + EE KE  LL+HSEKLA+A+GL+  P G PI++ KNLR+CGDC
Sbjct: 825 LRGTGYVPDTEFVLHDIDEEQKESSLLYHSEKLAVAYGLLVTPKGMPIQIMKNLRICGDC 884

Query: 509 HRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           H   K++S + KR+I +RD  RFHHF++G+CSCGD+W
Sbjct: 885 HTFIKFVSHVTKRDIDIRDGNRFHHFRNGSCSCGDFW 921



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 90/300 (30%), Positives = 165/300 (55%), Gaps = 10/300 (3%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
            S+L  + +    L  A + FD + + +  +++ M++  L +   + AA   + R P+K 
Sbjct: 262 TSILNVYTRDASALDIAIKFFDGMVERNEYTWSTMIAA-LSHGGRIDAAIAVYGRDPVKS 320

Query: 70  TASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPV 129
             S   +++G  +   + +AR LF  +P+   VSW+AMI+GY++ G +D+A ELF   P 
Sbjct: 321 IPSQTALLTGLARCGRITEARILFEQIPDPIVVSWNAMITGYMQNGMVDEAKELFDRMPF 380

Query: 130 KSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQ 189
           ++ ++W  MI+     GY +N  +E+ L LL+ +   G+ P+ SSL+S  L CSH+ +L+
Sbjct: 381 RNTISWAGMIA-----GYAQNGRSEEALDLLQALHRNGMLPSLSSLTSSFLACSHIGALE 435

Query: 190 LGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYA 249
            G+QVH L  K+    ++     LISMY KC ++E   ++F  ++ KD V+WN+ I+   
Sbjct: 436 TGRQVHSLAVKAGCQFNSYVCNALISMYGKCRNMEYVRQVFNRMRVKDTVSWNSFIAALV 495

Query: 250 QHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKP 309
           Q+   E A  +FD M    +  D +++  ++ A   A   D  +++F +M++++     P
Sbjct: 496 QNNMLEDARHIFDNM----LSRDVVSWTTIISAYAQAERGDEAVEFFKTMLHEHEKPNSP 551



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 94/339 (27%), Positives = 169/339 (49%), Gaps = 17/339 (5%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  +  + WNS+++ +    G L+DA+ LFD I   +V +  I+LS        V+ A  
Sbjct: 59  MPHRDIIAWNSMISAYCNS-GMLEDARILFDAISGGNVRTATILLSG-YARLGRVLDARR 116

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
            F  +P ++T +WN M+S +VQ  ++  AR LF AMP ++  SW++M++GY    Q+  A
Sbjct: 117 VFDGMPERNTVAWNAMVSCYVQNGDITMARRLFDAMPSRDVTSWNSMVTGYCHSRQMVDA 176

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLL 180
             LFK  P +++V WT MISGY++       W      + RMM   G  P+ S+ +SVL 
Sbjct: 177 WNLFKQMPQRNLVTWTVMISGYVRIEQHGKGW-----DIFRMMHHEGASPDQSNFASVLS 231

Query: 181 GCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCK-CGDLEDACKLFLEIQRKDVV 239
             + L  L + + +  LV K+    D    T ++++Y +    L+ A K F  +  ++  
Sbjct: 232 AVTGLQDLGVLEVLRPLVLKTGFESDVVIGTSILNVYTRDASALDIAIKFFDGMVERNEY 291

Query: 240 TWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSM 299
           TW+ MI+  +  G+ + A+ ++ +   + +   +    ALL      G +      F+ +
Sbjct: 292 TWSTMIAALSHGGRIDAAIAVYGRDPVKSIPSQT----ALLTGLARCGRITEARILFEQI 347

Query: 300 VNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 338
            +   ++     +  M+    + G + EA +L  +MPF+
Sbjct: 348 PDPIVVS-----WNAMITGYMQNGMVDEAKELFDRMPFR 381



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 82/338 (24%), Positives = 134/338 (39%), Gaps = 99/338 (29%)

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQL 117
           A + F  +P +D  +WN+MIS +     +  AR LF A+   N  + + ++SGY   G++
Sbjct: 52  AREVFDAMPHRDIIAWNSMISAYCNSGMLEDARILFDAISGGNVRTATILLSGYARLGRV 111

Query: 118 DKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSS 177
             A  +F   P ++ VAW AM+S Y++ G +                             
Sbjct: 112 LDARRVFDGMPERNTVAWNAMVSCYVQNGDI----------------------------- 142

Query: 178 VLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKD 237
                           + + +F +   +D T+   +++ YC    + DA  LF ++ +++
Sbjct: 143 ---------------TMARRLFDAMPSRDVTSWNSMVTGYCHSRQMVDAWNLFKQMPQRN 187

Query: 238 VVTWNAMISGYA---QHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG-- 292
           +VTW  MISGY    QHGKG    R+   M  EG  PD   F ++L A    GL DLG  
Sbjct: 188 LVTWTVMISGYVRIEQHGKGWDIFRM---MHHEGASPDQSNFASVLSAV--TGLQDLGVL 242

Query: 293 ------------------------------------IQYFDSMV--NDYGIAAKPDHYTC 314
                                               I++FD MV  N+Y        ++ 
Sbjct: 243 EVLRPLVLKTGFESDVVIGTSILNVYTRDASALDIAIKFFDGMVERNEYT-------WST 295

Query: 315 MVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACR 352
           M+  L   G++  A+ +  + P K  P+    L    R
Sbjct: 296 MIAALSHGGRIDAAIAVYGRDPVKSIPSQTALLTGLAR 333


>gi|347954522|gb|AEP33761.1| organelle transcript processing 82, partial [Crucihimalaya
           wallichii]
          Length = 710

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 227/568 (39%), Positives = 331/568 (58%), Gaps = 48/568 (8%)

Query: 19  QRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMIS 78
           Q G+L+DA+++FD+    DVVSY  +++    +   + +A   F  +PIKD  SWN MIS
Sbjct: 150 QNGRLEDARKVFDQSSHRDVVSYTALITG-YASKGYIASAQKMFDEIPIKDVVSWNAMIS 208

Query: 79  GFVQKKNMAKARDLFLAM------PEKNSV--------------------SW-------- 104
           G+ +  N  +A +LF  M      P+++++                    SW        
Sbjct: 209 GYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIELGRQVHSWIDDHGFGS 268

Query: 105 -----SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKL 159
                +A+I  YI+CG+++ A  LF+    K V++W  +I GY      +     + L L
Sbjct: 269 NLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYK-----EALLL 323

Query: 160 LRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK--SPLCKDTTALTPLISMY 217
            + M+  G  PN  ++ S+L  C+HL ++++G+ +H  + K    +   ++  T LI MY
Sbjct: 324 FQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANASSHRTSLIDMY 383

Query: 218 CKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFV 277
            KCGD+E A ++F  I  + + +WNAMI G+A HG+   A  +F +M+   ++PD ITFV
Sbjct: 384 AKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIEPDDITFV 443

Query: 278 ALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPF 337
            LL AC+H+G++DLG   F SM  DY I  K +HY CM+DLLG +G   EA ++I  M  
Sbjct: 444 GLLSACSHSGMLDLGRHIFRSMKEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINTMEM 503

Query: 338 KPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVAR 397
           +P   I+ +LL AC+++  ++L E  A NL  + P N  G YV L+NIYA   +W++VA+
Sbjct: 504 EPDGVIWCSLLKACKMYANVELGESYAQNLIKIEPKNP-GSYVLLSNIYATAGRWNEVAK 562

Query: 398 IRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPD 457
           IR  + +  + K+PG S IE+ +VVHEF  GD+ HP    I+  L+E+E  ++ AG+VPD
Sbjct: 563 IRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEEAGFVPD 622

Query: 458 LEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISA 517
               L  + EE KE  L  HSEKLAIAFGLI    GT + + KNLRVC +CH ATK IS 
Sbjct: 623 TSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISK 682

Query: 518 IEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           I KREII RD TRFHHF+DG CSC DYW
Sbjct: 683 IYKREIIARDRTRFHHFRDGVCSCNDYW 710



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 75/253 (29%), Positives = 118/253 (46%), Gaps = 37/253 (14%)

Query: 117 LDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLS 176
           L  A+ +F+     +++ W  M  G+       +S     L L   MI LG+ PN  +  
Sbjct: 53  LPYAISVFETIQEPNLLIWNTMFRGH-----ALSSDPVSALYLYVCMISLGLLPNCYTFP 107

Query: 177 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA---------- 226
            +L  C+   + + G+Q+H  V K     D    T LISMY + G LEDA          
Sbjct: 108 FLLKSCAKSKAFREGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHR 167

Query: 227 ---------------------CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMK 265
                                 K+F EI  KDVV+WNAMISGYA+ G  ++AL LF +M 
Sbjct: 168 DVVSYTALITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMM 227

Query: 266 DEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKL 325
              ++PD  T V+++ AC  +  ++LG Q   S ++D+G  +       ++DL  + G++
Sbjct: 228 KTNVRPDESTMVSVVSACAQSASIELGRQ-VHSWIDDHGFGSNLKIVNALIDLYIKCGEV 286

Query: 326 VEAVDLIKKMPFK 338
             A  L + + +K
Sbjct: 287 ETACGLFEGLSYK 299


>gi|302760843|ref|XP_002963844.1| hypothetical protein SELMODRAFT_80662 [Selaginella moellendorffii]
 gi|300169112|gb|EFJ35715.1| hypothetical protein SELMODRAFT_80662 [Selaginella moellendorffii]
          Length = 781

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 221/544 (40%), Positives = 339/544 (62%), Gaps = 15/544 (2%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSD--DVVAAFDFFQRLPI 67
           NS +  F    G L DA+ LF+ +   DVV++NI+++  + N +  + V  F   Q+  +
Sbjct: 245 NSAVNMFGNA-GLLGDARRLFEDMVDRDVVTWNIVITLYVQNENFGEAVRLFGRLQQDGV 303

Query: 68  K-DTASWNTMISGFVQKKNMAKARDLFLAMPE----KNSVSWSAMISGYIECGQLDKAVE 122
           K +  ++  M++ +    ++AK + +   + E    +++V  +A++S Y  C    +A +
Sbjct: 304 KANDITFVLMLNVYTSLTSLAKGKVIHELVKEAGYDRDAVVATALMSLYGRCEAPGQAWK 363

Query: 123 LFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGC 182
           +F     K V+ WT M        Y +N + ++ L+L + M   G RP +++L +VL  C
Sbjct: 364 IFVDMGSKDVITWTVMC-----VAYAQNGFRKEALQLFQEMQLEGRRPTSATLVAVLDTC 418

Query: 183 SHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWN 242
           +HL++LQ G+Q+H  + ++    +    T LI+MY KCG + +A  +F ++ ++D++ WN
Sbjct: 419 AHLAALQKGRQIHSHIIENRFRMEMVVETALINMYGKCGKMAEAMSVFEKMAKRDILVWN 478

Query: 243 AMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVND 302
           +M+  YAQHG  ++ L+LF++M+ +G+K D+++FV++L A +H+G V  G QYF +M+ D
Sbjct: 479 SMLGAYAQHGYYDETLQLFNQMQLDGVKADAVSFVSVLSALSHSGSVTDGYQYFVAMLQD 538

Query: 303 YGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP-FKPQPAIFGTLLSACRVHKRLDLAE 361
           + I   P+ Y C+VDLLGRAG++ EAVD++ K+    P   ++ TLL ACR H + D A+
Sbjct: 539 FSITPTPELYGCVVDLLGRAGRIQEAVDIVLKLSGCLPDGILWMTLLGACRTHNKTDQAK 598

Query: 362 FAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTV 421
            AA  +   +P+++ G YV L+N+YAA   WD V R+R  M+   V K PG S IE+   
Sbjct: 599 AAAEQVLERDPSHS-GAYVVLSNVYAAAGDWDGVNRMRKLMRSRGVKKEPGRSSIEILNR 657

Query: 422 VHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKL 481
           VHEF  GDR HP    I+ +L  L   M+ AGY+PD +  LH V +E KE +L +HSE+L
Sbjct: 658 VHEFLEGDRSHPRRHPIYAELDVLNSEMRAAGYIPDTKMILHDVEDERKEDMLFYHSERL 717

Query: 482 AIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSC 541
           AIAFGLI  P GTP+RV KNLRVC DCH ATKYIS +  REI+VRDT RFH+FKDG CSC
Sbjct: 718 AIAFGLISTPPGTPLRVIKNLRVCSDCHTATKYISKLRGREILVRDTHRFHNFKDGRCSC 777

Query: 542 GDYW 545
            DYW
Sbjct: 778 KDYW 781



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 79/270 (29%), Positives = 131/270 (48%), Gaps = 14/270 (5%)

Query: 19  QRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQR-----LPIKDT--A 71
           Q G + +AQ++F+ + + DV ++  M+       D   A   F+Q      +P K T  A
Sbjct: 51  QCGSVPEAQQVFEILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVA 110

Query: 72  SWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKS 131
             N   S    K  M     +     E +    +A+I+ Y +CG +  A + FK    + 
Sbjct: 111 ILNACASTESLKDGMEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRD 170

Query: 132 VVAWTAMISGYMKFG-YVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQL 190
           VV+WTAMI+  ++   +    W      L R M   G+ PN  +L +V       + L  
Sbjct: 171 VVSWTAMIAACVQHDQFALARW------LYRRMQLDGVVPNKITLYTVFNAYGDPNYLSE 224

Query: 191 GKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQ 250
           GK V+ LV    +  D   +   ++M+   G L DA +LF ++  +DVVTWN +I+ Y Q
Sbjct: 225 GKFVYGLVSSGVMESDVRVMNSAVNMFGNAGLLGDARRLFEDMVDRDVVTWNIVITLYVQ 284

Query: 251 HGKGEKALRLFDKMKDEGMKPDSITFVALL 280
           +    +A+RLF +++ +G+K + ITFV +L
Sbjct: 285 NENFGEAVRLFGRLQQDGVKANDITFVLML 314



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 70/271 (25%), Positives = 127/271 (46%), Gaps = 10/271 (3%)

Query: 69  DTASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMISGYIECGQLDKAVELF 124
           DTA +  ++      KN+   R +   +     E+N++    +I  Y +CG + +A ++F
Sbjct: 3   DTAFFVALLQRCSSAKNVDHGRRVHWHVRDRGFEQNNLVCGHLIQMYAQCGSVPEAQQVF 62

Query: 125 KVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSH 184
           ++   K V AWT MI  Y + G  + +     L +   M    + P   +  ++L  C+ 
Sbjct: 63  EILERKDVFAWTRMIGIYCQQGDYDRA-----LGMFYQMQEEDVMPTKVTYVAILNACAS 117

Query: 185 LSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAM 244
             SL+ G ++H  + +     D    T LI+MY KCG +  A   F  ++ +DVV+W AM
Sbjct: 118 TESLKDGMEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAM 177

Query: 245 ISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYG 304
           I+   QH +   A  L+ +M+ +G+ P+ IT   +  A      +  G ++   +V+   
Sbjct: 178 IAACVQHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPNYLSEG-KFVYGLVSSGV 236

Query: 305 IAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335
           + +        V++ G AG L +A  L + M
Sbjct: 237 MESDVRVMNSAVNMFGNAGLLGDARRLFEDM 267



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 50/194 (25%), Positives = 99/194 (51%), Gaps = 2/194 (1%)

Query: 169 RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK 228
           +P+ +   ++L  CS   ++  G++VH  V      ++      LI MY +CG + +A +
Sbjct: 1   KPDTAFFVALLQRCSSAKNVDHGRRVHWHVRDRGFEQNNLVCGHLIQMYAQCGSVPEAQQ 60

Query: 229 LFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGL 288
           +F  ++RKDV  W  MI  Y Q G  ++AL +F +M++E + P  +T+VA+L AC     
Sbjct: 61  VFEILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTES 120

Query: 289 VDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLL 348
           +  G++    ++   G        T ++++  + G +  A D  K++  +   + +  ++
Sbjct: 121 LKDGMEIHGQILQQ-GFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVS-WTAMI 178

Query: 349 SACRVHKRLDLAEF 362
           +AC  H +  LA +
Sbjct: 179 AACVQHDQFALARW 192


>gi|449453744|ref|XP_004144616.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449511814|ref|XP_004164061.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 681

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 220/536 (41%), Positives = 324/536 (60%), Gaps = 8/536 (1%)

Query: 11  SVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDT 70
           S L     + G+++  +++FD++   DVVS+N ++        ++  A + F+ +P KD+
Sbjct: 153 SSLVSMYSKCGEIELCRKVFDRMEDKDVVSWNSLIDG-YARCGEIELALEMFEEMPEKDS 211

Query: 71  ASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVK 130
            SW  +I G  +   +  ARD+F  MP +NSVSW+AMI+GY++ G  + A ELF   P +
Sbjct: 212 FSWTILIDGLSKSGKLEAARDVFDRMPIRNSVSWNAMINGYMKAGDSNTAKELFDQMPER 271

Query: 131 SVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQL 190
           S+V W +MI+GY +     N      LKL  +M+   I PN +++   +   S + SL  
Sbjct: 272 SLVTWNSMITGYER-----NKQFTKALKLFEVMLREDISPNYTTILGAVSAASGMVSLGT 326

Query: 191 GKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQ 250
           G+ VH  + KS    D    T LI MY KCG ++ A ++F  I +K +  W ++I G   
Sbjct: 327 GRWVHSYIVKSGFKTDGVLGTLLIEMYSKCGSVKSALRVFRSIPKKKLGHWTSVIVGLGM 386

Query: 251 HGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPD 310
           HG  E+ L LFD+M   G+KP +ITF+ +L AC+HAG  +   +YF  M  DYGI    +
Sbjct: 387 HGLVEQTLELFDEMCRTGLKPHAITFIGVLNACSHAGFAEDAHRYFKMMTYDYGIKPSIE 446

Query: 311 HYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNL 370
           HY C++D+L RAG L EA D I++MP K    I+ +LLS  R H  + + E+AA +L +L
Sbjct: 447 HYGCLIDVLCRAGHLEEAKDTIERMPIKANKVIWTSLLSGSRKHGNIRMGEYAAQHLIDL 506

Query: 371 NPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDR 430
            P +  GCYV L+N+YAA   W+ V ++R  MK+  + K PG S IE    +HEF  GD+
Sbjct: 507 AP-DTTGCYVILSNMYAAAGLWEKVRQVREMMKKKGMKKDPGCSSIEHQGSIHEFIVGDK 565

Query: 431 VHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEE-VKEQLLLFHSEKLAIAFGLIK 489
            HP+   I+ KL E++K++ +AG++PD    L  + E+  KE  L  HSE+LAIAFGL+ 
Sbjct: 566 SHPQTEEIYIKLCEMKKKLNVAGHIPDTTQVLLCLEEDNEKEAELETHSERLAIAFGLLN 625

Query: 490 VPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           +  G+PIR+ KNLR+C DCH  TK +S I  REII+RD +RFHHFK G+CSC D+W
Sbjct: 626 IKHGSPIRIIKNLRICNDCHAVTKLLSHIYNREIIIRDGSRFHHFKSGSCSCKDFW 681



 Score =  108 bits (269), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 70/221 (31%), Positives = 117/221 (52%), Gaps = 15/221 (6%)

Query: 116 QLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSL 175
            L  A  LF      ++V+W  +I  Y     +EN  + D + L   ++     P++ +L
Sbjct: 64  NLQYAHSLFDWIQEPTLVSWNLLIKCY-----IENQRSNDAIALFCKLL-CDFVPDSFTL 117

Query: 176 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR 235
             VL GC+ L +LQ GKQ+H LV K     D   L+ L+SMY KCG++E   K+F  ++ 
Sbjct: 118 PCVLKGCARLGALQEGKQIHGLVLKIGFGVDKFVLSSLVSMYSKCGEIELCRKVFDRMED 177

Query: 236 KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQY 295
           KDVV+WN++I GYA+ G+ E AL +F++M ++    DS ++  L+   + +G ++     
Sbjct: 178 KDVVSWNSLIDGYARCGEIELALEMFEEMPEK----DSFSWTILIDGLSKSGKLEAARDV 233

Query: 296 FDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 336
           FD M     ++     +  M++   +AG    A +L  +MP
Sbjct: 234 FDRMPIRNSVS-----WNAMINGYMKAGDSNTAKELFDQMP 269


>gi|357118480|ref|XP_003560982.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Brachypodium distachyon]
          Length = 796

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 227/534 (42%), Positives = 317/534 (59%), Gaps = 16/534 (2%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRL------PIKDTASWN 74
           G ++ A+ LFD++  PD+V+YN ++S   +N   V ++ + F+ L      P   T    
Sbjct: 270 GDMECARHLFDRMEGPDLVTYNALISGYSINGM-VGSSVELFKELVGMGLRPSSSTLVAL 328

Query: 75  TMISGFVQKKNMAKARDLFL--AMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSV 132
             +      + +A      +  A  + N+   +A+ + Y     +D A   F   P K++
Sbjct: 329 IPVHSPFGHEPLAGCLHAHVVKAGLDANAPVSTALTTLYCRFNDMDSARRAFDAMPEKTM 388

Query: 133 VAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGK 192
            +W AMISGY      +N   E  + L + M  L +RPN  ++SS L  C+ L +L LGK
Sbjct: 389 ESWNAMISGY-----AQNGLTEMAVALFQQMQALNVRPNPLTISSALSACAQLGALSLGK 443

Query: 193 QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHG 252
            VH+++    L  +   +T LI MY KCG + +A  +F  +  K+VV+WN MISGY  HG
Sbjct: 444 WVHKIIANEKLELNVYVMTALIDMYVKCGSIAEARCIFDSMDNKNVVSWNVMISGYGLHG 503

Query: 253 KGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY 312
           +G +AL+L+  M D  + P S TF+++L AC+H GLV  G   F SM +DYGI    +H 
Sbjct: 504 QGAEALKLYKDMMDAHLHPTSSTFLSVLYACSHGGLVKEGTTVFRSMTSDYGITPGIEHC 563

Query: 313 TCMVDLLGRAGKLVEAVDLIKKMPFKP-QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLN 371
           TCMVDLLGRAG+L EA +LI + P     P I+G LL AC VHK  DLA+ A+  LF L 
Sbjct: 564 TCMVDLLGRAGQLKEAFELISEFPKSAVGPGIWGALLGACMVHKDGDLAKLASQKLFELE 623

Query: 372 PANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRV 431
           P N  G YV L+N+Y + K++ + A +R   K   +VK PG + IE+G   H F +GDR 
Sbjct: 624 PENT-GYYVLLSNLYTSKKQYSEAAVVRQEAKSRKLVKTPGCTLIEIGDRPHVFMAGDRA 682

Query: 432 HPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVP 491
           HP+  +I+  L++L  +M  AGY PD E AL+ V EE KE ++  HSEKLAIAFGL+   
Sbjct: 683 HPQSDAIYLYLEKLTAKMIEAGYRPDTEAALYDVEEEEKEHMVKVHSEKLAIAFGLLNTE 742

Query: 492 LGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
            GT IR+ KNLRVC DCH ATK IS + +R I+VRD +RFHHF+DG CSCGDYW
Sbjct: 743 PGTEIRIIKNLRVCLDCHNATKIISKVTQRLIVVRDASRFHHFRDGVCSCGDYW 796



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 92/330 (27%), Positives = 167/330 (50%), Gaps = 24/330 (7%)

Query: 16  FAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP-----IKDT 70
           F   RG   DA+++FD +P PD V +N +L+  L  S+    A + F R+        D+
Sbjct: 169 FTLSRGN--DARKVFDAVPSPDTVLWNTLLAG-LSGSE----ALEAFVRMAGAGSVRPDS 221

Query: 71  ASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSW-----SAMISGYIECGQLDKAVELFK 125
            +  +++    +  N    R +  A  EK  ++      + +IS Y +CG ++ A  LF 
Sbjct: 222 TTLASVLPAAAEVANTTMGRCVH-AFGEKCGLAQHEHVVTGLISLYAKCGDMECARHLFD 280

Query: 126 VAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHL 185
                 +V + A+ISGY   G V +S     ++L + ++G+G+RP++S+L +++   S  
Sbjct: 281 RMEGPDLVTYNALISGYSINGMVGSS-----VELFKELVGMGLRPSSSTLVALIPVHSPF 335

Query: 186 SSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMI 245
               L   +H  V K+ L  +    T L ++YC+  D++ A + F  +  K + +WNAMI
Sbjct: 336 GHEPLAGCLHAHVVKAGLDANAPVSTALTTLYCRFNDMDSARRAFDAMPEKTMESWNAMI 395

Query: 246 SGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGI 305
           SGYAQ+G  E A+ LF +M+   ++P+ +T  + L AC   G + LG ++   ++ +  +
Sbjct: 396 SGYAQNGLTEMAVALFQQMQALNVRPNPLTISSALSACAQLGALSLG-KWVHKIIANEKL 454

Query: 306 AAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335
                  T ++D+  + G + EA  +   M
Sbjct: 455 ELNVYVMTALIDMYVKCGSIAEARCIFDSM 484



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 73/301 (24%), Positives = 127/301 (42%), Gaps = 71/301 (23%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKI------PQPDVVSYNIMLSCILLNSDD 54
           M  KT  +WN++++G+A Q G  + A  LF ++      P P  +S + + +C  L +  
Sbjct: 383 MPEKTMESWNAMISGYA-QNGLTEMAVALFQQMQALNVRPNPLTIS-SALSACAQLGA-- 438

Query: 55  VVAAFDFFQRLPIKDTASWN-----TMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMIS 109
            ++   +  ++   +    N      +I  +V+  ++A+AR +F +M  KN VSW+ MIS
Sbjct: 439 -LSLGKWVHKIIANEKLELNVYVMTALIDMYVKCGSIAEARCIFDSMDNKNVVSWNVMIS 497

Query: 110 GYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIR 169
           GY   GQ                                      + LKL + M+   + 
Sbjct: 498 GYGLHGQ------------------------------------GAEALKLYKDMMDAHLH 521

Query: 170 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKC--------G 221
           P +S+  SVL  CSH   ++ G      VF+S        +TP I  +C C        G
Sbjct: 522 PTSSTFLSVLYACSHGGLVKEGTT----VFRS--MTSDYGITPGIE-HCTCMVDLLGRAG 574

Query: 222 DLEDACKLFLEIQRKDV--VTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVAL 279
            L++A +L  E  +  V    W A++     H  G+ A     K+ +  ++P++  +  L
Sbjct: 575 QLKEAFELISEFPKSAVGPGIWGALLGACMVHKDGDLAKLASQKLFE--LEPENTGYYVL 632

Query: 280 L 280
           L
Sbjct: 633 L 633



 Score = 47.8 bits (112), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 68/164 (41%), Gaps = 7/164 (4%)

Query: 192 KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQH 251
           + +H L   S    D    + L  +Y       DA K+F  +   D V WN +++G +  
Sbjct: 143 RPLHALAVASGFAADNFVASALAKLYFTLSRGNDARKVFDAVPSPDTVLWNTLLAGLS-- 200

Query: 252 GKGEKALRLFDKMKDEG-MKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPD 310
             G +AL  F +M   G ++PDS T  ++L A        +G +   +     G+A    
Sbjct: 201 --GSEALEAFVRMAGAGSVRPDSTTLASVLPAAAEVANTTMG-RCVHAFGEKCGLAQHEH 257

Query: 311 HYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVH 354
             T ++ L  + G +  A  L  +M   P    +  L+S   ++
Sbjct: 258 VVTGLISLYAKCGDMECARHLFDRME-GPDLVTYNALISGYSIN 300


>gi|115443695|ref|NP_001045627.1| Os02g0106300 [Oryza sativa Japonica Group]
 gi|50252103|dbj|BAD28089.1| putative pentatricopeptide (PPR) repeat-containing protein-like
           protein [Oryza sativa Japonica Group]
 gi|113535158|dbj|BAF07541.1| Os02g0106300 [Oryza sativa Japonica Group]
 gi|215766741|dbj|BAG98969.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 751

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 224/575 (38%), Positives = 327/575 (56%), Gaps = 46/575 (8%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
            S L     + G ++DA+ +F ++    VV YN +++  LL    +  A   FQ +  +D
Sbjct: 184 GSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLITG-LLRCKMIEDAKGLFQLMVDRD 242

Query: 70  TASWNTMISGFVQKKNMAKARDLFLAMP-------------------------------- 97
           + +W TM++G  Q     +A D+F  M                                 
Sbjct: 243 SITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHA 302

Query: 98  -------EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVEN 150
                  E N    SA++  Y +C  +  A  +F+    +++++WTAMI      GY +N
Sbjct: 303 YITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRNIISWTAMI-----VGYGQN 357

Query: 151 SWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTAL 210
           + +E+ ++    M   GI+P+  +L SV+  C++L+SL+ G Q H L   S L +  T  
Sbjct: 358 ACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMRYITVS 417

Query: 211 TPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMK 270
             L+++Y KCG +EDA +LF E+   D V+W A+++GYAQ GK ++ + LF+KM   G+K
Sbjct: 418 NALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKETIDLFEKMLANGLK 477

Query: 271 PDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVD 330
           PD +TF+ +L AC+ AGLV+ G  YFDSM  D+GI    DHYTCM+DL  R+G+  EA +
Sbjct: 478 PDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDHGIVPIDDHYTCMIDLYSRSGRFKEAEE 537

Query: 331 LIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMK 390
            IK+MP  P    + TLLS+CR+   +++ ++AA NL   +P N A  YV L +++AA  
Sbjct: 538 FIKQMPHSPDAFGWATLLSSCRLRGNMEIGKWAAENLLETDPQNPAS-YVLLCSMHAAKG 596

Query: 391 KWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMK 450
           +W +VA +R  M++  V K PG SWI+    VH F + D+ HP    I+EKL+ L  +M 
Sbjct: 597 QWTEVAHLRRGMRDRQVKKEPGCSWIKYKNKVHIFSADDQSHPFSSRIYEKLEWLNSKMA 656

Query: 451 LAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHR 510
             GY PD+   LH V +  K  ++  HSEKLAIAFGLI VP   PIR+ KNLRVC DCH 
Sbjct: 657 EEGYKPDVSSVLHDVADADKVHMISHHSEKLAIAFGLIFVPQEMPIRIVKNLRVCVDCHN 716

Query: 511 ATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           ATK+IS I  R+I+VRD  RFH F DGTCSCGD+W
Sbjct: 717 ATKFISKITGRDILVRDAVRFHKFSDGTCSCGDFW 751



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 106/441 (24%), Positives = 193/441 (43%), Gaps = 101/441 (22%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
           N +L  +AK  G+L  A+ +FD++P P++ + N +LS  L +S  V      F  +P +D
Sbjct: 52  NHLLTAYAKS-GRLARARRVFDEMPDPNLFTRNALLSA-LAHSRLVPDMERLFASMPERD 109

Query: 70  TASWNTMISGFVQKKNMAKARDLFLAMPEKNSV-----SWSAMI---------------- 108
             S+N +I+GF    + A++  L+ A+  + SV     + SAMI                
Sbjct: 110 AVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVASALSDRALGHSVH 169

Query: 109 -------------------SGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVE 149
                                Y + G +  A  +F+    K+VV +  +I+G ++   +E
Sbjct: 170 CQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLITGLLRCKMIE 229

Query: 150 N--------------SW-------AEDGLKL-----LRMMIGLGIRPNASSLSSVLLGCS 183
           +              +W        ++GL+L      R M   G+  +  +  S+L  C 
Sbjct: 230 DAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSILTACG 289

Query: 184 HLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNA 243
            L++L+ GKQ+H  + ++    +    + L+ MY KC  +  A  +F  +  +++++W A
Sbjct: 290 ALAALEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRNIISWTA 349

Query: 244 MISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYF------- 296
           MI GY Q+   E+A+R F +M+ +G+KPD  T  +++ +C +   ++ G Q+        
Sbjct: 350 MIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSG 409

Query: 297 --------DSMVNDYGIAAKPD---------------HYTCMVDLLGRAGKLVEAVDLIK 333
                   +++V  YG     +                +T +V    + GK  E +DL +
Sbjct: 410 LMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKETIDLFE 469

Query: 334 KM---PFKPQPAIFGTLLSAC 351
           KM     KP    F  +LSAC
Sbjct: 470 KMLANGLKPDGVTFIGVLSAC 490



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 69/266 (25%), Positives = 120/266 (45%), Gaps = 40/266 (15%)

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
           F Q  P   T   N +++ + +   +A+AR +F  MP+ N  + +A++S       +   
Sbjct: 42  FLQAPP---TFLLNHLLTAYAKSGRLARARRVFDEMPDPNLFTRNALLSALAHSRLVPDM 98

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI-GLGIRPNASSLSSVL 179
             LF   P +  V++ A+I+G+   G    S     ++L R ++    +RP   +LS+++
Sbjct: 99  ERLFASMPERDAVSYNALITGFSSTGSPARS-----VQLYRALLREESVRPTRITLSAMI 153

Query: 180 LGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK--- 236
           +  S LS   LG  VH  V +          +PL+ MY K G + DA ++F E++ K   
Sbjct: 154 MVASALSDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVV 213

Query: 237 ----------------------------DVVTWNAMISGYAQHGKGEKALRLFDKMKDEG 268
                                       D +TW  M++G  Q+G   +AL +F +M+ EG
Sbjct: 214 MYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEG 273

Query: 269 MKPDSITFVALLLACNHAGLVDLGIQ 294
           +  D  TF ++L AC     ++ G Q
Sbjct: 274 VGIDQYTFGSILTACGALAALEEGKQ 299



 Score = 42.0 bits (97), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 41/202 (20%), Positives = 84/202 (41%), Gaps = 43/202 (21%)

Query: 186 SSLQLGKQVHQLVFKSPL-CKDTTALTPLISMYCKCGDLE-------------------- 224
           + +++   VH L+ K+ L    T  L  L++ Y K G L                     
Sbjct: 26  TGVRVAGAVHCLILKTFLQAPPTFLLNHLLTAYAKSGRLARARRVFDEMPDPNLFTRNAL 85

Query: 225 -----------DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDK-MKDEGMKPD 272
                      D  +LF  +  +D V++NA+I+G++  G   ++++L+   +++E ++P 
Sbjct: 86  LSALAHSRLVPDMERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPT 145

Query: 273 SITFVALLLACNHAGLVDLG----IQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEA 328
            IT  A+++  +      LG     Q        Y     P     +VD+  + G + +A
Sbjct: 146 RITLSAMIMVASALSDRALGHSVHCQVLRLGFGAYAFVGSP-----LVDMYAKMGLIRDA 200

Query: 329 VDLIKKMPFKPQPAIFGTLLSA 350
             + ++M  K    ++ TL++ 
Sbjct: 201 RRVFQEMEAK-TVVMYNTLITG 221


>gi|242062548|ref|XP_002452563.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
 gi|241932394|gb|EES05539.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
          Length = 745

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 223/560 (39%), Positives = 325/560 (58%), Gaps = 46/560 (8%)

Query: 25  DAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKK 84
           DA+  FD++   +VV YN M++  LL    V  A   F+ +  +D+ +W TM++GF Q  
Sbjct: 193 DAKRAFDEVDSKNVVMYNTMITG-LLRCKMVEEARRLFEVMTDRDSITWTTMVTGFTQNG 251

Query: 85  NMAKARDLFLAMP---------------------------------------EKNSVSWS 105
             ++A ++F  M                                        + N    S
Sbjct: 252 LESEALEIFRRMRFQGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRTRYDDNVFVGS 311

Query: 106 AMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIG 165
           A++  Y +C  +  A  +F+    K++++WTA+I      GY +N  +E+ +++   M  
Sbjct: 312 ALVDMYSKCRSIKLAETVFRRMTCKNIISWTALI-----VGYGQNGCSEEAVRVFSEMQR 366

Query: 166 LGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLED 225
            GI P+  +L SV+  C++L+SL+ G Q H L   S L    T    L+++Y KCG +ED
Sbjct: 367 DGIDPDDYTLGSVISSCANLASLEEGAQFHCLALVSGLMHYITVSNALVTLYGKCGSIED 426

Query: 226 ACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNH 285
           A +LF E+   D V+W A++SGYAQ G+ ++ + LF+KM  +G+KPD +TF+ +L AC+ 
Sbjct: 427 AHRLFDEMSFHDQVSWTALVSGYAQFGRAKETIDLFEKMLAKGVKPDGVTFIGVLSACSR 486

Query: 286 AGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFG 345
           AG V+ G  YF SM  D+GI    DHYTCM+DL  R+GKL EA + IK+MP  P    +G
Sbjct: 487 AGFVEKGRSYFHSMQKDHGIVPIDDHYTCMIDLYSRSGKLKEAEEFIKQMPMHPDAIGWG 546

Query: 346 TLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKEN 405
           TLLSACR+   +++ ++AA NL  ++P N A  YV L +++AA  +W++VA++R  M++ 
Sbjct: 547 TLLSACRLRGDMEIGKWAAENLLEIDPQNPAS-YVLLCSMHAAKGQWNEVAQLRRGMRDR 605

Query: 406 NVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAV 465
            V K PG SWI+    VH F + D+ HP    I+EKL+ L  +M   GY PD+   LH V
Sbjct: 606 QVKKEPGCSWIKYKNKVHIFSADDQSHPCSKGIYEKLEWLNSKMLEEGYKPDVSSVLHDV 665

Query: 466 GEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIV 525
            +  K  ++  HSEKLAIAFGLI VP   PIR+ KNLRVC DCH ATK+IS I  R+I+V
Sbjct: 666 ADTDKVHMVSHHSEKLAIAFGLIFVPQEMPIRIVKNLRVCVDCHNATKFISKITGRDILV 725

Query: 526 RDTTRFHHFKDGTCSCGDYW 545
           RD  RFH F DG CSCGD+W
Sbjct: 726 RDAVRFHKFSDGVCSCGDFW 745



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 92/398 (23%), Positives = 174/398 (43%), Gaps = 70/398 (17%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
           N +L  + K  G+   A+ +FD +P P++ +YN +LS  L ++  +      F  +  +D
Sbjct: 45  NHLLTAYGKA-GRHARARRVFDAMPHPNLFTYNALLS-TLAHARLLSDMEALFASMTQRD 102

Query: 70  TASWNTMISGFVQKKNMAKARDLFLAM--------PEK---------------------- 99
             S+N +I+GF    + A+A  ++LA+        P +                      
Sbjct: 103 IVSYNAVIAGFSGGGSHAQAVRVYLALLQADSSVRPSRITMSTMVMAASALGDRALGKQF 162

Query: 100 -----------NSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMK---- 144
                      N+   S ++  Y +   +  A   F     K+VV +  MI+G ++    
Sbjct: 163 HCQILRLGFGANAFVGSPLVDMYAKMSLVGDAKRAFDEVDSKNVVMYNTMITGLLRCKMV 222

Query: 145 ----------------------FGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGC 182
                                  G+ +N    + L++ R M   GI  +  +  S+L  C
Sbjct: 223 EEARRLFEVMTDRDSITWTTMVTGFTQNGLESEALEIFRRMRFQGIAIDQYTFGSILTAC 282

Query: 183 SHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWN 242
             LS+L+ GKQ+H  + ++    +    + L+ MY KC  ++ A  +F  +  K++++W 
Sbjct: 283 GALSALEQGKQIHAYIIRTRYDDNVFVGSALVDMYSKCRSIKLAETVFRRMTCKNIISWT 342

Query: 243 AMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVND 302
           A+I GY Q+G  E+A+R+F +M+ +G+ PD  T  +++ +C +   ++ G Q F  +   
Sbjct: 343 ALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDYTLGSVISSCANLASLEEGAQ-FHCLALV 401

Query: 303 YGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQ 340
            G+         +V L G+ G + +A  L  +M F  Q
Sbjct: 402 SGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQ 439


>gi|15239979|ref|NP_201453.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171133|sp|Q9FJY7.1|PP449_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g66520
 gi|10177533|dbj|BAB10928.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332010841|gb|AED98224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 620

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 224/547 (40%), Positives = 328/547 (59%), Gaps = 13/547 (2%)

Query: 6   TVNWNSVLAGFA----KQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNS-DDVVAAFD 60
           T  WN ++ GF+     +R  L   + L    P       +++ +C  L++ ++      
Sbjct: 80  TFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAFEETTQIHA 139

Query: 61  FFQRLPIK-DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDK 119
              +L  + D  + N++I+ +    N   A  LF  +PE + VSW+++I GY++ G++D 
Sbjct: 140 QITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAGKMDI 199

Query: 120 AVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVL 179
           A+ LF+    K+ ++WT MISGY     V+    ++ L+L   M    + P+  SL++ L
Sbjct: 200 ALTLFRKMAEKNAISWTTMISGY-----VQADMNKEALQLFHEMQNSDVEPDNVSLANAL 254

Query: 180 LGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVV 239
             C+ L +L+ GK +H  + K+ +  D+     LI MY KCG++E+A ++F  I++K V 
Sbjct: 255 SACAQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQ 314

Query: 240 TWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSM 299
            W A+ISGYA HG G +A+  F +M+  G+KP+ ITF A+L AC++ GLV+ G   F SM
Sbjct: 315 AWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLIFYSM 374

Query: 300 VNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDL 359
             DY +    +HY C+VDLLGRAG L EA   I++MP KP   I+G LL ACR+HK ++L
Sbjct: 375 ERDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNIEL 434

Query: 360 AEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVG 419
            E     L  ++P +  G YV  ANI+A  KKWD  A  R  MKE  V K+PG S I + 
Sbjct: 435 GEEIGEILIAIDPYH-GGRYVHKANIHAMDKKWDKAAETRRLMKEQGVAKVPGCSTISLE 493

Query: 420 TVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDL-EFALHAVGEEVKEQLLLFHS 478
              HEF +GDR HPE+  I  K + + ++++  GYVP+L E  L  V ++ +E ++  HS
Sbjct: 494 GTTHEFLAGDRSHPEIEKIQSKWRIMRRKLEENGYVPELEEMLLDLVDDDEREAIVHQHS 553

Query: 479 EKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGT 538
           EKLAI +GLIK   GT IR+ KNLRVC DCH+ TK IS I KR+I++RD TRFHHF+DG 
Sbjct: 554 EKLAITYGLIKTKPGTIIRIMKNLRVCKDCHKVTKLISKIYKRDIVMRDRTRFHHFRDGK 613

Query: 539 CSCGDYW 545
           CSCGDYW
Sbjct: 614 CSCGDYW 620



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 67/261 (25%), Positives = 109/261 (41%), Gaps = 48/261 (18%)

Query: 165 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 224
              +  N     S L  CS    L   KQ+H  + K+ L +D+ A+T  +S +C      
Sbjct: 7   SFSLEHNLYETMSCLQRCSKQEEL---KQIHARMLKTGLMQDSYAITKFLS-FCISSTSS 62

Query: 225 D----ACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 280
           D    A  +F    R D   WN MI G++   + E++L L+ +M       ++ TF +LL
Sbjct: 63  DFLPYAQIVFDGFDRPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLL 122

Query: 281 LACN-----------HAGLVDLG----IQYFDSMVNDYGIAA-------------KPD-- 310
            AC+           HA +  LG    +   +S++N Y +               +PD  
Sbjct: 123 KACSNLSAFEETTQIHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDV 182

Query: 311 HYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLD---LAEFAAMNL 367
            +  ++    +AGK+  A+ L +KM  K   AI  T + +  V   ++   L  F  M  
Sbjct: 183 SWNSVIKGYVKAGKMDIALTLFRKMAEK--NAISWTTMISGYVQADMNKEALQLFHEMQN 240

Query: 368 FNLNPANAAGCYVQLANIYAA 388
            ++ P N     V LAN  +A
Sbjct: 241 SDVEPDN-----VSLANALSA 256


>gi|116792842|gb|ABK26521.1| unknown [Picea sitchensis]
          Length = 370

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 201/371 (54%), Positives = 259/371 (69%), Gaps = 1/371 (0%)

Query: 175 LSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ 234
           ++ +L  C+ +++L+ GKQVH  + K     D +    L+ MY KCG +EDA ++F ++ 
Sbjct: 1   MAGILRACASVAALEQGKQVHADIIKIGFELDVSVSNGLVDMYGKCGRIEDAQEVFSKLL 60

Query: 235 RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ 294
             DV +WNAMISG AQHG G++A+ LF++M   G+KP+ ITFV +L  C+HAGLVD G  
Sbjct: 61  EPDVASWNAMISGLAQHGCGKEAVLLFEQMLQTGVKPNQITFVVVLSGCSHAGLVDEGRN 120

Query: 295 YFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVH 354
           YFDSM  D+GI+ K +HY+CMVDL GRAG L EA++ I +MP +P  +++G+LL ACRVH
Sbjct: 121 YFDSMTRDHGISPKAEHYSCMVDLFGRAGCLDEALNFINQMPVEPNASVWGSLLGACRVH 180

Query: 355 KRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYS 414
             ++LAE A   L  L P N  G YV L+NIYAA  +WDD  ++R  MK+ +V K PG S
Sbjct: 181 GNIELAERAVEQLIELTPENP-GTYVLLSNIYAAAGRWDDAGKVRKMMKDRSVKKEPGCS 239

Query: 415 WIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLL 474
           WIEV   VH F  GD  HP++  I+E L+ L  +MK AGY+P+  F LH V EE KE +L
Sbjct: 240 WIEVQNKVHPFIVGDSSHPQIEEIYETLETLTLQMKAAGYIPNTNFVLHDVEEEQKEWIL 299

Query: 475 LFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHF 534
             HSEKLAIAFG+I  P GT IRV KNLRVCGDCH ATK+IS I  REI++RDT RFHHF
Sbjct: 300 GHHSEKLAIAFGIISTPPGTTIRVVKNLRVCGDCHTATKFISRIVSREIVLRDTHRFHHF 359

Query: 535 KDGTCSCGDYW 545
           KDG CSCGDYW
Sbjct: 360 KDGQCSCGDYW 370



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/166 (22%), Positives = 76/166 (45%), Gaps = 8/166 (4%)

Query: 101 SVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLL 160
           SVS + ++  Y +CG+++ A E+F       V +W AMISG  + G       ++ + L 
Sbjct: 34  SVS-NGLVDMYGKCGRIEDAQEVFSKLLEPDVASWNAMISGLAQHGC-----GKEAVLLF 87

Query: 161 RMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ-VHQLVFKSPLCKDTTALTPLISMYCK 219
             M+  G++PN  +   VL GCSH   +  G+     +     +       + ++ ++ +
Sbjct: 88  EQMLQTGVKPNQITFVVVLSGCSHAGLVDEGRNYFDSMTRDHGISPKAEHYSCMVDLFGR 147

Query: 220 CGDLEDACKLFLEIQ-RKDVVTWNAMISGYAQHGKGEKALRLFDKM 264
            G L++A     ++    +   W +++     HG  E A R  +++
Sbjct: 148 AGCLDEALNFINQMPVEPNASVWGSLLGACRVHGNIELAERAVEQL 193



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 52/218 (23%), Positives = 91/218 (41%), Gaps = 50/218 (22%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPI---KDTASWNTMI 77
           G+++DAQE+F K+ +PDV S+N M+S +  +     A   F Q L      +  ++  ++
Sbjct: 47  GRIEDAQEVFSKLLEPDVASWNAMISGLAQHGCGKEAVLLFEQMLQTGVKPNQITFVVVL 106

Query: 78  SGFVQKKNMAKARDLFLAMPEKNSVS-----WSAMISGYIECGQLDKAVELFKVAPVKSV 132
           SG      + + R+ F +M   + +S     +S M+  +   G LD+A+      PV+  
Sbjct: 107 SGCSHAGLVDEGRNYFDSMTRDHGISPKAEHYSCMVDLFGRAGCLDEALNFINQMPVE-- 164

Query: 133 VAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGK 192
                                                PNAS   S+L  C    +++L +
Sbjct: 165 -------------------------------------PNASVWGSLLGACRVHGNIELAE 187

Query: 193 Q-VHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 229
           + V QL+  +P    T  L  L ++Y   G  +DA K+
Sbjct: 188 RAVEQLIELTPENPGTYVL--LSNIYAAAGRWDDAGKV 223


>gi|15223802|ref|NP_173449.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806503|sp|Q9LNU6.2|PPR53_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g20230
 gi|332191832|gb|AEE29953.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 760

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 221/551 (40%), Positives = 336/551 (60%), Gaps = 20/551 (3%)

Query: 7   VNWNSVLAGFAKQRGKLKDAQELFDKIPQ----PDVVSYNIMLSCI----LLNSDDVVAA 58
           V+WN +L+GF +  G  K+A  +F KI      PD V+ + +L  +    +LN   ++  
Sbjct: 218 VSWNGILSGFNRS-GYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIHG 276

Query: 59  FDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLD 118
           +   Q L +KD    + MI  + +  ++     LF       +   +A I+G    G +D
Sbjct: 277 YVIKQGL-LKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVD 335

Query: 119 KAVELFKVAPVKS----VVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASS 174
           KA+E+F++   ++    VV+WT++I+G       +N    + L+L R M   G++PN  +
Sbjct: 336 KALEMFELFKEQTMELNVVSWTSIIAGC-----AQNGKDIEALELFREMQVAGVKPNHVT 390

Query: 175 LSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ 234
           + S+L  C ++++L  G+  H    +  L  +    + LI MY KCG +  +  +F  + 
Sbjct: 391 IPSMLPACGNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMP 450

Query: 235 RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ 294
            K++V WN++++G++ HGK ++ + +F+ +    +KPD I+F +LL AC   GL D G +
Sbjct: 451 TKNLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWK 510

Query: 295 YFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVH 354
           YF  M  +YGI  + +HY+CMV+LLGRAGKL EA DLIK+MPF+P   ++G LL++CR+ 
Sbjct: 511 YFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQ 570

Query: 355 KRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYS 414
             +DLAE AA  LF+L P N  G YV L+NIYAA   W +V  IR  M+   + K PG S
Sbjct: 571 NNVDLAEIAAEKLFHLEPENP-GTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCS 629

Query: 415 WIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLL 474
           WI+V   V+   +GD+ HP++  I EK+ E+ K M+ +G+ P+L+FALH V E+ +EQ+L
Sbjct: 630 WIQVKNRVYTLLAGDKSHPQIDQITEKMDEISKEMRKSGHRPNLDFALHDVEEQEQEQML 689

Query: 475 LFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHF 534
             HSEKLA+ FGL+  P GTP++V KNLR+CGDCH   K+IS+   REI +RDT RFHHF
Sbjct: 690 WGHSEKLAVVFGLLNTPDGTPLQVIKNLRICGDCHAVIKFISSYAGREIFIRDTNRFHHF 749

Query: 535 KDGTCSCGDYW 545
           KDG CSCGD+W
Sbjct: 750 KDGICSCGDFW 760



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 51/205 (24%), Positives = 100/205 (48%), Gaps = 6/205 (2%)

Query: 83  KKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGY 142
           K   A AR L         +S + +I+ Y      + A  + +  P  ++ +++++I   
Sbjct: 33  KTTQAHARILKSGAQNDGYIS-AKLIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYAL 91

Query: 143 MKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSP 202
            K      S     + +   M   G+ P++  L ++   C+ LS+ ++GKQ+H +   S 
Sbjct: 92  TKAKLFTQS-----IGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSG 146

Query: 203 LCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFD 262
           L  D      +  MY +CG + DA K+F  +  KDVVT +A++  YA+ G  E+ +R+  
Sbjct: 147 LDMDAFVQGSMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILS 206

Query: 263 KMKDEGMKPDSITFVALLLACNHAG 287
           +M+  G++ + +++  +L   N +G
Sbjct: 207 EMESSGIEANIVSWNGILSGFNRSG 231


>gi|356552027|ref|XP_003544373.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Glycine max]
          Length = 986

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 231/592 (39%), Positives = 341/592 (57%), Gaps = 64/592 (10%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK- 68
           N+V+  +AK  GK+++A ++F ++   DVVS+N M++     +  +  A   F+R+  + 
Sbjct: 403 NAVVDMYAKC-GKMEEANKVFQRMKFKDVVSWNAMVTG-YSQAGRLEHALSLFERMTEEN 460

Query: 69  ---DTASWNTMISGFVQKKNMAKARDLFLAMPEKNS--------------VSWSAMISG- 110
              D  +W  +I+G+ Q+    +A D+F  M +  S              VS  A++ G 
Sbjct: 461 IELDVVTWTAVITGYAQRGQGCEALDVFRQMCDCGSRPNVVTLVSLLSACVSVGALLHGK 520

Query: 111 --------------------------------YIECGQLDKAVELF-KVAPV-KSVVAWT 136
                                           Y +C   + A ++F  V+P  + VV WT
Sbjct: 521 ETHCYAIKFILNLDGPDPGADDLKVINGLIDMYAKCQSTEVARKMFDSVSPKDRDVVTWT 580

Query: 137 AMISGYMKFGYVENSWAEDGLKLLRMMIGL--GIRPNASSLSSVLLGCSHLSSLQLGKQV 194
            MI GY + G   N+     L+L   M  +   I+PN  +LS  L+ C+ L++L+ G+QV
Sbjct: 581 VMIGGYAQHGDANNA-----LQLFSGMFKMDKSIKPNDFTLSCALVACARLAALRFGRQV 635

Query: 195 HQLVFKSPLCKDTTALTP-LISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGK 253
           H  V ++        +   LI MY K GD++ A  +F  + +++ V+W ++++GY  HG+
Sbjct: 636 HAYVLRNFYGSVMLFVANCLIDMYSKSGDVDTAQIVFDNMPQRNAVSWTSLMTGYGMHGR 695

Query: 254 GEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYT 313
           GE ALR+FD+M+   + PD ITF+ +L AC+H+G+VD GI +F+ M  D+G+   P+HY 
Sbjct: 696 GEDALRVFDEMRKVPLVPDGITFLVVLYACSHSGMVDHGINFFNRMSKDFGVDPGPEHYA 755

Query: 314 CMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPA 373
           CMVDL GRAG+L EA+ LI +MP +P P ++  LLSACR+H  ++L EFAA  L  L   
Sbjct: 756 CMVDLWGRAGRLGEAMKLINEMPMEPTPVVWVALLSACRLHSNVELGEFAANRLLELESG 815

Query: 374 NAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHP 433
           N  G Y  L+NIYA  ++W DVARIR +MK   + K PG SWI+    V  F  GDR HP
Sbjct: 816 ND-GSYTLLSNIYANARRWKDVARIRYTMKRTGIKKRPGCSWIQGRKGVATFYVGDRSHP 874

Query: 434 ELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLG 493
           +   I+E L +L +R+K  GYVP   FALH V +E K  LL  HSEKLA+A+G++ +   
Sbjct: 875 QSQQIYETLADLIQRIKAIGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTLHPR 934

Query: 494 TPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
            PIR+ KNLR+CGDCH A  YIS I + EII+RD++RFHHFK+G+CSC  YW
Sbjct: 935 APIRITKNLRICGDCHSAITYISKIIEHEIILRDSSRFHHFKNGSCSCKGYW 986



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 113/379 (29%), Positives = 179/379 (47%), Gaps = 33/379 (8%)

Query: 3   VKTTVNWNSVLAGFAKQRGKLKDAQELFDKIP-----QPDVVSY-NIMLSCILLNSD--- 53
           ++  V+WNSV++ +         A  LF K+       PDV+S  NI+ +C  L +    
Sbjct: 325 IQDLVSWNSVVSAYM-WASDANTALALFHKMTTRHLMSPDVISLVNILPACASLAASLRG 383

Query: 54  DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE 113
             V  F     L + D    N ++  + +   M +A  +F  M  K+ VSW+AM++GY +
Sbjct: 384 RQVHGFSIRSGL-VDDVFVGNAVVDMYAKCGKMEEANKVFQRMKFKDVVSWNAMVTGYSQ 442

Query: 114 CGQLDKAVELFKVAPVKS----VVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIR 169
            G+L+ A+ LF+    ++    VV WTA+I+GY + G        + L + R M   G R
Sbjct: 443 AGRLEHALSLFERMTEENIELDVVTWTAVITGYAQRGQ-----GCEALDVFRQMCDCGSR 497

Query: 170 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFK--------SPLCKDTTALTPLISMYCKCG 221
           PN  +L S+L  C  + +L  GK+ H    K         P   D   +  LI MY KC 
Sbjct: 498 PNVVTLVSLLSACVSVGALLHGKETHCYAIKFILNLDGPDPGADDLKVINGLIDMYAKCQ 557

Query: 222 DLEDACKLFLEIQRK--DVVTWNAMISGYAQHGKGEKALRLFDKM--KDEGMKPDSITFV 277
             E A K+F  +  K  DVVTW  MI GYAQHG    AL+LF  M   D+ +KP+  T  
Sbjct: 558 STEVARKMFDSVSPKDRDVVTWTVMIGGYAQHGDANNALQLFSGMFKMDKSIKPNDFTLS 617

Query: 278 ALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPF 337
             L+AC     +  G Q    ++ ++  +       C++D+  ++G +  A  +   MP 
Sbjct: 618 CALVACARLAALRFGRQVHAYVLRNFYGSVMLFVANCLIDMYSKSGDVDTAQIVFDNMP- 676

Query: 338 KPQPAIFGTLLSACRVHKR 356
           +     + +L++   +H R
Sbjct: 677 QRNAVSWTSLMTGYGMHGR 695



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 62/183 (33%), Positives = 105/183 (57%), Gaps = 15/183 (8%)

Query: 105 SAMISGYIECGQLDKAVELFK---VAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLR 161
           +A++S Y +CG L  A  +F       ++ +V+W +++S YM        WA D    L 
Sbjct: 298 NAVVSMYGKCGALRHAHNMFDDLCHRGIQDLVSWNSVVSAYM--------WASDANTALA 349

Query: 162 MMIGLGIR----PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMY 217
           +   +  R    P+  SL ++L  C+ L++   G+QVH    +S L  D      ++ MY
Sbjct: 350 LFHKMTTRHLMSPDVISLVNILPACASLAASLRGRQVHGFSIRSGLVDDVFVGNAVVDMY 409

Query: 218 CKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFV 277
            KCG +E+A K+F  ++ KDVV+WNAM++GY+Q G+ E AL LF++M +E ++ D +T+ 
Sbjct: 410 AKCGKMEEANKVFQRMKFKDVVSWNAMVTGYSQAGRLEHALSLFERMTEENIELDVVTWT 469

Query: 278 ALL 280
           A++
Sbjct: 470 AVI 472



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 71/243 (29%), Positives = 107/243 (44%), Gaps = 22/243 (9%)

Query: 107 MISGYIECGQLDKAVELFKVAPVK--SVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI 164
           +I  YI       A+ L +  P    SV  W  +I   +  G        D   L R M 
Sbjct: 197 LIGTYIASNSTAYAILLLERLPPSPSSVFWWNQLIRRALHLGS-----PRDVFTLYRQMK 251

Query: 165 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 224
            LG  P+  +   V   C++LSSL LG  +H  V +S    +      ++SMY KCG L 
Sbjct: 252 SLGWTPDHYTFPFVFKACANLSSLSLGASLHATVSRSGFASNVFVCNAVVSMYGKCGALR 311

Query: 225 DACKLFLEIQRK---DVVTWNAMISGYAQHGKGEKALRLFDKMKDEG-MKPDSITFVALL 280
            A  +F ++  +   D+V+WN+++S Y        AL LF KM     M PD I+ V +L
Sbjct: 312 HAHNMFDDLCHRGIQDLVSWNSVVSAYMWASDANTALALFHKMTTRHLMSPDVISLVNIL 371

Query: 281 LAC-----NHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335
            AC     +  G    G      +V+D  +         +VD+  + GK+ EA  + ++M
Sbjct: 372 PACASLAASLRGRQVHGFSIRSGLVDDVFVG------NAVVDMYAKCGKMEEANKVFQRM 425

Query: 336 PFK 338
            FK
Sbjct: 426 KFK 428



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 65/300 (21%), Positives = 121/300 (40%), Gaps = 82/300 (27%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPD--VVSYNIMLSCILLNSDDVVAAFDF 61
           +  V W  ++ G+A Q G   +A +LF  + + D  +   +  LSC L+    + AA  F
Sbjct: 574 RDVVTWTVMIGGYA-QHGDANNALQLFSGMFKMDKSIKPNDFTLSCALVACARL-AALRF 631

Query: 62  FQRLPIKDTASW---------NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYI 112
            +++      ++         N +I  + +  ++  A+ +F  MP++N+VSW+++++GY 
Sbjct: 632 GRQVHAYVLRNFYGSVMLFVANCLIDMYSKSGDVDTAQIVFDNMPQRNAVSWTSLMTGYG 691

Query: 113 ECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNA 172
             G+                                     ED L++   M  + + P+ 
Sbjct: 692 MHGR------------------------------------GEDALRVFDEMRKVPLVPDG 715

Query: 173 SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLE 232
            +   VL  CSH      G   H + F + + KD   + P        G    AC     
Sbjct: 716 ITFLVVLYACSH-----SGMVDHGINFFNRMSKD-FGVDP--------GPEHYAC----- 756

Query: 233 IQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 292
                      M+  + + G+  +A++L ++M    M+P  + +VALL AC     V+LG
Sbjct: 757 -----------MVDLWGRAGRLGEAMKLINEMP---MEPTPVVWVALLSACRLHSNVELG 802


>gi|125558027|gb|EAZ03563.1| hypothetical protein OsI_25699 [Oryza sativa Indica Group]
          Length = 528

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 223/535 (41%), Positives = 328/535 (61%), Gaps = 22/535 (4%)

Query: 25  DAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKK 84
           DA+  FD+IP P+ V    M S  + N + V  + + F+ +   D+AS     +  V   
Sbjct: 2   DARRAFDEIPDPNPVIVTAMASGYVRN-NLVYHSLELFRAMIASDSASVVDEAAALVAFS 60

Query: 85  NMAKARDLFLAMP----------EKNSVSWSAMISGYIECGQ--LDKAVELFKVAPVKSV 132
             A+  D  +             E+N+   + M+  Y + G   L+ A ++F     + V
Sbjct: 61  ASARVPDRGVTASLHALIAKIGFERNAGVVNTMLDSYAKGGSRDLEVARKVFDTME-RDV 119

Query: 133 VAWTAMISGYMKFGYVENSWAEDGLKLLRMM--IGLGIRPNASSLSSVLLGCSHLSSLQL 190
           V+W +MI+ Y      +N  + + + L   M  +G GI+ NA +LS+VLL C+H  ++Q 
Sbjct: 120 VSWNSMIALY-----AQNGMSAEAIGLYSKMLNVGGGIKCNAVALSAVLLACAHAGAIQT 174

Query: 191 GKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQ 250
           GK +H  V +  L ++    T ++ MY KCG +E A + F +I+ K++++W+AMI+GY  
Sbjct: 175 GKHIHNQVVRMGLEENVYVGTSIVDMYSKCGRVEMASRAFRKIKEKNILSWSAMITGYGM 234

Query: 251 HGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPD 310
           HG+G++AL +F +MK  G++P+ ITF+++L AC+HAGL+D G  ++++M  ++GI A  +
Sbjct: 235 HGRGQEALEIFTEMKRSGLRPNYITFISVLAACSHAGLLDEGRYWYNAMKQEFGIEAGVE 294

Query: 311 HYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNL 370
           HY CMVDLLGRAG L EA  LIK+M  KP  AI+G LLSACR+HK ++LAE +   LF L
Sbjct: 295 HYGCMVDLLGRAGCLDEAYSLIKEMKVKPDAAIWGALLSACRIHKNVELAEMSVKRLFEL 354

Query: 371 NPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDR 430
           + +N +G YV L+NIYA    W DV RIRL +K   + K PGYS  E+   ++ F  GD+
Sbjct: 355 DASN-SGYYVLLSNIYAEAGMWKDVERIRLLVKTRRIEKPPGYSSFELKGKIYLFYVGDK 413

Query: 431 VHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKV 490
            HP+ + I+  L++L +RM+ AGYVP+    LH + EE KE  L  HSEKLA+AF L+  
Sbjct: 414 SHPQHIEIYSYLEKLLERMQEAGYVPNTGSVLHDLDEEEKESALRIHSEKLAVAFALMNS 473

Query: 491 PLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
              + I + KNLRVC DCH A K+I+ I +REII+RD  RFHHFKDG CSC DYW
Sbjct: 474 VPRSVIHIIKNLRVCSDCHTAMKFITKITEREIIIRDLQRFHHFKDGLCSCRDYW 528


>gi|414590987|tpg|DAA41558.1| TPA: hypothetical protein ZEAMMB73_311644 [Zea mays]
          Length = 575

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 209/495 (42%), Positives = 306/495 (61%), Gaps = 9/495 (1%)

Query: 51  NSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISG 110
            +D   AAFD     P +D    N M++ +V +  +A+AR +F  M E++ VSW+ MI G
Sbjct: 90  RADLARAAFD---EAPRRDVFLCNVMLAAYVTRGEVAEARRVFDGMRERDMVSWNTMIHG 146

Query: 111 YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRP 170
           Y   G++D A E+F     +   +W++M+S Y K        ++D L+L R M    + P
Sbjct: 147 YAVNGEVDLAREVFNGMDDRDAFSWSSMMSAYTK-----GRRSKDALELWREMRAACVNP 201

Query: 171 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 230
           + +++ SVL  CS + +L +G +VHQ V  + +  D    T LI MY KCGD+E++ ++F
Sbjct: 202 DCTTMVSVLSACSDMGALAVGAEVHQFVESNGVELDVKLGTALIDMYAKCGDIENSVRVF 261

Query: 231 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVD 290
             +  KDV+TW++MI G A HG G  AL LF +M  EG++P+ +TF+ +L++C H GLV 
Sbjct: 262 HSMPVKDVLTWSSMIIGLANHGFGHDALSLFSRMLSEGLQPNEVTFIGVLISCTHLGLVS 321

Query: 291 LGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSA 350
            G +YF SM   +G+  K  HY CMVDLLGR+G + EA  LI+ MPF+P   I+  LL A
Sbjct: 322 DGKKYFSSMSVVHGVTPKVQHYGCMVDLLGRSGHIEEAKQLIRDMPFEPDAVIWRALLGA 381

Query: 351 CRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKM 410
           CR++K +++AE A   L  L+P +A G YV L+NIYA    W+ VA +R +++   + ++
Sbjct: 382 CRIYKNVEVAEEAMAKLRVLDP-HADGHYVLLSNIYAQANSWEGVAEMRRTLRRERIQRI 440

Query: 411 PGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVK 470
           PG S IE    +HEF SGDR HP    I++ L E+  R++ AGY P     L  + E+ K
Sbjct: 441 PGRSSIEWQNTIHEFISGDRSHPRSKEIYKMLGEMMDRLRQAGYKPMTGLVLQDIDEQSK 500

Query: 471 EQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTR 530
           E+ L  HSEKLA+AFGL+  P G+ +R+ KNLR C DCH A K I+ + +R++I+RD  R
Sbjct: 501 ERALAEHSEKLAVAFGLLTTPAGSTLRITKNLRACEDCHSAIKLIALLYERKLIIRDRNR 560

Query: 531 FHHFKDGTCSCGDYW 545
           FHHF +G CSC DYW
Sbjct: 561 FHHFSEGRCSCKDYW 575



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 49/193 (25%), Positives = 85/193 (44%), Gaps = 21/193 (10%)

Query: 171 NASSLSSVLLGCSHLSS-------LQLGK-QVHQLVFKSPLCK-DTTALTPLISMYCKCG 221
           N+ SLS  +   + LS+       L LG   +H    KS     D    T L+  Y K G
Sbjct: 30  NSFSLSLAMQASAALSASVPAMRDLGLGAASLHARALKSGFAAADLFVRTALVEAYAKAG 89

Query: 222 DLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLL 281
             + A   F E  R+DV   N M++ Y   G+  +A R+FD M++     D +++  ++ 
Sbjct: 90  RADLARAAFDEAPRRDVFLCNVMLAAYVTRGEVAEARRVFDGMRER----DMVSWNTMIH 145

Query: 282 ACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP---FK 338
                G VDL  + F+ M +    +     ++ M+    +  +  +A++L ++M      
Sbjct: 146 GYAVNGEVDLAREVFNGMDDRDAFS-----WSSMMSAYTKGRRSKDALELWREMRAACVN 200

Query: 339 PQPAIFGTLLSAC 351
           P      ++LSAC
Sbjct: 201 PDCTTMVSVLSAC 213


>gi|359481040|ref|XP_002266469.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Vitis vinifera]
          Length = 709

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 216/536 (40%), Positives = 329/536 (61%), Gaps = 15/536 (2%)

Query: 18  KQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNS--DDVVAAFDFFQRLPIK-DTASWN 74
           K+   L   +++F+ +P+ D+VS+N ++S    N   +D +          ++ D+ + +
Sbjct: 181 KESYYLGSLRKVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLS 240

Query: 75  TMISGFVQKKNMAKARDLFLAMPEKNSVS-----WSAMISGYIECGQLDKAVELFKVAPV 129
           +++  F +  N+ K +++      +N         S++I  Y +C ++D +  +F + P 
Sbjct: 241 SVLPIFAEYVNLLKGKEIH-GYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQ 299

Query: 130 KSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQ 189
              ++W ++I+G      V+N   ++GLK  + M+   I+PN  S SS++  C+HL++L 
Sbjct: 300 HDGISWNSIIAGC-----VQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLH 354

Query: 190 LGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYA 249
           LGKQ+H  + +S    +    + L+ MY KCG++  A  +F +++  D+V+W AMI GYA
Sbjct: 355 LGKQLHGYIIRSRFDGNVFIASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGYA 414

Query: 250 QHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKP 309
            HG    A+ LF +M+ EG+KP+ + F+A+L AC+HAGLVD   +YF+SM  DY I    
Sbjct: 415 LHGHAYDAISLFKRMEVEGVKPNYVAFMAVLTACSHAGLVDEAWKYFNSMTQDYRIIPGL 474

Query: 310 DHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFN 369
           +HY  + DLLGR G+L EA + I  M  +P  +++ TLL+ACRVHK ++LAE  +  LF 
Sbjct: 475 EHYAAVADLLGRVGRLEEAYEFISDMHIEPTGSVWSTLLAACRVHKNIELAEKVSKKLFT 534

Query: 370 LNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGD 429
           ++P N  G YV L+NIY+A  +W D  ++R++M++  + K P  SWIE+   VH F +GD
Sbjct: 535 VDPQN-IGAYVLLSNIYSAAGRWKDARKLRIAMRDKGMKKKPACSWIEIKNKVHAFVAGD 593

Query: 430 RVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIK 489
           + HP    I+E LK L ++M+  GYV D    LH V EE K  LL  HSE+LAI FG+I 
Sbjct: 594 KSHPYYDRINEALKVLLEQMEREGYVLDTTEVLHDVEEEQKRYLLCSHSERLAITFGIIS 653

Query: 490 VPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
            P GT IRV KNLRVC DCH ATK+IS I  REI+VRD +RFHHFKDG CSCGD+W
Sbjct: 654 TPAGTTIRVTKNLRVCVDCHTATKFISKIVGREIVVRDNSRFHHFKDGKCSCGDFW 709



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 59/233 (25%), Positives = 104/233 (44%), Gaps = 40/233 (17%)

Query: 81  VQKKNMAK---ARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVK-SVVAWT 136
           V+ K+ AK   A+ L  ++P  + +S   ++S Y     L  ++ +F   P   + +AW 
Sbjct: 18  VKSKSQAKQLHAQILRTSLPSPSLLS--TILSIYSNLNLLHDSLLIFNSLPSPPTTLAWK 75

Query: 137 AMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQ 196
           ++I  Y   G   +S     L     M+  G  P+ +   SVL  C+ +  L+ G+ VH 
Sbjct: 76  SIIRCYTSHGLFLHS-----LSFFIQMLASGKYPDHNVFPSVLKSCTLMKDLRFGESVHG 130

Query: 197 LVFKSPLCKDTTALTPLISMYCKCGDLEDAC----------------------------- 227
            + +  +  D      L++MY K   LE+                               
Sbjct: 131 CIIRLGMGFDLYTCNALMNMYSKFWSLEEVNTYKKVFDEGKTSDVYSKKEKESYYLGSLR 190

Query: 228 KLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 280
           K+F  + ++D+V+WN +ISG AQ+G  E AL +  +M +  ++PDS T  ++L
Sbjct: 191 KVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVL 243



 Score = 41.2 bits (95), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 27/109 (24%), Positives = 50/109 (45%), Gaps = 2/109 (1%)

Query: 177 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK 236
           ++L   S + S    KQ+H  + ++ L    + L+ ++S+Y     L D+  +F  +   
Sbjct: 10  TLLQNPSSVKSKSQAKQLHAQILRTSL-PSPSLLSTILSIYSNLNLLHDSLLIFNSLPSP 68

Query: 237 -DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 284
              + W ++I  Y  HG    +L  F +M   G  PD   F ++L +C 
Sbjct: 69  PTTLAWKSIIRCYTSHGLFLHSLSFFIQMLASGKYPDHNVFPSVLKSCT 117


>gi|222622177|gb|EEE56309.1| hypothetical protein OsJ_05395 [Oryza sativa Japonica Group]
          Length = 922

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 212/552 (38%), Positives = 332/552 (60%), Gaps = 15/552 (2%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  + T++W  ++AG+A Q G+ ++A  L  ++ +  ++     L+ I     ++VA   
Sbjct: 379 MPFRNTISWAGMIAGYA-QNGRSEEALGLLQELHRSGMLPSLSSLTSIFFACSNIVALET 437

Query: 61  FFQ--RLPIK-----DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE 113
             Q   L +K     ++ + N +I+ + + +NM  AR +F  M  K+ VSW++ ++  ++
Sbjct: 438 GTQVHSLAVKVGCQFNSFACNALITMYGKCRNMEYARQVFSRMVTKDIVSWNSFLAALVQ 497

Query: 114 CGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNAS 173
              LD+A   F     +  V+WT +IS Y    + E S   + +   + M      PN+ 
Sbjct: 498 NDLLDEARNTFDNMLSRDDVSWTTIISAY---AHAEQS--NEAMGAFKTMFCEHELPNSP 552

Query: 174 SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI 233
            L+ +L  C  L + ++G+Q+H +  K  +  +      LISMY KCG   D+ ++F  +
Sbjct: 553 ILTILLGVCGSLGASKIGQQIHTVAIKLGMDSELIVANALISMYFKCG-CADSRRIFDLM 611

Query: 234 QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGI 293
           + +D+ TWN +I+GYAQHG G +A++++  M+  G+ P+ +TFV LL AC+HAGLVD G 
Sbjct: 612 EERDIFTWNTIITGYAQHGLGREAIKMYQHMESAGVLPNEVTFVGLLNACSHAGLVDEGW 671

Query: 294 QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRV 353
           ++F SM  DYG+   P+HY CMVDLLGR G +  A   I  MP +P   I+  LL AC++
Sbjct: 672 KFFKSMSQDYGLTPLPEHYACMVDLLGRTGDVQGAEQFIYDMPIEPDTVIWSALLGACKI 731

Query: 354 HKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGY 413
           HK  ++ + AA  LF + P+NA G YV L+NIY+++  W +VA +R  MK+  V+K PG 
Sbjct: 732 HKNAEIGKRAAEKLFRIEPSNA-GNYVMLSNIYSSLGMWGEVAEVRKIMKQQGVIKEPGC 790

Query: 414 SWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQL 473
           SW ++   +H F +GD+ H ++  I   L+EL   +K  GYVPD EF LH + EE KE  
Sbjct: 791 SWTQIKDKMHSFVTGDKQHEQIEEIVATLEELYTLLKATGYVPDTEFVLHDIDEEQKESS 850

Query: 474 LLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHH 533
           LL+HSEKLA+A+ L+  P G PI++ KNLR+CGDCH   K++S + KR+I +RD  RFHH
Sbjct: 851 LLYHSEKLAVAYCLLATPKGMPIQILKNLRICGDCHTFIKFVSHVTKRQIDIRDGNRFHH 910

Query: 534 FKDGTCSCGDYW 545
           F++G+CSC D+W
Sbjct: 911 FRNGSCSCEDFW 922



 Score =  155 bits (392), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 91/316 (28%), Positives = 170/316 (53%), Gaps = 14/316 (4%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
            ++L  +++    L  A + F+ + + +  +++ M++  L +   + AA   ++R P+K 
Sbjct: 263 TAILNVYSRDTSVLDTAIKFFESMIERNEYTWSTMIAA-LSHGGRIDAAIAVYERDPVKS 321

Query: 70  TASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPV 129
            A    +I+G  Q   +  AR LF  +PE   VSW+A+I+GY++ G +++A ELF   P 
Sbjct: 322 IACRTALITGLAQCGRIDDARILFEQIPEPIVVSWNALITGYMQNGMVNEAKELFDKMPF 381

Query: 130 KSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQ 189
           ++ ++W  MI+     GY +N  +E+ L LL+ +   G+ P+ SSL+S+   CS++ +L+
Sbjct: 382 RNTISWAGMIA-----GYAQNGRSEEALGLLQELHRSGMLPSLSSLTSIFFACSNIVALE 436

Query: 190 LGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYA 249
            G QVH L  K     ++ A   LI+MY KC ++E A ++F  +  KD+V+WN+ ++   
Sbjct: 437 TGTQVHSLAVKVGCQFNSFACNALITMYGKCRNMEYARQVFSRMVTKDIVSWNSFLAALV 496

Query: 250 QHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKP 309
           Q+   ++A   FD M    +  D +++  ++ A  HA   +  +  F +M  ++ +   P
Sbjct: 497 QNDLLDEARNTFDNM----LSRDDVSWTTIISAYAHAEQSNEAMGAFKTMFCEHELPNSP 552

Query: 310 DHYTCMVDLLGRAGKL 325
                +  LLG  G L
Sbjct: 553 ----ILTILLGVCGSL 564



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 89/352 (25%), Positives = 170/352 (48%), Gaps = 51/352 (14%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSC--------------------------ILLNS-- 52
           G++ +A+E+FD +P+ D++++N M+S                           ILL+   
Sbjct: 48  GRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAISGGNMRTGAILLSGYG 107

Query: 53  --DDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISG 110
               V+ A   F  +  ++T +WN MIS +VQ  ++  AR LF AMP ++  SW++M++G
Sbjct: 108 RLGRVLEARRVFDGMLERNTVAWNAMISCYVQNGDITMARRLFDAMPSRDVSSWNSMLTG 167

Query: 111 YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVEN---SWAEDGLKLLRMMIGLG 167
           Y    Q+  A  LF+  P +++V+WT MISGY   G +EN   +W      +   M   G
Sbjct: 168 YCHSLQMVDARNLFEKMPERNLVSWTVMISGY---GRIENHGKAW-----DIFCKMHREG 219

Query: 168 IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCK-CGDLEDA 226
           + P+ S+ +S L     L +L + + +  L  K+   +D    T ++++Y +    L+ A
Sbjct: 220 LLPDQSNFASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDTA 279

Query: 227 CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHA 286
            K F  +  ++  TW+ MI+  +  G+ + A+ ++++   + +   +    AL+      
Sbjct: 280 IKFFESMIERNEYTWSTMIAALSHGGRIDAAIAVYERDPVKSIACRT----ALITGLAQC 335

Query: 287 GLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 338
           G +D     F+ +     ++     +  ++    + G + EA +L  KMPF+
Sbjct: 336 GRIDDARILFEQIPEPIVVS-----WNALITGYMQNGMVNEAKELFDKMPFR 382



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 73/314 (23%), Positives = 148/314 (47%), Gaps = 21/314 (6%)

Query: 86  MAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKF 145
           + +AR++F AMP ++ ++W++MIS Y   G  D A +L+      ++     ++SGY + 
Sbjct: 50  VGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAISGGNMRTGAILLSGYGRL 109

Query: 146 GYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCK 205
           G V        L+  R+  G+ +  N  + ++++        + + ++    +F +   +
Sbjct: 110 GRV--------LEARRVFDGM-LERNTVAWNAMISCYVQNGDITMARR----LFDAMPSR 156

Query: 206 DTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMK 265
           D ++   +++ YC    + DA  LF ++  +++V+W  MISGY +     KA  +F KM 
Sbjct: 157 DVSSWNSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMH 216

Query: 266 DEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKL 325
            EG+ PD   F + L A    G +D+ ++    +    G        T ++++  R   +
Sbjct: 217 REGLLPDQSNFASALSAVKGLGNLDV-LESLRVLALKTGFERDVVIGTAILNVYSRDTSV 275

Query: 326 VE-AVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLAN 384
           ++ A+   + M  +     + T+++A     R+D    AA+ ++  +P  +  C   L  
Sbjct: 276 LDTAIKFFESM-IERNEYTWSTMIAALSHGGRID----AAIAVYERDPVKSIACRTALIT 330

Query: 385 IYAAMKKWDDVARI 398
             A   + DD ARI
Sbjct: 331 GLAQCGRIDD-ARI 343



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/179 (24%), Positives = 74/179 (41%), Gaps = 18/179 (10%)

Query: 219 KCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVA 278
           + G + +A ++F  + R+D++ WN+MIS Y  +G  + A  L+D +    M+  +I    
Sbjct: 46  RLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAISGGNMRTGAI---- 101

Query: 279 LLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 338
           LL      G V    + FD M+    +A     +  M+    + G +  A  L   MP +
Sbjct: 102 LLSGYGRLGRVLEARRVFDGMLERNTVA-----WNAMISCYVQNGDITMARRLFDAMPSR 156

Query: 339 PQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAM----KKWD 393
              +    L   C   + +D     A NLF   P      +  + + Y  +    K WD
Sbjct: 157 DVSSWNSMLTGYCHSLQMVD-----ARNLFEKMPERNLVSWTVMISGYGRIENHGKAWD 210


>gi|297720883|ref|NP_001172804.1| Os02g0151000 [Oryza sativa Japonica Group]
 gi|51535971|dbj|BAD38052.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|218190072|gb|EEC72499.1| hypothetical protein OsI_05871 [Oryza sativa Indica Group]
 gi|255670608|dbj|BAH91533.1| Os02g0151000 [Oryza sativa Japonica Group]
          Length = 922

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 212/552 (38%), Positives = 332/552 (60%), Gaps = 15/552 (2%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  + T++W  ++AG+A Q G+ ++A  L  ++ +  ++     L+ I     ++VA   
Sbjct: 379 MPFRNTISWAGMIAGYA-QNGRSEEALGLLQELHRSGMLPSLSSLTSIFFACSNIVALET 437

Query: 61  FFQ--RLPIK-----DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE 113
             Q   L +K     ++ + N +I+ + + +NM  AR +F  M  K+ VSW++ ++  ++
Sbjct: 438 GTQVHSLAVKVGCQFNSFACNALITMYGKCRNMEYARQVFSRMVTKDIVSWNSFLAALVQ 497

Query: 114 CGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNAS 173
              LD+A   F     +  V+WT +IS Y    + E S   + +   + M      PN+ 
Sbjct: 498 NDLLDEARNTFDNMLSRDDVSWTTIISAY---AHAEQS--NEAMGAFKTMFCEHELPNSP 552

Query: 174 SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI 233
            L+ +L  C  L + ++G+Q+H +  K  +  +      LISMY KCG   D+ ++F  +
Sbjct: 553 ILTILLGVCGSLGASKIGQQIHTVAIKLGMDSELIVANALISMYFKCG-CADSRRIFDLM 611

Query: 234 QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGI 293
           + +D+ TWN +I+GYAQHG G +A++++  M+  G+ P+ +TFV LL AC+HAGLVD G 
Sbjct: 612 EERDIFTWNTIITGYAQHGLGREAIKMYQHMESAGVLPNEVTFVGLLNACSHAGLVDEGW 671

Query: 294 QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRV 353
           ++F SM  DYG+   P+HY CMVDLLGR G +  A   I  MP +P   I+  LL AC++
Sbjct: 672 KFFKSMSQDYGLTPLPEHYACMVDLLGRTGDVQGAEQFIYDMPIEPDTVIWSALLGACKI 731

Query: 354 HKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGY 413
           HK  ++ + AA  LF + P+NA G YV L+NIY+++  W +VA +R  MK+  V+K PG 
Sbjct: 732 HKNAEIGKRAAEKLFRIEPSNA-GNYVMLSNIYSSLGMWGEVAEVRKIMKQQGVIKEPGC 790

Query: 414 SWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQL 473
           SW ++   +H F +GD+ H ++  I   L+EL   +K  GYVPD EF LH + EE KE  
Sbjct: 791 SWTQIKDKMHSFVTGDKQHEQIEEIVATLEELYTLLKATGYVPDTEFVLHDIDEEQKESS 850

Query: 474 LLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHH 533
           LL+HSEKLA+A+ L+  P G PI++ KNLR+CGDCH   K++S + KR+I +RD  RFHH
Sbjct: 851 LLYHSEKLAVAYCLLATPKGMPIQILKNLRICGDCHTFIKFVSHVTKRQIDIRDGNRFHH 910

Query: 534 FKDGTCSCGDYW 545
           F++G+CSC D+W
Sbjct: 911 FRNGSCSCEDFW 922



 Score =  155 bits (392), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 91/316 (28%), Positives = 170/316 (53%), Gaps = 14/316 (4%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
            ++L  +++    L  A + F+ + + +  +++ M++  L +   + AA   ++R P+K 
Sbjct: 263 TAILNVYSRDTSVLDTAIKFFESMIERNEYTWSTMIAA-LSHGGRIDAAIAVYERDPVKS 321

Query: 70  TASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPV 129
            A    +I+G  Q   +  AR LF  +PE   VSW+A+I+GY++ G +++A ELF   P 
Sbjct: 322 IACRTALITGLAQCGRIDDARILFEQIPEPIVVSWNALITGYMQNGMVNEAKELFDKMPF 381

Query: 130 KSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQ 189
           ++ ++W  MI+     GY +N  +E+ L LL+ +   G+ P+ SSL+S+   CS++ +L+
Sbjct: 382 RNTISWAGMIA-----GYAQNGRSEEALGLLQELHRSGMLPSLSSLTSIFFACSNIVALE 436

Query: 190 LGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYA 249
            G QVH L  K     ++ A   LI+MY KC ++E A ++F  +  KD+V+WN+ ++   
Sbjct: 437 TGTQVHSLAVKVGCQFNSFACNALITMYGKCRNMEYARQVFSRMVTKDIVSWNSFLAALV 496

Query: 250 QHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKP 309
           Q+   ++A   FD M    +  D +++  ++ A  HA   +  +  F +M  ++ +   P
Sbjct: 497 QNDLLDEARNTFDNM----LSRDDVSWTTIISAYAHAEQSNEAMGAFKTMFCEHELPNSP 552

Query: 310 DHYTCMVDLLGRAGKL 325
                +  LLG  G L
Sbjct: 553 ----ILTILLGVCGSL 564



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 89/352 (25%), Positives = 170/352 (48%), Gaps = 51/352 (14%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSC--------------------------ILLNS-- 52
           G++ +A+E+FD +P+ D++++N M+S                           ILL+   
Sbjct: 48  GRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAISGGNMRTGAILLSGYG 107

Query: 53  --DDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISG 110
               V+ A   F  +  ++T +WN MIS +VQ  ++  AR LF AMP ++  SW++M++G
Sbjct: 108 RLGRVLEARRVFDGMLERNTVAWNAMISCYVQNGDITMARRLFDAMPSRDVSSWNSMLTG 167

Query: 111 YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVEN---SWAEDGLKLLRMMIGLG 167
           Y    Q+  A  LF+  P +++V+WT MISGY   G +EN   +W      +   M   G
Sbjct: 168 YCHSLQMVDARNLFEKMPERNLVSWTVMISGY---GRIENHGKAW-----DIFCKMHREG 219

Query: 168 IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCK-CGDLEDA 226
           + P+ S+ +S L     L +L + + +  L  K+   +D    T ++++Y +    L+ A
Sbjct: 220 LLPDQSNFASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDTA 279

Query: 227 CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHA 286
            K F  +  ++  TW+ MI+  +  G+ + A+ ++++   + +   +    AL+      
Sbjct: 280 IKFFESMIERNEYTWSTMIAALSHGGRIDAAIAVYERDPVKSIACRT----ALITGLAQC 335

Query: 287 GLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 338
           G +D     F+ +     ++     +  ++    + G + EA +L  KMPF+
Sbjct: 336 GRIDDARILFEQIPEPIVVS-----WNALITGYMQNGMVNEAKELFDKMPFR 382



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 73/314 (23%), Positives = 148/314 (47%), Gaps = 21/314 (6%)

Query: 86  MAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKF 145
           + +AR++F AMP ++ ++W++MIS Y   G  D A +L+      ++     ++SGY + 
Sbjct: 50  VGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAISGGNMRTGAILLSGYGRL 109

Query: 146 GYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCK 205
           G V        L+  R+  G+ +  N  + ++++        + + ++    +F +   +
Sbjct: 110 GRV--------LEARRVFDGM-LERNTVAWNAMISCYVQNGDITMARR----LFDAMPSR 156

Query: 206 DTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMK 265
           D ++   +++ YC    + DA  LF ++  +++V+W  MISGY +     KA  +F KM 
Sbjct: 157 DVSSWNSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMH 216

Query: 266 DEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKL 325
            EG+ PD   F + L A    G +D+ ++    +    G        T ++++  R   +
Sbjct: 217 REGLLPDQSNFASALSAVKGLGNLDV-LESLRVLALKTGFERDVVIGTAILNVYSRDTSV 275

Query: 326 VE-AVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLAN 384
           ++ A+   + M  +     + T+++A     R+D    AA+ ++  +P  +  C   L  
Sbjct: 276 LDTAIKFFESM-IERNEYTWSTMIAALSHGGRID----AAIAVYERDPVKSIACRTALIT 330

Query: 385 IYAAMKKWDDVARI 398
             A   + DD ARI
Sbjct: 331 GLAQCGRIDD-ARI 343



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/179 (24%), Positives = 74/179 (41%), Gaps = 18/179 (10%)

Query: 219 KCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVA 278
           + G + +A ++F  + R+D++ WN+MIS Y  +G  + A  L+D +    M+  +I    
Sbjct: 46  RLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAISGGNMRTGAI---- 101

Query: 279 LLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 338
           LL      G V    + FD M+    +A     +  M+    + G +  A  L   MP +
Sbjct: 102 LLSGYGRLGRVLEARRVFDGMLERNTVA-----WNAMISCYVQNGDITMARRLFDAMPSR 156

Query: 339 PQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAM----KKWD 393
              +    L   C   + +D     A NLF   P      +  + + Y  +    K WD
Sbjct: 157 DVSSWNSMLTGYCHSLQMVD-----ARNLFEKMPERNLVSWTVMISGYGRIENHGKAWD 210


>gi|302812982|ref|XP_002988177.1| hypothetical protein SELMODRAFT_127579 [Selaginella moellendorffii]
 gi|300143909|gb|EFJ10596.1| hypothetical protein SELMODRAFT_127579 [Selaginella moellendorffii]
          Length = 742

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 226/547 (41%), Positives = 337/547 (61%), Gaps = 14/547 (2%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQP--DVVSYNIMLSCILLNSDDVVAAFDFFQRLPI 67
           N+V+  + +  G +++A+++FD + +   DVVS+NIMLS  + N D    A   +QR+ +
Sbjct: 199 NAVMTMYGRC-GAVEEARKVFDAMDEALRDVVSWNIMLSTYVHN-DRGKDAIQLYQRMQL 256

Query: 68  K-DTASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMISGYIECGQLDKAVE 122
           + D  ++ +++S     +++   R L   +     EKN +  +A++S Y +CG   +A  
Sbjct: 257 RPDKVTYVSLLSACSSAEDVGLGRVLHKQIVNDELEKNVIVGNALVSMYAKCGSHTEARA 316

Query: 123 LFKVAPVKSVVAWTAMISGYMKFGYVENSWA--EDGLKLLRMMIGLGIRPNASSLSSVLL 180
           +F     +S+++WT +IS Y++   V  +    +  L+L +      ++P+A +  ++L 
Sbjct: 317 VFDKMEQRSIISWTTIISAYVRRRLVAEACHLFQQMLELEKNGSSQRVKPDALAFVTILN 376

Query: 181 GCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI-QRKDVV 239
            C+ +S+L+ GK V +      L  D    T ++++Y KCG++E+A ++F  +  R DV 
Sbjct: 377 ACADVSALEQGKMVSEQAASCGLSSDKAVGTAVVNLYGKCGEIEEARRIFDAVCSRPDVQ 436

Query: 240 TWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSM 299
            WNAMI+ YAQ G+  +AL+LF +M+ EG++PDS +FV++LLAC+H GL D G  YF SM
Sbjct: 437 LWNAMIAVYAQFGQSHEALKLFWRMEMEGVRPDSFSFVSILLACSHTGLEDQGKSYFTSM 496

Query: 300 VNDY-GIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLD 358
             +Y  +     H+ C+ DLLGR G+L EA + ++K+P KP    + +LL+ACR H+ L 
Sbjct: 497 TTEYRNVTRTIQHFGCVADLLGRGGRLKEAEEFLEKLPVKPDAVAWTSLLAACRNHRDLK 556

Query: 359 LAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEV 418
            A+  A  L  L P  A G YV L+NIYA ++KW  VA++R  M E  V K  G S IE+
Sbjct: 557 RAKEVANKLLRLEPRCATG-YVALSNIYAELQKWHAVAKVRKFMAEQGVKKERGVSTIEI 615

Query: 419 GTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHS 478
           G  +H+F +GD  HP    I E+L +L  +MK  GYVPD +  LH V E+ KE+LL  HS
Sbjct: 616 GKYMHDFATGDDAHPRNREIREELAKLHSQMKECGYVPDTKMVLHFVDEQEKERLLFSHS 675

Query: 479 EKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGT 538
           E+LAIA GLI  PLGTP+RV KNLRVC DCH ATK IS I  R+I+VRD TRFH FKDG 
Sbjct: 676 ERLAIALGLISTPLGTPLRVTKNLRVCSDCHTATKLISKIAGRKIVVRDPTRFHLFKDGK 735

Query: 539 CSCGDYW 545
           CSC DYW
Sbjct: 736 CSCQDYW 742



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 87/381 (22%), Positives = 158/381 (41%), Gaps = 49/381 (12%)

Query: 111 YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRP 170
           Y  C     A   F     +++ +WT +++ +   G      +++ L+ L  M   G+RP
Sbjct: 2   YAHCDSPGDAKAAFDALEQRNLYSWTGLVAAFAISGQ-----SKETLRALERMRQDGVRP 56

Query: 171 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 230
           +A +  + L  C    SL+ G ++HQ+V  S L  D      L++MY KCG L  A ++F
Sbjct: 57  DAVTFITALGSCGDPESLRDGIRIHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVF 116

Query: 231 LEIQR-KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLV 289
            +++R ++V++W+ M   +A HG   +ALR F  M   G+K      V +L AC+   LV
Sbjct: 117 AKMERTRNVISWSIMAGAHALHGNVWEALRHFRFMLLLGIKATKSAMVTILSACSSPALV 176

Query: 290 DLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVE---------------------- 327
             G +   S +   G  ++      ++ + GR G + E                      
Sbjct: 177 QDG-RMIHSCIALSGFESELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIML 235

Query: 328 -----------AVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAA 376
                      A+ L ++M  +P    + +LLSAC   + + L       + N       
Sbjct: 236 STYVHNDRGKDAIQLYQRMQLRPDKVTYVSLLSACSSAEDVGLGRVLHKQIVNDELEKNV 295

Query: 377 GCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELV 436
                L ++YA      +   +   M++ +++     SW    T++  +    R+  E  
Sbjct: 296 IVGNALVSMYAKCGSHTEARAVFDKMEQRSII-----SWT---TIISAYVR-RRLVAEAC 346

Query: 437 SIHEKLKELEKRMKLAGYVPD 457
            + +++ ELEK        PD
Sbjct: 347 HLFQQMLELEKNGSSQRVKPD 367



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 30/120 (25%), Positives = 63/120 (52%), Gaps = 1/120 (0%)

Query: 216 MYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSIT 275
           MY  C    DA   F  ++++++ +W  +++ +A  G+ ++ LR  ++M+ +G++PD++T
Sbjct: 1   MYAHCDSPGDAKAAFDALEQRNLYSWTGLVAAFAISGQSKETLRALERMRQDGVRPDAVT 60

Query: 276 FVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335
           F+  L +C     +  GI+    MV D  +   P     ++++  + G L  A  +  KM
Sbjct: 61  FITALGSCGDPESLRDGIR-IHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVFAKM 119


>gi|357479991|ref|XP_003610281.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355511336|gb|AES92478.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 783

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 226/543 (41%), Positives = 313/543 (57%), Gaps = 35/543 (6%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTM---- 76
           G +  A+ LF +I +PD+++YN M+S    N     +   F + L   +  S +T+    
Sbjct: 258 GDVNTARLLFRRINRPDLIAYNAMISGFTANGGTECSVKLFRELLFSGERVSSSTIVGLI 317

Query: 77  --------------ISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVE 122
                         I GF  K  +             N    +A  + Y +  ++D A  
Sbjct: 318 PLHSPFGHLHLACSIHGFCVKSGIIL-----------NPTVSTAFTAIYNKLNEIDLARH 366

Query: 123 LFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGC 182
           LF  +P K+VVAW AMISGY      +N   E  + L + M+     PNA +++++L  C
Sbjct: 367 LFDESPEKTVVAWNAMISGY-----TQNGSTETAISLFKEMMKTEFTPNAVTITTILSAC 421

Query: 183 SHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWN 242
           + L SL  GK VH L+    L  +    T L+ MY KCG++ +A +LF  +  K+ VTWN
Sbjct: 422 AQLGSLSFGKWVHHLIKSENLEPNIYVSTALVDMYAKCGNISEAWQLFDSMSEKNTVTWN 481

Query: 243 AMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVND 302
            MI GY  HG G +AL+L+++M   G  P ++TF+++L AC+HAGLV  G + F +MVN 
Sbjct: 482 TMIFGYGLHGYGHEALKLYNEMLHLGYNPSAVTFLSVLYACSHAGLVGEGEEIFHNMVNK 541

Query: 303 YGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEF 362
           Y I    +HY CMVD+LGR+G+L +A++ IKKMP +P PA++GTLL AC +HK  D+A  
Sbjct: 542 YRIEPLIEHYACMVDILGRSGQLEKALEFIKKMPVEPGPAVWGTLLGACMIHKDTDIARL 601

Query: 363 AAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVV 422
           A+  LF L+P  + G YV L+NIY+  + +   A IR  +K+  + K PG + IEV    
Sbjct: 602 ASERLFELDPG-SVGYYVLLSNIYSVERNFPKAASIRQVVKKRKLAKSPGCTLIEVNGTP 660

Query: 423 HEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLA 482
           H F SGDR H     I+ KL++L  +M+  GY  +   ALH V EE KE  +  HSEKLA
Sbjct: 661 HVFVSGDRSHSHATDIYAKLEKLTGKMREMGYQAETVPALHDVEEEEKELAVNVHSEKLA 720

Query: 483 IAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCG 542
           IAFGLI    G  IR+ KNLRVC DCH ATK+IS I +R I+VRD  RFHHFKDG CSCG
Sbjct: 721 IAFGLITTEPGNEIRIIKNLRVCLDCHTATKFISKITERVIVVRDANRFHHFKDGICSCG 780

Query: 543 DYW 545
           DYW
Sbjct: 781 DYW 783



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 117/453 (25%), Positives = 189/453 (41%), Gaps = 75/453 (16%)

Query: 13  LAGFAKQRGKLKD------AQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP 66
           LA   K   KL D      A+ LF  +P+PD+  +N+++    LN D   ++   +  L 
Sbjct: 44  LATLTKLTQKLFDFSATRHARALFFSVPKPDIFLFNVLVRGFSLN-DSPSSSISLYTHLR 102

Query: 67  IKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSV---------SWSAMISGYIECGQL 117
                S +     F      A + D  L +   +S+           SA++  Y +  ++
Sbjct: 103 RNTNLSPDNFTYAFAVA---ACSNDKHLMLLHAHSIIDGYGSNVFVGSALVDLYCKFSRV 159

Query: 118 DKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSS 177
             A ++F   P +  V W  MI+G +K     N   +D ++L R M+  G+R ++S++++
Sbjct: 160 VYARKVFDGMPERDTVLWNTMINGLVK-----NCCFDDSIQLFREMVADGVRVDSSTVTA 214

Query: 178 VLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKD 237
           VL   + L  L++G  +  L  K         LT LIS+Y KCGD+  A  LF  I R D
Sbjct: 215 VLPAAAELQELKVGMGIQCLALKIGFGFCDYVLTGLISLYSKCGDVNTARLLFRRINRPD 274

Query: 238 VVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL----------LACNHAG 287
           ++ +NAMISG+  +G  E +++LF ++   G +  S T V L+          LAC+  G
Sbjct: 275 LIAYNAMISGFTANGGTECSVKLFRELLFSGERVSSSTIVGLIPLHSPFGHLHLACSIHG 334

Query: 288 L-------------------------VDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRA 322
                                     +DL    FD       +A     +  M+    + 
Sbjct: 335 FCVKSGIILNPTVSTAFTAIYNKLNEIDLARHLFDESPEKTVVA-----WNAMISGYTQN 389

Query: 323 GKLVEAVDLIKKM---PFKPQPAIFGTLLSACRVHKRLDLAEFAA--MNLFNLNPANAAG 377
           G    A+ L K+M    F P      T+LSAC     L   ++    +   NL P     
Sbjct: 390 GSTETAISLFKEMMKTEFTPNAVTITTILSACAQLGSLSFGKWVHHLIKSENLEP----N 445

Query: 378 CYVQ--LANIYAAMKKWDDVARIRLSMKENNVV 408
            YV   L ++YA      +  ++  SM E N V
Sbjct: 446 IYVSTALVDMYAKCGNISEAWQLFDSMSEKNTV 478


>gi|347954540|gb|AEP33770.1| organelle transcript processing 82, partial [Raphanus sativus]
          Length = 675

 Score =  420 bits (1080), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 230/581 (39%), Positives = 332/581 (57%), Gaps = 53/581 (9%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
            S+++ +A+  G L+DA+++FD     DVVS   +++    +  D  +A   F  +  +D
Sbjct: 103 TSLISMYARN-GGLEDARKVFDASSHRDVVSCTALITG-YASRGDFRSARKVFDEITERD 160

Query: 70  TASWNTMISGFVQKKNMAKARDLFLAM------PEKNSV--------------------S 103
             SWN MI+G+V+     +A +LF  M      P++ ++                    S
Sbjct: 161 VVSWNAMITGYVENGRYEEALELFKEMMRTNVRPDEGTLVSVVSACAQSGSIELGRQVHS 220

Query: 104 W-----------------SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFG 146
           W                 +A+I  Y +CG ++ A  LF+    K VV+W  +I GY    
Sbjct: 221 WVDDDDDDHGFSSSLKIVNALIDLYSKCGDVETAFGLFEGLSCKDVVSWNTLIGGY---- 276

Query: 147 YVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKS--PLC 204
               +  ++ L L + M+  G  PN  +L SVL  C+HL ++ +G+ +H  + K    + 
Sbjct: 277 -THTNLYKEALLLFQEMLRSGECPNDVTLLSVLPACAHLGAIDIGRWIHVYIDKKLKGVT 335

Query: 205 KDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKM 264
            +T+  T LI MY KCGD+E A ++F  +  + + +WNAMI G+A HG+   A  LF +M
Sbjct: 336 NETSLRTSLIDMYAKCGDIEAAHQVFNSMLYRSLSSWNAMIFGFAMHGRANAAFDLFSRM 395

Query: 265 KDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGK 324
           +   ++PD ITFV LL AC+H+GL+DLG Q F SM  DY +  K +HY CM+DLLG +G 
Sbjct: 396 RGNRVEPDDITFVGLLSACSHSGLLDLGRQIFKSMTQDYNLTPKLEHYGCMIDLLGHSGL 455

Query: 325 LVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLAN 384
             EA ++I  MP +P   I+ +LL AC+ H  L+LAE  A  L  + P N+ G YV L+N
Sbjct: 456 FKEAEEMIHTMPMEPDGVIWCSLLKACKKHGNLELAESFAQKLIKIEPENS-GSYVLLSN 514

Query: 385 IYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKE 444
           IYA   +W+DVAR+R  +    + K+PG S IEV +VVHEF  GD++HP    I+  L+E
Sbjct: 515 IYATAGRWEDVARVRGVLNGKGMKKVPGCSSIEVDSVVHEFIIGDKLHPRRREIYHMLEE 574

Query: 445 LEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRV 504
           ++ +++ AG+ PD    L  + EE KE  L  HSEKLAIAFGLI    GT + + KNLRV
Sbjct: 575 MDVQLEEAGFAPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRV 634

Query: 505 CGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           C +CH ATK IS I KREI+ RD TRFHHF+DG CSC DYW
Sbjct: 635 CRNCHEATKLISKIYKREIVARDRTRFHHFRDGVCSCCDYW 675



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 114/444 (25%), Positives = 178/444 (40%), Gaps = 120/444 (27%)

Query: 53  DDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPE----KNSVSW---- 104
           D +  A   F+ +   +   WNTM+ G     +   A ++++ M       NS S+    
Sbjct: 12  DGLPYAISVFETIQEPNLLIWNTMLRGHASSSDPVSALEMYVRMVSLGHLPNSYSFPFLL 71

Query: 105 -------------------------------SAMISGYIECGQLDKAVELFKVAPVKSVV 133
                                          +++IS Y   G L+ A ++F  +  + VV
Sbjct: 72  KSCAKSKAFEEGRQIHAQVLKLGCGLDRYVHTSLISMYARNGGLEDARKVFDASSHRDVV 131

Query: 134 AWTAMISGY--------------------------MKFGYVENSWAEDGLKLLRMMIGLG 167
           + TA+I+GY                          M  GYVEN   E+ L+L + M+   
Sbjct: 132 SCTALITGYASRGDFRSARKVFDEITERDVVSWNAMITGYVENGRYEEALELFKEMMRTN 191

Query: 168 IRPNASSLSSVLLGCSHLSSLQLGKQVHQLV--------FKSPLCKDTTALTPLISMYCK 219
           +RP+  +L SV+  C+   S++LG+QVH  V        F S L      +  LI +Y K
Sbjct: 192 VRPDEGTLVSVVSACAQSGSIELGRQVHSWVDDDDDDHGFSSSL----KIVNALIDLYSK 247

Query: 220 CGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVAL 279
           CGD+E A  LF  +  KDVV+WN +I GY      ++AL LF +M   G  P+ +T +++
Sbjct: 248 CGDVETAFGLFEGLSCKDVVSWNTLIGGYTHTNLYKEALLLFQEMLRSGECPNDVTLLSV 307

Query: 280 LLACNHAGLVDLGIQ---YFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 336
           L AC H G +D+G     Y D  +   G+  +    T ++D+  + G +  A  +   M 
Sbjct: 308 LPACAHLGAIDIGRWIHVYIDKKLK--GVTNETSLRTSLIDMYAKCGDIEAAHQVFNSML 365

Query: 337 FK----------------------------------PQPAIFGTLLSACRVHKRLDLAE- 361
           ++                                  P    F  LLSAC     LDL   
Sbjct: 366 YRSLSSWNAMIFGFAMHGRANAAFDLFSRMRGNRVEPDDITFVGLLSACSHSGLLDLGRQ 425

Query: 362 -FAAMNL-FNLNPA-NAAGCYVQL 382
            F +M   +NL P     GC + L
Sbjct: 426 IFKSMTQDYNLTPKLEHYGCMIDL 449


>gi|359480846|ref|XP_002280702.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Vitis vinifera]
          Length = 785

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 235/588 (39%), Positives = 344/588 (58%), Gaps = 51/588 (8%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M +K+T +WN++++    Q G +  AQ  F+++ + DVVS+N M+S    +  D   A D
Sbjct: 206 MKLKSTSSWNTMISSHM-QSGLVDLAQVQFEQMIERDVVSWNAMISGYNQHGFDR-EALD 263

Query: 61  FFQRL-------PIKDT---------------------------------ASWNTMISGF 80
            F ++       P K T                                 A  N +IS +
Sbjct: 264 IFSKMLMDSSSKPDKFTLASALSACANLENLKLGKQIHAHIIRTEFDTFGAVGNALISMY 323

Query: 81  VQKKNMAKARDLFLA--MPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAM 138
            +   +  A+ +     +   + ++++A++ GY++ G ++ A  +F    V+ VVAWTAM
Sbjct: 324 SKSGGVEIAQKIIEQSMISNLDVIAFTALLDGYVKLGDINPARRIFDSLRVRDVVAWTAM 383

Query: 139 ISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLV 198
           I      GYV+N + +D ++L R MI  G +PN  +L+++L   S L+SL  G+Q+H   
Sbjct: 384 I-----VGYVQNGFNQDAMELFRSMIKEGPKPNNYTLATMLSVSSSLASLDHGRQIHASA 438

Query: 199 FKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ-RKDVVTWNAMISGYAQHGKGEKA 257
            +S      +    LI+MY K G + DA  +F  I  ++D +TW +MI   AQHG GE+A
Sbjct: 439 TRSGNASSVSVSNALITMYAKSGSINDARWVFNLIHWKRDTITWTSMIIALAQHGLGEEA 498

Query: 258 LRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVD 317
           L LF++M + G+KPD IT+V +L AC H GLV+ G  Y++ M N + I   P HY CM+D
Sbjct: 499 LTLFERMLENGIKPDHITYVGVLSACTHVGLVEQGRSYYNLMQNAHKIIPTPSHYACMID 558

Query: 318 LLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAG 377
           L GRAG L EA   I+ MP +P    +G+LL++C+VHK ++LAE AA  L  + P N+ G
Sbjct: 559 LFGRAGLLQEAHAFIENMPIEPDVIAWGSLLASCKVHKNVELAEVAAERLLLIEPENS-G 617

Query: 378 CYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVS 437
            Y  LAN+Y+A  +W++ A IR SMK+  V K  G+SW+++   VH F   D +HP+  +
Sbjct: 618 AYSALANVYSACGQWENAANIRKSMKDKGVKKDQGFSWVQIKNKVHIFGVDDGLHPQRDA 677

Query: 438 IHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIR 497
           I+E + ++ K +K  G+VPD E  LH + EE+KEQ+L  HSEKLAIAFGLI  P  T +R
Sbjct: 678 IYEMMAKIWKEIKKMGFVPDTESVLHDLEEELKEQILSHHSEKLAIAFGLICTPENTTLR 737

Query: 498 VFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           + KNLRVC DCH A K+IS +  REIIVRD TRFHHFK+G CSC DYW
Sbjct: 738 IMKNLRVCNDCHSAIKFISKLVGREIIVRDATRFHHFKNGLCSCRDYW 785



 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 111/456 (24%), Positives = 186/456 (40%), Gaps = 139/456 (30%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPD-------VVSY------------ 41
           M VK+  +WN +L+G+AK  G+L++A  +F+++P+PD       +V Y            
Sbjct: 74  MPVKSVFSWNIILSGYAKG-GRLEEAHRVFEEMPEPDSVSWTAMIVGYNQMGQFENAIGM 132

Query: 42  -----------------NIMLSCI-----------------------------LLN---- 51
                            N++ SC                              LLN    
Sbjct: 133 FREMVSDDVPPTQFTLTNVLASCAAVECLGIGRKVHSFVVKHGLSSYISVANSLLNMYAK 192

Query: 52  SDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGY 111
           S D V A   F R+ +K T+SWNTMIS  +Q   +  A+  F  M E++ VSW+AMISGY
Sbjct: 193 SGDPVTAKIVFDRMKLKSTSSWNTMISSHMQSGLVDLAQVQFEQMIERDVVSWNAMISGY 252

Query: 112 IECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPN 171
            + G   +A+++F                                    +M++    +P+
Sbjct: 253 NQHGFDREALDIFS-----------------------------------KMLMDSSSKPD 277

Query: 172 ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCK-------------------------- 205
             +L+S L  C++L +L+LGKQ+H  + ++                              
Sbjct: 278 KFTLASALSACANLENLKLGKQIHAHIIRTEFDTFGAVGNALISMYSKSGGVEIAQKIIE 337

Query: 206 -------DTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKAL 258
                  D  A T L+  Y K GD+  A ++F  ++ +DVV W AMI GY Q+G  + A+
Sbjct: 338 QSMISNLDVIAFTALLDGYVKLGDINPARRIFDSLRVRDVVAWTAMIVGYVQNGFNQDAM 397

Query: 259 RLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDL 318
            LF  M  EG KP++ T   +L   +    +D G Q   S     G A+       ++ +
Sbjct: 398 ELFRSMIKEGPKPNNYTLATMLSVSSSLASLDHGRQIHASATRS-GNASSVSVSNALITM 456

Query: 319 LGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVH 354
             ++G + +A  +   + +K     + +++ A   H
Sbjct: 457 YAKSGSINDARWVFNLIHWKRDTITWTSMIIALAQH 492



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 81/269 (30%), Positives = 119/269 (44%), Gaps = 68/269 (25%)

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQL 117
           A   F  +P+K   SWN ++SG+ +   + +A  +F  MPE +SVSW+AMI GY + GQ 
Sbjct: 67  AHRVFDEMPVKSVFSWNIILSGYAKGGRLEEAHRVFEEMPEPDSVSWTAMIVGYNQMGQF 126

Query: 118 DKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSS 177
           + A+ +F                                    R M+   + P   +L++
Sbjct: 127 ENAIGMF------------------------------------REMVSDDVPPTQFTLTN 150

Query: 178 VLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGD------LEDACKL-- 229
           VL  C+ +  L +G++VH  V K  L    +    L++MY K GD      + D  KL  
Sbjct: 151 VLASCAAVECLGIGRKVHSFVVKHGLSSYISVANSLLNMYAKSGDPVTAKIVFDRMKLKS 210

Query: 230 -----------------------FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKM-K 265
                                  F ++  +DVV+WNAMISGY QHG   +AL +F KM  
Sbjct: 211 TSSWNTMISSHMQSGLVDLAQVQFEQMIERDVVSWNAMISGYNQHGFDREALDIFSKMLM 270

Query: 266 DEGMKPDSITFVALLLACNHAGLVDLGIQ 294
           D   KPD  T  + L AC +   + LG Q
Sbjct: 271 DSSSKPDKFTLASALSACANLENLKLGKQ 299



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 71/240 (29%), Positives = 126/240 (52%), Gaps = 11/240 (4%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVV 133
           N +++ + +   +  A  +F  MP K+  SW+ ++SGY + G+L++A  +F+  P    V
Sbjct: 52  NNLMNFYAKTGFIYDAHRVFDEMPVKSVFSWNIILSGYAKGGRLEEAHRVFEEMPEPDSV 111

Query: 134 AWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ 193
           +WTAMI GY + G  EN+     + + R M+   + P   +L++VL  C+ +  L +G++
Sbjct: 112 SWTAMIVGYNQMGQFENA-----IGMFREMVSDDVPPTQFTLTNVLASCAAVECLGIGRK 166

Query: 194 VHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGK 253
           VH  V K  L    +    L++MY K GD   A  +F  ++ K   +WN MIS + Q G 
Sbjct: 167 VHSFVVKHGLSSYISVANSLLNMYAKSGDPVTAKIVFDRMKLKSTSSWNTMISSHMQSGL 226

Query: 254 GEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYT 313
            + A   F++M    ++ D +++ A++   N  G     +  F  M+ D   ++KPD +T
Sbjct: 227 VDLAQVQFEQM----IERDVVSWNAMISGYNQHGFDREALDIFSKMLMDS--SSKPDKFT 280



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 38/112 (33%), Positives = 66/112 (58%), Gaps = 4/112 (3%)

Query: 191 GKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQ 250
           GK +H  + K+ L      +  L++ Y K G + DA ++F E+  K V +WN ++SGYA+
Sbjct: 32  GKSIHARIIKAGLHLGVFLMNNLMNFYAKTGFIYDAHRVFDEMPVKSVFSWNIILSGYAK 91

Query: 251 HGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVND 302
            G+ E+A R+F++M +    PDS+++ A+++  N  G  +  I  F  MV+D
Sbjct: 92  GGRLEEAHRVFEEMPE----PDSVSWTAMIVGYNQMGQFENAIGMFREMVSD 139


>gi|359473818|ref|XP_002263197.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Vitis vinifera]
          Length = 611

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 214/547 (39%), Positives = 325/547 (59%), Gaps = 45/547 (8%)

Query: 37  DVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM 96
           D+ ++NI+L+ + + SD +  A   F  +P ++T S+ T+I G+ +     +A +LF+ +
Sbjct: 72  DLFAWNILLN-MYVKSDFLCDASKLFDEMPERNTISFVTLIQGYAESVRFLEAIELFVRL 130

Query: 97  PEK---NSVSWSAMISG-----------------------------------YIECGQLD 118
             +   N  ++++++                                     Y +CG+++
Sbjct: 131 HREVLPNQFTFASVLQACATMEGLNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCGRME 190

Query: 119 KAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSV 178
            ++ELF  +P ++ V W  +I G+++ G       E  L+L   M+   ++    + SS 
Sbjct: 191 NSMELFAESPHRNDVTWNTVIVGHVQLGD-----GEKALRLFLNMLEYRVQATEVTYSSA 245

Query: 179 LLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDV 238
           L  C+ L++L+ G Q+H L  K+   KD      LI MY KCG ++DA  +F  + ++D 
Sbjct: 246 LRACASLAALEPGLQIHSLTVKTTFDKDIVVTNALIDMYAKCGSIKDARLVFDLMNKQDE 305

Query: 239 VTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDS 298
           V+WNAMISGY+ HG G +ALR+FDKM++  +KPD +TFV +L AC +AGL+D G  YF S
Sbjct: 306 VSWNAMISGYSMHGLGREALRIFDKMQETEVKPDKLTFVGVLSACANAGLLDQGQAYFTS 365

Query: 299 MVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLD 358
           M+ D+GI    +HYTCMV LLGR G L +AV LI ++PF+P   ++  LL AC +H  ++
Sbjct: 366 MIQDHGIEPCIEHYTCMVWLLGRGGHLDKAVKLIDEIPFQPSVMVWRALLGACVIHNDIE 425

Query: 359 LAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEV 418
           L   +A  +  + P + A  +V L+N+YA  K+WD+VA +R +MK   V K PG SWIE 
Sbjct: 426 LGRISAQRVLEMEPQDKA-THVLLSNMYATAKRWDNVASVRKNMKRKGVKKEPGLSWIES 484

Query: 419 GTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHS 478
              VH F  GD  HPE+  I+  L+ L  + K AGY+P+    L  V +E KE+LL  HS
Sbjct: 485 QGTVHSFTVGDTSHPEVRVINGMLEWLHMKTKKAGYIPNYNVVLLDVEDEEKERLLWVHS 544

Query: 479 EKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGT 538
           E+LA++FG+I+ P G+PIR+ KNLR+C DCH A K IS + +REI+VRD  RFHHF++G 
Sbjct: 545 ERLALSFGIIRTPSGSPIRIMKNLRICVDCHAAIKCISKVVQREIVVRDINRFHHFQEGL 604

Query: 539 CSCGDYW 545
           CSCGDYW
Sbjct: 605 CSCGDYW 611



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 85/168 (50%), Gaps = 2/168 (1%)

Query: 171 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 230
           N+ + ++ L  C        GK +H  + K   C D  A   L++MY K   L DA KLF
Sbjct: 37  NSHAYANALQDCIQKDEPSRGKGLHCEILKRGGCLDLFAWNILLNMYVKSDFLCDASKLF 96

Query: 231 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVD 290
            E+  ++ +++  +I GYA+  +  +A+ LF ++  E + P+  TF ++L AC     ++
Sbjct: 97  DEMPERNTISFVTLIQGYAESVRFLEAIELFVRLHREVL-PNQFTFASVLQACATMEGLN 155

Query: 291 LGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 338
           LG Q    ++   G+ +       ++D+  + G++  +++L  + P +
Sbjct: 156 LGNQIHCHVIK-IGLHSDVFVSNALMDVYAKCGRMENSMELFAESPHR 202


>gi|115471645|ref|NP_001059421.1| Os07g0299800 [Oryza sativa Japonica Group]
 gi|34394298|dbj|BAC84780.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610957|dbj|BAF21335.1| Os07g0299800 [Oryza sativa Japonica Group]
          Length = 673

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 224/533 (42%), Positives = 329/533 (61%), Gaps = 18/533 (3%)

Query: 25  DAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKK 84
           DA+  FD+IP P+ V    M S  + N + V  + + F+ +   D+AS     +  V   
Sbjct: 147 DARRAFDEIPDPNPVIVTAMASGYVRN-NLVYHSLELFRAMIASDSASVVDEAAALVAFS 205

Query: 85  NMAKARDLFLAMP----------EKNSVSWSAMISGYIECGQ--LDKAVELFKVAPVKSV 132
             A+  D  +             E+N+   + M+  Y + G   L+ A ++F     + V
Sbjct: 206 ASARVPDRGVTASLHALIAKIGFERNAGVVNTMLDSYAKGGSRDLEVARKVFDTME-RDV 264

Query: 133 VAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGK 192
           V+W +MI+ Y + G    S    GL    + +G GI+ NA +LS+VLL C+H  ++Q GK
Sbjct: 265 VSWNSMIALYAQNGM---SAEAIGLYSKMLNVGGGIKCNAVALSAVLLACAHAGAIQTGK 321

Query: 193 QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHG 252
           ++H  V +  L ++    T ++ MY KCG +E A + F +I+ K++++W+AMI+GY  HG
Sbjct: 322 RIHNQVVRMGLEENVYVGTSIVDMYSKCGRVEMASRAFRKIKEKNILSWSAMITGYGMHG 381

Query: 253 KGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY 312
           +G++AL +F +MK  G++P+ ITF+++L AC+HAGL+D G  ++++M  ++GI A  +HY
Sbjct: 382 RGQEALEIFTEMKRSGLRPNYITFISVLAACSHAGLLDEGRYWYNAMKQEFGIEAGVEHY 441

Query: 313 TCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNP 372
            CMVDLLGRAG L EA  LIK+M  KP  AI+G LLSACR+HK ++LAE +   LF L+ 
Sbjct: 442 GCMVDLLGRAGCLDEAYSLIKEMKVKPDAAIWGALLSACRIHKNVELAEMSVKRLFELDA 501

Query: 373 ANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVH 432
           +N +G YV L+NIYA  + W DV RIRL +K   + K PGYS  E+   ++ F  GD+ H
Sbjct: 502 SN-SGYYVLLSNIYAEARMWKDVERIRLLVKTRRIEKPPGYSSFELKGKIYLFYVGDKSH 560

Query: 433 PELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPL 492
           P+ + I+  L++L +RM+ AGYVP+    LH + EE KE  L  HSEKLA+AF L+    
Sbjct: 561 PQHIEIYSYLEKLLERMQEAGYVPNTGSVLHDLDEEEKESALRIHSEKLAVAFALMNSVP 620

Query: 493 GTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
            + I + KNLRVC DCH A K+I+ I +REII+RD  RFHHFKDG CSC DYW
Sbjct: 621 RSVIHIIKNLRVCSDCHTAMKFITKITEREIIIRDLQRFHHFKDGLCSCRDYW 673



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 76/249 (30%), Positives = 121/249 (48%), Gaps = 27/249 (10%)

Query: 103 SWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRM 162
           S SA++  Y  C +   A   F   P  + V  TAM S     GYV N+     L+L R 
Sbjct: 131 SASALLHMYHHCSRPMDARRAFDEIPDPNPVIVTAMAS-----GYVRNNLVYHSLELFRA 185

Query: 163 MIGLGIRPNASSLSSVLLGCSHLSSLQLGKQV---------HQLVFKSPLCKDTTALTPL 213
           MI       AS  +SV+   + L +     +V         H L+ K    ++   +  +
Sbjct: 186 MI-------ASDSASVVDEAAALVAFSASARVPDRGVTASLHALIAKIGFERNAGVVNTM 238

Query: 214 ISMYCKCG--DLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKD--EGM 269
           +  Y K G  DLE A K+F  ++R DVV+WN+MI+ YAQ+G   +A+ L+ KM +   G+
Sbjct: 239 LDSYAKGGSRDLEVARKVFDTMER-DVVSWNSMIALYAQNGMSAEAIGLYSKMLNVGGGI 297

Query: 270 KPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAV 329
           K +++   A+LLAC HAG +  G +  + +V   G+       T +VD+  + G++  A 
Sbjct: 298 KCNAVALSAVLLACAHAGAIQTGKRIHNQVVR-MGLEENVYVGTSIVDMYSKCGRVEMAS 356

Query: 330 DLIKKMPFK 338
              +K+  K
Sbjct: 357 RAFRKIKEK 365


>gi|413952892|gb|AFW85541.1| hypothetical protein ZEAMMB73_780855 [Zea mays]
          Length = 787

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 228/538 (42%), Positives = 326/538 (60%), Gaps = 24/538 (4%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTAS-WNTMISG 79
           G +  AQ LFD++  PD+V+YN ++S   +N   V ++ + F+ L    TAS W    S 
Sbjct: 261 GDMDSAQFLFDRMDNPDLVAYNALISGYSVNGM-VESSVELFKEL----TASGWRPNSST 315

Query: 80  FVQ---------KKNMAKARDLFL--AMPEKNSVSWSAMISGYIECGQLDKAVELFKVAP 128
            V           + +A+    F+  A  + +++  +A+ + Y     ++ A  +F    
Sbjct: 316 LVAVIPVYSPFGHELLARCLHAFVVKARLDADALVSTALTTLYCRLNDMESARSIFDAML 375

Query: 129 VKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSL 188
            K++ +W AMISGY      +N   E  + L ++M  L ++PN  ++SS L  C+HL +L
Sbjct: 376 EKTMESWNAMISGY-----AQNGLTEMAVALFQLMQELNVQPNPITISSTLSACAHLGAL 430

Query: 189 QLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGY 248
            LGK VH+++ K  L  +   +T LI MY KCG + +A  +F  +  K+VV+WNAMISGY
Sbjct: 431 SLGKWVHRIISKEKLELNVYVMTALIDMYAKCGSIAEARSIFDRMDNKNVVSWNAMISGY 490

Query: 249 AQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK 308
             HG+G +AL+L+  M D  + P S TF++++ AC+H GLVD G + F  M N+Y I   
Sbjct: 491 GLHGQGAEALKLYKDMLDARILPTSSTFLSVIYACSHGGLVDEGQKVFRVMTNEYRITPG 550

Query: 309 PDHYTCMVDLLGRAGKLVEAVDLIKKMPFKP-QPAIFGTLLSACRVHKRLDLAEFAAMNL 367
            +H TCMVDLLGRAGKL EA++LI + P     P ++G LL AC VHK  DLA+ A+  L
Sbjct: 551 IEHCTCMVDLLGRAGKLNEALELISEFPQSAIGPGVWGALLGACMVHKNSDLAKLASQKL 610

Query: 368 FNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRS 427
           F L+  NA G YV L+N+Y + K + + A +R   K   +VK PG + IE+G   H F +
Sbjct: 611 FELDSENA-GYYVLLSNLYTSKKHYSEAAVVRQEAKTRKLVKTPGCTLIEIGDRPHVFMA 669

Query: 428 GDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGL 487
           GD +HP+  +I+  L+ L  +M  AGY P  E AL+ V EE KE ++  HSEKLAIAFGL
Sbjct: 670 GDHLHPQSEAIYSYLERLTAKMIEAGYQPVTEAALYDVEEEEKEHMVKVHSEKLAIAFGL 729

Query: 488 IKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           +    GT IR+ KNLRVC DCH ATK+IS + +R I+VRD +RFHHF+DG CSCGDYW
Sbjct: 730 LSTEPGTEIRIIKNLRVCLDCHNATKFISKVTQRLIVVRDASRFHHFRDGVCSCGDYW 787



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 98/334 (29%), Positives = 169/334 (50%), Gaps = 20/334 (5%)

Query: 11  SVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAF----DFFQRLP 66
           S LA    +  +  DA+++FD +P PD + +N +L+   L   + + AF    D  +  P
Sbjct: 153 SALAKLYFKLSRGDDARKVFDTVPSPDTILWNTLLAG--LPGSEALEAFVRMVDAGRVRP 210

Query: 67  IKDTASWNTMISGFVQKKNMAKAR-----DLFLAMPEKNSVSWSAMISGYIECGQLDKAV 121
             D+ +  + +    +  +MA  R      +   + E   V  + ++S Y +CG +D A 
Sbjct: 211 --DSTTLASSLRAAAEASHMAMGRCVHGYGVKCGLAEHEHVV-TGLMSLYSKCGDMDSAQ 267

Query: 122 ELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLG 181
            LF       +VA+ A+ISGY   G VE+S     ++L + +   G RPN+S+L +V+  
Sbjct: 268 FLFDRMDNPDLVAYNALISGYSVNGMVESS-----VELFKELTASGWRPNSSTLVAVIPV 322

Query: 182 CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTW 241
            S      L + +H  V K+ L  D    T L ++YC+  D+E A  +F  +  K + +W
Sbjct: 323 YSPFGHELLARCLHAFVVKARLDADALVSTALTTLYCRLNDMESARSIFDAMLEKTMESW 382

Query: 242 NAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN 301
           NAMISGYAQ+G  E A+ LF  M++  ++P+ IT  + L AC H G + LG ++   +++
Sbjct: 383 NAMISGYAQNGLTEMAVALFQLMQELNVQPNPITISSTLSACAHLGALSLG-KWVHRIIS 441

Query: 302 DYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335
              +       T ++D+  + G + EA  +  +M
Sbjct: 442 KEKLELNVYVMTALIDMYAKCGSIAEARSIFDRM 475



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 73/280 (26%), Positives = 125/280 (44%), Gaps = 41/280 (14%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI 164
           SA+   Y +  + D A ++F   P    + W  +++G      +E          +RM+ 
Sbjct: 153 SALAKLYFKLSRGDDARKVFDTVPSPDTILWNTLLAGLPGSEALE--------AFVRMVD 204

Query: 165 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 224
              +RP++++L+S L   +  S + +G+ VH    K  L +    +T L+S+Y KCGD++
Sbjct: 205 AGRVRPDSTTLASSLRAAAEASHMAMGRCVHGYGVKCGLAEHEHVVTGLMSLYSKCGDMD 264

Query: 225 DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVA------ 278
            A  LF  +   D+V +NA+ISGY+ +G  E ++ LF ++   G +P+S T VA      
Sbjct: 265 SAQFLFDRMDNPDLVAYNALISGYSVNGMVESSVELFKELTASGWRPNSSTLVAVIPVYS 324

Query: 279 -----LLLACNHA----------GLVDLGIQYFDSMVNDYGIAAK---------PDHYTC 314
                LL  C HA           LV   +      +ND   A            + +  
Sbjct: 325 PFGHELLARCLHAFVVKARLDADALVSTALTTLYCRLNDMESARSIFDAMLEKTMESWNA 384

Query: 315 MVDLLGRAGKLVEAV---DLIKKMPFKPQPAIFGTLLSAC 351
           M+    + G    AV    L++++  +P P    + LSAC
Sbjct: 385 MISGYAQNGLTEMAVALFQLMQELNVQPNPITISSTLSAC 424



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 65/270 (24%), Positives = 115/270 (42%), Gaps = 59/270 (21%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIP----QPDVVSYNIMLS-CILLNSDDVVAA 58
           KT  +WN++++G+A Q G  + A  LF  +     QP+ ++ +  LS C  L +   ++ 
Sbjct: 377 KTMESWNAMISGYA-QNGLTEMAVALFQLMQELNVQPNPITISSTLSACAHLGA---LSL 432

Query: 59  FDFFQRLPIKDTASWN-----TMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE 113
             +  R+  K+    N      +I  + +  ++A+AR +F  M  KN VSW+AMISGY  
Sbjct: 433 GKWVHRIISKEKLELNVYVMTALIDMYAKCGSIAEARSIFDRMDNKNVVSWNAMISGYGL 492

Query: 114 CGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNAS 173
            GQ                                      + LKL + M+   I P +S
Sbjct: 493 HGQ------------------------------------GAEALKLYKDMLDARILPTSS 516

Query: 174 SLSSVLLGCSHLSSLQLGKQVHQLVFK----SPLCKDTTALTPLISMYCKCGDLEDACKL 229
           +  SV+  CSH   +  G++V +++      +P  +  T +  L+    + G L +A +L
Sbjct: 517 TFLSVIYACSHGGLVDEGQKVFRVMTNEYRITPGIEHCTCMVDLLG---RAGKLNEALEL 573

Query: 230 FLEIQRKDV--VTWNAMISGYAQHGKGEKA 257
             E  +  +    W A++     H   + A
Sbjct: 574 ISEFPQSAIGPGVWGALLGACMVHKNSDLA 603



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 76/169 (44%), Gaps = 15/169 (8%)

Query: 191 GKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQ 250
            + +H L   +    DT   + L  +Y K    +DA K+F  +   D + WN +++G   
Sbjct: 133 ARTLHGLSVAAGYAADTFVASALAKLYFKLSRGDDARKVFDTVPSPDTILWNTLLAGL-- 190

Query: 251 HGKGEKALRLFDKMKDEG-MKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIA--- 306
              G +AL  F +M D G ++PDS T  + L A   A  + +G       V+ YG+    
Sbjct: 191 --PGSEALEAFVRMVDAGRVRPDSTTLASSLRAAAEASHMAMG-----RCVHGYGVKCGL 243

Query: 307 AKPDH-YTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVH 354
           A+ +H  T ++ L  + G +  A  L  +M   P    +  L+S   V+
Sbjct: 244 AEHEHVVTGLMSLYSKCGDMDSAQFLFDRMD-NPDLVAYNALISGYSVN 291


>gi|449458783|ref|XP_004147126.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 228/546 (41%), Positives = 325/546 (59%), Gaps = 14/546 (2%)

Query: 7   VNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSD--DVVAAFDFFQR 64
           VN ++ LA    + G ++ A+ +FD + Q  VVS+N M+   + N +    +A F+    
Sbjct: 283 VNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLE 342

Query: 65  LPIKDTA-SWNTMISGFVQKKNMAKARDLFLAMPEKNSVS----WSAMISGYIECGQLDK 119
             I  T  +    +       ++ + + +   + + N  S     +++IS Y +C ++D 
Sbjct: 343 EGIDPTGVTIMEALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDI 402

Query: 120 AVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVL 179
           A ++F     ++ V+W AMI      GY +N    + L     M  LG++P++ ++ SV+
Sbjct: 403 ASDIFNNLNGRTHVSWNAMI-----LGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVI 457

Query: 180 LGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVV 239
              + LS  +  K +H L+ +S L K+    T L+ MY KCG +  A KLF  I  + V+
Sbjct: 458 PALAELSVTRHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFDMISDRHVI 517

Query: 240 TWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSM 299
           TWNAMI GY  HG G  AL LFDKMK   ++P+ IT+++++ AC+H+GLVD G+++F SM
Sbjct: 518 TWNAMIDGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVISACSHSGLVDEGLRHFKSM 577

Query: 300 VNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDL 359
             DYG+    DHY  MVDLLGRAG++ EA D I+ MP  P   ++G    AC++HK +++
Sbjct: 578 KQDYGLEPSMDHYGAMVDLLGRAGRIKEAWDFIENMPISPGITVYGAXXGACKIHKNIEV 637

Query: 360 AEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVG 419
            E AA  LF LNP +  G +V LANIYA+  KW  VA +R +M++  + K PG S +E+ 
Sbjct: 638 GEKAAKKLFELNP-DEGGYHVLLANIYASTSKWSKVAEVRKTMEKKGLKKTPGCSVVELR 696

Query: 420 TVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSE 479
             VH F SG   HP+   I+  L+EL   +K AGYVPD    L  V ++V+EQLL  HSE
Sbjct: 697 NEVHSFYSGSTTHPQSKRIYAFLEELVYEIKAAGYVPDTNLILD-VEDDVQEQLLNSHSE 755

Query: 480 KLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTC 539
           KLAIAFGL+    GT I V KNLRVCGDCH ATKYIS +  REIIVRD  RFHHFK+G C
Sbjct: 756 KLAIAFGLLNTSPGTTIHVRKNLRVCGDCHNATKYISLVTGREIIVRDMQRFHHFKNGIC 815

Query: 540 SCGDYW 545
           SCGDYW
Sbjct: 816 SCGDYW 821



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 121/455 (26%), Positives = 198/455 (43%), Gaps = 100/455 (21%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELF----DKIPQPDVVSYNIMLSCILLNSDDV- 55
           M  +  V+WN+++AGF+ Q G  K A EL     D+  +PD    +I L  +L  + DV 
Sbjct: 208 MPERDLVSWNTIIAGFS-QNGFAKKALELVLRMQDEGQRPD----SITLVTVLPAAADVG 262

Query: 56  -----VAAFDFFQRLPIKDTASWNTMISGFVQK-KNMAKARDLFLAMPEKNSVSWSAMIS 109
                 +   +  R       + +T ++    K  ++  AR +F  M +K  VSW++M+ 
Sbjct: 263 LLMVGKSIHGYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMD 322

Query: 110 GYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIR 169
           GY++ G+ +KA+ +F+                                     M+  GI 
Sbjct: 323 GYVQNGEPEKAIAVFE------------------------------------KMLEEGID 346

Query: 170 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 229
           P   ++   L  C+ L  L+ GK VH+ V +  L  D + +  LISMY KC  ++ A  +
Sbjct: 347 PTGVTIMEALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDI 406

Query: 230 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA------C 283
           F  +  +  V+WNAMI GYAQ+G+  +AL  F +MK  GMKPDS T V+++ A       
Sbjct: 407 FNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSVT 466

Query: 284 NHA-----------------------------GLVDLGIQYFDSMVNDYGIAAKPDHYTC 314
            HA                             G + +  + FD M++D  +      +  
Sbjct: 467 RHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFD-MISDRHVIT----WNA 521

Query: 315 MVDLLGRAGKLVEAVDLIKKM---PFKPQPAIFGTLLSACRVHKRLD--LAEFAAMNL-F 368
           M+D  G  G    A+DL  KM     +P    + +++SAC     +D  L  F +M   +
Sbjct: 522 MIDGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVISACSHSGLVDEGLRHFKSMKQDY 581

Query: 369 NLNPA-NAAGCYVQLANIYAAMKK-WDDVARIRLS 401
            L P+ +  G  V L      +K+ WD +  + +S
Sbjct: 582 GLEPSMDHYGAMVDLLGRAGRIKEAWDFIENMPIS 616



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 77/292 (26%), Positives = 146/292 (50%), Gaps = 14/292 (4%)

Query: 9   WNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK 68
           + + L     + G + +A  +F+ I       Y+ ML     NS  +  A  F  R+   
Sbjct: 83  FQTKLVSLFSKYGSINEAARVFEPIDDKLDALYHTMLKGYAKNSS-LETALAFLCRMRYD 141

Query: 69  DTA----SWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISGYIECGQLDKA 120
           D      ++  ++       ++ + +++   +       N  + + +++ Y +C Q+D A
Sbjct: 142 DVKPVVYNFTYLLKVCGDNADLKRGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDA 201

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLL 180
            ++F   P + +V+W  +I+G+      +N +A+  L+L+  M   G RP++ +L +VL 
Sbjct: 202 YKMFDRMPERDLVSWNTIIAGFS-----QNGFAKKALELVLRMQDEGQRPDSITLVTVLP 256

Query: 181 GCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVT 240
             + +  L +GK +H    ++   K     T L  MY KCG +E A  +F  + +K VV+
Sbjct: 257 AAADVGLLMVGKSIHGYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMDQKTVVS 316

Query: 241 WNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 292
           WN+M+ GY Q+G+ EKA+ +F+KM +EG+ P  +T +  L AC   G ++ G
Sbjct: 317 WNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGDLERG 368



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 68/228 (29%), Positives = 120/228 (52%), Gaps = 7/228 (3%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI 164
           + ++S + + G +++A  +F+    K    +  M+ GY K     NS  E  L  L  M 
Sbjct: 85  TKLVSLFSKYGSINEAARVFEPIDDKLDALYHTMLKGYAK-----NSSLETALAFLCRMR 139

Query: 165 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 224
              ++P   + + +L  C   + L+ GK++H  +  +    +  A+T +++MY KC  ++
Sbjct: 140 YDDVKPVVYNFTYLLKVCGDNADLKRGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQID 199

Query: 225 DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 284
           DA K+F  +  +D+V+WN +I+G++Q+G  +KAL L  +M+DEG +PDSIT V +L A  
Sbjct: 200 DAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAA 259

Query: 285 HAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLI 332
             GL+ +G       +   G A   +  T + D+  + G  VE   LI
Sbjct: 260 DVGLLMVGKSIHGYAIR-AGFAKLVNISTALADMYSKCGS-VETARLI 305



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 38/148 (25%), Positives = 72/148 (48%), Gaps = 4/148 (2%)

Query: 192 KQVHQ---LVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGY 248
           K++HQ   LV K+ L  +    T L+S++ K G + +A ++F  I  K    ++ M+ GY
Sbjct: 63  KELHQIIPLVIKNGLYNEHLFQTKLVSLFSKYGSINEAARVFEPIDDKLDALYHTMLKGY 122

Query: 249 AQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK 308
           A++   E AL    +M+ + +KP    F  LL  C     +  G +    ++ +   AA 
Sbjct: 123 AKNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGKEIHGQLITN-SFAAN 181

Query: 309 PDHYTCMVDLLGRAGKLVEAVDLIKKMP 336
               T +V++  +  ++ +A  +  +MP
Sbjct: 182 VFAMTGVVNMYAKCRQIDDAYKMFDRMP 209


>gi|255581962|ref|XP_002531779.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223528572|gb|EEF30593.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 518

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 208/325 (64%), Positives = 244/325 (75%), Gaps = 27/325 (8%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M +KTTV WNS+LAG++++RGK+K+A+ELFDKIP+PD +SYN ML+C + NSD +  A  
Sbjct: 113 MTIKTTVTWNSILAGYSRKRGKMKNARELFDKIPEPDTISYNTMLACYVHNSD-MEKAQA 171

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
           FF  +P KD ASWNT+ISGF Q   MAKA  LFL MP KN V+W+AMISGYI CG L  A
Sbjct: 172 FFDLIPNKDPASWNTLISGFSQNGKMAKAHKLFLQMPYKNVVTWNAMISGYIACGDLTSA 231

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGYV--------------------------ENSWAE 154
            +LFK  PVK+VVA TAMI+GYMK G++                          ENS AE
Sbjct: 232 WKLFKTMPVKNVVACTAMITGYMKLGFIKLAEKLFKEMSTDNVVTWNAMISGFIENSRAE 291

Query: 155 DGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLI 214
           DG+KL R M+G GIRPN S+LSS+LLGCS LS+LQLG+QVHQLV KSPL  D TA T L+
Sbjct: 292 DGVKLFRTMVGFGIRPNPSTLSSLLLGCSELSALQLGRQVHQLVCKSPLASDMTAGTSLV 351

Query: 215 SMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSI 274
           SMYCKCGDLEDA KLFLE+ RKDVVTWNAMISGYA HG GEKALRLFD+MK EG+ PD I
Sbjct: 352 SMYCKCGDLEDAWKLFLELPRKDVVTWNAMISGYALHGAGEKALRLFDEMKKEGITPDWI 411

Query: 275 TFVALLLACNHAGLVDLGIQYFDSM 299
           TFVA+LLACNHAG  DLG++YF SM
Sbjct: 412 TFVAVLLACNHAGFADLGLKYFHSM 436



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 80/304 (26%), Positives = 140/304 (46%), Gaps = 46/304 (15%)

Query: 67  IKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISG---------------- 110
           + D    N +I+ F++  ++  A +LF  M  K +V+W+++++G                
Sbjct: 84  VNDVILSNQVITSFIRSGDLDSALELFNNMTIKTTVTWNSILAGYSRKRGKMKNARELFD 143

Query: 111 ----------------YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAE 154
                           Y+    ++KA   F + P K   +W  +ISG+ + G +    A+
Sbjct: 144 KIPEPDTISYNTMLACYVHNSDMEKAQAFFDLIPNKDPASWNTLISGFSQNGKM----AK 199

Query: 155 DGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLI 214
                L+M     +  NA  + S  + C  L+S          +FK+   K+  A T +I
Sbjct: 200 AHKLFLQMPYKNVVTWNA--MISGYIACGDLTSA-------WKLFKTMPVKNVVACTAMI 250

Query: 215 SMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSI 274
           + Y K G ++ A KLF E+   +VVTWNAMISG+ ++ + E  ++LF  M   G++P+  
Sbjct: 251 TGYMKLGFIKLAEKLFKEMSTDNVVTWNAMISGFIENSRAEDGVKLFRTMVGFGIRPNPS 310

Query: 275 TFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKK 334
           T  +LLL C+    + LG Q    +V    +A+     T +V +  + G L +A  L  +
Sbjct: 311 TLSSLLLGCSELSALQLGRQ-VHQLVCKSPLASDMTAGTSLVSMYCKCGDLEDAWKLFLE 369

Query: 335 MPFK 338
           +P K
Sbjct: 370 LPRK 373


>gi|147857367|emb|CAN80796.1| hypothetical protein VITISV_034275 [Vitis vinifera]
          Length = 771

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 234/555 (42%), Positives = 331/555 (59%), Gaps = 23/555 (4%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLS-CILLNSDDVVAAF 59
           M V TT    ++L  +AK  G L  A++LF+ + Q  VVS+  M++ CI   S+ +    
Sbjct: 230 MGVPTTT---ALLDMYAKC-GHLGLARQLFNGLTQKTVVSWTAMIAGCI--RSNRLEEGT 283

Query: 60  DFFQRLPIKDT-ASWNTMIS-----GFVQKKNMAKARDLFLAMPEKNSVSW---SAMISG 110
             F R+  ++   +  TM+S     GF     + K    ++ +    SVS    +A++  
Sbjct: 284 KLFIRMQEENIFPNEITMLSLIVECGFTGALQLGKQLHAYI-LRNGFSVSLALATALVDM 342

Query: 111 YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRP 170
           Y +C  +  A  LF     + V+ WTAM+S Y +   ++ ++      L   M   G+RP
Sbjct: 343 YGKCSDIRNARALFDSTQNRDVMIWTAMLSAYAQANCIDQAF-----NLFDQMRTSGVRP 397

Query: 171 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 230
              ++ S+L  C+   +L LGK VH  + K  +  D    T L+ MY KCGD+  A +LF
Sbjct: 398 TKVTIVSLLSLCAVAGALDLGKWVHSYIDKERVEVDCILNTALVDMYAKCGDINAAGRLF 457

Query: 231 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVD 290
           +E   +D+  WNA+I+G+A HG GE+AL +F +M+ +G+KP+ ITF+ LL AC+HAGLV 
Sbjct: 458 IEAISRDICMWNAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVT 517

Query: 291 LGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSA 350
            G + F+ MV+ +G+  + +HY CMVDLLGRAG L EA ++IK MP KP   ++G L++A
Sbjct: 518 EGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGALVAA 577

Query: 351 CRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKM 410
           CR+HK   L E AA  L  + P N  G  V ++NIYAA  +W D A +R +MK   + K 
Sbjct: 578 CRLHKNPQLGELAATQLLEIEPEN-CGYNVLMSNIYAAANRWSDAAGVRKTMKTVGMKKE 636

Query: 411 PGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVK 470
           PG+S IEV   VHEF  GD+ HP++  I+E L E+ +++  AGYVPD    L  + EE K
Sbjct: 637 PGHSVIEVNGTVHEFLMGDQSHPQIRRINEMLAEMRRKLNEAGYVPDTSTVLLNIDEEEK 696

Query: 471 EQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTR 530
           E  L +HSEKLA+AFGLI     TPIR+ KNLRVC DCH ATK +S I  R IIVRD  R
Sbjct: 697 ETALTYHSEKLAMAFGLISTAPSTPIRIVKNLRVCNDCHAATKLLSKIYGRVIIVRDRNR 756

Query: 531 FHHFKDGTCSCGDYW 545
           FHHF++G CSCGDYW
Sbjct: 757 FHHFREGYCSCGDYW 771



 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 97/314 (30%), Positives = 163/314 (51%), Gaps = 19/314 (6%)

Query: 26  AQELFDKIPQPDVVSYNIMLSCILLNSD-----DVVAAFDFFQRLPIKDTASWNTMISGF 80
           A+ +FDK+ + DVVS++ M+  +  N +     +++   +F Q  P     +  +M++ F
Sbjct: 148 ARLVFDKMMERDVVSWSTMIRSLSRNKEFDMALELIREMNFMQVRP--SEVAMVSMVNLF 205

Query: 81  VQKKN--MAKARDLFLAMPEKNS----VSWSAMISGYIECGQLDKAVELFKVAPVKSVVA 134
               N  M KA   ++     N      + +A++  Y +CG L  A +LF     K+VV+
Sbjct: 206 ADTANMRMGKAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVS 265

Query: 135 WTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQV 194
           WTAMI+G ++   +     E+G KL   M    I PN  ++ S+++ C    +LQLGKQ+
Sbjct: 266 WTAMIAGCIRSNRL-----EEGTKLFIRMQEENIFPNEITMLSLIVECGFTGALQLGKQL 320

Query: 195 HQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKG 254
           H  + ++         T L+ MY KC D+ +A  LF   Q +DV+ W AM+S YAQ    
Sbjct: 321 HAYILRNGFSVSLALATALVDMYGKCSDIRNARALFDSTQNRDVMIWTAMLSAYAQANCI 380

Query: 255 EKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTC 314
           ++A  LFD+M+  G++P  +T V+LL  C  AG +DLG ++  S ++   +       T 
Sbjct: 381 DQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLG-KWVHSYIDKERVEVDCILNTA 439

Query: 315 MVDLLGRAGKLVEA 328
           +VD+  + G +  A
Sbjct: 440 LVDMYAKCGDINAA 453



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 83/303 (27%), Positives = 150/303 (49%), Gaps = 27/303 (8%)

Query: 72  SWNTM---ISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAP 128
           SW  +   I GFV KK +   RD+F+          +A++  Y EC  ++ A  +F    
Sbjct: 108 SWTQLGKEIHGFVLKKGLD--RDVFVG---------NALMLMYGECACVEYARLVFDKMM 156

Query: 129 VKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSL 188
            + VV+W+ MI    +     N   +  L+L+R M  + +RP+  ++ S++   +  +++
Sbjct: 157 ERDVVSWSTMIRSLSR-----NKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANM 211

Query: 189 QLGKQVHQLVFKSPLCKD--TTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMIS 246
           ++GK +H  V ++   +       T L+ MY KCG L  A +LF  + +K VV+W AMI+
Sbjct: 212 RMGKAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIA 271

Query: 247 GYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIA 306
           G  +  + E+  +LF +M++E + P+ IT ++L++ C   G + LG Q    ++ + G +
Sbjct: 272 GCIRSNRLEEGTKLFIRMQEENIFPNEITMLSLIVECGFTGALQLGKQLHAYILRN-GFS 330

Query: 307 AKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMN 366
                 T +VD+ G+   +  A  L      +    I+  +LSA      +D     A N
Sbjct: 331 VSLALATALVDMYGKCSDIRNARALFDSTQNR-DVMIWTAMLSAYAQANCID----QAFN 385

Query: 367 LFN 369
           LF+
Sbjct: 386 LFD 388



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 58/104 (55%)

Query: 177 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK 236
           SVL  C  +S  QLGK++H  V K  L +D      L+ MY +C  +E A  +F ++  +
Sbjct: 99  SVLKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMER 158

Query: 237 DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 280
           DVV+W+ MI   +++ + + AL L  +M    ++P  +  V+++
Sbjct: 159 DVVSWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMV 202


>gi|449447363|ref|XP_004141438.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Cucumis sativus]
          Length = 1573

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 218/517 (42%), Positives = 306/517 (59%), Gaps = 46/517 (8%)

Query: 69   DTASWNTMISGFVQKKNMAKARDLFLAMPEK----------------------------- 99
            D ASWN ++ G+++     KA + F  M E                              
Sbjct: 1063 DLASWNAIMFGYIKSNKSRKALEHFSLMHEMGIPIDEITLATAIKASGCLINLKQGKQIQ 1122

Query: 100  --------NSVSW--SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVE 149
                    N+  W  S ++  YI+CG +  A+ELF        VAWT MISGY     +E
Sbjct: 1123 AYAIKLGFNNDLWVSSGVLDMYIKCGDMPNALELFGEISRPDEVAWTTMISGY-----IE 1177

Query: 150  NSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTA 209
            N   +  L +  +M   G++P+  + ++++   S L++L+ GKQ+H  V K     D   
Sbjct: 1178 NGDEDHALSVYHLMRVSGVQPDEYTFATLIKASSCLTALEQGKQIHANVVKLDYSLDHFV 1237

Query: 210  LTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGM 269
             T L+ MYCKCG ++DA ++F ++  + VV WNAM+ G AQHG  ++AL LF  M+  G+
Sbjct: 1238 GTSLVDMYCKCGSVQDAYRVFRKMDVRKVVFWNAMLLGLAQHGHVDEALNLFRTMQSNGI 1297

Query: 270  KPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAV 329
            +PD +TF+ +L AC+H+GL     +YFD+M   YGI  + +HY+C+VD LGRAG++ EA 
Sbjct: 1298 QPDKVTFIGVLSACSHSGLFSEAYKYFDAMFKTYGITPEIEHYSCLVDALGRAGRIQEAE 1357

Query: 330  DLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAM 389
            ++I  MPFK   +++  LL ACR     + A+  A  L  L+P++++  YV L+NIYAA 
Sbjct: 1358 NVIASMPFKASASMYRALLGACRTKGDAETAKRVADKLLALDPSDSS-AYVLLSNIYAAS 1416

Query: 390  KKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRM 449
            ++WDDV   R  MK  NV K PG+SWI+V   VH F   DR HP+   I+EK+++L KR+
Sbjct: 1417 RQWDDVTDARNMMKLKNVKKDPGFSWIDVKNKVHLFVVDDRSHPQASLIYEKIEDLMKRI 1476

Query: 450  KLAG-YVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDC 508
            +  G YVPD +F L  V EE KE+ L +HSEKLAIAFGLI  P    IRV KNLRVCGDC
Sbjct: 1477 REEGSYVPDTDFTLLDVEEEEKERALYYHSEKLAIAFGLISTPPSATIRVIKNLRVCGDC 1536

Query: 509  HRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
            H A K IS + +REI++RD  RFHHF++GTCSCGDYW
Sbjct: 1537 HSAIKCISKLTQREIVLRDANRFHHFRNGTCSCGDYW 1573



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 90/327 (27%), Positives = 143/327 (43%), Gaps = 59/327 (18%)

Query: 21   GKLKDAQELFDKIPQPDVVSYNIMLSCILLNS--DDVVAAFDFFQRLPI-KDTASWNTMI 77
            G +  A+ LFDK+P+ D V +N+ML   + NS  D+ +  F  F R     D ++ + +I
Sbjct: 766  GLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFFSAFHRSGFFPDFSNLHCVI 825

Query: 78   SGFVQ----------KKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVA 127
             G             ++  A A  +F      N  +W+  ++ ++  GQ+  A++ FK  
Sbjct: 826  GGVNSDVSNNRKRHAEQVKAYAMKMFPFDQGSNIFAWNKKLTEFLHAGQIVAAIDCFKT- 884

Query: 128  PVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSS 187
                                           LLR  IG     ++ +L  +L        
Sbjct: 885  -------------------------------LLRSTIG----HDSVTLVIILSAAVGADD 909

Query: 188  LQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISG 247
            L LG+Q+H LV KS           L++MY K G +  A K F+     D+++WN MIS 
Sbjct: 910  LDLGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISS 969

Query: 248  YAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFD--SMVNDY-- 303
            YAQ+    +A+  F  +  +G+KPD  T  ++L AC+     D G +YF   S V+ Y  
Sbjct: 970  YAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTG---DEG-EYFTLGSQVHVYAI 1025

Query: 304  --GIAAKPDHYTCMVDLLGRAGKLVEA 328
              GI       T ++DL  + GK+ EA
Sbjct: 1026 KCGIINDSFVSTALIDLYSKGGKMDEA 1052



 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 81/340 (23%), Positives = 144/340 (42%), Gaps = 41/340 (12%)

Query: 105  SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI 164
            +++++ Y + G +  A + F  +P   +++W  MIS      Y +N+   + +   R ++
Sbjct: 933  NSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMIS-----SYAQNNLEMEAICTFRDLL 987

Query: 165  GLGIRPNASSLSSVLLGCS---HLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCG 221
              G++P+  +L+SVL  CS         LG QVH    K  +  D+   T LI +Y K G
Sbjct: 988  RDGLKPDQFTLASVLRACSTGDEGEYFTLGSQVHVYAIKCGIINDSFVSTALIDLYSKGG 1047

Query: 222  DLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFV---- 277
             +++A  L       D+ +WNA++ GY +  K  KAL  F  M + G+  D IT      
Sbjct: 1048 KMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMHEMGIPIDEITLATAIK 1107

Query: 278  -----------------ALLLACNH-----AGLVDLGIQYFD--SMVNDYGIAAKPDH-- 311
                             A+ L  N+     +G++D+ I+  D  + +  +G  ++PD   
Sbjct: 1108 ASGCLINLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNALELFGEISRPDEVA 1167

Query: 312  YTCMVDLLGRAGKLVEAVD---LIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLF 368
            +T M+      G    A+    L++    +P    F TL+ A      L+  +    N+ 
Sbjct: 1168 WTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKASSCLTALEQGKQIHANVV 1227

Query: 369  NLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVV 408
             L+ +        L ++Y       D  R+   M    VV
Sbjct: 1228 KLDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRKVV 1267



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 78/166 (46%)

Query: 107 MISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGL 166
           +I+ Y +CG L  A ++F  +  + +V W ++++ Y +F         +G +L  ++   
Sbjct: 652 LITMYSKCGSLCSARQVFDKSSDRDLVTWNSILAAYAQFADSSYENVLEGFRLFGLLREF 711

Query: 167 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 226
           G      +L+ +L  C     +Q+ + VH    K     D      L+++YCK G +  A
Sbjct: 712 GFSITRLTLAPLLKLCLLSGFVQVSETVHGYAVKIGFELDLFVSGALVNIYCKYGLVGQA 771

Query: 227 CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPD 272
             LF ++  +D V WN M+  Y ++   ++ALR F      G  PD
Sbjct: 772 RLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFFSAFHRSGFFPD 817



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 77/161 (47%), Gaps = 14/161 (8%)

Query: 185 LSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAM 244
           ++ L+LGK+ H  +  S    D      LI+MY KCG L  A ++F +   +D+VTWN++
Sbjct: 624 MADLKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSI 683

Query: 245 ISGYAQHGKGE-----KALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSM 299
           ++ YAQ          +  RLF  +++ G     +T   LL  C  +G V +        
Sbjct: 684 LAAYAQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVS-----ET 738

Query: 300 VNDYG--IAAKPDHYT--CMVDLLGRAGKLVEAVDLIKKMP 336
           V+ Y   I  + D +    +V++  + G + +A  L  KMP
Sbjct: 739 VHGYAVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMP 779



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 67/287 (23%), Positives = 113/287 (39%), Gaps = 44/287 (15%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSD----DVVAAFDFFQRLP---------I 67
           G L  A+++FDK    D+V++N +L+     +D    +V+  F  F  L           
Sbjct: 660 GSLCSARQVFDKSSDRDLVTWNSILAAYAQFADSSYENVLEGFRLFGLLREFGFSITRLT 719

Query: 68  KDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVA 127
                   ++SGFVQ         + +       VS  A+++ Y + G + +A  LF   
Sbjct: 720 LAPLLKLCLLSGFVQVSETVHGYAVKIGFELDLFVS-GALVNIYCKYGLVGQARLLFDKM 778

Query: 128 PVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSS 187
           P +  V W  M+  Y     VENS+ ++ L+        G  P+ S+L  V+ G +   S
Sbjct: 779 PERDAVLWNVMLKAY-----VENSFQDEALRFFSAFHRSGFFPDFSNLHCVIGGVNSDVS 833

Query: 188 LQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISG 247
               +   Q                 +  Y        A K+F   Q  ++  WN  ++ 
Sbjct: 834 NNRKRHAEQ-----------------VKAY--------AMKMFPFDQGSNIFAWNKKLTE 868

Query: 248 YAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ 294
           +   G+   A+  F  +    +  DS+T V +L A   A  +DLG Q
Sbjct: 869 FLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADDLDLGEQ 915


>gi|449486805|ref|XP_004157408.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
            protein At4g33170-like [Cucumis sativus]
          Length = 1573

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 218/517 (42%), Positives = 306/517 (59%), Gaps = 46/517 (8%)

Query: 69   DTASWNTMISGFVQKKNMAKARDLFLAMPEK----------------------------- 99
            D ASWN ++ G+++     KA + F  M E                              
Sbjct: 1063 DLASWNAIMFGYIKSNKSRKALEHFSLMHEMGIPIDEITLATAIKASGCLINLKQGKQIQ 1122

Query: 100  --------NSVSW--SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVE 149
                    N+  W  S ++  YI+CG +  A+ELF        VAWT MISGY     +E
Sbjct: 1123 AYAIKLGFNNDLWVSSGVLDMYIKCGDMPNALELFGEISRPDEVAWTTMISGY-----IE 1177

Query: 150  NSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTA 209
            N   +  L +  +M   G++P+  + ++++   S L++L+ GKQ+H  V K     D   
Sbjct: 1178 NGDEDHALSVYHLMRVSGVQPDEYTFATLIKASSCLTALEQGKQIHANVVKLDYSLDHFV 1237

Query: 210  LTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGM 269
             T L+ MYCKCG ++DA ++F ++  + VV WNAM+ G AQHG  ++AL LF  M+  G+
Sbjct: 1238 GTSLVDMYCKCGSVQDAYRVFRKMDVRKVVFWNAMLLGLAQHGHVDEALNLFRTMQSNGI 1297

Query: 270  KPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAV 329
            +PD +TF+ +L AC+H+GL     +YFD+M   YGI  + +HY+C+VD LGRAG++ EA 
Sbjct: 1298 QPDKVTFIGVLSACSHSGLFSEAYKYFDAMFKTYGITPEIEHYSCLVDALGRAGRIQEAE 1357

Query: 330  DLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAM 389
            ++I  MPFK   +++  LL ACR     + A+  A  L  L+P++++  YV L+NIYAA 
Sbjct: 1358 NVIASMPFKASASMYRALLGACRTKGDAETAKRVADKLLALDPSDSS-AYVLLSNIYAAS 1416

Query: 390  KKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRM 449
            ++WDDV   R  MK  NV K PG+SWI+V   VH F   DR HP+   I+EK+++L KR+
Sbjct: 1417 RQWDDVTDARNMMKLKNVKKDPGFSWIDVKNKVHLFVVDDRSHPQASLIYEKIEDLMKRI 1476

Query: 450  KLAG-YVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDC 508
            +  G YVPD +F L  V EE KE+ L +HSEKLAIAFGLI  P    IRV KNLRVCGDC
Sbjct: 1477 REEGSYVPDTDFTLLDVEEEEKERALYYHSEKLAIAFGLISTPPSATIRVIKNLRVCGDC 1536

Query: 509  HRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
            H A K IS + +REI++RD  RFHHF++GTCSCGDYW
Sbjct: 1537 HSAIKCISKLTQREIVLRDANRFHHFRNGTCSCGDYW 1573



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 90/327 (27%), Positives = 143/327 (43%), Gaps = 59/327 (18%)

Query: 21   GKLKDAQELFDKIPQPDVVSYNIMLSCILLNS--DDVVAAFDFFQRLPIK-DTASWNTMI 77
            G +  A+ LFDK+P+ D V +N+ML   + NS  D+ +  F  F R     D ++ + +I
Sbjct: 766  GLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFFSAFHRSGFXPDFSNLHCVI 825

Query: 78   SGFVQ----------KKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVA 127
             G             ++  A A  +F      N  +W+  ++ ++  GQ+  A++ FK  
Sbjct: 826  GGVNSDVSNNRKRHAEQVKAYAMKMFPFDQGSNIFAWNKKLTEFLHAGQIVAAIDCFKT- 884

Query: 128  PVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSS 187
                                           LLR  IG     ++ +L  +L        
Sbjct: 885  -------------------------------LLRSTIG----HDSVTLVIILSAAVGADD 909

Query: 188  LQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISG 247
            L LG+Q+H LV KS           L++MY K G +  A K F+     D+++WN MIS 
Sbjct: 910  LDLGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISS 969

Query: 248  YAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFD--SMVNDY-- 303
            YAQ+    +A+  F  +  +G+KPD  T  ++L AC+     D G +YF   S V+ Y  
Sbjct: 970  YAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTG---DEG-EYFTLGSQVHVYAI 1025

Query: 304  --GIAAKPDHYTCMVDLLGRAGKLVEA 328
              GI       T ++DL  + GK+ EA
Sbjct: 1026 KCGIINDSFVSTALIDLYSKGGKMDEA 1052



 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 81/340 (23%), Positives = 144/340 (42%), Gaps = 41/340 (12%)

Query: 105  SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI 164
            +++++ Y + G +  A + F  +P   +++W  MIS      Y +N+   + +   R ++
Sbjct: 933  NSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMIS-----SYAQNNLEMEAICTFRDLL 987

Query: 165  GLGIRPNASSLSSVLLGCS---HLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCG 221
              G++P+  +L+SVL  CS         LG QVH    K  +  D+   T LI +Y K G
Sbjct: 988  RDGLKPDQFTLASVLRACSTGDEGEYFTLGSQVHVYAIKCGIINDSFVSTALIDLYSKGG 1047

Query: 222  DLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFV---- 277
             +++A  L       D+ +WNA++ GY +  K  KAL  F  M + G+  D IT      
Sbjct: 1048 KMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMHEMGIPIDEITLATAIK 1107

Query: 278  -----------------ALLLACNH-----AGLVDLGIQYFD--SMVNDYGIAAKPDH-- 311
                             A+ L  N+     +G++D+ I+  D  + +  +G  ++PD   
Sbjct: 1108 ASGCLINLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNALELFGEISRPDEVA 1167

Query: 312  YTCMVDLLGRAGKLVEAVD---LIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLF 368
            +T M+      G    A+    L++    +P    F TL+ A      L+  +    N+ 
Sbjct: 1168 WTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKASSCLTALEQGKQIHANVV 1227

Query: 369  NLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVV 408
             L+ +        L ++Y       D  R+   M    VV
Sbjct: 1228 KLDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRKVV 1267



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 78/166 (46%)

Query: 107 MISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGL 166
           +I+ Y +CG L  A ++F  +  + +V W ++++ Y +F         +G +L  ++   
Sbjct: 652 LITMYSKCGSLCSARQVFDKSSDRDLVTWNSILAAYAQFADSSYENVLEGFRLFGLLREF 711

Query: 167 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 226
           G      +L+ +L  C     +Q+ + VH    K     D      L+++YCK G +  A
Sbjct: 712 GFSITRLTLAPLLKLCLLSGFVQVSETVHGYAVKIGFELDLFVSGALVNIYCKYGLVGQA 771

Query: 227 CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPD 272
             LF ++  +D V WN M+  Y ++   ++ALR F      G  PD
Sbjct: 772 RLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFFSAFHRSGFXPD 817



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 67/287 (23%), Positives = 113/287 (39%), Gaps = 44/287 (15%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSD----DVVAAFDFFQRLP---------I 67
           G L  A+++FDK    D+V++N +L+     +D    +V+  F  F  L           
Sbjct: 660 GSLCSARQVFDKSSDRDLVTWNSILAAYAQFADSSYENVLEGFRLFGLLREFGFSITRLT 719

Query: 68  KDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVA 127
                   ++SGFVQ         + +       VS  A+++ Y + G + +A  LF   
Sbjct: 720 LAPLLKLCLLSGFVQVSETVHGYAVKIGFELDLFVS-GALVNIYCKYGLVGQARLLFDKM 778

Query: 128 PVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSS 187
           P +  V W  M+  Y     VENS+ ++ L+        G  P+ S+L  V+ G +   S
Sbjct: 779 PERDAVLWNVMLKAY-----VENSFQDEALRFFSAFHRSGFXPDFSNLHCVIGGVNSDVS 833

Query: 188 LQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISG 247
               +   Q                 +  Y        A K+F   Q  ++  WN  ++ 
Sbjct: 834 NNRKRHAEQ-----------------VKAY--------AMKMFPFDQGSNIFAWNKKLTE 868

Query: 248 YAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ 294
           +   G+   A+  F  +    +  DS+T V +L A   A  +DLG Q
Sbjct: 869 FLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADDLDLGEQ 915



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 77/161 (47%), Gaps = 14/161 (8%)

Query: 185 LSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAM 244
           ++ L+LGK+ H  +  S    D      LI+MY KCG L  A ++F +   +D+VTWN++
Sbjct: 624 MADLKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSI 683

Query: 245 ISGYAQHGKGE-----KALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSM 299
           ++ YAQ          +  RLF  +++ G     +T   LL  C  +G V +        
Sbjct: 684 LAAYAQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVS-----ET 738

Query: 300 VNDYG--IAAKPDHYT--CMVDLLGRAGKLVEAVDLIKKMP 336
           V+ Y   I  + D +    +V++  + G + +A  L  KMP
Sbjct: 739 VHGYAVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMP 779


>gi|356555301|ref|XP_003545972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 858

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 221/531 (41%), Positives = 327/531 (61%), Gaps = 15/531 (2%)

Query: 23  LKDAQELFDKIPQPDVVSYNIMLSCILLNSD--DVVAAFD--FFQRLPIKDTASWNTMIS 78
           + DA+  +D +P+ D++++N ++S      D  D V+ F   F + +    T + +T++ 
Sbjct: 335 MDDARRAYDSMPKKDIIAWNALISGYSQCGDHLDAVSLFSKMFSEDIDFNQT-TLSTVLK 393

Query: 79  GFVQKKNMAKARDLFLAMPEKNSVS----WSAMISGYIECGQLDKAVELFKVAPVKSVVA 134
                + +   + +     +    S     ++++  Y +C  +D+A ++F+    + +VA
Sbjct: 394 SVASLQAIKVCKQIHTISIKSGIYSDFYVINSLLDTYGKCNHIDEASKIFEERTWEDLVA 453

Query: 135 WTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQV 194
           +T+MI+ Y ++G       E+ LKL   M    I+P+    SS+L  C++LS+ + GKQ+
Sbjct: 454 YTSMITAYSQYGD-----GEEALKLYLQMQDADIKPDPFICSSLLNACANLSAYEQGKQL 508

Query: 195 HQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKG 254
           H    K     D  A   L++MY KCG +EDA + F EI  + +V+W+AMI GYAQHG G
Sbjct: 509 HVHAIKFGFMCDIFASNSLVNMYAKCGSIEDADRAFSEIPNRGIVSWSAMIGGYAQHGHG 568

Query: 255 EKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTC 314
           ++ALRLF++M  +G+ P+ IT V++L ACNHAGLV+ G QYF+ M   +GI    +HY C
Sbjct: 569 KEALRLFNQMLRDGVPPNHITLVSVLCACNHAGLVNEGKQYFEKMEVMFGIKPTQEHYAC 628

Query: 315 MVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPAN 374
           M+DLLGR+GKL EAV+L+  +PF+    ++G LL A R+HK ++L + AA  LF+L P  
Sbjct: 629 MIDLLGRSGKLNEAVELVNSIPFEADGFVWGALLGAARIHKNIELGQKAAKMLFDLEP-E 687

Query: 375 AAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPE 434
            +G +V LANIYA+   W++VA++R  MK++ V K PG SWIE+   V+ F  GDR H  
Sbjct: 688 KSGTHVLLANIYASAGMWENVAKVRKFMKDSKVKKEPGMSWIEIKDKVYTFIVGDRSHSR 747

Query: 435 LVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGT 494
              I+ KL +L   +  AGY   +E  +H V +  KE+LL  HSEKLA+AFGLI  P G 
Sbjct: 748 SDEIYAKLDQLGDLLSKAGYSSIVEIDIHNVDKSEKEKLLYHHSEKLAVAFGLIATPPGG 807

Query: 495 PIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           PIRV KNLR+C DCH   K++  I  REIIVRD  RFHHFKDG+CSCGDYW
Sbjct: 808 PIRVKKNLRICVDCHTFFKFVCKIVSREIIVRDINRFHHFKDGSCSCGDYW 858



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 94/338 (27%), Positives = 170/338 (50%), Gaps = 18/338 (5%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNS--DDVVAAFDFFQRLPI 67
           N ++  ++K R +   A++L D+  + DVVS++ +LS  + N   ++ +  F+    L +
Sbjct: 20  NHLVTLYSKCR-RFGYARKLVDESSELDVVSWSSLLSGYVQNGFVEEALLVFNEMCLLGV 78

Query: 68  K-DTASWNTMISGFVQKKNMAKARDL----FLAMPEKNSVSWSAMISGYIECGQLDKAVE 122
           K +  ++ +++     K+++   R +     +   E +    + ++  Y +CG LD +  
Sbjct: 79  KCNEFTFPSVLKACSMKRDLNMGRKVHGMAVVTGFESDGFVANTLVVMYAKCGLLDDSRR 138

Query: 123 LFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGC 182
           LF     ++VV+W A+ S Y     V++    + + L + M+  GI PN  S+S +L  C
Sbjct: 139 LFGGIVERNVVSWNALFSCY-----VQSELCGEAVGLFKEMVRSGIMPNEFSISIILNAC 193

Query: 183 SHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWN 242
           + L    LG+++H L+ K  L  D  +   L+ MY K G++E A  +F +I   DVV+WN
Sbjct: 194 AGLQEGDLGRKIHGLMLKMGLDLDQFSANALVDMYSKAGEIEGAVAVFQDIAHPDVVSWN 253

Query: 243 AMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVND 302
           A+I+G   H   + AL L D+MK  G +P+  T  + L AC   G  +LG Q   S++  
Sbjct: 254 AIIAGCVLHDCNDLALMLLDEMKGSGTRPNMFTLSSALKACAAMGFKELGRQLHSSLIK- 312

Query: 303 YGIAAKPDHYTC--MVDLLGRAGKLVEAVDLIKKMPFK 338
             + A  D +    +VD+  +   + +A      MP K
Sbjct: 313 --MDAHSDLFAAVGLVDMYSKCEMMDDARRAYDSMPKK 348



 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 110/382 (28%), Positives = 180/382 (47%), Gaps = 46/382 (12%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNS--DDVVAAFDFFQR--- 64
           N+++  +AK  G L D++ LF  I + +VVS+N + SC + +    + V  F    R   
Sbjct: 121 NTLVVMYAKC-GLLDDSRRLFGGIVERNVVSWNALFSCYVQSELCGEAVGLFKEMVRSGI 179

Query: 65  LPIKDTASWNTMISGFVQKKNMA-KARDLFLAMP-EKNSVSWSAMISGYIECGQLDKAVE 122
           +P + + S        +Q+ ++  K   L L M  + +  S +A++  Y + G+++ AV 
Sbjct: 180 MPNEFSISIILNACAGLQEGDLGRKIHGLMLKMGLDLDQFSANALVDMYSKAGEIEGAVA 239

Query: 123 LFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGC 182
           +F+      VV+W A+I+G      V +   +  L LL  M G G RPN  +LSS L  C
Sbjct: 240 VFQDIAHPDVVSWNAIIAGC-----VLHDCNDLALMLLDEMKGSGTRPNMFTLSSALKAC 294

Query: 183 SHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWN 242
           + +   +LG+Q+H  + K     D  A   L+ MY KC  ++DA + +  + +KD++ WN
Sbjct: 295 AAMGFKELGRQLHSSLIKMDAHSDLFAAVGLVDMYSKCEMMDDARRAYDSMPKKDIIAWN 354

Query: 243 AMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA---------CN--HAGLVDL 291
           A+ISGY+Q G    A+ LF KM  E +  +  T   +L +         C   H   +  
Sbjct: 355 ALISGYSQCGDHLDAVSLFSKMFSEDIDFNQTTLSTVLKSVASLQAIKVCKQIHTISIKS 414

Query: 292 GI----QYFDSMVNDYGIAAKPDH---------------YTCMVDLLGRAGKLVEAVDLI 332
           GI       +S+++ YG     D                YT M+    + G   EA+ L 
Sbjct: 415 GIYSDFYVINSLLDTYGKCNHIDEASKIFEERTWEDLVAYTSMITAYSQYGDGEEALKLY 474

Query: 333 KKMP---FKPQPAIFGTLLSAC 351
            +M     KP P I  +LL+AC
Sbjct: 475 LQMQDADIKPDPFICSSLLNAC 496



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 59/100 (59%)

Query: 193 QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHG 252
           ++H  + K    +D +    L+++Y KC     A KL  E    DVV+W++++SGY Q+G
Sbjct: 2   ELHAHLIKFGFSRDPSLRNHLVTLYSKCRRFGYARKLVDESSELDVVSWSSLLSGYVQNG 61

Query: 253 KGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 292
             E+AL +F++M   G+K +  TF ++L AC+    +++G
Sbjct: 62  FVEEALLVFNEMCLLGVKCNEFTFPSVLKACSMKRDLNMG 101


>gi|224138230|ref|XP_002322762.1| predicted protein [Populus trichocarpa]
 gi|222867392|gb|EEF04523.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 217/547 (39%), Positives = 325/547 (59%), Gaps = 20/547 (3%)

Query: 9   WNSVLAGFAKQRGKLKDAQELFDKIPQ-------PDVVSYNIML-SCILLNSDD--VVAA 58
           +NS + GF+      KD  + F    Q       PD ++Y  ++ +C    S D  + A 
Sbjct: 81  YNSFIRGFSGS----KDPDKSFHFYVQSKRNGLVPDNLTYPFLVKACTQKGSLDMGIQAH 136

Query: 59  FDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLD 118
               +     D    N++++ +    ++  A  +F  +   + VSW++M++GYI+ G + 
Sbjct: 137 GQIIRHGFDSDVYVQNSLVTMYSTLGDIKSASYVFRRISCLDVVSWTSMVAGYIKSGDVT 196

Query: 119 KAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSV 178
            A +LF   P K++V W+ MISGY K     NS+ +  ++L  ++   G+  N + + SV
Sbjct: 197 SARKLFDKMPEKNLVTWSVMISGYAK-----NSFFDKAIELYFLLQSEGVHANETVMVSV 251

Query: 179 LLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDV 238
           +  C+HL +L+LG++ H  + ++ +  +    T L+ MY +CG ++ A  +F ++  +D 
Sbjct: 252 IASCAHLGALELGERAHDYILRNKMTVNLILGTALVDMYARCGSIDKAIWVFDQLPGRDA 311

Query: 239 VTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDS 298
           ++W  +I+G+A HG  EKAL  F +M+  G+ P  ITF A+L AC+H GLV+ G++ F+S
Sbjct: 312 LSWTTLIAGFAMHGYAEKALEYFSRMEKAGLTPREITFTAVLSACSHGGLVERGLELFES 371

Query: 299 MVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLD 358
           M  DY I  + +HY CMVDLLGRAGKL EA   + +MP KP   I+G LL ACR+HK  +
Sbjct: 372 MKRDYRIEPRLEHYGCMVDLLGRAGKLAEAEKFVNEMPMKPNAPIWGALLGACRIHKNSE 431

Query: 359 LAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEV 418
           +AE A   L  L P + +G YV L+NIYA   KW++V  IR  MKE  VVK PGY+  E+
Sbjct: 432 IAERAGKTLIELKPEH-SGYYVLLSNIYARTNKWENVENIRQMMKERGVVKPPGYTLFEM 490

Query: 419 GTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHS 478
              VH+F  GD+ HPE+  I    +E+  +++LAGY  + + AL  + EE KE  +  HS
Sbjct: 491 DGKVHKFTIGDKTHPEIQQIERMWEEILGKIRLAGYTGNNDDALFDIDEEEKESNIHRHS 550

Query: 479 EKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGT 538
           EKLAIA+ +++     PIR+ KNLRVC DCH ATK IS + +RE+IVRD  RFHHFK G 
Sbjct: 551 EKLAIAYAIMRTKGHDPIRIVKNLRVCEDCHTATKLISKVYERELIVRDRNRFHHFKGGA 610

Query: 539 CSCGDYW 545
           CSC DYW
Sbjct: 611 CSCMDYW 617



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 68/304 (22%), Positives = 129/304 (42%), Gaps = 46/304 (15%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI 164
           S +IS  I    LD A ++F      ++  + + I G+        S ++D  K     +
Sbjct: 51  SCLISISINKNLLDYAAQVFYQIQNPNLFIYNSFIRGF--------SGSKDPDKSFHFYV 102

Query: 165 GL---GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCG 221
                G+ P+  +   ++  C+   SL +G Q H  + +     D      L++MY   G
Sbjct: 103 QSKRNGLVPDNLTYPFLVKACTQKGSLDMGIQAHGQIIRHGFDSDVYVQNSLVTMYSTLG 162

Query: 222 DLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKM----------------- 264
           D++ A  +F  I   DVV+W +M++GY + G    A +LFDKM                 
Sbjct: 163 DIKSASYVFRRISCLDVVSWTSMVAGYIKSGDVTSARKLFDKMPEKNLVTWSVMISGYAK 222

Query: 265 --------------KDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPD 310
                         + EG+  +    V+++ +C H G ++LG +  D ++ +  +     
Sbjct: 223 NSFFDKAIELYFLLQSEGVHANETVMVSVIASCAHLGALELGERAHDYILRN-KMTVNLI 281

Query: 311 HYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLD--LAEFAAMNLF 368
             T +VD+  R G + +A+ +  ++P +   + + TL++   +H   +  L  F+ M   
Sbjct: 282 LGTALVDMYARCGSIDKAIWVFDQLPGRDALS-WTTLIAGFAMHGYAEKALEYFSRMEKA 340

Query: 369 NLNP 372
            L P
Sbjct: 341 GLTP 344



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 64/118 (54%), Gaps = 3/118 (2%)

Query: 177 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK 236
           S L  C+ LS L++   +H  + ++    D  A + LIS+      L+ A ++F +IQ  
Sbjct: 20  SFLESCTTLSHLKI---IHAHLIRAHTIFDVFAASCLISISINKNLLDYAAQVFYQIQNP 76

Query: 237 DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ 294
           ++  +N+ I G++     +K+   + + K  G+ PD++T+  L+ AC   G +D+GIQ
Sbjct: 77  NLFIYNSFIRGFSGSKDPDKSFHFYVQSKRNGLVPDNLTYPFLVKACTQKGSLDMGIQ 134



 Score = 43.1 bits (100), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 82/174 (47%), Gaps = 17/174 (9%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELF-----DKIPQPDVVSYNIMLSCILLNSDDV 55
           M  K  V W+ +++G+AK       A EL+     + +   + V  +++ SC  L + ++
Sbjct: 205 MPEKNLVTWSVMISGYAKN-SFFDKAIELYFLLQSEGVHANETVMVSVIASCAHLGALEL 263

Query: 56  -VAAFDFFQRLPIKDTASWNT-MISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE 113
              A D+  R  +       T ++  + +  ++ KA  +F  +P ++++SW+ +I+G+  
Sbjct: 264 GERAHDYILRNKMTVNLILGTALVDMYARCGSIDKAIWVFDQLPGRDALSWTTLIAGFAM 323

Query: 114 CGQLDKAVELF----KVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMM 163
            G  +KA+E F    K       + +TA++S     G VE      GL+L   M
Sbjct: 324 HGYAEKALEYFSRMEKAGLTPREITFTAVLSACSHGGLVER-----GLELFESM 372


>gi|449487256|ref|XP_004157540.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Cucumis sativus]
          Length = 782

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 224/554 (40%), Positives = 333/554 (60%), Gaps = 20/554 (3%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDK-IPQPDVVSYNIMLSCIL--------LNSDD 54
           +  V+WNS+++G+++Q   L +A  +F K + +P +   N  L+ IL        LN   
Sbjct: 237 RDIVSWNSMISGYSQQGYNL-EALAIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGK 295

Query: 55  VVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFL--AMPEKNSVSWSAMISGYI 112
            + A+   +       A  N +IS + +   +  AR +         N +++++++ GY 
Sbjct: 296 QIHAY-ILRAETETSGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYT 354

Query: 113 ECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNA 172
           + G +  A E+F     + VVAWTAMI      GYV+N    D L+L R+M+  G  PN+
Sbjct: 355 KLGNVKPAREIFNKLRDRDVVAWTAMI-----VGYVQNGLWNDALELFRLMVNEGPEPNS 409

Query: 173 SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF-L 231
            +L+++L   S L+ L+ GKQ+H    K+      +    LI+MY K G++  A ++F L
Sbjct: 410 YTLAAMLSVSSSLTILEHGKQIHASAIKAGESSTPSVTNALIAMYAKTGNINVAKRVFDL 469

Query: 232 EIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDL 291
              +K++V+W +MI   AQHG G++A+ LF++M   GMKPD IT+V +L AC H GLV+ 
Sbjct: 470 PNGKKEIVSWTSMIMALAQHGLGKEAINLFERMLSVGMKPDHITYVGVLSACTHVGLVEQ 529

Query: 292 GIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSAC 351
           G +Y++ M   + I     HY CM+DL GRAG L EA   I+ MP +P    +G+LL++C
Sbjct: 530 GRKYYNMMTEVHEIEPTLSHYACMIDLYGRAGLLQEAYLFIESMPIEPDNIAWGSLLASC 589

Query: 352 RVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMP 411
           ++HK  DLA+ AA  L  ++P N+ G Y+ LAN+Y+A  KW++ A+ R  MK+  V K  
Sbjct: 590 KIHKNADLAKVAAERLLLIDPGNS-GAYLALANVYSACGKWENAAQTRKLMKDRGVRKEK 648

Query: 412 GYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKE 471
           G SWI +   VH F   D +HP+   I++ + E+ + +K  G++PD E  LH + EEVKE
Sbjct: 649 GISWIHIKNEVHAFGVEDVIHPQKDEIYKLMAEIWEEIKKMGFIPDTESVLHDLEEEVKE 708

Query: 472 QLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRF 531
           Q+L +HSEKLAIAFGL+  P  T +R+ KNLRVC DCH A K+IS +  REIIVRD TRF
Sbjct: 709 QILKYHSEKLAIAFGLLNTPENTALRIMKNLRVCNDCHSAIKFISKLVGREIIVRDATRF 768

Query: 532 HHFKDGTCSCGDYW 545
           HHFKDG+CSC DYW
Sbjct: 769 HHFKDGSCSCRDYW 782



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 77/241 (31%), Positives = 127/241 (52%), Gaps = 12/241 (4%)

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQL 117
           A   F  +P+K T SWNT+ISG+ ++ N   +R L   MP+ + VSW+A+I GY + G  
Sbjct: 64  AHHVFDEMPLKSTFSWNTLISGYAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLF 123

Query: 118 DKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIR---PNASS 174
           D A+ +F     + V      +S  +      N   + G K+   ++ LG+    P A+S
Sbjct: 124 DNAIWMFAKMISERVPPSQFTVSNVLS-SCAANQTLDIGRKIHSFVVKLGLGSCVPVATS 182

Query: 175 LSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ 234
           L ++   C           + ++VF     K+ +    LIS+Y + G  E A   F ++ 
Sbjct: 183 LLNMYAKCG-------DPVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMP 235

Query: 235 RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE-GMKPDSITFVALLLACNHAGLVDLGI 293
            +D+V+WN+MISGY+Q G   +AL +F KM +E  +KPD+ T  ++L AC +   +++G 
Sbjct: 236 DRDIVSWNSMISGYSQQGYNLEALAIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGK 295

Query: 294 Q 294
           Q
Sbjct: 296 Q 296



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 91/390 (23%), Positives = 159/390 (40%), Gaps = 108/390 (27%)

Query: 7   VNWNSVLAGFAKQRGKLKDAQELF-----DKIPQPDVVSYNIMLSCI------------- 48
           V+W +++ G+  Q G   +A  +F     +++P       N++ SC              
Sbjct: 108 VSWTAIIVGY-NQFGLFDNAIWMFAKMISERVPPSQFTVSNVLSSCAANQTLDIGRKIHS 166

Query: 49  ----------------LLN----SDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAK 88
                           LLN      D V A   F R+ +K+ ++WN +IS ++Q      
Sbjct: 167 FVVKLGLGSCVPVATSLLNMYAKCGDPVIAKVVFDRMTVKNISTWNALISLYMQSGQFEL 226

Query: 89  ARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYV 148
           A   F  MP+++ VSW++MISGY + G   +A+ +F                        
Sbjct: 227 AASQFEKMPDRDIVSWNSMISGYSQQGYNLEALAIFS----------------------- 263

Query: 149 ENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTT 208
                       +M+    ++P+  +L+S+L  C++L  L +GKQ+H  + ++       
Sbjct: 264 ------------KMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETETSGA 311

Query: 209 ALTPLISMYCKCGDLE---------------------------------DACKLFLEIQR 235
               LISMY K G +E                                  A ++F +++ 
Sbjct: 312 VGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLRD 371

Query: 236 KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQY 295
           +DVV W AMI GY Q+G    AL LF  M +EG +P+S T  A+L   +   +++ G Q 
Sbjct: 372 RDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHGKQI 431

Query: 296 FDSMVNDYGIAAKPDHYTCMVDLLGRAGKL 325
             S +   G ++ P     ++ +  + G +
Sbjct: 432 HASAIKA-GESSTPSVTNALIAMYAKTGNI 460



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 57/112 (50%), Gaps = 4/112 (3%)

Query: 191 GKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQ 250
           G+ VH  + K  L      +  L++ Y K G L  A  +F E+  K   +WN +ISGYA+
Sbjct: 29  GRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVFDEMPLKSTFSWNTLISGYAK 88

Query: 251 HGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVND 302
            G  E + RL  +M D     D +++ A+++  N  GL D  I  F  M+++
Sbjct: 89  QGNFEVSRRLLYEMPD----CDPVSWTAIIVGYNQFGLFDNAIWMFAKMISE 136


>gi|449436619|ref|XP_004136090.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Cucumis sativus]
          Length = 723

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 219/546 (40%), Positives = 315/546 (57%), Gaps = 14/546 (2%)

Query: 7   VNWNSVLAGFAKQRGKLKDAQELF----DKIPQPDVVSYNIMLSCILLNSDDVVA--AFD 60
           + WN +++ + K  GK ++++ LF    DK   P  V+  ++LS      D         
Sbjct: 185 ITWNMIISAYNKV-GKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHS 243

Query: 61  FFQRLPIKDTASW-NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDK 119
           + +   ++      N MI  +     M  A  +F +M  ++ +SW+ ++SG+   G++D 
Sbjct: 244 YVKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDV 303

Query: 120 AVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVL 179
           A   F   P K  V+WTAMI GY++     N + E  L+L R M    ++P+  ++ SVL
Sbjct: 304 ARNYFDKMPEKDYVSWTAMIDGYIR----SNRFKE-ALELFRNMQATNVKPDEFTMVSVL 358

Query: 180 LGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVV 239
             C+HL +L+LG+ +   + ++ +  D      LI MY KCGD++ A  +F E+ ++D  
Sbjct: 359 TACAHLGALELGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKF 418

Query: 240 TWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSM 299
           TW AMI G A +G GEKAL +F  M    + PD IT++ +L AC H GLVD G +YF  M
Sbjct: 419 TWTAMIVGLAVNGHGEKALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRM 478

Query: 300 VNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDL 359
            + +GI     HY C+VDLL RAG+L EA ++I+ MP K    ++G LL+ CRV++  D+
Sbjct: 479 TSQHGIEPNIAHYGCLVDLLARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVYRESDM 538

Query: 360 AEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVG 419
           AE     +  L P N A  YV L NIYAA K+W+D+  +R  M +  + K PG S IE+ 
Sbjct: 539 AEMVVKQILELEPDNGA-VYVLLCNIYAACKRWNDLRELRQMMMDKGIKKTPGCSLIEMN 597

Query: 420 TVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSE 479
             VHEF +GDR HP+  +I  KL ++ + +KLAGY PD+      + EE KE  +  HSE
Sbjct: 598 GRVHEFVAGDRSHPQTKNIDAKLDKMTQDLKLAGYSPDISEVFLDIAEEDKENSVFRHSE 657

Query: 480 KLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTC 539
           KLAIAFGLI  P G  IR+ KNLR+C DCH   K +S +  RE+IVRD TRFHHFK G C
Sbjct: 658 KLAIAFGLINSPPGVTIRITKNLRMCMDCHNMAKLVSKVYNREVIVRDRTRFHHFKHGLC 717

Query: 540 SCGDYW 545
           SC DYW
Sbjct: 718 SCKDYW 723



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 96/377 (25%), Positives = 165/377 (43%), Gaps = 50/377 (13%)

Query: 3   VKTTVNWNSVLAG------FAKQRGKLKDAQELFDKIPQPDVVSYNIML---SCILLNSD 53
           +K  +N N VL           + G  + A+ LFD+IP+P++  +N M+   S +     
Sbjct: 42  IKKGLNANPVLQNRVMTFCCTHEYGDFQYARRLFDEIPEPNLFIWNTMIRGYSRLDFPQL 101

Query: 54  DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMIS 109
            V    +  +R    D  ++  +  GF +   +   R L   +     + N    +A++ 
Sbjct: 102 GVSLYLEMLRRGVKPDRYTFPFLFKGFTRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQ 161

Query: 110 GYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIR 169
            Y+ CGQLD A  +F V P   V+ W  +IS Y K G  E S      +L  +M    + 
Sbjct: 162 MYLLCGQLDTARGVFDVCPKADVITWNMIISAYNKVGKFEES-----RRLFLVMEDKQVL 216

Query: 170 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 229
           P   +L  VL  CS L  L+ GK+VH  V    +  +      +I MY  CG+++ A  +
Sbjct: 217 PTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVESNLVLENAMIDMYADCGEMDSALGI 276

Query: 230 FLEIQRKDV-------------------------------VTWNAMISGYAQHGKGEKAL 258
           F  +  +D+                               V+W AMI GY +  + ++AL
Sbjct: 277 FRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEAL 336

Query: 259 RLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDL 318
            LF  M+   +KPD  T V++L AC H G ++LG ++  + ++   I         ++D+
Sbjct: 337 ELFRNMQATNVKPDEFTMVSVLTACAHLGALELG-EWIRTYIDRNKIKNDLFVRNALIDM 395

Query: 319 LGRAGKLVEAVDLIKKM 335
             + G + +A  + ++M
Sbjct: 396 YFKCGDVDKAESIFREM 412



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 74/295 (25%), Positives = 137/295 (46%), Gaps = 11/295 (3%)

Query: 113 ECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNA 172
           E G    A  LF   P  ++  W  MI GY +  +      + G+ L   M+  G++P+ 
Sbjct: 64  EYGDFQYARRLFDEIPEPNLFIWNTMIRGYSRLDF-----PQLGVSLYLEMLRRGVKPDR 118

Query: 173 SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLE 232
            +   +  G +   +L+ G+Q+H  V K  L  +    T L+ MY  CG L+ A  +F  
Sbjct: 119 YTFPFLFKGFTRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDV 178

Query: 233 IQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 292
             + DV+TWN +IS Y + GK E++ RLF  M+D+ + P ++T V +L AC+    +  G
Sbjct: 179 CPKADVITWNMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTG 238

Query: 293 IQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACR 352
            +   S V +  + +       M+D+    G++  A+ + + M  +   + + T++S   
Sbjct: 239 -KKVHSYVKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIIS-WTTIVSGFT 296

Query: 353 VHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNV 407
               +D+A     N F+  P      +  + + Y    ++ +   +  +M+  NV
Sbjct: 297 NLGEIDVAR----NYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNV 347



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 70/336 (20%), Positives = 148/336 (44%), Gaps = 21/336 (6%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           MN +  ++W ++++GF    G++  A+  FDK+P+ D VS+  M+    + S+    A +
Sbjct: 280 MNNRDIISWTTIVSGFT-NLGEIDVARNYFDKMPEKDYVSWTAMIDG-YIRSNRFKEALE 337

Query: 61  FFQRLPIKDTASWN-TMISGFVQKKNMAKAR--DLFLAMPEKNSVS-----WSAMISGYI 112
            F+ +   +      TM+S      ++      +      ++N +       +A+I  Y 
Sbjct: 338 LFRNMQATNVKPDEFTMVSVLTACAHLGALELGEWIRTYIDRNKIKNDLFVRNALIDMYF 397

Query: 113 ECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNA 172
           +CG +DKA  +F+    +    WTAMI      G   N   E  L +   M+   I P+ 
Sbjct: 398 KCGDVDKAESIFREMSQRDKFTWTAMI-----VGLAVNGHGEKALDMFSNMLKASILPDE 452

Query: 173 SSLSSVLLGCSHLSSLQLGKQVH-QLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFL 231
            +   VL  C+H   +  G++   ++  +  +  +      L+ +  + G L++A ++  
Sbjct: 453 ITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNIAHYGCLVDLLARAGRLKEAYEVIE 512

Query: 232 EIQRK-DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVD 290
            +  K + + W A+++G   + + + A  +  ++ +  ++PD+     LL     A    
Sbjct: 513 NMPIKANSIVWGALLAGCRVYRESDMAEMVVKQILE--LEPDNGAVYVLLCNIYAACKRW 570

Query: 291 LGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLV 326
             ++    M+ D GI   P     ++++ GR  + V
Sbjct: 571 NDLRELRQMMMDKGIKKTPG--CSLIEMNGRVHEFV 604


>gi|302760085|ref|XP_002963465.1| hypothetical protein SELMODRAFT_79732 [Selaginella moellendorffii]
 gi|300168733|gb|EFJ35336.1| hypothetical protein SELMODRAFT_79732 [Selaginella moellendorffii]
          Length = 829

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 225/547 (41%), Positives = 336/547 (61%), Gaps = 14/547 (2%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQP--DVVSYNIMLSCILLNSDDVVAAFDFFQRLPI 67
           N+V+  + +  G +++A+++FD + +   DVVS+NIMLS  + N D    A   +QR+ +
Sbjct: 286 NAVMTMYGRC-GAVEEARKVFDAMDEALRDVVSWNIMLSAYVHN-DRGKDAIQLYQRMQL 343

Query: 68  K-DTASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMISGYIECGQLDKAVE 122
           + D  ++ +++S     +++   R L   +     EKN +  +A++S Y +CG   +A  
Sbjct: 344 RADKVTYVSLLSACSSAEDVGLGRVLHKQIVNDELEKNVIVGNALVSMYAKCGSHTEARA 403

Query: 123 LFKVAPVKSVVAWTAMISGYMKFGYVENSWA--EDGLKLLRMMIGLGIRPNASSLSSVLL 180
           +F     +S+++WT +IS Y++   V  +    +  L+L +      ++P+A +  ++L 
Sbjct: 404 VFDKMEQRSIISWTTIISAYVRRRLVAEACHLFQQMLELEKNGSSQRVKPDALAFVTILN 463

Query: 181 GCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI-QRKDVV 239
            C+ +S+L+ GK V +      L  D    T ++++Y KCG++E+  ++F  +  R DV 
Sbjct: 464 ACADVSALEQGKMVSEQAASCGLSSDKAVGTAVVNLYGKCGEIEEGRRIFDGVCSRPDVQ 523

Query: 240 TWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSM 299
            WNAMI+ YAQ G+  +AL+LF +M+ EG++PDS +FV++LLAC+H GL D G  YF SM
Sbjct: 524 LWNAMIAVYAQFGQSHEALKLFWRMEMEGVRPDSFSFVSILLACSHTGLEDQGKSYFTSM 583

Query: 300 VNDY-GIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLD 358
             +Y  +     H+ C+ DLLGR G+L EA + ++K+P KP    + +LL+ACR H+ L 
Sbjct: 584 TTEYRNVTRTIQHFGCVADLLGRGGRLKEAEEFLEKLPVKPDAVAWTSLLAACRNHRDLK 643

Query: 359 LAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEV 418
            A+  A  L  L P  A G YV L+NIYA ++KW  VA++R  M E  V K  G S IE+
Sbjct: 644 RAKEVANKLLRLEPRCATG-YVALSNIYAELQKWHAVAKVRKFMAEQGVKKERGVSTIEI 702

Query: 419 GTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHS 478
           G  +H+F +GD  HP    I E+L +L  +MK  GYVPD +  LH V E+ KE+LL  HS
Sbjct: 703 GKYMHDFATGDDAHPRNREIREELAKLHSQMKECGYVPDTKMVLHFVDEQEKERLLFSHS 762

Query: 479 EKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGT 538
           E+LAIA GLI  PLGTP+RV KNLRVC DCH ATK IS I  R+I+VRD TRFH FKDG 
Sbjct: 763 ERLAIALGLISTPLGTPLRVTKNLRVCSDCHTATKLISKIAGRKIVVRDPTRFHLFKDGK 822

Query: 539 CSCGDYW 545
           CSC DYW
Sbjct: 823 CSCQDYW 829



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 76/312 (24%), Positives = 144/312 (46%), Gaps = 12/312 (3%)

Query: 49  LLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLF-LAMPEK----NSVS 103
           L  SD   A  D  ++    + A++  ++    + + + + R +  LA+       N + 
Sbjct: 22  LDRSDIASAVLDLEKQAVRAENATYARLLQRCARAQALPEGRKIHSLAVKHNLLPGNLIL 81

Query: 104 WSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMM 163
            + ++S Y  C     A   F     +++ +WT +++ +   G      +++ L+ L  M
Sbjct: 82  GNHIVSMYAHCDSPGDAKAAFDALEQRNLYSWTGLVAAFAISGQ-----SKETLRALERM 136

Query: 164 IGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDL 223
              G+RP+A +  + L  C    SL+ G ++HQ+V  S L  D      L++MY KCG L
Sbjct: 137 RQDGVRPDAVTFITALGSCGDPESLRDGIRIHQMVVDSRLEIDPKVSNALLNMYKKCGSL 196

Query: 224 EDACKLFLEIQR-KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA 282
             A ++F +++R ++V++W+ M   +A HG   +ALR F  M   G+K      V +L A
Sbjct: 197 SHAKRVFAKMERTRNVISWSIMAGAHALHGNVWEALRHFRFMLLLGIKATKSAMVTILSA 256

Query: 283 CNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPA 342
           C+   LV  G +   S +   G  ++      ++ + GR G + EA  +   M    +  
Sbjct: 257 CSSPALVQDG-RLIHSCIALSGFESELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDV 315

Query: 343 IFGTLLSACRVH 354
           +   ++ +  VH
Sbjct: 316 VSWNIMLSAYVH 327


>gi|449449306|ref|XP_004142406.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Cucumis sativus]
          Length = 782

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 228/587 (38%), Positives = 338/587 (57%), Gaps = 49/587 (8%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCI------------ 48
           M VK    WN++++ +  Q G+ + A   F+K+P  D+VS+N M+S              
Sbjct: 203 MTVKNISTWNALISLYM-QSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGYNLEALVI 261

Query: 49  ---LLNSDD----------VVAAFDFFQRLPI--------------KDTASWNTMISGFV 81
              +LN             +++A    ++L I                 A  N +IS + 
Sbjct: 262 FSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETETSGAVGNALISMYA 321

Query: 82  QKKNMAKARDLFL--AMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMI 139
           +   +  AR +         N +++++++ GY + G +  A E+F     + VVAWTAMI
Sbjct: 322 KSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVVAWTAMI 381

Query: 140 SGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVF 199
                 GYV+N    D L+L R+M+  G  PN+ +L+++L   S L+ L+ GKQ+H    
Sbjct: 382 -----VGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHGKQIHASAI 436

Query: 200 KSPLCKDTTALTPLISMYCKCGDLEDACKLF-LEIQRKDVVTWNAMISGYAQHGKGEKAL 258
           K+      +    LI+MY K G++  A ++F L   +K++V+W +MI   AQHG G++A+
Sbjct: 437 KAGESSTPSVTNALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTSMIMALAQHGLGKEAI 496

Query: 259 RLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDL 318
            LF++M   GMKPD IT+V +L AC H GLV+ G +Y++ M   + I     HY CM+DL
Sbjct: 497 NLFERMLSVGMKPDHITYVGVLSACTHVGLVEQGRKYYNMMTEVHEIEPTLSHYACMIDL 556

Query: 319 LGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGC 378
            GRAG L EA   I+ MP +P    +G+LL++C++HK  DLA+ AA  L  ++P N+ G 
Sbjct: 557 YGRAGLLQEAYLFIESMPIEPDNIAWGSLLASCKIHKNADLAKVAAERLLLIDPGNS-GA 615

Query: 379 YVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSI 438
           Y+ LAN+Y+A  KW++ A+ R  MK+  V K  G SWI +   VH F   D +HP+   I
Sbjct: 616 YLALANVYSACGKWENAAQTRKLMKDRGVRKEKGISWIHIKNEVHAFGVEDVIHPQKDEI 675

Query: 439 HEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRV 498
           ++ + E+ + +K  G++PD E  LH + EEVKEQ+L +HSEKLAIAFGL+  P  T +R+
Sbjct: 676 YKLMAEIWEEIKKMGFIPDTESVLHDLEEEVKEQILKYHSEKLAIAFGLLNTPENTALRI 735

Query: 499 FKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
            KNLRVC DCH A K+IS +  REIIVRD TRFHHFKDG+CSC DYW
Sbjct: 736 MKNLRVCNDCHSAIKFISKLVGREIIVRDATRFHHFKDGSCSCRDYW 782



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 77/241 (31%), Positives = 127/241 (52%), Gaps = 12/241 (4%)

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQL 117
           A   F  +P+K T SWNT+ISG+ ++ N   +R L   MP+ + VSW+A+I GY + G  
Sbjct: 64  AHHVFDEMPLKSTFSWNTLISGYAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLF 123

Query: 118 DKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIR---PNASS 174
           D A+ +F     + V      +S  +      N   + G K+   ++ LG+    P A+S
Sbjct: 124 DNAIWMFAKMISERVPPSQFTVSNVLS-SCAANQTLDIGRKIHSFVVKLGLGSCVPVATS 182

Query: 175 LSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ 234
           L ++   C           + ++VF     K+ +    LIS+Y + G  E A   F ++ 
Sbjct: 183 LLNMYAKCG-------DPVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMP 235

Query: 235 RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE-GMKPDSITFVALLLACNHAGLVDLGI 293
            +D+V+WN+MISGY+Q G   +AL +F KM +E  +KPD+ T  ++L AC +   +++G 
Sbjct: 236 DRDIVSWNSMISGYSQQGYNLEALVIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGK 295

Query: 294 Q 294
           Q
Sbjct: 296 Q 296



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 91/390 (23%), Positives = 159/390 (40%), Gaps = 108/390 (27%)

Query: 7   VNWNSVLAGFAKQRGKLKDAQELF-----DKIPQPDVVSYNIMLSCI------------- 48
           V+W +++ G+  Q G   +A  +F     +++P       N++ SC              
Sbjct: 108 VSWTAIIVGY-NQFGLFDNAIWMFAKMISERVPPSQFTVSNVLSSCAANQTLDIGRKIHS 166

Query: 49  ----------------LLN----SDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAK 88
                           LLN      D V A   F R+ +K+ ++WN +IS ++Q      
Sbjct: 167 FVVKLGLGSCVPVATSLLNMYAKCGDPVIAKVVFDRMTVKNISTWNALISLYMQSGQFEL 226

Query: 89  ARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYV 148
           A   F  MP+++ VSW++MISGY + G   +A+ +F                        
Sbjct: 227 AASQFEKMPDRDIVSWNSMISGYSQQGYNLEALVIFS----------------------- 263

Query: 149 ENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTT 208
                       +M+    ++P+  +L+S+L  C++L  L +GKQ+H  + ++       
Sbjct: 264 ------------KMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETETSGA 311

Query: 209 ALTPLISMYCKCGDLE---------------------------------DACKLFLEIQR 235
               LISMY K G +E                                  A ++F +++ 
Sbjct: 312 VGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLRD 371

Query: 236 KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQY 295
           +DVV W AMI GY Q+G    AL LF  M +EG +P+S T  A+L   +   +++ G Q 
Sbjct: 372 RDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHGKQI 431

Query: 296 FDSMVNDYGIAAKPDHYTCMVDLLGRAGKL 325
             S +   G ++ P     ++ +  + G +
Sbjct: 432 HASAIKA-GESSTPSVTNALIAMYAKTGNI 460



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 57/112 (50%), Gaps = 4/112 (3%)

Query: 191 GKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQ 250
           G+ VH  + K  L      +  L++ Y K G L  A  +F E+  K   +WN +ISGYA+
Sbjct: 29  GRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVFDEMPLKSTFSWNTLISGYAK 88

Query: 251 HGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVND 302
            G  E + RL  +M D     D +++ A+++  N  GL D  I  F  M+++
Sbjct: 89  QGNFEVSRRLLYEMPD----CDPVSWTAIIVGYNQFGLFDNAIWMFAKMISE 136


>gi|449491161|ref|XP_004158817.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g15930-like [Cucumis
           sativus]
          Length = 744

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 219/546 (40%), Positives = 316/546 (57%), Gaps = 14/546 (2%)

Query: 7   VNWNSVLAGFAKQRGKLKDAQELF----DKIPQPDVVSYNIMLSCI--LLNSDDVVAAFD 60
           + WN +++ + K  GK ++++ LF    DK   P  V+  ++LS    L +         
Sbjct: 206 ITWNMIISAYNKV-GKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHS 264

Query: 61  FFQRLPIKDTASW-NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDK 119
           + +   ++      N MI  +     M  A  +F +M  ++ +SW+ ++SG+   G++D 
Sbjct: 265 YVKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDV 324

Query: 120 AVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVL 179
           A   F   P K  V+WTAMI GY++     N + E  L+L R M    ++P+  ++ SVL
Sbjct: 325 ARNYFDKMPEKDYVSWTAMIDGYIR----SNRFKE-ALELFRNMQATNVKPDEFTMVSVL 379

Query: 180 LGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVV 239
             C+HL +L+LG+ +   + ++ +  D      LI MY KCGD++ A  +F E+ ++D  
Sbjct: 380 TACAHLGALELGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKF 439

Query: 240 TWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSM 299
           TW AMI G A +G GEKAL +F  M    + PD IT++ +L AC H GLVD G +YF  M
Sbjct: 440 TWTAMIVGLAVNGHGEKALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRM 499

Query: 300 VNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDL 359
            + +GI     HY C+VDLL RAG+L EA ++I+ MP K    ++G LL+ CRV++  D+
Sbjct: 500 TSQHGIEPNIAHYGCLVDLLARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVYRESDM 559

Query: 360 AEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVG 419
           AE     +  L P N A  YV L NIYAA K+W+D+  +R  M +  + K PG S IE+ 
Sbjct: 560 AEMVVKQILELEPDNGA-VYVLLCNIYAACKRWNDLRELRQMMMDKGIKKXPGCSLIEMN 618

Query: 420 TVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSE 479
             VHEF +GDR HP+  +I  KL ++ + +KLAGY PD+      + EE KE  +  HSE
Sbjct: 619 GRVHEFVAGDRSHPQTKNIDAKLDKMTQDLKLAGYSPDISEVFLDIAEEDKENSVFRHSE 678

Query: 480 KLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTC 539
           KLAIAFGLI  P G  IR+ KNLR+C DCH   K +S +  RE+IVRD TRFHHFK G C
Sbjct: 679 KLAIAFGLINSPPGVTIRITKNLRMCMDCHNMAKLVSKVYNREVIVRDRTRFHHFKHGLC 738

Query: 540 SCGDYW 545
           SC DYW
Sbjct: 739 SCKDYW 744



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 96/377 (25%), Positives = 165/377 (43%), Gaps = 50/377 (13%)

Query: 3   VKTTVNWNSVLAG------FAKQRGKLKDAQELFDKIPQPDVVSYNIML---SCILLNSD 53
           +K  +N N VL           + G  + A+ LFD+IP+P++  +N M+   S +     
Sbjct: 63  IKKGLNANPVLQNRVMTFCCTHEYGDFQYARRLFDEIPEPNLFIWNTMIRGYSRLDFPQL 122

Query: 54  DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMIS 109
            V    +  +R    D  ++  +  GF +   +   R L   +     + N    +A++ 
Sbjct: 123 GVSLYLEMLRRGVKPDRYTFPFLFKGFTRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQ 182

Query: 110 GYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIR 169
            Y+ CGQLD A  +F V P   V+ W  +IS Y K G  E S      +L  +M    + 
Sbjct: 183 MYLLCGQLDTARGVFDVCPKADVITWNMIISAYNKVGKFEES-----RRLFLVMEDKQVL 237

Query: 170 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 229
           P   +L  VL  CS L  L+ GK+VH  V    +  +      +I MY  CG+++ A  +
Sbjct: 238 PTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVESNLVLENAMIDMYADCGEMDSALGI 297

Query: 230 FLEIQRKDV-------------------------------VTWNAMISGYAQHGKGEKAL 258
           F  +  +D+                               V+W AMI GY +  + ++AL
Sbjct: 298 FRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEAL 357

Query: 259 RLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDL 318
            LF  M+   +KPD  T V++L AC H G ++LG ++  + ++   I         ++D+
Sbjct: 358 ELFRNMQATNVKPDEFTMVSVLTACAHLGALELG-EWIRTYIDRNKIKNDLFVRNALIDM 416

Query: 319 LGRAGKLVEAVDLIKKM 335
             + G + +A  + ++M
Sbjct: 417 YFKCGDVDKAESIFREM 433



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 74/295 (25%), Positives = 137/295 (46%), Gaps = 11/295 (3%)

Query: 113 ECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNA 172
           E G    A  LF   P  ++  W  MI GY +  +      + G+ L   M+  G++P+ 
Sbjct: 85  EYGDFQYARRLFDEIPEPNLFIWNTMIRGYSRLDF-----PQLGVSLYLEMLRRGVKPDR 139

Query: 173 SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLE 232
            +   +  G +   +L+ G+Q+H  V K  L  +    T L+ MY  CG L+ A  +F  
Sbjct: 140 YTFPFLFKGFTRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDV 199

Query: 233 IQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 292
             + DV+TWN +IS Y + GK E++ RLF  M+D+ + P ++T V +L AC+    +  G
Sbjct: 200 CPKADVITWNMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTG 259

Query: 293 IQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACR 352
            +   S V +  + +       M+D+    G++  A+ + + M  +   + + T++S   
Sbjct: 260 -KKVHSYVKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIIS-WTTIVSGFT 317

Query: 353 VHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNV 407
               +D+A     N F+  P      +  + + Y    ++ +   +  +M+  NV
Sbjct: 318 NLGEIDVAR----NYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNV 368



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 70/336 (20%), Positives = 148/336 (44%), Gaps = 21/336 (6%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           MN +  ++W ++++GF    G++  A+  FDK+P+ D VS+  M+    + S+    A +
Sbjct: 301 MNNRDIISWTTIVSGFT-NLGEIDVARNYFDKMPEKDYVSWTAMIDG-YIRSNRFKEALE 358

Query: 61  FFQRLPIKDTASWN-TMISGFVQKKNMAKAR--DLFLAMPEKNSVS-----WSAMISGYI 112
            F+ +   +      TM+S      ++      +      ++N +       +A+I  Y 
Sbjct: 359 LFRNMQATNVKPDEFTMVSVLTACAHLGALELGEWIRTYIDRNKIKNDLFVRNALIDMYF 418

Query: 113 ECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNA 172
           +CG +DKA  +F+    +    WTAMI      G   N   E  L +   M+   I P+ 
Sbjct: 419 KCGDVDKAESIFREMSQRDKFTWTAMI-----VGLAVNGHGEKALDMFSNMLKASILPDE 473

Query: 173 SSLSSVLLGCSHLSSLQLGKQVH-QLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFL 231
            +   VL  C+H   +  G++   ++  +  +  +      L+ +  + G L++A ++  
Sbjct: 474 ITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNIAHYGCLVDLLARAGRLKEAYEVIE 533

Query: 232 EIQRK-DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVD 290
            +  K + + W A+++G   + + + A  +  ++ +  ++PD+     LL     A    
Sbjct: 534 NMPIKANSIVWGALLAGCRVYRESDMAEMVVKQILE--LEPDNGAVYVLLCNIYAACKRW 591

Query: 291 LGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLV 326
             ++    M+ D GI   P     ++++ GR  + V
Sbjct: 592 NDLRELRQMMMDKGIKKXPG--CSLIEMNGRVHEFV 625


>gi|296087368|emb|CBI33742.3| unnamed protein product [Vitis vinifera]
          Length = 562

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 217/485 (44%), Positives = 292/485 (60%), Gaps = 6/485 (1%)

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
            F R        W  +I G   + ++  A+ LF  MPEK+ VS +AM++ Y + G+LD A
Sbjct: 84  LFGRTQNPSVFFWTAIIHGHALRGDVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAA 143

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLL 180
             LF     +  V W  MI GY      +N    + L L R M+    +PN  ++ SVL 
Sbjct: 144 RVLFDGMEERDGVCWNVMIDGY-----TQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLS 198

Query: 181 GCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVT 240
            C  L +L+ G+ VH  +  + +  +    T L+ MY KCG LEDA  +F +I  KDVV 
Sbjct: 199 ACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVA 258

Query: 241 WNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV 300
           WN+MI GYA HG  ++AL+LF  M   G+ P +ITF+ +L AC H+G V  G   F+ M 
Sbjct: 259 WNSMIVGYAMHGFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMK 318

Query: 301 NDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLA 360
           ++YGI  K +HY CMV+LLGRAG + +A +L+K M  +P P ++GTLL ACR+H ++ L 
Sbjct: 319 DEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGKIALG 378

Query: 361 EFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGT 420
           E     L + N AN +G Y+ L+NIYAA+  WD VAR+R  MK++ V K PG S IEV  
Sbjct: 379 EKIVELLVDQNLAN-SGTYILLSNIYAAVGNWDGVARLRTMMKDSGVKKEPGCSSIEVNN 437

Query: 421 VVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEK 480
            VHEF +G   HP+   I+  L+E+   +K  GY P  +  LH +GE  KE+ L  HSEK
Sbjct: 438 KVHEFLAGGLNHPKRKEIYMMLEEINGWLKSHGYTPQTDIVLHDIGETEKERSLEVHSEK 497

Query: 481 LAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCS 540
           LAIAFGLI    GT I++ KNLRVC DCH  TK IS I  R+I+VRD  RFHHF +G+CS
Sbjct: 498 LAIAFGLINTQPGTTIKIVKNLRVCADCHEVTKLISKITGRKIVVRDRNRFHHFVNGSCS 557

Query: 541 CGDYW 545
           CGDYW
Sbjct: 558 CGDYW 562



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 85/348 (24%), Positives = 143/348 (41%), Gaps = 62/348 (17%)

Query: 9   WNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK 68
           W +++ G A  RG +  AQ+LFD +P+  +VS   ML+C      ++ AA   F  +  +
Sbjct: 96  WTAIIHGHA-LRGDVVSAQQLFDTMPEKSLVSLTAMLTC-YAKHGELDAARVLFDGMEER 153

Query: 69  DTASWNTMISGFVQKKNMAKARDLFLAM-------------------------------- 96
           D   WN MI G+ Q     +A  LF  M                                
Sbjct: 154 DGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVH 213

Query: 97  --PEKNSVSW-----SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVE 149
              E N + +     +A++  Y +CG L+ A  +F     K VVAW +MI GY   G+  
Sbjct: 214 SYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMHGF-- 271

Query: 150 NSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTA 209
              +++ L+L + M  +G+ P   +   +L  C H   +  G  +   +      KD   
Sbjct: 272 ---SQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKM------KDEYG 322

Query: 210 LTPLISMY-C------KCGDLEDACKLFLEIQ-RKDVVTWNAMISGYAQHGKGEKALRLF 261
           + P I  Y C      + G +E A +L   +    D V W  ++     HGK     ++ 
Sbjct: 323 IEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGKIALGEKIV 382

Query: 262 DKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKP 309
           + + D+ +  +S T++ L       G  D G+    +M+ D G+  +P
Sbjct: 383 ELLVDQNL-ANSGTYILLSNIYAAVGNWD-GVARLRTMMKDSGVKKEP 428



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 69/162 (42%), Gaps = 12/162 (7%)

Query: 193 QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHG 252
           Q+H ++F+  L         L   Y   G L+ +  LF   Q   V  W A+I G+A  G
Sbjct: 48  QIHAVLFRHGLDHHPILNFKLQRSYASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRG 107

Query: 253 KGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY 312
               A +LFD M ++ +    ++  A+L      G +D     FD M    G+      +
Sbjct: 108 DVVSAQQLFDTMPEKSL----VSLTAMLTCYAKHGELDAARVLFDGMEERDGVC-----W 158

Query: 313 TCMVDLLGRAGKLVEAVDLIKKM---PFKPQPAIFGTLLSAC 351
             M+D   + G   EA+ L ++M     KP      ++LSAC
Sbjct: 159 NVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSAC 200


>gi|326532272|dbj|BAK05065.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 889

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 215/551 (39%), Positives = 334/551 (60%), Gaps = 28/551 (5%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILL---NSDDVVAAFD 60
           + TV+W  ++ GF  Q G   ++ ELF+++    +      L+ I+    N  D+  A  
Sbjct: 358 RNTVSWTVLIGGFL-QYGCFSESLELFNQMRAELMTVDQFALATIISGCSNRMDMCLARQ 416

Query: 61  FFQRLPIKDTASW-----NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECG 115
               L +K   +      N++IS + +  N+  A  +F +M E++ VSW+ M++ Y + G
Sbjct: 417 L-HSLSLKSGHTRAVVISNSLISMYAKCGNLQNAESIFSSMEERDIVSWTGMLTAYSQVG 475

Query: 116 QLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLR-MMIGLGIRPNASS 174
            + KA E F     ++V+ W AM+  Y++ G       EDGLK+   M+    + P+  +
Sbjct: 476 NIGKAREFFDGMSTRNVITWNAMLGAYIQHGA-----EEDGLKMYSAMLTEKDVIPDWVT 530

Query: 175 LSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ 234
             ++  GC+ + + +LG Q+     K  L  DT+ +  +I+MY KCG + +A K+F  + 
Sbjct: 531 YVTLFRGCADMGANKLGDQITGHTVKVGLILDTSVMNAVITMYSKCGRISEARKIFDFLS 590

Query: 235 RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ 294
           RKD+V+WNAMI+GY+QHG G++A+ +FD M  +G KPD I++VA+L +C+H+GLV  G  
Sbjct: 591 RKDLVSWNAMITGYSQHGMGKQAIEIFDDMLKKGAKPDYISYVAVLSSCSHSGLVQEGKF 650

Query: 295 YFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVH 354
           YFD +  D+ ++   +H++CMVDLL RAG L+EA +LI +MP KP   ++G LLSAC+ H
Sbjct: 651 YFDMLKRDHNVSPGLEHFSCMVDLLARAGNLIEAKNLIDEMPMKPTAEVWGALLSACKTH 710

Query: 355 KRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYS 414
              +LAE AA +LF+L+  ++ G Y+ LA IYA   K  D A++R  M++  + K PGYS
Sbjct: 711 GNNELAELAAKHLFDLDSPDSGG-YMLLAKIYADAGKSVDSAQVRKLMRDKGIKKNPGYS 769

Query: 415 WIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLL 474
           W+EV   VH F++ D  HP++++I EKL EL +++   GYV           E ++ +  
Sbjct: 770 WMEVKNKVHVFKAEDVSHPQVIAIREKLDELMEKIAQLGYVRT---------ESLRSE-- 818

Query: 475 LFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHF 534
           + HSEKLA+AFG++ +P   PI + KNLR+CGDCH   K IS +  RE ++RD  RFHHF
Sbjct: 819 IHHSEKLAVAFGIMNLPAWMPIHIMKNLRICGDCHTVIKLISTVTGREFVIRDAVRFHHF 878

Query: 535 KDGTCSCGDYW 545
           K G+CSCGDYW
Sbjct: 879 KGGSCSCGDYW 889



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 106/442 (23%), Positives = 193/442 (43%), Gaps = 66/442 (14%)

Query: 7   VNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLS----------------CILL 50
           +  N ++ G+AK  G L DA+ELF ++P+ DV S+N ++S                 +  
Sbjct: 96  ITHNIMMNGYAKL-GSLSDAEELFGRMPRRDVTSWNTLMSGYYQSGRFLDAMESFVSMRR 154

Query: 51  NSDDVVAAFDFFQRLPIKDTASWNT-----------------------MISGFVQKKNMA 87
           + D +  AF F   +       W+                        ++  FV+   + 
Sbjct: 155 SGDSLPNAFTFGCAMKSCGALGWHEVALQLLGLLTKFGFQGDPDVATGIVDMFVRCGAVD 214

Query: 88  KARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGY 147
            A   F  +        ++M++GY +   +D A+ELF+  P + VV+W  M+S   + G 
Sbjct: 215 FASKQFSQIERPTVFCRNSMLAGYAKSYGVDHALELFESMPERDVVSWNMMVSALSQSGR 274

Query: 148 VENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDT 207
                A + L +   M   G+R ++++ +S L  C+ LSSL  GKQ+H  V +S  C D 
Sbjct: 275 -----AREALSVAVDMHNRGVRLDSTTYTSSLTACAKLSSLGWGKQLHAQVIRSLPCIDP 329

Query: 208 TALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE 267
              + ++ +Y KCG  ++A ++F  ++ ++ V+W  +I G+ Q+G   ++L LF++M+ E
Sbjct: 330 YVASAMVELYAKCGCFKEARRVFSSLRDRNTVSWTVLIGGFLQYGCFSESLELFNQMRAE 389

Query: 268 GMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY------TCMVDLLGR 321
            M  D      ++  C++   + L  Q        + ++ K  H         ++ +  +
Sbjct: 390 LMTVDQFALATIISGCSNRMDMCLARQL-------HSLSLKSGHTRAVVISNSLISMYAK 442

Query: 322 AGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAE-FAAMNLFNLNPANAA-GCY 379
            G L  A  +   M  +   +  G L +  +V       E F  M+  N+   NA  G Y
Sbjct: 443 CGNLQNAESIFSSMEERDIVSWTGMLTAYSQVGNIGKAREFFDGMSTRNVITWNAMLGAY 502

Query: 380 VQLA------NIYAAMKKWDDV 395
           +Q         +Y+AM    DV
Sbjct: 503 IQHGAEEDGLKMYSAMLTEKDV 524



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 72/287 (25%), Positives = 125/287 (43%), Gaps = 37/287 (12%)

Query: 74  NTMISGFVQKKNMAKARDLFLA-MPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSV 132
           NT++  ++    +  AR L    + E N ++ + M++GY + G L  A ELF   P + V
Sbjct: 67  NTLLHAYLSCGALPDARGLLRGDITEPNVITHNIMMNGYAKLGSLSDAEELFGRMPRRDV 126

Query: 133 VAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGK 192
            +W  ++SGY + G   ++  E  + + R    L   PNA +    +  C  L   ++  
Sbjct: 127 TSWNTLMSGYYQSGRFLDA-MESFVSMRRSGDSL---PNAFTFGCAMKSCGALGWHEVAL 182

Query: 193 QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR----------------- 235
           Q+  L+ K     D    T ++ M+ +CG ++ A K F +I+R                 
Sbjct: 183 QLLGLLTKFGFQGDPDVATGIVDMFVRCGAVDFASKQFSQIERPTVFCRNSMLAGYAKSY 242

Query: 236 --------------KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLL 281
                         +DVV+WN M+S  +Q G+  +AL +   M + G++ DS T+ + L 
Sbjct: 243 GVDHALELFESMPERDVVSWNMMVSALSQSGRAREALSVAVDMHNRGVRLDSTTYTSSLT 302

Query: 282 ACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEA 328
           AC     +  G Q    ++        P   + MV+L  + G   EA
Sbjct: 303 ACAKLSSLGWGKQLHAQVIRSLP-CIDPYVASAMVELYAKCGCFKEA 348


>gi|15223099|ref|NP_172286.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174869|sp|Q9LN01.1|PPR21_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g08070
 gi|8778839|gb|AAF79838.1|AC026875_18 T6D22.15 [Arabidopsis thaliana]
 gi|332190118|gb|AEE28239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 741

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 228/568 (40%), Positives = 329/568 (57%), Gaps = 48/568 (8%)

Query: 19  QRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMIS 78
           Q G+L+DA ++FDK P  DVVSY  ++     +   +  A   F  +P+KD  SWN MIS
Sbjct: 181 QNGRLEDAHKVFDKSPHRDVVSYTALIKG-YASRGYIENAQKLFDEIPVKDVVSWNAMIS 239

Query: 79  GFVQKKNMAKARDLFLAM------PEKNSVS--------------------W-------- 104
           G+ +  N  +A +LF  M      P+++++                     W        
Sbjct: 240 GYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGS 299

Query: 105 -----SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKL 159
                +A+I  Y +CG+L+ A  LF+  P K V++W  +I GY      +     + L L
Sbjct: 300 NLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYK-----EALLL 354

Query: 160 LRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK--SPLCKDTTALTPLISMY 217
            + M+  G  PN  ++ S+L  C+HL ++ +G+ +H  + K    +   ++  T LI MY
Sbjct: 355 FQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMY 414

Query: 218 CKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFV 277
            KCGD+E A ++F  I  K + +WNAMI G+A HG+ + +  LF +M+  G++PD ITFV
Sbjct: 415 AKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFV 474

Query: 278 ALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPF 337
            LL AC+H+G++DLG   F +M  DY +  K +HY CM+DLLG +G   EA ++I  M  
Sbjct: 475 GLLSACSHSGMLDLGRHIFRTMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEM 534

Query: 338 KPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVAR 397
           +P   I+ +LL AC++H  ++L E  A NL  + P N  G YV L+NIYA+  +W++VA+
Sbjct: 535 EPDGVIWCSLLKACKMHGNVELGESFAENLIKIEPENP-GSYVLLSNIYASAGRWNEVAK 593

Query: 398 IRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPD 457
            R  + +  + K+PG S IE+ +VVHEF  GD+ HP    I+  L+E+E  ++ AG+VPD
Sbjct: 594 TRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFVPD 653

Query: 458 LEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISA 517
               L  + EE KE  L  HSEKLAIAFGLI    GT + + KNLRVC +CH ATK IS 
Sbjct: 654 TSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISK 713

Query: 518 IEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           I KREII RD TRFHHF+DG CSC DYW
Sbjct: 714 IYKREIIARDRTRFHHFRDGVCSCNDYW 741



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 93/299 (31%), Positives = 159/299 (53%), Gaps = 15/299 (5%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVV 133
            ++IS +VQ   +  A  +F   P ++ VS++A+I GY   G ++ A +LF   PVK VV
Sbjct: 173 TSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVV 232

Query: 134 AWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ 193
           +W AMISGY + G       ++ L+L + M+   +RP+ S++ +V+  C+   S++LG+Q
Sbjct: 233 SWNAMISGYAETGNY-----KEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQ 287

Query: 194 VHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGK 253
           VH  +       +   +  LI +Y KCG+LE AC LF  +  KDV++WN +I GY     
Sbjct: 288 VHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNL 347

Query: 254 GEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ---YFDSMVNDYGIAAKPD 310
            ++AL LF +M   G  P+ +T +++L AC H G +D+G     Y D  +   G+     
Sbjct: 348 YKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLK--GVTNASS 405

Query: 311 HYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFN 369
             T ++D+  + G +  A  +   +  K   + +  ++    +H R D    A+ +LF+
Sbjct: 406 LRTSLIDMYAKCGDIEAAHQVFNSILHKSLSS-WNAMIFGFAMHGRAD----ASFDLFS 459



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 81/253 (32%), Positives = 120/253 (47%), Gaps = 37/253 (14%)

Query: 117 LDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLS 176
           L  A+ +FK     +++ W  M  G+       +S     LKL   MI LG+ PN+ +  
Sbjct: 84  LPYAISVFKTIQEPNLLIWNTMFRGH-----ALSSDPVSALKLYVCMISLGLLPNSYTFP 138

Query: 177 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK-------- 228
            VL  C+   + + G+Q+H  V K     D    T LISMY + G LEDA K        
Sbjct: 139 FVLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHR 198

Query: 229 -----------------------LFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMK 265
                                  LF EI  KDVV+WNAMISGYA+ G  ++AL LF  M 
Sbjct: 199 DVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMM 258

Query: 266 DEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKL 325
              ++PD  T V ++ AC  +G ++LG Q     ++D+G  +       ++DL  + G+L
Sbjct: 259 KTNVRPDESTMVTVVSACAQSGSIELGRQ-VHLWIDDHGFGSNLKIVNALIDLYSKCGEL 317

Query: 326 VEAVDLIKKMPFK 338
             A  L +++P+K
Sbjct: 318 ETACGLFERLPYK 330


>gi|224143620|ref|XP_002325018.1| predicted protein [Populus trichocarpa]
 gi|222866452|gb|EEF03583.1| predicted protein [Populus trichocarpa]
          Length = 695

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 213/497 (42%), Positives = 304/497 (61%), Gaps = 11/497 (2%)

Query: 54  DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKN----SVSWSAMIS 109
           ++  A   F R+ I++  +WN MISG+++ +   K  DLF  M   N     V+ S+++ 
Sbjct: 205 EIDQARRLFDRMVIRNVVTWNLMISGYLKNRQPEKCIDLFHEMQVSNLKPDQVTASSVLG 264

Query: 110 GYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIR 169
            YI+ G +D+A ++F     K  V WT MI      G  +N   ED L L   M+    R
Sbjct: 265 AYIQAGYIDEARKVFGEIREKDEVCWTIMI-----VGCAQNGKEEDALLLFSEMLLENAR 319

Query: 170 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 229
           P+  ++SSV+  C+ L+SL  G+ VH   F   +  D    + L+ MYCKCG   DA  +
Sbjct: 320 PDGYTISSVVSSCAKLASLYHGQVVHGKAFLMGVNDDLLVSSALVDMYCKCGVTRDAWTI 379

Query: 230 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLV 289
           F  +Q ++VV+WN+MI GYA +G+  +AL L++ M +E +KPDS+TFV +L AC HAGLV
Sbjct: 380 FSTMQTRNVVSWNSMIGGYALNGQDLEALSLYENMLEENLKPDSVTFVGVLSACVHAGLV 439

Query: 290 DLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLS 349
           + G +YF SM + +G+   PDHY CMV+L GR+G + +AVDLI  M  +P   I+ T+LS
Sbjct: 440 EEGKEYFCSMSDQHGLEPTPDHYACMVNLFGRSGHMDKAVDLISSMSQEPNSLIWTTVLS 499

Query: 350 ACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVK 409
            C +   +   E AA  L  LNP NA   Y+ L+N+YAA  +W DVA IR  MK  +V K
Sbjct: 500 VCVMKGDIKHGEMAARCLIELNPFNAVP-YIMLSNMYAARGRWKDVASIRSLMKSKHVKK 558

Query: 410 MPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEV 469
              YSWIE+   VH+F + DR HP+   IH +L  L ++++ AG+ P+    LH  GE+ 
Sbjct: 559 FSAYSWIEIDNEVHKFVADDRTHPDAKIIHVQLNRLIRKLQEAGFSPNTNLVLHDFGEDE 618

Query: 470 KEQLLLFHSEKLAIAFGLIKVPLG-TPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDT 528
           K + + +HSEKLA+A+GLIK P G TPIR+ KN+R C DCH   K++S I +R +I+RD+
Sbjct: 619 KLESINYHSEKLALAYGLIKKPHGVTPIRIIKNIRTCADCHIFMKFVSNITRRPVILRDS 678

Query: 529 TRFHHFKDGTCSCGDYW 545
            RFHHF +G CSC DYW
Sbjct: 679 NRFHHFVEGKCSCKDYW 695



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 79/287 (27%), Positives = 144/287 (50%), Gaps = 13/287 (4%)

Query: 68  KDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVA 127
            DT   N +++ + +   ++ AR LF  M ++++ SW+AM+S Y + G ++    +F   
Sbjct: 56  NDTFIHNRLLNLYAKSGEISHARKLFDEMTQRDNFSWNAMLSLYAKSGLVEDLRVIFDNM 115

Query: 128 PVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSS 187
           P +  V++  +ISG+       N      L +   M   G++P   +  SVL  C+ L  
Sbjct: 116 PSRDSVSYNTVISGF-----AGNGRGGPALGVFLRMQKEGLKPTEYTHVSVLNACTQLLD 170

Query: 188 LQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISG 247
           L+ GKQ+H  +    L  +      L  +Y +CG+++ A +LF  +  ++VVTWN MISG
Sbjct: 171 LRRGKQIHGRIIICNLGGNVFVCNALTDLYARCGEIDQARRLFDRMVIRNVVTWNLMISG 230

Query: 248 YAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAA 307
           Y ++ + EK + LF +M+   +KPD +T  ++L A   AG +D   + F  +     +  
Sbjct: 231 YLKNRQPEKCIDLFHEMQVSNLKPDQVTASSVLGAYIQAGYIDEARKVFGEIREKDEVC- 289

Query: 308 KPDHYTCMVDLLGRAGKLVEAVDLIKKMPF---KPQPAIFGTLLSAC 351
               +T M+    + GK  +A+ L  +M     +P      +++S+C
Sbjct: 290 ----WTIMIVGCAQNGKEEDALLLFSEMLLENARPDGYTISSVVSSC 332



 Score = 40.4 bits (93), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 32/150 (21%), Positives = 73/150 (48%), Gaps = 11/150 (7%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M V   +  +S L     + G  +DA  +F  +   +VVS+N M+    LN  D + A  
Sbjct: 351 MGVNDDLLVSSALVDMYCKCGVTRDAWTIFSTMQTRNVVSWNSMIGGYALNGQD-LEALS 409

Query: 61  FFQRLPIK----DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVS-----WSAMISGY 111
            ++ +  +    D+ ++  ++S  V    + + ++ F +M +++ +      ++ M++ +
Sbjct: 410 LYENMLEENLKPDSVTFVGVLSACVHAGLVEEGKEYFCSMSDQHGLEPTPDHYACMVNLF 469

Query: 112 IECGQLDKAVELF-KVAPVKSVVAWTAMIS 140
              G +DKAV+L   ++   + + WT ++S
Sbjct: 470 GRSGHMDKAVDLISSMSQEPNSLIWTTVLS 499


>gi|359486044|ref|XP_002269662.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Vitis vinifera]
          Length = 689

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 207/475 (43%), Positives = 308/475 (64%), Gaps = 10/475 (2%)

Query: 75  TMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVA 134
           ++I  +V+   +  AR LF  M  ++  SW+A+I+GY++ G++  A +LF+    +++V+
Sbjct: 221 SLIDMYVKCGVIGDARKLFDKMIVRDMASWNALIAGYMKEGEIGVAEDLFERMEHRNIVS 280

Query: 135 WTAMISGYMKFGYVENSWAEDGLKLLRMMI--GLGIRPNASSLSSVLLGCSHLSSLQLGK 192
           WTAMISGY      +N +AE  L L   M+  G  ++PN  ++ SVL  C+  ++L+ G+
Sbjct: 281 WTAMISGY-----TQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALERGR 335

Query: 193 QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA--CKLFLEIQRKDVVTWNAMISGYAQ 250
           ++H       L  +++  T L  MY KC  L +A  C   +    K+++ WN MI+ YA 
Sbjct: 336 RIHDFANGIGLHLNSSVQTALAGMYAKCYSLVEARCCFDMIAQNGKNLIAWNTMITAYAS 395

Query: 251 HGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPD 310
           HG G +A+ +F+ M   G++PD++TF+ LL  C+H+GL+D G+ +F+ M   + +  + +
Sbjct: 396 HGCGVEAVSIFENMLRAGVQPDAVTFMGLLSGCSHSGLIDAGLNHFNDMGTIHSVEPRVE 455

Query: 311 HYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNL 370
           HY C+VDLLGRAG+LVEA +LI +MP +  P+++G LL+ACR H+ L++AE AA  LF L
Sbjct: 456 HYACVVDLLGRAGRLVEAKELISQMPMQAGPSVWGALLAACRSHRNLEIAELAARRLFVL 515

Query: 371 NPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDR 430
            P N+ G YV L+N+YA    W++V ++R  +K   + K PG SWIE+    H F   D+
Sbjct: 516 EPDNS-GNYVLLSNLYAEAGMWEEVKKLRALLKYQGMKKSPGCSWIEINGKSHLFMGADK 574

Query: 431 VHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKV 490
            HP+   I++ L+ L +++K+AGY+PD  F LH + EE KE  L  HSEKLAIAFGL+  
Sbjct: 575 SHPQAKEIYKFLEALPEKIKMAGYIPDTSFVLHDISEEEKEYNLTTHSEKLAIAFGLLNT 634

Query: 491 PLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
             G  +RV KNLR+CGDCH ATK+IS I +REIIVRD  RFH FKDG+CSCGDYW
Sbjct: 635 RPGVVLRVTKNLRICGDCHAATKFISKIYEREIIVRDLNRFHCFKDGSCSCGDYW 689



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 79/282 (28%), Positives = 126/282 (44%), Gaps = 37/282 (13%)

Query: 80  FVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMI 139
           F++    A A+ +   + + N+   + M++ Y   G LD AV +F      S + + ++I
Sbjct: 92  FIKLGQQAHAQIVLHGL-QPNAFLAAKMVAMYASSGDLDSAVVVFDRIDNPSSLLYNSII 150

Query: 140 SGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVF 199
             Y + G          L+    M  LG+  +  +L  VL  C+ LS + +G+ VH    
Sbjct: 151 RAYTRHGXXXXXXXX--LEAYARMHFLGLLGDNFTLPFVLKSCADLSRVCMGRCVHGQGL 208

Query: 200 KSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNA---------------- 243
           +  L  D      LI MY KCG + DA KLF ++  +D+ +WNA                
Sbjct: 209 RVGLEGDFYVGASLIDMYVKCGVIGDARKLFDKMIVRDMASWNALIAGYMKEGEIGVAED 268

Query: 244 ---------------MISGYAQHGKGEKALRLFDKMKDEG--MKPDSITFVALLLACNHA 286
                          MISGY Q+G  E+AL LFD+M  +G  MKP+ +T V++L AC  +
Sbjct: 269 LFERMEHRNIVSWTAMISGYTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQS 328

Query: 287 GLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEA 328
             ++ G +  D   N  G+       T +  +  +   LVEA
Sbjct: 329 AALERGRRIHD-FANGIGLHLNSSVQTALAGMYAKCYSLVEA 369



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 48/203 (23%), Positives = 99/203 (48%), Gaps = 19/203 (9%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLN--SDDVVAA 58
           M V+   +WN+++AG+ K+ G++  A++LF+++   ++VS+  M+S    N  ++  +  
Sbjct: 242 MIVRDMASWNALIAGYMKE-GEIGVAEDLFERMEHRNIVSWTAMISGYTQNGFAEQALGL 300

Query: 59  FDFFQRLPIKDTASWNTMIS---GFVQKKNMAKARDLF-----LAMPEKNSVSWSAMISG 110
           FD   +   +   +W T++S      Q   + + R +      + +   +SV  +A+   
Sbjct: 301 FDEMLQDGSEMKPNWVTIVSVLPACAQSAALERGRRIHDFANGIGLHLNSSVQ-TALAGM 359

Query: 111 YIECGQLDKAVELFKVAPV--KSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGI 168
           Y +C  L +A   F +     K+++AW  MI+ Y   G        + + +   M+  G+
Sbjct: 360 YAKCYSLVEARCCFDMIAQNGKNLIAWNTMITAYASHG-----CGVEAVSIFENMLRAGV 414

Query: 169 RPNASSLSSVLLGCSHLSSLQLG 191
           +P+A +   +L GCSH   +  G
Sbjct: 415 QPDAVTFMGLLSGCSHSGLIDAG 437



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 63/279 (22%), Positives = 117/279 (41%), Gaps = 22/279 (7%)

Query: 170 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 229
           P+ SS + +    +  + ++LG+Q H  +    L  +      +++MY   GDL+ A  +
Sbjct: 75  PHPSSYAPIFQFLTRHNFIKLGQQAHAQIVLHGLQPNAFLAAKMVAMYASSGDLDSAVVV 134

Query: 230 FLEIQRKDVVTWNAMISGYAQHG---KGEKALRLFDKMKDEGMKPDSITFVALLLACNHA 286
           F  I     + +N++I  Y +HG        L  + +M   G+  D+ T   +L +C   
Sbjct: 135 FDRIDNPSSLLYNSIIRAYTRHGXXXXXXXXLEAYARMHFLGLLGDNFTLPFVLKSC--- 191

Query: 287 GLVDLGIQYFDSMVNDYG--IAAKPDHY--TCMVDLLGRAGKLVEAVDLIKKMPFKPQPA 342
              DL        V+  G  +  + D Y    ++D+  + G + +A  L  KM  +   A
Sbjct: 192 --ADLSRVCMGRCVHGQGLRVGLEGDFYVGASLIDMYVKCGVIGDARKLFDKMIVRDM-A 248

Query: 343 IFGTLLSACRVHKRLDLAE--FAAMNLFNLNPANAA-GCYVQLANIYAAMKKWDDVARIR 399
            +  L++       + +AE  F  M   N+    A    Y Q      A+  +D++ +  
Sbjct: 249 SWNALIAGYMKEGEIGVAEDLFERMEHRNIVSWTAMISGYTQNGFAEQALGLFDEMLQDG 308

Query: 400 LSMKENNVV---KMPG---YSWIEVGTVVHEFRSGDRVH 432
             MK N V     +P     + +E G  +H+F +G  +H
Sbjct: 309 SEMKPNWVTIVSVLPACAQSAALERGRRIHDFANGIGLH 347


>gi|125537719|gb|EAY84114.1| hypothetical protein OsI_05496 [Oryza sativa Indica Group]
          Length = 751

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 223/575 (38%), Positives = 326/575 (56%), Gaps = 46/575 (8%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
            S L     + G ++DA+ +F ++    VV YN +++  LL    +  A   FQ +  +D
Sbjct: 184 GSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLITG-LLRCKMIEDAKGLFQLMVDRD 242

Query: 70  TASWNTMISGFVQKKNMAKARDLFLAMP-------------------------------- 97
           + +W TM++G  Q     +A D+F  M                                 
Sbjct: 243 SITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSILTACGALAASEEGKQIHA 302

Query: 98  -------EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVEN 150
                  E N    SA++  Y +C  +  A  +F+    +++++WTAMI      GY +N
Sbjct: 303 YITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRNIISWTAMI-----VGYGQN 357

Query: 151 SWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTAL 210
           + +E+ ++    M   GI+P+  +L SV+  C++L+SL+ G Q H L   S L +  T  
Sbjct: 358 ACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMRYITVS 417

Query: 211 TPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMK 270
             L+++Y KCG +EDA +LF E+   D V+W A+++GYAQ GK ++ + LF+KM   G+K
Sbjct: 418 NALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKETIDLFEKMLVNGLK 477

Query: 271 PDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVD 330
           PD +TF+ +L AC+ AGLV+ G  YFDSM  D+ I    DHYTCM+DL  R+G+  EA +
Sbjct: 478 PDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDHDIVPIDDHYTCMIDLYSRSGRFKEAEE 537

Query: 331 LIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMK 390
            IK+MP  P    + TLLS+CR+   +++ ++AA NL   +P N A  YV L +++AA  
Sbjct: 538 FIKQMPHSPDAFGWATLLSSCRLRGNMEIGKWAAENLLETDPQNPAS-YVLLCSMHAAKG 596

Query: 391 KWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMK 450
           +W +VA +R  M++  V K PG SWI+    VH F + D+ HP    I+EKL+ L  +M 
Sbjct: 597 QWTEVAHLRRGMRDRQVKKEPGCSWIKYKNKVHIFSADDQSHPFSSRIYEKLEWLNSKMA 656

Query: 451 LAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHR 510
             GY PD+   LH V +  K  ++  HSEKLAIAFGLI VP   PIR+ KNLRVC DCH 
Sbjct: 657 EEGYKPDVSSVLHDVADADKVHMISHHSEKLAIAFGLIFVPQEMPIRIVKNLRVCVDCHN 716

Query: 511 ATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           ATK+IS I  R+I+VRD  RFH F DGTCSCGD+W
Sbjct: 717 ATKFISKITGRDILVRDAVRFHKFSDGTCSCGDFW 751



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 105/441 (23%), Positives = 192/441 (43%), Gaps = 101/441 (22%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
           N +L  +AK  G+L  A+ +FD++P P++ + N +LS  L +S  V      F  +P +D
Sbjct: 52  NHLLTAYAKS-GRLARARRVFDEMPDPNLFTRNALLSA-LAHSRLVPDMERLFASMPERD 109

Query: 70  TASWNTMISGFVQKKNMAKARDLFLAMPEKNSV-----SWSAMI---------------- 108
             S+N +I+GF    + A++  L+ A+  + SV     + SAMI                
Sbjct: 110 AVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVASALSDRALGHSVH 169

Query: 109 -------------------SGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVE 149
                                Y + G +  A  +F+    K+VV +  +I+G ++   +E
Sbjct: 170 CQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLITGLLRCKMIE 229

Query: 150 N--------------SW-------AEDGLKL-----LRMMIGLGIRPNASSLSSVLLGCS 183
           +              +W        ++GL+L      R M   G+  +  +  S+L  C 
Sbjct: 230 DAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSILTACG 289

Query: 184 HLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNA 243
            L++ + GKQ+H  + ++    +    + L+ MY KC  +  A  +F  +  +++++W A
Sbjct: 290 ALAASEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRNIISWTA 349

Query: 244 MISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYF------- 296
           MI GY Q+   E+A+R F +M+ +G+KPD  T  +++ +C +   ++ G Q+        
Sbjct: 350 MIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSG 409

Query: 297 --------DSMVNDYGIAAKPD---------------HYTCMVDLLGRAGKLVEAVDLIK 333
                   +++V  YG     +                +T +V    + GK  E +DL +
Sbjct: 410 LMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKETIDLFE 469

Query: 334 KM---PFKPQPAIFGTLLSAC 351
           KM     KP    F  +LSAC
Sbjct: 470 KMLVNGLKPDGVTFIGVLSAC 490



 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 69/266 (25%), Positives = 119/266 (44%), Gaps = 40/266 (15%)

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
           F Q  P   T   N +++ + +   +A+AR +F  MP+ N  + +A++S       +   
Sbjct: 42  FLQAPP---TFLLNHLLTAYAKSGRLARARRVFDEMPDPNLFTRNALLSALAHSRLVPDM 98

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI-GLGIRPNASSLSSVL 179
             LF   P +  V++ A+I+G+   G    S     ++L R ++    +RP   +LS+++
Sbjct: 99  ERLFASMPERDAVSYNALITGFSSTGSPARS-----VQLYRALLREESVRPTRITLSAMI 153

Query: 180 LGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK--- 236
           +  S LS   LG  VH  V +          +PL+ MY K G + DA ++F E++ K   
Sbjct: 154 MVASALSDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVV 213

Query: 237 ----------------------------DVVTWNAMISGYAQHGKGEKALRLFDKMKDEG 268
                                       D +TW  M++G  Q+G   +AL +F +M+ EG
Sbjct: 214 MYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEG 273

Query: 269 MKPDSITFVALLLACNHAGLVDLGIQ 294
           +  D  TF ++L AC      + G Q
Sbjct: 274 VGIDQYTFGSILTACGALAASEEGKQ 299



 Score = 42.0 bits (97), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 41/202 (20%), Positives = 84/202 (41%), Gaps = 43/202 (21%)

Query: 186 SSLQLGKQVHQLVFKSPL-CKDTTALTPLISMYCKCGDLE-------------------- 224
           + +++   VH L+ K+ L    T  L  L++ Y K G L                     
Sbjct: 26  TGVRVAGAVHCLILKTFLQAPPTFLLNHLLTAYAKSGRLARARRVFDEMPDPNLFTRNAL 85

Query: 225 -----------DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDK-MKDEGMKPD 272
                      D  +LF  +  +D V++NA+I+G++  G   ++++L+   +++E ++P 
Sbjct: 86  LSALAHSRLVPDMERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPT 145

Query: 273 SITFVALLLACNHAGLVDLG----IQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEA 328
            IT  A+++  +      LG     Q        Y     P     +VD+  + G + +A
Sbjct: 146 RITLSAMIMVASALSDRALGHSVHCQVLRLGFGAYAFVGSP-----LVDMYAKMGLIRDA 200

Query: 329 VDLIKKMPFKPQPAIFGTLLSA 350
             + ++M  K    ++ TL++ 
Sbjct: 201 RRVFQEMEAK-TVVMYNTLITG 221


>gi|302780040|ref|XP_002971795.1| hypothetical protein SELMODRAFT_95653 [Selaginella moellendorffii]
 gi|300160927|gb|EFJ27544.1| hypothetical protein SELMODRAFT_95653 [Selaginella moellendorffii]
          Length = 782

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 221/544 (40%), Positives = 337/544 (61%), Gaps = 15/544 (2%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSD--DVVAAFDFFQRLPI 67
           NS +  F    G L DA+ LF+ +   DVV++NI+++  + N +  + V  F   Q+  I
Sbjct: 246 NSAMNMFGNA-GLLGDARRLFEDMVDRDVVTWNIVITFYVQNENFGEAVRLFGRLQQDGI 304

Query: 68  K-DTASWNTMISGFVQKKNMAKARDLFLAMPE----KNSVSWSAMISGYIECGQLDKAVE 122
           K +  ++  M++ +    ++AK + +   + E    ++ V  +A++S Y  C    +A +
Sbjct: 305 KANDITFVLMLNVYTSLTSLAKGKVIHELVKEAGYDRDVVVATALMSLYGRCEAPGQAWK 364

Query: 123 LFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGC 182
           +F     K V+ WT M        Y +N + ++ L+L + M   G RP +++L +VL  C
Sbjct: 365 IFVDMGSKDVITWTVMC-----VAYAQNGFRKEALQLFQEMQLEGRRPTSATLVAVLDTC 419

Query: 183 SHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWN 242
           +HL++LQ G+Q+H  + ++    +    T LI+MY KCG + +A  +F ++ ++D++ WN
Sbjct: 420 AHLAALQKGRQIHSHIIENGFRMEMVVETALINMYGKCGKMAEARSVFEKMAKRDILVWN 479

Query: 243 AMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVND 302
           +M+  YAQHG  ++ L+LF++M+ +G K D+++FV++L A +H+G V  G QYF +M+ D
Sbjct: 480 SMLGAYAQHGYYDETLQLFNQMQLDGEKADAVSFVSVLSALSHSGSVTDGYQYFVAMLQD 539

Query: 303 YGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP-FKPQPAIFGTLLSACRVHKRLDLAE 361
           + I   P+ Y C+VDLLGRAG++ EAVD++ K+    P   ++ TLL ACR H + D A+
Sbjct: 540 FSITPTPELYGCVVDLLGRAGRIQEAVDIVLKLSGCLPDGILWMTLLGACRTHNKTDQAK 599

Query: 362 FAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTV 421
            AA  +   +P+++ G YV L+N+YAA   WD V R+R  M+   V K PG S IE+   
Sbjct: 600 AAAEQVLERDPSHS-GAYVVLSNVYAAAGDWDGVNRMRKLMRSRGVKKEPGRSSIEILNR 658

Query: 422 VHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKL 481
           VHEF  GDR HP    I+ +L  L   M+ AGY+PD +  LH V +E KE +L +HSE+L
Sbjct: 659 VHEFLEGDRSHPRRHPIYAELDVLNSEMRAAGYIPDTKMILHDVEDERKEDMLFYHSERL 718

Query: 482 AIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSC 541
           AIAFGL+  P GTP+RV KNLRVC DCH ATKYIS +  REI+VRDT RFH+FKDG CSC
Sbjct: 719 AIAFGLMSTPPGTPLRVIKNLRVCSDCHTATKYISKLRGREILVRDTHRFHNFKDGRCSC 778

Query: 542 GDYW 545
            DYW
Sbjct: 779 KDYW 782



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 78/270 (28%), Positives = 130/270 (48%), Gaps = 14/270 (5%)

Query: 19  QRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQR-----LPIKDT--A 71
           Q G + +AQ++F+ + + DV ++  M+       D   A   F+Q      +P K T  A
Sbjct: 52  QCGSVPEAQQVFEILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVA 111

Query: 72  SWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKS 131
             N   S    K  M     +     E +    +A+I+ Y +CG +  A + FK    + 
Sbjct: 112 ILNACASTESLKDGMEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRD 171

Query: 132 VVAWTAMISGYMKFG-YVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQL 190
           VV+WTAMI+  ++   +    W      L R M   G+ PN  +L +V         L  
Sbjct: 172 VVSWTAMIAACVQHDQFALARW------LYRRMQLDGVVPNKITLYTVFNAYGDPHYLSE 225

Query: 191 GKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQ 250
           GK ++ LV    +  D   +   ++M+   G L DA +LF ++  +DVVTWN +I+ Y Q
Sbjct: 226 GKFIYSLVSSRVMESDVRVMNSAMNMFGNAGLLGDARRLFEDMVDRDVVTWNIVITFYVQ 285

Query: 251 HGKGEKALRLFDKMKDEGMKPDSITFVALL 280
           +    +A+RLF +++ +G+K + ITFV +L
Sbjct: 286 NENFGEAVRLFGRLQQDGIKANDITFVLML 315



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 64/238 (26%), Positives = 116/238 (48%), Gaps = 6/238 (2%)

Query: 98  EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGL 157
           E+N++    +I  Y +CG + +A ++F++   K V AWT MI  Y + G  + +     L
Sbjct: 37  EQNNLVCGHLIQMYAQCGSVPEAQQVFEILERKDVFAWTRMIGIYCQQGDYDRA-----L 91

Query: 158 KLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMY 217
            +   M    + P   +  ++L  C+   SL+ G ++H  + +     D    T LI+MY
Sbjct: 92  GMFYQMQEEDVMPTKVTYVAILNACASTESLKDGMEIHGQILQQGFEGDVFVGTALINMY 151

Query: 218 CKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFV 277
            KCG +  A   F  ++ +DVV+W AMI+   QH +   A  L+ +M+ +G+ P+ IT  
Sbjct: 152 NKCGSVRGAWDSFKRLEHRDVVSWTAMIAACVQHDQFALARWLYRRMQLDGVVPNKITLY 211

Query: 278 ALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335
            +  A      +  G ++  S+V+   + +        +++ G AG L +A  L + M
Sbjct: 212 TVFNAYGDPHYLSEG-KFIYSLVSSRVMESDVRVMNSAMNMFGNAGLLGDARRLFEDM 268



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 50/195 (25%), Positives = 99/195 (50%), Gaps = 2/195 (1%)

Query: 168 IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC 227
            +P+ +   ++L  CS   ++  G++VH  V      ++      LI MY +CG + +A 
Sbjct: 1   FKPDTAFFVALLQRCSSAKNVDHGRRVHWHVCDRGFEQNNLVCGHLIQMYAQCGSVPEAQ 60

Query: 228 KLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG 287
           ++F  ++RKDV  W  MI  Y Q G  ++AL +F +M++E + P  +T+VA+L AC    
Sbjct: 61  QVFEILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTE 120

Query: 288 LVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTL 347
            +  G++    ++   G        T ++++  + G +  A D  K++  +   + +  +
Sbjct: 121 SLKDGMEIHGQILQQ-GFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVS-WTAM 178

Query: 348 LSACRVHKRLDLAEF 362
           ++AC  H +  LA +
Sbjct: 179 IAACVQHDQFALARW 193


>gi|357149883|ref|XP_003575265.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Brachypodium distachyon]
          Length = 877

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 228/536 (42%), Positives = 319/536 (59%), Gaps = 17/536 (3%)

Query: 19  QRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMIS 78
           + G L DA+++FD IPQ D+V +N ++S     +     A   F R+  +      T ++
Sbjct: 350 KHGLLDDAKKVFDWIPQRDLVLWNALISGCSHGAQHA-EALSLFCRMRKEGFDVNRTTLA 408

Query: 79  GFVQK----KNMAKARDLFLAMPEK-----NSVSWSAMISGYIECGQLDKAVELFKVAPV 129
             ++     + ++  R +  A+ EK     +S   + +I  Y +C  L+ A  +F+    
Sbjct: 409 AVLKSTASLEAISDTRQVH-ALAEKLGFLSDSHVVNGLIDSYWKCDCLNYAYRVFEKHGS 467

Query: 130 KSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQ 189
             ++A+T+MI+   +  +      ED +KL   M+  G+ P+   LSS+L  C+ LS+ +
Sbjct: 468 YDIIAFTSMITALSQCDH-----GEDAIKLFMEMLRKGLDPDPFVLSSLLNACASLSAYE 522

Query: 190 LGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYA 249
            GKQVH  + K     D  A   L+  Y KCG +EDA   F  +  K VV+W+AMI G A
Sbjct: 523 QGKQVHAHLIKRQFMSDVFAGNALVYTYAKCGSIEDADLAFSGLPEKGVVSWSAMIGGLA 582

Query: 250 QHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKP 309
           QHG G++AL +F +M DE + P+ IT  ++L ACNHAGLVD   +YF+SM   +GI    
Sbjct: 583 QHGHGKRALDVFHRMVDEHISPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIERTE 642

Query: 310 DHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFN 369
           +HY CM+DLLGRAGKL +A++L+  MPF+   A++G LL+A RVH+  +L   AA  LF 
Sbjct: 643 EHYACMIDLLGRAGKLDDAMELVNSMPFQTNAAVWGALLAASRVHRDPELGRLAAEKLFI 702

Query: 370 LNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGD 429
           L P   +G +V LAN YA+   WDDVA++R  MK++ V K P  SW+E+   VH F  GD
Sbjct: 703 LEP-EKSGTHVLLANTYASAGMWDDVAKVRKLMKDSKVKKEPAMSWVELKDKVHTFIVGD 761

Query: 430 RVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIK 489
           + HP    I+ KL EL   M  AGYVP++E  LH V +  KE LL  HSE+LA+AF LI 
Sbjct: 762 KSHPRARDIYAKLDELGDLMTKAGYVPNVEVDLHDVDKNEKELLLSHHSERLAVAFALIS 821

Query: 490 VPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
            P G PIRV KNLR+C DCH A K+IS I  REII+RD  RFHHF+DG CSC DYW
Sbjct: 822 TPAGAPIRVKKNLRICRDCHAAFKFISDIVSREIIIRDINRFHHFRDGACSCRDYW 877



 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 97/360 (26%), Positives = 170/360 (47%), Gaps = 39/360 (10%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNS--DDVVAAFDFFQRLPI 67
           N +L+ ++K R     A+ +FD+IP P  VS++ +++    N+   D + AF   +   +
Sbjct: 41  NHLLSFYSKCRLP-GSARRVFDEIPDPCHVSWSSLVTAYSNNAMPRDALGAFRSMRSCSV 99

Query: 68  K-------------DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIEC 114
           +               A + T +        +    D+F+A         +A+++ Y   
Sbjct: 100 RCNEFVLPVVLKCAPDAGFGTQLHALAMATGLGG--DIFVA---------NALVAMYGGF 148

Query: 115 GQLDKAVELFKVAPV-KSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNAS 173
           G +D+A  +F  A   ++ V+W  ++S Y+K     N      +K+   M+  G++PN  
Sbjct: 149 GFVDEARMVFDEAGCERNTVSWNGLMSAYVK-----NDRCSHAVKVFGEMVWGGVQPNEF 203

Query: 174 SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI 233
             S V+  C+    L+ G++VH +V ++   KD      L+ MY K GD+  A  +F ++
Sbjct: 204 GFSCVVNACTGSRDLEAGRKVHAMVIRTGYDKDVFTANALVDMYSKLGDIRMAAVVFGKV 263

Query: 234 QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGI 293
              DVV+WNA ISG   HG  + AL L  +MK  G+ P+  T  ++L AC  +G  +LG 
Sbjct: 264 PETDVVSWNAFISGCVLHGHDQHALELLLQMKSSGLVPNVFTLSSILKACAGSGAFNLGR 323

Query: 294 QYFDSMVNDYGIAAKPDHYTC--MVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSAC 351
           Q    MV      A  D+Y    +VD+  + G L +A  +   +P +    ++  L+S C
Sbjct: 324 QIHGFMVK---ANADSDNYIAFGLVDMYAKHGLLDDAKKVFDWIP-QRDLVLWNALISGC 379



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 83/287 (28%), Positives = 134/287 (46%), Gaps = 38/287 (13%)

Query: 98  EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGL 157
           +K+  + +A++  Y + G +  A  +F   P   VV+W A ISG +  G+ +++     L
Sbjct: 234 DKDVFTANALVDMYSKLGDIRMAAVVFGKVPETDVVSWNAFISGCVLHGHDQHA-----L 288

Query: 158 KLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMY 217
           +LL  M   G+ PN  +LSS+L  C+   +  LG+Q+H  + K+    D      L+ MY
Sbjct: 289 ELLLQMKSSGLVPNVFTLSSILKACAGSGAFNLGRQIHGFMVKANADSDNYIAFGLVDMY 348

Query: 218 CKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFV 277
            K G L+DA K+F  I ++D+V WNA+ISG +   +  +AL LF +M+ EG   +  T  
Sbjct: 349 AKHGLLDDAKKVFDWIPQRDLVLWNALISGCSHGAQHAEALSLFCRMRKEGFDVNRTTLA 408

Query: 278 ALLLACN-----------HAGLVDLGIQYFDSMVN------------DYGIAAKPDH--- 311
           A+L +             HA    LG      +VN            +Y       H   
Sbjct: 409 AVLKSTASLEAISDTRQVHALAEKLGFLSDSHVVNGLIDSYWKCDCLNYAYRVFEKHGSY 468

Query: 312 ----YTCMVDLLGRAGKLVEAVDLIKKMPFK---PQPAIFGTLLSAC 351
               +T M+  L +     +A+ L  +M  K   P P +  +LL+AC
Sbjct: 469 DIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLDPDPFVLSSLLNAC 515



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 77/281 (27%), Positives = 129/281 (45%), Gaps = 12/281 (4%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQR-----LPIKDTASWNT 75
           G ++ A  +F K+P+ DVVS+N  +S  +L+  D  A     Q      +P   T S   
Sbjct: 251 GDIRMAAVVFGKVPETDVVSWNAFISGCVLHGHDQHALELLLQMKSSGLVPNVFTLSSIL 310

Query: 76  MISGFVQKKNMAKARDLFLAMPEKNSVSWSA--MISGYIECGQLDKAVELFKVAPVKSVV 133
                    N+ +    F+     +S ++ A  ++  Y + G LD A ++F   P + +V
Sbjct: 311 KACAGSGAFNLGRQIHGFMVKANADSDNYIAFGLVDMYAKHGLLDDAKKVFDWIPQRDLV 370

Query: 134 AWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ 193
            W A+ISG         +   + L L   M   G   N ++L++VL   + L ++   +Q
Sbjct: 371 LWNALISGCS-----HGAQHAEALSLFCRMRKEGFDVNRTTLAAVLKSTASLEAISDTRQ 425

Query: 194 VHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGK 253
           VH L  K     D+  +  LI  Y KC  L  A ++F +    D++ + +MI+  +Q   
Sbjct: 426 VHALAEKLGFLSDSHVVNGLIDSYWKCDCLNYAYRVFEKHGSYDIIAFTSMITALSQCDH 485

Query: 254 GEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ 294
           GE A++LF +M  +G+ PD     +LL AC      + G Q
Sbjct: 486 GEDAIKLFMEMLRKGLDPDPFVLSSLLNACASLSAYEQGKQ 526


>gi|296088012|emb|CBI35295.3| unnamed protein product [Vitis vinifera]
          Length = 645

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 218/492 (44%), Positives = 301/492 (61%), Gaps = 7/492 (1%)

Query: 55  VVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYI-E 113
           +V A   F  +  +D  +WN MI+G         A  L + M E+     S+ I G +  
Sbjct: 160 LVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPT 219

Query: 114 CGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNAS 173
           C  L  A ++F V  V++ V+W+AMI GY     V +   ++ L + RMM   GI P+ +
Sbjct: 220 CQCLLYARKIFDVMGVRNEVSWSAMIGGY-----VASDCMKEALDIFRMMQLSGIDPDLT 274

Query: 174 SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI 233
           ++  VL  CSHL++LQ G   H  +       DT     LI MY KCG +  A ++F  +
Sbjct: 275 TMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNALIDMYSKCGKISFAREVFNRM 334

Query: 234 QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGI 293
            R D+V+WNAMI GY  HG G +AL LF  +   G+KPD ITF+ LL +C+H+GLV  G 
Sbjct: 335 DRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSCSHSGLVMEGR 394

Query: 294 QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRV 353
            +FD+M  D+ I  + +H  CMVD+LGRAG + EA   I+ MPF+P   I+  LLSACR+
Sbjct: 395 LWFDAMSRDFSIVPRMEHCICMVDILGRAGLIDEAHHFIRNMPFEPDVRIWSALLSACRI 454

Query: 354 HKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGY 413
           HK ++L E  +  + +L P  + G +V L+NIY+A  +WDD A IR++ K+  + K+PG 
Sbjct: 455 HKNIELGEEVSKKIQSLGP-ESTGNFVLLSNIYSAAGRWDDAAHIRITQKDWGLKKIPGC 513

Query: 414 SWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQL 473
           SWIE+  +VH F  GD+ H +L  I+ KL+EL   MK  GY  +  F    V EE KEQ+
Sbjct: 514 SWIEINGIVHAFVGGDQSHLQLSQINRKLEELLVEMKRLGYQAECSFVFQDVEEEEKEQI 573

Query: 474 LLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHH 533
           LL+HSEKLAIAFG++ +  G PI V KNLRVCGDCH A K+++ I KREI VRD  RFHH
Sbjct: 574 LLYHSEKLAIAFGILNLKAGRPILVTKNLRVCGDCHTAIKFMTLITKREITVRDANRFHH 633

Query: 534 FKDGTCSCGDYW 545
           FK+GTC+CGD+W
Sbjct: 634 FKNGTCNCGDFW 645



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 65/213 (30%), Positives = 110/213 (51%), Gaps = 9/213 (4%)

Query: 76  MISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISG----YIECGQLDKAVELFKVAPVKS 131
           ++   +Q K++ +A+ +     +  S + S+++      Y+ C Q+  A  LF   P  S
Sbjct: 14  LLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPS 73

Query: 132 VVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLG 191
           V+ W  +I  Y   G  + +     + L   M+ LG+RPN  +   VL  CS L +++ G
Sbjct: 74  VILWNQIIRAYAWNGPFDGA-----IDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDG 128

Query: 192 KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQH 251
            ++H       L  D    T L+  Y KCG L +A +LF  +  +DVV WNAMI+G + +
Sbjct: 129 VEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLY 188

Query: 252 GKGEKALRLFDKMKDEGMKPDSITFVALLLACN 284
           G  + A++L  +M++EG+ P+S T V +L  C 
Sbjct: 189 GLCDDAVQLIMQMQEEGICPNSSTIVGVLPTCQ 221



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 88/183 (48%), Gaps = 2/183 (1%)

Query: 178 VLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKD 237
           +L  C    SL   K++HQ   K+    D++ L  L  +Y  C  +  A +LF EI    
Sbjct: 14  LLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPS 73

Query: 238 VVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFD 297
           V+ WN +I  YA +G  + A+ L+  M   G++P+  T+  +L AC+    ++ G++   
Sbjct: 74  VILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVE-IH 132

Query: 298 SMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRL 357
           S    +G+ +     T +VD   + G LVEA  L   M  +   A +  +++ C ++   
Sbjct: 133 SHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVA-WNAMIAGCSLYGLC 191

Query: 358 DLA 360
           D A
Sbjct: 192 DDA 194



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 68/326 (20%), Positives = 132/326 (40%), Gaps = 59/326 (18%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M+ +  V WN+++AG     G   DA +L  ++ +  +   +  +  +L     ++ A  
Sbjct: 170 MSHRDVVAWNAMIAG-CSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTCQCLLYARK 228

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM------PE---------------- 98
            F  + +++  SW+ MI G+V    M +A D+F  M      P+                
Sbjct: 229 IFDVMGVRNEVSWSAMIGGYVASDCMKEALDIFRMMQLSGIDPDLTTMLGVLPACSHLAA 288

Query: 99  -----------------KNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISG 141
                             +++  +A+I  Y +CG++  A E+F       +V+W AMI G
Sbjct: 289 LQHGFCSHGYLIVRGFATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIG 348

Query: 142 YMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKS 201
           Y   G        + L L   ++ LG++P+  +   +L  CSH   +  G+     ++  
Sbjct: 349 YGIHGL-----GMEALGLFHDLLALGLKPDDITFICLLSSCSHSGLVMEGR-----LWFD 398

Query: 202 PLCKDTTALTPLISMYC------KCGDLEDACKLFLEIQ-RKDVVTWNAMISGYAQHGKG 254
            + +D + +  +    C      + G +++A      +    DV  W+A++S    H   
Sbjct: 399 AMSRDFSIVPRMEHCICMVDILGRAGLIDEAHHFIRNMPFEPDVRIWSALLSACRIHKNI 458

Query: 255 EKALRLFDKMKDEGMKPDSITFVALL 280
           E    +  K++  G  P+S     LL
Sbjct: 459 ELGEEVSKKIQSLG--PESTGNFVLL 482


>gi|356515320|ref|XP_003526349.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 816

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 236/621 (38%), Positives = 343/621 (55%), Gaps = 83/621 (13%)

Query: 1   MNVKTTVNWNSVLAGFAKQ---RGKLKDAQELFDKIPQPDVVS----------------- 40
           M  +  V+WN+V+AG+A+    R  ++   ++ +   +PD ++                 
Sbjct: 203 MPQRDLVSWNTVVAGYAQNGFARRAVQVVLQMQEAGQKPDSITLVSVLPAVADLKALRIG 262

Query: 41  -------------YNIMLSCILLNS----DDVVAAFDFFQRLPIKDTASWNTMISGFVQK 83
                        Y + ++  +L++      V +A   F+ +  ++  SWNTMI G+ Q 
Sbjct: 263 RSIHGYAFRAGFEYMVNVATAMLDTYFKCGSVRSARLVFKGMSSRNVVSWNTMIDGYAQN 322

Query: 84  KNMAKARDLFLAM----PEKNSVSW----------------------------------- 104
               +A   FL M     E  +VS                                    
Sbjct: 323 GESEEAFATFLKMLDEGVEPTNVSMMGALHACANLGDLERGRYVHRLLDEKKIGFDVSVM 382

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI 164
           +++IS Y +C ++D A  +F     K+VV W AMI      GY +N    + L L   M 
Sbjct: 383 NSLISMYSKCKRVDIAASVFGNLKHKTVVTWNAMI-----LGYAQNGCVNEALNLFCEMQ 437

Query: 165 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 224
              I+P++ +L SV+   + LS  +  K +H L  ++ + K+    T LI  + KCG ++
Sbjct: 438 SHDIKPDSFTLVSVITALADLSVTRQAKWIHGLAIRTLMDKNVFVCTALIDTHAKCGAIQ 497

Query: 225 DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 284
            A KLF  +Q + V+TWNAMI GY  +G G +AL LF++M++  +KP+ ITF++++ AC+
Sbjct: 498 TARKLFDLMQERHVITWNAMIDGYGTNGHGREALDLFNEMQNGSVKPNEITFLSVIAACS 557

Query: 285 HAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIF 344
           H+GLV+ G+ YF+SM  +YG+    DHY  MVDLLGRAG+L +A   I+ MP KP   + 
Sbjct: 558 HSGLVEEGMYYFESMKENYGLEPTMDHYGAMVDLLGRAGRLDDAWKFIQDMPVKPGITVL 617

Query: 345 GTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKE 404
           G +L ACR+HK ++L E  A  LF+L+P +  G +V LAN+YA+   WD VAR+R +M++
Sbjct: 618 GAMLGACRIHKNVELGEKTADELFDLDP-DDGGYHVLLANMYASASMWDKVARVRTAMEK 676

Query: 405 NNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHA 464
             + K PG S +E+   VH F SG   HP+   I+  L+ L   MK AGYVPD   ++H 
Sbjct: 677 KGIQKTPGCSLVELRNEVHTFYSGSTNHPQSKRIYAYLETLGDEMKAAGYVPDTN-SIHD 735

Query: 465 VGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREII 524
           V E+VKEQLL  HSE+LAIAFGL+    GT I + KNLRVCGDCH ATKYIS +  REII
Sbjct: 736 VEEDVKEQLLSSHSERLAIAFGLLNTRHGTAIHIRKNLRVCGDCHEATKYISLVTGREII 795

Query: 525 VRDTTRFHHFKDGTCSCGDYW 545
           VRD  RFHHFK+G CSCGDYW
Sbjct: 796 VRDLRRFHHFKNGICSCGDYW 816



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 86/364 (23%), Positives = 182/364 (50%), Gaps = 26/364 (7%)

Query: 23  LKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRL------PIKDTASWNTM 76
           + +A  +F+ +     V Y+ ML     NS  +  A  F++R+      P+    ++   
Sbjct: 92  ITEAARVFEPVEHKLDVLYHTMLKGYAKNST-LRDAVRFYERMRCDEVMPVVYDFTYLLQ 150

Query: 77  ISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSV 132
           +SG  +  ++ + R++   +     + N  + +A+++ Y +C Q++ A ++F+  P + +
Sbjct: 151 LSG--ENLDLRRGREIHGMVITNGFQSNLFAMTAVVNLYAKCRQIEDAYKMFERMPQRDL 208

Query: 133 VAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGK 192
           V+W  +++GY      +N +A   ++++  M   G +P++ +L SVL   + L +L++G+
Sbjct: 209 VSWNTVVAGY-----AQNGFARRAVQVVLQMQEAGQKPDSITLVSVLPAVADLKALRIGR 263

Query: 193 QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHG 252
            +H   F++         T ++  Y KCG +  A  +F  +  ++VV+WN MI GYAQ+G
Sbjct: 264 SIHGYAFRAGFEYMVNVATAMLDTYFKCGSVRSARLVFKGMSSRNVVSWNTMIDGYAQNG 323

Query: 253 KGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY 312
           + E+A   F KM DEG++P +++ +  L AC + G ++ G +Y   ++++  I       
Sbjct: 324 ESEEAFATFLKMLDEGVEPTNVSMMGALHACANLGDLERG-RYVHRLLDEKKIGFDVSVM 382

Query: 313 TCMVDLLGRAGKLVEAVDLIKKMPFKP----QPAIFGTLLSACRVHKRLDLAEFAAMNLF 368
             ++ +  +  ++  A  +   +  K        I G   + C V++ L+L  F  M   
Sbjct: 383 NSLISMYSKCKRVDIAASVFGNLKHKTVVTWNAMILGYAQNGC-VNEALNL--FCEMQSH 439

Query: 369 NLNP 372
           ++ P
Sbjct: 440 DIKP 443



 Score = 55.5 bits (132), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 79/162 (48%), Gaps = 5/162 (3%)

Query: 176 SSVLLG-CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ 234
           S++LL  C+ L  L    Q+  L+ K+    +    T LIS++CK   + +A ++F  ++
Sbjct: 47  SAILLELCTSLKELH---QILPLIIKNGFYNEHLFQTKLISLFCKFNSITEAARVFEPVE 103

Query: 235 RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ 294
            K  V ++ M+ GYA++     A+R +++M+ + + P    F  LL        +  G +
Sbjct: 104 HKLDVLYHTMLKGYAKNSTLRDAVRFYERMRCDEVMPVVYDFTYLLQLSGENLDLRRGRE 163

Query: 295 YFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 336
               MV   G  +     T +V+L  +  ++ +A  + ++MP
Sbjct: 164 -IHGMVITNGFQSNLFAMTAVVNLYAKCRQIEDAYKMFERMP 204


>gi|357465899|ref|XP_003603234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492282|gb|AES73485.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 973

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 217/539 (40%), Positives = 313/539 (58%), Gaps = 27/539 (5%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           GK+++A+ LF      D+ S+N M+    + SD+   A   F  +  +   +     +  
Sbjct: 448 GKMEEAELLFHNQDGFDLASWNAMMHGFTV-SDNYREALRLFSLMHERGEKADQITFA-- 504

Query: 81  VQKKNMAKARDLFLAMPEKNSVS--------------WSAMISGYIECGQLDKAVELFKV 126
               N AKA    + + +   +                S ++  Y++CG++  A ++F  
Sbjct: 505 ----NAAKAAGCLVRLQQGKQIHAVVIKMRFHYDLFVISGILDMYLKCGEMKSARKVFNQ 560

Query: 127 APVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLS 186
            P    VAWT +IS     G VEN   E  L     M   G++P+  + ++++  CS L+
Sbjct: 561 IPSPDDVAWTTVIS-----GCVENGEEEQALFTYHQMRLAGVQPDEYTFATLVKACSLLT 615

Query: 187 SLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMIS 246
           +L+ GKQ+H  + K     D   +T L+ MY KCG++EDA  LF  +  + V  WNAMI 
Sbjct: 616 ALEQGKQIHANIMKLNCAFDPFVMTSLVDMYAKCGNIEDAYGLFRRMNTRSVALWNAMIV 675

Query: 247 GYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIA 306
           G AQHG  E+AL  F++MK  G+ PD +TF+ +L AC+H+GL     + FDSM   YG+ 
Sbjct: 676 GLAQHGNAEEALNFFNEMKSRGVTPDRVTFIGVLSACSHSGLTSDAYKNFDSMQKTYGVE 735

Query: 307 AKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMN 366
            + +HY+C+VD L RAG + EA  ++  MPF+    ++ TLL+ACRV    +  E  A  
Sbjct: 736 PEIEHYSCLVDALSRAGHIQEAEKVVSSMPFEASATMYRTLLNACRVQGDKETGERVAEK 795

Query: 367 LFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFR 426
           LF ++P+++A  YV L+NIYAA  +W++    R  MK  NV K PG+SWI++   VH F 
Sbjct: 796 LFTMDPSDSAA-YVLLSNIYAAANQWENAVSARNMMKRVNVKKEPGFSWIDMKNKVHLFV 854

Query: 427 SGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFG 486
           +GDR H E   I+ K++ + KR+K  GYVPD EFAL  + EE KE  L +HSEKLAIA+G
Sbjct: 855 AGDRSHEETDLIYNKVEYVMKRIKEEGYVPDTEFALVDIEEEDKESALSYHSEKLAIAYG 914

Query: 487 LIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           L+K P  T +RV KNLRVCGDCH A KYIS + +REI++RD  RFHHF+ G CSCGDYW
Sbjct: 915 LMKTPPSTTLRVIKNLRVCGDCHNAIKYISNVFQREIVLRDANRFHHFRSGICSCGDYW 973



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 72/265 (27%), Positives = 135/265 (50%), Gaps = 11/265 (4%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI 164
           +A+I  Y + G++++A  LF       + +W AM+ G+     V +++ E  L+L  +M 
Sbjct: 438 TALIDVYSKGGKMEEAELLFHNQDGFDLASWNAMMHGFT----VSDNYRE-ALRLFSLMH 492

Query: 165 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 224
             G + +  + ++       L  LQ GKQ+H +V K     D   ++ ++ MY KCG+++
Sbjct: 493 ERGEKADQITFANAAKAAGCLVRLQQGKQIHAVVIKMRFHYDLFVISGILDMYLKCGEMK 552

Query: 225 DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 284
            A K+F +I   D V W  +ISG  ++G+ E+AL  + +M+  G++PD  TF  L+ AC+
Sbjct: 553 SARKVFNQIPSPDDVAWTTVISGCVENGEEEQALFTYHQMRLAGVQPDEYTFATLVKACS 612

Query: 285 HAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIF 344
               ++ G Q   +++     A  P   T +VD+  + G + +A  L ++M  +   A++
Sbjct: 613 LLTALEQGKQIHANIMK-LNCAFDPFVMTSLVDMYAKCGNIEDAYGLFRRMNTR-SVALW 670

Query: 345 GTLLSACRVHKRLDLAEFAAMNLFN 369
             ++     H   +     A+N FN
Sbjct: 671 NAMIVGLAQHGNAE----EALNFFN 691



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 105/409 (25%), Positives = 179/409 (43%), Gaps = 70/409 (17%)

Query: 3   VKTTVNWNSVLAG-----FAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCI--LLNSDDV 55
           VK  + W+  +AG     +AK + ++++A+ LFD++P  DVV +N+M+     +   D+V
Sbjct: 149 VKIGLQWDVFVAGALVNIYAKFQ-RIREARVLFDRMPVRDVVLWNVMMKAYVEMGAGDEV 207

Query: 56  VAAFDFFQRLPIK-DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIEC 114
           +  F  F R  ++ D  S  T++ G V KK + + R+L               +  Y   
Sbjct: 208 LGLFSAFHRSGLRPDCVSVRTILMG-VGKKTVFE-REL-------------EQVRAY--- 249

Query: 115 GQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASS 174
                A +LF       V  W   +S Y++ G     W  + +   R MI   +  ++ +
Sbjct: 250 -----ATKLFVCDDDSDVTVWNKTLSSYLQAG---EGW--EAVDCFRDMIKSRVPCDSLT 299

Query: 175 LSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ 234
              +L   + L+ L+LGKQ+H  V +    +  +     I+MY K G +  A ++F +++
Sbjct: 300 YIVILSVVASLNHLELGKQIHGAVVRFGWDQFVSVANSAINMYVKAGSVNYARRMFGQMK 359

Query: 235 RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN---------- 284
             D+++WN +ISG A+ G  E +LRLF  +   G+ PD  T  ++L AC+          
Sbjct: 360 EVDLISWNTVISGCARSGLEECSLRLFIDLLRSGLLPDQFTITSVLRACSSLEESYCVGR 419

Query: 285 --HAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEA---------VDLIK 333
             H   +  GI   DS V+           T ++D+  + GK+ EA          DL  
Sbjct: 420 QVHTCALKAGI-VLDSFVS-----------TALIDVYSKGGKMEEAELLFHNQDGFDLAS 467

Query: 334 KMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQL 382
                    +      A R+   +      A  +   N A AAGC V+L
Sbjct: 468 WNAMMHGFTVSDNYREALRLFSLMHERGEKADQITFANAAKAAGCLVRL 516



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 76/306 (24%), Positives = 131/306 (42%), Gaps = 48/306 (15%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPD--VVSYNIMLSCI-----LLNSDDVVAAFDFF 62
           N+++  +AK  G L  A++LFD  PQ D  +V+YN +L+       L + +    AF  F
Sbjct: 52  NNLITMYAKC-GSLFSARKLFDITPQSDRDLVTYNAILAAYAHTGELHDVEKTHEAFHIF 110

Query: 63  QRLPIKDTASWNTMISGFVQK---KNMAKARDLFLAMPEKNSVSWSAMISG-----YIEC 114
           + L      +    +S   +         A +       K  + W   ++G     Y + 
Sbjct: 111 RLLRQSVMLTTRHTLSPLFKLCLLYGSPSASEALQGYAVKIGLQWDVFVAGALVNIYAKF 170

Query: 115 GQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASS 174
            ++ +A  LF   PV+ VV W  M+  Y++ G       ++ L L       G+RP+  S
Sbjct: 171 QRIREARVLFDRMPVRDVVLWNVMMKAYVEMGA-----GDEVLGLFSAFHRSGLRPDCVS 225

Query: 175 LSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ 234
           + ++L+G        +GK+    VF+  L +        +  Y        A KLF+   
Sbjct: 226 VRTILMG--------VGKKT---VFERELEQ--------VRAY--------ATKLFVCDD 258

Query: 235 RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ 294
             DV  WN  +S Y Q G+G +A+  F  M    +  DS+T++ +L        ++LG Q
Sbjct: 259 DSDVTVWNKTLSSYLQAGEGWEAVDCFRDMIKSRVPCDSLTYIVILSVVASLNHLELGKQ 318

Query: 295 YFDSMV 300
              ++V
Sbjct: 319 IHGAVV 324



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 57/238 (23%), Positives = 102/238 (42%), Gaps = 12/238 (5%)

Query: 107 MISGYIECGQLDKAVELFKVAPV--KSVVAWTAMISGYMKFGYVEN----SWAEDGLKLL 160
           +I+ Y +CG L  A +LF + P   + +V + A+++ Y   G + +      A    +LL
Sbjct: 54  LITMYAKCGSLFSARKLFDITPQSDRDLVTYNAILAAYAHTGELHDVEKTHEAFHIFRLL 113

Query: 161 RMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKC 220
           R  + L  R    +LS +   C    S    + +     K  L  D      L+++Y K 
Sbjct: 114 RQSVMLTTR---HTLSPLFKLCLLYGSPSASEALQGYAVKIGLQWDVFVAGALVNIYAKF 170

Query: 221 GDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 280
             + +A  LF  +  +DVV WN M+  Y + G G++ L LF      G++PD ++   +L
Sbjct: 171 QRIREARVLFDRMPVRDVVLWNVMMKAYVEMGAGDEVLGLFSAFHRSGLRPDCVSVRTIL 230

Query: 281 LACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLG---RAGKLVEAVDLIKKM 335
           +      + +  ++   +      +       T     L    +AG+  EAVD  + M
Sbjct: 231 MGVGKKTVFERELEQVRAYATKLFVCDDDSDVTVWNKTLSSYLQAGEGWEAVDCFRDM 288



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 74/172 (43%), Gaps = 31/172 (18%)

Query: 186 SSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF--LEIQRKDVVTWNA 243
           S L LGK+ H ++  S L  D      LI+MY KCG L  A KLF       +D+VT+NA
Sbjct: 27  SDLILGKRTHAVIVTSGLNPDRYVTNNLITMYAKCGSLFSARKLFDITPQSDRDLVTYNA 86

Query: 244 MISGYAQHG------KGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG---------- 287
           +++ YA  G      K  +A  +F  ++   M     T   L   C   G          
Sbjct: 87  ILAAYAHTGELHDVEKTHEAFHIFRLLRQSVMLTTRHTLSPLFKLCLLYGSPSASEALQG 146

Query: 288 -LVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 338
             V +G+Q+      D  +A        +V++  +  ++ EA  L  +MP +
Sbjct: 147 YAVKIGLQW------DVFVAG------ALVNIYAKFQRIREARVLFDRMPVR 186


>gi|347954538|gb|AEP33769.1| organelle transcript processing 82, partial [Olimarabidopsis
           pumila]
          Length = 710

 Score =  417 bits (1071), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 224/568 (39%), Positives = 327/568 (57%), Gaps = 48/568 (8%)

Query: 19  QRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMIS 78
           Q G+L+DAQ++ DK    DVVSY  +++    +   + +A   F  +P+KD  SWN  IS
Sbjct: 150 QNGRLEDAQKVXDKSSHRDVVSYTALITG-YASRGXIESAHKMFDEIPVKDVVSWNAXIS 208

Query: 79  GFVQKKNMAKARDLFLAM------PEKNSV--------------------SW-------- 104
           G+ +  N  +A +LF  M      P+++++                    SW        
Sbjct: 209 GYAETGNYKEALELFKKMMKTNVRPDESTMVTVLSACAQSGSIELGRQVHSWINDHGFGX 268

Query: 105 -----SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKL 159
                +A+I  Y +CG+L+ A  LF+    K V++W  +I GY      +     + L L
Sbjct: 269 NLKIVNALIDLYSKCGELETACGLFQGLSNKDVISWNTLIGGYTHMNLYK-----EALLL 323

Query: 160 LRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK--SPLCKDTTALTPLISMY 217
            + M+  G +PN  ++ S+L  C+HL ++ +G+ +H  + K    +   ++  T LI MY
Sbjct: 324 FQDMLRSGEKPNDVTMLSILSACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMY 383

Query: 218 CKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFV 277
            KCGD+E A ++F  +  + + +WNAMI G+A HG+   A  +F +M+  G++PD ITFV
Sbjct: 384 AKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFV 443

Query: 278 ALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPF 337
            LL AC+H+G++DLG   F SM  DY +  K +HY CM+DL G +G   EA  +I  M  
Sbjct: 444 GLLSACSHSGMLDLGRHIFRSMTRDYKLMPKLEHYGCMIDLXGHSGLFKEAEKMINTMEM 503

Query: 338 KPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVAR 397
           +P   I+ +LL AC++H  ++L E  A NL  + P N  G YV L+NIYA  ++W++VA+
Sbjct: 504 EPDGVIWCSLLKACKMHGNVELGESYAQNLIKIEPENP-GSYVLLSNIYATAERWNEVAK 562

Query: 398 IRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPD 457
            R  + +  + K+PG S IE+ +VVHEF  GD+ HP    I+  L+E+E  ++ AG+VPD
Sbjct: 563 TRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEEAGFVPD 622

Query: 458 LEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISA 517
               L  + EE KE  L  HSEKLAIAFGLI    GT + + KNLRVC +CH ATK IS 
Sbjct: 623 TSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISK 682

Query: 518 IEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           I KREII RD TRFHHF+DG CSC DYW
Sbjct: 683 IYKREIIARDRTRFHHFRDGECSCNDYW 710



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 122/439 (27%), Positives = 191/439 (43%), Gaps = 92/439 (20%)

Query: 26  AQELFDKIPQPDVVSYNIMLSCILLNSDDVVA---------------------------- 57
           A  +FD I +P ++ +N M     L+SD V A                            
Sbjct: 56  AISVFDTIQEPXLLIWNTMFRGHALSSDPVSALKLYVCMVSLGLLPNSYTFPFLLKSCAK 115

Query: 58  --AFDFFQRLPIK--------DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAM 107
             AF   Q+L  +        D     ++IS +VQ   +  A+ +      ++ VS++A+
Sbjct: 116 SXAFKEGQQLHGQVLKFGFDLDLYIHTSLISMYVQNGRLEDAQKVXDKSSHRDVVSYTAL 175

Query: 108 ISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLG 167
           I+GY   G ++ A ++F   PVK VV+W A ISGY + G       ++ L+L + M+   
Sbjct: 176 ITGYASRGXIESAHKMFDEIPVKDVVSWNAXISGYAETGNY-----KEALELFKKMMKTN 230

Query: 168 IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC 227
           +RP+ S++ +VL  C+   S++LG+QVH  +       +   +  LI +Y KCG+LE AC
Sbjct: 231 VRPDESTMVTVLSACAQSGSIELGRQVHSWINDHGFGXNLKIVNALIDLYSKCGELETAC 290

Query: 228 KLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG 287
            LF  +  KDV++WN +I GY      ++AL LF  M   G KP+ +T +++L AC H G
Sbjct: 291 GLFQGLSNKDVISWNTLIGGYTHMNLYKEALLLFQDMLRSGEKPNDVTMLSILSACAHLG 350

Query: 288 LVDLG-------------------------------------IQYFDSMVNDYGIAAKPD 310
            +D+G                                      Q FDSM+N         
Sbjct: 351 AIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAQQVFDSMLN-----RSLS 405

Query: 311 HYTCMV---DLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAE--FAAM 365
            +  M+    + GRA    +    ++K   +P    F  LLSAC     LDL    F +M
Sbjct: 406 SWNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRHIFRSM 465

Query: 366 NL-FNLNPA-NAAGCYVQL 382
              + L P     GC + L
Sbjct: 466 TRDYKLMPKLEHYGCMIDL 484



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 73/253 (28%), Positives = 113/253 (44%), Gaps = 37/253 (14%)

Query: 117 LDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLS 176
           L  A+ +F       ++ W  M  G+       +S     LKL   M+ LG+ PN+ +  
Sbjct: 53  LPYAISVFDTIQEPXLLIWNTMFRGH-----ALSSDPVSALKLYVCMVSLGLLPNSYTFP 107

Query: 177 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK 236
            +L  C+   + + G+Q+H  V K     D    T LISMY + G LEDA K+  +   +
Sbjct: 108 FLLKSCAKSXAFKEGQQLHGQVLKFGFDLDLYIHTSLISMYVQNGRLEDAQKVXDKSSHR 167

Query: 237 DVVTWNAM-------------------------------ISGYAQHGKGEKALRLFDKMK 265
           DVV++ A+                               ISGYA+ G  ++AL LF KM 
Sbjct: 168 DVVSYTALITGYASRGXIESAHKMFDEIPVKDVVSWNAXISGYAETGNYKEALELFKKMM 227

Query: 266 DEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKL 325
              ++PD  T V +L AC  +G ++LG Q   S +ND+G          ++DL  + G+L
Sbjct: 228 KTNVRPDESTMVTVLSACAQSGSIELGRQ-VHSWINDHGFGXNLKIVNALIDLYSKCGEL 286

Query: 326 VEAVDLIKKMPFK 338
             A  L + +  K
Sbjct: 287 ETACGLFQGLSNK 299


>gi|224116778|ref|XP_002331875.1| predicted protein [Populus trichocarpa]
 gi|222875393|gb|EEF12524.1| predicted protein [Populus trichocarpa]
          Length = 675

 Score =  417 bits (1071), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 226/555 (40%), Positives = 325/555 (58%), Gaps = 20/555 (3%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M+VK    WN+++ G+  + G++++   LF+++P  DV+S+  M+  + LN     A F 
Sbjct: 131 MHVKDVAAWNAMVHGYF-ENGRVEEGVRLFEEMPVRDVISWTSMIGGLDLNGKSEEALFV 189

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKAR----------DLFLAMPEKNSVSWSAMISG 110
           F + L      +W+T         N  +             L     E  SVS   +I+ 
Sbjct: 190 FKKMLRSGVEPTWSTFACVLSACANAVEFNLGVQVHGHVVKLGCFFHEFISVS---LITF 246

Query: 111 YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRP 170
           Y  C +++ A ++F     K+VV WTA+++ Y     V N+  +D L++   M  +G  P
Sbjct: 247 YANCMKIEHAHKIFNETLTKNVVKWTALLTAY-----VWNNKHQDALRVFGDMTKMGALP 301

Query: 171 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 230
           N S+ S  L  C  L +L  GK++H +  K  L  D      L+ MY +CG++  A  +F
Sbjct: 302 NQSTFSITLKACCGLEALDKGKEIHTMAIKLGLETDVFVGNSLVVMYTECGNVNSAVAVF 361

Query: 231 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVD 290
             I  KD+V+WN++I G AQHG G  AL  F++M   G+ P+ ITF  LL AC+ +G++ 
Sbjct: 362 RNINEKDIVSWNSIIVGSAQHGFGLWALIFFNQMIRRGVDPNEITFTGLLSACSRSGMLL 421

Query: 291 LGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSA 350
            G  +F+ +        +P HY CMVD+LGR GKL EA +L++ MP K    I+  LLSA
Sbjct: 422 KGRCFFEYISRYKSNVLRPQHYACMVDILGRCGKLDEAEELVRYMPVKANSMIWLALLSA 481

Query: 351 CRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKM 410
           CRVH  L++AE AA ++ +L P N +  YV L+NIYA+  +W DV+R+R+ MK+  +VK 
Sbjct: 482 CRVHSNLEVAERAAKHILDLEP-NCSSAYVLLSNIYASAGRWADVSRMRVKMKQGGLVKQ 540

Query: 411 PGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVK 470
           PG SW+ +    HEF S DR HP    I+EKL  L K++K  GYVPD +FALH V +E K
Sbjct: 541 PGSSWVVLRGKKHEFLSADRSHPLSERIYEKLDWLGKKLKEFGYVPDQKFALHDVEDEQK 600

Query: 471 EQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTR 530
           E++L FHSE+LAIAFGL+    G+ I V KNLRVCGDCH   K +S I  R+I+VRD+ R
Sbjct: 601 EEMLSFHSERLAIAFGLVSTVEGSTITVMKNLRVCGDCHSVIKLMSKIVGRKIVVRDSGR 660

Query: 531 FHHFKDGTCSCGDYW 545
           FHHFK+G CSC DYW
Sbjct: 661 FHHFKNGICSCSDYW 675



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 102/304 (33%), Positives = 153/304 (50%), Gaps = 28/304 (9%)

Query: 6   TVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRL 65
           T+++ + LA   K + +L  A+ +FDKIP P++  Y  M++    N D +  A   F R+
Sbjct: 12  TLSYTTSLANHLKNQ-RLDQARLIFDKIPSPNLHLYTKMIAGYTRN-DRLCDALKLFDRM 69

Query: 66  PIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFK 125
            ++D  SWN+MI G +   N+  A  LF  MPEKN +SW+ M++GY++ G+++ A  LF 
Sbjct: 70  SVRDVVSWNSMIKGCLDCGNLGMATRLFDEMPEKNVISWTTMVNGYLKFGRVELAQRLFL 129

Query: 126 VAPVKSVVAWTAMISGYMKFGYVEN--------------SW------------AEDGLKL 159
              VK V AW AM+ GY + G VE               SW            +E+ L +
Sbjct: 130 DMHVKDVAAWNAMVHGYFENGRVEEGVRLFEEMPVRDVISWTSMIGGLDLNGKSEEALFV 189

Query: 160 LRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCK 219
            + M+  G+ P  S+ + VL  C++     LG QVH  V K            LI+ Y  
Sbjct: 190 FKKMLRSGVEPTWSTFACVLSACANAVEFNLGVQVHGHVVKLGCFFHEFISVSLITFYAN 249

Query: 220 CGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVAL 279
           C  +E A K+F E   K+VV W A+++ Y  + K + ALR+F  M   G  P+  TF   
Sbjct: 250 CMKIEHAHKIFNETLTKNVVKWTALLTAYVWNNKHQDALRVFGDMTKMGALPNQSTFSIT 309

Query: 280 LLAC 283
           L AC
Sbjct: 310 LKAC 313


>gi|224131918|ref|XP_002328140.1| predicted protein [Populus trichocarpa]
 gi|222837655|gb|EEE76020.1| predicted protein [Populus trichocarpa]
          Length = 534

 Score =  417 bits (1071), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 222/544 (40%), Positives = 329/544 (60%), Gaps = 22/544 (4%)

Query: 11  SVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIML---SCILLNSDDVVAAFDFFQRLPI 67
           ++L     + G L DAQ++FDK+P  +VVS+  M+   S   LN      A +F   L +
Sbjct: 4   NILINMYVKFGLLHDAQDVFDKMPDRNVVSWTTMISAYSAAKLND----KALEFLV-LML 58

Query: 68  KDTASWNTMISGFVQK--KNMAKARDLFLAMP----EKNSVSWSAMISGYIECGQLDKAV 121
           ++    N      V +    +   R L   +     + +    SA+I  Y   G+L+ A+
Sbjct: 59  REGVRPNMFTYSSVLRACDGLFNLRQLHCCIIKIGLDSDVFVRSALIDVYSRWGELENAL 118

Query: 122 ELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLG 181
            +F       +V W+++I+G+      +NS  ++ L+L + M   G     ++L+SVL  
Sbjct: 119 RVFDEMVTGDLVVWSSIIAGF-----AQNSDGDEALRLFKRMKRAGFLAQQTTLTSVLRA 173

Query: 182 CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTW 241
           C+ L+ L+LG+QVH  V K    +D      L+ MYCKCG LEDA  +F+ +  KDV++W
Sbjct: 174 CTGLALLELGRQVHVHVLKYD--QDLILNNALLDMYCKCGSLEDANAVFVRMVEKDVISW 231

Query: 242 NAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN 301
           + MI+G AQ+G  ++AL+LF+ MK  G+KP+ +T V +L AC+HAGLV+ G+ YF SM  
Sbjct: 232 STMIAGLAQNGYSKEALKLFESMKVLGIKPNYVTIVGVLFACSHAGLVEEGLYYFHSMKE 291

Query: 302 DYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAE 361
            +GI    +HY CM+DLLGRAG+L EAVDLI +M  +P    +  LL+ACRVH+ +D+A 
Sbjct: 292 LFGIDPGREHYGCMIDLLGRAGRLSEAVDLINEMECEPDAVTWRALLNACRVHRNVDVAI 351

Query: 362 FAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTV 421
            AA  +  L+P +A G YV L+NIYA  ++W+DVA +R +M    + K PG SWIEV   
Sbjct: 352 HAAKQILRLDPQDA-GTYVLLSNIYANTQRWNDVAEVRRTMTNRGIKKEPGCSWIEVSKQ 410

Query: 422 VHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKL 481
           +H F  GDR HP++  I+ +L +L  ++   GYVPD  F L  +  E  +  L +HSEKL
Sbjct: 411 IHAFILGDRSHPQIREINIQLNQLIYKLMGVGYVPDTNFVLQDLEGEQMQDSLRYHSEKL 470

Query: 482 AIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSC 541
           AI FGL+ +P G  IR+ KNLR+CGDCH  TK ++ +E+R I++RD  R+HHF+DG CSC
Sbjct: 471 AIVFGLMSLPRGQTIRIRKNLRICGDCHLFTKLLAKMEQRIIVIRDPVRYHHFQDGLCSC 530

Query: 542 GDYW 545
           GD+W
Sbjct: 531 GDFW 534



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 58/266 (21%), Positives = 113/266 (42%), Gaps = 58/266 (21%)

Query: 7   VNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP 66
           V W+S++AGFA Q     +A  LF ++ +   ++    L+ + L +   +A  +  +++ 
Sbjct: 130 VVWSSIIAGFA-QNSDGDEALRLFKRMKRAGFLAQQTTLTSV-LRACTGLALLELGRQVH 187

Query: 67  I------KDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
           +      +D    N ++  + +  ++  A  +F+ M EK+ +SWS MI+G          
Sbjct: 188 VHVLKYDQDLILNNALLDMYCKCGSLEDANAVFVRMVEKDVISWSTMIAG---------- 237

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLL 180
                                       +N ++++ LKL   M  LGI+PN  ++  VL 
Sbjct: 238 --------------------------LAQNGYSKEALKLFESMKVLGIKPNYVTIVGVLF 271

Query: 181 GCSHLSSLQLGKQVHQLVFKSPLCKDTTALTP-------LISMYCKCGDLEDACKLFLEI 233
            CSH   ++ G      ++     K+   + P       +I +  + G L +A  L  E+
Sbjct: 272 ACSHAGLVEEG------LYYFHSMKELFGIDPGREHYGCMIDLLGRAGRLSEAVDLINEM 325

Query: 234 Q-RKDVVTWNAMISGYAQHGKGEKAL 258
           +   D VTW A+++    H   + A+
Sbjct: 326 ECEPDAVTWRALLNACRVHRNVDVAI 351


>gi|225439588|ref|XP_002265522.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Vitis vinifera]
          Length = 686

 Score =  417 bits (1071), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 227/533 (42%), Positives = 314/533 (58%), Gaps = 15/533 (2%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP----IKDTASWNTM 76
           G L+DA ++FD IP  +VVS+  ++S   +       A D F+RL       D+ +   +
Sbjct: 161 GYLEDAHKVFDDIPDKNVVSWTAIISG-YIGVGKFREAIDMFRRLLEMNLAPDSFTIVRV 219

Query: 77  ISGFVQKKNMAKARDLFLAMPE----KNSVSWSAMISGYIECGQLDKAVELFKVAPVKSV 132
           +S   Q  ++     +   + E    +N    ++++  Y +CG ++KA  +F   P K +
Sbjct: 220 LSACTQLGDLNSGEWIHKCIMEMGMVRNVFVGTSLVDMYAKCGNMEKARSVFDGMPEKDI 279

Query: 133 VAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGK 192
           V+W AMI GY       N   ++ + L   M    ++P+  ++  VL  C+ L +L+LG+
Sbjct: 280 VSWGAMIQGY-----ALNGLPKEAIDLFLQMQRENVKPDCYTVVGVLSACARLGALELGE 334

Query: 193 QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHG 252
            V  LV ++    +    T LI +Y KCG +  A ++F  ++ KD V WNA+ISG A +G
Sbjct: 335 WVSGLVDRNEFLYNPVLGTALIDLYAKCGSMSRAWEVFKGMKEKDRVVWNAIISGLAMNG 394

Query: 253 KGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY 312
             + +  LF +++  G+KPD  TF+ LL  C HAGLVD G +YF+SM   + +    +HY
Sbjct: 395 YVKISFGLFGQVEKLGIKPDGNTFIGLLCGCTHAGLVDEGRRYFNSMYRFFSLTPSIEHY 454

Query: 313 TCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNP 372
            CMVDLLGRAG L EA  LI+ MP +    ++G LL ACR+H+   LAE A   L  L P
Sbjct: 455 GCMVDLLGRAGLLDEAHQLIRNMPMEANAIVWGALLGACRIHRDTQLAELALKQLIELEP 514

Query: 373 ANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVH 432
            N+ G YV L+NIY+A  KWD+ A++RLSM E  + K PG SWIEV  +VHEF  GD+ H
Sbjct: 515 WNS-GNYVLLSNIYSANLKWDEAAKVRLSMNEKRIQKPPGCSWIEVDGIVHEFLVGDKYH 573

Query: 433 PELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPL 492
           P    I+ KL EL K+MK+AGYVP  +F L  + EE KE  L  HSEKLAIAFGLI    
Sbjct: 574 PLSEKIYAKLDELTKKMKVAGYVPTTDFVLFDIEEEEKEHFLGCHSEKLAIAFGLISATP 633

Query: 493 GTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
              IRV KNLRVCGDCH A K IS+I  REI VRD  RFH F++G+CSC DYW
Sbjct: 634 TAVIRVVKNLRVCGDCHMAIKLISSITGREITVRDNNRFHCFREGSCSCNDYW 686



 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 95/327 (29%), Positives = 167/327 (51%), Gaps = 29/327 (8%)

Query: 29  LFDKIPQPDVVSYNIMLSCILLNS--DDVVAAFDFFQR---LPIKDTASWNTMISGFVQK 83
           LF +I QP++  +N M+  ++ N   DD +  +   +    LP       N     FV K
Sbjct: 68  LFHQIKQPNIFLWNTMIRGLVSNDCFDDAIEFYGLMRSEGFLP-------NNFTFPFVLK 120

Query: 84  KNMAKARDLFLAMPEKNSVSW----------SAMISGYIECGQLDKAVELFKVAPVKSVV 133
              A+  DL L +     V            ++++  Y +CG L+ A ++F   P K+VV
Sbjct: 121 A-CARLLDLQLGVKIHTLVVKGGFDCDVFVKTSLVCLYAKCGYLEDAHKVFDDIPDKNVV 179

Query: 134 AWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ 193
           +WTA+ISGY+  G        + + + R ++ + + P++ ++  VL  C+ L  L  G+ 
Sbjct: 180 SWTAIISGYIGVGKF-----REAIDMFRRLLEMNLAPDSFTIVRVLSACTQLGDLNSGEW 234

Query: 194 VHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGK 253
           +H+ + +  + ++    T L+ MY KCG++E A  +F  +  KD+V+W AMI GYA +G 
Sbjct: 235 IHKCIMEMGMVRNVFVGTSLVDMYAKCGNMEKARSVFDGMPEKDIVSWGAMIQGYALNGL 294

Query: 254 GEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYT 313
            ++A+ LF +M+ E +KPD  T V +L AC   G ++LG ++   +V+       P   T
Sbjct: 295 PKEAIDLFLQMQRENVKPDCYTVVGVLSACARLGALELG-EWVSGLVDRNEFLYNPVLGT 353

Query: 314 CMVDLLGRAGKLVEAVDLIKKMPFKPQ 340
            ++DL  + G +  A ++ K M  K +
Sbjct: 354 ALIDLYAKCGSMSRAWEVFKGMKEKDR 380



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 52/239 (21%), Positives = 89/239 (37%), Gaps = 33/239 (13%)

Query: 203 LCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFD 262
           LC D   L  ++       D      LF +I++ ++  WN MI G   +   + A+  + 
Sbjct: 42  LCHDNYLLNMILRCSFDFSDTNYTRFLFHQIKQPNIFLWNTMIRGLVSNDCFDDAIEFYG 101

Query: 263 KMKDEGMKPDSITFVALLLACNHAGLVDLGIQY--------FD-------SMVNDYGIAA 307
            M+ EG  P++ TF  +L AC     + LG++         FD       S+V  Y    
Sbjct: 102 LMRSEGFLPNNFTFPFVLKACARLLDLQLGVKIHTLVVKGGFDCDVFVKTSLVCLYAKCG 161

Query: 308 K-----------PD----HYTCMVDLLGRAGKLVEAVDLIKK---MPFKPQPAIFGTLLS 349
                       PD     +T ++      GK  EA+D+ ++   M   P       +LS
Sbjct: 162 YLEDAHKVFDDIPDKNVVSWTAIISGYIGVGKFREAIDMFRRLLEMNLAPDSFTIVRVLS 221

Query: 350 ACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVV 408
           AC     L+  E+    +  +           L ++YA     +    +   M E ++V
Sbjct: 222 ACTQLGDLNSGEWIHKCIMEMGMVRNVFVGTSLVDMYAKCGNMEKARSVFDGMPEKDIV 280


>gi|296083884|emb|CBI24272.3| unnamed protein product [Vitis vinifera]
          Length = 729

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 225/565 (39%), Positives = 328/565 (58%), Gaps = 27/565 (4%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLS-----CI---LLNS 52
           +  K    WN +++G+   +G+ K A  +F K+    V   +I ++     C    LL  
Sbjct: 172 IEFKDVFMWNIMVSGYT-SKGEFKKALNVFRKMVLEGVKPNSITIASAVSACTNLSLLRH 230

Query: 53  DDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAM--ISG 110
              +  +         D    N+++  + + +++  AR  F  + + + VSW+AM  ++G
Sbjct: 231 GREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAVTG 290

Query: 111 YIECGQLDKAVELFKVAPV----------KSVVAWTAMISGYMKFGYVENSWAEDGLKLL 160
           + + G    A+E F+   +          + VV W ++IS   + G   N+     L LL
Sbjct: 291 FTQYGDGKAALEFFQRMHIACSVFSELSTRDVVVWNSIISACAQSGRSVNA-----LDLL 345

Query: 161 RMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKC 220
           R M    +  N  ++ S L  CS L++L+ GK++HQ + +  L      L  LI MY +C
Sbjct: 346 REMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRC 405

Query: 221 GDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 280
           G ++ + ++F  + ++D+V+WN MIS Y  HG G  A+ LF + +  G+KP+ ITF  LL
Sbjct: 406 GSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTMGLKPNHITFTNLL 465

Query: 281 LACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQ 340
            AC+H+GL++ G +YF  M  +Y +    + Y CMVDLL RAG+  E ++ I+KMPF+P 
Sbjct: 466 SACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETLEFIEKMPFEPN 525

Query: 341 PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRL 400
            A++G+LL ACR+H   DLAE+AA  LF L P  ++G YV +ANIY+A  +W+D A+IR 
Sbjct: 526 AAVWGSLLGACRIHCNPDLAEYAARYLFELEP-QSSGNYVLMANIYSAAGRWEDAAKIRC 584

Query: 401 SMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEF 460
            MKE  V K PG SWIEV   +H F  GD  HP +  I  K++ L   +K  GYVPD  F
Sbjct: 585 LMKERGVTKPPGCSWIEVKRKLHSFVVGDTSHPLMEQISAKMESLYFDIKEIGYVPDTNF 644

Query: 461 ALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEK 520
            L  V E+ KE  L  HSEK+A+AFGLI    GTP+R+ KNLRVCGDCH ATK+IS +EK
Sbjct: 645 VLQDVDEDEKEFSLCGHSEKIALAFGLISTTAGTPLRIIKNLRVCGDCHSATKFISKVEK 704

Query: 521 REIIVRDTTRFHHFKDGTCSCGDYW 545
           R+II+RD  RFHHF DG CSCGDYW
Sbjct: 705 RDIIMRDNYRFHHFVDGVCSCGDYW 729



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 77/285 (27%), Positives = 144/285 (50%), Gaps = 21/285 (7%)

Query: 19  QRGKLKDAQELFDKIPQPDVVSYNIMLS--CILLNSDDVVAAFDFFQRLPIK-DTASWNT 75
           Q G ++DA+ +FDK+ + +V S+  ++   C L + ++ +  F       ++ D   +  
Sbjct: 57  QTGCVEDARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPK 116

Query: 76  MISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKS 131
           +     + KN    +D++  M     E NS    +++  +I+CG++D A   F+    K 
Sbjct: 117 VFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKD 176

Query: 132 VVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLG 191
           V  W  M+SGY   G  + +     L + R M+  G++PN+ +++S +  C++LS L+ G
Sbjct: 177 VFMWNIMVSGYTSKGEFKKA-----LNVFRKMVLEGVKPNSITIASAVSACTNLSLLRHG 231

Query: 192 KQVHQLVFK-SPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAM--ISGY 248
           +++H    K   L  D      L+  Y KC  +E A + F  I++ D+V+WNAM  ++G+
Sbjct: 232 REIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAVTGF 291

Query: 249 AQHGKGEKALRLFDKMK------DEGMKPDSITFVALLLACNHAG 287
            Q+G G+ AL  F +M        E    D + + +++ AC  +G
Sbjct: 292 TQYGDGKAALEFFQRMHIACSVFSELSTRDVVVWNSIISACAQSG 336



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 60/188 (31%), Positives = 101/188 (53%), Gaps = 5/188 (2%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI 164
           S ++  Y + G ++ A  +F     ++V +WTA++  Y   G  E +     +KL  +M+
Sbjct: 49  SRLLEVYCQTGCVEDARRMFDKMSERNVFSWTAIMEMYCGLGDYEET-----IKLFYLMV 103

Query: 165 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 224
             G+RP+      V   CS L + ++GK V+  +       ++     ++ M+ KCG ++
Sbjct: 104 NEGVRPDHFVFPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMD 163

Query: 225 DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 284
            A + F EI+ KDV  WN M+SGY   G+ +KAL +F KM  EG+KP+SIT  + + AC 
Sbjct: 164 IARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALNVFRKMVLEGVKPNSITIASAVSACT 223

Query: 285 HAGLVDLG 292
           +  L+  G
Sbjct: 224 NLSLLRHG 231



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 88/165 (53%), Gaps = 5/165 (3%)

Query: 176 SSVLLGCSHLSSLQLGKQVH-QLVFKS-PLCKDTTALTPLISMYCKCGDLEDACKLFLEI 233
           +S+L  C  L +L+LG QVH QLV     +C+     + L+ +YC+ G +EDA ++F ++
Sbjct: 14  ASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLG--SRLLEVYCQTGCVEDARRMFDKM 71

Query: 234 QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGI 293
             ++V +W A++  Y   G  E+ ++LF  M +EG++PD   F  +  AC+      +G 
Sbjct: 72  SERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGK 131

Query: 294 QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 338
             +D M++  G          ++D+  + G++  A    +++ FK
Sbjct: 132 DVYDYMLS-IGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFK 175


>gi|222631044|gb|EEE63176.1| hypothetical protein OsJ_17985 [Oryza sativa Japonica Group]
          Length = 745

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 226/596 (37%), Positives = 337/596 (56%), Gaps = 69/596 (11%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFF-----QR 64
           N+++  +AK  G +++A ++F+ +   DVVS+N M++     S +  AAF+ F     + 
Sbjct: 159 NALIDAYAKC-GLMENAVKVFNMMEFKDVVSWNAMVAG-YSQSGNFKAAFELFKNMRKEN 216

Query: 65  LPIKDTASWNTMISGFVQKKNMAKARDLFLAM---------------------------- 96
           +P+ D  +W  +I+G+ Q+    +A ++F  M                            
Sbjct: 217 IPL-DMVTWTAVIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQG 275

Query: 97  ---------------------PEKNSVSWSAMISGYIECGQLDKAVELFKVAPV--KSVV 133
                                 +++ + ++A+I  Y +C     A  +F   P+  ++VV
Sbjct: 276 MEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVV 335

Query: 134 AWTAMISGYMKFGYVENSWAEDGLKLLRMMIG--LGIRPNASSLSSVLLGCSHLSSLQLG 191
            WT MI G+ ++G      + D LKL   MI    G+ PNA ++S +L+ C+HL+++++G
Sbjct: 336 TWTVMIGGHAQYGD-----SNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIG 390

Query: 192 KQVHQLVFKSPLCKDTTALTP--LISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYA 249
           KQ+H  V +      +       LI+MY KCGD++ A  +F  + +K  ++W +M++GY 
Sbjct: 391 KQIHAYVLRHHQYDSSAYFVANCLINMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYG 450

Query: 250 QHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKP 309
            HG+G +AL +FDKM+  G  PD ITF+ +L AC+H G+VD G+ YFDSM  DYG+  + 
Sbjct: 451 MHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRA 510

Query: 310 DHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFN 369
           +HY   +DLL R G+L +A   +K MP +P   ++  LLSACRVH  ++LAE A   L  
Sbjct: 511 EHYAYAIDLLARFGRLDKAWKTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKLVE 570

Query: 370 LNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGD 429
           +N  N  G Y  ++NIYA   +W DVARIR  MK++ + K PG SW++       F  GD
Sbjct: 571 MNAEND-GSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQGQKGTASFFVGD 629

Query: 430 RVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIK 489
           R HP    I+  L+ L  R+K  GYVP+  FALH V EE K  LL+ HSEKLA+A+GL+ 
Sbjct: 630 RSHPLSPQIYALLESLIDRIKAMGYVPETNFALHDVDEEEKNNLLVEHSEKLALAYGLLT 689

Query: 490 VPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
              G PIR+ KNLRVCGDCH A  YIS I   EI+VRD +RFHHFK+G+CSCG YW
Sbjct: 690 TFPGCPIRITKNLRVCGDCHSAFTYISKIVDHEIVVRDPSRFHHFKNGSCSCGGYW 745



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 120/439 (27%), Positives = 193/439 (43%), Gaps = 75/439 (17%)

Query: 3   VKTTVNWNSVLAGFAKQRGKLKDAQELFDKIP----------QPDVVS-YNIMLSCILLN 51
           +   ++WNS+++   K       A +LF K+           + D++S  NI+ +C  L 
Sbjct: 76  IDDVISWNSIVSAHVKSSNAWT-ALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLK 134

Query: 52  SDDVVAAF--DFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMIS 109
           +         +  +     D    N +I  + +   M  A  +F  M  K+ VSW+AM++
Sbjct: 135 AVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVA 194

Query: 110 GYIECGQLDKAVELFKVAPVKSV----VAWTAMISGYMKFGYVENSWAEDGLKLLRMMIG 165
           GY + G    A ELFK    +++    V WTA+I+GY + G      + + L + R MI 
Sbjct: 195 GYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRG-----CSHEALNVFRQMIF 249

Query: 166 LGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLC----------KDTTALTPLIS 215
            G  PN  ++ SVL  C+ L +   G ++H    K+ L           +D      LI 
Sbjct: 250 SGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALID 309

Query: 216 MYCKCGDLEDACKLFLEI--QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE--GMKP 271
           MY KC   + A  +F +I  + ++VVTW  MI G+AQ+G    AL+LF +M  E  G+ P
Sbjct: 310 MYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAP 369

Query: 272 DSITFVALLLACNHAGLVDLGIQ---------------YF--DSMVNDYGIAAKPD---- 310
           ++ T   +L+AC H   + +G Q               YF  + ++N Y      D    
Sbjct: 370 NAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLINMYSKCGDVDTARH 429

Query: 311 -----------HYTCMVDLLGRAGKLVEAVDLIKKM---PFKPQPAIFGTLLSACRVHKR 356
                       +T M+   G  G+  EA+D+  KM    F P    F  +L AC     
Sbjct: 430 VFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGM 489

Query: 357 LD--LAEFAAMNL-FNLNP 372
           +D  L+ F +M+  + L P
Sbjct: 490 VDQGLSYFDSMSADYGLTP 508



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 59/210 (28%), Positives = 107/210 (50%), Gaps = 10/210 (4%)

Query: 98  EKNSVSWSAMISGYIECGQLDKAVELFKVAP---VKSVVAWTAMISGYMKFGYVENSW-A 153
           E N    +A+++ Y  CG L++A  +F       +  V++W +++S ++K     N+W A
Sbjct: 42  ESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVK---SSNAWTA 98

Query: 154 EDGLKLLRMMIG---LGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTAL 210
            D    + +++       R +  S+ ++L  C  L ++   K+VH    ++    D    
Sbjct: 99  LDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVG 158

Query: 211 TPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMK 270
             LI  Y KCG +E+A K+F  ++ KDVV+WNAM++GY+Q G  + A  LF  M+ E + 
Sbjct: 159 NALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIP 218

Query: 271 PDSITFVALLLACNHAGLVDLGIQYFDSMV 300
            D +T+ A++   +  G     +  F  M+
Sbjct: 219 LDMVTWTAVIAGYSQRGCSHEALNVFRQMI 248



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 83/185 (44%), Gaps = 10/185 (5%)

Query: 163 MIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGD 222
           M+  G R +  +L  VL  C  L S + G   H L+  +    +      L++MY +CG 
Sbjct: 1   MLRAGTRLDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGS 60

Query: 223 LEDACKLFLEIQRK---DVVTWNAMISGYAQHGKGEKALRLFDKM------KDEGMKPDS 273
           LE+A  +F EI ++   DV++WN+++S + +      AL LF KM      K    + D 
Sbjct: 61  LEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDI 120

Query: 274 ITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIK 333
           I+ V +L AC     V    +   + + + G          ++D   + G +  AV +  
Sbjct: 121 ISIVNILPACGSLKAVPQTKEVHGNAIRN-GTFLDVFVGNALIDAYAKCGLMENAVKVFN 179

Query: 334 KMPFK 338
            M FK
Sbjct: 180 MMEFK 184


>gi|297831082|ref|XP_002883423.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329263|gb|EFH59682.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 679

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 214/545 (39%), Positives = 325/545 (59%), Gaps = 31/545 (5%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  K  V++N+V+AG+A Q G  +DA  +  ++   D+      LS +L    + V    
Sbjct: 166 MPRKDVVSYNTVIAGYA-QSGMYEDALRMVREMGTSDLKPDAFTLSSVLPIFSEYVDVLK 224

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
                           I G+V +K +    D+++          S+++  Y +  +++ +
Sbjct: 225 -------------GKEIHGYVIRKGIDS--DVYIG---------SSLVDMYAKSARIEDS 260

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLL 180
             +F     +  ++W ++++GY     V+N    + L+L R M+   +RP A + SSV+ 
Sbjct: 261 ERVFSHLYRRDSISWNSLVAGY-----VQNGRYNEALRLFRQMVSAKVRPGAVAFSSVIP 315

Query: 181 GCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVT 240
            C+HL++L LGKQ+H  V +    ++    + L+ MY KCG+++ A K+F  +   D V+
Sbjct: 316 ACAHLATLHLGKQLHGYVLRGGFGRNIFIASALVDMYSKCGNIQAARKIFDRMNLHDEVS 375

Query: 241 WNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV 300
           W A+I G+A HG G +A+ LF++MK +G+KP+ + FVA+L AC+H GLVD    YF+SM 
Sbjct: 376 WTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMT 435

Query: 301 NDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLA 360
             YG+  + +HY  + DLLGRAGKL EA D I KM  +P  +++ TLLS+C VHK L+LA
Sbjct: 436 KVYGLNQELEHYAAVADLLGRAGKLEEAYDFISKMRVEPTGSVWSTLLSSCSVHKNLELA 495

Query: 361 EFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGT 420
           E  A  +F ++  N  G YV + N+YA+  +W ++A++RL +++  + K P  SWIE+  
Sbjct: 496 EKVAEKIFTIDSEN-MGAYVLMCNMYASNGRWKEMAKLRLRVRKKGLRKKPACSWIEMKN 554

Query: 421 VVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEK 480
             H F SGDR HP +  I+E LK + ++M+  GYV D    LH V EE K +LL  HSE+
Sbjct: 555 KTHGFVSGDRSHPSMDRINEFLKAVMEQMEKEGYVADTSGVLHDVDEEHKRELLFGHSER 614

Query: 481 LAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCS 540
           LA+AFG+I    GT IRV KN+R+C DCH A K+IS I +REIIVRD +RFHHF  G+CS
Sbjct: 615 LAVAFGIINTEPGTTIRVTKNIRICTDCHVAIKFISKITEREIIVRDNSRFHHFNRGSCS 674

Query: 541 CGDYW 545
           CGDYW
Sbjct: 675 CGDYW 679



 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 91/362 (25%), Positives = 157/362 (43%), Gaps = 48/362 (13%)

Query: 75  TMISGFVQKKNMAKARDL---FLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKS 131
           T+I    + K+ ++A+ L   F+     +  S S +IS Y     L +A+ +FK      
Sbjct: 10  TLIKNPTRIKSKSQAKQLHAQFIRTQSLSHTSASIVISIYTNLKLLHEALLVFKTLESPP 69

Query: 132 VVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLG 191
           V+AW ++I  +      + S     L     M   G  P+ +   SVL  C+ +  L+ G
Sbjct: 70  VLAWKSVIRCF-----TDQSLFSRALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFG 124

Query: 192 KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQH 251
           + VH  + +  +  D      L++MY K   ++   K+F  + RKDVV++N +I+GYAQ 
Sbjct: 125 ESVHGFIVRLGMDCDLYTGNALMNMYSKLLGIDSVRKVFELMPRKDVVSYNTVIAGYAQS 184

Query: 252 GKGEKALRLFDKMKDEGMKPDSITFVALLLACN-----------HAGLVDLGIQ---YF- 296
           G  E ALR+  +M    +KPD+ T  ++L   +           H  ++  GI    Y  
Sbjct: 185 GMYEDALRMVREMGTSDLKPDAFTLSSVLPIFSEYVDVLKGKEIHGYVIRKGIDSDVYIG 244

Query: 297 DSMVNDYGIAAKPD---------------HYTCMVDLLGRAGKLVEAVDLIKKM---PFK 338
            S+V+ Y  +A+ +                +  +V    + G+  EA+ L ++M     +
Sbjct: 245 SSLVDMYAKSARIEDSERVFSHLYRRDSISWNSLVAGYVQNGRYNEALRLFRQMVSAKVR 304

Query: 339 PQPAIFGTLLSAC----RVHKRLDLAEFAAMNLFNLNPANAAGC---YVQLANIYAAMKK 391
           P    F +++ AC     +H    L  +     F  N   A+     Y +  NI AA K 
Sbjct: 305 PGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGRNIFIASALVDMYSKCGNIQAARKI 364

Query: 392 WD 393
           +D
Sbjct: 365 FD 366


>gi|296086269|emb|CBI31710.3| unnamed protein product [Vitis vinifera]
          Length = 649

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 213/541 (39%), Positives = 316/541 (58%), Gaps = 12/541 (2%)

Query: 9   WNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNS----DDVVAAFDFFQR 64
           WNS++  + + + +  +A E++  + +   +  ++ +   L++      D+  A + F +
Sbjct: 117 WNSMIRAYTRSK-QYNEALEMYYCMVEKGGLERDVFIGAGLVDMYSKMGDLKRAREVFDK 175

Query: 65  LPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELF 124
           +P +D  +WN MI+G  Q ++   AR +F  M +++ VSW  M++GY   G   + +ELF
Sbjct: 176 MPKRDVVAWNAMIAGLSQSEDPYVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELF 235

Query: 125 KVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSH 184
               + +V  W  +I+ YM+ G+     A++ +     M      PN+ +  SVL   ++
Sbjct: 236 DKMKLGNVT-WNVIIAAYMQNGH-----AKEAISSFHQMRLENFHPNSVTFVSVLPAAAY 289

Query: 185 LSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAM 244
           L++ + G   H  + +     +T     LI MY KCG L+ + KLF E+  KD V+WNAM
Sbjct: 290 LAAFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQLDYSEKLFNEMDHKDTVSWNAM 349

Query: 245 ISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYG 304
           +SGYA HG G++A+ LF  M++  ++ DS++FV++L AC HAGLV+ G + F SM + Y 
Sbjct: 350 LSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSACRHAGLVEEGRKIFHSMSDKYH 409

Query: 305 IAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAA 364
           I    +HY CMVDLLGRAG   E +  IK MP +P   ++G LL +CR+H  + L E A 
Sbjct: 410 IKPDLEHYACMVDLLGRAGLFDETLGFIKVMPVEPDAGVWGALLGSCRMHSNVKLGEVAL 469

Query: 365 MNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHE 424
            +L  L P N A  +V L++IYA   +W D  + R  M +  + K PG SW+E+   VH 
Sbjct: 470 DHLVKLEPRNPAH-FVVLSSIYAQSGRWADAGKARSKMNDLGLKKTPGCSWVELKNKVHA 528

Query: 425 FRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIA 484
           FR GD+ HP+L S+H     L ++M+  GYVPD    L  V EE KE  L  HSE+LAI 
Sbjct: 529 FRVGDKSHPQLESMHLLWNTLLEKMEKIGYVPDRSCVLQNVEEEDKEMFLYSHSERLAIT 588

Query: 485 FGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDY 544
           F L+  P G+ I++ KNLRVC DCH  TK+IS I  R IIVRD TRFHHF+DG CSC DY
Sbjct: 589 FALLNTPPGSTIQIVKNLRVCADCHTTTKFISKITTRRIIVRDATRFHHFEDGICSCNDY 648

Query: 545 W 545
           W
Sbjct: 649 W 649


>gi|224140095|ref|XP_002323422.1| predicted protein [Populus trichocarpa]
 gi|222868052|gb|EEF05183.1| predicted protein [Populus trichocarpa]
          Length = 574

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 219/531 (41%), Positives = 306/531 (57%), Gaps = 45/531 (8%)

Query: 54  DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKA----RDLFLAMPEKNSVSW----- 104
           D+V A   F ++  +D  SW+ MI GFV+  +  +     R+L  A  + ++ S      
Sbjct: 50  DLVTAHLLFNKMEERDPVSWSVMIGGFVKNGDYERCFQTFRELIRAGSKPDNFSLPFVIK 109

Query: 105 ------------------------------SAMISGYIECGQLDKAVELFKVAPVKSVVA 134
                                         S ++  Y +CG +D A +LF   P K +V 
Sbjct: 110 ACRDTMGLIMGRLIHSTVLKNGLHLDNFVCSTLVDMYAKCGMIDNAKQLFDRMPKKDLVT 169

Query: 135 WTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQV 194
            T MI+GY + G    SW      L   M   G  P+  ++ +++  C+ L ++   + V
Sbjct: 170 RTVMIAGYAECGKPNESWV-----LFDQMRRDGFVPDKVAMVTIVNACAKLGAMNKARLV 224

Query: 195 HQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKG 254
           H  V       D    T +I MY KCG ++ + ++F  +++K+V++W+AMI  Y  HG+G
Sbjct: 225 HDYVCARRYSLDVELGTAMIDMYAKCGSIDSSREIFDRMEQKNVISWSAMIGAYGYHGQG 284

Query: 255 EKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTC 314
            +AL LF  M + G+ P+ ITF++LL AC+HAGLVD G+Q F  M   YG+     HYTC
Sbjct: 285 REALELFHMMLNSGIIPNRITFISLLYACSHAGLVDDGLQLFSLMSVSYGVRPDVKHYTC 344

Query: 315 MVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPAN 374
           MVDLLGRAG+L +A+ LI+ M  +    I+   L ACR+H+++DLAE AA  L +L   N
Sbjct: 345 MVDLLGRAGRLDQALRLIENMEVEKDEGIWCAFLGACRIHRQVDLAEKAAKLLLSLQTQN 404

Query: 375 AAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPE 434
             G Y+ L+NIYA   +W DVA+IR  M +  + K+PGY+WIEV  +++ F +GD  H  
Sbjct: 405 P-GHYILLSNIYANAGRWKDVAKIRNLMAKRRLKKIPGYTWIEVDNIIYRFGAGDNSHLR 463

Query: 435 LVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGT 494
              I+E LK L ++++ AGYVPD    LH V EEVK  +L  HSEKLAIAFGLI  P GT
Sbjct: 464 SNEIYEMLKSLSQKLESAGYVPDTNSVLHDVDEEVKLGILHAHSEKLAIAFGLIATPDGT 523

Query: 495 PIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           PIR+ KNLRVCGDCH   K +SAI +R+IIVRD  RFHHFK+G CSCGDYW
Sbjct: 524 PIRITKNLRVCGDCHSFCKLVSAITQRDIIVRDANRFHHFKEGICSCGDYW 574



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 80/164 (48%), Gaps = 8/164 (4%)

Query: 177 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK 236
           S L  C ++  +   KQVH  V  + +  D      L+ M  K  DL  A  LF +++ +
Sbjct: 8   STLFKCRNIFQI---KQVHAQVTTTGIIHDLIVANKLLYMCAKHKDLVTAHLLFNKMEER 64

Query: 237 DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYF 296
           D V+W+ MI G+ ++G  E+  + F ++   G KPD+ +   ++ AC     + +G +  
Sbjct: 65  DPVSWSVMIGGFVKNGDYERCFQTFRELIRAGSKPDNFSLPFVIKACRDTMGLIMG-RLI 123

Query: 297 DSMVNDYGIAAKPDHYTC--MVDLLGRAGKLVEAVDLIKKMPFK 338
            S V   G+    D++ C  +VD+  + G +  A  L  +MP K
Sbjct: 124 HSTVLKNGL--HLDNFVCSTLVDMYAKCGMIDNAKQLFDRMPKK 165


>gi|168017714|ref|XP_001761392.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162687398|gb|EDQ73781.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 833

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 215/532 (40%), Positives = 316/532 (59%), Gaps = 13/532 (2%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNS--DDVVAAFDFFQRLPIK-DTASWNTMI 77
           G ++ A+ +FD +   DVVS+ +M+     N   +D    F   Q   I+ D  ++  ++
Sbjct: 308 GSIEGARRVFDNMKVRDVVSWTVMIEGYAENGNIEDAFGLFATMQEEGIQPDRITYMHIM 367

Query: 78  SGFVQKKNMAKARDLF----LAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVV 133
           +      N+  AR++     +A    + +  +A++  Y +CG +  A ++F   P + VV
Sbjct: 368 NACAISANLNHAREIHSQVDIAGFGTDLLVSTALVHMYAKCGAIKDARQVFDAMPRRDVV 427

Query: 134 AWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ 193
           +W+AMI  Y     VEN +  +  +   +M    I P+  +  ++L  C HL +L +G +
Sbjct: 428 SWSAMIGAY-----VENGYGTEAFETFHLMKRSNIEPDGVTYINLLNACGHLGALDVGME 482

Query: 194 VHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGK 253
           ++    K+ L         LI M  K G +E A  +F  + R+DV+TWNAMI GY+ HG 
Sbjct: 483 IYTQAIKADLVSHVPLGNALIIMNAKHGSVERARYIFDTMVRRDVITWNAMIGGYSLHGN 542

Query: 254 GEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYT 313
             +AL LFD+M  E  +P+S+TFV +L AC+ AG VD G ++F  ++   GI      Y 
Sbjct: 543 AREALYLFDRMLKERFRPNSVTFVGVLSACSRAGFVDEGRRFFTYLLEGRGIVPTVKLYG 602

Query: 314 CMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPA 373
           CMVDLLGRAG+L EA  LIK MP KP  +I+ +LL ACR+H  LD+AE AA     ++P 
Sbjct: 603 CMVDLLGRAGELDEAELLIKSMPVKPTSSIWSSLLVACRIHGNLDVAERAAERCLMIDPY 662

Query: 374 NAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHP 433
           + A  YVQL+++YAA   W++VA++R  M+   + K  G +WIEV   VH F   DR HP
Sbjct: 663 DGA-VYVQLSHMYAAAGMWENVAKVRKVMESRGIRKEQGCTWIEVAGKVHTFVVEDRSHP 721

Query: 434 ELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLG 493
            +  I+ +L  L   +K  GY+P  +  LH VGE+ KE+ + +HSEKLAIA+G++ +P G
Sbjct: 722 LVGEIYAELARLMNAIKREGYIPITQNVLHDVGEQQKEEAISYHSEKLAIAYGVLSLPSG 781

Query: 494 TPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           TPIR++KNLRVC DCH A+K+IS +  REII RD +RFHHFKDG CSCGDYW
Sbjct: 782 TPIRIYKNLRVCSDCHSASKFISKVTGREIIARDASRFHHFKDGVCSCGDYW 833



 Score =  141 bits (356), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 100/345 (28%), Positives = 168/345 (48%), Gaps = 51/345 (14%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELF----DKIPQPDVVSYNIMLSCILLNSDDVVAAF 59
           KT V WN+++AG+A Q G +K+A  LF    D+  +P ++++   LS  +L++    A  
Sbjct: 121 KTVVTWNALIAGYA-QVGHVKEAFALFRQMVDEGLEPSIITF---LS--VLDACSSPAGL 174

Query: 60  DFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDK 119
           ++ + +  +       + +GFV    +                  +A++S Y++ G +D 
Sbjct: 175 NWGKEVHAQ------VVTAGFVSDFRIG-----------------TALVSMYVKGGSMDD 211

Query: 120 AVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVL 179
           A ++F    ++ V  +  M+ GY K G     W E   +L   M  +G++PN  S  S+L
Sbjct: 212 ARQVFDGLHIRDVSTFNVMVGGYAKSG----DW-EKAFELFYRMQQVGLKPNKISFLSIL 266

Query: 180 LGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVV 239
            GC    +L  GK VH     + L  D    T LI MY  CG +E A ++F  ++ +DVV
Sbjct: 267 DGCWTPEALAWGKAVHAQCMNAGLVDDIRVATSLIRMYTTCGSIEGARRVFDNMKVRDVV 326

Query: 240 TWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC------NHAGLVDLGI 293
           +W  MI GYA++G  E A  LF  M++EG++PD IT++ ++ AC      NHA       
Sbjct: 327 SWTVMIEGYAENGNIEDAFGLFATMQEEGIQPDRITYMHIMNACAISANLNHA------- 379

Query: 294 QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 338
           +   S V+  G        T +V +  + G + +A  +   MP +
Sbjct: 380 REIHSQVDIAGFGTDLLVSTALVHMYAKCGAIKDARQVFDAMPRR 424



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 88/308 (28%), Positives = 146/308 (47%), Gaps = 50/308 (16%)

Query: 100 NSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKL 159
           N    + +I  Y  CG + +A ++F     K+VV W A+I+GY + G+V+ ++A     L
Sbjct: 91  NIYELNTLIKLYSICGNVTEARQIFDSVENKTVVTWNALIAGYAQVGHVKEAFA-----L 145

Query: 160 LRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCK 219
            R M+  G+ P+  +  SVL  CS  + L  GK+VH  V  +    D    T L+SMY K
Sbjct: 146 FRQMVDEGLEPSIITFLSVLDACSSPAGLNWGKEVHAQVVTAGFVSDFRIGTALVSMYVK 205

Query: 220 CGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVAL 279
            G ++DA ++F  +  +DV T+N M+ GYA+ G  EKA  LF +M+  G+KP+ I+F+++
Sbjct: 206 GGSMDDARQVFDGLHIRDVSTFNVMVGGYAKSGDWEKAFELFYRMQQVGLKPNKISFLSI 265

Query: 280 L----------------LACNHAGLVDLGIQYFDSMVNDYGIAAKPD------------- 310
           L                  C +AGLVD  I+   S++  Y      +             
Sbjct: 266 LDGCWTPEALAWGKAVHAQCMNAGLVD-DIRVATSLIRMYTTCGSIEGARRVFDNMKVRD 324

Query: 311 --HYTCMVDLLGRAGKLVEAVDLIKKMP---FKPQPAIFGTLLSAC----------RVHK 355
              +T M++     G + +A  L   M     +P    +  +++AC           +H 
Sbjct: 325 VVSWTVMIEGYAENGNIEDAFGLFATMQEEGIQPDRITYMHIMNACAISANLNHAREIHS 384

Query: 356 RLDLAEFA 363
           ++D+A F 
Sbjct: 385 QVDIAGFG 392



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 69/260 (26%), Positives = 113/260 (43%), Gaps = 33/260 (12%)

Query: 182 CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTW 241
           C+ L    LGKQV   + +     +   L  LI +Y  CG++ +A ++F  ++ K VVTW
Sbjct: 67  CTELRDAALGKQVRDHIIQGGRQLNIYELNTLIKLYSICGNVTEARQIFDSVENKTVVTW 126

Query: 242 NAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN-----------HAGLVD 290
           NA+I+GYAQ G  ++A  LF +M DEG++P  ITF+++L AC+           HA +V 
Sbjct: 127 NALIAGYAQVGHVKEAFALFRQMVDEGLEPSIITFLSVLDACSSPAGLNWGKEVHAQVVT 186

Query: 291 LG----IQYFDSMVNDYGIAAKPDH---------------YTCMVDLLGRAGKLVEAVDL 331
            G     +   ++V+ Y      D                +  MV    ++G   +A +L
Sbjct: 187 AGFVSDFRIGTALVSMYVKGGSMDDARQVFDGLHIRDVSTFNVMVGGYAKSGDWEKAFEL 246

Query: 332 IKKMP---FKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAA 388
             +M     KP    F ++L  C   + L   +       N    +       L  +Y  
Sbjct: 247 FYRMQQVGLKPNKISFLSILDGCWTPEALAWGKAVHAQCMNAGLVDDIRVATSLIRMYTT 306

Query: 389 MKKWDDVARIRLSMKENNVV 408
               +   R+  +MK  +VV
Sbjct: 307 CGSIEGARRVFDNMKVRDVV 326


>gi|298204516|emb|CBI23791.3| unnamed protein product [Vitis vinifera]
          Length = 615

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 207/475 (43%), Positives = 308/475 (64%), Gaps = 10/475 (2%)

Query: 75  TMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVA 134
           ++I  +V+   +  AR LF  M  ++  SW+A+I+GY++ G++  A +LF+    +++V+
Sbjct: 147 SLIDMYVKCGVIGDARKLFDKMIVRDMASWNALIAGYMKEGEIGVAEDLFERMEHRNIVS 206

Query: 135 WTAMISGYMKFGYVENSWAEDGLKLLRMMI--GLGIRPNASSLSSVLLGCSHLSSLQLGK 192
           WTAMISGY      +N +AE  L L   M+  G  ++PN  ++ SVL  C+  ++L+ G+
Sbjct: 207 WTAMISGY-----TQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALERGR 261

Query: 193 QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA--CKLFLEIQRKDVVTWNAMISGYAQ 250
           ++H       L  +++  T L  MY KC  L +A  C   +    K+++ WN MI+ YA 
Sbjct: 262 RIHDFANGIGLHLNSSVQTALAGMYAKCYSLVEARCCFDMIAQNGKNLIAWNTMITAYAS 321

Query: 251 HGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPD 310
           HG G +A+ +F+ M   G++PD++TF+ LL  C+H+GL+D G+ +F+ M   + +  + +
Sbjct: 322 HGCGVEAVSIFENMLRAGVQPDAVTFMGLLSGCSHSGLIDAGLNHFNDMGTIHSVEPRVE 381

Query: 311 HYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNL 370
           HY C+VDLLGRAG+LVEA +LI +MP +  P+++G LL+ACR H+ L++AE AA  LF L
Sbjct: 382 HYACVVDLLGRAGRLVEAKELISQMPMQAGPSVWGALLAACRSHRNLEIAELAARRLFVL 441

Query: 371 NPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDR 430
            P N+ G YV L+N+YA    W++V ++R  +K   + K PG SWIE+    H F   D+
Sbjct: 442 EPDNS-GNYVLLSNLYAEAGMWEEVKKLRALLKYQGMKKSPGCSWIEINGKSHLFMGADK 500

Query: 431 VHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKV 490
            HP+   I++ L+ L +++K+AGY+PD  F LH + EE KE  L  HSEKLAIAFGL+  
Sbjct: 501 SHPQAKEIYKFLEALPEKIKMAGYIPDTSFVLHDISEEEKEYNLTTHSEKLAIAFGLLNT 560

Query: 491 PLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
             G  +RV KNLR+CGDCH ATK+IS I +REIIVRD  RFH FKDG+CSCGDYW
Sbjct: 561 RPGVVLRVTKNLRICGDCHAATKFISKIYEREIIVRDLNRFHCFKDGSCSCGDYW 615



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 61/196 (31%), Positives = 91/196 (46%), Gaps = 34/196 (17%)

Query: 166 LGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLED 225
           LG+  +  +L  VL  C+ LS + +G+ VH    +  L  D      LI MY KCG + D
Sbjct: 101 LGLLGDNFTLPFVLKSCADLSRVCMGRCVHGQGLRVGLEGDFYVGASLIDMYVKCGVIGD 160

Query: 226 ACKLFLEIQRKDVVTWNA-------------------------------MISGYAQHGKG 254
           A KLF ++  +D+ +WNA                               MISGY Q+G  
Sbjct: 161 ARKLFDKMIVRDMASWNALIAGYMKEGEIGVAEDLFERMEHRNIVSWTAMISGYTQNGFA 220

Query: 255 EKALRLFDKMKDEG--MKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY 312
           E+AL LFD+M  +G  MKP+ +T V++L AC  +  ++ G +  D   N  G+       
Sbjct: 221 EQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALERGRRIHD-FANGIGLHLNSSVQ 279

Query: 313 TCMVDLLGRAGKLVEA 328
           T +  +  +   LVEA
Sbjct: 280 TALAGMYAKCYSLVEA 295



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 48/203 (23%), Positives = 99/203 (48%), Gaps = 19/203 (9%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLN--SDDVVAA 58
           M V+   +WN+++AG+ K+ G++  A++LF+++   ++VS+  M+S    N  ++  +  
Sbjct: 168 MIVRDMASWNALIAGYMKE-GEIGVAEDLFERMEHRNIVSWTAMISGYTQNGFAEQALGL 226

Query: 59  FDFFQRLPIKDTASWNTMIS---GFVQKKNMAKARDLF-----LAMPEKNSVSWSAMISG 110
           FD   +   +   +W T++S      Q   + + R +      + +   +SV  +A+   
Sbjct: 227 FDEMLQDGSEMKPNWVTIVSVLPACAQSAALERGRRIHDFANGIGLHLNSSVQ-TALAGM 285

Query: 111 YIECGQLDKAVELFKVAPV--KSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGI 168
           Y +C  L +A   F +     K+++AW  MI+ Y   G        + + +   M+  G+
Sbjct: 286 YAKCYSLVEARCCFDMIAQNGKNLIAWNTMITAYASHGC-----GVEAVSIFENMLRAGV 340

Query: 169 RPNASSLSSVLLGCSHLSSLQLG 191
           +P+A +   +L GCSH   +  G
Sbjct: 341 QPDAVTFMGLLSGCSHSGLIDAG 363


>gi|225459736|ref|XP_002284744.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera]
          Length = 758

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 227/585 (38%), Positives = 338/585 (57%), Gaps = 53/585 (9%)

Query: 7   VNWNSVLAGFAKQRGKLKDAQELF----DKIPQPDVVSYNIMLSCIL---LNSDDVVAAF 59
           V+W++++A +A+Q G + +A+ LF    D   QP+++S+N M++      L S+ V+   
Sbjct: 181 VSWSALVAAYARQ-GCVDEAKRLFSEMGDSGVQPNLISWNGMIAGFNHSGLYSEAVLMFL 239

Query: 60  DFFQRLPIKDTASWNT---------------MISGFVQKKNM------------------ 86
           D   R    D  + ++               +I G+V K+ +                  
Sbjct: 240 DMHLRGFEPDGTTISSVLPAVGDLEDLVMGILIHGYVIKQGLVSDKCVSSALIDMYGKCS 299

Query: 87  --AKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVK----SVVAWTAMIS 140
             ++   +F  M   +  S +A I G    GQ++ ++ LF+    +    +VV+WT+MI+
Sbjct: 300 CTSEMSQVFDQMDHMDVGSCNAFIFGLSRNGQVESSLRLFRQLKDQGMELNVVSWTSMIA 359

Query: 141 GYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK 200
                   +N    + L+L R M   G++PN+ ++  +L  C ++++L  GK  H    +
Sbjct: 360 CC-----SQNGRDIEALELFREMQIAGVKPNSVTIPCLLPACGNIAALMHGKAAHCFSLR 414

Query: 201 SPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRL 260
             +  D    + LI MY KCG ++ +   F  I  K++V WNA+I+GYA HGK ++A+ +
Sbjct: 415 RGISTDVYVGSALIDMYAKCGRIQASRICFDGIPTKNLVCWNAVIAGYAMHGKAKEAMEI 474

Query: 261 FDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLG 320
           FD M+  G KPD I+F  +L AC+ +GL + G  YF+SM + YGI A+ +HY CMV LL 
Sbjct: 475 FDLMQRSGQKPDIISFTCVLSACSQSGLTEEGSYYFNSMSSKYGIEARVEHYACMVTLLS 534

Query: 321 RAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYV 380
           RAGKL +A  +I++MP  P   ++G LLS+CRVH  + L E AA  LF L P+N  G Y+
Sbjct: 535 RAGKLEQAYAMIRRMPVNPDACVWGALLSSCRVHNNVSLGEVAAEKLFELEPSNP-GNYI 593

Query: 381 QLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHE 440
            L+NIYA+   W++V R+R  MK   + K PG SWIEV   VH   +GD+ HP++  I E
Sbjct: 594 LLSNIYASKGMWNEVNRVRDMMKNKGLRKNPGCSWIEVKNKVHMLLAGDKSHPQMTQIIE 653

Query: 441 KLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFK 500
           KL +L   MK  GY P++ F L  V E+ KEQ+L  HSEKLA+ FGL+  P G P++V K
Sbjct: 654 KLDKLSMEMKKLGYFPEINFVLQDVEEQDKEQILCGHSEKLAVVFGLLNTPPGYPLQVIK 713

Query: 501 NLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           NLR+CGDCH   K+IS+ E+REI VRDT RFHHFK+G CSCGDYW
Sbjct: 714 NLRICGDCHVVIKFISSFERREIFVRDTNRFHHFKEGACSCGDYW 758



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 90/358 (25%), Positives = 161/358 (44%), Gaps = 72/358 (20%)

Query: 25  DAQELFDKIPQPDVVSYNI--------------------MLSCILLNSDDV--------- 55
           DA  + D +P+P+V S++                     ML+  L+  + V         
Sbjct: 66  DATLVLDLVPEPNVFSFSTLIYAFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKACA 125

Query: 56  ----------------VAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK 99
                           V+ FD        D+   ++++  +++   +  A  +F  M E 
Sbjct: 126 GLSALKPARQVHGIASVSGFD-------SDSFVQSSLVHMYIKCNQIRDAHRVFDRMFEP 178

Query: 100 NSVSWSAMISGYIECGQLDKAVELFK------VAPVKSVVAWTAMISGYMKFGYVENSWA 153
           + VSWSA+++ Y   G +D+A  LF       V P  ++++W  MI+G+   G     ++
Sbjct: 179 DVVSWSALVAAYARQGCVDEAKRLFSEMGDSGVQP--NLISWNGMIAGFNHSGL----YS 232

Query: 154 EDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPL 213
           E  L  L M +  G  P+ +++SSVL     L  L +G  +H  V K  L  D    + L
Sbjct: 233 EAVLMFLDMHL-RGFEPDGTTISSVLPAVGDLEDLVMGILIHGYVIKQGLVSDKCVSSAL 291

Query: 214 ISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDS 273
           I MY KC    +  ++F ++   DV + NA I G +++G+ E +LRLF ++KD+GM+ + 
Sbjct: 292 IDMYGKCSCTSEMSQVFDQMDHMDVGSCNAFIFGLSRNGQVESSLRLFRQLKDQGMELNV 351

Query: 274 ITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAA-KPDHYT--CMVDLLGRAGKLVEA 328
           +++ +++  C+  G     ++ F  M     IA  KP+  T  C++   G    L+  
Sbjct: 352 VSWTSMIACCSQNGRDIEALELFREM----QIAGVKPNSVTIPCLLPACGNIAALMHG 405



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 54/195 (27%), Positives = 101/195 (51%), Gaps = 5/195 (2%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI 164
           + ++S Y        A  +  + P  +V +++ +I  + KF    ++     L     M+
Sbjct: 52  TKLLSHYANNMCFADATLVLDLVPEPNVFSFSTLIYAFSKFHQFHHA-----LSTFSQML 106

Query: 165 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 224
             G+ P+   L S +  C+ LS+L+  +QVH +   S    D+   + L+ MY KC  + 
Sbjct: 107 TRGLMPDNRVLPSAVKACAGLSALKPARQVHGIASVSGFDSDSFVQSSLVHMYIKCNQIR 166

Query: 225 DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 284
           DA ++F  +   DVV+W+A+++ YA+ G  ++A RLF +M D G++P+ I++  ++   N
Sbjct: 167 DAHRVFDRMFEPDVVSWSALVAAYARQGCVDEAKRLFSEMGDSGVQPNLISWNGMIAGFN 226

Query: 285 HAGLVDLGIQYFDSM 299
           H+GL    +  F  M
Sbjct: 227 HSGLYSEAVLMFLDM 241



 Score = 43.9 bits (102), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 4/120 (3%)

Query: 174 SLSSVLLGC--SHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFL 231
           S+   +  C  S  +SL   +Q H  + K+ L  DT   T L+S Y       DA  +  
Sbjct: 13  SVQHTIFNCLNSTTASLSQTRQAHAHILKTGLFNDTHLATKLLSHYANNMCFADATLVLD 72

Query: 232 EIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDL 291
            +   +V +++ +I  +++  +   AL  F +M   G+ PD+    + + AC  AGL  L
Sbjct: 73  LVPEPNVFSFSTLIYAFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKAC--AGLSAL 130



 Score = 39.7 bits (91), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 31/48 (64%), Gaps = 5/48 (10%)

Query: 3   VKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQ----PDVVSYNIMLS 46
            K  V WN+V+AG+A   GK K+A E+FD + +    PD++S+  +LS
Sbjct: 449 TKNLVCWNAVIAGYA-MHGKAKEAMEIFDLMQRSGQKPDIISFTCVLS 495


>gi|297802258|ref|XP_002869013.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314849|gb|EFH45272.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 693

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 223/583 (38%), Positives = 329/583 (56%), Gaps = 48/583 (8%)

Query: 3   VKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFF 62
           V   V WN +L  +AK  G L DA+++FD++P+ DV S+N+M++        +  A + F
Sbjct: 119 VPGIVIWNRILGMYAKC-GSLVDARKVFDEMPERDVCSWNVMVNG-YAEVGLLEEARNLF 176

Query: 63  QRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP------------------------- 97
             +P +D+ SW  M++G+V+K    +A  L+  M                          
Sbjct: 177 DEMPERDSYSWTAMVTGYVKKDQPEEALVLYSLMQRVPNSKPNIFTVSSAVAAAAAIKCI 236

Query: 98  ---------------EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGY 142
                          + + V WS+++  Y +CG +D+A  +F     K VV+WT+MI  Y
Sbjct: 237 RRGKEIHGHIVRAGLDSDEVLWSSLMDMYGKCGCIDEARNIFDKIIDKDVVSWTSMIDRY 296

Query: 143 MKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSP 202
            K     + W E G  L   +IG   RPN  + S VL  C+ L++ +LG+QVH  + +  
Sbjct: 297 FK----SSRWRE-GFSLFSELIGSCERPNEYTFSGVLNACADLTTEELGRQVHGYMTRVG 351

Query: 203 LCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFD 262
               + A + LI MY KCG++E A  +     + D+V+  ++I GYAQ+GK ++AL+ FD
Sbjct: 352 FDPYSFASSSLIDMYTKCGNIESARHVVDGCPKPDLVSLTSLIGGYAQNGKPDEALKYFD 411

Query: 263 KMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRA 322
            +   G KPD +TFV +L AC HAGLV+ G+++F S+   + +    DHYTC+VDLL R+
Sbjct: 412 LLLKSGTKPDHVTFVNVLSACTHAGLVEKGLEFFYSITEKHDLTHTSDHYTCLVDLLARS 471

Query: 323 GKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQL 382
           G+  +   ++ +MP KP   ++ ++L  C  +  +DLAE AA  LF + P N    YV +
Sbjct: 472 GRFEQLKSVLSEMPMKPSKFLWASVLGGCSTYGNIDLAEEAAQELFKIEPENPV-TYVTM 530

Query: 383 ANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKL 442
           ANIYAA  KW++  ++R  M+E  + K PG SW E+    H F + D  HP    I E L
Sbjct: 531 ANIYAAAGKWEEEGKMRKRMQEIGITKKPGSSWTEIKRKRHVFIAADTSHPMYNQIIEFL 590

Query: 443 KELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNL 502
            EL K+MK  GYVP     LH V +E KE+ L++HSEKLA+AF ++    GT I+VFKNL
Sbjct: 591 GELRKKMKEEGYVPATSLVLHDVEDEQKEENLVYHSEKLAVAFAILSTEEGTAIKVFKNL 650

Query: 503 RVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           R C DCH A K+IS I KR+I +RD+TRFH F++G CSC DYW
Sbjct: 651 RSCVDCHSAIKFISKITKRKITIRDSTRFHCFENGQCSCRDYW 693



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/128 (35%), Positives = 74/128 (57%), Gaps = 7/128 (5%)

Query: 156 GLKLLR---MMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTP 212
           G KLLR    ++G   +P AS+  +++  CS   +L+ GK+VH+ +  S           
Sbjct: 68  GQKLLREAVQLLGRAKKPPASTYCNLIQVCSQTRALEEGKKVHEHIRTSGFVPGIVIWNR 127

Query: 213 LISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPD 272
           ++ MY KCG L DA K+F E+  +DV +WN M++GYA+ G  E+A  LFD+M +     D
Sbjct: 128 ILGMYAKCGSLVDARKVFDEMPERDVCSWNVMVNGYAEVGLLEEARNLFDEMPER----D 183

Query: 273 SITFVALL 280
           S ++ A++
Sbjct: 184 SYSWTAMV 191


>gi|312190418|gb|ADQ43217.1| pentatricopeptide repeat [Eutrema parvulum]
          Length = 616

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 211/479 (44%), Positives = 302/479 (63%), Gaps = 8/479 (1%)

Query: 69  DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAP 128
           D  + N++I+ +    N   A  LF  + E ++VSW+++I GY++ G++D A+ LF+  P
Sbjct: 144 DIYAVNSLINSYAVTGNFKHAHLLFDRIQEPDAVSWNSVIKGYVKAGEMDMALTLFRKMP 203

Query: 129 VKS-VVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSS 187
            K+  ++WT MISGY++ G       ++ L+L   M    + P+  SL+S L  CS L +
Sbjct: 204 EKNNAISWTTMISGYVQAGM-----NKEALQLFHEMQNSNVPPDNVSLASALSACSQLGA 258

Query: 188 LQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISG 247
           L+ GK +H    K+    D+     LI MY KCG++E+A  +F  ++ K V  W A+ISG
Sbjct: 259 LEQGKWIHSYANKTRTRIDSVLCCVLIDMYAKCGEMEEALGVFKNMKTKSVQVWTALISG 318

Query: 248 YAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAA 307
           YA HG G +A+  F +M++ G+KP++ITF A+L AC++ GLV+ G   F+++  DY +  
Sbjct: 319 YAYHGLGREAISKFLEMQNMGVKPNAITFTAVLTACSYTGLVEEGKSVFNTIERDYNLKP 378

Query: 308 KPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNL 367
             +HY CMVDLLGRAG L EA   I+KMP KP   I+G+LL AC++HK ++L E     L
Sbjct: 379 TIEHYGCMVDLLGRAGLLNEANRFIQKMPLKPNAVIWGSLLKACQIHKNIELGEKIGEIL 438

Query: 368 FNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRS 427
             ++ +N  G YV +ANI+A  KKWD  A  R  M+E  VVK+PG S I +    HEF +
Sbjct: 439 IEMD-SNHGGRYVHMANIHAMGKKWDKAAETRRLMREQGVVKVPGCSAISLEGTTHEFLA 497

Query: 428 GDRVHPELVSIHEKLKELEKRMKLAGYVPDLE-FALHAVGEEVKEQLLLFHSEKLAIAFG 486
           GDR H E+  I  K + + ++++  GYVP+LE   L  V +E KE ++  HSEKLAI +G
Sbjct: 498 GDRSHAEIQEIRTKWRFVRRKLEENGYVPELEDMLLDLVDDEEKEAIVHQHSEKLAITYG 557

Query: 487 LIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           L+K   GT IR+ KNLRVC DCH+    IS I KR+I++RD TRFHHFKDG CSCGDYW
Sbjct: 558 LMKTKPGTTIRIMKNLRVCKDCHKVMNLISKIYKRDIVMRDRTRFHHFKDGKCSCGDYW 616



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 84/323 (26%), Positives = 135/323 (41%), Gaps = 80/323 (24%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
           NS++  +A   G  K A  LFD+I +PD VS+N ++    + + ++  A   F+++P K+
Sbjct: 149 NSLINSYAVT-GNFKHAHLLFDRIQEPDAVSWNSVIKG-YVKAGEMDMALTLFRKMPEKN 206

Query: 70  TA-SWNTMISGFVQKKNMAKARDLFLAMPEKN---------------------------- 100
            A SW TMISG+VQ     +A  LF  M   N                            
Sbjct: 207 NAISWTTMISGYVQAGMNKEALQLFHEMQNSNVPPDNVSLASALSACSQLGALEQGKWIH 266

Query: 101 -----------SVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVE 149
                      SV    +I  Y +CG++++A+ +FK    KSV  WTA+ISGY   G   
Sbjct: 267 SYANKTRTRIDSVLCCVLIDMYAKCGEMEEALGVFKNMKTKSVQVWTALISGYAYHGL-- 324

Query: 150 NSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTA 209
                + +     M  +G++PNA + ++VL  CS+   ++ GK V   + +         
Sbjct: 325 ---GREAISKFLEMQNMGVKPNAITFTAVLTACSYTGLVEEGKSVFNTIERD------YN 375

Query: 210 LTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGM 269
           L P I  Y                          M+    + G   +A R   KM    +
Sbjct: 376 LKPTIEHY------------------------GCMVDLLGRAGLLNEANRFIQKMP---L 408

Query: 270 KPDSITFVALLLACNHAGLVDLG 292
           KP+++ + +LL AC     ++LG
Sbjct: 409 KPNAVIWGSLLKACQIHKNIELG 431



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 71/274 (25%), Positives = 117/274 (42%), Gaps = 45/274 (16%)

Query: 135 WTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQV 194
           W  MI G       + S     L L   M+      NA +   +L  CS+LS+ Q   Q+
Sbjct: 78  WNLMIRGLSCSDQPDRS-----LLLYHRMLCCSAPHNAYTFPFLLKACSNLSAFQETTQI 132

Query: 195 HQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNA----------- 243
           H  + K     D  A+  LI+ Y   G+ + A  LF  IQ  D V+WN+           
Sbjct: 133 HAHITKFGYGHDIYAVNSLINSYAVTGNFKHAHLLFDRIQEPDAVSWNSVIKGYVKAGEM 192

Query: 244 ---------------------MISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA 282
                                MISGY Q G  ++AL+LF +M++  + PD+++  + L A
Sbjct: 193 DMALTLFRKMPEKNNAISWTTMISGYVQAGMNKEALQLFHEMQNSNVPPDNVSLASALSA 252

Query: 283 CNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTC--MVDLLGRAGKLVEAVDLIKKMPFKPQ 340
           C+  G ++ G ++  S  N      + D   C  ++D+  + G++ EA+ + K M  K  
Sbjct: 253 CSQLGALEQG-KWIHSYANK--TRTRIDSVLCCVLIDMYAKCGEMEEALGVFKNMKTK-S 308

Query: 341 PAIFGTLLSACRVH--KRLDLAEFAAMNLFNLNP 372
             ++  L+S    H   R  +++F  M    + P
Sbjct: 309 VQVWTALISGYAYHGLGREAISKFLEMQNMGVKP 342



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 78/190 (41%), Gaps = 31/190 (16%)

Query: 192 KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLE-IQRKDVVTWNAMISGYAQ 250
           KQ+H  + KS L +D  A+T  +S          A  +F     R D   WN MI G + 
Sbjct: 28  KQIHARMLKSGLLQDPYAMTKFLSFCLSSSFSSYAHDVFFNGFDRPDTFLWNLMIRGLSC 87

Query: 251 HGKGEKALRLFDKMKDEGMKPDSITFVALLLACN-----------HAGLVDLG----IQY 295
             + +++L L+ +M       ++ TF  LL AC+           HA +   G    I  
Sbjct: 88  SDQPDRSLLLYHRMLCCSAPHNAYTFPFLLKACSNLSAFQETTQIHAHITKFGYGHDIYA 147

Query: 296 FDSMVNDYGIAAKPDHYTCMVDLLG---------------RAGKLVEAVDLIKKMPFKPQ 340
            +S++N Y +     H   + D +                +AG++  A+ L +KMP K  
Sbjct: 148 VNSLINSYAVTGNFKHAHLLFDRIQEPDAVSWNSVIKGYVKAGEMDMALTLFRKMPEKNN 207

Query: 341 PAIFGTLLSA 350
              + T++S 
Sbjct: 208 AISWTTMISG 217


>gi|115463097|ref|NP_001055148.1| Os05g0305300 [Oryza sativa Japonica Group]
 gi|113578699|dbj|BAF17062.1| Os05g0305300 [Oryza sativa Japonica Group]
          Length = 852

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 226/596 (37%), Positives = 337/596 (56%), Gaps = 69/596 (11%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFF-----QR 64
           N+++  +AK  G +++A ++F+ +   DVVS+N M++     S +  AAF+ F     + 
Sbjct: 266 NALIDAYAKC-GLMENAVKVFNMMEFKDVVSWNAMVAG-YSQSGNFKAAFELFKNMRKEN 323

Query: 65  LPIKDTASWNTMISGFVQKKNMAKARDLFLAM---------------------------- 96
           +P+ D  +W  +I+G+ Q+    +A ++F  M                            
Sbjct: 324 IPL-DMVTWTAVIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQG 382

Query: 97  ---------------------PEKNSVSWSAMISGYIECGQLDKAVELFKVAPV--KSVV 133
                                 +++ + ++A+I  Y +C     A  +F   P+  ++VV
Sbjct: 383 MEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVV 442

Query: 134 AWTAMISGYMKFGYVENSWAEDGLKLLRMMIG--LGIRPNASSLSSVLLGCSHLSSLQLG 191
            WT MI G+ ++G      + D LKL   MI    G+ PNA ++S +L+ C+HL+++++G
Sbjct: 443 TWTVMIGGHAQYGD-----SNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIG 497

Query: 192 KQVHQLVFKSPLCKDTTALTP--LISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYA 249
           KQ+H  V +      +       LI+MY KCGD++ A  +F  + +K  ++W +M++GY 
Sbjct: 498 KQIHAYVLRHHQYDSSAYFVANCLINMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYG 557

Query: 250 QHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKP 309
            HG+G +AL +FDKM+  G  PD ITF+ +L AC+H G+VD G+ YFDSM  DYG+  + 
Sbjct: 558 MHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRA 617

Query: 310 DHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFN 369
           +HY   +DLL R G+L +A   +K MP +P   ++  LLSACRVH  ++LAE A   L  
Sbjct: 618 EHYAYAIDLLARFGRLDKAWKTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKLVE 677

Query: 370 LNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGD 429
           +N  N  G Y  ++NIYA   +W DVARIR  MK++ + K PG SW++       F  GD
Sbjct: 678 MNAEND-GSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQGQKGTASFFVGD 736

Query: 430 RVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIK 489
           R HP    I+  L+ L  R+K  GYVP+  FALH V EE K  LL+ HSEKLA+A+GL+ 
Sbjct: 737 RSHPLSPQIYALLESLIDRIKAMGYVPETNFALHDVDEEEKNNLLVEHSEKLALAYGLLT 796

Query: 490 VPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
              G PIR+ KNLRVCGDCH A  YIS I   EI+VRD +RFHHFK+G+CSCG YW
Sbjct: 797 TFPGCPIRITKNLRVCGDCHSAFTYISKIVDHEIVVRDPSRFHHFKNGSCSCGGYW 852



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 119/439 (27%), Positives = 193/439 (43%), Gaps = 75/439 (17%)

Query: 3   VKTTVNWNSVLAGFAKQRGKLKDAQELFDKIP----------QPDVVS-YNIMLSCILLN 51
           +   ++WNS+++   K       A +LF K+           + D++S  NI+ +C  L 
Sbjct: 183 IDDVISWNSIVSAHVKSSNAWT-ALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLK 241

Query: 52  SDDVVAAF--DFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMIS 109
           +         +  +     D    N +I  + +   M  A  +F  M  K+ VSW+AM++
Sbjct: 242 AVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVA 301

Query: 110 GYIECGQLDKAVELFKVAPVKSV----VAWTAMISGYMKFGYVENSWAEDGLKLLRMMIG 165
           GY + G    A ELFK    +++    V WTA+I+GY + G      + + L + R MI 
Sbjct: 302 GYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRG-----CSHEALNVFRQMIF 356

Query: 166 LGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLC----------KDTTALTPLIS 215
            G  PN  ++ SVL  C+ L +   G ++H    K+ L           +D      LI 
Sbjct: 357 SGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALID 416

Query: 216 MYCKCGDLEDACKLF--LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE--GMKP 271
           MY KC   + A  +F  + ++ ++VVTW  MI G+AQ+G    AL+LF +M  E  G+ P
Sbjct: 417 MYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAP 476

Query: 272 DSITFVALLLACNHAGLVDLGIQ---------------YF--DSMVNDYGIAAKPD---- 310
           ++ T   +L+AC H   + +G Q               YF  + ++N Y      D    
Sbjct: 477 NAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLINMYSKCGDVDTARH 536

Query: 311 -----------HYTCMVDLLGRAGKLVEAVDLIKKM---PFKPQPAIFGTLLSACRVHKR 356
                       +T M+   G  G+  EA+D+  KM    F P    F  +L AC     
Sbjct: 537 VFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGM 596

Query: 357 LD--LAEFAAMNL-FNLNP 372
           +D  L+ F +M+  + L P
Sbjct: 597 VDQGLSYFDSMSADYGLTP 615



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 59/210 (28%), Positives = 107/210 (50%), Gaps = 10/210 (4%)

Query: 98  EKNSVSWSAMISGYIECGQLDKAVELFKVAP---VKSVVAWTAMISGYMKFGYVENSW-A 153
           E N    +A+++ Y  CG L++A  +F       +  V++W +++S ++K     N+W A
Sbjct: 149 ESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVK---SSNAWTA 205

Query: 154 EDGLKLLRMMIG---LGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTAL 210
            D    + +++       R +  S+ ++L  C  L ++   K+VH    ++    D    
Sbjct: 206 LDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVG 265

Query: 211 TPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMK 270
             LI  Y KCG +E+A K+F  ++ KDVV+WNAM++GY+Q G  + A  LF  M+ E + 
Sbjct: 266 NALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIP 325

Query: 271 PDSITFVALLLACNHAGLVDLGIQYFDSMV 300
            D +T+ A++   +  G     +  F  M+
Sbjct: 326 LDMVTWTAVIAGYSQRGCSHEALNVFRQMI 355



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 60/243 (24%), Positives = 110/243 (45%), Gaps = 15/243 (6%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI 164
           + +++ Y+ CG  D A+ + +       V W  +I  ++K G ++++     + +   M+
Sbjct: 55  TGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSA-----INVSCRML 109

Query: 165 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 224
             G R +  +L  VL  C  L S + G   H L+  +    +      L++MY +CG LE
Sbjct: 110 RAGTRLDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLE 169

Query: 225 DACKLFLEIQRK---DVVTWNAMISGYAQHGKGEKALRLFDKM------KDEGMKPDSIT 275
           +A  +F EI ++   DV++WN+++S + +      AL LF KM      K    + D I+
Sbjct: 170 EASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIIS 229

Query: 276 FVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335
            V +L AC     V    +   + + + G          ++D   + G +  AV +   M
Sbjct: 230 IVNILPACGSLKAVPQTKEVHGNAIRN-GTFLDVFVGNALIDAYAKCGLMENAVKVFNMM 288

Query: 336 PFK 338
            FK
Sbjct: 289 EFK 291


>gi|224091072|ref|XP_002309169.1| predicted protein [Populus trichocarpa]
 gi|222855145|gb|EEE92692.1| predicted protein [Populus trichocarpa]
          Length = 619

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 215/465 (46%), Positives = 284/465 (61%), Gaps = 13/465 (2%)

Query: 88  KARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPV-------KSVVAWTAMIS 140
            A  +F  +PEKN  +W+A+ISGYI  G+  +A+++F+ A         K +V+W++MI 
Sbjct: 161 NAFKVFDDIPEKNVAAWTAIISGYIGVGKCREAIDMFRRACSVFDGMLEKDIVSWSSMIQ 220

Query: 141 GYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK 200
           GY       N   ++ L L   M+  G RP+  ++  VL  C+ L +L+LG     L+ +
Sbjct: 221 GY-----ASNGLPKEALDLFFKMLNEGFRPDCYAMVGVLCACARLGALELGNWASNLMDR 275

Query: 201 SPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRL 260
           +    +    T LI MY KCG ++ A ++F  +++KD+V WNA ISG A  G  + A  L
Sbjct: 276 NEFLGNPVLGTALIDMYAKCGRMDSAWEVFRGMRKKDIVVWNAAISGLAMSGHVKAAFGL 335

Query: 261 FDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLG 320
           F +M+  G++PD  TFV LL AC HAGLVD G QYF+SM   + +  + +HY CMVDLLG
Sbjct: 336 FGQMEKSGIEPDGNTFVGLLCACTHAGLVDEGRQYFNSMERVFTLTPEIEHYGCMVDLLG 395

Query: 321 RAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYV 380
           RAG L EA  L+K MP +    ++G LL  CR+H+   L E     L  L P+N+ G YV
Sbjct: 396 RAGFLDEAHQLVKSMPMEANAIVWGALLGGCRLHRDTQLVEGVLKQLIALEPSNS-GNYV 454

Query: 381 QLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHE 440
            L+NIY+A  KW+D A+IR  M E  + K+PGYSWIEV  VVHEF  GD  HP    I+ 
Sbjct: 455 LLSNIYSASHKWEDAAKIRSIMSERGIKKVPGYSWIEVDGVVHEFLVGDTSHPLSEKIYA 514

Query: 441 KLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFK 500
           KL EL K +K +GYVP  ++ L  + EE KE  +  HSEKLAIAFGLI       IRV K
Sbjct: 515 KLGELVKDLKASGYVPTTDYVLFDIEEEEKEHFIGCHSEKLAIAFGLISTAPNDKIRVVK 574

Query: 501 NLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           NLRVCGDCH A K+IS    REIIVRD  RFH F DG+CSC DYW
Sbjct: 575 NLRVCGDCHEAIKHISRFTGREIIVRDNNRFHCFNDGSCSCKDYW 619



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 70/272 (25%), Positives = 121/272 (44%), Gaps = 46/272 (16%)

Query: 143 MKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSP 202
           M  G V N   ++ +++   M   G+ P++ +   +L  C+ L   +LG ++H LV K+ 
Sbjct: 79  MIHGLVLNDSFQESIEIYHSMRKEGLSPDSFTFPFLLKACARLLDSKLGIKLHGLVVKAG 138

Query: 203 LCKDTTALTPLISMYCKCGDLEDACKLFLEIQ---------------------------- 234
              D    T L+S+Y KCG +++A K+F +I                             
Sbjct: 139 CESDAFVNTSLVSLYGKCGFIDNAFKVFDDIPEKNVAAWTAIISGYIGVGKCREAIDMFR 198

Query: 235 ----------RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 284
                      KD+V+W++MI GYA +G  ++AL LF KM +EG +PD    V +L AC 
Sbjct: 199 RACSVFDGMLEKDIVSWSSMIQGYASNGLPKEALDLFFKMLNEGFRPDCYAMVGVLCACA 258

Query: 285 HAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKP----Q 340
             G ++LG  +  ++++       P   T ++D+  + G++  A ++ + M  K      
Sbjct: 259 RLGALELG-NWASNLMDRNEFLGNPVLGTALIDMYAKCGRMDSAWEVFRGMRKKDIVVWN 317

Query: 341 PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNP 372
            AI G  +S    H +     F  M    + P
Sbjct: 318 AAISGLAMSG---HVKAAFGLFGQMEKSGIEP 346



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 78/160 (48%), Gaps = 5/160 (3%)

Query: 185 LSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAM 244
            +SL+  K VH  + +  L +D+  L  ++      G+   + ++F + +  ++  +N M
Sbjct: 20  FNSLKHLKHVHAALLRLGLDEDSYLLNKVLRFSFNFGNTNYSHRIFHQTKEPNIFLFNTM 79

Query: 245 ISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVD--LGIQYFDSMVND 302
           I G   +   ++++ ++  M+ EG+ PDS TF  LL AC  A L+D  LGI+    +V  
Sbjct: 80  IHGLVLNDSFQESIEIYHSMRKEGLSPDSFTFPFLLKAC--ARLLDSKLGIK-LHGLVVK 136

Query: 303 YGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPA 342
            G  +     T +V L G+ G +  A  +   +P K   A
Sbjct: 137 AGCESDAFVNTSLVSLYGKCGFIDNAFKVFDDIPEKNVAA 176


>gi|296083568|emb|CBI23560.3| unnamed protein product [Vitis vinifera]
          Length = 497

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 201/486 (41%), Positives = 305/486 (62%), Gaps = 8/486 (1%)

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAK-ARDLFLAMPEKN-SVSWSAMISGYIECGQLDK 119
           F+++P  +  SW  +I+ +VQ     K A +LF  M   + +   +++IS Y   G+++ 
Sbjct: 18  FEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISASVNCVGNSLISMYARSGRMED 77

Query: 120 AVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVL 179
           A + F +   K++V++ A++ GY K     N  +E+   L   +   GI  +A + +S+L
Sbjct: 78  ARKAFDILFEKNLVSYNAIVDGYAK-----NLKSEEAFLLFNEIADTGIGISAFTFASLL 132

Query: 180 LGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVV 239
            G + + ++  G+Q+H  + K     +      LISMY +CG++E A ++F E++ ++V+
Sbjct: 133 SGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVI 192

Query: 240 TWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSM 299
           +W +MI+G+A+HG   +AL +F KM + G KP+ IT+VA+L AC+H G++  G ++F+SM
Sbjct: 193 SWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSM 252

Query: 300 VNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDL 359
             ++GI  + +HY CMVDLLGR+G LVEA++ I  MP      ++ TLL ACRVH   +L
Sbjct: 253 YKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTEL 312

Query: 360 AEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVG 419
              AA  +    P + A  Y+ L+N++A+  +W DV +IR SMKE N++K  G SWIEV 
Sbjct: 313 GRHAAEMILEQEPDDPAA-YILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWIEVE 371

Query: 420 TVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSE 479
             VH F  G+  HP+   I+++L +L  ++K  GY+PD +F LH + EE KEQ L  HSE
Sbjct: 372 NRVHRFHVGETSHPQAWQIYQELDQLASKIKEMGYIPDTDFVLHDIEEEQKEQFLFQHSE 431

Query: 480 KLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTC 539
           K+A+AFGLI      PIR+FKNLRVCGDCH A KYIS    REI+VRD+ RFHH K+G C
Sbjct: 432 KIAVAFGLISTSQSKPIRIFKNLRVCGDCHTAIKYISMATGREIVVRDSNRFHHIKNGVC 491

Query: 540 SCGDYW 545
           SC DYW
Sbjct: 492 SCNDYW 497



 Score = 41.6 bits (96), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 35/53 (66%), Gaps = 4/53 (7%)

Query: 216 MYCKC---GDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEK-ALRLFDKM 264
           MY KC   G ++D+ K+F ++   +V++W A+I+ Y Q G+ +K A+ LF KM
Sbjct: 1   MYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKM 53



 Score = 40.8 bits (94), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 33/192 (17%), Positives = 84/192 (43%), Gaps = 12/192 (6%)

Query: 54  DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMIS 109
           ++ AAF  F  +  ++  SW +MI+GF +     +A ++F  M E     N +++ A++S
Sbjct: 175 NIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLS 234

Query: 110 GYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGL--KLLRMMIGLG 167
                G + +  + F      S+     ++     +  + +     GL  + +  +  + 
Sbjct: 235 ACSHVGMISEGQKHF-----NSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMP 289

Query: 168 IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC 227
           +  +A    ++L  C    + +LG+   +++ +     D  A   L +++   G  +D  
Sbjct: 290 LMADALVWRTLLGACRVHGNTELGRHAAEMILEQEP-DDPAAYILLSNLHASAGQWKDVV 348

Query: 228 KLFLEIQRKDVV 239
           K+   ++ ++++
Sbjct: 349 KIRKSMKERNLI 360


>gi|225455746|ref|XP_002268440.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Vitis vinifera]
          Length = 881

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 231/620 (37%), Positives = 337/620 (54%), Gaps = 84/620 (13%)

Query: 4   KTTVNWNSVLAGFAKQRGK------LKDAQELFDKIPQPDVVSYNIMLSCIL-------- 49
           K  V+WNS++ G+A++         L+  Q    K+   +    N++  C+         
Sbjct: 268 KNIVSWNSMIGGYAREEDVCRTFYLLQKMQTEDAKMKADEFTILNVLPVCLERSELQSLK 327

Query: 50  ----------LNSDDVVA-AF--------------DFFQRLPIKDTASWNTMISGFVQKK 84
                     L S+++VA AF                F  +  K  +SWN ++ G+ Q  
Sbjct: 328 ELHGYSWRHGLQSNELVANAFIAAYTRCGALCSSERVFDLMDTKTVSSWNALLCGYAQNS 387

Query: 85  NMAKARDLFLAMPEKN-------------------SVSWSAMISG--------------- 110
           +  KA DL+L M +                     S+ +   I G               
Sbjct: 388 DPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFALRNGLAVDPFIGI 447

Query: 111 -----YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIG 165
                YI CG+   A  LF     +S+V+W  MI+GY      +N   ++ + L R M+ 
Sbjct: 448 SLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGY-----SQNGLPDEAINLFRQMLS 502

Query: 166 LGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLED 225
            GI+P   ++  V   CS LS+L+LGK++H    K+ L +D    + +I MY K G +  
Sbjct: 503 DGIQPYEIAIMCVCGACSQLSALRLGKELHCFALKAHLTEDIFVSSSIIDMYAKGGCIGL 562

Query: 226 ACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNH 285
           + ++F  ++ KDV +WN +I+GY  HG+G++AL LF+KM   G+KPD  TF  +L+AC+H
Sbjct: 563 SQRIFDRLREKDVASWNVIIAGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGILMACSH 622

Query: 286 AGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFG 345
           AGLV+ G++YF+ M+N + I  K +HYTC+VD+LGRAG++ +A+ LI++MP  P   I+ 
Sbjct: 623 AGLVEDGLEYFNQMLNLHNIEPKLEHYTCVVDMLGRAGRIDDALRLIEEMPGDPDSRIWS 682

Query: 346 TLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKEN 405
           +LLS+CR+H  L L E  A  L  L P      YV ++N++A   KWDDV R+R  MK+ 
Sbjct: 683 SLLSSCRIHGNLGLGEKVANKLLELEPEKPEN-YVLISNLFAGSGKWDDVRRVRGRMKDI 741

Query: 406 NVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAV 465
            + K  G SWIEVG  VH F  GD + PEL  + E  + LE ++   GY PD    LH +
Sbjct: 742 GLQKDAGCSWIEVGGKVHNFLIGDEMLPELEEVRETWRRLEVKISSIGYTPDTGSVLHDL 801

Query: 466 GEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIV 525
            EE K  +L  HSEKLAI+FGL+    G P+RV+KNLR+CGDCH A K+IS +  R+I+V
Sbjct: 802 EEEDKIGILRGHSEKLAISFGLLNTAKGLPVRVYKNLRICGDCHNAAKFISKVVNRDIVV 861

Query: 526 RDTTRFHHFKDGTCSCGDYW 545
           RD  RFHHF+DG CSCGDYW
Sbjct: 862 RDNKRFHHFRDGICSCGDYW 881



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 149/293 (50%), Gaps = 31/293 (10%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPI-- 67
           N+++A + K  G +++A ++F+ +P+ ++VS+N ++ C    +  +  +F+ F+ + +  
Sbjct: 140 NALIAMYGKC-GLVEEAVKVFEHMPERNLVSWNSII-CGFSENGFLQESFNAFREMLVGE 197

Query: 68  ----KDTASWNTMISGFVQKKNMAKARDLF-----LAMPEKNSVSWSAMISGYIECGQLD 118
                D A+  T++     ++++ K   +      L + E+  V+ +++I  Y +C  L 
Sbjct: 198 ESFVPDVATLVTVLPVCAGEEDIEKGMAVHGLAVKLGLNEELMVN-NSLIDMYSKCRFLS 256

Query: 119 KAVELFKVAPVKSVVAWTAMISGYMK-------FGYVENSWAEDGLKLLRMMIGLGIRPN 171
           +A  LF     K++V+W +MI GY +       F  ++    ED            ++ +
Sbjct: 257 EAQLLFDKNDKKNIVSWNSMIGGYAREEDVCRTFYLLQKMQTEDA----------KMKAD 306

Query: 172 ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFL 231
             ++ +VL  C   S LQ  K++H   ++  L  +       I+ Y +CG L  + ++F 
Sbjct: 307 EFTILNVLPVCLERSELQSLKELHGYSWRHGLQSNELVANAFIAAYTRCGALCSSERVFD 366

Query: 232 EIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 284
            +  K V +WNA++ GYAQ+    KAL L+ +M D G+ PD  T  +LLLAC+
Sbjct: 367 LMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACS 419



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 95/182 (52%), Gaps = 8/182 (4%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI 164
           + +I+ Y  CG    +  +F     K++  W A++S Y +     N   ED + +   +I
Sbjct: 38  TRIITMYSMCGSPSDSRMVFDKLRRKNLFQWNAIVSAYTR-----NELFEDAMSIFSELI 92

Query: 165 GLGI-RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDL 223
            +   +P+  +L  V+  C+ L  L LG+ +H +  K  L  D      LI+MY KCG +
Sbjct: 93  SVTEHKPDNFTLPCVIKACAGLLDLGLGQIIHGMATKMDLVSDVFVGNALIAMYGKCGLV 152

Query: 224 EDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKM--KDEGMKPDSITFVALLL 281
           E+A K+F  +  +++V+WN++I G++++G  +++   F +M   +E   PD  T V +L 
Sbjct: 153 EEAVKVFEHMPERNLVSWNSIICGFSENGFLQESFNAFREMLVGEESFVPDVATLVTVLP 212

Query: 282 AC 283
            C
Sbjct: 213 VC 214



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 74/295 (25%), Positives = 127/295 (43%), Gaps = 55/295 (18%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKI-----PQPDVVSYNIMLSCIL--------L 50
           K    WN++++ + +     +DA  +F ++      +PD    N  L C++        L
Sbjct: 63  KNLFQWNAIVSAYTRNE-LFEDAMSIFSELISVTEHKPD----NFTLPCVIKACAGLLDL 117

Query: 51  NSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISG 110
               ++        L + D    N +I+ + +   + +A  +F  MPE+N VSW+++I G
Sbjct: 118 GLGQIIHGMATKMDL-VSDVFVGNALIAMYGKCGLVEEAVKVFEHMPERNLVSWNSIICG 176

Query: 111 YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRP 170
           + E G L ++   F+            M+ G   F                        P
Sbjct: 177 FSENGFLQESFNAFR-----------EMLVGEESF-----------------------VP 202

Query: 171 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 230
           + ++L +VL  C+    ++ G  VH L  K  L ++      LI MY KC  L +A  LF
Sbjct: 203 DVATLVTVLPVCAGEEDIEKGMAVHGLAVKLGLNEELMVNNSLIDMYSKCRFLSEAQLLF 262

Query: 231 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMK--DEGMKPDSITFVALLLAC 283
            +  +K++V+WN+MI GYA+     +   L  KM+  D  MK D  T + +L  C
Sbjct: 263 DKNDKKNIVSWNSMIGGYAREEDVCRTFYLLQKMQTEDAKMKADEFTILNVLPVC 317



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 87/162 (53%), Gaps = 5/162 (3%)

Query: 178 VLLGCSHLSSLQLGKQVHQLVFKSP-LCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK 236
           +L  C     +++G+++H++V  S   C D    T +I+MY  CG   D+  +F +++RK
Sbjct: 4   LLQACGQRKDIEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRRK 63

Query: 237 DVVTWNAMISGYAQHGKGEKALRLFDKMKD-EGMKPDSITFVALLLACNHAGLVDLGI-Q 294
           ++  WNA++S Y ++   E A+ +F ++      KPD+ T   ++ AC  AGL+DLG+ Q
Sbjct: 64  NLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKAC--AGLLDLGLGQ 121

Query: 295 YFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 336
               M     + +       ++ + G+ G + EAV + + MP
Sbjct: 122 IIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKVFEHMP 163


>gi|307136183|gb|ADN34022.1| hypothetical protein [Cucumis melo subsp. melo]
          Length = 773

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 211/524 (40%), Positives = 312/524 (59%), Gaps = 45/524 (8%)

Query: 61  FFQRLPIKDTASWNTMISGFVQK----KNMAKARDLFLAMPEKNSVSWSA---------- 106
            F+ +P KD  SWNT+I+G  +     + +   R++  A  + +S + S+          
Sbjct: 256 IFEMMPEKDLVSWNTIIAGNARNGLYGETLTMVREMGGANLKPDSFTLSSVLPLIAENVD 315

Query: 107 -------------------------MISGYIECGQLDKAVELFKVAPVKSVVAWTAMISG 141
                                    +I  Y +C ++  +  +F +   +  ++W ++I+G
Sbjct: 316 ISKGKEIHGCSIRQGLDAEVYVASSLIDMYAKCTRVVDSYRVFTLLTERDGISWNSIIAG 375

Query: 142 YMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKS 201
                 V+N   ++GLK  R M+   I+P + S SS++  C+HL++L LGKQ+H  + ++
Sbjct: 376 C-----VQNGLFDEGLKFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRN 430

Query: 202 PLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLF 261
              ++    + L+ MY KCG++  A ++F  ++ +D+V+W AMI G A HG    A+ LF
Sbjct: 431 GFDENIFIASSLVDMYAKCGNIRTARQIFDRMRLRDMVSWTAMIMGCALHGHALDAIELF 490

Query: 262 DKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGR 321
           ++MK EG++P+ + F+A+L AC+HAGLVD   +YF+SM  D+GIA   +HY  + DLLGR
Sbjct: 491 EQMKTEGIEPNYVAFMAVLTACSHAGLVDEAWKYFNSMTLDFGIAPGVEHYAAVSDLLGR 550

Query: 322 AGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQ 381
           AG+L EA D I  MP  P  +++ TLLSACRVHK +D+AE  A  +  ++P N  G Y+ 
Sbjct: 551 AGRLEEAYDFICGMPIGPTGSVWATLLSACRVHKNVDMAEKVANRILEVDPKN-TGAYIL 609

Query: 382 LANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEK 441
           LANIY+A ++W + A+ R S++   + K P  SWIEV   V+ F +GD  HP    I E 
Sbjct: 610 LANIYSAARRWKEAAKWRASLRRTGIRKTPACSWIEVRNKVYAFMAGDESHPCYEKIREA 669

Query: 442 LKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKN 501
           ++ L + M+  GYVPD     H V EE K+ L+  HSE+LAI FG+I  P GT IRV KN
Sbjct: 670 MEVLMELMEKEGYVPDTSEVHHDVEEEQKKYLVCSHSERLAIVFGIINTPAGTTIRVTKN 729

Query: 502 LRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           LRVC DCH ATK+IS I  REI+VRD +RFHHFK+GTCSCGDYW
Sbjct: 730 LRVCTDCHTATKFISKIVGREIVVRDNSRFHHFKNGTCSCGDYW 773



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 69/275 (25%), Positives = 133/275 (48%), Gaps = 9/275 (3%)

Query: 117 LDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLS 176
           +D   ++F++ P K +V+W  +I+G  +     N    + L ++R M G  ++P++ +LS
Sbjct: 250 VDSVRKIFEMMPEKDLVSWNTIIAGNAR-----NGLYGETLTMVREMGGANLKPDSFTLS 304

Query: 177 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK 236
           SVL   +    +  GK++H    +  L  +    + LI MY KC  + D+ ++F  +  +
Sbjct: 305 SVLPLIAENVDISKGKEIHGCSIRQGLDAEVYVASSLIDMYAKCTRVVDSYRVFTLLTER 364

Query: 237 DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYF 296
           D ++WN++I+G  Q+G  ++ L+ F +M    +KP S +F +++ AC H   + LG Q  
Sbjct: 365 DGISWNSIIAGCVQNGLFDEGLKFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQ-L 423

Query: 297 DSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKR 356
              +   G        + +VD+  + G +  A  +  +M  +   + +  ++  C +H  
Sbjct: 424 HGYITRNGFDENIFIASSLVDMYAKCGNIRTARQIFDRMRLRDMVS-WTAMIMGCALHGH 482

Query: 357 -LDLAE-FAAMNLFNLNPANAAGCYVQLANIYAAM 389
            LD  E F  M    + P   A   V  A  +A +
Sbjct: 483 ALDAIELFEQMKTEGIEPNYVAFMAVLTACSHAGL 517



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 61/260 (23%), Positives = 100/260 (38%), Gaps = 81/260 (31%)

Query: 1   MNVKTTVNWNSVLAGFAKQR---GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSD---- 53
           M  K  V+WN+++AG A+       L   +E+     +PD  + + +L  I  N D    
Sbjct: 260 MPEKDLVSWNTIIAGNARNGLYGETLTMVREMGGANLKPDSFTLSSVLPLIAENVDISKG 319

Query: 54  ------------------------------DVVAAFDFFQRLPIKDTASWNTMISGFVQK 83
                                          VV ++  F  L  +D  SWN++I+G VQ 
Sbjct: 320 KEIHGCSIRQGLDAEVYVASSLIDMYAKCTRVVDSYRVFTLLTERDGISWNSIIAGCVQN 379

Query: 84  ----KNMAKARDLFLAMPEKNSVSWSAM---------------ISGYI------------ 112
               + +   R + +A  +  S S+S++               + GYI            
Sbjct: 380 GLFDEGLKFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFDENIFIA 439

Query: 113 --------ECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI 164
                   +CG +  A ++F    ++ +V+WTAMI G    G+     A D ++L   M 
Sbjct: 440 SSLVDMYAKCGNIRTARQIFDRMRLRDMVSWTAMIMGCALHGH-----ALDAIELFEQMK 494

Query: 165 GLGIRPNASSLSSVLLGCSH 184
             GI PN  +  +VL  CSH
Sbjct: 495 TEGIEPNYVAFMAVLTACSH 514



 Score = 41.6 bits (96), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 2/78 (2%)

Query: 216 MYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSIT 275
           +Y     L D+ +LF  +     + W ++I  Y  HG   K+L  F  M   G+ PD   
Sbjct: 51  IYSHINLLHDSLRLFNTLHFPPALAWKSVIRCYTSHGLPHKSLGSFIGMLASGLYPDHNV 110

Query: 276 FVALLLACNHAGLVDLGI 293
           F ++L AC  A L+DL +
Sbjct: 111 FPSVLKAC--AMLMDLNL 126



 Score = 40.8 bits (94), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 39/159 (24%), Positives = 67/159 (42%), Gaps = 8/159 (5%)

Query: 64  RLPIKDTASWNTMISGFVQKKNMAKARDL---FLAMPEKNSVSWSAMISGYIECGQLDKA 120
           R P    A  N+++   +  K+ ++A+ L    L     +  + S ++S Y     L  +
Sbjct: 2   RSPTSTEALVNSLLRNPLSIKSRSQAQQLHAQVLKFQASSLCNLSLLLSIYSHINLLHDS 61

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLL 180
           + LF        +AW ++I  Y   G    S     L     M+  G+ P+ +   SVL 
Sbjct: 62  LRLFNTLHFPPALAWKSVIRCYTSHGLPHKS-----LGSFIGMLASGLYPDHNVFPSVLK 116

Query: 181 GCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCK 219
            C+ L  L LG+ +H  + +  L  D      L++MY K
Sbjct: 117 ACAMLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSK 155


>gi|115478174|ref|NP_001062682.1| Os09g0251500 [Oryza sativa Japonica Group]
 gi|47848472|dbj|BAD22327.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|47848643|dbj|BAD22491.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113630915|dbj|BAF24596.1| Os09g0251500 [Oryza sativa Japonica Group]
 gi|215767397|dbj|BAG99625.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 877

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 224/532 (42%), Positives = 313/532 (58%), Gaps = 17/532 (3%)

Query: 23  LKDAQELFDKIPQPDVVSYNIMLS-CILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFV 81
           L DA ++FD +   D++ +N ++S C      D   AF  F  L  +      T ++  +
Sbjct: 354 LDDAMKVFDWMSHRDLILWNALISGCSHGGRHD--EAFSIFYGLRKEGLGVNRTTLAAVL 411

Query: 82  QKK---NMAKARDLFLAMPEKNSVSWSA-----MISGYIECGQLDKAVELFKVAPVKSVV 133
           +       A A     A+ EK    + A     +I  Y +C  L  A+ +F+      ++
Sbjct: 412 KSTASLEAASATRQVHALAEKIGFIFDAHVVNGLIDSYWKCSCLSDAIRVFEECSSGDII 471

Query: 134 AWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ 193
           A T+MI+   +  +      E  +KL   M+  G+ P+   LSS+L  C+ LS+ + GKQ
Sbjct: 472 AVTSMITALSQCDH-----GEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQ 526

Query: 194 VHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGK 253
           VH  + K     D  A   L+  Y KCG +EDA   F  +  + VV+W+AMI G AQHG 
Sbjct: 527 VHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGH 586

Query: 254 GEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYT 313
           G++AL LF +M DEG+ P+ IT  ++L ACNHAGLVD   +YF+SM   +GI    +HY+
Sbjct: 587 GKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYS 646

Query: 314 CMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPA 373
           CM+DLLGRAGKL +A++L+  MPF+   +++G LL A RVHK  +L + AA  LF L P 
Sbjct: 647 CMIDLLGRAGKLDDAMELVNSMPFQANASVWGALLGASRVHKDPELGKLAAEKLFILEP- 705

Query: 374 NAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHP 433
             +G +V LAN YA+   W++VA++R  MK++N+ K P  SW+EV   VH F  GD+ HP
Sbjct: 706 EKSGTHVLLANTYASSGMWNEVAKVRKLMKDSNIKKEPAMSWVEVKDKVHTFIVGDKSHP 765

Query: 434 ELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLG 493
               I+ KL EL   M  AGY+P+++  LH +    KE LL  HSE+LA+AF L+  P G
Sbjct: 766 MTKEIYSKLDELGDLMSKAGYIPNVDVDLHDLDRSEKELLLSHHSERLAVAFALLSTPPG 825

Query: 494 TPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
            PIRV KNLR+C DCH A K+IS I  REII+RD  RFHHF+DGTCSCGDYW
Sbjct: 826 APIRVKKNLRICRDCHMAFKFISNIVSREIIIRDINRFHHFRDGTCSCGDYW 877



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 75/268 (27%), Positives = 137/268 (51%), Gaps = 13/268 (4%)

Query: 21  GKLKDAQELFDKI-PQPDVVSYNIMLSCILLNSD--DVVAAFDFFQRLPIKDTA-SWNTM 76
           G + DA+ +FD+   + + VS+N ++S  + N    D +  F       I+ T   ++ +
Sbjct: 149 GFMDDARRVFDEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCV 208

Query: 77  ISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSV 132
           ++     +N+   R +   +     EK+  + +A++  Y++ G++D A  +F+  P   V
Sbjct: 209 VNACTGSRNIDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDV 268

Query: 133 VAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGK 192
           V+W A+ISG      V N      ++LL  M   G+ PN   LSS+L  C+   +  LG+
Sbjct: 269 VSWNALISGC-----VLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGR 323

Query: 193 QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHG 252
           Q+H  + K+    D      L+ MY K   L+DA K+F  +  +D++ WNA+ISG +  G
Sbjct: 324 QIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHGG 383

Query: 253 KGEKALRLFDKMKDEGMKPDSITFVALL 280
           + ++A  +F  ++ EG+  +  T  A+L
Sbjct: 384 RHDEAFSIFYGLRKEGLGVNRTTLAAVL 411



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 93/351 (26%), Positives = 160/351 (45%), Gaps = 34/351 (9%)

Query: 26  AQELFDKIPQPDVVSYNIMLSCILLNS--DDVVAAFDFFQR---------LPIKDTASWN 74
           A+ +FD+IP P  VS++ +++    N      + AF   +          LP+      +
Sbjct: 56  ARRVFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKCVPD 115

Query: 75  TMISGFVQKKNMAKA--RDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELF-KVAPVKS 131
             +   V    MA     D+F+A         +A+++ Y   G +D A  +F +    ++
Sbjct: 116 AQLGAQVHAMAMATGFGSDVFVA---------NALVAMYGGFGFMDDARRVFDEAGSERN 166

Query: 132 VVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLG 191
            V+W  ++S Y+K     N    D +++   M+  GI+P     S V+  C+   ++  G
Sbjct: 167 AVSWNGLMSAYVK-----NDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAG 221

Query: 192 KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQH 251
           +QVH +V +    KD      L+ MY K G ++ A  +F ++   DVV+WNA+ISG   +
Sbjct: 222 RQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLN 281

Query: 252 GKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDH 311
           G   +A+ L  +MK  G+ P+     ++L AC  AG  DLG Q    M+      A  D 
Sbjct: 282 GHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIK---ANADSDD 338

Query: 312 Y--TCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLA 360
           Y    +VD+  +   L +A+ +   M  +    ++  L+S C    R D A
Sbjct: 339 YIGVGLVDMYAKNHFLDDAMKVFDWMSHR-DLILWNALISGCSHGGRHDEA 388



 Score = 39.7 bits (91), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 27/99 (27%), Positives = 49/99 (49%), Gaps = 2/99 (2%)

Query: 171 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 230
           +A ++S  L   +   +L  G  +H  + KS      +    LIS Y KC     A ++F
Sbjct: 3   SAGTISQQLTRYAAAQALLPGAHLHANLLKSGFL--ASLRNHLISFYSKCRRPCCARRVF 60

Query: 231 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGM 269
            EI     V+W+++++ Y+ +G    A++ F  M+ EG+
Sbjct: 61  DEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGV 99


>gi|359497398|ref|XP_002270940.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 640

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 209/492 (42%), Positives = 297/492 (60%), Gaps = 6/492 (1%)

Query: 54  DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE 113
           D+  A +    +   D   +N +++ +V+   +  A DLF  MPE++ VSW+ MI G+  
Sbjct: 155 DIEIARNILDEMAHPDLVPYNVLLAEYVRVGEINLAHDLFDRMPERDLVSWNTMIHGHAS 214

Query: 114 CGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNAS 173
            G +  A +LF     + +++W++MI+ Y K        + + L+L   M    + P+  
Sbjct: 215 LGDVGTAKKLFDRTCERDLISWSSMIAAYAK-----ARQSNEALRLFHEMQLANVLPDKV 269

Query: 174 SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI 233
           ++ SVL  C  + +L +GK +H+ + ++ +  D    T L+ MY KCGD++++ ++F  +
Sbjct: 270 TMVSVLSACGDVGALGMGKMIHECIERNRIEIDLKLGTSLVDMYAKCGDIDNSLRVFNGM 329

Query: 234 QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGI 293
             +DV  W+AMI G A HG GE AL  F KM  E +KP+ +TF+ +L AC+H GLVD G 
Sbjct: 330 NNRDVFAWSAMIMGLANHGFGELALDHFSKMISEDIKPNDVTFIGVLSACSHIGLVDEGW 389

Query: 294 QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRV 353
            YF SM   Y ++ K +HY C+VD+LGRAG+L EA++LIK MPF P   ++  LL ACR+
Sbjct: 390 TYFTSMSKVYDVSPKIEHYGCVVDILGRAGRLQEAMELIKSMPFAPDAIVWRALLGACRI 449

Query: 354 HKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGY 413
           +K +++AE A +NL  L P +  G YV L+NIY+  K+WD V  +R  MK  N+ K+PG 
Sbjct: 450 YKNVEIAEEATVNLLELEP-HVDGNYVLLSNIYSQAKEWDKVVNVRRMMKNINIQKVPGS 508

Query: 414 SWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQL 473
           S IEV   VHEF +GD+ HPE   I   L E+  R+K  GY P     L    E+ KE  
Sbjct: 509 SSIEVDNAVHEFVAGDQSHPESKKILRMLSEITARLKANGYAPLTASVLQDFDEKEKENA 568

Query: 474 LLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHH 533
           L  HSEKLAIAFGL+    G+ IR+ KNLRVC DCH A K IS   KR IIVRD  RFHH
Sbjct: 569 LAHHSEKLAIAFGLLSTAPGSTIRIVKNLRVCDDCHIAIKLISRTYKRRIIVRDRNRFHH 628

Query: 534 FKDGTCSCGDYW 545
           F +G+CSC DYW
Sbjct: 629 FVNGSCSCKDYW 640



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 73/297 (24%), Positives = 135/297 (45%), Gaps = 29/297 (9%)

Query: 51  NSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK-----NSVSWS 105
           +++D++ A   F  +P  DT  WNTMI  ++  +N  ++  LF  M  +     +S S S
Sbjct: 50  SANDLLYARSVFDEIPSPDTFIWNTMIRAYLNSQNPQESMSLFFQMRHQECIPIDSYSLS 109

Query: 106 AMISGYIECGQLDKA-------VELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLK 158
            +I     CG+L           ++ K+     +   TA+I  Y KFG +E         
Sbjct: 110 LVIQA---CGRLKDPGNGQKLHTQVLKIGLGSDLFVETALIEMYAKFGDIE--------- 157

Query: 159 LLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYC 218
           + R ++     P+    + +L     +  + L    H L  + P  +D  +   +I  + 
Sbjct: 158 IARNILDEMAHPDLVPYNVLLAEYVRVGEINLA---HDLFDRMPE-RDLVSWNTMIHGHA 213

Query: 219 KCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVA 278
             GD+  A KLF     +D+++W++MI+ YA+  +  +ALRLF +M+   + PD +T V+
Sbjct: 214 SLGDVGTAKKLFDRTCERDLISWSSMIAAYAKARQSNEALRLFHEMQLANVLPDKVTMVS 273

Query: 279 LLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335
           +L AC   G + +G +     +    I       T +VD+  + G +  ++ +   M
Sbjct: 274 VLSACGDVGALGMG-KMIHECIERNRIEIDLKLGTSLVDMYAKCGDIDNSLRVFNGM 329



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 66/285 (23%), Positives = 121/285 (42%), Gaps = 54/285 (18%)

Query: 7   VNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP 66
           V +N +LA + +  G++  A +LFD++P+ D+VS+N M+     +  DV  A   F R  
Sbjct: 172 VPYNVLLAEYVRV-GEINLAHDLFDRMPERDLVSWNTMIHG-HASLGDVGTAKKLFDRTC 229

Query: 67  IKDTASWNTMISGFVQKKNMAKARDLFLAMP----------------------------- 97
            +D  SW++MI+ + + +   +A  LF  M                              
Sbjct: 230 ERDLISWSSMIAAYAKARQSNEALRLFHEMQLANVLPDKVTMVSVLSACGDVGALGMGKM 289

Query: 98  -----EKNSVS-----WSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGY 147
                E+N +       ++++  Y +CG +D ++ +F     + V AW+AMI G    G+
Sbjct: 290 IHECIERNRIEIDLKLGTSLVDMYAKCGDIDNSLRVFNGMNNRDVFAWSAMIMGLANHGF 349

Query: 148 VENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLG----KQVHQLVFKSPL 203
                 E  L     MI   I+PN  +   VL  CSH+  +  G      + ++   SP 
Sbjct: 350 -----GELALDHFSKMISEDIKPNDVTFIGVLSACSHIGLVDEGWTYFTSMSKVYDVSPK 404

Query: 204 CKDTTALTPLISMYCKCGDLEDACKLFLEIQ-RKDVVTWNAMISG 247
            +    +  ++    + G L++A +L   +    D + W A++  
Sbjct: 405 IEHYGCVVDILG---RAGRLQEAMELIKSMPFAPDAIVWRALLGA 446



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 63/237 (26%), Positives = 103/237 (43%), Gaps = 20/237 (8%)

Query: 120 AVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVL 179
           A  +F   P      W  MI  Y+     + S +       +M     I  ++ SLS V+
Sbjct: 57  ARSVFDEIPSPDTFIWNTMIRAYLNSQNPQESMS----LFFQMRHQECIPIDSYSLSLVI 112

Query: 180 LGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVV 239
             C  L     G+++H  V K  L  D    T LI MY K GD+E A  +  E+   D+V
Sbjct: 113 QACGRLKDPGNGQKLHTQVLKIGLGSDLFVETALIEMYAKFGDIEIARNILDEMAHPDLV 172

Query: 240 TWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGI--QYFD 297
            +N +++ Y + G+   A  LFD+M +     D +++  ++    HA L D+G   + FD
Sbjct: 173 PYNVLLAEYVRVGEINLAHDLFDRMPER----DLVSWNTMIHG--HASLGDVGTAKKLFD 226

Query: 298 SMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK---PQPAIFGTLLSAC 351
                  I+     ++ M+    +A +  EA+ L  +M      P      ++LSAC
Sbjct: 227 RTCERDLIS-----WSSMIAAYAKARQSNEALRLFHEMQLANVLPDKVTMVSVLSAC 278


>gi|222641140|gb|EEE69272.1| hypothetical protein OsJ_28537 [Oryza sativa Japonica Group]
          Length = 784

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 224/532 (42%), Positives = 313/532 (58%), Gaps = 17/532 (3%)

Query: 23  LKDAQELFDKIPQPDVVSYNIMLS-CILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFV 81
           L DA ++FD +   D++ +N ++S C      D   AF  F  L  +      T ++  +
Sbjct: 261 LDDAMKVFDWMSHRDLILWNALISGCSHGGRHD--EAFSIFYGLRKEGLGVNRTTLAAVL 318

Query: 82  QKK---NMAKARDLFLAMPEKNSVSWSA-----MISGYIECGQLDKAVELFKVAPVKSVV 133
           +       A A     A+ EK    + A     +I  Y +C  L  A+ +F+      ++
Sbjct: 319 KSTASLEAASATRQVHALAEKIGFIFDAHVVNGLIDSYWKCSCLSDAIRVFEECSSGDII 378

Query: 134 AWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ 193
           A T+MI+   +  +      E  +KL   M+  G+ P+   LSS+L  C+ LS+ + GKQ
Sbjct: 379 AVTSMITALSQCDH-----GEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQ 433

Query: 194 VHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGK 253
           VH  + K     D  A   L+  Y KCG +EDA   F  +  + VV+W+AMI G AQHG 
Sbjct: 434 VHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGH 493

Query: 254 GEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYT 313
           G++AL LF +M DEG+ P+ IT  ++L ACNHAGLVD   +YF+SM   +GI    +HY+
Sbjct: 494 GKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYS 553

Query: 314 CMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPA 373
           CM+DLLGRAGKL +A++L+  MPF+   +++G LL A RVHK  +L + AA  LF L P 
Sbjct: 554 CMIDLLGRAGKLDDAMELVNSMPFQANASVWGALLGASRVHKDPELGKLAAEKLFILEP- 612

Query: 374 NAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHP 433
             +G +V LAN YA+   W++VA++R  MK++N+ K P  SW+EV   VH F  GD+ HP
Sbjct: 613 EKSGTHVLLANTYASSGMWNEVAKVRKLMKDSNIKKEPAMSWVEVKDKVHTFIVGDKSHP 672

Query: 434 ELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLG 493
               I+ KL EL   M  AGY+P+++  LH +    KE LL  HSE+LA+AF L+  P G
Sbjct: 673 MTKEIYSKLDELGDLMSKAGYIPNVDVDLHDLDRSEKELLLSHHSERLAVAFALLSTPPG 732

Query: 494 TPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
            PIRV KNLR+C DCH A K+IS I  REII+RD  RFHHF+DGTCSCGDYW
Sbjct: 733 APIRVKKNLRICRDCHMAFKFISNIVSREIIIRDINRFHHFRDGTCSCGDYW 784



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 74/268 (27%), Positives = 139/268 (51%), Gaps = 13/268 (4%)

Query: 21  GKLKDAQELFDKI-PQPDVVSYNIMLSCILLNSD--DVVAAFDFFQRLPIKDTA-SWNTM 76
           G + DA+ +FD+   + + VS+N ++S  + N    D +  F       I+ T   ++ +
Sbjct: 56  GFMDDARRVFDEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCV 115

Query: 77  ISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSV 132
           ++     +N+   R +   +     EK+  + +A++  Y++ G++D A  +F+  P   V
Sbjct: 116 VNACTGSRNIDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDV 175

Query: 133 VAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGK 192
           V+W A+ISG +  G+   +     ++LL  M   G+ PN   LSS+L  C+   +  LG+
Sbjct: 176 VSWNALISGCVLNGHDHRA-----IELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGR 230

Query: 193 QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHG 252
           Q+H  + K+    D      L+ MY K   L+DA K+F  +  +D++ WNA+ISG +  G
Sbjct: 231 QIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHGG 290

Query: 253 KGEKALRLFDKMKDEGMKPDSITFVALL 280
           + ++A  +F  ++ EG+  +  T  A+L
Sbjct: 291 RHDEAFSIFYGLRKEGLGVNRTTLAAVL 318



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/259 (28%), Positives = 126/259 (48%), Gaps = 12/259 (4%)

Query: 105 SAMISGYIECGQLDKAVELF-KVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMM 163
           +A+++ Y   G +D A  +F +    ++ V+W  ++S Y+K     N    D +++   M
Sbjct: 46  NALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLMSAYVK-----NDQCGDAIQVFGEM 100

Query: 164 IGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDL 223
           +  GI+P     S V+  C+   ++  G+QVH +V +    KD      L+ MY K G +
Sbjct: 101 VWSGIQPTEFGFSCVVNACTGSRNIDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRV 160

Query: 224 EDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC 283
           + A  +F ++   DVV+WNA+ISG   +G   +A+ L  +MK  G+ P+     ++L AC
Sbjct: 161 DIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKAC 220

Query: 284 NHAGLVDLGIQYFDSMVNDYGIAAKPDHY--TCMVDLLGRAGKLVEAVDLIKKMPFKPQP 341
             AG  DLG Q    M+      A  D Y    +VD+  +   L +A+ +   M  +   
Sbjct: 221 AGAGAFDLGRQIHGFMIK---ANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHR-DL 276

Query: 342 AIFGTLLSACRVHKRLDLA 360
            ++  L+S C    R D A
Sbjct: 277 ILWNALISGCSHGGRHDEA 295



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 85/175 (48%), Gaps = 5/175 (2%)

Query: 178 VLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI-QRK 236
           V+L C  +   QLG QVH +   +    D      L++MY   G ++DA ++F E    +
Sbjct: 15  VVLKC--VPDAQLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFDEAGSER 72

Query: 237 DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYF 296
           + V+WN ++S Y ++ +   A+++F +M   G++P    F  ++ AC  +  +D G Q  
Sbjct: 73  NAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGRQVH 132

Query: 297 DSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSAC 351
            +MV   G          +VD+  + G++  A  + +KMP       +  L+S C
Sbjct: 133 -AMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMP-DSDVVSWNALISGC 185


>gi|449467092|ref|XP_004151259.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 211/534 (39%), Positives = 330/534 (61%), Gaps = 16/534 (2%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G +  A+++FD+I   +V S+  M++  +        A D F+ + +      +   S  
Sbjct: 323 GSMCAARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSST 382

Query: 81  VQK-KNMAKAR---DLF-----LAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKS 131
           ++   N+A  R    +F     L     N V+ +++IS Y   G++D A + F +   K+
Sbjct: 383 LKACANLAALRIGEQVFTHAVKLGFSSVNCVA-NSLISMYARSGRIDDARKAFDILFEKN 441

Query: 132 VVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLG 191
           ++++  +I  Y K     N  +E+ L+L   +   G+  +A + +S+L G + + ++  G
Sbjct: 442 LISYNTVIDAYAK-----NLNSEEALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKG 496

Query: 192 KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQH 251
           +Q+H  V KS L  + +    LISMY +CG++E A ++F +++ ++V++W ++I+G+A+H
Sbjct: 497 EQIHARVIKSGLKLNQSVCNALISMYSRCGNIESAFQVFEDMEDRNVISWTSIITGFAKH 556

Query: 252 GKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDH 311
           G   +AL LF KM +EG++P+ +T++A+L AC+H GLV+ G ++F SM  ++G+  + +H
Sbjct: 557 GFATQALELFHKMLEEGVRPNLVTYIAVLSACSHVGLVNEGWKHFKSMYTEHGVIPRMEH 616

Query: 312 YTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLN 371
           Y CMVD+LGR+G L EA+  I  MP+K    ++ T L ACRVH  L+L + AA  +    
Sbjct: 617 YACMVDILGRSGSLSEAIQFINSMPYKADALVWRTFLGACRVHGNLELGKHAAKMIIEQE 676

Query: 372 PANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRV 431
           P + A  Y+ L+N+YA+  KWD+V+ IR +MKE N++K  G SW+EV   VH+F  GD  
Sbjct: 677 PHDPAA-YILLSNLYASTSKWDEVSNIRKAMKEKNLIKEAGCSWVEVENKVHKFYVGDTS 735

Query: 432 HPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVP 491
           HP+   I+++L+ L  ++K  GYVP+L+F LH V EE KE+LL  HSEK+A+AFGLI   
Sbjct: 736 HPKAAEIYDELQNLSVKIKKLGYVPNLDFVLHDVEEEQKEKLLFQHSEKIAVAFGLISTS 795

Query: 492 LGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
              PIRVFKNLR+CGDCH A KYIS    REIIVRD  RFHH KDG CSC +YW
Sbjct: 796 KMKPIRVFKNLRICGDCHSAIKYISMATGREIIVRDANRFHHIKDGRCSCNEYW 849



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 90/335 (26%), Positives = 162/335 (48%), Gaps = 25/335 (7%)

Query: 16  FAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNT 75
           F K RG L  A ++F+K+P+ + V++ +M++  L+       A D F  + +        
Sbjct: 214 FVKGRGDLVSAFKVFEKMPERNAVTWTLMIT-RLMQFGYAGEAIDLFLEMILSGYEPDRF 272

Query: 76  MISGFVQK-KNMAKARDLFLAMPEKNSVS-----------WSAMISGYIEC---GQLDKA 120
            +SG +    NM    +L L   + +S +              +I+ Y +C   G +  A
Sbjct: 273 TLSGVISACANM----ELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAA 328

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLL 180
            ++F      +V +WTAMI+GY++ G     + E+ L L R MI   + PN  + SS L 
Sbjct: 329 RKIFDQILDHNVFSWTAMITGYVQKG----GYDEEALDLFRGMILTHVIPNHFTFSSTLK 384

Query: 181 GCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVT 240
            C++L++L++G+QV     K            LISMY + G ++DA K F  +  K++++
Sbjct: 385 ACANLAALRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDARKAFDILFEKNLIS 444

Query: 241 WNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV 300
           +N +I  YA++   E+AL LF++++D+GM   + TF +LL      G +  G Q    ++
Sbjct: 445 YNTVIDAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHARVI 504

Query: 301 NDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335
              G+         ++ +  R G +  A  + + M
Sbjct: 505 KS-GLKLNQSVCNALISMYSRCGNIESAFQVFEDM 538



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 105/389 (26%), Positives = 179/389 (46%), Gaps = 48/389 (12%)

Query: 6   TVNWNSVLAGFAKQRGKLKDAQELFDKIPQP-DVVSYNIMLSCILLNSDDVVAAFDFFQR 64
           +V  NS+++ ++K  G+ + A  +F  +    D++S++ M+SC   N+    A   F   
Sbjct: 101 SVTLNSLISLYSKC-GQWEKATSIFQLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDM 159

Query: 65  LPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWS----AMISGYIE------C 114
           +            +G+   +    A     +  E  SV  S     + +GY++      C
Sbjct: 160 IE-----------NGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVVKTGYLQSDVCVGC 208

Query: 115 GQLD----------KAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI 164
           G +D           A ++F+  P ++ V WT MI+  M+FGY     A + + L   MI
Sbjct: 209 GLIDMFVKGRGDLVSAFKVFEKMPERNAVTWTLMITRLMQFGY-----AGEAIDLFLEMI 263

Query: 165 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKC---G 221
             G  P+  +LS V+  C+++  L LG+Q+H    +  L  D      LI+MY KC   G
Sbjct: 264 LSGYEPDRFTLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDG 323

Query: 222 DLEDACKLFLEIQRKDVVTWNAMISGYAQHGK-GEKALRLFDKMKDEGMKPDSITFVALL 280
            +  A K+F +I   +V +W AMI+GY Q G   E+AL LF  M    + P+  TF + L
Sbjct: 324 SMCAARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTL 383

Query: 281 LACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQ 340
            AC +   + +G Q F   V   G ++       ++ +  R+G++ +A      + F+  
Sbjct: 384 KACANLAALRIGEQVFTHAVK-LGFSSVNCVANSLISMYARSGRIDDARKAFDIL-FEKN 441

Query: 341 PAIFGTLLSACRVHKRLDLAEFAAMNLFN 369
              + T++ A    K L+  E  A+ LFN
Sbjct: 442 LISYNTVIDA--YAKNLNSEE--ALELFN 466



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 59/192 (30%), Positives = 92/192 (47%), Gaps = 4/192 (2%)

Query: 148 VENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDT 207
           + N      +  L  M+  G  P+  + S  L  C    S  +G  VH+ + +S L  D+
Sbjct: 42  INNGRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDS 101

Query: 208 TALTPLISMYCKCGDLEDACKLF-LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKD 266
             L  LIS+Y KCG  E A  +F L    +D+++W+AM+S +A +  G +AL  F  M +
Sbjct: 102 VTLNSLISLYSKCGQWEKATSIFQLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIE 161

Query: 267 EGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLL--GRAGK 324
            G  P+   F A   AC+ A  V +G   F  +V    + +       ++D+   GR G 
Sbjct: 162 NGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGR-GD 220

Query: 325 LVEAVDLIKKMP 336
           LV A  + +KMP
Sbjct: 221 LVSAFKVFEKMP 232



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 89/349 (25%), Positives = 149/349 (42%), Gaps = 45/349 (12%)

Query: 100 NSVSWSAMISGYIECGQLDKAVELFKV-APVKSVVAWTAMISGYMKFGYVENSWAEDGLK 158
           +SV+ +++IS Y +CGQ +KA  +F++    + +++W+AM+S +       N+     L 
Sbjct: 100 DSVTLNSLISLYSKCGQWEKATSIFQLMGSSRDLISWSAMVSCF-----ANNNMGFRALL 154

Query: 159 LLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSP-LCKDTTALTPLISMY 217
               MI  G  PN    ++    CS    + +G  +   V K+  L  D      LI M+
Sbjct: 155 TFVDMIENGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMF 214

Query: 218 CKC-GDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITF 276
            K  GDL  A K+F ++  ++ VTW  MI+   Q G   +A+ LF +M   G +PD  T 
Sbjct: 215 VKGRGDLVSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLEMILSGYEPDRFTL 274

Query: 277 VALLLACNHAGLVDLGIQYFDS---------------MVNDYG--------IAAKP---- 309
             ++ AC +  L+ LG Q                   ++N Y          AA+     
Sbjct: 275 SGVISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQ 334

Query: 310 --DH----YTCMVD-LLGRAGKLVEAVDLIKKMPFK---PQPAIFGTLLSACRVHKRLDL 359
             DH    +T M+   + + G   EA+DL + M      P    F + L AC     L +
Sbjct: 335 ILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRI 394

Query: 360 AEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVV 408
            E    +   L  ++       L ++YA   + DD  +    + E N++
Sbjct: 395 GEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDARKAFDILFEKNLI 443


>gi|449523810|ref|XP_004168916.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At2g01510-like [Cucumis
           sativus]
          Length = 816

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 209/555 (37%), Positives = 328/555 (59%), Gaps = 18/555 (3%)

Query: 3   VKTTVNWN----SVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAA 58
           +KT   WN    + L  +  +  ++ +  +LF ++P+ D +SYN++++    N      +
Sbjct: 268 LKTNFVWNVFVGNALLDYYSKHDQVDEVGKLFXEMPELDGISYNVVITSYAWNGQ-FKES 326

Query: 59  FDFFQRLPI----KDTASWNTMISGFVQKKNMAKARDL----FLAMPEKNSVSWSAMISG 110
           FD F++L      +    + T++S      N+   R +            S   +A++  
Sbjct: 327 FDLFRKLQFTRFDRRQFPFATLLSIATSSLNLRMGRQIHCQAITVGANFESRVENALVDM 386

Query: 111 YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRP 170
           Y +C    +A ++F     KS V WTAMIS Y++ G       E+G+ +   M   G+  
Sbjct: 387 YAKCNGDKEAQKIFDNIACKSTVPWTAMISAYVQKGK-----HEEGINVFSDMRRTGVPA 441

Query: 171 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 230
           + ++ +S+L  C++L+S+ LG+Q+H L+ +S    +  + + L+  Y KCG + DA K F
Sbjct: 442 DQATFASILRACANLASISLGRQLHSLLIRSGFMSNVYSGSALLDTYAKCGCMTDAIKSF 501

Query: 231 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVD 290
            E+  ++ V+WNA+IS YAQ+G  +  L  F +M   G KPDS++F+++L AC+H G V+
Sbjct: 502 GEMPERNSVSWNALISAYAQNGNVDGTLNSFQQMIQSGYKPDSVSFLSVLSACSHCGFVE 561

Query: 291 LGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSA 350
             + +F+SM   Y +  K +HYT MVD+L R G+  EA  L+ +MPF+P   ++ ++L++
Sbjct: 562 EALWHFNSMTQIYEVTPKREHYTSMVDVLCRNGRFDEAEKLMTEMPFEPSEIMWSSVLNS 621

Query: 351 CRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKM 410
           CR+HK  +LA+ AA  LFN+     A  Y+ ++NIYA   +WD+VA+++ +M++  V K+
Sbjct: 622 CRIHKNHELAKKAADRLFNMEDLRDAAPYINMSNIYAVAGQWDNVAKVKKAMRDRGVRKV 681

Query: 411 PGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVK 470
           P YSW+E+    H F + D+ HPE+  I  K+  L K M+  GY PD   ALH V E +K
Sbjct: 682 PAYSWVEIKHQTHVFSANDKSHPEMKKILRKINALSKEMEKKGYKPDTTCALHDVDEVIK 741

Query: 471 EQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTR 530
            + L +HSE+ AIAF L+  P G+PI V KNLR C DCH A K IS I +REIIVRD++R
Sbjct: 742 IESLKYHSERFAIAFALMNTPDGSPIVVMKNLRACTDCHAAIKVISQIVEREIIVRDSSR 801

Query: 531 FHHFKDGTCSCGDYW 545
           FHHFKDG CSCGDYW
Sbjct: 802 FHHFKDGVCSCGDYW 816



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 69/214 (32%), Positives = 120/214 (56%), Gaps = 5/214 (2%)

Query: 69  DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAP 128
           +T   N  ++ F+++ ++  A  +F  MP KN++S + MISG+++ G+L KA ELF    
Sbjct: 42  NTCRSNFQVNNFLERGDLVHAHQVFDQMPAKNTISLNMMISGHLKFGKLSKARELFDGMV 101

Query: 129 VKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSL 188
            ++ V+WT +I GY+     +++ +++  +L   M   GI P+  +L ++L G   L + 
Sbjct: 102 ERTAVSWTILIGGYL-----QSNQSKEAFRLYADMRRGGIEPDYVTLVTLLSGFGELETK 156

Query: 189 QLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGY 248
            +  Q+H  V K     +      L+  YCK   L  A +LF  +  KD VT+N++++GY
Sbjct: 157 NVIVQIHTHVIKLGYEYNLMVCNSLVDAYCKTHCLYLASQLFKHMLNKDTVTFNSLMTGY 216

Query: 249 AQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA 282
           +  G  E+A+ LF ++ + G+KP   TF ALL A
Sbjct: 217 SNEGLNEEAIELFLELHNSGIKPSDFTFAALLSA 250



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 96/425 (22%), Positives = 171/425 (40%), Gaps = 82/425 (19%)

Query: 3   VKTTVNWNSVLAGFAK----QRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAA 58
           VKT  N N+  + F      +RG L  A ++FD++P  + +S N+M+S   L    +  A
Sbjct: 35  VKTGFNPNTCRSNFQVNNFLERGDLVHAHQVFDQMPAKNTISLNMMISG-HLKFGKLSKA 93

Query: 59  FDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMISGYIE- 113
            + F  +  +   SW  +I G++Q     +A  L+  M     E + V+   ++SG+ E 
Sbjct: 94  RELFDGMVERTAVSWTILIGGYLQSNQSKEAFRLYADMRRGGIEPDYVTLVTLLSGFGEL 153

Query: 114 ------------------------CGQLDKAV----------ELFKVAPVKSVVAWTAMI 139
                                   C  L  A           +LFK    K  V + +++
Sbjct: 154 ETKNVIVQIHTHVIKLGYEYNLMVCNSLVDAYCKTHCLYLASQLFKHMLNKDTVTFNSLM 213

Query: 140 SGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVF 199
           +GY   G       E+ ++L   +   GI+P+  + +++L     L   + G+QVH  V 
Sbjct: 214 TGYSNEGL-----NEEAIELFLELHNSGIKPSDFTFAALLSAAVGLDDTKFGQQVHGFVL 268

Query: 200 KSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALR 259
           K+    +      L+  Y K   +++  KLF E+   D +++N +I+ YA +G+ +++  
Sbjct: 269 KTNFVWNVFVGNALLDYYSKHDQVDEVGKLFXEMPELDGISYNVVITSYAWNGQFKESFD 328

Query: 260 LFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQY----------FDSMVNDY------ 303
           LF K++          F  LL     +  + +G Q           F+S V +       
Sbjct: 329 LFRKLQFTRFDRRQFPFATLLSIATSSLNLRMGRQIHCQAITVGANFESRVENALVDMYA 388

Query: 304 -------------GIAAKPD-HYTCMVDLLGRAGKLVEAVDLIKKMPFKPQP---AIFGT 346
                         IA K    +T M+    + GK  E +++   M     P   A F +
Sbjct: 389 KCNGDKEAQKIFDNIACKSTVPWTAMISAYVQKGKHEEGINVFSDMRRTGVPADQATFAS 448

Query: 347 LLSAC 351
           +L AC
Sbjct: 449 ILRAC 453


>gi|225432742|ref|XP_002279134.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22690
           [Vitis vinifera]
          Length = 836

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 228/552 (41%), Positives = 325/552 (58%), Gaps = 21/552 (3%)

Query: 4   KTTVNWNSVLAGFAKQ---RGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSD------- 53
           +  V +N++L+ +A+Q   R  L    E+  + P+PD V+   MLS I  ++        
Sbjct: 296 RNLVLYNTILSNYARQGLAREALAILDEMLQQGPRPDRVT---MLSAISASAQLVDLFYG 352

Query: 54  DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE 113
            V   +     L   D+   N +I  +++      A  +F  M  K  VSW+++ +G+I 
Sbjct: 353 KVCHGYVIRNGLEGWDSIG-NVIIDMYMKCGKPEMACRVFDLMSNKTVVSWNSLTAGFIR 411

Query: 114 CGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNAS 173
            G ++ A E+F   P ++ V W  MISG      V+ S  ED ++L R M G GI+ +  
Sbjct: 412 NGDVESAWEVFNQIPERNAVFWNTMISGL-----VQKSLFEDAIELFREMQGEGIKADRV 466

Query: 174 SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI 233
           ++  +   C +L + +L K VH  + K+ +  D    T L+ M+ +CGD + A ++F ++
Sbjct: 467 TMMGIASACGYLGAPELAKWVHTYIEKNGIPCDMRLNTALVDMFARCGDPQSAMQVFNKM 526

Query: 234 QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGI 293
             +DV  W A I   A  G GE A  LF++M  +G+KPD + FV +L AC+H G V+ G+
Sbjct: 527 TERDVSAWTAAIGTMAMEGNGEGATGLFNQMLIQGVKPDVVLFVQVLTACSHGGQVEQGL 586

Query: 294 QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRV 353
             F S++ D+GI+ + +HY CMVDLLGRAG L EA DLIK MP +P   ++G+LL+ACRV
Sbjct: 587 HIF-SLMEDHGISPQIEHYGCMVDLLGRAGLLREAFDLIKSMPMEPNDVVWGSLLAACRV 645

Query: 354 HKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGY 413
           HK +++A +AA  +  L P  A G +V L+NIYA+  KW DVAR+RL+++E  V K+PG 
Sbjct: 646 HKNVEMATYAAERINELAPQRA-GVHVLLSNIYASAGKWTDVARVRLNLREKGVRKVPGS 704

Query: 414 SWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQL 473
           S ++V  V+HEF SGD  HPE+  I   L+E+  R   AG++PDL   L  V E+ KE L
Sbjct: 705 SSVQVNGVIHEFTSGDESHPEMTHIALMLQEMNCRFSDAGHIPDLSNVLLDVDEQEKEYL 764

Query: 474 LLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHH 533
           L  HSEKLAIAFGLI      PIRV KNLR+C DCH   K  S I  REIIVRD  RFH 
Sbjct: 765 LSRHSEKLAIAFGLIATGRSMPIRVVKNLRMCSDCHSFAKMASIIYNREIIVRDNNRFHF 824

Query: 534 FKDGTCSCGDYW 545
           F+ G CSC DYW
Sbjct: 825 FRQGLCSCCDYW 836



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 109/194 (56%), Gaps = 7/194 (3%)

Query: 98  EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGL 157
           E++    + +I  Y ECG +D   ++F+    ++VV+WT++I GY +         ++ +
Sbjct: 163 EEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVSWTSLICGYAR-----GDRPKEAV 217

Query: 158 KLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMY 217
            L   M+  GIRP++ ++  V+  C+ L  L +G++V   + +  L  +   +  L+ MY
Sbjct: 218 SLFFEMVEAGIRPSSVTMVCVISACAKLRDLDMGERVCAYIGELGLKLNKVMVNALVDMY 277

Query: 218 CKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFV 277
            KCG ++ A +LF E   +++V +N ++S YA+ G   +AL + D+M  +G +PD +T +
Sbjct: 278 MKCGAIDAAKRLFDECVDRNLVLYNTILSNYARQGLAREALAILDEMLQQGPRPDRVTML 337

Query: 278 ALLLACNHAGLVDL 291
           + + A   A LVDL
Sbjct: 338 SAISA--SAQLVDL 349



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 63/219 (28%), Positives = 112/219 (51%), Gaps = 12/219 (5%)

Query: 119 KAVELFK--VAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLS 176
           KA ELFK  V    ++    ++I GY   G        + + L   M+ LG+ PN  +  
Sbjct: 81  KAFELFKEDVRSDDALFMLNSLIRGYSSAGL-----GREAILLYVRMLVLGVTPNHYTFP 135

Query: 177 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK 236
            VL GC+ +++   G QVH  V K  L +D      LI  Y +CG ++   K+F  +  +
Sbjct: 136 FVLSGCTKIAAFCEGIQVHGSVVKMGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSER 195

Query: 237 DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYF 296
           +VV+W ++I GYA+  + ++A+ LF +M + G++P S+T V ++ AC     +D+G +  
Sbjct: 196 NVVSWTSLICGYARGDRPKEAVSLFFEMVEAGIRPSSVTMVCVISACAKLRDLDMG-ERV 254

Query: 297 DSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335
            + + + G+         +VD+  + G    A+D  K++
Sbjct: 255 CAYIGELGLKLNKVMVNALVDMYMKCG----AIDAAKRL 289


>gi|359488803|ref|XP_002272525.2| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950 [Vitis vinifera]
          Length = 1291

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 230/540 (42%), Positives = 320/540 (59%), Gaps = 37/540 (6%)

Query: 9    WNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK 68
            WN ++ GFA   G+   + EL+ K+ +              L  D    AF F     +K
Sbjct: 786  WNVMIRGFATD-GRFLSSLELYSKMMEKG------------LKPDKF--AFPF----ALK 826

Query: 69   DTASWNTMISGFVQKKNM---AKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFK 125
              A  + +  G V  +++     + DLF+          +A++  Y +CG ++ A  +F 
Sbjct: 827  SCAGLSDLQRGKVIHQHLVCCGCSNDLFVD---------AALVDMYAKCGDIEAARLVFD 877

Query: 126  VAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHL 185
               V+ +V+WT+MISGY   GY  NS   + L    +M   G+ PN  S+ SVLL C +L
Sbjct: 878  KMAVRDLVSWTSMISGYAHNGY--NS---ETLGFFDLMRSSGVIPNRVSILSVLLACGNL 932

Query: 186  SSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMI 245
             +L+ G+  H  V ++    D    T ++ MY KCG L+ A  LF E   KD+V W+AMI
Sbjct: 933  GALRKGEWFHSYVIQTGFEFDILVATAIMDMYSKCGSLDLARCLFDETAGKDLVCWSAMI 992

Query: 246  SGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGI 305
            + Y  HG G KA+ LFD+M   G++P  +TF  +L AC+H+GL++ G  YF  M  ++ I
Sbjct: 993  ASYGIHGHGRKAIDLFDQMVKAGVRPSHVTFTCVLSACSHSGLLEEGKMYFQLMTEEFVI 1052

Query: 306  AAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAM 365
            A K  +Y CMVDLLGRAG+L EAVDLI+ MP +P  +I+G+LL ACR+H  LDLAE  A 
Sbjct: 1053 ARKLSNYACMVDLLGRAGQLSEAVDLIENMPVEPDASIWGSLLGACRIHNNLDLAEKIAD 1112

Query: 366  NLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEF 425
            +LF+L+P + AG +V L+NIYAA  +W++V ++R  M      K+ G+S +E    VH+F
Sbjct: 1113 HLFHLDPVH-AGYHVLLSNIYAAKSRWNEVEKVRKMMARRGANKIQGFSLVEYDNQVHKF 1171

Query: 426  RSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAF 485
              GDR HP+   ++ KL+EL   MK  GYVP  +F LH + EE KE  L +HSE+LAIAF
Sbjct: 1172 GVGDRSHPQWEKLYAKLEELAAPMKHLGYVPLTDFVLHDIEEEAKEAALSYHSERLAIAF 1231

Query: 486  GLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
            GLI    GT +R+ KNLR+CGDCH A K IS I  R I+VRD  RFH F+DG CSCGDYW
Sbjct: 1232 GLINTSPGTTLRITKNLRICGDCHNAIKLISKIVNRVILVRDMHRFHRFEDGVCSCGDYW 1291



 Score =  319 bits (818), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 180/467 (38%), Positives = 279/467 (59%), Gaps = 19/467 (4%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
           NS+L  +AK  G  K A  LF K+P+ DV+S++ M++C   N++    A + F  +  K 
Sbjct: 245 NSLLNLYAKT-GCEKIAANLFSKMPEKDVISWSTMIAC-YANNEAANEALNLFHEMIEKR 302

Query: 70  TASWNTMISGFVQ----KKNMAKARDLFLAMPEKN-----SVSWSAMISGYIECGQLDKA 120
               +  +   +Q     +N+ + + +      K      SVS +A+I  Y++C   D+A
Sbjct: 303 FEPNSVTVVSALQACAVSRNLEEGKKIHKIAVWKGFELDFSVS-TALIDMYMKCSCPDEA 361

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLL 180
           V+LF+  P K VV+W A++SGY      +N  A   + + R M+  GI+P+A ++  +L 
Sbjct: 362 VDLFQRLPKKDVVSWVALLSGY-----AQNGMAYKSMGVFRNMLSDGIQPDAVAVVKILA 416

Query: 181 GCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVT 240
             S L   Q    +H  V +S    +      LI +Y KCG L DA KLF  +  +DVV 
Sbjct: 417 ASSELGIFQQALCLHGYVVRSGFNSNVFVGASLIELYSKCGSLGDAVKLFKGMIVRDVVI 476

Query: 241 WNAMISGYAQHGKGEKALRLFDKM-KDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSM 299
           W++MI+ Y  HG+G +AL +FD+M K+  ++P+++TF+++L AC+HAGLV+ G++ FD M
Sbjct: 477 WSSMIAAYGIHGRGGEALEIFDQMVKNSTVRPNNVTFLSILSACSHAGLVEEGLKIFDRM 536

Query: 300 VNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDL 359
           V+DY +    +H+  MVDLLGR G+L +A+D+I +MP    P ++G LL ACR+H  +++
Sbjct: 537 VHDYQLRPDSEHFGIMVDLLGRIGQLGKAMDIINRMPIPAGPHVWGALLGACRIHHNIEM 596

Query: 360 AEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVG 419
            E AA NLF L+P++ AG Y+ L+NIYA   KWD+VA +R  +KE  + KM G S +EV 
Sbjct: 597 GEAAAKNLFWLDPSH-AGYYILLSNIYAVDGKWDNVAELRTRIKERGLKKMFGQSMVEVR 655

Query: 420 TVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVG 466
             VH F + DR HP+   I+E L++LE +M    Y+PDL+F LH  G
Sbjct: 656 GGVHSFLASDRFHPDSQKIYELLRKLEAQMGKEVYIPDLDFLLHDTG 702



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 91/341 (26%), Positives = 167/341 (48%), Gaps = 46/341 (13%)

Query: 23  LKDAQELFDKIPQPDVVSYNIMLS--CILLNSDDVVAAF------------DFFQRLPIK 68
           L+ A+++FD+ P P+V  +N  L   C     ++ +  F            +F   + +K
Sbjct: 52  LQAARKVFDETPHPNVHLWNSTLRSYCREKQWEETLRLFHLMICTAGEAPDNFTIPIALK 111

Query: 69  DTASWNTM-----ISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVEL 123
             A    +     I GF  KKN     D+F+          SA++  Y +CGQ+ +A+++
Sbjct: 112 ACAGLRMLELGKVIHGFA-KKNDEIGSDMFVG---------SALVELYSKCGQMGEALKV 161

Query: 124 FKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLG-IRPNASSLSSVLLGC 182
           F+       V WT+M++GY      +N+  E+ L L   M+ +  +  +  +L SV+  C
Sbjct: 162 FEEFQRPDTVLWTSMVTGYQ-----QNNDPEEALALFSQMVMMDCVVLDPVTLVSVVSAC 216

Query: 183 SHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWN 242
           + L +++ G  VH LV +     D   +  L+++Y K G  + A  LF ++  KDV++W+
Sbjct: 217 AQLLNVKAGSCVHGLVIRREFDGDLPLVNSLLNLYAKTGCEKIAANLFSKMPEKDVISWS 276

Query: 243 AMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG-----IQYFD 297
            MI+ YA +    +AL LF +M ++  +P+S+T V+ L AC  +  ++ G     I  + 
Sbjct: 277 TMIACYANNEAANEALNLFHEMIEKRFEPNSVTVVSALQACAVSRNLEEGKKIHKIAVWK 336

Query: 298 SMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 338
               D+ ++      T ++D+  +     EAVDL +++P K
Sbjct: 337 GFELDFSVS------TALIDMYMKCSCPDEAVDLFQRLPKK 371



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 82/280 (29%), Positives = 132/280 (47%), Gaps = 17/280 (6%)

Query: 54  DVVAAFDFFQRLPIKDT-------ASWNTMISGF-VQKKNMAKARDLFLAMPEKNSVSWS 105
           D  A   F+QR+   ++       A     IS F   KK  AK     L    +    ++
Sbjct: 700 DTGAVLQFWQRIKATESKYKTIGSAPGTDTISCFSCLKKTHAKIFAYGLQYDSRILTKFA 759

Query: 106 AMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIG 165
            M   Y+   ++D A  +F+  P      W  MI G+   G   +S     L+L   M+ 
Sbjct: 760 IM---YVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFATDGRFLSS-----LELYSKMME 811

Query: 166 LGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLED 225
            G++P+  +    L  C+ LS LQ GK +HQ +       D      L+ MY KCGD+E 
Sbjct: 812 KGLKPDKFAFPFALKSCAGLSDLQRGKVIHQHLVCCGCSNDLFVDAALVDMYAKCGDIEA 871

Query: 226 ACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNH 285
           A  +F ++  +D+V+W +MISGYA +G   + L  FD M+  G+ P+ ++ +++LLAC +
Sbjct: 872 ARLVFDKMAVRDLVSWTSMISGYAHNGYNSETLGFFDLMRSSGVIPNRVSILSVLLACGN 931

Query: 286 AGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKL 325
            G +  G ++F S V   G        T ++D+  + G L
Sbjct: 932 LGALRKG-EWFHSYVIQTGFEFDILVATAIMDMYSKCGSL 970



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 80/268 (29%), Positives = 128/268 (47%), Gaps = 22/268 (8%)

Query: 109 SGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI-GLG 167
           S Y +C  L  A ++F   P  +V  W + +  Y +    E  W E+ L+L  +MI   G
Sbjct: 44  SLYAKCASLQAARKVFDETPHPNVHLWNSTLRSYCR----EKQW-EETLRLFHLMICTAG 98

Query: 168 IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKS-PLCKDTTALTPLISMYCKCGDLEDA 226
             P+  ++   L  C+ L  L+LGK +H    K+  +  D    + L+ +Y KCG + +A
Sbjct: 99  EAPDNFTIPIALKACAGLRMLELGKVIHGFAKKNDEIGSDMFVGSALVELYSKCGQMGEA 158

Query: 227 CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKM-KDEGMKPDSITFVALLLACNH 285
            K+F E QR D V W +M++GY Q+   E+AL LF +M   + +  D +T V+++ AC  
Sbjct: 159 LKVFEEFQRPDTVLWTSMVTGYQQNNDPEEALALFSQMVMMDCVVLDPVTLVSVVSACAQ 218

Query: 286 AGLVDLGIQYFDSMVNDYGIAAKPDH----YTCMVDLLGRAGKLVEAVDLIKKMPFKPQP 341
              V  G     S V+   I  + D        +++L  + G    A +L  KMP K   
Sbjct: 219 LLNVKAG-----SCVHGLVIRREFDGDLPLVNSLLNLYAKTGCEKIAANLFSKMPEK--D 271

Query: 342 AIFGTLLSACRVHKRLDLAEFAAMNLFN 369
            I  + + AC  +     A   A+NLF+
Sbjct: 272 VISWSTMIACYANNE---AANEALNLFH 296



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 81/166 (48%), Gaps = 16/166 (9%)

Query: 193 QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHG 252
           Q+H  VFK+ +  DT   T L S+Y KC  L+ A K+F E    +V  WN+ +  Y +  
Sbjct: 22  QLHSQVFKTGILHDTFFATKLNSLYAKCASLQAARKVFDETPHPNVHLWNSTLRSYCREK 81

Query: 253 KGEKALRLFDKMK-DEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDH 311
           + E+ LRLF  M    G  PD+ T    L AC    +++LG          +G A K D 
Sbjct: 82  QWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELGKVI-------HGFAKKNDE 134

Query: 312 Y-------TCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSA 350
                   + +V+L  + G++ EA+ + ++   +P   ++ ++++ 
Sbjct: 135 IGSDMFVGSALVELYSKCGQMGEALKVFEEFQ-RPDTVLWTSMVTG 179



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 57/268 (21%), Positives = 112/268 (41%), Gaps = 36/268 (13%)

Query: 1    MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVA--A 58
            M V+  V+W S+++G+A   G   +    FD +    V+   + +  +LL   ++ A   
Sbjct: 879  MAVRDLVSWTSMISGYA-HNGYNSETLGFFDLMRSSGVIPNRVSILSVLLACGNLGALRK 937

Query: 59   FDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLD 118
             ++F    I+    ++ +++                          +A++  Y +CG LD
Sbjct: 938  GEWFHSYVIQTGFEFDILVA--------------------------TAIMDMYSKCGSLD 971

Query: 119  KAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSV 178
             A  LF     K +V W+AMI+ Y   G+         + L   M+  G+RP+  + + V
Sbjct: 972  LARCLFDETAGKDLVCWSAMIASYGIHGH-----GRKAIDLFDQMVKAGVRPSHVTFTCV 1026

Query: 179  LLGCSHLSSLQLGKQVHQLVFKS-PLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ-RK 236
            L  CSH   L+ GK   QL+ +   + +  +    ++ +  + G L +A  L   +    
Sbjct: 1027 LSACSHSGLLEEGKMYFQLMTEEFVIARKLSNYACMVDLLGRAGQLSEAVDLIENMPVEP 1086

Query: 237  DVVTWNAMISGYAQHGKGEKALRLFDKM 264
            D   W +++     H   + A ++ D +
Sbjct: 1087 DASIWGSLLGACRIHNNLDLAEKIADHL 1114


>gi|18418348|ref|NP_567948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635622|sp|O81767.2|PP348_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g33990; AltName: Full=Protein EMBRYO DEFECTIVE 2758
 gi|332660906|gb|AEE86306.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 823

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 223/538 (41%), Positives = 319/538 (59%), Gaps = 23/538 (4%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK----DTASWNTM 76
           G+L+D Q++FD++   D++S+N ++    LN +  + A   FQ + +     D  +  ++
Sbjct: 296 GRLRDCQKVFDRMYVRDLISWNSIIKAYELN-EQPLRAISLFQEMRLSRIQPDCLTLISL 354

Query: 77  ISGFVQKKNMAKARDLFLAMPEKNSVSW--------SAMISGYIECGQLDKAVELFKVAP 128
            S   Q  ++   R +      K    W        +A++  Y + G +D A  +F   P
Sbjct: 355 ASILSQLGDIRACRSVQGFTLRKG---WFLEDITIGNAVVVMYAKLGLVDSARAVFNWLP 411

Query: 129 VKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLG-IRPNASSLSSVLLGCSHLSS 187
              V++W  +ISGY      +N +A + +++  +M   G I  N  +  SVL  CS   +
Sbjct: 412 NTDVISWNTIISGY-----AQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGA 466

Query: 188 LQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISG 247
           L+ G ++H  + K+ L  D   +T L  MY KCG LEDA  LF +I R + V WN +I+ 
Sbjct: 467 LRQGMKLHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSVPWNTLIAC 526

Query: 248 YAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAA 307
           +  HG GEKA+ LF +M DEG+KPD ITFV LL AC+H+GLVD G   F+ M  DYGI  
Sbjct: 527 HGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQWCFEMMQTDYGITP 586

Query: 308 KPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNL 367
              HY CMVD+ GRAG+L  A+  IK M  +P  +I+G LLSACRVH  +DL + A+ +L
Sbjct: 587 SLKHYGCMVDMYGRAGQLETALKFIKSMSLQPDASIWGALLSACRVHGNVDLGKIASEHL 646

Query: 368 FNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRS 427
           F + P +  G +V L+N+YA+  KW+ V  IR       + K PG+S +EV   V  F +
Sbjct: 647 FEVEPEH-VGYHVLLSNMYASAGKWEGVDEIRSIAHGKGLRKTPGWSSMEVDNKVEVFYT 705

Query: 428 GDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGL 487
           G++ HP    ++ +L  L+ ++K+ GYVPD  F L  V ++ KE +L+ HSE+LAIAF L
Sbjct: 706 GNQTHPMYEEMYRELTALQAKLKMIGYVPDHRFVLQDVEDDEKEHILMSHSERLAIAFAL 765

Query: 488 IKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           I  P  T IR+FKNLRVCGDCH  TK+IS I +REIIVRD+ RFHHFK+G CSCGDYW
Sbjct: 766 IATPAKTTIRIFKNLRVCGDCHSVTKFISKITEREIIVRDSNRFHHFKNGVCSCGDYW 823



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 69/267 (25%), Positives = 122/267 (45%), Gaps = 20/267 (7%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCI--LLNSDDVVAAFDFFQRLPIKDTASWNTMIS 78
           G +  A+  FD I   DV ++N+M+S      NS +V+  F  F  L    T  + T  S
Sbjct: 100 GNVALARHTFDHIQNRDVYAWNLMISGYGRAGNSSEVIRCFSLFM-LSSGLTPDYRTFPS 158

Query: 79  GFVQKKNMAKARDLFLAMPEKNSVSW-----SAMISGYIECGQLDKAVELFKVAPVKSVV 133
                + +     +   +  K    W     +++I  Y     +  A  LF   PV+ + 
Sbjct: 159 VLKACRTVIDGNKIH-CLALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMG 217

Query: 134 AWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRP-NASSLSSVLLGCSHLSSLQLGK 192
           +W AMISGY + G      A++ L L       G+R  ++ ++ S+L  C+       G 
Sbjct: 218 SWNAMISGYCQSGN-----AKEALTLSN-----GLRAMDSVTVVSLLSACTEAGDFNRGV 267

Query: 193 QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHG 252
            +H    K  L  +      LI +Y + G L D  K+F  +  +D+++WN++I  Y  + 
Sbjct: 268 TIHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELNE 327

Query: 253 KGEKALRLFDKMKDEGMKPDSITFVAL 279
           +  +A+ LF +M+   ++PD +T ++L
Sbjct: 328 QPLRAISLFQEMRLSRIQPDCLTLISL 354



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/233 (27%), Positives = 109/233 (46%), Gaps = 20/233 (8%)

Query: 107 MISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLR----M 162
           +++ Y   G +  A   F     + V AW  MISGY + G        +  +++R     
Sbjct: 92  LVNLYCYLGNVALARHTFDHIQNRDVYAWNLMISGYGRAG--------NSSEVIRCFSLF 143

Query: 163 MIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGD 222
           M+  G+ P+  +  SVL  C  +     G ++H L  K     D      LI +Y +   
Sbjct: 144 MLSSGLTPDYRTFPSVLKACRTVID---GNKIHCLALKFGFMWDVYVAASLIHLYSRYKA 200

Query: 223 LEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA 282
           + +A  LF E+  +D+ +WNAMISGY Q G  ++AL L + ++      DS+T V+LL A
Sbjct: 201 VGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEALTLSNGLR----AMDSVTVVSLLSA 256

Query: 283 CNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335
           C  AG  + G+    S    +G+ ++      ++DL    G+L +   +  +M
Sbjct: 257 CTEAGDFNRGVT-IHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRM 308



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 53/101 (52%), Gaps = 1/101 (0%)

Query: 184 HLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNA 243
           + ++LQ  K +H  +  S   ++      L+++YC  G++  A   F  IQ +DV  WN 
Sbjct: 63  YCTNLQSAKCLHARLVVSKQIQNVCISAKLVNLYCYLGNVALARHTFDHIQNRDVYAWNL 122

Query: 244 MISGYAQHGKGEKALRLFDK-MKDEGMKPDSITFVALLLAC 283
           MISGY + G   + +R F   M   G+ PD  TF ++L AC
Sbjct: 123 MISGYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKAC 163


>gi|297798510|ref|XP_002867139.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
 gi|297312975|gb|EFH43398.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
          Length = 824

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 225/539 (41%), Positives = 318/539 (58%), Gaps = 24/539 (4%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK----DTASWNTM 76
           G LKD Q++FD++   D++S+N ++    LN   + A    FQ + +     D  +  ++
Sbjct: 296 GSLKDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAIL-LFQEMRLSRIQPDCLTLISL 354

Query: 77  ISGFVQKKNMAKARDLFLAMPEKNSVSW--------SAMISGYIECGQLDKAVELFKVAP 128
            S   Q   +   R +      K    W        +A++  Y + G +D A  +F   P
Sbjct: 355 ASILSQLGEIRACRSVQGFTLRK---GWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLP 411

Query: 129 VKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLG--IRPNASSLSSVLLGCSHLS 186
            K V++W  +ISGY      +N +A + +++  +M   G  I  N  +  SVL  CS   
Sbjct: 412 NKDVISWNTIISGY-----AQNGFASEAIEMYNIMEEEGGEISANQGTWVSVLPACSQAG 466

Query: 187 SLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMIS 246
           +L+ G ++H  + K+ L  D    T L  MY KCG L+DA  LF +I R + V WN +I+
Sbjct: 467 ALRQGMKLHGRLLKNGLYLDVFVGTSLADMYGKCGRLDDALSLFYQIPRVNSVPWNTLIA 526

Query: 247 GYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIA 306
            +  HG GEKA+ LF +M DEG+KPD ITFV LL AC+H+GLVD G   F+ M  DYGI 
Sbjct: 527 CHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGEWCFEMMQTDYGIT 586

Query: 307 AKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMN 366
               HY CMVDL GRAG+L  A++ IK MP +P  +I+G LLSACRVH  +DL + A+ +
Sbjct: 587 PSLKHYGCMVDLYGRAGQLEIALNFIKSMPLQPDASIWGALLSACRVHGNVDLGKIASEH 646

Query: 367 LFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFR 426
           LF + P +  G +V L+N+YA+  KW+ V  IR       + K PG+S +EV   V  F 
Sbjct: 647 LFEVEPEH-VGYHVLLSNMYASAGKWEGVDEIRSITSGKGLRKTPGWSSMEVDNKVEVFY 705

Query: 427 SGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFG 486
           +G++ HP    ++ +L  L +++K+ GYVPD  F L  V ++ KE +L+ HSE+LA+AF 
Sbjct: 706 TGNQTHPMYEEMYRELTALHEKLKMVGYVPDHRFVLQDVEDDEKEHILMSHSERLAMAFA 765

Query: 487 LIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           LI  P  T IR+FKNLRVCGDCH  TK+IS I +REIIVRD+ RFHHFK+G CSCGDYW
Sbjct: 766 LITTPAKTTIRIFKNLRVCGDCHSVTKFISKITEREIIVRDSNRFHHFKNGVCSCGDYW 824



 Score = 98.2 bits (243), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 68/230 (29%), Positives = 114/230 (49%), Gaps = 14/230 (6%)

Query: 107 MISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRM-MIG 165
           +++ Y   G +  A   F     + V AW  MISGY + GY     + + ++   + M+ 
Sbjct: 92  LVNLYCYLGNVALARYTFDHIHNRDVYAWNLMISGYGRAGY-----SSEVIRCFSLFMLS 146

Query: 166 LGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLED 225
            G++P+  +  SVL  C +++    G ++H L  K     D      LI +YC+ G + +
Sbjct: 147 SGLQPDYRTFPSVLKACRNVTD---GNKIHCLALKFGFMWDVYVAASLIHLYCRYGAVVN 203

Query: 226 ACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNH 285
           A  LF E+  +D+ +WNAMISGY Q G  ++AL L D ++      DS+T V+LL AC  
Sbjct: 204 ARILFDEMPTRDMGSWNAMISGYCQSGNAKEALTLSDGLR----AMDSVTVVSLLSACTE 259

Query: 286 AGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335
           AG  + G+    S    +G+ ++      ++DL    G L +   +  +M
Sbjct: 260 AGDFNRGVT-IHSYSIKHGLESELFVSNKLIDLYAEFGSLKDCQKVFDRM 308



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 66/267 (24%), Positives = 121/267 (45%), Gaps = 20/267 (7%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCI--LLNSDDVVAAFDFFQRLPIKDTASWNTMIS 78
           G +  A+  FD I   DV ++N+M+S       S +V+  F  F  L       + T  S
Sbjct: 100 GNVALARYTFDHIHNRDVYAWNLMISGYGRAGYSSEVIRCFSLFM-LSSGLQPDYRTFPS 158

Query: 79  GFVQKKNMAKARDLFLAMPEKNSVSW-----SAMISGYIECGQLDKAVELFKVAPVKSVV 133
                +N+     +   +  K    W     +++I  Y   G +  A  LF   P + + 
Sbjct: 159 VLKACRNVTDGNKIH-CLALKFGFMWDVYVAASLIHLYCRYGAVVNARILFDEMPTRDMG 217

Query: 134 AWTAMISGYMKFGYVENSWA-EDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGK 192
           +W AMISGY + G  + +    DGL+ +          ++ ++ S+L  C+       G 
Sbjct: 218 SWNAMISGYCQSGNAKEALTLSDGLRAM----------DSVTVVSLLSACTEAGDFNRGV 267

Query: 193 QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHG 252
            +H    K  L  +      LI +Y + G L+D  K+F  +  +D+++WN++I  Y  + 
Sbjct: 268 TIHSYSIKHGLESELFVSNKLIDLYAEFGSLKDCQKVFDRMYVRDLISWNSIIKAYELNE 327

Query: 253 KGEKALRLFDKMKDEGMKPDSITFVAL 279
           +  +A+ LF +M+   ++PD +T ++L
Sbjct: 328 QPLRAILLFQEMRLSRIQPDCLTLISL 354



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 73/164 (44%), Gaps = 21/164 (12%)

Query: 184 HLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNA 243
           + ++LQ  K +H  +  S   ++      L+++YC  G++  A   F  I  +DV  WN 
Sbjct: 63  YCTNLQSAKCLHARLVVSNAIQNVCISAKLVNLYCYLGNVALARYTFDHIHNRDVYAWNL 122

Query: 244 MISGYAQHGKGEKALRLFDK-MKDEGMKPDSITFVALLLACN--------HAGLVDLGIQ 294
           MISGY + G   + +R F   M   G++PD  TF ++L AC         H   +  G  
Sbjct: 123 MISGYGRAGYSSEVIRCFSLFMLSSGLQPDYRTFPSVLKACRNVTDGNKIHCLALKFGFM 182

Query: 295 YFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 338
           +      D  +AA   H  C      R G +V A  L  +MP +
Sbjct: 183 W------DVYVAASLIHLYC------RYGAVVNARILFDEMPTR 214


>gi|414872095|tpg|DAA50652.1| TPA: hypothetical protein ZEAMMB73_776700 [Zea mays]
          Length = 647

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 220/575 (38%), Positives = 320/575 (55%), Gaps = 47/575 (8%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
           N +L  +A   G    A+ LF++IP+ +V+S+NI++   + N D +  A   F  +P ++
Sbjct: 81  NHLLLAYADL-GDFPTARGLFERIPKRNVMSWNILIGGYVKNGD-LETARKLFDEMPARN 138

Query: 70  TASWNTMISGFVQKKNMAKARDLFLAMP-------------------------------- 97
            A+WN M++G        ++   F AM                                 
Sbjct: 139 VATWNAMVAGLTNSGLNEESLGFFFAMRREGMQPDEYGLGSLFRCCAGLRDVVSGRQVHA 198

Query: 98  -------EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVEN 150
                  +++    S++   Y+ CG L       +  P  ++V+    ISG       +N
Sbjct: 199 YVVRSGLDRDMCVGSSLAHMYMRCGFLRDGEAALRALPSLNIVSCNTTISGR-----TQN 253

Query: 151 SWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTAL 210
             AE  L+   +M G G+  NA +  S +  CS L++L  G+Q+H L  K+ + K    +
Sbjct: 254 GDAEGALEFFCLMRGAGVEANAVTFVSAVTSCSDLAALAQGQQIHALAIKTGVDKVVPVM 313

Query: 211 TPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMK 270
           T L+ MY +CG L D+ ++ LE    D+V  +AMIS Y  HG G+KA+ LF +M   G +
Sbjct: 314 TSLVHMYSRCGCLGDSERVCLEYSGTDLVLCSAMISAYGFHGHGQKAVGLFKQMMAAGAE 373

Query: 271 PDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVD 330
           P+ +TF+ LL AC+H+GL D G+  F+ M   YG+     HYTC+VDLLGR+G L EA D
Sbjct: 374 PNEVTFLTLLYACSHSGLKDEGMNCFELMTKTYGLQPSVKHYTCIVDLLGRSGCLNEAED 433

Query: 331 LIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMK 390
           LI  MP +P   I+ TLLSAC+  K+ D+AE  A  +  L+P ++A  YV L+NI A   
Sbjct: 434 LILSMPVQPDGVIWKTLLSACKTQKKFDMAERIAERVIELDPHDSAS-YVLLSNIRATSS 492

Query: 391 KWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMK 450
           +W+DV+++R +M+E NV K PG SW+E+   +H+F +GD  H     I E L+E+  R++
Sbjct: 493 RWEDVSKVRETMREQNVRKEPGVSWVELKGQIHQFCTGDESHSRQREIVECLEEMMTRIR 552

Query: 451 LAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHR 510
             GY PD+    H + +E KE  L  HSEKLAIAF  + +P G PIRV KNLRVC DCH 
Sbjct: 553 QCGYAPDMSMVFHDMEDEEKEVSLAHHSEKLAIAFAFLSLPEGVPIRVMKNLRVCDDCHV 612

Query: 511 ATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           A K +S +  REI+VRD +RFHHFKDG CSCGDYW
Sbjct: 613 AIKLMSKVIGREIVVRDVSRFHHFKDGKCSCGDYW 647



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 27/166 (16%)

Query: 147 YVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKD 206
           + E  W+E GL                  S +   C    +L L +Q+H     S    D
Sbjct: 37  FREGLWSEPGL-----------------FSHIFRACQ---ALPLLRQLHAFAATSGAAAD 76

Query: 207 TTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKD 266
                 L+  Y   GD   A  LF  I +++V++WN +I GY ++G  E A +LFD+M  
Sbjct: 77  RFTANHLLLAYADLGDFPTARGLFERIPKRNVMSWNILIGGYVKNGDLETARKLFDEMPA 136

Query: 267 EGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY 312
             +     T+ A++    ++GL +  + +F +M  +     +PD Y
Sbjct: 137 RNVA----TWNAMVAGLTNSGLNEESLGFFFAMRRE---GMQPDEY 175


>gi|449442481|ref|XP_004139010.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Cucumis sativus]
 gi|449505311|ref|XP_004162432.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Cucumis sativus]
          Length = 679

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 203/473 (42%), Positives = 301/473 (63%), Gaps = 6/473 (1%)

Query: 73  WNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSV 132
           WN +I G+ +  ++ KA +LF +MP+K++ SW+++I+G+++ G + +A ELF   P K+V
Sbjct: 213 WNVLIHGYCRMGDLVKATELFDSMPKKDTGSWNSLINGFMKMGDMGRAKELFVKMPEKNV 272

Query: 133 VAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGK 192
           V+WT M++G+      +N   E  L+    M+  G RPN  ++ S L  C+ + +L  G 
Sbjct: 273 VSWTTMVNGF-----SQNGDPEKALETFFCMLEEGARPNDYTIVSALSACAKIGALDAGL 327

Query: 193 QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHG 252
           ++H  +  +    +    T L+ MY KCG++E A K+F E + K ++ W+ MI G+A HG
Sbjct: 328 RIHNYLSGNGFKLNLVIGTALVDMYAKCGNIEHAEKVFHETKEKGLLIWSVMIWGWAIHG 387

Query: 253 KGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY 312
              KAL+ F+ MK  G KPDS+ F+A+L AC+H+G V+ G+++FD+M   Y I     HY
Sbjct: 388 HFRKALQYFEWMKFTGTKPDSVVFLAVLNACSHSGQVNEGLKFFDNMRRGYLIEPSMKHY 447

Query: 313 TCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNP 372
           T +VD+LGRAG+L EA+  I+ MP  P   ++G L  ACR HK +++AE A+  L  L P
Sbjct: 448 TLVVDMLGRAGRLDEALKFIRAMPITPDFVVWGALFCACRTHKNVEMAELASKKLLQLEP 507

Query: 373 ANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVH 432
            +  G YV L+N YA++ +WDD  R+R+SM+++   K PG+S+IEV   +H F +GD  H
Sbjct: 508 KHP-GSYVFLSNAYASVGRWDDAERVRVSMRDHGAHKDPGWSFIEVDHKLHRFVAGDNTH 566

Query: 433 PELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPL 492
              V I+ KL E+    +  GY  ++E  LH + EE KE+ L +HSEKLA+AFG++    
Sbjct: 567 NRAVEIYSKLDEISASAREKGYTKEIECVLHNIEEEEKEEALGYHSEKLALAFGIVSTRP 626

Query: 493 GTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           GT +R+ KNLRVC DCH   KY S + KREII+RD  RFHHF DG CSCGDYW
Sbjct: 627 GTTVRIVKNLRVCVDCHSFMKYASKMSKREIILRDMKRFHHFNDGVCSCGDYW 679



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 72/311 (23%), Positives = 122/311 (39%), Gaps = 76/311 (24%)

Query: 88  KARDLFLAMPEKNSVSWSAMISGYIE-CGQL---DKAVELFKVAPVKSVVAWTAMISGYM 143
           K R +   +   N  S S +++ +I  C  L   D A+ +F+   +K+   + A+I G  
Sbjct: 57  KLRQIHGQLYRCNVFSSSRVVTQFISSCSSLNSVDYAISIFQRFELKNSYLFNALIRGL- 115

Query: 144 KFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPL 203
                ENS  E  +    +M+   I P+  +   VL   + LS+  +G+ +H  + K  L
Sbjct: 116 ----AENSRFESSISFFVLMLKWKISPDRLTFPFVLKSAAALSNGGVGRALHCGILKFGL 171

Query: 204 CKDTTALTPLISMYCKC-----------------------------------GDLEDACK 228
             D+     L+ MY K                                    GDL  A +
Sbjct: 172 EFDSFVRVSLVDMYVKVEELGSALKVFDESPESVKNGSVLIWNVLIHGYCRMGDLVKATE 231

Query: 229 LFLEIQRKDVVTWNA-------------------------------MISGYAQHGKGEKA 257
           LF  + +KD  +WN+                               M++G++Q+G  EKA
Sbjct: 232 LFDSMPKKDTGSWNSLINGFMKMGDMGRAKELFVKMPEKNVVSWTTMVNGFSQNGDPEKA 291

Query: 258 LRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVD 317
           L  F  M +EG +P+  T V+ L AC   G +D G++  + +  + G        T +VD
Sbjct: 292 LETFFCMLEEGARPNDYTIVSALSACAKIGALDAGLRIHNYLSGN-GFKLNLVIGTALVD 350

Query: 318 LLGRAGKLVEA 328
           +  + G +  A
Sbjct: 351 MYAKCGNIEHA 361



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 55/251 (21%), Positives = 104/251 (41%), Gaps = 35/251 (13%)

Query: 192 KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQH 251
           +Q+H  +++  +   +  +T  IS       ++ A  +F   + K+   +NA+I G A++
Sbjct: 59  RQIHGQLYRCNVFSSSRVVTQFISSCSSLNSVDYAISIFQRFELKNSYLFNALIRGLAEN 118

Query: 252 GKGEKALRLFDKMKDEGMKPDSITFVALLLACN-----------HAGLVDLGIQYFDSMV 300
            + E ++  F  M    + PD +TF  +L +             H G++  G++ FDS V
Sbjct: 119 SRFESSISFFVLMLKWKISPDRLTFPFVLKSAAALSNGGVGRALHCGILKFGLE-FDSFV 177

Query: 301 NDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLA 360
                         +VD+  +  +L  A+ +  + P   +      L+    +H    + 
Sbjct: 178 R-----------VSLVDMYVKVEELGSALKVFDESPESVKNG--SVLIWNVLIHGYCRMG 224

Query: 361 EFA-AMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVG 419
           +   A  LF+  P    G +  L N +  M        + + M E NVV     SW    
Sbjct: 225 DLVKATELFDSMPKKDTGSWNSLINGFMKMGDMGRAKELFVKMPEKNVV-----SWT--- 276

Query: 420 TVVHEF-RSGD 429
           T+V+ F ++GD
Sbjct: 277 TMVNGFSQNGD 287


>gi|449460574|ref|XP_004148020.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Cucumis sativus]
          Length = 816

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 209/555 (37%), Positives = 328/555 (59%), Gaps = 18/555 (3%)

Query: 3   VKTTVNWN----SVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAA 58
           +KT   WN    + L  +  +  ++ +  +LF ++P+ D +SYN++++    N      +
Sbjct: 268 LKTNFVWNVFVGNALLDYYSKHDQVDEVGKLFYEMPELDGISYNVVITSYAWNGQ-FKES 326

Query: 59  FDFFQRLPI----KDTASWNTMISGFVQKKNMAKARDL----FLAMPEKNSVSWSAMISG 110
           FD F++L      +    + T++S      N+   R +            S   +A++  
Sbjct: 327 FDLFRKLQFTRFDRRQFPFATLLSIATSSLNLRMGRQIHCQAITVGANFESRVENALVDM 386

Query: 111 YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRP 170
           Y +C    +A ++F     KS V WTAMIS Y++ G       E+G+ +   M   G+  
Sbjct: 387 YAKCNGDKEAQKIFDNIACKSTVPWTAMISAYVQKGK-----HEEGINVFSDMRRTGVPA 441

Query: 171 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 230
           + ++ +S+L  C++L+S+ LG+Q+H L+ +S    +  + + L+  Y KCG + DA K F
Sbjct: 442 DQATFASILRACANLASISLGRQLHSLLIRSGFMSNVYSGSALLDTYAKCGCMTDAIKSF 501

Query: 231 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVD 290
            E+  ++ V+WNA+IS YAQ+G  +  L  F +M   G KPDS++F+++L AC+H G V+
Sbjct: 502 GEMPERNSVSWNALISAYAQNGNVDGTLNSFQQMIQSGYKPDSVSFLSVLSACSHCGFVE 561

Query: 291 LGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSA 350
             + +F+SM   Y +  K +HYT MVD+L R G+  EA  L+ +MPF+P   ++ ++L++
Sbjct: 562 EALWHFNSMTQIYEVTPKREHYTSMVDVLCRNGRFDEAEKLMTEMPFEPSEIMWSSVLNS 621

Query: 351 CRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKM 410
           CR+HK  +LA+ AA  LFN+     A  Y+ ++NIYA   +WD+VA+++ +M++  V K+
Sbjct: 622 CRIHKNHELAKKAADRLFNMEDLRDAAPYINMSNIYAVAGQWDNVAKVKKAMRDRGVRKV 681

Query: 411 PGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVK 470
           P YSW+E+    H F + D+ HPE+  I  K+  L K M+  GY PD   ALH V E +K
Sbjct: 682 PAYSWVEIKHQTHVFSANDKSHPEMKKILRKINALSKEMEKKGYKPDTTCALHDVDEVIK 741

Query: 471 EQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTR 530
            + L +HSE+ AIAF L+  P G+PI V KNLR C DCH A K IS I +REIIVRD++R
Sbjct: 742 IESLKYHSERFAIAFALMNTPDGSPIVVMKNLRACTDCHAAIKVISQIVEREIIVRDSSR 801

Query: 531 FHHFKDGTCSCGDYW 545
           FHHFKDG CSCGDYW
Sbjct: 802 FHHFKDGVCSCGDYW 816



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 69/214 (32%), Positives = 120/214 (56%), Gaps = 5/214 (2%)

Query: 69  DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAP 128
           +T   N  ++ F+++ ++  A  +F  MP KN++S + MISG+++ G+L KA ELF    
Sbjct: 42  NTCRSNFQVNNFLERGDLVHAHQVFDQMPAKNTISLNMMISGHLKFGKLSKARELFDGMV 101

Query: 129 VKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSL 188
            ++ V+WT +I GY+     +++ +++  +L   M   GI P+  +L ++L G   L + 
Sbjct: 102 ERTAVSWTILIGGYL-----QSNQSKEAFRLYADMRRGGIEPDYVTLVTLLSGFGELETK 156

Query: 189 QLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGY 248
            +  Q+H  V K     +      L+  YCK   L  A +LF  +  KD VT+N++++GY
Sbjct: 157 NVIVQIHTHVIKLGYEYNLMVCNSLVDAYCKTHCLYLASQLFKHMLNKDTVTFNSLMTGY 216

Query: 249 AQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA 282
           +  G  E+A+ LF ++ + G+KP   TF ALL A
Sbjct: 217 SNEGLNEEAIELFLELHNSGIKPSDFTFAALLSA 250



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 96/425 (22%), Positives = 171/425 (40%), Gaps = 82/425 (19%)

Query: 3   VKTTVNWNSVLAGFAK----QRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAA 58
           VKT  N N+  + F      +RG L  A ++FD++P  + +S N+M+S   L    +  A
Sbjct: 35  VKTGFNPNTCRSNFQVNNFLERGDLVHAHQVFDQMPAKNTISLNMMISG-HLKFGKLSKA 93

Query: 59  FDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMISGYIE- 113
            + F  +  +   SW  +I G++Q     +A  L+  M     E + V+   ++SG+ E 
Sbjct: 94  RELFDGMVERTAVSWTILIGGYLQSNQSKEAFRLYADMRRGGIEPDYVTLVTLLSGFGEL 153

Query: 114 ------------------------CGQLDKAV----------ELFKVAPVKSVVAWTAMI 139
                                   C  L  A           +LFK    K  V + +++
Sbjct: 154 ETKNVIVQIHTHVIKLGYEYNLMVCNSLVDAYCKTHCLYLASQLFKHMLNKDTVTFNSLM 213

Query: 140 SGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVF 199
           +GY   G       E+ ++L   +   GI+P+  + +++L     L   + G+QVH  V 
Sbjct: 214 TGYSNEGL-----NEEAIELFLELHNSGIKPSDFTFAALLSAAVGLDDTKFGQQVHGFVL 268

Query: 200 KSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALR 259
           K+    +      L+  Y K   +++  KLF E+   D +++N +I+ YA +G+ +++  
Sbjct: 269 KTNFVWNVFVGNALLDYYSKHDQVDEVGKLFYEMPELDGISYNVVITSYAWNGQFKESFD 328

Query: 260 LFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQY----------FDSMVNDY------ 303
           LF K++          F  LL     +  + +G Q           F+S V +       
Sbjct: 329 LFRKLQFTRFDRRQFPFATLLSIATSSLNLRMGRQIHCQAITVGANFESRVENALVDMYA 388

Query: 304 -------------GIAAKPD-HYTCMVDLLGRAGKLVEAVDLIKKMPFKPQP---AIFGT 346
                         IA K    +T M+    + GK  E +++   M     P   A F +
Sbjct: 389 KCNGDKEAQKIFDNIACKSTVPWTAMISAYVQKGKHEEGINVFSDMRRTGVPADQATFAS 448

Query: 347 LLSAC 351
           +L AC
Sbjct: 449 ILRAC 453


>gi|297734119|emb|CBI15366.3| unnamed protein product [Vitis vinifera]
          Length = 783

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 220/549 (40%), Positives = 323/549 (58%), Gaps = 39/549 (7%)

Query: 1   MNVKTTVNWNSVLAGFAKQ---RGKLKDAQELFDKIPQPDVVSY-NIMLSCILLNSDDVV 56
           M+ KT  +WN++L G+A+    R  L    ++ D    PD  +  +++L+C  + S    
Sbjct: 270 MDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKS---- 325

Query: 57  AAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQ 116
                           +   I GF  +  +A   D F+ +         +++S YI CG+
Sbjct: 326 --------------LHYGEEIHGFALRNGLAV--DPFIGI---------SLLSLYICCGK 360

Query: 117 LDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLS 176
              A  LF     +S+V+W  MI+GY      +N   ++ + L R M+  GI+P   ++ 
Sbjct: 361 PFAAQVLFDGMEHRSLVSWNVMIAGY-----SQNGLPDEAINLFRQMLSDGIQPYEIAIM 415

Query: 177 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK 236
            V   CS LS+L+LGK++H    K+ L +D    + +I MY K G +  + ++F  ++ K
Sbjct: 416 CVCGACSQLSALRLGKELHCFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLREK 475

Query: 237 DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYF 296
           DV +WN +I+GY  HG+G++AL LF+KM   G+KPD  TF  +L+AC+HAGLV+ G++YF
Sbjct: 476 DVASWNVIIAGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGILMACSHAGLVEDGLEYF 535

Query: 297 DSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKR 356
           + M+N + I  K +HYTC+VD+LGRAG++ +A+ LI++MP  P   I+ +LLS+CR+H  
Sbjct: 536 NQMLNLHNIEPKLEHYTCVVDMLGRAGRIDDALRLIEEMPGDPDSRIWSSLLSSCRIHGN 595

Query: 357 LDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWI 416
           L L E  A  L  L P      YV ++N++A   KWDDV R+R  MK+  + K  G SWI
Sbjct: 596 LGLGEKVANKLLELEPEKPEN-YVLISNLFAGSGKWDDVRRVRGRMKDIGLQKDAGCSWI 654

Query: 417 EVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLF 476
           EVG  VH F  GD + PEL  + E  + LE ++   GY PD    LH + EE K  +L  
Sbjct: 655 EVGGKVHNFLIGDEMLPELEEVRETWRRLEVKISSIGYTPDTGSVLHDLEEEDKIGILRG 714

Query: 477 HSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKD 536
           HSEKLAI+FGL+    G P+RV+KNLR+CGDCH A K+IS +  R+I+VRD  RFHHF+D
Sbjct: 715 HSEKLAISFGLLNTAKGLPVRVYKNLRICGDCHNAAKFISKVVNRDIVVRDNKRFHHFRD 774

Query: 537 GTCSCGDYW 545
           G CSCGDYW
Sbjct: 775 GICSCGDYW 783



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 75/250 (30%), Positives = 122/250 (48%), Gaps = 19/250 (7%)

Query: 49  LLNSDDVVAAFDFFQRLP---IKDTA----SWNTMISGFVQKKNMAKARDLFLAMPEKNS 101
           L  S ++  A DF QR     + D+A    +   ++    Q+K++   R L   +     
Sbjct: 77  LCESGNLKEALDFLQRESDDVVLDSAQRSEAMGVLLQACGQRKDIEVGRRLHEMVSASTQ 136

Query: 102 -----VSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDG 156
                V  + +I+ Y  CG    +  +F     K++  W A++S Y +     N   ED 
Sbjct: 137 FCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRRKNLFQWNAIVSAYTR-----NELFEDA 191

Query: 157 LKLLRMMIGLGI-RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLIS 215
           + +   +I +   +P+  +L  V+  C+ L  L LG+ +H +  K  L  D      LI+
Sbjct: 192 MSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGLGQIIHGMATKMDLVSDVFVGNALIA 251

Query: 216 MYCKCGDLEDACK-LFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSI 274
           MY KCG +E+A K +F  +  K V +WNA++ GYAQ+    KAL L+ +M D G+ PD  
Sbjct: 252 MYGKCGLVEEAVKRVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWF 311

Query: 275 TFVALLLACN 284
           T  +LLLAC+
Sbjct: 312 TIGSLLLACS 321


>gi|449492963|ref|XP_004159154.1| PREDICTED: uncharacterized protein LOC101226880 [Cucumis sativus]
          Length = 1725

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 228/563 (40%), Positives = 333/563 (59%), Gaps = 44/563 (7%)

Query: 10   NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLN--SDDVVAAF-DFFQR-- 64
            +S L     + G+LKDA+ LFD+IP  +VVS+  M++  + N  +D+ +  F DF +   
Sbjct: 1180 SSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQADNALLLFKDFLEEET 1239

Query: 65   -------LPIKDTASWNTM--------------ISGFVQKKNMAKARDLFLAMPEKNSVS 103
                   +P+      + +              + GFV KK    +  +           
Sbjct: 1240 EVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKKGFDGSIGV----------- 1288

Query: 104  WSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMM 163
             + ++  Y +CGQ   + ++F     K  ++W +MI+ Y + G      + + L++   M
Sbjct: 1289 GNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGL-----SGEALEVFHGM 1343

Query: 164  I-GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGD 222
            +  +G+R NA +LS+VLL C+H  +L+ GK +H  V K  L  +    T +I MYCKCG 
Sbjct: 1344 VRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGR 1403

Query: 223  LEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA 282
            +E A K F  ++ K+V +W AM++GY  HG+ ++AL +F KM   G+KP+ ITFV++L A
Sbjct: 1404 VEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAA 1463

Query: 283  CNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPA 342
            C+HAGLV+ G  +F++M + Y I    +HY CMVDL GRAG L EA +LIK+M  KP   
Sbjct: 1464 CSHAGLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYNLIKRMKMKPDFV 1523

Query: 343  IFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSM 402
            ++G+LL ACR+HK +DL E AA  LF L+P N  G YV L+N+YA   +W DV R+R+ M
Sbjct: 1524 VWGSLLGACRIHKNVDLGEIAAQKLFELDPDN-CGYYVLLSNLYADAGRWADVERMRMLM 1582

Query: 403  KENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFAL 462
            K   +VK PG+S +E+   VH F  GD+ HP    I++ L++L   ++  GYVP++   L
Sbjct: 1583 KNRQLVKPPGFSLVELKGRVHVFLVGDKEHPHHEMIYKYLEKLTLELQKIGYVPNMTSVL 1642

Query: 463  HAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKRE 522
            H V EE KE +L  HSEKLA+AFG++    GT I + KNLRVCGDCH   K IS +  R+
Sbjct: 1643 HDVDEEEKEIILRVHSEKLAVAFGVMNSAPGTTINIIKNLRVCGDCHTVIKLISKLVHRD 1702

Query: 523  IIVRDTTRFHHFKDGTCSCGDYW 545
             +VRD+ RFHHFKDG CSCGDYW
Sbjct: 1703 FVVRDSKRFHHFKDGVCSCGDYW 1725



 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 100/262 (38%), Positives = 149/262 (56%), Gaps = 5/262 (1%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVV 133
           N +I  + +  +   A  +F  M  +N VSW+ +ISG I CG L +A  +F   P K+VV
Sbjct: 164 NNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVV 223

Query: 134 AWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ 193
           +WTAMI+GY++     N   E+ L+L + M    I PN  ++ S++  C+ +  L LG+ 
Sbjct: 224 SWTAMINGYIR-----NQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRG 278

Query: 194 VHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGK 253
           +H    K+ +       T LI MY KCG ++DA ++F  + RK + TWN+MI+    HG 
Sbjct: 279 IHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGL 338

Query: 254 GEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYT 313
           G++AL LF +M+   +KPD+ITF+ +L AC H   V  G  YF  M   YGIA  P+HY 
Sbjct: 339 GQEALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIPEHYE 398

Query: 314 CMVDLLGRAGKLVEAVDLIKKM 335
           CM +L  R+  L EA    K++
Sbjct: 399 CMTELYARSNNLDEAFKSTKEV 420



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 79/299 (26%), Positives = 134/299 (44%), Gaps = 40/299 (13%)

Query: 107 MISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGL 166
           +I  Y   G++  A+ LF          W  +I          N  +E  L L + M+  
Sbjct: 65  LIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRAN-----TINGLSEQALMLYKNMVCQ 119

Query: 167 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCG----- 221
           GI  +  +   V+  C++  S+ LGK VH  + K     D      LI  Y KCG     
Sbjct: 120 GIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFA 179

Query: 222 --------------------------DLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGE 255
                                     DL++A ++F EI  K+VV+W AMI+GY ++ + E
Sbjct: 180 LKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPE 239

Query: 256 KALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCM 315
           +AL LF +M+ E + P+  T V+L+ AC   G++ LG    D  + +  I       T +
Sbjct: 240 EALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNC-IEIGVYLGTAL 298

Query: 316 VDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVH--KRLDLAEFAAMNLFNLNP 372
           +D+  + G + +A+++ + MP K  P  + +++++  VH   +  L  F+ M   N+ P
Sbjct: 299 IDMYSKCGSIKDAIEVFETMPRKSLPT-WNSMITSLGVHGLGQEALNLFSEMERVNVKP 356



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/173 (31%), Positives = 84/173 (48%), Gaps = 13/173 (7%)

Query: 120  AVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVL 179
            A   +K     +V +W ++I+   + G      + + L+    +  LG+ P  SS    +
Sbjct: 1095 ATWFYKYVDKSNVHSWNSVIADLARGGD-----SVEALRAFSSLRKLGLIPTRSSFPCTI 1149

Query: 180  LGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVV 239
              CS L  L  G+  HQ  F      D    + LI MY KCG L+DA  LF EI  ++VV
Sbjct: 1150 KSCSALCDLVSGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVV 1209

Query: 240  TWNAMISGYAQHGKGEKALRLFDKMKDE--------GMKPDSITFVALLLACN 284
            +W +MI+GY Q+ + + AL LF    +E         +  DS+  V++L AC+
Sbjct: 1210 SWTSMITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACS 1262



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 60/264 (22%), Positives = 115/264 (43%), Gaps = 52/264 (19%)

Query: 13  LAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTAS 72
           L  F  + G  + A ++F+K+   +VVS+  ++S  L++  D+  A   F  +P K+  S
Sbjct: 166 LIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISG-LISCGDLQEARRIFDEIPSKNVVS 224

Query: 73  WNTMISGFVQKKNMAKARDLFLAMPEKNSVS----------------------------- 103
           W  MI+G+++ +   +A +LF  M  +N                                
Sbjct: 225 WTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAI 284

Query: 104 ----------WSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWA 153
                      +A+I  Y +CG +  A+E+F+  P KS+  W +MI+     G       
Sbjct: 285 KNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGL-----G 339

Query: 154 EDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLG----KQVHQLVFKSPLCKDTTA 209
           ++ L L   M  + ++P+A +   VL  C H+ +++ G     ++ Q    +P+ +    
Sbjct: 340 QEALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIPEHYEC 399

Query: 210 LTPLISMYCKCGDLEDACKLFLEI 233
           +T L   Y +  +L++A K   E+
Sbjct: 400 MTEL---YARSNNLDEAFKSTKEV 420



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 72/158 (45%), Gaps = 4/158 (2%)

Query: 178 VLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKD 237
           +L  C +   L   +Q+H  + +S L  D      LI +Y   G +  A  LF +IQ   
Sbjct: 33  LLQNCKNFKHL---RQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPC 89

Query: 238 VVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFD 297
             TWN +I     +G  E+AL L+  M  +G+  D  TF  ++ AC +   +DLG     
Sbjct: 90  TFTWNLIIRANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHG 149

Query: 298 SMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335
           S++  YG +        ++D   + G    A+ + +KM
Sbjct: 150 SLIK-YGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKM 186



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 87/367 (23%), Positives = 139/367 (37%), Gaps = 88/367 (23%)

Query: 1    MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYN-IMLSCILLNSDDVVA-- 57
            M  K  ++WNS++A +A Q G   +A E+F  + +   V YN + LS +LL      A  
Sbjct: 1312 MEEKDDISWNSMIAVYA-QSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALR 1370

Query: 58   AFDFFQRLPIKDTASWN-----TMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYI 112
            A        IK    +N     ++I  + +   +  A+  F  M EKN  SW+AM++GY 
Sbjct: 1371 AGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYG 1430

Query: 113  ECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNA 172
              G+  +A+++F                                      M+  G++PN 
Sbjct: 1431 MHGRAKEALDIF------------------------------------YKMVRAGVKPNY 1454

Query: 173  SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLE 232
             +  SVL  CSH   ++ G      +      K    + P I  Y               
Sbjct: 1455 ITFVSVLAACSHAGLVEEGWHWFNAM------KHKYDIEPGIEHY--------------- 1493

Query: 233  IQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 292
                       M+  + + G   +A  L  +MK   MKPD + + +LL AC     VDLG
Sbjct: 1494 ---------GCMVDLFGRAGCLNEAYNLIKRMK---MKPDFVVWGSLLGACRIHKNVDLG 1541

Query: 293  IQYFDSMVNDYGIAAKPD---HYTCMVDLLGRAGKL--VEAVDLIKKMPFKPQPAIFGTL 347
                  +         PD   +Y  + +L   AG+   VE + ++ K     +P  F  +
Sbjct: 1542 -----EIAAQKLFELDPDNCGYYVLLSNLYADAGRWADVERMRMLMKNRQLVKPPGFSLV 1596

Query: 348  LSACRVH 354
                RVH
Sbjct: 1597 ELKGRVH 1603


>gi|115471325|ref|NP_001059261.1| Os07g0239600 [Oryza sativa Japonica Group]
 gi|33146689|dbj|BAC80084.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50510012|dbj|BAD30625.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610797|dbj|BAF21175.1| Os07g0239600 [Oryza sativa Japonica Group]
          Length = 720

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 224/579 (38%), Positives = 329/579 (56%), Gaps = 52/579 (8%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIML-SCILLNSDDVVAAFDFFQRLPIK 68
           N+VL  +AK  G+ + A+ +F  + + D VS+NI + +CI   S D++ +   F   P++
Sbjct: 151 NAVLDMYAKC-GQFERARRVFGAMAERDAVSWNIAIGACI--QSGDILGSMQLFDESPLR 207

Query: 69  DTASWNTMISGFVQK----------KNMAKARDLF------------------------- 93
           DT SWNT+ISG ++           + MA+A  +F                         
Sbjct: 208 DTTSWNTIISGLMRSGHAADALSHLRRMAQAGVVFNHYTYSTAFVLAGMLLLPDLGRQLH 267

Query: 94  ----LAMPEKNSVSWSAMISGYIECGQLDKAVELF-KVAPVKSVV--AWTAMISGYMKFG 146
               +A  E ++   S+++  Y +CG L+ A  +F   +P+   +  AW+ M++GY    
Sbjct: 268 GRVLIAALEGDAFVRSSLMDMYCKCGLLEAAASVFDHWSPLTRDMNFAWSTMVAGY---- 323

Query: 147 YVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKD 206
            V+N   E+ L L R M+  G+  +  +L+SV   C+++  ++ G+QVH  V K     D
Sbjct: 324 -VQNGREEEALDLFRRMLREGVAADRFTLTSVAAACANVGMVEQGRQVHGCVEKLWYKLD 382

Query: 207 TTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKD 266
               + ++ MY KCG+LEDA  +F     K++  W +M+  YA HG+G  A+ LF++M  
Sbjct: 383 APLASAIVDMYAKCGNLEDARSIFDRACTKNIAVWTSMLCSYASHGQGRIAIELFERMTA 442

Query: 267 EGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLV 326
           E M P+ IT V +L AC+H GLV  G  YF  M  +YGI    +HY C+VDL GR+G L 
Sbjct: 443 EKMTPNEITLVGVLSACSHVGLVSEGELYFKQMQEEYGIVPSIEHYNCIVDLYGRSGLLD 502

Query: 327 EAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIY 386
           +A + I++     +  ++ TLLSACR+H+  + A+ A+  L  L   +A G YV L+NIY
Sbjct: 503 KAKNFIEENNINHEAIVWKTLLSACRLHQHNEYAKLASEKLVQLEQCDA-GSYVMLSNIY 561

Query: 387 AAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELE 446
           A   KW D   +R+SM+E  V K PG SWI +   VH F +GD  HP+   I+  L++L 
Sbjct: 562 ATNNKWHDTFELRVSMQERKVRKQPGRSWIHLKNTVHTFVAGDASHPQSAEIYAYLEKLV 621

Query: 447 KRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCG 506
           +R+K  GY    +  +H V +E +E  L FHSEKLAIAFG+I  P GTP+R+FKNLRVC 
Sbjct: 622 ERLKEIGYTSRTDLVVHDVEDEQRETALKFHSEKLAIAFGIISTPSGTPLRIFKNLRVCE 681

Query: 507 DCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           DCH A KYIS    REI+VRD  RFHHFKD +CSC D+W
Sbjct: 682 DCHEAIKYISLATGREIVVRDLYRFHHFKDASCSCEDFW 720



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 100/384 (26%), Positives = 177/384 (46%), Gaps = 23/384 (5%)

Query: 3   VKTTVNWNSVLAGFAKQRGKLKDAQELFDKI-----PQPDVVSYNIMLSCIL----LNSD 53
            +T   W   ++G A+ RG+  D    F ++       P+      ++ C      + S 
Sbjct: 73  TRTAPVWTLTISGCAR-RGRYADGMRAFAEMLAEGEATPNAFVLAAVVRCCAGMGDVESG 131

Query: 54  DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE 113
             V  +     + + D    N ++  + +     +AR +F AM E+++VSW+  I   I+
Sbjct: 132 KRVHGWMLRNGVHL-DVVLCNAVLDMYAKCGQFERARRVFGAMAERDAVSWNIAIGACIQ 190

Query: 114 CGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNAS 173
            G +  +++LF  +P++   +W  +ISG M+ G+     A D L  LR M   G+  N  
Sbjct: 191 SGDILGSMQLFDESPLRDTTSWNTIISGLMRSGH-----AADALSHLRRMAQAGVVFNHY 245

Query: 174 SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLE- 232
           + S+  +    L    LG+Q+H  V  + L  D    + L+ MYCKCG LE A  +F   
Sbjct: 246 TYSTAFVLAGMLLLPDLGRQLHGRVLIAALEGDAFVRSSLMDMYCKCGLLEAAASVFDHW 305

Query: 233 --IQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVD 290
             + R     W+ M++GY Q+G+ E+AL LF +M  EG+  D  T  ++  AC + G+V+
Sbjct: 306 SPLTRDMNFAWSTMVAGYVQNGREEEALDLFRRMLREGVAADRFTLTSVAAACANVGMVE 365

Query: 291 LGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSA 350
            G Q    +   +     P   + +VD+  + G L +A  +  +   K   A++ ++L +
Sbjct: 366 QGRQVHGCVEKLWYKLDAP-LASAIVDMYAKCGNLEDARSIFDRACTK-NIAVWTSMLCS 423

Query: 351 CRVH--KRLDLAEFAAMNLFNLNP 372
              H   R+ +  F  M    + P
Sbjct: 424 YASHGQGRIAIELFERMTAEKMTP 447



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 71/142 (50%), Gaps = 6/142 (4%)

Query: 123 LFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLG-IRPNASSLSSVLLG 181
           +F   P ++   WT  ISG  + G        DG++    M+  G   PNA  L++V+  
Sbjct: 67  VFDERPTRTAPVWTLTISGCARRGRYA-----DGMRAFAEMLAEGEATPNAFVLAAVVRC 121

Query: 182 CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTW 241
           C+ +  ++ GK+VH  + ++ +  D      ++ MY KCG  E A ++F  +  +D V+W
Sbjct: 122 CAGMGDVESGKRVHGWMLRNGVHLDVVLCNAVLDMYAKCGQFERARRVFGAMAERDAVSW 181

Query: 242 NAMISGYAQHGKGEKALRLFDK 263
           N  I    Q G    +++LFD+
Sbjct: 182 NIAIGACIQSGDILGSMQLFDE 203


>gi|449455978|ref|XP_004145727.1| PREDICTED: uncharacterized protein LOC101212001 [Cucumis sativus]
          Length = 2598

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 228/563 (40%), Positives = 333/563 (59%), Gaps = 44/563 (7%)

Query: 10   NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLN--SDDVVAAF-DFFQR-- 64
            +S L     + G+LKDA+ LFD+IP  +VVS+  M++  + N  +D+ +  F DF +   
Sbjct: 2053 SSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQADNALLLFKDFLEEET 2112

Query: 65   -------LPIKDTASWNTM--------------ISGFVQKKNMAKARDLFLAMPEKNSVS 103
                   +P+      + +              + GFV KK    +  +           
Sbjct: 2113 EVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKKGFDGSIGV----------- 2161

Query: 104  WSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMM 163
             + ++  Y +CGQ   + ++F     K  ++W +MI+ Y + G      + + L++   M
Sbjct: 2162 GNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGL-----SGEALEVFHGM 2216

Query: 164  I-GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGD 222
            +  +G+R NA +LS+VLL C+H  +L+ GK +H  V K  L  +    T +I MYCKCG 
Sbjct: 2217 VRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGR 2276

Query: 223  LEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA 282
            +E A K F  ++ K+V +W AM++GY  HG+ ++AL +F KM   G+KP+ ITFV++L A
Sbjct: 2277 VEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAA 2336

Query: 283  CNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPA 342
            C+HAGLV+ G  +F++M + Y I    +HY CMVDL GRAG L EA +LIK+M  KP   
Sbjct: 2337 CSHAGLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYNLIKRMKMKPDFV 2396

Query: 343  IFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSM 402
            ++G+LL ACR+HK +DL E AA  LF L+P N  G YV L+N+YA   +W DV R+R+ M
Sbjct: 2397 VWGSLLGACRIHKNVDLGEIAAQKLFELDPDN-CGYYVLLSNLYADAGRWADVERMRMLM 2455

Query: 403  KENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFAL 462
            K   +VK PG+S +E+   VH F  GD+ HP    I++ L++L   ++  GYVP++   L
Sbjct: 2456 KNRQLVKPPGFSLVELKGRVHVFLVGDKEHPHHEMIYKYLEKLTLELQKIGYVPNMTSVL 2515

Query: 463  HAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKRE 522
            H V EE KE +L  HSEKLA+AFG++    GT I + KNLRVCGDCH   K IS +  R+
Sbjct: 2516 HDVDEEEKEIILRVHSEKLAVAFGVMNSAPGTTINIIKNLRVCGDCHTVIKLISKLVHRD 2575

Query: 523  IIVRDTTRFHHFKDGTCSCGDYW 545
             +VRD+ RFHHFKDG CSCGDYW
Sbjct: 2576 FVVRDSKRFHHFKDGVCSCGDYW 2598



 Score =  194 bits (492), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 101/267 (37%), Positives = 150/267 (56%), Gaps = 5/267 (1%)

Query: 69  DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAP 128
           D    N +I  + +  +   A  +F  M  +N VSW+ +ISG I CG L +A  +F   P
Sbjct: 159 DVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIP 218

Query: 129 VKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSL 188
            K+VV+WTAMI+GY++     N   E+ L+L + M    I PN  ++ S++  C+ +  L
Sbjct: 219 SKNVVSWTAMINGYIR-----NQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGIL 273

Query: 189 QLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGY 248
            LG+ +H    K+ +       T LI MY KCG ++DA ++F  + RK + TWN+MI+  
Sbjct: 274 TLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSL 333

Query: 249 AQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK 308
             HG G++AL LF +M+   +KPD+ITF+ +L AC H   V  G  YF  M   YGIA  
Sbjct: 334 GVHGLGQEALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQHYGIAPI 393

Query: 309 PDHYTCMVDLLGRAGKLVEAVDLIKKM 335
           P+HY CM +L  R+  L EA    K++
Sbjct: 394 PEHYECMTELYARSNNLDEAFKSTKEV 420



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 81/303 (26%), Positives = 137/303 (45%), Gaps = 48/303 (15%)

Query: 107 MISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGL 166
           +I  Y   G++  A+ LF          W  +I          N  +E  L L + M+  
Sbjct: 65  LIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRAN-----TINGLSEQALMLYKNMVCQ 119

Query: 167 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCG----- 221
           GI  +  +   V+  C++  S+ LGK VH  + K     D      LI  Y KCG     
Sbjct: 120 GIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFA 179

Query: 222 --------------------------DLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGE 255
                                     DL++A ++F EI  K+VV+W AMI+GY ++ + E
Sbjct: 180 LKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPE 239

Query: 256 KALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGI--AAKPDHY- 312
           +AL LF +M+ E + P+  T V+L+ AC   G++ LG       ++DY I    +   Y 
Sbjct: 240 EALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLG-----RGIHDYAIKNCIEIGVYL 294

Query: 313 -TCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVH--KRLDLAEFAAMNLFN 369
            T ++D+  + G + +A+++ + MP K  P  + +++++  VH   +  L  F+ M   N
Sbjct: 295 GTALIDMYSKCGSIKDAIEVFETMPRKSLPT-WNSMITSLGVHGLGQEALNLFSEMERVN 353

Query: 370 LNP 372
           + P
Sbjct: 354 VKP 356



 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 57/196 (29%), Positives = 97/196 (49%), Gaps = 17/196 (8%)

Query: 100  NSVSWSAMISGYIECGQLDK---AVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDG 156
            + +++++++ G +  G+ D    A   +K     +V +W ++I+   + G      + + 
Sbjct: 1946 DGITYNSILFG-VPSGREDHSNLATWFYKYVDKSNVHSWNSVIADLARGGD-----SVEA 1999

Query: 157  LKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISM 216
            L+    +  LG+ P  SS    +  CS L  L  G+  HQ  F      D    + LI M
Sbjct: 2000 LRAFSSLRKLGLIPTRSSFPCTIKSCSALCDLVSGRMSHQQAFVFGFETDLFVSSALIDM 2059

Query: 217  YCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE--------G 268
            Y KCG L+DA  LF EI  ++VV+W +MI+GY Q+ + + AL LF    +E         
Sbjct: 2060 YSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQADNALLLFKDFLEEETEVEDGNN 2119

Query: 269  MKPDSITFVALLLACN 284
            +  DS+  V++L AC+
Sbjct: 2120 VPLDSVVMVSVLSACS 2135



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 60/264 (22%), Positives = 115/264 (43%), Gaps = 52/264 (19%)

Query: 13  LAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTAS 72
           L  F  + G  + A ++F+K+   +VVS+  ++S  L++  D+  A   F  +P K+  S
Sbjct: 166 LIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISG-LISCGDLQEARRIFDEIPSKNVVS 224

Query: 73  WNTMISGFVQKKNMAKARDLFLAMPEKNSVS----------------------------- 103
           W  MI+G+++ +   +A +LF  M  +N                                
Sbjct: 225 WTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAI 284

Query: 104 ----------WSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWA 153
                      +A+I  Y +CG +  A+E+F+  P KS+  W +MI+     G       
Sbjct: 285 KNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGL-----G 339

Query: 154 EDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLG----KQVHQLVFKSPLCKDTTA 209
           ++ L L   M  + ++P+A +   VL  C H+ +++ G     ++ Q    +P+ +    
Sbjct: 340 QEALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIPEHYEC 399

Query: 210 LTPLISMYCKCGDLEDACKLFLEI 233
           +T L   Y +  +L++A K   E+
Sbjct: 400 MTEL---YARSNNLDEAFKSTKEV 420



 Score = 65.1 bits (157), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 56/233 (24%), Positives = 99/233 (42%), Gaps = 15/233 (6%)

Query: 178 VLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKD 237
           +L  C +   L   +Q+H  + +S L  D      LI +Y   G +  A  LF +IQ   
Sbjct: 33  LLQNCKNFKHL---RQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPC 89

Query: 238 VVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFD 297
             TWN +I     +G  E+AL L+  M  +G+  D  TF  ++ AC +   +DLG     
Sbjct: 90  TFTWNLIIRANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHG 149

Query: 298 SMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK---PQPAIFGTLLSACRVH 354
           S++  YG +        ++D   + G    A+ + +KM  +       +   L+S     
Sbjct: 150 SLIK-YGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCG--- 205

Query: 355 KRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNV 407
              DL E  A  +F+  P+     +  + N Y   ++ ++   +   M+  N+
Sbjct: 206 ---DLQE--ARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENI 253



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 87/367 (23%), Positives = 139/367 (37%), Gaps = 88/367 (23%)

Query: 1    MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYN-IMLSCILLNSDDVVA-- 57
            M  K  ++WNS++A +A Q G   +A E+F  + +   V YN + LS +LL      A  
Sbjct: 2185 MEEKDDISWNSMIAVYA-QSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALR 2243

Query: 58   AFDFFQRLPIKDTASWN-----TMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYI 112
            A        IK    +N     ++I  + +   +  A+  F  M EKN  SW+AM++GY 
Sbjct: 2244 AGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYG 2303

Query: 113  ECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNA 172
              G+  +A+++F                                      M+  G++PN 
Sbjct: 2304 MHGRAKEALDIF------------------------------------YKMVRAGVKPNY 2327

Query: 173  SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLE 232
             +  SVL  CSH   ++ G      +      K    + P I  Y               
Sbjct: 2328 ITFVSVLAACSHAGLVEEGWHWFNAM------KHKYDIEPGIEHY--------------- 2366

Query: 233  IQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 292
                       M+  + + G   +A  L  +MK   MKPD + + +LL AC     VDLG
Sbjct: 2367 ---------GCMVDLFGRAGCLNEAYNLIKRMK---MKPDFVVWGSLLGACRIHKNVDLG 2414

Query: 293  IQYFDSMVNDYGIAAKPD---HYTCMVDLLGRAGKL--VEAVDLIKKMPFKPQPAIFGTL 347
                  +         PD   +Y  + +L   AG+   VE + ++ K     +P  F  +
Sbjct: 2415 -----EIAAQKLFELDPDNCGYYVLLSNLYADAGRWADVERMRMLMKNRQLVKPPGFSLV 2469

Query: 348  LSACRVH 354
                RVH
Sbjct: 2470 ELKGRVH 2476


>gi|449438556|ref|XP_004137054.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
 gi|449479088|ref|XP_004155501.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
          Length = 855

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 233/590 (39%), Positives = 337/590 (57%), Gaps = 61/590 (10%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCI--LLNSDDVVAAFDFFQRLPI 67
           N++++ +AK   K+ +A ++F+ I + DVVS+N M++    + + D  ++ F   Q   I
Sbjct: 273 NALVSMYAKC-SKMNEANKVFEGIKKKDVVSWNAMVTGYSQIGSFDSALSLFKMMQEEDI 331

Query: 68  K-DTASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMISGYIECGQL----- 117
           K D  +W+ +I+G+ QK +  +A D+F  M     E N V+ ++++SG    G L     
Sbjct: 332 KLDVITWSAVIAGYAQKGHGFEALDVFRQMQLYGLEPNVVTLASLLSGCASVGALLYGKQ 391

Query: 118 ---------------DKAVEL---------------FKVAPV---------KSVVAWTAM 138
                          DK  +L               ++VA           K+VV WT M
Sbjct: 392 THAYVIKNILNLNWNDKEDDLLVLNGLIDMYAKCKSYRVARSIFDSIEGKDKNVVTWTVM 451

Query: 139 ISGYMKFGYVENSWAEDGLKLLRMMIG--LGIRPNASSLSSVLLGCSHLSSLQLGKQVHQ 196
           I GY + G      A D LKL   +      ++PNA +LS  L+ C+ L  L+LG+Q+H 
Sbjct: 452 IGGYAQHGE-----ANDALKLFAQIFKQKTSLKPNAFTLSCALMACARLGELRLGRQLHA 506

Query: 197 LVFKSPLCKDTTAL-TPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGE 255
              ++    +   +   LI MY K GD++ A  +F  ++ ++VV+W ++++GY  HG+GE
Sbjct: 507 YALRNENESEVLYVGNCLIDMYSKSGDIDAARAVFDNMKLRNVVSWTSLMTGYGMHGRGE 566

Query: 256 KALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCM 315
           +AL LFD+M+  G   D ITF+ +L AC+H+G+VD G+ YF  MV  +GI    +HY CM
Sbjct: 567 EALHLFDQMQKLGFAVDGITFLVVLYACSHSGMVDQGMIYFHDMVKGFGITPGAEHYACM 626

Query: 316 VDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANA 375
           VDLLGRAG+L EA++LIK M  +P   ++  LLSA R+H  ++L E+AA  L  L   N 
Sbjct: 627 VDLLGRAGRLNEAMELIKNMSMEPTAVVWVALLSASRIHANIELGEYAASKLTELGAEND 686

Query: 376 AGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPEL 435
            G Y  L+N+YA  ++W DVARIR  MK   + K PG SWI+       F  GDR HPE 
Sbjct: 687 -GSYTLLSNLYANARRWKDVARIRSLMKHTGIRKRPGCSWIQGKKSTTTFFVGDRSHPES 745

Query: 436 VSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTP 495
             I+  L +L KR+K  GYVP   FALH V +E K  LL  HSEKLA+A+G++    G P
Sbjct: 746 EQIYNLLLDLIKRIKDMGYVPQTSFALHDVDDEEKGDLLFEHSEKLAVAYGILTTAPGQP 805

Query: 496 IRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           IR+ KNLR+CGDCH A  YIS I   EI++RD++RFHHFK G+CSC  YW
Sbjct: 806 IRIHKNLRICGDCHSALTYISMIIDHEIVLRDSSRFHHFKKGSCSCRSYW 855



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 114/392 (29%), Positives = 194/392 (49%), Gaps = 36/392 (9%)

Query: 3   VKTTVNWNSVLAGF---AKQRGKLKDAQELFDKIP---QPDVVSY-NIMLSC---ILLNS 52
           ++  V+WNS+LA +    + R  L+ A  + +      +PD ++  NI+ +C     L  
Sbjct: 193 IEDIVSWNSILAAYVQGGQSRTALRIAFRMGNHYSLKLRPDAITLVNILPACASVFALQH 252

Query: 53  DDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYI 112
              V  F     L + D    N ++S + +   M +A  +F  + +K+ VSW+AM++GY 
Sbjct: 253 GKQVHGFSVRNGL-VDDVFVGNALVSMYAKCSKMNEANKVFEGIKKKDVVSWNAMVTGYS 311

Query: 113 ECGQLDKAVELFKVAPVK----SVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGI 168
           + G  D A+ LFK+   +     V+ W+A+I+GY + G+       + L + R M   G+
Sbjct: 312 QIGSFDSALSLFKMMQEEDIKLDVITWSAVIAGYAQKGH-----GFEALDVFRQMQLYGL 366

Query: 169 RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLC-------KDTTALTPLISMYCKCG 221
            PN  +L+S+L GC+ + +L  GKQ H  V K+ L         D   L  LI MY KC 
Sbjct: 367 EPNVVTLASLLSGCASVGALLYGKQTHAYVIKNILNLNWNDKEDDLLVLNGLIDMYAKCK 426

Query: 222 DLEDACKLFLEIQRKD--VVTWNAMISGYAQHGKGEKALRLFDKM--KDEGMKPDSITFV 277
               A  +F  I+ KD  VVTW  MI GYAQHG+   AL+LF ++  +   +KP++ T  
Sbjct: 427 SYRVARSIFDSIEGKDKNVVTWTVMIGGYAQHGEANDALKLFAQIFKQKTSLKPNAFTLS 486

Query: 278 ALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPF 337
             L+AC   G + LG Q     + +   +       C++D+  ++G +  A  +   M  
Sbjct: 487 CALMACARLGELRLGRQLHAYALRNENESEVLYVGNCLIDMYSKSGDIDAARAVFDNMKL 546

Query: 338 KPQPAIFGTLLSACRVHKRLDLAEFAAMNLFN 369
           +   + + +L++   +H R +     A++LF+
Sbjct: 547 RNVVS-WTSLMTGYGMHGRGE----EALHLFD 573



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 62/185 (33%), Positives = 109/185 (58%), Gaps = 17/185 (9%)

Query: 105 SAMISGYIECGQLDKAVELFKVA---PVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLR 161
           +++++ Y  CG LD A ++F       ++ +V+W ++++ Y++ G    +        LR
Sbjct: 166 NSIVAMYGRCGALDDAHQMFDEVLERKIEDIVSWNSILAAYVQGGQSRTA--------LR 217

Query: 162 MMIGLG------IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLIS 215
           +   +G      +RP+A +L ++L  C+ + +LQ GKQVH    ++ L  D      L+S
Sbjct: 218 IAFRMGNHYSLKLRPDAITLVNILPACASVFALQHGKQVHGFSVRNGLVDDVFVGNALVS 277

Query: 216 MYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSIT 275
           MY KC  + +A K+F  I++KDVV+WNAM++GY+Q G  + AL LF  M++E +K D IT
Sbjct: 278 MYAKCSKMNEANKVFEGIKKKDVVSWNAMVTGYSQIGSFDSALSLFKMMQEEDIKLDVIT 337

Query: 276 FVALL 280
           + A++
Sbjct: 338 WSAVI 342



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 63/188 (33%), Positives = 102/188 (54%), Gaps = 13/188 (6%)

Query: 104 WSAMISGYIECGQLDKAVELF-KVAPVKSVVAW-TAMISGYMKFGYVENSWAEDGLKLLR 161
           +S  +  YIECG   +AV L  ++ P  S V W  A+I   +K G ++     D L    
Sbjct: 62  FSYAVGAYIECGASAEAVSLLQRLIPSHSTVFWWNALIRRSVKLGLLD-----DTLGFYC 116

Query: 162 MMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCG 221
            M  LG  P+  +   VL  C  + SL+ G  VH +V  + L  +      +++MY +CG
Sbjct: 117 QMQRLGWLPDHYTFPFVLKACGEIPSLRHGASVHAIVCANGLGSNVFICNSIVAMYGRCG 176

Query: 222 DLEDACKLFLEI-QRK--DVVTWNAMISGYAQHGKGEKALRLFDKMKDE---GMKPDSIT 275
            L+DA ++F E+ +RK  D+V+WN++++ Y Q G+   ALR+  +M +     ++PD+IT
Sbjct: 177 ALDDAHQMFDEVLERKIEDIVSWNSILAAYVQGGQSRTALRIAFRMGNHYSLKLRPDAIT 236

Query: 276 FVALLLAC 283
            V +L AC
Sbjct: 237 LVNILPAC 244


>gi|15235472|ref|NP_195434.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75097747|sp|O23169.1|PP353_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g37170
 gi|2464864|emb|CAB16758.1| putative protein [Arabidopsis thaliana]
 gi|7270666|emb|CAB80383.1| putative protein [Arabidopsis thaliana]
 gi|332661361|gb|AEE86761.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 691

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 223/583 (38%), Positives = 329/583 (56%), Gaps = 48/583 (8%)

Query: 3   VKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFF 62
           V   V WN +L  +AK  G L DA+++FD++P  D+ S+N+M++        +  A   F
Sbjct: 117 VPGIVIWNRLLRMYAKC-GSLVDARKVFDEMPNRDLCSWNVMVNG-YAEVGLLEEARKLF 174

Query: 63  QRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP------------------------- 97
             +  KD+ SW  M++G+V+K    +A  L+  M                          
Sbjct: 175 DEMTEKDSYSWTAMVTGYVKKDQPEEALVLYSLMQRVPNSRPNIFTVSIAVAAAAAVKCI 234

Query: 98  ---------------EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGY 142
                          + + V WS+++  Y +CG +D+A  +F     K VV+WT+MI  Y
Sbjct: 235 RRGKEIHGHIVRAGLDSDEVLWSSLMDMYGKCGCIDEARNIFDKIVEKDVVSWTSMIDRY 294

Query: 143 MKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSP 202
            K     + W E G  L   ++G   RPN  + + VL  C+ L++ +LGKQVH  + +  
Sbjct: 295 FK----SSRWRE-GFSLFSELVGSCERPNEYTFAGVLNACADLTTEELGKQVHGYMTRVG 349

Query: 203 LCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFD 262
               + A + L+ MY KCG++E A  +     + D+V+W ++I G AQ+G+ ++AL+ FD
Sbjct: 350 FDPYSFASSSLVDMYTKCGNIESAKHVVDGCPKPDLVSWTSLIGGCAQNGQPDEALKYFD 409

Query: 263 KMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRA 322
            +   G KPD +TFV +L AC HAGLV+ G+++F S+   + ++   DHYTC+VDLL R+
Sbjct: 410 LLLKSGTKPDHVTFVNVLSACTHAGLVEKGLEFFYSITEKHRLSHTSDHYTCLVDLLARS 469

Query: 323 GKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQL 382
           G+  +   +I +MP KP   ++ ++L  C  +  +DLAE AA  LF + P N    YV +
Sbjct: 470 GRFEQLKSVISEMPMKPSKFLWASVLGGCSTYGNIDLAEEAAQELFKIEPENPV-TYVTM 528

Query: 383 ANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKL 442
           ANIYAA  KW++  ++R  M+E  V K PG SW E+    H F + D  HP    I E L
Sbjct: 529 ANIYAAAGKWEEEGKMRKRMQEIGVTKRPGSSWTEIKRKRHVFIAADTSHPMYNQIVEFL 588

Query: 443 KELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNL 502
           +EL K+MK  GYVP     LH V +E KE+ L++HSEKLA+AF ++    GT I+VFKNL
Sbjct: 589 RELRKKMKEEGYVPATSLVLHDVEDEQKEENLVYHSEKLAVAFAILSTEEGTAIKVFKNL 648

Query: 503 RVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           R C DCH A K+IS I KR+I VRD+TRFH F++G CSCGDYW
Sbjct: 649 RSCVDCHGAIKFISNITKRKITVRDSTRFHCFENGQCSCGDYW 691



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 46/128 (35%), Positives = 76/128 (59%), Gaps = 7/128 (5%)

Query: 156 GLKLLR---MMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTP 212
           G KLLR    ++G   +P AS+  +++  CS   +L+ GK+VH+ +  S           
Sbjct: 66  GQKLLREAVQLLGRAKKPPASTYCNLIQVCSQTRALEEGKKVHEHIRTSGFVPGIVIWNR 125

Query: 213 LISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPD 272
           L+ MY KCG L DA K+F E+  +D+ +WN M++GYA+ G  E+A +LFD+M ++    D
Sbjct: 126 LLRMYAKCGSLVDARKVFDEMPNRDLCSWNVMVNGYAEVGLLEEARKLFDEMTEK----D 181

Query: 273 SITFVALL 280
           S ++ A++
Sbjct: 182 SYSWTAMV 189


>gi|347954526|gb|AEP33763.1| organelle transcript processing 82, partial [Isatis tinctoria]
          Length = 671

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 225/568 (39%), Positives = 329/568 (57%), Gaps = 48/568 (8%)

Query: 19  QRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMIS 78
           Q  +L+DA ++FD+    DVVSY  +++    +  D+ +A   F  +P+KD  SWN MIS
Sbjct: 111 QNWRLEDAYKVFDRSSHRDVVSYTALITG-YASRGDIRSAQKLFDEIPVKDVVSWNAMIS 169

Query: 79  GFVQKKNMAKARDLFLAM------PEKNSV--------------------SW-------- 104
           G+ +     +A +LF  M      P++++                     SW        
Sbjct: 170 GYAETGCYKEALELFEEMMKMNVRPDESTYVTVLSACAHSGSIELGRQVHSWVDDHGFDS 229

Query: 105 -----SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKL 159
                +A+I  Y +CG+++ A  LF+    K V++W  +I GY      +     + L L
Sbjct: 230 NLKIVNALIDLYSKCGEVETACGLFQGLSYKDVISWNTLIGGYTHMNLYK-----EALLL 284

Query: 160 LRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK--SPLCKDTTALTPLISMY 217
            + M+  G  PN  ++ SVL  C+HL ++ +G+ +H  + K    +   ++  T LI MY
Sbjct: 285 FQEMLRSGETPNDVTMLSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMY 344

Query: 218 CKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFV 277
            KCGD+E A ++F  +  K + +WNAMI G+A HG+ + +  LF +M+  G++PD ITFV
Sbjct: 345 AKCGDIEAAHQVFNSMLHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIEPDDITFV 404

Query: 278 ALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPF 337
            LL AC+H+G++DLG   F SM  DY +  K +HY CM+DLLG +G   EA ++I  M  
Sbjct: 405 GLLSACSHSGMLDLGRHIFRSMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINTMEM 464

Query: 338 KPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVAR 397
           +P   I+ +LL AC++H  ++LAE  A NL  + P N +  Y+ L+NIYA+  +W+DVAR
Sbjct: 465 EPDGVIWCSLLKACKMHGNVELAESFAQNLIKIEPENPSS-YILLSNIYASAGRWEDVAR 523

Query: 398 IRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPD 457
           IR  +    + K+PG S IEV +VV EF  GD+ HP+   I+  L+E+E  ++ AG+VPD
Sbjct: 524 IRALLNGKCMKKVPGCSSIEVDSVVFEFVVGDKFHPQNREIYGMLEEMEVLLEEAGFVPD 583

Query: 458 LEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISA 517
               L  + EE KE  L  HSEKLAIAFGLI    GT + + KNLRVC +CH ATK +S 
Sbjct: 584 TSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLLSK 643

Query: 518 IEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           I KREI+ RD TRFHHF+DG CSC DYW
Sbjct: 644 IYKREIVARDRTRFHHFRDGVCSCNDYW 671



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 95/299 (31%), Positives = 157/299 (52%), Gaps = 15/299 (5%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVV 133
            ++IS +VQ   +  A  +F     ++ VS++A+I+GY   G +  A +LF   PVK VV
Sbjct: 103 TSLISMYVQNWRLEDAYKVFDRSSHRDVVSYTALITGYASRGDIRSAQKLFDEIPVKDVV 162

Query: 134 AWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ 193
           +W AMIS     GY E    ++ L+L   M+ + +RP+ S+  +VL  C+H  S++LG+Q
Sbjct: 163 SWNAMIS-----GYAETGCYKEALELFEEMMKMNVRPDESTYVTVLSACAHSGSIELGRQ 217

Query: 194 VHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGK 253
           VH  V       +   +  LI +Y KCG++E AC LF  +  KDV++WN +I GY     
Sbjct: 218 VHSWVDDHGFDSNLKIVNALIDLYSKCGEVETACGLFQGLSYKDVISWNTLIGGYTHMNL 277

Query: 254 GEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ---YFDSMVNDYGIAAKPD 310
            ++AL LF +M   G  P+ +T +++L AC H G +D+G     Y D  +   G+     
Sbjct: 278 YKEALLLFQEMLRSGETPNDVTMLSVLPACAHLGAIDIGRWIHVYIDKRLK--GVTNASS 335

Query: 311 HYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFN 369
             T ++D+  + G +  A  +   M  K   + +  ++    +H R D    A+ +LF+
Sbjct: 336 LRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSS-WNAMIFGFAMHGRAD----ASFDLFS 389



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 76/253 (30%), Positives = 119/253 (47%), Gaps = 37/253 (14%)

Query: 117 LDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLS 176
           L  A  +F+     + + W  MI G+       +S     L L   M+ LG+ PN+ +  
Sbjct: 14  LPYATSVFETIQEPNQLIWNTMIRGH-----ALSSDPVSSLTLYVCMVSLGLLPNSYTFP 68

Query: 177 SVLLGCSHLSSLQLGKQVHQLV-------------------------------FKSPLCK 205
            +L  C+   +   G+Q+H  V                               F     +
Sbjct: 69  FLLKSCAKSKTFTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDAYKVFDRSSHR 128

Query: 206 DTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMK 265
           D  + T LI+ Y   GD+  A KLF EI  KDVV+WNAMISGYA+ G  ++AL LF++M 
Sbjct: 129 DVVSYTALITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEALELFEEMM 188

Query: 266 DEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKL 325
              ++PD  T+V +L AC H+G ++LG Q   S V+D+G  +       ++DL  + G++
Sbjct: 189 KMNVRPDESTYVTVLSACAHSGSIELGRQ-VHSWVDDHGFDSNLKIVNALIDLYSKCGEV 247

Query: 326 VEAVDLIKKMPFK 338
             A  L + + +K
Sbjct: 248 ETACGLFQGLSYK 260


>gi|449439619|ref|XP_004137583.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Cucumis sativus]
 gi|449487109|ref|XP_004157499.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Cucumis sativus]
          Length = 642

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 208/492 (42%), Positives = 298/492 (60%), Gaps = 7/492 (1%)

Query: 55  VVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIEC 114
           +V A   F  +   +  +WN +++   + + +  A  +F  MP +N  SW+ M++GY + 
Sbjct: 157 LVFARKVFDEMIEPNIVAWNAIVAACFRCEGVKDAEQVFRCMPIRNLTSWNIMLAGYTKA 216

Query: 115 GQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASS 174
           G+L  A E+F   P+K  V+W+ MI      G+  N    D     R +   G+RPN  S
Sbjct: 217 GELQLAREVFMKMPLKDDVSWSTMI-----VGFAHNGNFNDAFAFFREVRREGMRPNEVS 271

Query: 175 LSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ 234
           L+ VL  C+   + + G+ +H  V KS   +  +    LI  Y KCG+L+ A  +F  + 
Sbjct: 272 LTGVLSACAQAGAFEFGRILHGFVEKSGFLQIISVNNALIDTYSKCGNLDMARLVFDNML 331

Query: 235 RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ 294
           R+  V+W AMI+G A HG GE+A+RLF++M++  +KPDSITF+++L AC+HAGLVDLG  
Sbjct: 332 RRSAVSWTAMIAGMAMHGYGEEAIRLFNEMEESNIKPDSITFISILYACSHAGLVDLGCS 391

Query: 295 YFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVH 354
           YF  MVN YGI    +HY CMVDL GRAGKL +A D + +MP  P   ++ TLL AC +H
Sbjct: 392 YFSRMVNTYGIEPVIEHYGCMVDLYGRAGKLQQAYDFVCQMPISPNDIVWRTLLGACSIH 451

Query: 355 KRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYS 414
             L LA      L  L+P N +G +V L+NIYA   KW DVA +R SM    + K PG+S
Sbjct: 452 GNLYLAGQVKRQLSELDPEN-SGDHVLLSNIYAVAGKWKDVAALRRSMTHQRLKKTPGWS 510

Query: 415 WIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKL-AGYVPDLEFALHAVGEEVKEQL 473
            IEV  +++ F +G++ +   V  H+KL+E+  R+++  GYVP++   LH +  E KE  
Sbjct: 511 MIEVNRIIYSFVAGEKQNDIAVEAHQKLREIMSRLRIEGGYVPEVGSVLHDIEVEEKEDS 570

Query: 474 LLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHH 533
           +  HSEKLA+AFG+ K+P G  IRV KNLR+C DCH   K IS + + EI+VRD +RFH 
Sbjct: 571 VSQHSEKLAVAFGMAKLPRGRAIRVVKNLRICRDCHTVMKLISKVYEVEIVVRDRSRFHS 630

Query: 534 FKDGTCSCGDYW 545
           F  G+CSC DYW
Sbjct: 631 FTHGSCSCRDYW 642



 Score = 55.1 bits (131), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 55/202 (27%), Positives = 95/202 (47%), Gaps = 17/202 (8%)

Query: 183 SHLSSLQLGKQVHQLVFKSPLCKDTTALTPLIS----MYCKCG---DLEDACKLFLEIQR 235
           S   SL+  KQ+  L+FK+  C ++    PL+S    ++C       L  A +LFL+I+ 
Sbjct: 13  SKCKSLRTVKQIQALIFKT--CLNSY---PLVSGKLLLHCAVTLPDSLHYARRLFLDIRN 67

Query: 236 KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMK-PDSITFVALLLACNHAGLVDLGIQ 294
            DV  +N +I G +       AL+LF +M+ + +  PDS +F  LL A  +   +  G+Q
Sbjct: 68  PDVFMYNTLIRGLSDSDTPSNALQLFVEMRRKSVALPDSFSFAFLLKAAANCRALTNGLQ 127

Query: 295 YFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVH 354
               +   YG+ +     T ++ +      LV A  +  +M  +P    +  +++AC   
Sbjct: 128 -LHCLAVGYGLDSHLFVGTTLISMYAECACLVFARKVFDEM-IEPNIVAWNAIVAACFRC 185

Query: 355 KRLDLAE--FAAMNLFNLNPAN 374
           + +  AE  F  M + NL   N
Sbjct: 186 EGVKDAEQVFRCMPIRNLTSWN 207



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 69/312 (22%), Positives = 112/312 (35%), Gaps = 99/312 (31%)

Query: 170 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 229
           P++ S + +L   ++  +L  G Q+H L     L       T LISMY +C  L  A K+
Sbjct: 104 PDSFSFAFLLKAAANCRALTNGLQLHCLAVGYGLDSHLFVGTTLISMYAECACLVFARKV 163

Query: 230 FLEIQRKDVVTWNA-------------------------------MISGYAQHGKGEKAL 258
           F E+   ++V WNA                               M++GY + G+ + A 
Sbjct: 164 FDEMIEPNIVAWNAIVAACFRCEGVKDAEQVFRCMPIRNLTSWNIMLAGYTKAGELQLAR 223

Query: 259 RLFDKM-------------------------------KDEGMKPDSITFVALLLACNHAG 287
            +F KM                               + EGM+P+ ++   +L AC  AG
Sbjct: 224 EVFMKMPLKDDVSWSTMIVGFAHNGNFNDAFAFFREVRREGMRPNEVSLTGVLSACAQAG 283

Query: 288 LVDLG---------------IQYFDSMVNDYGIAAKPD---------------HYTCMVD 317
             + G               I   +++++ Y      D                +T M+ 
Sbjct: 284 AFEFGRILHGFVEKSGFLQIISVNNALIDTYSKCGNLDMARLVFDNMLRRSAVSWTAMIA 343

Query: 318 LLGRAGKLVEAVDLIKKMP---FKPQPAIFGTLLSACRVHKRLDL--AEFAAM-NLFNLN 371
            +   G   EA+ L  +M     KP    F ++L AC     +DL  + F+ M N + + 
Sbjct: 344 GMAMHGYGEEAIRLFNEMEESNIKPDSITFISILYACSHAGLVDLGCSYFSRMVNTYGIE 403

Query: 372 PA-NAAGCYVQL 382
           P     GC V L
Sbjct: 404 PVIEHYGCMVDL 415


>gi|225447423|ref|XP_002276196.1| PREDICTED: pentatricopeptide repeat-containing protein At3g12770
           [Vitis vinifera]
 gi|296081235|emb|CBI17979.3| unnamed protein product [Vitis vinifera]
          Length = 742

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 223/542 (41%), Positives = 319/542 (58%), Gaps = 32/542 (5%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQ 63
           +  V+W S+++G+  Q G   +A  +F ++ Q +V    I L  +L    DV        
Sbjct: 233 RNIVSWTSMISGYG-QNGLPMEALRIFGQMRQRNVKPDWIALVSVLRAYTDV-------- 283

Query: 64  RLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVEL 123
                +       I G V K  +    DL +++        +AM   Y +CGQ+  A   
Sbjct: 284 -----EDLEQGKSIHGCVVKMGLEFEPDLLISL--------TAM---YAKCGQVMVARSF 327

Query: 124 FKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCS 183
           F    + +V+ W AMISGY K GY       + + L + MI   IR ++ ++ S +L C+
Sbjct: 328 FDQMEIPNVMMWNAMISGYAKNGYTN-----EAVGLFQEMISKNIRTDSITVRSAILACA 382

Query: 184 HLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNA 243
            + SL L K +   + K+    D    T LI M+ KCG ++ A ++F     KDVV W+A
Sbjct: 383 QVGSLDLAKWMGDYINKTEYRNDVFVNTALIDMFAKCGSVDLAREVFDRTLDKDVVVWSA 442

Query: 244 MISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDY 303
           MI GY  HG+G+ A+ LF  MK  G+ P+ +TFV LL ACNH+GLV+ G + F SM   Y
Sbjct: 443 MIVGYGLHGRGQDAIDLFYAMKQAGVCPNDVTFVGLLTACNHSGLVEEGWELFHSM-KYY 501

Query: 304 GIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFA 363
           GI A+  HY C+VDLLGR+G L EA D I  MP +P  +++G LL AC++++ + L E+A
Sbjct: 502 GIEARHQHYACVVDLLGRSGHLNEAYDFITTMPIEPGVSVWGALLGACKIYRHVTLGEYA 561

Query: 364 AMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVH 423
           A  LF+L+P N  G YVQL+N+YA+ + WD VA++R+ M+E  + K  GYS IE+   + 
Sbjct: 562 AEQLFSLDPFNT-GHYVQLSNLYASSRLWDSVAKVRILMREKGLSKDLGYSLIEINGKLQ 620

Query: 424 EFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAI 483
            FR GD+ HP    I E+L+ LE+R+K AG++P +E  LH + +E KE+ L  HSE+LAI
Sbjct: 621 AFRVGDKSHPRFKEIFEELESLERRLKEAGFIPHIESVLHDLNQEEKEETLCNHSERLAI 680

Query: 484 AFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGD 543
           A+GLI    GT +R+ KNLR C +CH ATK IS +  REI+VRD  RFHHFK+G CSC D
Sbjct: 681 AYGLISTAPGTTLRITKNLRACINCHSATKLISKLVNREIVVRDANRFHHFKNGVCSCRD 740

Query: 544 YW 545
           YW
Sbjct: 741 YW 742



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 78/305 (25%), Positives = 140/305 (45%), Gaps = 21/305 (6%)

Query: 60  DFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECG---- 115
           +F+  LP+    S     SGF      +   D  +     N +    ++SG +E G    
Sbjct: 48  NFYSSLPLPLDHSDYIPYSGFDFDSFFSSLLDHSVHKRHLNQIHAQLVVSGLVESGFLVT 107

Query: 116 ----------QLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIG 165
                     ++  A ++F   P  SV  W A+I GY    +       D +++   M  
Sbjct: 108 KFVNASWNIGEIGYARKVFDEFPEPSVFLWNAIIRGYSSHNFFG-----DAIEMYSRMQA 162

Query: 166 LGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLED 225
            G+ P+  +L  VL  CS +  L++GK+VH  +F+     D      L+++Y KCG +E 
Sbjct: 163 SGVNPDGFTLPCVLKACSGVPVLEVGKRVHGQIFRLGFESDVFVQNGLVALYAKCGRVEQ 222

Query: 226 ACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNH 285
           A  +F  +  +++V+W +MISGY Q+G   +ALR+F +M+   +KPD I  V++L A   
Sbjct: 223 ARIVFEGLDDRNIVSWTSMISGYGQNGLPMEALRIFGQMRQRNVKPDWIALVSVLRAYTD 282

Query: 286 AGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFG 345
              ++ G +     V   G+  +PD    +  +  + G+++ A     +M   P   ++ 
Sbjct: 283 VEDLEQG-KSIHGCVVKMGLEFEPDLLISLTAMYAKCGQVMVARSFFDQMEI-PNVMMWN 340

Query: 346 TLLSA 350
            ++S 
Sbjct: 341 AMISG 345



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 71/299 (23%), Positives = 131/299 (43%), Gaps = 49/299 (16%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNI-----MLSCILLNSDDV 55
           M +   + WN++++G+AK  G   +A  LF ++   ++ + +I     +L+C  + S D+
Sbjct: 331 MEIPNVMMWNAMISGYAKN-GYTNEAVGLFQEMISKNIRTDSITVRSAILACAQVGSLDL 389

Query: 56  VAAF-DFFQRLPIKDTASWNT-MISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE 113
                D+  +   ++    NT +I  F +  ++  AR++F    +K+ V WSAMI GY  
Sbjct: 390 AKWMGDYINKTEYRNDVFVNTALIDMFAKCGSVDLAREVFDRTLDKDVVVWSAMIVGYGL 449

Query: 114 CGQLDKAVELFKVAPVKSV----VAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIR 169
            G+   A++LF       V    V +  +++     G VE  W     +L   M   GI 
Sbjct: 450 HGRGQDAIDLFYAMKQAGVCPNDVTFVGLLTACNHSGLVEEGW-----ELFHSMKYYGIE 504

Query: 170 PNASSLSSV--LLGCS-HLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 226
                 + V  LLG S HL+      + +  +   P       + P +S++   G L  A
Sbjct: 505 ARHQHYACVVDLLGRSGHLN------EAYDFITTMP-------IEPGVSVW---GALLGA 548

Query: 227 CKLFL-----EIQRKDVVTWNAMISG-YAQHGKGEKALRLFDK-------MKDEGMKPD 272
           CK++      E   + + + +   +G Y Q      + RL+D        M+++G+  D
Sbjct: 549 CKIYRHVTLGEYAAEQLFSLDPFNTGHYVQLSNLYASSRLWDSVAKVRILMREKGLSKD 607


>gi|449510623|ref|XP_004163716.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g27610-like [Cucumis sativus]
          Length = 878

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 220/569 (38%), Positives = 321/569 (56%), Gaps = 53/569 (9%)

Query: 16  FAKQR--GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRL-PIKDTAS 72
           F KQ   G +K+  E    I    +V+Y+            V  AF  F       +  +
Sbjct: 324 FTKQLHCGVVKNGYEFAQDIRTALMVTYS--------KCSSVDEAFKLFSMADAAHNVVT 375

Query: 73  WNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISG------------------ 110
           W  MI GFVQ  N  KA DLF  M  +    N  ++S +++G                  
Sbjct: 376 WTAMIGGFVQNNNNKKAVDLFCQMSREGVRPNHFTYSTVLAGKPSSLLSQLHAQIIKAYY 435

Query: 111 -------------YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGL 157
                        Y++ G + ++  +F   P K +VAW+AM++G       +   +E  +
Sbjct: 436 EKVPSVATALLDAYVKTGNVVESARVFYSIPAKDIVAWSAMLTGL-----AQTRDSEKAM 490

Query: 158 KLLRMMIGLGIRPNASSLSSVLLGCSH-LSSLQLGKQVHQLVFKSPLCKDTTALTPLISM 216
           ++   ++  G++PN  + SSV+  CS   ++++ GKQ+H    KS         + L++M
Sbjct: 491 EVFIQLVKEGVKPNEYTFSSVINACSSSAATVEHGKQIHATAVKSGKSNALCVSSALLTM 550

Query: 217 YCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITF 276
           Y K G++E A K+F   + +D+V+WN+MI+GY QHG  +KAL +F  M+++G+  D +TF
Sbjct: 551 YSKKGNIESAEKVFTRQEERDIVSWNSMITGYGQHGDAKKALEVFQIMQNQGLPLDDVTF 610

Query: 277 VALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 336
           + +L AC HAGLV+ G +YF+ M+ DY I  K +HY+CMVDL  RAG   +A+D+I  MP
Sbjct: 611 IGVLTACTHAGLVEEGEKYFNIMIKDYHIDKKXEHYSCMVDLYSRAGMFDKAMDIINGMP 670

Query: 337 FKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVA 396
           F   P I+ TLL+ACRVH+ L+L + AA  L +L P +A G YV L+NI+A    W++ A
Sbjct: 671 FPASPTIWRTLLAACRVHRNLELGKLAAEKLVSLQPNDAVG-YVLLSNIHAVAGNWEEKA 729

Query: 397 RIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVP 456
            +R  M E  V K  G SWIE+   +  F +GD  HP    ++ KL+EL  ++K  GY P
Sbjct: 730 HVRKLMDERKVKKEAGCSWIEIKNRIFSFLAGDVSHPFSDLVYAKLEELSIKLKDMGYQP 789

Query: 457 DLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYIS 516
           D  +  H V EE KE +L  HSE+LAIA+GLI +P G PI++ KNLR+CGDCH   + IS
Sbjct: 790 DTNYVFHDVEEEHKEAILSQHSERLAIAYGLIALPPGAPIQIEKNLRICGDCHNVIELIS 849

Query: 517 AIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
            IE+R +IVRD+ RFHHFK G CSCG YW
Sbjct: 850 LIEERTLIVRDSNRFHHFKGGVCSCGGYW 878



 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 81/324 (25%), Positives = 144/324 (44%), Gaps = 18/324 (5%)

Query: 23  LKDAQELFDKIPQPDVVSYNIMLSCILLN--SDDVVAAFDFFQRLPIKDTASWNTMISGF 80
            +D + +FD++   +VVS+  +LS    N  +D+V+   +  Q   +         + G 
Sbjct: 155 FEDGRGIFDEMGIKNVVSWTSLLSGYARNGLNDEVIHLINQMQMEGVNPNGFTFATVLGA 214

Query: 81  VQKKNMAKARDLFLAMPEKNSVSWS-----AMISGYIECGQLDKAVELFKVAPVKSVVAW 135
           +  +++ +      AM  KN   ++     A+I  Y++   +  A  +F    V+  V W
Sbjct: 215 LADESIIEGGVQVHAMIVKNGFEFTTFVCNALICMYLKSEMVGDAEAVFDSMVVRDSVTW 274

Query: 136 TAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVH 195
             MI GY   G+       +G ++   M   G++ + +   + L  CS    L   KQ+H
Sbjct: 275 NIMIGGYAAIGFYL-----EGFQMFHRMRLAGVKLSRTVFCTALKLCSQQRELNFTKQLH 329

Query: 196 QLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF-LEIQRKDVVTWNAMISGYAQHGKG 254
             V K+         T L+  Y KC  +++A KLF +     +VVTW AMI G+ Q+   
Sbjct: 330 CGVVKNGYEFAQDIRTALMVTYSKCSSVDEAFKLFSMADAAHNVVTWTAMIGGFVQNNNN 389

Query: 255 EKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTC 314
           +KA+ LF +M  EG++P+  T+  +L     + L  L  Q   +          P   T 
Sbjct: 390 KKAVDLFCQMSREGVRPNHFTYSTVLAGKPSSLLSQLHAQIIKAYYEKV-----PSVATA 444

Query: 315 MVDLLGRAGKLVEAVDLIKKMPFK 338
           ++D   + G +VE+  +   +P K
Sbjct: 445 LLDAYVKTGNVVESARVFYSIPAK 468



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 93/175 (53%), Gaps = 5/175 (2%)

Query: 120 AVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVL 179
           A +LF   P+K +  +  ++     F +  N+   + L L + +   G+  +  +LS  L
Sbjct: 57  AHQLFDETPLKDISHYNRLL-----FDFSRNNHDREALHLFKDLHSSGLGVDGLTLSCAL 111

Query: 180 LGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVV 239
             C  L    +G+QVH    KS   +D +  T L+ MY K  D ED   +F E+  K+VV
Sbjct: 112 KVCGVLFDQVVGRQVHCQSLKSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVV 171

Query: 240 TWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ 294
           +W +++SGYA++G  ++ + L ++M+ EG+ P+  TF  +L A     +++ G+Q
Sbjct: 172 SWTSLLSGYARNGLNDEVIHLINQMQMEGVNPNGFTFATVLGALADESIIEGGVQ 226



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 89/368 (24%), Positives = 160/368 (43%), Gaps = 79/368 (21%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCIL--LNSDDVVAA 58
           M +K  V+W S+L+G+A+  G   +   L +++    V       + +L  L  + ++  
Sbjct: 165 MGIKNVVSWTSLLSGYARN-GLNDEVIHLINQMQMEGVNPNGFTFATVLGALADESIIEG 223

Query: 59  FDFFQRLPIKD-----TASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE 113
                 + +K+     T   N +I  +++ + +  A  +F +M  ++SV+W+ MI GY  
Sbjct: 224 GVQVHAMIVKNGFEFTTFVCNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAA 283

Query: 114 CGQLDKAVELF---KVAPVK--SVVAWTAM----------ISGYMKFGYVENSW------ 152
            G   +  ++F   ++A VK    V  TA+           +  +  G V+N +      
Sbjct: 284 IGFYLEGFQMFHRMRLAGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDI 343

Query: 153 -------------AEDGLKLLRM------------MIG--------------------LG 167
                         ++  KL  M            MIG                     G
Sbjct: 344 RTALMVTYSKCSSVDEAFKLFSMADAAHNVVTWTAMIGGFVQNNNNKKAVDLFCQMSREG 403

Query: 168 IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC 227
           +RPN  + S+VL G        L  Q+H  + K+   K  +  T L+  Y K G++ ++ 
Sbjct: 404 VRPNHFTYSTVLAG----KPSSLLSQLHAQIIKAYYEKVPSVATALLDAYVKTGNVVESA 459

Query: 228 KLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC-NHA 286
           ++F  I  KD+V W+AM++G AQ    EKA+ +F ++  EG+KP+  TF +++ AC + A
Sbjct: 460 RVFYSIPAKDIVAWSAMLTGLAQTRDSEKAMEVFIQLVKEGVKPNEYTFSSVINACSSSA 519

Query: 287 GLVDLGIQ 294
             V+ G Q
Sbjct: 520 ATVEHGKQ 527


>gi|224096249|ref|XP_002310592.1| predicted protein [Populus trichocarpa]
 gi|222853495|gb|EEE91042.1| predicted protein [Populus trichocarpa]
          Length = 747

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 225/553 (40%), Positives = 323/553 (58%), Gaps = 18/553 (3%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQ-----PDVVSYNIMLS-CILLNSDDVVA 57
           +  V+WNS++AG   Q G   +A + F  I +     PD  S    LS C  L       
Sbjct: 202 RDIVSWNSMIAG-CNQHGFDNEALQFFSSILKDTSLKPDRFSLASALSACANLEKLSFGK 260

Query: 58  AFDFFQRLPIKDT--ASWNTMISGFVQKKNMAKARDLF--LAMPEKNSVSWSAMISGYIE 113
               +    + D   A  N +IS + +   +  AR +     + + + ++++A+++GY++
Sbjct: 261 QIHGYIVRTMFDASGAVGNALISMYAKSGGVEIARRIIEQSGISDLDVIAFTALLNGYVK 320

Query: 114 CGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNAS 173
            G +  A ++F       VVAWTAMI      GYV+N    D +++ + M+  G RPN+ 
Sbjct: 321 LGDITPARQIFNSLKDPDVVAWTAMI-----VGYVQNGLNNDAIEVFKTMVSEGPRPNSF 375

Query: 174 SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF-LE 232
           +L+++L   S ++SL  GKQ+H    +S      +    L +MY K G +  A K+F L 
Sbjct: 376 TLAAMLSASSSVTSLNHGKQIHASAIRSGEALSPSVGNALTTMYAKAGSINGARKVFNLL 435

Query: 233 IQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 292
            Q +D V+W +MI   AQHG GE+A+ LF++M   G+KPD IT+V +L AC H GLV+ G
Sbjct: 436 RQNRDTVSWTSMIMALAQHGLGEEAIELFEQMLTLGIKPDHITYVGVLSACTHGGLVEQG 495

Query: 293 IQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACR 352
             YFD M N + I     HY CMVDL GRAG L EA   ++ MP +P    +G+LLS+C+
Sbjct: 496 RSYFDLMKNVHKIDPTLSHYACMVDLFGRAGLLQEAYKFVENMPMEPDVIAWGSLLSSCK 555

Query: 353 VHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPG 412
           V+K +DLA+ AA  L  + P N+ G Y  LAN+Y++  KWDD A+IR  MK   V K  G
Sbjct: 556 VYKNVDLAKVAAERLLLIEPNNS-GAYSALANVYSSCGKWDDAAKIRKLMKARGVKKEQG 614

Query: 413 YSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQ 472
            SW+++    H F   D +HP+   I++ + ++ K +K  G+ PD E  LH +  EVK+Q
Sbjct: 615 LSWVQIQNKTHVFGVEDGLHPQKDEIYKMMDKIWKEIKKMGFAPDTESVLHDLEVEVKDQ 674

Query: 473 LLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFH 532
           +L +HSEKLAIAFG+I  P  T +R+ KNLRVC DCH A K+IS +  REIIVRD TRFH
Sbjct: 675 ILRYHSEKLAIAFGIISTPENTTLRIMKNLRVCNDCHNAIKFISKLVDREIIVRDATRFH 734

Query: 533 HFKDGTCSCGDYW 545
           HFKDG+CSC DYW
Sbjct: 735 HFKDGSCSCKDYW 747



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 71/256 (27%), Positives = 126/256 (49%), Gaps = 42/256 (16%)

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQL 117
           A D F  +P+K T SWNT++SG+ ++  + KA  +F  +P ++SVSW+ +I GY + G+ 
Sbjct: 29  AHDLFNEMPVKTTFSWNTILSGYAKQGKLEKAHQVFDLIPVRDSVSWTTIIVGYNQMGRF 88

Query: 118 DKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSS 177
                                               ED +K+   M+   + P   +L++
Sbjct: 89  ------------------------------------EDAIKIFVDMVKDKVLPTQFTLTN 112

Query: 178 VLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKD 237
           VL  C+   S  +GK+VH  V K  L         L++MY K GDL+ A  +F  ++ ++
Sbjct: 113 VLASCAATGSRGIGKKVHSFVVKLGLHACVPVANSLLNMYAKTGDLKMAKVVFDRMKLRN 172

Query: 238 VVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFD 297
             +WNAMIS +   G+ + AL  F+ + +     D +++ +++  CN  G  +  +Q+F 
Sbjct: 173 TSSWNAMISLHMNCGRVDLALAQFELLSER----DIVSWNSMIAGCNQHGFDNEALQFFS 228

Query: 298 SMVNDYGIAAKPDHYT 313
           S++ D  +  KPD ++
Sbjct: 229 SILKDTSL--KPDRFS 242



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 106/427 (24%), Positives = 171/427 (40%), Gaps = 139/427 (32%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPD-------VVSY------------ 41
           M VKTT +WN++L+G+AKQ GKL+ A ++FD IP  D       +V Y            
Sbjct: 36  MPVKTTFSWNTILSGYAKQ-GKLEKAHQVFDLIPVRDSVSWTTIIVGYNQMGRFEDAIKI 94

Query: 42  -----------------NIMLSCI-----------------------------LLN---- 51
                            N++ SC                              LLN    
Sbjct: 95  FVDMVKDKVLPTQFTLTNVLASCAATGSRGIGKKVHSFVVKLGLHACVPVANSLLNMYAK 154

Query: 52  SDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGY 111
           + D+  A   F R+ +++T+SWN MIS  +    +  A   F  + E++ VSW++MI+G 
Sbjct: 155 TGDLKMAKVVFDRMKLRNTSSWNAMISLHMNCGRVDLALAQFELLSERDIVSWNSMIAGC 214

Query: 112 IECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPN 171
            + G  ++A++ F      S++  T++                              +P+
Sbjct: 215 NQHGFDNEALQFF-----SSILKDTSL------------------------------KPD 239

Query: 172 ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCK-------------------------- 205
             SL+S L  C++L  L  GKQ+H  + ++                              
Sbjct: 240 RFSLASALSACANLEKLSFGKQIHGYIVRTMFDASGAVGNALISMYAKSGGVEIARRIIE 299

Query: 206 -------DTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKAL 258
                  D  A T L++ Y K GD+  A ++F  ++  DVV W AMI GY Q+G    A+
Sbjct: 300 QSGISDLDVIAFTALLNGYVKLGDITPARQIFNSLKDPDVVAWTAMIVGYVQNGLNNDAI 359

Query: 259 RLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDL 318
            +F  M  EG +P+S T  A+L A +    ++ G Q   S +   G A  P     +  +
Sbjct: 360 EVFKTMVSEGPRPNSFTLAAMLSASSSVTSLNHGKQIHASAIRS-GEALSPSVGNALTTM 418

Query: 319 LGRAGKL 325
             +AG +
Sbjct: 419 YAKAGSI 425



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 52/93 (55%), Gaps = 4/93 (4%)

Query: 210 LTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGM 269
           +  L+++Y K G   DA  LF E+  K   +WN ++SGYA+ GK EKA ++FD +     
Sbjct: 13  MNNLMNLYAKTGFHLDAHDLFNEMPVKTTFSWNTILSGYAKQGKLEKAHQVFDLIPVR-- 70

Query: 270 KPDSITFVALLLACNHAGLVDLGIQYFDSMVND 302
             DS+++  +++  N  G  +  I+ F  MV D
Sbjct: 71  --DSVSWTTIIVGYNQMGRFEDAIKIFVDMVKD 101


>gi|225438894|ref|XP_002279137.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Vitis vinifera]
          Length = 628

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 228/547 (41%), Positives = 313/547 (57%), Gaps = 24/547 (4%)

Query: 9   WNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCIL----------LNSDDVVAA 58
           W +++ G A  RG  + A   + ++    V       S IL          L+S  V   
Sbjct: 96  WTAIIHGHA-LRGLHEQALNFYAQMLTQGVEPNAFTFSSILKLCPIEPGKALHSQAVKLG 154

Query: 59  FDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLD 118
           FD        D      ++  + +  ++  A+ LF  MPEK+ VS +AM++ Y + G+LD
Sbjct: 155 FD-------SDLYVRTGLLDVYARGGDVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELD 207

Query: 119 KAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSV 178
            A  LF     +  V W  MI GY      +N    + L L R M+    +PN  ++ SV
Sbjct: 208 AARVLFDGMEERDGVCWNVMIDGY-----TQNGMPNEALVLFRRMLKAKAKPNEVTVLSV 262

Query: 179 LLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDV 238
           L  C  L +L+ G+ VH  +  + +  +    T L+ MY KCG LEDA  +F +I  KDV
Sbjct: 263 LSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDV 322

Query: 239 VTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDS 298
           V WN+MI GYA HG  ++AL+LF  M   G+ P +ITF+ +L AC H+G V  G   F+ 
Sbjct: 323 VAWNSMIVGYAMHGFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNK 382

Query: 299 MVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLD 358
           M ++YGI  K +HY CMV+LLGRAG + +A +L+K M  +P P ++GTLL ACR+H ++ 
Sbjct: 383 MKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGKIA 442

Query: 359 LAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEV 418
           L E     L + N AN +G Y+ L+NIYAA+  WD VAR+R  MK++ V K PG S IEV
Sbjct: 443 LGEKIVELLVDQNLAN-SGTYILLSNIYAAVGNWDGVARLRTMMKDSGVKKEPGCSSIEV 501

Query: 419 GTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHS 478
              VHEF +G   HP+   I+  L+E+   +K  GY P  +  LH +GE  KE+ L  HS
Sbjct: 502 NNKVHEFLAGGLNHPKRKEIYMMLEEINGWLKSHGYTPQTDIVLHDIGETEKERSLEVHS 561

Query: 479 EKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGT 538
           EKLAIAFGLI    GT I++ KNLRVC DCH  TK IS I  R+I+VRD  RFHHF +G+
Sbjct: 562 EKLAIAFGLINTQPGTTIKIVKNLRVCADCHEVTKLISKITGRKIVVRDRNRFHHFVNGS 621

Query: 539 CSCGDYW 545
           CSCGDYW
Sbjct: 622 CSCGDYW 628



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 81/297 (27%), Positives = 132/297 (44%), Gaps = 44/297 (14%)

Query: 111 YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRP 170
           Y   G+LD +V LF      SV  WTA+I G+   G       E  L     M+  G+ P
Sbjct: 72  YASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGL-----HEQALNFYAQMLTQGVEP 126

Query: 171 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 230
           NA + SS+L  C     ++ GK +H    K     D    T L+ +Y + GD+  A +LF
Sbjct: 127 NAFTFSSILKLCP----IEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLF 182

Query: 231 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE---------------GM------ 269
             +  K +V+  AM++ YA+HG+ + A  LFD M++                GM      
Sbjct: 183 DTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALV 242

Query: 270 ----------KPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLL 319
                     KP+ +T +++L AC   G ++ G ++  S + + GI       T +VD+ 
Sbjct: 243 LFRRMLKAKAKPNEVTVLSVLSACGQLGALESG-RWVHSYIENNGIQFNVHVGTALVDMY 301

Query: 320 GRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVH--KRLDLAEFAAMNLFNLNPAN 374
            + G L +A  +  K+  K   A + +++    +H   +  L  F +M    L+P N
Sbjct: 302 SKCGSLEDARLVFDKIDDKDVVA-WNSMIVGYAMHGFSQEALQLFKSMCRMGLHPTN 357



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 78/324 (24%), Positives = 141/324 (43%), Gaps = 29/324 (8%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  K+ V+  ++L  +AK  G+L  A+ LFD + + D V +N+M+     N     A   
Sbjct: 185 MPEKSLVSLTAMLTCYAKH-GELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVL 243

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMA--KARDLFLAMPEKNSVSW-----SAMISGYIE 113
           F + L  K   +  T++S       +   ++     +  E N + +     +A++  Y +
Sbjct: 244 FRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSK 303

Query: 114 CGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNAS 173
           CG L+ A  +F     K VVAW +MI GY   G+     +++ L+L + M  +G+ P   
Sbjct: 304 CGSLEDARLVFDKIDDKDVVAWNSMIVGYAMHGF-----SQEALQLFKSMCRMGLHPTNI 358

Query: 174 SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMY-C------KCGDLEDA 226
           +   +L  C H   +  G  +   +      KD   + P I  Y C      + G +E A
Sbjct: 359 TFIGILSACGHSGWVTEGWDIFNKM------KDEYGIEPKIEHYGCMVNLLGRAGHVEQA 412

Query: 227 CKLFLEIQ-RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNH 285
            +L   +    D V W  ++     HGK     ++ + + D+ +  +S T++ L      
Sbjct: 413 YELVKNMNIEPDPVLWGTLLGACRLHGKIALGEKIVELLVDQNL-ANSGTYILLSNIYAA 471

Query: 286 AGLVDLGIQYFDSMVNDYGIAAKP 309
            G  D G+    +M+ D G+  +P
Sbjct: 472 VGNWD-GVARLRTMMKDSGVKKEP 494



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 78/177 (44%), Gaps = 24/177 (13%)

Query: 193 QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHG 252
           Q+H ++F+  L         L   Y   G L+ +  LF   Q   V  W A+I G+A  G
Sbjct: 48  QIHAVLFRHGLDHHPILNFKLQRSYASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRG 107

Query: 253 KGEKALRLFDKMKDEGMKPDSITFVALLLACN-------HAGLVDLGIQYFDSMVNDYGI 305
             E+AL  + +M  +G++P++ TF ++L  C        H+  V LG   FDS       
Sbjct: 108 LHEQALNFYAQMLTQGVEPNAFTFSSILKLCPIEPGKALHSQAVKLG---FDS------- 157

Query: 306 AAKPDHY--TCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLA 360
               D Y  T ++D+  R G +V A  L   MP K   ++   L    + H  LD A
Sbjct: 158 ----DLYVRTGLLDVYARGGDVVSAQQLFDTMPEKSLVSLTAMLTCYAK-HGELDAA 209


>gi|359482115|ref|XP_003632713.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 989

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 218/544 (40%), Positives = 320/544 (58%), Gaps = 17/544 (3%)

Query: 11  SVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK-- 68
           SVL     + G+L  A+ +  ++ + DVVS+  M++      D    A   FQ +  +  
Sbjct: 454 SVLIDMYAKHGELDTARGILQRLREEDVVSWTAMIAG-YTQHDLFAEALKLFQEMENQGI 512

Query: 69  --DTASWNTMISGF--VQKKNMAK---ARDLFLAMPEKNSVSWSAMISGYIECGQLDKAV 121
             D   +++ IS    +Q  N  +   A+       E  S+  +A++S Y  CG+   A 
Sbjct: 513 RSDNIGFSSAISACAGIQALNQGQQIHAQSYISGYSEDLSIG-NALVSLYARCGRAQDAY 571

Query: 122 ELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLG 181
             F+    K  ++W A+ISG+ + G+      E+ L++   M   G+  N  +  S +  
Sbjct: 572 LAFEKIDAKDNISWNALISGFAQSGH-----CEEALQVFSQMNQAGVEANLFTFGSAVSA 626

Query: 182 CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTW 241
            ++ ++++ GKQ+H ++ K+    +T A   LI++Y KCG +EDA + F E+  K+VV+W
Sbjct: 627 TANTANIKQGKQIHAMMIKTGYDSETEASNVLITLYSKCGSIEDAKREFFEMPEKNVVSW 686

Query: 242 NAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN 301
           NAMI+GY+QHG G +A+ LF++MK  G+ P+ +TFV +L AC+H GLV+ G+ YF SM  
Sbjct: 687 NAMITGYSQHGYGSEAVSLFEEMKQLGLMPNHVTFVGVLSACSHVGLVNEGLSYFRSMSK 746

Query: 302 DYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAE 361
           ++G+  KP+HY C+VDLLGRA  L  A + I++MP +P   I+ TLLSAC VHK +++ E
Sbjct: 747 EHGLVPKPEHYVCVVDLLGRAALLCCAREFIEEMPIEPDAMIWRTLLSACTVHKNIEIGE 806

Query: 362 FAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTV 421
           FAA +L  L P ++A  YV L+N+YA   KWD   R R  MK+  V K PG SWIEV   
Sbjct: 807 FAARHLLELEPEDSA-TYVLLSNMYAVSGKWDYRDRTRQMMKDRGVKKEPGRSWIEVKNS 865

Query: 422 VHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKL 481
           +H F  GDR+HP    I+E + +L +R    GYV D    L+ V +E K+     HSEKL
Sbjct: 866 IHAFFVGDRLHPLAEQIYEYIDDLNERAGEIGYVQDRYNLLNDVEQEQKDPTAYIHSEKL 925

Query: 482 AIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSC 541
           A+AFGL+ +    PIRV KNLRVC DCH   K++S I  R I+VRD  RFHHF+ G CSC
Sbjct: 926 AVAFGLLSLTNTMPIRVIKNLRVCNDCHNWIKFVSKISNRAIVVRDAYRFHHFEGGVCSC 985

Query: 542 GDYW 545
            DYW
Sbjct: 986 KDYW 989



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 125/473 (26%), Positives = 205/473 (43%), Gaps = 70/473 (14%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLN--SDDVVAAFDFFQRLPIK-DTASWNTMI 77
           G L  A+++F K+ + D +SYN ++S +     SD  +  F+  Q   +K D  +  +++
Sbjct: 262 GNLIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRALQLFEKMQLDCMKPDCVTVASLL 321

Query: 78  SGFVQKKNMAKARDLFLAMPEKNSVSWSAMISG-----YIECGQLDKAVELFKVAPVKSV 132
           S         K + L  +   K  +S   +I G     Y++C  ++ A E F     ++V
Sbjct: 322 SACASVGAGYKGKQLH-SYVIKMGMSSDLIIEGSLLDLYVKCFDIETAHEYFLTTETENV 380

Query: 133 VAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGK 192
           V W  M+  Y + G +  S+       L+M I  G+ PN  +  S+L  C+ L +L LG+
Sbjct: 381 VLWNVMLVAYGQLGNLSESY----WIFLQMQIE-GLMPNQYTYPSILRTCTSLGALDLGE 435

Query: 193 QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHG 252
           Q+H  V KS    +    + LI MY K G+L+ A  +   ++ +DVV+W AMI+GY QH 
Sbjct: 436 QIHTQVIKSGFQFNVYVCSVLIDMYAKHGELDTARGILQRLREEDVVSWTAMIAGYTQHD 495

Query: 253 KGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ-----YFDSMVNDYGIAA 307
              +AL+LF +M+++G++ D+I F + + AC     ++ G Q     Y      D  I  
Sbjct: 496 LFAEALKLFQEMENQGIRSDNIGFSSAISACAGIQALNQGQQIHAQSYISGYSEDLSIG- 554

Query: 308 KPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQP---------AIFGTLLSACRVHKRLD 358
                  +V L  R G+  +A    +K+  K            A  G    A +V  +++
Sbjct: 555 -----NALVSLYARCGRAQDAYLAFEKIDAKDNISWNALISGFAQSGHCEEALQVFSQMN 609

Query: 359 LAEFAAMNLFNLNPANAAGCYVQ--------------------------LANIYAAMKKW 392
            A   A NLF    A +A                               L  +Y+     
Sbjct: 610 QAGVEA-NLFTFGSAVSATANTANIKQGKQIHAMMIKTGYDSETEASNVLITLYSKCGSI 668

Query: 393 DDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKEL 445
           +D  R    M E NVV     SW  + T   +   G     E VS+ E++K+L
Sbjct: 669 EDAKREFFEMPEKNVV-----SWNAMITGYSQHGYG----SEAVSLFEEMKQL 712



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 117/475 (24%), Positives = 208/475 (43%), Gaps = 87/475 (18%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIM---LSCILLNSDDVVAAFDFFQRLPIKDTASWNTMI 77
           G L DA++L  +I +      +++   L  I L   +V  A   F  +P  + + WN +I
Sbjct: 24  GSLLDAKKLHARIFKSGFDGEDVLGSRLIDIYLAHGEVDNAIKLFDDIPSSNVSFWNKVI 83

Query: 78  SGFVQKKNMAKARDLFLAM------PEKNSVS---------------------------- 103
           SG + KK  ++   LF  M      P++++ +                            
Sbjct: 84  SGLLAKKLASQVLGLFSLMITENVTPDESTFASVLRACSGGKAPFQVTEQIHAKIIHHGF 143

Query: 104 ------WSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGL 157
                  + +I  Y + G +D A  +F+   +K  V+W AMISG       +N   ++ +
Sbjct: 144 GSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDSVSWVAMISGLS-----QNGREDEAI 198

Query: 158 KLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMY 217
            L   M    + P     SSVL  C+ +   +LG+Q+H  + K  L  +T     L+++Y
Sbjct: 199 LLFCQMHKSAVIPTPYVFSSVLSACTKIELFKLGEQLHGFIVKWGLSSETFVCNALVTLY 258

Query: 218 CKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFV 277
            + G+L  A ++F ++ R+D +++N++ISG AQ G  ++AL+LF+KM+ + MKPD +T  
Sbjct: 259 SRWGNLIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRALQLFEKMQLDCMKPDCVTVA 318

Query: 278 ALLLACNHAG--------------------------LVDLGIQYFD-SMVNDYGIAAKPD 310
           +LL AC   G                          L+DL ++ FD    ++Y +  + +
Sbjct: 319 SLLSACASVGAGYKGKQLHSYVIKMGMSSDLIIEGSLLDLYVKCFDIETAHEYFLTTETE 378

Query: 311 H---YTCMVDLLGRAGKLVEAVDLIKKMPFK---PQPAIFGTLLSACRVHKRLDLAEFAA 364
           +   +  M+   G+ G L E+  +  +M  +   P    + ++L  C     LDL E   
Sbjct: 379 NVVLWNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLGALDLGEQIH 438

Query: 365 MNLFNLN-PANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVK----MPGYS 414
             +       N   C V L ++YA   + D    I   ++E +VV     + GY+
Sbjct: 439 TQVIKSGFQFNVYVCSV-LIDMYAKHGELDTARGILQRLREEDVVSWTAMIAGYT 492



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 77/343 (22%), Positives = 165/343 (48%), Gaps = 51/343 (14%)

Query: 3   VKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFF 62
           +K +V+W ++++G + Q G+  +A  LF ++ +  V+    + S +L ++   +  F   
Sbjct: 175 LKDSVSWVAMISGLS-QNGREDEAILLFCQMHKSAVIPTPYVFSSVL-SACTKIELFKLG 232

Query: 63  QRLP--------IKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIEC 114
           ++L           +T   N +++ + +  N+  A  +F  M  ++ +S++++ISG  + 
Sbjct: 233 EQLHGFIVKWGLSSETFVCNALVTLYSRWGNLIAAEQIFSKMHRRDRISYNSLISGLAQR 292

Query: 115 GQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASS 174
           G  D+A++LF+                                   +M +   ++P+  +
Sbjct: 293 GFSDRALQLFE-----------------------------------KMQLDC-MKPDCVT 316

Query: 175 LSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ 234
           ++S+L  C+ + +   GKQ+H  V K  +  D      L+ +Y KC D+E A + FL  +
Sbjct: 317 VASLLSACASVGAGYKGKQLHSYVIKMGMSSDLIIEGSLLDLYVKCFDIETAHEYFLTTE 376

Query: 235 RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ 294
            ++VV WN M+  Y Q G   ++  +F +M+ EG+ P+  T+ ++L  C   G +DLG Q
Sbjct: 377 TENVVLWNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLGALDLGEQ 436

Query: 295 YFDSMVNDYGIAAKPDHYTC--MVDLLGRAGKLVEAVDLIKKM 335
               ++       + + Y C  ++D+  + G+L  A  +++++
Sbjct: 437 IHTQVIKS---GFQFNVYVCSVLIDMYAKHGELDTARGILQRL 476



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 61/229 (26%), Positives = 98/229 (42%), Gaps = 34/229 (14%)

Query: 167 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 226
           GIR N  +   +  GC +  SL   K++H  +FKS    +    + LI +Y   G++++A
Sbjct: 5   GIRANVQTYLWLFEGCFNSGSLLDAKKLHARIFKSGFDGEDVLGSRLIDIYLAHGEVDNA 64

Query: 227 CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN-- 284
            KLF +I   +V  WN +ISG        + L LF  M  E + PD  TF ++L AC+  
Sbjct: 65  IKLFDDIPSSNVSFWNKVISGLLAKKLASQVLGLFSLMITENVTPDESTFASVLRACSGG 124

Query: 285 ----------HAGLVDLGIQ----YFDSMVNDYGIAAKPD---------------HYTCM 315
                     HA ++  G        + +++ Y      D                +  M
Sbjct: 125 KAPFQVTEQIHAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDSVSWVAM 184

Query: 316 VDLLGRAGKLVEAVDLIKKM---PFKPQPAIFGTLLSACRVHKRLDLAE 361
           +  L + G+  EA+ L  +M      P P +F ++LSAC   +   L E
Sbjct: 185 ISGLSQNGREDEAILLFCQMHKSAVIPTPYVFSSVLSACTKIELFKLGE 233


>gi|297814598|ref|XP_002875182.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321020|gb|EFH51441.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 605

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 226/551 (41%), Positives = 321/551 (58%), Gaps = 19/551 (3%)

Query: 7   VNWNSVLAGFAKQ---RGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQ 63
           V++N+ L  F  +      +  A+ LFD + +PD+V +N +       S + +  F+ F 
Sbjct: 62  VSFNTKLINFCTESPTESSMSYARHLFDAMSEPDIVIFNSIARG-YSRSTNPLEVFNLFV 120

Query: 64  RLP----IKDTASWNTMISGFVQKKNMAKARDLF-LAMP---EKNSVSWSAMISGYIECG 115
            +     + D  ++ +++      K + + R L  L+M    + N      +I+ Y EC 
Sbjct: 121 EILEDDLLPDNYTFPSLLKACAVAKALEEGRQLHCLSMKLGVDDNVYVCPTLINMYTECE 180

Query: 116 QLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSL 175
            +D A  +F       VV + AMI+GY +      +   + L L R M G  ++PN  +L
Sbjct: 181 DVDAARCVFDRIVEPCVVCYNAMITGYAR-----RNRPNEALSLFREMQGKNLKPNEITL 235

Query: 176 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR 235
            SVL  C+ L SL LGK +H+   K   CK     T LI M+ KCG L+DA  +F  ++ 
Sbjct: 236 LSVLSSCALLGSLDLGKWIHEYAKKHGFCKYVKVNTALIDMFAKCGSLDDAVSIFENMRY 295

Query: 236 KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQY 295
           KD   W+AMI  YA HG+ E ++ +F++M+ E ++PD ITF+ LL AC+H GLV+ G +Y
Sbjct: 296 KDTQAWSAMIVAYANHGQAENSMLMFERMRSENVQPDEITFLGLLNACSHTGLVEEGREY 355

Query: 296 FDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHK 355
           F  MV+++GI     HY  MVDLLGRAG L +A + I K+P  P P ++  LL+AC  H 
Sbjct: 356 FSWMVHEFGIVPSIKHYGSMVDLLGRAGHLEDAYEFIDKLPISPTPMLWRILLAACSSHN 415

Query: 356 RLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSW 415
            L+LAE  +  +  L+ ++  G YV L+N+YA  KKW+ V  +R  MK+   VK+PG S 
Sbjct: 416 NLELAEKVSERILELDDSH-GGDYVILSNLYARNKKWEAVDSLRKVMKDRKAVKVPGCSS 474

Query: 416 IEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHA-VGEEVKEQLL 474
           IEV  VVHEF SGD V      +H  L E+ K +KLAGYVPD    +HA +G++ KE  L
Sbjct: 475 IEVNNVVHEFFSGDGVKSATTKLHRALDEMVKELKLAGYVPDTSMVVHADMGDQEKEITL 534

Query: 475 LFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHF 534
            +HSEKLAIAFGL+  P GT IRV KNLRVC DCH A K IS I  R++++RD  RFHHF
Sbjct: 535 RYHSEKLAIAFGLLNTPPGTTIRVVKNLRVCRDCHSAAKLISLIFGRKVVLRDVQRFHHF 594

Query: 535 KDGTCSCGDYW 545
           +DG CSC D+W
Sbjct: 595 EDGKCSCRDFW 605


>gi|15221566|ref|NP_177059.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75333633|sp|Q9CAA8.1|PP108_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g68930
 gi|12323213|gb|AAG51585.1|AC011665_6 hypothetical protein [Arabidopsis thaliana]
 gi|332196743|gb|AEE34864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 743

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 226/564 (40%), Positives = 318/564 (56%), Gaps = 47/564 (8%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G + DA+++F  +   + V YN ++   LL    +  A   F+ +  KD+ SW  MI G 
Sbjct: 188 GCISDAKKVFYGLDDRNTVMYNSLMGG-LLACGMIEDALQLFRGME-KDSVSWAAMIKGL 245

Query: 81  VQKKNMAKARDLFLAMP---------------------------------------EKNS 101
            Q     +A + F  M                                        + + 
Sbjct: 246 AQNGLAKEAIECFREMKVQGLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQDHI 305

Query: 102 VSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLR 161
              SA+I  Y +C  L  A  +F     K+VV+WTAM+ GY + G      AE+ +K+  
Sbjct: 306 YVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGR-----AEEAVKIFL 360

Query: 162 MMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCG 221
            M   GI P+  +L   +  C+++SSL+ G Q H     S L    T    L+++Y KCG
Sbjct: 361 DMQRSGIDPDHYTLGQAISACANVSSLEEGSQFHGKAITSGLIHYVTVSNSLVTLYGKCG 420

Query: 222 DLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLL 281
           D++D+ +LF E+  +D V+W AM+S YAQ G+  + ++LFDKM   G+KPD +T   ++ 
Sbjct: 421 DIDDSTRLFNEMNVRDAVSWTAMVSAYAQFGRAVETIQLFDKMVQHGLKPDGVTLTGVIS 480

Query: 282 ACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQP 341
           AC+ AGLV+ G +YF  M ++YGI     HY+CM+DL  R+G+L EA+  I  MPF P  
Sbjct: 481 ACSRAGLVEKGQRYFKLMTSEYGIVPSIGHYSCMIDLFSRSGRLEEAMRFINGMPFPPDA 540

Query: 342 AIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLS 401
             + TLLSACR    L++ ++AA +L  L+P + AG Y  L++IYA+  KWD VA++R  
Sbjct: 541 IGWTTLLSACRNKGNLEIGKWAAESLIELDPHHPAG-YTLLSSIYASKGKWDSVAQLRRG 599

Query: 402 MKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFA 461
           M+E NV K PG SWI+    +H F + D   P L  I+ KL+EL  ++   GY PD  F 
Sbjct: 600 MREKNVKKEPGQSWIKWKGKLHSFSADDESSPYLDQIYAKLEELNNKIIDNGYKPDTSFV 659

Query: 462 LHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKR 521
            H V E VK ++L +HSE+LAIAFGLI VP G PIRV KNLRVC DCH ATK+IS++  R
Sbjct: 660 HHDVEEAVKVKMLNYHSERLAIAFGLIFVPSGQPIRVGKNLRVCVDCHNATKHISSVTGR 719

Query: 522 EIIVRDTTRFHHFKDGTCSCGDYW 545
           EI+VRD  RFH FKDGTCSCGD+W
Sbjct: 720 EILVRDAVRFHRFKDGTCSCGDFW 743



 Score =  121 bits (304), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 104/445 (23%), Positives = 184/445 (41%), Gaps = 102/445 (22%)

Query: 6   TVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD-FFQR 64
           T  +N+++  +A  +     A+ +FD+IPQP++ S+N +L  +  +   +++  +  F++
Sbjct: 41  TFLYNNIVHAYALMKSSTY-ARRVFDRIPQPNLFSWNNLL--LAYSKAGLISEMESTFEK 97

Query: 65  LPIKDTASWNTMISGFVQKKNMAKA--------RDL-----------FLAMPEKNS-VSW 104
           LP +D  +WN +I G+     +  A        RD             L +   N  VS 
Sbjct: 98  LPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMRDFSANLTRVTLMTMLKLSSSNGHVSL 157

Query: 105 SAMISG--------------------YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMK 144
              I G                    Y   G +  A ++F     ++ V + +++ G + 
Sbjct: 158 GKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKKVFYGLDDRNTVMYNSLMGGLLA 217

Query: 145 FGYVEN-------------SW------------AEDGLKLLRMMIGLGIRPNASSLSSVL 179
            G +E+             SW            A++ ++  R M   G++ +     SVL
Sbjct: 218 CGMIEDALQLFRGMEKDSVSWAAMIKGLAQNGLAKEAIECFREMKVQGLKMDQYPFGSVL 277

Query: 180 LGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVV 239
             C  L ++  GKQ+H  + ++         + LI MYCKC  L  A  +F  +++K+VV
Sbjct: 278 PACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVV 337

Query: 240 TWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYF--- 296
           +W AM+ GY Q G+ E+A+++F  M+  G+ PD  T    + AC +   ++ G Q+    
Sbjct: 338 SWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISACANVSSLEEGSQFHGKA 397

Query: 297 ------------DSMVNDYGIAAKPD---------------HYTCMVDLLGRAGKLVEAV 329
                       +S+V  YG     D                +T MV    + G+ VE +
Sbjct: 398 ITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNVRDAVSWTAMVSAYAQFGRAVETI 457

Query: 330 DLIKKM---PFKPQPAIFGTLLSAC 351
            L  KM     KP       ++SAC
Sbjct: 458 QLFDKMVQHGLKPDGVTLTGVISAC 482



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 91/356 (25%), Positives = 144/356 (40%), Gaps = 69/356 (19%)

Query: 60  DFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDK 119
           +  + LP  +T  +N ++  +   K+   AR +F  +P+ N  SW+ ++  Y + G + +
Sbjct: 31  NIIRALPYPETFLYNNIVHAYALMKSSTYARRVFDRIPQPNLFSWNNLLLAYSKAGLISE 90

Query: 120 AVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVL 179
               F+  P +  V W  +I GY   G V  +          MM          +L ++L
Sbjct: 91  MESTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNT----MMRDFSANLTRVTLMTML 146

Query: 180 LGCSHLSSLQLGKQVHQLVFK----------SPLC---------------------KDTT 208
              S    + LGKQ+H  V K          SPL                      ++T 
Sbjct: 147 KLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKKVFYGLDDRNTV 206

Query: 209 ALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEG 268
               L+     CG +EDA +LF  ++ KD V+W AMI G AQ+G  ++A+  F +MK +G
Sbjct: 207 MYNSLMGGLLACGMIEDALQLFRGME-KDSVSWAAMIKGLAQNGLAKEAIECFREMKVQG 265

Query: 269 MKPDSITFVALLLACNHAGLVDLGIQ--------------YFDSMVNDYGIAAKPDHY-- 312
           +K D   F ++L AC   G ++ G Q              Y  S + D     K  HY  
Sbjct: 266 LKMDQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCKCKCLHYAK 325

Query: 313 --------------TCMVDLLGRAGKLVEAVDL---IKKMPFKPQPAIFGTLLSAC 351
                         T MV   G+ G+  EAV +   +++    P     G  +SAC
Sbjct: 326 TVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISAC 381


>gi|449443608|ref|XP_004139569.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Cucumis sativus]
          Length = 878

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 220/569 (38%), Positives = 321/569 (56%), Gaps = 53/569 (9%)

Query: 16  FAKQR--GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRL-PIKDTAS 72
           F KQ   G +K+  E    I    +V+Y+            V  AF  F       +  +
Sbjct: 324 FTKQLHCGVVKNGYEFAQDIRTALMVTYS--------KCSSVDEAFKLFSMADAAHNVVT 375

Query: 73  WNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISG------------------ 110
           W  MI GFVQ  N  KA DLF  M  +    N  ++S +++G                  
Sbjct: 376 WTAMIGGFVQNNNNEKAVDLFCQMSREGVRPNHFTYSTVLAGKPSSLLSQLHAQIIKAYY 435

Query: 111 -------------YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGL 157
                        Y++ G + ++  +F   P K +VAW+AM++G       +   +E  +
Sbjct: 436 EKVPSVATALLDAYVKTGNVVESARVFYSIPAKDIVAWSAMLTGL-----AQTRDSEKAM 490

Query: 158 KLLRMMIGLGIRPNASSLSSVLLGCSH-LSSLQLGKQVHQLVFKSPLCKDTTALTPLISM 216
           ++   ++  G++PN  + SSV+  CS   ++++ GKQ+H    KS         + L++M
Sbjct: 491 EVFIQLVKEGVKPNEYTFSSVINACSSSAATVEHGKQIHATAVKSGKSNALCVSSALLTM 550

Query: 217 YCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITF 276
           Y K G++E A K+F   + +D+V+WN+MI+GY QHG  +KAL +F  M+++G+  D +TF
Sbjct: 551 YSKKGNIESAEKVFTRQEERDIVSWNSMITGYGQHGDAKKALEVFQIMQNQGLPLDDVTF 610

Query: 277 VALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 336
           + +L AC HAGLV+ G +YF+ M+ DY I  K +HY+CMVDL  RAG   +A+D+I  MP
Sbjct: 611 IGVLTACTHAGLVEEGEKYFNIMIKDYHIDKKIEHYSCMVDLYSRAGMFDKAMDIINGMP 670

Query: 337 FKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVA 396
           F   P I+ TLL+ACRVH+ L+L + AA  L +L P +A G YV L+NI+A    W++ A
Sbjct: 671 FPASPTIWRTLLAACRVHRNLELGKLAAEKLVSLQPNDAVG-YVLLSNIHAVAGNWEEKA 729

Query: 397 RIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVP 456
            +R  M E  V K  G SWIE+   +  F +GD  HP    ++ KL+EL  ++K  GY P
Sbjct: 730 HVRKLMDERKVKKEAGCSWIEIKNRIFSFLAGDVSHPFSDLVYAKLEELSIKLKDMGYQP 789

Query: 457 DLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYIS 516
           D  +  H V EE KE +L  HSE+LAIA+GLI +P G PI++ KNLR+CGDCH   + IS
Sbjct: 790 DTNYVFHDVEEEHKEAILSQHSERLAIAYGLIALPPGAPIQIEKNLRICGDCHNVIELIS 849

Query: 517 AIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
            IE+R +IVRD+ RFHHFK G CSCG YW
Sbjct: 850 LIEERTLIVRDSNRFHHFKGGVCSCGGYW 878



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 82/324 (25%), Positives = 144/324 (44%), Gaps = 18/324 (5%)

Query: 23  LKDAQELFDKIPQPDVVSYNIMLSCILLN--SDDVVAAFDFFQRLPIKDTASWNTMISGF 80
            +D + +FD++   +VVS+  +LS    N  +D+V+   +  Q   +         + G 
Sbjct: 155 FEDGRGIFDEMGIKNVVSWTSLLSGYARNGLNDEVIHLINQMQMEGVNPNGFTFATVLGA 214

Query: 81  VQKKNMAKARDLFLAMPEKNSVSWS-----AMISGYIECGQLDKAVELFKVAPVKSVVAW 135
           +  +++ +      AM  KN   ++     A+I  Y++   +  A  +F    V+  V W
Sbjct: 215 LADESIIEGGVQVHAMIVKNGFEFTTFVCNALICMYLKSEMVGDAEAVFDSMVVRDSVTW 274

Query: 136 TAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVH 195
             MI GY   G+       +G ++   M   G++ + +   + L  CS    L   KQ+H
Sbjct: 275 NIMIGGYAAIGFYL-----EGFQMFHRMRLAGVKLSRTVFCTALKLCSQQRELNFTKQLH 329

Query: 196 QLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF-LEIQRKDVVTWNAMISGYAQHGKG 254
             V K+         T L+  Y KC  +++A KLF +     +VVTW AMI G+ Q+   
Sbjct: 330 CGVVKNGYEFAQDIRTALMVTYSKCSSVDEAFKLFSMADAAHNVVTWTAMIGGFVQNNNN 389

Query: 255 EKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTC 314
           EKA+ LF +M  EG++P+  T+  +L     + L  L  Q   +          P   T 
Sbjct: 390 EKAVDLFCQMSREGVRPNHFTYSTVLAGKPSSLLSQLHAQIIKAYYEKV-----PSVATA 444

Query: 315 MVDLLGRAGKLVEAVDLIKKMPFK 338
           ++D   + G +VE+  +   +P K
Sbjct: 445 LLDAYVKTGNVVESARVFYSIPAK 468



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 93/175 (53%), Gaps = 5/175 (2%)

Query: 120 AVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVL 179
           A +LF   P+K +  +  ++     F +  N+   + L L + +   G+  +  +LS  L
Sbjct: 57  AHQLFDETPLKDISHYNRLL-----FDFSRNNHDREALHLFKDLHSSGLGVDGLTLSCAL 111

Query: 180 LGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVV 239
             C  L    +G+QVH    KS   +D +  T L+ MY K  D ED   +F E+  K+VV
Sbjct: 112 KVCGVLFDQVVGRQVHCQSLKSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVV 171

Query: 240 TWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ 294
           +W +++SGYA++G  ++ + L ++M+ EG+ P+  TF  +L A     +++ G+Q
Sbjct: 172 SWTSLLSGYARNGLNDEVIHLINQMQMEGVNPNGFTFATVLGALADESIIEGGVQ 226


>gi|255559863|ref|XP_002520950.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539787|gb|EEF41367.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 835

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 238/619 (38%), Positives = 333/619 (53%), Gaps = 84/619 (13%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIP----QPDVVSY-NIMLSC----ILLNSDD 54
           K  V WNS+L GF  Q G   +A E F  +     +PD VS  +I+++      LLN  +
Sbjct: 224 KDIVTWNSMLTGFI-QNGLYSEALEFFYDLQNADLKPDQVSIISIIVASGRLGYLLNGKE 282

Query: 55  VVA-----AFD------------------------FFQRLPIKDTASWNTMISGFVQKKN 85
           + A      FD                         F  +  KD  SW T  +G+ Q K 
Sbjct: 283 IHAYAIKNGFDSNILVGNTLIDMYAKCCCMSYGGRAFDLMAHKDLISWTTAAAGYAQNKC 342

Query: 86  MAKARDLF-------------------LAMPEKNSVSWSAMISGYI-------------- 112
             +A +L                    LA    N +     I GY               
Sbjct: 343 YLQALELLRQLQMEGMDVDATMIGSILLACRGLNCLGKIKEIHGYTIRGGLSDPVLQNTI 402

Query: 113 -----ECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLG 167
                ECG +D AV +F+    K VV+WT+MIS Y     V N  A   L++   M   G
Sbjct: 403 IDVYGECGIIDYAVRIFESIECKDVVSWTSMISCY-----VHNGLANKALEVFSSMKETG 457

Query: 168 IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC 227
           + P+  +L S+L     LS+L+ GK++H  + +     + +    L+ MY +CG +EDA 
Sbjct: 458 LEPDYVTLVSILSAVCSLSTLKKGKEIHGFIIRKGFILEGSISNTLVDMYARCGSVEDAY 517

Query: 228 KLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG 287
           K+F   + ++++ W AMIS Y  HG GE A+ LF +MKDE + PD ITF+ALL AC+H+G
Sbjct: 518 KIFTCTKNRNLILWTAMISAYGMHGYGEAAVELFMRMKDEKIIPDHITFLALLYACSHSG 577

Query: 288 LVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTL 347
           LV+ G  + + M  +Y +   P+HYTC+VDLLGR   L EA  ++K M  +P P ++  L
Sbjct: 578 LVNEGKSFLEIMKCEYQLEPWPEHYTCLVDLLGRRNCLEEAYQIVKSMQNEPTPEVWCAL 637

Query: 348 LSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNV 407
           L ACR+H   ++ E AA  L  L+  N  G YV ++N++AA  +W DV  +R+ MK + +
Sbjct: 638 LGACRIHSNKEIGEVAAEKLLELDLDN-PGNYVLVSNVFAANGRWKDVEEVRMRMKGSGL 696

Query: 408 VKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKL-AGYVPDLEFALHAVG 466
            K PG SWIEVG  +H F S D++HPE   I++KL ++ +++K   GYV   +F LH VG
Sbjct: 697 TKNPGCSWIEVGNKIHAFLSRDKLHPECDKIYQKLAQVTEKLKREGGYVAQTKFVLHNVG 756

Query: 467 EEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVR 526
           EE K Q+L  HSE+LAIA+GL+    GTPIRV KNLRVCGDCH     +S   +RE+IVR
Sbjct: 757 EEEKVQMLYGHSERLAIAYGLLATAEGTPIRVTKNLRVCGDCHSFCTLVSRFFERELIVR 816

Query: 527 DTTRFHHFKDGTCSCGDYW 545
           D +RFHHFKDG CSCGD+W
Sbjct: 817 DASRFHHFKDGMCSCGDFW 835



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 67/282 (23%), Positives = 139/282 (49%), Gaps = 27/282 (9%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP----IKDTASWNTM 76
           G + DA+ +FDK+ +  + ++N M+   + N +  + A + ++ +       D+ ++  +
Sbjct: 6   GSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGE-ALGALEMYREMRHLGVSFDSYTFPVL 64

Query: 77  ISGFVQKKNMAKARDLFLAMP----------EKNSVSWSAMISGYIECGQLDKAVELFKV 126
           +      K      DLF              +      +++++ Y +C  ++ A +LF  
Sbjct: 65  L------KACGIVEDLFCGAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDR 118

Query: 127 APVKS-VVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHL 185
             V++ VV+W ++IS Y       N    + L L   M+  G+  N  + ++ L  C   
Sbjct: 119 MYVRNDVVSWNSIISAYSG-----NGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDS 173

Query: 186 SSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMI 245
           S ++LG Q+H  + KS    D      L++MY + G + +A  +F  ++ KD+VTWN+M+
Sbjct: 174 SFIKLGMQIHAAILKSGRVLDVYVANALVAMYVRFGKMPEAAVIFGNLEGKDIVTWNSML 233

Query: 246 SGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG 287
           +G+ Q+G   +AL  F  +++  +KPD ++ +++++A    G
Sbjct: 234 TGFIQNGLYSEALEFFYDLQNADLKPDQVSIISIIVASGRLG 275



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 60/185 (32%), Positives = 95/185 (51%), Gaps = 6/185 (3%)

Query: 111 YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRP 170
           Y +CG +  A  +F     +S+  W AM+ GY     V N  A   L++ R M  LG+  
Sbjct: 2   YGKCGSVLDAEMIFDKMSERSIFTWNAMMGGY-----VSNGEALGALEMYREMRHLGVSF 56

Query: 171 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 230
           ++ +   +L  C  +  L  G ++H L  K         +  L+++Y KC D+  A KLF
Sbjct: 57  DSYTFPVLLKACGIVEDLFCGAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLF 116

Query: 231 LEIQ-RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLV 289
             +  R DVV+WN++IS Y+ +G   +AL LF +M   G+  ++ TF A L AC  +  +
Sbjct: 117 DRMYVRNDVVSWNSIISAYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFI 176

Query: 290 DLGIQ 294
            LG+Q
Sbjct: 177 KLGMQ 181



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 99/403 (24%), Positives = 186/403 (46%), Gaps = 50/403 (12%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKI-PQPDVVSYNIMLS------------CI---LLNSD 53
           NS++A +AK    +  A++LFD++  + DVVS+N ++S            C+   +L + 
Sbjct: 97  NSLVALYAKCN-DINGARKLFDRMYVRNDVVSWNSIISAYSGNGMCTEALCLFSEMLKAG 155

Query: 54  DVVAAFDFFQRLPIKDTASW---NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISG 110
            V   + F   L   + +S+      I   + K    +  D+++A         +A+++ 
Sbjct: 156 VVTNTYTFAAALQACEDSSFIKLGMQIHAAILKS--GRVLDVYVA---------NALVAM 204

Query: 111 YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRP 170
           Y+  G++ +A  +F     K +V W +M++G+     ++N    + L+    +    ++P
Sbjct: 205 YVRFGKMPEAAVIFGNLEGKDIVTWNSMLTGF-----IQNGLYSEALEFFYDLQNADLKP 259

Query: 171 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 230
           +  S+ S+++    L  L  GK++H    K+    +      LI MY KC  +    + F
Sbjct: 260 DQVSIISIIVASGRLGYLLNGKEIHAYAIKNGFDSNILVGNTLIDMYAKCCCMSYGGRAF 319

Query: 231 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVD 290
             +  KD+++W    +GYAQ+    +AL L  +++ EGM  D+    ++LLAC   GL  
Sbjct: 320 DLMAHKDLISWTTAAAGYAQNKCYLQALELLRQLQMEGMDVDATMIGSILLACR--GLNC 377

Query: 291 LG-IQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLS 349
           LG I+         G+ + P     ++D+ G  G +  AV + + +  K    +  T + 
Sbjct: 378 LGKIKEIHGYTIRGGL-SDPVLQNTIIDVYGECGIIDYAVRIFESIECK--DVVSWTSMI 434

Query: 350 ACRVHKRL---DLAEFAAMNLFNLNPANAAGCYVQLANIYAAM 389
           +C VH  L    L  F++M    L P      YV L +I +A+
Sbjct: 435 SCYVHNGLANKALEVFSSMKETGLEPD-----YVTLVSILSAV 472



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 42/68 (61%)

Query: 216 MYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSIT 275
           MY KCG + DA  +F ++  + + TWNAM+ GY  +G+   AL ++ +M+  G+  DS T
Sbjct: 1   MYGKCGSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYT 60

Query: 276 FVALLLAC 283
           F  LL AC
Sbjct: 61  FPVLLKAC 68


>gi|124360536|gb|ABN08546.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 1083

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 221/532 (41%), Positives = 323/532 (60%), Gaps = 17/532 (3%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPI----KDTASWNTM 76
           G+L+DAQ +FD++   D+VS+N +++    N+D    A  FF+ + +     D  +  ++
Sbjct: 271 GRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPS-TALRFFKGMQLGGIRPDLLTVVSL 329

Query: 77  ISGFVQKKNMAKARDL--FLAMPE---KNSVSWSAMISGYIECGQLDKAVELFKVAPVKS 131
            S F Q  +   +R +  F+   E   K+ V  +A+++ Y + G ++ A  +F   P K 
Sbjct: 330 TSIFSQLSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKD 389

Query: 132 VVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGL-GIRPNASSLSSVLLGCSHLSSLQL 190
            ++W  +++GY      +N  A + +    MM       PN  +  S++   SH+ +LQ 
Sbjct: 390 TISWNTLVTGY-----TQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAYSHVGALQQ 444

Query: 191 GKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQ 250
           G ++H  + K+ L  D    T LI +Y KCG LEDA  LF EI R   V WNA+I+    
Sbjct: 445 GMKIHAKLIKNSLYLDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDTSVPWNAIIASLGI 504

Query: 251 HGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPD 310
           HG+GE+AL+LF  M  E +K D ITFV+LL AC+H+GLVD G + FD M  +YGI     
Sbjct: 505 HGRGEEALQLFKDMLAERVKADHITFVSLLSACSHSGLVDEGQKCFDIMQKEYGIKPSLK 564

Query: 311 HYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNL 370
           HY CMVDLLGRAG L +A +L++ MP +P  +I+G LLSAC+++   +L   A+  L  +
Sbjct: 565 HYGCMVDLLGRAGYLEKAYELVRNMPIQPDASIWGALLSACKIYGNAELGTLASDRLLEV 624

Query: 371 NPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDR 430
           +  N  G YV L+NIYA  +KW+ V ++R   ++  + K PG+S + VG+    F +G++
Sbjct: 625 DSENV-GYYVLLSNIYANTEKWEGVIKVRSLARDRGLRKTPGWSSVVVGSKAEVFYTGNQ 683

Query: 431 VHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKV 490
            HP+   I+++LK L  +MK  GYVPD  F    + E+ KEQ+L  HSE+LAIAFG+I  
Sbjct: 684 THPKYTEIYKELKVLSAKMKSLGYVPDYSFVYQDIEEDEKEQILNSHSERLAIAFGIIST 743

Query: 491 PLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCG 542
           P  +PIR+FKNLRVCGDCH ATKYIS I +REI+VRD+ RFHHFKDG CSC 
Sbjct: 744 PPRSPIRIFKNLRVCGDCHNATKYISRISEREIVVRDSNRFHHFKDGICSCA 795



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 85/345 (24%), Positives = 160/345 (46%), Gaps = 58/345 (16%)

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP-------------------- 97
           A   F  +P+KD  SWN MISGF Q  N A A  +   M                     
Sbjct: 175 AHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQ 234

Query: 98  -------------------EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAM 138
                              + +    +A+I+ Y + G+L  A  +F    V+ +V+W ++
Sbjct: 235 SDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSI 294

Query: 139 ISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLV 198
           I+ Y      +N+     L+  + M   GIRP+  ++ S+    S LS  ++ + +   V
Sbjct: 295 IAAYE-----QNNDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQRISRSILGFV 349

Query: 199 FKSP-LCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKA 257
            +   L KD      L++MY K G +  A  +F ++ RKD ++WN +++GY Q+G   +A
Sbjct: 350 IRREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWNTLVTGYTQNGLASEA 409

Query: 258 LRLFDKMKD-EGMKPDSITFVALLLACNHAGLVDLGIQYF-----DSMVNDYGIAAKPDH 311
           +  ++ M++     P+  T+V+++ A +H G +  G++       +S+  D  +A     
Sbjct: 410 IDAYNMMEECRDTIPNQGTWVSIIPAYSHVGALQQGMKIHAKLIKNSLYLDVFVA----- 464

Query: 312 YTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKR 356
            TC++DL G+ G+L +A+ L  ++P +     +  ++++  +H R
Sbjct: 465 -TCLIDLYGKCGRLEDAMSLFYEIP-RDTSVPWNAIIASLGIHGR 507



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 81/284 (28%), Positives = 131/284 (46%), Gaps = 49/284 (17%)

Query: 40  SYNIMLSCILLN----SDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKA------ 89
           S NI+LS  L+N      D+  +   F  +  K+  SWN++IS +V+     +A      
Sbjct: 51  SQNIVLSTKLINLYVTHGDISLSRSTFDYIHKKNIFSWNSIISAYVRFGKYHEAMNCVNQ 110

Query: 90  ----------RDLFLAMP------------------------EKNSVSWSAMISGYIECG 115
                     R  F   P                        E +    ++++  Y   G
Sbjct: 111 LFSMCGGGHLRPDFYTFPPILKACVSLVDGKKVHCCVFKMGFEDDVFVAASLVHLYSRYG 170

Query: 116 QLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSL 175
            LD A ++F   PVK V +W AMISG+      +N  A   L +L  M G G++ +  ++
Sbjct: 171 VLDVAHKVFVDMPVKDVGSWNAMISGF-----CQNGNAAGALGVLNRMKGEGVKMDTITV 225

Query: 176 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR 235
           +S+L  C+    +  G  +H  V K  L  D      LI+MY K G L+DA  +F +++ 
Sbjct: 226 ASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEV 285

Query: 236 KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVAL 279
           +D+V+WN++I+ Y Q+     ALR F  M+  G++PD +T V+L
Sbjct: 286 RDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSL 329



 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 77/270 (28%), Positives = 134/270 (49%), Gaps = 8/270 (2%)

Query: 71  ASWNTMISGFVQKKNMAKARDLFLAM-PEKNSVSWSAMISGYIECGQLDKAVELFKVAPV 129
           A +N + +  V      K   L L     +N V  + +I+ Y+  G +  +   F     
Sbjct: 23  ADFNALFNSCVNVNATKKLHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIHK 82

Query: 130 KSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLG-IRPNASSLSSVLLGCSHLSSL 188
           K++ +W ++IS Y++FG      A + +  L  M G G +RP+  +   +L  C    SL
Sbjct: 83  KNIFSWNSIISAYVRFGKYHE--AMNCVNQLFSMCGGGHLRPDFYTFPPILKACV---SL 137

Query: 189 QLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGY 248
             GK+VH  VFK     D      L+ +Y + G L+ A K+F+++  KDV +WNAMISG+
Sbjct: 138 VDGKKVHCCVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGF 197

Query: 249 AQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK 308
            Q+G    AL + ++MK EG+K D+IT  ++L  C  +  V  G+      V  +G+ + 
Sbjct: 198 CQNGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGV-LIHLHVLKHGLDSD 256

Query: 309 PDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 338
                 ++++  + G+L +A  +  +M  +
Sbjct: 257 VFVSNALINMYSKFGRLQDAQMVFDQMEVR 286


>gi|224061246|ref|XP_002300388.1| predicted protein [Populus trichocarpa]
 gi|222847646|gb|EEE85193.1| predicted protein [Populus trichocarpa]
          Length = 514

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 223/521 (42%), Positives = 311/521 (59%), Gaps = 13/521 (2%)

Query: 29  LFDKIPQPDVVSYNIMLSCILLNSDDVVAA---FDFFQRLPIKDTASWNTMISGFVQK-K 84
           LFD +P     S+ ++ +C+ L+  DVV        FQ+L          MI        
Sbjct: 3   LFDVLPDTFTCSF-VLKACLKLS--DVVNGKTIHGLFQKLGFGSNLFLQNMILNLYGLCG 59

Query: 85  NMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMK 144
            M  A  LF  MP++++V+W+ +I+   + G +D A   F   P K+V +WT+MISG+++
Sbjct: 60  EMGDAMLLFEKMPQRDAVTWNIVIAQLAKRGDIDGAYGFFLRMPNKNVRSWTSMISGFVQ 119

Query: 145 FGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLC 204
            G        + + L   +    +RPN  ++ SVL  C+ L  L LG+ VH+   KS   
Sbjct: 120 CGK-----PNEAIDLFMKLEDEAVRPNEVTVVSVLAACADLGDLDLGRIVHEYSTKSGFK 174

Query: 205 KDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKM 264
           ++      LI MY KCG LE+A ++F E++ + VV+W+AMI+G A HG+ E+AL LF +M
Sbjct: 175 RNVHVCNTLIDMYVKCGCLENARRVFYEMEERTVVSWSAMIAGLAMHGQAEEALCLFSEM 234

Query: 265 KDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGK 324
              G+KP+ +TF+ LL AC+H GL+D G ++F SM  DYG+  + +HY C+VDL  RAG 
Sbjct: 235 IKLGVKPNGVTFIGLLHACSHMGLIDEGRRFFASMTADYGVIPQIEHYGCVVDLFSRAGL 294

Query: 325 LVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLAN 384
           L EA + I  MP KP   ++G LL  C+VHK +DLAE A  +L  L+P N  G YV ++N
Sbjct: 295 LEEAHEFILSMPIKPNGVVWGALLGGCKVHKNIDLAEEAIKHLSELDPLN-DGYYVVISN 353

Query: 385 IYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKE 444
           IYA  ++W+D AR+R  MK+  V K  G+S I V  VVHEF +GD+ HP+   I +   +
Sbjct: 354 IYAEAERWEDAARVRKLMKDRGVKKTSGWSSITVNGVVHEFVAGDQTHPQAEDICKIWDK 413

Query: 445 LEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRV 504
           L  +MK  GY P     L  + E+ KE+ L  HSEKLA+ FGL+  P GTPIR+ KNLRV
Sbjct: 414 LLVKMKRRGYAPKTSVVLLDMEEKEKEKFLYRHSEKLAVVFGLMTTPEGTPIRIMKNLRV 473

Query: 505 CGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           C DCH A K IS I  REIIVRD  RFH F+DG CSC D+W
Sbjct: 474 CEDCHAALKIISGIVSREIIVRDRNRFHCFRDGQCSCRDFW 514



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 77/277 (27%), Positives = 130/277 (46%), Gaps = 57/277 (20%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G++ DA  LF+K+PQ D V++NI+++  L    D+  A+ FF R+P K+  SW +MISGF
Sbjct: 59  GEMGDAMLLFEKMPQRDAVTWNIVIA-QLAKRGDIDGAYGFFLRMPNKNVRSWTSMISGF 117

Query: 81  VQKKNMAKARDLFLAMPE---------------------------------------KNS 101
           VQ     +A DLF+ + +                                       +N 
Sbjct: 118 VQCGKPNEAIDLFMKLEDEAVRPNEVTVVSVLAACADLGDLDLGRIVHEYSTKSGFKRNV 177

Query: 102 VSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLR 161
              + +I  Y++CG L+ A  +F     ++VV+W+AMI+G    G      AE+ L L  
Sbjct: 178 HVCNTLIDMYVKCGCLENARRVFYEMEERTVVSWSAMIAGLAMHGQ-----AEEALCLFS 232

Query: 162 MMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPL------IS 215
            MI LG++PN  +   +L  CSH+  +  G++     F + +  D   +  +      + 
Sbjct: 233 EMIKLGVKPNGVTFIGLLHACSHMGLIDEGRR-----FFASMTADYGVIPQIEHYGCVVD 287

Query: 216 MYCKCGDLEDACKLFLEIQRK-DVVTWNAMISGYAQH 251
           ++ + G LE+A +  L +  K + V W A++ G   H
Sbjct: 288 LFSRAGLLEEAHEFILSMPIKPNGVVWGALLGGCKVH 324


>gi|328774761|gb|AEB39780.1| pentatricopeptide repeat protein 45 [Funaria hygrometrica]
          Length = 1097

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 217/523 (41%), Positives = 289/523 (55%), Gaps = 44/523 (8%)

Query: 61   FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP-------------------EKNS 101
             F +L ++   +WN MI G  Q++   +A  LFL M                    ++ +
Sbjct: 581  LFDKLSVRHVTTWNAMIGGAAQQRCGREALSLFLQMQREGFIPDATTFINILSANVDEEA 640

Query: 102  VSW-------------------SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGY 142
            + W                   +A++  Y +CG +  A ++F     ++V  WT MI G 
Sbjct: 641  LEWVKEVHSHATDAGLVDLRVGNALVHTYSKCGNVKYAKQVFDDMVERNVTTWTMMIGGL 700

Query: 143  MKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSP 202
             + G        D       M+  GI P+A++  S+L  C+   +L+  K+VH     + 
Sbjct: 701  AQHG-----CGHDAFSHFLQMLREGIVPDATTYVSILSACASTGALEWVKEVHNHAVSAG 755

Query: 203  LCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFD 262
            L  D      L+ MY KCG ++DA  +F ++  +DV +W  MI G AQHG+G +AL  F 
Sbjct: 756  LVSDLRVGNALVHMYAKCGSIDDARSVFDDMVERDVFSWTVMIGGLAQHGRGLEALDFFV 815

Query: 263  KMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRA 322
            KMK EG KP+  ++VA+L AC+HAGLVD G + F SM  DYGI    +HYTCMVDLLGRA
Sbjct: 816  KMKSEGFKPNGYSYVAVLTACSHAGLVDEGRRQFLSMTQDYGIEPTMEHYTCMVDLLGRA 875

Query: 323  GKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQL 382
            G L EA   I  MP +P  A +G LL AC  +  L++AEFAA     L P +A+  YV L
Sbjct: 876  GLLEEAELFILNMPIEPDDAPWGALLGACVTYGNLEMAEFAAKERLKLKPKSAS-TYVLL 934

Query: 383  ANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKL 442
            +NIYAA  KW+    +R  M+   + K PG SWIEV   +H F  GD  HPE   I+ +L
Sbjct: 935  SNIYAATGKWEQKLLVRSMMQRKGIRKEPGRSWIEVDNRIHSFVVGDTSHPESKEIYAQL 994

Query: 443  KELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNL 502
             +L +R+K  GYVPD    L    +E KEQ L  HSEKLAI +GL+      PIRV+KNL
Sbjct: 995  NDLIERLKAKGYVPDTRLVLRNTDQEHKEQALCSHSEKLAIVYGLMHTQSKDPIRVYKNL 1054

Query: 503  RVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
            RVC DCH ATK+IS I  REI+ RD  RFHHFKDG CSCGDYW
Sbjct: 1055 RVCSDCHTATKFISKITGREIVARDAKRFHHFKDGVCSCGDYW 1097



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 80/289 (27%), Positives = 152/289 (52%), Gaps = 17/289 (5%)

Query: 51  NSDDVVAAFDFFQRLPIK-------DTASWNTMISGFVQKKNMAKARDLFLAM----PEK 99
            + +V+ A D    L I+       D+ S+  ++   ++++++  A+ + + +     E+
Sbjct: 92  QTHNVITAKDAVAMLKIRVQQGIAIDSFSYVNILQRCLKQEDILLAKQVHVCIIKSGMEQ 151

Query: 100 NSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKL 159
           N    + ++  YI CG+L  A ++F     K++  WT MI GY ++G+     AED +++
Sbjct: 152 NLYVANKLLRVYIRCGRLQCARQVFDKLLKKNIYIWTTMIGGYAEYGH-----AEDAMRV 206

Query: 160 LRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCK 219
              M     +PN  +  S+L  C    +L+ GK++H  + +S    D    T L++MY K
Sbjct: 207 YDKMRQECGQPNEITYLSILKACCCPVNLKWGKKIHAHIIQSGFQSDVRVETALVNMYVK 266

Query: 220 CGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVAL 279
           CG +EDA  +F ++  ++V++W  MI G A +G+G++A  LF +M+ EG  P+S T+V++
Sbjct: 267 CGSIEDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHLFLQMQREGFIPNSYTYVSI 326

Query: 280 LLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEA 328
           L A   AG ++   +     VN  G+A        +V +  ++G + +A
Sbjct: 327 LNANASAGALEWVKEVHSHAVN-AGLALDLRVGNALVHMYAKSGSIDDA 374



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 105/383 (27%), Positives = 173/383 (45%), Gaps = 49/383 (12%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP--- 66
           N+++  +AK  G + DA+ +FD +   DV+S+N M+  +  N     A   F Q      
Sbjct: 462 NALIHMYAKC-GSIDDARLVFDGMCDRDVISWNAMMGGLAQNGCGHEAFTVFLQMQQEGL 520

Query: 67  IKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVS----WSAMISGYIECGQLDKAVE 122
           + D+ ++ ++++       +    ++     E   +S     SA I  YI CG +D A  
Sbjct: 521 VPDSTTYLSLLNTHGSTDALEWVNEVHKHAVETGLISDFRVGSAFIHMYIRCGSIDDARL 580

Query: 123 LFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGC 182
           LF    V+ V  W AMI      G  +     + L L   M   G  P+A++  ++L   
Sbjct: 581 LFDKLSVRHVTTWNAMIG-----GAAQQRCGREALSLFLQMQREGFIPDATTFINILSAN 635

Query: 183 SHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWN 242
               +L+  K+VH     + L  D      L+  Y KCG+++ A ++F ++  ++V TW 
Sbjct: 636 VDEEALEWVKEVHSHATDAGLV-DLRVGNALVHTYSKCGNVKYAKQVFDDMVERNVTTWT 694

Query: 243 AMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC-------------NH---A 286
            MI G AQHG G  A   F +M  EG+ PD+ T+V++L AC             NH   A
Sbjct: 695 MMIGGLAQHGCGHDAFSHFLQMLREGIVPDATTYVSILSACASTGALEWVKEVHNHAVSA 754

Query: 287 GLVDLGIQYFDSMVNDYGIAAKPD---------------HYTCMVDLLGRAGKLVEAVDL 331
           GLV   ++  +++V+ Y      D                +T M+  L + G+ +EA+D 
Sbjct: 755 GLVS-DLRVGNALVHMYAKCGSIDDARSVFDDMVERDVFSWTVMIGGLAQHGRGLEALDF 813

Query: 332 IKKMP---FKPQPAIFGTLLSAC 351
             KM    FKP    +  +L+AC
Sbjct: 814 FVKMKSEGFKPNGYSYVAVLTAC 836



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 114/458 (24%), Positives = 191/458 (41%), Gaps = 74/458 (16%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNS--DDVVAAFDFFQR--- 64
           N+++  +AK  G + DA+ +FD + + D+ S+ +M+  +  +    +  + F   QR   
Sbjct: 359 NALVHMYAKS-GSIDDARVVFDGMTERDIFSWTVMIGGLAQHGRGQEAFSLFLQMQRNGC 417

Query: 65  LPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVS----WSAMISGYIECGQLDKA 120
           LP   T       S       +   + +     E   +S     +A+I  Y +CG +D A
Sbjct: 418 LPNLTTYLSILNASAIASTSALEWVKVVHKHAEEAGFISDLRIGNALIHMYAKCGSIDDA 477

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLL 180
             +F     + V++W AM+ G       +N    +   +   M   G+ P++++  S+L 
Sbjct: 478 RLVFDGMCDRDVISWNAMMGGL-----AQNGCGHEAFTVFLQMQQEGLVPDSTTYLSLLN 532

Query: 181 GCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVT 240
                 +L+   +VH+   ++ L  D    +  I MY +CG ++DA  LF ++  + V T
Sbjct: 533 THGSTDALEWVNEVHKHAVETGLISDFRVGSAFIHMYIRCGSIDDARLLFDKLSVRHVTT 592

Query: 241 WNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA----------------CN 284
           WNAMI G AQ   G +AL LF +M+ EG  PD+ TF+ +L A                  
Sbjct: 593 WNAMIGGAAQQRCGREALSLFLQMQREGFIPDATTFINILSANVDEEALEWVKEVHSHAT 652

Query: 285 HAGLVDLGI------------------QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLV 326
            AGLVDL +                  Q FD MV           +T M+  L + G   
Sbjct: 653 DAGLVDLRVGNALVHTYSKCGNVKYAKQVFDDMVE-----RNVTTWTMMIGGLAQHGCGH 707

Query: 327 EAVDLIKKM---PFKPQPAIFGTLLSACRVHKRLDLAE------FAAMNLFNLNPANAAG 377
           +A     +M      P    + ++LSAC     L+  +       +A  + +L   NA  
Sbjct: 708 DAFSHFLQMLREGIVPDATTYVSILSACASTGALEWVKEVHNHAVSAGLVSDLRVGNA-- 765

Query: 378 CYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSW 415
               L ++YA     DD   +   M E +V     +SW
Sbjct: 766 ----LVHMYAKCGSIDDARSVFDDMVERDV-----FSW 794



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 69/279 (24%), Positives = 131/279 (46%), Gaps = 40/279 (14%)

Query: 9   WNSVLAGFAKQRGKLKDAQELFDKI----PQPDVVSY-NIMLSCILLNSDDVVAAFDFFQ 63
           W +++ G+A + G  +DA  ++DK+     QP+ ++Y +I+ +C                
Sbjct: 187 WTTMIGGYA-EYGHAEDAMRVYDKMRQECGQPNEITYLSILKACCC-------------- 231

Query: 64  RLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVEL 123
             P+     W   I   + +              + +    +A+++ Y++CG ++ A  +
Sbjct: 232 --PV--NLKWGKKIHAHIIQSGF-----------QSDVRVETALVNMYVKCGSIEDAQLI 276

Query: 124 FKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCS 183
           F     ++V++WT MI G   +G       ++   L   M   G  PN+ +  S+L   +
Sbjct: 277 FDKMVERNVISWTVMIGGLAHYGR-----GQEAFHLFLQMQREGFIPNSYTYVSILNANA 331

Query: 184 HLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNA 243
              +L+  K+VH     + L  D      L+ MY K G ++DA  +F  +  +D+ +W  
Sbjct: 332 SAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGMTERDIFSWTV 391

Query: 244 MISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA 282
           MI G AQHG+G++A  LF +M+  G  P+  T++++L A
Sbjct: 392 MIGGLAQHGRGQEAFSLFLQMQRNGCLPNLTTYLSILNA 430


>gi|224124674|ref|XP_002330082.1| predicted protein [Populus trichocarpa]
 gi|222871507|gb|EEF08638.1| predicted protein [Populus trichocarpa]
          Length = 665

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 214/477 (44%), Positives = 297/477 (62%), Gaps = 6/477 (1%)

Query: 69  DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAP 128
           D   +N MI G+++   +  A++LF +M +KN  SW+ M+SG  +CG +++A ELF    
Sbjct: 195 DVICFNAMIDGYLKCGEVEAAKELFWSMEDKNVGSWNVMVSGMAKCGMIEEARELFNEMK 254

Query: 129 VKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSL 188
            K+ ++W+AMI GY+K GY +     + L++  +M    IRP    LSSVL  C++L +L
Sbjct: 255 EKNEISWSAMIDGYIKGGYYK-----EALEVFNVMQREEIRPRKFVLSSVLAACANLGAL 309

Query: 189 QLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGY 248
             G+ +H  V  +    D    T L+ MY KCG L+ A  +F ++++K+V TWNAMI G 
Sbjct: 310 DQGRWIHAYVNNNSNSFDAVLGTALVDMYAKCGRLDMAWDVFEKMEKKEVFTWNAMICGL 369

Query: 249 AQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK 308
             HG+ E A+ LF KM+ +  +P+ IT + +L AC H+G+VD G++ F+SM   YGI   
Sbjct: 370 GMHGRAEDAIELFFKMQKQKFRPNGITLLGVLSACAHSGMVDEGLRIFNSMEEVYGIEPG 429

Query: 309 PDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLF 368
            +HY C+VDLLGRAG L EA +++  MP +P  A++G LL ACR H  ++L E     L 
Sbjct: 430 MEHYGCVVDLLGRAGLLGEAEEVMYSMPMEPSAAVWGALLGACRKHGDVELGERVGKILL 489

Query: 369 NLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSG 428
            L P N +G Y  L+NIYA   +WDDVA +R  MKE  V    G S I+   VVHEF+ G
Sbjct: 490 ELEPQN-SGRYALLSNIYARAGRWDDVANVRKLMKERGVKTSTGISMIDFDGVVHEFKMG 548

Query: 429 DRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLI 488
           D  HP++ +I+  LK + KR+K+ G+ P+    L  + EE KE  L +HSEKLAIAFGLI
Sbjct: 549 DGSHPQMKNIYLMLKNMIKRLKMEGFSPNTSQVLFDIEEEEKEAELQYHSEKLAIAFGLI 608

Query: 489 KVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
               GT I V KNLR+C DCH A K IS +  REIIVRD  R+HHFK GTCSC D+W
Sbjct: 609 NTKPGTTIHVVKNLRMCEDCHSAFKLISQVYDREIIVRDRARYHHFKTGTCSCKDFW 665



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 69/281 (24%), Positives = 129/281 (45%), Gaps = 17/281 (6%)

Query: 116 QLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSL 175
            L+ A+++F+  P  +V  +  +I G ++     N   +      +MMI    RPN  + 
Sbjct: 79  NLNFALKVFEYVPNPNVFVFNIIIKGCLQ----NNEPCKAICCYYKMMIAHA-RPNKFTY 133

Query: 176 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR 235
            ++   C+   + + G QVH  V K  L  D    +  I MY   G++E A ++  E   
Sbjct: 134 PTLFKACTAAEAAEEGVQVHAHVIKQGLSGDVHIRSAGIQMYGSFGEVEGARRMLGEDGN 193

Query: 236 KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQY 295
            DV+ +NAMI GY + G+ E A  LF  M+D+ +   ++  V+ +  C   G+++   + 
Sbjct: 194 SDVICFNAMIDGYLKCGEVEAAKELFWSMEDKNVGSWNV-MVSGMAKC---GMIEEAREL 249

Query: 296 FDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM---PFKPQPAIFGTLLSACR 352
           F+ M     I+     ++ M+D   + G   EA+++   M     +P+  +  ++L+AC 
Sbjct: 250 FNEMKEKNEIS-----WSAMIDGYIKGGYYKEALEVFNVMQREEIRPRKFVLSSVLAACA 304

Query: 353 VHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWD 393
               LD   +    + N + +  A     L ++YA   + D
Sbjct: 305 NLGALDQGRWIHAYVNNNSNSFDAVLGTALVDMYAKCGRLD 345



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 58/285 (20%), Positives = 119/285 (41%), Gaps = 53/285 (18%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILL---------- 50
           M  K  ++W++++ G+ K  G  K+A E+F+ + + ++     +LS +L           
Sbjct: 253 MKEKNEISWSAMIDGYIKG-GYYKEALEVFNVMQREEIRPRKFVLSSVLAACANLGALDQ 311

Query: 51  ------------NSDDVV----------------AAFDFFQRLPIKDTASWNTMISGFVQ 82
                       NS D V                 A+D F+++  K+  +WN MI G   
Sbjct: 312 GRWIHAYVNNNSNSFDAVLGTALVDMYAKCGRLDMAWDVFEKMEKKEVFTWNAMICGLGM 371

Query: 83  KKNMAKARDLFLAMPEK----NSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAM 138
                 A +LF  M ++    N ++   ++S     G +D+ + +F      S+     +
Sbjct: 372 HGRAEDAIELFFKMQKQKFRPNGITLLGVLSACAHSGMVDEGLRIF-----NSMEEVYGI 426

Query: 139 ISGYMKFGYVENSWAEDGL--KLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQ 196
             G   +G V +     GL  +   +M  + + P+A+   ++L  C     ++LG++V +
Sbjct: 427 EPGMEHYGCVVDLLGRAGLLGEAEEVMYSMPMEPSAAVWGALLGACRKHGDVELGERVGK 486

Query: 197 LVFK-SPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVT 240
           ++ +  P      AL  L ++Y + G  +D   +   ++ + V T
Sbjct: 487 ILLELEPQNSGRYAL--LSNIYARAGRWDDVANVRKLMKERGVKT 529



 Score = 42.0 bits (97), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 53/118 (44%), Gaps = 2/118 (1%)

Query: 179 LLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCK--CGDLEDACKLFLEIQRK 236
           LL     +SL   KQVH +  ++   +D      L+  Y      +L  A K+F  +   
Sbjct: 34  LLNTKSSTSLHHLKQVHAVALRTGHFQDHYVSGTLVKCYANPHFSNLNFALKVFEYVPNP 93

Query: 237 DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ 294
           +V  +N +I G  Q+ +  KA+  + KM     +P+  T+  L  AC  A   + G+Q
Sbjct: 94  NVFVFNIIIKGCLQNNEPCKAICCYYKMMIAHARPNKFTYPTLFKACTAAEAAEEGVQ 151


>gi|224061617|ref|XP_002300569.1| predicted protein [Populus trichocarpa]
 gi|222847827|gb|EEE85374.1| predicted protein [Populus trichocarpa]
          Length = 568

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 226/528 (42%), Positives = 308/528 (58%), Gaps = 47/528 (8%)

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP-------------------- 97
           A   F  +P +D  SWN MISG+ Q  N A+A D+   M                     
Sbjct: 48  ARKLFDDMPARDRGSWNAMISGYCQNGNAAEALDIADEMRLEGVKMDAITVASVLPVCAQ 107

Query: 98  -------------------EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAM 138
                              E      +A+I+ Y + G L  A ++F +  +K VV+W  +
Sbjct: 108 VGDILSGKLIHLYVIKHGLEFELFVSNALINMYAKFGSLGHAQKVFGLL-IKDVVSWNTL 166

Query: 139 ISGYMKFGYVENSWAEDGLKL-LRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQL 197
           I+GY      +N  A + +++ L M     I PN  +  S+L   SH+ +LQ G ++H  
Sbjct: 167 ITGY-----AQNGLASEAIEVYLLMEEHEEIIPNQGTWVSILPAYSHVGALQQGMRIHGQ 221

Query: 198 VFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKA 257
           V K+ L  D    T LI MY KCG L+DA  LF ++ RK+ V WNAMIS Y  HG GEKA
Sbjct: 222 VIKNCLYSDVFVGTCLIDMYGKCGKLDDAISLFYQVPRKNSVPWNAMISCYGVHGDGEKA 281

Query: 258 LRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVD 317
           L LF +MK E +KPD ITFV+LL AC+H+GLV      F+ M  +YGI     HY CMVD
Sbjct: 282 LELFREMKAERVKPDHITFVSLLSACSHSGLVSDAQWCFNMMEEEYGIKPSLKHYGCMVD 341

Query: 318 LLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAG 377
           L GRAG+L  A + IKKMP +P  + +G LL+ACR+H  ++L + A+  LF ++  N  G
Sbjct: 342 LFGRAGELEMAFNFIKKMPIQPDASAWGALLNACRIHGNIELGKHASERLFEVDSEN-VG 400

Query: 378 CYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVS 437
            YV L+NIYA + KW+ V  +R   ++  + K PG+S I +   V  F +G++ HP+   
Sbjct: 401 YYVLLSNIYANVGKWEGVDDVRSLARDRGLRKNPGWSSIILNNKVDVFYTGNQTHPKCEE 460

Query: 438 IHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIR 497
           I+ +L++L  ++K  GYVPD  F L  V E+ KE +L+ HSE+LAIA+G+I     TPIR
Sbjct: 461 IYRELRDLTSKIKTIGYVPDFCFVLQDVEEDEKEHILMGHSERLAIAYGIISTSPKTPIR 520

Query: 498 VFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           +FKNLRVCGDCH  TK+IS I +REIIVRD++RFHHFK GTCSCGDYW
Sbjct: 521 IFKNLRVCGDCHTVTKFISIITEREIIVRDSSRFHHFKGGTCSCGDYW 568



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 77/253 (30%), Positives = 136/253 (53%), Gaps = 13/253 (5%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI 164
           ++++  Y   G +  A +LF   P +   +W AMIS     GY +N  A + L +   M 
Sbjct: 33  ASLVHMYSRFGLVGDARKLFDDMPARDRGSWNAMIS-----GYCQNGNAAEALDIADEMR 87

Query: 165 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 224
             G++ +A +++SVL  C+ +  +  GK +H  V K  L  +      LI+MY K G L 
Sbjct: 88  LEGVKMDAITVASVLPVCAQVGDILSGKLIHLYVIKHGLEFELFVSNALINMYAKFGSLG 147

Query: 225 DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKD-EGMKPDSITFVALLLAC 283
            A K+F  +  KDVV+WN +I+GYAQ+G   +A+ ++  M++ E + P+  T+V++L A 
Sbjct: 148 HAQKVF-GLLIKDVVSWNTLITGYAQNGLASEAIEVYLLMEEHEEIIPNQGTWVSILPAY 206

Query: 284 NHAGLVDLGIQYFDSMVNDYGIAAKPDHY--TCMVDLLGRAGKLVEAVDLIKKMPFKPQP 341
           +H G +  G++    ++ +       D +  TC++D+ G+ GKL +A+ L  ++P K   
Sbjct: 207 SHVGALQQGMRIHGQVIKN---CLYSDVFVGTCLIDMYGKCGKLDDAISLFYQVPRK-NS 262

Query: 342 AIFGTLLSACRVH 354
             +  ++S   VH
Sbjct: 263 VPWNAMISCYGVH 275



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 40/97 (41%), Positives = 58/97 (59%)

Query: 191 GKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQ 250
           GK++H LV K     D      L+ MY + G + DA KLF ++  +D  +WNAMISGY Q
Sbjct: 13  GKKIHCLVLKLGFEWDVFVAASLVHMYSRFGLVGDARKLFDDMPARDRGSWNAMISGYCQ 72

Query: 251 HGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG 287
           +G   +AL + D+M+ EG+K D+IT  ++L  C   G
Sbjct: 73  NGNAAEALDIADEMRLEGVKMDAITVASVLPVCAQVG 109



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 64/286 (22%), Positives = 123/286 (43%), Gaps = 25/286 (8%)

Query: 3   VKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFF 62
           +K  V+WN+++ G+A Q G   +A E++  + + + +  N      +L +   V A    
Sbjct: 157 IKDVVSWNTLITGYA-QNGLASEAIEVYLLMEEHEEIIPNQGTWVSILPAYSHVGALQQG 215

Query: 63  QRLP--------IKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIEC 114
            R+           D      +I  + +   +  A  LF  +P KNSV W+AMIS Y   
Sbjct: 216 MRIHGQVIKNCLYSDVFVGTCLIDMYGKCGKLDDAISLFYQVPRKNSVPWNAMISCYGVH 275

Query: 115 GQLDKAVELFKVAPVKSV----VAWTAMISGYMKFGYVENS-WAEDGLKLLRMMIGLGIR 169
           G  +KA+ELF+    + V    + + +++S     G V ++ W  +      M    GI+
Sbjct: 276 GDGEKALELFREMKAERVKPDHITFVSLLSACSHSGLVSDAQWCFN-----MMEEEYGIK 330

Query: 170 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE---DA 226
           P+      ++        L++       + K P+  D +A   L++     G++E    A
Sbjct: 331 PSLKHYGCMVDLFGRAGELEMA---FNFIKKMPIQPDASAWGALLNACRIHGNIELGKHA 387

Query: 227 CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPD 272
            +   E+  ++V  +  + + YA  GK E    +    +D G++ +
Sbjct: 388 SERLFEVDSENVGYYVLLSNIYANVGKWEGVDDVRSLARDRGLRKN 433


>gi|356521082|ref|XP_003529187.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Glycine max]
          Length = 780

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 220/537 (40%), Positives = 324/537 (60%), Gaps = 18/537 (3%)

Query: 19  QRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMIS 78
           + G++ +AQ+ F+++P+ D++ +++M+S     SD    A + F R+        N    
Sbjct: 252 KSGEIAEAQQFFEEMPKDDLIPWSLMIS-RYAQSDKSKEALELFCRMRQSSVVVPNNFTF 310

Query: 79  GFVQKK----------NMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAP 128
             V +           N   +  L + +     VS +A++  Y +CG+++ +V+LF  + 
Sbjct: 311 ASVLQACASLVLLNLGNQIHSCVLKVGLDSNVFVS-NALMDVYAKCGEIENSVKLFTGST 369

Query: 129 VKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSL 188
            K+ VAW  +I GY++ G       E  L L   M+GL I+P   + SSVL   + L +L
Sbjct: 370 EKNEVAWNTIIVGYVQLGD-----GEKALNLFSNMLGLDIQPTEVTYSSVLRASASLVAL 424

Query: 189 QLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGY 248
           + G+Q+H L  K+   KD+     LI MY KCG ++DA   F ++ ++D V+WNA+I GY
Sbjct: 425 EPGRQIHSLTIKTMYNKDSVVANSLIDMYAKCGRIDDARLTFDKMDKQDEVSWNALICGY 484

Query: 249 AQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK 308
           + HG G +AL LFD M+    KP+ +TFV +L AC++AGL+D G  +F SM+ DYGI   
Sbjct: 485 SIHGLGMEALNLFDMMQQSNSKPNKLTFVGVLSACSNAGLLDKGRAHFKSMLQDYGIEPC 544

Query: 309 PDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLF 368
            +HYTCMV LLGR+G+  EAV LI ++PF+P   ++  LL AC +HK LDL +  A  + 
Sbjct: 545 IEHYTCMVWLLGRSGQFDEAVKLIGEIPFQPSVMVWRALLGACVIHKNLDLGKVCAQRVL 604

Query: 369 NLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSG 428
            + P + A  +V L+N+YA  K+WD+VA +R +MK+  V K PG SW+E   VVH F  G
Sbjct: 605 EMEPQDDA-THVLLSNMYATAKRWDNVAYVRKNMKKKKVKKEPGLSWVENQGVVHYFTVG 663

Query: 429 DRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLI 488
           D  HP +  I   L+ L K+ + AGYVPD    L  V ++ KE+LL  HSE+LA+AFGLI
Sbjct: 664 DTSHPNIKLIFAMLEWLYKKTRDAGYVPDCSVVLLDVEDDEKERLLWMHSERLALAFGLI 723

Query: 489 KVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           ++P G  IR+ KNLR+C DCH   K +S I +REI++RD  RFHHF+ G CSCGDYW
Sbjct: 724 QIPSGCSIRIIKNLRICVDCHAVIKLVSKIVQREIVIRDINRFHHFRQGVCSCGDYW 780



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 97/342 (28%), Positives = 160/342 (46%), Gaps = 38/342 (11%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDV----------------VAAFDFFQR 64
           G L+DA +LFD++P  + VS+ + L+     S                   V  F F   
Sbjct: 52  GFLEDASKLFDEMPLTNTVSF-VTLAQGFSRSHQFQRARRLLLRLFREGYEVNQFVFTTL 110

Query: 65  LPI---KDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAV 121
           L +    D A     +  +V K  +    D F+          +A+I  Y  CG +D A 
Sbjct: 111 LKLLVSMDLADTCLSVHAYVYK--LGHQADAFVG---------TALIDAYSVCGNVDAAR 159

Query: 122 ELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLG 181
           ++F     K +V+WT M++ Y      EN   ED L L   M  +G RPN  ++S+ L  
Sbjct: 160 QVFDGIYFKDMVSWTGMVACY-----AENYCHEDSLLLFCQMRIMGYRPNNFTISAALKS 214

Query: 182 CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTW 241
           C+ L + ++GK VH    K    +D      L+ +Y K G++ +A + F E+ + D++ W
Sbjct: 215 CNGLEAFKVGKSVHGCALKVCYDRDLYVGIALLELYTKSGEIAEAQQFFEEMPKDDLIPW 274

Query: 242 NAMISGYAQHGKGEKALRLFDKMKDEG-MKPDSITFVALLLACNHAGLVDLGIQYFDSMV 300
           + MIS YAQ  K ++AL LF +M+    + P++ TF ++L AC    L++LG Q   S V
Sbjct: 275 SLMISRYAQSDKSKEALELFCRMRQSSVVVPNNFTFASVLQACASLVLLNLGNQ-IHSCV 333

Query: 301 NDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPA 342
              G+ +       ++D+  + G++  +V L      K + A
Sbjct: 334 LKVGLDSNVFVSNALMDVYAKCGEIENSVKLFTGSTEKNEVA 375



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 65/281 (23%), Positives = 129/281 (45%), Gaps = 28/281 (9%)

Query: 69  DTASWNTMISGFVQKKNMAKARDLFLAMPEKNS----VSWSAMISGYIECGQLDKAVELF 124
           D+ S+  M+   ++ ++    + L   + +  +     + + +++ Y+  G L+ A +LF
Sbjct: 2   DSHSYANMLQQAIRNRDPNAGKSLHCHILKHGASLDLFAQNILLNTYVHFGFLEDASKLF 61

Query: 125 KVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSH 184
              P+ + V++  +  G+ +    + +               G   N    +++L     
Sbjct: 62  DEMPLTNTVSFVTLAQGFSRSHQFQRARRLLLRLFRE-----GYEVNQFVFTTLL---KL 113

Query: 185 LSSLQLGK---QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTW 241
           L S+ L      VH  V+K     D    T LI  Y  CG+++ A ++F  I  KD+V+W
Sbjct: 114 LVSMDLADTCLSVHAYVYKLGHQADAFVGTALIDAYSVCGNVDAARQVFDGIYFKDMVSW 173

Query: 242 NAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN 301
             M++ YA++   E +L LF +M+  G +P++ T  A L +CN       G++ F    +
Sbjct: 174 TGMVACYAENYCHEDSLLLFCQMRIMGYRPNNFTISAALKSCN-------GLEAFKVGKS 226

Query: 302 DYGIAAK----PDHYT--CMVDLLGRAGKLVEAVDLIKKMP 336
            +G A K     D Y    +++L  ++G++ EA    ++MP
Sbjct: 227 VHGCALKVCYDRDLYVGIALLELYTKSGEIAEAQQFFEEMP 267



 Score = 39.3 bits (90), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 44/187 (23%), Positives = 77/187 (41%), Gaps = 6/187 (3%)

Query: 191 GKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQ 250
           GK +H  + K     D  A   L++ Y   G LEDA KLF E+   + V++  +  G+++
Sbjct: 22  GKSLHCHILKHGASLDLFAQNILLNTYVHFGFLEDASKLFDEMPLTNTVSFVTLAQGFSR 81

Query: 251 HGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPD 310
             + ++A RL  ++  EG + +   F  LL       L D  +     +   Y +  + D
Sbjct: 82  SHQFQRARRLLLRLFREGYEVNQFVFTTLLKLLVSMDLADTCLSVHAYV---YKLGHQAD 138

Query: 311 HY--TCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLD-LAEFAAMNL 367
            +  T ++D     G +  A  +   + FK   +  G +      +   D L  F  M +
Sbjct: 139 AFVGTALIDAYSVCGNVDAARQVFDGIYFKDMVSWTGMVACYAENYCHEDSLLLFCQMRI 198

Query: 368 FNLNPAN 374
               P N
Sbjct: 199 MGYRPNN 205


>gi|297738034|emb|CBI27235.3| unnamed protein product [Vitis vinifera]
          Length = 696

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 224/558 (40%), Positives = 330/558 (59%), Gaps = 24/558 (4%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQ 63
           KT  N N+++A +AK  G++ D++ LF+     D+VS+N M+S     SD    A  FF+
Sbjct: 147 KTFTN-NALMAMYAKL-GRVDDSKALFESFVDRDMVSWNTMISS-FSQSDRFSEALAFFR 203

Query: 64  RLPIKDTASWNTMISGFV------QKKNMAKARDLFLAMPE---KNSVSWSAMISGYIEC 114
            + ++        I+  +      ++ ++ K    ++       +NS   SA++  Y  C
Sbjct: 204 LMVLEGVELDGVTIASVLPACSHLERLDVGKEIHAYVLRNNDLIENSFVGSALVDMYCNC 263

Query: 115 GQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASS 174
            Q++    +F     + +  W AMISGY + G  E +     +  + M+   G+ PN ++
Sbjct: 264 RQVESGRRVFDHILGRRIELWNAMISGYARNGLDEKAL----ILFIEMIKVAGLLPNTTT 319

Query: 175 LSSVLLGCSH-LSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI 233
           ++SV+  C H L+++  GK++H    ++ L  D T  + L+ MY KCG L  + ++F E+
Sbjct: 320 MASVMPACVHSLAAIAKGKEIHAYAIRNMLASDITVGSALVDMYAKCGCLNLSRRVFNEM 379

Query: 234 QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEG-----MKPDSITFVALLLACNHAGL 288
             K+V+TWN +I     HGKGE+AL LF  M  E       KP+ +TF+ +  AC+H+GL
Sbjct: 380 PNKNVITWNVLIMACGMHGKGEEALELFKNMVAEAGRGGEAKPNEVTFITVFAACSHSGL 439

Query: 289 VDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK-PQPAIFGTL 347
           +  G+  F  M +D+G+    DHY C+VDLLGRAG+L EA +L+  MP +  +   + +L
Sbjct: 440 ISEGLNLFYRMKHDHGVEPTSDHYACVVDLLGRAGQLEEAYELVNTMPAEFDKVGAWSSL 499

Query: 348 LSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNV 407
           L ACR+H+ ++L E AA NL +L P N A  YV L+NIY++   W+    +R +M++  V
Sbjct: 500 LGACRIHQNVELGEVAAKNLLHLEP-NVASHYVLLSNIYSSAGLWNKAMEVRKNMRQMGV 558

Query: 408 VKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGE 467
            K PG SWIE    VH+F +GD  HP+   +H  L+ L ++M+  GYVPD    LH V E
Sbjct: 559 KKEPGCSWIEFRDEVHKFMAGDVSHPQSEQLHGFLETLSEKMRKEGYVPDTSCVLHNVDE 618

Query: 468 EVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRD 527
           + KE LL  HSEKLAIAFG++  P GT IRV KNLRVC DCH ATK+IS I +REIIVRD
Sbjct: 619 DEKENLLCGHSEKLAIAFGILNTPPGTTIRVAKNLRVCNDCHAATKFISKIMEREIIVRD 678

Query: 528 TTRFHHFKDGTCSCGDYW 545
             RFHHFK+GTCSCGDYW
Sbjct: 679 VRRFHHFKEGTCSCGDYW 696



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 85/188 (45%), Gaps = 26/188 (13%)

Query: 126 VAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHL 185
            +P +S  +W   +    +     N + E     + M +  G RP+  +  +VL   S L
Sbjct: 51  TSPSRSTASWVDALRSRTR----SNDFREAISTYIEMTVS-GARPDNFAFPAVLKAVSGL 105

Query: 186 SSLQLGKQVHQLVFKSPLCKDT-TALTPLISMYCKCGDL--------------------E 224
             L+ G+Q+H    K      + T    L++MY KCG +                    +
Sbjct: 106 QDLKTGEQIHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDKTFTNNALMAMYAKLGRVD 165

Query: 225 DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 284
           D+  LF     +D+V+WN MIS ++Q  +  +AL  F  M  EG++ D +T  ++L AC+
Sbjct: 166 DSKALFESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACS 225

Query: 285 HAGLVDLG 292
           H   +D+G
Sbjct: 226 HLERLDVG 233


>gi|449514605|ref|XP_004164425.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g49170, chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 209/534 (39%), Positives = 330/534 (61%), Gaps = 16/534 (2%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G +  A+++FD+I   +V S+  M++  +        A D F+ + +      +   S  
Sbjct: 323 GSMCAARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSST 382

Query: 81  VQK-KNMAKAR---DLF-----LAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKS 131
           ++   N+A  R    +F     L     N V+ +++IS Y   G++D A + F +   K+
Sbjct: 383 LKACANLAALRIGEQVFTHAVKLGFSSVNCVA-NSLISMYARSGRIDDARKAFDILFEKN 441

Query: 132 VVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLG 191
           ++++  +I  Y K     N  +E+ L+L   +   G+  +A + +S+L G + + ++  G
Sbjct: 442 LISYNTVIDAYAK-----NLNSEEALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKG 496

Query: 192 KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQH 251
           +Q+H  V KS L  + +    LISMY +CG++E A ++F +++ ++V++W ++I+G+A+H
Sbjct: 497 EQIHARVIKSGLKLNQSVCNALISMYSRCGNIESAFQVFEDMEDRNVISWTSIITGFAKH 556

Query: 252 GKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDH 311
           G   +AL LF KM +EG++P+ +T++A+L AC+H GLV+ G ++F SM  ++G+  + +H
Sbjct: 557 GFATQALELFHKMLEEGVRPNEVTYIAVLSACSHVGLVNEGWKHFKSMYTEHGVIPRMEH 616

Query: 312 YTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLN 371
           Y C+VD+LGR+G L EA+  I  MP+K    ++ T L ACRVH  L+L + AA  +    
Sbjct: 617 YACIVDILGRSGSLSEAIQFINSMPYKADALVWRTFLGACRVHGNLELGKHAAKMIIEQE 676

Query: 372 PANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRV 431
           P + A  Y+ L+N+YA++ KWD+V+ IR +MKE  ++K  G SW+EV   VH+F  GD  
Sbjct: 677 PHDPAA-YILLSNLYASISKWDEVSNIRKAMKEKXLIKEAGCSWVEVENKVHKFYVGDTS 735

Query: 432 HPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVP 491
           HP+   I+++L+ L  ++K  GYVP+L+F LH V EE KE+LL  HSEK+A+AFGLI   
Sbjct: 736 HPKAAEIYDELQNLSVKIKKLGYVPNLDFVLHDVEEEQKEKLLFQHSEKIAVAFGLISTS 795

Query: 492 LGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
              PIRVFKNLR+CGDCH A KYIS    REIIVRD  RFHH KDG CSC +YW
Sbjct: 796 KMKPIRVFKNLRICGDCHSAIKYISMATGREIIVRDANRFHHIKDGRCSCNEYW 849



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 105/389 (26%), Positives = 179/389 (46%), Gaps = 48/389 (12%)

Query: 6   TVNWNSVLAGFAKQRGKLKDAQELFDKIPQP-DVVSYNIMLSCILLNSDDVVAAFDFFQR 64
           +V  NS+++ ++K  G+ + A  +F  +    D++S++ M+SC   N+    A   F   
Sbjct: 101 SVTLNSLISLYSKC-GQWEKATSIFRLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDM 159

Query: 65  LPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWS----AMISGYIE------C 114
           +            +G+   +    A     +  E  SV  S     + +GY++      C
Sbjct: 160 IE-----------NGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVIKTGYLQSDVCVGC 208

Query: 115 GQLD----------KAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI 164
           G +D           A ++F+  P ++ V WT MI+  M+FGY     A + + L   MI
Sbjct: 209 GLIDMFVKGRGDLVSAFKVFEKMPERNAVTWTLMITRLMQFGY-----AGEAIDLFLDMI 263

Query: 165 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKC---G 221
             G  P+  +LS V+  C+++  L LG+Q+H    +  L  D      LI+MY KC   G
Sbjct: 264 FSGYEPDRFTLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDG 323

Query: 222 DLEDACKLFLEIQRKDVVTWNAMISGYAQHGK-GEKALRLFDKMKDEGMKPDSITFVALL 280
            +  A K+F +I   +V +W AMI+GY Q G   E+AL LF  M    + P+  TF + L
Sbjct: 324 SMCAARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTL 383

Query: 281 LACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQ 340
            AC +   + +G Q F   V   G ++       ++ +  R+G++ +A      + F+  
Sbjct: 384 KACANLAALRIGEQVFTHAVK-LGFSSVNCVANSLISMYARSGRIDDARKAFDIL-FEKN 441

Query: 341 PAIFGTLLSACRVHKRLDLAEFAAMNLFN 369
              + T++ A    K L+  E  A+ LFN
Sbjct: 442 LISYNTVIDA--YAKNLNSEE--ALELFN 466



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 89/349 (25%), Positives = 148/349 (42%), Gaps = 45/349 (12%)

Query: 100 NSVSWSAMISGYIECGQLDKAVELFKV-APVKSVVAWTAMISGYMKFGYVENSWAEDGLK 158
           +SV+ +++IS Y +CGQ +KA  +F++    + +++W+AM+S +       N+     L 
Sbjct: 100 DSVTLNSLISLYSKCGQWEKATSIFRLMGSSRDLISWSAMVSCF-----ANNNMGFRALL 154

Query: 159 LLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSP-LCKDTTALTPLISMY 217
               MI  G  PN    ++    CS    + +G  +   V K+  L  D      LI M+
Sbjct: 155 TFVDMIENGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVIKTGYLQSDVCVGCGLIDMF 214

Query: 218 CKC-GDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITF 276
            K  GDL  A K+F ++  ++ VTW  MI+   Q G   +A+ LF  M   G +PD  T 
Sbjct: 215 VKGRGDLVSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLDMIFSGYEPDRFTL 274

Query: 277 VALLLACNHAGLVDLGIQYFDS---------------MVNDYG--------IAAKP---- 309
             ++ AC +  L+ LG Q                   ++N Y          AA+     
Sbjct: 275 SGVISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQ 334

Query: 310 --DH----YTCMVD-LLGRAGKLVEAVDLIKKMPFK---PQPAIFGTLLSACRVHKRLDL 359
             DH    +T M+   + + G   EA+DL + M      P    F + L AC     L +
Sbjct: 335 ILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRI 394

Query: 360 AEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVV 408
            E    +   L  ++       L ++YA   + DD  +    + E N++
Sbjct: 395 GEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDARKAFDILFEKNLI 443



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 58/192 (30%), Positives = 92/192 (47%), Gaps = 4/192 (2%)

Query: 148 VENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDT 207
           + N      +  L  M+  G  P+  + S  L  C    S  +G  VH+ + +S L  D+
Sbjct: 42  INNGRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDS 101

Query: 208 TALTPLISMYCKCGDLEDACKLF-LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKD 266
             L  LIS+Y KCG  E A  +F L    +D+++W+AM+S +A +  G +AL  F  M +
Sbjct: 102 VTLNSLISLYSKCGQWEKATSIFRLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIE 161

Query: 267 EGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLL--GRAGK 324
            G  P+   F A   AC+ A  V +G   F  ++    + +       ++D+   GR G 
Sbjct: 162 NGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVIKTGYLQSDVCVGCGLIDMFVKGR-GD 220

Query: 325 LVEAVDLIKKMP 336
           LV A  + +KMP
Sbjct: 221 LVSAFKVFEKMP 232


>gi|302776474|ref|XP_002971398.1| hypothetical protein SELMODRAFT_95698 [Selaginella moellendorffii]
 gi|300160530|gb|EFJ27147.1| hypothetical protein SELMODRAFT_95698 [Selaginella moellendorffii]
          Length = 562

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 225/553 (40%), Positives = 329/553 (59%), Gaps = 19/553 (3%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQ 63
           + T+  N +++ +AK  G L +A+ +F+ I +  VVS++ M+    L+     A    F 
Sbjct: 18  RATIAQNGLVSMYAKC-GCLDEARAIFNGILERTVVSWSAMIGAYALHGRGQEALL-LFH 75

Query: 64  RLPIKDTASWNTM-ISGFVQK----KNMAKARDLF-LAMPE-----KNSVSWSAMISGYI 112
           R+        N M  +G        +++ + R++  LAM        N++  +A+++ Y+
Sbjct: 76  RMRNDGRVEPNAMTFTGVFNACGVIEDLEQGREIHALAMASGELKSSNAILENALLNMYV 135

Query: 113 ECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNA 172
            CG L++A ++F         +WT+MI+        EN    + L+L   M   GI P +
Sbjct: 136 RCGSLEEARKVFDTMDHPDAFSWTSMITAC-----TENCELLEALELFHRMNLEGIPPTS 190

Query: 173 SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLE 232
            +L+SVL  C+   +L++GKQ+H  +  S       A T L+ MY KCG LE + K+F  
Sbjct: 191 VTLASVLNACACSGALKVGKQIHSRLDASGFHSSVLAQTALLDMYAKCGSLECSSKVFTA 250

Query: 233 IQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 292
           ++ ++ V+W AMI+  AQHG+G++AL LF +M  EGM  D+ TF+ +L AC+HAGL+   
Sbjct: 251 METRNSVSWTAMIAALAQHGQGDEALELFKEMNLEGMVADATTFICVLRACSHAGLIKES 310

Query: 293 IQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACR 352
           +++F SMV DY IA    HY   +D +GRAG+L +A +LI  MPF P+   + TLL+ACR
Sbjct: 311 LEFFHSMVEDYAIAPTETHYCRALDTIGRAGRLQDAEELIHSMPFHPETLTWKTLLNACR 370

Query: 353 VHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPG 412
           +H + + A   A  L  L P ++   Y  L N+YAA  ++ D  R+R  M +  + K+PG
Sbjct: 371 IHSQAERATKVAELLSKLAPEDSMA-YTLLGNVYAATGRYGDQMRVRKGMTDRGLKKVPG 429

Query: 413 YSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQ 472
            S+IEV   VHEF +GDR HP    I  +L++L  RM+ AGYVP+ +  LHAV EE KEQ
Sbjct: 430 KSFIEVKNKVHEFVAGDRAHPSRDEILLELEKLGGRMREAGYVPNTKDVLHAVNEEEKEQ 489

Query: 473 LLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFH 532
           L+  HSEKLAIAFGLI  P GTP+ + KNLRVC DCH ATK I+ I +R I+VRDT RFH
Sbjct: 490 LIGLHSEKLAIAFGLIATPPGTPLLIVKNLRVCSDCHAATKVIAKIMRRRIVVRDTHRFH 549

Query: 533 HFKDGTCSCGDYW 545
           HF+DG CSC DYW
Sbjct: 550 HFEDGQCSCKDYW 562



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 96/359 (26%), Positives = 155/359 (43%), Gaps = 97/359 (27%)

Query: 188 LQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISG 247
           ++ G+++H  +      + T A   L+SMY KCG L++A  +F  I  + VV+W+AMI  
Sbjct: 1   MEEGRRIHSRLSLCGFHRATIAQNGLVSMYAKCGCLDEARAIFNGILERTVVSWSAMIGA 60

Query: 248 YAQHGKGEKALRLFDKMKDEG-MKPDSITFVALLLACN-----------HA--------- 286
           YA HG+G++AL LF +M+++G ++P+++TF  +  AC            HA         
Sbjct: 61  YALHGRGQEALLLFHRMRNDGRVEPNAMTFTGVFNACGVIEDLEQGREIHALAMASGELK 120

Query: 287 -----------------GLVDLGIQYFDSMVNDYGIAAKPDHY--TCMVDLLGRAGKLVE 327
                            G ++   + FD+M  D+     PD +  T M+       +L+E
Sbjct: 121 SSNAILENALLNMYVRCGSLEEARKVFDTM--DH-----PDAFSWTSMITACTENCELLE 173

Query: 328 AVDLIKKMPFK---PQPAIFGTLLSAC----------RVHKRLDLAEFAAMNLFNLNPAN 374
           A++L  +M  +   P      ++L+AC          ++H RLD + F +  L       
Sbjct: 174 ALELFHRMNLEGIPPTSVTLASVLNACACSGALKVGKQIHSRLDASGFHSSVLAQ----- 228

Query: 375 AAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPE 434
                  L ++YA     +  +++  +M+  N V     SW  +   + +   GD     
Sbjct: 229 -----TALLDMYAKCGSLECSSKVFTAMETRNSV-----SWTAMIAALAQHGQGD----- 273

Query: 435 LVSIHEKLKELEKRMKLAGYVPD-------LEFALHAVGEEVKEQLLLFHS--EKLAIA 484
                E L EL K M L G V D       L    HA    +KE L  FHS  E  AIA
Sbjct: 274 -----EAL-ELFKEMNLEGMVADATTFICVLRACSHA--GLIKESLEFFHSMVEDYAIA 324


>gi|218192399|gb|EEC74826.1| hypothetical protein OsI_10663 [Oryza sativa Indica Group]
          Length = 703

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 221/571 (38%), Positives = 318/571 (55%), Gaps = 52/571 (9%)

Query: 5   TTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQR 64
           +TV  N +L   +     L DA  LF  I  PD+ S+N ++S +  +   + +A + F R
Sbjct: 61  STVLSNRLLHLLSSHPATLPDALALFSSIAAPDICSHNTLISALSRSPRHLPSARELFDR 120

Query: 65  LPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK------------------------- 99
           +P +D  +W+ ++SG+ +      A  L+  M E+                         
Sbjct: 121 MPQRDHFAWSALVSGYARHGQPEAALALYRRMQEEPGNDGADNEFTASSALAAAAAARCG 180

Query: 100 --------------------NSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMI 139
                               ++V WSA+   Y +CG++D A  +F   PV+  V+WTAM+
Sbjct: 181 RAGRELHCHVVRRGIDAAGGDAVLWSALADMYAKCGRVDDARRVFDRMPVRDAVSWTAMV 240

Query: 140 SGYMKFGYVENSWAEDGLKL-LRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLV 198
             Y   G        +G +L L M+   G+RPN  + + VL  C+  +    G+QVH  +
Sbjct: 241 ERYFDGGR-----GGEGFRLFLHMLRTRGVRPNEFTYAGVLRACAEFAVESFGRQVHGRM 295

Query: 199 FKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKAL 258
            KS       A + L+ MY KCGD+  A ++F  + + D+V+W A+ISGYAQ+G+ E+AL
Sbjct: 296 AKSGTGDSCFAESALLRMYSKCGDMGSAVRVFEAMAKPDLVSWTAVISGYAQNGQPEEAL 355

Query: 259 RLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDL 318
           R FD     G+KPD +TFV +L AC HAGLVD G++ F S+   Y I    DHY C++DL
Sbjct: 356 RYFDMFLRSGIKPDHVTFVGVLSACAHAGLVDKGLEIFHSIKEQYCIEHTADHYACVIDL 415

Query: 319 LGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGC 378
           L R+G+   A  +I  M  KP   ++ +LL  CR+HK + LA  AA  LF + P N A  
Sbjct: 416 LSRSGQFERAEKMIGNMAVKPNKFLWASLLGGCRIHKNVGLARRAAEALFEIEPENPA-T 474

Query: 379 YVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSI 438
           YV LANIYA++  +D+V  +R  M+   + KMP  SWIEVG  VH F  GD+ HP+   I
Sbjct: 475 YVTLANIYASVGLFDEVEDVRRIMESKGITKMPASSWIEVGRRVHVFLVGDKSHPKADEI 534

Query: 439 HEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRV 498
           +  LK+L  +M   GYV D+EF LH V +E KEQ + +HSE+LA+AFG+I  P G+PI+V
Sbjct: 535 YALLKKLYVKMVEEGYVADIEFVLHDVEDEQKEQDIGYHSERLAVAFGIIASPEGSPIKV 594

Query: 499 FKNLRVCGDCHRATKYISAIEKREIIVRDTT 529
           FKNLR+CGDCH A K IS I +R+IIVRD+ 
Sbjct: 595 FKNLRICGDCHAAIKLISQIVQRDIIVRDSN 625



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 145/558 (25%), Positives = 244/558 (43%), Gaps = 74/558 (13%)

Query: 6   TVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRL 65
            V W+++   +AK  G++ DA+ +FD++P  D VS+  M+               F   L
Sbjct: 202 AVLWSALADMYAKC-GRVDDARRVFDRMPVRDAVSWTAMVERYFDGGRGGEGFRLFLHML 260

Query: 66  PIK----DTASWNTMISGFVQKKNMAKARDLFLAMPEKNS----VSWSAMISGYIECGQL 117
             +    +  ++  ++    +    +  R +   M +  +     + SA++  Y +CG +
Sbjct: 261 RTRGVRPNEFTYAGVLRACAEFAVESFGRQVHGRMAKSGTGDSCFAESALLRMYSKCGDM 320

Query: 118 DKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSS 177
             AV +F+      +V+WTA+ISGY      +N   E+ L+   M +  GI+P+  +   
Sbjct: 321 GSAVRVFEAMAKPDLVSWTAVISGY-----AQNGQPEEALRYFDMFLRSGIKPDHVTFVG 375

Query: 178 VLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKD 237
           VL  C+H   +  G ++   + K   C + TA       Y        AC          
Sbjct: 376 VLSACAHAGLVDKGLEIFHSI-KEQYCIEHTA-----DHY--------AC---------- 411

Query: 238 VVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFD 297
                 +I   ++ G+ E+A ++   M    +KP+   + +LL  C     V L  +  +
Sbjct: 412 ------VIDLLSRSGQFERAEKMIGNM---AVKPNKFLWASLLGGCRIHKNVGLARRAAE 462

Query: 298 SMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRL 357
           ++         P  Y  + ++    G   E  D+ + M  K    +  +  S   V +R+
Sbjct: 463 ALFEIE--PENPATYVTLANIYASVGLFDEVEDVRRIMESKGITKMPAS--SWIEVGRRV 518

Query: 358 DLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSM-------KENNVVKM 410
            +       + + +   A   Y  L  +Y  M +   VA I   +       KE ++   
Sbjct: 519 HV-----FLVGDKSHPKADEIYALLKKLYVKMVEEGYVADIEFVLHDVEDEQKEQDIGYH 573

Query: 411 PGYSWIEVGTVVHEFRSGDRVHPELV---SIHEKLKELEKRMKLAGYVPDLEFALHAVGE 467
                +  G +     S  +V   L      H  +K + + ++    V D          
Sbjct: 574 SERLAVAFGIIASPEGSPIKVFKNLRICGDCHAAIKLISQIVQRDIIVRD--------SN 625

Query: 468 EVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRD 527
            +KEQ + +HSE+LA+AFG+I  P G+PI+VFKNLR+CGDCH A K IS I +R+IIVRD
Sbjct: 626 SLKEQDIGYHSERLAVAFGIIASPEGSPIKVFKNLRICGDCHTAIKLISQIVQRDIIVRD 685

Query: 528 TTRFHHFKDGTCSCGDYW 545
           + RFHHFKDG CSC DYW
Sbjct: 686 SNRFHHFKDGICSCRDYW 703


>gi|334185294|ref|NP_187883.2| mitochondrial editing factor 22 [Arabidopsis thaliana]
 gi|75274142|sp|Q9LTV8.1|PP224_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g12770
 gi|11994419|dbj|BAB02421.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332641723|gb|AEE75244.1| mitochondrial editing factor 22 [Arabidopsis thaliana]
          Length = 694

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 213/545 (39%), Positives = 330/545 (60%), Gaps = 17/545 (3%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPD--VVSYNIMLSCILLNSDDVVAAFDFFQRLPI 67
           N ++A +AK R +L  A+ +F+ +P P+  +VS+  ++S    N + + A   F Q   +
Sbjct: 158 NGLIALYAKCR-RLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKM 216

Query: 68  KDTASWNTMIS---GFVQKKNMAKARDLFLAMPEKN-SVSWSAMIS---GYIECGQLDKA 120
                W  ++S    F   +++ + R +  ++ +    +    +IS    Y +CGQ+  A
Sbjct: 217 DVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATA 276

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLL 180
             LF      +++ W AMISGY K GY     A + + +   MI   +RP+  S++S + 
Sbjct: 277 KILFDKMKSPNLILWNAMISGYAKNGY-----AREAIDMFHEMINKDVRPDTISITSAIS 331

Query: 181 GCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVT 240
            C+ + SL+  + +++ V +S    D    + LI M+ KCG +E A  +F     +DVV 
Sbjct: 332 ACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVV 391

Query: 241 WNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV 300
           W+AMI GY  HG+  +A+ L+  M+  G+ P+ +TF+ LL+ACNH+G+V  G  +F+ M 
Sbjct: 392 WSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWWFFNRMA 451

Query: 301 NDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLA 360
            D+ I  +  HY C++DLLGRAG L +A ++IK MP +P   ++G LLSAC+ H+ ++L 
Sbjct: 452 -DHKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHVELG 510

Query: 361 EFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGT 420
           E+AA  LF+++P+N  G YVQL+N+YAA + WD VA +R+ MKE  + K  G SW+EV  
Sbjct: 511 EYAAQQLFSIDPSNT-GHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVEVRG 569

Query: 421 VVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEK 480
            +  FR GD+ HP    I  +++ +E R+K  G+V + + +LH + +E  E+ L  HSE+
Sbjct: 570 RLEAFRVGDKSHPRYEEIERQVEWIESRLKEGGFVANKDASLHDLNDEEAEETLCSHSER 629

Query: 481 LAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCS 540
           +AIA+GLI  P GTP+R+ KNLR C +CH ATK IS +  REI+VRDT RFHHFKDG CS
Sbjct: 630 IAIAYGLISTPQGTPLRITKNLRACVNCHAATKLISKLVDREIVVRDTNRFHHFKDGVCS 689

Query: 541 CGDYW 545
           CGDYW
Sbjct: 690 CGDYW 694



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 80/348 (22%), Positives = 173/348 (49%), Gaps = 22/348 (6%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNS--DDVVAAFDFFQRLPIK-DTASWNTMI 77
           G +  A+++FD +P+P +  +N ++     N+   D +  +   Q   +  D+ ++  ++
Sbjct: 67  GDITFARQVFDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLL 126

Query: 78  SGFVQKKNMAKAR----DLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPV--KS 131
                  ++   R     +F    + +    + +I+ Y +C +L  A  +F+  P+  ++
Sbjct: 127 KACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERT 186

Query: 132 VVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLG 191
           +V+WTA++S      Y +N    + L++   M  + ++P+  +L SVL   + L  L+ G
Sbjct: 187 IVSWTAIVS-----AYAQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQG 241

Query: 192 KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQH 251
           + +H  V K  L  +   L  L +MY KCG +  A  LF +++  +++ WNAMISGYA++
Sbjct: 242 RSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKN 301

Query: 252 GKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSM-VNDYGIAAKPD 310
           G   +A+ +F +M ++ ++PD+I+  + + AC   G ++     ++ +  +DY    + D
Sbjct: 302 GYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDY----RDD 357

Query: 311 HY--TCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKR 356
            +  + ++D+  + G  VE   L+          ++  ++    +H R
Sbjct: 358 VFISSALIDMFAKCGS-VEGARLVFDRTLDRDVVVWSAMIVGYGLHGR 404



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 56/257 (21%), Positives = 106/257 (41%), Gaps = 41/257 (15%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M     + WN++++G+AK  G  ++A ++F ++   DV                      
Sbjct: 283 MKSPNLILWNAMISGYAKN-GYAREAIDMFHEMINKDVR--------------------- 320

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVS----WSAMISGYIECGQ 116
                   DT S  + IS   Q  ++ +AR ++  +   +        SA+I  + +CG 
Sbjct: 321 -------PDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGS 373

Query: 117 LDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLS 176
           ++ A  +F     + VV W+AMI GY   G      A + + L R M   G+ PN  +  
Sbjct: 374 VEGARLVFDRTLDRDVVVWSAMIVGYGLHGR-----AREAISLYRAMERGGVHPNDVTFL 428

Query: 177 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF--LEIQ 234
            +L+ C+H   ++ G      +    +         +I +  + G L+ A ++   + +Q
Sbjct: 429 GLLMACNHSGMVREGWWFFNRMADHKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQ 488

Query: 235 RKDVVTWNAMISGYAQH 251
              V  W A++S   +H
Sbjct: 489 -PGVTVWGALLSACKKH 504



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 81/171 (47%), Gaps = 5/171 (2%)

Query: 173 SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLE 232
           S  +S++   +H + L   KQ+H  +    L      +T LI      GD+  A ++F +
Sbjct: 22  SFYASLIDSATHKAQL---KQIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDD 78

Query: 233 IQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 292
           + R  +  WNA+I GY+++   + AL ++  M+   + PDS TF  LL AC+    + +G
Sbjct: 79  LPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMG 138

Query: 293 IQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAI 343
            ++  + V   G  A       ++ L  +  +L  A  + + +P  P+  I
Sbjct: 139 -RFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPL-PERTI 187


>gi|328774751|gb|AEB39775.1| pentatricopeptide repeat protein 71 [Funaria hygrometrica]
          Length = 837

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 213/532 (40%), Positives = 318/532 (59%), Gaps = 13/532 (2%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNS--DDVVAAFDFFQRLPIK-DTASWNTMI 77
           G ++ A+ +FDK+   DVVS+ +M+     NS  +D    F   Q   I+ D  ++  +I
Sbjct: 312 GSIEGARRVFDKMKVRDVVSWTVMIRGYAENSNIEDAFGLFATMQEEGIQPDRITYIHII 371

Query: 78  SGFVQKKNMAKARDLFLAMPE----KNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVV 133
           +      +++ AR++   +       + +  +A++  Y +CG +  A ++F     + VV
Sbjct: 372 NACASSADLSLAREIHSQVVRAGFGTDLLVDTALVHMYAKCGAIKDARQVFDAMSRRDVV 431

Query: 134 AWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ 193
           +W+AMI  Y     VEN   E+  +   +M    + P+  +  ++L  C HL +L LG +
Sbjct: 432 SWSAMIGAY-----VENGCGEEAFETFHLMKRNNVEPDVVTYINLLNACGHLGALDLGME 486

Query: 194 VHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGK 253
           ++    K+ L         LI+M  K G +E A  +F  + ++DVVTWN MI GY+ HG 
Sbjct: 487 IYTQAIKADLVSHIPVGNALINMNVKHGSIERARYIFENMVQRDVVTWNVMIGGYSLHGN 546

Query: 254 GEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYT 313
             +AL LFD+M  E  +P+S+TFV +L AC+ AG V+ G ++F  +++  GI    + Y 
Sbjct: 547 AREALDLFDRMLKERFRPNSVTFVGVLSACSRAGFVEEGRRFFSYLLDGRGIVPTMELYG 606

Query: 314 CMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPA 373
           CMVDLLGRAG+L EA  LI +MP KP  +I+ TLL+ACR++  LD+AE AA       P 
Sbjct: 607 CMVDLLGRAGELDEAELLINRMPLKPNSSIWSTLLAACRIYGNLDVAERAAERCLMSEPY 666

Query: 374 NAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHP 433
           + A  YVQL+++YAA   W++VA++R  M+   V K  G +WIEV   +H F   DR HP
Sbjct: 667 DGA-VYVQLSHMYAAAGMWENVAKVRKVMESRGVRKEQGCTWIEVEGKLHTFVVEDRSHP 725

Query: 434 ELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLG 493
           +   I+ +L  L   +K  GY+P  +  LH VGE+ KE+ + +HSEKLAIA+G++ +P G
Sbjct: 726 QAGEIYAELARLMTAIKREGYIPVTQNVLHNVGEQEKEEAISYHSEKLAIAYGVLSLPSG 785

Query: 494 TPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
            PIR+FKNLRVCGDCH A+K+IS +  REII RD +RFHHFK+G CSCGDYW
Sbjct: 786 APIRIFKNLRVCGDCHSASKFISKVTGREIIARDASRFHHFKNGVCSCGDYW 837



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 99/340 (29%), Positives = 160/340 (47%), Gaps = 41/340 (12%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELF----DKIPQPDVVSYNIMLSCILLNSDDVVAAF 59
           KT V WN+++AG+A Q G +K+A  LF    D+  +P ++++ I+L     +S   +   
Sbjct: 125 KTVVTWNAIIAGYA-QLGHVKEAFALFRQMVDEAMEPSIITFLIVLDA--CSSPAGLKLG 181

Query: 60  DFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDK 119
             F    IK          GFV    +                  +A++S Y++ G +D 
Sbjct: 182 KEFHAQVIK---------VGFVSDFRIG-----------------TALVSMYVKGGSMDG 215

Query: 120 AVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVL 179
           A ++F     + V  +  MI GY K G       E   +L   M   G +PN  S  S+L
Sbjct: 216 ARQVFDGLYKRDVSTFNVMIGGYAKSGD-----GEKAFQLFYRMQQEGFKPNRISFLSIL 270

Query: 180 LGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVV 239
            GCS   +L  GK VH     + L  D    T LI MY  CG +E A ++F +++ +DVV
Sbjct: 271 DGCSTPEALAWGKAVHAQCMNTGLVDDVRVATALIRMYMGCGSIEGARRVFDKMKVRDVV 330

Query: 240 TWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSM 299
           +W  MI GYA++   E A  LF  M++EG++PD IT++ ++ AC  +  + L  +    +
Sbjct: 331 SWTVMIRGYAENSNIEDAFGLFATMQEEGIQPDRITYIHIINACASSADLSLAREIHSQV 390

Query: 300 VN-DYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 338
           V   +G     D  T +V +  + G + +A  +   M  +
Sbjct: 391 VRAGFGTDLLVD--TALVHMYAKCGAIKDARQVFDAMSRR 428



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 65/171 (38%), Positives = 102/171 (59%), Gaps = 5/171 (2%)

Query: 114 CGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNAS 173
           CG + +A + F     K+VV W A+I+GY + G+V+ ++A     L R M+   + P+  
Sbjct: 109 CGNMLEARQTFDSVENKTVVTWNAIIAGYAQLGHVKEAFA-----LFRQMVDEAMEPSII 163

Query: 174 SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI 233
           +   VL  CS  + L+LGK+ H  V K     D    T L+SMY K G ++ A ++F  +
Sbjct: 164 TFLIVLDACSSPAGLKLGKEFHAQVIKVGFVSDFRIGTALVSMYVKGGSMDGARQVFDGL 223

Query: 234 QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 284
            ++DV T+N MI GYA+ G GEKA +LF +M+ EG KP+ I+F+++L  C+
Sbjct: 224 YKRDVSTFNVMIGGYAKSGDGEKAFQLFYRMQQEGFKPNRISFLSILDGCS 274



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 69/260 (26%), Positives = 110/260 (42%), Gaps = 33/260 (12%)

Query: 182 CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTW 241
           C  L    LGKQV   + +S    +   L  LI ++  CG++ +A + F  ++ K VVTW
Sbjct: 71  CMMLRDAGLGKQVRDHIIQSGRQLNIYELNTLIKLHSICGNMLEARQTFDSVENKTVVTW 130

Query: 242 NAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSM-- 299
           NA+I+GYAQ G  ++A  LF +M DE M+P  ITF+ +L AC+    + LG ++   +  
Sbjct: 131 NAIIAGYAQLGHVKEAFALFRQMVDEAMEPSIITFLIVLDACSSPAGLKLGKEFHAQVIK 190

Query: 300 ---VNDYGIAA-----------------------KPD--HYTCMVDLLGRAGKLVEAVDL 331
              V+D+ I                         K D   +  M+    ++G   +A  L
Sbjct: 191 VGFVSDFRIGTALVSMYVKGGSMDGARQVFDGLYKRDVSTFNVMIGGYAKSGDGEKAFQL 250

Query: 332 IKKMP---FKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAA 388
             +M    FKP    F ++L  C   + L   +       N    +       L  +Y  
Sbjct: 251 FYRMQQEGFKPNRISFLSILDGCSTPEALAWGKAVHAQCMNTGLVDDVRVATALIRMYMG 310

Query: 389 MKKWDDVARIRLSMKENNVV 408
               +   R+   MK  +VV
Sbjct: 311 CGSIEGARRVFDKMKVRDVV 330


>gi|297800922|ref|XP_002868345.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata]
 gi|297314181|gb|EFH44604.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata]
          Length = 1047

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 216/528 (40%), Positives = 299/528 (56%), Gaps = 45/528 (8%)

Query: 57   AAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----------NSVS--- 103
             A+D   R   KD  SW TMI+G+ Q     KA   F  M ++          N+VS   
Sbjct: 526  TAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACA 585

Query: 104  --------------------------WSAMISGYIECGQLDKAVELFKVAPVKSVVAWTA 137
                                       +A+++ Y +CG +++A   F+       +AW A
Sbjct: 586  GLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSKCGNIEEAYLAFEQTEAGDNIAWNA 645

Query: 138  MISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQL 197
            ++SG+ + G       E+ L++   M   GI  N  +  S +   S  ++++ GKQVH +
Sbjct: 646  LVSGFQQSGN-----NEEALRVFARMNREGIDSNNFTFGSAVKAASETANMKQGKQVHAV 700

Query: 198  VFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKA 257
            + K+    +T     +ISMY KCG + DA K FLE+  K+ V+WNAMI+ Y++HG G +A
Sbjct: 701  ITKTGYDSETEVCNAIISMYAKCGSISDAKKQFLELSMKNEVSWNAMINAYSKHGFGSEA 760

Query: 258  LRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVD 317
            L  FD+M    ++P+ +T V +L AC+H GLVD GI+YF+SM  +YG+A KP+HY C+VD
Sbjct: 761  LDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIEYFESMNTEYGLAPKPEHYVCVVD 820

Query: 318  LLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAG 377
            +L RAG L  A D I +MP +P   ++ TLLSAC VHK +++ EFAA +L  L P ++A 
Sbjct: 821  MLTRAGLLSRAKDFILEMPIEPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSA- 879

Query: 378  CYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVS 437
             YV L+N+YA  +KWD     R  MKE  V K PG SWIEV   +H F  GD+ HP    
Sbjct: 880  TYVLLSNLYAVCRKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSFYVGDQNHPLADE 939

Query: 438  IHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIR 497
            IHE  K+L KR    GYV D    L  + +E K+  +  HSEKLAI+FGL+ +P   PI 
Sbjct: 940  IHEYFKDLTKRASEIGYVQDCFSLLSELQQEQKDPTIFIHSEKLAISFGLLSLPATMPIN 999

Query: 498  VFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
            V KNLRVC DCH   K++S +  REIIVRD  RFHHF+ G CSC DYW
Sbjct: 1000 VMKNLRVCNDCHDWIKFVSKVSNREIIVRDAYRFHHFEGGACSCKDYW 1047



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 90/321 (28%), Positives = 158/321 (49%), Gaps = 18/321 (5%)

Query: 20  RGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISG 79
           +G L  A ++FD++P+  + ++N M+   L +       F  F R+  ++        SG
Sbjct: 116 KGDLDGALKVFDEMPERTIFTWNKMIK-ELASRSLSGKVFCLFGRMVNENVTPNEGTFSG 174

Query: 80  FVQK----------KNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPV 129
            ++                AR ++  +  K+++  + +I  Y   G +D+A  +F    +
Sbjct: 175 VLEACRGGSVAFDVVEQIHARIIYQGLG-KSTIVCNPLIDLYSRNGFVDRARRVFDGLYL 233

Query: 130 KSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQ 189
           K   +W AMISG  K     N    + ++L   M  LGI P   + SSVL  C  + SL+
Sbjct: 234 KDHSSWVAMISGLSK-----NECEVEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLE 288

Query: 190 LGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYA 249
           +G+Q+H LV K     DT     L+S+Y   G L  A  +F  + ++D VT+N +I+G +
Sbjct: 289 IGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGSLISAEHIFSNMSQRDAVTYNTLINGLS 348

Query: 250 QHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKP 309
           Q G GEKA+ LF +M+ +G++PDS T  +L++AC+  G +  G Q   +     G A+  
Sbjct: 349 QCGYGEKAMELFKRMQLDGLEPDSNTLASLVVACSSDGTLFSG-QQLHAYTTKLGFASND 407

Query: 310 DHYTCMVDLLGRAGKLVEAVD 330
                +++L  +   +  A++
Sbjct: 408 KIEGALLNLYAKCSDIETALN 428



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 83/318 (26%), Positives = 144/318 (45%), Gaps = 19/318 (5%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK----DTASWNTM 76
           G L  A+ +F  + Q D V+YN +++  L        A + F+R+ +     D+ +  ++
Sbjct: 320 GSLISAEHIFSNMSQRDAVTYNTLING-LSQCGYGEKAMELFKRMQLDGLEPDSNTLASL 378

Query: 77  ISGFVQKKNMAKARDLF-----LAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKS 131
           +        +   + L      L     + +   A+++ Y +C  ++ A+  F    V++
Sbjct: 379 VVACSSDGTLFSGQQLHAYTTKLGFASNDKIE-GALLNLYAKCSDIETALNYFLETEVEN 437

Query: 132 VVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLG 191
           VV W  M+  Y     + NS+     ++ R M    I PN  +  S+L  C  L  L+LG
Sbjct: 438 VVLWNVMLVAYGLLDDLRNSF-----RIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELG 492

Query: 192 KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQH 251
           +Q+H  + K+    +    + LI MY K G L+ A  + +    KDVV+W  MI+GY Q+
Sbjct: 493 EQIHSQIIKTSFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQY 552

Query: 252 GKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGI-QYFDSMVNDYGIAAKPD 310
              +KAL  F +M D G++ D +     + AC  AGL  L   Q   +     G ++   
Sbjct: 553 NFDDKALTTFRQMLDRGIRSDEVGLTNAVSAC--AGLQALKEGQQIHAQACVSGFSSDLP 610

Query: 311 HYTCMVDLLGRAGKLVEA 328
               +V L  + G + EA
Sbjct: 611 FQNALVTLYSKCGNIEEA 628



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 90/353 (25%), Positives = 140/353 (39%), Gaps = 72/353 (20%)

Query: 149 ENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLS-SLQLGKQVHQLVFKSPLCKDT 207
           + S+ E+G+  +      GIRPN  +L  +L GC   + SL  G+++H  + K     + 
Sbjct: 47  DESFQENGIDSVE---NCGIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGFDNNA 103

Query: 208 TALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE 267
                L+  Y   GDL+ A K+F E+  + + TWN MI   A      K   LF +M +E
Sbjct: 104 CLSEKLLDFYLFKGDLDGALKVFDEMPERTIFTWNKMIKELASRSLSGKVFCLFGRMVNE 163

Query: 268 GMKPDSITFVALLLACN------------HA------------------------GLVDL 291
            + P+  TF  +L AC             HA                        G VD 
Sbjct: 164 NVTPNEGTFSGVLEACRGGSVAFDVVEQIHARIIYQGLGKSTIVCNPLIDLYSRNGFVDR 223

Query: 292 GIQYFDSMVNDYGIAAKPDH--YTCMVDLLGRAGKLVEAVDLIKKM---PFKPQPAIFGT 346
             + FD      G+  K DH  +  M+  L +    VEA+ L   M      P P  F +
Sbjct: 224 ARRVFD------GLYLK-DHSSWVAMISGLSKNECEVEAIRLFCDMYVLGIMPTPYAFSS 276

Query: 347 LLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYV--QLANIYAAMKKWDDVARIRLSMKE 404
           +LSAC+  + L++ E   ++   L    ++  YV   L ++Y  +        I  +M +
Sbjct: 277 VLSACKKIESLEIGE--QLHGLVLKLGFSSDTYVCNALVSLYFHLGSLISAEHIFSNMSQ 334

Query: 405 NNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPD 457
            + V           T+++                EK  EL KRM+L G  PD
Sbjct: 335 RDAVTY--------NTLINGLSQ--------CGYGEKAMELFKRMQLDGLEPD 371


>gi|225464281|ref|XP_002271266.1| PREDICTED: pentatricopeptide repeat-containing protein At3g16610
           [Vitis vinifera]
          Length = 785

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 221/529 (41%), Positives = 320/529 (60%), Gaps = 16/529 (3%)

Query: 26  AQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQK-- 83
           A+++FD +   + VS++ M+    + SD +  A + F ++ +KD      +  G V +  
Sbjct: 264 ARKIFDVMGVRNEVSWSAMIGG-YVASDCMKEALELFDQMILKDAMDPTPVTLGSVLRAC 322

Query: 84  ---KNMAKARDLFLAMPEKNSVS----WSAMISGYIECGQLDKAVELFKVAPVKSVVAWT 136
               ++++ R L   + +  SV      + ++S Y +CG +D A+  F     K  V+++
Sbjct: 323 AKLTDLSRGRKLHCYIIKLGSVLDILLGNTLLSMYAKCGVIDDAIRFFDEMNPKDSVSFS 382

Query: 137 AMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQ 196
           A++SG      V+N  A   L + RMM   GI P+ +++  VL  CSHL++LQ G   H 
Sbjct: 383 AIVSGC-----VQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHG 437

Query: 197 LVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEK 256
            +       DT     LI MY KCG +  A ++F  + R D+V+WNAMI GY  HG G +
Sbjct: 438 YLIVRGFATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGME 497

Query: 257 ALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMV 316
           AL LF  +   G+KPD ITF+ LL +C+H+GLV  G  +FD+M  D+ I  + +H  CMV
Sbjct: 498 ALGLFHDLLALGLKPDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHCICMV 557

Query: 317 DLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAA 376
           D+LGRAG + EA   I+ MPF+P   I+  LLSACR+HK ++L E  +  + +L P  + 
Sbjct: 558 DILGRAGLIDEAHHFIRNMPFEPDVRIWSALLSACRIHKNIELGEEVSKKIQSLGP-EST 616

Query: 377 GCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELV 436
           G +V L+NIY+A  +WDD A IR++ K+  + K+PG SWIE+  +VH F  GD+ H +L 
Sbjct: 617 GNFVLLSNIYSAAGRWDDAAHIRITQKDWGLKKIPGCSWIEINGIVHAFVGGDQSHLQLS 676

Query: 437 SIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPI 496
            I+ KL+EL   MK  GY  +  F    V EE KEQ+LL+HSEKLAIAFG++ +  G PI
Sbjct: 677 QINRKLEELLVEMKRLGYQAECSFVFQDVEEEEKEQILLYHSEKLAIAFGILNLKAGRPI 736

Query: 497 RVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
            V KNLRVCGDCH A K+++ I KREI VRD  RFHHFK+GTC+CGD+W
Sbjct: 737 LVTKNLRVCGDCHTAIKFMTLITKREITVRDANRFHHFKNGTCNCGDFW 785



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 102/398 (25%), Positives = 174/398 (43%), Gaps = 52/398 (13%)

Query: 64  RLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISG----YIECGQLDK 119
           R  +K+  ++  ++   +Q K++ +A+ +     +  S + S+++      Y+ C Q+  
Sbjct: 4   RFEVKN--NYLHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVL 61

Query: 120 AVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVL 179
           A  LF   P  SV+ W  +I  Y       N   +  + L   M+ LG+RPN  +   VL
Sbjct: 62  ARRLFDEIPNPSVILWNQIIRAY-----AWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVL 116

Query: 180 LGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVV 239
             CS L +++ G ++H       L  D    T L+  Y KCG L +A +LF  +  +DVV
Sbjct: 117 KACSGLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVV 176

Query: 240 TWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSM 299
            WNAMI+G + +G  + A++L  +M++EG+ P+S T V +L     A  +  G       
Sbjct: 177 AWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYC 236

Query: 300 VN---DYGIAAKP---DHYT---CMV------DLLGRAGK---------------LVEAV 329
           V    D G+       D Y    C++      D++G   +               + EA+
Sbjct: 237 VRRSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEAL 296

Query: 330 DLIKKMPFK----PQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYV--QLA 383
           +L  +M  K    P P   G++L AC   K  DL+    ++ + +   +     +   L 
Sbjct: 297 ELFDQMILKDAMDPTPVTLGSVLRACA--KLTDLSRGRKLHCYIIKLGSVLDILLGNTLL 354

Query: 384 NIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTV 421
           ++YA     DD  R    M   + V    +S I  G V
Sbjct: 355 SMYAKCGVIDDAIRFFDEMNPKDSVS---FSAIVSGCV 389



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 99/365 (27%), Positives = 162/365 (44%), Gaps = 33/365 (9%)

Query: 26  AQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRL------PIKDT-------AS 72
           A+ LFD+IP P V+ +N ++     N      A D +  +      P K T        S
Sbjct: 62  ARRLFDEIPNPSVILWNQIIRAYAWNGP-FDGAIDLYHSMLHLGVRPNKYTYPFVLKACS 120

Query: 73  WNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSV 132
               I   V+  + AK   L     E +    +A++  Y +CG L +A  LF     + V
Sbjct: 121 GLLAIEDGVEIHSHAKMFGL-----ESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDV 175

Query: 133 VAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGK 192
           VAW AMI+G   +G       +D ++L+  M   GI PN+S++  VL       +L  GK
Sbjct: 176 VAWNAMIAGCSLYGL-----CDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGK 230

Query: 193 QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHG 252
            +H    +          T L+ MY KC  L  A K+F  +  ++ V+W+AMI GY    
Sbjct: 231 ALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVASD 290

Query: 253 KGEKALRLFDKM-KDEGMKPDSITFVALLLACNHAGLVDLGI-QYFDSMVNDYGIAAKPD 310
             ++AL LFD+M   + M P  +T  ++L AC  A L DL   +     +   G      
Sbjct: 291 CMKEALELFDQMILKDAMDPTPVTLGSVLRAC--AKLTDLSRGRKLHCYIIKLGSVLDIL 348

Query: 311 HYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAI-FGTLLSAC--RVHKRLDLAEFAAMNL 367
               ++ +  + G + +A+    +M   P+ ++ F  ++S C    +  + L+ F  M L
Sbjct: 349 LGNTLLSMYAKCGVIDDAIRFFDEM--NPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQL 406

Query: 368 FNLNP 372
             ++P
Sbjct: 407 SGIDP 411


>gi|449460189|ref|XP_004147828.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Cucumis sativus]
          Length = 759

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 235/585 (40%), Positives = 337/585 (57%), Gaps = 52/585 (8%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  +  + W S++ G+AK  G L+ A+  FD++P+  VVS+N M S          A   
Sbjct: 187 MPARNIITWTSMVTGYAKM-GDLESARRYFDEMPERSVVSWNAMQSAYAQKECPKEALNL 245

Query: 61  FFQRLP---IKDTASWNTMISG--------------------------FVQKK------- 84
           F Q L      D  +W   IS                           FV+         
Sbjct: 246 FHQMLEEGITPDDTTWVVTISSCSSIGDPTLADSILRMIDQKHIVLNSFVKTALLDMHAK 305

Query: 85  --NMAKARDLFLAM-PEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISG 141
             N+  AR++F  +  ++N+V+W+ MIS Y   G+L  A ELF   P + VV+W +MI+G
Sbjct: 306 FGNLEIARNIFDELGSQRNAVTWNIMISAYTRVGKLSLARELFDNMPKRDVVSWNSMIAG 365

Query: 142 YMKFGYVENSWAEDGLKLLRMMIG-LGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK 200
           Y      +N  +   ++L + MI  + I+P+  +++SVL  C H+ +L+L   V  +V +
Sbjct: 366 Y-----AQNGESAMSIELFKEMISCMDIQPDEVTIASVLSACGHIGALKLSYWVLDIVRE 420

Query: 201 SPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRL 260
             +    +    LI MY KCG + DA ++F  +  +DVV++N +ISG+A +G G++A++L
Sbjct: 421 KNIKLGISGFNSLIFMYSKCGSVADAHRIFQTMGTRDVVSFNTLISGFAANGHGKEAIKL 480

Query: 261 FDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLG 320
              M++EG++PD +T++ +L AC+HAGL++ G   F S+      A   DHY CMVDLLG
Sbjct: 481 VLTMEEEGIEPDHVTYIGVLTACSHAGLLNEGKNVFKSIQ-----APTVDHYACMVDLLG 535

Query: 321 RAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYV 380
           RAG+L EA  LI+ MP KP   ++G+LL+A R+HKR+ L E AA  LF L P N  G YV
Sbjct: 536 RAGELDEAKMLIQSMPMKPHAGVYGSLLNASRIHKRVGLGELAASKLFELEPQNL-GNYV 594

Query: 381 QLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHE 440
            L+NIYA+  +W+DV R+R  MK+  + K  G SW+E    VH+F  GDR H +   I++
Sbjct: 595 LLSNIYASFGRWEDVKRVREMMKKGGLKKSVGMSWVEYKGQVHKFTVGDRSHEQSKDIYK 654

Query: 441 KLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFK 500
            L ELE++MK  G+V D   AL  V EE KE++L  HSEKLAI F L+   +GT IRV K
Sbjct: 655 LLAELERKMKRVGFVADKSCALRDVEEEEKEEMLGTHSEKLAICFALLISEVGTTIRVVK 714

Query: 501 NLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           NLR+C DCH A K IS +E REI+VRD  RFH F +G CSC DYW
Sbjct: 715 NLRICLDCHTAIKMISKLEGREIVVRDNNRFHCFSEGMCSCHDYW 759



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 88/326 (26%), Positives = 158/326 (48%), Gaps = 40/326 (12%)

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQL 117
           A + F+++  +  A WN+MISG  +  N  +A  LF  MP +N ++W++M++GY + G L
Sbjct: 149 ARNLFEQMAERTLADWNSMISGCWKSGNETEAVVLFNMMPARNIITWTSMVTGYAKMGDL 208

Query: 118 DKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSS 177
           + A   F   P +SVV+W AM S      Y +    ++ L L   M+  GI P+ ++   
Sbjct: 209 ESARRYFDEMPERSVVSWNAMQS-----AYAQKECPKEALNLFHQMLEEGITPDDTTWVV 263

Query: 178 VLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI--QR 235
            +  CS +    L   + +++ +  +  ++   T L+ M+ K G+LE A  +F E+  QR
Sbjct: 264 TISSCSSIGDPTLADSILRMIDQKHIVLNSFVKTALLDMHAKFGNLEIARNIFDELGSQR 323

Query: 236 ------------------------------KDVVTWNAMISGYAQHGKGEKALRLFDKMK 265
                                         +DVV+WN+MI+GYAQ+G+   ++ LF +M 
Sbjct: 324 NAVTWNIMISAYTRVGKLSLARELFDNMPKRDVVSWNSMIAGYAQNGESAMSIELFKEMI 383

Query: 266 D-EGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGK 324
               ++PD +T  ++L AC H G + L     D +V +  I      +  ++ +  + G 
Sbjct: 384 SCMDIQPDEVTIASVLSACGHIGALKLSYWVLD-IVREKNIKLGISGFNSLIFMYSKCGS 442

Query: 325 LVEAVDLIKKMPFKPQPAIFGTLLSA 350
           + +A  + + M  +   + F TL+S 
Sbjct: 443 VADAHRIFQTMGTRDVVS-FNTLISG 467


>gi|449476974|ref|XP_004154891.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Cucumis sativus]
          Length = 759

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 235/585 (40%), Positives = 337/585 (57%), Gaps = 52/585 (8%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  +  + W S++ G+AK  G L+ A+  FD++P+  VVS+N M S          A   
Sbjct: 187 MPARNIITWTSMVTGYAKM-GDLESARRYFDEMPERSVVSWNAMQSAYAQKECPKEALNL 245

Query: 61  FFQRLP---IKDTASWNTMISG--------------------------FVQKK------- 84
           F Q L      D  +W   IS                           FV+         
Sbjct: 246 FHQMLEEGITPDDTTWVVTISSCSSIGDPTLADSILRMIDQKHIVLNSFVKTALLDMHAK 305

Query: 85  --NMAKARDLFLAM-PEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISG 141
             N+  AR++F  +  ++N+V+W+ MIS Y   G+L  A ELF   P + VV+W +MI+G
Sbjct: 306 FGNLEIARNIFDELGSQRNAVTWNIMISAYTRVGKLSLARELFDNMPKRDVVSWNSMIAG 365

Query: 142 YMKFGYVENSWAEDGLKLLRMMIG-LGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK 200
           Y      +N  +   ++L + MI  + I+P+  +++SVL  C H+ +L+L   V  +V +
Sbjct: 366 Y-----AQNGESAMSIELFKEMISCMDIQPDEVTIASVLSACGHIGALKLSYWVLDIVRE 420

Query: 201 SPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRL 260
             +    +    LI MY KCG + DA ++F  +  +DVV++N +ISG+A +G G++A++L
Sbjct: 421 KNIKLGISGFNSLIFMYSKCGSVADAHRIFQTMGTRDVVSFNTLISGFAANGHGKEAIKL 480

Query: 261 FDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLG 320
              M++EG++PD +T++ +L AC+HAGL++ G   F S+      A   DHY CMVDLLG
Sbjct: 481 VLTMEEEGIEPDHVTYIGVLTACSHAGLLNEGKNVFKSIQ-----APTVDHYACMVDLLG 535

Query: 321 RAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYV 380
           RAG+L EA  LI+ MP KP   ++G+LL+A R+HKR+ L E AA  LF L P N  G YV
Sbjct: 536 RAGELDEAKMLIQSMPMKPHAGVYGSLLNASRIHKRVGLGELAASKLFELEPQNL-GNYV 594

Query: 381 QLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHE 440
            L+NIYA+  +W+DV R+R  MK+  + K  G SW+E    VH+F  GDR H +   I++
Sbjct: 595 LLSNIYASFGRWEDVKRVREMMKKGGLKKSVGMSWVEYKGQVHKFTVGDRSHEQSKDIYK 654

Query: 441 KLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFK 500
            L ELE++MK  G+V D   AL  V EE KE++L  HSEKLAI F L+   +GT IRV K
Sbjct: 655 LLAELERKMKRVGFVADKSCALRDVEEEEKEEMLGTHSEKLAICFALLISEVGTTIRVVK 714

Query: 501 NLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           NLR+C DCH A K IS +E REI+VRD  RFH F +G CSC DYW
Sbjct: 715 NLRICLDCHTAIKMISKLEGREIVVRDNNRFHCFSEGMCSCHDYW 759



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 88/326 (26%), Positives = 158/326 (48%), Gaps = 40/326 (12%)

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQL 117
           A + F+++  +  A WN+MISG  +  N  +A  LF  MP +N ++W++M++GY + G L
Sbjct: 149 ARNLFEQMAERTLADWNSMISGCWKSGNETEAVVLFNMMPARNIITWTSMVTGYAKMGDL 208

Query: 118 DKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSS 177
           + A   F   P +SVV+W AM S      Y +    ++ L L   M+  GI P+ ++   
Sbjct: 209 ESARRYFDEMPERSVVSWNAMQS-----AYAQKECPKEALNLFHQMLEEGITPDDTTWVV 263

Query: 178 VLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI--QR 235
            +  CS +    L   + +++ +  +  ++   T L+ M+ K G+LE A  +F E+  QR
Sbjct: 264 TISSCSSIGDPTLADSILRMIDQKHIVLNSFVKTALLDMHAKFGNLEIARNIFDELGSQR 323

Query: 236 ------------------------------KDVVTWNAMISGYAQHGKGEKALRLFDKMK 265
                                         +DVV+WN+MI+GYAQ+G+   ++ LF +M 
Sbjct: 324 NAVTWNIMISAYTRVGKLSLARELFDNMPKRDVVSWNSMIAGYAQNGESAMSIELFKEMI 383

Query: 266 D-EGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGK 324
               ++PD +T  ++L AC H G + L     D +V +  I      +  ++ +  + G 
Sbjct: 384 SCMDIQPDEVTIASVLSACGHIGALKLSYWVLD-IVREKNIKLGISGFNSLIFMYSKCGS 442

Query: 325 LVEAVDLIKKMPFKPQPAIFGTLLSA 350
           + +A  + + M  +   + F TL+S 
Sbjct: 443 VADAHRIFQTMGTRDVVS-FNTLISG 467


>gi|308080264|ref|NP_001183681.1| uncharacterized protein LOC100502275 [Zea mays]
 gi|238013832|gb|ACR37951.1| unknown [Zea mays]
 gi|413938826|gb|AFW73377.1| hypothetical protein ZEAMMB73_579690 [Zea mays]
          Length = 745

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 221/575 (38%), Positives = 324/575 (56%), Gaps = 46/575 (8%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
            S L G   + G + DA+ +FD++   +VV YN M++  LL    V  A   F+ +  +D
Sbjct: 178 GSPLVGMYAKMGLIGDAKRVFDEMDGKNVVMYNTMITG-LLRCKMVEEARRLFEVMTDRD 236

Query: 70  TASWNTMISGFVQKKNMAKARDLFLAMP-------------------------------- 97
             +W TM++GF Q    ++A + F  M                                 
Sbjct: 237 CITWTTMVTGFTQNGLESQALNFFRRMRFQGIAIDQYTFGSILTACGALSALEQGKQIHA 296

Query: 98  -------EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVEN 150
                  + N    SA++  Y +C  +  A   F+    K++++WTA+I      GY +N
Sbjct: 297 YIIRTHYDDNVFVGSALVDMYSKCRSIKPAETAFRRMSCKNIISWTALI-----VGYGQN 351

Query: 151 SWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTAL 210
             +E+ +++   M   GI P+  +L SV+  C++L+SL+ G Q H L   S L    T  
Sbjct: 352 GCSEEAVRVFSEMQRDGIDPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMHYITVS 411

Query: 211 TPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMK 270
             L+++Y KCG +EDA +LF E+   D V+W A+++GYAQ G+ ++ + LF+KM  + +K
Sbjct: 412 NALVTLYGKCGSIEDAHRLFDEMLFHDQVSWTALVTGYAQFGRAKETIDLFEKMLAKDVK 471

Query: 271 PDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVD 330
           PD +TF+ +L AC+ AG V+ G  YF SM  D+GI    DHYTCM+DL  R+G+L EA +
Sbjct: 472 PDGVTFIGVLSACSRAGFVEKGCSYFHSMQKDHGIVPIDDHYTCMIDLYSRSGRLKEAEE 531

Query: 331 LIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMK 390
            IK+MP  P    +GTLLSACR+   +++ ++AA NL  ++P N A  YV L +++A   
Sbjct: 532 FIKQMPMHPDAIGWGTLLSACRLRGDMEIGQWAAENLLEIDPQNPAS-YVLLCSMHATKG 590

Query: 391 KWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMK 450
            W+ VA++R  M++  V K PG SWI+    VH F + D+ HP    I+EKL+ L  +M 
Sbjct: 591 NWNQVAQLRRGMRDRQVKKEPGCSWIKYKNKVHIFSADDQSHPFSKGIYEKLEWLNSKML 650

Query: 451 LAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHR 510
             GY PD+   LH V +  K  ++  HSEKLAIAFGL+ VP   PIR+ KNLRVC DCH 
Sbjct: 651 EEGYKPDVSSVLHDVADTDKVHMVSHHSEKLAIAFGLMFVPHEMPIRIVKNLRVCVDCHN 710

Query: 511 ATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           ATK IS I  R+I+VRD  RFH F +G CSCGD+W
Sbjct: 711 ATKLISKITGRDILVRDAVRFHKFSNGVCSCGDFW 745



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 99/393 (25%), Positives = 179/393 (45%), Gaps = 48/393 (12%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKI------PQPDVVSYNIMLSCILLNSDD 54
           M  + TV++N+V+AGF+   G    A  L+  +       +P  ++ + M+       D 
Sbjct: 98  MAQRDTVSYNAVIAGFSGG-GAHARAVRLYHTLLRAGSSVRPSRITMSAMVMAASALGDR 156

Query: 55  VVAAFDFFQ--RLPIKDTASWNTMISGFVQKKNM-AKARDLFLAMPEKNSVSWSAMISGY 111
            +      Q  RL     A   + + G   K  +   A+ +F  M  KN V ++ MI+G 
Sbjct: 157 ALGRQFHCQILRLGFGVNAFVGSPLVGMYAKMGLIGDAKRVFDEMDGKNVVMYNTMITGL 216

Query: 112 IECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPN 171
           + C  +++A  LF+V   +  + WT M++     G+ +N      L   R M   GI  +
Sbjct: 217 LRCKMVEEARRLFEVMTDRDCITWTTMVT-----GFTQNGLESQALNFFRRMRFQGIAID 271

Query: 172 ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFL 231
             +  S+L  C  LS+L+ GKQ+H  + ++    +    + L+ MY KC  ++ A   F 
Sbjct: 272 QYTFGSILTACGALSALEQGKQIHAYIIRTHYDDNVFVGSALVDMYSKCRSIKPAETAFR 331

Query: 232 EIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDL 291
            +  K++++W A+I GY Q+G  E+A+R+F +M+ +G+ PD  T  +++ +C +   ++ 
Sbjct: 332 RMSCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDFTLGSVISSCANLASLEE 391

Query: 292 GIQYF---------------DSMVNDYGIAAKPD---------------HYTCMVDLLGR 321
           G Q+                +++V  YG     +                +T +V    +
Sbjct: 392 GAQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMLFHDQVSWTALVTGYAQ 451

Query: 322 AGKLVEAVDLIKKM---PFKPQPAIFGTLLSAC 351
            G+  E +DL +KM     KP    F  +LSAC
Sbjct: 452 FGRAKETIDLFEKMLAKDVKPDGVTFIGVLSAC 484



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 67/242 (27%), Positives = 119/242 (49%), Gaps = 14/242 (5%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVV 133
           N +++ + +    A+AR +F A P  N  +++A++S       LD    LF     +  V
Sbjct: 45  NHLLTAYGKAGRHARARRVFDATPHPNLFTYNALLSTLAHARLLDDMDSLFASMAQRDTV 104

Query: 134 AWTAMISGYMKFGYVENSWAEDGLKLLRMMI--GLGIRPNASSLSSVLLGCSHLSSLQLG 191
           ++ A+I+G+   G    +     ++L   ++  G  +RP+  ++S++++  S L    LG
Sbjct: 105 SYNAVIAGFSGGGAHARA-----VRLYHTLLRAGSSVRPSRITMSAMVMAASALGDRALG 159

Query: 192 KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQH 251
           +Q H  + +     +    +PL+ MY K G + DA ++F E+  K+VV +N MI+G  + 
Sbjct: 160 RQFHCQILRLGFGVNAFVGSPLVGMYAKMGLIGDAKRVFDEMDGKNVVMYNTMITGLLRC 219

Query: 252 GKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDH 311
              E+A RLF+ M D     D IT+  ++      GL    + +F  M    GIA   D 
Sbjct: 220 KMVEEARRLFEVMTDR----DCITWTTMVTGFTQNGLESQALNFFRRM-RFQGIAI--DQ 272

Query: 312 YT 313
           YT
Sbjct: 273 YT 274


>gi|356555170|ref|XP_003545909.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Glycine max]
          Length = 741

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 223/555 (40%), Positives = 324/555 (58%), Gaps = 20/555 (3%)

Query: 3   VKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCIL--------LNSDD 54
           VK  V+W S+ + +    G  +    +F ++    V   ++ LS IL        L S  
Sbjct: 195 VKDVVSWTSMSSCYVNC-GLPRLGLAVFCEMGWNGVKPNSVTLSSILPACSELKDLKSGR 253

Query: 55  VVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIEC 114
            +  F     + I++    + ++S + +  ++ +AR +F  MP ++ VSW+ +++ Y   
Sbjct: 254 AIHGFAVRHGM-IENVFVCSALVSLYARCLSVKQARLVFDLMPHRDVVSWNGVLTAYFTN 312

Query: 115 GQLDKAVELFKVAPVKSVVA----WTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRP 170
            + DK + LF     K V A    W A+I G M     EN   E  +++LR M  LG +P
Sbjct: 313 REYDKGLALFSQMSSKGVEADEATWNAVIGGCM-----ENGQTEKAVEMLRKMQNLGFKP 367

Query: 171 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 230
           N  ++SS L  CS L SL++GK+VH  VF+  L  D T +T L+ MY KCGDL  +  +F
Sbjct: 368 NQITISSFLPACSILESLRMGKEVHCYVFRHWLIGDLTTMTALVYMYAKCGDLNLSRNVF 427

Query: 231 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVD 290
             I RKDVV WN MI   A HG G + L LF+ M   G+KP+S+TF  +L  C+H+ LV+
Sbjct: 428 DMICRKDVVAWNTMIIANAMHGNGREVLLLFESMLQSGIKPNSVTFTGVLSGCSHSRLVE 487

Query: 291 LGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSA 350
            G+Q F+SM  D+ +    +HY CMVD+  RAG+L EA + I++MP +P  + +G LL A
Sbjct: 488 EGLQIFNSMGRDHLVEPDANHYACMVDVFSRAGRLHEAYEFIQRMPMEPTASAWGALLGA 547

Query: 351 CRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKM 410
           CRV+K ++LA+ +A  LF + P N  G YV L NI    K W + +  R+ MKE  + K 
Sbjct: 548 CRVYKNVELAKISANKLFEIEP-NNPGNYVSLFNILVTAKLWSEASEARILMKERGITKT 606

Query: 411 PGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVK 470
           PG SW++VG  VH F  GD+ + E   I+  L EL ++MK AGY PD ++ L  + +E K
Sbjct: 607 PGCSWLQVGDRVHTFVVGDKNNMESDKIYNFLDELGEKMKSAGYKPDTDYVLQDIDQEEK 666

Query: 471 EQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTR 530
            + L  HSEKLA+AFG++ +   + IRVFKNLR+CGDCH A KY+S +    IIVRD+ R
Sbjct: 667 AESLCSHSEKLAVAFGILNLNGQSSIRVFKNLRICGDCHNAIKYVSKVVGVTIIVRDSLR 726

Query: 531 FHHFKDGTCSCGDYW 545
           FHHF++G CSC D W
Sbjct: 727 FHHFRNGNCSCQDLW 741



 Score =  115 bits (287), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 77/300 (25%), Positives = 146/300 (48%), Gaps = 15/300 (5%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNS--DDVVAAFDFFQRLPIKDTAS-WNTMI 77
           G  + AQ+LFD IPQPD  + + ++S        ++ +  +   +   IK   S + T+ 
Sbjct: 80  GDFRRAQQLFDNIPQPDPTTCSTLISAFTTRGLPNEAIRLYASLRARGIKPHNSVFLTVA 139

Query: 78  SGFVQKKNMAKAR----DLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVV 133
                  + ++ +    D        ++   +A+I  Y +C  ++ A  +F    VK VV
Sbjct: 140 KACGASGDASRVKEVHDDAIRCGMMSDAFLGNALIHAYGKCKCVEGARRVFDDLVVKDVV 199

Query: 134 AWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ 193
           +WT+M S Y+  G         GL +   M   G++PN+ +LSS+L  CS L  L+ G+ 
Sbjct: 200 SWTSMSSCYVNCGL-----PRLGLAVFCEMGWNGVKPNSVTLSSILPACSELKDLKSGRA 254

Query: 194 VHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGK 253
           +H    +  + ++    + L+S+Y +C  ++ A  +F  +  +DVV+WN +++ Y  + +
Sbjct: 255 IHGFAVRHGMIENVFVCSALVSLYARCLSVKQARLVFDLMPHRDVVSWNGVLTAYFTNRE 314

Query: 254 GEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYT 313
            +K L LF +M  +G++ D  T+ A++  C   G  +  ++    M N   +  KP+  T
Sbjct: 315 YDKGLALFSQMSSKGVEADEATWNAVIGGCMENGQTEKAVEMLRKMQN---LGFKPNQIT 371



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 80/178 (44%), Gaps = 5/178 (2%)

Query: 107 MISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGL 166
           ++   +  G   +A +LF   P       + +IS +   G        + ++L   +   
Sbjct: 72  LLKAALNVGDFRRAQQLFDNIPQPDPTTCSTLISAFTTRGL-----PNEAIRLYASLRAR 126

Query: 167 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 226
           GI+P+ S   +V   C         K+VH    +  +  D      LI  Y KC  +E A
Sbjct: 127 GIKPHNSVFLTVAKACGASGDASRVKEVHDDAIRCGMMSDAFLGNALIHAYGKCKCVEGA 186

Query: 227 CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 284
            ++F ++  KDVV+W +M S Y   G     L +F +M   G+KP+S+T  ++L AC+
Sbjct: 187 RRVFDDLVVKDVVSWTSMSSCYVNCGLPRLGLAVFCEMGWNGVKPNSVTLSSILPACS 244


>gi|147790745|emb|CAN61464.1| hypothetical protein VITISV_005683 [Vitis vinifera]
          Length = 785

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 220/529 (41%), Positives = 319/529 (60%), Gaps = 16/529 (3%)

Query: 26  AQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQK-- 83
           A+++FD +   + VS++ M+    + SD +  A + F ++ +KD      +  G V +  
Sbjct: 264 ARKIFDVMGVRNEVSWSAMIGG-YVXSDCMKEALELFDQMILKDAMDPTPVTLGSVLRAC 322

Query: 84  ---KNMAKARDLFLAMPEKNSVS----WSAMISGYIECGQLDKAVELFKVAPVKSVVAWT 136
               ++++ R L   + +   V      + ++S Y +CG +D A+  F     K  V+++
Sbjct: 323 AKLTDLSRGRKLHCYIIKLGXVLDILLGNTLLSMYAKCGVIDDAIRFFDXMNPKDSVSFS 382

Query: 137 AMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQ 196
           A++SG      V+N  A   L + RMM   GI P+ +++  VL  CSHL++LQ G   H 
Sbjct: 383 AIVSGC-----VQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHG 437

Query: 197 LVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEK 256
            +       DT     LI MY KCG +  A ++F  + R D+V+WNAMI GY  HG G +
Sbjct: 438 YLIVRGFATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGME 497

Query: 257 ALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMV 316
           AL LF  +   G+KPD ITF+ LL +C+H+GLV  G  +FD+M  D+ I  + +H  CMV
Sbjct: 498 ALGLFHDLLALGLKPDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHCICMV 557

Query: 317 DLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAA 376
           D+LGRAG + EA   I+ MPF+P   I+  LLSACR+HK ++L E  +  + +L P  + 
Sbjct: 558 DILGRAGLIDEAHHFIRNMPFEPDVRIWSALLSACRIHKNIELGEEVSKKIQSLGP-EST 616

Query: 377 GCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELV 436
           G +V L+NIY+A  +WDD A IR++ K+  + K+PG SWIE+  +VH F  GD+ H +L 
Sbjct: 617 GNFVLLSNIYSAAGRWDDAAHIRITQKDWGLKKIPGCSWIEINGIVHAFVGGDQSHLQLS 676

Query: 437 SIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPI 496
            I+ KL+EL   MK  GY  +  F    V EE KEQ+LL+HSEKLAIAFG++ +  G PI
Sbjct: 677 QINRKLEELLVEMKRLGYQAECSFVFQDVEEEEKEQILLYHSEKLAIAFGILNLKAGRPI 736

Query: 497 RVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
            V KNLRVCGDCH A K+++ I KREI VRD  RFHHFK+GTC+CGD+W
Sbjct: 737 LVTKNLRVCGDCHAAIKFMTVITKREITVRDANRFHHFKNGTCNCGDFW 785



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 82/315 (26%), Positives = 144/315 (45%), Gaps = 45/315 (14%)

Query: 76  MISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISG----YIECGQLDKAVELFKVAPVKS 131
           ++   +Q K++ +A+ +     +  S + S+++      Y+ C Q+  A  LF   P  S
Sbjct: 14  LLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPS 73

Query: 132 VVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLG 191
           V+ W  +I  Y   G  + +     + L   M+ LG+RPN  +   VL  CS L +++ G
Sbjct: 74  VILWNQIIRAYAWNGPFDGA-----IDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDG 128

Query: 192 KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQH 251
            ++H       L  D    T L+  Y KCG L +A +LF  +  +DVV WNAMI+G + +
Sbjct: 129 VEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLY 188

Query: 252 GKGEKALRLFDKMKDEGMKPDSITFVALLLACNHA------------------------- 286
           G  + A++L  +M++EG+ P+S T V +L     A                         
Sbjct: 189 GLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVG 248

Query: 287 -GLVDL-----GIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK-- 338
            GL+D+      + Y   + +  G+  +   ++ M+     +  + EA++L  +M  K  
Sbjct: 249 TGLLDMYAKCQCLLYARKIFDVMGVRNEVS-WSAMIGGYVXSDCMKEALELFDQMILKDA 307

Query: 339 --PQPAIFGTLLSAC 351
             P P   G++L AC
Sbjct: 308 MDPTPVTLGSVLRAC 322



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 99/365 (27%), Positives = 161/365 (44%), Gaps = 33/365 (9%)

Query: 26  AQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRL------PIKDT-------AS 72
           A+ LFD+IP P V+ +N ++     N      A D +  +      P K T        S
Sbjct: 62  ARRLFDEIPNPSVILWNQIIRAYAWNGP-FDGAIDLYHSMLHLGVRPNKYTYPFVLKACS 120

Query: 73  WNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSV 132
               I   V+  + AK   L     E +    +A++  Y +CG L +A  LF     + V
Sbjct: 121 GLLAIEDGVEIHSHAKMFGL-----ESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDV 175

Query: 133 VAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGK 192
           VAW AMI+G   +G       +D ++L+  M   GI PN+S++  VL       +L  GK
Sbjct: 176 VAWNAMIAGCSLYGL-----CDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGK 230

Query: 193 QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHG 252
            +H    +          T L+ MY KC  L  A K+F  +  ++ V+W+AMI GY    
Sbjct: 231 ALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVXSD 290

Query: 253 KGEKALRLFDKM-KDEGMKPDSITFVALLLACNHAGLVDLGI-QYFDSMVNDYGIAAKPD 310
             ++AL LFD+M   + M P  +T  ++L AC  A L DL   +     +   G      
Sbjct: 291 CMKEALELFDQMILKDAMDPTPVTLGSVLRAC--AKLTDLSRGRKLHCYIIKLGXVLDIL 348

Query: 311 HYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAI-FGTLLSAC--RVHKRLDLAEFAAMNL 367
               ++ +  + G + +A+     M   P+ ++ F  ++S C    +  + L+ F  M L
Sbjct: 349 LGNTLLSMYAKCGVIDDAIRFFDXM--NPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQL 406

Query: 368 FNLNP 372
             ++P
Sbjct: 407 SGIDP 411



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 87/181 (48%), Gaps = 2/181 (1%)

Query: 178 VLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKD 237
           +L  C    SL   K++HQ   K+    D++ L  L  +Y  C  +  A +LF EI    
Sbjct: 14  LLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPS 73

Query: 238 VVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFD 297
           V+ WN +I  YA +G  + A+ L+  M   G++P+  T+  +L AC+    ++ G++   
Sbjct: 74  VILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVE-IH 132

Query: 298 SMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRL 357
           S    +G+ +     T +VD   + G LVEA  L   M  +   A +  +++ C ++   
Sbjct: 133 SHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVA-WNAMIAGCSLYGLC 191

Query: 358 D 358
           D
Sbjct: 192 D 192


>gi|326490792|dbj|BAJ90063.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 754

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 226/577 (39%), Positives = 335/577 (58%), Gaps = 47/577 (8%)

Query: 8   NWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPI 67
            W+ ++  +AK  G + DA+ +FD++   +VV YN M++  LL    V  A   F+ +  
Sbjct: 186 TWSPLVDMYAKM-GLIGDAKRVFDEMVVKNVVMYNTMITG-LLRCKMVEEARGVFEAMVD 243

Query: 68  KDTASWNTMISGFVQKKNMAKARDLF------------------------LAMPEK---- 99
           +D+ +W TM++G  Q    ++A D+F                        LA  E+    
Sbjct: 244 RDSITWTTMVTGLTQNGLQSEALDVFRRMRAEGVGIDQYTFGSILTACGALAASEEGKQI 303

Query: 100 -----------NSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYV 148
                      N    SA++  Y +C  +  A  +F+    K++++WTAMI      GY 
Sbjct: 304 HAYTIRTLYDGNIFVGSALVDMYSKCRSIRLAEAVFRRMTCKNIISWTAMI-----VGYG 358

Query: 149 ENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTT 208
           +N   E+ +++   M   GI+PN  +L SV+  C++L+SL+ G Q H +   S L    T
Sbjct: 359 QNGCGEEAVRVFSEMQTDGIKPNDFTLGSVISSCANLASLEEGAQFHCMALVSGLRPYIT 418

Query: 209 ALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEG 268
             + L+++Y KCG +EDA +LF E+   D V++ A++SGYAQ GK ++ + LF+KM  +G
Sbjct: 419 VSSALVTLYGKCGSIEDAHRLFDEMPFHDQVSYTALVSGYAQFGKAKETIDLFEKMLLKG 478

Query: 269 MKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEA 328
           +KP+ +TF+ +L AC+ +GLV+ G  YF SM  D+GI    DHYTCM+DL  R+G+L EA
Sbjct: 479 VKPNGVTFIGVLSACSRSGLVEKGCSYFHSMQQDHGIVLLDDHYTCMIDLYSRSGRLKEA 538

Query: 329 VDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAA 388
            + I++MP  P    + TLLSACR+   +++ ++AA NL   +P N A  YV L +++A+
Sbjct: 539 EEFIRQMPRCPDAIGWATLLSACRLRGDMEIGKWAAENLLKTDPQNPAS-YVLLCSMHAS 597

Query: 389 MKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKR 448
             +W +VA +R  M++  V K PG SWI+    VH F + D+ HP   +I+EKL+ L  +
Sbjct: 598 KGEWSEVALLRRGMRDRQVKKEPGCSWIKYKNRVHIFSADDQSHPFSGTIYEKLQWLNSK 657

Query: 449 MKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDC 508
           M   GY PD+   LH V +  K  +L  HSEKLAIAFGLI VP   PIRV KNLRVC DC
Sbjct: 658 MAEEGYKPDVSSVLHDVADAEKVHMLSNHSEKLAIAFGLIFVPEEMPIRVVKNLRVCVDC 717

Query: 509 HRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           H ATK+IS I  R+I+VRD  RFH F +G CSCGD+W
Sbjct: 718 HNATKFISKITGRDILVRDAVRFHKFSNGICSCGDFW 754



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 95/404 (23%), Positives = 169/404 (41%), Gaps = 77/404 (19%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD-FFQRLPIK 68
           N +L  +A+  G+L  A+ LFD +P P++ + N +LS   L    ++   D  F  +P +
Sbjct: 49  NHLLTAYARS-GRLPLARRLFDAMPDPNLFTRNALLSA--LAHARLLPDMDRLFASMPQR 105

Query: 69  DTASWNTMISGF----------------------VQKKNMAKARDLFLAMPEKNSVSWSA 106
           D  S+N +I+GF                      V    +  +R     M    S     
Sbjct: 106 DAVSYNALIAGFSGAGAPARAAGAYRALLREEAVVDGARVRPSRITMSGMVMAASALGDR 165

Query: 107 MISGYIEC------------------------GQLDKAVELFKVAPVKSVVAWTAMISGY 142
            +   + C                        G +  A  +F    VK+VV +  MI+G 
Sbjct: 166 ALGRQVHCQIMRLGFGAYAFTWSPLVDMYAKMGLIGDAKRVFDEMVVKNVVMYNTMITGL 225

Query: 143 MK--------------------------FGYVENSWAEDGLKLLRMMIGLGIRPNASSLS 176
           ++                           G  +N    + L + R M   G+  +  +  
Sbjct: 226 LRCKMVEEARGVFEAMVDRDSITWTTMVTGLTQNGLQSEALDVFRRMRAEGVGIDQYTFG 285

Query: 177 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK 236
           S+L  C  L++ + GKQ+H    ++    +    + L+ MY KC  +  A  +F  +  K
Sbjct: 286 SILTACGALAASEEGKQIHAYTIRTLYDGNIFVGSALVDMYSKCRSIRLAEAVFRRMTCK 345

Query: 237 DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYF 296
           ++++W AMI GY Q+G GE+A+R+F +M+ +G+KP+  T  +++ +C +   ++ G Q F
Sbjct: 346 NIISWTAMIVGYGQNGCGEEAVRVFSEMQTDGIKPNDFTLGSVISSCANLASLEEGAQ-F 404

Query: 297 DSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQ 340
             M    G+       + +V L G+ G + +A  L  +MPF  Q
Sbjct: 405 HCMALVSGLRPYITVSSALVTLYGKCGSIEDAHRLFDEMPFHDQ 448


>gi|15227067|ref|NP_178398.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546779|sp|Q8LK93.2|PP145_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g02980
 gi|3461822|gb|AAC32916.1| hypothetical protein [Arabidopsis thaliana]
 gi|330250557|gb|AEC05651.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 603

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 222/528 (42%), Positives = 311/528 (58%), Gaps = 14/528 (2%)

Query: 26  AQELFDKIPQPDVVSYNIMLS--CILLNSDDVVAAF-DFFQRLPIKDTASWNTMISGFVQ 82
           A+ LF+ + +PD+V +N M        N  +V + F +  +   + D  ++ +++     
Sbjct: 82  ARHLFEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLLKACAV 141

Query: 83  KKNMAKARDLF-LAMP---EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAM 138
            K + + R L  L+M    + N      +I+ Y EC  +D A  +F       VV + AM
Sbjct: 142 AKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARCVFDRIVEPCVVCYNAM 201

Query: 139 ISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLV 198
           I+GY +      +   + L L R M G  ++PN  +L SVL  C+ L SL LGK +H+  
Sbjct: 202 ITGYAR-----RNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKWIHKYA 256

Query: 199 FKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKAL 258
            K   CK     T LI M+ KCG L+DA  +F +++ KD   W+AMI  YA HGK EK++
Sbjct: 257 KKHSFCKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKSM 316

Query: 259 RLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDL 318
            +F++M+ E ++PD ITF+ LL AC+H G V+ G +YF  MV+ +GI     HY  MVDL
Sbjct: 317 LMFERMRSENVQPDEITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKHYGSMVDL 376

Query: 319 LGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGC 378
           L RAG L +A + I K+P  P P ++  LL+AC  H  LDLAE  +  +F L+ ++  G 
Sbjct: 377 LSRAGNLEDAYEFIDKLPISPTPMLWRILLAACSSHNNLDLAEKVSERIFELDDSH-GGD 435

Query: 379 YVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSI 438
           YV L+N+YA  KKW+ V  +R  MK+   VK+PG S IEV  VVHEF SGD V      +
Sbjct: 436 YVILSNLYARNKKWEYVDSLRKVMKDRKAVKVPGCSSIEVNNVVHEFFSGDGVKSATTKL 495

Query: 439 HEKLKELEKRMKLAGYVPDLEFALHA-VGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIR 497
           H  L E+ K +KL+GYVPD    +HA + ++ KE  L +HSEKLAI FGL+  P GT IR
Sbjct: 496 HRALDEMVKELKLSGYVPDTSMVVHANMNDQEKEITLRYHSEKLAITFGLLNTPPGTTIR 555

Query: 498 VFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           V KNLRVC DCH A K IS I  R++++RD  RFHHF+DG CSCGD+W
Sbjct: 556 VVKNLRVCRDCHNAAKLISLIFGRKVVLRDVQRFHHFEDGKCSCGDFW 603


>gi|357138408|ref|XP_003570784.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Brachypodium distachyon]
          Length = 750

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 223/564 (39%), Positives = 324/564 (57%), Gaps = 46/564 (8%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G + DA+ +FD++   +VV  N M++  LL    V  A   F+ +  +D+ +W TM++G 
Sbjct: 194 GPIGDARRVFDEMEGKNVVMCNTMITG-LLRCKMVAEARALFEAIEERDSITWTTMVTGL 252

Query: 81  VQKKNMAKARDLFLAMP---------------------------------------EKNS 101
            Q    ++A D+F  M                                        E N 
Sbjct: 253 TQNGLESEALDVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTCYEDNV 312

Query: 102 VSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLR 161
              SA++  Y +C  +  A  +F+    K++++WTAMI      GY +N   E+ +++  
Sbjct: 313 FVGSALVDMYSKCRSVRLAEAVFRRMMWKNIISWTAMI-----VGYGQNGCGEEAVRVFS 367

Query: 162 MMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCG 221
            M   GI+P+  +L SV+  C++L+SL+ G Q H L   S L    T    L+++Y KCG
Sbjct: 368 EMQRDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLRPYVTVSNALVTLYGKCG 427

Query: 222 DLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLL 281
            +EDA +LF E+   D V+W A++ GYAQ GK ++ + LF+KM  +G+KPD +TF+ +L 
Sbjct: 428 SIEDAHRLFDEMSFHDQVSWTALVMGYAQFGKAKETIDLFEKMLSKGVKPDGVTFIGVLS 487

Query: 282 ACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQP 341
           AC+ +GLVD G  YF SM  D+ I    DHYTCM+DL  R+G L +A + IK+MP  P  
Sbjct: 488 ACSRSGLVDKGRSYFHSMQQDHDIVPLDDHYTCMIDLYSRSGWLKQAEEFIKQMPRCPDA 547

Query: 342 AIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLS 401
             + TLLSACR+   +++ ++AA NL  L+P N A  YV L +++A+  +W+DVA++R  
Sbjct: 548 FGWATLLSACRLRGDMEIGKWAAENLLKLDPQNPAS-YVLLCSMHASKGEWNDVAKLRRG 606

Query: 402 MKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFA 461
           M++  V K PG SWI+    VH F + D+ HP   +I+EKL+ L  +M   GY PD+   
Sbjct: 607 MRDRQVKKEPGCSWIKYKNKVHIFSADDQSHPFSRTIYEKLQWLNSKMVEEGYKPDVSSV 666

Query: 462 LHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKR 521
           LH V +  K  +L  HSEKLAIAFGLI VP   PIR+ KNLRVC DCH ATK+IS I  R
Sbjct: 667 LHDVADAEKVHMLSHHSEKLAIAFGLIFVPPEMPIRIVKNLRVCVDCHNATKFISKITGR 726

Query: 522 EIIVRDTTRFHHFKDGTCSCGDYW 545
           +I+VRD  RFH F +G CSCGD+W
Sbjct: 727 DILVRDAVRFHKFSNGICSCGDFW 750



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 98/380 (25%), Positives = 173/380 (45%), Gaps = 47/380 (12%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  +  V  NS+L+  A+  G ++D + LF  +PQ D VSYN +L+          AA  
Sbjct: 72  MPGRNLVTGNSLLSALARA-GLVRDMERLFTSLPQRDAVSYNALLAGFSRAGAHARAAGA 130

Query: 61  FFQRL-------PIKDTASWNTMISGFVQKKNMAK------------------------- 88
           +   L       P + T S   M++  +  + + +                         
Sbjct: 131 YVALLRDEAGVRPSRITMSGVVMVASALGDRALGRQVHCQILRLGFGAYAFTGSPLVDMY 190

Query: 89  --------ARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMIS 140
                   AR +F  M  KN V  + MI+G + C  + +A  LF+    +  + WT M++
Sbjct: 191 AKVGPIGDARRVFDEMEGKNVVMCNTMITGLLRCKMVAEARALFEAIEERDSITWTTMVT 250

Query: 141 GYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK 200
                G  +N    + L + R M   G+  +  +  S+L  C  L++L+ GKQ+H  + +
Sbjct: 251 -----GLTQNGLESEALDVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITR 305

Query: 201 SPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRL 260
           +    +    + L+ MY KC  +  A  +F  +  K++++W AMI GY Q+G GE+A+R+
Sbjct: 306 TCYEDNVFVGSALVDMYSKCRSVRLAEAVFRRMMWKNIISWTAMIVGYGQNGCGEEAVRV 365

Query: 261 FDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLG 320
           F +M+ +G+KPD  T  +++ +C +   ++ G Q F  +    G+         +V L G
Sbjct: 366 FSEMQRDGIKPDDFTLGSVISSCANLASLEEGAQ-FHCLALVSGLRPYVTVSNALVTLYG 424

Query: 321 RAGKLVEAVDLIKKMPFKPQ 340
           + G + +A  L  +M F  Q
Sbjct: 425 KCGSIEDAHRLFDEMSFHDQ 444



 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 68/252 (26%), Positives = 116/252 (46%), Gaps = 34/252 (13%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVV 133
           NT+++ +     +  AR +F AMP +N V+ ++++S     G +     LF   P +  V
Sbjct: 50  NTLLTAYASSGLLPHARRVFDAMPGRNLVTGNSLLSALARAGLVRDMERLFTSLPQRDAV 109

Query: 134 AWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ 193
           ++ A+++G+          A   + LLR   G  +RP+  ++S V++  S L    LG+Q
Sbjct: 110 SYNALLAGF-SRAGAHARAAGAYVALLRDEAG--VRPSRITMSGVVMVASALGDRALGRQ 166

Query: 194 VHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA------------------------CK- 228
           VH  + +          +PL+ MY K G + DA                        CK 
Sbjct: 167 VHCQILRLGFGAYAFTGSPLVDMYAKVGPIGDARRVFDEMEGKNVVMCNTMITGLLRCKM 226

Query: 229 ------LFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA 282
                 LF  I+ +D +TW  M++G  Q+G   +AL +F +M+ EG+  D  TF ++L A
Sbjct: 227 VAEARALFEAIEERDSITWTTMVTGLTQNGLESEALDVFRRMRAEGVGIDQYTFGSILTA 286

Query: 283 CNHAGLVDLGIQ 294
           C     ++ G Q
Sbjct: 287 CGALAALEEGKQ 298


>gi|225425668|ref|XP_002269694.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
           [Vitis vinifera]
 gi|296086362|emb|CBI31951.3| unnamed protein product [Vitis vinifera]
          Length = 595

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 225/532 (42%), Positives = 309/532 (58%), Gaps = 16/532 (3%)

Query: 23  LKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK----DTASWNTMIS 78
           ++ A  LFD+IPQPD+V +N M       +D  + AF  F ++       D  ++ +++ 
Sbjct: 71  MQHAHHLFDQIPQPDIVLFNTMARG-YARTDTPLRAFTLFTQILFSGLFPDDYTFPSLLK 129

Query: 79  GFVQKKNMAKARDLF-LAMP---EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVA 134
                K + + R L  LA+     +N      +I+ Y  C ++D A  +F       VV 
Sbjct: 130 ACASCKALEEGRQLHCLAIKLGLSENVYVCPTLINMYTACNEMDCARRVFDKIWEPCVVT 189

Query: 135 WTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQV 194
           + AMI+GY +      S   + L L R +    ++P   ++ SVL  C+ L +L LGK +
Sbjct: 190 YNAMITGYAR-----GSRPNEALSLFRELQARNLKPTDVTMLSVLSSCALLGALDLGKWM 244

Query: 195 HQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKG 254
           H+ V K+   +     T LI MY KCG L+DA  +F  +  +D   W+AMI  YA HG G
Sbjct: 245 HEYVKKNGFNRFVKVDTALIDMYAKCGSLDDAVCVFENMAVRDTQAWSAMIMAYAIHGHG 304

Query: 255 EKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTC 314
            KA+ LF +M+  G +PD ITF+ LL AC+H GLV+ G +YF  M + YG+     HY C
Sbjct: 305 LKAVSLFKEMRKAGTEPDEITFLGLLYACSHTGLVEEGFEYFYGMRDKYGVIPGIKHYGC 364

Query: 315 MVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPAN 374
           MVDLLGRAG+L EA + I  +P +P P ++ TLLSAC  H  ++L +     +F L+ ++
Sbjct: 365 MVDLLGRAGRLEEAYEFIVGLPIRPTPILWRTLLSACGSHGNVELGKRVIEQIFELDDSH 424

Query: 375 AAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPE 434
             G Y+ L+N+ A   +W+DV  +R  M E  VVK+PG S +EV  VVHEF SGD VH  
Sbjct: 425 -GGDYIILSNLCARAGRWEDVNYVRKLMNERGVVKIPGCSSVEVNNVVHEFFSGDGVHSV 483

Query: 435 LVSIHEKLKELEKRMKLAGYVPDLEFALHA-VGEEVKEQLLLFHSEKLAIAFGLIKVPLG 493
              +H+ L EL K +KL GYVP+     HA + +E KE  L +HSEKLAI FGL+  P G
Sbjct: 484 STKLHQALDELVKELKLVGYVPNTSLVFHADMEDEEKEVTLRYHSEKLAITFGLLNTPPG 543

Query: 494 TPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           T IRV KNLRVCGDCH A K IS I  R+II+RD  RFHHFKDG CSC DYW
Sbjct: 544 TTIRVVKNLRVCGDCHSAAKLISLIFDRQIILRDVQRFHHFKDGKCSCEDYW 595


>gi|334185563|ref|NP_188975.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274454|sp|Q9LW63.1|PP251_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g23330
 gi|11994318|dbj|BAB02277.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643232|gb|AEE76753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 715

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 212/545 (38%), Positives = 324/545 (59%), Gaps = 31/545 (5%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  K  V++N+++AG+A Q G  +DA  +  ++   D+   +  LS +L    + V    
Sbjct: 202 MPRKDVVSYNTIIAGYA-QSGMYEDALRMVREMGTTDLKPDSFTLSSVLPIFSEYVDVIK 260

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
                           I G+V +K +    D+++          S+++  Y +  +++ +
Sbjct: 261 -------------GKEIHGYVIRKGIDS--DVYIG---------SSLVDMYAKSARIEDS 296

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLL 180
             +F     +  ++W ++++GY     V+N    + L+L R M+   ++P A + SSV+ 
Sbjct: 297 ERVFSRLYCRDGISWNSLVAGY-----VQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIP 351

Query: 181 GCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVT 240
            C+HL++L LGKQ+H  V +     +    + L+ MY KCG+++ A K+F  +   D V+
Sbjct: 352 ACAHLATLHLGKQLHGYVLRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVS 411

Query: 241 WNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV 300
           W A+I G+A HG G +A+ LF++MK +G+KP+ + FVA+L AC+H GLVD    YF+SM 
Sbjct: 412 WTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMT 471

Query: 301 NDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLA 360
             YG+  + +HY  + DLLGRAGKL EA + I KM  +P  +++ TLLS+C VHK L+LA
Sbjct: 472 KVYGLNQELEHYAAVADLLGRAGKLEEAYNFISKMCVEPTGSVWSTLLSSCSVHKNLELA 531

Query: 361 EFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGT 420
           E  A  +F ++  N  G YV + N+YA+  +W ++A++RL M++  + K P  SWIE+  
Sbjct: 532 EKVAEKIFTVDSEN-MGAYVLMCNMYASNGRWKEMAKLRLRMRKKGLRKKPACSWIEMKN 590

Query: 421 VVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEK 480
             H F SGDR HP +  I+E LK + ++M+  GYV D    LH V EE K +LL  HSE+
Sbjct: 591 KTHGFVSGDRSHPSMDKINEFLKAVMEQMEKEGYVADTSGVLHDVDEEHKRELLFGHSER 650

Query: 481 LAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCS 540
           LA+AFG+I    GT IRV KN+R+C DCH A K+IS I +REIIVRD +RFHHF  G CS
Sbjct: 651 LAVAFGIINTEPGTTIRVTKNIRICTDCHVAIKFISKITEREIIVRDNSRFHHFNRGNCS 710

Query: 541 CGDYW 545
           CGDYW
Sbjct: 711 CGDYW 715



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 95/398 (23%), Positives = 159/398 (39%), Gaps = 84/398 (21%)

Query: 75  TMISGFVQKKNMAKARDL---FLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKS 131
           T+I    + K+ ++A+ L   F+     +  S S +IS Y     L +A+ LFK      
Sbjct: 10  TLIKNPTRIKSKSQAKQLHAQFIRTQSLSHTSASIVISIYTNLKLLHEALLLFKTLKSPP 69

Query: 132 VVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLG 191
           V+AW ++I  +      + S     L     M   G  P+ +   SVL  C+ +  L+ G
Sbjct: 70  VLAWKSVIRCF-----TDQSLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFG 124

Query: 192 KQVHQLVFKSPLCKDTTALTPLISMYCK-----------------------CGD------ 222
           + VH  + +  +  D      L++MY K                        GD      
Sbjct: 125 ESVHGFIVRLGMDCDLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDVKAE 184

Query: 223 -------LEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSIT 275
                  ++   ++F  + RKDVV++N +I+GYAQ G  E ALR+  +M    +KPDS T
Sbjct: 185 TCIMPFGIDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFT 244

Query: 276 FVALLLACN-----------HAGLVDLGIQ---YF-DSMVNDYGIAAKPD---------- 310
             ++L   +           H  ++  GI    Y   S+V+ Y  +A+ +          
Sbjct: 245 LSSVLPIFSEYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLY 304

Query: 311 -----HYTCMVDLLGRAGKLVEAVDLIKKM---PFKPQPAIFGTLLSAC----RVHKRLD 358
                 +  +V    + G+  EA+ L ++M     KP    F +++ AC     +H    
Sbjct: 305 CRDGISWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQ 364

Query: 359 LAEFAAMNLFNLNPANAAGC---YVQLANIYAAMKKWD 393
           L  +     F  N   A+     Y +  NI AA K +D
Sbjct: 365 LHGYVLRGGFGSNIFIASALVDMYSKCGNIKAARKIFD 402


>gi|62320270|dbj|BAD94552.1| hypothetical protein [Arabidopsis thaliana]
          Length = 694

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 211/545 (38%), Positives = 335/545 (61%), Gaps = 17/545 (3%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPD--VVSYNIMLSCILLNSD--DVVAAFDFFQRL 65
           N ++A +AK R +L  A+ +F+ +P P+  +VS+  ++S    N +  + +  F   +++
Sbjct: 158 NGLIALYAKCR-RLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSHMRKM 216

Query: 66  PIK-DTASWNTMISGFVQKKNMAKARDLFLAMPEKN-SVSWSAMIS---GYIECGQLDKA 120
            +K D  +  ++++ F   +++ + R +  ++ +    +    +IS    Y +CGQ+  A
Sbjct: 217 DVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATA 276

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLL 180
             LF      +++ W AMISGY K GY     A + + +   MI   +RP+  S++S + 
Sbjct: 277 KILFDKMKSPNLILWNAMISGYAKNGY-----AREAIDMFHEMINKDVRPDTISITSAIS 331

Query: 181 GCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVT 240
            C+ + SL+  + +++ V +S    D    + LI M+ KCG +E A  +F     +DVV 
Sbjct: 332 ACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVV 391

Query: 241 WNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV 300
           W+AMI GY  HG+  +A+ L+  M+  G+ P+ +TF+ LL+ACNH+G+V  G  +F+ M 
Sbjct: 392 WSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWWFFNLMA 451

Query: 301 NDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLA 360
            D+ I  +  HY C++DLLGRAG L +A ++IK MP +P   ++G LLSAC+ H+ ++L 
Sbjct: 452 -DHKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHVELG 510

Query: 361 EFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGT 420
           E+AA  LF+++P+N  G YVQL+N+YAA + WD VA +R+ MKE  + K  G SW+EV  
Sbjct: 511 EYAAQQLFSIDPSNT-GHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVEVRG 569

Query: 421 VVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEK 480
            +  FR GD+ HP    I  +++ +E R+K  G+V + + +LH + +E  E+ L  HSE+
Sbjct: 570 RLEAFRVGDKSHPRYEEIERQVEWIESRLKEGGFVANKDASLHDLNDEEAEETLCSHSER 629

Query: 481 LAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCS 540
           +AIA+GLI  P GTP+R+ KNLR C +CH ATK IS +  REI+VRDT RFHHFKDG CS
Sbjct: 630 IAIAYGLISTPQGTPLRITKNLRACVNCHAATKLISKLVDREIVVRDTNRFHHFKDGVCS 689

Query: 541 CGDYW 545
           CGDYW
Sbjct: 690 CGDYW 694



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 80/348 (22%), Positives = 173/348 (49%), Gaps = 22/348 (6%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNS--DDVVAAFDFFQRLPIK-DTASWNTMI 77
           G +  A+++FD +P+P +  +N ++     N+   D +  +   Q   +  D+ ++  ++
Sbjct: 67  GDITFARQVFDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLL 126

Query: 78  SGFVQKKNMAKAR----DLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPV--KS 131
                  ++   R     +F    + +    + +I+ Y +C +L  A  +F+  P+  ++
Sbjct: 127 KACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERT 186

Query: 132 VVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLG 191
           +V+WTA++S      Y +N    + L++   M  + ++P+  +L SVL   + L  L+ G
Sbjct: 187 IVSWTAIVS-----AYAQNGEPMEALEIFSHMRKMDVKPDWVALVSVLNAFTCLQDLKQG 241

Query: 192 KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQH 251
           + +H  V K  L  +   L  L +MY KCG +  A  LF +++  +++ WNAMISGYA++
Sbjct: 242 RSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKN 301

Query: 252 GKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSM-VNDYGIAAKPD 310
           G   +A+ +F +M ++ ++PD+I+  + + AC   G ++     ++ +  +DY    + D
Sbjct: 302 GYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDY----RDD 357

Query: 311 HY--TCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKR 356
            +  + ++D+  + G  VE   L+          ++  ++    +H R
Sbjct: 358 VFISSALIDMFAKCGS-VEGARLVFDRTLDRDVVVWSAMIVGYGLHGR 404



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 57/257 (22%), Positives = 107/257 (41%), Gaps = 41/257 (15%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M     + WN++++G+AK  G  ++A ++F ++   DV                      
Sbjct: 283 MKSPNLILWNAMISGYAKN-GYAREAIDMFHEMINKDVR--------------------- 320

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVS----WSAMISGYIECGQ 116
                   DT S  + IS   Q  ++ +AR ++  +   +        SA+I  + +CG 
Sbjct: 321 -------PDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGS 373

Query: 117 LDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLS 176
           ++ A  +F     + VV W+AMI GY   G      A + + L R M   G+ PN  +  
Sbjct: 374 VEGARLVFDRTLDRDVVVWSAMIVGYGLHGR-----AREAISLYRAMERGGVHPNDVTFL 428

Query: 177 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF--LEIQ 234
            +L+ C+H   ++ G     L+    +         +I +  + G L+ A ++   + +Q
Sbjct: 429 GLLMACNHSGMVREGWWFFNLMADHKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQ 488

Query: 235 RKDVVTWNAMISGYAQH 251
              V  W A++S   +H
Sbjct: 489 -PGVTVWGALLSACKKH 504



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 81/171 (47%), Gaps = 5/171 (2%)

Query: 173 SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLE 232
           S  +S++   +H + L   KQ+H  +    L      +T LI      GD+  A ++F +
Sbjct: 22  SFYASLIDSATHKAQL---KQIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDD 78

Query: 233 IQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 292
           + R  +  WNA+I GY+++   + AL ++  M+   + PDS TF  LL AC+    + +G
Sbjct: 79  LPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMG 138

Query: 293 IQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAI 343
            ++  + V   G  A       ++ L  +  +L  A  + + +P  P+  I
Sbjct: 139 -RFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPL-PERTI 187


>gi|357165485|ref|XP_003580399.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 886

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 212/550 (38%), Positives = 329/550 (59%), Gaps = 26/550 (4%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCIL---LNSDDVVAAFD 60
           + +V+W  ++ GF  Q G   ++ ELF+++    +      L+ ++    N+ D+     
Sbjct: 355 RNSVSWTVLIGGFL-QYGCFSESVELFNQMRAELMAVDQFALATLISGCCNTMDICLGSQ 413

Query: 61  F----FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQ 116
                 +    +     N++IS + +  N+  A  +F  M E++ VSW+ MI+ Y + G 
Sbjct: 414 LHSLCLKSGHTRAVVVSNSLISMYAKCGNLQNAELIFNFMAERDIVSWTGMITAYSQVGN 473

Query: 117 LDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLR-MMIGLGIRPNASSL 175
           + KA E F     ++V+ W AM+  Y++ G       EDGLK+   M+    + P+  + 
Sbjct: 474 IAKAREFFDDMSTRNVITWNAMLGAYIQHGA-----EEDGLKMYSDMLTEKDVIPDWVTY 528

Query: 176 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR 235
            ++  GC+ + + +LG Q+     K  L  DT+ +  +I+MY KCG + +A K F  + R
Sbjct: 529 VTLFRGCADIGANKLGDQIIGHTVKVGLILDTSVVNAVITMYSKCGRISEARKAFDFLSR 588

Query: 236 KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQY 295
           KD+V+WNAMI+GY+QHG G++A+ +FD + ++G KPD I++VA+L  C+H+GLV+ G  Y
Sbjct: 589 KDLVSWNAMITGYSQHGMGKQAIEIFDDILNKGAKPDYISYVAVLSGCSHSGLVEEGKFY 648

Query: 296 FDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHK 355
           FD M  D+ I+   +H++CMVDLLGRAG L+EA +LI +MP KP   ++G LLSAC+ H 
Sbjct: 649 FDMMKRDHNISPGLEHFSCMVDLLGRAGHLIEAKNLIDEMPMKPTAEVWGALLSACKTHG 708

Query: 356 RLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSW 415
             DLAE AA +LF+L+   + G Y+ LA +YA   K DD A++R  M++  + K PGYSW
Sbjct: 709 NNDLAELAAKHLFDLDSPGSGG-YMLLAKMYADAGKSDDSAQVRKLMRDKGIKKSPGYSW 767

Query: 416 IEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLL 475
           +EV   VH F++ D  HP++++I EKL EL +++   GYV           E  + +  +
Sbjct: 768 MEVNNRVHVFKAEDVSHPQVIAIREKLDELMEKIAHLGYVRT---------ESPRSE--I 816

Query: 476 FHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFK 535
            HSEKLA+AFG++ +P   PI + KNLR+C DCH   K IS +  RE ++RD  RFHHFK
Sbjct: 817 HHSEKLAVAFGIMSLPAWMPIHIMKNLRICDDCHTVIKLISTVTDREFVIRDGVRFHHFK 876

Query: 536 DGTCSCGDYW 545
            G+CSC DYW
Sbjct: 877 GGSCSCMDYW 886



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 89/346 (25%), Positives = 160/346 (46%), Gaps = 78/346 (22%)

Query: 21  GKLKDAQELF-DKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISG 79
           G L DA+ L  D+I +P+V+++NIM++        +  A + F R+P +D ASWNT++SG
Sbjct: 74  GALSDARNLLRDEITEPNVITHNIMMNG-YAKLGSLSDAVELFGRMPTRDVASWNTIMSG 132

Query: 80  FVQKKNMAKARDLFLAMPEK-----------------NSVSW------------------ 104
           + Q      A D+F++M +                   ++ W                  
Sbjct: 133 YYQSGQFLNALDIFVSMRQTGDSLPNAFTFGCVMKSCGALGWHEVALQLLGLLSKFDSQD 192

Query: 105 -----SAMISGYIECGQLDKA-------------------------------VELFKVAP 128
                +A++   + CG +D A                               +E+FK  P
Sbjct: 193 DPDVQTALVDMLVRCGAMDFASKQFSRIKNPTIICRNSMLVGYAKSHGVDHALEIFKSMP 252

Query: 129 VKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSL 188
            + VV+W  +IS   K G V      + L ++  M G G+RP++++ +S L  C+ LSSL
Sbjct: 253 ERDVVSWNMVISALSKSGRV-----REALDMVVDMHGKGVRPDSTTYTSSLTACARLSSL 307

Query: 189 QLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGY 248
           + GKQ+H  V ++    D    + ++ +Y KCG  ++A ++F  ++ ++ V+W  +I G+
Sbjct: 308 EWGKQLHVQVIRNLPHIDPYVASAMVELYAKCGCFKEAKRVFSSLRDRNSVSWTVLIGGF 367

Query: 249 AQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ 294
            Q+G   +++ LF++M+ E M  D      L+  C +   + LG Q
Sbjct: 368 LQYGCFSESVELFNQMRAELMAVDQFALATLISGCCNTMDICLGSQ 413



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 75/288 (26%), Positives = 128/288 (44%), Gaps = 39/288 (13%)

Query: 74  NTMISGFVQKKNMAKARDLFL-AMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSV 132
           NT++  ++    ++ AR+L    + E N ++ + M++GY + G L  AVELF   P + V
Sbjct: 64  NTLLHAYLSCGALSDARNLLRDEITEPNVITHNIMMNGYAKLGSLSDAVELFGRMPTRDV 123

Query: 133 VAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIR-PNASSLSSVLLGCSHLSSLQLG 191
            +W  ++SGY + G   N+     L +   M   G   PNA +   V+  C  L   ++ 
Sbjct: 124 ASWNTIMSGYYQSGQFLNA-----LDIFVSMRQTGDSLPNAFTFGCVMKSCGALGWHEVA 178

Query: 192 KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ----------------- 234
            Q+  L+ K     D    T L+ M  +CG ++ A K F  I+                 
Sbjct: 179 LQLLGLLSKFDSQDDPDVQTALVDMLVRCGAMDFASKQFSRIKNPTIICRNSMLVGYAKS 238

Query: 235 --------------RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 280
                          +DVV+WN +IS  ++ G+  +AL +   M  +G++PDS T+ + L
Sbjct: 239 HGVDHALEIFKSMPERDVVSWNMVISALSKSGRVREALDMVVDMHGKGVRPDSTTYTSSL 298

Query: 281 LACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEA 328
            AC     ++ G Q    ++ +      P   + MV+L  + G   EA
Sbjct: 299 TACARLSSLEWGKQLHVQVIRNLP-HIDPYVASAMVELYAKCGCFKEA 345



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 66/283 (23%), Positives = 119/283 (42%), Gaps = 65/283 (22%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELF-----DKIPQPDVVSY-NIMLSCILLNSD- 53
           M+ +  + WN++L  +  Q G  +D  +++     +K   PD V+Y  +   C  + ++ 
Sbjct: 484 MSTRNVITWNAMLGAYI-QHGAEEDGLKMYSDMLTEKDVIPDWVTYVTLFRGCADIGANK 542

Query: 54  --DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGY 111
             D +        L I DT+  N +I+ + +   +++AR  F  +  K+ VSW+AMI+GY
Sbjct: 543 LGDQIIGHTVKVGL-ILDTSVVNAVITMYSKCGRISEARKAFDFLSRKDLVSWNAMITGY 601

Query: 112 IECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPN 171
            + G   +A+E+F                             +D       ++  G +P+
Sbjct: 602 SQHGMGKQAIEIF-----------------------------DD-------ILNKGAKPD 625

Query: 172 ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTP-------LISMYCKCGDLE 224
             S  +VL GCSH   ++ GK      F   + K    ++P       ++ +  + G L 
Sbjct: 626 YISYVAVLSGCSHSGLVEEGK------FYFDMMKRDHNISPGLEHFSCMVDLLGRAGHLI 679

Query: 225 DACKLFLEIQRKDVV-TWNAMISGYAQHGKGE----KALRLFD 262
           +A  L  E+  K     W A++S    HG  +     A  LFD
Sbjct: 680 EAKNLIDEMPMKPTAEVWGALLSACKTHGNNDLAELAAKHLFD 722


>gi|225440839|ref|XP_002276333.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 705

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 233/622 (37%), Positives = 335/622 (53%), Gaps = 84/622 (13%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQ----PDVVSY-NIMLSCILLNS--- 52
           M  +  V W  ++ G+A + GK  ++  LF+K+ +    PD V+   ++ +C  L +   
Sbjct: 91  MQERDLVTWTVMIGGYA-ECGKANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHK 149

Query: 53  ----DDVV--------------------------AAFDFFQRLPIKDTASWNTMISGFVQ 82
               DD +                          +A + F R+  K+  SW+ MI+ +  
Sbjct: 150 ARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGY 209

Query: 83  KKNMAKARDLFLAM------PEKNSVS--------------------------------- 103
                KA DLF  M      P+K +++                                 
Sbjct: 210 HGQGRKALDLFRMMLSSGMLPDKITLASLLYACSDLKNLQMGRLIHHIVYKFGLDLDHFV 269

Query: 104 WSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMM 163
            +A++  Y +C +++ A  LF   P + +V WT MI GY + G      A + L L   M
Sbjct: 270 CAALVDMYGKCREIEDARFLFDKMPERDLVTWTVMIGGYAECGN-----ANESLVLFDKM 324

Query: 164 IGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDL 223
              G+ P+  ++ +V+  C+ L ++   + +   + +     D    T +I M+ KCG +
Sbjct: 325 REEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCV 384

Query: 224 EDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC 283
           E A ++F  ++ K+V++W+AMI+ Y  HG+G KAL LF  M   G+ P+ IT V+LL AC
Sbjct: 385 ESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYAC 444

Query: 284 NHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAI 343
           +HAGLV+ G+++F  M  DY + A   HYTC+VDLLGRAG+L EA+ LI+ M  +    +
Sbjct: 445 SHAGLVEEGLRFFSLMWEDYSVRADVKHYTCVVDLLGRAGRLDEALKLIESMTVEKDEGL 504

Query: 344 FGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMK 403
           +G  L ACR HK + LAE AA +L  L P N  G Y+ L+NIYA   +W+DVA+ R  M 
Sbjct: 505 WGAFLGACRTHKDVVLAEKAATSLLELQPQNP-GHYILLSNIYANAGRWEDVAKTRDLMS 563

Query: 404 ENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALH 463
           +  + K+PG++WIEV    H+F  GD  HP    I+E LK L  +++L GYVPD  F LH
Sbjct: 564 QRRLKKIPGWTWIEVDNKSHQFSVGDTTHPRSKEIYEMLKSLGNKLELVGYVPDTNFVLH 623

Query: 464 AVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREI 523
            V EE+K  +L  HSEKLAIAFGLI  P  TPIR+ KNLRVCGDCH   K +SAI  R I
Sbjct: 624 DVDEELKIGILYSHSEKLAIAFGLIATPEHTPIRIIKNLRVCGDCHTFCKLVSAITGRVI 683

Query: 524 IVRDTTRFHHFKDGTCSCGDYW 545
           IVRD  RFHHFK+G CSCGDYW
Sbjct: 684 IVRDANRFHHFKEGACSCGDYW 705



 Score =  158 bits (400), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 105/334 (31%), Positives = 178/334 (53%), Gaps = 33/334 (9%)

Query: 22  KLKDAQELFDKIPQPDVVSYNIML----SCILLNSDDVVAAFDFFQRLP----IKDTASW 73
           +++DA+ LFDK+ + D+V++ +M+     C   N   V+     F+++     + D  + 
Sbjct: 80  EIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVL-----FEKMREEGVVPDKVAM 134

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISGYIECGQLDKAVELFKVAPV 129
            T++    +   M KAR +   +  K    + +  +AMI  Y +CG ++ A E+F     
Sbjct: 135 VTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEE 194

Query: 130 KSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQ 189
           K+V++W+AMI+ Y   GY  +      L L RMM+  G+ P+  +L+S+L  CS L +LQ
Sbjct: 195 KNVISWSAMIAAY---GY--HGQGRKALDLFRMMLSSGMLPDKITLASLLYACSDLKNLQ 249

Query: 190 LGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYA 249
           +G+ +H +V+K  L  D      L+ MY KC ++EDA  LF ++  +D+VTW  MI GYA
Sbjct: 250 MGRLIHHIVYKFGLDLDHFVCAALVDMYGKCREIEDARFLFDKMPERDLVTWTVMIGGYA 309

Query: 250 QHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKP 309
           + G   ++L LFDKM++EG+ PD +  V ++ AC       LG  +    ++DY I  K 
Sbjct: 310 ECGNANESLVLFDKMREEGVVPDKVAMVTVVFAC-----AKLGAMHKARTIDDY-IQRKK 363

Query: 310 DHY-----TCMVDLLGRAGKLVEAVDLIKKMPFK 338
                   T M+D+  + G +  A ++  +M  K
Sbjct: 364 FQLDVILGTAMIDMHAKCGCVESAREIFDRMEEK 397



 Score =  131 bits (329), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 74/234 (31%), Positives = 126/234 (53%), Gaps = 10/234 (4%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI 164
           +A++  Y++C +++ A  LF     + +V WT MI GY + G      A + L L   M 
Sbjct: 69  AALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGK-----ANESLVLFEKMR 123

Query: 165 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 224
             G+ P+  ++ +V+  C+ L ++   + +   + +     D    T +I MY KCG +E
Sbjct: 124 EEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVE 183

Query: 225 DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 284
            A ++F  ++ K+V++W+AMI+ Y  HG+G KAL LF  M   GM PD IT  +LL AC+
Sbjct: 184 SAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYACS 243

Query: 285 HAGLVDLGIQYFDSMVNDYGIAAKPDHYTC--MVDLLGRAGKLVEAVDLIKKMP 336
               + +G +    +V  +G+    DH+ C  +VD+ G+  ++ +A  L  KMP
Sbjct: 244 DLKNLQMG-RLIHHIVYKFGL--DLDHFVCAALVDMYGKCREIEDARFLFDKMP 294



 Score =  118 bits (295), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 69/206 (33%), Positives = 110/206 (53%), Gaps = 16/206 (7%)

Query: 138 MISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQL 197
           M+ G+ K G   N +        R +I  G RP+  +L  V+  C  L +LQ+G+ +H +
Sbjct: 1   MVGGFAKVGDYINCFGT-----FRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHI 55

Query: 198 VFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKA 257
           V+K  L  D      L+ MY KC ++EDA  LF ++Q +D+VTW  MI GYA+ GK  ++
Sbjct: 56  VYKFGLDLDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANES 115

Query: 258 LRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY----- 312
           L LF+KM++EG+ PD +  V ++ AC       LG  +   +++DY I  K         
Sbjct: 116 LVLFEKMREEGVVPDKVAMVTVVFAC-----AKLGAMHKARIIDDY-IQRKKFQLDVILG 169

Query: 313 TCMVDLLGRAGKLVEAVDLIKKMPFK 338
           T M+D+  + G +  A ++  +M  K
Sbjct: 170 TAMIDMYAKCGCVESAREIFDRMEEK 195


>gi|449508565|ref|XP_004163348.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g23330-like [Cucumis
           sativus]
          Length = 712

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 216/548 (39%), Positives = 323/548 (58%), Gaps = 37/548 (6%)

Query: 1   MNVKTTVNWNSVLAGFAKQ---RGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVA 57
           M  K  V+WN+++AG A+       L+  +E+     +PD  + + +L  I  N D    
Sbjct: 199 MPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSFTLSSVLPLIAENVD---- 254

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQL 117
                         S    I G   ++ +    D+++A         S++I  Y +C ++
Sbjct: 255 -------------ISRGKEIHGCSIRQGLDA--DIYVA---------SSLIDMYAKCTRV 290

Query: 118 DKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSS 177
             +  +F +   +  ++W ++I+G      V+N   ++GL+  R M+   I+P + S SS
Sbjct: 291 ADSCRVFTLLTERDGISWNSIIAGC-----VQNGLFDEGLRFFRQMLMAKIKPKSYSFSS 345

Query: 178 VLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKD 237
           ++  C+HL++L LGKQ+H  + ++   ++    + L+ MY KCG++  A ++F  ++ +D
Sbjct: 346 IMPACAHLTTLHLGKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRD 405

Query: 238 VVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFD 297
           +V+W AMI G A HG+   A+ LF++M+ EG+KP+ + F+A+L AC+H GLVD   +YF+
Sbjct: 406 MVSWTAMIMGCALHGQAPDAIELFEQMETEGIKPNHVAFMAVLTACSHGGLVDEAWKYFN 465

Query: 298 SMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRL 357
           SM  D+GIA   +HY  + DLLGRAG+L EA D I  M   P  +I+ TLLSACRVH  +
Sbjct: 466 SMTRDFGIAPGVEHYAAVSDLLGRAGRLEEAYDFICGMHIGPTGSIWATLLSACRVHXNI 525

Query: 358 DLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIE 417
           D+AE  A  +  ++P N  G Y+ LANIY+A ++W + A+ R SM+   + K P  SWIE
Sbjct: 526 DMAEKVANRILEVDP-NNTGAYILLANIYSAARRWKEAAKWRASMRRIGIRKTPACSWIE 584

Query: 418 VGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFH 477
           V   V+ F +GD  HP    I E ++ L + M+  GYVPD     H V EE K+ L+  H
Sbjct: 585 VKNKVYAFMAGDESHPCYEKIREAMEVLVELMEKEGYVPDTSEVHHDVEEEQKKYLVCSH 644

Query: 478 SEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDG 537
           SE+LAI FG+I  P G  IRV KNLRVC DCH ATK+IS I  REI+VRD +RFHHFK+G
Sbjct: 645 SERLAIVFGIINTPAGMTIRVTKNLRVCTDCHTATKFISKIVGREIVVRDNSRFHHFKNG 704

Query: 538 TCSCGDYW 545
           TCSCGDYW
Sbjct: 705 TCSCGDYW 712



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 69/261 (26%), Positives = 131/261 (50%), Gaps = 9/261 (3%)

Query: 118 DKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSS 177
           D   ++F++ P K +V+W  +I+G  +     N   E+ L+++R M G  ++P++ +LSS
Sbjct: 190 DSVRKIFEMMPEKDLVSWNTIIAGNAR-----NGLYEETLRMIREMGGANLKPDSFTLSS 244

Query: 178 VLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKD 237
           VL   +    +  GK++H    +  L  D    + LI MY KC  + D+C++F  +  +D
Sbjct: 245 VLPLIAENVDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTLLTERD 304

Query: 238 VVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFD 297
            ++WN++I+G  Q+G  ++ LR F +M    +KP S +F +++ AC H   + LG Q   
Sbjct: 305 GISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQ-LH 363

Query: 298 SMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRL 357
             +   G        + +VD+  + G +  A  +  +M  +   + +  ++  C +H + 
Sbjct: 364 GYITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMVS-WTAMIMGCALHGQA 422

Query: 358 -DLAE-FAAMNLFNLNPANAA 376
            D  E F  M    + P + A
Sbjct: 423 PDAIELFEQMETEGIKPNHVA 443



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 81/362 (22%), Positives = 139/362 (38%), Gaps = 80/362 (22%)

Query: 111 YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRP 170
           Y     L  ++ LF        +AW ++I  Y   G    S     L     M+  G+ P
Sbjct: 50  YSHINLLHDSLRLFNTIHFPPALAWKSVIRCYTSHGLPHQS-----LGSFIGMLASGLYP 104

Query: 171 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC--- 227
           + +   SVL  C+ L  L LG+ +H  + +  L  D      L++MY K   LE++    
Sbjct: 105 DHNVFPSVLKSCALLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQR 164

Query: 228 -----------------------------KLFLEIQRKDVVTWNAMISGYAQHGKGEKAL 258
                                        K+F  +  KD+V+WN +I+G A++G  E+ L
Sbjct: 165 LGAGEVFDEMTERTRSVRTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETL 224

Query: 259 RLFDKMKDEGMKPDSITFVALL---------------LACNHAGLVDLGIQYFDSMVNDY 303
           R+  +M    +KPDS T  ++L                 C+    +D  I    S+++ Y
Sbjct: 225 RMIREMGGANLKPDSFTLSSVLPLIAENVDISRGKEIHGCSIRQGLDADIYVASSLIDMY 284

Query: 304 G----IAAKPDHYTCMVDLLG-----------RAGKLVEAVDLIKKM---PFKPQPAIFG 345
                +A     +T + +  G           + G   E +   ++M     KP+   F 
Sbjct: 285 AKCTRVADSCRVFTLLTERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFS 344

Query: 346 TLLSAC----RVHKRLDLAEFAAMNLFNLN---PANAAGCYVQLANIYAAMKKWDDVARI 398
           +++ AC     +H    L  +   N F+ N    ++    Y +  NI  A + +D   R+
Sbjct: 345 SIMPACAHLTTLHLGKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFD---RM 401

Query: 399 RL 400
           RL
Sbjct: 402 RL 403



 Score = 40.0 bits (92), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 2/78 (2%)

Query: 216 MYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSIT 275
           +Y     L D+ +LF  I     + W ++I  Y  HG   ++L  F  M   G+ PD   
Sbjct: 49  IYSHINLLHDSLRLFNTIHFPPALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNV 108

Query: 276 FVALLLACNHAGLVDLGI 293
           F ++L +C  A L+DL +
Sbjct: 109 FPSVLKSC--ALLMDLNL 124


>gi|359475985|ref|XP_002281998.2| PREDICTED: pentatricopeptide repeat-containing protein At4g33170
            [Vitis vinifera]
          Length = 1580

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 200/441 (45%), Positives = 280/441 (63%), Gaps = 6/441 (1%)

Query: 105  SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI 164
            S ++  YI+CG +  A  +F        VAWT+MISG      V+N   +  L++   M 
Sbjct: 1146 SGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGC-----VDNGNEDQALRIYHRMR 1200

Query: 165  GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 224
               + P+  + ++++   S +++L+ G+Q+H  V K     D    T L+ MY KCG++E
Sbjct: 1201 QSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVGTSLVDMYAKCGNIE 1260

Query: 225  DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 284
            DA +LF ++  +++  WNAM+ G AQHG  E+A+ LF  MK  G++PD ++F+ +L AC+
Sbjct: 1261 DAYRLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACS 1320

Query: 285  HAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIF 344
            HAGL     +Y  SM NDYGI  + +HY+C+VD LGRAG + EA  +I+ MPFK   +I 
Sbjct: 1321 HAGLTSEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAGLVQEADKVIETMPFKASASIN 1380

Query: 345  GTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKE 404
              LL ACR+   ++  +  A  LF L P ++A  YV L+NIYAA  +WDDV   R  MK 
Sbjct: 1381 RALLGACRIQGDVETGKRVAARLFALEPFDSA-AYVLLSNIYAAANRWDDVTDARKMMKR 1439

Query: 405  NNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHA 464
             NV K PG+SWI+V  ++H F   DR HP+   I++K++E+ K ++  GYVPD EF L  
Sbjct: 1440 KNVKKDPGFSWIDVKNMLHLFVVDDRSHPQADIIYDKVEEMMKTIREDGYVPDTEFVLLD 1499

Query: 465  VGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREII 524
            V +E KE+ L +HSEKLAIA+GLI  P  T IRV KNLRVCGDCH A KYIS + +REI+
Sbjct: 1500 VEDEEKERSLYYHSEKLAIAYGLISTPASTTIRVIKNLRVCGDCHNAIKYISKVFEREIV 1559

Query: 525  VRDTTRFHHFKDGTCSCGDYW 545
            +RD  RFHHF+DG CSCGDYW
Sbjct: 1560 LRDANRFHHFRDGVCSCGDYW 1580



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 88/352 (25%), Positives = 164/352 (46%), Gaps = 21/352 (5%)

Query: 26   AQELFDKIPQPDVVSYNIMLSCIL---LNSDDVVAAFDFFQRLPIKDTASWNTMI---SG 79
            A+E+F+ +   D++S+N M+S      L  + V    D        D  +  +++   S 
Sbjct: 958  AREVFNDMKHLDLISWNSMISSCAQSSLEEESVNLFIDLLHEGLKPDHFTLASVLRACSS 1017

Query: 80   FVQKKNMAKARDLFLAMPEKN---SVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWT 136
             +   N+++   +  A+   N   S   + +I  Y + G++++A  LF+      +  W 
Sbjct: 1018 LIDGLNISRQIHVH-ALKTGNIADSFVATTLIDVYSKSGKMEEAEFLFQNKDDLDLACWN 1076

Query: 137  AMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQ 196
            AM+     FGY+  +  +  L+L  ++   G + +  +L++    C  L  L  GKQ+H 
Sbjct: 1077 AMM-----FGYIIGNDGKKALELFSLIHKSGEKSDQITLATAAKACGCLVLLDQGKQIHA 1131

Query: 197  LVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEK 256
               K+    D    + ++ MY KCGD+ +A  +F  I   D V W +MISG   +G  ++
Sbjct: 1132 HAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQ 1191

Query: 257  ALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMV 316
            ALR++ +M+   + PD  TF  L+ A +    ++ G Q   +++      + P   T +V
Sbjct: 1192 ALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIK-LDCVSDPFVGTSLV 1250

Query: 317  DLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLF 368
            D+  + G + +A  L KKM  +   A++  +L     H   +     A+NLF
Sbjct: 1251 DMYAKCGNIEDAYRLFKKMNVR-NIALWNAMLVGLAQHGNAE----EAVNLF 1297



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 99/382 (25%), Positives = 169/382 (44%), Gaps = 63/382 (16%)

Query: 4    KTTVNWNSVLAGFA----KQRGKLKDAQELFDKIPQPDVVSYNIMLSCIL---LNSDDVV 56
            +  V WN++L  +A       G  ++   LF  +      +  + L+ +L   LNS  + 
Sbjct: 685  RDLVTWNAILGAYAASVDSNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSGCLW 744

Query: 57   AAFDFFQRLPIKDTASWNTMISG-----FVQKKNMAKARDLFLAMPEKNSVSWSAMISGY 111
            AA +      IK    W+  +SG     + +   M  AR LF  M E++ V W+ M+ GY
Sbjct: 745  AA-EGVHGYAIKIGLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGY 803

Query: 112  IECGQLDKAVELFK------VAPVKSVVAWTAMISGYMKFGYVENSWAED---------- 155
            ++ G   +A +LF       + P +  V    +++G  +  + E  W  D          
Sbjct: 804  VQLGLEKEAFQLFSEFHRSGLRPDEFSV--QLILNGVSEVNWDEGKWLADQVQAYAAKLS 861

Query: 156  --------------------------GLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQ 189
                                       ++    M GL I  +A +L  VL   +    L+
Sbjct: 862  LSDDNPDVFCWNKKLSECLWAGDNWGAIECFVNMNGLNIDYDAVTLLVVLAAVAGTDDLE 921

Query: 190  LGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYA 249
            LGKQVH +  KS L  D +    L++MY K G    A ++F +++  D+++WN+MIS  A
Sbjct: 922  LGKQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCA 981

Query: 250  QHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSM-VNDYGIAAK 308
            Q    E+++ LF  +  EG+KPD  T  ++L AC  + L+D G+     + V+       
Sbjct: 982  QSSLEEESVNLFIDLLHEGLKPDHFTLASVLRAC--SSLID-GLNISRQIHVHALKTGNI 1038

Query: 309  PDHY--TCMVDLLGRAGKLVEA 328
             D +  T ++D+  ++GK+ EA
Sbjct: 1039 ADSFVATTLIDVYSKSGKMEEA 1060



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 87/174 (50%)

Query: 107 MISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGL 166
           +++ Y +CG L  A ++F   P + +V W A++  Y       +  A++GL L R++   
Sbjct: 662 LLTMYSKCGSLSSARQVFDTTPERDLVTWNAILGAYAASVDSNDGNAQEGLHLFRLLRAS 721

Query: 167 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 226
                  +L+ VL  C +   L   + VH    K  L  D      L+++Y KCG + DA
Sbjct: 722 LGSTTRMTLAPVLKLCLNSGCLWAAEGVHGYAIKIGLEWDVFVSGALVNIYSKCGRMRDA 781

Query: 227 CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 280
             LF  ++ +DVV WN M+ GY Q G  ++A +LF +    G++PD  +   +L
Sbjct: 782 RLLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQLFSEFHRSGLRPDEFSVQLIL 835



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 50/106 (47%), Gaps = 5/106 (4%)

Query: 187 SLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMIS 246
           +L LGK  H  +  S    D      L++MY KCG L  A ++F     +D+VTWNA++ 
Sbjct: 636 NLLLGKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERDLVTWNAILG 695

Query: 247 GYA-----QHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG 287
            YA       G  ++ L LF  ++        +T   +L  C ++G
Sbjct: 696 AYAASVDSNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSG 741



 Score = 44.3 bits (103), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 42/195 (21%), Positives = 85/195 (43%), Gaps = 20/195 (10%)

Query: 54   DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMIS 109
            ++  A+  F+++ +++ A WN M+ G  Q  N  +A +LF +M     E + VS+  ++S
Sbjct: 1258 NIEDAYRLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILS 1317

Query: 110  GYIECGQLDKAVELFKVAPVK-----SVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI 164
                 G   +A E     P        +  ++ ++    + G V     ++  K++  M 
Sbjct: 1318 ACSHAGLTSEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAGLV-----QEADKVIETM- 1371

Query: 165  GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK-SPLCKDTTALTPLISMYCKCGDL 223
                + +AS   ++L  C     ++ GK+V   +F   P   D+ A   L ++Y      
Sbjct: 1372 --PFKASASINRALLGACRIQGDVETGKRVAARLFALEPF--DSAAYVLLSNIYAAANRW 1427

Query: 224  EDACKLFLEIQRKDV 238
            +D       ++RK+V
Sbjct: 1428 DDVTDARKMMKRKNV 1442


>gi|15226200|ref|NP_180329.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216862|sp|Q9ZUW3.1|PP172_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g27610
 gi|3860271|gb|AAC73039.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|330252926|gb|AEC08020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 868

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 214/516 (41%), Positives = 307/516 (59%), Gaps = 43/516 (8%)

Query: 67  IKDTASWNTMISGFVQKKNMAKARDLF-------------------LAMP---------- 97
           + +  SW  MISGF+Q     +A DLF                    A+P          
Sbjct: 359 VGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTALPVISPSEVHAQ 418

Query: 98  ------EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENS 151
                 E++S   +A++  Y++ G++++A ++F     K +VAW+AM++GY + G  E +
Sbjct: 419 VVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGETEAA 478

Query: 152 WAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHL-SSLQLGKQVHQLVFKSPLCKDTTAL 210
                +K+   +   GI+PN  + SS+L  C+   +S+  GKQ H    KS L       
Sbjct: 479 -----IKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLDSSLCVS 533

Query: 211 TPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMK 270
           + L++MY K G++E A ++F   + KD+V+WN+MISGYAQHG+  KAL +F +MK   +K
Sbjct: 534 SALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVK 593

Query: 271 PDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVD 330
            D +TF+ +  AC HAGLV+ G +YFD MV D  IA   +H +CMVDL  RAG+L +A+ 
Sbjct: 594 MDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMK 653

Query: 331 LIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMK 390
           +I+ MP      I+ T+L+ACRVHK+ +L   AA  +  + P ++A  YV L+N+YA   
Sbjct: 654 VIENMPNPAGSTIWRTILAACRVHKKTELGRLAAEKIIAMKPEDSAA-YVLLSNMYAESG 712

Query: 391 KWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMK 450
            W + A++R  M E NV K PGYSWIEV    + F +GDR HP    I+ KL++L  R+K
Sbjct: 713 DWQERAKVRKLMNERNVKKEPGYSWIEVKNKTYSFLAGDRSHPLKDQIYMKLEDLSTRLK 772

Query: 451 LAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHR 510
             GY PD  + L  + +E KE +L  HSE+LAIAFGLI  P G+P+ + KNLRVCGDCH 
Sbjct: 773 DLGYEPDTSYVLQDIDDEHKEAVLAQHSERLAIAFGLIATPKGSPLLIIKNLRVCGDCHL 832

Query: 511 ATKYISAIEKREIIVRDTTRFHHF-KDGTCSCGDYW 545
             K I+ IE+REI+VRD+ RFHHF  DG CSCGD+W
Sbjct: 833 VIKLIAKIEEREIVVRDSNRFHHFSSDGVCSCGDFW 868



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 62/229 (27%), Positives = 112/229 (48%), Gaps = 6/229 (2%)

Query: 110 GYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIR 169
           G +   +L  A  LF  +P +   ++ +++     FG+  +   ++  +L   +  LG+ 
Sbjct: 36  GTVSSSRLYNAHNLFDKSPGRDRESYISLL-----FGFSRDGRTQEAKRLFLNIHRLGME 90

Query: 170 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 229
            + S  SSVL   + L     G+Q+H    K     D +  T L+  Y K  + +D  K+
Sbjct: 91  MDCSIFSSVLKVSATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKV 150

Query: 230 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLV 289
           F E++ ++VVTW  +ISGYA++   ++ L LF +M++EG +P+S TF A L      G+ 
Sbjct: 151 FDEMKERNVVTWTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVG 210

Query: 290 DLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 338
             G+Q    +V + G+         +++L  + G + +A  L  K   K
Sbjct: 211 GRGLQVHTVVVKN-GLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVK 258



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 88/350 (25%), Positives = 153/350 (43%), Gaps = 84/350 (24%)

Query: 11  SVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAF---DFFQRLP- 66
           S+L GF++  G+ ++A+ LF  I +       + + C + +S   V+A    + F R   
Sbjct: 63  SLLFGFSRD-GRTQEAKRLFLNIHR-----LGMEMDCSIFSSVLKVSATLCDELFGRQLH 116

Query: 67  --------IKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLD 118
                   + D +   +++  +++  N    R +F  M E+N V+W+ +ISGY      D
Sbjct: 117 CQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVTWTTLISGYARNSMND 176

Query: 119 KAVELF--------------------------------KVAPV-------KSVVAWTAMI 139
           + + LF                                +V  V       K++    ++I
Sbjct: 177 EVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNSLI 236

Query: 140 SGYMKFGYVENS---------------------WAEDGLKLLRMMIGLGIRPN-----AS 173
           + Y+K G V  +                     +A +GL L  + +   +R N      S
Sbjct: 237 NLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNYVRLSES 296

Query: 174 SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI 233
           S +SV+  C++L  L+  +Q+H  V K     D    T L+  Y KC  + DA +LF EI
Sbjct: 297 SFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCTAMLDALRLFKEI 356

Query: 234 Q-RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA 282
               +VV+W AMISG+ Q+   E+A+ LF +MK +G++P+  T+  +L A
Sbjct: 357 GCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTA 406



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 64/231 (27%), Positives = 116/231 (50%), Gaps = 6/231 (2%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI 164
           ++++  Y++        ++F     ++VV WT +ISGY +     NS  ++ L L   M 
Sbjct: 132 TSLVDTYMKGSNFKDGRKVFDEMKERNVVTWTTLISGYAR-----NSMNDEVLTLFMRMQ 186

Query: 165 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 224
             G +PN+ + ++ L   +       G QVH +V K+ L K       LI++Y KCG++ 
Sbjct: 187 NEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVR 246

Query: 225 DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 284
            A  LF + + K VVTWN+MISGYA +G   +AL +F  M+   ++    +F +++  C 
Sbjct: 247 KARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNYVRLSESSFASVIKLCA 306

Query: 285 HAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335
           +   +    Q   S+V  YG     +  T ++    +   +++A+ L K++
Sbjct: 307 NLKELRFTEQLHCSVVK-YGFLFDQNIRTALMVAYSKCTAMLDALRLFKEI 356


>gi|296081733|emb|CBI20738.3| unnamed protein product [Vitis vinifera]
          Length = 865

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 217/534 (40%), Positives = 314/534 (58%), Gaps = 22/534 (4%)

Query: 26  AQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKN 85
           A+E+F+ +   D++S+N M+S    +S +  +   F   L         T+ S  +    
Sbjct: 340 AREVFNDMKHLDLISWNSMISSCAQSSLEEESVNLFIDLLHEGLKPDHFTLAS--ITLAT 397

Query: 86  MAKARDLFLAMPEKNSVSWSAMISG--------------YIECGQLDKAVELFKVAPVKS 131
            AKA    + + +   +   A+ +G              YI+CG +  A  +F       
Sbjct: 398 AAKACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPD 457

Query: 132 VVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLG 191
            VAWT+MISG      V+N   +  L++   M    + P+  + ++++   S +++L+ G
Sbjct: 458 DVAWTSMISGC-----VDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQG 512

Query: 192 KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQH 251
           +Q+H  V K     D    T L+ MY KCG++EDA +LF ++  +++  WNAM+ G AQH
Sbjct: 513 RQLHANVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKMNVRNIALWNAMLVGLAQH 572

Query: 252 GKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDH 311
           G  E+A+ LF  MK  G++PD ++F+ +L AC+HAGL     +Y  SM NDYGI  + +H
Sbjct: 573 GNAEEAVNLFKSMKSHGIEPDRVSFIGILSACSHAGLTSEAYEYLHSMPNDYGIEPEIEH 632

Query: 312 YTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLN 371
           Y+C+VD LGRAG + EA  +I+ MPFK   +I   LL ACR+   ++  +  A  LF L 
Sbjct: 633 YSCLVDALGRAGLVQEADKVIETMPFKASASINRALLGACRIQGDVETGKRVAARLFALE 692

Query: 372 PANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRV 431
           P ++A  YV L+NIYAA  +WDDV   R  MK  NV K PG+SWI+V  ++H F   DR 
Sbjct: 693 PFDSAA-YVLLSNIYAAANRWDDVTDARKMMKRKNVKKDPGFSWIDVKNMLHLFVVDDRS 751

Query: 432 HPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVP 491
           HP+   I++K++E+ K ++  GYVPD EF L  V +E KE+ L +HSEKLAIA+GLI  P
Sbjct: 752 HPQADIIYDKVEEMMKTIREDGYVPDTEFVLLDVEDEEKERSLYYHSEKLAIAYGLISTP 811

Query: 492 LGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
             T IRV KNLRVCGDCH A KYIS + +REI++RD  RFHHF+DG CSCGDYW
Sbjct: 812 ASTTIRVIKNLRVCGDCHNAIKYISKVFEREIVLRDANRFHHFRDGVCSCGDYW 865



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 130/501 (25%), Positives = 210/501 (41%), Gaps = 76/501 (15%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIML----SCILLNSDDVVAAFDFFQRL 65
           N++L  ++K  G L  A+++FD  P+ D+V++N +L    + +  N  +       F RL
Sbjct: 116 NNLLTMYSKC-GSLSSARQVFDTTPERDLVTWNAILGAYAASVDSNDGNAQEGLHLF-RL 173

Query: 66  PIKDTASWNTMISGFVQKKNMAK----ARDLFLAMPEKNSVSWSAMISG-----YIECGQ 116
                 S   M    V K  +      A +       K  + W   +SG     Y +CG+
Sbjct: 174 LRASLGSTTRMTLAPVLKLCLNSGCLWAAEGVHGYAIKIGLEWDVFVSGALVNIYSKCGR 233

Query: 117 LDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLS 176
           +  A  LF     + VV W  M+ GY++ G       ++  +L       G+RP+  S+ 
Sbjct: 234 MRDARLLFDWMRERDVVLWNMMLKGYVQLGL-----EKEAFQLFSEFHRSGLRPDEFSVQ 288

Query: 177 SVLLGC--SHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ 234
            +L GC  +    L+LGKQVH +  KS L  D +    L++MY K G    A ++F +++
Sbjct: 289 LILNGCLWAGTDDLELGKQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMK 348

Query: 235 RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLL-----ACNHAGLV 289
             D+++WN+MIS  AQ    E+++ LF  +  EG+KPD  T  ++ L     AC    L+
Sbjct: 349 HLDLISWNSMISSCAQSSLEEESVNLFIDLLHEGLKPDHFTLASITLATAAKACGCLVLL 408

Query: 290 DLGIQY--------FDS-----------------MVND---YGIAAKPDH--YTCMVDLL 319
           D G Q         FDS                 MVN    +   + PD   +T M+   
Sbjct: 409 DQGKQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGC 468

Query: 320 GRAGKLVEAVDLIKKM---PFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAA 376
              G   +A+ +  +M      P    F TL+ A      L+       N+  L+  +  
Sbjct: 469 VDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDP 528

Query: 377 GCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELV 436
                L ++YA     +D  R+    K+ NV  +  ++ + VG   H    G+       
Sbjct: 529 FVGTSLVDMYAKCGNIEDAYRL---FKKMNVRNIALWNAMLVGLAQH----GNA------ 575

Query: 437 SIHEKLKELEKRMKLAGYVPD 457
              E+   L K MK  G  PD
Sbjct: 576 ---EEAVNLFKSMKSHGIEPD 593



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 50/106 (47%), Gaps = 5/106 (4%)

Query: 187 SLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMIS 246
           +L LGK  H  +  S    D      L++MY KCG L  A ++F     +D+VTWNA++ 
Sbjct: 92  NLLLGKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERDLVTWNAILG 151

Query: 247 GYA-----QHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG 287
            YA       G  ++ L LF  ++        +T   +L  C ++G
Sbjct: 152 AYAASVDSNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSG 197


>gi|242076924|ref|XP_002448398.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
 gi|241939581|gb|EES12726.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
          Length = 865

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 213/553 (38%), Positives = 325/553 (58%), Gaps = 32/553 (5%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDF-- 61
           +  V W  ++AGF  Q G   ++ ELF+++    +      L+ ++       +  D   
Sbjct: 334 RNNVAWTVLIAGFL-QHGCFTESVELFNQMRAELMTLDQFALATLI---SGCCSRMDLCL 389

Query: 62  --------FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE 113
                    +   I+     N++IS + +  N+  A  +F  M EK+ VSW++MI+ + +
Sbjct: 390 GRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAESIFRFMNEKDIVSWTSMITAHSQ 449

Query: 114 CGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIG-LGIRPNA 172
            G + KA E F     K+V+ W AM+  Y++ G       EDGL++  +M+    +RP+ 
Sbjct: 450 VGNIAKAREFFDGMSTKNVITWNAMLGAYIQHGA-----EEDGLRMYNVMLSEKDVRPDW 504

Query: 173 SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLE 232
            +  ++  GC+ L + +LG Q+     K  L  DT+    +I+MY KCG + +A K+F  
Sbjct: 505 VTYVTLFKGCADLGANKLGDQIIGRTVKVGLILDTSVANAVITMYSKCGRILEARKVFDF 564

Query: 233 IQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 292
           +  KD+V+WNAMI+GY+QHG G++A+ +FD +   G KPD I++VA+L  C+H+GLV  G
Sbjct: 565 LNVKDIVSWNAMITGYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGLVQEG 624

Query: 293 IQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACR 352
             YFD M   + I+   +H++CMVDLLGRAG L EA DLI +MP KP   ++G LLSAC+
Sbjct: 625 KSYFDMMKRVHNISPGLEHFSCMVDLLGRAGHLTEAKDLIDEMPMKPTAEVWGALLSACK 684

Query: 353 VHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPG 412
           +H   +LAE AA ++F L+  + +G Y+ +A IYA   K DD A+IR  M++  + K PG
Sbjct: 685 IHGNNELAELAAKHVFELDSPD-SGSYMLMAKIYADAGKSDDSAQIRKLMRDKGIKKNPG 743

Query: 413 YSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQ 472
           YSW+EV   VH F++ D  HP++++I +KL EL +++   GYV                +
Sbjct: 744 YSWMEVNNKVHVFKADDVSHPQVIAIRKKLDELMEKIARLGYV-----------RTDSPR 792

Query: 473 LLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFH 532
             + HSEKLA+AFGL+ +P   PI + KNLR+CGDCH   K IS++  RE ++RD  RFH
Sbjct: 793 SEIHHSEKLAVAFGLMSLPAWMPIHIMKNLRICGDCHTVIKLISSVTGREFVIRDAVRFH 852

Query: 533 HFKDGTCSCGDYW 545
           HF  G+CSCGDYW
Sbjct: 853 HFNGGSCSCGDYW 865



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 98/359 (27%), Positives = 164/359 (45%), Gaps = 48/359 (13%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK- 68
           NS+L G+ K  G +  A ELFD +P+ DVVS+N+M+S  L  S  V  A D    +  K 
Sbjct: 208 NSMLVGYVKTYG-VDHALELFDSMPERDVVSWNMMVSA-LSQSGRVREALDMVVDMQSKG 265

Query: 69  ---DTASWNTMISGFVQKKNMAKARDLFLA----MPEKNSVSWSAMISGYIECGQLDKAV 121
              D+ ++ + ++   +  ++   + L       +P  +    SA++  Y +CG   +A 
Sbjct: 266 VRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPCIDPYVASALVELYAKCGCFKEAK 325

Query: 122 ELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLG 181
            +F     ++ VAWT +I+G+++ G    S     ++L   M    +  +  +L++++ G
Sbjct: 326 GVFNSLHDRNNVAWTVLIAGFLQHGCFTES-----VELFNQMRAELMTLDQFALATLISG 380

Query: 182 CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKD---- 237
           C     L LG+Q+H L  KS   +       LISMY KC +L+ A  +F  +  KD    
Sbjct: 381 CCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAESIFRFMNEKDIVSW 440

Query: 238 ---------------------------VVTWNAMISGYAQHGKGEKALRLFDKMKDE-GM 269
                                      V+TWNAM+  Y QHG  E  LR+++ M  E  +
Sbjct: 441 TSMITAHSQVGNIAKAREFFDGMSTKNVITWNAMLGAYIQHGAEEDGLRMYNVMLSEKDV 500

Query: 270 KPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEA 328
           +PD +T+V L   C   G   LG Q     V   G+         ++ +  + G+++EA
Sbjct: 501 RPDWVTYVTLFKGCADLGANKLGDQIIGRTVK-VGLILDTSVANAVITMYSKCGRILEA 558



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 84/319 (26%), Positives = 148/319 (46%), Gaps = 47/319 (14%)

Query: 5   TTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQR 64
             +  N +L G+ K  G+L DA ELF ++P  DV S+N ++S     S   +A+ + F  
Sbjct: 70  NVITHNVMLNGYVKL-GRLSDAVELFGRMPARDVASWNTLMSG-YFQSQQYLASLESFVS 127

Query: 65  LPIKDTASWNT----------------------------------------MISGFVQKK 84
           +     +S N                                         ++  FV+  
Sbjct: 128 MHRSGDSSPNAFTFAYAMKSCGALGERSLALQLLGMVQKFGSQDDSDVAAALVDMFVRCG 187

Query: 85  NMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMK 144
            +  A  LF+ + E      ++M+ GY++   +D A+ELF   P + VV+W  M+S   +
Sbjct: 188 TVDLASRLFVRIKEPTIFCRNSMLVGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQ 247

Query: 145 FGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLC 204
            G V      + L ++  M   G+R ++++ +S L  C+ LSSL+ GKQ+H  V ++  C
Sbjct: 248 SGRVR-----EALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPC 302

Query: 205 KDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKM 264
            D    + L+ +Y KCG  ++A  +F  +  ++ V W  +I+G+ QHG   +++ LF++M
Sbjct: 303 IDPYVASALVELYAKCGCFKEAKGVFNSLHDRNNVAWTVLIAGFLQHGCFTESVELFNQM 362

Query: 265 KDEGMKPDSITFVALLLAC 283
           + E M  D      L+  C
Sbjct: 363 RAELMTLDQFALATLISGC 381



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 69/287 (24%), Positives = 125/287 (43%), Gaps = 37/287 (12%)

Query: 74  NTMISGFVQKKNMAKARDLFLA-MPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSV 132
           NT++  ++    +  AR L L  +   N ++ + M++GY++ G+L  AVELF   P + V
Sbjct: 43  NTLLHAYLSCGALPDARRLLLTDIAHPNVITHNVMLNGYVKLGRLSDAVELFGRMPARDV 102

Query: 133 VAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGK 192
            +W  ++SGY +       +       + M       PNA + +  +  C  L    L  
Sbjct: 103 ASWNTLMSGYFQ----SQQYLASLESFVSMHRSGDSSPNAFTFAYAMKSCGALGERSLAL 158

Query: 193 QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ------------------ 234
           Q+  +V K     D+     L+ M+ +CG ++ A +LF+ I+                  
Sbjct: 159 QLLGMVQKFGSQDDSDVAAALVDMFVRCGTVDLASRLFVRIKEPTIFCRNSMLVGYVKTY 218

Query: 235 -------------RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLL 281
                         +DVV+WN M+S  +Q G+  +AL +   M+ +G++ DS T+ + L 
Sbjct: 219 GVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLT 278

Query: 282 ACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEA 328
           AC     +  G Q    ++ +      P   + +V+L  + G   EA
Sbjct: 279 ACARLSSLRWGKQLHAQVIRNLP-CIDPYVASALVELYAKCGCFKEA 324



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 87/355 (24%), Positives = 142/355 (40%), Gaps = 86/355 (24%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSC------------- 47
           MN K  V+W S++   + Q G +  A+E FD +   +V+++N ML               
Sbjct: 432 MNEKDIVSWTSMITAHS-QVGNIAKAREFFDGMSTKNVITWNAMLGAYIQHGAEEDGLRM 490

Query: 48  --ILLNSDDV----VAAFDFFQRLP--------------------IKDTASWNTMISGFV 81
             ++L+  DV    V     F+                       I DT+  N +I+ + 
Sbjct: 491 YNVMLSEKDVRPDWVTYVTLFKGCADLGANKLGDQIIGRTVKVGLILDTSVANAVITMYS 550

Query: 82  QKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISG 141
           +   + +AR +F  +  K+ VSW+AMI+GY + G   +A+E+F                 
Sbjct: 551 KCGRILEARKVFDFLNVKDIVSWNAMITGYSQHGMGKQAIEIF----------------- 593

Query: 142 YMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK- 200
                       +D LK        G +P+  S  +VL GCSH   +Q GK    ++ + 
Sbjct: 594 ------------DDILK-------RGAKPDYISYVAVLSGCSHSGLVQEGKSYFDMMKRV 634

Query: 201 ---SPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVV-TWNAMISGYAQHGKGEK 256
              SP  +  + +  L+    + G L +A  L  E+  K     W A++S    HG  E 
Sbjct: 635 HNISPGLEHFSCMVDLLG---RAGHLTEAKDLIDEMPMKPTAEVWGALLSACKIHGNNEL 691

Query: 257 ALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDH 311
           A  L  K   E   PDS +++ +      AG  D   Q    ++ D GI   P +
Sbjct: 692 A-ELAAKHVFELDSPDSGSYMLMAKIYADAGKSDDSAQ-IRKLMRDKGIKKNPGY 744


>gi|326529685|dbj|BAK04789.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 879

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 226/534 (42%), Positives = 318/534 (59%), Gaps = 17/534 (3%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLS-CILLNSDDVVAAFDFFQRLPIKDTASWNTMISG 79
           G L DA+++F+ IP+ D++ +N ++S C          +   F R+  + +    T ++ 
Sbjct: 354 GLLDDARKVFEWIPRKDLLLWNALISGCSHGGCHG--ESLSLFCRMRKEGSDINRTTLAA 411

Query: 80  FVQKKNMAKA---RDLFLAMPEK-----NSVSWSAMISGYIECGQLDKAVELFKVAPVKS 131
            ++     +A        A+ EK     +S   + +I  Y +C  L  A ++F+     +
Sbjct: 412 VLKSTASLEAISDTTQVHALAEKIGFLSDSHVVNGLIDSYWKCNCLRYANKVFEEHSSDN 471

Query: 132 VVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLG 191
           ++A+T+MI+   +  +      ED +KL   M+  G+ P+   LSS+L  C+ LS+ + G
Sbjct: 472 IIAFTSMITALSQCDH-----GEDAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQG 526

Query: 192 KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQH 251
           KQVH  + K     D  A   L+  Y KCG +EDA   F  +  K VV+W+AMI G AQH
Sbjct: 527 KQVHAHLIKRKFMTDVFAGNALVYTYAKCGSIEDADLAFSGLPDKGVVSWSAMIGGLAQH 586

Query: 252 GKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDH 311
           G G++AL +F +M DE + P+ IT  ++L ACNHAGLVD    YF SM   +GI    +H
Sbjct: 587 GHGKRALDVFRRMVDERIAPNHITLTSVLCACNHAGLVDEAKGYFSSMKEMFGIDRTEEH 646

Query: 312 YTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLN 371
           Y+CM+DLLGRAGKL +A++L+  MPF+   A++G LL+A RVH+  +L + AA  LF L 
Sbjct: 647 YSCMIDLLGRAGKLDDAMELVNSMPFEANAAVWGALLAASRVHRDPELGKLAAEKLFVLE 706

Query: 372 PANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRV 431
           P   +G +V LAN YA+   WD+VA++R  MK++ V K P  SW+E+   VH F  GD+ 
Sbjct: 707 P-EKSGTHVLLANTYASAGMWDEVAKVRKLMKDSKVKKEPAMSWVELKDRVHTFIVGDKS 765

Query: 432 HPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVP 491
           HP    I+ KL+EL   M  AGYVP+LE  LH V +  KE LL  HSE+LA+AF LI  P
Sbjct: 766 HPRARDIYAKLEELGDLMSKAGYVPNLEVDLHDVDKSEKELLLSHHSERLAVAFALISTP 825

Query: 492 LGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
            G PIRV KNLR+C DCH A K+IS I  REII+RD  RFHHF DG CSCGDYW
Sbjct: 826 AGAPIRVKKNLRICRDCHVAFKFISKIVSREIIIRDINRFHHFSDGACSCGDYW 879



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 80/285 (28%), Positives = 143/285 (50%), Gaps = 29/285 (10%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNS--DDVVAAFDFFQR--- 64
           N +L+ ++K R     A+ +FD+ P P  VS++ +++    N+   + +AAF   +    
Sbjct: 41  NHLLSFYSKCRLP-GSARRVFDETPDPCHVSWSSLVTAYSNNALPREALAAFRAMRARGV 99

Query: 65  ------LPIKDTASWNTMISGFVQKKNMAK--ARDLFLAMPEKNSVSWSAMISGYIECGQ 116
                 LPI    + +  +   V    ++   + D+F+A         +A+++ Y   G 
Sbjct: 100 RCNEFALPIVLKCAPDAGLGVQVHAVAVSTGLSGDIFVA---------NALVAMYGGFGF 150

Query: 117 LDKAVELF-KVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSL 175
           +D+A  +F + A  ++ V+W  M+S ++K     N    D ++L   M+  G+RPN    
Sbjct: 151 VDEARRVFDEAARDRNAVSWNGMMSAFVK-----NDRCSDAVELFGEMVWSGVRPNEFGF 205

Query: 176 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR 235
           S V+  C+    L+ G++VH +V ++   KD      L+ MY K GD+  A  +F ++ +
Sbjct: 206 SCVVNACTGSRDLEAGRKVHAMVVRTGYDKDVFTANALVDMYSKLGDIHMAALVFGKVPK 265

Query: 236 KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 280
            DVV+WNA ISG   HG  + AL L  +MK  G+ P+  T  ++L
Sbjct: 266 TDVVSWNAFISGCVLHGHDQHALELLLQMKSSGLVPNVFTLSSIL 310



 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 103/388 (26%), Positives = 168/388 (43%), Gaps = 75/388 (19%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQ 63
           +  V+WN +++ F K   +  DA ELF ++    V       SC       VV A    +
Sbjct: 165 RNAVSWNGMMSAFVKN-DRCSDAVELFGEMVWSGVRPNEFGFSC-------VVNACTGSR 216

Query: 64  RLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVEL 123
            L          + +G+         +D+F A         +A++  Y + G +  A  +
Sbjct: 217 DLEAGRKVHAMVVRTGY--------DKDVFTA---------NALVDMYSKLGDIHMAALV 259

Query: 124 FKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVL--LG 181
           F   P   VV+W A ISG +  G+ +++     L+LL  M   G+ PN  +LSS+L    
Sbjct: 260 FGKVPKTDVVSWNAFISGCVLHGHDQHA-----LELLLQMKSSGLVPNVFTLSSILKACA 314

Query: 182 CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTW 241
            +   +  LG+Q+H  + K+    D      L+ MY K G L+DA K+F  I RKD++ W
Sbjct: 315 GAGAGAFALGRQIHGFMIKACADSDDYIGVALVDMYAKYGLLDDARKVFEWIPRKDLLLW 374

Query: 242 NAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL--------------------- 280
           NA+ISG +  G   ++L LF +M+ EG   +  T  A+L                     
Sbjct: 375 NALISGCSHGGCHGESLSLFCRMRKEGSDINRTTLAAVLKSTASLEAISDTTQVHALAEK 434

Query: 281 ---LACNHA--GLVD---------LGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLV 326
              L+ +H   GL+D            + F+   +D  IA     +T M+  L +     
Sbjct: 435 IGFLSDSHVVNGLIDSYWKCNCLRYANKVFEEHSSDNIIA-----FTSMITALSQCDHGE 489

Query: 327 EAVDLIKKM---PFKPQPAIFGTLLSAC 351
           +A+ L  +M     +P P +  +LL+AC
Sbjct: 490 DAIKLFMEMLRKGLEPDPFVLSSLLNAC 517



 Score = 42.7 bits (99), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 56/121 (46%), Gaps = 5/121 (4%)

Query: 174 SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI 233
           S+S +L   +   SL LG  +H  + KS L         L+S Y KC     A ++F E 
Sbjct: 6   SISPLLTRYAATQSLFLGAHIHAHLLKSGLLH--AFRNHLLSFYSKCRLPGSARRVFDET 63

Query: 234 QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGI 293
                V+W+++++ Y+ +    +AL  F  M+  G++ +      +L     AG   LG+
Sbjct: 64  PDPCHVSWSSLVTAYSNNALPREALAAFRAMRARGVRCNEFALPIVLKCAPDAG---LGV 120

Query: 294 Q 294
           Q
Sbjct: 121 Q 121


>gi|224132926|ref|XP_002321443.1| predicted protein [Populus trichocarpa]
 gi|222868439|gb|EEF05570.1| predicted protein [Populus trichocarpa]
          Length = 723

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 207/533 (38%), Positives = 313/533 (58%), Gaps = 49/533 (9%)

Query: 53  DDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAK-ARDLFLAMPEK----NSVSWSA- 106
           DD    FD   R+P+ +  SW  +I+G+VQ     + A +LFL M +     N  ++S+ 
Sbjct: 200 DDARKVFD---RMPVHNVMSWTAIITGYVQSGGCDREAIELFLEMVQGQVKPNHFTFSSV 256

Query: 107 ----------------------------------MISGYIECGQLDKAVELFKVAPVKSV 132
                                             +IS Y  CG ++ A + F V   K++
Sbjct: 257 LKACANLSDIWLGEQVYALVVKMRLASINCVGNSLISMYSRCGNMENARKAFDVLFEKNL 316

Query: 133 VAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGK 192
           V++  +++ Y K     +  +E+  +L   + G G   NA + +S+L G S + ++  G+
Sbjct: 317 VSYNTIVNAYAK-----SLNSEEAFELFNEIEGAGTGVNAFTFASLLSGASSIGAIGKGE 371

Query: 193 QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHG 252
           Q+H  + KS    +      LISMY +CG++E A ++F E+   +V++W +MI+G+A+HG
Sbjct: 372 QIHSRILKSGFKSNLHICNALISMYSRCGNIEAAFQVFNEMGDGNVISWTSMITGFAKHG 431

Query: 253 KGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY 312
              +AL  F KM + G+ P+ +T++A+L AC+H GL+  G+++F SM  ++GI  + +HY
Sbjct: 432 FATRALETFHKMLEAGVSPNEVTYIAVLSACSHVGLISEGLKHFKSMKVEHGIVPRMEHY 491

Query: 313 TCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNP 372
            C+VDLLGR+G L EA++L+  MPFK    +  T L ACRVH  +DL + AA  +   +P
Sbjct: 492 ACVVDLLGRSGHLEEAMELVNSMPFKADALVLRTFLGACRVHGNMDLGKHAAEMILEQDP 551

Query: 373 ANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVH 432
            + A  Y+ L+N++A+  +W++VA IR  MKE N+ K  G SWIEV   VH+F  GD  H
Sbjct: 552 HDPAA-YILLSNLHASAGQWEEVAEIRKKMKERNLTKEAGCSWIEVENKVHKFYVGDTSH 610

Query: 433 PELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPL 492
           P+   I+++L +L  ++K  GY+P  +F LH V EE KEQ L  HSEK+A+A+G I    
Sbjct: 611 PQAQEIYDELDQLALKIKELGYIPSTDFVLHDVEEEQKEQYLFQHSEKIAVAYGFISTST 670

Query: 493 GTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
             PIRVFKNLRVCGDCH A KY S + ++EI++RD  RFHHFKDGTCSC DYW
Sbjct: 671 SRPIRVFKNLRVCGDCHTAFKYFSIVRRKEIVLRDANRFHHFKDGTCSCNDYW 723



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 91/331 (27%), Positives = 171/331 (51%), Gaps = 17/331 (5%)

Query: 16  FAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCI--LLNSDDVVAAF-DFFQRLPIKDTAS 72
           F K  G L+ A ++FD++P  +VV++ +M++    L  S D V  F D      + D  +
Sbjct: 88  FVKGNGDLESAYKVFDRMPDRNVVTWTLMITRFQQLGFSRDAVDLFLDMVLSGYVPDRFT 147

Query: 73  WNTMISGFVQKKNMAKARDLFLAMPEKNSVSWS-----AMISGYIEC---GQLDKAVELF 124
            + ++S   +   ++  R  F  +  K+ +        +++  Y +C   G +D A ++F
Sbjct: 148 LSGVVSACAEMGLLSLGRQ-FHCLVMKSGLDLDVCVGCSLVDMYAKCVADGSVDDARKVF 206

Query: 125 KVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSH 184
              PV +V++WTA+I+GY++ G  +     + ++L   M+   ++PN  + SSVL  C++
Sbjct: 207 DRMPVHNVMSWTAIITGYVQSGGCD----REAIELFLEMVQGQVKPNHFTFSSVLKACAN 262

Query: 185 LSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAM 244
           LS + LG+QV+ LV K  L         LISMY +CG++E+A K F  +  K++V++N +
Sbjct: 263 LSDIWLGEQVYALVVKMRLASINCVGNSLISMYSRCGNMENARKAFDVLFEKNLVSYNTI 322

Query: 245 ISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYG 304
           ++ YA+    E+A  LF++++  G   ++ TF +LL   +  G +  G Q   S +   G
Sbjct: 323 VNAYAKSLNSEEAFELFNEIEGAGTGVNAFTFASLLSGASSIGAIGKGEQ-IHSRILKSG 381

Query: 305 IAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335
             +       ++ +  R G +  A  +  +M
Sbjct: 382 FKSNLHICNALISMYSRCGNIEAAFQVFNEM 412



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 96/394 (24%), Positives = 167/394 (42%), Gaps = 82/394 (20%)

Query: 2   NVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDF 61
           N +  V+W+++++ +A      +     FD            ML C    ++        
Sbjct: 3   NKRDLVSWSALISCYANNEKAFEAISAFFD------------MLECGFYPNEYCFTGV-- 48

Query: 62  FQRLPIKDTASWNTMISGFVQKK----------------------NMAKARDLFLAMPEK 99
           F+    K+  S   +I GF+ K                       ++  A  +F  MP++
Sbjct: 49  FRACSNKENISLGKIIFGFLLKTGYFESDVCVGCALIDMFVKGNGDLESAYKVFDRMPDR 108

Query: 100 NSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKL 159
           N V+W+ MI+ + + G    AV+LF             ++SGY+                
Sbjct: 109 NVVTWTLMITRFQQLGFSRDAVDLF----------LDMVLSGYV---------------- 142

Query: 160 LRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCK 219
                     P+  +LS V+  C+ +  L LG+Q H LV KS L  D      L+ MY K
Sbjct: 143 ----------PDRFTLSGVVSACAEMGLLSLGRQFHCLVMKSGLDLDVCVGCSLVDMYAK 192

Query: 220 C---GDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEK-ALRLFDKMKDEGMKPDSIT 275
           C   G ++DA K+F  +   +V++W A+I+GY Q G  ++ A+ LF +M    +KP+  T
Sbjct: 193 CVADGSVDDARKVFDRMPVHNVMSWTAIITGYVQSGGCDREAIELFLEMVQGQVKPNHFT 252

Query: 276 FVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335
           F ++L AC +   + LG Q + ++V    +A+       ++ +  R G +  A      +
Sbjct: 253 FSSVLKACANLSDIWLGEQVY-ALVVKMRLASINCVGNSLISMYSRCGNMENARKAFDVL 311

Query: 336 PFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFN 369
            F+     + T+++A    K L+  E  A  LFN
Sbjct: 312 -FEKNLVSYNTIVNA--YAKSLNSEE--AFELFN 340


>gi|297824049|ref|XP_002879907.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297325746|gb|EFH56166.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 565

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 227/565 (40%), Positives = 320/565 (56%), Gaps = 47/565 (8%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G L  A  L++++ + + +S NI+++   + + D+V+A   F  +P +   +WN MI+G 
Sbjct: 8   GDLPSAVALYERMRKKNFMSSNILING-YVRAGDLVSARKVFDEMPDRKLTTWNAMIAGL 66

Query: 81  VQKKNMAKARDLFLAM------PEK-------------NSVSWSAMISGY---------- 111
           +Q +   +   LF  M      P++              SVS    I GY          
Sbjct: 67  IQFEYNEEGLSLFREMHGLGFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYAIKYGLELDL 126

Query: 112 ----------IECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLR 161
                     +  G+L     + +  PV+++VAW  +I      G  +N   E  L L +
Sbjct: 127 VVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLI-----MGNAQNGCPETVLYLYK 181

Query: 162 MMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCG 221
           MM   G RPN  +  +VL  CS L+    G+Q+H    K         ++ LISMY KCG
Sbjct: 182 MMKISGCRPNKITFVTVLSSCSDLAIRGQGQQIHAEAIKIGASSVVAVVSSLISMYSKCG 241

Query: 222 DLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEG-MKPDSITFVALL 280
            L DA K F E + +D V W++MIS Y  HG+G++A++LF+ M ++  M+ + + F+ LL
Sbjct: 242 CLGDAAKAFSEREDEDEVMWSSMISAYGFHGQGDEAIKLFNSMAEQTEMEVNEVAFLNLL 301

Query: 281 LACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQ 340
            AC+H+GL D G++ FD MV  YG      HYTC+VDLLGRAG L +A  +IK MP KP 
Sbjct: 302 YACSHSGLKDKGLELFDMMVEKYGFKPGLKHYTCVVDLLGRAGCLDQAEAIIKSMPIKPD 361

Query: 341 PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRL 400
           P I+ TLLSAC +HK  ++A+     +  ++P N + CYV LAN++A+ K+W DV+ +R 
Sbjct: 362 PVIWKTLLSACNIHKNAEMAQKVFKEILEIDP-NDSACYVLLANVHASAKRWRDVSEVRK 420

Query: 401 SMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEF 460
           SM++ NV K  G SW E    VH+F+ GDR   +   I+  LKEL   MKL GY PD   
Sbjct: 421 SMRDKNVKKEAGISWFEHKGEVHQFKMGDRSQSKSKEIYSYLKELTLEMKLKGYKPDTAS 480

Query: 461 ALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEK 520
            LH + EE KE  L+ HSEKLA+AF L+ +P G PIR+ KNLRVC DCH A KYIS I  
Sbjct: 481 VLHDMDEEEKESDLVQHSEKLAVAFALMILPEGAPIRIIKNLRVCSDCHVAFKYISVIMN 540

Query: 521 REIIVRDTTRFHHFKDGTCSCGDYW 545
           REI +RD +RFHHF +G CSCGDYW
Sbjct: 541 REITLRDGSRFHHFINGKCSCGDYW 565



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 55/110 (50%), Gaps = 7/110 (6%)

Query: 214 ISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDS 273
           +SMY K GDL  A  L+  +++K+ ++ N +I+GY + G    A ++FD+M D  +    
Sbjct: 1   MSMYSKLGDLPSAVALYERMRKKNFMSSNILINGYVRAGDLVSARKVFDEMPDRKL---- 56

Query: 274 ITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAG 323
            T+ A++         + G+  F  M   +G+   PD YT      G AG
Sbjct: 57  TTWNAMIAGLIQFEYNEEGLSLFREM---HGLGFSPDEYTLGSVFSGSAG 103


>gi|357508385|ref|XP_003624481.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87240699|gb|ABD32557.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355499496|gb|AES80699.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 672

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 219/554 (39%), Positives = 332/554 (59%), Gaps = 25/554 (4%)

Query: 11  SVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDT 70
           S L     + G L DA++LFD+IP+ +VVS+  M+S  + N     A F F + L + +T
Sbjct: 125 SALIDMYSKCGYLNDARKLFDEIPERNVVSWTSMISGYVQNERAREAVFLFKEFLLVDET 184

Query: 71  ---------ASWNTMISGFV----QKKNMAKARDLFLAMPEKNSVSW-----SAMISGYI 112
                       ++++ G V     +  +    +    +  K          + ++  Y 
Sbjct: 185 DYDEIVGVGVGVDSVLLGCVISACARVCVKSVTECVHGLAVKKGFEGCLAVGNTLMDAYA 244

Query: 113 ECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLG-IRPN 171
           +CG++  + ++F       V +W ++I+ Y      +N  + +   L   M+  G +R N
Sbjct: 245 KCGEISVSRKVFDGMEETDVCSWNSLIAVY-----AQNGLSVEAFSLFSDMVKRGEVRYN 299

Query: 172 ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFL 231
           A +LS+VLL C+H  +LQ+GK +H  V K  L  +    T ++ MYCKCG +E A K F 
Sbjct: 300 AVTLSAVLLACAHSGALQIGKCIHDQVVKMELEDNLVVGTSIVDMYCKCGRVEMARKAFD 359

Query: 232 EIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDL 291
            ++RK+V +W  M++GY  HG G++A+++F +M   G+KP+ ITFV++L AC+HAGL+  
Sbjct: 360 RLKRKNVKSWTVMVAGYGMHGHGKEAMKVFYEMIRCGIKPNYITFVSVLAACSHAGLLKE 419

Query: 292 GIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSAC 351
           G  +F+ M  ++ +    +HY+CMVDLLGRAG L EA  LI++M  KP   ++G+LL AC
Sbjct: 420 GWHWFNKMKCEFDVEPGIEHYSCMVDLLGRAGYLKEAYGLIQEMKVKPDFIVWGSLLGAC 479

Query: 352 RVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMP 411
           R+HK ++L E +A  LF L+P+N  G YV L+NIYA   +WDDV R+R+ MK + ++K P
Sbjct: 480 RIHKNVELGEISARKLFKLDPSN-CGYYVLLSNIYADAGRWDDVERMRILMKNHGLLKTP 538

Query: 412 GYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKE 471
           GYS +E    VH F  GD+ HP+   I+E L EL  +++  GY+P++   L+ V  E K 
Sbjct: 539 GYSIVEHKGRVHVFLVGDKEHPQHEKIYEYLDELNVKLQEVGYMPNVTSVLYDVDVEEKG 598

Query: 472 QLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRF 531
            +L  HSEKLA+AFG++    G+ I++ KNLR+CGDCH A K IS I  REI++RD+ RF
Sbjct: 599 MVLRVHSEKLAVAFGIMNSVPGSVIQIIKNLRICGDCHFAIKLISKIVNREIVIRDSKRF 658

Query: 532 HHFKDGTCSCGDYW 545
           HHFKDG CSCGDYW
Sbjct: 659 HHFKDGLCSCGDYW 672



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 83/311 (26%), Positives = 143/311 (45%), Gaps = 45/311 (14%)

Query: 4   KTTV-NWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSD---DVVAAF 59
           KT+V +WNS++A FA+    L+ A   F  + +  +        C + +     D+ A  
Sbjct: 48  KTSVYSWNSIIADFARSGDSLQ-ALYAFSSMRKLSLHPNRSTFPCTIKSCSSLYDLCAGK 106

Query: 60  DFFQRLPI----KDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECG 115
              Q+  +     D    + +I  + +   +  AR LF  +PE+N VSW++MISGY++  
Sbjct: 107 QIHQQAFVFGYGSDIFVASALIDMYSKCGYLNDARKLFDEIPERNVVSWTSMISGYVQNE 166

Query: 116 QLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSL 175
           +  +AV LFK                  +F  V+ +  ++            I      +
Sbjct: 167 RAREAVFLFK------------------EFLLVDETDYDE------------IVGVGVGV 196

Query: 176 SSVLLG-----CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 230
            SVLLG     C+ +    + + VH L  K            L+  Y KCG++  + K+F
Sbjct: 197 DSVLLGCVISACARVCVKSVTECVHGLAVKKGFEGCLAVGNTLMDAYAKCGEISVSRKVF 256

Query: 231 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEG-MKPDSITFVALLLACNHAGLV 289
             ++  DV +WN++I+ YAQ+G   +A  LF  M   G ++ +++T  A+LLAC H+G +
Sbjct: 257 DGMEETDVCSWNSLIAVYAQNGLSVEAFSLFSDMVKRGEVRYNAVTLSAVLLACAHSGAL 316

Query: 290 DLGIQYFDSMV 300
            +G    D +V
Sbjct: 317 QIGKCIHDQVV 327


>gi|347954520|gb|AEP33760.1| organelle transcript processing 82, partial [Capsella
           bursa-pastoris]
          Length = 706

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 224/573 (39%), Positives = 331/573 (57%), Gaps = 49/573 (8%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
            S++A + K  G+ +DA+++FD+    DVVSY  ++     N   + +A   F  +P+KD
Sbjct: 142 TSLIAMYVKN-GRXEDARKVFDQSSHRDVVSYTALIKGYASNGY-IXSAQKMFDEIPVKD 199

Query: 70  TASWNTMISGFVQKKNMAKARDLFLAM------PEKNSV--------------------S 103
             SWN +ISG+ +  N  +A +LF  M      P+++++                    S
Sbjct: 200 VVSWNALISGYAETGNYKEALELFKEMMKTNVKPDESTMVTVLSACAQSASIELGRQVHS 259

Query: 104 W-------------SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVEN 150
           W             +A+I  YI+CG+++ A  LF+    K V++W  +I GY      + 
Sbjct: 260 WIDDHGFGSNLKIVNALIDLYIKCGEVETASGLFEGLSYKDVISWNTLIGGYTHMNLYK- 318

Query: 151 SWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK--SPLCKDTT 208
               + L L + M+  G  PN  ++ S+L  C+HL ++ +G+ +H  + K    +   ++
Sbjct: 319 ----EALLLFQEMLRSGESPNEVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVSNPSS 374

Query: 209 ALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEG 268
             T LI MY KCGD+E A ++F  +  + + +WNAMI G+A HG+   A  +F +M+ +G
Sbjct: 375 LRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHGRANPAFDIFSRMRKDG 434

Query: 269 MKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEA 328
           ++PD ITFV LL AC+H+G++DLG   F SM  DY I  K +HY CM+DLLG +G   EA
Sbjct: 435 IEPDDITFVGLLSACSHSGMLDLGRHIFRSMTEDYKITPKLEHYGCMIDLLGHSGLFKEA 494

Query: 329 VDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAA 388
            ++I  M   P   I+ +LL AC++H  ++L E  A NL  + P N+ G YV L+NIYA 
Sbjct: 495 EEMINSMEMDPDGVIWCSLLKACKMHGNVELGESFAQNLIKIEPKNS-GSYVLLSNIYAT 553

Query: 389 MKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKR 448
             +W++VA+ R  + +  + K+PG S IE+ +VVHEF  GD++HP    I+  L+E+E  
Sbjct: 554 AGRWNEVAKRRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKLHPRNREIYGMLEEMEVL 613

Query: 449 MKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDC 508
           ++ AG+VPD    L  + EE KE  L  HSEKLAIAFGLI    GT + + KNLRVC +C
Sbjct: 614 LEEAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNC 673

Query: 509 HRATKYISAIEKREIIVRDTTRFHHFKDGTCSC 541
           H ATK IS I KREII RD TRFHHF DG CSC
Sbjct: 674 HEATKLISKIYKREIIARDRTRFHHFXDGVCSC 706



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 75/253 (29%), Positives = 116/253 (45%), Gaps = 37/253 (14%)

Query: 117 LDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLS 176
           L  A+ +F      +++ W  M  G+       +S     L L   MI LG+ PN+ +  
Sbjct: 53  LTYAISVFDSIQEPNLLIWNTMFRGH-----ALSSDPVSALYLYVCMISLGLVPNSYTFP 107

Query: 177 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA---------- 226
            +L  C+   + + G+Q+H  V K     D    T LI+MY K G  EDA          
Sbjct: 108 FLLKACAKSKAFREGQQIHGHVLKLGCDLDLYVHTSLIAMYVKNGRXEDARKVFDQSSHR 167

Query: 227 ---------------------CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMK 265
                                 K+F EI  KDVV+WNA+ISGYA+ G  ++AL LF +M 
Sbjct: 168 DVVSYTALIKGYASNGYIXSAQKMFDEIPVKDVVSWNALISGYAETGNYKEALELFKEMM 227

Query: 266 DEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKL 325
              +KPD  T V +L AC  +  ++LG Q   S ++D+G  +       ++DL  + G++
Sbjct: 228 KTNVKPDESTMVTVLSACAQSASIELGRQ-VHSWIDDHGFGSNLKIVNALIDLYIKCGEV 286

Query: 326 VEAVDLIKKMPFK 338
             A  L + + +K
Sbjct: 287 ETASGLFEGLSYK 299


>gi|224126883|ref|XP_002319950.1| predicted protein [Populus trichocarpa]
 gi|222858326|gb|EEE95873.1| predicted protein [Populus trichocarpa]
          Length = 746

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 218/542 (40%), Positives = 319/542 (58%), Gaps = 32/542 (5%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQ 63
           +T V+W S+++G+A Q G+  +A  +F ++ + +V    I L  +L    DV        
Sbjct: 237 RTIVSWTSIISGYA-QNGQPIEALRIFSEMRKTNVRPDWIALVSVLRAYTDV-------- 287

Query: 64  RLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVEL 123
                +       I G V K  +    DL +++            S Y +CG +  A   
Sbjct: 288 -----EDLEHGKSIHGCVIKMGLECEFDLLISL-----------TSLYAKCGHVMVARLF 331

Query: 124 FKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCS 183
           F      S++ W AMISGY+K GY     AE+ ++L R+M    IRP++ +++S +  C+
Sbjct: 332 FNQVENPSLIFWNAMISGYVKNGY-----AEEAIELFRLMKSKNIRPDSITVTSSIAACA 386

Query: 184 HLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNA 243
            + SL+L + + + +  S    D    T LI  Y KCG ++ A  +F  I  KDVV W+A
Sbjct: 387 QIGSLELARWMDEYISMSEFRNDVIVNTSLIDTYAKCGSVDMARFVFDRIPDKDVVVWSA 446

Query: 244 MISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDY 303
           M+ GY  HG+G +++ LF  M+  G+ P+ +TFV LL AC ++GLV+ G   F  M  DY
Sbjct: 447 MMVGYGLHGQGRESIILFHAMRQAGVSPNDVTFVGLLTACKNSGLVEEGWDLFHRM-RDY 505

Query: 304 GIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFA 363
           GI  +  HY C+VDLLGRAG L  A + +  MP +P  +++G LLSAC++H+ + L E+A
Sbjct: 506 GIEPRHQHYACVVDLLGRAGHLDRAYNFVMNMPIEPGVSVWGALLSACKIHRHVTLGEYA 565

Query: 364 AMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVH 423
           A  LF+L+P N  G YVQL+N+YA+   WD VA++R+ M+E  + K  GYS IE+   + 
Sbjct: 566 AERLFSLDPYNT-GHYVQLSNLYASSCLWDCVAKVRVLMREKGLTKHLGYSVIEINGKLQ 624

Query: 424 EFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAI 483
            F++GD+ HP    I E++++LE+R+K AG+VP  E  LH +  E  E+ L  HSE+LAI
Sbjct: 625 AFQAGDKTHPRSKEIFEEVEDLERRLKEAGFVPHTESVLHDLNYEETEETLCNHSERLAI 684

Query: 484 AFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGD 543
           A+GLI  P GT +R+ KNLR C +CH A K IS +  REI+VRD  RFHHFKDG CSCGD
Sbjct: 685 AYGLISTPPGTTLRITKNLRACDNCHAAIKLISKLVSREIVVRDACRFHHFKDGACSCGD 744

Query: 544 YW 545
           YW
Sbjct: 745 YW 746



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 101/399 (25%), Positives = 186/399 (46%), Gaps = 20/399 (5%)

Query: 13  LAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPI----K 68
           L   A   G++  A++LFDK P PDV  +N ++ C   +      A + + R+ +     
Sbjct: 113 LVNKASNIGEVSCARKLFDKFPDPDVFLWNAIVRCYSRHGF-FGHAIEMYARMQVACVSP 171

Query: 69  DTASWNTMISGFVQKKNMAKAR----DLFLAMPEKNSVSWSAMISGYIECGQLDKAVELF 124
           D  S+  ++        +   R     +F    E +    + +++ Y +CG++ +A  +F
Sbjct: 172 DGFSFPCVLKACSALPALEMGRRVHGQIFRHGFESDVFVQNGLVALYAKCGEIVRANAVF 231

Query: 125 KVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSH 184
                +++V+WT++IS     GY +N    + L++   M    +RP+  +L SVL   + 
Sbjct: 232 GRLVDRTIVSWTSIIS-----GYAQNGQPIEALRIFSEMRKTNVRPDWIALVSVLRAYTD 286

Query: 185 LSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAM 244
           +  L+ GK +H  V K  L  +   L  L S+Y KCG +  A   F +++   ++ WNAM
Sbjct: 287 VEDLEHGKSIHGCVIKMGLECEFDLLISLTSLYAKCGHVMVARLFFNQVENPSLIFWNAM 346

Query: 245 ISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYG 304
           ISGY ++G  E+A+ LF  MK + ++PDSIT  + + AC   G ++L  ++ D  ++   
Sbjct: 347 ISGYVKNGYAEEAIELFRLMKSKNIRPDSITVTSSIAACAQIGSLELA-RWMDEYISMSE 405

Query: 305 IAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVH--KRLDLAEF 362
                   T ++D   + G +  A  +  ++P K    ++  ++    +H   R  +  F
Sbjct: 406 FRNDVIVNTSLIDTYAKCGSVDMARFVFDRIPDK-DVVVWSAMMVGYGLHGQGRESIILF 464

Query: 363 AAMNLFNLNPANAA--GCYVQLANIYAAMKKWDDVARIR 399
            AM    ++P +    G      N     + WD   R+R
Sbjct: 465 HAMRQAGVSPNDVTFVGLLTACKNSGLVEEGWDLFHRMR 503



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 29/119 (24%), Positives = 59/119 (49%), Gaps = 1/119 (0%)

Query: 210 LTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGM 269
           +  L++     G++  A KLF +    DV  WNA++  Y++HG    A+ ++ +M+   +
Sbjct: 110 IAKLVNKASNIGEVSCARKLFDKFPDPDVFLWNAIVRCYSRHGFFGHAIEMYARMQVACV 169

Query: 270 KPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEA 328
            PD  +F  +L AC+    +++G +     +  +G  +       +V L  + G++V A
Sbjct: 170 SPDGFSFPCVLKACSALPALEMG-RRVHGQIFRHGFESDVFVQNGLVALYAKCGEIVRA 227


>gi|225442904|ref|XP_002264123.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930 [Vitis vinifera]
          Length = 724

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 216/548 (39%), Positives = 320/548 (58%), Gaps = 18/548 (3%)

Query: 7   VNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCIL--------LNSDDVVAA 58
           V WN +++G+ + + +  ++ +LFD++ +  V+  +I L  +L        LN    V  
Sbjct: 186 VTWNVMISGYNRSK-QFDESMKLFDEMERMRVLPSSITLVSVLSACSKLKDLNVGKRV-- 242

Query: 59  FDFFQRLPIKDTASW-NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQL 117
             + + L I+      N +I  +    +M  A  +F  M  ++ +SW+A+++G+   GQ+
Sbjct: 243 HRYVKDLKIEPVRVLENALIDMYAACGDMDTALGIFDNMKSRDVISWTAIVTGFTNLGQV 302

Query: 118 DKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSS 177
             A   F   P +  V+WTAMI GY++     N + E  L L R M    I+P+  ++ S
Sbjct: 303 GLARNYFDKMPERDFVSWTAMIDGYLQV----NRFKE-VLSLFREMQAANIKPDEFTMVS 357

Query: 178 VLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKD 237
           +L  C+HL +L+LG+ +   + K+ +  D+     LI MY  CG++E A ++F  +  +D
Sbjct: 358 ILTACAHLGALELGEWIKAYIDKNEIKIDSFVGNALIDMYFNCGNVEKAIRIFNAMPHRD 417

Query: 238 VVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFD 297
            ++W A+I G A +G GE+AL +F +M    + PD +T + +L AC H+G+VD G ++F 
Sbjct: 418 KISWTAVIFGLAINGYGEEALDMFSQMLKASITPDEVTCIGVLCACTHSGMVDKGKKFFA 477

Query: 298 SMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRL 357
            M   +GI     HY CMVDLLGRAG L EA ++IK MP KP   ++G+LL ACRVH+  
Sbjct: 478 RMTTQHGIEPNVAHYGCMVDLLGRAGHLKEAHEVIKNMPVKPNSIVWGSLLGACRVHRDE 537

Query: 358 DLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIE 417
           ++AE AA  +  L P N A  YV L NIYAA  +W+ +  +R  M +  + K PG S IE
Sbjct: 538 EMAEMAAQQILELEPENGA-VYVLLCNIYAACNRWEKLHEVRKLMMDRGIKKTPGCSLIE 596

Query: 418 VGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFH 477
           +   VHEF +GD+VHP+   I+ KL E+   +K AGY PD       +GEE KE  +  H
Sbjct: 597 MNGSVHEFVAGDQVHPQSKEIYSKLDEMSVDLKFAGYSPDTSEVFLDIGEEEKESAVYRH 656

Query: 478 SEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDG 537
           SEKLAIAFGLI    G  IR+ KNLR+C DCH   K +S +  RE+IVRD TRFHHF+ G
Sbjct: 657 SEKLAIAFGLISSGPGVTIRIVKNLRMCVDCHYVAKLVSKVYNREVIVRDRTRFHHFRHG 716

Query: 538 TCSCGDYW 545
           +CSC DYW
Sbjct: 717 SCSCKDYW 724



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 86/388 (22%), Positives = 162/388 (41%), Gaps = 88/388 (22%)

Query: 9   WNSVLAGFAK---QRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNS--------DDVVA 57
           WN+++ G+++       +    E+ ++   PD  +Y  +L     ++         D + 
Sbjct: 87  WNNMIKGYSRVGCPNSAVSMYCEMLERGVMPDEYTYPFLLKRFTRDTAVKCGRELHDHIV 146

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQL 117
              F   + ++     N +I  +     ++ AR +F    + + V+W+ MISGY    Q 
Sbjct: 147 KLGFSSNVFVQ-----NALIHLYSLSGEVSVARGVFDRSSKGDVVTWNVMISGYNRSKQF 201

Query: 118 DKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSS 177
           D++++LF                              D ++ +R++      P++ +L S
Sbjct: 202 DESMKLF------------------------------DEMERMRVL------PSSITLVS 225

Query: 178 VLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKD 237
           VL  CS L  L +GK+VH+ V    +         LI MY  CGD++ A  +F  ++ +D
Sbjct: 226 VLSACSKLKDLNVGKRVHRYVKDLKIEPVRVLENALIDMYAACGDMDTALGIFDNMKSRD 285

Query: 238 V-------------------------------VTWNAMISGYAQHGKGEKALRLFDKMKD 266
           V                               V+W AMI GY Q  + ++ L LF +M+ 
Sbjct: 286 VISWTAIVTGFTNLGQVGLARNYFDKMPERDFVSWTAMIDGYLQVNRFKEVLSLFREMQA 345

Query: 267 EGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLV 326
             +KPD  T V++L AC H G ++LG ++  + ++   I         ++D+    G + 
Sbjct: 346 ANIKPDEFTMVSILTACAHLGALELG-EWIKAYIDKNEIKIDSFVGNALIDMYFNCGNVE 404

Query: 327 EAVDLIKKMPFKPQ----PAIFGTLLSA 350
           +A+ +   MP + +      IFG  ++ 
Sbjct: 405 KAIRIFNAMPHRDKISWTAVIFGLAING 432



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 70/296 (23%), Positives = 135/296 (45%), Gaps = 13/296 (4%)

Query: 113 ECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNA 172
           E G ++ A  +F   P  +   W  MI GY + G   NS     + +   M+  G+ P+ 
Sbjct: 65  ELGDMEYARMVFDTMPGPNHFVWNNMIKGYSRVG-CPNS----AVSMYCEMLERGVMPDE 119

Query: 173 SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLE 232
            +   +L   +  ++++ G+++H  + K     +      LI +Y   G++  A  +F  
Sbjct: 120 YTYPFLLKRFTRDTAVKCGRELHDHIVKLGFSSNVFVQNALIHLYSLSGEVSVARGVFDR 179

Query: 233 IQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 292
             + DVVTWN MISGY +  + +++++LFD+M+   + P SIT V++L AC+    +++G
Sbjct: 180 SSKGDVVTWNVMISGYNRSKQFDESMKLFDEMERMRVLPSSITLVSVLSACSKLKDLNVG 239

Query: 293 IQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACR 352
            +     V D  I         ++D+    G +  A+ +   M  K +  I  T +    
Sbjct: 240 -KRVHRYVKDLKIEPVRVLENALIDMYAACGDMDTALGIFDNM--KSRDVISWTAI---- 292

Query: 353 VHKRLDLAEFA-AMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNV 407
           V    +L +   A N F+  P      +  + + Y  + ++ +V  +   M+  N+
Sbjct: 293 VTGFTNLGQVGLARNYFDKMPERDFVSWTAMIDGYLQVNRFKEVLSLFREMQAANI 348


>gi|147856457|emb|CAN80769.1| hypothetical protein VITISV_013866 [Vitis vinifera]
          Length = 761

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 229/585 (39%), Positives = 341/585 (58%), Gaps = 52/585 (8%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLN--SDDVVAA 58
           M  +  + W +++ G+AK +  L+ A+  FD +P+  VVS+N MLS    N  +++V+  
Sbjct: 189 MPERNVITWTAMVTGYAKVK-DLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEVLRL 247

Query: 59  FDFFQRLPIK-DTASWNTMISG-----------------------------------FVQ 82
           FD      I+ D  +W T+IS                                    + +
Sbjct: 248 FDEMVNAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKQIQLNCFVRTALLDMYAK 307

Query: 83  KKNMAKARDLFLAMPE-KNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISG 141
             ++  AR +F  +   +NSV+W+AMIS Y   G LD A ELF   P ++VV W +MI+G
Sbjct: 308 CGSIGAARRIFDELGAYRNSVTWNAMISAYTRVGNLDSARELFNTMPGRNVVTWNSMIAG 367

Query: 142 YMKFGYVENSWAEDGLKLLRMMI-GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK 200
           Y      +N  +   ++L + MI    + P+  ++ SV+  C HL +L+LG  V + + +
Sbjct: 368 Y-----AQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALELGNWVVRFLTE 422

Query: 201 SPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRL 260
           + +    +    +I MY +CG +EDA ++F E+  +DVV++N +ISG+A HG G +A+ L
Sbjct: 423 NQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEAINL 482

Query: 261 FDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLG 320
              MK+ G++PD +TF+ +L AC+HAGL++ G + F+S + D  I    DHY CMVDLLG
Sbjct: 483 MSTMKEGGIEPDRVTFIGVLTACSHAGLLEEGRKVFES-IKDPAI----DHYACMVDLLG 537

Query: 321 RAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYV 380
           R G+L +A   +++MP +P   ++G+LL+A R+HK+++L E AA  LF L P N+ G ++
Sbjct: 538 RVGELEDAKRTMERMPMEPHAGVYGSLLNASRIHKQVELGELAANKLFELEPDNS-GNFI 596

Query: 381 QLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHE 440
            L+NIYA+  +W DV RIR +MK+  V K  G+SW+E G  +H+F   DR H     I++
Sbjct: 597 LLSNIYASAGRWKDVERIREAMKKGGVKKTTGWSWVEYGGKLHKFIVADRSHERSDDIYQ 656

Query: 441 KLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFK 500
            L EL K+M+ AGY+ D    L  V EE KE+++  HSEKLAI + L+    G  IRV K
Sbjct: 657 LLIELRKKMREAGYIADKSCVLRDVEEEEKEEIVGTHSEKLAICYALLVSEAGAVIRVVK 716

Query: 501 NLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           NLRVC DCH A K IS +E R IIVRD  RFH F DG CSC DYW
Sbjct: 717 NLRVCWDCHTAIKMISKLEGRVIIVRDNNRFHCFNDGLCSCKDYW 761



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 93/328 (28%), Positives = 164/328 (50%), Gaps = 42/328 (12%)

Query: 62  FQRLP--IKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDK 119
           F  +P   +  A WN M+SG+ + ++  +A+ LF  MPE+N ++W+AM++GY +   L+ 
Sbjct: 153 FDEIPDYERKVADWNAMVSGYWKWESEGQAQWLFDVMPERNVITWTAMVTGYAKVKDLEA 212

Query: 120 AVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVL 179
           A   F   P +SVV+W AM+S     GY +N  AE+ L+L   M+  GI P+ ++  +V+
Sbjct: 213 ARRYFDCMPERSVVSWNAMLS-----GYAQNGLAEEVLRLFDEMVNAGIEPDETTWVTVI 267

Query: 180 LGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKC------------------- 220
             CS      L   + + + +  +  +    T L+ MY KC                   
Sbjct: 268 SACSSRGDPCLAASLVRTLHQKQIQLNCFVRTALLDMYAKCGSIGAARRIFDELGAYRNS 327

Query: 221 -------------GDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKM-KD 266
                        G+L+ A +LF  +  ++VVTWN+MI+GYAQ+G+   A+ LF +M   
Sbjct: 328 VTWNAMISAYTRVGNLDSARELFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITA 387

Query: 267 EGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLV 326
           + + PD +T V+++ AC H G ++LG  +    + +  I      +  M+ +  R G + 
Sbjct: 388 KKLTPDEVTMVSVISACGHLGALELG-NWVVRFLTENQIKLSISGHNAMIFMYSRCGSME 446

Query: 327 EAVDLIKKMPFKPQPAIFGTLLSACRVH 354
           +A  + ++M  +   + + TL+S    H
Sbjct: 447 DAKRVFQEMATRDVVS-YNTLISGFAAH 473



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 76/318 (23%), Positives = 122/318 (38%), Gaps = 85/318 (26%)

Query: 123 LFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRM---MIGLGIRPNASSLSSVL 179
           LF      +V  +T+M+  Y        S  +D  K++ M   M G G+RP+A  +  +L
Sbjct: 56  LFNSTLNPNVFVFTSMLRFY--------SHLQDHAKVVLMFEHMQGCGVRPDAF-VYPIL 106

Query: 180 LGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI---QRK 236
           +     S+   G   H  V K     D      +I MY + G +  A K+F EI   +RK
Sbjct: 107 IK----SAGNGGIGFHAHVLKLGHGSDAFVRNAVIDMYARLGPIGHARKVFDEIPDYERK 162

Query: 237 ------------------------------DVVTW------------------------- 241
                                         +V+TW                         
Sbjct: 163 VADWNAMVSGYWKWESEGQAQWLFDVMPERNVITWTAMVTGYAKVKDLEAARRYFDCMPE 222

Query: 242 ------NAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQY 295
                 NAM+SGYAQ+G  E+ LRLFD+M + G++PD  T+V ++ AC+  G   L    
Sbjct: 223 RSVVSWNAMLSGYAQNGLAEEVLRLFDEMVNAGIEPDETTWVTVISACSSRGDPCLAASL 282

Query: 296 FDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHK 355
             ++ +   I       T ++D+  + G +  A  +  ++        +  ++SA     
Sbjct: 283 VRTL-HQKQIQLNCFVRTALLDMYAKCGSIGAARRIFDELGAYRNSVTWNAMISAYTRVG 341

Query: 356 RLDLAEFAAMNLFNLNPA 373
            LD    +A  LFN  P 
Sbjct: 342 NLD----SARELFNTMPG 355


>gi|42566761|ref|NP_193101.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635639|sp|Q9SVP7.2|PP307_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g13650
 gi|332657909|gb|AEE83309.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1064

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 214/528 (40%), Positives = 301/528 (57%), Gaps = 45/528 (8%)

Query: 57   AAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----------NSVS--- 103
             A+D   R   KD  SW TMI+G+ Q     KA   F  M ++          N+VS   
Sbjct: 543  TAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACA 602

Query: 104  --------------------------WSAMISGYIECGQLDKAVELFKVAPVKSVVAWTA 137
                                       +A+++ Y  CG+++++   F+       +AW A
Sbjct: 603  GLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNA 662

Query: 138  MISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQL 197
            ++SG+ + G       E+ L++   M   GI  N  +  S +   S  ++++ GKQVH +
Sbjct: 663  LVSGFQQSGN-----NEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAV 717

Query: 198  VFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKA 257
            + K+    +T     LISMY KCG + DA K FLE+  K+ V+WNA+I+ Y++HG G +A
Sbjct: 718  ITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEA 777

Query: 258  LRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVD 317
            L  FD+M    ++P+ +T V +L AC+H GLVD GI YF+SM ++YG++ KP+HY C+VD
Sbjct: 778  LDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVD 837

Query: 318  LLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAG 377
            +L RAG L  A + I++MP KP   ++ TLLSAC VHK +++ EFAA +L  L P ++A 
Sbjct: 838  MLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSA- 896

Query: 378  CYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVS 437
             YV L+N+YA  KKWD     R  MKE  V K PG SWIEV   +H F  GD+ HP    
Sbjct: 897  TYVLLSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSFYVGDQNHPLADE 956

Query: 438  IHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIR 497
            IHE  ++L KR    GYV D    L+ +  E K+ ++  HSEKLAI+FGL+ +P   PI 
Sbjct: 957  IHEYFQDLTKRASEIGYVQDCFSLLNELQHEQKDPIIFIHSEKLAISFGLLSLPATVPIN 1016

Query: 498  VFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
            V KNLRVC DCH   K++S +  REIIVRD  RFHHF+ G CSC DYW
Sbjct: 1017 VMKNLRVCNDCHAWIKFVSKVSNREIIVRDAYRFHHFEGGACSCKDYW 1064



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 100/368 (27%), Positives = 161/368 (43%), Gaps = 51/368 (13%)

Query: 6   TVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIM---LSCILLNSDDVVAAFDFF 62
           T+ W  +L G  K  G L + ++L  +I +  + S   +   L    L   D+  AF  F
Sbjct: 86  TLKW--LLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGAFKVF 143

Query: 63  QRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIEC-------- 114
             +P +   +WN MI     +  + +   LF+ M  +N        SG +E         
Sbjct: 144 DEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSVAF 203

Query: 115 --------------------------------GQLDKAVELFKVAPVKSVVAWTAMISGY 142
                                           G +D A  +F    +K   +W AMISG 
Sbjct: 204 DVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGL 263

Query: 143 MKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSP 202
            K     N    + ++L   M  LGI P   + SSVL  C  + SL++G+Q+H LV K  
Sbjct: 264 SK-----NECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLG 318

Query: 203 LCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFD 262
              DT     L+S+Y   G+L  A  +F  + ++D VT+N +I+G +Q G GEKA+ LF 
Sbjct: 319 FSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFK 378

Query: 263 KMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRA 322
           +M  +G++PDS T  +L++AC+  G +  G Q   +     G A+       +++L  + 
Sbjct: 379 RMHLDGLEPDSNTLASLVVACSADGTLFRG-QQLHAYTTKLGFASNNKIEGALLNLYAKC 437

Query: 323 GKLVEAVD 330
             +  A+D
Sbjct: 438 ADIETALD 445



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 85/318 (26%), Positives = 147/318 (46%), Gaps = 19/318 (5%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK----DTASWNTM 76
           G L  A+ +F  + Q D V+YN +++  L        A + F+R+ +     D+ +  ++
Sbjct: 337 GNLISAEHIFSNMSQRDAVTYNTLING-LSQCGYGEKAMELFKRMHLDGLEPDSNTLASL 395

Query: 77  ISGFVQKKNMAKARDLF-----LAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKS 131
           +        + + + L      L     N +   A+++ Y +C  ++ A++ F    V++
Sbjct: 396 VVACSADGTLFRGQQLHAYTTKLGFASNNKIE-GALLNLYAKCADIETALDYFLETEVEN 454

Query: 132 VVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLG 191
           VV W  M+  Y     + NS+     ++ R M    I PN  +  S+L  C  L  L+LG
Sbjct: 455 VVLWNVMLVAYGLLDDLRNSF-----RIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELG 509

Query: 192 KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQH 251
           +Q+H  + K+    +    + LI MY K G L+ A  + +    KDVV+W  MI+GY Q+
Sbjct: 510 EQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQY 569

Query: 252 GKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGI-QYFDSMVNDYGIAAKPD 310
              +KAL  F +M D G++ D +     + AC  AGL  L   Q   +     G ++   
Sbjct: 570 NFDDKALTTFRQMLDRGIRSDEVGLTNAVSAC--AGLQALKEGQQIHAQACVSGFSSDLP 627

Query: 311 HYTCMVDLLGRAGKLVEA 328
               +V L  R GK+ E+
Sbjct: 628 FQNALVTLYSRCGKIEES 645



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 96/368 (26%), Positives = 141/368 (38%), Gaps = 75/368 (20%)

Query: 167 GIRPNASSLSSVLLGCSHLS-SLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLED 225
           GIRPN  +L  +L GC   + SL  G+++H  + K  L  +      L   Y   GDL  
Sbjct: 79  GIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYG 138

Query: 226 ACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN- 284
           A K+F E+  + + TWN MI   A      +   LF +M  E + P+  TF  +L AC  
Sbjct: 139 AFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRG 198

Query: 285 -----------HA------------------------GLVDLGIQYFDSMVNDYGIAAKP 309
                      HA                        G VDL  + FD      G+  K 
Sbjct: 199 GSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFD------GLRLK- 251

Query: 310 DH--YTCMVDLLGRAGKLVEAVDLIKKM---PFKPQPAIFGTLLSACRVHKRLDLAEFAA 364
           DH  +  M+  L +     EA+ L   M      P P  F ++LSAC+  + L++ E   
Sbjct: 252 DHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGE--Q 309

Query: 365 MNLFNLNPANAAGCYV--QLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVV 422
           ++   L    ++  YV   L ++Y  +        I  +M + + V           T++
Sbjct: 310 LHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTY--------NTLI 361

Query: 423 HEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPD------LEFALHAVGEEVKEQLLLF 476
           +                EK  EL KRM L G  PD      L  A  A G   + Q L  
Sbjct: 362 NGLSQ--------CGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHA 413

Query: 477 HSEKLAIA 484
           ++ KL  A
Sbjct: 414 YTTKLGFA 421


>gi|356509847|ref|XP_003523656.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Glycine max]
          Length = 1611

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 209/516 (40%), Positives = 301/516 (58%), Gaps = 45/516 (8%)

Query: 69   DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVS------------------------- 103
            D ASWN ++ G++   +  KA  L++ M E    S                         
Sbjct: 1102 DLASWNAIMHGYIVSGDFPKALRLYILMQESGERSDQITLVNAAKAAGGLVGLKQGKQIH 1161

Query: 104  --------------WSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVE 149
                           S ++  Y++CG+++ A  +F   P    VAWT MISG      VE
Sbjct: 1162 AVVVKRGFNLDLFVTSGVLDMYLKCGEMESARRVFSEIPSPDDVAWTTMISGC-----VE 1216

Query: 150  NSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTA 209
            N   E  L     M    ++P+  + ++++  CS L++L+ G+Q+H  + K     D   
Sbjct: 1217 NGQEEHALFTYHQMRLSKVQPDEYTFATLVKACSLLTALEQGRQIHANIVKLNCAFDPFV 1276

Query: 210  LTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGM 269
            +T L+ MY KCG++EDA  LF     + + +WNAMI G AQHG  ++AL+ F  MK  G+
Sbjct: 1277 MTSLVDMYAKCGNIEDARGLFKRTNTRRIASWNAMIVGLAQHGNAKEALQFFKYMKSRGV 1336

Query: 270  KPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAV 329
             PD +TF+ +L AC+H+GLV    + F SM  +YGI  + +HY+C+VD L RAG++ EA 
Sbjct: 1337 MPDRVTFIGVLSACSHSGLVSEAYENFYSMQKNYGIEPEIEHYSCLVDALSRAGRIEEAE 1396

Query: 330  DLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAM 389
             +I  MPF+   +++ TLL+ACRV    +  +  A  L  L P+++A  YV L+N+YAA 
Sbjct: 1397 KVISSMPFEASASMYRTLLNACRVQVDRETGKRVAEKLLALEPSDSAA-YVLLSNVYAAA 1455

Query: 390  KKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRM 449
             +W++VA  R  M++ NV K PG+SW+++   VH F +GDR H E   I+ K++ + KR+
Sbjct: 1456 NQWENVASARNMMRKVNVKKDPGFSWVDLKNKVHLFVAGDRSHEETDVIYNKVEYIMKRI 1515

Query: 450  KLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCH 509
            +  GYVPD +FAL  V EE KE  L +HSEKLAIA+GL+K P  T +RV KNLRVCGDCH
Sbjct: 1516 REEGYVPDTDFALVDVEEEDKECSLYYHSEKLAIAYGLMKTPPSTTLRVIKNLRVCGDCH 1575

Query: 510  RATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
             A KYIS + KREI++RD  RFHHF++G CSCGDYW
Sbjct: 1576 SAIKYISKVFKREIVLRDANRFHHFRNGICSCGDYW 1611



 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 87/337 (25%), Positives = 148/337 (43%), Gaps = 46/337 (13%)

Query: 38   VVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLA-- 95
            VVS    L  + + +  V  A   F ++   D  SWNTMISG         +  +F+   
Sbjct: 969  VVSVGNCLINMYVKAGSVSRARSVFGQMNEVDLISWNTMISGCTLSGLEECSVGMFVHLL 1028

Query: 96   ----MPEKNSVS----------------------------------WSAMISGYIECGQL 117
                +P++ +V+                                   +A+I  Y + G++
Sbjct: 1029 RDSLLPDQFTVASVLRACSSLEGGYYLATQIHACAMKAGVVLDSFVSTALIDVYSKRGKM 1088

Query: 118  DKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSS 177
            ++A  LF       + +W A++ GY+  G    +     L+L  +M   G R +  +L +
Sbjct: 1089 EEAEFLFVNQDGFDLASWNAIMHGYIVSGDFPKA-----LRLYILMQESGERSDQITLVN 1143

Query: 178  VLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKD 237
                   L  L+ GKQ+H +V K     D    + ++ MY KCG++E A ++F EI   D
Sbjct: 1144 AAKAAGGLVGLKQGKQIHAVVVKRGFNLDLFVTSGVLDMYLKCGEMESARRVFSEIPSPD 1203

Query: 238  VVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFD 297
             V W  MISG  ++G+ E AL  + +M+   ++PD  TF  L+ AC+    ++ G Q   
Sbjct: 1204 DVAWTTMISGCVENGQEEHALFTYHQMRLSKVQPDEYTFATLVKACSLLTALEQGRQIHA 1263

Query: 298  SMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKK 334
            ++V     A  P   T +VD+  + G + +A  L K+
Sbjct: 1264 NIVK-LNCAFDPFVMTSLVDMYAKCGNIEDARGLFKR 1299



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 89/351 (25%), Positives = 146/351 (41%), Gaps = 42/351 (11%)

Query: 107  MISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGL 166
            +I+ Y++ G + +A  +F       +++W  MISG    G  E S     + +   ++  
Sbjct: 976  LINMYVKAGSVSRARSVFGQMNEVDLISWNTMISGCTLSGLEECS-----VGMFVHLLRD 1030

Query: 167  GIRPNASSLSSVLLGCSHLSS-LQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLED 225
             + P+  +++SVL  CS L     L  Q+H    K+ +  D+   T LI +Y K G +E+
Sbjct: 1031 SLLPDQFTVASVLRACSSLEGGYYLATQIHACAMKAGVVLDSFVSTALIDVYSKRGKMEE 1090

Query: 226  ACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN- 284
            A  LF+     D+ +WNA++ GY   G   KALRL+  M++ G + D IT V    A   
Sbjct: 1091 AEFLFVNQDGFDLASWNAIMHGYIVSGDFPKALRLYILMQESGERSDQITLVNAAKAAGG 1150

Query: 285  ----------HAGLVDLGIQ---YFDSMVND--------------YGIAAKPDH--YTCM 315
                      HA +V  G     +  S V D              +     PD   +T M
Sbjct: 1151 LVGLKQGKQIHAVVVKRGFNLDLFVTSGVLDMYLKCGEMESARRVFSEIPSPDDVAWTTM 1210

Query: 316  VDLLGRAGKLVEAVDLIKKMPF---KPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNP 372
            +      G+   A+    +M     +P    F TL+ AC +   L+       N+  LN 
Sbjct: 1211 ISGCVENGQEEHALFTYHQMRLSKVQPDEYTFATLVKACSLLTALEQGRQIHANIVKLNC 1270

Query: 373  ANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVH 423
            A        L ++YA   K  ++   R   K  N  ++  ++ + VG   H
Sbjct: 1271 AFDPFVMTSLVDMYA---KCGNIEDARGLFKRTNTRRIASWNAMIVGLAQH 1318



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 77/175 (44%), Gaps = 6/175 (3%)

Query: 107 MISGYIECGQLDKAVELFKVAP--VKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI 164
           +I+ Y +CG L  A +LF   P   + +V W A++S            + DG  L R++ 
Sbjct: 697 LITMYAKCGSLSSARKLFDTTPDTNRDLVTWNAILSALAAHA----DKSHDGFHLFRLLR 752

Query: 165 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 224
              +     +L+ V   C   +S    + +H    K  L  D      L+++Y K G + 
Sbjct: 753 RSVVSTTRHTLAPVFKMCLLSASPSASESLHGYAVKIGLQWDVFVAGALVNIYAKFGLIR 812

Query: 225 DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVAL 279
           +A  LF  +  +DVV WN M+  Y       +A+ LF +    G +PD +T   L
Sbjct: 813 EARVLFDGMAVRDVVLWNVMMKAYVDTCLEYEAMLLFSEFHRTGFRPDDVTLRTL 867



 Score = 55.1 bits (131), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 36/110 (32%), Positives = 48/110 (43%), Gaps = 3/110 (2%)

Query: 177 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI--Q 234
           S+L      S L LGK+ H  +  S    D      LI+MY KCG L  A KLF      
Sbjct: 661 SILRQAIAASDLSLGKRAHARILTSGHHPDRFVTNNLITMYAKCGSLSSARKLFDTTPDT 720

Query: 235 RKDVVTWNAMISGYAQHG-KGEKALRLFDKMKDEGMKPDSITFVALLLAC 283
            +D+VTWNA++S  A H  K      LF  ++   +     T   +   C
Sbjct: 721 NRDLVTWNAILSALAAHADKSHDGFHLFRLLRRSVVSTTRHTLAPVFKMC 770


>gi|297739711|emb|CBI29893.3| unnamed protein product [Vitis vinifera]
          Length = 784

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 217/533 (40%), Positives = 319/533 (59%), Gaps = 17/533 (3%)

Query: 23  LKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTA----SWNTMIS 78
           L DA+ + D++P+ +VVS+  M+S           A   F  + +  TA    ++ T+++
Sbjct: 61  LGDARRVLDEMPERNVVSWTAMISG-YSQRGYASEALHLFVEMLMSGTAPNEFTFATVLT 119

Query: 79  GFVQKKNMAKARDLFLAMP----EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVA 134
                      R +   +     E +    S+++  Y + G++ +A  +F   P + VV+
Sbjct: 120 SCTSSSGFQLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVS 179

Query: 135 WTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQV 194
            TA+ISGY + G       E+ L L R +   G+R N  + +SVL   S L++L  G+QV
Sbjct: 180 CTAIISGYAQLGL-----DEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQV 234

Query: 195 HQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKG 254
           H  V ++ L         LI MY KCG L  + ++F  +  + V++WNAM+ GY++HG G
Sbjct: 235 HSHVLRAKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLG 294

Query: 255 EKALRLFDKMKDEG-MKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDY-GIAAKPDHY 312
            +A+ LF  MK+E  +KPDS+TF+A+L  C+H G+ D G++ F  MVN   G   + +HY
Sbjct: 295 REAVELFKLMKEENKVKPDSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHY 354

Query: 313 TCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNP 372
            C+VDL GRAG++ EA + IKKMPF+P  AI+G+LL ACRVH+ + + EF A  L  +  
Sbjct: 355 GCVVDLFGRAGRVEEAFEFIKKMPFEPTAAIWGSLLGACRVHQNVHIGEFVARRLLEIES 414

Query: 373 ANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVH 432
            NA G YV L+N+YA+  +WDDV  +R  MKE  V+K PG SWIE+   +H F + DR H
Sbjct: 415 ENA-GNYVILSNLYASAGRWDDVRTVRELMKEKAVIKEPGRSWIELDQTLHTFHASDRSH 473

Query: 433 PELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPL 492
           P    +  K++EL  ++K AGYVP+L   L+ V +E KE++L  HSEKLA+AFGLI  P 
Sbjct: 474 PRKEEVFAKVRELSIKIKEAGYVPELSCVLYDVDDEQKEKILQGHSEKLALAFGLICTPG 533

Query: 493 GTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           GTP+R+ KNLR+C DCH   K++S +  RE+ +RD  RFHH   GTCSCGDYW
Sbjct: 534 GTPVRIIKNLRICVDCHNFAKFLSRVYGREVSLRDKNRFHHIVGGTCSCGDYW 586



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 78/236 (33%), Positives = 126/236 (53%), Gaps = 14/236 (5%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI 164
           + +I  Y +C  L  A  +    P ++VV+WTAMISGY + GY     A + L L   M+
Sbjct: 49  TRLIVLYNKCRCLGDARRVLDEMPERNVVSWTAMISGYSQRGY-----ASEALHLFVEML 103

Query: 165 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 224
             G  PN  + ++VL  C+  S  QLG+Q+H LV K+         + L+ MY K G + 
Sbjct: 104 MSGTAPNEFTFATVLTSCTSSSGFQLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKIC 163

Query: 225 DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 284
           +A ++F  +  +DVV+  A+ISGYAQ G  E+AL LF +++ EGM+ + +T+ ++L A +
Sbjct: 164 EARRVFDGLPERDVVSCTAIISGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTALS 223

Query: 285 HAGLVDLGIQYFDSMVNDYGIAAKPDHY----TCMVDLLGRAGKLVEAVDLIKKMP 336
               +D G Q     V+ + + AK   Y      ++D+  + G L  +  +   MP
Sbjct: 224 GLAALDHGRQ-----VHSHVLRAKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMP 274



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 86/170 (50%), Gaps = 1/170 (0%)

Query: 167 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 226
           G+        SVL  C   ++++ G++VH  + K+         T LI +Y KC  L DA
Sbjct: 5   GLEVEFQGYDSVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDA 64

Query: 227 CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHA 286
            ++  E+  ++VV+W AMISGY+Q G   +AL LF +M   G  P+  TF  +L +C  +
Sbjct: 65  RRVLDEMPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSS 124

Query: 287 GLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 336
               LG Q   S+V      +     + ++D+  +AGK+ EA  +   +P
Sbjct: 125 SGFQLGRQ-IHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLP 173



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/185 (29%), Positives = 93/185 (50%), Gaps = 18/185 (9%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCIL-LNSDDVVAAFDFFQRLPIK 68
           +S+L  +AK  GK+ +A+ +FD +P+ DVVS   ++S    L  D+   A D F+RL  +
Sbjct: 150 SSLLDMYAKA-GKICEARRVFDGLPERDVVSCTAIISGYAQLGLDE--EALDLFRRLQRE 206

Query: 69  DT-------ASWNTMISGFVQKKNMAKARDLFL-AMPEKNSVSWSAMISGYIECGQLDKA 120
                    AS  T +SG     +  +     L A      V  +++I  Y +CG L  +
Sbjct: 207 GMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFYVVLQNSLIDMYSKCGSLTYS 266

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLG-IRPNASSLSSVL 179
             +F   P ++V++W AM+ GY K G        + ++L ++M     ++P++ +  +VL
Sbjct: 267 RRIFDSMPERTVISWNAMLVGYSKHGL-----GREAVELFKLMKEENKVKPDSVTFLAVL 321

Query: 180 LGCSH 184
            GCSH
Sbjct: 322 SGCSH 326


>gi|4455294|emb|CAB36829.1| putative protein [Arabidopsis thaliana]
 gi|7268069|emb|CAB78407.1| putative protein [Arabidopsis thaliana]
          Length = 1024

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 214/528 (40%), Positives = 301/528 (57%), Gaps = 45/528 (8%)

Query: 57   AAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----------NSVS--- 103
             A+D   R   KD  SW TMI+G+ Q     KA   F  M ++          N+VS   
Sbjct: 503  TAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACA 562

Query: 104  --------------------------WSAMISGYIECGQLDKAVELFKVAPVKSVVAWTA 137
                                       +A+++ Y  CG+++++   F+       +AW A
Sbjct: 563  GLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNA 622

Query: 138  MISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQL 197
            ++SG+ + G       E+ L++   M   GI  N  +  S +   S  ++++ GKQVH +
Sbjct: 623  LVSGFQQSGN-----NEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAV 677

Query: 198  VFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKA 257
            + K+    +T     LISMY KCG + DA K FLE+  K+ V+WNA+I+ Y++HG G +A
Sbjct: 678  ITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEA 737

Query: 258  LRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVD 317
            L  FD+M    ++P+ +T V +L AC+H GLVD GI YF+SM ++YG++ KP+HY C+VD
Sbjct: 738  LDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVD 797

Query: 318  LLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAG 377
            +L RAG L  A + I++MP KP   ++ TLLSAC VHK +++ EFAA +L  L P ++A 
Sbjct: 798  MLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSA- 856

Query: 378  CYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVS 437
             YV L+N+YA  KKWD     R  MKE  V K PG SWIEV   +H F  GD+ HP    
Sbjct: 857  TYVLLSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSFYVGDQNHPLADE 916

Query: 438  IHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIR 497
            IHE  ++L KR    GYV D    L+ +  E K+ ++  HSEKLAI+FGL+ +P   PI 
Sbjct: 917  IHEYFQDLTKRASEIGYVQDCFSLLNELQHEQKDPIIFIHSEKLAISFGLLSLPATVPIN 976

Query: 498  VFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
            V KNLRVC DCH   K++S +  REIIVRD  RFHHF+ G CSC DYW
Sbjct: 977  VMKNLRVCNDCHAWIKFVSKVSNREIIVRDAYRFHHFEGGACSCKDYW 1024



 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 100/368 (27%), Positives = 161/368 (43%), Gaps = 51/368 (13%)

Query: 6   TVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIM---LSCILLNSDDVVAAFDFF 62
           T+ W  +L G  K  G L + ++L  +I +  + S   +   L    L   D+  AF  F
Sbjct: 46  TLKW--LLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGAFKVF 103

Query: 63  QRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIEC-------- 114
             +P +   +WN MI     +  + +   LF+ M  +N        SG +E         
Sbjct: 104 DEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSVAF 163

Query: 115 --------------------------------GQLDKAVELFKVAPVKSVVAWTAMISGY 142
                                           G +D A  +F    +K   +W AMISG 
Sbjct: 164 DVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGL 223

Query: 143 MKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSP 202
            K     N    + ++L   M  LGI P   + SSVL  C  + SL++G+Q+H LV K  
Sbjct: 224 SK-----NECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLG 278

Query: 203 LCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFD 262
              DT     L+S+Y   G+L  A  +F  + ++D VT+N +I+G +Q G GEKA+ LF 
Sbjct: 279 FSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFK 338

Query: 263 KMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRA 322
           +M  +G++PDS T  +L++AC+  G +  G Q   +     G A+       +++L  + 
Sbjct: 339 RMHLDGLEPDSNTLASLVVACSADGTLFRG-QQLHAYTTKLGFASNNKIEGALLNLYAKC 397

Query: 323 GKLVEAVD 330
             +  A+D
Sbjct: 398 ADIETALD 405



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 85/318 (26%), Positives = 147/318 (46%), Gaps = 19/318 (5%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK----DTASWNTM 76
           G L  A+ +F  + Q D V+YN +++  L        A + F+R+ +     D+ +  ++
Sbjct: 297 GNLISAEHIFSNMSQRDAVTYNTLING-LSQCGYGEKAMELFKRMHLDGLEPDSNTLASL 355

Query: 77  ISGFVQKKNMAKARDLF-----LAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKS 131
           +        + + + L      L     N +   A+++ Y +C  ++ A++ F    V++
Sbjct: 356 VVACSADGTLFRGQQLHAYTTKLGFASNNKIE-GALLNLYAKCADIETALDYFLETEVEN 414

Query: 132 VVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLG 191
           VV W  M+  Y     + NS+     ++ R M    I PN  +  S+L  C  L  L+LG
Sbjct: 415 VVLWNVMLVAYGLLDDLRNSF-----RIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELG 469

Query: 192 KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQH 251
           +Q+H  + K+    +    + LI MY K G L+ A  + +    KDVV+W  MI+GY Q+
Sbjct: 470 EQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQY 529

Query: 252 GKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGI-QYFDSMVNDYGIAAKPD 310
              +KAL  F +M D G++ D +     + AC  AGL  L   Q   +     G ++   
Sbjct: 530 NFDDKALTTFRQMLDRGIRSDEVGLTNAVSAC--AGLQALKEGQQIHAQACVSGFSSDLP 587

Query: 311 HYTCMVDLLGRAGKLVEA 328
               +V L  R GK+ E+
Sbjct: 588 FQNALVTLYSRCGKIEES 605



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 96/368 (26%), Positives = 141/368 (38%), Gaps = 75/368 (20%)

Query: 167 GIRPNASSLSSVLLGCSHLS-SLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLED 225
           GIRPN  +L  +L GC   + SL  G+++H  + K  L  +      L   Y   GDL  
Sbjct: 39  GIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYG 98

Query: 226 ACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN- 284
           A K+F E+  + + TWN MI   A      +   LF +M  E + P+  TF  +L AC  
Sbjct: 99  AFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRG 158

Query: 285 -----------HA------------------------GLVDLGIQYFDSMVNDYGIAAKP 309
                      HA                        G VDL  + FD      G+  K 
Sbjct: 159 GSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFD------GLRLK- 211

Query: 310 DH--YTCMVDLLGRAGKLVEAVDLIKKM---PFKPQPAIFGTLLSACRVHKRLDLAEFAA 364
           DH  +  M+  L +     EA+ L   M      P P  F ++LSAC+  + L++ E   
Sbjct: 212 DHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGE--Q 269

Query: 365 MNLFNLNPANAAGCYV--QLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVV 422
           ++   L    ++  YV   L ++Y  +        I  +M + + V           T++
Sbjct: 270 LHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTY--------NTLI 321

Query: 423 HEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPD------LEFALHAVGEEVKEQLLLF 476
           +                EK  EL KRM L G  PD      L  A  A G   + Q L  
Sbjct: 322 NGLSQ--------CGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHA 373

Query: 477 HSEKLAIA 484
           ++ KL  A
Sbjct: 374 YTTKLGFA 381


>gi|147790932|emb|CAN77232.1| hypothetical protein VITISV_001089 [Vitis vinifera]
          Length = 575

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 227/547 (41%), Positives = 312/547 (57%), Gaps = 24/547 (4%)

Query: 9   WNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCIL----------LNSDDVVAA 58
           W +++ G A  RG  + A   + ++    V       S IL          L+S  V   
Sbjct: 43  WTAIIHGHA-LRGLHEQALNFYAQMLTQGVEPNAFTFSSILKLCPIEPGKALHSQAVKLG 101

Query: 59  FDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLD 118
           FD        D      ++  + +  ++  A+ LF  MPEK+ VS +AM++ Y + G+LD
Sbjct: 102 FD-------SDLYVRTGLLDVYARGGDVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELD 154

Query: 119 KAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSV 178
            A  LF     +  V W  MI GY      +N    + L L R M+    +PN  ++ SV
Sbjct: 155 AARVLFDGMEERDGVCWNVMIDGY-----TQNGMPNEALVLFRRMLKAKAKPNEVTVLSV 209

Query: 179 LLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDV 238
           L  C  L +L+ G+ VH  +  + +  +    T L+ MY KCG LEDA  +F +I  KDV
Sbjct: 210 LSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDV 269

Query: 239 VTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDS 298
           V WN+MI GYA  G  ++AL+LF  M   G+ P +ITF+ +L AC H+G V  G   F+ 
Sbjct: 270 VAWNSMIVGYAMXGFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNK 329

Query: 299 MVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLD 358
           M ++YGI  K +HY CMV+LLGRAG + +A +L+K M  +P P ++GTLL ACR+H ++ 
Sbjct: 330 MKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGKIA 389

Query: 359 LAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEV 418
           L E     L + N AN +G Y+ L+NIYAA+  WD VAR+R  MK++ V K PG S IEV
Sbjct: 390 LGEKIVELLVDQNLAN-SGTYILLSNIYAAVGNWDGVARLRTMMKDSGVKKEPGCSSIEV 448

Query: 419 GTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHS 478
              VHEF +G   HP+   I+  L+E+   +K  GY P  +  LH +GE  KE+ L  HS
Sbjct: 449 NNKVHEFLAGGLNHPKRKEIYMMLEEINGWLKSHGYTPQTDIVLHDIGETEKERSLEVHS 508

Query: 479 EKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGT 538
           EKLAIAFGLI    GT I++ KNLRVC DCH  TK IS I  R+I+VRD  RFHHF +G+
Sbjct: 509 EKLAIAFGLINTQPGTTIKIVKNLRVCADCHEVTKLISKITGRKIVVRDRNRFHHFVNGS 568

Query: 539 CSCGDYW 545
           CSCGDYW
Sbjct: 569 CSCGDYW 575



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 81/296 (27%), Positives = 130/296 (43%), Gaps = 42/296 (14%)

Query: 111 YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRP 170
           Y   G+LD +V LF      SV  WTA+I G+   G  E +     L     M+  G+ P
Sbjct: 19  YASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQA-----LNFYAQMLTQGVEP 73

Query: 171 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 230
           NA + SS+L  C     ++ GK +H    K     D    T L+ +Y + GD+  A +LF
Sbjct: 74  NAFTFSSILKLCP----IEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLF 129

Query: 231 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE---------------GM------ 269
             +  K +V+  AM++ YA+HG+ + A  LFD M++                GM      
Sbjct: 130 DTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALV 189

Query: 270 ----------KPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLL 319
                     KP+ +T +++L AC   G ++ G ++  S + + GI       T +VD+ 
Sbjct: 190 LFRRMLKAKAKPNEVTVLSVLSACGQLGALESG-RWVHSYIENNGIQFNVHVGTALVDMY 248

Query: 320 GRAGKLVEAVDLIKKMPFKPQPAIFGTLLS-ACRVHKRLDLAEFAAMNLFNLNPAN 374
            + G L +A  +  K+  K   A    ++  A     +  L  F +M    L+P N
Sbjct: 249 SKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMXGFSQEALQLFKSMCRMGLHPTN 304



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 78/324 (24%), Positives = 141/324 (43%), Gaps = 29/324 (8%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  K+ V+  ++L  +AK  G+L  A+ LFD + + D V +N+M+     N     A   
Sbjct: 132 MPEKSLVSLTAMLTCYAKH-GELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVL 190

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMA--KARDLFLAMPEKNSVSW-----SAMISGYIE 113
           F + L  K   +  T++S       +   ++     +  E N + +     +A++  Y +
Sbjct: 191 FRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSK 250

Query: 114 CGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNAS 173
           CG L+ A  +F     K VVAW +MI GY   G+     +++ L+L + M  +G+ P   
Sbjct: 251 CGSLEDARLVFDKIDDKDVVAWNSMIVGYAMXGF-----SQEALQLFKSMCRMGLHPTNI 305

Query: 174 SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMY-C------KCGDLEDA 226
           +   +L  C H   +  G  +   +      KD   + P I  Y C      + G +E A
Sbjct: 306 TFIGILSACGHSGWVTEGWDIFNKM------KDEYGIEPKIEHYGCMVNLLGRAGHVEQA 359

Query: 227 CKLFLEIQ-RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNH 285
            +L   +    D V W  ++     HGK     ++ + + D+ +  +S T++ L      
Sbjct: 360 YELVKNMNIEPDPVLWGTLLGACRLHGKIALGEKIVELLVDQNL-ANSGTYILLSNIYAA 418

Query: 286 AGLVDLGIQYFDSMVNDYGIAAKP 309
            G  D G+    +M+ D G+  +P
Sbjct: 419 VGNWD-GVARLRTMMKDSGVKKEP 441



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 74/168 (44%), Gaps = 27/168 (16%)

Query: 205 KDTTALTPLISM---YCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLF 261
           K   A  PL  +   Y   G L+ +  LF   Q   V  W A+I G+A  G  E+AL  +
Sbjct: 4   KKPPAXVPLDKLQRSYASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFY 63

Query: 262 DKMKDEGMKPDSITFVALLLACN-------HAGLVDLGIQYFDSMVNDYGIAAKPDHY-- 312
            +M  +G++P++ TF ++L  C        H+  V LG   FDS           D Y  
Sbjct: 64  AQMLTQGVEPNAFTFSSILKLCPIEPGKALHSQAVKLG---FDS-----------DLYVR 109

Query: 313 TCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLA 360
           T ++D+  R G +V A  L   MP K   ++   L    + H  LD A
Sbjct: 110 TGLLDVYARGGDVVSAQQLFDTMPEKSLVSLTAMLTCYAK-HGELDAA 156


>gi|297822703|ref|XP_002879234.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297325073|gb|EFH55493.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 740

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 218/551 (39%), Positives = 319/551 (57%), Gaps = 16/551 (2%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCIL--------LNSDDV 55
           K  V+WNS++ GF  Q+G    A ELF K+   DV + ++ +  +L        L     
Sbjct: 197 KDVVSWNSMINGFV-QKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRDLEFGRR 255

Query: 56  VAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECG 115
           V ++    R+ +  T + N M+  + +  ++  A+ LF AM EK++V+W+ M+ GY    
Sbjct: 256 VCSYIEENRVNVNLTLA-NAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISE 314

Query: 116 QLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSL 175
             + A E+    P K +VAW A+IS Y + G       E  L    + +   I+ N  +L
Sbjct: 315 DYEAAREVLNAMPKKDIVAWNALISAYEQNGKPN----EALLVFHELQLQKNIKLNQITL 370

Query: 176 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR 235
            S L  C+ + +L+LG+ +H  + K+ +  +    + LI MY KCGDLE A ++F  +++
Sbjct: 371 VSTLSACAQVGALELGRWIHSYIKKNGIKMNFYVTSALIHMYSKCGDLEKAREVFNSVEK 430

Query: 236 KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQY 295
           +DV  W+AMI G A HG G +A+ +F KM++  +KP+ +TF  +  AC+H GLVD     
Sbjct: 431 RDVFVWSAMIGGLAMHGCGSEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESL 490

Query: 296 FDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHK 355
           F  M + YGI  +  HY C+VD+LGR+G L +AV  I+ MP  P  +++G LL AC++H 
Sbjct: 491 FYKMESSYGIVPEDKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHA 550

Query: 356 RLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSW 415
            L LAE A   L  L P N  G +V L+NIYA   KWD+V+ +R  M+   + K PG S 
Sbjct: 551 NLSLAEMACTRLLELEPRN-DGAHVLLSNIYAKSGKWDNVSELRKHMRVTGLKKEPGCSS 609

Query: 416 IEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAV-GEEVKEQLL 474
           IE+  ++HEF SGD  HP    ++ KL E+ +++K  GY P++   L  +  EE+KEQ L
Sbjct: 610 IEIDGMIHEFLSGDNAHPMSEKVYGKLHEVMEKLKSNGYEPEMSHVLQIIEEEEMKEQSL 669

Query: 475 LFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHF 534
             HSEKLAI +GLI       IRV KNLR+CGDCH   K IS +  REIIVRD  RFHHF
Sbjct: 670 NLHSEKLAICYGLISTEAPKAIRVIKNLRMCGDCHAVAKLISQLYNREIIVRDRYRFHHF 729

Query: 535 KDGTCSCGDYW 545
           ++G CSC D+W
Sbjct: 730 RNGQCSCNDFW 740



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 104/427 (24%), Positives = 185/427 (43%), Gaps = 87/427 (20%)

Query: 11  SVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDT 70
           + L+ FA     L+ A+++FD+IPQP+  ++N ++       D V + + F   +  +  
Sbjct: 73  AALSSFAS----LEYARKVFDEIPQPNSFTWNTLIRAYASGPDPVCSIWAFLDMVSSESQ 128

Query: 71  ASWNTMISGFVQKKNMAKARDLFL-----AMPEKNSVS-----WSAMISGYIECGQLDKA 120
              N     F+ K   A+   L L      M  K++V       +++I  Y  CG LD A
Sbjct: 129 CYPNKYTFPFLIKA-AAEVSSLSLGQSLHGMAIKSAVGSDVFVANSLIHCYFSCGDLDSA 187

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLL 180
            ++F     K VV+W +MI+G+++ G       +  L+L + M    ++ +  ++  VL 
Sbjct: 188 CKVFTTIKEKDVVSWNSMINGFVQKGS-----PDKALELFKKMESEDVKASHVTMVGVLS 242

Query: 181 GCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ------ 234
            C+ +  L+ G++V   + ++ +  + T    ++ MY KCG +EDA +LF  ++      
Sbjct: 243 ACAKIRDLEFGRRVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVT 302

Query: 235 -------------------------RKDVVTWNAMISGYAQHGKGEKALRLFDKMK-DEG 268
                                    +KD+V WNA+IS Y Q+GK  +AL +F +++  + 
Sbjct: 303 WTTMLDGYAISEDYEAAREVLNAMPKKDIVAWNALISAYEQNGKPNEALLVFHELQLQKN 362

Query: 269 MKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKL--- 325
           +K + IT V+ L AC   G ++LG ++  S +   GI       + ++ +  + G L   
Sbjct: 363 IKLNQITLVSTLSACAQVGALELG-RWIHSYIKKNGIKMNFYVTSALIHMYSKCGDLEKA 421

Query: 326 ----------------------------VEAVDLIKKMP---FKPQPAIFGTLLSACRVH 354
                                        EAVD+  KM     KP    F  +  AC   
Sbjct: 422 REVFNSVEKRDVFVWSAMIGGLAMHGCGSEAVDMFYKMQEANVKPNGVTFTNVFCACSHT 481

Query: 355 KRLDLAE 361
             +D AE
Sbjct: 482 GLVDEAE 488


>gi|302815813|ref|XP_002989587.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
 gi|300142765|gb|EFJ09463.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
          Length = 736

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 227/625 (36%), Positives = 334/625 (53%), Gaps = 88/625 (14%)

Query: 1   MNVKTTVNWNSVLAGFAK---QRGKLKDAQELFDKIPQ---PDVVSYNIML-SCILLN-- 51
           M  KT V WN+++AG+++    RG LK  Q++  K P+   PD ++++  L +C ++   
Sbjct: 120 MGKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVGDI 179

Query: 52  ----------------SDDVV---------------AAFDFFQRLPIKDTASWNTMISGF 80
                           SD +V               +A   F RL  +D  +WNTMISG+
Sbjct: 180 SQGREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGY 239

Query: 81  VQKKNMAKARDLFLAM----PEKNSVSWSAMISG-------------------------- 110
            ++    +A +LF  M    P+ N V++  +++                           
Sbjct: 240 AKQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVREDGYESDL 299

Query: 111 ---------YIECGQ-LDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLL 160
                    Y +C   L++A ++F+    + V+ W  +I  Y+++G      A+D L + 
Sbjct: 300 VIGNVLLNMYTKCSSSLEEARQVFERMRTRDVITWNILIVAYVQYGQ-----AKDALDIF 354

Query: 161 RMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKC 220
           + M    + PN  +LS+VL  C+ L + + GK VH L+       D      L++MY +C
Sbjct: 355 KQMQLENVAPNEITLSNVLSACAVLGAKRQGKAVHALIASGRCKADVVLENSLMNMYNRC 414

Query: 221 GDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 280
           G L+D   +F  I+ K +V+W+ +I+ YAQHG     L  F ++  EG+  D +T V+ L
Sbjct: 415 GSLDDTVGVFAAIRDKSLVSWSTLIAAYAQHGHSRTGLEHFWELLQEGLAADDVTMVSTL 474

Query: 281 LACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQ 340
            AC+H G++  G+Q F SMV D+G+A    H+ CMVDLL RAG+L  A +LI  MPF P 
Sbjct: 475 SACSHGGMLKEGVQTFLSMVGDHGLAPDYRHFLCMVDLLSRAGRLEAAENLIHDMPFLPD 534

Query: 341 PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRL 400
              + +LLS C++H     A   A  LF L   +       L+N+YA   +WDDV + R 
Sbjct: 535 AVAWTSLLSGCKLHNDTKRAARVADKLFELESEDEHSTVTLLSNVYAEAGRWDDVRKTR- 593

Query: 401 SMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEF 460
                   K PG S+IE+   VHEF +GD+ HPE   I  ++K L K+MK AGYVPD+  
Sbjct: 594 --NRRAARKNPGCSYIEINDTVHEFVAGDKSHPEEELIAAEIKRLSKQMKDAGYVPDMRM 651

Query: 461 ALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEK 520
            LH V EE KEQ+L +HSEKLAIA+GLI  P GTP+ + KNLR C DCH A K+IS I  
Sbjct: 652 VLHNVKEEEKEQMLCYHSEKLAIAYGLISTPPGTPLHIVKNLRACVDCHAAAKFISRIVG 711

Query: 521 REIIVRDTTRFHHFKDGTCSCGDYW 545
           R+I+VRD+TRFHHF++G+CSC DYW
Sbjct: 712 RKIVVRDSTRFHHFENGSCSCKDYW 736



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 81/277 (29%), Positives = 140/277 (50%), Gaps = 18/277 (6%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK----DTASWNTM 76
           G + DA  +F  I  P+ VS+ ++++    N      A  +++R+ ++    D A +   
Sbjct: 6   GSVADALAVFHAIEHPNSVSWTLIVAAFARNGH-YREALGYYRRMVLEGLRPDGAMFVVA 64

Query: 77  ISGFVQKKNMAKARDLFLAMPEKNSVSW-----SAMISGYIECGQLDKAVELFKVAPVKS 131
           I      K++ + + L   + E   + +     +A+I+ Y  C  L+ A + F     K+
Sbjct: 65  IGVCSSSKDLKQGQLLHAMILETRLLEFDIILGTALITMYARCRDLELARKTFDEMGKKT 124

Query: 132 VVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGL---GIRPNASSLSSVLLGCSHLSSL 188
           +V W A+I+GY +     N      LK+ + M+     G++P+A + SS L  C+ +  +
Sbjct: 125 LVTWNALIAGYSR-----NGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVGDI 179

Query: 189 QLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGY 248
             G+++      S    D+     LI+MY KCG LE A K+F  ++ +DV+ WN MISGY
Sbjct: 180 SQGREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGY 239

Query: 249 AQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNH 285
           A+ G   +AL LF +M     KP+ +TF+ LL AC +
Sbjct: 240 AKQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTN 276



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 80/283 (28%), Positives = 135/283 (47%), Gaps = 52/283 (18%)

Query: 111 YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRP 170
           Y +CG +  A+ +F      + V+WT +++ + + G+       + L   R M+  G+RP
Sbjct: 2   YGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYR-----EALGYYRRMVLEGLRP 56

Query: 171 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCK-DTTALTPLISMYCKCGDLEDACKL 229
           + +     +  CS    L+ G+ +H ++ ++ L + D    T LI+MY +C DLE A K 
Sbjct: 57  DGAMFVVAIGVCSSSKDLKQGQLLHAMILETRLLEFDIILGTALITMYARCRDLELARKT 116

Query: 230 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKM---KDEGMKPDSITFVALLLACNHA 286
           F E+ +K +VTWNA+I+GY+++G    AL+++  M     EGMKPD+ITF + L AC   
Sbjct: 117 FDEMGKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVV 176

Query: 287 GLVDLGIQ-----------------------------------YFDSMVNDYGIAAKPDH 311
           G +  G +                                    FD + N   IA     
Sbjct: 177 GDISQGREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIA----- 231

Query: 312 YTCMVDLLGRAGKLVEAVDLIKKM-PFKPQPAI--FGTLLSAC 351
           +  M+    + G   +A++L ++M P  P+P +  F  LL+AC
Sbjct: 232 WNTMISGYAKQGAATQALELFQRMGPNDPKPNVVTFIGLLTAC 274



 Score = 55.5 bits (132), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 51/232 (21%), Positives = 96/232 (41%), Gaps = 41/232 (17%)

Query: 216 MYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSIT 275
           MY KCG + DA  +F  I+  + V+W  +++ +A++G   +AL  + +M  EG++PD   
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAM 60

Query: 276 FVALLLACN-----------HAGLVDLGIQYFD-----SMVNDYGIAAKPDHYTCMVDLL 319
           FV  +  C+           HA +++  +  FD     +++  Y      +      D +
Sbjct: 61  FVVAIGVCSSSKDLKQGQLLHAMILETRLLEFDIILGTALITMYARCRDLELARKTFDEM 120

Query: 320 GRA-------------------GKLVEAVDLIKKMP--FKPQPAIFGTLLSACRVHKRLD 358
           G+                    G L    D++ K P   KP    F + L AC V    D
Sbjct: 121 GKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVG--D 178

Query: 359 LAEFAAMNLFNLNPANAAGCYVQ--LANIYAAMKKWDDVARIRLSMKENNVV 408
           +++   +    +    A+   VQ  L N+Y+     +   ++   +K  +V+
Sbjct: 179 ISQGREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVI 230


>gi|414884091|tpg|DAA60105.1| TPA: hypothetical protein ZEAMMB73_697281 [Zea mays]
          Length = 734

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 220/578 (38%), Positives = 321/578 (55%), Gaps = 50/578 (8%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
           N+VL  +AK  G    A+  F  + Q D  S+NI++   L + D +V A   F    ++D
Sbjct: 165 NAVLDMYAKC-GDHGRARRAFGAMAQKDATSWNIVIRACLQDGD-LVGATQLFDESSLRD 222

Query: 70  TASWNTMISGFVQKKNMAKA-------------------------------RDL------ 92
            +SWNT++SG ++  +  +A                               RDL      
Sbjct: 223 VSSWNTIVSGLMRHGHTTEALGRLQQMVRAGVTFSNYTYSMVFALAGLLSSRDLGRQLHG 282

Query: 93  --FLAMPEKNSVSWSAMISGYIECGQLDKAVELFKV---APVKSVVAWTAMISGYMKFGY 147
              +A+ E+++    +++  Y +CG+++ A+ +F            AW+ M++GY     
Sbjct: 283 RVVVAVLEEDAFVGCSLMDMYCKCGEMESALSIFDRWSDFTEDRQFAWSTMVAGY----- 337

Query: 148 VENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDT 207
           V+N   E+ L+  R M+  G+      L+SV   C++   ++ G+QVH  V K     D 
Sbjct: 338 VQNGREEEALEFFRRMLREGVPAGQFILTSVASACANAGMVEQGRQVHGFVEKLGHRFDA 397

Query: 208 TALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE 267
              + ++ MY K G LEDAC++F   Q K+V  W  M+  YA HG+G  AL +F +MK E
Sbjct: 398 PLASAIVDMYSKSGSLEDACRIFRSAQTKNVALWTTMLCSYASHGQGRMALEIFSRMKAE 457

Query: 268 GMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVE 327
            + P+ IT VA+L AC+H+GLV  G  YF+ M  +YGI    +HY CMVDL GRAG L +
Sbjct: 458 KIMPNEITLVAVLSACSHSGLVSDGYHYFNLMQEEYGIVPNTEHYNCMVDLYGRAGLLDK 517

Query: 328 AVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYA 387
           A + I++     +  ++ TLLSACR+HK ++ A+ A+  L  L   +A G YV ++N+YA
Sbjct: 518 AKNFIEENKISHEAVVWKTLLSACRLHKHIEYAQLASEKLVQLEQYDA-GSYVLMSNMYA 576

Query: 388 AMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEK 447
              KW D  ++R SMKE  V K PG SWI +  VVH F + D  HP    I+  L++L +
Sbjct: 577 TNNKWLDTFKLRSSMKERRVRKQPGQSWIHLKNVVHRFVALDTSHPRSAEIYAYLEKLME 636

Query: 448 RMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGD 507
           R+K  GY    +  +H + EE +E  L FHSEKLAIAFG+I  P+GT +R+FKNLRVC D
Sbjct: 637 RLKEMGYTSRTDLVVHDIEEEQRETSLKFHSEKLAIAFGIISTPVGTALRIFKNLRVCED 696

Query: 508 CHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           CH A K+I+    REI+VRD  RFHHFKDG CSC D+W
Sbjct: 697 CHEAIKFITRATDREIVVRDLYRFHHFKDGQCSCEDFW 734



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 97/378 (25%), Positives = 176/378 (46%), Gaps = 22/378 (5%)

Query: 9   WNSVLAGFAKQRGKLKDAQELFDKI------PQPDVVSYNIMLSCI--LLNSDDVVAAFD 60
           W S+++G A++ G+  D    F ++        P+      +L C   L + +       
Sbjct: 92  WTSIISGCARE-GRHADGMRAFAEMLDECGATAPNAFVLAGVLRCCAGLGDVESGRRIHG 150

Query: 61  FFQRLPI-KDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDK 119
           +  R  +  D    N ++  + +  +  +AR  F AM +K++ SW+ +I   ++ G L  
Sbjct: 151 WILRSGVCPDVVLCNAVLDMYAKCGDHGRARRAFGAMAQKDATSWNIVIRACLQDGDLVG 210

Query: 120 AVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVL 179
           A +LF  + ++ V +W  ++SG M+ G+       + L  L+ M+  G+  +  + S V 
Sbjct: 211 ATQLFDESSLRDVSSWNTIVSGLMRHGHT-----TEALGRLQQMVRAGVTFSNYTYSMVF 265

Query: 180 LGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF---LEIQRK 236
                LSS  LG+Q+H  V  + L +D      L+ MYCKCG++E A  +F    +    
Sbjct: 266 ALAGLLSSRDLGRQLHGRVVVAVLEEDAFVGCSLMDMYCKCGEMESALSIFDRWSDFTED 325

Query: 237 DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYF 296
               W+ M++GY Q+G+ E+AL  F +M  EG+        ++  AC +AG+V+ G Q  
Sbjct: 326 RQFAWSTMVAGYVQNGREEEALEFFRRMLREGVPAGQFILTSVASACANAGMVEQGRQ-V 384

Query: 297 DSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVH-- 354
              V   G        + +VD+  ++G L +A  + +    K   A++ T+L +   H  
Sbjct: 385 HGFVEKLGHRFDAPLASAIVDMYSKSGSLEDACRIFRSAQTK-NVALWTTMLCSYASHGQ 443

Query: 355 KRLDLAEFAAMNLFNLNP 372
            R+ L  F+ M    + P
Sbjct: 444 GRMALEIFSRMKAEKIMP 461



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 75/149 (50%), Gaps = 7/149 (4%)

Query: 117 LDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGL--GIRPNASS 174
           L  A  +F   P +S+ AWT++ISG  + G        DG++    M+       PNA  
Sbjct: 74  LHNAHRVFDGTPTRSLPAWTSIISGCAREGR-----HADGMRAFAEMLDECGATAPNAFV 128

Query: 175 LSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ 234
           L+ VL  C+ L  ++ G+++H  + +S +C D      ++ MY KCGD   A + F  + 
Sbjct: 129 LAGVLRCCAGLGDVESGRRIHGWILRSGVCPDVVLCNAVLDMYAKCGDHGRARRAFGAMA 188

Query: 235 RKDVVTWNAMISGYAQHGKGEKALRLFDK 263
           +KD  +WN +I    Q G    A +LFD+
Sbjct: 189 QKDATSWNIVIRACLQDGDLVGATQLFDE 217


>gi|449437256|ref|XP_004136408.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 632

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 206/473 (43%), Positives = 294/473 (62%), Gaps = 7/473 (1%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVV 133
           N+++  + +      A+ LF  M  ++ VSW+ +ISGY   G +DKA  +F     K++V
Sbjct: 166 NSLVDLYFKVGCNCIAQKLFDEMVVRDVVSWNTLISGYCFSGMVDKARMVFDGMMEKNLV 225

Query: 134 AWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLG-IRPNASSLSSVLLGCSHLSSLQLGK 192
           +W+ MISGY +     N    D ++L R M   G + PN  +L SVL  C+HL +L LGK
Sbjct: 226 SWSTMISGYAR-----NEKYADAIELFRQMQHEGGLAPNDVTLVSVLSACAHLGALDLGK 280

Query: 193 QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHG 252
            +H+ + ++ +         L  MY KCG + +A  +F E+  +DV++W+ +I G A +G
Sbjct: 281 WIHRFIRRNKIEVGLFLGNALADMYAKCGCVLEAKGVFHEMHERDVISWSIIIMGLAMYG 340

Query: 253 KGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY 312
              +A   F +M ++G++P+ I+F+ LL AC HAGLVD G++YFD M   YGI  K +HY
Sbjct: 341 YANEAFNFFAEMIEDGLEPNDISFMGLLTACTHAGLVDKGLEYFDMMPQVYGITPKIEHY 400

Query: 313 TCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNP 372
            C+VDLL RAG+L +A  LI  MP +P   ++G LL  CR++K  +  E     +  L+ 
Sbjct: 401 GCVVDLLSRAGRLDQAESLINSMPMQPNVIVWGALLGGCRIYKDAERGERVVWRILELD- 459

Query: 373 ANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVH 432
           +N +G  V LAN+YA+M + DD A  RL M++N  +K PG SWIE+   V+EF  GD  H
Sbjct: 460 SNHSGSLVYLANVYASMGRLDDAASCRLRMRDNKSMKTPGCSWIEINNSVYEFFMGDSSH 519

Query: 433 PELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPL 492
           P+ + I+  ++EL+ +MK+AGY P  +  +H + EE KE  L  HSEKLA+AFGLI    
Sbjct: 520 PQSLRIYSMIRELKWKMKVAGYKPKTDLVIHNIDEEEKEDALSTHSEKLALAFGLINTSE 579

Query: 493 GTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           GT IR+ KNLRVC DCH A K IS I +REI+VRD +RFHHFKDG CSC DYW
Sbjct: 580 GTTIRIVKNLRVCNDCHDAIKIISKIVEREIVVRDRSRFHHFKDGKCSCNDYW 632



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 55/198 (27%), Positives = 90/198 (45%), Gaps = 33/198 (16%)

Query: 170 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 229
           P+  + +SVL  C+ L+ +  G++VH  V K     +      L+ +Y K G    A KL
Sbjct: 125 PDEYTFTSVLKACAGLAQVLEGQKVHCFVTKYGCESNLFVRNSLVDLYFKVGCNCIAQKL 184

Query: 230 FLEIQRKDVVTWNA-------------------------------MISGYAQHGKGEKAL 258
           F E+  +DVV+WN                                MISGYA++ K   A+
Sbjct: 185 FDEMVVRDVVSWNTLISGYCFSGMVDKARMVFDGMMEKNLVSWSTMISGYARNEKYADAI 244

Query: 259 RLFDKMKDE-GMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVD 317
            LF +M+ E G+ P+ +T V++L AC H G +DLG ++    +    I         + D
Sbjct: 245 ELFRQMQHEGGLAPNDVTLVSVLSACAHLGALDLG-KWIHRFIRRNKIEVGLFLGNALAD 303

Query: 318 LLGRAGKLVEAVDLIKKM 335
           +  + G ++EA  +  +M
Sbjct: 304 MYAKCGCVLEAKGVFHEM 321



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 67/285 (23%), Positives = 114/285 (40%), Gaps = 64/285 (22%)

Query: 26  AQELFDKIPQPDVVSYNIMLS--CILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQK 83
           AQ+LFD++   DVVS+N ++S  C     D     FD       K+  SW+TMISG+ + 
Sbjct: 181 AQKLFDEMVVRDVVSWNTLISGYCFSGMVDKARMVFDGMME---KNLVSWSTMISGYARN 237

Query: 84  KNMAKARDLFLAMPEK-----NSVSWSAMISG---------------------------- 110
           +  A A +LF  M  +     N V+  +++S                             
Sbjct: 238 EKYADAIELFRQMQHEGGLAPNDVTLVSVLSACAHLGALDLGKWIHRFIRRNKIEVGLFL 297

Query: 111 -------YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMM 163
                  Y +CG + +A  +F     + V++W+ +I G   +GY     A +       M
Sbjct: 298 GNALADMYAKCGCVLEAKGVFHEMHERDVISWSIIIMGLAMYGY-----ANEAFNFFAEM 352

Query: 164 IGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMY------ 217
           I  G+ PN  S   +L  C+H   +  G +   ++           +TP I  Y      
Sbjct: 353 IEDGLEPNDISFMGLLTACTHAGLVDKGLEYFDMM------PQVYGITPKIEHYGCVVDL 406

Query: 218 -CKCGDLEDACKLFLEI-QRKDVVTWNAMISGYAQHGKGEKALRL 260
             + G L+ A  L   +  + +V+ W A++ G   +   E+  R+
Sbjct: 407 LSRAGRLDQAESLINSMPMQPNVIVWGALLGGCRIYKDAERGERV 451


>gi|147771387|emb|CAN76239.1| hypothetical protein VITISV_016538 [Vitis vinifera]
          Length = 503

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 200/441 (45%), Positives = 280/441 (63%), Gaps = 6/441 (1%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI 164
           S ++  YI+CG +  A  +F        VAWT+MISG      V+N   +  L++   M 
Sbjct: 69  SGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGC-----VDNGNEDQALRIYHRMR 123

Query: 165 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 224
              + P+  + ++++   S +++L+ G+Q+H  V K     D    T L+ MY KCG++E
Sbjct: 124 QSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVGTSLVDMYAKCGNIE 183

Query: 225 DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 284
           DA +LF ++  +++  WNAM+ G AQHG  E+A+ LF  MK  G++PD ++F+ +L AC+
Sbjct: 184 DAYRLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACS 243

Query: 285 HAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIF 344
           HAGL     +Y  SM NDYGI  + +HY+C+VD LGRAG + EA  +I+ MPFK   +I 
Sbjct: 244 HAGLTSEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAGLVQEADKVIETMPFKASASIN 303

Query: 345 GTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKE 404
             LL ACR+   ++  +  A  LF L P ++A  YV L+NIYAA  +WDDV   R  MK 
Sbjct: 304 RALLGACRIQGDVEXGKRVAARLFALEPFDSAA-YVLLSNIYAAANRWDDVTDARKMMKR 362

Query: 405 NNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHA 464
            NV K PG+SWI+V  ++H F   DR HP+   I++K++E+ K ++  GYVPD EF L  
Sbjct: 363 KNVKKDPGFSWIDVKNMLHLFVVDDRSHPQADIIYDKVEEMMKTIREDGYVPDTEFVLLD 422

Query: 465 VGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREII 524
           V +E KE+ L +HSEKLAIA+GLI  P  T IRV KNLRVCGDCH A KYIS + +REI+
Sbjct: 423 VEDEEKERSLYYHSEKLAIAYGLISTPASTTIRVIKNLRVCGDCHNAIKYISKVFEREIV 482

Query: 525 VRDTTRFHHFKDGTCSCGDYW 545
           +RD  RFHHF+DG CSCGDYW
Sbjct: 483 LRDANRFHHFRDGVCSCGDYW 503



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 63/226 (27%), Positives = 110/226 (48%), Gaps = 6/226 (2%)

Query: 143 MKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSP 202
           M FGY+  +  +  L+L  ++   G + +  +L++    C  L  L  GKQ+H    K+ 
Sbjct: 1   MMFGYIIGNDGKKALELFSLIHKSGEKSDQITLATAAKACGCLVLLDQGKQIHAHAIKAG 60

Query: 203 LCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFD 262
              D    + ++ MY KCGD+ +A  +F  I   D V W +MISG   +G  ++ALR++ 
Sbjct: 61  FDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYH 120

Query: 263 KMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRA 322
           +M+   + PD  TF  L+ A +    ++ G Q   +++      + P   T +VD+  + 
Sbjct: 121 RMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIK-LDCVSDPFVGTSLVDMYAKC 179

Query: 323 GKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLF 368
           G + +A  L KKM  +   A++  +L     H   +     A+NLF
Sbjct: 180 GNIEDAYRLFKKMNVR-NIALWNAMLVGLAQHGNAE----EAVNLF 220



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 50/206 (24%), Positives = 94/206 (45%), Gaps = 22/206 (10%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLS-CILLNSDDVVAAFDFFQRLP----IKDTASWNT 75
           G + +A  +F+ I  PD V++  M+S C+   ++D   A   + R+     + D  ++ T
Sbjct: 79  GDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNED--QALRIYHRMRQSRVMPDEYTFAT 136

Query: 76  MISGFVQKKNMAKARDLFLAMPEKNSVS----WSAMISGYIECGQLDKAVELFKVAPVKS 131
           +I        + + R L   + + + VS     ++++  Y +CG ++ A  LFK   V++
Sbjct: 137 LIKASSCVTALEQGRQLHANVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKMNVRN 196

Query: 132 VVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLG 191
           +  W AM+ G  + G      AE+ + L + M   GI P+  S   +L  CSH     L 
Sbjct: 197 IALWNAMLVGLAQHGN-----AEEAVNLFKSMKSHGIEPDRVSFIGILSACSHAG---LT 248

Query: 192 KQVHQLVFKSPLCKDTTALTPLISMY 217
            + ++ +   P   +   + P I  Y
Sbjct: 249 SEAYEYLHSMP---NDYGIEPEIEHY 271



 Score = 45.1 bits (105), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 42/191 (21%), Positives = 83/191 (43%), Gaps = 20/191 (10%)

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMISGYIE 113
           A+  F+++ +++ A WN M+ G  Q  N  +A +LF +M     E + VS+  ++S    
Sbjct: 185 AYRLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACSH 244

Query: 114 CGQLDKAVELFKVAPVK-----SVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGI 168
            G   +A E     P        +  ++ ++    + G V     ++  K++  M     
Sbjct: 245 AGLTSEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAGLV-----QEADKVIETM---PF 296

Query: 169 RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK-SPLCKDTTALTPLISMYCKCGDLEDAC 227
           + +AS   ++L  C     ++ GK+V   +F   P   D+ A   L ++Y      +D  
Sbjct: 297 KASASINRALLGACRIQGDVEXGKRVAARLFALEPF--DSAAYVLLSNIYAAANRWDDVT 354

Query: 228 KLFLEIQRKDV 238
                ++RK+V
Sbjct: 355 DARKMMKRKNV 365


>gi|359481919|ref|XP_003632692.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At3g13770, mitochondrial-like [Vitis vinifera]
          Length = 1053

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 217/533 (40%), Positives = 319/533 (59%), Gaps = 17/533 (3%)

Query: 23   LKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTA----SWNTMIS 78
            L DA+ + D++P+ +VVS+  M+S           A   F  + +  TA    ++ T+++
Sbjct: 528  LGDARRVLDEMPERNVVSWTAMISG-YSQRGYASEALHLFVEMLMSGTAPNEFTFATVLT 586

Query: 79   GFVQKKNMAKARDLFLAMP----EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVA 134
                       R +   +     E +    S+++  Y + G++ +A  +F   P + VV+
Sbjct: 587  SCTSSSGFQLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVS 646

Query: 135  WTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQV 194
             TA+ISGY + G       E+ L L R +   G+R N  + +SVL   S L++L  G+QV
Sbjct: 647  CTAIISGYAQLGL-----DEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQV 701

Query: 195  HQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKG 254
            H  V ++ L         LI MY KCG L  + ++F  +  + V++WNAM+ GY++HG G
Sbjct: 702  HSHVLRAKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLG 761

Query: 255  EKALRLFDKMKDEG-MKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDY-GIAAKPDHY 312
             +A+ LF  MK+E  +KPDS+TF+A+L  C+H G+ D G++ F  MVN   G   + +HY
Sbjct: 762  REAVELFKLMKEENKVKPDSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHY 821

Query: 313  TCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNP 372
             C+VDL GRAG++ EA + IKKMPF+P  AI+G+LL ACRVH+ + + EF A  L  +  
Sbjct: 822  GCVVDLFGRAGRVEEAFEFIKKMPFEPTAAIWGSLLGACRVHQNVHIGEFVARRLLEIES 881

Query: 373  ANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVH 432
             NA G YV L+N+YA+  +WDDV  +R  MKE  V+K PG SWIE+   +H F + DR H
Sbjct: 882  ENA-GNYVILSNLYASAGRWDDVRTVRELMKEKAVIKEPGRSWIELDQTLHTFHASDRSH 940

Query: 433  PELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPL 492
            P    +  K++EL  ++K AGYVP+L   L+ V +E KE++L  HSEKLA+AFGLI  P 
Sbjct: 941  PRKEEVFAKVRELSIKIKEAGYVPELSCVLYDVDDEQKEKILQGHSEKLALAFGLICTPG 1000

Query: 493  GTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
            GTP+R+ KNLR+C DCH   K++S +  RE+ +RD  RFHH   GTCSCGDYW
Sbjct: 1001 GTPVRIIKNLRICVDCHNFAKFLSRVYGREVSLRDKNRFHHIVGGTCSCGDYW 1053



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 78/236 (33%), Positives = 126/236 (53%), Gaps = 14/236 (5%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI 164
           + +I  Y +C  L  A  +    P ++VV+WTAMISGY + GY     A + L L   M+
Sbjct: 516 TRLIVLYNKCRCLGDARRVLDEMPERNVVSWTAMISGYSQRGY-----ASEALHLFVEML 570

Query: 165 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 224
             G  PN  + ++VL  C+  S  QLG+Q+H LV K+         + L+ MY K G + 
Sbjct: 571 MSGTAPNEFTFATVLTSCTSSSGFQLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKIC 630

Query: 225 DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 284
           +A ++F  +  +DVV+  A+ISGYAQ G  E+AL LF +++ EGM+ + +T+ ++L A +
Sbjct: 631 EARRVFDGLPERDVVSCTAIISGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTALS 690

Query: 285 HAGLVDLGIQYFDSMVNDYGIAAKPDHY----TCMVDLLGRAGKLVEAVDLIKKMP 336
               +D G Q     V+ + + AK   Y      ++D+  + G L  +  +   MP
Sbjct: 691 GLAALDHGRQ-----VHSHVLRAKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMP 741



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/178 (32%), Positives = 90/178 (50%), Gaps = 2/178 (1%)

Query: 159 LLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYC 218
           LL M I  G+        SVL  C   ++++ G++VH  + K+         T LI +Y 
Sbjct: 465 LLEMGIQ-GLEVEFQGYDSVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYN 523

Query: 219 KCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVA 278
           KC  L DA ++  E+  ++VV+W AMISGY+Q G   +AL LF +M   G  P+  TF  
Sbjct: 524 KCRCLGDARRVLDEMPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFAT 583

Query: 279 LLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 336
           +L +C  +    LG Q   S+V      +     + ++D+  +AGK+ EA  +   +P
Sbjct: 584 VLTSCTSSSGFQLGRQ-IHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLP 640



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 54/185 (29%), Positives = 93/185 (50%), Gaps = 18/185 (9%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCIL-LNSDDVVAAFDFFQRLPIK 68
           +S+L  +AK  GK+ +A+ +FD +P+ DVVS   ++S    L  D+   A D F+RL  +
Sbjct: 617 SSLLDMYAKA-GKICEARRVFDGLPERDVVSCTAIISGYAQLGLDE--EALDLFRRLQRE 673

Query: 69  DT-------ASWNTMISGFVQKKNMAKARDLFL-AMPEKNSVSWSAMISGYIECGQLDKA 120
                    AS  T +SG     +  +     L A      V  +++I  Y +CG L  +
Sbjct: 674 GMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFYVVLQNSLIDMYSKCGSLTYS 733

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLG-IRPNASSLSSVL 179
             +F   P ++V++W AM+ GY K G        + ++L ++M     ++P++ +  +VL
Sbjct: 734 RRIFDSMPERTVISWNAMLVGYSKHGL-----GREAVELFKLMKEENKVKPDSVTFLAVL 788

Query: 180 LGCSH 184
            GCSH
Sbjct: 789 SGCSH 793


>gi|297838665|ref|XP_002887214.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297333055|gb|EFH63473.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 740

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 225/564 (39%), Positives = 321/564 (56%), Gaps = 47/564 (8%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G + DA+++F  +   + V YN ++   LL    +  A   F+ +  KD+ SW+ MI G 
Sbjct: 185 GCISDAKKVFYGLDDRNTVMYNTLMGG-LLACGMIEDALQLFRGME-KDSVSWSAMIKGL 242

Query: 81  VQKKNMAKARDLFLAMP---------------------------------------EKNS 101
            Q     +A + F  M                                        + + 
Sbjct: 243 AQNGMEKEAIECFREMKIEGLKMDQYPFGSVLPACGGLGAINDGRQIHACIIRTNLQDHI 302

Query: 102 VSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLR 161
              SA+I  Y +C  L  A  +F     K+VV+WTAM+ GY + G      A + +K+  
Sbjct: 303 YVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGR-----AGEAVKIFL 357

Query: 162 MMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCG 221
            M   GI P+  +L   +  C+++SSL+ G Q H     + L    T    L+++Y KCG
Sbjct: 358 DMQRSGIDPDHYTLGQAISACANISSLEEGSQFHGKAITAGLIHYITVSNSLVTLYGKCG 417

Query: 222 DLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLL 281
           D++D+ +LF E+  +D V+W AM+S YAQ G+  +A++LFDKM   G+KPD +T   ++ 
Sbjct: 418 DIDDSTRLFNEMNVRDEVSWTAMVSAYAQFGRAVEAIQLFDKMVQLGLKPDGVTLTGVIS 477

Query: 282 ACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQP 341
           AC+ AGLV+ G +YF+ M+N+YGI     HY+CM+DL  R+G++ EA+  I  MPF+P  
Sbjct: 478 ACSRAGLVEKGQRYFELMINEYGIVPSNGHYSCMIDLFSRSGRIEEAMGFINGMPFRPDA 537

Query: 342 AIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLS 401
             + TLLSACR    L++ ++AA +L  L+P + AG Y  L++IYA+  KWD VA++R  
Sbjct: 538 IGWTTLLSACRNKGNLEIGKWAAESLIELDPHHPAG-YTLLSSIYASKGKWDCVAQLRRG 596

Query: 402 MKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFA 461
           MKE NV K PG SWI+    +H F + D   P    I+ KL+EL +++   GY PD  F 
Sbjct: 597 MKEKNVRKEPGQSWIKWKGKLHSFSADDESSPYSDQIYAKLEELYQKIIDNGYKPDTSFV 656

Query: 462 LHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKR 521
            H V E VK ++L  HSE+LAIAFGLI VP G PIRV KNLRVC DCH ATK+IS++  R
Sbjct: 657 HHDVEEAVKIKMLNCHSERLAIAFGLIFVPSGLPIRVGKNLRVCVDCHNATKHISSVTGR 716

Query: 522 EIIVRDTTRFHHFKDGTCSCGDYW 545
           EI+VRD  RFH FKDGTCSCGD+W
Sbjct: 717 EILVRDAVRFHRFKDGTCSCGDFW 740



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 109/470 (23%), Positives = 187/470 (39%), Gaps = 109/470 (23%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
           N+++  +A  R  +  A+ +FD IPQP++ S+N +L      S  +      F++LP +D
Sbjct: 42  NNIVHAYALIRSSIY-ARRVFDGIPQPNLFSWNNLL-LAYSKSGHLSEMERTFEKLPDRD 99

Query: 70  TASWNTMISGFVQKKNMAKARDLFLAM--------------------PEKNSVSWSAMIS 109
             +WN +I G+     +  A   +  M                         VS    I 
Sbjct: 100 GVTWNVLIEGYSLSGLVGAAVKAYNTMMKDFSSNLTRVTLMTMLKLSSSNGHVSLGKQIH 159

Query: 110 G--------------------YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVE 149
           G                    Y + G +  A ++F     ++ V +  ++ G +  G +E
Sbjct: 160 GQVIKLGFESYLLVGSPLLDMYSKVGCISDAKKVFYGLDDRNTVMYNTLMGGLLACGMIE 219

Query: 150 N-------------SWA------------EDGLKLLRMMIGLGIRPNASSLSSVLLGCSH 184
           +             SW+            ++ ++  R M   G++ +     SVL  C  
Sbjct: 220 DALQLFRGMEKDSVSWSAMIKGLAQNGMEKEAIECFREMKIEGLKMDQYPFGSVLPACGG 279

Query: 185 LSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAM 244
           L ++  G+Q+H  + ++ L       + LI MYCKC  L  A  +F  +++K+VV+W AM
Sbjct: 280 LGAINDGRQIHACIIRTNLQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAM 339

Query: 245 ISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYF-------- 296
           + GY Q G+  +A+++F  M+  G+ PD  T    + AC +   ++ G Q+         
Sbjct: 340 VVGYGQTGRAGEAVKIFLDMQRSGIDPDHYTLGQAISACANISSLEEGSQFHGKAITAGL 399

Query: 297 -------DSMVNDYGIAAKPD---------------HYTCMVDLLGRAGKLVEAVDLIKK 334
                  +S+V  YG     D                +T MV    + G+ VEA+ L  K
Sbjct: 400 IHYITVSNSLVTLYGKCGDIDDSTRLFNEMNVRDEVSWTAMVSAYAQFGRAVEAIQLFDK 459

Query: 335 M---PFKPQPAIFGTLLSACRVHKRLDLAE-----FAAM-NLFNLNPANA 375
           M     KP       ++SAC    R  L E     F  M N + + P+N 
Sbjct: 460 MVQLGLKPDGVTLTGVISAC---SRAGLVEKGQRYFELMINEYGIVPSNG 506



 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 96/361 (26%), Positives = 151/361 (41%), Gaps = 79/361 (21%)

Query: 60  DFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDK 119
           +  + LP  +T   N ++  +   ++   AR +F  +P+ N  SW+ ++  Y + G L +
Sbjct: 28  NIIRTLPHPETFLHNNIVHAYALIRSSIYARRVFDGIPQPNLFSWNNLLLAYSKSGHLSE 87

Query: 120 AVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSV- 178
               F+  P +  V W  +I GY   G V  +     +K    M    ++  +S+L+ V 
Sbjct: 88  MERTFEKLPDRDGVTWNVLIEGYSLSGLVGAA-----VKAYNTM----MKDFSSNLTRVT 138

Query: 179 LLGCSHLSS----LQLGKQVHQLVFKSPLCKDTTALTPLISMYCK--------------- 219
           L+    LSS    + LGKQ+H  V K          +PL+ MY K               
Sbjct: 139 LMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLDMYSKVGCISDAKKVFYGLD 198

Query: 220 ----------------CGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDK 263
                           CG +EDA +LF  ++ KD V+W+AMI G AQ+G  ++A+  F +
Sbjct: 199 DRNTVMYNTLMGGLLACGMIEDALQLFRGME-KDSVSWSAMIKGLAQNGMEKEAIECFRE 257

Query: 264 MKDEGMKPDSITFVALLLACNHAGLVDLGIQ--------------YFDSMVNDYGIAAKP 309
           MK EG+K D   F ++L AC   G ++ G Q              Y  S + D     K 
Sbjct: 258 MKIEGLKMDQYPFGSVLPACGGLGAINDGRQIHACIIRTNLQDHIYVGSALIDMYCKCKC 317

Query: 310 DHY----------------TCMVDLLGRAGKLVEAVDL---IKKMPFKPQPAIFGTLLSA 350
            HY                T MV   G+ G+  EAV +   +++    P     G  +SA
Sbjct: 318 LHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAGEAVKIFLDMQRSGIDPDHYTLGQAISA 377

Query: 351 C 351
           C
Sbjct: 378 C 378



 Score = 39.3 bits (90), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 25/122 (20%), Positives = 59/122 (48%), Gaps = 4/122 (3%)

Query: 182 CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTW 241
           C  L + +  K +H  + ++    +T     ++  Y        A ++F  I + ++ +W
Sbjct: 13  CIGLGASRHVKMIHGNIIRTLPHPETFLHNNIVHAYALIRSSIYARRVFDGIPQPNLFSW 72

Query: 242 NAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN 301
           N ++  Y++ G   +  R F+K+ D     D +T+  L+   + +GLV   ++ +++M+ 
Sbjct: 73  NNLLLAYSKSGHLSEMERTFEKLPDR----DGVTWNVLIEGYSLSGLVGAAVKAYNTMMK 128

Query: 302 DY 303
           D+
Sbjct: 129 DF 130


>gi|413946157|gb|AFW78806.1| hypothetical protein ZEAMMB73_634908 [Zea mays]
          Length = 1145

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 213/574 (37%), Positives = 336/574 (58%), Gaps = 48/574 (8%)

Query: 7   VNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLN--SDDVVAAFDFFQR 64
           V+WN+++ G+  Q   + +A++LF+++P  + +S+  M++    N  S+  + +     R
Sbjct: 353 VSWNAMITGYM-QNEMVDEAEDLFNRMPFRNTISWAGMIAGYARNGRSEQALVSLQALHR 411

Query: 65  -------------------------------LPIKDTASWNT-----MISGFVQKKNMAK 88
                                          L +K    +N+     +I+ + + +++  
Sbjct: 412 KGMLPSLSSLTSSFFACSNIEALETGKQVHSLAVKAGCQFNSYVCNALITLYGKYRSIGS 471

Query: 89  ARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYV 148
            R +F  M  K++VS+++ +S  ++    D+A ++F   P   VV+WT +IS        
Sbjct: 472 VRQIFDRMTVKDTVSYNSFMSALVQNNLFDEARDVFNNMPSPDVVSWTTIISAC-----A 526

Query: 149 ENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCS-HLSSLQLGKQVHQLVFKSPLCKDT 207
           +     + +++ R M+     PN   L+ +LLG S +L + QLG+Q+H +  K  +    
Sbjct: 527 QADQGNEAVEIFRSMLHERELPNPPILT-ILLGLSGNLGAPQLGQQIHTIAIKLGMDSGL 585

Query: 208 TALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE 267
                L+SMY KC    D+ K+F  ++ +D+ TWN +I+GYAQHG G +A+R++  M   
Sbjct: 586 VVANALVSMYFKCSS-ADSLKVFDSMEERDIFTWNTIITGYAQHGLGREAIRMYQLMVSA 644

Query: 268 GMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVE 327
           G+ P+ +TFV LL AC+H+GLVD G Q+F SM +DYG+    +HY CMVDLLGRAG +  
Sbjct: 645 GVLPNEVTFVGLLHACSHSGLVDEGHQFFKSMSSDYGLTPLLEHYACMVDLLGRAGDVQG 704

Query: 328 AVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYA 387
           A   I  MP +P   I+  LL AC++HK +++   AA  LF++ P+NA G YV L+NIY+
Sbjct: 705 AEHFIYDMPIEPDSVIWSALLGACKIHKNVEIGRRAAEKLFSIEPSNA-GNYVMLSNIYS 763

Query: 388 AMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEK 447
           +   WD+VA++R  MKE  V K PG SW+++   +H F +GD  H ++ +I+  L EL  
Sbjct: 764 SQGMWDEVAKVRKLMKERGVNKDPGCSWMQIKNKMHSFVTGDEEHEQIQNIYATLWELYT 823

Query: 448 RMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGD 507
            +K  GYVPD +F LH + EE KE  LL+HSEKLA+A+GL+  P G PI++ KNLR+CGD
Sbjct: 824 LLKATGYVPDTDFVLHDIDEEQKESSLLYHSEKLAVAYGLLVTPKGMPIQIMKNLRICGD 883

Query: 508 CHRATKYISAIEKREIIVRDTTRFHHFKDGTCSC 541
           CH   K++S++ KREI VRD  RFHHF++G+CSC
Sbjct: 884 CHTFIKFVSSVTKREIDVRDGNRFHHFRNGSCSC 917



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 87/316 (27%), Positives = 166/316 (52%), Gaps = 14/316 (4%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
            ++L G+ K    L  A + F+ +   +  +++ +++  L  +  +  AF  +QR P+K 
Sbjct: 262 TAILNGYTKDVNMLDSAVKFFEGMAARNEYTWSTIIAA-LSQAGRIDDAFAVYQRDPLKS 320

Query: 70  TASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPV 129
             S  +M++G  +   +  A+ LF  + E N VSW+AMI+GY++   +D+A +LF   P 
Sbjct: 321 VPSRTSMLTGLARYGRIDDAKILFDQIHEPNVVSWNAMITGYMQNEMVDEAEDLFNRMPF 380

Query: 130 KSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQ 189
           ++ ++W  MI+GY +     N  +E  L  L+ +   G+ P+ SSL+S    CS++ +L+
Sbjct: 381 RNTISWAGMIAGYAR-----NGRSEQALVSLQALHRKGMLPSLSSLTSSFFACSNIEALE 435

Query: 190 LGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYA 249
            GKQVH L  K+    ++     LI++Y K   +    ++F  +  KD V++N+ +S   
Sbjct: 436 TGKQVHSLAVKAGCQFNSYVCNALITLYGKYRSIGSVRQIFDRMTVKDTVSYNSFMSALV 495

Query: 250 QHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKP 309
           Q+   ++A  +F+ M      PD +++  ++ AC  A   +  ++ F SM+++  +   P
Sbjct: 496 QNNLFDEARDVFNNMP----SPDVVSWTTIISACAQADQGNEAVEIFRSMLHERELPNPP 551

Query: 310 DHYTCMVDLLGRAGKL 325
                +  LLG +G L
Sbjct: 552 ----ILTILLGLSGNL 563



 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 93/365 (25%), Positives = 169/365 (46%), Gaps = 49/365 (13%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIML--------------------------SCILLN--- 51
           G+L +A+E+FD +P  D++++N M+                            ILL+   
Sbjct: 47  GRLHEAREVFDSMPFRDIIAWNSMIFAYCNNGMPDAGRSLADAISGGNLRTGTILLSGYA 106

Query: 52  -SDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISG 110
            +  V  A   F  + +++T +WN M++ +VQ  ++  AR LF AMP ++  SW+ M++G
Sbjct: 107 RAGRVRDARRVFDGMGVRNTVAWNAMVTCYVQNGDITLARKLFDAMPSRDVSSWNTMLTG 166

Query: 111 YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRP 170
           Y     +++A  LF+  P ++ V+WT MISGY+       +W      + R M+  G+ P
Sbjct: 167 YCHSQLMEEARNLFERMPERNGVSWTVMISGYVLIEQHGRAW-----DMFRTMLCEGMTP 221

Query: 171 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCK-CGDLEDACKL 229
              +L SVL    HL    + + +H LV K+   +D    T +++ Y K    L+ A K 
Sbjct: 222 EQPNLVSVLSAVRHLGKPGILESIHVLVHKTGFERDVVVGTAILNGYTKDVNMLDSAVKF 281

Query: 230 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLF--DKMKDEGMKPDSITFVALLLACNHAG 287
           F  +  ++  TW+ +I+  +Q G+ + A  ++  D +K    +   +T +A        G
Sbjct: 282 FEGMAARNEYTWSTIIAALSQAGRIDDAFAVYQRDPLKSVPSRTSMLTGLA------RYG 335

Query: 288 LVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTL 347
            +D     FD +     ++     +  M+    +   + EA DL  +MPF+   +  G +
Sbjct: 336 RIDDAKILFDQIHEPNVVS-----WNAMITGYMQNEMVDEAEDLFNRMPFRNTISWAGMI 390

Query: 348 LSACR 352
               R
Sbjct: 391 AGYAR 395



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 74/345 (21%), Positives = 141/345 (40%), Gaps = 94/345 (27%)

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQL 117
           A + F  +P +D  +WN+MI  +         R L  A+   N  + + ++SGY   G++
Sbjct: 52  AREVFDSMPFRDIIAWNSMIFAYCNNGMPDAGRSLADAISGGNLRTGTILLSGYARAGRV 111

Query: 118 DKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSS 177
             A  +F    V++ VAW AM++ Y++ G                               
Sbjct: 112 RDARRVFDGMGVRNTVAWNAMVTCYVQNG------------------------------- 140

Query: 178 VLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKD 237
                     + L ++    +F +   +D ++   +++ YC    +E+A  LF  +  ++
Sbjct: 141 ---------DITLARK----LFDAMPSRDVSSWNTMLTGYCHSQLMEEARNLFERMPERN 187

Query: 238 VVTWNAMISGYA---QHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG------- 287
            V+W  MISGY    QHG   +A  +F  M  EGM P+    V++L A  H G       
Sbjct: 188 GVSWTVMISGYVLIEQHG---RAWDMFRTMLCEGMTPEQPNLVSVLSAVRHLGKPGILES 244

Query: 288 -----------------------------LVDLGIQYFDSMVNDYGIAAKPDH-YTCMVD 317
                                        ++D  +++F+      G+AA+ ++ ++ ++ 
Sbjct: 245 IHVLVHKTGFERDVVVGTAILNGYTKDVNMLDSAVKFFE------GMAARNEYTWSTIIA 298

Query: 318 LLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEF 362
            L +AG++ +A  + ++ P K  P+    L    R + R+D A+ 
Sbjct: 299 ALSQAGRIDDAFAVYQRDPLKSVPSRTSMLTGLAR-YGRIDDAKI 342



 Score = 44.7 bits (104), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 47/196 (23%), Positives = 79/196 (40%), Gaps = 18/196 (9%)

Query: 202 PLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLF 261
           P    T+A +  I    + G L +A ++F  +  +D++ WN+MI  Y  +G  +    L 
Sbjct: 28  PRSPGTSAQSARIRELGRLGRLHEAREVFDSMPFRDIIAWNSMIFAYCNNGMPDAGRSLA 87

Query: 262 DKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGR 321
           D +    ++  +I    LL     AG V    + FD M     +A     +  MV    +
Sbjct: 88  DAISGGNLRTGTI----LLSGYARAGRVRDARRVFDGMGVRNTVA-----WNAMVTCYVQ 138

Query: 322 AGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQ 381
            G +  A  L   MP +   +    L   C  H +L + E  A NLF   P      +  
Sbjct: 139 NGDITLARKLFDAMPSRDVSSWNTMLTGYC--HSQL-MEE--ARNLFERMPERNGVSWTV 193

Query: 382 LANIYAAMKK----WD 393
           + + Y  +++    WD
Sbjct: 194 MISGYVLIEQHGRAWD 209


>gi|113205417|gb|AAU90328.2| Pentatricopeptide repeat domain containing protein, putative
           [Solanum demissum]
          Length = 819

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 208/555 (37%), Positives = 327/555 (58%), Gaps = 18/555 (3%)

Query: 3   VKTTVNWNSVLAG----FAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAA 58
           +KT+  W+  +A     F  +   +  A+ LFD++P+ D VSYNI+++    N      +
Sbjct: 271 IKTSYVWDIFVANALLDFYSKHDYIDLAKNLFDEMPELDGVSYNIIITGYAWNGQ-YEKS 329

Query: 59  FDFFQRLP----IKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVS----WSAMISG 110
           FD F+RL      +    + TM+S    + N++  R          +VS     +A++  
Sbjct: 330 FDLFKRLQGTSFDRKNFPFATMLSVAAIELNLSMGRQTHAQAVVTTAVSEVQVGNALVDM 389

Query: 111 YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRP 170
           Y +C + + A  +F     ++ V WTA+IS Y++ G+      E+ LK+ + M    +  
Sbjct: 390 YAKCEKFEDANRIFANLAYRNSVPWTAIISIYVQKGF-----HEEALKMFKEMNRENVHG 444

Query: 171 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 230
           + ++ +S L   ++L+S+ LGKQ+H  V +  L     + + L+ MY  CG ++DA ++F
Sbjct: 445 DQATFASTLKASANLASVSLGKQLHSSVIRLGLLSSVFSGSVLVDMYANCGSMKDAIEVF 504

Query: 231 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVD 290
            E+  +++V WNA+IS Y+Q+G  E     F  M + G+ PDS++F+++L AC+H GLV+
Sbjct: 505 KEMPDRNIVCWNALISAYSQNGDAEATFSSFADMIESGLYPDSVSFLSVLTACSHRGLVE 564

Query: 291 LGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSA 350
             + YF+SM   Y +  +  HY  M+D+L R+G+  EA +LI +MPF+P   ++ ++L++
Sbjct: 565 KALWYFNSMTQVYKLDPRRKHYATMIDVLCRSGRFNEAENLISEMPFEPDEVMWSSVLNS 624

Query: 351 CRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKM 410
           CR+HK  DLA+ AA  LF ++    A  YV ++NIYA   KW++ A+++ +M+E  V K+
Sbjct: 625 CRIHKNQDLAKKAADQLFKMDALRDAAAYVNMSNIYAEAGKWENAAKVKKAMRERGVKKV 684

Query: 411 PGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVK 470
             YSW+E+   VH F + DR HP+   I  K+  L + M   GY PD    L  V EE+K
Sbjct: 685 TAYSWVEIDHRVHVFTANDRTHPQTEQIRRKINSLVELMDKEGYKPDTSCTLQNVDEEMK 744

Query: 471 EQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTR 530
            + L +HSE+LAIAF LI  P G+PI + KNLR C DCH A K IS I  REI VRD++R
Sbjct: 745 IESLKYHSERLAIAFALINTPEGSPIIIMKNLRACVDCHAAIKVISKIVGREITVRDSSR 804

Query: 531 FHHFKDGTCSCGDYW 545
           FHHF+DG+CSCGDYW
Sbjct: 805 FHHFRDGSCSCGDYW 819



 Score =  131 bits (330), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 105/420 (25%), Positives = 182/420 (43%), Gaps = 55/420 (13%)

Query: 69  DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAP 128
           + + +N  +   V+   +AKAR LF  MP +N+ S + M+SGY++   L +A ELF+   
Sbjct: 45  EISRFNFKLKDLVRANQIAKARQLFDEMPYRNTSSVNMMVSGYVKSRNLFRARELFESMF 104

Query: 129 VKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSL 188
            ++ V+WT MI GY      +N+  ++   L   M   G++P+  + +++L G    ++L
Sbjct: 105 SRNEVSWTIMIGGY-----SQNNQPKEAFNLYTEMCRSGVKPDHITFATLLSGFDDTTTL 159

Query: 189 QLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGY 248
           +   Q+H  + +            L+  YCK   L+ A +LF E+  KD V++N MI+GY
Sbjct: 160 KEVLQIHSHIIRFGFSASLIVFNSLVDSYCKTCCLDIASQLFSEMPTKDSVSFNVMITGY 219

Query: 249 AQHGKGEKALRLFDKMKDEGMKPDSITFVALL-----------------LACNHA----- 286
            ++G  E+AL+LF +M++   +P   TF A+L                 LA   +     
Sbjct: 220 TKYGFREEALKLFMQMRNMDFQPSGFTFAAMLGMSVGSEDVIFGQQIHGLAIKTSYVWDI 279

Query: 287 -------------GLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIK 333
                          +DL    FD M    G++     Y  ++      G+  ++ DL K
Sbjct: 280 FVANALLDFYSKHDYIDLAKNLFDEMPELDGVS-----YNIIITGYAWNGQYEKSFDLFK 334

Query: 334 KM---PFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMK 390
           ++    F  +   F T+LS   +   L +              +       L ++YA  +
Sbjct: 335 RLQGTSFDRKNFPFATMLSVAAIELNLSMGRQTHAQAVVTTAVSEVQVGNALVDMYAKCE 394

Query: 391 KWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHE-----FRSGDR--VHPELVSIHEKLK 443
           K++D  RI  ++   N V       I V    HE     F+  +R  VH +  +    LK
Sbjct: 395 KFEDANRIFANLAYRNSVPWTAIISIYVQKGFHEEALKMFKEMNRENVHGDQATFASTLK 454



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 71/299 (23%), Positives = 136/299 (45%), Gaps = 45/299 (15%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
            ++  A++LFD++P  +  S N+M+S   + S ++  A + F+ +  ++  SW  MI G+
Sbjct: 60  NQIAKARQLFDEMPYRNTSSVNMMVSG-YVKSRNLFRARELFESMFSRNEVSWTIMIGGY 118

Query: 81  VQKKNMAKARDLFLAM----PEKNSVSWSAMISGYIECGQL------------------- 117
            Q     +A +L+  M     + + ++++ ++SG+ +   L                   
Sbjct: 119 SQNNQPKEAFNLYTEMCRSGVKPDHITFATLLSGFDDTTTLKEVLQIHSHIIRFGFSASL 178

Query: 118 ----------------DKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLR 161
                           D A +LF   P K  V++  MI+GY K+G+      E+ LKL  
Sbjct: 179 IVFNSLVDSYCKTCCLDIASQLFSEMPTKDSVSFNVMITGYTKYGF-----REEALKLFM 233

Query: 162 MMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCG 221
            M  +  +P+  + +++L        +  G+Q+H L  K+    D      L+  Y K  
Sbjct: 234 QMRNMDFQPSGFTFAAMLGMSVGSEDVIFGQQIHGLAIKTSYVWDIFVANALLDFYSKHD 293

Query: 222 DLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 280
            ++ A  LF E+   D V++N +I+GYA +G+ EK+  LF +++       +  F  +L
Sbjct: 294 YIDLAKNLFDEMPELDGVSYNIIITGYAWNGQYEKSFDLFKRLQGTSFDRKNFPFATML 352


>gi|224124638|ref|XP_002330073.1| predicted protein [Populus trichocarpa]
 gi|222871498|gb|EEF08629.1| predicted protein [Populus trichocarpa]
          Length = 793

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 231/583 (39%), Positives = 335/583 (57%), Gaps = 45/583 (7%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSC------------- 47
           M  +  +  NS++  F K +G +++A +LF+++ Q D+VS++ ++SC             
Sbjct: 218 MPERNVIASNSMIVLFGK-KGNVEEACKLFNEMKQKDLVSWSALISCYEQNEMYEEALIL 276

Query: 48  --------ILLNSDDVVAAFDFFQRLPIKDTASW-----------------NTMISGFVQ 82
                   I+++   V++      RL +  T                    N +I  +  
Sbjct: 277 FKEMNANGIMVDEVVVLSVLSACSRLLVVITGKLVHGLVVKVGIETYVNLQNALIHMYSS 336

Query: 83  KKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGY 142
            + +  A+ LF      + +SW++MISGY++CG+++KA  LF   P K  V+W+AMISGY
Sbjct: 337 CEEVVTAQKLFSESCCLDQISWNSMISGYVKCGEIEKARALFDSMPDKDNVSWSAMISGY 396

Query: 143 MKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSP 202
            +    ++ + E  L L + M   G +P+ + L SV+  C+HL++L  GK +H  + K+ 
Sbjct: 397 AQ----QDRFTET-LVLFQEMQIEGTKPDETILVSVISACTHLAALDQGKWIHAYIRKNG 451

Query: 203 LCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFD 262
           L  +    T LI+MY K G +EDA ++F  ++ K V TWNA+I G A +G  +K+L+ F 
Sbjct: 452 LKINIILGTTLINMYMKLGCVEDALEVFKGLEEKGVSTWNALILGLAMNGLVDKSLKTFS 511

Query: 263 KMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRA 322
           +MK+ G+ P+ ITFVA+L AC H GLVD G ++F+SM+ ++ I     HY CMVDLLGRA
Sbjct: 512 EMKEHGVTPNEITFVAVLGACRHMGLVDEGHRHFNSMIQEHKIGPNIKHYGCMVDLLGRA 571

Query: 323 GKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQL 382
           G L EA +LI+ MP  P  + +G LL AC+ +   +  E     L  L+P +  G  V L
Sbjct: 572 GMLKEAEELIESMPMAPDVSTWGALLGACKKYGDNETGERIGRKLVELHP-DHDGFNVLL 630

Query: 383 ANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKL 442
           +NIYA+   W DV  +R  M+++ VVK PG S IE    VHEF +GD+ HP+   I   L
Sbjct: 631 SNIYASKGNWVDVLEVRGMMRQHGVVKTPGCSMIEAHGRVHEFLAGDKTHPQNEHIEHML 690

Query: 443 KELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNL 502
            E+ K++KL GY PD       + EE KE  L  HSEKLAIAFGLI +   TPIR+ KNL
Sbjct: 691 DEMAKKLKLEGYAPDTREVSLDIDEEEKETTLFRHSEKLAIAFGLIAIDPPTPIRIVKNL 750

Query: 503 RVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           R+C DCH A K IS    REI+VRD  RFHHFK G+CSC DYW
Sbjct: 751 RICNDCHTAAKLISKAFNREIVVRDRHRFHHFKQGSCSCMDYW 793



 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 93/308 (30%), Positives = 155/308 (50%), Gaps = 37/308 (12%)

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAV 121
           F    + D  SWN+M++G+V   N+ +A+D++  MPE+N ++ ++MI  + + G +++A 
Sbjct: 184 FDGSSVLDMVSWNSMLAGYVLVGNVEEAKDVYDRMPERNVIASNSMIVLFGKKGNVEEAC 243

Query: 122 ELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLG 181
           +LF     K +V+W+A+IS Y      +N   E+ L L + M   GI  +   + SVL  
Sbjct: 244 KLFNEMKQKDLVSWSALISCYE-----QNEMYEEALILFKEMNANGIMVDEVVVLSVLSA 298

Query: 182 CSHLSSLQLGKQVHQLV-------------------------------FKSPLCKDTTAL 210
           CS L  +  GK VH LV                               F    C D  + 
Sbjct: 299 CSRLLVVITGKLVHGLVVKVGIETYVNLQNALIHMYSSCEEVVTAQKLFSESCCLDQISW 358

Query: 211 TPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMK 270
             +IS Y KCG++E A  LF  +  KD V+W+AMISGYAQ  +  + L LF +M+ EG K
Sbjct: 359 NSMISGYVKCGEIEKARALFDSMPDKDNVSWSAMISGYAQQDRFTETLVLFQEMQIEGTK 418

Query: 271 PDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVD 330
           PD    V+++ AC H   +D G ++  + +   G+       T ++++  + G + +A++
Sbjct: 419 PDETILVSVISACTHLAALDQG-KWIHAYIRKNGLKINIILGTTLINMYMKLGCVEDALE 477

Query: 331 LIKKMPFK 338
           + K +  K
Sbjct: 478 VFKGLEEK 485



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 55/208 (26%), Positives = 99/208 (47%), Gaps = 55/208 (26%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI 164
           + +I+ Y  CG L  A ++F  + V  +V+W +M++GY+  G VE   A+D         
Sbjct: 165 NTLINMYAVCGNLSDARKVFDGSSVLDMVSWNSMLAGYVLVGNVEE--AKD--------- 213

Query: 165 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 224
                                            V+     ++  A   +I ++ K G++E
Sbjct: 214 ---------------------------------VYDRMPERNVIASNSMIVLFGKKGNVE 240

Query: 225 DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 284
           +ACKLF E+++KD+V+W+A+IS Y Q+   E+AL LF +M   G+  D +  +++L AC+
Sbjct: 241 EACKLFNEMKQKDLVSWSALISCYEQNEMYEEALILFKEMNANGIMVDEVVVLSVLSACS 300

Query: 285 -----------HAGLVDLGIQYFDSMVN 301
                      H  +V +GI+ + ++ N
Sbjct: 301 RLLVVITGKLVHGLVVKVGIETYVNLQN 328


>gi|359482718|ref|XP_002263673.2| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Vitis vinifera]
          Length = 1088

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 218/556 (39%), Positives = 335/556 (60%), Gaps = 18/556 (3%)

Query: 1    MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIP----QPDVVSYNIMLS-CILL-NSDD 54
            M  +   +WNS++ G+ +Q G+ ++A  LF ++     +PD  S + MLS C+ L +S  
Sbjct: 540  MAERNAYSWNSMIEGY-QQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQK 598

Query: 55   VVAAFDFFQRLPIKDTASWNT-MISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE 113
                 +F  R  +++       ++  + +  +M  A  ++    +K+ +  + M+S ++ 
Sbjct: 599  GRELHNFIVRNTMEEEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKDVILNNVMVSAFVN 658

Query: 114  CGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNAS 173
             G+ + A  LF     ++   W ++++GY   G  + S+          M+   I  +  
Sbjct: 659  SGRANDAKNLFDQMEQRNTALWNSILAGYANKGLKKESFNH-----FLEMLESDIEYDVL 713

Query: 174  SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTAL-TPLISMYCKCGDLEDACKLFLE 232
            ++ +++  CS L +L+ G Q+H L+ K      +  L T L+ MY KCG +  A  +F  
Sbjct: 714  TMVTIVNLCSSLPALEHGDQLHSLIIKKGFVNCSVVLETALVDMYSKCGAITKARTVFDN 773

Query: 233  IQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 292
            +  K++V+WNAMISGY++HG  ++AL L+++M  +GM P+ +TF+A+L AC+H GLV+ G
Sbjct: 774  MNGKNIVSWNAMISGYSKHGCSKEALILYEEMPKKGMYPNEVTFLAILSACSHTGLVEEG 833

Query: 293  IQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACR 352
            ++ F SM  DY I AK +HYTCMVDLLGRAG+L +A + ++KMP +P+ + +G LL ACR
Sbjct: 834  LRIFTSMQEDYNIEAKAEHYTCMVDLLGRAGRLEDAKEFVEKMPIEPEVSTWGALLGACR 893

Query: 353  VHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPG 412
            VHK +D+   AA  LF L+P N  G YV ++NIYAA  +W +V  IR  MK   V K PG
Sbjct: 894  VHKDMDMGRLAAQRLFELDPQN-PGPYVIMSNIYAAAGRWKEVEDIRQMMKMKGVKKDPG 952

Query: 413  YSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGE---EV 469
             SWIE+ + +  F +G + HP+   I+  L+ L  + K  GY+PD  F L  V +   E 
Sbjct: 953  VSWIEINSEIQIFHAGSKTHPKTEEIYNNLRHLTLQSKGLGYIPDTSFILQNVKDIKEEE 1012

Query: 470  KEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTT 529
            +E+ LL HSE+LA++ GLI +P  + IRVFKNLR+CGDCH ATK+IS I  R II RDT 
Sbjct: 1013 EEEYLLQHSERLALSLGLISLPKKSTIRVFKNLRICGDCHTATKFISKITGRRIIARDTN 1072

Query: 530  RFHHFKDGTCSCGDYW 545
            RFHHF++G CSCGDYW
Sbjct: 1073 RFHHFENGKCSCGDYW 1088



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 118/476 (24%), Positives = 199/476 (41%), Gaps = 68/476 (14%)

Query: 26  AQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRL----PIKDTASWNTMISGFV 81
           A++LF+++P+ ++ ++N M+       DD +     + R+       D  ++ ++I   +
Sbjct: 128 ARKLFEEMPERNLTAWNTMI-LAYARVDDYMEVLRLYGRMRGSGNFSDKFTFPSVIKACI 186

Query: 82  QKKNMAKARDLFLAMPEK----NSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTA 137
             ++M   R L  ++ +     N     A++ GY   G +D AV         SVV W A
Sbjct: 187 AMEDMGGVRQLQSSVVKAGLNCNLFVGGALVDGYARFGWMDDAVTSLDEIEGTSVVTWNA 246

Query: 138 MISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQL 197
           +I+GY+K    E +W      +   M+ +G+ P+  + +S L  C  L S   GKQVH  
Sbjct: 247 VIAGYVKILSWEEAWG-----IFDRMLKIGVCPDNFTFASALRVCGALRSRDGGKQVHSK 301

Query: 198 VFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKA 257
           +       DT     LI MY KC D E   K+F E+  ++ VTWN++IS  AQ G    A
Sbjct: 302 LIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQFGHFNDA 361

Query: 258 LRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG-----------------IQYFDSMV 300
           L LF +M++ G K +     ++L+A   AGL D+G                 I    ++V
Sbjct: 362 LVLFLRMQESGYKSNRFNLGSILMAS--AGLADIGKGRELHGHLVRNLLNSDIILGSALV 419

Query: 301 NDY---GIAAKPDH------------YTCMVDLLGRAGKLVEAVDLIKKMP----FKPQP 341
           + Y   G+  +               Y  ++    + GK  EA++L   M      +P  
Sbjct: 420 DMYSKCGMVEEAHQVFRSLLERNEVSYNALLAGYVQEGKAEEALELYHDMQSEDGIQPDQ 479

Query: 342 AIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLS 401
             F TLL+ C   +  +       +L   N         +L ++Y+   + +    I   
Sbjct: 480 FTFTTLLTLCANQRNDNQGRQIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNR 539

Query: 402 MKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPD 457
           M E N      YSW    +++  ++        L         L K+M+L G  PD
Sbjct: 540 MAERN-----AYSW---NSMIEGYQQNGETQEAL--------RLFKQMQLNGIKPD 579



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 96/395 (24%), Positives = 185/395 (46%), Gaps = 52/395 (13%)

Query: 3   VKTTVNWN-----SVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCI--LLNSDDV 55
           VK  +N N     +++ G+A+  G + DA    D+I    VV++N +++    +L+ ++ 
Sbjct: 202 VKAGLNCNLFVGGALVDGYAR-FGWMDDAVTSLDEIEGTSVVTWNAVIAGYVKILSWEEA 260

Query: 56  VAAFDFFQRL---PIKDTASWNTMISGFVQKKNMAKA--RDLFLAMPEKNSVSWSAMISG 110
              FD   ++   P   T +    + G ++ ++  K     L     + ++   +A+I  
Sbjct: 261 WGIFDRMLKIGVCPDNFTFASALRVCGALRSRDGGKQVHSKLIACGFKGDTFVGNALIDM 320

Query: 111 YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRP 170
           Y +C   +  +++F     ++ V W ++IS   +FG+       D L L   M   G + 
Sbjct: 321 YAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQFGHFN-----DALVLFLRMQESGYKS 375

Query: 171 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 230
           N  +L S+L+  + L+ +  G+++H  + ++ L  D    + L+ MY KCG +E+A ++F
Sbjct: 376 NRFNLGSILMASAGLADIGKGRELHGHLVRNLLNSDIILGSALVDMYSKCGMVEEAHQVF 435

Query: 231 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE-GMKPDSITFVALLLACN----- 284
             +  ++ V++NA+++GY Q GK E+AL L+  M+ E G++PD  TF  LL  C      
Sbjct: 436 RSLLERNEVSYNALLAGYVQEGKAEEALELYHDMQSEDGIQPDQFTFTTLLTLCANQRND 495

Query: 285 ------HAGLVDLGIQ----YFDSMVNDYGIAAKPDH---------------YTCMVDLL 319
                 HA L+   I         +V+ Y    + ++               +  M++  
Sbjct: 496 NQGRQIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGY 555

Query: 320 GRAGKLVEAVDLIKKMPF---KPQPAIFGTLLSAC 351
            + G+  EA+ L K+M     KP      ++LS+C
Sbjct: 556 QQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSC 590



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 68/270 (25%), Positives = 128/270 (47%), Gaps = 45/270 (16%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIP-----QPDVVSYNIMLS-CILLNSDDVVA 57
           +  V++N++LAG+  Q GK ++A EL+  +      QPD  ++  +L+ C    +D+   
Sbjct: 441 RNEVSYNALLAGYV-QEGKAEEALELYHDMQSEDGIQPDQFTFTTLLTLCANQRNDNQGR 499

Query: 58  AFD--FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECG 115
                  +    K+      ++  + +   +  A+++F  M E+N+ SW++MI GY + G
Sbjct: 500 QIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNG 559

Query: 116 QLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSL 175
           +  +A+ LFK   +                                     GI+P+  SL
Sbjct: 560 ETQEALRLFKQMQLN------------------------------------GIKPDCFSL 583

Query: 176 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR 235
           SS+L  C  LS  Q G+++H  + ++ + ++      L+ MY KCG ++ A K++ +  +
Sbjct: 584 SSMLSSCVSLSDSQKGRELHNFIVRNTMEEEGILQVVLVDMYAKCGSMDYAWKVYDQTIK 643

Query: 236 KDVVTWNAMISGYAQHGKGEKALRLFDKMK 265
           KDV+  N M+S +   G+   A  LFD+M+
Sbjct: 644 KDVILNNVMVSAFVNSGRANDAKNLFDQME 673



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 57/196 (29%), Positives = 93/196 (47%), Gaps = 14/196 (7%)

Query: 111 YIECGQLDK---AVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRM---MI 164
           Y   G LD    A +LF+  P +++ AW  MI  Y +         +D +++LR+   M 
Sbjct: 116 YARSGCLDDLCYARKLFEEMPERNLTAWNTMILAYAR--------VDDYMEVLRLYGRMR 167

Query: 165 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 224
           G G   +  +  SV+  C  +  +   +Q+   V K+ L  +      L+  Y + G ++
Sbjct: 168 GSGNFSDKFTFPSVIKACIAMEDMGGVRQLQSSVVKAGLNCNLFVGGALVDGYARFGWMD 227

Query: 225 DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 284
           DA     EI+   VVTWNA+I+GY +    E+A  +FD+M   G+ PD+ TF + L  C 
Sbjct: 228 DAVTSLDEIEGTSVVTWNAVIAGYVKILSWEEAWGIFDRMLKIGVCPDNFTFASALRVCG 287

Query: 285 HAGLVDLGIQYFDSMV 300
                D G Q    ++
Sbjct: 288 ALRSRDGGKQVHSKLI 303



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 78/158 (49%), Gaps = 6/158 (3%)

Query: 176 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC---KLFLE 232
           SS++  C   +S Q GK +H  +  +    D   +T ++ +Y + G L+D C   KLF E
Sbjct: 75  SSLIQDCIDSNSFQRGKSIHTQMISNGYNPDAYLMTKILMLYARSGCLDDLCYARKLFEE 134

Query: 233 IQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDL- 291
           +  +++  WN MI  YA+     + LRL+ +M+  G   D  TF +++ AC    + D+ 
Sbjct: 135 MPERNLTAWNTMILAYARVDDYMEVLRLYGRMRGSGNFSDKFTFPSVIKAC--IAMEDMG 192

Query: 292 GIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAV 329
           G++   S V   G+         +VD   R G + +AV
Sbjct: 193 GVRQLQSSVVKAGLNCNLFVGGALVDGYARFGWMDDAV 230


>gi|347954530|gb|AEP33765.1| organelle transcript processing 82, partial [Lepidium sativum]
          Length = 672

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 228/577 (39%), Positives = 323/577 (55%), Gaps = 48/577 (8%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
           N+ L     Q G+L+DA ++FD+     VVSY  +++    +   +  A   F  + +KD
Sbjct: 103 NTSLISMYAQNGRLEDAHKVFDRSSHRHVVSYTALITG-YASRGYINNARKLFDEISVKD 161

Query: 70  TASWNTMISGFVQKKNMAKARDLFLAM------PEKNSV--------------------S 103
             SWN MISG+V+  N  +A +L+  M      P+++++                    S
Sbjct: 162 VVSWNAMISGYVETCNFKEALELYKDMMKTNVKPDESTMVTVVSACAQSGSIELGRQLHS 221

Query: 104 W-------------SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVEN 150
           W             + +I  Y +CG+++ A  LF+    K V++W  +I G+      + 
Sbjct: 222 WIEDHGFGSNIKIVNVLIDLYSKCGEVETACGLFQGLAKKDVISWNTLIGGHTHMNLYK- 280

Query: 151 SWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK--SPLCKDTT 208
               + L L + M+  G  PN  ++ SVL  C+HL ++ +G+ +H  + K    +   ++
Sbjct: 281 ----EALLLFQEMLRSGESPNDVTMLSVLPACAHLGAIDIGRWIHVYINKRLKGVTNASS 336

Query: 209 ALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEG 268
            LT LI MY KCGD+E A ++F  +  + + +WNAMI G+A HGK   A  LF KM+  G
Sbjct: 337 LLTSLIDMYAKCGDIEAAKQVFDSMLTRSLSSWNAMIFGFAMHGKANAAFDLFSKMRKNG 396

Query: 269 MKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEA 328
           + PD ITFV LL AC+H+G++DLG   F SM  DY I  K +HY CM+DLLG  G   EA
Sbjct: 397 IDPDDITFVGLLSACSHSGMLDLGRHIFRSMSQDYKITPKLEHYGCMIDLLGHCGLFKEA 456

Query: 329 VDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAA 388
            ++I+ MP +P   I+ +LL AC++H  ++L E  A NL  + P N  G YV L+NIYA 
Sbjct: 457 KEMIRTMPMEPDGVIWCSLLKACKMHNNVELGESYAQNLIKIEPENP-GSYVLLSNIYAT 515

Query: 389 MKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKR 448
             +WD VA+IR  + +  + K PG S IE+ +VVHEF  GD+ HP    I+  L+E+E  
Sbjct: 516 AGRWDQVAKIRTLLNDKGIKKAPGCSSIEIDSVVHEFIIGDKFHPRNREIYRMLEEMEML 575

Query: 449 MKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDC 508
           M+  G+VPD    L  + EE KE  L  HSEKLAIAFGLI    GT + + KNLRVC +C
Sbjct: 576 MEETGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNC 635

Query: 509 HRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           H ATK IS I KREII RD TR H  KDG  SC DYW
Sbjct: 636 HEATKLISKIYKREIIARDRTRLHLLKDGVWSCHDYW 672



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 73/253 (28%), Positives = 113/253 (44%), Gaps = 37/253 (14%)

Query: 117 LDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLS 176
           L  A+ +F+     +++ W  M  G+       NS +   LKL   MI LG+ PN+ S  
Sbjct: 15  LSYAISIFETIQEPNLLIWNTMFRGH-----ALNSDSVTALKLYVCMISLGLLPNSYSFP 69

Query: 177 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK 236
            +L  C+   +L  G+Q+H  V K     D    T LISMY + G LEDA K+F     +
Sbjct: 70  FLLKSCAKSKALIEGQQIHGHVLKLGYDLDMYVNTSLISMYAQNGRLEDAHKVFDRSSHR 129

Query: 237 DVVTWNAMISGYAQHGKGEKALRLFDK-------------------------------MK 265
            VV++ A+I+GYA  G    A +LFD+                               M 
Sbjct: 130 HVVSYTALITGYASRGYINNARKLFDEISVKDVVSWNAMISGYVETCNFKEALELYKDMM 189

Query: 266 DEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKL 325
              +KPD  T V ++ AC  +G ++LG Q   S + D+G  +       ++DL  + G++
Sbjct: 190 KTNVKPDESTMVTVVSACAQSGSIELGRQ-LHSWIEDHGFGSNIKIVNVLIDLYSKCGEV 248

Query: 326 VEAVDLIKKMPFK 338
             A  L + +  K
Sbjct: 249 ETACGLFQGLAKK 261


>gi|21780142|gb|AAM77644.1|AF517844_1 hypothetical protein [Arabidopsis thaliana]
          Length = 603

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 221/528 (41%), Positives = 309/528 (58%), Gaps = 14/528 (2%)

Query: 26  AQELFDKIPQPDVVSYNIMLS--CILLNSDDVVAAF-DFFQRLPIKDTASWNTMISGFVQ 82
           A+ LF+ + +PD+V +N M        N  +V + F +  +   + D  ++ +++     
Sbjct: 82  ARHLFEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLLKACAV 141

Query: 83  KKNMAKARDLF-LAMP---EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAM 138
            K + + R L  L+M    + N      +I+ Y EC  +D A  +F       VV + AM
Sbjct: 142 AKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARXVFDRIVEPCVVCYNAM 201

Query: 139 ISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLV 198
           I+GY +      +   + L L R M G  ++PN  +L SVL  C+ L SL LGK +H+  
Sbjct: 202 ITGYAR-----RNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKWIHKYA 256

Query: 199 FKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKAL 258
            K   CK     T LI M+ KCG L+DA  +F +++ KD   W+AMI  YA HGK EK++
Sbjct: 257 KKHSFCKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKSM 316

Query: 259 RLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDL 318
            +F++M+ E ++PD ITF+ LL AC+H G V+ G +YF  MV+ +GI     HY  MVDL
Sbjct: 317 LMFERMRSENVQPDEITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKHYGSMVDL 376

Query: 319 LGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGC 378
           L  AG L +A + I K+P  P P ++  LL+AC  H  LDLAE  +  +F L+ ++  G 
Sbjct: 377 LSXAGNLEDAYEFIDKLPISPTPMLWRILLAACSSHNNLDLAEKVSERIFELDDSH-GGD 435

Query: 379 YVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSI 438
           YV L+N+YA  KKW+ V  +R  MK+   VK+PG S IEV  VVHEF SGD V      +
Sbjct: 436 YVILSNLYARNKKWEYVDSLRKVMKDRKAVKVPGCSSIEVNNVVHEFFSGDGVKSATTKL 495

Query: 439 HEKLKELEKRMKLAGYVPDLEFALHA-VGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIR 497
           H  L E+ K +KL+GYVPD    +HA + ++ KE  L +HSEKLAI FGL+  P GT IR
Sbjct: 496 HRALDEMVKELKLSGYVPDTSMVVHANMNDQEKEITLRYHSEKLAITFGLLNTPPGTTIR 555

Query: 498 VFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           V KNLRVC DCH A K IS I  R+++ RD  RFHHF+DG CSCGD+W
Sbjct: 556 VVKNLRVCRDCHNAAKLISLIFGRKVVXRDVQRFHHFEDGKCSCGDFW 603


>gi|224115100|ref|XP_002332237.1| predicted protein [Populus trichocarpa]
 gi|222831850|gb|EEE70327.1| predicted protein [Populus trichocarpa]
          Length = 444

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 211/450 (46%), Positives = 278/450 (61%), Gaps = 6/450 (1%)

Query: 96  MPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAED 155
           MPEK+ VS +AMI+ Y + G +D+A  LF     +  + W  MI GY + G        +
Sbjct: 1   MPEKSLVSLTAMITCYAKYGMIDEARVLFDGLEERDAICWNVMIDGYAQHGL-----PNE 55

Query: 156 GLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLIS 215
           GL L R M+   +RPN  ++ +VL  C    +L+ G+ VH  +  + +  +    T LI 
Sbjct: 56  GLLLFRQMLNAKVRPNEVTVLAVLSACGQTGALETGRWVHSYIENNGIGINVRVGTSLID 115

Query: 216 MYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSIT 275
           MY KCG LEDA  +F  I  KDVV WN+M+ GYA HG  + ALRLF +M   G +P  IT
Sbjct: 116 MYSKCGSLEDARLVFERISNKDVVAWNSMVVGYAMHGFSQDALRLFKEMCMIGYQPTDIT 175

Query: 276 FVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335
           F+ +L AC+HAGLV  G ++F SM ++YGI  K +HY CMV+LLGRAG L EA +L+K M
Sbjct: 176 FIGVLNACSHAGLVSEGWKFFYSMKDEYGIEPKVEHYGCMVNLLGRAGYLEEAYELVKNM 235

Query: 336 PFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDV 395
                P ++GTLL ACR+H  + L E  A  L + N AN +G YV L+NIYAA   W+ V
Sbjct: 236 EIDQDPVLWGTLLGACRLHGNIALGEQIAEYLVSQNLAN-SGTYVLLSNIYAAAGNWEGV 294

Query: 396 ARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYV 455
           AR+R  MKE+   K PG S IEV   VHEF +GD  HP+   I+E L+E+   +K  GY 
Sbjct: 295 ARVRTLMKESGFEKEPGCSSIEVNNKVHEFLAGDLRHPKSREIYEMLEEINGWLKTHGYT 354

Query: 456 PDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYI 515
           P  +  LH + +  KE+ L  HSEKLA+AFGLI    GT I++ KNLRVC DCH  TK I
Sbjct: 355 PQTDIVLHDLEDAQKERSLGVHSEKLALAFGLITTKPGTTIKIVKNLRVCADCHAVTKLI 414

Query: 516 SAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           S I  R++++RD  RFHHF +G CSCGDYW
Sbjct: 415 SKITGRKVVMRDRNRFHHFVNGLCSCGDYW 444


>gi|449437930|ref|XP_004136743.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Cucumis sativus]
          Length = 666

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 222/533 (41%), Positives = 315/533 (59%), Gaps = 17/533 (3%)

Query: 23  LKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTA----SWNTMIS 78
           L DA+E+FD++PQ +VVS+  M+S           A + F  +   DT     ++ T+++
Sbjct: 141 LGDAREMFDEMPQKNVVSWTAMISA-YSQRGFAFEALNLFVEMLRSDTEPNHFTFATILT 199

Query: 79  GFVQKKNMAKARDLFLAMPEKNSVSW----SAMISGYIECGQLDKAVELFKVAPVKSVVA 134
                      R +     ++N  S     S+++  Y + G++  A  +F   P + VVA
Sbjct: 200 SCYGSLGFETGRQIHSIAIKRNYESHMFVGSSLLDMYAKSGRICDAHGVFHCLPERDVVA 259

Query: 135 WTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQV 194
            TA+ISGY + G       E+ LKL R +   G+  N+ + +SVL   S L++L  GKQV
Sbjct: 260 CTAIISGYAQMG-----LDEEALKLFRQLQIEGMNSNSVTYASVLTALSGLAALNHGKQV 314

Query: 195 HQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKG 254
           H  V +S        L  LI MY KCG++  A ++F  +  +  ++WNAM+ GY++HG  
Sbjct: 315 HSHVLRSGQYSYVVLLNSLIDMYSKCGNVCYARRIFDSMPERTCISWNAMLVGYSKHGMA 374

Query: 255 EKALRLFDKMKDEG-MKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDY-GIAAKPDHY 312
            + L LF  M++E  +KPDSIT++A+L  C+H  L D+G++ F +MVN   GI     HY
Sbjct: 375 REVLELFKLMREENKVKPDSITYLAVLSGCSHGQLEDMGLEIFYNMVNGKDGIEPDIGHY 434

Query: 313 TCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNP 372
            C+VDLLGRAG++ EA D IKKMPF P  AI+G+LL +CRVH  +++       L  L P
Sbjct: 435 GCVVDLLGRAGRVEEAFDFIKKMPFVPTAAIWGSLLGSCRVHSDVEIGIIVGQKLLELEP 494

Query: 373 ANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVH 432
            NA G YV L+N+YA+  KW+D+  IR  M+E  V K PG SW+E+  +VH F + D  H
Sbjct: 495 ENA-GNYVILSNLYASAGKWEDMRNIRDLMQEKAVTKEPGRSWVELDQIVHTFHASDHTH 553

Query: 433 PELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPL 492
           P    + +K+KEL  + K  GYVPDL   L+ V EE KE++LL HSEKLA+AFGLI  P 
Sbjct: 554 PRREEVAKKVKELSIKFKEDGYVPDLSCVLYDVDEEQKEKVLLGHSEKLALAFGLIATPE 613

Query: 493 GTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           GT IRV KNLR+C DCH   K++S +  R +I+RD  RFH+   G CSCGDYW
Sbjct: 614 GTTIRVIKNLRICVDCHSFAKFVSRLYARTVILRDKNRFHNIVGGVCSCGDYW 666



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 72/232 (31%), Positives = 117/232 (50%), Gaps = 6/232 (2%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI 164
           + +I  Y +C  L  A E+F   P K+VV+WTAMIS Y + G+     A + L L   M+
Sbjct: 129 TRLIVLYNKCDCLGDAREMFDEMPQKNVVSWTAMISAYSQRGF-----AFEALNLFVEML 183

Query: 165 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 224
                PN  + +++L  C      + G+Q+H +  K          + L+ MY K G + 
Sbjct: 184 RSDTEPNHFTFATILTSCYGSLGFETGRQIHSIAIKRNYESHMFVGSSLLDMYAKSGRIC 243

Query: 225 DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 284
           DA  +F  +  +DVV   A+ISGYAQ G  E+AL+LF +++ EGM  +S+T+ ++L A +
Sbjct: 244 DAHGVFHCLPERDVVACTAIISGYAQMGLDEEALKLFRQLQIEGMNSNSVTYASVLTALS 303

Query: 285 HAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 336
               ++ G Q   S V   G  +       ++D+  + G +  A  +   MP
Sbjct: 304 GLAALNHGKQ-VHSHVLRSGQYSYVVLLNSLIDMYSKCGNVCYARRIFDSMP 354



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/184 (29%), Positives = 93/184 (50%), Gaps = 14/184 (7%)

Query: 159 LLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYC 218
           LL+M I LG         ++L  C    +++ G++VH  + K+         T LI +Y 
Sbjct: 78  LLQMAI-LGREVKFEGYDTILNECVSQRAIREGQRVHTHMIKTCYLPSVYLRTRLIVLYN 136

Query: 219 KCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVA 278
           KC  L DA ++F E+ +K+VV+W AMIS Y+Q G   +AL LF +M     +P+  TF  
Sbjct: 137 KCDCLGDAREMFDEMPQKNVVSWTAMISAYSQRGFAFEALNLFVEMLRSDTEPNHFTFAT 196

Query: 279 LLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCM------VDLLGRAGKLVEAVDLI 332
           +L +C        G   F++    + IA K ++ + M      +D+  ++G++ +A  + 
Sbjct: 197 ILTSC-------YGSLGFETGRQIHSIAIKRNYESHMFVGSSLLDMYAKSGRICDAHGVF 249

Query: 333 KKMP 336
             +P
Sbjct: 250 HCLP 253



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/194 (26%), Positives = 94/194 (48%), Gaps = 16/194 (8%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
           +S+L  +AK  G++ DA  +F  +P+ DVV+   ++S       D   A   F++L I+ 
Sbjct: 230 SSLLDMYAKS-GRICDAHGVFHCLPERDVVACTAIISGYAQMGLD-EEALKLFRQLQIEG 287

Query: 70  T-------ASWNTMISGFVQKKNMAKARDLFLAMPEKNSVS-WSAMISGYIECGQLDKAV 121
                   AS  T +SG     +  +     L   + + V   +++I  Y +CG +  A 
Sbjct: 288 MNSNSVTYASVLTALSGLAALNHGKQVHSHVLRSGQYSYVVLLNSLIDMYSKCGNVCYAR 347

Query: 122 ELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLG-IRPNASSLSSVLL 180
            +F   P ++ ++W AM+ GY K G      A + L+L ++M     ++P++ +  +VL 
Sbjct: 348 RIFDSMPERTCISWNAMLVGYSKHG-----MAREVLELFKLMREENKVKPDSITYLAVLS 402

Query: 181 GCSHLSSLQLGKQV 194
           GCSH     +G ++
Sbjct: 403 GCSHGQLEDMGLEI 416


>gi|356570919|ref|XP_003553630.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Glycine max]
          Length = 622

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 207/480 (43%), Positives = 296/480 (61%), Gaps = 9/480 (1%)

Query: 68  KDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVA 127
           +D    N+++  +    ++  AR +F  M   + VSW+ MI+GY  CG    A ELF   
Sbjct: 150 QDFYVQNSLVHMYASVGDINAARSVFQRMCRFDVVSWTCMIAGYHRCGDAKSARELFDRM 209

Query: 128 PVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSS 187
           P +++V W+ MISGY +     N+  E  ++    +   G+  N + +  V+  C+HL +
Sbjct: 210 PERNLVTWSTMISGYAR-----NNCFEKAVETFEALQAEGVVANETVMVGVISSCAHLGA 264

Query: 188 LQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISG 247
           L +G++ H+ V ++ L  +    T ++ MY +CG++E A  +F ++  KDV+ W A+I+G
Sbjct: 265 LAMGEKAHEYVMRNKLSLNLILGTAVVDMYARCGNVEKAVMVFEQLPEKDVLCWTALIAG 324

Query: 248 YAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAA 307
            A HG  EKAL  F +M  +G  P  ITF A+L AC+HAG+V+ G++ F+SM  D+G+  
Sbjct: 325 LAMHGYAEKALWYFSEMAKKGFVPRDITFTAVLTACSHAGMVERGLEIFESMKRDHGVEP 384

Query: 308 KPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNL 367
           + +HY CMVDLLGRAGKL +A   + KMP KP   I+  LL ACR+HK +++ E     L
Sbjct: 385 RLEHYGCMVDLLGRAGKLRKAEKFVLKMPVKPNAPIWRALLGACRIHKNVEVGERVGKIL 444

Query: 368 FNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRS 427
             + P   +G YV L+NIYA   KW DV  +R  MK+  V K PGYS IE+   VHEF  
Sbjct: 445 LEMQP-EYSGHYVLLSNIYARANKWKDVTVMRQMMKDKGVRKPPGYSLIEIDGKVHEFTI 503

Query: 428 GDRVHPELVSIHEKLKE--LEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAF 485
           GD+ HPE+  I E++ E  +  ++KLAGYV +    +  + EE KE  L  HSEKLAIA+
Sbjct: 504 GDKTHPEIEKI-ERIWEDIILPKIKLAGYVGNTAETMFDIDEEEKEGALHRHSEKLAIAY 562

Query: 486 GLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           G++K+   TPIR+ KNLRVC DCH ATK IS + + E+IVRD  RFHHFK+GTCSC DYW
Sbjct: 563 GIMKIRAPTPIRIVKNLRVCEDCHTATKLISKVFEVELIVRDRNRFHHFKEGTCSCMDYW 622



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 86/333 (25%), Positives = 145/333 (43%), Gaps = 64/333 (19%)

Query: 7   VNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP 66
           V+W  ++AG+ +  G  K A+ELFD++P+ ++V+++ M+S    N +    A + F+ L 
Sbjct: 184 VSWTCMIAGYHRC-GDAKSARELFDRMPERNLVTWSTMISGYARN-NCFEKAVETFEALQ 241

Query: 67  IKDTASWNTMISGFVQKKNMAKARDLFLAMPEK------------NSVSWSAMISGYIEC 114
            +   +  T++ G +       A    LAM EK            N +  +A++  Y  C
Sbjct: 242 AEGVVANETVMVGVISSCAHLGA----LAMGEKAHEYVMRNKLSLNLILGTAVVDMYARC 297

Query: 115 GQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASS 174
           G ++KAV +F+  P K V+ WTA+I+G    GY     AE  L     M   G  P   +
Sbjct: 298 GNVEKAVMVFEQLPEKDVLCWTALIAGLAMHGY-----AEKALWYFSEMAKKGFVPRDIT 352

Query: 175 LSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ 234
            ++VL  CSH   ++ G +    +F+S   K    + P +  Y                 
Sbjct: 353 FTAVLTACSHAGMVERGLE----IFES--MKRDHGVEPRLEHY----------------- 389

Query: 235 RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ 294
                    M+    + GK  KA +   KM    +KP++  + ALL AC     V++G  
Sbjct: 390 -------GCMVDLLGRAGKLRKAEKFVLKMP---VKPNAPIWRALLGACRIHKNVEVG-- 437

Query: 295 YFDSMVNDYGIAAKPD---HYTCMVDLLGRAGK 324
                V    +  +P+   HY  + ++  RA K
Sbjct: 438 ---ERVGKILLEMQPEYSGHYVLLSNIYARANK 467



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/235 (23%), Positives = 101/235 (42%), Gaps = 37/235 (15%)

Query: 135 WTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQV 194
           + A+I G       ENS+    +K LR     G+ P+  +   ++  C+ L +  +G Q 
Sbjct: 85  YNALIRGCSTSENPENSF-HYYIKALR----FGLLPDNITHPFLVKACAQLENAPMGMQT 139

Query: 195 HQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKG 254
           H    K    +D      L+ MY   GD+  A  +F  + R DVV+W  MI+GY + G  
Sbjct: 140 HGQAIKHGFEQDFYVQNSLVHMYASVGDINAARSVFQRMCRFDVVSWTCMIAGYHRCGDA 199

Query: 255 EKALRLFDKMKD-------------------------------EGMKPDSITFVALLLAC 283
           + A  LFD+M +                               EG+  +    V ++ +C
Sbjct: 200 KSARELFDRMPERNLVTWSTMISGYARNNCFEKAVETFEALQAEGVVANETVMVGVISSC 259

Query: 284 NHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 338
            H G + +G +  + ++ +  ++      T +VD+  R G + +AV + +++P K
Sbjct: 260 AHLGALAMGEKAHEYVMRN-KLSLNLILGTAVVDMYARCGNVEKAVMVFEQLPEK 313


>gi|356518183|ref|XP_003527761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Glycine max]
          Length = 1582

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 210/516 (40%), Positives = 303/516 (58%), Gaps = 45/516 (8%)

Query: 69   DTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSA------------------ 106
            D ASWN M+ G++   +  KA  L++ M E     N ++ +                   
Sbjct: 1073 DLASWNAMMHGYIVSGDFPKALRLYILMQESGERANQITLANAAKAAGGLVGLKQGKQIQ 1132

Query: 107  -------------MISG----YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVE 149
                         +ISG    Y++CG+++ A  +F   P    VAWT MISG      VE
Sbjct: 1133 AVVVKRGFNLDLFVISGVLDMYLKCGEMESARRIFNEIPSPDDVAWTTMISGC-----VE 1187

Query: 150  NSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTA 209
            N   E  L     M    ++P+  + ++++  CS L++L+ G+Q+H    K     D   
Sbjct: 1188 NGQEEHALFTYHHMRLSKVQPDEYTFATLVKACSLLTALEQGRQIHANTVKLNCAFDPFV 1247

Query: 210  LTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGM 269
            +T L+ MY KCG++EDA  LF       + +WNAMI G AQHG  E+AL+ F++MK  G+
Sbjct: 1248 MTSLVDMYAKCGNIEDARGLFKRTNTSRIASWNAMIVGLAQHGNAEEALQFFEEMKSRGV 1307

Query: 270  KPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAV 329
             PD +TF+ +L AC+H+GLV    + F SM   YGI  + +HY+C+VD L RAG++ EA 
Sbjct: 1308 TPDRVTFIGVLSACSHSGLVSEAYENFYSMQKIYGIEPEIEHYSCLVDALSRAGRIREAE 1367

Query: 330  DLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAM 389
             +I  MPF+   +++ TLL+ACRV    +  +  A  L  L P+++A  YV L+N+YAA 
Sbjct: 1368 KVISSMPFEASASMYRTLLNACRVQVDRETGKRVAEKLLALEPSDSA-AYVLLSNVYAAA 1426

Query: 390  KKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRM 449
             +W++VA  R  M++ NV K PG+SW+++   VH F +GDR H E   I+ K++ + KR+
Sbjct: 1427 NQWENVASARNMMRKANVKKDPGFSWVDLKNKVHLFVAGDRSHEETDVIYNKVEYIMKRI 1486

Query: 450  KLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCH 509
            +  GY+PD +FAL  V EE KE  L +HSEKLAIA+GL+K P  T +RV KNLRVCGDCH
Sbjct: 1487 REEGYLPDTDFALVDVEEEDKECSLYYHSEKLAIAYGLMKTPPSTTLRVIKNLRVCGDCH 1546

Query: 510  RATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
             A KYIS + +RE+++RD  RFHHF+ G CSCGDYW
Sbjct: 1547 NAIKYISKVFEREVVLRDANRFHHFRSGVCSCGDYW 1582



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 105/442 (23%), Positives = 174/442 (39%), Gaps = 103/442 (23%)

Query: 3    VKTTVNWNSVLAG-----FAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCIL-------- 49
            VK  + W+  +AG     +AK  G++++A+ LFD +   DVV +N+M+   +        
Sbjct: 754  VKIGLQWDVFVAGALVNIYAK-FGRIREARVLFDGMGLRDVVLWNVMMKAYVDTGLEYEA 812

Query: 50   -----------LNSDDVVAA---------------------------FDFFQRLPIKDTA 71
                       L  DDV                              F +       D  
Sbjct: 813  LLLFSEFNRTGLRPDDVTLCTLARVVKSKQNVLEWQLKQLKAYGTKLFMYDDDDDGSDVI 872

Query: 72   SWNTMISGFVQKKNMAKARDLFLAMPEK-------------------NSVSWSAMISG-- 110
            +WN  +S F+Q+    +A D F+ M                      N +     I G  
Sbjct: 873  AWNKTLSWFLQRGETWEAVDCFVDMINSRVACDGLTFVVMLSVVAGLNCLELGKQIHGIV 932

Query: 111  ------------------YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSW 152
                              Y++ G + +A  +F       +V+W  MISG    G  E S 
Sbjct: 933  VRSGLDQVVSVGNCLINMYVKTGSVSRARTVFWQMNEVDLVSWNTMISGCALSGLEECS- 991

Query: 153  AEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHL-SSLQLGKQVHQLVFKSPLCKDTTALT 211
                + +   ++  G+ P+  +++SVL  CS L     L  Q+H    K+ +  D+   T
Sbjct: 992  ----VGMFVDLLRGGLLPDQFTVASVLRACSSLGGGCHLATQIHACAMKAGVVLDSFVST 1047

Query: 212  PLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKP 271
             LI +Y K G +E+A  LF+     D+ +WNAM+ GY   G   KALRL+  M++ G + 
Sbjct: 1048 TLIDVYSKSGKMEEAEFLFVNQDGFDLASWNAMMHGYIVSGDFPKALRLYILMQESGERA 1107

Query: 272  DSITFVALLLACNHAGLVDL--GIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAV 329
            + IT      A    GLV L  G Q   ++V   G        + ++D+  + G++  A 
Sbjct: 1108 NQITLANAAKAA--GGLVGLKQGKQ-IQAVVVKRGFNLDLFVISGVLDMYLKCGEMESAR 1164

Query: 330  DLIKKMPFKPQPAIFGTLLSAC 351
             +  ++P  P    + T++S C
Sbjct: 1165 RIFNEIP-SPDDVAWTTMISGC 1185



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 80/175 (45%), Gaps = 9/175 (5%)

Query: 107 MISGYIECGQLDKAVELFKVAP--VKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI 164
           +I+ Y +CG L  A +LF   P   + +V W A++S +          A DG  L R++ 
Sbjct: 667 LITMYSKCGSLSSARKLFDTTPDTSRDLVTWNAILSAHA-------DKARDGFHLFRLLR 719

Query: 165 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 224
              +     +L+ V   C   +S    + +H    K  L  D      L+++Y K G + 
Sbjct: 720 RSFVSATRHTLAPVFKMCLLSASPSAAESLHGYAVKIGLQWDVFVAGALVNIYAKFGRIR 779

Query: 225 DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVAL 279
           +A  LF  +  +DVV WN M+  Y   G   +AL LF +    G++PD +T   L
Sbjct: 780 EARVLFDGMGLRDVVLWNVMMKAYVDTGLEYEALLLFSEFNRTGLRPDDVTLCTL 834



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 71/175 (40%), Gaps = 27/175 (15%)

Query: 177 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI--Q 234
           S+L      S L LGK+ H  +  S    D      LI+MY KCG L  A KLF      
Sbjct: 631 SILRHAIAASDLPLGKRAHARILTSGHHPDRFLTNNLITMYSKCGSLSSARKLFDTTPDT 690

Query: 235 RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC----------- 283
            +D+VTWNA++S +A   K      LF  ++   +     T   +   C           
Sbjct: 691 SRDLVTWNAILSAHAD--KARDGFHLFRLLRRSFVSATRHTLAPVFKMCLLSASPSAAES 748

Query: 284 NHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 338
            H   V +G+Q+      D  +A        +V++  + G++ EA  L   M  +
Sbjct: 749 LHGYAVKIGLQW------DVFVAG------ALVNIYAKFGRIREARVLFDGMGLR 791


>gi|302761610|ref|XP_002964227.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
 gi|300167956|gb|EFJ34560.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
          Length = 736

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 227/625 (36%), Positives = 334/625 (53%), Gaps = 88/625 (14%)

Query: 1   MNVKTTVNWNSVLAGFAK---QRGKLKDAQELFDKIPQ---PDVVSYNIML-SCILLN-- 51
           M  KT V WN+++AG+++    RG LK  Q++  K P+   PD ++++  L +C ++   
Sbjct: 120 MGKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVVGDI 179

Query: 52  ----------------SDDVV---------------AAFDFFQRLPIKDTASWNTMISGF 80
                           SD +V               +A   F RL  +D  +WNTMISG+
Sbjct: 180 SQGREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGY 239

Query: 81  VQKKNMAKARDLFLAM----PEKNSVSWSAMISG-------------------------- 110
            ++    +A +LF  M    P+ N V++  +++                           
Sbjct: 240 AKQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVKEHGYESDL 299

Query: 111 ---------YIECGQ-LDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLL 160
                    Y +C   L++A ++F+    + V+ W  +I  Y+++G      A+D L + 
Sbjct: 300 VIGNVLLNMYTKCSSSLEEARQVFERLRTRDVITWNILIVAYVQYGQ-----AKDALDIF 354

Query: 161 RMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKC 220
           + M    + PN  +LS+VL  C+ L + + GK VH L+       D      L++MY +C
Sbjct: 355 KQMQLENVAPNEITLSNVLSACAVLGAKRQGKAVHALIASGRCKADVVLENSLMNMYNRC 414

Query: 221 GDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 280
           G L+D   +F  I+ K +V+W+ +I+ YAQHG     L  F ++  EG+  D +T V+ L
Sbjct: 415 GSLDDTVGVFAAIRDKSLVSWSTLIAAYAQHGHSRTGLEHFWELLQEGLAADDVTMVSTL 474

Query: 281 LACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQ 340
            AC+H G++  G+Q F SMV D+G+A    H+ CMVDLL RAG+L  A +LI  MPF P 
Sbjct: 475 SACSHGGMLKEGVQSFLSMVGDHGLAPDYRHFLCMVDLLSRAGRLEAAENLIHDMPFLPD 534

Query: 341 PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRL 400
              + +LLS C++H     A   A  LF L   +       L+N+YA   +WDDV + R 
Sbjct: 535 AVAWTSLLSGCKLHNDTKRAARVADKLFELESEDEHSTVTLLSNVYAEAGRWDDVRKTR- 593

Query: 401 SMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEF 460
                   K PG S+IE+   VHEF +GD+ HPE   I  ++K L K+MK AGYVPD+  
Sbjct: 594 --NRRAARKNPGCSYIEINDTVHEFVAGDKSHPEEELIAAEIKRLSKQMKDAGYVPDMRM 651

Query: 461 ALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEK 520
            LH V EE KEQ+L +HSEKLAIA+GLI  P GTP+ + KNLR C DCH A K+IS I  
Sbjct: 652 VLHNVKEEEKEQMLCYHSEKLAIAYGLISTPPGTPLHIVKNLRACVDCHAAAKFISRIVG 711

Query: 521 REIIVRDTTRFHHFKDGTCSCGDYW 545
           R+I+VRD+TRFHHF++G+CSC DYW
Sbjct: 712 RKIVVRDSTRFHHFENGSCSCKDYW 736



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 82/277 (29%), Positives = 140/277 (50%), Gaps = 18/277 (6%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK----DTASWNTM 76
           G + DA  +F  I  P+ VS+ ++++    N      A  +++R+ ++    D A +   
Sbjct: 6   GSVADALAVFHAIEHPNSVSWTLIVAAFARNGH-YREALGYYRRMVLEGLRPDGAMFVVA 64

Query: 77  ISGFVQKKNMAKARDLFLAMPEKNSVSW-----SAMISGYIECGQLDKAVELFKVAPVKS 131
           I      K++ + + L   + E   + +     +A+I+ Y  C  L+ A + F     K+
Sbjct: 65  IGVCSSSKDLKQGQLLHAMILETQLLEFDIILGTALITMYARCRDLELARKTFDEMGKKT 124

Query: 132 VVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGL---GIRPNASSLSSVLLGCSHLSSL 188
           +V W A+I+GY +     N      LK+ + M+     G++P+A + SS L  CS +  +
Sbjct: 125 LVTWNALIAGYSR-----NGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVVGDI 179

Query: 189 QLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGY 248
             G+++      S    D+     LI+MY KCG LE A K+F  ++ +DV+ WN MISGY
Sbjct: 180 SQGREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGY 239

Query: 249 AQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNH 285
           A+ G   +AL LF +M     KP+ +TF+ LL AC +
Sbjct: 240 AKQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTN 276



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 80/283 (28%), Positives = 136/283 (48%), Gaps = 52/283 (18%)

Query: 111 YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRP 170
           Y +CG +  A+ +F      + V+WT +++ + + G+       + L   R M+  G+RP
Sbjct: 2   YGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYR-----EALGYYRRMVLEGLRP 56

Query: 171 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCK-DTTALTPLISMYCKCGDLEDACKL 229
           + +     +  CS    L+ G+ +H ++ ++ L + D    T LI+MY +C DLE A K 
Sbjct: 57  DGAMFVVAIGVCSSSKDLKQGQLLHAMILETQLLEFDIILGTALITMYARCRDLELARKT 116

Query: 230 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKM---KDEGMKPDSITFVALLLACNHA 286
           F E+ +K +VTWNA+I+GY+++G    AL+++  M     EGMKPD+ITF + L AC+  
Sbjct: 117 FDEMGKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVV 176

Query: 287 GLVDLGIQ-----------------------------------YFDSMVNDYGIAAKPDH 311
           G +  G +                                    FD + N   IA     
Sbjct: 177 GDISQGREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIA----- 231

Query: 312 YTCMVDLLGRAGKLVEAVDLIKKM-PFKPQPAI--FGTLLSAC 351
           +  M+    + G   +A++L ++M P  P+P +  F  LL+AC
Sbjct: 232 WNTMISGYAKQGAATQALELFQRMGPNDPKPNVVTFIGLLTAC 274



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 51/232 (21%), Positives = 96/232 (41%), Gaps = 41/232 (17%)

Query: 216 MYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSIT 275
           MY KCG + DA  +F  I+  + V+W  +++ +A++G   +AL  + +M  EG++PD   
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAM 60

Query: 276 FVALLLACN-----------HAGLVDLGIQYFD-----SMVNDYGIAAKPDHYTCMVDLL 319
           FV  +  C+           HA +++  +  FD     +++  Y      +      D +
Sbjct: 61  FVVAIGVCSSSKDLKQGQLLHAMILETQLLEFDIILGTALITMYARCRDLELARKTFDEM 120

Query: 320 GRA-------------------GKLVEAVDLIKKMP--FKPQPAIFGTLLSACRVHKRLD 358
           G+                    G L    D++ K P   KP    F + L AC V    D
Sbjct: 121 GKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVVG--D 178

Query: 359 LAEFAAMNLFNLNPANAAGCYVQ--LANIYAAMKKWDDVARIRLSMKENNVV 408
           +++   +    +    A+   VQ  L N+Y+     +   ++   +K  +V+
Sbjct: 179 ISQGREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVI 230


>gi|356528966|ref|XP_003533068.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Glycine max]
          Length = 712

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 220/549 (40%), Positives = 325/549 (59%), Gaps = 18/549 (3%)

Query: 6   TVNWNSVLAGFAKQRGKLKDAQELFDKIPQ----PDVVSYNIMLS-CILLNSDDVVAAFD 60
            V WN +L+G+ + + + K ++ LF ++ +    P+ V+  +MLS C  L   D+     
Sbjct: 173 VVTWNIMLSGYNRVK-QFKKSKMLFIEMEKRGVSPNSVTLVLMLSACSKLK--DLEGGKH 229

Query: 61  FFQRLP----IKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQ 116
            ++ +      ++    N +I  F     M +A+ +F  M  ++ +SW+++++G+   GQ
Sbjct: 230 IYKYINGGIVERNLILENVLIDMFAACGEMDEAQSVFDNMKNRDVISWTSIVTGFANIGQ 289

Query: 117 LDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLS 176
           +D A + F   P +  V+WTAMI GY++     N + E  L L R M    ++P+  ++ 
Sbjct: 290 IDLARKYFDQIPERDYVSWTAMIDGYLRM----NRFIE-ALALFREMQMSNVKPDEFTMV 344

Query: 177 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK 236
           S+L  C+HL +L+LG+ V   + K+ +  DT     LI MY KCG++  A K+F E+  K
Sbjct: 345 SILTACAHLGALELGEWVKTYIDKNSIKNDTFVGNALIDMYFKCGNVGKAKKVFKEMHHK 404

Query: 237 DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYF 296
           D  TW AMI G A +G GE+AL +F  M +  + PD IT++ +L AC HAG+V+ G  +F
Sbjct: 405 DKFTWTAMIVGLAINGHGEEALAMFSNMIEASITPDEITYIGVLCACTHAGMVEKGQSFF 464

Query: 297 DSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKR 356
            SM   +GI     HY CMVDLLGRAG+L EA ++I  MP KP   ++G+LL ACRVHK 
Sbjct: 465 ISMTMQHGIKPNVTHYGCMVDLLGRAGRLEEAHEVIVNMPVKPNSIVWGSLLGACRVHKN 524

Query: 357 LDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWI 416
           + LAE AA  +  L P N A  YV L NIYAA K+W+++ ++R  M E  + K PG S +
Sbjct: 525 VQLAEMAAKQILELEPENGA-VYVLLCNIYAACKRWENLRQVRKLMMERGIKKTPGCSLM 583

Query: 417 EVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLF 476
           E+   V+EF +GD+ HP+   I+ KL+ + + +  AGY PD       +GEE KE  L  
Sbjct: 584 ELNGNVYEFVAGDQSHPQSKEIYAKLENMMQDLIKAGYSPDTSEVFLDLGEEDKETALYR 643

Query: 477 HSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKD 536
           HSEKLAIA+ LI    G  IR+ KNLR+C DCH   K +S    RE+IVRD TRFHHF+ 
Sbjct: 644 HSEKLAIAYALISSGPGITIRIVKNLRMCVDCHHMAKLVSEAYNRELIVRDKTRFHHFRH 703

Query: 537 GTCSCGDYW 545
           G+CSC ++W
Sbjct: 704 GSCSCNNFW 712



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 103/428 (24%), Positives = 187/428 (43%), Gaps = 47/428 (10%)

Query: 17  AKQRGKLKDAQELFDKIPQPDVVSYNIMLSCI--LLNSDDVVAAFDFFQRLPIK-DTASW 73
           A + GK+  A+++FD IPQP +  +N M+     + +  + V+ +       IK D  ++
Sbjct: 51  AHESGKMIYARQVFDAIPQPTLFIWNTMIKGYSRINHPQNGVSMYLLMLASNIKPDRFTF 110

Query: 74  NTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMISGYIECGQLDKAVELFKVAPV 129
             ++ GF +   +   + L         + N     A I  +  C  +D A ++F +   
Sbjct: 111 PFLLKGFTRNMALQYGKVLLNHAVKHGFDSNLFVQKAFIHMFSLCRLVDLARKVFDMGDA 170

Query: 130 KSVVAWTAMISGYMKFGYVENSWAEDGLKLLRM-MIGLGIRPNASSLSSVLLGCSHLSSL 188
             VV W  M+SGY +    + S      K+L + M   G+ PN+ +L  +L  CS L  L
Sbjct: 171 WEVVTWNIMLSGYNRVKQFKKS------KMLFIEMEKRGVSPNSVTLVLMLSACSKLKDL 224

Query: 189 QLGKQVH-------------------------------QLVFKSPLCKDTTALTPLISMY 217
           + GK ++                               Q VF +   +D  + T +++ +
Sbjct: 225 EGGKHIYKYINGGIVERNLILENVLIDMFAACGEMDEAQSVFDNMKNRDVISWTSIVTGF 284

Query: 218 CKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFV 277
              G ++ A K F +I  +D V+W AMI GY +  +  +AL LF +M+   +KPD  T V
Sbjct: 285 ANIGQIDLARKYFDQIPERDYVSWTAMIDGYLRMNRFIEALALFREMQMSNVKPDEFTMV 344

Query: 278 ALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPF 337
           ++L AC H G ++LG ++  + ++   I         ++D+  + G + +A  + K+M  
Sbjct: 345 SILTACAHLGALELG-EWVKTYIDKNSIKNDTFVGNALIDMYFKCGNVGKAKKVFKEMHH 403

Query: 338 KPQPAIFGTLLS-ACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVA 396
           K +      ++  A   H    LA F+ M   ++ P       V  A  +A M +     
Sbjct: 404 KDKFTWTAMIVGLAINGHGEEALAMFSNMIEASITPDEITYIGVLCACTHAGMVEKGQSF 463

Query: 397 RIRLSMKE 404
            I ++M+ 
Sbjct: 464 FISMTMQH 471



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 61/261 (23%), Positives = 118/261 (45%), Gaps = 17/261 (6%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  +  ++W S++ GFA   G++  A++ FD+IP+ D VS+  M+    L  +  + A  
Sbjct: 269 MKNRDVISWTSIVTGFA-NIGQIDLARKYFDQIPERDYVSWTAMIDG-YLRMNRFIEALA 326

Query: 61  FFQRLPIKDTASWN-TMISGFVQKKNMAKAR--DLFLAMPEKNSVS-----WSAMISGYI 112
            F+ + + +      TM+S      ++      +      +KNS+       +A+I  Y 
Sbjct: 327 LFREMQMSNVKPDEFTMVSILTACAHLGALELGEWVKTYIDKNSIKNDTFVGNALIDMYF 386

Query: 113 ECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNA 172
           +CG + KA ++FK    K    WTAMI      G   N   E+ L +   MI   I P+ 
Sbjct: 387 KCGNVGKAKKVFKEMHHKDKFTWTAMI-----VGLAINGHGEEALAMFSNMIEASITPDE 441

Query: 173 SSLSSVLLGCSHLSSLQLGKQVH-QLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFL 231
            +   VL  C+H   ++ G+     +  +  +  + T    ++ +  + G LE+A ++ +
Sbjct: 442 ITYIGVLCACTHAGMVEKGQSFFISMTMQHGIKPNVTHYGCMVDLLGRAGRLEEAHEVIV 501

Query: 232 EIQRK-DVVTWNAMISGYAQH 251
            +  K + + W +++     H
Sbjct: 502 NMPVKPNSIVWGSLLGACRVH 522


>gi|356498282|ref|XP_003517982.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Glycine max]
          Length = 609

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 220/540 (40%), Positives = 312/540 (57%), Gaps = 28/540 (5%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIM----------LSCILLNSDDVVAAFDFFQRLPIKDT 70
             +  A  +FDKIPQPD+V +N M          L  ILL S  + +         + D 
Sbjct: 83  ASMDHAHRMFDKIPQPDIVLFNTMARGYARFDDPLRAILLCSQVLCSGL-------LPDD 135

Query: 71  ASWNTMISGFVQKKNMAKARDLF-LAMP---EKNSVSWSAMISGYIECGQLDKAVELFKV 126
            ++++++    + K + + + L  LA+      N      +I+ Y  C  +D A  +F  
Sbjct: 136 YTFSSLLKACARLKALEEGKQLHCLAVKLGVGDNMYVCPTLINMYTACNDVDAARRVFDK 195

Query: 127 APVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLS 186
                VVA+ A+I+   +     NS   + L L R +   G++P   ++   L  C+ L 
Sbjct: 196 IGEPCVVAYNAIITSCAR-----NSRPNEALALFRELQESGLKPTDVTMLVALSSCALLG 250

Query: 187 SLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMIS 246
           +L LG+ +H+ V K+   +     T LI MY KCG L+DA  +F ++ R+D   W+AMI 
Sbjct: 251 ALDLGRWIHEYVKKNGFDQYVKVNTALIDMYAKCGSLDDAVSVFKDMPRRDTQAWSAMIV 310

Query: 247 GYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIA 306
            YA HG G +A+ +  +MK   ++PD ITF+ +L AC+H GLV+ G +YF SM ++YGI 
Sbjct: 311 AYATHGHGSQAISMLREMKKAKVQPDEITFLGILYACSHTGLVEEGYEYFHSMTHEYGIV 370

Query: 307 AKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMN 366
               HY CM+DLLGRAG+L EA   I ++P KP P ++ TLLS+C  H  +++A+     
Sbjct: 371 PSIKHYGCMIDLLGRAGRLEEACKFIDELPIKPTPILWRTLLSSCSSHGNVEMAKLVIQR 430

Query: 367 LFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFR 426
           +F L+ ++  G YV L+N+ A   +WDDV  +R  M +   +K+PG S IEV  VVHEF 
Sbjct: 431 IFELDDSH-GGDYVILSNLCARNGRWDDVNHLRKMMVDKGALKVPGCSSIEVNNVVHEFF 489

Query: 427 SGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHA-VGEEVKEQLLLFHSEKLAIAF 485
           SGD VH     +H  L EL K +KLAGYVPD     +A + +E KE +L +HSEKLAI +
Sbjct: 490 SGDGVHSTSTILHHALDELVKELKLAGYVPDTSLVFYADIEDEEKEIVLRYHSEKLAITY 549

Query: 486 GLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           GL+  P GT IRV KNLRVC DCH A K+IS I  R+II+RD  RFHHFKDG CSCGDYW
Sbjct: 550 GLLNTPPGTTIRVVKNLRVCVDCHNAAKFISLIFGRQIILRDVQRFHHFKDGKCSCGDYW 609



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 65/273 (23%), Positives = 109/273 (39%), Gaps = 50/273 (18%)

Query: 167 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKC----GD 222
            + P +SS+ S++  C+ L  L   KQ+     K+    + T LT LI+ +C        
Sbjct: 30  ALEPPSSSILSLIPKCTSLREL---KQIQAYTIKTHQ-NNPTVLTKLIN-FCTSNPTIAS 84

Query: 223 LEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA 282
           ++ A ++F +I + D+V +N M  GYA+     +A+ L  ++   G+ PD  TF +LL A
Sbjct: 85  MDHAHRMFDKIPQPDIVLFNTMARGYARFDDPLRAILLCSQVLCSGLLPDDYTFSSLLKA 144

Query: 283 CN-----------HAGLVDLGI----QYFDSMVNDYGIAAKPD---------------HY 312
           C            H   V LG+        +++N Y      D                Y
Sbjct: 145 CARLKALEEGKQLHCLAVKLGVGDNMYVCPTLINMYTACNDVDAARRVFDKIGEPCVVAY 204

Query: 313 TCMVDLLGRAGKLVEAVDLIKKMP---FKPQPAIFGTLLSACRVHKRLDLA----EFAAM 365
             ++    R  +  EA+ L +++     KP        LS+C +   LDL     E+   
Sbjct: 205 NAIITSCARNSRPNEALALFRELQESGLKPTDVTMLVALSSCALLGALDLGRWIHEYVKK 264

Query: 366 NLFNLNPANAAGCYVQLANIYAAMKKWDDVARI 398
           N F+            L ++YA     DD   +
Sbjct: 265 NGFD----QYVKVNTALIDMYAKCGSLDDAVSV 293


>gi|449448280|ref|XP_004141894.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Cucumis sativus]
 gi|449513125|ref|XP_004164238.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Cucumis sativus]
          Length = 645

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 213/470 (45%), Positives = 284/470 (60%), Gaps = 6/470 (1%)

Query: 76  MISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAW 135
           ++  + +  ++  AR LF  MPE++ VS + M++ Y + G+LDKA  LF+    + VV W
Sbjct: 182 LVDVYARGGDVVCARQLFDKMPERSLVSLTTMLTCYSKMGELDKARSLFEGMKERDVVCW 241

Query: 136 TAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVH 195
             MI GY + G    S     LKL R M+     PN  ++ +VL  C  L +L+ G+ +H
Sbjct: 242 NVMIGGYAQSGVPNES-----LKLFRRMLVAKAIPNEVTVLAVLSACGQLGALESGRWIH 296

Query: 196 QLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGE 255
             +    +  +    T LI MY KCG LEDA  +F  I+ KDVV WN+MI GYA HG  +
Sbjct: 297 SYIENKGIQINVHVGTALIDMYSKCGSLEDARLVFDRIRDKDVVAWNSMIVGYAMHGFSQ 356

Query: 256 KALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCM 315
            AL+LF++M + G KP  ITF+ +L AC H GLV+ G  +F  M + YGI  K +HY CM
Sbjct: 357 HALQLFEEMTETGHKPTDITFIGILSACGHGGLVEEGRSFFRLMRDKYGIEPKIEHYGCM 416

Query: 316 VDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANA 375
           V+LLGRAG L EA  L+K M     P ++GTLL  CR+H  + L E  A  L +   AN 
Sbjct: 417 VNLLGRAGHLEEAYGLVKNMTIAADPVLWGTLLGCCRLHVNIKLGEEIAKFLVDQKLAN- 475

Query: 376 AGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPEL 435
           +G YV L+N+YAA   W+ VA++R  MKE+ + K  G S IEV   VHEF +G+R HP+ 
Sbjct: 476 SGTYVLLSNMYAATGNWEGVAKMRTLMKEHGIEKEHGCSSIEVDNKVHEFVAGERKHPKS 535

Query: 436 VSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTP 495
             I+  L E+   +K  GY P  +  LH + EE KEQ L  HSEKLAIAFGLI    GT 
Sbjct: 536 KEIYVMLNEINSWLKARGYTPQTDVVLHDLREEQKEQSLEVHSEKLAIAFGLISTKPGTT 595

Query: 496 IRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           +++ KNLRVC DCH   K IS I  R+I++RD  RFHHF+DG CSCGDYW
Sbjct: 596 VKIVKNLRVCSDCHTVMKMISEITGRKIVMRDRNRFHHFEDGLCSCGDYW 645



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 69/246 (28%), Positives = 116/246 (47%), Gaps = 35/246 (14%)

Query: 111 YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRP 170
           Y   G+LD +V +F      +V +++A+I  +     V++   +        M+  G+ P
Sbjct: 89  YAALGRLDCSVFVFNTFDEPNVFSFSAIIHSH-----VQSRLFDRAFGYYSQMLSCGVEP 143

Query: 171 NASSLSSVLLGCS-------HLSSLQLGKQ---------------------VHQLVFKSP 202
           NA + SSVL  CS       H  +++LG                         QL  K P
Sbjct: 144 NAFTFSSVLKSCSLESGKVLHCQAIKLGLGSDLYVRTGLVDVYARGGDVVCARQLFDKMP 203

Query: 203 LCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFD 262
             +   +LT +++ Y K G+L+ A  LF  ++ +DVV WN MI GYAQ G   ++L+LF 
Sbjct: 204 E-RSLVSLTTMLTCYSKMGELDKARSLFEGMKERDVVCWNVMIGGYAQSGVPNESLKLFR 262

Query: 263 KMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRA 322
           +M      P+ +T +A+L AC   G ++ G ++  S + + GI       T ++D+  + 
Sbjct: 263 RMLVAKAIPNEVTVLAVLSACGQLGALESG-RWIHSYIENKGIQINVHVGTALIDMYSKC 321

Query: 323 GKLVEA 328
           G L +A
Sbjct: 322 GSLEDA 327



 Score = 43.9 bits (102), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 34/144 (23%), Positives = 64/144 (44%), Gaps = 5/144 (3%)

Query: 193 QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHG 252
           Q+H  + +  L  +      L   Y   G L+ +  +F      +V +++A+I  + Q  
Sbjct: 65  QIHASLLRRGLYHNPILNFKLQRSYAALGRLDCSVFVFNTFDEPNVFSFSAIIHSHVQSR 124

Query: 253 KGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY 312
             ++A   + +M   G++P++ TF ++L +C+      L  Q         G+ +     
Sbjct: 125 LFDRAFGYYSQMLSCGVEPNAFTFSSVLKSCSLESGKVLHCQAI-----KLGLGSDLYVR 179

Query: 313 TCMVDLLGRAGKLVEAVDLIKKMP 336
           T +VD+  R G +V A  L  KMP
Sbjct: 180 TGLVDVYARGGDVVCARQLFDKMP 203


>gi|15227619|ref|NP_180537.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75100656|sp|O82380.1|PP175_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g29760, chloroplastic; Flags: Precursor
 gi|3582328|gb|AAC35225.1| hypothetical protein [Arabidopsis thaliana]
 gi|330253207|gb|AEC08301.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 738

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 215/551 (39%), Positives = 321/551 (58%), Gaps = 16/551 (2%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCIL--------LNSDDV 55
           K  V+WNS++ GF  Q+G    A ELF K+   DV + ++ +  +L        L     
Sbjct: 195 KDVVSWNSMINGFV-QKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQ 253

Query: 56  VAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECG 115
           V ++    R+ +  T + N M+  + +  ++  A+ LF AM EK++V+W+ M+ GY    
Sbjct: 254 VCSYIEENRVNVNLTLA-NAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISE 312

Query: 116 QLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSL 175
             + A E+    P K +VAW A+IS Y + G       E  +    + +   ++ N  +L
Sbjct: 313 DYEAAREVLNSMPQKDIVAWNALISAYEQNGKPN----EALIVFHELQLQKNMKLNQITL 368

Query: 176 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR 235
            S L  C+ + +L+LG+ +H  + K  +  +    + LI MY KCGDLE + ++F  +++
Sbjct: 369 VSTLSACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEK 428

Query: 236 KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQY 295
           +DV  W+AMI G A HG G +A+ +F KM++  +KP+ +TF  +  AC+H GLVD     
Sbjct: 429 RDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESL 488

Query: 296 FDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHK 355
           F  M ++YGI  +  HY C+VD+LGR+G L +AV  I+ MP  P  +++G LL AC++H 
Sbjct: 489 FHQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHA 548

Query: 356 RLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSW 415
            L+LAE A   L  L P N  G +V L+NIYA + KW++V+ +R  M+   + K PG S 
Sbjct: 549 NLNLAEMACTRLLELEPRN-DGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGCSS 607

Query: 416 IEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAV-GEEVKEQLL 474
           IE+  ++HEF SGD  HP    ++ KL E+ +++K  GY P++   L  +  EE+KEQ L
Sbjct: 608 IEIDGMIHEFLSGDNAHPMSEKVYGKLHEVMEKLKSNGYEPEISQVLQIIEEEEMKEQSL 667

Query: 475 LFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHF 534
             HSEKLAI +GLI       IRV KNLRVCGDCH   K IS +  REIIVRD  RFHHF
Sbjct: 668 NLHSEKLAICYGLISTEAPKVIRVIKNLRVCGDCHSVAKLISQLYDREIIVRDRYRFHHF 727

Query: 535 KDGTCSCGDYW 545
           ++G CSC D+W
Sbjct: 728 RNGQCSCNDFW 738



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 105/428 (24%), Positives = 191/428 (44%), Gaps = 90/428 (21%)

Query: 11  SVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFF------QR 64
           + L+ FA     L+ A+++FD+IP+P+  ++N ++       D V++ + F       Q 
Sbjct: 72  AALSSFAS----LEYARKVFDEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQC 127

Query: 65  LPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVS-----WSAMISGYIECGQLDK 119
            P K T  +  +I    +  +++  + L   M  K++V       +++I  Y  CG LD 
Sbjct: 128 YPNKYTFPF--LIKAAAEVSSLSLGQSLH-GMAVKSAVGSDVFVANSLIHCYFSCGDLDS 184

Query: 120 AVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVL 179
           A ++F     K VV+W +MI+G+++ G       +  L+L + M    ++ +  ++  VL
Sbjct: 185 ACKVFTTIKEKDVVSWNSMINGFVQKGS-----PDKALELFKKMESEDVKASHVTMVGVL 239

Query: 180 LGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ----- 234
             C+ + +L+ G+QV   + ++ +  + T    ++ MY KCG +EDA +LF  ++     
Sbjct: 240 SACAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNV 299

Query: 235 --------------------------RKDVVTWNAMISGYAQHGKGEKALRLFDKMK-DE 267
                                     +KD+V WNA+IS Y Q+GK  +AL +F +++  +
Sbjct: 300 TWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQK 359

Query: 268 GMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLV- 326
            MK + IT V+ L AC   G ++LG ++  S +  +GI       + ++ +  + G L  
Sbjct: 360 NMKLNQITLVSTLSACAQVGALELG-RWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEK 418

Query: 327 ------------------------------EAVDLIKKMP---FKPQPAIFGTLLSACRV 353
                                         EAVD+  KM     KP    F  +  AC  
Sbjct: 419 SREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSH 478

Query: 354 HKRLDLAE 361
              +D AE
Sbjct: 479 TGLVDEAE 486



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 99/383 (25%), Positives = 161/383 (42%), Gaps = 40/383 (10%)

Query: 115 GQLDKAVELFKVAPVKSVVAWTAMISGYMKF-GYVENSWAEDGLKLLRMMIGLGIRPNAS 173
             L+ A ++F   P  +  AW  +I  Y      V + WA      L M+      PN  
Sbjct: 78  ASLEYARKVFDEIPKPNSFAWNTLIRAYASGPDPVLSIWA-----FLDMVSESQCYPNKY 132

Query: 174 SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI 233
           +   ++   + +SSL LG+ +H +  KS +  D      LI  Y  CGDL+ ACK+F  I
Sbjct: 133 TFPFLIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTI 192

Query: 234 QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGI 293
           + KDVV+WN+MI+G+ Q G  +KAL LF KM+ E +K   +T V +L AC     ++ G 
Sbjct: 193 KEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGR 252

Query: 294 QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRV 353
           Q   S + +  +         M+D+  + G + +A  L   M  K     + T+L    +
Sbjct: 253 QVC-SYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDN-VTWTTMLDGYAI 310

Query: 354 HKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDV------ARIRLSMKENNV 407
            +  +    AA  + N  P      +  L + Y    K ++        +++ +MK N +
Sbjct: 311 SEDYE----AAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQI 366

Query: 408 VKMPGYS------------WIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYV 455
             +   S            WI      H  R    V   L+ ++ K  +LEK  ++   V
Sbjct: 367 TLVSTLSACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSV 426

Query: 456 PDLE----------FALHAVGEE 468
              +           A+H  G E
Sbjct: 427 EKRDVFVWSAMIGGLAMHGCGNE 449


>gi|212720716|ref|NP_001132746.1| uncharacterized protein LOC100194233 [Zea mays]
 gi|194695290|gb|ACF81729.1| unknown [Zea mays]
          Length = 539

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 213/546 (39%), Positives = 318/546 (58%), Gaps = 14/546 (2%)

Query: 7   VNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCIL---LNSDDVVAAFDFFQ 63
           ++WN ++ G+ K  G L+ A++LFD++P  +V ++N M++ +    LN + +   F   +
Sbjct: 1   MSWNILIGGYVKN-GDLETARKLFDEMPARNVATWNAMVAGLTNSGLNEESLGFFFAMRR 59

Query: 64  RLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMISGYIECGQLDK 119
                D     ++       +++   R +   +     +++    S++   Y+ CG L  
Sbjct: 60  EGMQPDEYGLGSLFRCCAGLRDVVSGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGFLRD 119

Query: 120 AVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVL 179
                +  P  ++V+    ISG       +N  AE  L+   +M G G+  NA +  S +
Sbjct: 120 GEAALRALPSLNIVSCNTTISGR-----TQNGDAEGALEFFCLMRGAGVEANAVTFVSAV 174

Query: 180 LGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVV 239
             CS L++L  G+Q+H L  K+ + K    +T L+ MY +CG L D+ ++ LE    D+V
Sbjct: 175 TSCSDLAALAQGQQIHALAIKTGVDKVVPVMTSLVHMYSRCGCLGDSERVCLEYSGTDLV 234

Query: 240 TWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSM 299
             +AMIS Y  HG G+KA+ LF +M   G +P+ +TF+ LL AC+H+GL D G+  F+ M
Sbjct: 235 LCSAMISAYGFHGHGQKAVGLFKQMMAAGAEPNEVTFLTLLYACSHSGLKDEGMNCFELM 294

Query: 300 VNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDL 359
              YG+     HYTC+VDLLGR+G L EA DLI  MP +P   I+ TLLSAC+  K+ D+
Sbjct: 295 TKTYGLQPSVKHYTCIVDLLGRSGCLNEAEDLILSMPVQPDGVIWKTLLSACKTQKKFDM 354

Query: 360 AEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVG 419
           AE  A  +  L+P ++A  YV L+NI A   +W+DV+++R +M+E NV K PG SW+E+ 
Sbjct: 355 AERIAERVIELDPHDSAS-YVLLSNIRATSSRWEDVSKVRETMREQNVRKEPGVSWVELK 413

Query: 420 TVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSE 479
             +H+F +GD  H     I E L+E+  R++  GY PD+    H + +E KE  L  HSE
Sbjct: 414 GQIHQFCTGDESHSRQREIVECLEEMMTRIRQCGYAPDMSMVFHDMEDEEKEVSLAHHSE 473

Query: 480 KLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTC 539
           KLAIAF  + +P G PIRV KNLRVC DCH A K +S +  REI+VRD +RFHHFKDG C
Sbjct: 474 KLAIAFAFLSLPEGVPIRVMKNLRVCDDCHVAIKLMSKVIGREIVVRDVSRFHHFKDGKC 533

Query: 540 SCGDYW 545
           SCGDYW
Sbjct: 534 SCGDYW 539


>gi|225439325|ref|XP_002267596.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Vitis vinifera]
          Length = 623

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 211/517 (40%), Positives = 307/517 (59%), Gaps = 9/517 (1%)

Query: 29  LFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAK 88
           L D +  P +V     L CI + S    A     +    KD    N+++  +    +   
Sbjct: 116 LPDNLTFPFLVKSCTKLHCISMGSQ---AHGHIIKHGFEKDVYVQNSLVHMYATFGDTEA 172

Query: 89  ARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYV 148
           A  +F  M   + VSW++MI G+ +CG ++ A +LF   P K++V W+ MISGY      
Sbjct: 173 ATLIFQRMYYVDVVSWTSMIRGFNKCGDVESARKLFDQMPEKNLVTWSTMISGY-----A 227

Query: 149 ENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTT 208
           +N+  +  ++L +++   G+R N + + SV+  C+HL +L+LG++ H  V K+ +  +  
Sbjct: 228 QNNHFDKAVELFKVLQSQGVRANETVMVSVISSCAHLGALELGERAHDYVVKNGMTLNLI 287

Query: 209 ALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEG 268
             T L+ MY +CG ++ A  +F ++  +D ++W A+I+G A HG  E++L+ F  M + G
Sbjct: 288 LGTALVDMYARCGSIDKAVWVFEDLPERDTLSWTALIAGLAMHGYSERSLKYFATMVEAG 347

Query: 269 MKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEA 328
           + P  ITF A+L AC+H GLV+ G Q F+SM  D+ +  + +HY CMVDLLGRAGKL EA
Sbjct: 348 LTPRDITFTAVLSACSHGGLVERGFQIFESMKRDHRVEPRLEHYGCMVDLLGRAGKLEEA 407

Query: 329 VDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAA 388
              + KMP KP   ++G LL ACR+HK  ++ E     L  L P + +G YV L+NIYA 
Sbjct: 408 ERFVLKMPVKPNAPVWGALLGACRIHKNAEIGERVGKILIQLLPQH-SGYYVLLSNIYAN 466

Query: 389 MKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKR 448
            K+W+ V  +R  MK   + K PG+S IE+   VH+F  GD  HPE+  I    +E+  R
Sbjct: 467 AKEWEKVTEMRQMMKAKGLKKPPGHSLIELDGRVHKFTIGDSSHPEMDKIERMWEEILMR 526

Query: 449 MKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDC 508
           ++ AGY  +   AL  + EE KE  L  HSEKLAIAFG+++   GTPIR+ KNLRVC DC
Sbjct: 527 IRAAGYRGNTADALFDIDEEEKESALHRHSEKLAIAFGMMRSEAGTPIRIVKNLRVCEDC 586

Query: 509 HRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           H ATK IS +  RE+IVRD  RFHHF+ G CSC DYW
Sbjct: 587 HTATKLISKVFGRELIVRDRNRFHHFRQGLCSCMDYW 623



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/268 (26%), Positives = 130/268 (48%), Gaps = 25/268 (9%)

Query: 7   VNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNS--DDVVAAFDFFQR 64
           V+W S++ GF K  G ++ A++LFD++P+ ++V+++ M+S    N+  D  V  F   Q 
Sbjct: 186 VSWTSMIRGFNKC-GDVESARKLFDQMPEKNLVTWSTMISGYAQNNHFDKAVELFKVLQS 244

Query: 65  LPIKDTASWNTMISGFVQKKNMA------KARDLFLAMPEK-NSVSWSAMISGYIECGQL 117
             ++  A+   M+S      ++       +A D  +      N +  +A++  Y  CG +
Sbjct: 245 QGVR--ANETVMVSVISSCAHLGALELGERAHDYVVKNGMTLNLILGTALVDMYARCGSI 302

Query: 118 DKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSS 177
           DKAV +F+  P +  ++WTA+I+G    GY E S     LK    M+  G+ P   + ++
Sbjct: 303 DKAVWVFEDLPERDTLSWTALIAGLAMHGYSERS-----LKYFATMVEAGLTPRDITFTA 357

Query: 178 VLLGCSHLSSLQLGKQVHQLVFK----SPLCKDTTALTPLISMYCKCGDLEDACKLFLEI 233
           VL  CSH   ++ G Q+ + + +     P  +    +  L+    + G LE+A +  L++
Sbjct: 358 VLSACSHGGLVERGFQIFESMKRDHRVEPRLEHYGCMVDLLG---RAGKLEEAERFVLKM 414

Query: 234 QRK-DVVTWNAMISGYAQHGKGEKALRL 260
             K +   W A++     H   E   R+
Sbjct: 415 PVKPNAPVWGALLGACRIHKNAEIGERV 442



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 59/241 (24%), Positives = 106/241 (43%), Gaps = 35/241 (14%)

Query: 167 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 226
           G+ P+  +   ++  C+ L  + +G Q H  + K    KD      L+ MY   GD E A
Sbjct: 114 GLLPDNLTFPFLVKSCTKLHCISMGSQAHGHIIKHGFEKDVYVQNSLVHMYATFGDTEAA 173

Query: 227 CKLFLEIQRKDVVTWNA-------------------------------MISGYAQHGKGE 255
             +F  +   DVV+W +                               MISGYAQ+   +
Sbjct: 174 TLIFQRMYYVDVVSWTSMIRGFNKCGDVESARKLFDQMPEKNLVTWSTMISGYAQNNHFD 233

Query: 256 KALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCM 315
           KA+ LF  ++ +G++ +    V+++ +C H G ++LG +  D +V + G+       T +
Sbjct: 234 KAVELFKVLQSQGVRANETVMVSVISSCAHLGALELGERAHDYVVKN-GMTLNLILGTAL 292

Query: 316 VDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVH--KRLDLAEFAAMNLFNLNPA 373
           VD+  R G + +AV + + +P +   + +  L++   +H      L  FA M    L P 
Sbjct: 293 VDMYARCGSIDKAVWVFEDLPERDTLS-WTALIAGLAMHGYSERSLKYFATMVEAGLTPR 351

Query: 374 N 374
           +
Sbjct: 352 D 352



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 30/120 (25%), Positives = 63/120 (52%), Gaps = 13/120 (10%)

Query: 182 CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGD-------LEDACKLFLEIQ 234
           CS L+ L++   +H  + ++ +  D  A + LI+    C D       ++ A ++F +IQ
Sbjct: 27  CSDLTHLKI---IHAYMIRTHIICDVFAASRLIAF---CVDPSSGTSLIDYASRIFSQIQ 80

Query: 235 RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ 294
             ++  +NAMI G++     ++A   + + + +G+ PD++TF  L+ +C     + +G Q
Sbjct: 81  NPNLFIFNAMIRGHSGSKNPDQAFHFYVQSQRQGLLPDNLTFPFLVKSCTKLHCISMGSQ 140


>gi|449442683|ref|XP_004139110.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
 gi|449516005|ref|XP_004165038.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 609

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 224/579 (38%), Positives = 325/579 (56%), Gaps = 49/579 (8%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRL---- 65
           N +L   +     +  A  +FD  PQPD+  YN ++  +  ++     +F  F+ L    
Sbjct: 37  NKLLKQLSSIFAPISYAHMVFDHFPQPDLFLYNTIIKVLAFSTTSSADSFTKFRSLIREE 96

Query: 66  ---PIKDTASW---------------------------------NTMISGFVQKKNMAKA 89
              P + + ++                                 N +I  +V    +  A
Sbjct: 97  RLVPNQYSFAFAFKGCGSGVGVLEGEQVRVHAIKLGLENNLFVTNALIGMYVNLDFVVDA 156

Query: 90  RDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVE 149
           R +F   P ++  SW+ M+SGY   G++D+A +LF   P K VV+WT MISG ++ GY  
Sbjct: 157 RKVFDWSPNRDMYSWNIMLSGYARLGKMDEARQLFDEMPEKDVVSWTTMISGCLQVGYFM 216

Query: 150 NSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTA 209
                + L +   M+  G+ PN  +L+S L  C++L +L  G+ +H  + K+ +  +   
Sbjct: 217 -----EALDIFHNMLAKGMSPNEYTLASSLAACANLVALDQGRWMHVYIKKNNIQMNERL 271

Query: 210 LTPLISMYCKCGDLEDACKLFLEIQR--KDVVTWNAMISGYAQHGKGEKALRLFDKMKDE 267
           L  LI MY KCG+LE A KLF    R  + V  WNAMI G+A HGK ++A+ +F++MK E
Sbjct: 272 LAGLIDMYAKCGELEFASKLFNSNPRLKRKVWPWNAMIGGFAVHGKSKEAIEVFEQMKIE 331

Query: 268 GMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVE 327
            + P+ +TFVALL AC+H   V+ G  YF+SM + Y +  + +HY C+VDLLGRAG+L E
Sbjct: 332 KVSPNKVTFVALLNACSHGNRVEEGRYYFESMASHYRVKPELEHYGCLVDLLGRAGRLKE 391

Query: 328 AVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYA 387
           A ++I  M   P  AI+G LLSAC++HK  ++ E     +  L+P N  GC+V LANIY+
Sbjct: 392 AEEIISSMHLTPDVAIWGALLSACKIHKDAEMGERVGKIVKELDP-NHLGCHVLLANIYS 450

Query: 388 AMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEK 447
               W++   +R  + E+   K PG S IE+  + H+F  GDR HP+   ++  L E+  
Sbjct: 451 LTGNWNEARTLREKIAESGKKKTPGCSSIELNGMFHQFLVGDRSHPQTKQLYLFLDEMIT 510

Query: 448 RMKLAGYVPDL-EFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCG 506
           ++K+AGY+P+  E  L     E +E  LL HSEKLAIAFGL+     TPIR+ KNLRVC 
Sbjct: 511 KLKIAGYIPESGEVLLDIDDNEDRETALLKHSEKLAIAFGLMNTTPKTPIRIVKNLRVCS 570

Query: 507 DCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           DCH A K+IS +  REIIVRD  R+HHFKDGTCSC DYW
Sbjct: 571 DCHLAIKFISKVYDREIIVRDRIRYHHFKDGTCSCNDYW 609



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 65/265 (24%), Positives = 127/265 (47%), Gaps = 19/265 (7%)

Query: 8   NWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPI 67
           +WN +L+G+A+  GK+ +A++LFD++P+ DVVS+  M+S   L     + A D F  +  
Sbjct: 170 SWNIMLSGYARL-GKMDEARQLFDEMPEKDVVSWTTMISGC-LQVGYFMEALDIFHNMLA 227

Query: 68  KD-TASWNTMISGFVQKKNMA---KARDLFLAMPEKNSVSWSAMISG----YIECGQLDK 119
           K  + +  T+ S      N+    + R + + + + N      +++G    Y +CG+L+ 
Sbjct: 228 KGMSPNEYTLASSLAACANLVALDQGRWMHVYIKKNNIQMNERLLAGLIDMYAKCGELEF 287

Query: 120 AVELFKVAPV--KSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSS 177
           A +LF   P   + V  W AMI G+   G      +++ +++   M    + PN  +  +
Sbjct: 288 ASKLFNSNPRLKRKVWPWNAMIGGFAVHGK-----SKEAIEVFEQMKIEKVSPNKVTFVA 342

Query: 178 VLLGCSHLSSLQLGKQVHQLVFKSPLCK-DTTALTPLISMYCKCGDLEDACKLFLEIQ-R 235
           +L  CSH + ++ G+   + +      K +      L+ +  + G L++A ++   +   
Sbjct: 343 LLNACSHGNRVEEGRYYFESMASHYRVKPELEHYGCLVDLLGRAGRLKEAEEIISSMHLT 402

Query: 236 KDVVTWNAMISGYAQHGKGEKALRL 260
            DV  W A++S    H   E   R+
Sbjct: 403 PDVAIWGALLSACKIHKDAEMGERV 427


>gi|115465982|ref|NP_001056590.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|7363286|dbj|BAA93030.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113594630|dbj|BAF18504.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|215737111|dbj|BAG96040.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 734

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 234/623 (37%), Positives = 335/623 (53%), Gaps = 86/623 (13%)

Query: 1   MNVKTTVNWNSVLAGFAK----------------QRGKLKDAQELFDKIPQ--------- 35
           M V+  V WN+++AG+A+                + G+  D+  L   +P          
Sbjct: 120 MPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSITLVSVLPACANARALAA 179

Query: 36  -------------PDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQ 82
                         ++V+    +        D+ AA   F  +P K++ SWN MI G+ Q
Sbjct: 180 CREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQ 239

Query: 83  KKNMAKARDLFLAMPEK---------------------------------------NSVS 103
             +  +A  LF  M E+                                       N   
Sbjct: 240 NGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMRVHELLVRIGLDSNVSV 299

Query: 104 WSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMM 163
            +A+I+ Y +C ++D A  +F     ++ V+W AMI      G  +N  +ED ++L   M
Sbjct: 300 MNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMI-----LGCAQNGCSEDAVRLFTRM 354

Query: 164 IGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDL 223
               ++P++ +L SV+   + +S     + +H    +  L +D   LT LI MY KCG +
Sbjct: 355 QLENVKPDSFTLVSVIPALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRV 414

Query: 224 EDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC 283
             A  LF   + + V+TWNAMI GY  HG G+ A+ LF++MK  G+ P+  TF+++L AC
Sbjct: 415 NIARILFNSARERHVITWNAMIHGYGSHGFGKAAVELFEEMKSIGIVPNETTFLSVLSAC 474

Query: 284 NHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAI 343
           +HAGLVD G +YF SM  DYG+    +HY  MVDLLGRAGKL EA   I+KMP  P  ++
Sbjct: 475 SHAGLVDEGREYFTSMKEDYGLEPGMEHYGTMVDLLGRAGKLDEAWAFIQKMPMDPGLSV 534

Query: 344 FGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCY-VQLANIYAAMKKWDDVARIRLSM 402
           +G +L AC++HK ++LAE +A  +F L P    G Y V LANIYA    W DVAR+R +M
Sbjct: 535 YGAMLGACKLHKNVELAEESAQKIFELGPQE--GVYHVLLANIYANASMWKDVARVRTAM 592

Query: 403 KENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFAL 462
           ++N + K PG+S I++   +H F SG   H +   I+ +L +L + +K  GYVPD + ++
Sbjct: 593 EKNGLQKTPGWSIIQLKNEIHTFYSGSTNHQQAKEIYSRLAKLIEEIKAVGYVPDTD-SI 651

Query: 463 HAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKRE 522
           H V ++VK QLL  HSEKLAIAFGLI+   GT I++ KNLRVC DCH ATK IS +  RE
Sbjct: 652 HDVEDDVKAQLLNTHSEKLAIAFGLIRTAPGTTIQIKKNLRVCNDCHNATKLISLVTGRE 711

Query: 523 IIVRDTTRFHHFKDGTCSCGDYW 545
           II+RD  RFHHFKDG CSCGDYW
Sbjct: 712 IIMRDIQRFHHFKDGKCSCGDYW 734



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 83/308 (26%), Positives = 145/308 (47%), Gaps = 54/308 (17%)

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK-----NSVSW------------ 104
           F R+P++D  +WN +++G+ +      A ++ + M E+     +S++             
Sbjct: 117 FDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSITLVSVLPACANARA 176

Query: 105 -----------------------SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISG 141
                                  +A++  Y +CG +  A  +F   P K+ V+W AMI  
Sbjct: 177 LAACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMID- 235

Query: 142 YMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKS 201
               GY +N  + + L L   M+  G+     S+ + L  C  L  L  G +VH+L+ + 
Sbjct: 236 ----GYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMRVHELLVRI 291

Query: 202 PLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLF 261
            L  + + +  LI+MY KC  ++ A  +F E+ R+  V+WNAMI G AQ+G  E A+RLF
Sbjct: 292 GLDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLF 351

Query: 262 DKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDH----YTCMVD 317
            +M+ E +KPDS T V+++ A     L D+        ++ Y I    D      T ++D
Sbjct: 352 TRMQLENVKPDSFTLVSVIPA-----LADISDPLQARWIHGYSIRLHLDQDVYVLTALID 406

Query: 318 LLGRAGKL 325
           +  + G++
Sbjct: 407 MYAKCGRV 414



 Score =  111 bits (278), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 64/203 (31%), Positives = 113/203 (55%), Gaps = 4/203 (1%)

Query: 98  EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGL 157
           +  +++ +A+ + Y +C +   A  +F   PV+  VAW A+++GY + G    +      
Sbjct: 91  DSEALAATALANMYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAME---- 146

Query: 158 KLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMY 217
            ++RM    G RP++ +L SVL  C++  +L   ++ H    +S L +     T ++  Y
Sbjct: 147 MVVRMQEEEGERPDSITLVSVLPACANARALAACREAHAFAIRSGLEELVNVATAILDAY 206

Query: 218 CKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFV 277
           CKCGD+  A  +F  +  K+ V+WNAMI GYAQ+G   +AL LF++M +EG+    ++ +
Sbjct: 207 CKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVL 266

Query: 278 ALLLACNHAGLVDLGIQYFDSMV 300
           A L AC   G +D G++  + +V
Sbjct: 267 AALQACGELGCLDEGMRVHELLV 289



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/119 (33%), Positives = 66/119 (55%), Gaps = 1/119 (0%)

Query: 163 MIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGD 222
           M   G  P   + +S+L  C+    L  G+ VH  +    +  +  A T L +MY KC  
Sbjct: 50  MSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALANMYAKCRR 109

Query: 223 LEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMK-DEGMKPDSITFVALL 280
             DA ++F  +  +D V WNA+++GYA++G    A+ +  +M+ +EG +PDSIT V++L
Sbjct: 110 PADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSITLVSVL 168


>gi|125595802|gb|EAZ35582.1| hypothetical protein OsJ_19868 [Oryza sativa Japonica Group]
          Length = 734

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 234/623 (37%), Positives = 335/623 (53%), Gaps = 86/623 (13%)

Query: 1   MNVKTTVNWNSVLAGFAK----------------QRGKLKDAQELFDKIPQ--------- 35
           M V+  V WN+++AG+A+                + G+  D+  L   +P          
Sbjct: 120 MPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSITLVSVLPACANARALAA 179

Query: 36  -------------PDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQ 82
                         ++V+    +        D+ AA   F  +P K++ SWN MI G+ Q
Sbjct: 180 CREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQ 239

Query: 83  KKNMAKARDLFLAMPEK---------------------------------------NSVS 103
             +  +A  LF  M E+                                       N   
Sbjct: 240 NGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMRVHELLVRIGLDSNVSV 299

Query: 104 WSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMM 163
            +A+I+ Y +C ++D A  +F     ++ V+W AMI      G  +N  +ED ++L   M
Sbjct: 300 MNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMI-----LGCAQNGCSEDAVRLFTRM 354

Query: 164 IGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDL 223
               ++P++ +L SV+   + +S     + +H    +  L +D   LT LI MY KCG +
Sbjct: 355 QLENVKPDSFTLVSVIPALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRV 414

Query: 224 EDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC 283
             A  LF   + + V+TWNAMI GY  HG G+ A+ LF++MK  G+ P+  TF+++L AC
Sbjct: 415 NIARILFNSARERHVITWNAMIHGYGSHGFGKAAVELFEEMKSIGIVPNETTFLSVLSAC 474

Query: 284 NHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAI 343
           +HAGLVD G +YF SM  DYG+    +HY  MVDLLGRAGKL EA   I+KMP  P  ++
Sbjct: 475 SHAGLVDEGREYFTSMKEDYGLEPGMEHYGTMVDLLGRAGKLDEAWAFIQKMPMDPGLSV 534

Query: 344 FGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCY-VQLANIYAAMKKWDDVARIRLSM 402
           +G +L AC++HK ++LAE +A  +F L P    G Y V LANIYA    W DVAR+R +M
Sbjct: 535 YGAMLGACKLHKNVELAEESAQKIFELGPQE--GVYHVLLANIYANASMWKDVARVRTAM 592

Query: 403 KENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFAL 462
           ++N + K PG+S I++   +H F SG   H +   I+ +L +L + +K  GYVPD + ++
Sbjct: 593 EKNGLQKTPGWSIIQLKNEIHTFYSGSTNHQQAKEIYSRLAKLIEEIKAVGYVPDTD-SI 651

Query: 463 HAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKRE 522
           H V ++VK QLL  HSEKLAIAFGLI+   GT I++ KNLRVC DCH ATK IS +  RE
Sbjct: 652 HDVEDDVKAQLLNTHSEKLAIAFGLIRTAPGTTIQIKKNLRVCNDCHNATKLISLVTGRE 711

Query: 523 IIVRDTTRFHHFKDGTCSCGDYW 545
           II+RD  RFHHFKDG CSCGDYW
Sbjct: 712 IIMRDIQRFHHFKDGKCSCGDYW 734



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 83/308 (26%), Positives = 145/308 (47%), Gaps = 54/308 (17%)

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK-----NSVSW------------ 104
           F R+P++D  +WN +++G+ +      A ++ + M E+     +S++             
Sbjct: 117 FDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSITLVSVLPACANARA 176

Query: 105 -----------------------SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISG 141
                                  +A++  Y +CG +  A  +F   P K+ V+W AMI  
Sbjct: 177 LAACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMID- 235

Query: 142 YMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKS 201
               GY +N  + + L L   M+  G+     S+ + L  C  L  L  G +VH+L+ + 
Sbjct: 236 ----GYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMRVHELLVRI 291

Query: 202 PLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLF 261
            L  + + +  LI+MY KC  ++ A  +F E+ R+  V+WNAMI G AQ+G  E A+RLF
Sbjct: 292 GLDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLF 351

Query: 262 DKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDH----YTCMVD 317
            +M+ E +KPDS T V+++ A     L D+        ++ Y I    D      T ++D
Sbjct: 352 TRMQLENVKPDSFTLVSVIPA-----LADISDPLQARWIHGYSIRLHLDQDVYVLTALID 406

Query: 318 LLGRAGKL 325
           +  + G++
Sbjct: 407 MYAKCGRV 414



 Score =  111 bits (278), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 64/203 (31%), Positives = 113/203 (55%), Gaps = 4/203 (1%)

Query: 98  EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGL 157
           +  +++ +A+ + Y +C +   A  +F   PV+  VAW A+++GY + G    +      
Sbjct: 91  DSEALAATALANMYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAME---- 146

Query: 158 KLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMY 217
            ++RM    G RP++ +L SVL  C++  +L   ++ H    +S L +     T ++  Y
Sbjct: 147 MVVRMQEEEGERPDSITLVSVLPACANARALAACREAHAFAIRSGLEELVNVATAILDAY 206

Query: 218 CKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFV 277
           CKCGD+  A  +F  +  K+ V+WNAMI GYAQ+G   +AL LF++M +EG+    ++ +
Sbjct: 207 CKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVL 266

Query: 278 ALLLACNHAGLVDLGIQYFDSMV 300
           A L AC   G +D G++  + +V
Sbjct: 267 AALQACGELGCLDEGMRVHELLV 289



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/119 (33%), Positives = 66/119 (55%), Gaps = 1/119 (0%)

Query: 163 MIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGD 222
           M   G  P   + +S+L  C+    L  G+ VH  +    +  +  A T L +MY KC  
Sbjct: 50  MSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALANMYAKCRR 109

Query: 223 LEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMK-DEGMKPDSITFVALL 280
             DA ++F  +  +D V WNA+++GYA++G    A+ +  +M+ +EG +PDSIT V++L
Sbjct: 110 PADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSITLVSVL 168


>gi|259490042|ref|NP_001159140.1| hypothetical protein [Zea mays]
 gi|223942207|gb|ACN25187.1| unknown [Zea mays]
 gi|414585730|tpg|DAA36301.1| TPA: hypothetical protein ZEAMMB73_369042 [Zea mays]
          Length = 885

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 213/550 (38%), Positives = 327/550 (59%), Gaps = 26/550 (4%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCIL---LNSDDVVAAFD 60
           +  V W  +++GF  Q G   ++ ELF+++    +      L+ ++    +  D+     
Sbjct: 354 RNNVAWTVLISGFL-QYGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQ 412

Query: 61  F----FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQ 116
                 +   I+     N++IS + +  N+  A  +F  M EK+ VSW++MI+ Y + G 
Sbjct: 413 LHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEKDIVSWTSMITAYSQVGN 472

Query: 117 LDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLG-IRPNASSL 175
           + KA E F     K+V+ W AM+  Y++ G       EDGL++ ++M+    +RP+  + 
Sbjct: 473 VAKAREFFDGMSEKNVITWNAMLGAYIQHGA-----EEDGLRMYKVMLSEEYVRPDWVTY 527

Query: 176 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR 235
            ++  GC+ L + +LG Q+     K  L  DT+    +I+MY KCG + +A K+F  +  
Sbjct: 528 VTLFKGCADLGANKLGDQIIGRTVKVGLIIDTSVANAVITMYSKCGRILEARKVFDFLNV 587

Query: 236 KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQY 295
           KD+V+WNAMI+GY+QHG G++A+ +FD +   G KPD I++VA+L  C+H+GLV  G  Y
Sbjct: 588 KDIVSWNAMITGYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGKFY 647

Query: 296 FDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHK 355
           FD M   + I+   +H++CMVDLLGRAG L EA DLI  MP KP   ++G LLSAC++H 
Sbjct: 648 FDMMKRAHNISPGLEHFSCMVDLLGRAGHLTEAKDLIDDMPMKPTAEVWGALLSACKIHG 707

Query: 356 RLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSW 415
             +LAE AA ++F L+  + +G Y+ +A IYA   K DD A+IR  M++  + K PGYSW
Sbjct: 708 NNELAELAAKHVFELDSPD-SGSYMLMAKIYADAGKSDDSAQIRKLMRDKGIKKNPGYSW 766

Query: 416 IEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLL 475
           +EV   VH F++ D  HP++++I +KL EL +++   GYV           +  + +  +
Sbjct: 767 MEVDNKVHVFKADDVSHPQVLAIRKKLDELMEKIARLGYVRT---------DSTRSE--I 815

Query: 476 FHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFK 535
            HSEKLA+AFGL+ +P   PI + KNLR+CGDCH   K IS +  RE ++RD  RFHHF 
Sbjct: 816 HHSEKLAVAFGLMTLPTWMPIHIMKNLRICGDCHTVIKLISTVTGREFVIRDAVRFHHFN 875

Query: 536 DGTCSCGDYW 545
            G+CSCGDYW
Sbjct: 876 GGSCSCGDYW 885



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 99/359 (27%), Positives = 165/359 (45%), Gaps = 48/359 (13%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK- 68
           NS+LAG+ K  G +  A ELFD +P+ DVVS+N+M+S  L  S  V  A D    +  K 
Sbjct: 228 NSMLAGYVKTYG-VDHALELFDSMPERDVVSWNMMVSA-LSQSGRVREALDMVVDMQSKG 285

Query: 69  ---DTASWNTMISGFVQKKNMAKARDLFLA----MPEKNSVSWSAMISGYIECGQLDKAV 121
              D+ ++ + ++   +  ++   + L       +P  +    SA++  Y + G   +A 
Sbjct: 286 VRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPHIDPYVASALVELYAKSGCFKEAK 345

Query: 122 ELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLG 181
            +F     ++ VAWT +ISG++++G    S     ++L   M    +  +  +L++++ G
Sbjct: 346 GVFNSLHDRNNVAWTVLISGFLQYGCFTES-----VELFNQMRAELMTLDQFALATLISG 400

Query: 182 CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKD---- 237
           C     L LG+Q+H L  KS   +       LISMY KC +L+ A  +F  +  KD    
Sbjct: 401 CCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEKDIVSW 460

Query: 238 ---------------------------VVTWNAMISGYAQHGKGEKALRLFDKM-KDEGM 269
                                      V+TWNAM+  Y QHG  E  LR++  M  +E +
Sbjct: 461 TSMITAYSQVGNVAKAREFFDGMSEKNVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYV 520

Query: 270 KPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEA 328
           +PD +T+V L   C   G   LG Q     V   G+         ++ +  + G+++EA
Sbjct: 521 RPDWVTYVTLFKGCADLGANKLGDQIIGRTVK-VGLIIDTSVANAVITMYSKCGRILEA 578



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 83/336 (24%), Positives = 147/336 (43%), Gaps = 80/336 (23%)

Query: 21  GKLKDAQELF-DKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISG 79
           G L DA+ L    I  P+V+++N+ML+        +  A + F R+P +D ASWNT++SG
Sbjct: 73  GALSDARRLLLMDIAHPNVITHNVMLNG-YAKLGRLSDAVELFGRMPARDVASWNTLMSG 131

Query: 80  FVQKKNMAKARDLFLAMPEKNSVSW----------------------------------- 104
           + Q +    + + FL+M  ++  SW                                   
Sbjct: 132 YFQSRQYLVSLETFLSM-HRSGDSWPNAFTLACAMKSCGALGWHSLALQLLAMVQKFDSQ 190

Query: 105 ------SAMISGYIECGQLD-------------------------------KAVELFKVA 127
                 +A++  ++ CG +D                                A+ELF   
Sbjct: 191 DDSEVAAALVDMFVRCGAVDLASRLFVRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSM 250

Query: 128 PVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSS 187
           P + VV+W  M+S   + G V      + L ++  M   G+R ++++ +S L  C+ LSS
Sbjct: 251 PERDVVSWNMMVSALSQSGRV-----REALDMVVDMQSKGVRLDSTTYTSSLTACARLSS 305

Query: 188 LQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISG 247
           L+ GKQ+H  V ++    D    + L+ +Y K G  ++A  +F  +  ++ V W  +ISG
Sbjct: 306 LRWGKQLHAQVIRNLPHIDPYVASALVELYAKSGCFKEAKGVFNSLHDRNNVAWTVLISG 365

Query: 248 YAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC 283
           + Q+G   +++ LF++M+ E M  D      L+  C
Sbjct: 366 FLQYGCFTESVELFNQMRAELMTLDQFALATLISGC 401



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 71/287 (24%), Positives = 127/287 (44%), Gaps = 37/287 (12%)

Query: 74  NTMISGFVQKKNMAKARDLFLA-MPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSV 132
           NT++  ++    ++ AR L L  +   N ++ + M++GY + G+L  AVELF   P + V
Sbjct: 63  NTLLHAYLSCGALSDARRLLLMDIAHPNVITHNVMLNGYAKLGRLSDAVELFGRMPARDV 122

Query: 133 VAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGK 192
            +W  ++SGY +       +       L M       PNA +L+  +  C  L    L  
Sbjct: 123 ASWNTLMSGYFQ----SRQYLVSLETFLSMHRSGDSWPNAFTLACAMKSCGALGWHSLAL 178

Query: 193 QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ------------------ 234
           Q+  +V K     D+     L+ M+ +CG ++ A +LF+ I+                  
Sbjct: 179 QLLAMVQKFDSQDDSEVAAALVDMFVRCGAVDLASRLFVRIKEPTMFCRNSMLAGYVKTY 238

Query: 235 -------------RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLL 281
                         +DVV+WN M+S  +Q G+  +AL +   M+ +G++ DS T+ + L 
Sbjct: 239 GVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLT 298

Query: 282 ACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEA 328
           AC     +  G Q    ++ +      P   + +V+L  ++G   EA
Sbjct: 299 ACARLSSLRWGKQLHAQVIRNLP-HIDPYVASALVELYAKSGCFKEA 344



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 87/364 (23%), Positives = 145/364 (39%), Gaps = 92/364 (25%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSC------------- 47
           MN K  V+W S++  ++ Q G +  A+E FD + + +V+++N ML               
Sbjct: 452 MNEKDIVSWTSMITAYS-QVGNVAKAREFFDGMSEKNVITWNAMLGAYIQHGAEEDGLRM 510

Query: 48  --ILLNSD----DVVAAFDFFQRLP--------------------IKDTASWNTMISGFV 81
             ++L+ +    D V     F+                       I DT+  N +I+ + 
Sbjct: 511 YKVMLSEEYVRPDWVTYVTLFKGCADLGANKLGDQIIGRTVKVGLIIDTSVANAVITMYS 570

Query: 82  QKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISG 141
           +   + +AR +F  +  K+ VSW+AMI+GY + G   +A+E+F                 
Sbjct: 571 KCGRILEARKVFDFLNVKDIVSWNAMITGYSQHGMGKQAIEIF----------------- 613

Query: 142 YMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKS 201
                       +D LK        G +P+  S  +VL GCSH   +Q GK      F  
Sbjct: 614 ------------DDILK-------RGAKPDYISYVAVLSGCSHSGLVQEGK------FYF 648

Query: 202 PLCKDTTALTP-------LISMYCKCGDLEDACKLFLEIQRKDVV-TWNAMISGYAQHGK 253
            + K    ++P       ++ +  + G L +A  L  ++  K     W A++S    HG 
Sbjct: 649 DMMKRAHNISPGLEHFSCMVDLLGRAGHLTEAKDLIDDMPMKPTAEVWGALLSACKIHGN 708

Query: 254 GEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYT 313
            E A  L  K   E   PDS +++ +      AG  D   Q    ++ D GI   P +  
Sbjct: 709 NELA-ELAAKHVFELDSPDSGSYMLMAKIYADAGKSDDSAQ-IRKLMRDKGIKKNPGYSW 766

Query: 314 CMVD 317
             VD
Sbjct: 767 MEVD 770


>gi|297797743|ref|XP_002866756.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312591|gb|EFH43015.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 649

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 209/478 (43%), Positives = 298/478 (62%), Gaps = 7/478 (1%)

Query: 69  DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAP 128
           D  + N++I+ +    N   A  LF  +P+ ++VSW+++I GY + G++D A+ LF+   
Sbjct: 178 DVYAVNSLINSYAATGNFKLAHLLFDRIPKPDAVSWNSVIKGYAKAGKMDIALTLFRKMV 237

Query: 129 VKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSL 188
            K+ ++WT MISGY++ G       ++ L+L   M    + P+  SL++ L  C+ L +L
Sbjct: 238 EKNAISWTTMISGYVQAGM-----HKEALQLFHEMQNSDVEPDNVSLANALSACAQLGAL 292

Query: 189 QLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGY 248
           + GK +H  + K+ +  D+     LI MY KCGD+ +A ++F  IQRK V  W A+ISGY
Sbjct: 293 EQGKWIHSYLTKTRIRMDSVLGCVLIDMYAKCGDMGEALEVFKNIQRKSVQAWTALISGY 352

Query: 249 AQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK 308
           A HG G +A+  F +M+  G+KP+ ITF  +L AC++ GLV+ G   F +M  DY +   
Sbjct: 353 AYHGHGREAISKFMEMQKMGIKPNVITFTTVLTACSYTGLVEEGKLIFYNMERDYNLKPT 412

Query: 309 PDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLF 368
            +HY C+VDLL RAG L EA   I++MP KP   I+G LL ACR+HK ++L E     L 
Sbjct: 413 IEHYGCVVDLLSRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNIELGEEIGEILI 472

Query: 369 NLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSG 428
            ++P +  G YV  ANI+A  KKWD  A  R  MKE  V K+PG S I +    HEF +G
Sbjct: 473 AIDPYH-GGRYVHKANIHAMGKKWDKAAETRRLMKEQGVAKVPGCSTISLEGTTHEFLAG 531

Query: 429 DRVHPELVSIHEKLKELEKRMKLAGYVPD-LEFALHAVGEEVKEQLLLFHSEKLAIAFGL 487
           DR HPE+  I  K K + ++++  GYVP+  +  L  V ++ +E ++  HSEKLAI +GL
Sbjct: 532 DRSHPEIEKIQSKWKIMRRKLEENGYVPELEDMLLDLVDDDERETIVHQHSEKLAITYGL 591

Query: 488 IKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           IK   GT IR+ KNLRVC DCH+ TK IS I KR+I++RD TRFHHF+DG CSCGDYW
Sbjct: 592 IKTKPGTTIRIMKNLRVCKDCHKVTKLISKIYKRDIVMRDRTRFHHFRDGKCSCGDYW 649



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 62/234 (26%), Positives = 100/234 (42%), Gaps = 45/234 (19%)

Query: 192 KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLED----ACKLFLEIQRKDVVTWNAMISG 247
           KQ+H  + K+ L +D+ A+T  +S  C      D    A  +F    R D   WN MI G
Sbjct: 60  KQIHARMLKTGLIQDSYAITKFLSC-CISSTSSDFLPYAQIVFDGFDRPDTFLWNLMIRG 118

Query: 248 YAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN-----------HAGLVDLG---- 292
           ++   + E++L L+ +M       ++ TF +LL AC+           HA +  LG    
Sbjct: 119 FSCSDEPERSLLLYQRMLCCSAPHNAYTFPSLLKACSNLSALEETTQIHAQITKLGYEND 178

Query: 293 IQYFDSMVNDYGIAA-------------KPD--HYTCMVDLLGRAGKLVEAVDLIKKMPF 337
           +   +S++N Y                 KPD   +  ++    +AGK+  A+ L +KM  
Sbjct: 179 VYAVNSLINSYAATGNFKLAHLLFDRIPKPDAVSWNSVIKGYAKAGKMDIALTLFRKMVE 238

Query: 338 KPQPAIFGTLLSA---CRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAA 388
           K     + T++S      +HK   L  F  M   ++ P N     V LAN  +A
Sbjct: 239 K-NAISWTTMISGYVQAGMHKEA-LQLFHEMQNSDVEPDN-----VSLANALSA 285


>gi|302773622|ref|XP_002970228.1| hypothetical protein SELMODRAFT_93321 [Selaginella moellendorffii]
 gi|300161744|gb|EFJ28358.1| hypothetical protein SELMODRAFT_93321 [Selaginella moellendorffii]
          Length = 936

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 216/529 (40%), Positives = 314/529 (59%), Gaps = 15/529 (2%)

Query: 25  DAQELFDKIPQPDVVSYNIMLSCILL--NSDDVVAAFDFFQRLPIK-DTASWNTMISGFV 81
           DA+ +FD++  P+++S+N M+   +     DD +  F   Q+  I+ D  ++ T++ G  
Sbjct: 415 DARTVFDQLELPNLISWNSMIGIYVQCERHDDALQLFRTMQQQGIQPDRVNFMTIL-GAC 473

Query: 82  QKKNMAKARDLFLAMPEKNSVSWS-----AMISGYIECGQLDKAVELFKVAPVKSVVAWT 136
              +  + R L     E++ +  S     ++++ Y + G+LD A  + +    + + AW 
Sbjct: 474 TIGSHGRTRKLVHQCVEESGLGGSPLVQTSLVNMYAKAGELDVAEVILQEMDEQQITAWN 533

Query: 137 AMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQ 196
            +I+GY   G      + + L+  + +    I  +  +  SVL  C+  +SL  GK +H 
Sbjct: 534 VLINGYALHGR-----SREALEAYQKLQLEAIPVDKVTFISVLNACTSSTSLAEGKMIHS 588

Query: 197 LVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEK 256
              +  L  D      L +MY KCG +E+A ++F  +  +  V+WN M+  YAQHG+ E+
Sbjct: 589 NAVECGLDSDVIVKNALTNMYSKCGSMENARRIFDSMPIRSAVSWNGMLQAYAQHGESEE 648

Query: 257 ALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMV 316
            L+L  KM+ EG+K + ITFV++L +C+HAGL+  G QYF S+ +D GI  K +HY C+V
Sbjct: 649 VLKLIRKMEQEGVKLNGITFVSVLSSCSHAGLIAEGCQYFHSLGHDRGIEVKTEHYGCLV 708

Query: 317 DLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAA 376
           DLLGRAGKL EA   I KMP +P    + +LL ACRV K LD  + AA  L  L+P N++
Sbjct: 709 DLLGRAGKLQEAEKYISKMPLEPGIVTWASLLGACRVQKDLDRGKLAAGKLLELDPGNSS 768

Query: 377 GCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELV 436
              V L+NIY+    W + A++R +M    V K+PG S I+V   VHEFR  D  HP   
Sbjct: 769 ASVV-LSNIYSERGDWKNAAKLRRAMASRRVKKVPGISSIQVKNKVHEFRVRDTSHPRAA 827

Query: 437 SIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPI 496
            I++K++EL   M+ AGYVPD +  LH V EE KE LL +HSEKLAIAFGLI  P  + +
Sbjct: 828 EIYDKVEELCFAMREAGYVPDTKMVLHDVDEEQKESLLAYHSEKLAIAFGLISTPETSSL 887

Query: 497 RVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
            +FKNLRVC DCH ATK+IS I  REI+VRD  RFHHF+DG+CSC DYW
Sbjct: 888 HIFKNLRVCEDCHTATKFISKITGREIVVRDNHRFHHFRDGSCSCKDYW 936



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 89/355 (25%), Positives = 179/355 (50%), Gaps = 16/355 (4%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK- 68
           N+ L     + G L DA+++FD +P   V ++N M+S   + S+    AF  FQR+  + 
Sbjct: 198 NTALVNTYTKCGSLTDARKVFDGMPCRSVGTWNSMISAYSI-SERSGEAFFIFQRMQQEG 256

Query: 69  ---DTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISGYIECGQLDKAV 121
              D  ++ +++   V  + +   + +  ++ E     +    +A+I+ Y  C   + A 
Sbjct: 257 ERCDRVTFLSILDACVNPETLQHGKHVRESISETSFELDLFVGTALITMYARCRSPEDAA 316

Query: 122 ELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLG 181
           ++F      +++ W+A+I+ +   G+       + L+  RMM   GI PN  +  S+L G
Sbjct: 317 QVFGRMKQTNLITWSAIITAFADHGH-----CGEALRYFRMMQQEGILPNRVTFISLLNG 371

Query: 182 CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTW 241
            +  S L+   ++H L+ +  L   TT    L+++Y +C   +DA  +F +++  ++++W
Sbjct: 372 FTTPSGLEELSRIHLLITEHGLDDTTTMRNALVNVYGRCESPDDARTVFDQLELPNLISW 431

Query: 242 NAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN 301
           N+MI  Y Q  + + AL+LF  M+ +G++PD + F+ +L AC   G      +     V 
Sbjct: 432 NSMIGIYVQCERHDDALQLFRTMQQQGIQPDRVNFMTILGACT-IGSHGRTRKLVHQCVE 490

Query: 302 DYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKR 356
           + G+   P   T +V++  +AG+L  A  ++++M  + Q   +  L++   +H R
Sbjct: 491 ESGLGGSPLVQTSLVNMYAKAGELDVAEVILQEMD-EQQITAWNVLINGYALHGR 544



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 80/253 (31%), Positives = 125/253 (49%), Gaps = 8/253 (3%)

Query: 111 YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRP 170
           Y  CG L  AV  F     ++VV+W  MIS Y  +   +     + L L   M+  G+ P
Sbjct: 2   YSRCGSLGDAVAAFGKIRARNVVSWNVMISAYSSYKSFQ-----EALALFHAMLLEGVAP 56

Query: 171 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 230
           NA +L +VL  C     L+ G  VH L  +    ++T   T L++MY KCG L DA  +F
Sbjct: 57  NAITLVAVLNSCGSFRELRDGILVHALSLERGFFQNTLVATALLNMYGKCGTLLDAQSVF 116

Query: 231 LEIQRKDVVTWNAMISGYAQHGKGEK-ALRLFDKMKDEGMKPDSITFVALLLACNHAGLV 289
            E+  K+VVTWNAM+  Y+  G   K A+ LF +M  EG+K + ITF+ +L +      +
Sbjct: 117 EEMAEKNVVTWNAMLGVYSLQGCCWKLAVELFTRMLLEGVKANVITFLNVLNSVVDPDAL 176

Query: 290 DLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLS 349
             G ++  S V +   +      T +V+   + G L +A  +   MP +     + +++S
Sbjct: 177 RKG-KFIHSCVRESEHSLDVFVNTALVNTYTKCGSLTDARKVFDGMPCRS-VGTWNSMIS 234

Query: 350 ACRVHKRLDLAEF 362
           A  + +R   A F
Sbjct: 235 AYSISERSGEAFF 247



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 80/271 (29%), Positives = 135/271 (49%), Gaps = 13/271 (4%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTA-SWNTMISG 79
           G L DA   F KI   +VVS+N+M+S    +      A   F  + ++  A +  T+++ 
Sbjct: 6   GSLGDAVAAFGKIRARNVVSWNVMISA-YSSYKSFQEALALFHAMLLEGVAPNAITLVAV 64

Query: 80  FVQKKNMAKARDLFLAMPE-------KNSVSWSAMISGYIECGQLDKAVELFKVAPVKSV 132
                +  + RD  L           +N++  +A+++ Y +CG L  A  +F+    K+V
Sbjct: 65  LNSCGSFRELRDGILVHALSLERGFFQNTLVATALLNMYGKCGTLLDAQSVFEEMAEKNV 124

Query: 133 VAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGK 192
           V W AM+  Y   G     W +  ++L   M+  G++ N  +  +VL       +L+ GK
Sbjct: 125 VTWNAMLGVYSLQGCC---W-KLAVELFTRMLLEGVKANVITFLNVLNSVVDPDALRKGK 180

Query: 193 QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHG 252
            +H  V +S    D    T L++ Y KCG L DA K+F  +  + V TWN+MIS Y+   
Sbjct: 181 FIHSCVRESEHSLDVFVNTALVNTYTKCGSLTDARKVFDGMPCRSVGTWNSMISAYSISE 240

Query: 253 KGEKALRLFDKMKDEGMKPDSITFVALLLAC 283
           +  +A  +F +M+ EG + D +TF+++L AC
Sbjct: 241 RSGEAFFIFQRMQQEGERCDRVTFLSILDAC 271



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 41/123 (33%), Positives = 70/123 (56%), Gaps = 1/123 (0%)

Query: 216 MYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSIT 275
           MY +CG L DA   F +I+ ++VV+WN MIS Y+ +   ++AL LF  M  EG+ P++IT
Sbjct: 1   MYSRCGSLGDAVAAFGKIRARNVVSWNVMISAYSSYKSFQEALALFHAMLLEGVAPNAIT 60

Query: 276 FVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335
            VA+L +C     +  GI    ++  + G        T ++++ G+ G L++A  + ++M
Sbjct: 61  LVAVLNSCGSFRELRDGI-LVHALSLERGFFQNTLVATALLNMYGKCGTLLDAQSVFEEM 119

Query: 336 PFK 338
             K
Sbjct: 120 AEK 122


>gi|225454494|ref|XP_002276948.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
           mitochondrial-like [Vitis vinifera]
          Length = 913

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 210/506 (41%), Positives = 306/506 (60%), Gaps = 14/506 (2%)

Query: 48  ILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVS 103
           + + +  + +A   F  +  ++  +WN+++SG+  K     A  L   M ++    + V+
Sbjct: 414 MYVKNHSLTSAQAVFDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVT 473

Query: 104 WSAMISGYI--ECGQLDKAV--ELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKL 159
           W+ MISGY    CG+   AV  +   +    +VV+WTA+ISG  + G        D LK 
Sbjct: 474 WNGMISGYAMWGCGKEALAVLHQTKSLGLTPNVVSWTALISGSSQAGN-----NRDSLKF 528

Query: 160 LRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCK 219
              M   G+ PN++S++ +L  C+ LS LQ GK++H L  ++   +D    T LI MY K
Sbjct: 529 FAQMQQEGVMPNSASITCLLRACASLSLLQKGKEIHCLSIRNGFIEDVFVATALIDMYSK 588

Query: 220 CGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVAL 279
              L++A K+F  IQ K + +WN MI G+A  G G++A+ +F++M+  G+ PD+ITF AL
Sbjct: 589 SSSLKNAHKVFRRIQNKTLASWNCMIMGFAIFGLGKEAISVFNEMQKVGVGPDAITFTAL 648

Query: 280 LLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKP 339
           L AC ++GL+  G +YFDSM+ DY I  + +HY CMVDLLGRAG L EA DLI  MP KP
Sbjct: 649 LSACKNSGLIGEGWKYFDSMITDYRIVPRLEHYCCMVDLLGRAGYLDEAWDLIHTMPLKP 708

Query: 340 QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIR 399
              I+G LL +CR+HK L  AE AA NLF L P N+A  Y+ + N+Y+   +W+D+  +R
Sbjct: 709 DATIWGALLGSCRIHKNLKFAETAAKNLFKLEPNNSAN-YILMMNLYSIFNRWEDMDHLR 767

Query: 400 LSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLE 459
             M    V     +SWI++   VH F S ++ HP+   I+ +L +L   MK  GYVPD+ 
Sbjct: 768 ELMGAAGVRNRQVWSWIQINQRVHVFSSDEKPHPDAGKIYFELYQLVSEMKKLGYVPDVN 827

Query: 460 FALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIE 519
                + E  K+++LL H+EKLAI +GLIK+  G PIRV KN R+C DCH A KYIS ++
Sbjct: 828 CVYQNMDEVEKQKILLSHTEKLAITYGLIKMKAGEPIRVIKNTRICSDCHSAAKYISLVK 887

Query: 520 KREIIVRDTTRFHHFKDGTCSCGDYW 545
            RE+ +RD  RFHHF++G CSC D+W
Sbjct: 888 ARELFLRDGVRFHHFREGKCSCNDFW 913



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 89/295 (30%), Positives = 147/295 (49%), Gaps = 23/295 (7%)

Query: 69  DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELF---K 125
           D +  N +IS + +   +  AR +F +M  +N+ SW++MIS Y   G L+ A  LF   +
Sbjct: 268 DVSLCNPLISMYSKNGKLELARRVFDSMENRNTSSWNSMISSYAALGFLNDAWSLFYELE 327

Query: 126 VAPVK-SVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSH 184
            + +K  +V W  ++SG+   GY      E+ L +L+ M G G +PN+SS++SVL   S 
Sbjct: 328 SSDMKPDIVTWNCLLSGHFLHGY-----KEEVLNILQRMQGEGFKPNSSSMTSVLQAISE 382

Query: 185 LSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAM 244
           L  L +GK+ H  V ++    D    T LI MY K   L  A  +F  ++ +++  WN++
Sbjct: 383 LGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLTSAQAVFDNMKNRNIFAWNSL 442

Query: 245 ISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVAL-----LLACNHAGLVDLGIQYFDSM 299
           +SGY+  G  E ALRL ++M+ EG+KPD +T+  +     +  C    L  L        
Sbjct: 443 VSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYAMWGCGKEALAVL------HQ 496

Query: 300 VNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK---PQPAIFGTLLSAC 351
               G+      +T ++    +AG   +++    +M  +   P  A    LL AC
Sbjct: 497 TKSLGLTPNVVSWTALISGSSQAGNNRDSLKFFAQMQQEGVMPNSASITCLLRAC 551



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 55/175 (31%), Positives = 91/175 (52%), Gaps = 5/175 (2%)

Query: 106 AMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIG 165
           A+++ Y  C  L+KA ++F   P    + W   I        +++   + G++L R M  
Sbjct: 173 ALMNFYGRCWGLEKANQVFHEMPNPEALLWNEAI-----ILNLQSEKLQKGVELFRKMQF 227

Query: 166 LGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLED 225
             ++   +++  VL  C  + +L   KQ+H  VF+  L  D +   PLISMY K G LE 
Sbjct: 228 SFLKAETATIVRVLQACGKMGALNAAKQIHGYVFRFGLDSDVSLCNPLISMYSKNGKLEL 287

Query: 226 ACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 280
           A ++F  ++ ++  +WN+MIS YA  G    A  LF +++   MKPD +T+  LL
Sbjct: 288 ARRVFDSMENRNTSSWNSMISSYAALGFLNDAWSLFYELESSDMKPDIVTWNCLL 342



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 78/334 (23%), Positives = 134/334 (40%), Gaps = 84/334 (25%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQ 63
           +  + WNS +  F    G L    E+F ++    VV  + + S  L     V+   D + 
Sbjct: 95  RNYLKWNSFVEEFKSSAGSLHIVLEVFKELHGKGVVFDSEVYSVALKTCTRVM---DIWL 151

Query: 64  RLPIK----------DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE 113
            + I           D      +++ + +   + KA  +F  MP   ++ W+  I   ++
Sbjct: 152 GMEIHGCLIKRGFDLDVYLRCALMNFYGRCWGLEKANQVFHEMPNPEALLWNEAIILNLQ 211

Query: 114 CGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNAS 173
             +L K VELF+                 M+F +                    ++   +
Sbjct: 212 SEKLQKGVELFR----------------KMQFSF--------------------LKAETA 235

Query: 174 SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE--------- 224
           ++  VL  C  + +L   KQ+H  VF+  L  D +   PLISMY K G LE         
Sbjct: 236 TIVRVLQACGKMGALNAAKQIHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFDSM 295

Query: 225 ----------------------DACKLFLEIQ----RKDVVTWNAMISGYAQHGKGEKAL 258
                                 DA  LF E++    + D+VTWN ++SG+  HG  E+ L
Sbjct: 296 ENRNTSSWNSMISSYAALGFLNDAWSLFYELESSDMKPDIVTWNCLLSGHFLHGYKEEVL 355

Query: 259 RLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 292
            +  +M+ EG KP+S +  ++L A +  G +++G
Sbjct: 356 NILQRMQGEGFKPNSSSMTSVLQAISELGFLNMG 389



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/234 (23%), Positives = 102/234 (43%), Gaps = 15/234 (6%)

Query: 107 MISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDG-----LKLLR 161
           +IS Y+  G    A  +F V   ++ + W +         +VE   +  G     L++ +
Sbjct: 72  LISSYLGFGDFWSAAMVFYVGLPRNYLKWNS---------FVEEFKSSAGSLHIVLEVFK 122

Query: 162 MMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCG 221
            + G G+  ++   S  L  C+ +  + LG ++H  + K     D      L++ Y +C 
Sbjct: 123 ELHGKGVVFDSEVYSVALKTCTRVMDIWLGMEIHGCLIKRGFDLDVYLRCALMNFYGRCW 182

Query: 222 DLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLL 281
            LE A ++F E+   + + WN  I    Q  K +K + LF KM+   +K ++ T V +L 
Sbjct: 183 GLEKANQVFHEMPNPEALLWNEAIILNLQSEKLQKGVELFRKMQFSFLKAETATIVRVLQ 242

Query: 282 ACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335
           AC   G ++   Q     V  +G+ +       ++ +  + GKL  A  +   M
Sbjct: 243 ACGKMGALNAAKQ-IHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFDSM 295


>gi|225428334|ref|XP_002279974.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial [Vitis vinifera]
          Length = 623

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 212/526 (40%), Positives = 315/526 (59%), Gaps = 11/526 (2%)

Query: 23  LKDAQELFDKIPQPDVVSYNIMLSCIL--LNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           L++A++LFD++P+ +VVS+  M+S     LN   +      F+     +  ++++++   
Sbjct: 106 LEEAEDLFDEMPERNVVSWTTMISAYSNKLNDKALKCLILMFREGVRPNMFTYSSVLRAC 165

Query: 81  VQKKNMAKAR-DLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMI 139
               N+ +    +     E +    SA+I  Y +   LD A+ +F   P + +V W ++I
Sbjct: 166 DGLPNLRQLHCGIIKTGLESDVFVRSALIDVYSKWSDLDNALGVFDEMPTRDLVVWNSII 225

Query: 140 SGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVF 199
            G+      +NS   + L L + M   G   + ++L+SVL  C+ L+ L+LG+QVH  V 
Sbjct: 226 GGF-----AQNSDGNEALNLFKRMKRAGFLADQATLTSVLRACTGLALLELGRQVHVHVL 280

Query: 200 KSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALR 259
           K    +D      LI MYCKCG LEDA   F  +  KDV++W+ M++G AQ+G   +AL 
Sbjct: 281 K--FDQDLILNNALIDMYCKCGSLEDANSAFSRMVEKDVISWSTMVAGLAQNGYSRQALE 338

Query: 260 LFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLL 319
           LF+ MK+ G +P+ IT + +L AC+HAGLV+ G  YF SM   +G+    +HY C++DLL
Sbjct: 339 LFESMKESGSRPNYITVLGVLFACSHAGLVEKGWYYFRSMKKLFGVDPGREHYGCLIDLL 398

Query: 320 GRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCY 379
           GRAG+L EAV LI +M  +P    + TLL ACRVH+ +DLA +AA  +  L P +A G Y
Sbjct: 399 GRAGRLDEAVKLIHEMECEPDSVTWRTLLGACRVHRNVDLAIYAAKKIIELEPEDA-GTY 457

Query: 380 VQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIH 439
           + L+NIYA  ++W+DVA +R +M    + K PG SWIEV   +H F  GD  HP++  I 
Sbjct: 458 ILLSNIYANTQRWEDVAEVRKTMTNRGIRKTPGCSWIEVDKQIHVFILGDTSHPKIEEIV 517

Query: 440 EKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVF 499
           ++L +L +R+   GYVPD  F L  +  E KE  L +HSEKLAI FGL+ +     +R+ 
Sbjct: 518 QRLNDLIERVMGVGYVPDTNFVLQDLEGEQKEDSLRYHSEKLAIMFGLMNLSREKTVRIR 577

Query: 500 KNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           KNLR+CGDCH   K +S +E R I++RD  R+HHF+DG CSCGDYW
Sbjct: 578 KNLRICGDCHVFAKVVSRMEHRSIVIRDPIRYHHFQDGVCSCGDYW 623



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 108/222 (48%), Gaps = 29/222 (13%)

Query: 128 PVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGL---GIRPNASSLSSVLLGCSH 184
           P++ V   + +++ +  F +    W  D  + +R M  +   G+  +A + S ++  CS 
Sbjct: 13  PLRYVADPSPLVNEFANFCH---QW--DLHRAMRAMDAMERHGVFADAITYSELIKCCSA 67

Query: 185 LSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAM 244
             ++Q GK+VH+ +F          +  L++MY K   LE+A  LF E+  ++VV+W  M
Sbjct: 68  RGAVQEGKRVHEHIFCKGYEPKMFVVNTLLNMYVKFNLLEEAEDLFDEMPERNVVSWTTM 127

Query: 245 ISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN--------HAGLVDLGIQYF 296
           IS Y+     +KAL+    M  EG++P+  T+ ++L AC+        H G++  G++  
Sbjct: 128 ISAYSNK-LNDKALKCLILMFREGVRPNMFTYSSVLRACDGLPNLRQLHCGIIKTGLES- 185

Query: 297 DSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 338
           D  V            + ++D+  +   L  A+ +  +MP +
Sbjct: 186 DVFVR-----------SALIDVYSKWSDLDNALGVFDEMPTR 216



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 68/295 (23%), Positives = 118/295 (40%), Gaps = 63/295 (21%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCIL----------L 50
           M  +  V WNS++ GFA Q     +A  LF ++ +   ++    L+ +L          L
Sbjct: 213 MPTRDLVVWNSIIGGFA-QNSDGNEALNLFKRMKRAGFLADQATLTSVLRACTGLALLEL 271

Query: 51  NSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISG 110
                V    F Q L +      N +I  + +  ++  A   F  M EK+ +SWS M++G
Sbjct: 272 GRQVHVHVLKFDQDLILN-----NALIDMYCKCGSLEDANSAFSRMVEKDVISWSTMVAG 326

Query: 111 YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRP 170
             + G   +A+ELF+                                     M   G RP
Sbjct: 327 LAQNGYSRQALELFES------------------------------------MKESGSRP 350

Query: 171 NASSLSSVLLGCSHLSSLQLG----KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 226
           N  ++  VL  CSH   ++ G    + + +L    P  +    L  L+    + G L++A
Sbjct: 351 NYITVLGVLFACSHAGLVEKGWYYFRSMKKLFGVDPGREHYGCLIDLLG---RAGRLDEA 407

Query: 227 CKLFLEIQ-RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKP-DSITFVAL 279
            KL  E++   D VTW  ++     H   + A+    K+ +  ++P D+ T++ L
Sbjct: 408 VKLIHEMECEPDSVTWRTLLGACRVHRNVDLAIYAAKKIIE--LEPEDAGTYILL 460


>gi|449459160|ref|XP_004147314.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 695

 Score =  407 bits (1045), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 214/492 (43%), Positives = 295/492 (59%), Gaps = 15/492 (3%)

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM------PEKNSVSWSAMISGYIEC 114
            F  L  K+  SWN MISG+ +     K   L   M      P++  V+ S +I+ Y +C
Sbjct: 212 LFDCLTKKNLVSWNLMISGYAKNGQPEKCIGLLHQMRLSGHMPDQ--VTMSTIIAAYCQC 269

Query: 115 GQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASS 174
           G++D+A  +F     K +V WTAM+ GY K     N   ED L L   M+   I P++ +
Sbjct: 270 GRVDEARRVFSEFKEKDIVCWTAMMVGYAK-----NGREEDALLLFNEMLLEHIEPDSYT 324

Query: 175 LSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ 234
           LSSV+  C+ L+SL  G+ VH     + L  +    + LI MY KCG ++DA  +F  + 
Sbjct: 325 LSSVVSSCAKLASLHHGQAVHGKSILAGLNNNLLVSSALIDMYSKCGFIDDARSVFNLMP 384

Query: 235 RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ 294
            ++VV+WNAMI G AQ+G  + AL LF+ M  +  KPD++TF+ +L AC H   ++ G +
Sbjct: 385 TRNVVSWNAMIVGCAQNGHDKDALELFENMLQQKFKPDNVTFIGILSACLHCNWIEQGQE 444

Query: 295 YFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVH 354
           YFDS+ N +G+    DHY CMV+LLGR G++ +AV LIK M   P   I+ TLLS C   
Sbjct: 445 YFDSITNQHGMTPTLDHYACMVNLLGRTGRIEQAVALIKNMAHDPDFLIWSTLLSICSTK 504

Query: 355 KRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYS 414
             +  AE AA +LF L+P  A   Y+ L+N+YA+M +W DVA +R  MK  NV K  G+S
Sbjct: 505 GDIVNAEVAARHLFELDPTIAVP-YIMLSNMYASMGRWKDVASVRNLMKSKNVKKFAGFS 563

Query: 415 WIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLL 474
           WIE+   VH F S DR HPE   I+EKL  L  +++  G+ P+    LH VGE+ K + +
Sbjct: 564 WIEIDNEVHRFTSEDRTHPESEDIYEKLNMLIGKLQEEGFTPNTNLVLHDVGEDEKFKSI 623

Query: 475 LFHSEKLAIAFGLIKVPLG-TPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHH 533
            FHSEKLA+AFGLIK P G +PIR+ KN+R+C DCH   K+ S I  R+II+RD+ RFHH
Sbjct: 624 CFHSEKLALAFGLIKKPNGISPIRIIKNIRICNDCHEFMKFASRIIGRQIILRDSNRFHH 683

Query: 534 FKDGTCSCGDYW 545
           F  G CSC D W
Sbjct: 684 FSTGKCSCNDNW 695



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 99/375 (26%), Positives = 169/375 (45%), Gaps = 96/375 (25%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNS--DDVVAAFDFFQRLPI 67
           N +L  +AK  GKL+DAQ LFDK+ + D+ S+N +LS    +    ++ A FD   R+P 
Sbjct: 62  NQLLHLYAK-FGKLRDAQNLFDKMLKRDIFSWNALLSAYAKSGSIQNLKATFD---RMPF 117

Query: 68  KDTASWNTMISGFVQKKNMAKARDLFLAMPEK---------------------------- 99
           +D+ S+NT I+GF       ++ +LF  M  +                            
Sbjct: 118 RDSVSYNTTIAGFSGNSCPQESLELFKRMQREGFEPTEYTIVSILNASAQLSDLRYGKQI 177

Query: 100 -----------NSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYV 148
                      N   W+A+   Y +CG++++A  LF     K++V+W  MISGY K G  
Sbjct: 178 HGSIIVRNFLGNVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKNGQP 237

Query: 149 ENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTT 208
           E              IGL                           +HQ+     +  D  
Sbjct: 238 EKC------------IGL---------------------------LHQMRLSGHM-PDQV 257

Query: 209 ALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEG 268
            ++ +I+ YC+CG +++A ++F E + KD+V W AM+ GYA++G+ E AL LF++M  E 
Sbjct: 258 TMSTIIAAYCQCGRVDEARRVFSEFKEKDIVCWTAMMVGYAKNGREEDALLLFNEMLLEH 317

Query: 269 MKPDSITFVALLLACN-----HAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAG 323
           ++PDS T  +++ +C      H G    G      + N+  ++      + ++D+  + G
Sbjct: 318 IEPDSYTLSSVVSSCAKLASLHHGQAVHGKSILAGLNNNLLVS------SALIDMYSKCG 371

Query: 324 KLVEAVDLIKKMPFK 338
            + +A  +   MP +
Sbjct: 372 FIDDARSVFNLMPTR 386



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 78/286 (27%), Positives = 141/286 (49%), Gaps = 13/286 (4%)

Query: 69  DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAP 128
           D+   N ++  + +   +  A++LF  M +++  SW+A++S Y + G +      F   P
Sbjct: 57  DSFLHNQLLHLYAKFGKLRDAQNLFDKMLKRDIFSWNALLSAYAKSGSIQNLKATFDRMP 116

Query: 129 VKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSL 188
            +  V++   I+G+       NS  ++ L+L + M   G  P   ++ S+L   + LS L
Sbjct: 117 FRDSVSYNTTIAGFSG-----NSCPQESLELFKRMQREGFEPTEYTIVSILNASAQLSDL 171

Query: 189 QLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGY 248
           + GKQ+H  +       +      L  MY KCG++E A  LF  + +K++V+WN MISGY
Sbjct: 172 RYGKQIHGSIIVRNFLGNVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGY 231

Query: 249 AQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK 308
           A++G+ EK + L  +M+  G  PD +T   ++ A    G VD   + F S   +  I   
Sbjct: 232 AKNGQPEKCIGLLHQMRLSGHMPDQVTMSTIIAAYCQCGRVDEARRVF-SEFKEKDIVC- 289

Query: 309 PDHYTCMVDLLGRAGKLVEAVDLIKKM---PFKPQPAIFGTLLSAC 351
              +T M+    + G+  +A+ L  +M     +P      +++S+C
Sbjct: 290 ---WTAMMVGYAKNGREEDALLLFNEMLLEHIEPDSYTLSSVVSSC 332



 Score = 65.1 bits (157), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 60/292 (20%), Positives = 121/292 (41%), Gaps = 60/292 (20%)

Query: 4   KTTVNWNSVLAGFAK----------------------------------QRGKLKDAQEL 29
           K  V+WN +++G+AK                                  Q G++ +A+ +
Sbjct: 219 KNLVSWNLMISGYAKNGQPEKCIGLLHQMRLSGHMPDQVTMSTIIAAYCQCGRVDEARRV 278

Query: 30  FDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK---DTASWNTMISGFVQKKNM 86
           F +  + D+V +  M+     N  +  A   F + L      D+ + ++++S   +  ++
Sbjct: 279 FSEFKEKDIVCWTAMMVGYAKNGREEDALLLFNEMLLEHIEPDSYTLSSVVSSCAKLASL 338

Query: 87  AKARDL----FLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGY 142
              + +     LA    N +  SA+I  Y +CG +D A  +F + P ++VV+W AMI   
Sbjct: 339 HHGQAVHGKSILAGLNNNLLVSSALIDMYSKCGFIDDARSVFNLMPTRNVVSWNAMI--- 395

Query: 143 MKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSP 202
              G  +N   +D L+L   M+    +P+  +   +L  C H + ++ G++    +    
Sbjct: 396 --VGCAQNGHDKDALELFENMLQQKFKPDNVTFIGILSACLHCNWIEQGQEYFDSI---- 449

Query: 203 LCKDTTALTPLISMYC-------KCGDLEDACKLFLEIQRK-DVVTWNAMIS 246
              +   +TP +  Y        + G +E A  L   +    D + W+ ++S
Sbjct: 450 --TNQHGMTPTLDHYACMVNLLGRTGRIEQAVALIKNMAHDPDFLIWSTLLS 499


>gi|414585731|tpg|DAA36302.1| TPA: hypothetical protein ZEAMMB73_369042 [Zea mays]
          Length = 865

 Score =  407 bits (1045), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 213/553 (38%), Positives = 326/553 (58%), Gaps = 32/553 (5%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDF-- 61
           +  V W  +++GF  Q G   ++ ELF+++    +      L+ ++       +  D   
Sbjct: 334 RNNVAWTVLISGFL-QYGCFTESVELFNQMRAELMTLDQFALATLI---SGCCSRMDLCL 389

Query: 62  --------FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE 113
                    +   I+     N++IS + +  N+  A  +F  M EK+ VSW++MI+ Y +
Sbjct: 390 GRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEKDIVSWTSMITAYSQ 449

Query: 114 CGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLG-IRPNA 172
            G + KA E F     K+V+ W AM+  Y++ G       EDGL++ ++M+    +RP+ 
Sbjct: 450 VGNVAKAREFFDGMSEKNVITWNAMLGAYIQHGA-----EEDGLRMYKVMLSEEYVRPDW 504

Query: 173 SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLE 232
            +  ++  GC+ L + +LG Q+     K  L  DT+    +I+MY KCG + +A K+F  
Sbjct: 505 VTYVTLFKGCADLGANKLGDQIIGRTVKVGLIIDTSVANAVITMYSKCGRILEARKVFDF 564

Query: 233 IQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 292
           +  KD+V+WNAMI+GY+QHG G++A+ +FD +   G KPD I++VA+L  C+H+GLV  G
Sbjct: 565 LNVKDIVSWNAMITGYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGLVQEG 624

Query: 293 IQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACR 352
             YFD M   + I+   +H++CMVDLLGRAG L EA DLI  MP KP   ++G LLSAC+
Sbjct: 625 KFYFDMMKRAHNISPGLEHFSCMVDLLGRAGHLTEAKDLIDDMPMKPTAEVWGALLSACK 684

Query: 353 VHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPG 412
           +H   +LAE AA ++F L+  + +G Y+ +A IYA   K DD A+IR  M++  + K PG
Sbjct: 685 IHGNNELAELAAKHVFELDSPD-SGSYMLMAKIYADAGKSDDSAQIRKLMRDKGIKKNPG 743

Query: 413 YSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQ 472
           YSW+EV   VH F++ D  HP++++I +KL EL +++   GYV           +  + +
Sbjct: 744 YSWMEVDNKVHVFKADDVSHPQVLAIRKKLDELMEKIARLGYVRT---------DSTRSE 794

Query: 473 LLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFH 532
             + HSEKLA+AFGL+ +P   PI + KNLR+CGDCH   K IS +  RE ++RD  RFH
Sbjct: 795 --IHHSEKLAVAFGLMTLPTWMPIHIMKNLRICGDCHTVIKLISTVTGREFVIRDAVRFH 852

Query: 533 HFKDGTCSCGDYW 545
           HF  G+CSCGDYW
Sbjct: 853 HFNGGSCSCGDYW 865



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 99/359 (27%), Positives = 165/359 (45%), Gaps = 48/359 (13%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK- 68
           NS+LAG+ K  G +  A ELFD +P+ DVVS+N+M+S  L  S  V  A D    +  K 
Sbjct: 208 NSMLAGYVKTYG-VDHALELFDSMPERDVVSWNMMVSA-LSQSGRVREALDMVVDMQSKG 265

Query: 69  ---DTASWNTMISGFVQKKNMAKARDLFLA----MPEKNSVSWSAMISGYIECGQLDKAV 121
              D+ ++ + ++   +  ++   + L       +P  +    SA++  Y + G   +A 
Sbjct: 266 VRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPHIDPYVASALVELYAKSGCFKEAK 325

Query: 122 ELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLG 181
            +F     ++ VAWT +ISG++++G    S     ++L   M    +  +  +L++++ G
Sbjct: 326 GVFNSLHDRNNVAWTVLISGFLQYGCFTES-----VELFNQMRAELMTLDQFALATLISG 380

Query: 182 CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKD---- 237
           C     L LG+Q+H L  KS   +       LISMY KC +L+ A  +F  +  KD    
Sbjct: 381 CCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEKDIVSW 440

Query: 238 ---------------------------VVTWNAMISGYAQHGKGEKALRLFDKM-KDEGM 269
                                      V+TWNAM+  Y QHG  E  LR++  M  +E +
Sbjct: 441 TSMITAYSQVGNVAKAREFFDGMSEKNVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYV 500

Query: 270 KPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEA 328
           +PD +T+V L   C   G   LG Q     V   G+         ++ +  + G+++EA
Sbjct: 501 RPDWVTYVTLFKGCADLGANKLGDQIIGRTVK-VGLIIDTSVANAVITMYSKCGRILEA 558



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 83/336 (24%), Positives = 147/336 (43%), Gaps = 80/336 (23%)

Query: 21  GKLKDAQELF-DKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISG 79
           G L DA+ L    I  P+V+++N+ML+        +  A + F R+P +D ASWNT++SG
Sbjct: 53  GALSDARRLLLMDIAHPNVITHNVMLNG-YAKLGRLSDAVELFGRMPARDVASWNTLMSG 111

Query: 80  FVQKKNMAKARDLFLAMPEKNSVSW----------------------------------- 104
           + Q +    + + FL+M  ++  SW                                   
Sbjct: 112 YFQSRQYLVSLETFLSM-HRSGDSWPNAFTLACAMKSCGALGWHSLALQLLAMVQKFDSQ 170

Query: 105 ------SAMISGYIECGQLD-------------------------------KAVELFKVA 127
                 +A++  ++ CG +D                                A+ELF   
Sbjct: 171 DDSEVAAALVDMFVRCGAVDLASRLFVRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSM 230

Query: 128 PVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSS 187
           P + VV+W  M+S   + G V      + L ++  M   G+R ++++ +S L  C+ LSS
Sbjct: 231 PERDVVSWNMMVSALSQSGRV-----REALDMVVDMQSKGVRLDSTTYTSSLTACARLSS 285

Query: 188 LQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISG 247
           L+ GKQ+H  V ++    D    + L+ +Y K G  ++A  +F  +  ++ V W  +ISG
Sbjct: 286 LRWGKQLHAQVIRNLPHIDPYVASALVELYAKSGCFKEAKGVFNSLHDRNNVAWTVLISG 345

Query: 248 YAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC 283
           + Q+G   +++ LF++M+ E M  D      L+  C
Sbjct: 346 FLQYGCFTESVELFNQMRAELMTLDQFALATLISGC 381



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 71/287 (24%), Positives = 127/287 (44%), Gaps = 37/287 (12%)

Query: 74  NTMISGFVQKKNMAKARDLFLA-MPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSV 132
           NT++  ++    ++ AR L L  +   N ++ + M++GY + G+L  AVELF   P + V
Sbjct: 43  NTLLHAYLSCGALSDARRLLLMDIAHPNVITHNVMLNGYAKLGRLSDAVELFGRMPARDV 102

Query: 133 VAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGK 192
            +W  ++SGY +       +       L M       PNA +L+  +  C  L    L  
Sbjct: 103 ASWNTLMSGYFQ----SRQYLVSLETFLSMHRSGDSWPNAFTLACAMKSCGALGWHSLAL 158

Query: 193 QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ------------------ 234
           Q+  +V K     D+     L+ M+ +CG ++ A +LF+ I+                  
Sbjct: 159 QLLAMVQKFDSQDDSEVAAALVDMFVRCGAVDLASRLFVRIKEPTMFCRNSMLAGYVKTY 218

Query: 235 -------------RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLL 281
                         +DVV+WN M+S  +Q G+  +AL +   M+ +G++ DS T+ + L 
Sbjct: 219 GVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLT 278

Query: 282 ACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEA 328
           AC     +  G Q    ++ +      P   + +V+L  ++G   EA
Sbjct: 279 ACARLSSLRWGKQLHAQVIRNLP-HIDPYVASALVELYAKSGCFKEA 324



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 87/364 (23%), Positives = 145/364 (39%), Gaps = 92/364 (25%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSC------------- 47
           MN K  V+W S++  ++ Q G +  A+E FD + + +V+++N ML               
Sbjct: 432 MNEKDIVSWTSMITAYS-QVGNVAKAREFFDGMSEKNVITWNAMLGAYIQHGAEEDGLRM 490

Query: 48  --ILLNSD----DVVAAFDFFQRLP--------------------IKDTASWNTMISGFV 81
             ++L+ +    D V     F+                       I DT+  N +I+ + 
Sbjct: 491 YKVMLSEEYVRPDWVTYVTLFKGCADLGANKLGDQIIGRTVKVGLIIDTSVANAVITMYS 550

Query: 82  QKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISG 141
           +   + +AR +F  +  K+ VSW+AMI+GY + G   +A+E+F                 
Sbjct: 551 KCGRILEARKVFDFLNVKDIVSWNAMITGYSQHGMGKQAIEIF----------------- 593

Query: 142 YMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKS 201
                       +D LK        G +P+  S  +VL GCSH   +Q GK      F  
Sbjct: 594 ------------DDILK-------RGAKPDYISYVAVLSGCSHSGLVQEGK------FYF 628

Query: 202 PLCKDTTALTP-------LISMYCKCGDLEDACKLFLEIQRKDVV-TWNAMISGYAQHGK 253
            + K    ++P       ++ +  + G L +A  L  ++  K     W A++S    HG 
Sbjct: 629 DMMKRAHNISPGLEHFSCMVDLLGRAGHLTEAKDLIDDMPMKPTAEVWGALLSACKIHGN 688

Query: 254 GEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYT 313
            E A  L  K   E   PDS +++ +      AG  D   Q    ++ D GI   P +  
Sbjct: 689 NELA-ELAAKHVFELDSPDSGSYMLMAKIYADAGKSDDSAQ-IRKLMRDKGIKKNPGYSW 746

Query: 314 CMVD 317
             VD
Sbjct: 747 MEVD 750


>gi|224107977|ref|XP_002314675.1| predicted protein [Populus trichocarpa]
 gi|222863715|gb|EEF00846.1| predicted protein [Populus trichocarpa]
          Length = 845

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 224/551 (40%), Positives = 316/551 (57%), Gaps = 18/551 (3%)

Query: 4   KTTVNWNSVLAGFAKQ---RGKLKDAQELFDKIPQPDVVSYNIMLSCILLNS--DDVVAA 58
           K  V +N++++ + +Q   R  L    E+    P+PD ++   MLS +   S  DDV   
Sbjct: 304 KNLVLYNTIMSNYVRQGLAREVLAVLGEMLKHGPRPDRIT---MLSAVSACSELDDVSCG 360

Query: 59  FDFFQRLPIKDTASW----NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIEC 114
                 +       W    N +I+ +++      A  +F  M  K  VSW+++I+G++  
Sbjct: 361 KWCHGYVLRNGLEGWDNVCNAIINMYMKCGKQEMACRVFDRMLNKTRVSWNSLIAGFVRN 420

Query: 115 GQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASS 174
           G ++ A ++F   P   +V+W  MI        V+ S  ++ ++L R+M   GI  +  +
Sbjct: 421 GDMESAWKIFSAMPDSDLVSWNTMIGAL-----VQESMFKEAIELFRVMQSEGITADKVT 475

Query: 175 LSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ 234
           +  V   C +L +L L K +H  + K  +  D    T L+ M+ +CGD + A ++F ++ 
Sbjct: 476 MVGVASACGYLGALDLAKWIHGYIKKKDIHFDMHLGTALVDMFARCGDPQSAMQVFNKMV 535

Query: 235 RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ 294
           ++DV  W A I   A  G G  A+ LFD+M  +G+KPD + FVALL A +H GLV+ G  
Sbjct: 536 KRDVSAWTAAIGAMAMEGNGTGAIELFDEMLQQGIKPDGVVFVALLTALSHGGLVEQGWH 595

Query: 295 YFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVH 354
            F SM + YGIA +  HY CMVDLLGRAG L EA+ LI  M  +P   I+G+LL+ACRVH
Sbjct: 596 IFRSMKDIYGIAPQAVHYGCMVDLLGRAGLLSEALSLINSMQMEPNDVIWGSLLAACRVH 655

Query: 355 KRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYS 414
           K +D+A +AA  +  L+P    G +V L+NIYA+  +WDDVA++RL +KE    KMPG S
Sbjct: 656 KNVDIAAYAAERISELDPER-TGIHVLLSNIYASAGRWDDVAKVRLHLKEKGAHKMPGSS 714

Query: 415 WIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLL 474
            IE+   + EF +GD  HPE+  I   LKE+  R++  GYVPDL   L  V E+ KE LL
Sbjct: 715 SIEINGKIFEFTTGDESHPEMTHIEPMLKEICCRLRDIGYVPDLTNVLLDVNEKEKEYLL 774

Query: 475 LFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHF 534
             HSEKLAIAF LI    G PIRV KNLR+C DCH   K +S    REIIVRD  RFH F
Sbjct: 775 SRHSEKLAIAFALISTGQGMPIRVAKNLRICSDCHSFAKLVSKSYSREIIVRDNNRFHFF 834

Query: 535 KDGTCSCGDYW 545
           + G CSCGDYW
Sbjct: 835 QQGFCSCGDYW 845



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 92/364 (25%), Positives = 163/364 (44%), Gaps = 50/364 (13%)

Query: 13  LAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTAS 72
           L  F  + G++   + +FDK+ + +VVS+  ++           A   FF+ + +    +
Sbjct: 180 LIHFYGECGEIDCMRRVFDKMSERNVVSWTSLIGGYAKRGCYKEAVSLFFEMVEVGIRPN 239

Query: 73  WNTMISGFVQKKNMAKARDLFLAMP----------EKNSVSWSAMISGYIECGQLDKAVE 122
             TM+ G +     AK +DL L             E N++  +A++  Y++CG +DKA +
Sbjct: 240 SVTMV-GVISA--CAKLQDLQLGEQVCTCIGELELEVNALMVNALVDMYMKCGAIDKARK 296

Query: 123 LFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGC 182
           +F     K++V +  ++S Y++ G      A + L +L  M+  G RP+  ++ S +  C
Sbjct: 297 IFDECVDKNLVLYNTIMSNYVRQGL-----AREVLAVLGEMLKHGPRPDRITMLSAVSAC 351

Query: 183 SHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWN 242
           S L  +  GK  H  V ++ L         +I+MY KCG  E AC++F  +  K  V+WN
Sbjct: 352 SELDDVSCGKWCHGYVLRNGLEGWDNVCNAIINMYMKCGKQEMACRVFDRMLNKTRVSWN 411

Query: 243 AMISGYAQHGKGEKALRLFDKMKD-------------------------------EGMKP 271
           ++I+G+ ++G  E A ++F  M D                               EG+  
Sbjct: 412 SLIAGFVRNGDMESAWKIFSAMPDSDLVSWNTMIGALVQESMFKEAIELFRVMQSEGITA 471

Query: 272 DSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDL 331
           D +T V +  AC + G +DL  ++    +    I       T +VD+  R G    A+ +
Sbjct: 472 DKVTMVGVASACGYLGALDLA-KWIHGYIKKKDIHFDMHLGTALVDMFARCGDPQSAMQV 530

Query: 332 IKKM 335
             KM
Sbjct: 531 FNKM 534



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 71/255 (27%), Positives = 129/255 (50%), Gaps = 15/255 (5%)

Query: 86  MAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKF 145
           M   RD+F+          +++I  Y ECG++D    +F     ++VV+WT++I GY K 
Sbjct: 168 MGFERDMFVE---------NSLIHFYGECGEIDCMRRVFDKMSERNVVSWTSLIGGYAKR 218

Query: 146 GYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCK 205
           G  +     + + L   M+ +GIRPN+ ++  V+  C+ L  LQLG+QV   + +  L  
Sbjct: 219 GCYK-----EAVSLFFEMVEVGIRPNSVTMVGVISACAKLQDLQLGEQVCTCIGELELEV 273

Query: 206 DTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMK 265
           +   +  L+ MY KCG ++ A K+F E   K++V +N ++S Y + G   + L +  +M 
Sbjct: 274 NALMVNALVDMYMKCGAIDKARKIFDECVDKNLVLYNTIMSNYVRQGLAREVLAVLGEML 333

Query: 266 DEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKL 325
             G +PD IT ++ + AC+    V  G ++    V   G+    +    ++++  + GK 
Sbjct: 334 KHGPRPDRITMLSAVSACSELDDVSCG-KWCHGYVLRNGLEGWDNVCNAIINMYMKCGKQ 392

Query: 326 VEAVDLIKKMPFKPQ 340
             A  +  +M  K +
Sbjct: 393 EMACRVFDRMLNKTR 407



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 54/199 (27%), Positives = 102/199 (51%), Gaps = 9/199 (4%)

Query: 102 VSWSAMISGYIECGQLD------KAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAED 155
           +S + +IS   E G  +      KA+ELF       ++    M S  ++ G+        
Sbjct: 66  LSLTNLISSCTEMGTFESLEYAQKALELF--IEDNGIMGTHYMFSSLIR-GFSACGLGYK 122

Query: 156 GLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLIS 215
            + + R ++ +G  P+  +   VL  C+  ++L  G QVH  + K    +D      LI 
Sbjct: 123 AIVVFRQLMCMGAVPDNFTFPFVLSACTKSAALTEGFQVHGAIVKMGFERDMFVENSLIH 182

Query: 216 MYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSIT 275
            Y +CG+++   ++F ++  ++VV+W ++I GYA+ G  ++A+ LF +M + G++P+S+T
Sbjct: 183 FYGECGEIDCMRRVFDKMSERNVVSWTSLIGGYAKRGCYKEAVSLFFEMVEVGIRPNSVT 242

Query: 276 FVALLLACNHAGLVDLGIQ 294
            V ++ AC     + LG Q
Sbjct: 243 MVGVISACAKLQDLQLGEQ 261



 Score = 48.1 bits (113), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 56/230 (24%), Positives = 95/230 (41%), Gaps = 44/230 (19%)

Query: 173 SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLED------A 226
           SS +     C  ++ L   KQ+H  + K+ L     +LT LIS   + G  E       A
Sbjct: 34  SSPTGSFKKCKTMTEL---KQLHSQITKNGLNHHPLSLTNLISSCTEMGTFESLEYAQKA 90

Query: 227 CKLFLEIQ--RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 284
            +LF+E          ++++I G++  G G KA+ +F ++   G  PD+ TF  +L AC 
Sbjct: 91  LELFIEDNGIMGTHYMFSSLIRGFSACGLGYKAIVVFRQLMCMGAVPDNFTFPFVLSACT 150

Query: 285 -----------HAGLVDLGIQ----YFDSMVNDYGIAAKPD---------------HYTC 314
                      H  +V +G +      +S+++ YG   + D                +T 
Sbjct: 151 KSAALTEGFQVHGAIVKMGFERDMFVENSLIHFYGECGEIDCMRRVFDKMSERNVVSWTS 210

Query: 315 MVDLLGRAGKLVEAVDLIKKM---PFKPQPAIFGTLLSACRVHKRLDLAE 361
           ++    + G   EAV L  +M     +P       ++SAC   + L L E
Sbjct: 211 LIGGYAKRGCYKEAVSLFFEMVEVGIRPNSVTMVGVISACAKLQDLQLGE 260


>gi|357521373|ref|XP_003630975.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524997|gb|AET05451.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 701

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 209/525 (39%), Positives = 310/525 (59%), Gaps = 47/525 (8%)

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM-------PEKNSVS----------- 103
           F  +P++D  SWNT+I+GF Q     +A D+   M       P+  ++S           
Sbjct: 183 FDMMPVRDVVSWNTVIAGFAQNGMYVEALDMVREMGKNGKLKPDSFTLSSILPIFAEHVD 242

Query: 104 ----------------------WSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISG 141
                                  S++I  Y +C +L+ ++  F + P K  ++W ++I+G
Sbjct: 243 VNKGKEIHGYAVRNGFDGDVFIGSSLIDMYAKCNRLECSLRAFYILPRKDAISWNSIIAG 302

Query: 142 YMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKS 201
                 V+N   + GL   R M+   ++P A S SSV+  C+HL++L LG+Q+H  + + 
Sbjct: 303 C-----VQNGEFDRGLGFFRRMLKENVKPMAVSFSSVIPACAHLTALSLGRQLHGCIVRL 357

Query: 202 PLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLF 261
               +    + L+ MY KCG+++ A  +F  I ++D+V W A+I G A HG    A+ LF
Sbjct: 358 GFDDNEFIASSLVDMYAKCGNIKMARYVFDRIDKRDMVAWTAIIMGCAMHGHALDAVSLF 417

Query: 262 DKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGR 321
           + M ++G++P  + F+A+L AC+HAGLVD G +YF+SM  D+GIA   +HY  + DLLGR
Sbjct: 418 ENMLEDGVRPCYVAFMAVLTACSHAGLVDEGWRYFNSMERDFGIAPGLEHYAAVADLLGR 477

Query: 322 AGKLVEAVDLIKKMP-FKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYV 380
           AG+L EA D I  M   +P  +++  LL+ACR HK ++LAE     L +++  N  G YV
Sbjct: 478 AGRLEEAYDFISNMRGVQPTGSVWSILLAACRAHKSVELAEKVLDKLLSVDSENM-GAYV 536

Query: 381 QLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHE 440
            ++NIY+A ++W D AR+R+ M++  + K P  SWIEVG  VH F +GD+ HP    I++
Sbjct: 537 LMSNIYSAAQRWKDAARLRIHMRKKGLKKTPACSWIEVGNQVHTFMAGDKSHPYYDKINK 596

Query: 441 KLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFK 500
            L  L ++M+  GYV D    LH V EE+K +LL  HSE+LAIA+G+I    GT IRV K
Sbjct: 597 ALDVLLEQMEKEGYVIDTNQVLHDVDEELKRELLHNHSERLAIAYGIISTTAGTTIRVIK 656

Query: 501 NLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           N+RVC DCH A K+I+ I  REI VRD +RFHHFK+G+CSCGDYW
Sbjct: 657 NIRVCADCHTAIKFITKIVGREITVRDNSRFHHFKNGSCSCGDYW 701



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 83/318 (26%), Positives = 154/318 (48%), Gaps = 31/318 (9%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVV 133
           N +I+ + +  N  K  D+F   P++             E G +D   ++F + PV+ VV
Sbjct: 149 NALINTYAKFHNAGKVFDVF---PKRG------------ESG-IDCVKKVFDMMPVRDVV 192

Query: 134 AWTAMISGYMKFG-YVENSWAEDGLKLLRMMIGLG-IRPNASSLSSVLLGCSHLSSLQLG 191
           +W  +I+G+ + G YVE       L ++R M   G ++P++ +LSS+L   +    +  G
Sbjct: 193 SWNTVIAGFAQNGMYVE------ALDMVREMGKNGKLKPDSFTLSSILPIFAEHVDVNKG 246

Query: 192 KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQH 251
           K++H    ++    D    + LI MY KC  LE + + F  + RKD ++WN++I+G  Q+
Sbjct: 247 KEIHGYAVRNGFDGDVFIGSSLIDMYAKCNRLECSLRAFYILPRKDAISWNSIIAGCVQN 306

Query: 252 GKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDH 311
           G+ ++ L  F +M  E +KP +++F +++ AC H   + LG Q    +V   G       
Sbjct: 307 GEFDRGLGFFRRMLKENVKPMAVSFSSVIPACAHLTALSLGRQLHGCIVR-LGFDDNEFI 365

Query: 312 YTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLF-NL 370
            + +VD+  + G +  A  +  ++  +   A +  ++  C +H         A++LF N+
Sbjct: 366 ASSLVDMYAKCGNIKMARYVFDRIDKRDMVA-WTAIIMGCAMHGH----ALDAVSLFENM 420

Query: 371 NPANAAGCYVQLANIYAA 388
                  CYV    +  A
Sbjct: 421 LEDGVRPCYVAFMAVLTA 438


>gi|297822535|ref|XP_002879150.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324989|gb|EFH55409.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 872

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 214/516 (41%), Positives = 305/516 (59%), Gaps = 43/516 (8%)

Query: 67  IKDTASWNTMISGFVQKKNMAKARDLF-------------------LAMP---------- 97
           + +  SW  MISGF+Q     +A  LF                    A+P          
Sbjct: 363 LGNVVSWTAMISGFLQNDGKEEAVGLFSEMKRKGVRPNEFTYSVILTALPVISPSEVHAQ 422

Query: 98  ------EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENS 151
                 E++S   +A++  Y++ G++D+A ++F     K +VAW+AM++GY + G  E +
Sbjct: 423 VVKTNYERSSTVGTALLDAYVKLGKVDEAAKVFSGIDNKDIVAWSAMLAGYAQAGETEAA 482

Query: 152 WAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLS-SLQLGKQVHQLVFKSPLCKDTTAL 210
                +K+   +   G++PN  + SS+L  C+  + S+  GKQ H    KS L       
Sbjct: 483 -----IKIFSELTKGGVKPNEFTFSSILNVCAATTASMGQGKQFHGFAIKSRLDSSLCVS 537

Query: 211 TPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMK 270
           + L++MY K G +E A ++F   + KD+V+WN+MISGYAQHG+  KAL +F +MK   +K
Sbjct: 538 SALLTMYAKKGHIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVK 597

Query: 271 PDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVD 330
            DS+TF+ +  AC HAGLV+ G +YFD MV D  IA   +H +CMVDL  RAG+L +A+ 
Sbjct: 598 MDSVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMK 657

Query: 331 LIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMK 390
           +I  MP      I+ T+L+ACRVHK+ +L   AA  +  + P ++A  YV L+N+YA   
Sbjct: 658 VIDNMPNLAGSTIWRTILAACRVHKKTELGRLAAEKIIAMIPEDSAA-YVLLSNMYAESG 716

Query: 391 KWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMK 450
            W + A++R  M E NV K PGYSWIEV    + F +GDR HP    I+ KL++L  R+K
Sbjct: 717 DWQERAKVRKLMNERNVKKEPGYSWIEVKNKTYAFLAGDRSHPLKDQIYMKLEDLSTRLK 776

Query: 451 LAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHR 510
             GY PD  + L  + +E KE +L  HSE+LAIAFGLI  P G+P+ + KNLRVCGDCH 
Sbjct: 777 DLGYEPDTSYVLQDIDDEHKEAVLAQHSERLAIAFGLIATPKGSPLLIIKNLRVCGDCHV 836

Query: 511 ATKYISAIEKREIIVRDTTRFHHF-KDGTCSCGDYW 545
             K I+ IE+REI+VRD+ RFHHF  DG CSCGD+W
Sbjct: 837 VIKLIAKIEEREIVVRDSNRFHHFSSDGVCSCGDFW 872



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 87/332 (26%), Positives = 147/332 (44%), Gaps = 21/332 (6%)

Query: 17  AKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLN--SDDVVAAFDFFQRLPIKDTASWN 74
           A    +L  A  LFDK P  D  SY  +L     +  + +    F   Q L ++   S  
Sbjct: 41  AASSSRLYYAHNLFDKSPDRDRESYTSLLFGFSRDGRTQEATRLFLNIQHLGMEMDCS-- 98

Query: 75  TMISGFVQKKNMAKARDLFLAMPEKNSVSW---------SAMISGYIECGQLDKAVELFK 125
             I   V K +     +LF        + +         ++++  Y++         +F 
Sbjct: 99  --IFSSVLKVSATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRNVFD 156

Query: 126 VAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHL 185
               ++VV WT +ISGY +     NS  E+ L L   M   G +PN+ + ++ L   +  
Sbjct: 157 EMKERNVVTWTTLISGYAR-----NSLNEEVLTLFMRMQDEGTQPNSFTFAAALGVLAEE 211

Query: 186 SSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMI 245
                G QVH +V K+ L K       LI++Y KCG++  A  LF + + K VVTWN+MI
Sbjct: 212 GVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMI 271

Query: 246 SGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGI 305
           SGYA +G   +AL +F  M+   ++    +F +++  C +   +    Q   S+V  YG 
Sbjct: 272 SGYAANGLDLEALGMFYSMRLNHVRLSESSFASIIKLCANLKELRFTEQLHCSVVK-YGF 330

Query: 306 AAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPF 337
               +  T ++    +   +++A+ L K+  F
Sbjct: 331 VFDQNIRTALMVAYSKCMAMLDALRLFKETGF 362



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 64/230 (27%), Positives = 111/230 (48%), Gaps = 6/230 (2%)

Query: 110 GYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIR 169
           G     +L  A  LF  +P +   ++T+++     FG+  +   ++  +L   +  LG+ 
Sbjct: 40  GAASSSRLYYAHNLFDKSPDRDRESYTSLL-----FGFSRDGRTQEATRLFLNIQHLGME 94

Query: 170 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 229
            + S  SSVL   + L     G+Q+H    K     D +  T L+  Y K  + +D   +
Sbjct: 95  MDCSIFSSVLKVSATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRNV 154

Query: 230 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLV 289
           F E++ ++VVTW  +ISGYA++   E+ L LF +M+DEG +P+S TF A L      G+ 
Sbjct: 155 FDEMKERNVVTWTTLISGYARNSLNEEVLTLFMRMQDEGTQPNSFTFAAALGVLAEEGVG 214

Query: 290 DLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKP 339
             G+Q    +V + G+         +++L  + G + +A  L  K   K 
Sbjct: 215 GRGLQVHTVVVKN-GLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKS 263


>gi|449458017|ref|XP_004146744.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Cucumis sativus]
          Length = 678

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 212/509 (41%), Positives = 302/509 (59%), Gaps = 43/509 (8%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFK-------- 125
           N +++ + +   + +AR +   MP ++ VSW++M++GY + GQ D A+E+ K        
Sbjct: 176 NALVAMYGKCGCLREARKVLDQMPYRDVVSWNSMVAGYAQSGQFDDALEICKEMDSLNLN 235

Query: 126 --------VAPV---------------------KSVVAWTAMISGYMKFGYVENSWAEDG 156
                   ++PV                     K++++W  MI+ Y     V NS   + 
Sbjct: 236 HDAGTMASLSPVVCYTSLENVQYIHNMFERMTKKNLISWNVMIAIY-----VNNSMPNEA 290

Query: 157 LKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISM 216
           + L   M   G++P+A +++S+L  C  LS+L LG+++H+ + K  L  +      L+ M
Sbjct: 291 VSLFLQMEECGMKPDAVTIASLLPACGDLSALFLGRRLHKYIEKGNLRPNLLLENALLDM 350

Query: 217 YCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITF 276
           Y KCG LE+A  +F +++ +DVV+W +M+S Y + G+G  A+ LF KM D G  PDSI F
Sbjct: 351 YAKCGCLEEARDVFDKMRLRDVVSWTSMMSAYGRSGQGYDAVALFAKMLDSGQNPDSIAF 410

Query: 277 VALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 336
           V++L AC+H GL+D G  YF  M   YGI  + +H+ CMVDL GRAG++ EA   IK+MP
Sbjct: 411 VSVLSACSHTGLLDQGRHYFRMMTEQYGIVPRIEHFACMVDLFGRAGEVEEAYSFIKQMP 470

Query: 337 FKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVA 396
            +P   ++G LLSACRVH ++D+   AA  LF L P   +G YV L+NIYA    W DV 
Sbjct: 471 MEPNERVWGALLSACRVHSKMDIGLVAADLLFQLAPKQ-SGYYVLLSNIYAKAGMWKDVM 529

Query: 397 RIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVP 456
            +R +MK+  + K+PG S +E+   VH F +GD+ HP+  +I+ +L  L  +MK  GY+P
Sbjct: 530 NVRYAMKKIGIKKVPGISNVELNGQVHTFLAGDQYHPQAKNIYGELDVLVGKMKELGYIP 589

Query: 457 DLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYIS 516
             E ALH V  E KE  L  HSEKLAI F ++    GTPIR+ KNLRVCGDCH A K IS
Sbjct: 590 QTESALHDVEVEDKECHLAIHSEKLAIVFAILNTKQGTPIRITKNLRVCGDCHIAIKLIS 649

Query: 517 AIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
            I  R IIVRD  RFHHF +G CSCGDYW
Sbjct: 650 KIVSRNIIVRDCNRFHHFSNGICSCGDYW 678



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 79/306 (25%), Positives = 137/306 (44%), Gaps = 24/306 (7%)

Query: 107 MISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGL 166
           ++  Y   G+   A  +F  +  K+VV +  MI  Y     V N+   + L + ++M+  
Sbjct: 77  LMRAYSAQGETSVARYIFDRSLEKNVVFFNVMIRSY-----VNNNLYVEALSIFQVMLSC 131

Query: 167 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 226
              P+  +   VL  CS L +L++G QVH  + K  L  +      L++MY KCG L +A
Sbjct: 132 AFNPDHYTFPCVLKACSGLDNLRVGLQVHDAIVKVGLDTNLFIGNALVAMYGKCGCLREA 191

Query: 227 CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHA 286
            K+  ++  +DVV+WN+M++GYAQ G+ + AL +  +M    +  D+ T  +L     + 
Sbjct: 192 RKVLDQMPYRDVVSWNSMVAGYAQSGQFDDALEICKEMDSLNLNHDAGTMASLSPVVCYT 251

Query: 287 GLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP---FKPQPAI 343
            L +  +QY  +M  +         +  M+ +        EAV L  +M     KP    
Sbjct: 252 SLEN--VQYIHNMF-ERMTKKNLISWNVMIAIYVNNSMPNEAVSLFLQMEECGMKPDAVT 308

Query: 344 FGTLLSAC----------RVHKRLDLAEFAAMNLFN---LNPANAAGCYVQLANIYAAMK 390
             +LL AC          R+HK ++        L     L+     GC  +  +++  M+
Sbjct: 309 IASLLPACGDLSALFLGRRLHKYIEKGNLRPNLLLENALLDMYAKCGCLEEARDVFDKMR 368

Query: 391 KWDDVA 396
             D V+
Sbjct: 369 LRDVVS 374



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 55/208 (26%), Positives = 87/208 (41%), Gaps = 17/208 (8%)

Query: 190 LGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYA 249
           L K   ++V    L  D T    L+  Y   G+   A  +F     K+VV +N MI  Y 
Sbjct: 54  LNKLHSKIVINEHLRIDPTLAIKLMRAYSAQGETSVARYIFDRSLEKNVVFFNVMIRSYV 113

Query: 250 QHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKP 309
            +    +AL +F  M      PD  TF  +L AC+    + +G+Q  D++V   G+    
Sbjct: 114 NNNLYVEALSIFQVMLSCAFNPDHYTFPCVLKACSGLDNLRVGLQVHDAIVK-VGLDTNL 172

Query: 310 DHYTCMVDLLGRAGKLVEAVDLIKKMPFK------------PQPAIFGTLLSACRVHKRL 357
                +V + G+ G L EA  ++ +MP++             Q   F   L  C+    L
Sbjct: 173 FIGNALVAMYGKCGCLREARKVLDQMPYRDVVSWNSMVAGYAQSGQFDDALEICKEMDSL 232

Query: 358 DLAEFAAMNLFNLNPANAAGCYVQLANI 385
           +L   A   + +L+P     CY  L N+
Sbjct: 233 NLNHDAG-TMASLSP---VVCYTSLENV 256


>gi|357486999|ref|XP_003613787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355515122|gb|AES96745.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 586

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 216/532 (40%), Positives = 309/532 (58%), Gaps = 25/532 (4%)

Query: 20  RGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISG 79
           +  ++ A +LFD+I QP++V +N M       +D            P++    +   +  
Sbjct: 74  KASMEHAHQLFDQITQPNIVLFNTMARGYARLND------------PLRMITHFRRCLRL 121

Query: 80  FVQKKNMAKARDLF-----LAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVA 134
             + K +A+ + L      L + + N      +I+ Y  CG +D +  +F       VVA
Sbjct: 122 VSKVKALAEGKQLHCFAVKLGVSD-NMYVVPTLINMYTACGDIDASRRVFDKIDEPCVVA 180

Query: 135 WTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQV 194
           + A+I          N+ A + L L R +  +G++P   ++  VL  C+ L SL LG+ +
Sbjct: 181 YNAII-----MSLARNNRANEALALFRELQEIGLKPTDVTMLVVLSSCALLGSLDLGRWM 235

Query: 195 HQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKG 254
           H+ V K    +     T LI MY KCG L+DA  +F ++ ++D   W+A+I  YA HG G
Sbjct: 236 HEYVKKYGFDRYVKVNTTLIDMYAKCGSLDDAVNVFRDMPKRDTQAWSAIIVAYATHGDG 295

Query: 255 EKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTC 314
            +A+ + ++MK E ++PD ITF+ +L AC+H GLV+ G +YF  M N+YGI     HY C
Sbjct: 296 FQAISMLNEMKKEKVQPDEITFLGILYACSHNGLVEEGFEYFHGMTNEYGIVPSIKHYGC 355

Query: 315 MVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPAN 374
           MVDLLGRAG+L EA   I ++P KP P ++ TLLSAC  H  +++ +     +F L+ ++
Sbjct: 356 MVDLLGRAGRLDEAYKFIDELPIKPTPILWRTLLSACSTHGNVEMGKRVIERIFELDDSH 415

Query: 375 AAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPE 434
             G YV  +N+ A   KWDDV  +R +M +   VK+PG S IEV  VVHEF +G+ VH  
Sbjct: 416 -GGDYVIFSNLCARYGKWDDVNHLRKTMIDKGAVKIPGCSSIEVNNVVHEFFAGEGVHST 474

Query: 435 LVSIHEKLKELEKRMKLAGYVPDLEFALHA-VGEEVKEQLLLFHSEKLAIAFGLIKVPLG 493
             ++H  L EL K +K AGYVPD     +A + +E KE +L +HSEKLAI FGL+  P G
Sbjct: 475 STTLHRALDELVKELKSAGYVPDTSLVFYADMEDEEKEIILRYHSEKLAITFGLLNTPPG 534

Query: 494 TPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           T IRV KNLRVCGDCH A K+IS I  R+II+RD  RFHHFKDG CSCGDYW
Sbjct: 535 TTIRVVKNLRVCGDCHNAAKFISLIFGRQIILRDVQRFHHFKDGKCSCGDYW 586


>gi|225450539|ref|XP_002277347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 808

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 225/555 (40%), Positives = 328/555 (59%), Gaps = 20/555 (3%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELF-----DKIPQPDVVSYNIMLSCILLNSDDV 55
           M+ K  V+W+++++G+ +Q G  ++A  +F     + +   +VV  +++ +C  L+   +
Sbjct: 264 MDEKDMVSWSALISGY-EQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSACAHLS---I 319

Query: 56  VAAFDFFQRLPIK-DTASW----NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISG 110
           V        L I+    S+    N +I  +     +  A+ LF      + +SW++MISG
Sbjct: 320 VKTGKMIHGLVIRMGIESYVNLQNALIHMYSGSGEIMDAQKLFNGSHNLDQISWNSMISG 379

Query: 111 YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRP 170
            ++CG ++KA  LF V P K +V+W+A+ISGY +     + ++E       M +G  IRP
Sbjct: 380 CMKCGSVEKARALFDVMPEKDIVSWSAVISGYAQ----HDCFSETLALFHEMQLG-QIRP 434

Query: 171 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 230
           + + L SV+  C+HL++L  GK VH  + K+ L  +    T L+ MY KCG +E+A ++F
Sbjct: 435 DETILVSVISACTHLAALDQGKWVHAYIRKNGLKVNVILGTTLLDMYMKCGCVENALEVF 494

Query: 231 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVD 290
             ++ K V +WNA+I G A +G  E++L +F +MK+ G+ P+ ITF+ +L AC H GLVD
Sbjct: 495 NGMEEKGVSSWNALIIGLAVNGLVERSLDMFSEMKNNGVIPNEITFMGVLGACRHMGLVD 554

Query: 291 LGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSA 350
            G  +F SM+  +GI     HY CMVDLLGRAG L EA  LI+ MP  P  A +G LL A
Sbjct: 555 EGRCHFASMIEKHGIEPNVKHYGCMVDLLGRAGLLNEAEKLIESMPMAPDVATWGALLGA 614

Query: 351 CRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKM 410
           C+ H   ++ E     L  L P +  G +V L+NI+A+   W+DV  +R  MK+  VVK 
Sbjct: 615 CKKHGDTEMGERVGRKLIELQP-DHDGFHVLLSNIFASKGDWEDVLEVRGMMKQQGVVKT 673

Query: 411 PGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVK 470
           PG S IE   VVHEF +GD+ HP +  +   L E+ KR+K+ GY PD       + EE K
Sbjct: 674 PGCSLIEANGVVHEFLAGDKTHPWINKVEGMLNEMAKRLKMEGYAPDTNEVSLDIDEEEK 733

Query: 471 EQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTR 530
           E  L  HSEKLAIAFGL+ +   TPIR+ KNLR+C DCH A K IS    REI+VRD  R
Sbjct: 734 ETTLFRHSEKLAIAFGLLTISPPTPIRIMKNLRICNDCHTAAKLISKAYAREIVVRDRHR 793

Query: 531 FHHFKDGTCSCGDYW 545
           FH+FK+G CSC DYW
Sbjct: 794 FHYFKEGACSCMDYW 808



 Score =  124 bits (312), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 96/349 (27%), Positives = 159/349 (45%), Gaps = 69/349 (19%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G ++DA++LFD+ P  D VS+N +L+   +   DV  A   F ++P ++  + N+MI   
Sbjct: 190 GNMRDARKLFDESPVLDSVSWNSILAG-YVKKGDVEEAKLIFDQMPQRNIVASNSMIVLL 248

Query: 81  VQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMIS 140
            +   + +A  LF  M EK+ VSWSA+ISGY + G  ++A+ +F                
Sbjct: 249 GKMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMF---------------- 292

Query: 141 GYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK 200
                  +E             M   G+R +   + SVL  C+HLS ++ GK +H LV +
Sbjct: 293 -------IE-------------MNANGMRLDEVVVVSVLSACAHLSIVKTGKMIHGLVIR 332

Query: 201 SPLCKDTTALTPLISMYC-------------------------------KCGDLEDACKL 229
             +         LI MY                                KCG +E A  L
Sbjct: 333 MGIESYVNLQNALIHMYSGSGEIMDAQKLFNGSHNLDQISWNSMISGCMKCGSVEKARAL 392

Query: 230 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLV 289
           F  +  KD+V+W+A+ISGYAQH    + L LF +M+   ++PD    V+++ AC H   +
Sbjct: 393 FDVMPEKDIVSWSAVISGYAQHDCFSETLALFHEMQLGQIRPDETILVSVISACTHLAAL 452

Query: 290 DLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 338
           D G ++  + +   G+       T ++D+  + G +  A+++   M  K
Sbjct: 453 DQG-KWVHAYIRKNGLKVNVILGTTLLDMYMKCGCVENALEVFNGMEEK 500



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 77/334 (23%), Positives = 138/334 (41%), Gaps = 87/334 (26%)

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVS-------------- 103
           +   F R+   +   WNTM+  ++Q  +  KA  L+  M  KN+V               
Sbjct: 94  SLQIFDRIENSNGFMWNTMMRAYIQSNSAEKALLLYKLMV-KNNVGPDNYTYPLVVQACA 152

Query: 104 --------------------------WSAMISGYIECGQLDKAVELFKVAPVKSVVAWTA 137
                                      + +I+ Y  CG +  A +LF  +PV   V+W +
Sbjct: 153 VRLLEFGGKEIHDHVLKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNS 212

Query: 138 MISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQL 197
           +++GY+K G VE +                                            +L
Sbjct: 213 ILAGYVKKGDVEEA--------------------------------------------KL 228

Query: 198 VFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKA 257
           +F     ++  A   +I +  K G + +A KLF E+  KD+V+W+A+ISGY Q+G  E+A
Sbjct: 229 IFDQMPQRNIVASNSMIVLLGKMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEA 288

Query: 258 LRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVD 317
           L +F +M   GM+ D +  V++L AC H  +V  G +    +V   GI +  +    ++ 
Sbjct: 289 LVMFIEMNANGMRLDEVVVVSVLSACAHLSIVKTG-KMIHGLVIRMGIESYVNLQNALIH 347

Query: 318 LLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSAC 351
           +   +G++++A  L        Q + + +++S C
Sbjct: 348 MYSGSGEIMDAQKLFNGSHNLDQIS-WNSMISGC 380



 Score = 43.5 bits (101), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 38/166 (22%), Positives = 71/166 (42%), Gaps = 6/166 (3%)

Query: 173 SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCG--DLEDACKLF 230
           S L + L  C +L   Q  + + Q++  +    DT A + L+          L+ + ++F
Sbjct: 42  SILETHLHNCHNLK--QFNRILSQMIL-TGFISDTFAASRLLKFSTDSPFIGLDYSLQIF 98

Query: 231 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVD 290
             I+  +   WN M+  Y Q    EKAL L+  M    + PD+ T+  ++ AC    L++
Sbjct: 99  DRIENSNGFMWNTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQACA-VRLLE 157

Query: 291 LGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 336
            G +     V   G  +       ++++    G + +A  L  + P
Sbjct: 158 FGGKEIHDHVLKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESP 203


>gi|449520543|ref|XP_004167293.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g68930-like [Cucumis
           sativus]
          Length = 695

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 214/492 (43%), Positives = 295/492 (59%), Gaps = 15/492 (3%)

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM------PEKNSVSWSAMISGYIEC 114
            F  L  K+  SWN MISG+ +     K   L   M      P++  V+ S +I+ Y +C
Sbjct: 212 LFDCLTKKNLVSWNLMISGYAKNGQPEKCIGLLHQMRLSGHMPDQ--VTMSTIIAAYCQC 269

Query: 115 GQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASS 174
           G++D+A  +F     K +V WTAM+ GY K     N   ED L L   M+   I P++ +
Sbjct: 270 GRVDEARRVFSEFKEKDIVCWTAMMVGYAK-----NGREEDALLLFNEMLLEHIEPDSYT 324

Query: 175 LSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ 234
           LSSV+  C+ L+SL  G+ VH     + L  +    + LI MY KCG ++DA  +F  + 
Sbjct: 325 LSSVVSSCAKLASLHHGQAVHGKSILAGLNNNLLVSSALIDMYSKCGFIDDARSVFNLMP 384

Query: 235 RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ 294
            ++VV+WNAMI G AQ+G  + AL LF+ M  +  KPD++TF+ +L AC H   ++ G +
Sbjct: 385 TRNVVSWNAMIVGCAQNGHDKDALELFENMLQQKFKPDNVTFIGILSACLHCNWIEQGQE 444

Query: 295 YFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVH 354
           YFDS+ N +G+    DHY CMV+LLGR G++ +AV LIK M   P   I+ TLLS C   
Sbjct: 445 YFDSISNQHGMTPTLDHYACMVNLLGRTGRIEQAVALIKNMAHDPDFLIWSTLLSICSTK 504

Query: 355 KRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYS 414
             +  AE AA +LF L+P  A   Y+ L+N+YA+M +W DVA +R  MK  NV K  G+S
Sbjct: 505 GDIVNAEVAARHLFELDPTIAVP-YIMLSNMYASMGRWKDVASVRNLMKSKNVKKFAGFS 563

Query: 415 WIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLL 474
           WIE+   VH F S DR HPE   I+EKL  L  +++  G+ P+    LH VGE+ K + +
Sbjct: 564 WIEIDNEVHRFTSEDRTHPESEDIYEKLNMLIGKLQEEGFTPNTNLVLHDVGEDEKFKSI 623

Query: 475 LFHSEKLAIAFGLIKVPLG-TPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHH 533
            FHSEKLA+AFGLIK P G +PIR+ KN+R+C DCH   K+ S I  R+II+RD+ RFHH
Sbjct: 624 CFHSEKLALAFGLIKKPNGISPIRIIKNIRICNDCHEFMKFASRIIGRQIILRDSNRFHH 683

Query: 534 FKDGTCSCGDYW 545
           F  G CSC D W
Sbjct: 684 FSTGKCSCNDNW 695



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 99/375 (26%), Positives = 168/375 (44%), Gaps = 96/375 (25%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNS--DDVVAAFDFFQRLPI 67
           N +L  +AK  GKL+DAQ LFDK+ + D  S+N +LS    +    ++ A FD   R+P 
Sbjct: 62  NQLLHLYAK-FGKLRDAQNLFDKMLKRDXFSWNALLSAYAKSGSIQNLKATFD---RMPF 117

Query: 68  KDTASWNTMISGFVQKKNMAKARDLFLAMPEK---------------------------- 99
           +D+ S+NT I+GF       ++ +LF  M  +                            
Sbjct: 118 RDSVSYNTTIAGFSGNSCPQESLELFKRMQREGFEPTEYTIVSILNASAQLLDLRYGKQI 177

Query: 100 -----------NSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYV 148
                      N   W+A+   Y +CG++++A  LF     K++V+W  MISGY K G  
Sbjct: 178 HGSIIVRNFLGNVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKNGQP 237

Query: 149 ENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTT 208
           E              IGL                           +HQ+     +  D  
Sbjct: 238 EKC------------IGL---------------------------LHQMRLSGHM-PDQV 257

Query: 209 ALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEG 268
            ++ +I+ YC+CG +++A ++F E + KD+V W AM+ GYA++G+ E AL LF++M  E 
Sbjct: 258 TMSTIIAAYCQCGRVDEARRVFSEFKEKDIVCWTAMMVGYAKNGREEDALLLFNEMLLEH 317

Query: 269 MKPDSITFVALLLACN-----HAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAG 323
           ++PDS T  +++ +C      H G    G      + N+  ++      + ++D+  + G
Sbjct: 318 IEPDSYTLSSVVSSCAKLASLHHGQAVHGKSILAGLNNNLLVS------SALIDMYSKCG 371

Query: 324 KLVEAVDLIKKMPFK 338
            + +A  +   MP +
Sbjct: 372 FIDDARSVFNLMPTR 386



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 77/286 (26%), Positives = 140/286 (48%), Gaps = 13/286 (4%)

Query: 69  DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAP 128
           D+   N ++  + +   +  A++LF  M +++  SW+A++S Y + G +      F   P
Sbjct: 57  DSFLHNQLLHLYAKFGKLRDAQNLFDKMLKRDXFSWNALLSAYAKSGSIQNLKATFDRMP 116

Query: 129 VKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSL 188
            +  V++   I+G+       NS  ++ L+L + M   G  P   ++ S+L   + L  L
Sbjct: 117 FRDSVSYNTTIAGFSG-----NSCPQESLELFKRMQREGFEPTEYTIVSILNASAQLLDL 171

Query: 189 QLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGY 248
           + GKQ+H  +       +      L  MY KCG++E A  LF  + +K++V+WN MISGY
Sbjct: 172 RYGKQIHGSIIVRNFLGNVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGY 231

Query: 249 AQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK 308
           A++G+ EK + L  +M+  G  PD +T   ++ A    G VD   + F S   +  I   
Sbjct: 232 AKNGQPEKCIGLLHQMRLSGHMPDQVTMSTIIAAYCQCGRVDEARRVF-SEFKEKDIVC- 289

Query: 309 PDHYTCMVDLLGRAGKLVEAVDLIKKM---PFKPQPAIFGTLLSAC 351
              +T M+    + G+  +A+ L  +M     +P      +++S+C
Sbjct: 290 ---WTAMMVGYAKNGREEDALLLFNEMLLEHIEPDSYTLSSVVSSC 332



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 60/292 (20%), Positives = 121/292 (41%), Gaps = 60/292 (20%)

Query: 4   KTTVNWNSVLAGFAK----------------------------------QRGKLKDAQEL 29
           K  V+WN +++G+AK                                  Q G++ +A+ +
Sbjct: 219 KNLVSWNLMISGYAKNGQPEKCIGLLHQMRLSGHMPDQVTMSTIIAAYCQCGRVDEARRV 278

Query: 30  FDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK---DTASWNTMISGFVQKKNM 86
           F +  + D+V +  M+     N  +  A   F + L      D+ + ++++S   +  ++
Sbjct: 279 FSEFKEKDIVCWTAMMVGYAKNGREEDALLLFNEMLLEHIEPDSYTLSSVVSSCAKLASL 338

Query: 87  AKARDL----FLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGY 142
              + +     LA    N +  SA+I  Y +CG +D A  +F + P ++VV+W AMI   
Sbjct: 339 HHGQAVHGKSILAGLNNNLLVSSALIDMYSKCGFIDDARSVFNLMPTRNVVSWNAMI--- 395

Query: 143 MKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSP 202
              G  +N   +D L+L   M+    +P+  +   +L  C H + ++ G++    +    
Sbjct: 396 --VGCAQNGHDKDALELFENMLQQKFKPDNVTFIGILSACLHCNWIEQGQEYFDSI---- 449

Query: 203 LCKDTTALTPLISMYC-------KCGDLEDACKLFLEIQRK-DVVTWNAMIS 246
              +   +TP +  Y        + G +E A  L   +    D + W+ ++S
Sbjct: 450 --SNQHGMTPTLDHYACMVNLLGRTGRIEQAVALIKNMAHDPDFLIWSTLLS 499


>gi|449520333|ref|XP_004167188.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Cucumis sativus]
          Length = 678

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 212/509 (41%), Positives = 302/509 (59%), Gaps = 43/509 (8%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFK-------- 125
           N +++ + +   + +AR +   MP ++ VSW++M++GY + GQ D A+E+ K        
Sbjct: 176 NALVAMYGKCGCLREARKVLDQMPYRDVVSWNSMVAGYAQSGQFDDALEICKEMDSLNLN 235

Query: 126 --------VAPV---------------------KSVVAWTAMISGYMKFGYVENSWAEDG 156
                   ++PV                     K++++W  MI+ Y     V NS   + 
Sbjct: 236 HDAGTMASLSPVVCYTSLENVQYIHNMFERMTKKNLISWNVMIAIY-----VNNSMPNEA 290

Query: 157 LKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISM 216
           + L   M   G++P+A +++S+L  C  LS+L LG+++H+ + K  L  +      L+ M
Sbjct: 291 VSLFLQMEECGMKPDAVTIASLLPACGDLSALFLGRRLHKYIEKGNLQPNLLLENALLDM 350

Query: 217 YCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITF 276
           Y KCG LE+A  +F +++ +DVV+W +M+S Y + G+G  A+ LF KM D G  PDSI F
Sbjct: 351 YAKCGCLEEARDVFDKMRLRDVVSWTSMMSAYGRSGQGYDAVALFAKMLDSGQNPDSIAF 410

Query: 277 VALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 336
           V++L AC+H GL+D G  YF  M   YGI  + +H+ CMVDL GRAG++ EA   IK+MP
Sbjct: 411 VSVLSACSHTGLLDQGRHYFRMMTEQYGIVPRIEHFACMVDLFGRAGEVEEAYSFIKQMP 470

Query: 337 FKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVA 396
            +P   ++G LLSACRVH ++D+   AA  LF L P   +G YV L+NIYA    W DV 
Sbjct: 471 MEPNERVWGALLSACRVHSKMDIGLVAADLLFQLAPKQ-SGYYVLLSNIYAKAGMWKDVM 529

Query: 397 RIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVP 456
            +R +MK+  + K+PG S +E+   VH F +GD+ HP+  +I+ +L  L  +MK  GY+P
Sbjct: 530 NVRYAMKKIGIKKVPGISNVELNGQVHTFLAGDQYHPQAKNIYGELDVLVGKMKELGYIP 589

Query: 457 DLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYIS 516
             E ALH V  E KE  L  HSEKLAI F ++    GTPIR+ KNLRVCGDCH A K IS
Sbjct: 590 QTESALHDVEVEDKECHLAIHSEKLAIVFAILNTKQGTPIRITKNLRVCGDCHIAIKLIS 649

Query: 517 AIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
            I  R IIVRD  RFHHF +G CSCGDYW
Sbjct: 650 KIVSRNIIVRDCNRFHHFSNGICSCGDYW 678



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 79/306 (25%), Positives = 137/306 (44%), Gaps = 24/306 (7%)

Query: 107 MISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGL 166
           ++  Y   G+   A  +F  +  K+VV +  MI  Y     V N+   + L + ++M+  
Sbjct: 77  LMRAYSAQGETSVARYIFDRSLEKNVVFFNVMIRSY-----VNNNLYVEALSIFQVMLSC 131

Query: 167 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 226
              P+  +   VL  CS L +L++G QVH  + K  L  +      L++MY KCG L +A
Sbjct: 132 AFNPDHYTFPCVLKACSGLDNLRVGLQVHDAIVKVGLDTNLFIGNALVAMYGKCGCLREA 191

Query: 227 CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHA 286
            K+  ++  +DVV+WN+M++GYAQ G+ + AL +  +M    +  D+ T  +L     + 
Sbjct: 192 RKVLDQMPYRDVVSWNSMVAGYAQSGQFDDALEICKEMDSLNLNHDAGTMASLSPVVCYT 251

Query: 287 GLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP---FKPQPAI 343
            L +  +QY  +M  +         +  M+ +        EAV L  +M     KP    
Sbjct: 252 SLEN--VQYIHNMF-ERMTKKNLISWNVMIAIYVNNSMPNEAVSLFLQMEECGMKPDAVT 308

Query: 344 FGTLLSAC----------RVHKRLDLAEFAAMNLFN---LNPANAAGCYVQLANIYAAMK 390
             +LL AC          R+HK ++        L     L+     GC  +  +++  M+
Sbjct: 309 IASLLPACGDLSALFLGRRLHKYIEKGNLQPNLLLENALLDMYAKCGCLEEARDVFDKMR 368

Query: 391 KWDDVA 396
             D V+
Sbjct: 369 LRDVVS 374



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 55/208 (26%), Positives = 87/208 (41%), Gaps = 17/208 (8%)

Query: 190 LGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYA 249
           L K   ++V    L  D T    L+  Y   G+   A  +F     K+VV +N MI  Y 
Sbjct: 54  LNKLHSKIVINEHLRIDPTLAIKLMRAYSAQGETSVARYIFDRSLEKNVVFFNVMIRSYV 113

Query: 250 QHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKP 309
            +    +AL +F  M      PD  TF  +L AC+    + +G+Q  D++V   G+    
Sbjct: 114 NNNLYVEALSIFQVMLSCAFNPDHYTFPCVLKACSGLDNLRVGLQVHDAIVK-VGLDTNL 172

Query: 310 DHYTCMVDLLGRAGKLVEAVDLIKKMPFK------------PQPAIFGTLLSACRVHKRL 357
                +V + G+ G L EA  ++ +MP++             Q   F   L  C+    L
Sbjct: 173 FIGNALVAMYGKCGCLREARKVLDQMPYRDVVSWNSMVAGYAQSGQFDDALEICKEMDSL 232

Query: 358 DLAEFAAMNLFNLNPANAAGCYVQLANI 385
           +L   A   + +L+P     CY  L N+
Sbjct: 233 NLNHDAG-TMASLSP---VVCYTSLENV 256


>gi|125584568|gb|EAZ25232.1| hypothetical protein OsJ_09035 [Oryza sativa Japonica Group]
          Length = 674

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 205/450 (45%), Positives = 297/450 (66%), Gaps = 7/450 (1%)

Query: 98  EKNSVSWSAMISGYIECGQ--LDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAED 155
           E+N+   + M+  Y + G   L+ A ++F     + VV+W +MI+ Y + G    S    
Sbjct: 230 ERNAGVVNTMLDSYAKGGSRDLEVARKVFDTME-RDVVSWNSMIALYAQNGM---SAEAI 285

Query: 156 GLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLIS 215
           GL    + +G GI+ NA +LS+VLL C+H  ++Q GK++H  V +  L ++    T ++ 
Sbjct: 286 GLYSKMLNVGGGIKCNAVALSAVLLACAHAGAIQTGKRIHNQVVRMGLEENVYVGTSIVD 345

Query: 216 MYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSIT 275
           MY KCG +E A + F +I+ K++++W+AMI+GY  HG+G++AL +F +MK  G++P+ IT
Sbjct: 346 MYSKCGRVEMASRAFRKIKEKNILSWSAMITGYGMHGRGQEALEIFTEMKRSGLRPNYIT 405

Query: 276 FVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335
           F+++L AC+HAGL+D G  ++++M  ++GI A  +HY CMVDLLGRAG L EA  LIK+M
Sbjct: 406 FISVLAACSHAGLLDEGRYWYNAMKQEFGIEAGVEHYGCMVDLLGRAGCLDEAYSLIKEM 465

Query: 336 PFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDV 395
             KP  AI+G LLSACR+HK ++LAE +   LF L+ +N +G YV L+NIYA  + W DV
Sbjct: 466 KVKPDAAIWGALLSACRIHKNVELAEMSVKRLFELDASN-SGYYVLLSNIYAEARMWKDV 524

Query: 396 ARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYV 455
            RIRL +K   + K PGYS  E+   ++ F  GD+ HP+ + I+  L++L +RM+ AGYV
Sbjct: 525 ERIRLLVKTRRIEKPPGYSSFELKGKIYLFYVGDKSHPQHIEIYSYLEKLLERMQEAGYV 584

Query: 456 PDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYI 515
           P+    LH + EE KE  L  HSEKLA+AF L+     + I + KNLRVC DCH A K+I
Sbjct: 585 PNTGSVLHDLDEEEKESALRIHSEKLAVAFALMNSVPRSVIHIIKNLRVCSDCHTAMKFI 644

Query: 516 SAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           + I +REII+RD  RFHHFKDG CSC DYW
Sbjct: 645 TKITEREIIIRDLQRFHHFKDGLCSCRDYW 674



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 64/207 (30%), Positives = 105/207 (50%), Gaps = 22/207 (10%)

Query: 145 FGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQV---------H 195
           FGYV N+     L+L R MI       AS  +SV+   + L +     +V         H
Sbjct: 169 FGYVRNNLVYHSLELFRAMI-------ASDSASVVDEAAALVAFSASARVPDRGVTASLH 221

Query: 196 QLVFKSPLCKDTTALTPLISMYCKCG--DLEDACKLFLEIQRKDVVTWNAMISGYAQHGK 253
            L+ K    ++   +  ++  Y K G  DLE A K+F  ++R DVV+WN+MI+ YAQ+G 
Sbjct: 222 ALIAKIGFERNAGVVNTMLDSYAKGGSRDLEVARKVFDTMER-DVVSWNSMIALYAQNGM 280

Query: 254 GEKALRLFDKMKD--EGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDH 311
             +A+ L+ KM +   G+K +++   A+LLAC HAG +  G +  + +V   G+      
Sbjct: 281 SAEAIGLYSKMLNVGGGIKCNAVALSAVLLACAHAGAIQTGKRIHNQVVR-MGLEENVYV 339

Query: 312 YTCMVDLLGRAGKLVEAVDLIKKMPFK 338
            T +VD+  + G++  A    +K+  K
Sbjct: 340 GTSIVDMYSKCGRVEMASRAFRKIKEK 366



 Score = 47.4 bits (111), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 66/274 (24%), Positives = 108/274 (39%), Gaps = 52/274 (18%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQ--PDVVSYNIMLSCILLNSDDVVAA--- 58
           +  V+WNS++A +A Q G   +A  L+ K+      +    + LS +LL      A    
Sbjct: 263 RDVVSWNSMIALYA-QNGMSAEAIGLYSKMLNVGGGIKCNAVALSAVLLACAHAGAIQTG 321

Query: 59  ---FDFFQRLPIKDTASWNTMISGFVQK-KNMAKARDLFLAMPEKNSVSWSAMISGYIEC 114
               +   R+ +++     T I     K   +  A   F  + EKN +SWSAMI+GY   
Sbjct: 322 KRIHNQVVRMGLEENVYVGTSIVDMYSKCGRVEMASRAFRKIKEKNILSWSAMITGYGMH 381

Query: 115 GQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASS 174
           G+  +A+E+F                                      M   G+RPN  +
Sbjct: 382 GRGQEALEIFT------------------------------------EMKRSGLRPNYIT 405

Query: 175 LSSVLLGCSHLSSLQLGKQVHQLVFKS-PLCKDTTALTPLISMYCKCGDLEDACKLFLEI 233
             SVL  CSH   L  G+  +  + +   +         ++ +  + G L++A  L  E+
Sbjct: 406 FISVLAACSHAGLLDEGRYWYNAMKQEFGIEAGVEHYGCMVDLLGRAGCLDEAYSLIKEM 465

Query: 234 QRK-DVVTWNAMISGYAQHGKGEKA----LRLFD 262
           + K D   W A++S    H   E A     RLF+
Sbjct: 466 KVKPDAAIWGALLSACRIHKNVELAEMSVKRLFE 499


>gi|224120376|ref|XP_002318314.1| predicted protein [Populus trichocarpa]
 gi|222858987|gb|EEE96534.1| predicted protein [Populus trichocarpa]
          Length = 539

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 200/492 (40%), Positives = 314/492 (63%), Gaps = 24/492 (4%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKS-- 131
           N ++  + +   + +A  +F  + EK+ VSW+AM++GY + G+ + A+ LF+    ++  
Sbjct: 52  NALVDMYAKCGMVDEASKVFDRIKEKDVVSWNAMVNGYSQIGRFEDALGLFEKMREENIE 111

Query: 132 --VVAWTAMISGYMKFGY----------VENSWAEDGLKLLRMMI---GLGIRPNASSLS 176
             VV+W+A+I+ + + G           +++  A D L+L   M    GL ++PN  ++S
Sbjct: 112 LNVVSWSAVIAAFAQRGLGCETLDVFREMQHGEANDALELFSWMFKQDGL-VKPNCFTIS 170

Query: 177 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTAL---TPLISMYCKCGDLEDACKLFLEI 233
             L+ C+ L++L+LG+Q+H  + ++    D+  L     LI MY K GD++ A  +F  +
Sbjct: 171 CALIACARLAALRLGRQIHAYILRNHF--DSAFLYVANCLIDMYAKSGDIDVARFVFDNL 228

Query: 234 QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGI 293
           ++K+ V+W ++++GY  HG+G++AL +FD+M+  G++PD +T + +L AC+H+G++D GI
Sbjct: 229 KQKNFVSWTSLMTGYGMHGRGKEALEVFDEMRRVGLQPDGVTLLVVLYACSHSGMIDQGI 288

Query: 294 QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRV 353
           ++F+SM  ++G+    +HY CMVDLLGRAG+L EA++LI+ M  +P   ++  LLS CR+
Sbjct: 289 EFFNSMSKEFGVIPGQEHYACMVDLLGRAGRLNEAMELIEGMQMEPSSIVWVALLSGCRI 348

Query: 354 HKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGY 413
           H  ++L E AA  L  LN  N  G Y  L+NIYA  ++W DVAR+R  MK + + K PG 
Sbjct: 349 HANVELGEHAAKQLLELNSEND-GSYTLLSNIYANARRWKDVARVRSLMKNSGIRKRPGC 407

Query: 414 SWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQL 473
           SW++       F   D+ HP+   I+E L+ L +R+K+ GYVP+  FALH V +E K  L
Sbjct: 408 SWVQGKKGTTTFYVADKTHPQSKQIYEILRSLTQRIKVLGYVPETSFALHDVDDEEKVDL 467

Query: 474 LLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHH 533
           L  HSEKLA+A+G++    G PIR+ KNLRVCGDCH A  YIS I   EII+RD++RFHH
Sbjct: 468 LFEHSEKLALAYGILISAPGAPIRITKNLRVCGDCHNAITYISMIIDHEIILRDSSRFHH 527

Query: 534 FKDGTCSCGDYW 545
           FK G+CSC  YW
Sbjct: 528 FKKGSCSCSGYW 539



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 47/123 (38%), Positives = 79/123 (64%)

Query: 166 LGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLED 225
           + +RP+  SL +VL  C+ + +   GK VH +  +S   +D      L+ MY KCG +++
Sbjct: 7   IDMRPDVVSLVNVLPACASMGAWLHGKAVHGIAVRSGSFEDLFVGNALVDMYAKCGMVDE 66

Query: 226 ACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNH 285
           A K+F  I+ KDVV+WNAM++GY+Q G+ E AL LF+KM++E ++ + +++ A++ A   
Sbjct: 67  ASKVFDRIKEKDVVSWNAMVNGYSQIGRFEDALGLFEKMREENIELNVVSWSAVIAAFAQ 126

Query: 286 AGL 288
            GL
Sbjct: 127 RGL 129


>gi|296083564|emb|CBI23556.3| unnamed protein product [Vitis vinifera]
          Length = 827

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 205/545 (37%), Positives = 325/545 (59%), Gaps = 38/545 (6%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G + D++++F+++P+ +V+S+  +++  + + +    A + F +           MISG 
Sbjct: 301 GSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCK-----------MISGH 349

Query: 81  VQKKNMAKARDLF--------------------LAMPEKNSVSWSAMISGYIECGQLDKA 120
           ++  + + +  L                     L +   N V  +++IS Y   G+++ A
Sbjct: 350 IRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVG-NSLISMYARSGRMEDA 408

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLL 180
            + F +   K++V++ A++ GY K     N  +E+   L   +   GI  +A + +S+L 
Sbjct: 409 RKAFDILFEKNLVSYNAIVDGYAK-----NLKSEEAFLLFNEIADTGIGISAFTFASLLS 463

Query: 181 GCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVT 240
           G + + ++  G+Q+H  + K     +      LISMY +CG++E A ++F E++ ++V++
Sbjct: 464 GAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVIS 523

Query: 241 WNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV 300
           W +MI+G+A+HG   +AL +F KM + G KP+ IT+VA+L AC+H G++  G ++F+SM 
Sbjct: 524 WTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMY 583

Query: 301 NDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLA 360
            ++GI  + +HY CMVDLLGR+G LVEA++ I  MP      ++ TLL ACRVH   +L 
Sbjct: 584 KEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELG 643

Query: 361 EFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGT 420
             AA  +    P + A  Y+ L+N++A+  +W DV +IR SMKE N++K  G SWIEV  
Sbjct: 644 RHAAEMILEQEPDDPAA-YILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWIEVEN 702

Query: 421 VVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEK 480
            VH F  G+  HP+   I+++L +L  ++K  GY+PD +F LH + EE KEQ L  HSEK
Sbjct: 703 RVHRFHVGETSHPQAWQIYQELDQLASKIKEMGYIPDTDFVLHDIEEEQKEQFLFQHSEK 762

Query: 481 LAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCS 540
           +A+AFGLI      PIR+FKNLRVCGDCH A KYIS    REI+VRD+ RFHH K+G CS
Sbjct: 763 IAVAFGLISTSQSKPIRIFKNLRVCGDCHTAIKYISMATGREIVVRDSNRFHHIKNGVCS 822

Query: 541 CGDYW 545
           C DYW
Sbjct: 823 CNDYW 827



 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 92/333 (27%), Positives = 168/333 (50%), Gaps = 21/333 (6%)

Query: 16  FAKQRGKLKDAQELFDKIPQPDVVSYNIMLS--CILLNSDDVVAAF-DFFQRLPIKDTAS 72
           F K  G L  A ++FDK+P+ ++V++ +M++    L  + D +  F D      + D  +
Sbjct: 192 FVKGSGDLGSAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFT 251

Query: 73  WNTMIS-----GFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIEC---GQLDKAVELF 124
           +++++S     G +       +R + L +     V  S ++  Y +C   G +D + ++F
Sbjct: 252 YSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCS-LVDMYAKCAADGSVDDSRKVF 310

Query: 125 KVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSH 184
           +  P  +V++WTA+I+ Y++ G  +    ++ ++L   MI   IRPN  S SSVL  C +
Sbjct: 311 EQMPEHNVMSWTAIITAYVQSGECD----KEAIELFCKMISGHIRPNHFSFSSVLKACGN 366

Query: 185 LSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAM 244
           LS    G+QV+    K  +         LISMY + G +EDA K F  +  K++V++NA+
Sbjct: 367 LSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAI 426

Query: 245 ISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYG 304
           + GYA++ K E+A  LF+++ D G+   + TF +LL      G +  G Q    ++    
Sbjct: 427 VDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKG-- 484

Query: 305 IAAKPDHYTC--MVDLLGRAGKLVEAVDLIKKM 335
              K +   C  ++ +  R G +  A  +  +M
Sbjct: 485 -GYKSNQCICNALISMYSRCGNIEAAFQVFNEM 516



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 92/327 (28%), Positives = 152/327 (46%), Gaps = 46/327 (14%)

Query: 21  GKLKDAQELFDKIPQ----PDVVSYNIML-SCILLNSDDVVAAFDFFQRLPIKDTASWNT 75
           G+L  A    D + Q    PD+ +Y+I+L SCI          F  FQ            
Sbjct: 23  GRLHHAFSTLDLMTQQNAPPDLTTYSILLKSCI---------RFRNFQ------------ 61

Query: 76  MISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFK-VAPVKSVVA 134
            +   V +K M    +L       +SV  + +IS Y +CG  + A  +F+ +   + +V+
Sbjct: 62  -LGKLVHRKLMQSGLEL-------DSVVLNTLISLYSKCGDTETARLIFEGMGNKRDLVS 113

Query: 135 WTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQV 194
           W+AM+S +       NS     +     M+ LG  PN    ++V+  CS+ +   +G+ +
Sbjct: 114 WSAMVSCF-----ANNSMEWQAIWTFLDMLELGFYPNEYCFAAVIRACSNANYAWVGEII 168

Query: 195 HQLVFKSP-LCKDTTALTPLISMYCK-CGDLEDACKLFLEIQRKDVVTWNAMISGYAQHG 252
           +  V K+  L  D      LI M+ K  GDL  A K+F ++  +++VTW  MI+ +AQ G
Sbjct: 169 YGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDKMPERNLVTWTLMITRFAQLG 228

Query: 253 KGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY 312
               A+ LF  M+  G  PD  T+ ++L AC   GL+ LG Q   S V   G+A      
Sbjct: 229 CARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQ-LHSRVIRLGLALDVCVG 287

Query: 313 TCMVDLLGRA---GKLVEAVDLIKKMP 336
             +VD+  +    G + ++  + ++MP
Sbjct: 288 CSLVDMYAKCAADGSVDDSRKVFEQMP 314


>gi|359497798|ref|XP_003635646.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 809

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 205/545 (37%), Positives = 325/545 (59%), Gaps = 38/545 (6%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G + D++++F+++P+ +V+S+  +++  + + +    A + F +           MISG 
Sbjct: 283 GSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCK-----------MISGH 331

Query: 81  VQKKNMAKARDLF--------------------LAMPEKNSVSWSAMISGYIECGQLDKA 120
           ++  + + +  L                     L +   N V  +++IS Y   G+++ A
Sbjct: 332 IRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVG-NSLISMYARSGRMEDA 390

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLL 180
            + F +   K++V++ A++ GY K     N  +E+   L   +   GI  +A + +S+L 
Sbjct: 391 RKAFDILFEKNLVSYNAIVDGYAK-----NLKSEEAFLLFNEIADTGIGISAFTFASLLS 445

Query: 181 GCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVT 240
           G + + ++  G+Q+H  + K     +      LISMY +CG++E A ++F E++ ++V++
Sbjct: 446 GAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVIS 505

Query: 241 WNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV 300
           W +MI+G+A+HG   +AL +F KM + G KP+ IT+VA+L AC+H G++  G ++F+SM 
Sbjct: 506 WTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMY 565

Query: 301 NDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLA 360
            ++GI  + +HY CMVDLLGR+G LVEA++ I  MP      ++ TLL ACRVH   +L 
Sbjct: 566 KEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELG 625

Query: 361 EFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGT 420
             AA  +    P + A  Y+ L+N++A+  +W DV +IR SMKE N++K  G SWIEV  
Sbjct: 626 RHAAEMILEQEPDDPAA-YILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWIEVEN 684

Query: 421 VVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEK 480
            VH F  G+  HP+   I+++L +L  ++K  GY+PD +F LH + EE KEQ L  HSEK
Sbjct: 685 RVHRFHVGETSHPQAWQIYQELDQLASKIKEMGYIPDTDFVLHDIEEEQKEQFLFQHSEK 744

Query: 481 LAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCS 540
           +A+AFGLI      PIR+FKNLRVCGDCH A KYIS    REI+VRD+ RFHH K+G CS
Sbjct: 745 IAVAFGLISTSQSKPIRIFKNLRVCGDCHTAIKYISMATGREIVVRDSNRFHHIKNGVCS 804

Query: 541 CGDYW 545
           C DYW
Sbjct: 805 CNDYW 809



 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 92/333 (27%), Positives = 168/333 (50%), Gaps = 21/333 (6%)

Query: 16  FAKQRGKLKDAQELFDKIPQPDVVSYNIMLS--CILLNSDDVVAAF-DFFQRLPIKDTAS 72
           F K  G L  A ++FDK+P+ ++V++ +M++    L  + D +  F D      + D  +
Sbjct: 174 FVKGSGDLGSAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFT 233

Query: 73  WNTMIS-----GFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIEC---GQLDKAVELF 124
           +++++S     G +       +R + L +     V  S ++  Y +C   G +D + ++F
Sbjct: 234 YSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCS-LVDMYAKCAADGSVDDSRKVF 292

Query: 125 KVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSH 184
           +  P  +V++WTA+I+ Y++ G  +    ++ ++L   MI   IRPN  S SSVL  C +
Sbjct: 293 EQMPEHNVMSWTAIITAYVQSGECD----KEAIELFCKMISGHIRPNHFSFSSVLKACGN 348

Query: 185 LSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAM 244
           LS    G+QV+    K  +         LISMY + G +EDA K F  +  K++V++NA+
Sbjct: 349 LSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAI 408

Query: 245 ISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYG 304
           + GYA++ K E+A  LF+++ D G+   + TF +LL      G +  G Q    ++    
Sbjct: 409 VDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKG-- 466

Query: 305 IAAKPDHYTC--MVDLLGRAGKLVEAVDLIKKM 335
              K +   C  ++ +  R G +  A  +  +M
Sbjct: 467 -GYKSNQCICNALISMYSRCGNIEAAFQVFNEM 498



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 92/327 (28%), Positives = 152/327 (46%), Gaps = 46/327 (14%)

Query: 21  GKLKDAQELFDKIPQ----PDVVSYNIML-SCILLNSDDVVAAFDFFQRLPIKDTASWNT 75
           G+L  A    D + Q    PD+ +Y+I+L SCI          F  FQ            
Sbjct: 5   GRLHHAFSTLDLMTQQNAPPDLTTYSILLKSCI---------RFRNFQ------------ 43

Query: 76  MISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFK-VAPVKSVVA 134
            +   V +K M    +L       +SV  + +IS Y +CG  + A  +F+ +   + +V+
Sbjct: 44  -LGKLVHRKLMQSGLEL-------DSVVLNTLISLYSKCGDTETARLIFEGMGNKRDLVS 95

Query: 135 WTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQV 194
           W+AM+S +       NS     +     M+ LG  PN    ++V+  CS+ +   +G+ +
Sbjct: 96  WSAMVSCF-----ANNSMEWQAIWTFLDMLELGFYPNEYCFAAVIRACSNANYAWVGEII 150

Query: 195 HQLVFKSP-LCKDTTALTPLISMYCK-CGDLEDACKLFLEIQRKDVVTWNAMISGYAQHG 252
           +  V K+  L  D      LI M+ K  GDL  A K+F ++  +++VTW  MI+ +AQ G
Sbjct: 151 YGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDKMPERNLVTWTLMITRFAQLG 210

Query: 253 KGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY 312
               A+ LF  M+  G  PD  T+ ++L AC   GL+ LG Q   S V   G+A      
Sbjct: 211 CARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQ-LHSRVIRLGLALDVCVG 269

Query: 313 TCMVDLLGRA---GKLVEAVDLIKKMP 336
             +VD+  +    G + ++  + ++MP
Sbjct: 270 CSLVDMYAKCAADGSVDDSRKVFEQMP 296


>gi|297851096|ref|XP_002893429.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297339271|gb|EFH69688.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 790

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 202/473 (42%), Positives = 299/473 (63%), Gaps = 7/473 (1%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVV 133
           N++++ + +     +AR +F  MP K+ VSW+A++SGY+  G + +A  +FK    K+++
Sbjct: 324 NSLVTLYYKCGKFNEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNIL 383

Query: 134 AWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ 193
           +W  MISG       EN + E+GLKL   M   G  P   + S  +  C+ L +   G+Q
Sbjct: 384 SWMIMISGL-----AENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQ 438

Query: 194 VHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGK 253
            H  + K       +A   LI+MY KCG +E+A ++F  +   D V+WNA+I+   QHG 
Sbjct: 439 FHAQLVKIGFDSSLSAGNALITMYAKCGVVEEAQQVFRTMPCLDSVSWNALIAALGQHGH 498

Query: 254 GEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYT 313
           G +A+ ++++M  +G++PD ITF+ +L AC+HAGLVD G +YF+SM   Y I    DHY 
Sbjct: 499 GVEAVDVYEEMLKKGIRPDRITFLTVLTACSHAGLVDQGRKYFNSMETVYRIPPGADHYA 558

Query: 314 CMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPA 373
            ++DLL R+GK  EA  +I+ +PFKP   I+  LLS CRVH  ++L   AA  LF L P 
Sbjct: 559 RLIDLLCRSGKFSEAESIIESLPFKPTAEIWEALLSGCRVHGNMELGIIAADKLFGLIPE 618

Query: 374 NAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHP 433
           +  G Y+ L+N+YAA  +W++VAR+R  M++  V K    SWIE+ T VH F   D  HP
Sbjct: 619 H-DGTYMLLSNMYAATGQWEEVARVRKLMRDRGVKKEVACSWIEMETQVHTFLVDDTSHP 677

Query: 434 ELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEV-KEQLLLFHSEKLAIAFGLIKVPL 492
           E  ++++ L++L K M+  GYVPD  F LH V  +  KE +L  HSEK+A+AFGL+K+P 
Sbjct: 678 EAEAVYKYLQDLGKEMRRLGYVPDTSFVLHDVESDGHKEDMLTTHSEKIAVAFGLMKLPP 737

Query: 493 GTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           GT IR+FKNLR CGDCH   +++S + +R+II+RD  RFHHF++G CSCG++W
Sbjct: 738 GTTIRIFKNLRTCGDCHNFFRFLSKVVQRDIILRDRKRFHHFRNGECSCGNFW 790



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 118/469 (25%), Positives = 189/469 (40%), Gaps = 143/469 (30%)

Query: 22  KLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPI--KDTASWNTMISG 79
           +L  A++LFD+I +PD ++   M+S     S D+  A   F+  P+  +DT  +N MI+G
Sbjct: 64  ELDYARQLFDEISEPDKIARTTMVSG-YCASGDIALARSVFEETPVSMRDTVMYNAMITG 122

Query: 80  FVQKKNMAKARDLFLAMP------------------------EKNSVSW----------- 104
           F    +   A +LF  M                         EK  V +           
Sbjct: 123 FSHNNDGYSAINLFCKMKHEGFKPDDFTYASVLAGLALVVDDEKQCVQFHAAALKSGAGY 182

Query: 105 -----SAMISGYIECGQ----LDKAVELFKVAPVKSVVAWTAMISGYMK----------- 144
                +A++S Y  C      L  A ++F   P K   +WT M++GY+K           
Sbjct: 183 VTSVSNALVSVYSRCASSPSLLHSARKVFDDIPEKDERSWTTMMTGYVKNGCFDLGKELL 242

Query: 145 ----------------FGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSL 188
                            GYV     ++ L+++R M+  GI  +  +  SV+  C++   L
Sbjct: 243 KGMDENMKLVAYNAMISGYVNCGLYQEALEMVRRMVSSGIELDEFTYPSVIRACANARLL 302

Query: 189 QLGKQVH------------------------------QLVFKSPLCKDTTALTPLISMYC 218
           QLGKQVH                              + +F+    KD  +   L+S Y 
Sbjct: 303 QLGKQVHAYVLRREDFSFHFDNSLVTLYYKCGKFNEARAIFEKMPAKDLVSWNALLSGYV 362

Query: 219 KCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVA 278
             G + +A  +F E++ K++++W  MISG A++G GE+ L+LF  MK EG +P    F  
Sbjct: 363 SSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSG 422

Query: 279 LLLACN-----------HAGLVDLGIQYFDS----------MVNDYGIAAKPDH------ 311
            + +C            HA LV +G   FDS          M    G+  +         
Sbjct: 423 AIKSCAVLGAYCNGQQFHAQLVKIG---FDSSLSAGNALITMYAKCGVVEEAQQVFRTMP 479

Query: 312 ------YTCMVDLLGRAGKLVEAVDLIKKM---PFKPQPAIFGTLLSAC 351
                 +  ++  LG+ G  VEAVD+ ++M     +P    F T+L+AC
Sbjct: 480 CLDSVSWNALIAALGQHGHGVEAVDVYEEMLKKGIRPDRITFLTVLTAC 528



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 79/304 (25%), Positives = 132/304 (43%), Gaps = 46/304 (15%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPV--KS 131
           N +I  + +   +  AR LF  + E + ++ + M+SGY   G +  A  +F+  PV  + 
Sbjct: 53  NRLIDVYCKSSELDYARQLFDEISEPDKIARTTMVSGYCASGDIALARSVFEETPVSMRD 112

Query: 132 VVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSH-LSSLQL 190
            V + AMI+     G+  N+     + L   M   G +P+  + +SVL G +  +   + 
Sbjct: 113 TVMYNAMIT-----GFSHNNDGYSAINLFCKMKHEGFKPDDFTYASVLAGLALVVDDEKQ 167

Query: 191 GKQVHQLVFKSPLCKDTTALTPLISMYCKCGD----LEDACKLFLEIQRKDVVTW----- 241
             Q H    KS     T+    L+S+Y +C      L  A K+F +I  KD  +W     
Sbjct: 168 CVQFHAAALKSGAGYVTSVSNALVSVYSRCASSPSLLHSARKVFDDIPEKDERSWTTMMT 227

Query: 242 ---------------------------NAMISGYAQHGKGEKALRLFDKMKDEGMKPDSI 274
                                      NAMISGY   G  ++AL +  +M   G++ D  
Sbjct: 228 GYVKNGCFDLGKELLKGMDENMKLVAYNAMISGYVNCGLYQEALEMVRRMVSSGIELDEF 287

Query: 275 TFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKK 334
           T+ +++ AC +A L+ LG Q    ++     +   D+   +V L  + GK  EA  + +K
Sbjct: 288 TYPSVIRACANARLLQLGKQVHAYVLRREDFSFHFDN--SLVTLYYKCGKFNEARAIFEK 345

Query: 335 MPFK 338
           MP K
Sbjct: 346 MPAK 349



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 40/120 (33%), Positives = 65/120 (54%), Gaps = 6/120 (5%)

Query: 163 MIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGD 222
           +I  G +P+A  L+ ++      S L   +Q+   + +     D  A T ++S YC  GD
Sbjct: 40  IITFGFQPHAHILNRLIDVYCKSSELDYARQLFDEISEP----DKIARTTMVSGYCASGD 95

Query: 223 LEDACKLFLE--IQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 280
           +  A  +F E  +  +D V +NAMI+G++ +  G  A+ LF KMK EG KPD  T+ ++L
Sbjct: 96  IALARSVFEETPVSMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDDFTYASVL 155


>gi|296090723|emb|CBI41122.3| unnamed protein product [Vitis vinifera]
          Length = 634

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 205/545 (37%), Positives = 324/545 (59%), Gaps = 38/545 (6%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G + D++++F+++P+ +V+S+  +++    + +    A + F +           MISG 
Sbjct: 108 GSVDDSRKVFEQMPEHNVMSWTAIITAYAQSGECDKEAIELFCK-----------MISGH 156

Query: 81  VQKKNMAKARDLF--------------------LAMPEKNSVSWSAMISGYIECGQLDKA 120
           ++  + + +  L                     L +   N V  +++IS Y   G+++ A
Sbjct: 157 IRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVG-NSLISMYARSGRMEDA 215

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLL 180
            + F +   K++V++ A++ GY K     N  +E+   L   +   GI  +A + +S+L 
Sbjct: 216 RKAFDILFEKNLVSYNAIVDGYAK-----NLKSEEAFLLFNEIADTGIGISAFTFASLLS 270

Query: 181 GCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVT 240
           G + + ++  G+Q+H  + K     +      LISMY +CG++E A ++F E++ ++V++
Sbjct: 271 GAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVIS 330

Query: 241 WNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV 300
           W +MI+G+A+HG   +AL +F KM + G KP+ IT+VA+L AC+H G++  G ++F+SM 
Sbjct: 331 WTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMY 390

Query: 301 NDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLA 360
            ++GI  + +HY CMVDLLGR+G LVEA++ I  MP      ++ TLL ACRVH   +L 
Sbjct: 391 KEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELG 450

Query: 361 EFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGT 420
             AA  +    P + A  Y+ L+N++A+  +W DV +IR SMKE N++K  G SWIEV  
Sbjct: 451 RHAAEMILEQEPDDPAA-YILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWIEVEN 509

Query: 421 VVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEK 480
            VH F  G+  HP+   I+++L +L  ++K  GY+PD +F LH + EE KEQ L  HSEK
Sbjct: 510 RVHRFHVGETSHPQAWQIYQELDQLASKIKEMGYIPDTDFVLHDIEEEQKEQFLFQHSEK 569

Query: 481 LAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCS 540
           +A+AFGLI      PIR+FKNLRVCGDCH A KYIS    REI+VRD+ RFHH K+G CS
Sbjct: 570 IAVAFGLISTSQSKPIRIFKNLRVCGDCHTAIKYISMATGREIVVRDSNRFHHIKNGVCS 629

Query: 541 CGDYW 545
           C DYW
Sbjct: 630 CNDYW 634



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 88/323 (27%), Positives = 163/323 (50%), Gaps = 21/323 (6%)

Query: 26  AQELFDKIPQPDVVSYNIMLS--CILLNSDDVVAAF-DFFQRLPIKDTASWNTMIS---- 78
           A ++FDK+P+ ++V++ +M++    L  + D +  F D      + D  ++++++S    
Sbjct: 9   AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 68

Query: 79  -GFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIEC---GQLDKAVELFKVAPVKSVVA 134
            G +       +R + L +     V  S ++  Y +C   G +D + ++F+  P  +V++
Sbjct: 69  LGLLALGKQLHSRVIRLGLALDVCVGCS-LVDMYAKCAADGSVDDSRKVFEQMPEHNVMS 127

Query: 135 WTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQV 194
           WTA+I+ Y + G  +    ++ ++L   MI   IRPN  S SSVL  C +LS    G+QV
Sbjct: 128 WTAIITAYAQSGECD----KEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQV 183

Query: 195 HQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKG 254
           +    K  +         LISMY + G +EDA K F  +  K++V++NA++ GYA++ K 
Sbjct: 184 YSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKS 243

Query: 255 EKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTC 314
           E+A  LF+++ D G+   + TF +LL      G +  G Q    ++       K +   C
Sbjct: 244 EEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKG---GYKSNQCIC 300

Query: 315 --MVDLLGRAGKLVEAVDLIKKM 335
             ++ +  R G +  A  +  +M
Sbjct: 301 NALISMYSRCGNIEAAFQVFNEM 323



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 73/163 (44%), Gaps = 37/163 (22%)

Query: 226 ACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNH 285
           A K+F ++  +++VTW  MI+ +AQ G    A+ LF  M+  G  PD  T+ ++L AC  
Sbjct: 9   AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 68

Query: 286 AGLVDLGIQYFD---------------SMVNDYGIAAK--------------PDH----Y 312
            GL+ LG Q                  S+V+ Y   A               P+H    +
Sbjct: 69  LGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSW 128

Query: 313 TCMVDLLGRAGKL-VEAVDLIKKM---PFKPQPAIFGTLLSAC 351
           T ++    ++G+   EA++L  KM     +P    F ++L AC
Sbjct: 129 TAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKAC 171


>gi|359497772|ref|XP_003635637.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 629

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 205/545 (37%), Positives = 324/545 (59%), Gaps = 38/545 (6%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G + D++++F+++P+ +V+S+  +++    + +    A + F +           MISG 
Sbjct: 103 GSVDDSRKVFEQMPEHNVMSWTAIITAYAQSGECDKEAIELFCK-----------MISGH 151

Query: 81  VQKKNMAKARDLF--------------------LAMPEKNSVSWSAMISGYIECGQLDKA 120
           ++  + + +  L                     L +   N V  +++IS Y   G+++ A
Sbjct: 152 IRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVG-NSLISMYARSGRMEDA 210

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLL 180
            + F +   K++V++ A++ GY K     N  +E+   L   +   GI  +A + +S+L 
Sbjct: 211 RKAFDILFEKNLVSYNAIVDGYAK-----NLKSEEAFLLFNEIADTGIGISAFTFASLLS 265

Query: 181 GCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVT 240
           G + + ++  G+Q+H  + K     +      LISMY +CG++E A ++F E++ ++V++
Sbjct: 266 GAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVIS 325

Query: 241 WNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV 300
           W +MI+G+A+HG   +AL +F KM + G KP+ IT+VA+L AC+H G++  G ++F+SM 
Sbjct: 326 WTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMY 385

Query: 301 NDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLA 360
            ++GI  + +HY CMVDLLGR+G LVEA++ I  MP      ++ TLL ACRVH   +L 
Sbjct: 386 KEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELG 445

Query: 361 EFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGT 420
             AA  +    P + A  Y+ L+N++A+  +W DV +IR SMKE N++K  G SWIEV  
Sbjct: 446 RHAAEMILEQEPDDPAA-YILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWIEVEN 504

Query: 421 VVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEK 480
            VH F  G+  HP+   I+++L +L  ++K  GY+PD +F LH + EE KEQ L  HSEK
Sbjct: 505 RVHRFHVGETSHPQAWQIYQELDQLASKIKEMGYIPDTDFVLHDIEEEQKEQFLFQHSEK 564

Query: 481 LAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCS 540
           +A+AFGLI      PIR+FKNLRVCGDCH A KYIS    REI+VRD+ RFHH K+G CS
Sbjct: 565 IAVAFGLISTSQSKPIRIFKNLRVCGDCHTAIKYISMATGREIVVRDSNRFHHIKNGVCS 624

Query: 541 CGDYW 545
           C DYW
Sbjct: 625 CNDYW 629



 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 88/323 (27%), Positives = 163/323 (50%), Gaps = 21/323 (6%)

Query: 26  AQELFDKIPQPDVVSYNIMLS--CILLNSDDVVAAF-DFFQRLPIKDTASWNTMIS---- 78
           A ++FDK+P+ ++V++ +M++    L  + D +  F D      + D  ++++++S    
Sbjct: 4   AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 63

Query: 79  -GFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIEC---GQLDKAVELFKVAPVKSVVA 134
            G +       +R + L +     V  S ++  Y +C   G +D + ++F+  P  +V++
Sbjct: 64  LGLLALGKQLHSRVIRLGLALDVCVGCS-LVDMYAKCAADGSVDDSRKVFEQMPEHNVMS 122

Query: 135 WTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQV 194
           WTA+I+ Y + G  +    ++ ++L   MI   IRPN  S SSVL  C +LS    G+QV
Sbjct: 123 WTAIITAYAQSGECD----KEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQV 178

Query: 195 HQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKG 254
           +    K  +         LISMY + G +EDA K F  +  K++V++NA++ GYA++ K 
Sbjct: 179 YSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKS 238

Query: 255 EKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTC 314
           E+A  LF+++ D G+   + TF +LL      G +  G Q    ++       K +   C
Sbjct: 239 EEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKG---GYKSNQCIC 295

Query: 315 --MVDLLGRAGKLVEAVDLIKKM 335
             ++ +  R G +  A  +  +M
Sbjct: 296 NALISMYSRCGNIEAAFQVFNEM 318



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 73/163 (44%), Gaps = 37/163 (22%)

Query: 226 ACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNH 285
           A K+F ++  +++VTW  MI+ +AQ G    A+ LF  M+  G  PD  T+ ++L AC  
Sbjct: 4   AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 63

Query: 286 AGLVDLGIQYFD---------------SMVNDYGIAAK--------------PDH----Y 312
            GL+ LG Q                  S+V+ Y   A               P+H    +
Sbjct: 64  LGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSW 123

Query: 313 TCMVDLLGRAGKL-VEAVDLIKKM---PFKPQPAIFGTLLSAC 351
           T ++    ++G+   EA++L  KM     +P    F ++L AC
Sbjct: 124 TAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKAC 166


>gi|224060327|ref|XP_002300144.1| predicted protein [Populus trichocarpa]
 gi|222847402|gb|EEE84949.1| predicted protein [Populus trichocarpa]
          Length = 666

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 218/555 (39%), Positives = 334/555 (60%), Gaps = 27/555 (4%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK- 68
           +S L     + GKL +A+ LFD+IP+ ++V++  +++  + N DD   A   F+    + 
Sbjct: 120 SSALIDMYSKCGKLSNARVLFDEIPRRNIVTWTSLITGYVQN-DDAHEALMVFKEFLFEK 178

Query: 69  ------------DTASWNTMISGFVQKKNMAKARDLF-----LAMPEKNSVSWSAMISGY 111
                       D+ +  +++S   +  N A +  +      + + +   V  + ++  Y
Sbjct: 179 SEGNGEEVGTSVDSVAMISVLSACSRVSNKAVSEGVHGVAIKVGLDKVMGVE-NTLLDAY 237

Query: 112 IECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGI-RP 170
            +CG++  + ++F     K VV+W +MI+ Y      +N  + D  ++   M+  G  + 
Sbjct: 238 AKCGEVSLSRKVFDDMAEKDVVSWNSMIAVY-----AQNGLSTDAFEVFHGMLKAGGGKY 292

Query: 171 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 230
           N  +LS++LL C+H  +L++G  +H  V K     +    T +I MYCKCG  E A   F
Sbjct: 293 NEVTLSTLLLACAHEGALRVGMCLHDQVIKMGYVNNVIMATSIIDMYCKCGQAEMARNAF 352

Query: 231 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVD 290
             ++ K+V +W AMI+GY  HG   +AL +F +M   G+KP+ ITF+++L AC+HAG ++
Sbjct: 353 DGMKEKNVRSWTAMIAGYGMHGFAREALDVFYQMIWAGVKPNYITFISVLAACSHAGFLE 412

Query: 291 LGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSA 350
            G ++F++M ++Y +    +HY CMVDLLGRAG + EA +LIK M  +    ++G+LL+A
Sbjct: 413 EGWRWFNAMSHEYNVEPGVEHYGCMVDLLGRAGYIKEAYNLIKSMKVRRDFVLWGSLLAA 472

Query: 351 CRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKM 410
           CR+HK ++LAE +A  LF L+P+N  G YV LANIYA   +W DV R+R+ +K+  +VK 
Sbjct: 473 CRIHKDVELAEISARELFKLDPSNC-GYYVLLANIYADAGRWKDVERMRILVKDRGLVKP 531

Query: 411 PGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVK 470
           PGYS +E+   VH F  GD+ HP+   I++ L+EL  +++ AGYVP++   LH V EE K
Sbjct: 532 PGYSLVELKGRVHVFLVGDKEHPQHEKIYKYLEELSVKLQEAGYVPNMASVLHDVDEEEK 591

Query: 471 EQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTR 530
           E ++  HSEKLA+AFG++    G+ I V KNLRVCGDCH   K IS I  REIIVRD  R
Sbjct: 592 EMIVRVHSEKLAVAFGVMNSIPGSTIHVIKNLRVCGDCHTVIKLISKIVSREIIVRDAKR 651

Query: 531 FHHFKDGTCSCGDYW 545
           FHHFKDG CSCGDYW
Sbjct: 652 FHHFKDGLCSCGDYW 666



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 81/162 (50%), Gaps = 14/162 (8%)

Query: 132 VVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLG 191
           V +W ++I+   + G      + + L+    M  L I+PN S+    +  CS L  L  G
Sbjct: 47  VYSWNSLIAELARGGD-----SCESLRAFSWMRKLDIKPNRSTFPCAIKSCSALFDLNSG 101

Query: 192 KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQH 251
           KQ HQ         D    + LI MY KCG L +A  LF EI R+++VTW ++I+GY Q+
Sbjct: 102 KQAHQQALVFGFESDLFVSSALIDMYSKCGKLSNARVLFDEIPRRNIVTWTSLITGYVQN 161

Query: 252 GKGEKALRLFDKM---------KDEGMKPDSITFVALLLACN 284
               +AL +F +          ++ G   DS+  +++L AC+
Sbjct: 162 DDAHEALMVFKEFLFEKSEGNGEEVGTSVDSVAMISVLSACS 203



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 80/344 (23%), Positives = 135/344 (39%), Gaps = 77/344 (22%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYN-IMLSCILLNS------- 52
           M  K  V+WNS++A +A Q G   DA E+F  + +     YN + LS +LL         
Sbjct: 253 MAEKDVVSWNSMIAVYA-QNGLSTDAFEVFHGMLKAGGGKYNEVTLSTLLLACAHEGALR 311

Query: 53  -----DDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAM 107
                 D V    +   + +       ++I  + +      AR+ F  M EKN  SW+AM
Sbjct: 312 VGMCLHDQVIKMGYVNNVIMA-----TSIIDMYCKCGQAEMARNAFDGMKEKNVRSWTAM 366

Query: 108 ISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLG 167
           I+GY   G                                    +A + L +   MI  G
Sbjct: 367 IAGYGMHG------------------------------------FAREALDVFYQMIWAG 390

Query: 168 IRPNASSLSSVLLGCSHLSSLQLG-KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 226
           ++PN  +  SVL  CSH   L+ G +  + +  +  +         ++ +  + G +++A
Sbjct: 391 VKPNYITFISVLAACSHAGFLEEGWRWFNAMSHEYNVEPGVEHYGCMVDLLGRAGYIKEA 450

Query: 227 CKLFLEIQ-RKDVVTWNAMISGYAQHGKGE----KALRLFDKMKDEGMKPDSITFVALLL 281
             L   ++ R+D V W ++++    H   E     A  LF       + P +  +  LL 
Sbjct: 451 YNLIKSMKVRRDFVLWGSLLAACRIHKDVELAEISARELFK------LDPSNCGYYVLLA 504

Query: 282 ACNHAGLVDLG----IQYFDSMVNDYGIAAKPDHYTCMVDLLGR 321
                   D G    ++    +V D G+  KP  Y+ +V+L GR
Sbjct: 505 NI----YADAGRWKDVERMRILVKDRGL-VKPPGYS-LVELKGR 542



 Score = 48.1 bits (113), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 36/152 (23%), Positives = 67/152 (44%), Gaps = 16/152 (10%)

Query: 185 LSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAM 244
           L  L +  ++H+  F +      T LT L + Y                 R DV +WN++
Sbjct: 9   LQLLTISFKIHKNHFSTTAAATNTNLTTLFNKY---------------FDRTDVYSWNSL 53

Query: 245 ISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYG 304
           I+  A+ G   ++LR F  M+   +KP+  TF   + +C+    ++ G Q     +  +G
Sbjct: 54  IAELARGGDSCESLRAFSWMRKLDIKPNRSTFPCAIKSCSALFDLNSGKQAHQQALV-FG 112

Query: 305 IAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 336
             +     + ++D+  + GKL  A  L  ++P
Sbjct: 113 FESDLFVSSALIDMYSKCGKLSNARVLFDEIP 144


>gi|225432698|ref|XP_002278762.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14820
           [Vitis vinifera]
 gi|297737070|emb|CBI26271.3| unnamed protein product [Vitis vinifera]
          Length = 727

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 221/550 (40%), Positives = 329/550 (59%), Gaps = 16/550 (2%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCIL--------LNSDDV 55
           +  V W+ ++ G+  Q G   DA  LF+++   +V    +MLS +L        L+   +
Sbjct: 186 RDVVTWSIMIDGYC-QSGLFNDALLLFEEMKNYNVEPDEMMLSTVLSACGRAGNLSYGKM 244

Query: 56  VAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECG 115
           +  F   +   + D    + +++ +    +M  A +LF  M  KN V+ +AM++GY + G
Sbjct: 245 IHDF-IMENNIVVDPHLQSALVTMYASCGSMDLALNLFEKMTPKNLVASTAMVTGYSKLG 303

Query: 116 QLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSL 175
           Q++ A  +F     K +V W+AMISGY      E+   ++ L L   M  LGI+P+  ++
Sbjct: 304 QIENARSVFNQMVKKDLVCWSAMISGY-----AESDSPQEALNLFNEMQSLGIKPDQVTM 358

Query: 176 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR 235
            SV+  C+HL +L   K +H  V K+           LI MY KCG LE A ++F ++ R
Sbjct: 359 LSVITACAHLGALDQAKWIHLFVDKNGFGGALPINNALIEMYAKCGSLERARRIFDKMPR 418

Query: 236 KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQY 295
           K+V++W  MIS +A HG    ALR F +M+DE ++P+ ITFV +L AC+HAGLV+ G + 
Sbjct: 419 KNVISWTCMISAFAMHGDAGSALRFFHQMEDENIEPNGITFVGVLYACSHAGLVEEGRKI 478

Query: 296 FDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHK 355
           F SM+N++ I  K  HY CMVDL GRA  L EA++L++ MP  P   I+G+L++ACRVH 
Sbjct: 479 FYSMINEHNITPKHVHYGCMVDLFGRANLLREALELVEAMPLAPNVIIWGSLMAACRVHG 538

Query: 356 RLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSW 415
            ++L EFAA  L  L+P +  G +V L+NIYA  ++W+DV ++R  MK   + K  G S 
Sbjct: 539 EIELGEFAAKRLLELDP-DHDGAHVFLSNIYAKARRWEDVGQVRKLMKHKGISKERGCSR 597

Query: 416 IEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLL 475
            E+   +HEF   DR H     I+EKL E+  ++KL GY P+    L  + EE K++++L
Sbjct: 598 FELNNEIHEFLVADRSHKHADEIYEKLYEVVSKLKLVGYSPNTCSILVDLEEEEKKEVVL 657

Query: 476 FHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFK 535
           +HSEKLA+ +GL++   G+ IR+ KNLRVC DCH   K  S + +REI+VRD TRFHH+K
Sbjct: 658 WHSEKLALCYGLMRDGTGSCIRIIKNLRVCEDCHTFIKLASKVYEREIVVRDRTRFHHYK 717

Query: 536 DGTCSCGDYW 545
           DG CSC DYW
Sbjct: 718 DGVCSCKDYW 727



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 87/355 (24%), Positives = 160/355 (45%), Gaps = 46/355 (12%)

Query: 23  LKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK----DTASWNTMIS 78
           L  A  +F+ IP+P+    N  L   L  S++       ++R+  +    D  S+  ++ 
Sbjct: 72  LDYALSVFNLIPKPETHLCNRFLR-ELSRSEEPEKTLLVYERMRTQGLAVDRFSFPPLLK 130

Query: 79  GFVQKKNMAKARDLF-LAMP---EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVA 134
              + K++ +  ++  LA     + +    + ++  Y  CG++ +A  +F     + VV 
Sbjct: 131 ALSRVKSLVEGLEIHGLAAKLGFDSDPFVQTGLVRMYAACGRIAEARLMFDKMFHRDVVT 190

Query: 135 WTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQV 194
           W+ MI GY + G        D L L   M    + P+   LS+VL  C    +L  GK +
Sbjct: 191 WSIMIDGYCQSGLF-----NDALLLFEEMKNYNVEPDEMMLSTVLSACGRAGNLSYGKMI 245

Query: 195 HQLVFKSPLCKDTTALTPLISMYCKCGDL------------------------------- 223
           H  + ++ +  D    + L++MY  CG +                               
Sbjct: 246 HDFIMENNIVVDPHLQSALVTMYASCGSMDLALNLFEKMTPKNLVASTAMVTGYSKLGQI 305

Query: 224 EDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC 283
           E+A  +F ++ +KD+V W+AMISGYA+    ++AL LF++M+  G+KPD +T ++++ AC
Sbjct: 306 ENARSVFNQMVKKDLVCWSAMISGYAESDSPQEALNLFNEMQSLGIKPDQVTMLSVITAC 365

Query: 284 NHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 338
            H G +D   ++    V+  G          ++++  + G L  A  +  KMP K
Sbjct: 366 AHLGALDQA-KWIHLFVDKNGFGGALPINNALIEMYAKCGSLERARRIFDKMPRK 419



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/235 (28%), Positives = 111/235 (47%), Gaps = 12/235 (5%)

Query: 107 MISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLL---RMM 163
           +IS       LD A+ +F + P       T + + +++    E S +E+  K L     M
Sbjct: 62  VISSCALSSSLDYALSVFNLIPKPE----THLCNRFLR----ELSRSEEPEKTLLVYERM 113

Query: 164 IGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDL 223
              G+  +  S   +L   S + SL  G ++H L  K     D    T L+ MY  CG +
Sbjct: 114 RTQGLAVDRFSFPPLLKALSRVKSLVEGLEIHGLAAKLGFDSDPFVQTGLVRMYAACGRI 173

Query: 224 EDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC 283
            +A  +F ++  +DVVTW+ MI GY Q G    AL LF++MK+  ++PD +    +L AC
Sbjct: 174 AEARLMFDKMFHRDVVTWSIMIDGYCQSGLFNDALLLFEEMKNYNVEPDEMMLSTVLSAC 233

Query: 284 NHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 338
             AG +  G    D ++ +  I   P   + +V +    G +  A++L +KM  K
Sbjct: 234 GRAGNLSYGKMIHDFIMEN-NIVVDPHLQSALVTMYASCGSMDLALNLFEKMTPK 287


>gi|125570322|gb|EAZ11837.1| hypothetical protein OsJ_01713 [Oryza sativa Japonica Group]
          Length = 877

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 205/441 (46%), Positives = 277/441 (62%), Gaps = 6/441 (1%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI 164
           + +I  Y +C  L  A  +F+      ++A T+MI+   +  +      E  +KL   M+
Sbjct: 443 NGLIDSYWKCSCLSDANRVFEECSSGDIIACTSMITALSQCDH-----GEGAIKLFMEML 497

Query: 165 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 224
             G+ P+   LSS+L  C+ LS+ + GKQVH  + K     D  A   L+  Y KCG +E
Sbjct: 498 RKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIE 557

Query: 225 DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 284
           DA   F  +  + VV+W+AMI G AQHG G++AL LF +M DEG+ P+ IT  ++L ACN
Sbjct: 558 DAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACN 617

Query: 285 HAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIF 344
           HAGLVD   +YF+SM   +GI    +HY+CM+DLLGRAGKL +A++L+  MPF+   +I+
Sbjct: 618 HAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASIW 677

Query: 345 GTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKE 404
           G LL A RVHK  +L + AA  LF L P   +G +V LAN YA+   W++VA++R  MK+
Sbjct: 678 GALLGASRVHKDPELGKLAAEKLFILEP-EKSGTHVLLANTYASAGMWNEVAKVRKLMKD 736

Query: 405 NNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHA 464
           +N+ K P  SWIEV   VH F  GD+ HP    I+ KL EL   M  AG+VP+++  LH 
Sbjct: 737 SNIKKEPAMSWIEVKDKVHTFIVGDKSHPMTKEIYAKLVELGDLMSKAGFVPNVDVDLHD 796

Query: 465 VGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREII 524
           +    KE LL  HSE+LA+AF L+  P G PIRV KNLR+C DCH A K+IS I  REII
Sbjct: 797 LDRSEKELLLSHHSERLAVAFALLSTPPGAPIRVKKNLRICRDCHVAFKFISKIVSREII 856

Query: 525 VRDTTRFHHFKDGTCSCGDYW 545
           +RD  RFHHF+DGTCSCGDYW
Sbjct: 857 IRDINRFHHFRDGTCSCGDYW 877



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 96/351 (27%), Positives = 160/351 (45%), Gaps = 34/351 (9%)

Query: 26  AQELFDKIPQPDVVSYNIMLSCILLNS--DDVVAAFDFFQR---------LPIKDTASWN 74
           A+  FD+IP P  VS++ +++    N      + AF   +          LP+      +
Sbjct: 56  ARRFFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKCVPD 115

Query: 75  TMISGFVQKKNMAKA--RDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPV-KS 131
             +   V    MA     D+F+A         +A+++ Y   G +D A  +F  A   ++
Sbjct: 116 ARLGAQVHAMAMATGFGSDVFVA---------NALVAMYGGFGFMDDARRVFNEADSERN 166

Query: 132 VVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLG 191
            V+W  ++S Y+K     N    D +++   M+  GI+P     S V+  C+   +++ G
Sbjct: 167 AVSWNGLMSAYVK-----NDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAG 221

Query: 192 KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQH 251
           +QVH +V +    KD      L+ MY K G ++ A  +F ++   DVV+WNA+ISG   +
Sbjct: 222 RQVHAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLN 281

Query: 252 GKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDH 311
           G   +A+ L  +MK  G+ P+  T  ++L AC+ AG  DLG Q    M+      A  D 
Sbjct: 282 GHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIK---ANADSDD 338

Query: 312 Y--TCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLA 360
           Y    +VD+  +   L +A  +   M F     +   L+S C    R D A
Sbjct: 339 YIGVGLVDMYAKNHFLDDARKVFDWM-FHRDLILCNALISGCSHGGRHDEA 388



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 94/372 (25%), Positives = 172/372 (46%), Gaps = 46/372 (12%)

Query: 21  GKLKDAQELFDKI-PQPDVVSYNIMLSCILLNSD--DVVAAFDFFQRLPIKDTA-SWNTM 76
           G + DA+ +F++   + + VS+N ++S  + N    D +  F       I+ T   ++ +
Sbjct: 149 GFMDDARRVFNEADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCV 208

Query: 77  ISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSV 132
           ++     +N+   R +   +     +K+  + +A++  Y++ G++D A  +F+  P   V
Sbjct: 209 VNACTGSRNIEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMPDSDV 268

Query: 133 VAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGK 192
           V+W A+ISG      V N      ++LL  M   G+ PN  +LSS+L  CS   +  LG+
Sbjct: 269 VSWNALISGC-----VLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGR 323

Query: 193 QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHG 252
           Q+H  + K+    D      L+ MY K   L+DA K+F  +  +D++  NA+ISG +  G
Sbjct: 324 QIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNALISGCSHGG 383

Query: 253 KGEKALRLFDKMKDEGMKPDSITFVALLLACN-----------HAGLVDLGIQYFDSMVN 301
           + ++AL LF +++ EG+  +  T  A+L +             HA  V +G  +   +VN
Sbjct: 384 RHDEALSLFYELRKEGLGVNRTTLAAVLKSTASLEAASTTRQVHALAVKIGFIFDAHVVN 443

Query: 302 D-----------------YGIAAKPDHYTC--MVDLLGRAGKLVEAVDLIKKM---PFKP 339
                             +   +  D   C  M+  L +      A+ L  +M     +P
Sbjct: 444 GLIDSYWKCSCLSDANRVFEECSSGDIIACTSMITALSQCDHGEGAIKLFMEMLRKGLEP 503

Query: 340 QPAIFGTLLSAC 351
            P +  +LL+AC
Sbjct: 504 DPFVLSSLLNAC 515



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 75/282 (26%), Positives = 130/282 (46%), Gaps = 14/282 (4%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G++  A  +F+K+P  DVVS+N ++S  +LN  D   A +   ++           +S  
Sbjct: 251 GRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDH-RAIELLLQMKYSGLVPNVFTLSSI 309

Query: 81  VQKKNMAKARDL------FLAMPEKNSVSW--SAMISGYIECGQLDKAVELFKVAPVKSV 132
           ++  + A A DL      F+     +S  +    ++  Y +   LD A ++F     + +
Sbjct: 310 LKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDL 369

Query: 133 VAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGK 192
           +   A+ISG    G       ++ L L   +   G+  N ++L++VL   + L +    +
Sbjct: 370 ILCNALISGCSHGGR-----HDEALSLFYELRKEGLGVNRTTLAAVLKSTASLEAASTTR 424

Query: 193 QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHG 252
           QVH L  K     D   +  LI  Y KC  L DA ++F E    D++   +MI+  +Q  
Sbjct: 425 QVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEECSSGDIIACTSMITALSQCD 484

Query: 253 KGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ 294
            GE A++LF +M  +G++PD     +LL AC      + G Q
Sbjct: 485 HGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQ 526



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 56/246 (22%), Positives = 98/246 (39%), Gaps = 53/246 (21%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD--------FFQRLPIKDTAS 72
           G +K   E+  K  +PD      +LS  LLN+   ++A++          +R  + D  +
Sbjct: 488 GAIKLFMEMLRKGLEPD----PFVLSS-LLNACASLSAYEQGKQVHAHLIKRQFMSDAFA 542

Query: 73  WNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSV 132
            N ++  + +  ++  A   F ++PE+  VSWSAMI G  + G   +A+ELF        
Sbjct: 543 GNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALELFG------- 595

Query: 133 VAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGK 192
                                         M+  GI PN  +++SVL  C+H   +   K
Sbjct: 596 -----------------------------RMVDEGINPNHITMTSVLCACNHAGLVDEAK 626

Query: 193 QVHQLVFKSPLCKDTTA--LTPLISMYCKCGDLEDACKLFLEIQ-RKDVVTWNAMISGYA 249
           +      K     D T    + +I +  + G L+DA +L   +  + +   W A++    
Sbjct: 627 RYFN-SMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASIWGALLGASR 685

Query: 250 QHGKGE 255
            H   E
Sbjct: 686 VHKDPE 691



 Score = 38.5 bits (88), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 2/99 (2%)

Query: 171 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 230
           +A ++S  L   +   +L  G  +H  + KS      +    LIS Y KC     A + F
Sbjct: 3   SAGTISQQLTRYAAAQALLPGAHLHASLLKSG--SLASFRNHLISFYSKCRRPCCARRFF 60

Query: 231 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGM 269
            EI     V+W+++++ Y+ +G    A++ F  M+ EG+
Sbjct: 61  DEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGV 99


>gi|297719939|ref|NP_001172331.1| Os01g0355000 [Oryza sativa Japonica Group]
 gi|53791352|dbj|BAD52598.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|215768699|dbj|BAH00928.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|255673214|dbj|BAH91061.1| Os01g0355000 [Oryza sativa Japonica Group]
          Length = 877

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 205/441 (46%), Positives = 277/441 (62%), Gaps = 6/441 (1%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI 164
           + +I  Y +C  L  A  +F+      ++A T+MI+   +  +      E  +KL   M+
Sbjct: 443 NGLIDSYWKCSCLSDANRVFEECSSGDIIACTSMITALSQCDH-----GEGAIKLFMEML 497

Query: 165 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 224
             G+ P+   LSS+L  C+ LS+ + GKQVH  + K     D  A   L+  Y KCG +E
Sbjct: 498 RKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIE 557

Query: 225 DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 284
           DA   F  +  + VV+W+AMI G AQHG G++AL LF +M DEG+ P+ IT  ++L ACN
Sbjct: 558 DAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACN 617

Query: 285 HAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIF 344
           HAGLVD   +YF+SM   +GI    +HY+CM+DLLGRAGKL +A++L+  MPF+   +I+
Sbjct: 618 HAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASIW 677

Query: 345 GTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKE 404
           G LL A RVHK  +L + AA  LF L P   +G +V LAN YA+   W++VA++R  MK+
Sbjct: 678 GALLGASRVHKDPELGKLAAEKLFILEP-EKSGTHVLLANTYASAGMWNEVAKVRKLMKD 736

Query: 405 NNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHA 464
           +N+ K P  SWIEV   VH F  GD+ HP    I+ KL EL   M  AG+VP+++  LH 
Sbjct: 737 SNIKKEPAMSWIEVKDKVHTFIVGDKSHPMTKEIYAKLVELGDLMSKAGFVPNVDVDLHD 796

Query: 465 VGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREII 524
           +    KE LL  HSE+LA+AF L+  P G PIRV KNLR+C DCH A K+IS I  REII
Sbjct: 797 LDRSEKELLLSHHSERLAVAFALLSTPPGAPIRVKKNLRICRDCHVAFKFISKIVSREII 856

Query: 525 VRDTTRFHHFKDGTCSCGDYW 545
           +RD  RFHHF+DGTCSCGDYW
Sbjct: 857 IRDINRFHHFRDGTCSCGDYW 877



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 96/351 (27%), Positives = 161/351 (45%), Gaps = 34/351 (9%)

Query: 26  AQELFDKIPQPDVVSYNIMLSCILLNS--DDVVAAFDFFQR---------LPIKDTASWN 74
           A+ +FD+IP P  VS++ +++    N      + AF   +          LP+      +
Sbjct: 56  ARRVFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKCVPD 115

Query: 75  TMISGFVQKKNMAKA--RDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPV-KS 131
             +   V    MA     D+F+A         +A+++ Y   G +D A  +F  A   ++
Sbjct: 116 ARLGAQVHAMAMATGFGSDVFVA---------NALVAMYGGFGFMDDARRVFNEADSERN 166

Query: 132 VVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLG 191
            V+W  ++S Y+K     N    D +++   M+  GI+P     S V+  C+   +++ G
Sbjct: 167 AVSWNGLMSAYVK-----NDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAG 221

Query: 192 KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQH 251
           +QVH +V +    KD      L+ MY K G ++ A  +F ++   DVV+WNA+ISG   +
Sbjct: 222 RQVHAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLN 281

Query: 252 GKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDH 311
           G   +A+ L  +MK  G+ P+  T  ++L AC+ AG  DLG Q    M+      A  D 
Sbjct: 282 GHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIK---ANADSDD 338

Query: 312 Y--TCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLA 360
           Y    +VD+  +   L +A  +   M F     +   L+S C    R D A
Sbjct: 339 YIGVGLVDMYAKNHFLDDARKVFDWM-FHRDLILCNALISGCSHGGRHDEA 388



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 94/372 (25%), Positives = 172/372 (46%), Gaps = 46/372 (12%)

Query: 21  GKLKDAQELFDKI-PQPDVVSYNIMLSCILLNSD--DVVAAFDFFQRLPIKDTA-SWNTM 76
           G + DA+ +F++   + + VS+N ++S  + N    D +  F       I+ T   ++ +
Sbjct: 149 GFMDDARRVFNEADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCV 208

Query: 77  ISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSV 132
           ++     +N+   R +   +     +K+  + +A++  Y++ G++D A  +F+  P   V
Sbjct: 209 VNACTGSRNIEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMPDSDV 268

Query: 133 VAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGK 192
           V+W A+ISG      V N      ++LL  M   G+ PN  +LSS+L  CS   +  LG+
Sbjct: 269 VSWNALISGC-----VLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGR 323

Query: 193 QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHG 252
           Q+H  + K+    D      L+ MY K   L+DA K+F  +  +D++  NA+ISG +  G
Sbjct: 324 QIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNALISGCSHGG 383

Query: 253 KGEKALRLFDKMKDEGMKPDSITFVALLLACN-----------HAGLVDLGIQYFDSMVN 301
           + ++AL LF +++ EG+  +  T  A+L +             HA  V +G  +   +VN
Sbjct: 384 RHDEALSLFYELRKEGLGVNRTTLAAVLKSTASLEAASTTRQVHALAVKIGFIFDAHVVN 443

Query: 302 D-----------------YGIAAKPDHYTC--MVDLLGRAGKLVEAVDLIKKM---PFKP 339
                             +   +  D   C  M+  L +      A+ L  +M     +P
Sbjct: 444 GLIDSYWKCSCLSDANRVFEECSSGDIIACTSMITALSQCDHGEGAIKLFMEMLRKGLEP 503

Query: 340 QPAIFGTLLSAC 351
            P +  +LL+AC
Sbjct: 504 DPFVLSSLLNAC 515



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 75/282 (26%), Positives = 130/282 (46%), Gaps = 14/282 (4%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G++  A  +F+K+P  DVVS+N ++S  +LN  D   A +   ++           +S  
Sbjct: 251 GRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDH-RAIELLLQMKYSGLVPNVFTLSSI 309

Query: 81  VQKKNMAKARDL------FLAMPEKNSVSW--SAMISGYIECGQLDKAVELFKVAPVKSV 132
           ++  + A A DL      F+     +S  +    ++  Y +   LD A ++F     + +
Sbjct: 310 LKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDL 369

Query: 133 VAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGK 192
           +   A+ISG    G       ++ L L   +   G+  N ++L++VL   + L +    +
Sbjct: 370 ILCNALISGCSHGGR-----HDEALSLFYELRKEGLGVNRTTLAAVLKSTASLEAASTTR 424

Query: 193 QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHG 252
           QVH L  K     D   +  LI  Y KC  L DA ++F E    D++   +MI+  +Q  
Sbjct: 425 QVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEECSSGDIIACTSMITALSQCD 484

Query: 253 KGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ 294
            GE A++LF +M  +G++PD     +LL AC      + G Q
Sbjct: 485 HGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQ 526



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 56/246 (22%), Positives = 98/246 (39%), Gaps = 53/246 (21%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD--------FFQRLPIKDTAS 72
           G +K   E+  K  +PD      +LS  LLN+   ++A++          +R  + D  +
Sbjct: 488 GAIKLFMEMLRKGLEPD----PFVLSS-LLNACASLSAYEQGKQVHAHLIKRQFMSDAFA 542

Query: 73  WNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSV 132
            N ++  + +  ++  A   F ++PE+  VSWSAMI G  + G   +A+ELF        
Sbjct: 543 GNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALELFG------- 595

Query: 133 VAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGK 192
                                         M+  GI PN  +++SVL  C+H   +   K
Sbjct: 596 -----------------------------RMVDEGINPNHITMTSVLCACNHAGLVDEAK 626

Query: 193 QVHQLVFKSPLCKDTTA--LTPLISMYCKCGDLEDACKLFLEIQ-RKDVVTWNAMISGYA 249
           +      K     D T    + +I +  + G L+DA +L   +  + +   W A++    
Sbjct: 627 RYFN-SMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASIWGALLGASR 685

Query: 250 QHGKGE 255
            H   E
Sbjct: 686 VHKDPE 691



 Score = 38.5 bits (88), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 27/99 (27%), Positives = 49/99 (49%), Gaps = 2/99 (2%)

Query: 171 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 230
           +A ++S  L   +   +L  G  +H  + KS      +    LIS Y KC     A ++F
Sbjct: 3   SAGTISQQLTRYAAAQALLPGAHLHASLLKSG--SLASFRNHLISFYSKCRRPCCARRVF 60

Query: 231 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGM 269
            EI     V+W+++++ Y+ +G    A++ F  M+ EG+
Sbjct: 61  DEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGV 99


>gi|356542011|ref|XP_003539465.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Glycine max]
          Length = 876

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 203/529 (38%), Positives = 306/529 (57%), Gaps = 44/529 (8%)

Query: 53  DDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP--------------- 97
           DD  + F       ++   SW  MISG++Q  +  +A +LF  M                
Sbjct: 356 DDAFSLFSLMH--GVQSVVSWTAMISGYLQNGDTDQAVNLFSLMRREGVKPNHFTYSTIL 413

Query: 98  --------------------EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTA 137
                               EK+S   +A++  +++ G +  AV++F++   K V+AW+A
Sbjct: 414 TVQHAVFISEIHAEVIKTNYEKSSSVGTALLDAFVKIGNISDAVKVFELIETKDVIAWSA 473

Query: 138 MISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSH-LSSLQLGKQVHQ 196
           M++GY + G  E     +  K+   +   GI+PN  +  S++  C+   +S++ GKQ H 
Sbjct: 474 MLAGYAQAGETE-----EAAKIFHQLTREGIKPNEFTFCSIINACTAPTASVEQGKQFHA 528

Query: 197 LVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEK 256
              K  L       + L+++Y K G++E A ++F   + +D+V+WN+MISGYAQHG+ +K
Sbjct: 529 YAIKLRLNNALCVSSSLVTLYAKRGNIESAHEIFKRQKERDLVSWNSMISGYAQHGQAKK 588

Query: 257 ALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMV 316
           AL +F++M+   ++ D+ITF+ ++ AC HAGLV  G  YF+ M+ND+ I    +HY+CM+
Sbjct: 589 ALEVFEEMQKRNLEVDAITFIGVISACAHAGLVGKGQNYFNIMINDHHINPTMEHYSCMI 648

Query: 317 DLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAA 376
           DL  RAG L +A+D+I  MPF P   ++  +L+A RVH+ ++L + AA  + +L P ++A
Sbjct: 649 DLYSRAGMLGKAMDIINGMPFPPAATVWRIVLAASRVHRNIELGKLAAEKIISLEPQHSA 708

Query: 377 GCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELV 436
             YV L+NIYAA   W +   +R  M +  V K PGYSWIEV    + F +GD  HP   
Sbjct: 709 A-YVLLSNIYAAAGNWHEKVNVRKLMDKRRVKKEPGYSWIEVKNKTYSFLAGDLSHPLSD 767

Query: 437 SIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPI 496
            I+ KL EL  R++  GY PD  +  H + +E KE +L  HSE+LAIAFGLI      P+
Sbjct: 768 HIYSKLSELNTRLRDVGYQPDTNYVFHDIEDEQKETILSHHSERLAIAFGLIATLPEIPL 827

Query: 497 RVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           ++ KNLRVCGDCH   K +S +EKR I+VRD+ RFHHFK G CSCGDYW
Sbjct: 828 QIVKNLRVCGDCHSFIKLVSLVEKRYIVVRDSNRFHHFKGGLCSCGDYW 876



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 96/379 (25%), Positives = 171/379 (45%), Gaps = 43/379 (11%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLN--SDDVVAAFDFFQRLPI 67
           NS++  + K  G ++D + +FD++   DVVS+N +L+    N  +D V   F   Q    
Sbjct: 141 NSLVDMYTKT-GNVRDGRRVFDEMGDRDVVSWNSLLTGYSWNRFNDQVWELFCLMQVEGY 199

Query: 68  K-DTASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMISGYIECGQLDKAVE 122
           + D  + +T+I+    +  +A    +   +     E   +  +++IS   + G L  A  
Sbjct: 200 RPDYYTVSTVIAALANQGAVAIGMQIHALVVKLGFETERLVCNSLISMLSKSGMLRDARV 259

Query: 123 LFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGC 182
           +F     K  V+W +MI+     G+V N    +  +    M   G +P  ++ +SV+  C
Sbjct: 260 VFDNMENKDSVSWNSMIA-----GHVINGQDLEAFETFNNMQLAGAKPTHATFASVIKSC 314

Query: 183 SHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF-LEIQRKDVVTW 241
           + L  L L + +H    KS L  +   LT L+    KC +++DA  LF L    + VV+W
Sbjct: 315 ASLKELGLVRVLHCKTLKSGLSTNQNVLTALMVALTKCKEIDDAFSLFSLMHGVQSVVSW 374

Query: 242 NAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL---------------LACNHA 286
            AMISGY Q+G  ++A+ LF  M+ EG+KP+  T+  +L               +  N+ 
Sbjct: 375 TAMISGYLQNGDTDQAVNLFSLMRREGVKPNHFTYSTILTVQHAVFISEIHAEVIKTNYE 434

Query: 287 GLVDLGIQYFDSMVNDYGIAAKPD-----------HYTCMVDLLGRAGKLVEAVDLIKKM 335
               +G    D+ V    I+                ++ M+    +AG+  EA  +  ++
Sbjct: 435 KSSSVGTALLDAFVKIGNISDAVKVFELIETKDVIAWSAMLAGYAQAGETEEAAKIFHQL 494

Query: 336 P---FKPQPAIFGTLLSAC 351
                KP    F ++++AC
Sbjct: 495 TREGIKPNEFTFCSIINAC 513



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 67/281 (23%), Positives = 131/281 (46%), Gaps = 10/281 (3%)

Query: 120 AVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVL 179
           A +LF   P++ +     ++     F Y      ++ L L   +   G+ P++ ++S VL
Sbjct: 55  AQQLFDQTPLRDLKQHNQLL-----FRYSRCDQTQEALHLFVSLYRSGLSPDSYTMSCVL 109

Query: 180 LGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVV 239
             C+   +  +G+QVH    K  L    +    L+ MY K G++ D  ++F E+  +DVV
Sbjct: 110 SVCAGSFNGTVGEQVHCQCVKCGLVHHLSVGNSLVDMYTKTGNVRDGRRVFDEMGDRDVV 169

Query: 240 TWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSM 299
           +WN++++GY+ +   ++   LF  M+ EG +PD  T   ++ A  + G V +G+Q   ++
Sbjct: 170 SWNSLLTGYSWNRFNDQVWELFCLMQVEGYRPDYYTVSTVIAALANQGAVAIGMQ-IHAL 228

Query: 300 VNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDL 359
           V   G   +      ++ +L ++G L +A  +   M  K   ++    + A  V    DL
Sbjct: 229 VVKLGFETERLVCNSLISMLSKSGMLRDARVVFDNMENK--DSVSWNSMIAGHVINGQDL 286

Query: 360 AEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRL 400
             F   N  N+  A A   +   A++  +     ++  +R+
Sbjct: 287 EAFETFN--NMQLAGAKPTHATFASVIKSCASLKELGLVRV 325



 Score = 55.5 bits (132), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 73/134 (54%), Gaps = 11/134 (8%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNS----DDVV 56
           +  K  + W+++LAG+A Q G+ ++A ++F ++ + + +  N    C ++N+       V
Sbjct: 463 IETKDVIAWSAMLAGYA-QAGETEEAAKIFHQLTR-EGIKPNEFTFCSIINACTAPTASV 520

Query: 57  AAFDFFQRLPIK-----DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGY 111
                F    IK          +++++ + ++ N+  A ++F    E++ VSW++MISGY
Sbjct: 521 EQGKQFHAYAIKLRLNNALCVSSSLVTLYAKRGNIESAHEIFKRQKERDLVSWNSMISGY 580

Query: 112 IECGQLDKAVELFK 125
            + GQ  KA+E+F+
Sbjct: 581 AQHGQAKKALEVFE 594


>gi|357142905|ref|XP_003572732.1| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
           mitochondrial-like [Brachypodium distachyon]
          Length = 669

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 226/535 (42%), Positives = 321/535 (60%), Gaps = 22/535 (4%)

Query: 25  DAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKK 84
           DA++ FD+IP P+ V    M S  + N + V  +   F++L    +A+     +  V   
Sbjct: 143 DARKAFDEIPSPNPVIITAMASGYVRN-NLVYPSLALFRKLIASGSATAVDEAAALVAFS 201

Query: 85  NMAKARDLFL-----AMPEKNSVSWSA-----MISGYIECGQLD--KAVELFKVAPVKSV 132
             A+  D  +     A+  K  +   A     M+  Y + G+ D   A ++F     K V
Sbjct: 202 ASARIPDCGITSSLHALVVKTGLDGDAGVVNTMLDAYAKGGRRDLGAARKVFDTME-KDV 260

Query: 133 VAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLG--IRPNASSLSSVLLGCSHLSSLQL 190
           V+W +MI+ Y      +N  + D L L R M+ +   I+ NA +LS++LL C+H  ++Q 
Sbjct: 261 VSWNSMIALY-----AQNGMSADALGLYRKMLNVSGSIKCNAVTLSAILLACAHAGTIQT 315

Query: 191 GKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQ 250
           GK +H  V +  L ++    T ++ MY KCG +E A K F +I+ K++++W+AMI+GY  
Sbjct: 316 GKCIHNQVVRMGLEENVYVGTSVVDMYSKCGRVEMARKAFQKIKEKNILSWSAMITGYGM 375

Query: 251 HGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPD 310
           HG G++AL +F++M   G  P+ ITF+++L AC+HAGL+D G  ++++M   +GI    +
Sbjct: 376 HGHGQEALDIFNEMCRSGQNPNYITFISVLAACSHAGLLDKGRYWYNAMKKRFGIEPGVE 435

Query: 311 HYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNL 370
           HY CMVDLLGRAG L EA  LIK+M  KP  AI+G LLSACR+HK ++LAE +A  LF L
Sbjct: 436 HYGCMVDLLGRAGCLDEAYGLIKEMKVKPDAAIWGALLSACRIHKNVELAEISAKRLFEL 495

Query: 371 NPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDR 430
           +  N  G YV L+NIYA    W DV R+R+ +K   + K PGYS +E+    H F  GD+
Sbjct: 496 DATN-CGYYVLLSNIYAEAGMWKDVERMRVLVKTRGIEKPPGYSSVELKGRTHLFYVGDK 554

Query: 431 VHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKV 490
            HP+   I+  L +L ++M+ AGYVP+    LH + EE K   L  HSEKLAIAF L+  
Sbjct: 555 SHPQHKEIYSYLGKLLEKMQEAGYVPNTGSVLHDLDEEEKASALHIHSEKLAIAFALMNS 614

Query: 491 PLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
             G+ I V KNLRVC DCH A K I+ I +REIIVRD  RFHHFKDG+CSCGDYW
Sbjct: 615 VPGSVIHVIKNLRVCTDCHTAIKLITKIAQREIIVRDLQRFHHFKDGSCSCGDYW 669



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 73/242 (30%), Positives = 116/242 (47%), Gaps = 13/242 (5%)

Query: 103 SWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRM 162
           S SA++  Y  C +   A + F   P  + V  TAM S     GYV N+     L L R 
Sbjct: 127 SASALLHMYNHCSRPIDARKAFDEIPSPNPVIITAMAS-----GYVRNNLVYPSLALFRK 181

Query: 163 MIGLGIRPNASSLSSVLL--GCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKC 220
           +I  G        ++++     + +    +   +H LV K+ L  D   +  ++  Y K 
Sbjct: 182 LIASGSATAVDEAAALVAFSASARIPDCGITSSLHALVVKTGLDGDAGVVNTMLDAYAKG 241

Query: 221 G--DLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKD--EGMKPDSITF 276
           G  DL  A K+F +   KDVV+WN+MI+ YAQ+G    AL L+ KM +    +K +++T 
Sbjct: 242 GRRDLGAARKVF-DTMEKDVVSWNSMIALYAQNGMSADALGLYRKMLNVSGSIKCNAVTL 300

Query: 277 VALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 336
            A+LLAC HAG +  G +   + V   G+       T +VD+  + G++  A    +K+ 
Sbjct: 301 SAILLACAHAGTIQTG-KCIHNQVVRMGLEENVYVGTSVVDMYSKCGRVEMARKAFQKIK 359

Query: 337 FK 338
            K
Sbjct: 360 EK 361



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 69/277 (24%), Positives = 109/277 (39%), Gaps = 58/277 (20%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKI--PQPDVVSYNIMLSCILL---NSDDVVAA 58
           K  V+WNS++A +A Q G   DA  L+ K+      +    + LS ILL   ++  +   
Sbjct: 258 KDVVSWNSMIALYA-QNGMSADALGLYRKMLNVSGSIKCNAVTLSAILLACAHAGTIQTG 316

Query: 59  ---FDFFQRLPIKDTASWNTMISGFVQK-KNMAKARDLFLAMPEKNSVSWSAMISGYIEC 114
               +   R+ +++     T +     K   +  AR  F  + EKN +SWSAMI+GY   
Sbjct: 317 KCIHNQVVRMGLEENVYVGTSVVDMYSKCGRVEMARKAFQKIKEKNILSWSAMITGYGMH 376

Query: 115 GQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASS 174
           G   +A+++F                                      M   G  PN  +
Sbjct: 377 GHGQEALDIFN------------------------------------EMCRSGQNPNYIT 400

Query: 175 LSSVLLGCSHLSSLQLGKQVHQLVFK----SPLCKDTTALTPLISMYCKCGDLEDACKLF 230
             SVL  CSH   L  G+  +  + K     P  +    +  L+    + G L++A  L 
Sbjct: 401 FISVLAACSHAGLLDKGRYWYNAMKKRFGIEPGVEHYGCMVDLLG---RAGCLDEAYGLI 457

Query: 231 LEIQRK-DVVTWNAMISGYAQHGKGE----KALRLFD 262
            E++ K D   W A++S    H   E     A RLF+
Sbjct: 458 KEMKVKPDAAIWGALLSACRIHKNVELAEISAKRLFE 494



 Score = 45.4 bits (106), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 58/136 (42%), Gaps = 2/136 (1%)

Query: 191 GKQVHQLVFKSPLC-KDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYA 249
           G+Q+H L  +S L   D  + + L+ MY  C    DA K F EI   + V   AM SGY 
Sbjct: 108 GRQLHLLAIRSGLFPSDPFSASALLHMYNHCSRPIDARKAFDEIPSPNPVIITAMASGYV 167

Query: 250 QHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGI-QYFDSMVNDYGIAAK 308
           ++     +L LF K+   G         AL+     A + D GI     ++V   G+   
Sbjct: 168 RNNLVYPSLALFRKLIASGSATAVDEAAALVAFSASARIPDCGITSSLHALVVKTGLDGD 227

Query: 309 PDHYTCMVDLLGRAGK 324
                 M+D   + G+
Sbjct: 228 AGVVNTMLDAYAKGGR 243


>gi|359495515|ref|XP_002265720.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g25060, mitochondrial-like [Vitis vinifera]
          Length = 678

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 218/533 (40%), Positives = 321/533 (60%), Gaps = 16/533 (3%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           GK+ +A  +FDK+ + D+V +  M++ +  N      A D ++++  K       ++ G 
Sbjct: 154 GKMDEAMRVFDKMGRRDLVCWTTMITGLAQNGQ-AREAVDIYRQMHKKRVEGDGVVMLGL 212

Query: 81  VQKKNMAKARDLFLA----MPEKN----SVSWSAMISGYIECGQLDKAVELFKVAPVKSV 132
           +Q         + L+    M  K+     +  ++++  Y + G L+ A  +F+    K+V
Sbjct: 213 IQACTTLGHSKMGLSIHGYMIRKDIIMDVIVQTSLVDMYAKNGHLELASCVFRRMLYKNV 272

Query: 133 VAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGK 192
           ++W+A+ISG+      +N +A + L+L+  M   G +P++ SL SVLL CS +  L+LGK
Sbjct: 273 ISWSALISGF-----AQNGFAGNALQLVVDMQSFGYKPDSVSLVSVLLACSQVGFLKLGK 327

Query: 193 QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHG 252
            VH  + +  L  D  + T +I MY KCG L  A  +F +I  +D ++WNA+I+ Y  HG
Sbjct: 328 SVHGYIVRR-LHFDCVSSTAVIDMYSKCGSLSFARTVFDQISFRDSISWNAIIASYGIHG 386

Query: 253 KGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY 312
            GE+AL LF +M++  +KPD  TF +LL A +H+GLV+ G  +F  MVN+Y I     HY
Sbjct: 387 SGEEALSLFLQMRETNVKPDHATFASLLSAFSHSGLVEKGRYWFSIMVNEYKIQPSEKHY 446

Query: 313 TCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNP 372
            CMVDLL RAG++ EA +LI+ M  +P  AI+  LLS C  H +  + E AA  +  LNP
Sbjct: 447 ACMVDLLSRAGRVEEAQELIESMITEPGIAIWVALLSGCLNHGKFLIGEMAAKKVLELNP 506

Query: 373 ANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVH 432
            +  G Y  ++N +A  ++WD+VA +R  MK+  + K+PGYS +EV   +H F   D+ H
Sbjct: 507 DDP-GIYSLVSNFFATARRWDEVAEVRKIMKKTGMKKVPGYSVMEVNGKLHAFLMEDKSH 565

Query: 433 PELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPL 492
            +   I + L +L+  MK  GYVP  EF LH + EEVKE++L  HSE+LAIAFGL+    
Sbjct: 566 HQYEEIMQVLGKLDYEMKAMGYVPKTEFVLHNLEEEVKERMLCNHSERLAIAFGLLNTGP 625

Query: 493 GTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           GT + + KNLRVCGDCH ATK+IS I  REI+VRD  RFHHFKDG CSCGDYW
Sbjct: 626 GTRLLITKNLRVCGDCHEATKFISKIVNREIVVRDVKRFHHFKDGVCSCGDYW 678



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 90/384 (23%), Positives = 187/384 (48%), Gaps = 29/384 (7%)

Query: 8   NWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPI 67
           N N+ L     + G ++ A+++FDK PQ  V ++N M+         +  A   + R+  
Sbjct: 40  NSNAKLIQSYARLGHIESARQVFDKSPQCGVDAWNAMI-IAYSRRGAMFEALSLYHRMAS 98

Query: 68  K----DTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISGYIECGQLDK 119
           +    D++++  ++    +  ++    + +    ++    +    +A+++ Y +CG++D+
Sbjct: 99  EGVRPDSSTYTVVLKACTRSLDLRSGEETWRQAVDQGYGDDVFVGAAVLNLYAKCGKMDE 158

Query: 120 AVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVL 179
           A+ +F     + +V WT MI+     G  +N  A + + + R M    +  +   +  ++
Sbjct: 159 AMRVFDKMGRRDLVCWTTMIT-----GLAQNGQAREAVDIYRQMHKKRVEGDGVVMLGLI 213

Query: 180 LGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVV 239
             C+ L   ++G  +H  + +  +  D    T L+ MY K G LE A  +F  +  K+V+
Sbjct: 214 QACTTLGHSKMGLSIHGYMIRKDIIMDVIVQTSLVDMYAKNGHLELASCVFRRMLYKNVI 273

Query: 240 TWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSM 299
           +W+A+ISG+AQ+G    AL+L   M+  G KPDS++ V++LLAC+  G + LG       
Sbjct: 274 SWSALISGFAQNGFAGNALQLVVDMQSFGYKPDSVSLVSVLLACSQVGFLKLGKSV---- 329

Query: 300 VNDYGIAAKPDHYTC-----MVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVH 354
              +G   +  H+ C     ++D+  + G L  A  +  ++ F+   + +  ++++  +H
Sbjct: 330 ---HGYIVRRLHFDCVSSTAVIDMYSKCGSLSFARTVFDQISFRDSIS-WNAIIASYGIH 385

Query: 355 KRLD--LAEFAAMNLFNLNPANAA 376
              +  L+ F  M   N+ P +A 
Sbjct: 386 GSGEEALSLFLQMRETNVKPDHAT 409



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 73/143 (51%), Gaps = 1/143 (0%)

Query: 193 QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHG 252
           ++H L+  + +     +   LI  Y + G +E A ++F +  +  V  WNAMI  Y++ G
Sbjct: 25  KIHALMILTGIFGHGNSNAKLIQSYARLGHIESARQVFDKSPQCGVDAWNAMIIAYSRRG 84

Query: 253 KGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY 312
              +AL L+ +M  EG++PDS T+  +L AC  +  +  G + +   V D G        
Sbjct: 85  AMFEALSLYHRMASEGVRPDSSTYTVVLKACTRSLDLRSGEETWRQAV-DQGYGDDVFVG 143

Query: 313 TCMVDLLGRAGKLVEAVDLIKKM 335
             +++L  + GK+ EA+ +  KM
Sbjct: 144 AAVLNLYAKCGKMDEAMRVFDKM 166



 Score = 47.4 bits (111), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 62/275 (22%), Positives = 116/275 (42%), Gaps = 58/275 (21%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIP----QPDVVSY-NIMLSCI---LLNS 52
           M  K  ++W+++++GFA Q G   +A +L   +     +PD VS  +++L+C     L  
Sbjct: 267 MLYKNVISWSALISGFA-QNGFAGNALQLVVDMQSFGYKPDSVSLVSVLLACSQVGFLKL 325

Query: 53  DDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYI 112
              V  +   +RL   D  S   +I  + +  +++ AR +F  +  ++S+SW+A+I+ Y 
Sbjct: 326 GKSVHGY-IVRRLHF-DCVSSTAVIDMYSKCGSLSFARTVFDQISFRDSISWNAIIASYG 383

Query: 113 ECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNA 172
             G                                      E+ L L   M    ++P+ 
Sbjct: 384 IHGS------------------------------------GEEALSLFLQMRETNVKPDH 407

Query: 173 SSLSSVLLGCSHLSSLQLGKQVHQLVFK----SPLCKDTTALTPLISMYCKCGDLEDACK 228
           ++ +S+L   SH   ++ G+    ++       P  K    +  L+S   + G +E+A +
Sbjct: 408 ATFASLLSAFSHSGLVEKGRYWFSIMVNEYKIQPSEKHYACMVDLLS---RAGRVEEAQE 464

Query: 229 LFLE-IQRKDVVTWNAMISGYAQHGK---GEKALR 259
           L    I    +  W A++SG   HGK   GE A +
Sbjct: 465 LIESMITEPGIAIWVALLSGCLNHGKFLIGEMAAK 499


>gi|225448223|ref|XP_002266190.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33990
           [Vitis vinifera]
          Length = 707

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 218/531 (41%), Positives = 306/531 (57%), Gaps = 52/531 (9%)

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKN----------------- 100
           A + F R+ I+D   W  MI+ + Q +   KA  LF  M E+                  
Sbjct: 186 AHEVFDRMLIRDVVCWTAMITLYEQAERPLKALMLFRKMQEEGFLGDEITAISVASAVGQ 245

Query: 101 --------SVSWSAMISGYI--------------ECGQLDKAVELFKVAPVKSVVAWTAM 138
                   SV   A+++G+I              +CG +++A  +F     ++ ++W +M
Sbjct: 246 LGDGRMAISVHGYAVLNGFIGDVSVGNSIVGMYAKCGNVERARLVFDRMEERNGISWNSM 305

Query: 139 ISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLV 198
           +S     GY +N    D L L   M      PN  +   ++  CS+L S  LG+++H  V
Sbjct: 306 LS-----GYTQNGRPTDALSLFNQMQASECDPNPVTALIMVSACSYLGSKHLGRKLHNFV 360

Query: 199 FKSPLCKDTTALTPLISMYCKCGDLEDACKLF--LEIQRKDVVTWNAMISGYAQHGKGEK 256
             S +  DTT    ++ MY KCGDL+ A ++F   E+  +DV +WN +ISGY  HG G++
Sbjct: 361 ISSKMDIDTTLRNAIMDMYMKCGDLDTAVEMFNNCELGERDVSSWNVLISGYGVHGHGKE 420

Query: 257 ALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPD--HYTC 314
           AL LF +M+ EG++P+ ITF ++L AC+HAGL+D G + F  M     ++ +P+  HY C
Sbjct: 421 ALELFSRMQVEGVEPNDITFTSILSACSHAGLIDEGRKCFADMTK---LSVRPEMKHYAC 477

Query: 315 MVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPAN 374
           MVD+LGRAG L EA  LIKK+P +P   ++G LL ACR+H   +L E AA NLF L P +
Sbjct: 478 MVDMLGRAGFLNEAFRLIKKIPSRPSDEVWGALLLACRIHGNTELGEIAANNLFQLEPEH 537

Query: 375 AAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPE 434
             G YV ++NIYAA  KW +V  +R +MK   + K   +S IE GT VH F + D+  P 
Sbjct: 538 -TGYYVLMSNIYAASNKWKEVEMVRQNMKSRGLKKPAAFSVIEFGTEVHGFHTADQSSPY 596

Query: 435 LVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGT 494
              ++ K++ L   MK+ GYVPDL   LH V  E KE LL +HSEKLA+AFG++K+  G 
Sbjct: 597 YREVYRKVESLAIEMKMVGYVPDLSCVLHDVEPEDKEHLLNYHSEKLAVAFGIMKMDQGM 656

Query: 495 PIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           PI+V KNLRVC DCH A K+IS+I  R+IIVRD  RFHHF+ G CSCGDYW
Sbjct: 657 PIQVTKNLRVCSDCHWAFKFISSIYGRKIIVRDGNRFHHFQGGRCSCGDYW 707



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 73/278 (26%), Positives = 137/278 (49%), Gaps = 23/278 (8%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLK---LLR 161
           +A++  Y +CG++  A E+F    ++ VV WTAMI+ Y +        AE  LK   L R
Sbjct: 171 AALVDMYAKCGEIGDAHEVFDRMLIRDVVCWTAMITLYEQ--------AERPLKALMLFR 222

Query: 162 MMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCG 221
            M   G   +  +  SV      L   ++   VH     +    D +    ++ MY KCG
Sbjct: 223 KMQEEGFLGDEITAISVASAVGQLGDGRMAISVHGYAVLNGFIGDVSVGNSIVGMYAKCG 282

Query: 222 DLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLL 281
           ++E A  +F  ++ ++ ++WN+M+SGY Q+G+   AL LF++M+     P+ +T + ++ 
Sbjct: 283 NVERARLVFDRMEERNGISWNSMLSGYTQNGRPTDALSLFNQMQASECDPNPVTALIMVS 342

Query: 282 ACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCM----VDLLGRAGKLVEAVDLIKKMPF 337
           AC++     LG ++    ++++ I++K D  T +    +D+  + G L  AV++      
Sbjct: 343 ACSY-----LGSKHLGRKLHNFVISSKMDIDTTLRNAIMDMYMKCGDLDTAVEMFNNCEL 397

Query: 338 KPQP-AIFGTLLSACRV--HKRLDLAEFAAMNLFNLNP 372
             +  + +  L+S   V  H +  L  F+ M +  + P
Sbjct: 398 GERDVSSWNVLISGYGVHGHGKEALELFSRMQVEGVEP 435



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 64/256 (25%), Positives = 122/256 (47%), Gaps = 16/256 (6%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNS--DDVVAAFDFFQRL-- 65
           NS++  +AK  G ++ A+ +FD++ + + +S+N MLS    N    D ++ F+  Q    
Sbjct: 272 NSIVGMYAKC-GNVERARLVFDRMEERNGISWNSMLSGYTQNGRPTDALSLFNQMQASEC 330

Query: 66  -PIKDTASWNTMISGFVQKKNMAKARDLFL--AMPEKNSVSWSAMISGYIECGQLDKAVE 122
            P   TA        ++  K++ +    F+  +  + ++   +A++  Y++CG LD AVE
Sbjct: 331 DPNPVTALIMVSACSYLGSKHLGRKLHNFVISSKMDIDTTLRNAIMDMYMKCGDLDTAVE 390

Query: 123 LFKVAPV--KSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLL 180
           +F    +  + V +W  +ISGY   G+      ++ L+L   M   G+ PN  + +S+L 
Sbjct: 391 MFNNCELGERDVSSWNVLISGYGVHGH-----GKEALELFSRMQVEGVEPNDITFTSILS 445

Query: 181 GCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI-QRKDVV 239
            CSH   +  G++    + K  +  +      ++ M  + G L +A +L  +I  R    
Sbjct: 446 ACSHAGLIDEGRKCFADMTKLSVRPEMKHYACMVDMLGRAGFLNEAFRLIKKIPSRPSDE 505

Query: 240 TWNAMISGYAQHGKGE 255
            W A++     HG  E
Sbjct: 506 VWGALLLACRIHGNTE 521



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/180 (29%), Positives = 80/180 (44%), Gaps = 3/180 (1%)

Query: 111 YIECGQLDKAVELFKVAPVKSVV---AWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLG 167
           Y + G L  A  LF            A  + +   M   Y     + + + L   M  +G
Sbjct: 68  YSKLGDLHSARTLFDHRHHHHHGHTQAPNSFLCNTMLRAYANAGRSYEAIDLYIYMQRMG 127

Query: 168 IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC 227
           +  N  +   VL  C+       G+ VH  V ++    D      L+ MY KCG++ DA 
Sbjct: 128 VGVNNFTYPFVLKVCASELGAVFGEVVHGQVVRTGFGSDLFVEAALVDMYAKCGEIGDAH 187

Query: 228 KLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG 287
           ++F  +  +DVV W AMI+ Y Q  +  KAL LF KM++EG   D IT +++  A    G
Sbjct: 188 EVFDRMLIRDVVCWTAMITLYEQAERPLKALMLFRKMQEEGFLGDEITAISVASAVGQLG 247


>gi|356510758|ref|XP_003524101.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Glycine max]
          Length = 854

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 213/527 (40%), Positives = 323/527 (61%), Gaps = 12/527 (2%)

Query: 23  LKDAQELFDKIPQPDVVSYNIMLSCI---LLNSDDVVAAFDFFQRLPIKDTASWNTMISG 79
           L++AQ LFDK+P+ +VVS+  M+S      LN   +      F+   + +  ++++++  
Sbjct: 336 LEEAQVLFDKMPERNVVSWTTMISAYSNAQLNDRAMRLLAFMFRDGVMPNMFTFSSVLRA 395

Query: 80  FVQKKNMAKARDLFLAMP-EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAM 138
             +  ++ +     + +  E +    SA+I  Y + G+L +A+++F+       V W ++
Sbjct: 396 CERLYDLKQLHSWIMKVGLESDVFVRSALIDVYSKMGELLEALKVFREMMTGDSVVWNSI 455

Query: 139 ISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLV 198
           I+ +      ++S  ++ L L + M  +G   + S+L+SVL  C+ LS L+LG+Q H  V
Sbjct: 456 IAAF-----AQHSDGDEALHLYKSMRRVGFPADQSTLTSVLRACTSLSLLELGRQAHVHV 510

Query: 199 FKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKAL 258
            K    +D      L+ MYCKCG LEDA  +F  + +KDV++W+ MI+G AQ+G   +AL
Sbjct: 511 LK--FDQDLILNNALLDMYCKCGSLEDAKFIFNRMAKKDVISWSTMIAGLAQNGFSMEAL 568

Query: 259 RLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDL 318
            LF+ MK +G KP+ IT + +L AC+HAGLV+ G  YF SM N YGI    +HY CM+DL
Sbjct: 569 NLFESMKVQGPKPNHITILGVLFACSHAGLVNEGWYYFRSMNNLYGIDPGREHYGCMLDL 628

Query: 319 LGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGC 378
           LGRA KL + V LI +M  +P    + TLL ACR  + +DLA +AA  +  L+P +  G 
Sbjct: 629 LGRAEKLDDMVKLIHEMNCEPDVVTWRTLLDACRARQNVDLATYAAKEILKLDPQDT-GA 687

Query: 379 YVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSI 438
           YV L+NIYA  K+W+DVA +R +MK+  + K PG SWIEV   +H F  GD+ HP++  I
Sbjct: 688 YVLLSNIYAISKRWNDVAEVRRTMKKRGIRKEPGCSWIEVNKQIHAFILGDKSHPQIDEI 747

Query: 439 HEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRV 498
           + +L +   R+  AGYVPD  F L  +  E +E  L +HSEKLAI FG++  P    IR+
Sbjct: 748 NRQLNQFICRLAGAGYVPDTNFVLQDLEGEQREDSLRYHSEKLAIVFGIMSFPKEKTIRI 807

Query: 499 FKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           +KNL++CGDCH+  K I+ +E+R I++RD  R+HHF+DG CSCGDYW
Sbjct: 808 WKNLKICGDCHKFAKLIAELEQRHIVIRDPIRYHHFQDGVCSCGDYW 854



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 54/205 (26%), Positives = 106/205 (51%), Gaps = 5/205 (2%)

Query: 156 GLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLIS 215
            + +L  M   G+  ++ + S ++  C    +++ GK+VH+ +F +     T     LI+
Sbjct: 269 AMHVLDSMERRGVWADSITYSELIKCCLAHGAVREGKRVHRHIFSNGYHPKTFLTNILIN 328

Query: 216 MYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSIT 275
           MY K   LE+A  LF ++  ++VV+W  MIS Y+     ++A+RL   M  +G+ P+  T
Sbjct: 329 MYVKFNLLEEAQVLFDKMPERNVVSWTTMISAYSNAQLNDRAMRLLAFMFRDGVMPNMFT 388

Query: 276 FVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335
           F ++L AC    L DL  +   S +   G+ +     + ++D+  + G+L+EA+ + ++M
Sbjct: 389 FSSVLRACER--LYDL--KQLHSWIMKVGLESDVFVRSALIDVYSKMGELLEALKVFREM 444

Query: 336 PFKPQPAIFGTLLSACRVHKRLDLA 360
                  ++ ++++A   H   D A
Sbjct: 445 -MTGDSVVWNSIIAAFAQHSDGDEA 468



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 54/245 (22%), Positives = 108/245 (44%), Gaps = 18/245 (7%)

Query: 11  SVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDT 70
           S L     + G+L +A ++F ++   D V +N +++    +SD   A   +     +   
Sbjct: 422 SALIDVYSKMGELLEALKVFREMMTGDSVVWNSIIAAFAQHSDGDEALHLYKSMRRVGFP 481

Query: 71  ASWNTMISGF-----VQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFK 125
           A  +T+ S       +    + +   + +   +++ +  +A++  Y +CG L+ A  +F 
Sbjct: 482 ADQSTLTSVLRACTSLSLLELGRQAHVHVLKFDQDLILNNALLDMYCKCGSLEDAKFIFN 541

Query: 126 VAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHL 185
               K V++W+ MI+     G  +N ++ + L L   M   G +PN  ++  VL  CSH 
Sbjct: 542 RMAKKDVISWSTMIA-----GLAQNGFSMEALNLFESMKVQGPKPNHITILGVLFACSHA 596

Query: 186 SSLQLG----KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ-RKDVVT 240
             +  G    + ++ L    P  +    +  L+    +   L+D  KL  E+    DVVT
Sbjct: 597 GLVNEGWYYFRSMNNLYGIDPGREHYGCMLDLLG---RAEKLDDMVKLIHEMNCEPDVVT 653

Query: 241 WNAMI 245
           W  ++
Sbjct: 654 WRTLL 658


>gi|225450565|ref|XP_002281942.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48910
           isoform 1 [Vitis vinifera]
          Length = 672

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 205/480 (42%), Positives = 294/480 (61%), Gaps = 13/480 (2%)

Query: 69  DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVS-WSAMISGYIECGQLDKAVELFKVA 127
           D   WN MI G+++   +  AR+LF  MP+++ +S W+AMISG+  CG ++ A E F   
Sbjct: 203 DAVCWNAMIDGYLRFGEVEAARELFEGMPDRSMISTWNAMISGFSRCGMVEVAREFFDEM 262

Query: 128 PVKSVVAWTAMISGYMKFG-YVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLS 186
             +  ++W+AMI GY++ G ++E       L++   M    IRP    L SVL  C++L 
Sbjct: 263 KERDEISWSAMIDGYIQEGCFME------ALEIFHQMQKEKIRPRKFVLPSVLSACANLG 316

Query: 187 SLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMIS 246
           +L  G+ +H    ++ +  D    T L+ MY KCG ++ A ++F ++  K+V +WNAMI 
Sbjct: 317 ALDQGRWIHTYAKRNSIQLDGVLGTSLVDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIG 376

Query: 247 GYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIA 306
           G A HG+ E A+ LF KM    + P+ ITFV +L AC H GLV  G+  F+SM  +YG+ 
Sbjct: 377 GLAMHGRAEDAIDLFSKMD---INPNEITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVE 433

Query: 307 AKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMN 366
            + +HY C+VDLLGRAG L EA  ++  +P +P PA++G LL ACR H  ++L E     
Sbjct: 434 PQIEHYGCIVDLLGRAGLLTEAEKVVSSIPTEPTPAVWGALLGACRKHGNVELGERVGKI 493

Query: 367 LFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGT-VVHEF 425
           L  L P N+ G Y  L+NIYA   +W++V  +R  MKE  +   PG S I++G   VH+F
Sbjct: 494 LLELEPQNS-GRYTLLSNIYAKAGRWEEVGEVRKLMKERGIKTTPGTSIIDLGRGEVHKF 552

Query: 426 RSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAF 485
             GD  HP++  I++ L ++++R+++ GY PD    L  + EE KE  +  HSEKLAI F
Sbjct: 553 IIGDGSHPQVKDIYQMLDKVKERLQMEGYEPDPSQVLFDIDEEEKETAVWQHSEKLAIGF 612

Query: 486 GLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           GLI    GT IR+ KNLRVC DCH ATK IS +  REIIVRD  R+HHF++G CSC D+W
Sbjct: 613 GLINTSPGTTIRIVKNLRVCEDCHSATKLISQVYNREIIVRDRIRYHHFRNGACSCKDFW 672



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 66/239 (27%), Positives = 112/239 (46%), Gaps = 17/239 (7%)

Query: 117 LDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLS 176
            + ++ +F      +V  W  MI        +EN+     + L   M+    RPN  +  
Sbjct: 87  FESSLRVFDFVRKPNVFLWNCMIKVC-----IENNEPFKAILLYYEMMVAHFRPNKYTYP 141

Query: 177 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK 236
           +VL  CS    +  G QVH  + K  L  D   L+  I MY   G L +A ++  +   +
Sbjct: 142 AVLKACSDAGVVAEGVQVHAHLVKHGLGGDGHILSSAIRMYASFGRLVEARRILDDKGGE 201

Query: 237 -DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQY 295
            D V WNAMI GY + G+ E A  LF+ M D  M     T+ A++   +  G+V++  ++
Sbjct: 202 VDAVCWNAMIDGYLRFGEVEAARELFEGMPDRSMIS---TWNAMISGFSRCGMVEVAREF 258

Query: 296 FDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP---FKPQPAIFGTLLSAC 351
           FD M     I+     ++ M+D   + G  +EA+++  +M     +P+  +  ++LSAC
Sbjct: 259 FDEMKERDEIS-----WSAMIDGYIQEGCFMEALEIFHQMQKEKIRPRKFVLPSVLSAC 312



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 74/155 (47%), Gaps = 6/155 (3%)

Query: 179 LLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCG-----DLEDACKLFLEI 233
           LL     +SL   KQ H L+ ++   +D+     L+  Y           E + ++F  +
Sbjct: 38  LLNTQCTTSLHHLKQAHALILRTGHLQDSYIAGSLVKSYANVSTNRYLSFESSLRVFDFV 97

Query: 234 QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGI 293
           ++ +V  WN MI    ++ +  KA+ L+ +M     +P+  T+ A+L AC+ AG+V  G+
Sbjct: 98  RKPNVFLWNCMIKVCIENNEPFKAILLYYEMMVAHFRPNKYTYPAVLKACSDAGVVAEGV 157

Query: 294 QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEA 328
           Q    +V  +G+       +  + +    G+LVEA
Sbjct: 158 QVHAHLVK-HGLGGDGHILSSAIRMYASFGRLVEA 191


>gi|356502293|ref|XP_003519954.1| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Glycine max]
          Length = 1047

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 215/548 (39%), Positives = 311/548 (56%), Gaps = 49/548 (8%)

Query: 41   YNIMLSCILLNSDDVVAAFD----FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM 96
            +N+ +S +L++    +   D     F+RL  KD  SW  MI+G+ Q +  A+A +LF  M
Sbjct: 506  FNVYVSSVLIDMYAKLGKLDHALKIFRRLKEKDVVSWTAMIAGYAQHEKFAEALNLFKEM 565

Query: 97   PEKNSVS---------------------------------------WSAMISGYIECGQL 117
             ++   S                                        +A++S Y  CG++
Sbjct: 566  QDQGIHSDNIGFASAISACAGIQALNQGQQIHAQACVSGYSDDLSVGNALVSLYARCGKV 625

Query: 118  DKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSS 177
              A   F     K  ++W ++ISG+ + G+      E+ L L   M   G   N+ +   
Sbjct: 626  RDAYFAFDKIFSKDNISWNSLISGFAQSGH-----CEEALSLFSQMSKAGQEINSFTFGP 680

Query: 178  VLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKD 237
             +   +++++++LGKQ+H ++ K+    +T     LI++Y KCG+++DA + F E+  K+
Sbjct: 681  AVSAAANVANVKLGKQIHAMIIKTGHDSETEVSNVLITLYAKCGNIDDAERQFFEMPEKN 740

Query: 238  VVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFD 297
             ++WNAM++GY+QHG G KAL LF+ MK  G+ P+ +TFV +L AC+H GLVD GI+YF 
Sbjct: 741  EISWNAMLTGYSQHGHGFKALSLFEDMKQLGVLPNHVTFVGVLSACSHVGLVDEGIKYFQ 800

Query: 298  SMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRL 357
            SM   +G+  KP+HY C+VDLLGR+G L  A   +++MP +P   +  TLLSAC VHK +
Sbjct: 801  SMREVHGLVPKPEHYACVVDLLGRSGLLSRARRFVEEMPIQPDAMVCRTLLSACIVHKNI 860

Query: 358  DLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIE 417
            D+ EFAA +L  L P ++A  YV L+N+YA   KW    R R  MK+  V K PG SWIE
Sbjct: 861  DIGEFAASHLLELEPKDSA-TYVLLSNMYAVTGKWGCRDRTRQMMKDRGVKKEPGRSWIE 919

Query: 418  VGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFH 477
            V   VH F +GD+ HP +  I+E L++L +     GY+P     L+      K    + H
Sbjct: 920  VNNSVHAFFAGDQKHPNVDKIYEYLRDLNELAAENGYIPQTNSLLNDAERRQKGPTQIIH 979

Query: 478  SEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDG 537
            SEKLAIAFGL+ +   TPI VFKNLRVCGDCH   KY+S I  R I+VRD+ RFHHFK G
Sbjct: 980  SEKLAIAFGLLSLSSSTPIHVFKNLRVCGDCHNWIKYVSKISDRVIVVRDSYRFHHFKGG 1039

Query: 538  TCSCGDYW 545
             CSC DYW
Sbjct: 1040 ICSCKDYW 1047



 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 97/329 (29%), Positives = 156/329 (47%), Gaps = 39/329 (11%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIP----QPDVVSYNIMLSCILLNSDDVVAAF 59
           +  V++NS+++G ++Q G    A ELF K+     +PD V+   +LS    +S   +   
Sbjct: 335 RDEVSYNSLISGLSQQ-GYSDKALELFKKMCLDCLKPDCVTVASLLSAC--SSVGALLVG 391

Query: 60  DFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDK 119
             F    IK   S + ++ G                          A++  Y++C  +  
Sbjct: 392 KQFHSYAIKAGMSSDIILEG--------------------------ALLDLYVKCSDIKT 425

Query: 120 AVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVL 179
           A E F     ++VV W  M+  Y   G ++N    +  K+   M   GI PN  +  S+L
Sbjct: 426 AHEFFLSTETENVVLWNVMLVAY---GLLDN--LNESFKIFTQMQMEGIEPNQFTYPSIL 480

Query: 180 LGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVV 239
             CS L ++ LG+Q+H  V K+    +    + LI MY K G L+ A K+F  ++ KDVV
Sbjct: 481 RTCSSLRAVDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKLGKLDHALKIFRRLKEKDVV 540

Query: 240 TWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSM 299
           +W AMI+GYAQH K  +AL LF +M+D+G+  D+I F + + AC     ++ G Q   + 
Sbjct: 541 SWTAMIAGYAQHEKFAEALNLFKEMQDQGIHSDNIGFASAISACAGIQALNQG-QQIHAQ 599

Query: 300 VNDYGIAAKPDHYTCMVDLLGRAGKLVEA 328
               G +        +V L  R GK+ +A
Sbjct: 600 ACVSGYSDDLSVGNALVSLYARCGKVRDA 628



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 102/448 (22%), Positives = 188/448 (41%), Gaps = 89/448 (19%)

Query: 54  DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMIS 109
           D+  A   F  +P++  + WN ++  FV  K   +   LF  M ++    +  +++ ++ 
Sbjct: 118 DLDGAVTVFDEMPVRPLSCWNKVLHRFVAGKMAGRVLGLFRRMLQEKVKPDERTYAGVLR 177

Query: 110 G------------------------------------YIECGQLDKAVELFKVAPVKSVV 133
           G                                    Y + G L+ A ++F     +  V
Sbjct: 178 GCGGGDVPFHCVEKIHARTITHGYENSLFVCNPLIDLYFKNGFLNSAKKVFDGLQKRDSV 237

Query: 134 AWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ 193
           +W AM+SG  + G       E+ + L   M   G+ P     SSVL  C+ +   ++G+Q
Sbjct: 238 SWVAMLSGLSQSG-----CEEEAVLLFCQMHTSGVYPTPYIFSSVLSACTKVEFYKVGEQ 292

Query: 194 VHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGK 253
           +H LV K     +T     L+++Y + G+   A ++F  + ++D V++N++ISG +Q G 
Sbjct: 293 LHGLVLKQGFSLETYVCNALVTLYSRLGNFIPAEQVFNAMLQRDEVSYNSLISGLSQQGY 352

Query: 254 GEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV------------- 300
            +KAL LF KM  + +KPD +T  +LL AC+  G + +G Q+    +             
Sbjct: 353 SDKALELFKKMCLDCLKPDCVTVASLLSACSSVGALLVGKQFHSYAIKAGMSSDIILEGA 412

Query: 301 --------------NDYGIAAKPDH---YTCMVDLLGRAGKLVEAVDLIKKMP---FKPQ 340
                         +++ ++ + ++   +  M+   G    L E+  +  +M     +P 
Sbjct: 413 LLDLYVKCSDIKTAHEFFLSTETENVVLWNVMLVAYGLLDNLNESFKIFTQMQMEGIEPN 472

Query: 341 PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQ--LANIYAAMKKWDDVARI 398
              + ++L  C   + +DL E     +  L        YV   L ++YA + K D   +I
Sbjct: 473 QFTYPSILRTCSSLRAVDLGEQIHTQV--LKTGFQFNVYVSSVLIDMYAKLGKLDHALKI 530

Query: 399 RLSMKENNVVKMPGYSWIEV--GTVVHE 424
              +KE +VV     SW  +  G   HE
Sbjct: 531 FRRLKEKDVV-----SWTAMIAGYAQHE 553



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 79/327 (24%), Positives = 156/327 (47%), Gaps = 13/327 (3%)

Query: 19  QRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNS--DDVVAAFDFFQRLPIKDTASWNTM 76
           + G L  A+++FD + + D VS+  MLS +  +   ++ V  F       +  T    + 
Sbjct: 217 KNGFLNSAKKVFDGLQKRDSVSWVAMLSGLSQSGCEEEAVLLFCQMHTSGVYPTPYIFSS 276

Query: 77  ISGFVQKKNMAKARDLFLAMPEKNSVSW-----SAMISGYIECGQLDKAVELFKVAPVKS 131
           +     K    K  +    +  K   S      +A+++ Y   G    A ++F     + 
Sbjct: 277 VLSACTKVEFYKVGEQLHGLVLKQGFSLETYVCNALVTLYSRLGNFIPAEQVFNAMLQRD 336

Query: 132 VVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLG 191
            V++ ++ISG  + GY     ++  L+L + M    ++P+  +++S+L  CS + +L +G
Sbjct: 337 EVSYNSLISGLSQQGY-----SDKALELFKKMCLDCLKPDCVTVASLLSACSSVGALLVG 391

Query: 192 KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQH 251
           KQ H    K+ +  D      L+ +Y KC D++ A + FL  + ++VV WN M+  Y   
Sbjct: 392 KQFHSYAIKAGMSSDIILEGALLDLYVKCSDIKTAHEFFLSTETENVVLWNVMLVAYGLL 451

Query: 252 GKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDH 311
               ++ ++F +M+ EG++P+  T+ ++L  C+    VDLG Q   + V   G       
Sbjct: 452 DNLNESFKIFTQMQMEGIEPNQFTYPSILRTCSSLRAVDLGEQ-IHTQVLKTGFQFNVYV 510

Query: 312 YTCMVDLLGRAGKLVEAVDLIKKMPFK 338
            + ++D+  + GKL  A+ + +++  K
Sbjct: 511 SSVLIDMYAKLGKLDHALKIFRRLKEK 537



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 64/226 (28%), Positives = 100/226 (44%), Gaps = 7/226 (3%)

Query: 111 YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRP 170
           YI  G LD AV +F   PV+ +  W  ++  +     V    A   L L R M+   ++P
Sbjct: 113 YIAFGDLDGAVTVFDEMPVRPLSCWNKVLHRF-----VAGKMAGRVLGLFRRMLQEKVKP 167

Query: 171 NASSLSSVLLGCSHLS-SLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 229
           +  + + VL GC          +++H                PLI +Y K G L  A K+
Sbjct: 168 DERTYAGVLRGCGGGDVPFHCVEKIHARTITHGYENSLFVCNPLIDLYFKNGFLNSAKKV 227

Query: 230 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLV 289
           F  +Q++D V+W AM+SG +Q G  E+A+ LF +M   G+ P    F ++L AC      
Sbjct: 228 FDGLQKRDSVSWVAMLSGLSQSGCEEEAVLLFCQMHTSGVYPTPYIFSSVLSACTKVEFY 287

Query: 290 DLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335
            +G Q    +V   G + +      +V L  R G  + A  +   M
Sbjct: 288 KVGEQ-LHGLVLKQGFSLETYVCNALVTLYSRLGNFIPAEQVFNAM 332



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 94/382 (24%), Positives = 143/382 (37%), Gaps = 119/382 (31%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIML------------------ 45
           K  V+W +++AG+A Q  K  +A  LF ++    + S NI                    
Sbjct: 537 KDVVSWTAMIAGYA-QHEKFAEALNLFKEMQDQGIHSDNIGFASAISACAGIQALNQGQQ 595

Query: 46  ----SCILLNSDD----------------VVAAFDFFQRLPIKDTASWNTMISGFVQKKN 85
               +C+   SDD                V  A+  F ++  KD  SWN++ISGF Q  +
Sbjct: 596 IHAQACVSGYSDDLSVGNALVSLYARCGKVRDAYFAFDKIFSKDNISWNSLISGFAQSGH 655

Query: 86  MAKARDLFLAMP----EKNSVSW-----------------------------------SA 106
             +A  LF  M     E NS ++                                   + 
Sbjct: 656 CEEALSLFSQMSKAGQEINSFTFGPAVSAAANVANVKLGKQIHAMIIKTGHDSETEVSNV 715

Query: 107 MISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGL 166
           +I+ Y +CG +D A   F   P K+ ++W AM++GY + G+         L L   M  L
Sbjct: 716 LITLYAKCGNIDDAERQFFEMPEKNEISWNAMLTGYSQHGH-----GFKALSLFEDMKQL 770

Query: 167 GIRPNASSLSSVLLGCSHLSSLQLG-------KQVHQLVFKS------------------ 201
           G+ PN  +   VL  CSH+  +  G       ++VH LV K                   
Sbjct: 771 GVLPNHVTFVGVLSACSHVGLVDEGIKYFQSMREVHGLVPKPEHYACVVDLLGRSGLLSR 830

Query: 202 --------PLCKDTTALTPLIS--MYCKCGDL-EDACKLFLEIQRKDVVTWNAMISGYAQ 250
                   P+  D      L+S  +  K  D+ E A    LE++ KD  T+  + + YA 
Sbjct: 831 ARRFVEEMPIQPDAMVCRTLLSACIVHKNIDIGEFAASHLLELEPKDSATYVLLSNMYAV 890

Query: 251 HGKGEKALRLFDKMKDEGMKPD 272
            GK     R    MKD G+K +
Sbjct: 891 TGKWGCRDRTRQMMKDRGVKKE 912



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 57/243 (23%), Positives = 98/243 (40%), Gaps = 34/243 (13%)

Query: 143 MKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSP 202
           + + Y  +    +G+  L +M   G+R N+ +   +L GC        G ++H  + K  
Sbjct: 39  LSYAYSNDEGEANGINFLHLMEERGVRANSQTYLWLLDGCLSSGWFSDGWKLHGKILKMG 98

Query: 203 LCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFD 262
            C +      L+ +Y   GDL+ A  +F E+  + +  WN ++  +       + L LF 
Sbjct: 99  FCAEVVLCERLMDLYIAFGDLDGAVTVFDEMPVRPLSCWNKVLHRFVAGKMAGRVLGLFR 158

Query: 263 KMKDEGMKPDSITFVALLLACN------------HAGLVDLGIQ---------------- 294
           +M  E +KPD  T+  +L  C             HA  +  G +                
Sbjct: 159 RMLQEKVKPDERTYAGVLRGCGGGDVPFHCVEKIHARTITHGYENSLFVCNPLIDLYFKN 218

Query: 295 -YFDSMVNDYGIAAKPD--HYTCMVDLLGRAGKLVEAVDLIKKMPFK---PQPAIFGTLL 348
            + +S    +    K D   +  M+  L ++G   EAV L  +M      P P IF ++L
Sbjct: 219 GFLNSAKKVFDGLQKRDSVSWVAMLSGLSQSGCEEEAVLLFCQMHTSGVYPTPYIFSSVL 278

Query: 349 SAC 351
           SAC
Sbjct: 279 SAC 281


>gi|302793743|ref|XP_002978636.1| hypothetical protein SELMODRAFT_109283 [Selaginella moellendorffii]
 gi|300153445|gb|EFJ20083.1| hypothetical protein SELMODRAFT_109283 [Selaginella moellendorffii]
          Length = 438

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 204/444 (45%), Positives = 277/444 (62%), Gaps = 6/444 (1%)

Query: 102 VSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLR 161
           +S   ++S + + G L  A  +F       +  W AMI+ Y++ G      +   ++L  
Sbjct: 1   MSLVTVLSAFAKVGNLHLAARIFARTDRSYIFPWNAMIAAYVQHGD-----SRQAIRLFD 55

Query: 162 MMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCG 221
            ++   I PN+ +L  VL  C+ L++L+ GK+VH +     +  +    T ++ MY KCG
Sbjct: 56  ELLARRIEPNSVTLMEVLDACASLAALRDGKRVHAIARDHGVDSEVAVATAIVDMYSKCG 115

Query: 222 DLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLL 281
            L++A + F  I+R D V+W AM++ +AQHG  ++AL  F +M+++G KP+ +TFV LL 
Sbjct: 116 CLDEAVEAFARIERHDTVSWTAMLAAFAQHGHIDRALATFQRMQEQGHKPNYVTFVHLLS 175

Query: 282 ACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQP 341
           AC+H GLV+ G +YFD M   YGIA    HY CMVDLLGRAG L EA D + +MP  P  
Sbjct: 176 ACSHKGLVEEGRKYFDLMTARYGIAPDAQHYACMVDLLGRAGYLDEAEDFLNRMPGAPHA 235

Query: 342 AIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLS 401
           A+  +LLSACR +K +D  E  A  +   +  + +  YV LA+IY A  KW++ ARIR  
Sbjct: 236 AVLKSLLSACRSYKDVDRGERIAKRMLE-SFWDESMPYVVLASIYRAAGKWEEAARIRSL 294

Query: 402 MKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFA 461
           M E  V K PG S IEV   V EF +GD  H ++  I  KL+EL   MK AGYVPD    
Sbjct: 295 MVERGVRKDPGRSAIEVEGRVFEFVAGDMSHVQMNPIRAKLQELSSAMKEAGYVPDTSLV 354

Query: 462 LHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKR 521
           LH V EE KEQ+LL+HSEKLA+AFGL+  P G+PIRV KNLRVC DCH A K ISAIE+R
Sbjct: 355 LHDVAEEEKEQVLLWHSEKLAVAFGLLNTPAGSPIRVIKNLRVCKDCHDAAKLISAIEQR 414

Query: 522 EIIVRDTTRFHHFKDGTCSCGDYW 545
            I+ RD +RFHHF++G CSCGDYW
Sbjct: 415 RIVFRDLSRFHHFENGVCSCGDYW 438



 Score = 47.0 bits (110), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 58/279 (20%), Positives = 116/279 (41%), Gaps = 24/279 (8%)

Query: 9   WNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPI- 67
           WN+++A +  Q G  + A  LFD++    +   ++ L  +L     + A  D  +   I 
Sbjct: 34  WNAMIAAYV-QHGDSRQAIRLFDELLARRIEPNSVTLMEVLDACASLAALRDGKRVHAIA 92

Query: 68  ------KDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAV 121
                  + A    ++  + +   + +A + F  +   ++VSW+AM++ + + G +D+A+
Sbjct: 93  RDHGVDSEVAVATAIVDMYSKCGCLDEAVEAFARIERHDTVSWTAMLAAFAQHGHIDRAL 152

Query: 122 ELFKVAPVK----SVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIG-LGIRPNASSLS 176
             F+    +    + V +  ++S     G V     E+G K   +M    GI P+A   +
Sbjct: 153 ATFQRMQEQGHKPNYVTFVHLLSACSHKGLV-----EEGRKYFDLMTARYGIAPDAQHYA 207

Query: 177 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDL---EDACKLFLEI 233
            ++        L    +    + + P       L  L+S      D+   E   K  LE 
Sbjct: 208 CMVDLLGRAGYLD---EAEDFLNRMPGAPHAAVLKSLLSACRSYKDVDRGERIAKRMLES 264

Query: 234 QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPD 272
              + + +  + S Y   GK E+A R+   M + G++ D
Sbjct: 265 FWDESMPYVVLASIYRAAGKWEEAARIRSLMVERGVRKD 303


>gi|225433487|ref|XP_002264838.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06140,
           mitochondrial [Vitis vinifera]
 gi|298205230|emb|CBI17289.3| unnamed protein product [Vitis vinifera]
          Length = 688

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 208/534 (38%), Positives = 319/534 (59%), Gaps = 16/534 (2%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G L++A ++F+++P  + V + +M+    LN  +    F+ F R+          ++ G 
Sbjct: 162 GSLEEAHKVFEEVPLKNSVIWGVMIKG-HLNFSEEFGVFELFSRMRRSGFELDPFVVEGL 220

Query: 81  VQKKN---MAKARDLFLAM------PEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKS 131
           +Q        K    F  +       + N    ++++  Y++CG LD A++LF+    + 
Sbjct: 221 IQACGNVYAGKEGKTFHGLCIKKNFIDSNFFLQTSLVDMYMKCGFLDFALKLFEEISYRD 280

Query: 132 VVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLG 191
           VV W+A+I+G+ +     N  A + + + R M+   + PN+ + +S++L CS L SL+ G
Sbjct: 281 VVVWSAIIAGFAR-----NGRALESISMFRQMLADSVTPNSVTFASIVLACSSLGSLKQG 335

Query: 192 KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQH 251
           + VH  + ++ +  D    T  I MY KCG +  A ++F +I  K+V +W+ MI+G+  H
Sbjct: 336 RSVHGYMIRNGVELDVKNYTSFIDMYAKCGCIVTAYRVFCQIPEKNVFSWSTMINGFGMH 395

Query: 252 GKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDH 311
           G   +AL LF +M+     P+S+TFV++L AC+H+G ++ G  +F SM  DYGI    +H
Sbjct: 396 GLCAEALNLFYEMRSVNQLPNSVTFVSVLSACSHSGRIEEGWSHFKSMSRDYGITPVEEH 455

Query: 312 YTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLN 371
           Y CMVDLLGRAGK+ EA+  I  MP +P  + +G LL ACR+H+R +LAE  A  L  L 
Sbjct: 456 YACMVDLLGRAGKIDEALSFINNMPTEPGASAWGALLGACRIHRRAELAEEVAKKLLPLE 515

Query: 372 PANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRV 431
            ++ +G YV L+NIYA +  W+ V + RL M E  + K+ G++ IE+   ++ F S DR 
Sbjct: 516 -SDQSGVYVMLSNIYADVGMWEMVKKTRLKMCEKGIHKIVGFTSIEIEEKLYLFSSEDRF 574

Query: 432 HPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVP 491
             +   I      L++RM+  GYVPDL F LH V +EVK+++L  HSEKLAI FGL+   
Sbjct: 575 AYKNTQIESLWNSLKERMRELGYVPDLRFVLHDVDDEVKQEVLCGHSEKLAIVFGLLNSG 634

Query: 492 LGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
            G PIR+ KN+RVCGDCH A+K+IS I +R+II+RD  RFHH +DG CSCGDYW
Sbjct: 635 EGMPIRITKNMRVCGDCHTASKFISLITRRKIIMRDVKRFHHVQDGVCSCGDYW 688



 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 70/277 (25%), Positives = 119/277 (42%), Gaps = 9/277 (3%)

Query: 66  PIKDTASWNTMISGFVQKKNMAKARDL---FLAMPEKNSVSWSAMISG-YIECGQLDKAV 121
           PI       T++S F   K +A    L    L      S+ +  MI G YI+ G L  A 
Sbjct: 8   PISSRNPTKTLLSLFRFTKTLASNHQLNAQILVNALHRSLLFGPMIFGAYIQLGSLHVAS 67

Query: 122 ELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLG 181
           + F     +++ +W  +++ + K     N    D L+L + M+  G   ++ +L   +  
Sbjct: 68  KAFNHITFENLHSWNTILASHSK-----NKCFYDVLQLFKRMLKEGKLVDSFNLVFAVKA 122

Query: 182 CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTW 241
           C  LS  Q  K  H L  K  L  D      L+++Y + G LE+A K+F E+  K+ V W
Sbjct: 123 CFGLSLFQGAKLFHSLAIKLRLEGDPYVAPALMNVYTELGSLEEAHKVFEEVPLKNSVIW 182

Query: 242 NAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN 301
             MI G+    +      LF +M+  G + D      L+ AC +      G  +    + 
Sbjct: 183 GVMIKGHLNFSEEFGVFELFSRMRRSGFELDPFVVEGLIQACGNVYAGKEGKTFHGLCIK 242

Query: 302 DYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 338
              I +     T +VD+  + G L  A+ L +++ ++
Sbjct: 243 KNFIDSNFFLQTSLVDMYMKCGFLDFALKLFEEISYR 279



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 78/164 (47%), Gaps = 10/164 (6%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDA----QELFDKIPQPDVVSYNIMLSCILLNS-DDV 55
           ++ +  V W++++AGFA+    L+      Q L D +    V   +I+L+C  L S    
Sbjct: 276 ISYRDVVVWSAIIAGFARNGRALESISMFRQMLADSVTPNSVTFASIVLACSSLGSLKQG 335

Query: 56  VAAFDFFQRLPIK-DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIEC 114
            +   +  R  ++ D  ++ + I  + +   +  A  +F  +PEKN  SWS MI+G+   
Sbjct: 336 RSVHGYMIRNGVELDVKNYTSFIDMYAKCGCIVTAYRVFCQIPEKNVFSWSTMINGFGMH 395

Query: 115 GQLDKAVELF----KVAPVKSVVAWTAMISGYMKFGYVENSWAE 154
           G   +A+ LF     V  + + V + +++S     G +E  W+ 
Sbjct: 396 GLCAEALNLFYEMRSVNQLPNSVTFVSVLSACSHSGRIEEGWSH 439


>gi|224112267|ref|XP_002316137.1| predicted protein [Populus trichocarpa]
 gi|222865177|gb|EEF02308.1| predicted protein [Populus trichocarpa]
          Length = 601

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 225/528 (42%), Positives = 308/528 (58%), Gaps = 14/528 (2%)

Query: 26  AQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP---IKDTASWNTMISGFVQ 82
           A +LF+ IPQPD+V +N M      ++  + A   F + L    + D  ++ +++   V 
Sbjct: 80  AHQLFEAIPQPDIVLFNSMFRGYSRSNAPLKAISLFIKALNYNLLPDDYTFPSLLKACVV 139

Query: 83  KKNMAKARDLF-LAMP---EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAM 138
            K   + + L  LA+     +N      +I+ Y  C  +D A  +F       VV++ A+
Sbjct: 140 AKAFQQGKQLHCLAIKLGLNENPYVCPTLINMYAGCNDVDGAQRVFDEILEPCVVSYNAI 199

Query: 139 ISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLV 198
           I+GY +     +S   + L L R +    ++PN  ++ SVL  C+ L +L LGK +H+ V
Sbjct: 200 ITGYAR-----SSRPNEALSLFRQLQARKLKPNDVTVLSVLSSCALLGALDLGKWIHEYV 254

Query: 199 FKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKAL 258
            K+ L K     T LI MY KCG L+ A  +F  +  +D   W+AMI  YA HG+G+  +
Sbjct: 255 KKNGLDKYVKVNTALIDMYAKCGSLDGAISVFESMSVRDTQAWSAMIVAYAMHGQGQDVM 314

Query: 259 RLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDL 318
            +F++M    ++PD ITF+ LL AC+H GLVD G +YF SM   YGI     HY CMVDL
Sbjct: 315 SMFEEMARAKVQPDEITFLGLLYACSHTGLVDEGFRYFYSMSEVYGIIPGIKHYGCMVDL 374

Query: 319 LGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGC 378
           LGRAG L EA   I ++P KP P ++ TLLS+C  H  L+LA+     +  L+ ++  G 
Sbjct: 375 LGRAGLLHEAYKFIDELPIKPTPILWRTLLSSCSSHGNLELAKQVMNQILELDDSH-GGD 433

Query: 379 YVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSI 438
           YV L+N+ A   KW+DV  +R  M     VK+PG S IEV  VVHEF SGD VH    ++
Sbjct: 434 YVILSNLCARAGKWEDVDTLRKLMIHKGAVKIPGCSSIEVDNVVHEFFSGDGVHYVSTAL 493

Query: 439 HEKLKELEKRMKLAGYVPDLEFALHA-VGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIR 497
           H  L EL K +K  GYVPD    +H  + +E KE  L +HSEKLAI+FGL+  P GT IR
Sbjct: 494 HRALDELVKELKSVGYVPDTSLVVHPDMEDEEKEITLRYHSEKLAISFGLLNTPPGTTIR 553

Query: 498 VFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           V KNLRVCGDCH A K IS++  REII+RD  RFHHFKDG CSCGDYW
Sbjct: 554 VVKNLRVCGDCHSAAKLISSLIDREIILRDVQRFHHFKDGKCSCGDYW 601



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 67/258 (25%), Positives = 118/258 (45%), Gaps = 37/258 (14%)

Query: 85  NMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMK 144
           +M  A  LF A+P+ + V +++M  GY       KA+ LF  A                 
Sbjct: 76  SMDYAHQLFEAIPQPDIVLFNSMFRGYSRSNAPLKAISLFIKA----------------- 118

Query: 145 FGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLC 204
                              +   + P+  +  S+L  C    + Q GKQ+H L  K  L 
Sbjct: 119 -------------------LNYNLLPDDYTFPSLLKACVVAKAFQQGKQLHCLAIKLGLN 159

Query: 205 KDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKM 264
           ++      LI+MY  C D++ A ++F EI    VV++NA+I+GYA+  +  +AL LF ++
Sbjct: 160 ENPYVCPTLINMYAGCNDVDGAQRVFDEILEPCVVSYNAIITGYARSSRPNEALSLFRQL 219

Query: 265 KDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGK 324
           +   +KP+ +T +++L +C   G +DLG ++    V   G+       T ++D+  + G 
Sbjct: 220 QARKLKPNDVTVLSVLSSCALLGALDLG-KWIHEYVKKNGLDKYVKVNTALIDMYAKCGS 278

Query: 325 LVEAVDLIKKMPFKPQPA 342
           L  A+ + + M  +   A
Sbjct: 279 LDGAISVFESMSVRDTQA 296



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 59/226 (26%), Positives = 96/226 (42%), Gaps = 39/226 (17%)

Query: 173 SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCK---CGDLEDACKL 229
           SSL S L  C+ L  L   KQ+     K+ L  D   LT LI+   +      ++ A +L
Sbjct: 27  SSLLSCLPKCTSLKEL---KQIQAFSIKTHLQNDLQILTKLINSCTQNPTTASMDYAHQL 83

Query: 230 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN----- 284
           F  I + D+V +N+M  GY++     KA+ LF K  +  + PD  TF +LL AC      
Sbjct: 84  FEAIPQPDIVLFNSMFRGYSRSNAPLKAISLFIKALNYNLLPDDYTFPSLLKACVVAKAF 143

Query: 285 ------HAGLVDLGIQ----YFDSMVNDYGIAAKPD---------------HYTCMVDLL 319
                 H   + LG+        +++N Y      D                Y  ++   
Sbjct: 144 QQGKQLHCLAIKLGLNENPYVCPTLINMYAGCNDVDGAQRVFDEILEPCVVSYNAIITGY 203

Query: 320 GRAGKLVEAVDLIKKMP---FKPQPAIFGTLLSACRVHKRLDLAEF 362
            R+ +  EA+ L +++     KP      ++LS+C +   LDL ++
Sbjct: 204 ARSSRPNEALSLFRQLQARKLKPNDVTVLSVLSSCALLGALDLGKW 249


>gi|449439005|ref|XP_004137278.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
 gi|449476583|ref|XP_004154777.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
          Length = 816

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 216/546 (39%), Positives = 325/546 (59%), Gaps = 18/546 (3%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP--- 66
           N+++  +AK  G+L+ A+ +F+++   D+VS+N +L+    N   V+A    + ++    
Sbjct: 279 NALINMYAK-FGELRSAETIFNQMKVRDIVSWNSLLAAFEQNKKPVIA-LGVYNKMHSIG 336

Query: 67  -IKDTASWNTMISGFVQKKNMAKARDLFLAMPEK-----NSVSWSAMISGYIECGQLDKA 120
            + D  +  ++ S   +  N   +R +   +  +     +    +A+I  Y + G +D A
Sbjct: 337 VVPDLLTLVSLASVAAELGNFLSSRSIHGFVTRRCWFLHDIALGNAIIDMYAKLGFIDSA 396

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLR-MMIGLGIRPNASSLSSVL 179
            ++F+  PVK V++W ++I+GY      +N  A + + +   M    G  PN  +  S+L
Sbjct: 397 RKVFEGLPVKDVISWNSLITGYS-----QNGLANEAIDVYSSMRYYSGAVPNQGTWVSIL 451

Query: 180 LGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVV 239
              S L +L+ G + H  + K+ L  D    T L+ MY KCG L DA  LF E+  +  V
Sbjct: 452 TAHSQLGALKQGMKAHGQLIKNFLYFDIFVSTCLVDMYGKCGKLADALSLFYEVPHQSSV 511

Query: 240 TWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSM 299
           +WNA+IS +  HG G KA++LF +M+ EG+KPD ITFV+LL AC+H+GLVD G   F  M
Sbjct: 512 SWNAIISCHGLHGYGLKAVKLFKEMQSEGVKPDHITFVSLLSACSHSGLVDEGQWCFQLM 571

Query: 300 VNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDL 359
              YGI     HY CMVDL GRAG L +A + +K MP +P  +++G LL ACR+H+ ++L
Sbjct: 572 QETYGIRPSLKHYGCMVDLFGRAGHLEKAFNFVKNMPVRPDVSVWGALLGACRIHENVEL 631

Query: 360 AEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVG 419
               + +L  +   N  G YV L+NIYA +  W+ V  +R   ++  + K PG+S IEV 
Sbjct: 632 VRTVSDHLLKVESENV-GYYVLLSNIYAKLGHWEGVDEVRSLARDRGLKKTPGWSSIEVD 690

Query: 420 TVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSE 479
             +  F +G++ HP+   I+ +L+ L  +MK  GYVPD  F L  V ++ KE +L  HSE
Sbjct: 691 KKIDVFYTGNQTHPKCEEIYSELRNLTAKMKSIGYVPDYNFVLQDVEDDEKENILTSHSE 750

Query: 480 KLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTC 539
           +LA+AFG+I  P  T +++FKNLRVCGDCH ATK+IS I +REIIVRD+ RFHHFKDG C
Sbjct: 751 RLAMAFGIISTPPKTTLQIFKNLRVCGDCHNATKFISKITEREIIVRDSNRFHHFKDGVC 810

Query: 540 SCGDYW 545
           SCGDYW
Sbjct: 811 SCGDYW 816



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 84/335 (25%), Positives = 153/335 (45%), Gaps = 67/335 (20%)

Query: 55  VVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWS----- 105
           V  A + F  + I+D  +WN MISGF     +A+A ++F  M  K    +SV+ S     
Sbjct: 190 VSLACNLFDNMMIRDIGTWNAMISGFYLNGKVAEALEVFDEMRFKSVSMDSVTISSLLPI 249

Query: 106 ------------------------------AMISGYIECGQLDKAVELFKVAPVKSVVAW 135
                                         A+I+ Y + G+L  A  +F    V+ +V+W
Sbjct: 250 CVQLDDIISGVLIHVYAIKLGLEFDLFVCNALINMYAKFGELRSAETIFNQMKVRDIVSW 309

Query: 136 TAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVH 195
            ++++ +      +N      L +   M  +G+ P+  +L S+    + L +    + +H
Sbjct: 310 NSLLAAFE-----QNKKPVIALGVYNKMHSIGVVPDLLTLVSLASVAAELGNFLSSRSIH 364

Query: 196 QLVFKSP-LCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKG 254
             V +      D      +I MY K G ++ A K+F  +  KDV++WN++I+GY+Q+G  
Sbjct: 365 GFVTRRCWFLHDIALGNAIIDMYAKLGFIDSARKVFEGLPVKDVISWNSLITGYSQNGLA 424

Query: 255 EKALRLFDKMK-DEGMKPDSITFVALLLACNHAGLVDLGIQ----------YFDSMVNDY 303
            +A+ ++  M+   G  P+  T+V++L A +  G +  G++          YFD  V+  
Sbjct: 425 NEAIDVYSSMRYYSGAVPNQGTWVSILTAHSQLGALKQGMKAHGQLIKNFLYFDIFVS-- 482

Query: 304 GIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 338
                    TC+VD+ G+ GKL +A+ L  ++P +
Sbjct: 483 ---------TCLVDMYGKCGKLADALSLFYEVPHQ 508



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 75/283 (26%), Positives = 132/283 (46%), Gaps = 19/283 (6%)

Query: 80  FVQKKNMAKARDLFLAMPEKN-SVSWSA-MISGYIECGQLDKAVELFKVAPVKSVVAWTA 137
           +  K ++AK     L +  K  S+  SA +I+ Y   G +  A   F     K V  W +
Sbjct: 52  YCTKVHLAKQLHALLVVSGKTQSIFLSAKLINRYAFLGDIPHARLTFDQIQTKDVYTWNS 111

Query: 138 MISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQL 197
           MIS Y + G+     A D       +    ++ +  +   V+  C +L     G++VH L
Sbjct: 112 MISAYARIGHFHA--AVDCFN--EFLSTSFLQSDHYTFPPVIRACGNLDD---GRKVHCL 164

Query: 198 VFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKA 257
           V K     D       I  Y + G +  AC LF  +  +D+ TWNAMISG+  +GK  +A
Sbjct: 165 VLKLGFECDVYIAASFIHFYSRFGFVSLACNLFDNMMIRDIGTWNAMISGFYLNGKVAEA 224

Query: 258 LRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGI--AAKPDHYTC- 314
           L +FD+M+ + +  DS+T  +LL  C     +  G+     +++ Y I    + D + C 
Sbjct: 225 LEVFDEMRFKSVSMDSVTISSLLPICVQLDDIISGV-----LIHVYAIKLGLEFDLFVCN 279

Query: 315 -MVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKR 356
            ++++  + G+L  A  +  +M  +   + + +LL+A   +K+
Sbjct: 280 ALINMYAKFGELRSAETIFNQMKVRDIVS-WNSLLAAFEQNKK 321



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 72/264 (27%), Positives = 125/264 (47%), Gaps = 10/264 (3%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCI--LLNSDDVVAAFDFFQRLPI--KDTASWNTM 76
           G +  A+  FD+I   DV ++N M+S    + +    V  F+ F        D  ++  +
Sbjct: 89  GDIPHARLTFDQIQTKDVYTWNSMISAYARIGHFHAAVDCFNEFLSTSFLQSDHYTFPPV 148

Query: 77  ISGFVQKKNMAKARDLFLAMPEKNSVSWSA-MISGYIECGQLDKAVELFKVAPVKSVVAW 135
           I       +  K   L L +  +  V  +A  I  Y   G +  A  LF    ++ +  W
Sbjct: 149 IRACGNLDDGRKVHCLVLKLGFECDVYIAASFIHFYSRFGFVSLACNLFDNMMIRDIGTW 208

Query: 136 TAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVH 195
            AMISG+    Y+    AE  L++   M    +  ++ ++SS+L  C  L  +  G  +H
Sbjct: 209 NAMISGF----YLNGKVAE-ALEVFDEMRFKSVSMDSVTISSLLPICVQLDDIISGVLIH 263

Query: 196 QLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGE 255
               K  L  D      LI+MY K G+L  A  +F +++ +D+V+WN++++ + Q+ K  
Sbjct: 264 VYAIKLGLEFDLFVCNALINMYAKFGELRSAETIFNQMKVRDIVSWNSLLAAFEQNKKPV 323

Query: 256 KALRLFDKMKDEGMKPDSITFVAL 279
            AL +++KM   G+ PD +T V+L
Sbjct: 324 IALGVYNKMHSIGVVPDLLTLVSL 347


>gi|297834086|ref|XP_002884925.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297330765|gb|EFH61184.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 694

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 210/545 (38%), Positives = 333/545 (61%), Gaps = 17/545 (3%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPD--VVSYNIMLSCILLNSDDVVA--AFDFFQRL 65
           N ++A +AK R +L  A+ +F+ +P P+  +VS+  ++S    N + V A   F   +++
Sbjct: 158 NGLIALYAKCR-RLGCARTVFEGLPLPERTIVSWTAIVSAYAQNGEPVEALEIFSQMRKM 216

Query: 66  PIK-DTASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMISGYIECGQLDKA 120
            +K D  +  ++++ F   +++ + R +  ++     E       ++ + Y +CGQ+  A
Sbjct: 217 DVKPDCVALVSVLNAFTCLQDLEQGRSIHASVMKMGLETEPDLLISLNTMYAKCGQVATA 276

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLL 180
             LF      +++ W AMISGY K     N +A+D + L   MI   +RP+  S++S + 
Sbjct: 277 KILFDKMKSPNLILWNAMISGYAK-----NGFAKDAIDLFHEMINKDVRPDTISITSAIS 331

Query: 181 GCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVT 240
            C+ + SL+  + + + V +S    D    + LI M+ KCG +E A  +F     +DVV 
Sbjct: 332 ACAQVGSLEQARWMDEYVSRSDYRDDVFISSALIDMFAKCGSVECARSVFDRTLDRDVVV 391

Query: 241 WNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV 300
           W+AMI GY  HG+  +A+ L+  M+ +G+ P+ +TF+ LL+ACNH+G+V  G  +F+ M 
Sbjct: 392 WSAMIVGYGLHGQAREAISLYRAMERDGVHPNDVTFLGLLIACNHSGMVREGWWFFNRMA 451

Query: 301 NDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLA 360
            D+ I  +  HY C++DLLGRAG L +A ++IK MP +P   ++G LLSAC+ H+ ++L 
Sbjct: 452 -DHKINPQQQHYACIIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHVELG 510

Query: 361 EFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGT 420
           ++AA  LF+++P+N  G YVQL+N+YAA + WD VA +R+ MKE  + K  G SW+EV  
Sbjct: 511 KYAAQQLFSIDPSNT-GHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVEVRG 569

Query: 421 VVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEK 480
            +  FR GD+ HP    I  +++ +E R+K  G+V + + +LH + +E  E+ L  HSE+
Sbjct: 570 RLEGFRVGDKSHPRYEEIERQVEWIESRLKEGGFVANKDASLHDLNDEEAEETLCSHSER 629

Query: 481 LAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCS 540
           + IA+GLI  P GT +R+ KNLR C +CH ATK IS +  REI+VRDT RFHHFKDG CS
Sbjct: 630 ITIAYGLISTPQGTTLRITKNLRACVNCHAATKLISKLVGREIVVRDTNRFHHFKDGVCS 689

Query: 541 CGDYW 545
           CGDYW
Sbjct: 690 CGDYW 694



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 66/238 (27%), Positives = 116/238 (48%), Gaps = 9/238 (3%)

Query: 115 GQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASS 174
           G +  A ++F   P   V  W A+I GY +     N+  +D L +   M    + P++ +
Sbjct: 67  GDITFARQVFDDLPRPQVFPWNAIIRGYSR-----NNHFQDALLMYSKMQLARVSPDSFT 121

Query: 175 LSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF--LE 232
              +L  C  LS LQ+G+ VH  VF+     D      LI++Y KC  L  A  +F  L 
Sbjct: 122 FPHLLKACGGLSHLQMGRFVHAQVFRLGFEADVFVQNGLIALYAKCRRLGCARTVFEGLP 181

Query: 233 IQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 292
           +  + +V+W A++S YAQ+G+  +AL +F +M+   +KPD +  V++L A      ++ G
Sbjct: 182 LPERTIVSWTAIVSAYAQNGEPVEALEIFSQMRKMDVKPDCVALVSVLNAFTCLQDLEQG 241

Query: 293 IQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSA 350
            +   + V   G+  +PD    +  +  + G++  A  L  KM   P   ++  ++S 
Sbjct: 242 -RSIHASVMKMGLETEPDLLISLNTMYAKCGQVATAKILFDKMK-SPNLILWNAMISG 297



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 60/257 (23%), Positives = 108/257 (42%), Gaps = 41/257 (15%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M     + WN++++G+AK  G  KDA +LF ++   DV                      
Sbjct: 283 MKSPNLILWNAMISGYAKN-GFAKDAIDLFHEMINKDVR--------------------- 320

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKAR--DLFLAMPEKNSVSW--SAMISGYIECGQ 116
                   DT S  + IS   Q  ++ +AR  D +++  +     +  SA+I  + +CG 
Sbjct: 321 -------PDTISITSAISACAQVGSLEQARWMDEYVSRSDYRDDVFISSALIDMFAKCGS 373

Query: 117 LDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLS 176
           ++ A  +F     + VV W+AMI GY   G      A + + L R M   G+ PN  +  
Sbjct: 374 VECARSVFDRTLDRDVVVWSAMIVGYGLHGQ-----AREAISLYRAMERDGVHPNDVTFL 428

Query: 177 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF--LEIQ 234
            +L+ C+H   ++ G      +    +         +I +  + G L+ A ++   + +Q
Sbjct: 429 GLLIACNHSGMVREGWWFFNRMADHKINPQQQHYACIIDLLGRAGHLDQAYEVIKCMPVQ 488

Query: 235 RKDVVTWNAMISGYAQH 251
              V  W A++S   +H
Sbjct: 489 -PGVTVWGALLSACKKH 504



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 81/171 (47%), Gaps = 5/171 (2%)

Query: 173 SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLE 232
           S  +S++   +H + L   +Q+H  +    L      +T LI      GD+  A ++F +
Sbjct: 22  SFYASLIDSSTHKAQL---RQIHARLLVLGLQFSGFLITKLIHASSSYGDITFARQVFDD 78

Query: 233 IQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 292
           + R  V  WNA+I GY+++   + AL ++ KM+   + PDS TF  LL AC     + +G
Sbjct: 79  LPRPQVFPWNAIIRGYSRNNHFQDALLMYSKMQLARVSPDSFTFPHLLKACGGLSHLQMG 138

Query: 293 IQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAI 343
            ++  + V   G  A       ++ L  +  +L  A  + + +P  P+  I
Sbjct: 139 -RFVHAQVFRLGFEADVFVQNGLIALYAKCRRLGCARTVFEGLPL-PERTI 187


>gi|357450795|ref|XP_003595674.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355484722|gb|AES65925.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 975

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 233/623 (37%), Positives = 331/623 (53%), Gaps = 86/623 (13%)

Query: 2   NVKTTVNWNSVLAGFAKQRGKLKDAQELF------DKIPQPDVVSYNIMLSCI------- 48
           N K  ++WNS++ G++K R   + A EL       DK+   +V   N++  C        
Sbjct: 360 NEKNVISWNSMIGGYSKDR-DFRGAFELLRKMQMEDKVKVNEVTLLNVLPVCEEEIQFLK 418

Query: 49  ------------LLNSDDVVA---------------AFDFFQRLPIKDTASWNTMISGFV 81
                        + SD++VA               A   F  +  K  +SWN +I G V
Sbjct: 419 LKEIHGYALRHGFIQSDELVANAFVAGYAKCGSLHYAEGVFCGMESKMVSSWNALIGGHV 478

Query: 82  QKKNMAKARDLFLAMP---------------------------------------EKNSV 102
           Q     KA DL+L M                                        E +  
Sbjct: 479 QNGFPRKALDLYLLMRGSGLEPDLFTIASLLSACARLKSLSCGKEIHGSMLRNGFELDEF 538

Query: 103 SWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRM 162
              +++S Y++CG++  A   F     K++V W  MI+G+      +N +  D L +   
Sbjct: 539 ICISLVSLYVQCGKILLAKLFFDNMEEKNLVCWNTMINGFS-----QNEFPFDALDMFHQ 593

Query: 163 MIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGD 222
           M+   I P+  S+   L  CS +S+L+LGK++H    KS L + +     LI MY KCG 
Sbjct: 594 MLSSKIWPDEISIIGALGACSQVSALRLGKELHCFAVKSHLTEHSFVTCSLIDMYAKCGC 653

Query: 223 LEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA 282
           +E +  +F  +  K  VTWN +I+GY  HG G KA+ LF  M++ G +PDS+TF+ALL A
Sbjct: 654 MEQSQNIFDRVHLKGEVTWNVLITGYGIHGHGRKAIELFKSMQNAGFRPDSVTFIALLTA 713

Query: 283 CNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPA 342
           CNHAGLV  G++Y   M + +GI  K +HY C+VD+LGRAG+L EA++L+ ++P KP   
Sbjct: 714 CNHAGLVAEGLEYLGQMQSLFGIKPKLEHYACVVDMLGRAGRLNEALELVNELPDKPDSR 773

Query: 343 IFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSM 402
           I+ +LLS+CR ++ LD+ E  A  L  L P  A   YV ++N YA + KWD+V ++R  M
Sbjct: 774 IWSSLLSSCRNYRDLDIGEKVANKLLELGPDKAEN-YVLISNFYARLGKWDEVRKMRQRM 832

Query: 403 KENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFAL 462
           KE  + K  G SWIE+G  V  F  GD    + + I +   ELEK++   GY PD    L
Sbjct: 833 KEIGLQKDAGCSWIEIGGKVSRFLVGDESLLQSMKIQQTWIELEKKINKIGYKPDTSCVL 892

Query: 463 HAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKRE 522
           H + E+ K ++L  HSEKLAI+FGL+    GT +RV KNLR+C DCH A K +S I+KRE
Sbjct: 893 HELEEDEKIKILRNHSEKLAISFGLLNTAKGTTLRVCKNLRICVDCHNAIKLVSKIDKRE 952

Query: 523 IIVRDTTRFHHFKDGTCSCGDYW 545
           IIVRD  RFHHFK+G CSCGDYW
Sbjct: 953 IIVRDNKRFHHFKNGFCSCGDYW 975



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 94/335 (28%), Positives = 164/335 (48%), Gaps = 29/335 (8%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYN-IMLSCILLNSDDVVAAFDFFQRLP-- 66
           N+++A + K  G ++ A ++FDK+PQ ++VS+N +M +C  L +     ++  F+ L   
Sbjct: 235 NALIAMYGK-FGFVESAVKVFDKMPQRNLVSWNSVMYAC--LENGVFEESYGLFKGLLNG 291

Query: 67  ----IKDTASWNTMI-----SGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQL 117
               + D A+  T+I      G V+   +     L L +  +  V+ S+++  Y +CG L
Sbjct: 292 DEGLMPDVATMVTVIPLCARQGEVRLGMVFHGLALKLGLCGELKVN-SSLLDMYSKCGYL 350

Query: 118 DKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLR-MMIGLGIRPNASSLS 176
            +A  LF     K+V++W +MI GY K     +       +LLR M +   ++ N  +L 
Sbjct: 351 CEARVLFDTNE-KNVISWNSMIGGYSK-----DRDFRGAFELLRKMQMEDKVKVNEVTLL 404

Query: 177 SVLLGCSHLSSLQLGKQVHQLVFKSPLCK-DTTALTPLISMYCKCGDLEDACKLFLEIQR 235
           +VL  C         K++H    +    + D       ++ Y KCG L  A  +F  ++ 
Sbjct: 405 NVLPVCEEEIQFLKLKEIHGYALRHGFIQSDELVANAFVAGYAKCGSLHYAEGVFCGMES 464

Query: 236 KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQY 295
           K V +WNA+I G+ Q+G   KAL L+  M+  G++PD  T  +LL AC     +  G + 
Sbjct: 465 KMVSSWNALIGGHVQNGFPRKALDLYLLMRGSGLEPDLFTIASLLSACARLKSLSCGKEI 524

Query: 296 FDSMVNDYGIAAKPDHYTC--MVDLLGRAGKLVEA 328
             SM+ +     + D + C  +V L  + GK++ A
Sbjct: 525 HGSMLRN---GFELDEFICISLVSLYVQCGKILLA 556



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 74/296 (25%), Positives = 142/296 (47%), Gaps = 22/296 (7%)

Query: 49  LLNSDDVVAAFDFFQRLPIKDTASWNTMISGFV--------QKKNMAKARDL--FLAMP- 97
           L N+ ++  AF+F Q       +S N+     +        + KN+   R +  F++   
Sbjct: 64  LCNTGNLNQAFNFLQSNLNDVVSSSNSKPKQLIGLLLQLCGEYKNIEIGRKIHNFISTSP 123

Query: 98  --EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAED 155
             + + V  + +++ Y  C     +  +F  +  K++  W A++SGY++     NS   D
Sbjct: 124 HFQNDVVLITRLVTMYSICDSPYDSCLVFNASRRKNLFLWNALLSGYLR-----NSLFRD 178

Query: 156 GLKLLRMMIGLG-IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLI 214
            + +   MI L    P+  +L  V+  C  +  ++LG+ VH    K+ +  D      LI
Sbjct: 179 AVFVFVEMISLTEFVPDNFTLPCVIKACVGVYDVRLGEAVHGFALKTKVLSDVFVGNALI 238

Query: 215 SMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKM--KDEGMKPD 272
           +MY K G +E A K+F ++ ++++V+WN+++    ++G  E++  LF  +   DEG+ PD
Sbjct: 239 AMYGKFGFVESAVKVFDKMPQRNLVSWNSVMYACLENGVFEESYGLFKGLLNGDEGLMPD 298

Query: 273 SITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEA 328
             T V ++  C   G V LG+  F  +    G+  +    + ++D+  + G L EA
Sbjct: 299 VATMVTVIPLCARQGEVRLGM-VFHGLALKLGLCGELKVNSSLLDMYSKCGYLCEA 353



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 68/285 (23%), Positives = 132/285 (46%), Gaps = 47/285 (16%)

Query: 9   WNSVLAGFAKQRGKLKDAQELF-DKIPQPDVVSYNIMLSCIL--------LNSDDVVAAF 59
           WN++L+G+ +     +DA  +F + I   + V  N  L C++        +   + V  F
Sbjct: 163 WNALLSGYLRN-SLFRDAVFVFVEMISLTEFVPDNFTLPCVIKACVGVYDVRLGEAVHGF 221

Query: 60  DFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDK 119
               ++ + D    N +I+ + +   +  A  +F  MP++N VSW++++   +E G  ++
Sbjct: 222 ALKTKV-LSDVFVGNALIAMYGKFGFVESAVKVFDKMPQRNLVSWNSVMYACLENGVFEE 280

Query: 120 AVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVL 179
           +  LFK            +++G                         G+ P+ +++ +V+
Sbjct: 281 SYGLFK-----------GLLNG-----------------------DEGLMPDVATMVTVI 306

Query: 180 LGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVV 239
             C+    ++LG   H L  K  LC +    + L+ MY KCG L +A  LF +   K+V+
Sbjct: 307 PLCARQGEVRLGMVFHGLALKLGLCGELKVNSSLLDMYSKCGYLCEARVLF-DTNEKNVI 365

Query: 240 TWNAMISGYAQHGKGEKALRLFDKMK-DEGMKPDSITFVALLLAC 283
           +WN+MI GY++      A  L  KM+ ++ +K + +T + +L  C
Sbjct: 366 SWNSMIGGYSKDRDFRGAFELLRKMQMEDKVKVNEVTLLNVLPVC 410



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 81/161 (50%), Gaps = 11/161 (6%)

Query: 182 CSHLSSLQLGKQVHQLVFKSP-LCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVT 240
           C    ++++G+++H  +  SP    D   +T L++MY  C    D+C +F   +RK++  
Sbjct: 103 CGEYKNIEIGRKIHNFISTSPHFQNDVVLITRLVTMYSICDSPYDSCLVFNASRRKNLFL 162

Query: 241 WNAMISGYAQHGKGEKALRLFDKMKD-EGMKPDSITFVALLLACNHAGLVDLGIQYFDSM 299
           WNA++SGY ++     A+ +F +M       PD+ T   ++ AC   G+ D+ +      
Sbjct: 163 WNALLSGYLRNSLFRDAVFVFVEMISLTEFVPDNFTLPCVIKAC--VGVYDVRL---GEA 217

Query: 300 VNDYGIAAK--PDHY--TCMVDLLGRAGKLVEAVDLIKKMP 336
           V+ + +  K   D +    ++ + G+ G +  AV +  KMP
Sbjct: 218 VHGFALKTKVLSDVFVGNALIAMYGKFGFVESAVKVFDKMP 258



 Score = 47.4 bits (111), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 66/288 (22%), Positives = 126/288 (43%), Gaps = 24/288 (8%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQ----PDVVS-YNIMLSCILLNSDDV 55
           M  K  V WN+++ GF++      DA ++F ++      PD +S    + +C  +++  +
Sbjct: 563 MEEKNLVCWNTMINGFSQNEFPF-DALDMFHQMLSSKIWPDEISIIGALGACSQVSALRL 621

Query: 56  VAAFDFFQRLPIKDTASWNT--MISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE 113
                 F         S+ T  +I  + +   M +++++F  +  K  V+W+ +I+GY  
Sbjct: 622 GKELHCFAVKSHLTEHSFVTCSLIDMYAKCGCMEQSQNIFDRVHLKGEVTWNVLITGYGI 681

Query: 114 CGQLDKAVELFKVAPVKSV----VAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGL-GI 168
            G   KA+ELFK           V + A+++     G V      +GL+ L  M  L GI
Sbjct: 682 HGHGRKAIELFKSMQNAGFRPDSVTFIALLTACNHAGLV-----AEGLEYLGQMQSLFGI 736

Query: 169 RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDL---ED 225
           +P     + V+        L    +  +LV + P   D+   + L+S      DL   E 
Sbjct: 737 KPKLEHYACVVDMLGRAGRLN---EALELVNELPDKPDSRIWSSLLSSCRNYRDLDIGEK 793

Query: 226 ACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDS 273
                LE+       +  + + YA+ GK ++  ++  +MK+ G++ D+
Sbjct: 794 VANKLLELGPDKAENYVLISNFYARLGKWDEVRKMRQRMKEIGLQKDA 841


>gi|356565531|ref|XP_003550993.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Glycine max]
          Length = 628

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 211/472 (44%), Positives = 296/472 (62%), Gaps = 3/472 (0%)

Query: 76  MISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAW 135
           ++  + +  ++A A+ LF AMPE++ VS++AM++ Y + G L +A  LF+   +K VV W
Sbjct: 158 LVDAYARGGDVASAQKLFDAMPERSLVSYTAMLTCYAKHGMLPEARVLFEGMGMKDVVCW 217

Query: 136 TAMISGYMKFGYVENS--WAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ 193
             MI GY + G    +  +    + ++       +RPN  ++ +VL  C  + +L+ GK 
Sbjct: 218 NVMIDGYAQHGCPNEALVFFRKMMMMMGGNGNGKVRPNEITVVAVLSSCGQVGALECGKW 277

Query: 194 VHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGK 253
           VH  V  + +  +    T L+ MYCKCG LEDA K+F  ++ KDVV WN+MI GY  HG 
Sbjct: 278 VHSYVENNGIKVNVRVGTALVDMYCKCGSLEDARKVFDVMEGKDVVAWNSMIMGYGIHGF 337

Query: 254 GEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYT 313
            ++AL+LF +M   G+KP  ITFVA+L AC HAGLV  G + FDSM + YG+  K +HY 
Sbjct: 338 SDEALQLFHEMCCIGVKPSDITFVAVLTACAHAGLVSKGWEVFDSMKDGYGMEPKVEHYG 397

Query: 314 CMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPA 373
           CMV+LLGRAG++ EA DL++ M  +P P ++GTLL ACR+H  + L E  A  L + N  
Sbjct: 398 CMVNLLGRAGRMQEAYDLVRSMEVEPDPVLWGTLLWACRIHSNVSLGEEIAEILVS-NGL 456

Query: 374 NAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHP 433
            ++G YV L+N+YAA + W  VA++R  MK + V K PG S IEV   VHEF +GDR HP
Sbjct: 457 ASSGTYVLLSNMYAAARNWVGVAKVRSMMKGSGVEKEPGCSSIEVKNRVHEFVAGDRRHP 516

Query: 434 ELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLG 493
               I+  L+++   +K   Y P  +  LH +GE+ KEQ L  HSEKLA+AFGLI    G
Sbjct: 517 RSKDIYSMLEKMNGWLKERHYTPKTDAVLHDIGEQEKEQSLEVHSEKLALAFGLISTSPG 576

Query: 494 TPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
             I++ KNLRVC DCH   K +S I  R+II+RD  RFHHF++G+CSC DYW
Sbjct: 577 AAIKIVKNLRVCLDCHAVMKIMSKISGRKIIMRDRNRFHHFENGSCSCRDYW 628



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 83/325 (25%), Positives = 135/325 (41%), Gaps = 53/325 (16%)

Query: 111 YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRP 170
           Y   G L  +V LF   P  +V  WT +I+ +  F    ++     L     M+   I+P
Sbjct: 65  YASLGHLHHSVTLFHRTPNPNVFLWTHIINAHAHFDLFHHA-----LSYYSQMLTHPIQP 119

Query: 171 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 230
           NA +LSS+L  C+    L   + VH    K  L       T L+  Y + GD+  A KLF
Sbjct: 120 NAFTLSSLLKACT----LHPARAVHSHAIKFGLSSHLYVSTGLVDAYARGGDVASAQKLF 175

Query: 231 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFD--KMKD---------------------- 266
             +  + +V++ AM++ YA+HG   +A  LF+   MKD                      
Sbjct: 176 DAMPERSLVSYTAMLTCYAKHGMLPEARVLFEGMGMKDVVCWNVMIDGYAQHGCPNEALV 235

Query: 267 --------------EGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY 312
                           ++P+ IT VA+L +C   G ++ G ++  S V + GI       
Sbjct: 236 FFRKMMMMMGGNGNGKVRPNEITVVAVLSSCGQVGALECG-KWVHSYVENNGIKVNVRVG 294

Query: 313 TCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLD--LAEFAAMNLFNL 370
           T +VD+  + G L +A  +   M  K   A + +++    +H   D  L  F  M    +
Sbjct: 295 TALVDMYCKCGSLEDARKVFDVMEGKDVVA-WNSMIMGYGIHGFSDEALQLFHEMCCIGV 353

Query: 371 NPANAAGCYVQLANIYAAM--KKWD 393
            P++     V  A  +A +  K W+
Sbjct: 354 KPSDITFVAVLTACAHAGLVSKGWE 378



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 80/333 (24%), Positives = 134/333 (40%), Gaps = 86/333 (25%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G +  AQ+LFD +P+  +VSY  ML+C       +  A   F+ + +KD   WN MI G+
Sbjct: 166 GDVASAQKLFDAMPERSLVSYTAMLTC-YAKHGMLPEARVLFEGMGMKDVVCWNVMIDGY 224

Query: 81  VQKKNMAKARDLFL-----------------------------------------AMPEK 99
            Q     +A   F                                          +  E 
Sbjct: 225 AQHGCPNEALVFFRKMMMMMGGNGNGKVRPNEITVVAVLSSCGQVGALECGKWVHSYVEN 284

Query: 100 NSVS-----WSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAE 154
           N +       +A++  Y +CG L+ A ++F V   K VVAW +MI GY   G+     ++
Sbjct: 285 NGIKVNVRVGTALVDMYCKCGSLEDARKVFDVMEGKDVVAWNSMIMGYGIHGF-----SD 339

Query: 155 DGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLI 214
           + L+L   M  +G++P+  +  +VL  C+H   +  G +    VF S   KD   + P +
Sbjct: 340 EALQLFHEMCCIGVKPSDITFVAVLTACAHAGLVSKGWE----VFDS--MKDGYGMEPKV 393

Query: 215 SMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSI 274
             Y                          M++   + G+ ++A  L   M+ E   PD +
Sbjct: 394 EHY------------------------GCMVNLLGRAGRMQEAYDLVRSMEVE---PDPV 426

Query: 275 TFVALLLACNHAGLVDLGIQYFDSMVNDYGIAA 307
            +  LL AC     V LG +  + +V++ G+A+
Sbjct: 427 LWGTLLWACRIHSNVSLGEEIAEILVSN-GLAS 458


>gi|224120094|ref|XP_002331135.1| predicted protein [Populus trichocarpa]
 gi|222872863|gb|EEF09994.1| predicted protein [Populus trichocarpa]
          Length = 799

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 231/627 (36%), Positives = 336/627 (53%), Gaps = 89/627 (14%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCIL-----LNS--- 52
           M+ +  V WNS+++GF+   G   +   L  ++ Q DV   +  +  +L     +NS   
Sbjct: 180 MHKRDVVAWNSMISGFSLHEGSYDEVARLLVQM-QNDVSPNSSTIVGVLPAVAQVNSLRH 238

Query: 53  --------------DDVVAA------------FDFFQRL-----PIKDTASWNTMISGFV 81
                          DVV               D+ +R+      +K+  +W+ M+  +V
Sbjct: 239 GKEIHGFCVRRGFVGDVVVGTGILDVYGKCQCIDYARRIFDMMGIVKNEVTWSAMVGAYV 298

Query: 82  QKKNMAKARDLF--LAMPEKNSVSWSA--------------------------------- 106
               M +A +LF  L M + + +  SA                                 
Sbjct: 299 VCDFMREALELFCQLLMLKDDVIVLSAVTLATVIRVCANLTDLSTGTCLHCYAIKSGFVL 358

Query: 107 -------MISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKL 159
                  ++S Y +CG ++ A+  F    ++  V++TA+ISGY     V+N  +E+GL++
Sbjct: 359 DLMVGNTLLSMYAKCGIINGAMRFFNEMDLRDAVSFTAIISGY-----VQNGNSEEGLRM 413

Query: 160 LRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCK 219
              M   GI P  ++L+SVL  C+HL+ L  G   H          DT     LI MY K
Sbjct: 414 FLEMQLSGINPEKATLASVLPACAHLAGLHYGSCSHCYAIICGFTADTMICNALIDMYAK 473

Query: 220 CGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVAL 279
           CG ++ A K+F  + ++ +V+WN MI  Y  HG G +AL LFD M+ EG+KPD +TF+ L
Sbjct: 474 CGKIDTARKVFDRMHKRGIVSWNTMIIAYGIHGIGLEALLLFDNMQSEGLKPDDVTFICL 533

Query: 280 LLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKP 339
           + AC+H+GLV  G  +F++M  D+GI  + +HY CMVDLL RAG   E    I+KMP +P
Sbjct: 534 ISACSHSGLVAEGKYWFNAMTQDFGIIPRMEHYACMVDLLSRAGLFKEVHSFIEKMPLEP 593

Query: 340 QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIR 399
              ++G LLSACRV+K ++L E  +  +  L P  + G +V L+N+Y+A+ +WDD A++R
Sbjct: 594 DVRVWGALLSACRVYKNVELGEGVSKKIQKLGP-ESTGNFVLLSNMYSAVGRWDDAAQVR 652

Query: 400 LSMKENNVVKMPGYSWIEVGTVVHEFRSGD-RVHPELVSIHEKLKELEKRMKLAGYVPDL 458
            + KE    K PG SWIE+  VVH F  G  R HP+L  I  KL EL   MK  GY  + 
Sbjct: 653 FTQKEQGFEKSPGCSWIEISGVVHTFLGGGYRSHPQLTQISNKLDELLVEMKRLGYQAES 712

Query: 459 EFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAI 518
            +    V EE KE++LL+HSEKLAIAFG++ +     I V KNLRVCGDCH A K+IS +
Sbjct: 713 SYVFQDVEEEEKERVLLYHSEKLAIAFGILSLSPDKHIIVTKNLRVCGDCHTAIKFISLV 772

Query: 519 EKREIIVRDTTRFHHFKDGTCSCGDYW 545
            KR+I VRD +RFHHFKDG C+CGD+W
Sbjct: 773 TKRDITVRDASRFHHFKDGICNCGDFW 799



 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 98/355 (27%), Positives = 179/355 (50%), Gaps = 35/355 (9%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           + +++ V  ++ L  F  + G L DA+E+FDK+ + DVV++N M+S   L+      ++D
Sbjct: 148 LRLESNVYVSTALVDFYAKCGCLDDAKEVFDKMHKRDVVAWNSMISGFSLHE----GSYD 203

Query: 61  FFQRLPIK---DTASWNTMISGFV----QKKNMAKARDLFLAMPEK----NSVSWSAMIS 109
              RL ++   D +  ++ I G +    Q  ++   +++      +    + V  + ++ 
Sbjct: 204 EVARLLVQMQNDVSPNSSTIVGVLPAVAQVNSLRHGKEIHGFCVRRGFVGDVVVGTGILD 263

Query: 110 GYIECGQLDKAVELFKV-APVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLG- 167
            Y +C  +D A  +F +   VK+ V W+AM+  Y     V   +  + L+L   ++ L  
Sbjct: 264 VYGKCQCIDYARRIFDMMGIVKNEVTWSAMVGAY-----VVCDFMREALELFCQLLMLKD 318

Query: 168 --IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLED 225
             I  +A +L++V+  C++L+ L  G  +H    KS    D      L+SMY KCG +  
Sbjct: 319 DVIVLSAVTLATVIRVCANLTDLSTGTCLHCYAIKSGFVLDLMVGNTLLSMYAKCGIING 378

Query: 226 ACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNH 285
           A + F E+  +D V++ A+ISGY Q+G  E+ LR+F +M+  G+ P+  T  ++L AC H
Sbjct: 379 AMRFFNEMDLRDAVSFTAIISGYVQNGNSEEGLRMFLEMQLSGINPEKATLASVLPACAH 438

Query: 286 -AGLVDLGIQYFDSMVNDYGIAA--KPDHYTC--MVDLLGRAGKLVEAVDLIKKM 335
            AGL      ++ S  + Y I      D   C  ++D+  + GK+  A  +  +M
Sbjct: 439 LAGL------HYGSCSHCYAIICGFTADTMICNALIDMYAKCGKIDTARKVFDRM 487



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 61/184 (33%), Positives = 98/184 (53%), Gaps = 9/184 (4%)

Query: 102 VSWSAMISGYIECGQLDKAVELFKVAP--VKSVVAWTAMISGYMKFGYVENSWAEDGLKL 159
           V +  ++  YI C +L  A  +F   P   K+VV W  +I  Y       N   E+ + L
Sbjct: 52  VPFEKLVDLYIACSELKIARHVFDKMPHRPKNVVLWNLLIRAY-----AWNGPYEEAIDL 106

Query: 160 LRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCK 219
              M+G GI PN  +   VL  CS L     G+++H  + +  L  +    T L+  Y K
Sbjct: 107 YYKMLGYGITPNRFTFPFVLKACSALKEASEGREIHCDIKRLRLESNVYVSTALVDFYAK 166

Query: 220 CGDLEDACKLFLEIQRKDVVTWNAMISGYAQH-GKGEKALRLFDKMKDEGMKPDSITFVA 278
           CG L+DA ++F ++ ++DVV WN+MISG++ H G  ++  RL  +M+++ + P+S T V 
Sbjct: 167 CGCLDDAKEVFDKMHKRDVVAWNSMISGFSLHEGSYDEVARLLVQMQND-VSPNSSTIVG 225

Query: 279 LLLA 282
           +L A
Sbjct: 226 VLPA 229



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 72/281 (25%), Positives = 120/281 (42%), Gaps = 54/281 (19%)

Query: 166 LGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALT-------PLISMYC 218
           L  R +    + +L  C    SL  GK +HQ + K       T LT        L+ +Y 
Sbjct: 3   LRTRLSLEYCTVLLESCIQSKSLFRGKLIHQHLLKCLHRTHETNLTNFDVPFEKLVDLYI 62

Query: 219 KCGDLEDACKLFLEI--QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITF 276
            C +L+ A  +F ++  + K+VV WN +I  YA +G  E+A+ L+ KM   G+ P+  TF
Sbjct: 63  ACSELKIARHVFDKMPHRPKNVVLWNLLIRAYAWNGPYEEAIDLYYKMLGYGITPNRFTF 122

Query: 277 VALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 336
             +L AC+       G +     +    + +     T +VD   + G L +A ++  KM 
Sbjct: 123 PFVLKACSALKEASEG-REIHCDIKRLRLESNVYVSTALVDFYAKCGCLDDAKEVFDKM- 180

Query: 337 FKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVA 396
                            HKR  +A  + ++ F+L+  +                 +D+VA
Sbjct: 181 -----------------HKRDVVAWNSMISGFSLHEGS-----------------YDEVA 206

Query: 397 RIRLSMKENNVVKMPGYSWIEVGTV-----VHEFRSGDRVH 432
           R+ + M +N+V   P  S I VG +     V+  R G  +H
Sbjct: 207 RLLVQM-QNDV--SPNSSTI-VGVLPAVAQVNSLRHGKEIH 243


>gi|357509307|ref|XP_003624942.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499957|gb|AES81160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1092

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 218/527 (41%), Positives = 320/527 (60%), Gaps = 17/527 (3%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPI----KDTASWNTM 76
           G+L+DAQ +FD++   D+VS+N +++    N+D    A  FF+ + +     D  +  ++
Sbjct: 271 GRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPS-TALRFFKGMQLGGIRPDLLTVVSL 329

Query: 77  ISGFVQKKNMAKARDL--FLAMPE---KNSVSWSAMISGYIECGQLDKAVELFKVAPVKS 131
            S F Q  +   +R +  F+   E   K+ V  +A+++ Y + G ++ A  +F   P K 
Sbjct: 330 TSIFSQLSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKD 389

Query: 132 VVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGL-GIRPNASSLSSVLLGCSHLSSLQL 190
            ++W  +++GY      +N  A + +    MM       PN  +  S++   SH+ +LQ 
Sbjct: 390 TISWNTLVTGY-----TQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAYSHVGALQQ 444

Query: 191 GKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQ 250
           G ++H  + K+ L  D    T LI +Y KCG LEDA  LF EI R   V WNA+I+    
Sbjct: 445 GMKIHAKLIKNSLYLDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDTSVPWNAIIASLGI 504

Query: 251 HGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPD 310
           HG+GE+AL+LF  M  E +K D ITFV+LL AC+H+GLVD G + FD M  +YGI     
Sbjct: 505 HGRGEEALQLFKDMLAERVKADHITFVSLLSACSHSGLVDEGQKCFDIMQKEYGIKPSLK 564

Query: 311 HYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNL 370
           HY CMVDLLGRAG L +A +L++ MP +P  +I+G LLSAC+++   +L   A+  L  +
Sbjct: 565 HYGCMVDLLGRAGYLEKAYELVRNMPIQPDASIWGALLSACKIYGNAELGTLASDRLLEV 624

Query: 371 NPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDR 430
           +  N  G YV L+NIYA  +KW+ V ++R   ++  + K PG+S + VG+    F +G++
Sbjct: 625 DSEN-VGYYVLLSNIYANTEKWEGVIKVRSLARDRGLRKTPGWSSVVVGSKAEVFYTGNQ 683

Query: 431 VHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKV 490
            HP+   I+++LK L  +MK  GYVPD  F    + E+ KEQ+L  HSE+LAIAFG+I  
Sbjct: 684 THPKYTEIYKELKVLSAKMKSLGYVPDYSFVYQDIEEDEKEQILNSHSERLAIAFGIIST 743

Query: 491 PLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDG 537
           P  +PIR+FKNLRVCGDCH ATKYIS I +REI+VRD+ RFHHFKDG
Sbjct: 744 PPRSPIRIFKNLRVCGDCHNATKYISRISEREIVVRDSNRFHHFKDG 790



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 85/345 (24%), Positives = 160/345 (46%), Gaps = 58/345 (16%)

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP-------------------- 97
           A   F  +P+KD  SWN MISGF Q  N A A  +   M                     
Sbjct: 175 AHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQ 234

Query: 98  -------------------EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAM 138
                              + +    +A+I+ Y + G+L  A  +F    V+ +V+W ++
Sbjct: 235 SDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSI 294

Query: 139 ISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLV 198
           I+ Y      +N+     L+  + M   GIRP+  ++ S+    S LS  ++ + +   V
Sbjct: 295 IAAYE-----QNNDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQRISRSILGFV 349

Query: 199 FKSP-LCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKA 257
            +   L KD      L++MY K G +  A  +F ++ RKD ++WN +++GY Q+G   +A
Sbjct: 350 IRREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWNTLVTGYTQNGLASEA 409

Query: 258 LRLFDKMKD-EGMKPDSITFVALLLACNHAGLVDLGIQYF-----DSMVNDYGIAAKPDH 311
           +  ++ M++     P+  T+V+++ A +H G +  G++       +S+  D  +A     
Sbjct: 410 IDAYNMMEECRDTIPNQGTWVSIIPAYSHVGALQQGMKIHAKLIKNSLYLDVFVA----- 464

Query: 312 YTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKR 356
            TC++DL G+ G+L +A+ L  ++P +     +  ++++  +H R
Sbjct: 465 -TCLIDLYGKCGRLEDAMSLFYEIP-RDTSVPWNAIIASLGIHGR 507



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 81/284 (28%), Positives = 131/284 (46%), Gaps = 49/284 (17%)

Query: 40  SYNIMLSCILLN----SDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKA------ 89
           S NI+LS  L+N      D+  +   F  +  K+  SWN++IS +V+     +A      
Sbjct: 51  SQNIVLSTKLINLYVTHGDISLSRSTFDYIHKKNIFSWNSIISAYVRFGKYHEAMNCVNQ 110

Query: 90  ----------RDLFLAMP------------------------EKNSVSWSAMISGYIECG 115
                     R  F   P                        E +    ++++  Y   G
Sbjct: 111 LFSMCGGGHLRPDFYTFPPILKACVSLVDGKKVHCCVFKMGFEDDVFVAASLVHLYSRYG 170

Query: 116 QLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSL 175
            LD A ++F   PVK V +W AMISG+      +N  A   L +L  M G G++ +  ++
Sbjct: 171 VLDVAHKVFVDMPVKDVGSWNAMISGF-----CQNGNAAGALGVLNRMKGEGVKMDTITV 225

Query: 176 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR 235
           +S+L  C+    +  G  +H  V K  L  D      LI+MY K G L+DA  +F +++ 
Sbjct: 226 ASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEV 285

Query: 236 KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVAL 279
           +D+V+WN++I+ Y Q+     ALR F  M+  G++PD +T V+L
Sbjct: 286 RDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSL 329



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 77/270 (28%), Positives = 134/270 (49%), Gaps = 8/270 (2%)

Query: 71  ASWNTMISGFVQKKNMAKARDLFLAM-PEKNSVSWSAMISGYIECGQLDKAVELFKVAPV 129
           A +N + +  V      K   L L     +N V  + +I+ Y+  G +  +   F     
Sbjct: 23  ADFNALFNSCVNVNATKKLHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIHK 82

Query: 130 KSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLG-IRPNASSLSSVLLGCSHLSSL 188
           K++ +W ++IS Y++FG      A + +  L  M G G +RP+  +   +L  C    SL
Sbjct: 83  KNIFSWNSIISAYVRFGKYHE--AMNCVNQLFSMCGGGHLRPDFYTFPPILKACV---SL 137

Query: 189 QLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGY 248
             GK+VH  VFK     D      L+ +Y + G L+ A K+F+++  KDV +WNAMISG+
Sbjct: 138 VDGKKVHCCVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGF 197

Query: 249 AQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK 308
            Q+G    AL + ++MK EG+K D+IT  ++L  C  +  V  G+      V  +G+ + 
Sbjct: 198 CQNGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGV-LIHLHVLKHGLDSD 256

Query: 309 PDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 338
                 ++++  + G+L +A  +  +M  +
Sbjct: 257 VFVSNALINMYSKFGRLQDAQMVFDQMEVR 286


>gi|147856413|emb|CAN82500.1| hypothetical protein VITISV_004914 [Vitis vinifera]
          Length = 1408

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 221/591 (37%), Positives = 328/591 (55%), Gaps = 64/591 (10%)

Query: 1    MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIP----QPDVVSYNIMLSCILL------ 50
            M  + T +WNS+++ +A   G L DA  LF ++     +PD+V++N +LS   L      
Sbjct: 836  MENRNTSSWNSMISSYAAL-GFLNDAWSLFYELESSDMKPDIVTWNCLLSGHFLHGYKEE 894

Query: 51   ---------------NSDDVVAAFDFFQRLPI----KDTASW-------------NTMIS 78
                           NS  + +       L      K+T  +              ++I 
Sbjct: 895  VLNILQRMQGEGFKPNSSSMTSVLQAISELGFLNMGKETHGYVLRNGFDCDVYVGTSLID 954

Query: 79   GFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELF----KVAPVKSVVA 134
             +V+  ++  A+ +F  M  +N  +W++++SGY   G  + A+ L     K      +V 
Sbjct: 955  MYVKNHSLXSAQAVFDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVT 1014

Query: 135  WTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQV 194
            W  MISGY  +G    ++                 PN++S++ +L  C+ LS LQ GK++
Sbjct: 1015 WNGMISGYAMWGCARKAFM----------------PNSASITCLLRACASLSLLQKGKEI 1058

Query: 195  HQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKG 254
            H L  ++   +D    T LI MY K   L++A K+F  IQ K + +WN MI G+A  G G
Sbjct: 1059 HCLSIRNGFIEDVFVATALIDMYSKSSSLKNAHKVFRRIQNKTLASWNCMIMGFAIFGLG 1118

Query: 255  EKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTC 314
            ++A+ +F++M+  G+ PD+ITF ALL AC ++GL+  G +YFDSM+ DY I  + +HY C
Sbjct: 1119 KEAISVFNEMQKVGVGPDAITFTALLSACKNSGLIGEGWKYFDSMITDYRIVPRLEHYCC 1178

Query: 315  MVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPAN 374
            MVDLLGRAG L EA DLI  MP KP   I+G LL +CR+HK L  AE AA NLF L P N
Sbjct: 1179 MVDLLGRAGYLDEAWDLIHTMPLKPDATIWGALLGSCRIHKNLXFAETAAKNLFKLEPNN 1238

Query: 375  AAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPE 434
            +A  Y+ + N+Y+   +W+D+  +R  M    V     +SWI++   VH F S ++ HP+
Sbjct: 1239 SAN-YILMMNLYSIFNRWEDMDHLRELMGAAGVRNRQVWSWIQINQRVHVFSSDEKPHPD 1297

Query: 435  LVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGT 494
               I+ +L +L   MK  GYVPD+      + E  K+++LL H+EKLAI +GLIK+  G 
Sbjct: 1298 AGKIYFELYQLVSEMKKLGYVPDVNCVYQNMDEVEKQKILLSHTEKLAITYGLIKMKAGE 1357

Query: 495  PIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
            PIRV KN R+C DCH A KYIS ++ RE+ +RD  RFHHF++G CSC D+W
Sbjct: 1358 PIRVIKNTRICSDCHSAAKYISLVKARELFLRDGVRFHHFREGKCSCNDFW 1408



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 75/216 (34%), Positives = 123/216 (56%), Gaps = 9/216 (4%)

Query: 69   DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELF---K 125
            D +  N +IS + +   +  AR +F +M  +N+ SW++MIS Y   G L+ A  LF   +
Sbjct: 809  DVSLCNPLISMYSKNGKLELARRVFDSMENRNTSSWNSMISSYAALGFLNDAWSLFYELE 868

Query: 126  VAPVK-SVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSH 184
             + +K  +V W  ++SG+   GY      E+ L +L+ M G G +PN+SS++SVL   S 
Sbjct: 869  SSDMKPDIVTWNCLLSGHFLHGY-----KEEVLNILQRMQGEGFKPNSSSMTSVLQAISE 923

Query: 185  LSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAM 244
            L  L +GK+ H  V ++    D    T LI MY K   L  A  +F  ++ +++  WN++
Sbjct: 924  LGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLXSAQAVFDNMKNRNIFAWNSL 983

Query: 245  ISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 280
            +SGY+  G  E ALRL ++M+ EG+KPD +T+  ++
Sbjct: 984  VSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMI 1019



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 103/222 (46%), Gaps = 40/222 (18%)

Query: 106 AMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIG 165
           A+++ Y  C  L+KA ++F   P    + W   I        +++   + G++L R M  
Sbjct: 714 ALMNFYGRCWGLEKANQVFHEMPNPEALLWNEAI-----ILNLQSEKLQKGVELFRKMQF 768

Query: 166 LGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE- 224
             ++   +++  VL  C  + +L   KQ+H  VF+  L  D +   PLISMY K G LE 
Sbjct: 769 SFLKAETATIVRVLQACGKMGALNAAKQIHGYVFRFGLDSDVSLCNPLISMYSKNGKLEL 828

Query: 225 ------------------------------DACKLFLEIQ----RKDVVTWNAMISGYAQ 250
                                         DA  LF E++    + D+VTWN ++SG+  
Sbjct: 829 ARRVFDSMENRNTSSWNSMISSYAALGFLNDAWSLFYELESSDMKPDIVTWNCLLSGHFL 888

Query: 251 HGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 292
           HG  E+ L +  +M+ EG KP+S +  ++L A +  G +++G
Sbjct: 889 HGYKEEVLNILQRMQGEGFKPNSSSMTSVLQAISELGFLNMG 930



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 56/241 (23%), Positives = 108/241 (44%), Gaps = 17/241 (7%)

Query: 92  LFLAMPEKNSVSWSA--MISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVE 149
           + + +P+K +   +A  +IS Y+  G    A  +F V   ++ + W +         +VE
Sbjct: 596 VMIKLPQKWNPDAAAKNLISSYLGFGDFWSAAMVFYVGLPRNYLKWNS---------FVE 646

Query: 150 NSWAEDG-----LKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLC 204
              +  G     L++ + + G G+  ++   S  L  C+ +  + LG ++H  + K    
Sbjct: 647 EFKSSAGSLHIVLEVFKELHGKGVVFDSEVYSVALKTCTRVMDIWLGMEIHGCLIKRGFD 706

Query: 205 KDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKM 264
            D      L++ Y +C  LE A ++F E+   + + WN  I    Q  K +K + LF KM
Sbjct: 707 LDVYLRCALMNFYGRCWGLEKANQVFHEMPNPEALLWNEAIILNLQSEKLQKGVELFRKM 766

Query: 265 KDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGK 324
           +   +K ++ T V +L AC   G ++   Q     V  +G+ +       ++ +  + GK
Sbjct: 767 QFSFLKAETATIVRVLQACGKMGALNAAKQ-IHGYVFRFGLDSDVSLCNPLISMYSKNGK 825

Query: 325 L 325
           L
Sbjct: 826 L 826


>gi|449501934|ref|XP_004161498.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Cucumis sativus]
          Length = 638

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 221/533 (41%), Positives = 313/533 (58%), Gaps = 17/533 (3%)

Query: 23  LKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTA----SWNTMIS 78
           L DA+ +FD++PQ +VVS+  M+S           A + F  +   DT     ++ T+++
Sbjct: 113 LGDARGMFDEMPQRNVVSWTAMISA-YSQRGFAFEALNLFVEMLRSDTEPNHFTFATILT 171

Query: 79  GFVQKKNMAKARDLFLAMPEKNSVSW----SAMISGYIECGQLDKAVELFKVAPVKSVVA 134
                      R +     ++N  S     S+++  Y + G++  A  +F   P + VVA
Sbjct: 172 SCYGSLGFETGRQIHSIAIKRNYESHMFVGSSLLDMYAKSGRICDAHGVFHCLPERDVVA 231

Query: 135 WTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQV 194
            TA+ISGY + G       E+ LKL R +   G+  N+ + +SVL   S L++L  GKQV
Sbjct: 232 CTAIISGYAQMG-----LDEEALKLFRQLQIEGMNSNSVTYASVLTALSGLAALNHGKQV 286

Query: 195 HQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKG 254
           H  V +S        L  LI MY KCG++  A ++F  +  +  ++WNAM+ GY++HG  
Sbjct: 287 HSHVLRSGQYSYVVLLNSLIDMYSKCGNVCYARRIFDSMPERTCISWNAMLVGYSKHGMA 346

Query: 255 EKALRLFDKMKDEG-MKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDY-GIAAKPDHY 312
            + L LF  M++E  +KPDSIT++A+L  C+H  L D+G++ F +MVN   GI     HY
Sbjct: 347 REVLELFKLMREENKVKPDSITYLAVLSGCSHGQLEDMGLEIFYNMVNGKDGIEPDIGHY 406

Query: 313 TCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNP 372
            C+VDLLGRAG++ EA D IKKMPF P  AI+G+LL +CRVH  +++       L  L P
Sbjct: 407 GCVVDLLGRAGRVEEAFDFIKKMPFVPTAAIWGSLLGSCRVHSDVEIGIIVGQKLLELEP 466

Query: 373 ANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVH 432
            NA G YV L+N+YA+  KW+D+  IR  M+E  V K PG SW+E+  +VH F + D  H
Sbjct: 467 ENA-GNYVILSNLYASAGKWEDMRNIRDLMQEKAVTKEPGRSWVELDQIVHTFHASDHTH 525

Query: 433 PELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPL 492
           P    +  K+KEL  + K  GYVPDL   L+ V EE KE++LL HSEKLA+AFGLI  P 
Sbjct: 526 PRREEVANKVKELSIKFKEDGYVPDLSCVLYDVDEEQKEKVLLGHSEKLALAFGLIATPE 585

Query: 493 GTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           GT IRV KNLR+C DCH   K++S +  R +I+RD  RFH+   G CSCGDYW
Sbjct: 586 GTTIRVIKNLRICVDCHSFAKFVSRLYARTVILRDKNRFHNIVGGVCSCGDYW 638



 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 70/232 (30%), Positives = 116/232 (50%), Gaps = 6/232 (2%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI 164
           + +I  Y +C  L  A  +F   P ++VV+WTAMIS Y + G+     A + L L   M+
Sbjct: 101 TRLIVLYNKCDCLGDARGMFDEMPQRNVVSWTAMISAYSQRGF-----AFEALNLFVEML 155

Query: 165 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 224
                PN  + +++L  C      + G+Q+H +  K          + L+ MY K G + 
Sbjct: 156 RSDTEPNHFTFATILTSCYGSLGFETGRQIHSIAIKRNYESHMFVGSSLLDMYAKSGRIC 215

Query: 225 DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 284
           DA  +F  +  +DVV   A+ISGYAQ G  E+AL+LF +++ EGM  +S+T+ ++L A +
Sbjct: 216 DAHGVFHCLPERDVVACTAIISGYAQMGLDEEALKLFRQLQIEGMNSNSVTYASVLTALS 275

Query: 285 HAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 336
               ++ G Q   S V   G  +       ++D+  + G +  A  +   MP
Sbjct: 276 GLAALNHGKQ-VHSHVLRSGQYSYVVLLNSLIDMYSKCGNVCYARRIFDSMP 326



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/184 (29%), Positives = 92/184 (50%), Gaps = 14/184 (7%)

Query: 159 LLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYC 218
           LL+M I LG         S+L  C    +++ G++VH  + K+         T LI +Y 
Sbjct: 50  LLQMAI-LGREVKFEGYDSILNECVSQRAIREGQRVHTHMIKTCYLPSVYLRTRLIVLYN 108

Query: 219 KCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVA 278
           KC  L DA  +F E+ +++VV+W AMIS Y+Q G   +AL LF +M     +P+  TF  
Sbjct: 109 KCDCLGDARGMFDEMPQRNVVSWTAMISAYSQRGFAFEALNLFVEMLRSDTEPNHFTFAT 168

Query: 279 LLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCM------VDLLGRAGKLVEAVDLI 332
           +L +C        G   F++    + IA K ++ + M      +D+  ++G++ +A  + 
Sbjct: 169 ILTSC-------YGSLGFETGRQIHSIAIKRNYESHMFVGSSLLDMYAKSGRICDAHGVF 221

Query: 333 KKMP 336
             +P
Sbjct: 222 HCLP 225



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/194 (26%), Positives = 94/194 (48%), Gaps = 16/194 (8%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
           +S+L  +AK  G++ DA  +F  +P+ DVV+   ++S       D   A   F++L I+ 
Sbjct: 202 SSLLDMYAKS-GRICDAHGVFHCLPERDVVACTAIISGYAQMGLD-EEALKLFRQLQIEG 259

Query: 70  T-------ASWNTMISGFVQKKNMAKARDLFLAMPEKNSVS-WSAMISGYIECGQLDKAV 121
                   AS  T +SG     +  +     L   + + V   +++I  Y +CG +  A 
Sbjct: 260 MNSNSVTYASVLTALSGLAALNHGKQVHSHVLRSGQYSYVVLLNSLIDMYSKCGNVCYAR 319

Query: 122 ELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLG-IRPNASSLSSVLL 180
            +F   P ++ ++W AM+ GY K G      A + L+L ++M     ++P++ +  +VL 
Sbjct: 320 RIFDSMPERTCISWNAMLVGYSKHG-----MAREVLELFKLMREENKVKPDSITYLAVLS 374

Query: 181 GCSHLSSLQLGKQV 194
           GCSH     +G ++
Sbjct: 375 GCSHGQLEDMGLEI 388


>gi|242090705|ref|XP_002441185.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
 gi|241946470|gb|EES19615.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
          Length = 878

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 214/532 (40%), Positives = 321/532 (60%), Gaps = 15/532 (2%)

Query: 21  GKLKDAQELFDKIP-QPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTA----SWNT 75
           G+L +A ++F  +    +VVS+  M++  + N D  +AA   F R+     A    +++T
Sbjct: 355 GQLGNALDIFLLMSGSQNVVSWTAMINGCIQNGDVPLAA-ALFSRMREDGVAPNDFTYST 413

Query: 76  MISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAW 135
           +++  V          +     E  S+  +A+++ Y +    ++A+ +FK+   K VV+W
Sbjct: 414 ILTASVASLPPQIHAQVIKTNYECTSIVGTALLASYSKLCNTEEALSIFKMIDQKDVVSW 473

Query: 136 TAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGC-SHLSSLQLGKQV 194
           +AM++ Y + G      ++    +   M   G++PN  ++SSV+  C S  + + LG+Q 
Sbjct: 474 SAMLTCYAQAGD-----SDGATNIFIKMTMHGLKPNEFTISSVIDACASPTAGVDLGRQF 528

Query: 195 HQLVFKSPLCKDTTALTP-LISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGK 253
           H +  K   C D   ++  L+SMY + G +E A  +F     +D+V+WN+M+SGYAQHG 
Sbjct: 529 HAISIKHR-CHDALCVSSALVSMYARKGSIESAQCIFERQTDRDLVSWNSMLSGYAQHGY 587

Query: 254 GEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYT 313
            +KAL +F +M+ EG++ D +TF+++++ C HAGLV+ G +YFDSM  DYGI    +HY 
Sbjct: 588 SQKALDVFRQMEAEGIEMDGVTFLSVIMGCAHAGLVEEGQRYFDSMARDYGITPTMEHYA 647

Query: 314 CMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPA 373
           CMVDL  RAGKL EA+ LI+ M F   P ++ TLL AC+VHK ++L + AA  L +L P 
Sbjct: 648 CMVDLYSRAGKLDEAMSLIEGMSFPAGPMVWRTLLGACKVHKNVELGKLAAEKLLSLEPF 707

Query: 374 NAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHP 433
           ++A  YV L+NIY+A  KW +   +R  M    V K  G SWI++   VH F + D+ HP
Sbjct: 708 DSA-TYVLLSNIYSAAGKWKEKDEVRKLMDTKKVKKEAGCSWIQIKNKVHSFIASDKSHP 766

Query: 434 ELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLG 493
               I+ KL+ +  ++K  GY PD  FALH V EE KE +L  HSE+LA+AFGLI  P G
Sbjct: 767 LSEQIYAKLRAMTTKLKQEGYCPDTSFALHEVAEEQKEAMLAMHSERLALAFGLIATPPG 826

Query: 494 TPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
            P+ +FKNLRVCGDCH   K +S IE REI++RD +RFHHF  G CSCGD+W
Sbjct: 827 APLHIFKNLRVCGDCHTVIKMVSKIEDREIVMRDCSRFHHFNSGVCSCGDFW 878



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 88/295 (29%), Positives = 159/295 (53%), Gaps = 19/295 (6%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAA---FDFFQRLP 66
           NS++  +AK  G +++A+ +F  +   D+VS+N +++ ++LN  D+ A     D    + 
Sbjct: 244 NSLMNMYAKC-GLVEEARVVFCGMETRDMVSWNTLMAGLVLNGHDLEALQLFHDSRSSIT 302

Query: 67  IKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSW----SAMISGYIECGQLDKAVE 122
           +   +++ T+I      K +  AR L  ++ ++   S+    +A++  Y + GQL  A++
Sbjct: 303 MLTQSTYATVIKLCANIKQLGLARQLHSSVLKRGFHSYGNVMTALMDAYSKAGQLGNALD 362

Query: 123 LFKV-APVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLG 181
           +F + +  ++VV+WTAMI+G ++ G V  + A     L   M   G+ PN  + S++L  
Sbjct: 363 IFLLMSGSQNVVSWTAMINGCIQNGDVPLAAA-----LFSRMREDGVAPNDFTYSTILTA 417

Query: 182 CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTW 241
               S   L  Q+H  V K+     +   T L++ Y K  + E+A  +F  I +KDVV+W
Sbjct: 418 ----SVASLPPQIHAQVIKTNYECTSIVGTALLASYSKLCNTEEALSIFKMIDQKDVVSW 473

Query: 242 NAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC-NHAGLVDLGIQY 295
           +AM++ YAQ G  + A  +F KM   G+KP+  T  +++ AC +    VDLG Q+
Sbjct: 474 SAMLTCYAQAGDSDGATNIFIKMTMHGLKPNEFTISSVIDACASPTAGVDLGRQF 528



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 61/248 (24%), Positives = 125/248 (50%), Gaps = 8/248 (3%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI 164
           ++++  Y++   +    ++F+  P ++VV WT++++GY++ G +      D ++L   M 
Sbjct: 143 TSLVDMYMKWHSVVDGRKVFEAMPKRNVVTWTSLLTGYIQDGALS-----DVMELFFRMR 197

Query: 165 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 224
             G+ PN+ + +SVL   +    + LG++VH    K   C        L++MY KCG +E
Sbjct: 198 AEGVWPNSVTFASVLSVVASQGMVDLGRRVHAQSVKFGCCSTVFVCNSLMNMYAKCGLVE 257

Query: 225 DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 284
           +A  +F  ++ +D+V+WN +++G   +G   +AL+LF   +         T+  ++  C 
Sbjct: 258 EARVVFCGMETRDMVSWNTLMAGLVLNGHDLEALQLFHDSRSSITMLTQSTYATVIKLC- 316

Query: 285 HAGLVDLGI-QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAI 343
            A +  LG+ +   S V   G  +  +  T ++D   +AG+L  A+D+   M        
Sbjct: 317 -ANIKQLGLARQLHSSVLKRGFHSYGNVMTALMDAYSKAGQLGNALDIFLLMSGSQNVVS 375

Query: 344 FGTLLSAC 351
           +  +++ C
Sbjct: 376 WTAMINGC 383



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 62/268 (23%), Positives = 123/268 (45%), Gaps = 45/268 (16%)

Query: 55  VVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMIS- 109
           VV     F+ +P ++  +W ++++G++Q   ++   +LF  M  +    NSV++++++S 
Sbjct: 155 VVDGRKVFEAMPKRNVVTWTSLLTGYIQDGALSDVMELFFRMRAEGVWPNSVTFASVLSV 214

Query: 110 ----------------------------------GYIECGQLDKAVELFKVAPVKSVVAW 135
                                              Y +CG +++A  +F     + +V+W
Sbjct: 215 VASQGMVDLGRRVHAQSVKFGCCSTVFVCNSLMNMYAKCGLVEEARVVFCGMETRDMVSW 274

Query: 136 TAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVH 195
             +++     G V N    + L+L             S+ ++V+  C+++  L L +Q+H
Sbjct: 275 NTLMA-----GLVLNGHDLEALQLFHDSRSSITMLTQSTYATVIKLCANIKQLGLARQLH 329

Query: 196 QLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ-RKDVVTWNAMISGYAQHGKG 254
             V K         +T L+  Y K G L +A  +FL +   ++VV+W AMI+G  Q+G  
Sbjct: 330 SSVLKRGFHSYGNVMTALMDAYSKAGQLGNALDIFLLMSGSQNVVSWTAMINGCIQNGDV 389

Query: 255 EKALRLFDKMKDEGMKPDSITFVALLLA 282
             A  LF +M+++G+ P+  T+  +L A
Sbjct: 390 PLAAALFSRMREDGVAPNDFTYSTILTA 417



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/127 (34%), Positives = 69/127 (54%), Gaps = 1/127 (0%)

Query: 167 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCK-DTTALTPLISMYCKCGDLED 225
           G R    +L  VL  C  +    LGKQ+H L  +    + D    T L+ MY K   + D
Sbjct: 98  GGRVGGGALVGVLKVCGSVPDRVLGKQLHGLCIRCGHDRGDVGVGTSLVDMYMKWHSVVD 157

Query: 226 ACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNH 285
             K+F  + +++VVTW ++++GY Q G     + LF +M+ EG+ P+S+TF ++L     
Sbjct: 158 GRKVFEAMPKRNVVTWTSLLTGYIQDGALSDVMELFFRMRAEGVWPNSVTFASVLSVVAS 217

Query: 286 AGLVDLG 292
            G+VDLG
Sbjct: 218 QGMVDLG 224


>gi|224107052|ref|XP_002333576.1| predicted protein [Populus trichocarpa]
 gi|222837227|gb|EEE75606.1| predicted protein [Populus trichocarpa]
          Length = 781

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 220/551 (39%), Positives = 336/551 (60%), Gaps = 27/551 (4%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
           N++LA +A +  +L + Q++F  + + D VS+N ++  +  +   V  A + F  +    
Sbjct: 243 NTLLALYA-ETSRLAECQKVFSWMLERDQVSWNTVIGALADSGASVSEAIEVFLEMM--- 298

Query: 70  TASWN----------TMISGFVQKKNMAKARDLFLA--MPEKNSVSWSAMISGYIECGQL 117
            A W+            +S     K   +   L L   + + N++  +A+++ Y + G++
Sbjct: 299 RAGWSPNRVTFINLLATVSSLSTSKLSHQIHALILKYNVKDDNAIE-NALLACYGKSGEM 357

Query: 118 DKAVELF-KVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLS 176
           +   E+F +++  +  V+W +MISGY     + N      + L+ +M+  G R +  + +
Sbjct: 358 ENCEEIFSRMSERRDEVSWNSMISGY-----IHNELLCKAMDLVWLMMQRGQRLDCFTFA 412

Query: 177 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK 236
           +VL  C+ +++L+ G +VH    ++ L  D    + L+ MY KCG ++ A + F  +  +
Sbjct: 413 TVLSACATVATLECGMEVHACAIRACLESDVVIGSALVDMYSKCGRIDYASRFFNLMPVR 472

Query: 237 DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYF 296
           ++ +WN+MISGYA+HG G+ ALRLF +MK  G  PD ITFV +L AC+H GLVD G +YF
Sbjct: 473 NLYSWNSMISGYARHGHGDNALRLFTRMKLSGQLPDHITFVGVLSACSHIGLVDEGFEYF 532

Query: 297 DSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSAC--RVH 354
            SM   YG+  + +HY+CMVDLLGRAG+L +  + I KMP KP   I+ T+L AC     
Sbjct: 533 KSMTEVYGLVPRVEHYSCMVDLLGRAGELDKIENFINKMPIKPNILIWRTVLGACCRGNG 592

Query: 355 KRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYS 414
           ++ +L   AA  LFN++P NA   YV L+N+YA+  KW+D+AR R +M+E  V K  G S
Sbjct: 593 RKTELGRRAAEMLFNMDPQNAVN-YVLLSNMYASGGKWEDMARTRRAMREAAVKKEAGCS 651

Query: 415 WIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLL 474
           W+ +   VH F +GD  HPE   I+ KLKEL+K+++ AGYVP ++FAL+ +  E KE+LL
Sbjct: 652 WVTMKDGVHVFVAGDNSHPEKGLIYAKLKELDKKIRDAGYVPQIKFALYDLEPENKEELL 711

Query: 475 LFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHF 534
            +HSEKLA+AF L +   G PIR+ KNLRVCGDCH A KYIS +  R I++RD+ RFHHF
Sbjct: 712 SYHSEKLAVAFVLTRNS-GLPIRIMKNLRVCGDCHSAFKYISKVVDRSIVLRDSNRFHHF 770

Query: 535 KDGTCSCGDYW 545
           +DG CSC DYW
Sbjct: 771 EDGKCSCRDYW 781



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 64/223 (28%), Positives = 105/223 (47%), Gaps = 38/223 (17%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVV 133
           NT+I+ +V+  +   AR LF  MP++N V+W+ +ISG                       
Sbjct: 39  NTLINVYVRIGDCVSARKLFDEMPDRNGVTWACLISG----------------------- 75

Query: 134 AWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSH-LSSLQLGK 192
                        Y +N   ED   +L+ MI  G  PN  +  S +  C   +   + G+
Sbjct: 76  -------------YTQNGMPEDACGVLKEMIFEGFLPNRFAFGSAIRACQESMLWRRKGR 122

Query: 193 QVHQLVFKSPLCKDTTAL-TPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQH 251
           QVH    ++ L     A+   LI+MY KCGD++ A  +F  +  KD V+WN+MI+G  Q+
Sbjct: 123 QVHGYAIRTGLNDAKVAVGNGLINMYAKCGDIDHARSVFGLMVDKDSVSWNSMITGLDQN 182

Query: 252 GKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ 294
              E A++ ++ M+  G+ P +   ++ L +C   G + LG Q
Sbjct: 183 KCFEDAVKSYNSMRKTGLMPSNFALISALSSCASLGCILLGQQ 225



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 77/346 (22%), Positives = 143/346 (41%), Gaps = 49/346 (14%)

Query: 54  DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM------PEK-------- 99
           D V+A   F  +P ++  +W  +ISG+ Q      A  +   M      P +        
Sbjct: 50  DCVSARKLFDEMPDRNGVTWACLISGYTQNGMPEDACGVLKEMIFEGFLPNRFAFGSAIR 109

Query: 100 ---NSVSW------------------------SAMISGYIECGQLDKAVELFKVAPVKSV 132
               S+ W                        + +I+ Y +CG +D A  +F +   K  
Sbjct: 110 ACQESMLWRRKGRQVHGYAIRTGLNDAKVAVGNGLINMYAKCGDIDHARSVFGLMVDKDS 169

Query: 133 VAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGK 192
           V+W +MI+G       +N   ED +K    M   G+ P+  +L S L  C+ L  + LG+
Sbjct: 170 VSWNSMITGL-----DQNKCFEDAVKSYNSMRKTGLMPSNFALISALSSCASLGCILLGQ 224

Query: 193 QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHG 252
           Q H    K  L  D +    L+++Y +   L +  K+F  +  +D V+WN +I   A  G
Sbjct: 225 QTHGEGIKLGLDMDVSVSNTLLALYAETSRLAECQKVFSWMLERDQVSWNTVIGALADSG 284

Query: 253 KG-EKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDH 311
               +A+ +F +M   G  P+ +TF+ LL   +      L  Q   +++  Y +      
Sbjct: 285 ASVSEAIEVFLEMMRAGWSPNRVTFINLLATVSSLSTSKLSHQ-IHALILKYNVKDDNAI 343

Query: 312 YTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRL 357
              ++   G++G++    ++  +M  +     + +++S   +H  L
Sbjct: 344 ENALLACYGKSGEMENCEEIFSRMSERRDEVSWNSMISG-YIHNEL 388



 Score = 58.5 bits (140), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 60/142 (42%), Gaps = 17/142 (11%)

Query: 195 HQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKG 254
           H  V K     D      LI++Y + GD   A KLF E+  ++ VTW  +ISGY Q+G  
Sbjct: 23  HLNVLKHGFDSDLFLCNTLINVYVRIGDCVSARKLFDEMPDRNGVTWACLISGYTQNGMP 82

Query: 255 EKALRLFDKMKDEGMKPDSITFVALLLACNHA-----------------GLVDLGIQYFD 297
           E A  +  +M  EG  P+   F + + AC  +                 GL D  +   +
Sbjct: 83  EDACGVLKEMIFEGFLPNRFAFGSAIRACQESMLWRRKGRQVHGYAIRTGLNDAKVAVGN 142

Query: 298 SMVNDYGIAAKPDHYTCMVDLL 319
            ++N Y      DH   +  L+
Sbjct: 143 GLINMYAKCGDIDHARSVFGLM 164


>gi|449435340|ref|XP_004135453.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Cucumis sativus]
 gi|449478665|ref|XP_004155385.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Cucumis sativus]
          Length = 604

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 221/532 (41%), Positives = 309/532 (58%), Gaps = 16/532 (3%)

Query: 23  LKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP----IKDTASWNTMIS 78
           +  A  LFD+I   D++ +NIM       S+    AF  F  L     + D  ++++++ 
Sbjct: 80  MDHAHHLFDQILDKDIILFNIMARG-YARSNSPYLAFSLFGELLCSGLLPDDYTFSSLLK 138

Query: 79  GFVQKKNMAKARDLFLAMPE----KNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVA 134
                K + +   L     +     N      +I+ Y EC  ++ A  +F       +V+
Sbjct: 139 ACASSKALREGMGLHCFAVKLGLNHNIYICPTLINMYAECNDMNAARGVFDEMEQPCIVS 198

Query: 135 WTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQV 194
           + A+I+GY +     +S   + L L R +    I P   ++ SV++ C+ L +L LGK +
Sbjct: 199 YNAIITGYAR-----SSQPNEALSLFRELQASNIEPTDVTMLSVIMSCALLGALDLGKWI 253

Query: 195 HQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKG 254
           H+ V K    K     T LI M+ KCG L DA  +F  ++ +D   W+AMI  +A HG G
Sbjct: 254 HEYVKKKGFDKYVKVNTALIDMFAKCGSLTDAISIFEGMRVRDTQAWSAMIVAFATHGDG 313

Query: 255 EKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTC 314
            KA+ +F++MK EG++PD ITF+ LL AC+HAGLV+ G  YF SM   YGI     HY C
Sbjct: 314 LKAISMFEEMKREGVRPDEITFLGLLYACSHAGLVEQGRGYFYSMSKTYGITPGIKHYGC 373

Query: 315 MVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPAN 374
           MVDLLGRAG L EA + + K+  K  P ++ TLLSAC  H  +++A+     +F L+ A+
Sbjct: 374 MVDLLGRAGHLDEAYNFVDKLEIKATPILWRTLLSACSTHGNVEMAKRVIERIFELDDAH 433

Query: 375 AAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPE 434
             G YV L+N+YA + +W+DV  +R  MK+  VVK+PG S +EV  VVHEF SGD VH  
Sbjct: 434 -GGDYVILSNLYARVGRWEDVNHLRKLMKDRGVVKVPGCSSVEVNNVVHEFFSGDGVHCV 492

Query: 435 LVSIHEKLKELEKRMKLAGYVPDLEFALHA-VGEEVKEQLLLFHSEKLAIAFGLIKVPLG 493
            V +   L EL K +KL GYVPD     HA + EE KE +L +HSEKLA+AFGL+  P G
Sbjct: 493 SVELRRALDELMKEIKLVGYVPDTSLVYHADMEEEGKELVLRYHSEKLAMAFGLLNTPPG 552

Query: 494 TPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           T IRV KNLR+CGDCH A K IS I  R+I++RD  RFH F+DG CSCGD+W
Sbjct: 553 TTIRVAKNLRICGDCHNAAKLISFIFGRKIVIRDVQRFHRFEDGKCSCGDFW 604



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 38/111 (34%), Positives = 57/111 (51%), Gaps = 8/111 (7%)

Query: 177 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGD----LEDACKLFLE 232
           S+L  C+ L+ L   KQ+     K+ L  D + LT LI+ +C        ++ A  LF +
Sbjct: 34  SLLSKCTSLNEL---KQIQAYTIKTNLQSDISVLTKLIN-FCTLNPTTSYMDHAHHLFDQ 89

Query: 233 IQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC 283
           I  KD++ +N M  GYA+      A  LF ++   G+ PD  TF +LL AC
Sbjct: 90  ILDKDIILFNIMARGYARSNSPYLAFSLFGELLCSGLLPDDYTFSSLLKAC 140


>gi|218195439|gb|EEC77866.1| hypothetical protein OsI_17132 [Oryza sativa Indica Group]
          Length = 865

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 199/473 (42%), Positives = 297/473 (62%), Gaps = 18/473 (3%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVV 133
           N++IS + +  ++  A  +F +M E++ VSW++MI+ Y + G + KA E F     ++ +
Sbjct: 410 NSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMDTRNAI 469

Query: 134 AWTAMISGYMKFGYVENSWAEDGLKLLRMMIGL-GIRPNASSLSSVLLGCSHLSSLQLGK 192
            W AM+  Y++ G       EDGLK+   M+    + P+  +  ++  GC+ + + +LG 
Sbjct: 470 TWNAMLGAYIQHGA-----EEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGANKLGD 524

Query: 193 QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHG 252
           Q+     K+ L  + +     I+MY KCG + +A KLF  +  KDVV+WNAMI+GY+QHG
Sbjct: 525 QIIGHTVKAGLILNVSVANAAITMYSKCGRISEAQKLFDLLNGKDVVSWNAMITGYSQHG 584

Query: 253 KGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY 312
            G++A + FD M  +G KPD I++VA+L  C+H+GLV  G  YFD M   +GI+   +H+
Sbjct: 585 MGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFDMMTRVHGISPGLEHF 644

Query: 313 TCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNP 372
           +CMVDLLGRAG L EA DLI KMP KP   ++G LLSAC++H   +LAE AA ++F L+ 
Sbjct: 645 SCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGALLSACKIHGNDELAELAAKHVFELDS 704

Query: 373 ANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVH 432
            + +G Y+ LA IY+   K DD A++R  M++  + K PGYSW+EV   VH F++ D  H
Sbjct: 705 PD-SGSYMLLAKIYSDAGKSDDSAQVRKLMRDKGIKKNPGYSWMEVENKVHVFKADDVSH 763

Query: 433 PELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPL 492
           P++++I  KL EL +++   GYV           E  + +  + HSEKLA+AFG++ +P 
Sbjct: 764 PQVIAIRNKLDELMEKIAHLGYVRT---------ESPRSE--IHHSEKLAVAFGIMSLPA 812

Query: 493 GTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
             PI + KNLR+CGDCH   K IS++  RE ++RD  RFHHFK G+CSCGDYW
Sbjct: 813 WMPIHIMKNLRICGDCHTVIKLISSVTDREFVIRDGVRFHHFKSGSCSCGDYW 865



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 87/312 (27%), Positives = 159/312 (50%), Gaps = 21/312 (6%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK- 68
           NS+LAG+AK  G +  A E F+ + + DVVS+N+M++  L  S  V  A      +  K 
Sbjct: 208 NSMLAGYAKLYG-IDHAIEYFEDMAERDVVSWNMMIAA-LSQSGRVREALGLVVEMHRKG 265

Query: 69  ---DTASWNTMISGFVQKKNMAKARDL----FLAMPEKNSVSWSAMISGYIECGQLDKAV 121
              D+ ++ + ++   +  ++   + L      ++P+ +    SA+I  Y +CG   +A 
Sbjct: 266 VRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAK 325

Query: 122 ELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLG 181
            +F     ++ V+WT +I G +++     S     ++L   M    +  +  +L++++ G
Sbjct: 326 RVFNSLQDRNSVSWTVLIGGSLQYECFSKS-----VELFNQMRAELMAIDQFALATLISG 380

Query: 182 CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTW 241
           C +   L LG+Q+H L  KS   +       LIS+Y KCGDL++A  +F  +  +D+V+W
Sbjct: 381 CFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSW 440

Query: 242 NAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN 301
            +MI+ Y+Q G   KA   FD M       ++IT+ A+L A    G  + G++ + +M++
Sbjct: 441 TSMITAYSQIGNIIKAREFFDGMDTR----NAITWNAMLGAYIQHGAEEDGLKMYSAMLS 496

Query: 302 DYGIAAKPDHYT 313
              +   PD  T
Sbjct: 497 QKDVT--PDWVT 506



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 87/323 (26%), Positives = 149/323 (46%), Gaps = 55/323 (17%)

Query: 5   TTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLS------------------ 46
             +  N ++ G+AKQ G L DA+ELFD++P+ DV S+N ++S                  
Sbjct: 70  NVITHNIMMNGYAKQ-GSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVSM 128

Query: 47  -------------CILLNSDDVVAA-------------FDFFQRLPIKDTASWNTMISGF 80
                        C ++ S   +               FDF+   P  +TA    ++  F
Sbjct: 129 HRSGDSLPNAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGD-PDVETA----LVDMF 183

Query: 81  VQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMIS 140
           V+   +  A  LF  +        ++M++GY +   +D A+E F+    + VV+W  MI+
Sbjct: 184 VRCGYVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIA 243

Query: 141 GYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK 200
              + G V      + L L+  M   G+R ++++ +S L  C+ L SL  GKQ+H  V +
Sbjct: 244 ALSQSGRVR-----EALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIR 298

Query: 201 SPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRL 260
           S    D    + LI +Y KCG  ++A ++F  +Q ++ V+W  +I G  Q+    K++ L
Sbjct: 299 SLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVEL 358

Query: 261 FDKMKDEGMKPDSITFVALLLAC 283
           F++M+ E M  D      L+  C
Sbjct: 359 FNQMRAELMAIDQFALATLISGC 381



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 89/351 (25%), Positives = 153/351 (43%), Gaps = 50/351 (14%)

Query: 74  NTMISGFVQKKNMAKARDLFLA-MPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSV 132
           NT++  +     ++ AR L  A + E N ++ + M++GY + G L  A ELF   P + V
Sbjct: 43  NTLLHAYFSCGALSDARRLLRADIKEPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDV 102

Query: 133 VAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIR-PNASSLSSVLLGCSHLSSLQLG 191
            +W  ++SGY +          DGL+    M   G   PNA +   V+  C  L   +L 
Sbjct: 103 ASWNTLMSGYFQARRF-----LDGLETFVSMHRSGDSLPNAFTFCCVMKSCGALGCRELA 157

Query: 192 KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR---------------- 235
            Q+  L +K     D    T L+ M+ +CG ++ A +LF +I+R                
Sbjct: 158 PQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFASRLFSQIERPTIFCRNSMLAGYAKL 217

Query: 236 ---------------KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 280
                          +DVV+WN MI+  +Q G+  +AL L  +M  +G++ DS T+ + L
Sbjct: 218 YGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTYTSSL 277

Query: 281 LACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQ 340
            AC     +  G Q    ++        P   + +++L  + G   EA  +   +  +  
Sbjct: 278 TACARLFSLGWGKQLHAKVIRSLP-QIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNS 336

Query: 341 PA----IFGTLLSACRVHKRLDL-----AEFAAMNLFNLNPANAAGCYVQL 382
            +    I G+L   C   K ++L     AE  A++ F L     +GC+ ++
Sbjct: 337 VSWTVLIGGSLQYEC-FSKSVELFNQMRAELMAIDQFALATL-ISGCFNRM 385


>gi|356498444|ref|XP_003518062.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Glycine max]
          Length = 634

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 218/533 (40%), Positives = 313/533 (58%), Gaps = 17/533 (3%)

Query: 23  LKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRL---PIKDTASWNTMISG 79
           L+DA+ +FD +P+ +VVS+  M+S          A   F Q L      +  ++ T+++ 
Sbjct: 109 LRDARHVFDVMPERNVVSWTAMISAYSQRGYASQALSLFVQMLRSGTEPNEFTFATVLTS 168

Query: 80  FVQKKNMAKARDLFLAMPEKNSVSW----SAMISGYIECGQLDKAVELFKVAPVKSVVAW 135
            +        R +   + + N  +     S+++  Y + G++ +A  +F+  P + VV+ 
Sbjct: 169 CIGSSGFVLGRQIHSHIIKLNYEAHVYVGSSLLDMYAKDGKIHEARGIFQCLPERDVVSC 228

Query: 136 TAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVH 195
           TA+ISGY + G       E+ L+L R +   G++ N  + +SVL   S L++L  GKQVH
Sbjct: 229 TAIISGYAQLG-----LDEEALELFRRLQREGMQSNYVTYTSVLTALSGLAALDHGKQVH 283

Query: 196 QLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGE 255
             + +S +         LI MY KCG+L  A ++F  +  + V++WNAM+ GY++HG+G 
Sbjct: 284 NHLLRSEVPSYVVLQNSLIDMYSKCGNLTYARRIFDTLHERTVISWNAMLVGYSKHGEGR 343

Query: 256 KALRLFDKMKDEG-MKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPD--HY 312
           + L LF+ M DE  +KPDS+T +A+L  C+H GL D G+  F  M +   I+ +PD  HY
Sbjct: 344 EVLELFNLMIDENKVKPDSVTVLAVLSGCSHGGLEDKGMDIFYDMTSG-KISVQPDSKHY 402

Query: 313 TCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNP 372
            C+VD+LGRAG++  A + +KKMPF+P  AI+G LL AC VH  LD+ EF    L  + P
Sbjct: 403 GCVVDMLGRAGRVEAAFEFVKKMPFEPSAAIWGCLLGACSVHSNLDIGEFVGHQLLQIEP 462

Query: 373 ANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVH 432
            NA G YV L+N+YA+  +W+DV  +R  M +  V K PG SWIE+  V+H F + D  H
Sbjct: 463 ENA-GNYVILSNLYASAGRWEDVRSLRNLMLKKAVTKEPGRSWIELDQVLHTFHASDCSH 521

Query: 433 PELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPL 492
           P    +  K++EL  R K AGYVPDL   LH V EE KE++LL HSEKLA+ FGLI  P 
Sbjct: 522 PRREEVSAKVQELSARFKEAGYVPDLSCVLHDVDEEQKEKILLSHSEKLALTFGLIATPE 581

Query: 493 GTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
             PIRV KNLR+C DCH   KY S I  RE+ +RD  RFH    G CSCGDYW
Sbjct: 582 SVPIRVIKNLRICVDCHNFAKYTSKIYGREVSLRDKNRFHRIVGGKCSCGDYW 634



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/257 (28%), Positives = 124/257 (48%), Gaps = 45/257 (17%)

Query: 76  MISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAW 135
           +I  +V+  ++  AR +F  MPE+N VSW+AMIS Y + G   +A+ LF           
Sbjct: 99  LIVFYVKCDSLRDARHVFDVMPERNVVSWTAMISAYSQRGYASQALSLF----------- 147

Query: 136 TAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVH 195
                                +++LR     G  PN  + ++VL  C   S   LG+Q+H
Sbjct: 148 ---------------------VQMLRS----GTEPNEFTFATVLTSCIGSSGFVLGRQIH 182

Query: 196 QLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGE 255
             + K          + L+ MY K G + +A  +F  +  +DVV+  A+ISGYAQ G  E
Sbjct: 183 SHIIKLNYEAHVYVGSSLLDMYAKDGKIHEARGIFQCLPERDVVSCTAIISGYAQLGLDE 242

Query: 256 KALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY--- 312
           +AL LF +++ EGM+ + +T+ ++L A +    +D G Q     V+++ + ++   Y   
Sbjct: 243 EALELFRRLQREGMQSNYVTYTSVLTALSGLAALDHGKQ-----VHNHLLRSEVPSYVVL 297

Query: 313 -TCMVDLLGRAGKLVEA 328
              ++D+  + G L  A
Sbjct: 298 QNSLIDMYSKCGNLTYA 314



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 84/170 (49%), Gaps = 1/170 (0%)

Query: 167 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 226
           G+  N    ++VL  C    +++ G++VH  + K+         T LI  Y KC  L DA
Sbjct: 53  GLDTNFQDYNTVLNECLRKRAIREGQRVHAHMIKTHYLPCVYLRTRLIVFYVKCDSLRDA 112

Query: 227 CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHA 286
             +F  +  ++VV+W AMIS Y+Q G   +AL LF +M   G +P+  TF  +L +C  +
Sbjct: 113 RHVFDVMPERNVVSWTAMISAYSQRGYASQALSLFVQMLRSGTEPNEFTFATVLTSCIGS 172

Query: 287 GLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 336
               LG Q   S +      A     + ++D+  + GK+ EA  + + +P
Sbjct: 173 SGFVLGRQ-IHSHIIKLNYEAHVYVGSSLLDMYAKDGKIHEARGIFQCLP 221



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 52/194 (26%), Positives = 92/194 (47%), Gaps = 17/194 (8%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCIL-LNSDDVVAAF 59
           +N +  V   S L     + GK+ +A+ +F  +P+ DVVS   ++S    L  D+   A 
Sbjct: 188 LNYEAHVYVGSSLLDMYAKDGKIHEARGIFQCLPERDVVSCTAIISGYAQLGLDE--EAL 245

Query: 60  DFFQRLPIKDTASWN-------TMISGFVQKKNMAKARDLFLAMPEKNSVSW-SAMISGY 111
           + F+RL  +   S         T +SG     +  +  +  L     + V   +++I  Y
Sbjct: 246 ELFRRLQREGMQSNYVTYTSVLTALSGLAALDHGKQVHNHLLRSEVPSYVVLQNSLIDMY 305

Query: 112 IECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLG-IRP 170
            +CG L  A  +F     ++V++W AM+ GY K G        + L+L  +MI    ++P
Sbjct: 306 SKCGNLTYARRIFDTLHERTVISWNAMLVGYSKHG-----EGREVLELFNLMIDENKVKP 360

Query: 171 NASSLSSVLLGCSH 184
           ++ ++ +VL GCSH
Sbjct: 361 DSVTVLAVLSGCSH 374


>gi|449435364|ref|XP_004135465.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g40405-like [Cucumis sativus]
          Length = 614

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 204/470 (43%), Positives = 283/470 (60%), Gaps = 6/470 (1%)

Query: 76  MISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAW 135
           +I  + +   ++    +F ++ + + V  + M+S   +CG +  A  LF   P +  V+W
Sbjct: 151 LIFMYAEMSCLSSCHRVFESVQKPDLVCQTTMVSACAKCGDIGFARNLFDSMPQRDFVSW 210

Query: 136 TAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVH 195
            AMI+GY + G      + + L L ++M   G++ N  S+ SV+  C+HL +L  GK  H
Sbjct: 211 NAMIAGYAQRGQ-----SREALNLFKLMQMDGVKVNEVSMISVVTACTHLGALDQGKWAH 265

Query: 196 QLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGE 255
             + K+ +       T L+ MY KCG+++ A K+F E+  K+V TW+  I G A +G G+
Sbjct: 266 AYIEKNKIQMTVNLGTALVDMYFKCGNVDRALKVFWEMNEKNVYTWSTAIGGLAMNGYGQ 325

Query: 256 KALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCM 315
           K L LF  MK EG+ P+ ITF+++L  C+  G VD G  +FDSM  D+GI  + +HY CM
Sbjct: 326 KCLELFSFMKHEGIAPNEITFISVLKGCSVVGFVDEGRSHFDSMKRDHGIEPRLEHYGCM 385

Query: 316 VDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANA 375
           VDL GRAG+L EA++ I  MP KP    +G LL+ACR++K ++L EFA+  L  +   N 
Sbjct: 386 VDLYGRAGRLEEALNFINTMPLKPHAGAWGALLNACRMYKNMELGEFASRKLIEVEGKN- 444

Query: 376 AGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPEL 435
            G YV L+NIYA    WD V+ +R SMK   + K+PG S +EV   VHEF SGD+ HP  
Sbjct: 445 HGAYVSLSNIYADTGNWDRVSNVRQSMKAEGISKLPGCSVMEVNGEVHEFFSGDKSHPSY 504

Query: 436 VSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTP 495
             I     E+ KR+KLAGYV      L  + EE KE  L  HSEK+AIAFGL  +  G P
Sbjct: 505 DVIETMWGEISKRLKLAGYVASTNSVLFDIEEEEKEDALCKHSEKMAIAFGLFSLKEGLP 564

Query: 496 IRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           IR+ KNLR+C DCH  +K IS I +REIIVRD  RFHHFKDG CSC D+W
Sbjct: 565 IRIVKNLRICWDCHDVSKMISKIFEREIIVRDRNRFHHFKDGECSCKDFW 614



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 75/309 (24%), Positives = 120/309 (38%), Gaps = 78/309 (25%)

Query: 23  LKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQ 82
           L     +F+ + +PD+V    M+S       D+  A + F  +P +D  SWN MI+G+ Q
Sbjct: 161 LSSCHRVFESVQKPDLVCQTTMVSACA-KCGDIGFARNLFDSMPQRDFVSWNAMIAGYAQ 219

Query: 83  KKNMAKARDLFLAMP----------------------------------EKNSVSW---- 104
           +    +A +LF  M                                   EKN +      
Sbjct: 220 RGQSREALNLFKLMQMDGVKVNEVSMISVVTACTHLGALDQGKWAHAYIEKNKIQMTVNL 279

Query: 105 -SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMM 163
            +A++  Y +CG +D+A+++F     K+V  W+  I G    GY      +  L+L   M
Sbjct: 280 GTALVDMYFKCGNVDRALKVFWEMNEKNVYTWSTAIGGLAMNGY-----GQKCLELFSFM 334

Query: 164 IGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDL 223
              GI PN  +  SVL GCS +  +  G+      F S   K    + P +  Y      
Sbjct: 335 KHEGIAPNEITFISVLKGCSVVGFVDEGRS----HFDS--MKRDHGIEPRLEHY------ 382

Query: 224 EDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC 283
                               M+  Y + G+ E+AL   + M    +KP +  + ALL AC
Sbjct: 383 ------------------GCMVDLYGRAGRLEEALNFINTMP---LKPHAGAWGALLNAC 421

Query: 284 NHAGLVDLG 292
                ++LG
Sbjct: 422 RMYKNMELG 430


>gi|297829922|ref|XP_002882843.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328683|gb|EFH59102.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 627

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 210/532 (39%), Positives = 320/532 (60%), Gaps = 15/532 (2%)

Query: 23  LKDAQELFDKIPQPDVVSYNIMLS--CILLNSDDVVAAFDFFQRLPIK-DTASWNTMISG 79
           L+DA+++ D++P+ +VVS+  M+S      +S + ++ F    R   K +  ++ T+++ 
Sbjct: 102 LEDARKVLDEMPEKNVVSWTAMISRYSQTGHSSEALSVFAEMMRSDGKPNEFTFATVLTS 161

Query: 80  FVQKKNMAKARDLFLAMPEKNSVSW----SAMISGYIECGQLDKAVELFKVAPVKSVVAW 135
            ++   +A  + +   + + N  S     S+++  Y + GQ+++A E+F+  P + VV+ 
Sbjct: 162 CIRASGLALGKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIEEAREIFECLPERDVVSC 221

Query: 136 TAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVH 195
           TA+I+GY + G       E+ L++ + +   G+RPN  + +S+L   S L+ L  GKQ H
Sbjct: 222 TAIIAGYAQLG-----LDEEALEMFQRLQSEGMRPNYVTYASLLTALSGLALLDHGKQAH 276

Query: 196 QLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGE 255
             V +  L         LI MY KCG+L  A +LF  +  +  ++WNAM+ GY++HG G 
Sbjct: 277 CHVLRRELPFYAVLQNSLIDMYSKCGNLSYAQRLFDNMPERTAISWNAMLVGYSKHGLGR 336

Query: 256 KALRLFDKMKDEG-MKPDSITFVALLLACNHAGLVDLGIQYFDSMV-NDYGIAAKPDHYT 313
           + L LF  M+DE  +KPD++T +A+L  C+H  + D G+  +D MV  +YGI    +HY 
Sbjct: 337 EVLELFRLMRDEKRVKPDAVTLLAVLSGCSHGKMEDTGLSIYDGMVAGEYGIKPDTEHYG 396

Query: 314 CMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPA 373
           C+VD+LGRAG++ EA + IK+MP KP   + G+LL ACRVH  +D+ E+    L  + P 
Sbjct: 397 CIVDMLGRAGRIDEAFEFIKRMPSKPTAGVLGSLLGACRVHLSVDIGEYVGHRLIEIEPE 456

Query: 374 NAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHP 433
           NA G YV L+N+YA+  +W+DV  +R  M +  V K PG SWI+    +H F + DR HP
Sbjct: 457 NA-GNYVILSNLYASAGRWEDVNNVRAMMMQKAVTKEPGRSWIQHEQTLHYFHANDRTHP 515

Query: 434 ELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLG 493
               +  K+KE+  +MK AGYVPD+   L+ V EE KE++LL HSEKLA+ FGLI    G
Sbjct: 516 RREEVLAKMKEISIKMKQAGYVPDISCVLYDVDEEQKEKMLLGHSEKLALTFGLITTGEG 575

Query: 494 TPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
            PIRVFKNLR+C DCH   K  S + +RE+ +RD  RFH    G CSCGDYW
Sbjct: 576 IPIRVFKNLRICVDCHNFAKIFSKVFEREVSLRDKNRFHQIVKGICSCGDYW 627



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 74/230 (32%), Positives = 122/230 (53%), Gaps = 14/230 (6%)

Query: 111 YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRP 170
           Y +C  L+ A ++    P K+VV+WTAMIS Y + G+     + + L +   M+    +P
Sbjct: 96  YGKCDCLEDARKVLDEMPEKNVVSWTAMISRYSQTGH-----SSEALSVFAEMMRSDGKP 150

Query: 171 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 230
           N  + ++VL  C   S L LGKQ+H L+ K          + L+ MY K G +E+A ++F
Sbjct: 151 NEFTFATVLTSCIRASGLALGKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIEEAREIF 210

Query: 231 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVD 290
             +  +DVV+  A+I+GYAQ G  E+AL +F +++ EGM+P+ +T+ +LL A +   L+D
Sbjct: 211 ECLPERDVVSCTAIIAGYAQLGLDEEALEMFQRLQSEGMRPNYVTYASLLTALSGLALLD 270

Query: 291 LGIQYFDSMVND----YGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 336
            G Q    ++      Y +         ++D+  + G L  A  L   MP
Sbjct: 271 HGKQAHCHVLRRELPFYAVLQNS-----LIDMYSKCGNLSYAQRLFDNMP 315



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 90/174 (51%), Gaps = 1/174 (0%)

Query: 163 MIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGD 222
           M+ LG         ++L  C    +L+ G++VH  + K+     T   T L+  Y KC  
Sbjct: 42  MVMLGPEIGFHCYDALLNACLDKRALREGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDC 101

Query: 223 LEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA 282
           LEDA K+  E+  K+VV+W AMIS Y+Q G   +AL +F +M     KP+  TF  +L +
Sbjct: 102 LEDARKVLDEMPEKNVVSWTAMISRYSQTGHSSEALSVFAEMMRSDGKPNEFTFATVLTS 161

Query: 283 CNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 336
           C  A  + LG Q    ++  +   +     + ++D+  +AG++ EA ++ + +P
Sbjct: 162 CIRASGLALGKQ-IHGLIVKWNYDSHIFVGSSLLDMYAKAGQIEEAREIFECLP 214


>gi|356545826|ref|XP_003541335.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Glycine max]
          Length = 607

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 218/565 (38%), Positives = 322/565 (56%), Gaps = 43/565 (7%)

Query: 19  QRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK---------- 68
           + G +  A +LF  +P PD   YN +       S     +  F+  +             
Sbjct: 48  KHGDINYALKLFTTLPNPDTFLYNTLFKAFFSLSQTPSLSLLFYSHMLQHCVTPNAFTFP 107

Query: 69  --------------------------DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSV 102
                                     DT + N +I  +    ++  AR +F  M + N V
Sbjct: 108 SLIRACKLEEEAKQLHAHVLKFGFGGDTYALNNLIHVYFAFGSLDDARRVFCTMSDPNVV 167

Query: 103 SWSAMISGYIECGQLDKAVELFKVAPVK-SVVAWTAMISGYMKFGYVENSWAEDGLKLLR 161
           SW++++SGY + G +D+A  +F++ P K + V+W AMI+ ++K     N + E      R
Sbjct: 168 SWTSLVSGYSQWGLVDEAFRVFELMPCKKNSVSWNAMIACFVK----GNRFREAFALFRR 223

Query: 162 MMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCG 221
           M +   +  +    +++L  C+ + +L+ G  +H+ V K+ +  D+   T +I MYCKCG
Sbjct: 224 MRVEKKMELDRFVAATMLSACTGVGALEQGMWIHKYVEKTGIVLDSKLATTIIDMYCKCG 283

Query: 222 DLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGM-KPDSITFVALL 280
            L+ A  +F  ++ K V +WN MI G+A HGKGE A+RLF +M++E M  PDSITFV +L
Sbjct: 284 CLDKAFHVFCGLKVKRVSSWNCMIGGFAMHGKGEDAIRLFKEMEEEAMVAPDSITFVNVL 343

Query: 281 LACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQ 340
            AC H+GLV+ G  YF  MV+ +GI    +HY CMVDLL RAG+L EA  +I +MP  P 
Sbjct: 344 TACAHSGLVEEGWYYFRYMVDVHGIDPTKEHYGCMVDLLARAGRLEEAKKVIDEMPMSPD 403

Query: 341 PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRL 400
            A+ G LL ACR+H  L+L E     +  L+P N+ G YV L N+YA+  KW+ VA +R 
Sbjct: 404 AAVLGALLGACRIHGNLELGEEVGNRVIELDPENS-GRYVILGNMYASCGKWEQVAGVRK 462

Query: 401 SMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEF 460
            M +  V K PG+S IE+  VV+EF +G R HP   +I+ K+ E+ + +++ G+VPD + 
Sbjct: 463 LMDDRGVKKEPGFSMIEMEGVVNEFVAGGRDHPLAEAIYAKIYEMLESIRVVGFVPDTDG 522

Query: 461 ALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEK 520
            LH + EE +E  L +HSEKLAIA+GL+K   G  +RV KNLRVC DCH+A+K IS +  
Sbjct: 523 VLHDLVEEERENPLFYHSEKLAIAYGLLKTKRGETLRVTKNLRVCKDCHQASKMISKVYD 582

Query: 521 REIIVRDTTRFHHFKDGTCSCGDYW 545
            +II+RD +RFHHF +G CSC DYW
Sbjct: 583 CDIIIRDRSRFHHFSNGECSCKDYW 607



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 65/317 (20%), Positives = 132/317 (41%), Gaps = 50/317 (15%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIP-QPDVVSYNIMLSCILLNSDDVVAAF 59
           M+    V+W S+++G++ Q G + +A  +F+ +P + + VS+N M++C  +  +    AF
Sbjct: 161 MSDPNVVSWTSLVSGYS-QWGLVDEAFRVFELMPCKKNSVSWNAMIAC-FVKGNRFREAF 218

Query: 60  DFFQRLPIK----------------------------------------DTASWNTMISG 79
             F+R+ ++                                        D+    T+I  
Sbjct: 219 ALFRRMRVEKKMELDRFVAATMLSACTGVGALEQGMWIHKYVEKTGIVLDSKLATTIIDM 278

Query: 80  FVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMI 139
           + +   + KA  +F  +  K   SW+ MI G+   G+ + A+ LFK    +++VA  ++ 
Sbjct: 279 YCKCGCLDKAFHVFCGLKVKRVSSWNCMIGGFAMHGKGEDAIRLFKEMEEEAMVAPDSIT 338

Query: 140 SGYMKFGYVENSWAEDGLKLLRMMIGL-GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLV 198
              +      +   E+G    R M+ + GI P       ++   +    L+  K+V   +
Sbjct: 339 FVNVLTACAHSGLVEEGWYYFRYMVDVHGIDPTKEHYGCMVDLLARAGRLEEAKKV---I 395

Query: 199 FKSPLCKDTTALTPLISMYCKCGDL---EDACKLFLEIQRKDVVTWNAMISGYAQHGKGE 255
            + P+  D   L  L+      G+L   E+     +E+  ++   +  + + YA  GK E
Sbjct: 396 DEMPMSPDAAVLGALLGACRIHGNLELGEEVGNRVIELDPENSGRYVILGNMYASCGKWE 455

Query: 256 KALRLFDKMKDEGMKPD 272
           +   +   M D G+K +
Sbjct: 456 QVAGVRKLMDDRGVKKE 472


>gi|224137994|ref|XP_002322703.1| predicted protein [Populus trichocarpa]
 gi|222867333|gb|EEF04464.1| predicted protein [Populus trichocarpa]
          Length = 627

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 200/441 (45%), Positives = 285/441 (64%), Gaps = 7/441 (1%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI 164
           S+++  Y +CG + +A  +F   P ++VV+W+ MI GY + G       E+ ++L +  +
Sbjct: 194 SSLVDMYAKCGDIKEARNVFDEMPHRNVVSWSGMIYGYTQLGE-----HEEAMRLFKEAL 248

Query: 165 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 224
             G+  N  +LSSV+  C   + L+LGKQ+H L FK+         + LIS+Y KCG +E
Sbjct: 249 LEGLDVNDFTLSSVIRVCGSATLLELGKQIHGLCFKTSYDLSGFVGSSLISLYSKCGLIE 308

Query: 225 DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 284
            A ++F E+  K++  WNAM+   AQH   ++A  LF KM++ GM+P+ ITF+ +L AC+
Sbjct: 309 GAYRVFDEVPIKNLGMWNAMLIACAQHAHTKEAFDLFTKMENAGMRPNFITFLCVLYACS 368

Query: 285 HAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIF 344
           HAGLV+ G +YF +++  Y I     HY  MVDLLGRAGKL EA+ +IK MP +P  +++
Sbjct: 369 HAGLVEEGKKYF-ALMKKYEIEPGTQHYASMVDLLGRAGKLQEALSVIKGMPTEPTESVW 427

Query: 345 GTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKE 404
           G  ++ CR+H   DLA FAA  +F L  A ++G +V L+N YAA  +++D A+ R  +++
Sbjct: 428 GAFITGCRIHGNTDLAAFAADKVFELG-AVSSGLHVMLSNAYAAAGRYEDAAKARKMLRD 486

Query: 405 NNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHA 464
             V K  G SWIE G  VH+F +GDR H  +  I++KL++L + M+ AGYV D  F L  
Sbjct: 487 RGVKKETGLSWIEEGNRVHKFAAGDRFHVRMKEIYQKLEDLGEEMERAGYVADTSFVLRE 546

Query: 465 VGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREII 524
           VG E K Q + +HSE+LAIAFGLI +PLG PIR+ KNLRVCGDCH A K+IS +  R II
Sbjct: 547 VGSEEKNQTIRYHSERLAIAFGLISIPLGRPIRIMKNLRVCGDCHNAIKFISKLSGRVII 606

Query: 525 VRDTTRFHHFKDGTCSCGDYW 545
           VRD  RFH F+DG CSC DYW
Sbjct: 607 VRDNNRFHRFEDGKCSCADYW 627



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 75/289 (25%), Positives = 133/289 (46%), Gaps = 28/289 (9%)

Query: 122 ELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLG 181
           ++F+ +  KS   W+++IS +      +N      ++    MIG  + P+     S    
Sbjct: 110 QVFEESERKSSTTWSSVISSF-----AQNEEPVLAIQYFCRMIGENLCPDDHIFPSATKA 164

Query: 182 CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTW 241
           C+ L    +GK VH LV K+    D    + L+ MY KCGD+++A  +F E+  ++VV+W
Sbjct: 165 CAILGRCDVGKSVHCLVIKTGYDVDVFVGSSLVDMYAKCGDIKEARNVFDEMPHRNVVSW 224

Query: 242 NAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQY----FD 297
           + MI GY Q G+ E+A+RLF +   EG+  +  T  +++  C  A L++LG Q     F 
Sbjct: 225 SGMIYGYTQLGEHEEAMRLFKEALLEGLDVNDFTLSSVIRVCGSATLLELGKQIHGLCFK 284

Query: 298 SMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSAC--RVHK 355
           +  +  G        + ++ L  + G +  A  +  ++P K    ++  +L AC    H 
Sbjct: 285 TSYDLSGFVG-----SSLISLYSKCGLIEGAYRVFDEVPIK-NLGMWNAMLIACAQHAHT 338

Query: 356 RLDLAEFAAMNLFNLNP-----------ANAAGCYVQLANIYAAMKKWD 393
           +     F  M    + P            + AG   +    +A MKK++
Sbjct: 339 KEAFDLFTKMENAGMRPNFITFLCVLYACSHAGLVEEGKKYFALMKKYE 387


>gi|147775281|emb|CAN61593.1| hypothetical protein VITISV_030555 [Vitis vinifera]
          Length = 673

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 205/480 (42%), Positives = 294/480 (61%), Gaps = 13/480 (2%)

Query: 69  DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVS-WSAMISGYIECGQLDKAVELFKVA 127
           D   WN MI G+++   +  AR+LF  MP+++ +S W+AMISG+  CG ++ A E F   
Sbjct: 204 DAVCWNAMIDGYLRFGEVEAARELFEGMPDRSMISTWNAMISGFSRCGMVEVAREFFDEM 263

Query: 128 PVKSVVAWTAMISGYMKFG-YVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLS 186
             +  ++W+AMI GY++ G ++E       L++   M    IRP    L SVL  C++L 
Sbjct: 264 KERDEISWSAMIDGYIQEGCFME------ALEIFHQMQKEKIRPRKFVLPSVLSACANLG 317

Query: 187 SLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMIS 246
           +L  G+ +H    ++ +  D    T L+ MY KCG ++ A ++F ++  K+V +WNAMI 
Sbjct: 318 ALDQGRWIHTYAKRNSIQLDGVLGTSLVDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIG 377

Query: 247 GYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIA 306
           G A HG+ E A+ LF KM    + P+ ITFV +L AC H GLV  G+  F+SM  +YG+ 
Sbjct: 378 GLAMHGRAEDAIDLFSKMD---IYPNEITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVE 434

Query: 307 AKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMN 366
            + +HY C+VDLLGRAG L EA  ++  +P +P PA++G LL ACR H  ++L E     
Sbjct: 435 PQIEHYGCIVDLLGRAGLLTEAEKVVSSIPTEPTPAVWGALLGACRKHGNVELGERVGKI 494

Query: 367 LFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGT-VVHEF 425
           L  L P N+ G Y  L+NIYA   +W++V  +R  MKE  +   PG S I++G   VH+F
Sbjct: 495 LLELEPQNS-GRYTLLSNIYAKAGRWEEVGEVRKLMKERGIKTTPGTSIIDLGRGEVHKF 553

Query: 426 RSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAF 485
             GD  HP++  I++ L ++++R+++ GY PD    L  + EE KE  +  HSEKLAI F
Sbjct: 554 IIGDGSHPQVKDIYQMLDKVKERLQMEGYEPDPSQVLFDIDEEEKETAVWQHSEKLAIGF 613

Query: 486 GLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           GLI    GT IR+ KNLRVC DCH ATK IS +  REIIVRD  R+HHF++G CSC D+W
Sbjct: 614 GLINTSPGTTIRIVKNLRVCEDCHSATKLISQVYNREIIVRDRIRYHHFRNGACSCKDFW 673



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 66/239 (27%), Positives = 112/239 (46%), Gaps = 17/239 (7%)

Query: 117 LDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLS 176
            + ++ +F      +V  W  MI        +EN+     + L   M+    RPN  +  
Sbjct: 88  FESSLRVFDFVRKPNVFLWNCMIKVC-----IENNEPFKAILLYYEMVVAHSRPNKYTYP 142

Query: 177 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK 236
           +VL  CS    +  G QVH  + K  L  D   L+  I MY   G L +A ++  +   +
Sbjct: 143 AVLKACSDSGVVAEGVQVHAHLVKHGLGGDGHILSSAIRMYASFGRLVEARRILDDKGGE 202

Query: 237 -DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQY 295
            D V WNAMI GY + G+ E A  LF+ M D  M     T+ A++   +  G+V++  ++
Sbjct: 203 VDAVCWNAMIDGYLRFGEVEAARELFEGMPDRSMIS---TWNAMISGFSRCGMVEVAREF 259

Query: 296 FDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP---FKPQPAIFGTLLSAC 351
           FD M     I+     ++ M+D   + G  +EA+++  +M     +P+  +  ++LSAC
Sbjct: 260 FDEMKERDEIS-----WSAMIDGYIQEGCFMEALEIFHQMQKEKIRPRKFVLPSVLSAC 313



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 74/155 (47%), Gaps = 6/155 (3%)

Query: 179 LLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCG-----DLEDACKLFLEI 233
           LL     +SL   KQ H L+ ++   +D+     L+  Y           E + ++F  +
Sbjct: 39  LLNTQCTTSLHHLKQAHALILRTGHLQDSYIAGSLVKSYANVSTNRYLSFESSLRVFDFV 98

Query: 234 QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGI 293
           ++ +V  WN MI    ++ +  KA+ L+ +M     +P+  T+ A+L AC+ +G+V  G+
Sbjct: 99  RKPNVFLWNCMIKVCIENNEPFKAILLYYEMVVAHSRPNKYTYPAVLKACSDSGVVAEGV 158

Query: 294 QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEA 328
           Q    +V  +G+       +  + +    G+LVEA
Sbjct: 159 QVHAHLVK-HGLGGDGHILSSAIRMYASFGRLVEA 192


>gi|147841045|emb|CAN68552.1| hypothetical protein VITISV_014227 [Vitis vinifera]
          Length = 1309

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 222/542 (40%), Positives = 311/542 (57%), Gaps = 17/542 (3%)

Query: 13   LAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTAS 72
            L  F      L DA  LFD +   D VS+++M+        D +  F  F+ L I+  A 
Sbjct: 776  LVXFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGG-FAKVGDYMNCFGTFREL-IRCGAR 833

Query: 73   WNTMISGFVQK-----KNMAKARDLFLAMP----EKNSVSWSAMISGYIECGQLDKAVEL 123
             +     FV +     KN+   R +   +     + +    +A++  Y +C +++ A  L
Sbjct: 834  PDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYGKCREIEDARFL 893

Query: 124  FKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCS 183
            F     + +V WT MI GY + G      A + L L   M   G+ P+  ++ +V+  C+
Sbjct: 894  FDKMXERDLVTWTVMIGGYAECGN-----ANESLVLFDKMREEGVVPDKVAMVTVVFACA 948

Query: 184  HLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNA 243
             L ++   + +   + +     D    T +I M+ KCG +E A ++F  ++ K+V++W+A
Sbjct: 949  KLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNVISWSA 1008

Query: 244  MISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDY 303
            MI+ Y  HG+G KAL LF  M   G+ P+ IT V+LL AC+HAGLV+ G+++F  M  DY
Sbjct: 1009 MIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYACSHAGLVEEGLRFFSXMWEDY 1068

Query: 304  GIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFA 363
             +     HYTC+VDLLGRAG+L EA+ LI  M  +    ++G  L ACR HK + LAE A
Sbjct: 1069 SVRXDVKHYTCVVDLLGRAGRLDEALKLIXSMTXEKDEGLWGAFLGACRTHKDVXLAEKA 1128

Query: 364  AMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVH 423
            A +L  L P N  G Y+ L+NIYA   +W+DVA+IR  M +  + K+PG++WIEV    H
Sbjct: 1129 ATSLLELQPQNP-GHYILLSNIYANAGRWEDVAKIRDLMSQRRLKKIPGWTWIEVDNKSH 1187

Query: 424  EFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAI 483
            +F  GD  HP    I+E LK L  +++L GYVPD  F LH V EE+K  +L  HSEKLAI
Sbjct: 1188 QFSVGDTTHPRSKEIYEMLKSLGNKLELVGYVPDTNFVLHDVDEELKIGILYTHSEKLAI 1247

Query: 484  AFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGD 543
            AFGLI  P  TPIR+ KNLRVCGDCH   K +SAI  R IIVRD  RFHHFK+G CSCGD
Sbjct: 1248 AFGLIATPEHTPIRIIKNLRVCGDCHTFCKLVSAITGRVIIVRDANRFHHFKEGACSCGD 1307

Query: 544  YW 545
            YW
Sbjct: 1308 YW 1309



 Score =  342 bits (877), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 194/490 (39%), Positives = 277/490 (56%), Gaps = 17/490 (3%)

Query: 23  LKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQ 82
           L DA  LFD +   D VS+++M+        D +  F  F+ L I+  A  +     FV 
Sbjct: 110 LDDAYGLFDGMCVRDSVSWSVMVGG-FAKVGDYINCFGTFREL-IRCGARPDNYTLPFVI 167

Query: 83  K-----KNMAKARDLFLAMP----EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVV 133
           +     KN+   R +   +     + +    +A++  Y++C +++ A  LF     + +V
Sbjct: 168 RACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYVKCREIEDARFLFDKMQERDLV 227

Query: 134 AWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ 193
            WT MI GY + G      A + L L   M   G+ P+  ++ +V+  C+ L ++   + 
Sbjct: 228 TWTVMIGGYAECGK-----ANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARI 282

Query: 194 VHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGK 253
           +   + +     D    T +I MY KCG +E A ++F  ++ K+V++W+AMI+ Y  HG+
Sbjct: 283 IDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQ 342

Query: 254 GEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYT 313
           G KAL LF  M   GM PD IT  +LL AC+HAGLV+ G+++F SM  DY +     HYT
Sbjct: 343 GRKALDLFPMMLSSGMLPDKITLASLLYACSHAGLVEEGLRFFSSMWEDYSVRTDVKHYT 402

Query: 314 CMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPA 373
           C+VDLLGRAG+L EA+ LIK M  +    ++G  L ACR HK + LAE AA +L  L   
Sbjct: 403 CVVDLLGRAGRLDEALKLIKSMTIEKDEGLWGAFLGACRTHKDVVLAEKAATSLLELQSQ 462

Query: 374 NAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHP 433
           N  G YV L+NIYA   +W+DVA+IR  M +  + K PG++WIEV    H+F  GD  HP
Sbjct: 463 N-PGHYVLLSNIYANAGRWEDVAKIRDLMSQRRLKKTPGWTWIEVDNKSHQFSVGDTTHP 521

Query: 434 ELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLG 493
               I+E LK L  +++L GYVPD  F LH V EE+K  +L  HSEKLAIAFGLI  P  
Sbjct: 522 RSKEIYEMLKSLSNKLELVGYVPDTNFVLHDVDEELKIGILYTHSEKLAIAFGLIATPEH 581

Query: 494 TPIRVFKNLR 503
           TPIR+ KNLR
Sbjct: 582 TPIRIIKNLR 591



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 83/339 (24%), Positives = 151/339 (44%), Gaps = 66/339 (19%)

Query: 22  KLKDAQELFDKIPQPDVVSYNIML----SCILLNSDDVVAAFDFFQRLP----IKDTASW 73
           +++DA+ LFDK+ + D+V++ +M+     C   N   V+     F+++     + D  + 
Sbjct: 210 EIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVL-----FEKMREEGVVPDKVAM 264

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISGYIECGQLDKAVELFKVAPV 129
            T++    +   M KAR +   +  K    + +  +AMI  Y +CG ++ A E+F     
Sbjct: 265 VTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEE 324

Query: 130 KSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQ 189
           K+V++W+AMI+ Y   GY  +      L L  MM+  G+ P+  +L+S+L  CSH   ++
Sbjct: 325 KNVISWSAMIAAY---GY--HGQGRKALDLFPMMLSSGMLPDKITLASLLYACSHAGLVE 379

Query: 190 LGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYA 249
            G     L F S + +D +                          R DV  +  ++    
Sbjct: 380 EG-----LRFFSSMWEDYSV-------------------------RTDVKHYTCVVDLLG 409

Query: 250 QHGKGEKALRLFDKM---KDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIA 306
           + G+ ++AL+L   M   KDEG+      + A L AC     V L  +   S++     +
Sbjct: 410 RAGRLDEALKLIKSMTIEKDEGL------WGAFLGACRTHKDVVLAEKAATSLLELQ--S 461

Query: 307 AKPDHYTCMVDLLGRAGK---LVEAVDLIKKMPFKPQPA 342
             P HY  + ++   AG+   + +  DL+ +   K  P 
Sbjct: 462 QNPGHYVLLSNIYANAGRWEDVAKIRDLMSQRRLKKTPG 500



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 78/169 (46%), Gaps = 8/169 (4%)

Query: 169 RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK 228
           R N     S L+ C +L+ +   +QVH       + ++      LI  Y     L+DA  
Sbjct: 59  RLNPKFYISALVNCRNLTQV---RQVHAQASVHGMLENIVVANKLIYFYSYYRALDDAYG 115

Query: 229 LFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGL 288
           LF  +  +D V+W+ M+ G+A+ G        F ++   G +PD+ T   ++ AC     
Sbjct: 116 LFDGMCVRDSVSWSVMVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKN 175

Query: 289 VDLGIQYFDSMVNDYGIAAKPDHYTC--MVDLLGRAGKLVEAVDLIKKM 335
           + +G +    +V  +G+    DH+ C  +VD+  +  ++ +A  L  KM
Sbjct: 176 LQMG-RLIHHIVYKFGL--DLDHFVCAALVDMYVKCREIEDARFLFDKM 221



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/152 (25%), Positives = 72/152 (47%), Gaps = 5/152 (3%)

Query: 186 SSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMI 245
           ++L   +QVH       + ++      L+  Y     L+DA  LF  +  +D V+W+ M+
Sbjct: 749 TNLTQVRQVHXQASVHGMLQNLIVANKLVXFYSYYRALDDAYGLFDGMCVRDSVSWSVMV 808

Query: 246 SGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGI 305
            G+A+ G        F ++   G +PD+ T   ++ AC     + +G +    +V  +G+
Sbjct: 809 GGFAKVGDYMNCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMG-RLIHHIVYKFGL 867

Query: 306 AAKPDHYTC--MVDLLGRAGKLVEAVDLIKKM 335
               DH+ C  +VD+ G+  ++ +A  L  KM
Sbjct: 868 --DLDHFVCAALVDMYGKCREIEDARFLFDKM 897


>gi|225435554|ref|XP_002283117.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 624

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 229/572 (40%), Positives = 325/572 (56%), Gaps = 49/572 (8%)

Query: 17  AKQRGKLKDAQELFDKIPQPDVVSYNIML---SCILLNSDDVVAAFDFFQR----LPIKD 69
           A   G L  A +LFD+IP+PDV  YN M+   + I  +S + +  F    R    LP + 
Sbjct: 59  ASSFGSLSYAHQLFDQIPKPDVFIYNTMIKAHAVIPTSSHNSMRIFLSMVRVSGFLPNRY 118

Query: 70  TASW---------------------------------NTMISGFVQKKNMAKARDLFLAM 96
           T  +                                 N MI  +     + +AR +F   
Sbjct: 119 TFVFVFKACGNGLGVLEGEQIRVHAIKIGLESNLFVTNAMIRMYANWGLVDEARRVFDWS 178

Query: 97  PEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDG 156
            +++  SW+ MI GY+  G++ +A E+F     + VV+WT +I+GY++ G  +     + 
Sbjct: 179 LDQDLYSWNIMIGGYVGSGEIGRAKEMFDEMSERDVVSWTTIIAGYVQVGCFK-----EA 233

Query: 157 LKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISM 216
           L L   M+  G  PN  +L+S L  C++L +L  G+ +H  + KS +  +   L  L+ M
Sbjct: 234 LDLFHEMLQTGPPPNEFTLASALAACANLVALDQGRWIHVYIDKSEIKMNERLLASLLDM 293

Query: 217 YCKCGDLEDACKLFLEIQ--RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSI 274
           Y KCG+++ A K+F +    +  V  WNAMI GYA HGK ++A+ LF++MK E + P+ +
Sbjct: 294 YAKCGEIDFAAKVFHDEYGLKLKVWPWNAMIGGYAMHGKSKEAIDLFEQMKVEKVSPNKV 353

Query: 275 TFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKK 334
           TFVALL AC+H  LV+ G  YF SM + YGI  + +HY CMVDLLGR+G L EA + +  
Sbjct: 354 TFVALLNACSHGKLVEEGRGYFKSMASSYGIEPEIEHYGCMVDLLGRSGLLKEAEETVFN 413

Query: 335 MPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDD 394
           MP  P   I+G LL ACR+HK ++  +     +  L+ ++  GC+V LAN+Y+A  +WD+
Sbjct: 414 MPMAPDATIWGALLGACRIHKDIERGQRIGKIIKELD-SDHIGCHVLLANLYSASGQWDE 472

Query: 395 VARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGY 454
              +R  ++ +   K PG S IE+  V H+F  GDR HP+   ++  L E+  ++K AGY
Sbjct: 473 AKAVRQKIEVSGRKKTPGCSSIELNGVFHQFLVGDRSHPQTKQLYLFLDEMTTKLKNAGY 532

Query: 455 VPDL-EFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATK 513
           VP+  E  L    EE KE  L  HSEKLAIAFGLI  P GT IR+ KNLRVC DCH ATK
Sbjct: 533 VPEFGEVLLDIDDEEDKETALSKHSEKLAIAFGLINTPPGTAIRIVKNLRVCADCHEATK 592

Query: 514 YISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           +IS + KREIIVRD  R+HHFKDG CSC DYW
Sbjct: 593 FISKVYKREIIVRDRIRYHHFKDGFCSCKDYW 624



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 58/277 (20%), Positives = 116/277 (41%), Gaps = 31/277 (11%)

Query: 8   NWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRL-- 65
           +WN ++ G+    G++  A+E+FD++ + DVVS+  +++   +       A D F  +  
Sbjct: 185 SWNIMIGGYVGS-GEIGRAKEMFDEMSERDVVSWTTIIAG-YVQVGCFKEALDLFHEMLQ 242

Query: 66  --PIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISGYIECGQLDK 119
             P  +  +  + ++       + + R + + + +     N    ++++  Y +CG++D 
Sbjct: 243 TGPPPNEFTLASALAACANLVALDQGRWIHVYIDKSEIKMNERLLASLLDMYAKCGEIDF 302

Query: 120 AVELF--KVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSS 177
           A ++F  +      V  W AMI GY   G      +++ + L   M    + PN  +  +
Sbjct: 303 AAKVFHDEYGLKLKVWPWNAMIGGYAMHGK-----SKEAIDLFEQMKVEKVSPNKVTFVA 357

Query: 178 VLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK- 236
           +L  CSH   ++ G+      FKS     +  + P I  Y    DL     L  E +   
Sbjct: 358 LLNACSHGKLVEEGRG----YFKS--MASSYGIEPEIEHYGCMVDLLGRSGLLKEAEETV 411

Query: 237 -------DVVTWNAMISGYAQHGKGEKALRLFDKMKD 266
                  D   W A++     H   E+  R+   +K+
Sbjct: 412 FNMPMAPDATIWGALLGACRIHKDIERGQRIGKIIKE 448


>gi|347954516|gb|AEP33758.1| organelle transcript processing 82, partial [Barbarea verna]
          Length = 710

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 221/568 (38%), Positives = 321/568 (56%), Gaps = 48/568 (8%)

Query: 19  QRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMIS 78
           + G+ KDA ++FD     DVVSY  +++    +   + +A   F  +P+KD  SWN +IS
Sbjct: 150 KNGRWKDAHKVFDGSSHRDVVSYTALITG-YASRGYIESAQKMFDEIPVKDVVSWNAIIS 208

Query: 79  GFVQKKNMAKARDLFLAM------PEKNSV--------------------SW-------- 104
           G+    N  +A DLF  M      P+++++                    SW        
Sbjct: 209 GYADTGNNKEALDLFKEMMKTNVKPDESTMVTVVSACAQSGSIQLGRQVHSWIDDHGLGS 268

Query: 105 -----SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKL 159
                +A+I  Y +CG+++ A  LF+    K V++W  MI GY        +  ++ L L
Sbjct: 269 NLKIVNALIDLYSKCGEVETACGLFQGLSNKDVISWNTMIGGYTHL-----NLYKEALLL 323

Query: 160 LRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK--SPLCKDTTALTPLISMY 217
            + M+  G  PN  ++ S+L  C+ L ++  G+ +H  + K    +   ++  T LI MY
Sbjct: 324 FQEMLRSGENPNDVTMLSILPACAQLGAIDFGRWIHVYIDKRIKGVTNASSLRTSLIDMY 383

Query: 218 CKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFV 277
            KCGD+E A ++F  +  + +   NAMI G+A HG+   A  +F +M+  G++PD ITFV
Sbjct: 384 AKCGDIEAAHQVFNSMHHRTLSACNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFV 443

Query: 278 ALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPF 337
            LL AC+H+G++DLG + F SM  +Y I  K +HY CM+DLLG  G   EA ++I  M  
Sbjct: 444 GLLSACSHSGMLDLGRRIFRSMTQNYKITPKLEHYGCMIDLLGHLGLFKEAEEMINTMTM 503

Query: 338 KPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVAR 397
           +P   I+ +LL AC++H  ++L E  A  L  + P N  G YV L+NIYA   +W++VA 
Sbjct: 504 EPDGVIWCSLLKACKMHGNVELGESFAQKLIKIEPENP-GSYVLLSNIYATAGRWNEVAN 562

Query: 398 IRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPD 457
           IR  + +  + K+PG S IE+ +VVHEF  GD+ HP    I+  L+E+E  ++ AG+VPD
Sbjct: 563 IRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEEAGFVPD 622

Query: 458 LEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISA 517
               L  + EE K+  L  HSEKLAIAFGLI    GT + + KNLRVC +CH ATK IS 
Sbjct: 623 TSEVLQEMEEEFKQGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISK 682

Query: 518 IEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           I KREII RD TRFHHF+DG CSC DYW
Sbjct: 683 IYKREIIARDRTRFHHFRDGVCSCNDYW 710



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 100/338 (29%), Positives = 168/338 (49%), Gaps = 19/338 (5%)

Query: 75  TMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVA 134
           ++IS +V+      A  +F     ++ VS++A+I+GY   G ++ A ++F   PVK VV+
Sbjct: 143 SLISMYVKNGRWKDAHKVFDGSSHRDVVSYTALITGYASRGYIESAQKMFDEIPVKDVVS 202

Query: 135 WTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQV 194
           W A+ISGY   G       ++ L L + M+   ++P+ S++ +V+  C+   S+QLG+QV
Sbjct: 203 WNAIISGYADTGN-----NKEALDLFKEMMKTNVKPDESTMVTVVSACAQSGSIQLGRQV 257

Query: 195 HQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKG 254
           H  +    L  +   +  LI +Y KCG++E AC LF  +  KDV++WN MI GY      
Sbjct: 258 HSWIDDHGLGSNLKIVNALIDLYSKCGEVETACGLFQGLSNKDVISWNTMIGGYTHLNLY 317

Query: 255 EKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGI---QYFDSMVNDYGIAAKPDH 311
           ++AL LF +M   G  P+ +T +++L AC   G +D G     Y D  +   G+      
Sbjct: 318 KEALLLFQEMLRSGENPNDVTMLSILPACAQLGAIDFGRWIHVYIDKRIK--GVTNASSL 375

Query: 312 YTCMVDLLGRAGKLVEAVDLIKKMPFKPQPA----IFGTLLSACRVHKRLDLAEFAAMNL 367
            T ++D+  + G +  A  +   M  +   A    IFG  +   R +   D+  F+ M  
Sbjct: 376 RTSLIDMYAKCGDIEAAHQVFNSMHHRTLSACNAMIFGFAMHG-RANAAFDI--FSRMRK 432

Query: 368 FNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKEN 405
             + P +    +V L +  +     D   RI  SM +N
Sbjct: 433 NGIEPDDIT--FVGLLSACSHSGMLDLGRRIFRSMTQN 468



 Score =  108 bits (269), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 76/253 (30%), Positives = 117/253 (46%), Gaps = 37/253 (14%)

Query: 117 LDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLS 176
           L  A+ +F+     +++ W  M  G+       +S     +KL   MI LG+ PN+ +  
Sbjct: 53  LPYAISVFETIQEPNLLIWNTMFRGH-----ALSSDPVSAIKLYVCMISLGLLPNSYTFP 107

Query: 177 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGD-------------- 222
            +L  C+ L   + G+Q+H  V K     D    T LISMY K G               
Sbjct: 108 FLLKSCAKLKVSKEGQQIHGHVLKLGYELDLYVHTSLISMYVKNGRWKDAHKVFDGSSHR 167

Query: 223 -----------------LEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMK 265
                            +E A K+F EI  KDVV+WNA+ISGYA  G  ++AL LF +M 
Sbjct: 168 DVVSYTALITGYASRGYIESAQKMFDEIPVKDVVSWNAIISGYADTGNNKEALDLFKEMM 227

Query: 266 DEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKL 325
              +KPD  T V ++ AC  +G + LG Q   S ++D+G+ +       ++DL  + G++
Sbjct: 228 KTNVKPDESTMVTVVSACAQSGSIQLGRQ-VHSWIDDHGLGSNLKIVNALIDLYSKCGEV 286

Query: 326 VEAVDLIKKMPFK 338
             A  L + +  K
Sbjct: 287 ETACGLFQGLSNK 299


>gi|15227724|ref|NP_178481.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206038|sp|Q9SI53.1|PP147_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g03880, mitochondrial; Flags: Precursor
 gi|4582435|gb|AAD24821.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|330250668|gb|AEC05762.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 630

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 215/535 (40%), Positives = 313/535 (58%), Gaps = 28/535 (5%)

Query: 23  LKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQR------LPIKDTASWNTM 76
           L DA +LFD++PQ +V+S+  M+S          +     Q+      L ++D    N  
Sbjct: 112 LNDAHQLFDQMPQRNVISWTTMIS--------AYSKCKIHQKALELLVLMLRDNVRPNVY 163

Query: 77  ISGFVQK--KNMAKARDLFLAMP----EKNSVSWSAMISGYIECGQLDKAVELFKVAPVK 130
               V +    M+  R L   +     E +    SA+I  + + G+ + A+ +F      
Sbjct: 164 TYSSVLRSCNGMSDVRMLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTG 223

Query: 131 SVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQL 190
             + W ++I G+      +NS ++  L+L + M   G     ++L+SVL  C+ L+ L+L
Sbjct: 224 DAIVWNSIIGGF-----AQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLEL 278

Query: 191 GKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQ 250
           G Q H  + K    +D      L+ MYCKCG LEDA ++F +++ +DV+TW+ MISG AQ
Sbjct: 279 GMQAHVHIVKYD--QDLILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQ 336

Query: 251 HGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPD 310
           +G  ++AL+LF++MK  G KP+ IT V +L AC+HAGL++ G  YF SM   YGI    +
Sbjct: 337 NGYSQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVRE 396

Query: 311 HYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNL 370
           HY CM+DLLG+AGKL +AV L+ +M  +P    + TLL ACRV + + LAE+AA  +  L
Sbjct: 397 HYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIAL 456

Query: 371 NPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDR 430
           +P +A G Y  L+NIYA  +KWD V  IR  M++  + K PG SWIEV   +H F  GD 
Sbjct: 457 DPEDA-GTYTLLSNIYANSQKWDSVEEIRTRMRDRGIKKEPGCSWIEVNKQIHAFIIGDN 515

Query: 431 VHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKV 490
            HP++V + +KL +L  R+   GYVP+  F L  +  E  E  L  HSEKLA+AFGL+ +
Sbjct: 516 SHPQIVEVSKKLNQLIHRLTGIGYVPETNFVLQDLEGEQMEDSLRHHSEKLALAFGLMTL 575

Query: 491 PLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           P+   IR+ KNLR+CGDCH   K  S +E R I++RD  R+HHF+DG CSCGDYW
Sbjct: 576 PIEKVIRIRKNLRICGDCHVFCKLASKLEIRSIVIRDPIRYHHFQDGKCSCGDYW 630



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 76/272 (27%), Positives = 139/272 (51%), Gaps = 17/272 (6%)

Query: 69  DTASWNTMISGFVQKKNMAKA----RDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELF 124
           D+A+++ +I   +  + + +     R L+           + +I+ Y++   L+ A +LF
Sbjct: 60  DSATYSELIKCCISNRAVHEGNLICRHLYFNGHRPMMFLVNVLINMYVKFNLLNDAHQLF 119

Query: 125 KVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSH 184
              P ++V++WT MIS Y K         +  L+LL +M+   +RPN  + SSVL  C+ 
Sbjct: 120 DQMPQRNVISWTTMISAYSKCKI-----HQKALELLVLMLRDNVRPNVYTYSSVLRSCNG 174

Query: 185 LSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAM 244
           +S +++   +H  + K  L  D    + LI ++ K G+ EDA  +F E+   D + WN++
Sbjct: 175 MSDVRM---LHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSI 231

Query: 245 ISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN-DY 303
           I G+AQ+ + + AL LF +MK  G   +  T  ++L AC    L++LG+Q    +V  D 
Sbjct: 232 IGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVKYDQ 291

Query: 304 GIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335
            +         +VD+  + G L +A+ +  +M
Sbjct: 292 DLILN----NALVDMYCKCGSLEDALRVFNQM 319



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 62/243 (25%), Positives = 116/243 (47%), Gaps = 21/243 (8%)

Query: 16  FAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP----IKDTA 71
           FAK  G+ +DA  +FD++   D + +N ++     NS   V A + F+R+     I + A
Sbjct: 204 FAKL-GEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDV-ALELFKRMKRAGFIAEQA 261

Query: 72  SWNTMISGFVQKK--NMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPV 129
           +  +++          +     + +   +++ +  +A++  Y +CG L+ A+ +F     
Sbjct: 262 TLTSVLRACTGLALLELGMQAHVHIVKYDQDLILNNALVDMYCKCGSLEDALRVFNQMKE 321

Query: 130 KSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQ 189
           + V+ W+ MISG  + GY     +++ LKL   M   G +PN  ++  VL  CSH   L+
Sbjct: 322 RDVITWSTMISGLAQNGY-----SQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLLE 376

Query: 190 LG----KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ-RKDVVTWNAM 244
            G    + + +L    P+ +    +  L+    K G L+DA KL  E++   D VTW  +
Sbjct: 377 DGWYYFRSMKKLYGIDPVREHYGCMIDLLG---KAGKLDDAVKLLNEMECEPDAVTWRTL 433

Query: 245 ISG 247
           +  
Sbjct: 434 LGA 436


>gi|125591422|gb|EAZ31772.1| hypothetical protein OsJ_15924 [Oryza sativa Japonica Group]
          Length = 855

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 198/473 (41%), Positives = 297/473 (62%), Gaps = 18/473 (3%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVV 133
           N++IS + +  ++  A  +F +M E++ VSW++MI+ Y + G + KA E F     ++ +
Sbjct: 400 NSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMATRNAI 459

Query: 134 AWTAMISGYMKFGYVENSWAEDGLKLLRMMIGL-GIRPNASSLSSVLLGCSHLSSLQLGK 192
            W AM+  Y++ G       EDGLK+   M+    + P+  +  ++  GC+ + + +LG 
Sbjct: 460 TWNAMLGAYIQHGA-----EEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGANKLGD 514

Query: 193 QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHG 252
           Q+     K+ L  + +     I+MY KCG + +A KLF  +  KDVV+WNAMI+GY+QHG
Sbjct: 515 QIIGHTVKAGLILNVSVANAAITMYSKCGRISEAQKLFDLLNGKDVVSWNAMITGYSQHG 574

Query: 253 KGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY 312
            G++A + FD M  +G KPD I++VA+L  C+H+GLV  G  YFD M   +GI+   +H+
Sbjct: 575 MGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFDMMTRVHGISPGLEHF 634

Query: 313 TCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNP 372
           +CMVDLLGRAG L EA DLI KMP KP   ++G LLSAC++H   +LAE AA ++F L+ 
Sbjct: 635 SCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGALLSACKIHGNDELAELAAKHVFELDS 694

Query: 373 ANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVH 432
            + +G Y+ LA IY+   K DD A++R  M++  + K PGYSW+EV   VH F++ D  H
Sbjct: 695 PD-SGSYMLLAKIYSDAGKSDDSAQVRKLMRDKGIKKNPGYSWMEVENKVHVFKADDVSH 753

Query: 433 PELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPL 492
           P++++I  K+ EL +++   GYV           E  + +  + HSEKLA+AFG++ +P 
Sbjct: 754 PQVIAIRNKMDELMEKIAHLGYVRT---------ESPRSE--IHHSEKLAVAFGIMSLPA 802

Query: 493 GTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
             PI + KNLR+CGDCH   K IS++  RE ++RD  RFHHFK G+CSCGDYW
Sbjct: 803 WMPIHIMKNLRICGDCHTVIKLISSVTDREFVIRDGVRFHHFKSGSCSCGDYW 855



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 87/297 (29%), Positives = 148/297 (49%), Gaps = 29/297 (9%)

Query: 5   TTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLS-----------CILLNSD 53
             +  N ++ G+AKQ G L DA+ELFD++P+ DV S+N ++S           C  L   
Sbjct: 86  NVITHNIMMNGYAKQ-GSLSDAEELFDRMPRRDVASWNTLMSDTSRPAGSWMSCGALGCR 144

Query: 54  DVVAA-------FDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSA 106
           ++          FDF+   P  +TA    ++  FV+   +  A  LF  +        ++
Sbjct: 145 ELAPQLLGLFWKFDFWGD-PDVETA----LVDMFVRCGYVDFASRLFSQIERPTIFCRNS 199

Query: 107 MISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGL 166
           M++GY +   +D A+E F+    + VV+W  MI+   + G V      + L L+  M   
Sbjct: 200 MLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVR-----EALGLVVEMHRK 254

Query: 167 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 226
           G+R ++++ +S L  C+ L SL  GKQ+H  V +S    D    + LI +Y KCG  ++A
Sbjct: 255 GVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEA 314

Query: 227 CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC 283
            ++F  +Q ++ V+W  +I G  Q+    K++ LF++M+ E M  D      L+  C
Sbjct: 315 KRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGC 371



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 87/312 (27%), Positives = 159/312 (50%), Gaps = 21/312 (6%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK- 68
           NS+LAG+AK  G +  A E F+ + + DVVS+N+M++  L  S  V  A      +  K 
Sbjct: 198 NSMLAGYAKLYG-IDHAIEYFEDMAERDVVSWNMMIAA-LSQSGRVREALGLVVEMHRKG 255

Query: 69  ---DTASWNTMISGFVQKKNMAKARDL----FLAMPEKNSVSWSAMISGYIECGQLDKAV 121
              D+ ++ + ++   +  ++   + L      ++P+ +    SA+I  Y +CG   +A 
Sbjct: 256 VRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAK 315

Query: 122 ELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLG 181
            +F     ++ V+WT +I G +++     S     ++L   M    +  +  +L++++ G
Sbjct: 316 RVFNSLQDRNSVSWTVLIGGSLQYECFSKS-----VELFNQMRAELMAIDQFALATLISG 370

Query: 182 CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTW 241
           C +   L LG+Q+H L  KS   +       LIS+Y KCGDL++A  +F  +  +D+V+W
Sbjct: 371 CFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSW 430

Query: 242 NAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN 301
            +MI+ Y+Q G   KA   FD M       ++IT+ A+L A    G  + G++ + +M++
Sbjct: 431 TSMITAYSQIGNIIKAREFFDGMATR----NAITWNAMLGAYIQHGAEEDGLKMYSAMLS 486

Query: 302 DYGIAAKPDHYT 313
              +   PD  T
Sbjct: 487 QKDVT--PDWVT 496



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 84/350 (24%), Positives = 145/350 (41%), Gaps = 74/350 (21%)

Query: 74  NTMISGFVQKKNMAKARDLFLA-MPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSV 132
           NT++  ++    ++ AR L  A + E N ++ + M++GY + G L  A ELF   P + V
Sbjct: 59  NTLLHAYLSCGALSDARRLLRADIKEPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDV 118

Query: 133 VAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGK 192
            +W  ++S                            RP  S +S   LGC  L+   LG 
Sbjct: 119 ASWNTLMSDTS-------------------------RPAGSWMSCGALGCRELAPQLLG- 152

Query: 193 QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR----------------- 235
               L +K     D    T L+ M+ +CG ++ A +LF +I+R                 
Sbjct: 153 ----LFWKFDFWGDPDVETALVDMFVRCGYVDFASRLFSQIERPTIFCRNSMLAGYAKLY 208

Query: 236 --------------KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLL 281
                         +DVV+WN MI+  +Q G+  +AL L  +M  +G++ DS T+ + L 
Sbjct: 209 GIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLT 268

Query: 282 ACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQP 341
           AC     +  G Q    ++        P   + +++L  + G   EA  +   +  +   
Sbjct: 269 ACARLFSLGWGKQLHAKVIRSLP-QIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSV 327

Query: 342 A----IFGTLLSACRVHKRLDL-----AEFAAMNLFNLNPANAAGCYVQL 382
           +    I G+L   C   K ++L     AE  A++ F L     +GC+ ++
Sbjct: 328 SWTVLIGGSLQYEC-FSKSVELFNQMRAELMAIDQFALATL-ISGCFNRM 375


>gi|224134923|ref|XP_002327523.1| predicted protein [Populus trichocarpa]
 gi|222836077|gb|EEE74498.1| predicted protein [Populus trichocarpa]
          Length = 635

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 204/477 (42%), Positives = 286/477 (59%), Gaps = 20/477 (4%)

Query: 69  DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAP 128
           D  +WN MISG+ + K              K+ +SW+A+++G++  GQ+D A + F   P
Sbjct: 179 DVVTWNAMISGYNRIK--------------KDVISWTAIVTGFVNTGQVDAARKYFHKMP 224

Query: 129 VKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSL 188
            +  V+WTAMI GY++     N + E  L L R M    I+P+  ++ SVL  C+ L +L
Sbjct: 225 ERDHVSWTAMIDGYLRL----NCYKE-ALMLFREMQTSKIKPDEFTMVSVLTACAQLGAL 279

Query: 189 QLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGY 248
           +LG+ +   + K+ +  DT     LI MY KCG++E A  +F  + ++D  TW AM+ G 
Sbjct: 280 ELGEWIRTYIDKNKVKNDTFVGNALIDMYFKCGNVEMALSIFNTLPQRDKFTWTAMVVGL 339

Query: 249 AQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK 308
           A +G GE+AL +F +M    + PD +T+V +L AC H G+VD G ++F SM   +GI   
Sbjct: 340 AINGCGEEALNMFSQMLKASVTPDEVTYVGVLSACTHTGMVDEGKKFFASMTARHGIEPN 399

Query: 309 PDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLF 368
             HY CMVDLLG+AG L EA ++IK MP KP   ++G LL ACR+HK  ++AE A   + 
Sbjct: 400 IAHYGCMVDLLGKAGHLKEAHEIIKNMPMKPNSIVWGALLGACRIHKDAEMAERAIEQIL 459

Query: 369 NLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSG 428
            L P N A  YV   NIYAA  KWD +  +R  M +  + K PG S IE+  +VHEF +G
Sbjct: 460 ELEPNNGA-VYVLQCNIYAACNKWDKLRELRQVMMDRGIKKTPGCSLIEMNGIVHEFVAG 518

Query: 429 DRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLI 488
           D+ HP+   I+ KL ++   +K+AGY P+       + EE KE  +  HSEKLAIAFGLI
Sbjct: 519 DQSHPQTKEIYGKLNKMTSDLKIAGYSPNTSEVFLDIAEEDKENAVYRHSEKLAIAFGLI 578

Query: 489 KVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
               G  IR+ KNLR+C DCH   K +S +  RE+IVRD TRFHHF+ G+CSC DYW
Sbjct: 579 NSGPGVTIRIVKNLRMCIDCHHVAKLVSKVYDREVIVRDRTRFHHFRHGSCSCKDYW 635



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 74/255 (29%), Positives = 117/255 (45%), Gaps = 35/255 (13%)

Query: 113 ECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNA 172
           E G +  A +LF   P  SV +W  M  GY +      +  + G+ L   M+   ++P+ 
Sbjct: 60  EFGDMCYARQLFDTIPEPSVFSWNIMFKGYSRI-----ACPKLGVSLYLEMLERNVKPDC 114

Query: 173 SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLE 232
            +   +  G +   +LQLG+++H  V K  L  +  A   LI+MY  CG ++ A  +F  
Sbjct: 115 YTYPFLFKGFTRSVALQLGRELHCHVVKYGLDSNVFAHNALINMYSLCGLIDMARGIFDM 174

Query: 233 IQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 292
             + DVVTWNAMISGY +                  +K D I++ A++    + G VD  
Sbjct: 175 SCKSDVVTWNAMISGYNR------------------IKKDVISWTAIVTGFVNTGQVDAA 216

Query: 293 IQYFDSMVNDYGIAAKPDH--YTCMVDLLGRAGKLVEAVDLIKKM---PFKPQPAIFGTL 347
            +YF  M        + DH  +T M+D   R     EA+ L ++M     KP      ++
Sbjct: 217 RKYFHKM-------PERDHVSWTAMIDGYLRLNCYKEALMLFREMQTSKIKPDEFTMVSV 269

Query: 348 LSACRVHKRLDLAEF 362
           L+AC     L+L E+
Sbjct: 270 LTACAQLGALELGEW 284


>gi|115456187|ref|NP_001051694.1| Os03g0816600 [Oryza sativa Japonica Group]
 gi|113550165|dbj|BAF13608.1| Os03g0816600, partial [Oryza sativa Japonica Group]
          Length = 708

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 213/564 (37%), Positives = 315/564 (55%), Gaps = 46/564 (8%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G L  A+ELF++IP+ +V+S+NI+    + N D +  A   F  +P ++ A+WN M++G 
Sbjct: 152 GDLTAARELFERIPRRNVMSWNILFGGYIKNGD-LGGARKLFDEMPERNVATWNAMVAGL 210

Query: 81  VQKKNMAKARDLFLAMP---------------------------------------EKNS 101
                  ++   FL M                                        +++ 
Sbjct: 211 TNLGFDEESLGFFLDMRREGMHPDEFGLGSVFRCCAGLRDVVTGRQVHAYVVRSGLDRDM 270

Query: 102 VSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLR 161
              S++   Y+ CG L +   + ++ P  S+V+   +I+G       +N  +E  L+   
Sbjct: 271 CVGSSLAHMYMRCGCLQEGEAVLRMLPSLSIVSCNTIIAGR-----TQNGDSEGALEYFC 325

Query: 162 MMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCG 221
           MM  +G+  +  +  S +  CS L++L  G+Q+H  V K+ + K    +T L+ MY +CG
Sbjct: 326 MMRSVGVAADVVTFVSAISSCSDLAALAQGQQIHGQVMKAGVDKVVPVMTCLVHMYSRCG 385

Query: 222 DLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLL 281
            L D+ ++F      D    +AMIS Y  HG G+KA+ LF +M + G +P  +TF+ALL 
Sbjct: 386 CLGDSERVFFGYCGSDTFLLSAMISAYGFHGHGQKAIELFKQMMNGGAEPSDVTFLALLY 445

Query: 282 ACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQP 341
           AC+H+GL + G+  F+ M   YG+     HYTC+VDLLGR+G L EA  LI  MP  P  
Sbjct: 446 ACSHSGLKEEGMDCFELMTKTYGMQPSVKHYTCVVDLLGRSGCLDEAEALILSMPLTPDG 505

Query: 342 AIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLS 401
            I+ TLLSAC+  K  D+AE  A  +  L+P ++A  YV L+NI A  ++W DV+ +R +
Sbjct: 506 VIWKTLLSACKTQKNFDMAERIAKRVIELDPHDSAS-YVLLSNIRATSRRWGDVSEVRKA 564

Query: 402 MKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFA 461
           M++NNV K PG SW+E+   +H+F +GD  HP    I E L+E+  +++  GY PD+   
Sbjct: 565 MRDNNVRKEPGVSWVELKGHIHQFCTGDESHPRQKEIDECLEEMMAKIRQCGYSPDMSMV 624

Query: 462 LHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKR 521
           LH + +E KE  L  HSEKLAIAF  + +P G PIRV KNLRVC DCH A K +S +  R
Sbjct: 625 LHDMEDEEKEVSLSHHSEKLAIAFAFLSLPEGVPIRVMKNLRVCDDCHLAIKLMSQVTGR 684

Query: 522 EIIVRDTTRFHHFKDGTCSCGDYW 545
           EI+VRD +RFHHFKDG CSC DYW
Sbjct: 685 EIVVRDVSRFHHFKDGRCSCRDYW 708



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 77/257 (29%), Positives = 125/257 (48%), Gaps = 6/257 (2%)

Query: 69  DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAP 128
           D  + N ++  +    ++  AR+LF  +P +N +SW+ +  GYI+ G L  A +LF   P
Sbjct: 137 DRFTANHLMLAYADLGDLTAARELFERIPRRNVMSWNILFGGYIKNGDLGGARKLFDEMP 196

Query: 129 VKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSL 188
            ++V  W AM++G    G+ E S     L     M   G+ P+   L SV   C+ L  +
Sbjct: 197 ERNVATWNAMVAGLTNLGFDEES-----LGFFLDMRREGMHPDEFGLGSVFRCCAGLRDV 251

Query: 189 QLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGY 248
             G+QVH  V +S L +D    + L  MY +CG L++   +   +    +V+ N +I+G 
Sbjct: 252 VTGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGCLQEGEAVLRMLPSLSIVSCNTIIAGR 311

Query: 249 AQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK 308
            Q+G  E AL  F  M+  G+  D +TFV+ + +C+    +  G Q     V   G+   
Sbjct: 312 TQNGDSEGALEYFCMMRSVGVAADVVTFVSAISSCSDLAALAQG-QQIHGQVMKAGVDKV 370

Query: 309 PDHYTCMVDLLGRAGKL 325
               TC+V +  R G L
Sbjct: 371 VPVMTCLVHMYSRCGCL 387



 Score = 52.0 bits (123), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 50/200 (25%), Positives = 76/200 (38%), Gaps = 43/200 (21%)

Query: 172 ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFL 231
           A   S +   C  L  L   +Q+H     S    D      L+  Y   GDL  A +LF 
Sbjct: 106 ARLFSHLFRACRALRPL---RQLHAFAATSGAATDRFTANHLMLAYADLGDLTAARELFE 162

Query: 232 EIQRKDVVTWNAMISGYAQHGKGEKALRLFDK---------------------------- 263
            I R++V++WN +  GY ++G    A +LFD+                            
Sbjct: 163 RIPRRNVMSWNILFGGYIKNGDLGGARKLFDEMPERNVATWNAMVAGLTNLGFDEESLGF 222

Query: 264 ---MKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLG 320
              M+ EGM PD     ++   C  AGL D+        V+ Y + +  D   C+   L 
Sbjct: 223 FLDMRREGMHPDEFGLGSVFRCC--AGLRDV---VTGRQVHAYVVRSGLDRDMCVGSSLA 277

Query: 321 ----RAGKLVEAVDLIKKMP 336
               R G L E   +++ +P
Sbjct: 278 HMYMRCGCLQEGEAVLRMLP 297



 Score = 45.1 bits (105), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 61/284 (21%), Positives = 118/284 (41%), Gaps = 25/284 (8%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP--- 66
            S LA    + G L++ + +   +P   +VS N +++    N D    A ++F  +    
Sbjct: 273 GSSLAHMYMRCGCLQEGEAVLRMLPSLSIVSCNTIIAGRTQNGDS-EGALEYFCMMRSVG 331

Query: 67  -IKDTASWNTMISGFVQKKNMAKARDL----FLAMPEKNSVSWSAMISGYIECGQLDKAV 121
              D  ++ + IS       +A+ + +      A  +K     + ++  Y  CG L  + 
Sbjct: 332 VAADVVTFVSAISSCSDLAALAQGQQIHGQVMKAGVDKVVPVMTCLVHMYSRCGCLGDSE 391

Query: 122 ELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLG 181
            +F           +AMIS Y   G+      +  ++L + M+  G  P+  +  ++L  
Sbjct: 392 RVFFGYCGSDTFLLSAMISAYGFHGH-----GQKAIELFKQMMNGGAEPSDVTFLALLYA 446

Query: 182 CSHLSSLQLGKQVHQLVFKS----PLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ-RK 236
           CSH    + G    +L+ K+    P  K  T +  L+    + G L++A  L L +    
Sbjct: 447 CSHSGLKEEGMDCFELMTKTYGMQPSVKHYTCVVDLLG---RSGCLDEAEALILSMPLTP 503

Query: 237 DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKP-DSITFVAL 279
           D V W  ++S        + A R+  ++ +  + P DS ++V L
Sbjct: 504 DGVIWKTLLSACKTQKNFDMAERIAKRVIE--LDPHDSASYVLL 545


>gi|32487551|emb|CAE03754.1| OSJNBa0013K16.3 [Oryza sativa Japonica Group]
          Length = 865

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 198/473 (41%), Positives = 297/473 (62%), Gaps = 18/473 (3%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVV 133
           N++IS + +  ++  A  +F +M E++ VSW++MI+ Y + G + KA E F     ++ +
Sbjct: 410 NSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMATRNAI 469

Query: 134 AWTAMISGYMKFGYVENSWAEDGLKLLRMMIGL-GIRPNASSLSSVLLGCSHLSSLQLGK 192
            W AM+  Y++ G       EDGLK+   M+    + P+  +  ++  GC+ + + +LG 
Sbjct: 470 TWNAMLGAYIQHGA-----EEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGANKLGD 524

Query: 193 QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHG 252
           Q+     K+ L  + +     I+MY KCG + +A KLF  +  KDVV+WNAMI+GY+QHG
Sbjct: 525 QIIGHTVKAGLILNVSVANAAITMYSKCGRISEAQKLFDLLNGKDVVSWNAMITGYSQHG 584

Query: 253 KGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY 312
            G++A + FD M  +G KPD I++VA+L  C+H+GLV  G  YFD M   +GI+   +H+
Sbjct: 585 MGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFDMMTRVHGISPGLEHF 644

Query: 313 TCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNP 372
           +CMVDLLGRAG L EA DLI KMP KP   ++G LLSAC++H   +LAE AA ++F L+ 
Sbjct: 645 SCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGALLSACKIHGNDELAELAAKHVFELDS 704

Query: 373 ANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVH 432
            + +G Y+ LA IY+   K DD A++R  M++  + K PGYSW+EV   VH F++ D  H
Sbjct: 705 PD-SGSYMLLAKIYSDAGKSDDSAQVRKLMRDKGIKKNPGYSWMEVENKVHVFKADDVSH 763

Query: 433 PELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPL 492
           P++++I  K+ EL +++   GYV           E  + +  + HSEKLA+AFG++ +P 
Sbjct: 764 PQVIAIRNKMDELMEKIAHLGYVRT---------ESPRSE--IHHSEKLAVAFGIMSLPA 812

Query: 493 GTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
             PI + KNLR+CGDCH   K IS++  RE ++RD  RFHHFK G+CSCGDYW
Sbjct: 813 WMPIHIMKNLRICGDCHTVIKLISSVTDREFVIRDGVRFHHFKSGSCSCGDYW 865



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 87/312 (27%), Positives = 159/312 (50%), Gaps = 21/312 (6%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK- 68
           NS+LAG+AK  G +  A E F+ + + DVVS+N+M++  L  S  V  A      +  K 
Sbjct: 208 NSMLAGYAKLYG-IDHAIEYFEDMAERDVVSWNMMIAA-LSQSGRVREALGLVVEMHRKG 265

Query: 69  ---DTASWNTMISGFVQKKNMAKARDL----FLAMPEKNSVSWSAMISGYIECGQLDKAV 121
              D+ ++ + ++   +  ++   + L      ++P+ +    SA+I  Y +CG   +A 
Sbjct: 266 VRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAK 325

Query: 122 ELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLG 181
            +F     ++ V+WT +I G +++     S     ++L   M    +  +  +L++++ G
Sbjct: 326 RVFNSLQDRNSVSWTVLIGGSLQYECFSKS-----VELFNQMRAELMAIDQFALATLISG 380

Query: 182 CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTW 241
           C +   L LG+Q+H L  KS   +       LIS+Y KCGDL++A  +F  +  +D+V+W
Sbjct: 381 CFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSW 440

Query: 242 NAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN 301
            +MI+ Y+Q G   KA   FD M       ++IT+ A+L A    G  + G++ + +M++
Sbjct: 441 TSMITAYSQIGNIIKAREFFDGMATR----NAITWNAMLGAYIQHGAEEDGLKMYSAMLS 496

Query: 302 DYGIAAKPDHYT 313
              +   PD  T
Sbjct: 497 QKDVT--PDWVT 506



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 87/323 (26%), Positives = 149/323 (46%), Gaps = 55/323 (17%)

Query: 5   TTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLS------------------ 46
             +  N ++ G+AKQ G L DA+ELFD++P+ DV S+N ++S                  
Sbjct: 70  NVITHNIMMNGYAKQ-GSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVSM 128

Query: 47  -------------CILLNSDDVVAA-------------FDFFQRLPIKDTASWNTMISGF 80
                        C ++ S   +               FDF+   P  +TA    ++  F
Sbjct: 129 HRSGDSLPNAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGD-PDVETA----LVDMF 183

Query: 81  VQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMIS 140
           V+   +  A  LF  +        ++M++GY +   +D A+E F+    + VV+W  MI+
Sbjct: 184 VRCGYVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIA 243

Query: 141 GYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK 200
              + G V      + L L+  M   G+R ++++ +S L  C+ L SL  GKQ+H  V +
Sbjct: 244 ALSQSGRVR-----EALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIR 298

Query: 201 SPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRL 260
           S    D    + LI +Y KCG  ++A ++F  +Q ++ V+W  +I G  Q+    K++ L
Sbjct: 299 SLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVEL 358

Query: 261 FDKMKDEGMKPDSITFVALLLAC 283
           F++M+ E M  D      L+  C
Sbjct: 359 FNQMRAELMAIDQFALATLISGC 381



 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 89/351 (25%), Positives = 154/351 (43%), Gaps = 50/351 (14%)

Query: 74  NTMISGFVQKKNMAKARDLFLA-MPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSV 132
           NT++  ++    ++ AR L  A + E N ++ + M++GY + G L  A ELF   P + V
Sbjct: 43  NTLLHAYLSCGALSDARRLLRADIKEPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDV 102

Query: 133 VAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIR-PNASSLSSVLLGCSHLSSLQLG 191
            +W  ++SGY +          DGL+    M   G   PNA +   V+  C  L   +L 
Sbjct: 103 ASWNTLMSGYFQARRF-----LDGLETFVSMHRSGDSLPNAFTFCCVMKSCGALGCRELA 157

Query: 192 KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR---------------- 235
            Q+  L +K     D    T L+ M+ +CG ++ A +LF +I+R                
Sbjct: 158 PQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFASRLFSQIERPTIFCRNSMLAGYAKL 217

Query: 236 ---------------KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 280
                          +DVV+WN MI+  +Q G+  +AL L  +M  +G++ DS T+ + L
Sbjct: 218 YGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTYTSSL 277

Query: 281 LACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQ 340
            AC     +  G Q    ++        P   + +++L  + G   EA  +   +  +  
Sbjct: 278 TACARLFSLGWGKQLHAKVIRSLP-QIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNS 336

Query: 341 PA----IFGTLLSACRVHKRLDL-----AEFAAMNLFNLNPANAAGCYVQL 382
            +    I G+L   C   K ++L     AE  A++ F L     +GC+ ++
Sbjct: 337 VSWTVLIGGSLQYEC-FSKSVELFNQMRAELMAIDQFALATL-ISGCFNRM 385


>gi|108711755|gb|ABF99550.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|215697380|dbj|BAG91374.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 646

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 213/564 (37%), Positives = 315/564 (55%), Gaps = 46/564 (8%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G L  A+ELF++IP+ +V+S+NI+    + N D +  A   F  +P ++ A+WN M++G 
Sbjct: 90  GDLTAARELFERIPRRNVMSWNILFGGYIKNGD-LGGARKLFDEMPERNVATWNAMVAGL 148

Query: 81  VQKKNMAKARDLFLAMP---------------------------------------EKNS 101
                  ++   FL M                                        +++ 
Sbjct: 149 TNLGFDEESLGFFLDMRREGMHPDEFGLGSVFRCCAGLRDVVTGRQVHAYVVRSGLDRDM 208

Query: 102 VSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLR 161
              S++   Y+ CG L +   + ++ P  S+V+   +I+G       +N  +E  L+   
Sbjct: 209 CVGSSLAHMYMRCGCLQEGEAVLRMLPSLSIVSCNTIIAGR-----TQNGDSEGALEYFC 263

Query: 162 MMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCG 221
           MM  +G+  +  +  S +  CS L++L  G+Q+H  V K+ + K    +T L+ MY +CG
Sbjct: 264 MMRSVGVAADVVTFVSAISSCSDLAALAQGQQIHGQVMKAGVDKVVPVMTCLVHMYSRCG 323

Query: 222 DLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLL 281
            L D+ ++F      D    +AMIS Y  HG G+KA+ LF +M + G +P  +TF+ALL 
Sbjct: 324 CLGDSERVFFGYCGSDTFLLSAMISAYGFHGHGQKAIELFKQMMNGGAEPSDVTFLALLY 383

Query: 282 ACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQP 341
           AC+H+GL + G+  F+ M   YG+     HYTC+VDLLGR+G L EA  LI  MP  P  
Sbjct: 384 ACSHSGLKEEGMDCFELMTKTYGMQPSVKHYTCVVDLLGRSGCLDEAEALILSMPLTPDG 443

Query: 342 AIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLS 401
            I+ TLLSAC+  K  D+AE  A  +  L+P ++A  YV L+NI A  ++W DV+ +R +
Sbjct: 444 VIWKTLLSACKTQKNFDMAERIAKRVIELDPHDSAS-YVLLSNIRATSRRWGDVSEVRKA 502

Query: 402 MKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFA 461
           M++NNV K PG SW+E+   +H+F +GD  HP    I E L+E+  +++  GY PD+   
Sbjct: 503 MRDNNVRKEPGVSWVELKGHIHQFCTGDESHPRQKEIDECLEEMMAKIRQCGYSPDMSMV 562

Query: 462 LHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKR 521
           LH + +E KE  L  HSEKLAIAF  + +P G PIRV KNLRVC DCH A K +S +  R
Sbjct: 563 LHDMEDEEKEVSLSHHSEKLAIAFAFLSLPEGVPIRVMKNLRVCDDCHLAIKLMSQVTGR 622

Query: 522 EIIVRDTTRFHHFKDGTCSCGDYW 545
           EI+VRD +RFHHFKDG CSC DYW
Sbjct: 623 EIVVRDVSRFHHFKDGRCSCRDYW 646



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 77/257 (29%), Positives = 125/257 (48%), Gaps = 6/257 (2%)

Query: 69  DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAP 128
           D  + N ++  +    ++  AR+LF  +P +N +SW+ +  GYI+ G L  A +LF   P
Sbjct: 75  DRFTANHLMLAYADLGDLTAARELFERIPRRNVMSWNILFGGYIKNGDLGGARKLFDEMP 134

Query: 129 VKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSL 188
            ++V  W AM++G    G+ E S     L     M   G+ P+   L SV   C+ L  +
Sbjct: 135 ERNVATWNAMVAGLTNLGFDEES-----LGFFLDMRREGMHPDEFGLGSVFRCCAGLRDV 189

Query: 189 QLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGY 248
             G+QVH  V +S L +D    + L  MY +CG L++   +   +    +V+ N +I+G 
Sbjct: 190 VTGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGCLQEGEAVLRMLPSLSIVSCNTIIAGR 249

Query: 249 AQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK 308
            Q+G  E AL  F  M+  G+  D +TFV+ + +C+    +  G Q     V   G+   
Sbjct: 250 TQNGDSEGALEYFCMMRSVGVAADVVTFVSAISSCSDLAALAQG-QQIHGQVMKAGVDKV 308

Query: 309 PDHYTCMVDLLGRAGKL 325
               TC+V +  R G L
Sbjct: 309 VPVMTCLVHMYSRCGCL 325



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 50/200 (25%), Positives = 76/200 (38%), Gaps = 43/200 (21%)

Query: 172 ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFL 231
           A   S +   C  L  L   +Q+H     S    D      L+  Y   GDL  A +LF 
Sbjct: 44  ARLFSHLFRACRALRPL---RQLHAFAATSGAATDRFTANHLMLAYADLGDLTAARELFE 100

Query: 232 EIQRKDVVTWNAMISGYAQHGKGEKALRLFDK---------------------------- 263
            I R++V++WN +  GY ++G    A +LFD+                            
Sbjct: 101 RIPRRNVMSWNILFGGYIKNGDLGGARKLFDEMPERNVATWNAMVAGLTNLGFDEESLGF 160

Query: 264 ---MKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLG 320
              M+ EGM PD     ++   C  AGL D+        V+ Y + +  D   C+   L 
Sbjct: 161 FLDMRREGMHPDEFGLGSVFRCC--AGLRDV---VTGRQVHAYVVRSGLDRDMCVGSSLA 215

Query: 321 ----RAGKLVEAVDLIKKMP 336
               R G L E   +++ +P
Sbjct: 216 HMYMRCGCLQEGEAVLRMLP 235



 Score = 45.4 bits (106), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 61/284 (21%), Positives = 118/284 (41%), Gaps = 25/284 (8%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP--- 66
            S LA    + G L++ + +   +P   +VS N +++    N D    A ++F  +    
Sbjct: 211 GSSLAHMYMRCGCLQEGEAVLRMLPSLSIVSCNTIIAGRTQNGDS-EGALEYFCMMRSVG 269

Query: 67  -IKDTASWNTMISGFVQKKNMAKARDL----FLAMPEKNSVSWSAMISGYIECGQLDKAV 121
              D  ++ + IS       +A+ + +      A  +K     + ++  Y  CG L  + 
Sbjct: 270 VAADVVTFVSAISSCSDLAALAQGQQIHGQVMKAGVDKVVPVMTCLVHMYSRCGCLGDSE 329

Query: 122 ELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLG 181
            +F           +AMIS Y   G+      +  ++L + M+  G  P+  +  ++L  
Sbjct: 330 RVFFGYCGSDTFLLSAMISAYGFHGH-----GQKAIELFKQMMNGGAEPSDVTFLALLYA 384

Query: 182 CSHLSSLQLGKQVHQLVFKS----PLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ-RK 236
           CSH    + G    +L+ K+    P  K  T +  L+    + G L++A  L L +    
Sbjct: 385 CSHSGLKEEGMDCFELMTKTYGMQPSVKHYTCVVDLLG---RSGCLDEAEALILSMPLTP 441

Query: 237 DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKP-DSITFVAL 279
           D V W  ++S        + A R+  ++ +  + P DS ++V L
Sbjct: 442 DGVIWKTLLSACKTQKNFDMAERIAKRVIE--LDPHDSASYVLL 483


>gi|15220337|ref|NP_172596.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122213654|sp|Q3E6Q1.1|PPR32_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g11290
 gi|332190592|gb|AEE28713.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 809

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 219/549 (39%), Positives = 318/549 (57%), Gaps = 16/549 (2%)

Query: 5   TTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQR 64
           + VN ++ L     + G L+ A++LFD + + +VVS+N M+   + N +   A    FQ+
Sbjct: 269 SLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAML-IFQK 327

Query: 65  LPIKDTASWNTMISGFVQK----KNMAKARDLFLAMPE----KNSVSWSAMISGYIECGQ 116
           +  +     +  + G +       ++ + R +     E    +N    +++IS Y +C +
Sbjct: 328 MLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKE 387

Query: 117 LDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLS 176
           +D A  +F     +++V+W AMI      G+ +N    D L     M    ++P+  +  
Sbjct: 388 VDTAASMFGKLQSRTLVSWNAMI-----LGFAQNGRPIDALNYFSQMRSRTVKPDTFTYV 442

Query: 177 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK 236
           SV+   + LS     K +H +V +S L K+    T L+ MY KCG +  A  +F  +  +
Sbjct: 443 SVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSER 502

Query: 237 DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYF 296
            V TWNAMI GY  HG G+ AL LF++M+   +KP+ +TF++++ AC+H+GLV+ G++ F
Sbjct: 503 HVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACSHSGLVEAGLKCF 562

Query: 297 DSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKR 356
             M  +Y I    DHY  MVDLLGRAG+L EA D I +MP KP   ++G +L AC++HK 
Sbjct: 563 YMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQIHKN 622

Query: 357 LDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWI 416
           ++ AE AA  LF LNP +  G +V LANIY A   W+ V ++R+SM    + K PG S +
Sbjct: 623 VNFAEKAAERLFELNP-DDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPGCSMV 681

Query: 417 EVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLF 476
           E+   VH F SG   HP+   I+  L++L   +K AGYVPD    L  V  +VKEQLL  
Sbjct: 682 EIKNEVHSFFSGSTAHPDSKKIYAFLEKLICHIKEAGYVPDTNLVL-GVENDVKEQLLST 740

Query: 477 HSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKD 536
           HSEKLAI+FGL+    GT I V KNLRVC DCH ATKYIS +  REI+VRD  RFHHFK+
Sbjct: 741 HSEKLAISFGLLNTTAGTTIHVRKNLRVCADCHNATKYISLVTGREIVVRDMQRFHHFKN 800

Query: 537 GTCSCGDYW 545
           G CSCGDYW
Sbjct: 801 GACSCGDYW 809



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 100/384 (26%), Positives = 182/384 (47%), Gaps = 63/384 (16%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  +  V+WN+++AG++ Q G  + A E+   + +      N+  S I + S  V+ A  
Sbjct: 196 MPERDLVSWNTIVAGYS-QNGMARMALEMVKSMCEE-----NLKPSFITIVS--VLPAVS 247

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
             + + +        M SGF    N++                 +A++  Y +CG L+ A
Sbjct: 248 ALRLISVGKEIHGYAMRSGFDSLVNIS-----------------TALVDMYAKCGSLETA 290

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLL 180
            +LF     ++VV+W +MI       YV+N   ++ + + + M+  G++P   S+   L 
Sbjct: 291 RQLFDGMLERNVVSWNSMID-----AYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALH 345

Query: 181 GCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVT 240
            C+ L  L+ G+ +H+L  +  L ++ + +  LISMYCKC +++ A  +F ++Q + +V+
Sbjct: 346 ACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVS 405

Query: 241 WNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA------CNHA-------- 286
           WNAMI G+AQ+G+   AL  F +M+   +KPD+ T+V+++ A       +HA        
Sbjct: 406 WNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVM 465

Query: 287 ------------GLVDL----GIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVD 330
                        LVD+    G      ++ D         +  M+D  G  G    A++
Sbjct: 466 RSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALE 525

Query: 331 LIKKM---PFKPQPAIFGTLLSAC 351
           L ++M     KP    F +++SAC
Sbjct: 526 LFEEMQKGTIKPNGVTFLSVISAC 549



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 76/280 (27%), Positives = 140/280 (50%), Gaps = 14/280 (5%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTA----SWNTM 76
           G + +A  +F+ I     V Y+ ML        D+  A  FF R+   D      ++  +
Sbjct: 83  GSVDEAARVFEPIDSKLNVLYHTMLKG-FAKVSDLDKALQFFVRMRYDDVEPVVYNFTYL 141

Query: 77  ISGFVQKKNMAKARDLF-LAMPEKNSVSWSAMI---SGYIECGQLDKAVELFKVAPVKSV 132
           +     +  +   +++  L +    S+   AM    + Y +C Q+++A ++F   P + +
Sbjct: 142 LKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDL 201

Query: 133 VAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGK 192
           V+W  +++GY      +N  A   L++++ M    ++P+  ++ SVL   S L  + +GK
Sbjct: 202 VSWNTIVAGY-----SQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGK 256

Query: 193 QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHG 252
           ++H    +S         T L+ MY KCG LE A +LF  +  ++VV+WN+MI  Y Q+ 
Sbjct: 257 EIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNE 316

Query: 253 KGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 292
             ++A+ +F KM DEG+KP  ++ +  L AC   G ++ G
Sbjct: 317 NPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERG 356



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 69/277 (24%), Positives = 117/277 (42%), Gaps = 48/277 (17%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIP----QPDVVSYNIMLSCILLNSDDVVAAF 59
           +T V+WN+++ GFA Q G+  DA   F ++     +PD  +Y  +++ I           
Sbjct: 401 RTLVSWNAMILGFA-QNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAI----------- 448

Query: 60  DFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDK 119
                L I   A W   I G V +  +           +KN    +A++  Y +CG +  
Sbjct: 449 ---AELSITHHAKW---IHGVVMRSCL-----------DKNVFVTTALVDMYAKCGAIMI 491

Query: 120 AVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVL 179
           A  +F +   + V  W AMI GY   G+      +  L+L   M    I+PN  +  SV+
Sbjct: 492 ARLIFDMMSERHVTTWNAMIDGYGTHGF-----GKAALELFEEMQKGTIKPNGVTFLSVI 546

Query: 180 LGCSHLSSLQLGKQVHQLV---FKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK 236
             CSH   ++ G +   ++   +   L  D      ++ +  + G L +A    +++  K
Sbjct: 547 SACSHSGLVEAGLKCFYMMKENYSIELSMDHYG--AMVDLLGRAGRLNEAWDFIMQMPVK 604

Query: 237 DVVT-WNAMISGYAQHGK---GEKAL-RLFDKMKDEG 268
             V  + AM+     H      EKA  RLF+   D+G
Sbjct: 605 PAVNVYGAMLGACQIHKNVNFAEKAAERLFELNPDDG 641



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 80/151 (52%), Gaps = 1/151 (0%)

Query: 186 SSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMI 245
           SSL+  +Q+  LVFK+ L ++    T L+S++C+ G +++A ++F  I  K  V ++ M+
Sbjct: 48  SSLKELRQILPLVFKNGLYQEHFFQTKLVSLFCRYGSVDEAARVFEPIDSKLNVLYHTML 107

Query: 246 SGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGI 305
            G+A+    +KAL+ F +M+ + ++P    F  LL  C     + +G +    +V   G 
Sbjct: 108 KGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKS-GF 166

Query: 306 AAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 336
           +      T + ++  +  ++ EA  +  +MP
Sbjct: 167 SLDLFAMTGLENMYAKCRQVNEARKVFDRMP 197


>gi|449455158|ref|XP_004145320.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
 gi|449470513|ref|XP_004152961.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
 gi|449523079|ref|XP_004168552.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 733

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 215/554 (38%), Positives = 328/554 (59%), Gaps = 16/554 (2%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCIL------LNSDD 54
           ++ K  V+WNS+++ FA Q    +DA ELF K+ + +V+  ++ +  +L      L+ + 
Sbjct: 187 ISCKDVVSWNSMISAFA-QGNCPEDALELFLKMERENVMPNSVTMVGVLSACAKKLDLEF 245

Query: 55  VVAAFDFFQRLPIK-DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE 113
                 + +R  IK D    N M+  + +  ++  A+ LF  MPE++  SW+ M+ GY +
Sbjct: 246 GRWVCSYIERKGIKVDLTLCNAMLDMYTKCGSVDDAQKLFDEMPERDVFSWTIMLDGYAK 305

Query: 114 CGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWA-EDGLKLLRMMIGLGIRPNA 172
            G  D A  +F   PVK + AW  +IS Y + G  + + A  + L+L ++      +P+ 
Sbjct: 306 MGDYDAARLVFNAMPVKEIAAWNVLISAYEQNGKPKEALAIFNELQLSKIA-----KPDE 360

Query: 173 SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLE 232
            +L S L  C+ L ++ LG  +H  + +  +  +   ++ L+ MY KCG LE A ++F  
Sbjct: 361 VTLVSTLSACAQLGAIDLGGWIHVYIKREGIVLNCHLISSLVDMYAKCGSLEKALEVFYS 420

Query: 233 IQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 292
           ++ +DV  W+AMI+G   HG+G+ A+ LF +M++  +KP+S+TF  +L AC+HAGLVD G
Sbjct: 421 VEERDVYVWSAMIAGLGMHGRGKAAIDLFFEMQEAKVKPNSVTFTNVLCACSHAGLVDEG 480

Query: 293 IQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACR 352
             +F  M   YG+  +  HY CMVD+LGRAG L EA++LI +M   P  +++G LL AC 
Sbjct: 481 RVFFHEMEPVYGVVPEMKHYACMVDILGRAGFLEEAMELINEMSTTPSASVWGALLGACS 540

Query: 353 VHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPG 412
           +H  ++L E A+  L  L P N  G  V L+NIYA   +W+ V+ +R  M++  + K PG
Sbjct: 541 LHMNVELGELASDQLLKLEPRN-HGAIVLLSNIYAKTGRWEKVSELRKLMRDTELKKEPG 599

Query: 413 YSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGE-EVKE 471
            S IE    VHEF  GD  HP   +I+ KL+E+  ++K  GY P+    L  + E ++KE
Sbjct: 600 CSSIEANGNVHEFLVGDNTHPLSSNIYSKLEEIATKLKSVGYEPNKSHLLQLIEEDDLKE 659

Query: 472 QLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRF 531
           Q L  HSEKLAIAFGL+ +    PIRV KNLR+CGDCH   K +S +  R+I++RD  RF
Sbjct: 660 QALSLHSEKLAIAFGLVTLAPSQPIRVVKNLRICGDCHAFAKLVSRVYDRDILLRDRYRF 719

Query: 532 HHFKDGTCSCGDYW 545
           HHF+DG CSC DYW
Sbjct: 720 HHFRDGHCSCMDYW 733



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 98/373 (26%), Positives = 167/373 (44%), Gaps = 72/373 (19%)

Query: 11  SVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFF------QR 64
           S L+ F+     L  A+ LFD+IPQP++ ++N ++     +SD   +   F       + 
Sbjct: 67  SALSSFST----LDYARNLFDQIPQPNLYTWNTLIRAYASSSDPFQSFVIFLDLLDKCED 122

Query: 65  LPIKDTASW-------------NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGY 111
           LP K T  +              T + G   K  ++   DL++          ++++  Y
Sbjct: 123 LPNKFTFPFVIKAASELKASRVGTAVHGMAIK--LSFGMDLYI---------LNSLVRFY 171

Query: 112 IECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPN 171
             CG L  A  LFK    K VV+W +MIS      + + +  ED L+L   M    + PN
Sbjct: 172 GACGDLSMAERLFKGISCKDVVSWNSMIS-----AFAQGNCPEDALELFLKMERENVMPN 226

Query: 172 ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFL 231
           + ++  VL  C+    L+ G+ V   + +  +  D T    ++ MY KCG ++DA KLF 
Sbjct: 227 SVTMVGVLSACAKKLDLEFGRWVCSYIERKGIKVDLTLCNAMLDMYTKCGSVDDAQKLFD 286

Query: 232 EIQRKDVVT-------------------------------WNAMISGYAQHGKGEKALRL 260
           E+  +DV +                               WN +IS Y Q+GK ++AL +
Sbjct: 287 EMPERDVFSWTIMLDGYAKMGDYDAARLVFNAMPVKEIAAWNVLISAYEQNGKPKEALAI 346

Query: 261 FDKMK-DEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLL 319
           F++++  +  KPD +T V+ L AC   G +DLG  +    +   GI       + +VD+ 
Sbjct: 347 FNELQLSKIAKPDEVTLVSTLSACAQLGAIDLG-GWIHVYIKREGIVLNCHLISSLVDMY 405

Query: 320 GRAGKLVEAVDLI 332
            + G L +A+++ 
Sbjct: 406 AKCGSLEKALEVF 418



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 69/220 (31%), Positives = 103/220 (46%), Gaps = 5/220 (2%)

Query: 117 LDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLS 176
           LD A  LF   P  ++  W  +I  Y        S+    +  L ++      PN  +  
Sbjct: 75  LDYARNLFDQIPQPNLYTWNTLIRAYASSSDPFQSF----VIFLDLLDKCEDLPNKFTFP 130

Query: 177 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK 236
            V+   S L + ++G  VH +  K     D   L  L+  Y  CGDL  A +LF  I  K
Sbjct: 131 FVIKAASELKASRVGTAVHGMAIKLSFGMDLYILNSLVRFYGACGDLSMAERLFKGISCK 190

Query: 237 DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYF 296
           DVV+WN+MIS +AQ    E AL LF KM+ E + P+S+T V +L AC     ++ G ++ 
Sbjct: 191 DVVSWNSMISAFAQGNCPEDALELFLKMERENVMPNSVTMVGVLSACAKKLDLEFG-RWV 249

Query: 297 DSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 336
            S +   GI         M+D+  + G + +A  L  +MP
Sbjct: 250 CSYIERKGIKVDLTLCNAMLDMYTKCGSVDDAQKLFDEMP 289


>gi|115463499|ref|NP_001055349.1| Os05g0370000 [Oryza sativa Japonica Group]
 gi|54287484|gb|AAV31228.1| unknown protein [Oryza sativa Japonica Group]
 gi|113578900|dbj|BAF17263.1| Os05g0370000 [Oryza sativa Japonica Group]
          Length = 664

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 218/552 (39%), Positives = 316/552 (57%), Gaps = 18/552 (3%)

Query: 5   TTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDV--VAAFDFF 62
             + WN +++G  +  G+ +DA     ++     +     +SC L    DV  VA  +  
Sbjct: 120 NVITWNGLVSGLNRS-GRARDAVLALVRMHGEGFLPDATGVSCALSAVGDVGDVAVGEQL 178

Query: 63  QRLPIK-----DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQL 117
               +K     D      +I  + +     +   +F      +  S +A+++G     Q+
Sbjct: 179 HGYVVKAGCRLDACVATALIDMYGKCGRADEIVRVFDESSHMDVASCNALVAGLSRNAQV 238

Query: 118 DKAVELFKVAPVK----SVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNAS 173
            +A+ LF+    +    +VV+WT++++       V+N    + + L R M   GI PN+ 
Sbjct: 239 SEALRLFREFVGRGIELNVVSWTSIVACC-----VQNGRDLEAVDLFREMQSEGIEPNSV 293

Query: 174 SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI 233
           ++  VL   +++++L  G+  H    +     D    + L+ MY KCG + DA  +F  +
Sbjct: 294 TIPCVLPAFANIAALMHGRSAHCFSLRKGFHHDIYVGSALVDMYAKCGRVRDARMIFEAM 353

Query: 234 QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGI 293
             ++VV+WNAMI GYA HG+ E A+RLF  M+    KPD +TF  +L AC+ AG  + G 
Sbjct: 354 PYRNVVSWNAMIGGYAMHGEAENAVRLFRSMQSSKEKPDLVTFTCVLGACSQAGWTEEGR 413

Query: 294 QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRV 353
            YF+ M + +GI+ + +HY CMV LLGRAGKL +A D+I +MPF+P   I+G+LL +CRV
Sbjct: 414 SYFNEMQHKHGISPRMEHYACMVTLLGRAGKLDDAYDIINQMPFEPDGCIWGSLLGSCRV 473

Query: 354 HKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGY 413
           H  + LAE AA NLF L P NA G YV L+NIYA+ K WD V R+R  MK   + K  G 
Sbjct: 474 HGNVVLAEVAAENLFQLEPENA-GNYVLLSNIYASKKMWDGVNRLRDMMKTVGLKKEKGC 532

Query: 414 SWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQL 473
           SWIE+   VH   +GD  HP + +I EKLK L   M+  G+ P  ++ LH V E+ K+ +
Sbjct: 533 SWIEIKNKVHMLLAGDSSHPMMAAITEKLKHLTMEMRRLGFAPSTDYVLHDVEEQEKDDI 592

Query: 474 LLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHH 533
           L  HSEKLA+A GLI    GTP++V KNLR+CGDCH A K+IS+ E+REI VRDT RFHH
Sbjct: 593 LSVHSEKLAVALGLISTSHGTPLQVIKNLRICGDCHEAMKFISSFERREIYVRDTNRFHH 652

Query: 534 FKDGTCSCGDYW 545
           FKDG CSC DYW
Sbjct: 653 FKDGKCSCADYW 664



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 62/241 (25%), Positives = 118/241 (48%), Gaps = 13/241 (5%)

Query: 68  KDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFK-- 125
           +D    ++++  +++    A AR +   MP +  V WSA+I+ +   G  + A  L +  
Sbjct: 53  RDAFVASSLLHAYLRFGATADARSVLDGMPHRTVVGWSALIAAHASHGDAEGAWGLLERM 112

Query: 126 ----VAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLG 181
               V P  +V+ W  ++SG  + G      A D +  L  M G G  P+A+ +S  L  
Sbjct: 113 RSDGVEP--NVITWNGLVSGLNRSGR-----ARDAVLALVRMHGEGFLPDATGVSCALSA 165

Query: 182 CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTW 241
              +  + +G+Q+H  V K+    D    T LI MY KCG  ++  ++F E    DV + 
Sbjct: 166 VGDVGDVAVGEQLHGYVVKAGCRLDACVATALIDMYGKCGRADEIVRVFDESSHMDVASC 225

Query: 242 NAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN 301
           NA+++G +++ +  +ALRLF +    G++ + +++ +++  C   G     +  F  M +
Sbjct: 226 NALVAGLSRNAQVSEALRLFREFVGRGIELNVVSWTSIVACCVQNGRDLEAVDLFREMQS 285

Query: 302 D 302
           +
Sbjct: 286 E 286



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/123 (26%), Positives = 61/123 (49%), Gaps = 5/123 (4%)

Query: 205 KDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKM 264
           +D    + L+  Y + G   DA  +   +  + VV W+A+I+ +A HG  E A  L ++M
Sbjct: 53  RDAFVASSLLHAYLRFGATADARSVLDGMPHRTVVGWSALIAAHASHGDAEGAWGLLERM 112

Query: 265 KDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPD--HYTCMVDLLGRA 322
           + +G++P+ IT+  L+   N +G     +    ++V  +G    PD    +C +  +G  
Sbjct: 113 RSDGVEPNVITWNGLVSGLNRSGRARDAVL---ALVRMHGEGFLPDATGVSCALSAVGDV 169

Query: 323 GKL 325
           G +
Sbjct: 170 GDV 172



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 59/135 (43%), Gaps = 7/135 (5%)

Query: 205 KDTTALTPLISMYCKCGDLEDACKLFLEIQRKD-----VVTWNAMISGYAQHGKGEKALR 259
           +     + LI+ +   GD E A  L LE  R D     V+TWN ++SG  + G+   A+ 
Sbjct: 84  RTVVGWSALIAAHASHGDAEGAWGL-LERMRSDGVEPNVITWNGLVSGLNRSGRARDAVL 142

Query: 260 LFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLL 319
              +M  EG  PD+      L A    G V +G Q    +V   G        T ++D+ 
Sbjct: 143 ALVRMHGEGFLPDATGVSCALSAVGDVGDVAVGEQLHGYVVK-AGCRLDACVATALIDMY 201

Query: 320 GRAGKLVEAVDLIKK 334
           G+ G+  E V +  +
Sbjct: 202 GKCGRADEIVRVFDE 216


>gi|224137958|ref|XP_002322694.1| predicted protein [Populus trichocarpa]
 gi|222867324|gb|EEF04455.1| predicted protein [Populus trichocarpa]
          Length = 586

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 221/547 (40%), Positives = 320/547 (58%), Gaps = 33/547 (6%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  +  V+W ++++G++ QRG   +A  LF +                +L SD     F 
Sbjct: 71  MRERNVVSWTAMISGYS-QRGFASEALHLFVQ----------------MLRSDTEPNEFT 113

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
           F   L      S  T  SGF   + +     +F    E +    S+++  Y + G++ +A
Sbjct: 114 FATVL------SSCTGFSGFELGRQIHS--HIFKRNYENHIFVGSSLLDMYAKAGRIHEA 165

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLL 180
             +F+  P + VV+ TA+ISGY + G       E+ L+L   +   G+  N  + +S+L 
Sbjct: 166 RGVFECLPERDVVSCTAIISGYAQLG-----LDEEALELFCRLQREGMSSNYVTYASLLT 220

Query: 181 GCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVT 240
             S L++L  GKQVH  V +  L         LI MY KCG+L  A K+F  +  + V++
Sbjct: 221 ALSGLAALDHGKQVHSHVLRCELPFYVVLQNSLIDMYSKCGNLNYARKIFNNMPVRTVIS 280

Query: 241 WNAMISGYAQHGKGEKALRLFDKMKDEG-MKPDSITFVALLLACNHAGLVDLGIQYFDSM 299
           WNAM+ GY++HGKG + ++LF  M++E  +KPDS+TF+A+L  C+H GL D G++ FD M
Sbjct: 281 WNAMLVGYSKHGKGIEVVKLFKLMREENKVKPDSVTFLAVLSGCSHGGLEDKGLEMFDEM 340

Query: 300 VNDYG-IAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLD 358
           +N    I A  +HY C++DLLGRAG++ EA +LIKKMPF+P  AI+G+LL ACRVH   +
Sbjct: 341 MNGGDEIEAGIEHYGCVIDLLGRAGRVEEAFELIKKMPFEPTAAIWGSLLGACRVHSNTN 400

Query: 359 LAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEV 418
           + EF    L  + P NA G YV L+N+YA+  +W+DV  +R  M E  V+K PG SWIE+
Sbjct: 401 IGEFVGCRLLEIEPENA-GNYVILSNLYASAGRWEDVRNVRELMMEKAVIKEPGRSWIEL 459

Query: 419 GTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHS 478
              +H F + DR HP    +  K++EL  + K +GYVPD    L+ V EE KE++LL HS
Sbjct: 460 DQTIHTFYASDRSHPRREEVFLKVRELLVKFKESGYVPDQSCVLYDVDEEQKEKILLGHS 519

Query: 479 EKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGT 538
           EKLA+AFGLI    G P+RV KNLR+C DCH   K++S +  R++ +RD  RFHH   G 
Sbjct: 520 EKLALAFGLISTSEGVPLRVIKNLRICVDCHNFAKFVSKVYGRQVSIRDKNRFHHVAGGI 579

Query: 539 CSCGDYW 545
           CSCGDYW
Sbjct: 580 CSCGDYW 586



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 74/238 (31%), Positives = 122/238 (51%), Gaps = 14/238 (5%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI 164
           + +I  Y +C  L  A  +F     ++VV+WTAMISGY + G+     A + L L   M+
Sbjct: 49  TRLIILYTKCECLGCARHVFDEMRERNVVSWTAMISGYSQRGF-----ASEALHLFVQML 103

Query: 165 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 224
                PN  + ++VL  C+  S  +LG+Q+H  +FK          + L+ MY K G + 
Sbjct: 104 RSDTEPNEFTFATVLSSCTGFSGFELGRQIHSHIFKRNYENHIFVGSSLLDMYAKAGRIH 163

Query: 225 DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 284
           +A  +F  +  +DVV+  A+ISGYAQ G  E+AL LF +++ EGM  + +T+ +LL A +
Sbjct: 164 EARGVFECLPERDVVSCTAIISGYAQLGLDEEALELFCRLQREGMSSNYVTYASLLTALS 223

Query: 285 HAGLVDLGIQYFDSMVNDYGIAAKPDHY----TCMVDLLGRAGKLVEAVDLIKKMPFK 338
               +D G Q     V+ + +  +   Y      ++D+  + G L  A  +   MP +
Sbjct: 224 GLAALDHGKQ-----VHSHVLRCELPFYVVLQNSLIDMYSKCGNLNYARKIFNNMPVR 276



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 83/159 (52%), Gaps = 9/159 (5%)

Query: 182 CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTW 241
           C +  +++ G++VH  + K+         T LI +Y KC  L  A  +F E++ ++VV+W
Sbjct: 20  CVNKRAVREGQRVHAHMIKTCYLPPVYLSTRLIILYTKCECLGCARHVFDEMRERNVVSW 79

Query: 242 NAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV- 300
            AMISGY+Q G   +AL LF +M     +P+  TF  +L +C      +LG Q    +  
Sbjct: 80  TAMISGYSQRGFASEALHLFVQMLRSDTEPNEFTFATVLSSCTGFSGFELGRQIHSHIFK 139

Query: 301 NDYGIAAKPDHY---TCMVDLLGRAGKLVEAVDLIKKMP 336
            +Y      +H    + ++D+  +AG++ EA  + + +P
Sbjct: 140 RNY-----ENHIFVGSSLLDMYAKAGRIHEARGVFECLP 173


>gi|302765332|ref|XP_002966087.1| hypothetical protein SELMODRAFT_84768 [Selaginella moellendorffii]
 gi|300166901|gb|EFJ33507.1| hypothetical protein SELMODRAFT_84768 [Selaginella moellendorffii]
          Length = 449

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 202/450 (44%), Positives = 284/450 (63%), Gaps = 6/450 (1%)

Query: 96  MPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAED 155
           +   N++  +A+++ Y+ CG L++A ++F         +WT MI+        EN    +
Sbjct: 6   LKSSNAILENALLNMYVRCGSLEEARKVFDAMDHPDAFSWTNMITAC-----TENCELLE 60

Query: 156 GLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLIS 215
            L+L   M   GI P + +L+SVL  C+   +L++GKQ+H  +  S       A T L+ 
Sbjct: 61  ALELFHRMNLEGIPPTSVTLASVLNACACSGALKVGKQIHSRLDASGFHSSVLAQTALLD 120

Query: 216 MYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSIT 275
           MY KCG LE + K+F  ++ ++ V+W AMI+  AQHG+G++AL LF +M  EGM  D+ T
Sbjct: 121 MYAKCGSLECSSKVFTAMETRNSVSWTAMIAALAQHGQGDEALELFKEMNLEGMVADATT 180

Query: 276 FVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335
           F+ +L AC+HAGL+   +++F SMV DY IA    HY   +D +GRAG+L +A +LI  M
Sbjct: 181 FICVLRACSHAGLIKESLEFFHSMVEDYAIAPTETHYCRALDTIGRAGRLQDAEELIHSM 240

Query: 336 PFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDV 395
           PF P+   + TLL+ACR+H + + A   A  L  L P ++   Y  L N+YAA +++ D 
Sbjct: 241 PFHPETVTWKTLLNACRIHSQAERATKVAELLAKLAPEDSMA-YTLLGNVYAATERYGDQ 299

Query: 396 ARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYV 455
            R+R SM +  + K+PG S+IEV   VHEF +GDR HP    I  +L++L  RM+ AGYV
Sbjct: 300 MRVRKSMTDRGLKKVPGKSFIEVKNKVHEFVAGDRAHPSRDEILLELEKLGGRMREAGYV 359

Query: 456 PDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYI 515
           P+ +  LHAV EE KEQL+  HSEKLAIAFGLI  P GTP+ + KNLRVC DCH ATK I
Sbjct: 360 PNTKDVLHAVNEEEKEQLIGLHSEKLAIAFGLIATPPGTPLLIVKNLRVCSDCHAATKVI 419

Query: 516 SAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           + I +R I+VRDT RFHHF+DG CSC DYW
Sbjct: 420 AKIMRRRIVVRDTHRFHHFEDGQCSCKDYW 449



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 58/259 (22%), Positives = 123/259 (47%), Gaps = 30/259 (11%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMI--- 77
           G L++A+++FD +  PD  S+  M++    N  +++ A + F R+ ++     +  +   
Sbjct: 25  GSLEEARKVFDAMDHPDAFSWTNMITACTENC-ELLEALELFHRMNLEGIPPTSVTLASV 83

Query: 78  ------SGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKS 131
                 SG ++      +R L  +    + ++ +A++  Y +CG L+ + ++F     ++
Sbjct: 84  LNACACSGALKVGKQIHSR-LDASGFHSSVLAQTALLDMYAKCGSLECSSKVFTAMETRN 142

Query: 132 VVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLG 191
            V+WTAMI+   + G       ++ L+L + M   G+  +A++   VL  CSH   ++  
Sbjct: 143 SVSWTAMIAALAQHG-----QGDEALELFKEMNLEGMVADATTFICVLRACSHAGLIK-- 195

Query: 192 KQVHQLVFKSPLCKDTTALTPLISMYC-------KCGDLEDACKLFLEIQ-RKDVVTWNA 243
                L F   + +D  A+ P  + YC       + G L+DA +L   +    + VTW  
Sbjct: 196 ---ESLEFFHSMVED-YAIAPTETHYCRALDTIGRAGRLQDAEELIHSMPFHPETVTWKT 251

Query: 244 MISGYAQHGKGEKALRLFD 262
           +++    H + E+A ++ +
Sbjct: 252 LLNACRIHSQAERATKVAE 270


>gi|297739586|emb|CBI29768.3| unnamed protein product [Vitis vinifera]
          Length = 676

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 213/500 (42%), Positives = 301/500 (60%), Gaps = 21/500 (4%)

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISGYIE 113
           A + F R+ I+D   W  MI+ + Q +   KA  LF  M E+    + ++  ++ S   +
Sbjct: 186 AHEVFDRMLIRDVVCWTAMITLYEQAERPLKALMLFRKMQEEGFLGDEITAISVASAVGQ 245

Query: 114 CGQ----LDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIR 169
            G     + +A  +F     ++ ++W +M+SGY      +N    D L L   M      
Sbjct: 246 LGDGRMAISRARLVFDRMEERNGISWNSMLSGY-----TQNGRPTDALSLFNQMQASECD 300

Query: 170 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 229
           PN  +   ++  CS+L S  LG+++H  V  S +  DTT    ++ MY KCGDL+ A ++
Sbjct: 301 PNPVTALIMVSACSYLGSKHLGRKLHNFVISSKMDIDTTLRNAIMDMYMKCGDLDTAVEM 360

Query: 230 F--LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG 287
           F   E+  +DV +WN +ISGY  HG G++AL LF +M+ EG++P+ ITF ++L AC+HAG
Sbjct: 361 FNNCELGERDVSSWNVLISGYGVHGHGKEALELFSRMQVEGVEPNDITFTSILSACSHAG 420

Query: 288 LVDLGIQYFDSMVNDYGIAAKPD--HYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFG 345
           L+D G + F  M     ++ +P+  HY CMVD+LGRAG L EA  LIKK+P +P   ++G
Sbjct: 421 LIDEGRKCFADMTK---LSVRPEMKHYACMVDMLGRAGFLNEAFRLIKKIPSRPSDEVWG 477

Query: 346 TLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKEN 405
            LL ACR+H   +L E AA NLF L P +  G YV ++NIYAA  KW +V  +R +MK  
Sbjct: 478 ALLLACRIHGNTELGEIAANNLFQLEPEHT-GYYVLMSNIYAASNKWKEVEMVRQNMKSR 536

Query: 406 NVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAV 465
            + K   +S IE GT VH F + D+  P    ++ K++ L   MK+ GYVPDL   LH V
Sbjct: 537 GLKKPAAFSVIEFGTEVHGFHTADQSSPYYREVYRKVESLAIEMKMVGYVPDLSCVLHDV 596

Query: 466 GEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIV 525
             E KE LL +HSEKLA+AFG++K+  G PI+V KNLRVC DCH A K+IS+I  R+IIV
Sbjct: 597 EPEDKEHLLNYHSEKLAVAFGIMKMDQGMPIQVTKNLRVCSDCHWAFKFISSIYGRKIIV 656

Query: 526 RDTTRFHHFKDGTCSCGDYW 545
           RD  RFHHF+ G CSCGDYW
Sbjct: 657 RDGNRFHHFQGGRCSCGDYW 676



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 69/251 (27%), Positives = 107/251 (42%), Gaps = 15/251 (5%)

Query: 111 YIECGQLDKAVELFKVAPVKSVV---AWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLG 167
           Y + G L  A  LF            A  + +   M   Y     + + + L   M  +G
Sbjct: 68  YSKLGDLHSARTLFDHRHHHHHGHTQAPNSFLCNTMLRAYANAGRSYEAIDLYIYMQRMG 127

Query: 168 IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC 227
           +  N  +   VL  C+       G+ VH  V ++    D      L+ MY KCG++ DA 
Sbjct: 128 VGVNNFTYPFVLKVCASELGAVFGEVVHGQVVRTGFGSDLFVEAALVDMYAKCGEIGDAH 187

Query: 228 KLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG 287
           ++F  +  +DVV W AMI+ Y Q  +  KAL LF KM++EG   D IT +++  A    G
Sbjct: 188 EVFDRMLIRDVVCWTAMITLYEQAERPLKALMLFRKMQEEGFLGDEITAISVASAVGQLG 247

Query: 288 LVDLGIQ----YFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK---PQ 340
              + I      FD M    GI+     +  M+    + G+  +A+ L  +M      P 
Sbjct: 248 DGRMAISRARLVFDRMEERNGIS-----WNSMLSGYTQNGRPTDALSLFNQMQASECDPN 302

Query: 341 PAIFGTLLSAC 351
           P     ++SAC
Sbjct: 303 PVTALIMVSAC 313



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/261 (23%), Positives = 119/261 (45%), Gaps = 15/261 (5%)

Query: 5   TTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNS--DDVVAAFDFF 62
           T ++  S +      R  +  A+ +FD++ + + +S+N MLS    N    D ++ F+  
Sbjct: 235 TAISVASAVGQLGDGRMAISRARLVFDRMEERNGISWNSMLSGYTQNGRPTDALSLFNQM 294

Query: 63  QRL---PIKDTASWNTMISGFVQKKNMAKARDLFL--AMPEKNSVSWSAMISGYIECGQL 117
           Q     P   TA        ++  K++ +    F+  +  + ++   +A++  Y++CG L
Sbjct: 295 QASECDPNPVTALIMVSACSYLGSKHLGRKLHNFVISSKMDIDTTLRNAIMDMYMKCGDL 354

Query: 118 DKAVELFKVAPV--KSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSL 175
           D AVE+F    +  + V +W  +ISGY   G+      ++ L+L   M   G+ PN  + 
Sbjct: 355 DTAVEMFNNCELGERDVSSWNVLISGYGVHGH-----GKEALELFSRMQVEGVEPNDITF 409

Query: 176 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI-Q 234
           +S+L  CSH   +  G++    + K  +  +      ++ M  + G L +A +L  +I  
Sbjct: 410 TSILSACSHAGLIDEGRKCFADMTKLSVRPEMKHYACMVDMLGRAGFLNEAFRLIKKIPS 469

Query: 235 RKDVVTWNAMISGYAQHGKGE 255
           R     W A++     HG  E
Sbjct: 470 RPSDEVWGALLLACRIHGNTE 490


>gi|302793246|ref|XP_002978388.1| hypothetical protein SELMODRAFT_108652 [Selaginella moellendorffii]
 gi|300153737|gb|EFJ20374.1| hypothetical protein SELMODRAFT_108652 [Selaginella moellendorffii]
          Length = 687

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 208/532 (39%), Positives = 313/532 (58%), Gaps = 17/532 (3%)

Query: 24  KDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP----IKDTASWNTMISG 79
           ++A ++F ++ Q ++++++ +++    +      A  +F+ +     + +  ++ ++++G
Sbjct: 163 ENAAQVFGRMKQKNLITWSAIITA-FADHGHCGEALRYFRMMQQEGILPNRVTFISLLNG 221

Query: 80  FVQKKNMAKARDLFLAMPEKNSVSWSAM------ISGYIECGQLDKAVELFKVAPVKSVV 133
           F     + +   + L + E      + M      + G  E G+LD A  + +    + + 
Sbjct: 222 FTTPSGLEELSRIHLLITEHGLDDTTTMSNALVNVYGRCETGELDVAEVILQEMDEQQIT 281

Query: 134 AWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ 193
           AW  +I+GY   G      + + L+  + +    I  +  +  SVL  C+  +SL  GK 
Sbjct: 282 AWNVLINGYTLHGR-----SREALETYQRLQLEAIPVDKVTFISVLNACTSSTSLAEGKM 336

Query: 194 VHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGK 253
           +H    +  L  D      L +MY KCG +E+A ++F  +  +  V+WN M+  YAQHG+
Sbjct: 337 IHSNAVECGLDSDVIVKNALTNMYSKCGSMENARRIFDSMPIRSAVSWNGMLQAYAQHGE 396

Query: 254 GEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYT 313
            E+ L+L  KM+ EG+K + ITFV++L +C+HAGL+  G QYF S+ +D GI  K +HY 
Sbjct: 397 SEEVLKLIRKMEQEGVKLNGITFVSVLSSCSHAGLIAEGCQYFHSLGHDRGIEVKTEHYG 456

Query: 314 CMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPA 373
           C+VDLLGRAGKL EA   I KMP +P+   + +LL ACRVHK LD  + AA  L  L+P 
Sbjct: 457 CLVDLLGRAGKLQEAEKYISKMPSEPEIVTWASLLGACRVHKDLDRGKLAARKLLELDPG 516

Query: 374 NAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHP 433
           N++   V L+NIY+    W + A++R +M    V K+PG S I+V   VHEFR  D  HP
Sbjct: 517 NSSASVV-LSNIYSERGDWKNAAKLRRAMASRRVKKVPGISSIQVKNKVHEFRVRDTSHP 575

Query: 434 ELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLG 493
               I++K++EL   M+ AGYVPD +  LH V EE KE LL +HSEKLAIAFGLI  P  
Sbjct: 576 RAAEIYDKVEELCFAMREAGYVPDTKMVLHDVDEEQKESLLAYHSEKLAIAFGLISTPEK 635

Query: 494 TPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           + + +FKNLRVC DCH ATK+IS I  REI+VRD  RFHHF+DG+CSC DYW
Sbjct: 636 SSLHIFKNLRVCEDCHTATKFISKITGREIVVRDNHRFHHFRDGSCSCKDYW 687



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 84/348 (24%), Positives = 170/348 (48%), Gaps = 17/348 (4%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK- 68
           N+ L     + G L DA+++FD +P   V ++N M+S   + S+    AF  FQR+  + 
Sbjct: 48  NTALVNTYTKCGSLTDARKVFDGMPCRSVGTWNSMISAYSI-SERSGEAFFIFQRMQHEG 106

Query: 69  ---DTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISGYIECGQLDKAV 121
              D  ++ +++   V  +N+   + +  ++ E     +    +A+I+ Y  C   + A 
Sbjct: 107 ERCDRVTFLSILDACVNPENLQHGKHVRESISETSFELDLFVGTALITMYARCRSPENAA 166

Query: 122 ELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLG 181
           ++F     K+++ W+A+I+ +   G+       + L+  RMM   GI PN  +  S+L G
Sbjct: 167 QVFGRMKQKNLITWSAIITAFADHGH-----CGEALRYFRMMQQEGILPNRVTFISLLNG 221

Query: 182 CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMY--CKCGDLEDACKLFLEIQRKDVV 239
            +  S L+   ++H L+ +  L   TT    L+++Y  C+ G+L+ A  +  E+  + + 
Sbjct: 222 FTTPSGLEELSRIHLLITEHGLDDTTTMSNALVNVYGRCETGELDVAEVILQEMDEQQIT 281

Query: 240 TWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSM 299
            WN +I+GY  HG+  +AL  + +++ E +  D +TF+++L AC  +  +  G     + 
Sbjct: 282 AWNVLINGYTLHGRSREALETYQRLQLEAIPVDKVTFISVLNACTSSTSLAEGKMIHSNA 341

Query: 300 VNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTL 347
           V + G+ +       + ++  + G +  A  +   MP +   +  G L
Sbjct: 342 V-ECGLDSDVIVKNALTNMYSKCGSMENARRIFDSMPIRSAVSWNGML 388



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 73/255 (28%), Positives = 137/255 (53%), Gaps = 11/255 (4%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI 164
           +A+++ Y +CG L  A ++F   P +SV  W +MIS Y      E S   +   + + M 
Sbjct: 49  TALVNTYTKCGSLTDARKVFDGMPCRSVGTWNSMISAY---SISERSG--EAFFIFQRMQ 103

Query: 165 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 224
             G R +  +  S+L  C +  +LQ GK V + + ++    D    T LI+MY +C   E
Sbjct: 104 HEGERCDRVTFLSILDACVNPENLQHGKHVRESISETSFELDLFVGTALITMYARCRSPE 163

Query: 225 DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA-C 283
           +A ++F  +++K+++TW+A+I+ +A HG   +ALR F  M+ EG+ P+ +TF++LL    
Sbjct: 164 NAAQVFGRMKQKNLITWSAIITAFADHGHCGEALRYFRMMQQEGILPNRVTFISLLNGFT 223

Query: 284 NHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGR--AGKLVEAVDLIKKMPFKPQP 341
             +GL +L   +   ++ ++G+         +V++ GR   G+L  A  ++++M  + Q 
Sbjct: 224 TPSGLEELSRIHL--LITEHGLDDTTTMSNALVNVYGRCETGELDVAEVILQEMD-EQQI 280

Query: 342 AIFGTLLSACRVHKR 356
             +  L++   +H R
Sbjct: 281 TAWNVLINGYTLHGR 295



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 42/121 (34%), Positives = 68/121 (56%)

Query: 163 MIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGD 222
           M+  G++ N  +  +VL       +L+ GK +H  V +S    D    T L++ Y KCG 
Sbjct: 1   MLLEGVKANVITFLNVLNSVVDPDALRKGKFIHSCVRESEHSLDVFVNTALVNTYTKCGS 60

Query: 223 LEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA 282
           L DA K+F  +  + V TWN+MIS Y+   +  +A  +F +M+ EG + D +TF+++L A
Sbjct: 61  LTDARKVFDGMPCRSVGTWNSMISAYSISERSGEAFFIFQRMQHEGERCDRVTFLSILDA 120

Query: 283 C 283
           C
Sbjct: 121 C 121


>gi|356561464|ref|XP_003549001.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Glycine max]
          Length = 673

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 209/484 (43%), Positives = 293/484 (60%), Gaps = 13/484 (2%)

Query: 68  KDTASWNTMISGFVQKKNMAKARDLFLAM----PEKNSVSWSAMISGYIECGQLD--KAV 121
           KD  SWN+M++G+ Q      A D+   M     + ++ + ++++         +     
Sbjct: 197 KDVVSWNSMVAGYAQNMQFDDALDICREMDGVRQKPDACTMASLLPAVTNTSSENVLYVE 256

Query: 122 ELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLG 181
           E+F     KS+V+W  MIS YMK     NS     + L   M    + P+A + +SVL  
Sbjct: 257 EMFMNLEKKSLVSWNVMISVYMK-----NSMPGKSVDLYLQMGKCEVEPDAITCASVLRA 311

Query: 182 CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTW 241
           C  LS+L LG+++H+ V +  LC +      LI MY +CG LEDA ++F  ++ +DV +W
Sbjct: 312 CGDLSALLLGRRIHEYVERKKLCPNMLLENSLIDMYARCGCLEDAKRVFDRMKFRDVASW 371

Query: 242 NAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN 301
            ++IS Y   G+G  A+ LF +M++ G  PDSI FVA+L AC+H+GL++ G  YF  M +
Sbjct: 372 TSLISAYGMTGQGYNAVALFTEMQNSGQSPDSIAFVAILSACSHSGLLNEGKFYFKQMTD 431

Query: 302 DYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAE 361
           DY I    +H+ C+VDLLGR+G++ EA ++IK+MP KP   ++G LLS+CRV+  +D+  
Sbjct: 432 DYKITPIIEHFACLVDLLGRSGRVDEAYNIIKQMPMKPNERVWGALLSSCRVYSNMDIGI 491

Query: 362 FAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTV 421
            AA  L  L P   +G YV L+NIYA   +W +V  IR  MK   + KMPG S +E+   
Sbjct: 492 LAADKLLQLAP-EESGYYVLLSNIYAKAGRWTEVTAIRSLMKRRRIRKMPGISNVELNNQ 550

Query: 422 VHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKL 481
           VH F +GD  HP+   I+E+L  L  +MK  GYVP  + ALH V EE KE  L  HSEKL
Sbjct: 551 VHTFLAGDTYHPQSKEIYEELSVLVGKMKELGYVPKTDSALHDVEEEDKECHLAVHSEKL 610

Query: 482 AIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSC 541
           AI F ++     +PIR+ KNLRVCGDCH A K IS I +REI++RDT RFHHFKDG CSC
Sbjct: 611 AIVFAILNTQ-ESPIRITKNLRVCGDCHIAAKLISKIVQREIVIRDTNRFHHFKDGICSC 669

Query: 542 GDYW 545
           GDYW
Sbjct: 670 GDYW 673



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 61/176 (34%), Positives = 95/176 (53%), Gaps = 5/176 (2%)

Query: 107 MISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGL 166
           ++  Y   G+   A  +F V P ++V+ +  MI  YM      N   +D L + R M+  
Sbjct: 73  LMRAYAARGEPGLARNVFDVIPERNVIFYNVMIRSYMN-----NHLYDDALLVFRDMVSG 127

Query: 167 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 226
           G  P+  +   VL  CS   +L++G Q+H  VFK  L  +      LI++Y KCG L +A
Sbjct: 128 GFSPDHYTYPCVLKACSCSDNLRIGLQLHGAVFKVGLDLNLFVGNGLIALYGKCGCLPEA 187

Query: 227 CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA 282
             +  E+Q KDVV+WN+M++GYAQ+ + + AL +  +M     KPD+ T  +LL A
Sbjct: 188 RCVLDEMQSKDVVSWNSMVAGYAQNMQFDDALDICREMDGVRQKPDACTMASLLPA 243



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 92/390 (23%), Positives = 158/390 (40%), Gaps = 88/390 (22%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQEL---FDKIPQ-PDVVSYNIMLSCIL-LNSDDV 55
           M  K  V+WNS++AG+A Q  +  DA ++    D + Q PD  +   +L  +   +S++V
Sbjct: 194 MQSKDVVSWNSMVAGYA-QNMQFDDALDICREMDGVRQKPDACTMASLLPAVTNTSSENV 252

Query: 56  VAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM------PE----------- 98
           +   + F  L  K   SWN MIS +++     K+ DL+L M      P+           
Sbjct: 253 LYVEEMFMNLEKKSLVSWNVMISVYMKNSMPGKSVDLYLQMGKCEVEPDAITCASVLRAC 312

Query: 99  ----------------------KNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWT 136
                                  N +  +++I  Y  CG L+ A  +F     + V +WT
Sbjct: 313 GDLSALLLGRRIHEYVERKKLCPNMLLENSLIDMYARCGCLEDAKRVFDRMKFRDVASWT 372

Query: 137 AMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQ 196
           ++IS Y   G   N+ A     L   M   G  P++ +  ++L  CSH   L  GK    
Sbjct: 373 SLISAYGMTGQGYNAVA-----LFTEMQNSGQSPDSIAFVAILSACSHSGLLNEGK---- 423

Query: 197 LVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEK 256
             FK     D   +TP+I  +        AC                ++    + G+ ++
Sbjct: 424 FYFKQ--MTDDYKITPIIEHF--------AC----------------LVDLLGRSGRVDE 457

Query: 257 ALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMV 316
           A  +  +M    MKP+   + ALL +C     +D+GI   D ++       +  +Y  + 
Sbjct: 458 AYNIIKQMP---MKPNERVWGALLSSCRVYSNMDIGILAADKLLQ--LAPEESGYYVLLS 512

Query: 317 DLLGRAGKLVEAV---DLIKKMPFKPQPAI 343
           ++  +AG+  E      L+K+   +  P I
Sbjct: 513 NIYAKAGRWTEVTAIRSLMKRRRIRKMPGI 542



 Score = 47.4 bits (111), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 66/147 (44%), Gaps = 1/147 (0%)

Query: 192 KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQH 251
           K VH  VF     ++ +    L+  Y   G+   A  +F  I  ++V+ +N MI  Y  +
Sbjct: 52  KNVHSKVFNLSFHENPSLGIKLMRAYAARGEPGLARNVFDVIPERNVIFYNVMIRSYMNN 111

Query: 252 GKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDH 311
              + AL +F  M   G  PD  T+  +L AC+ +  + +G+Q     V   G+      
Sbjct: 112 HLYDDALLVFRDMVSGGFSPDHYTYPCVLKACSCSDNLRIGLQ-LHGAVFKVGLDLNLFV 170

Query: 312 YTCMVDLLGRAGKLVEAVDLIKKMPFK 338
              ++ L G+ G L EA  ++ +M  K
Sbjct: 171 GNGLIALYGKCGCLPEARCVLDEMQSK 197


>gi|20197649|gb|AAM15176.1| putative selenium-binding protein [Arabidopsis thaliana]
          Length = 472

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 200/450 (44%), Positives = 288/450 (64%), Gaps = 8/450 (1%)

Query: 98  EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGL 157
           E++S   +A++  Y++ G++++A ++F     K +VAW+AM++GY + G  E +     +
Sbjct: 29  ERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGETEAA-----I 83

Query: 158 KLLRMMIGLGIRPNASSLSSVLLGCSHL-SSLQLGKQVHQLVFKSPLCKDTTALTPLISM 216
           K+   +   GI+PN  + SS+L  C+   +S+  GKQ H    KS L       + L++M
Sbjct: 84  KMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLDSSLCVSSALLTM 143

Query: 217 YCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITF 276
           Y K G++E A ++F   + KD+V+WN+MISGYAQHG+  KAL +F +MK   +K D +TF
Sbjct: 144 YAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDGVTF 203

Query: 277 VALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 336
           + +  AC HAGLV+ G +YFD MV D  IA   +H +CMVDL  RAG+L +A+ +I+ MP
Sbjct: 204 IGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIENMP 263

Query: 337 FKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVA 396
                 I+ T+L+ACRVHK+ +L   AA  +  + P ++A  YV L+N+YA    W + A
Sbjct: 264 NPAGSTIWRTILAACRVHKKTELGRLAAEKIIAMKPEDSAA-YVLLSNMYAESGDWQERA 322

Query: 397 RIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVP 456
           ++R  M E NV K PGYSWIEV    + F +GDR HP    I+ KL++L  R+K  GY P
Sbjct: 323 KVRKLMNERNVKKEPGYSWIEVKNKTYSFLAGDRSHPLKDQIYMKLEDLSTRLKDLGYEP 382

Query: 457 DLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYIS 516
           D  + L  + +E KE +L  HSE+LAIAFGLI  P G+P+ + KNLRVCGDCH   K I+
Sbjct: 383 DTSYVLQDIDDEHKEAVLAQHSERLAIAFGLIATPKGSPLLIIKNLRVCGDCHLVIKLIA 442

Query: 517 AIEKREIIVRDTTRFHHF-KDGTCSCGDYW 545
            IE+REI+VRD+ RFHHF  DG CSCGD+W
Sbjct: 443 KIEEREIVVRDSNRFHHFSSDGVCSCGDFW 472



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 36/91 (39%), Positives = 58/91 (63%)

Query: 193 QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHG 252
           +VH  V K+   + +T  T L+  Y K G +E+A K+F  I  KD+V W+AM++GYAQ G
Sbjct: 18  EVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTG 77

Query: 253 KGEKALRLFDKMKDEGMKPDSITFVALLLAC 283
           + E A+++F ++   G+KP+  TF ++L  C
Sbjct: 78  ETEAAIKMFGELTKGGIKPNEFTFSSILNVC 108



 Score = 58.5 bits (140), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 78/331 (23%), Positives = 143/331 (43%), Gaps = 68/331 (20%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDF-- 61
           K  V W+++LAG+A Q G+ + A ++F ++ +  +       S IL    +V AA +   
Sbjct: 61  KDIVAWSAMLAGYA-QTGETEAAIKMFGELTKGGIKPNEFTFSSIL----NVCAATNASM 115

Query: 62  -----FQRLPIKDTASWNTMISG-----FVQKKNMAKARDLFLAMPEKNSVSWSAMISGY 111
                F    IK     +  +S      + +K N+  A ++F    EK+ VSW++MISGY
Sbjct: 116 GQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGY 175

Query: 112 IECGQLDKAVELFKVAPVKSV----VAWTAMISGYMKFGYVE------------------ 149
            + GQ  KA+++FK    + V    V +  + +     G VE                  
Sbjct: 176 AQHGQAMKALDVFKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPT 235

Query: 150 ---NSWAED----GLKLLRMMIGLGIRPNASSLS---SVLLGCSHLSSLQLGK-QVHQLV 198
              NS   D      +L + M  +   PN +  +   ++L  C      +LG+    +++
Sbjct: 236 KEHNSCMVDLYSRAGQLEKAMKVIENMPNPAGSTIWRTILAACRVHKKTELGRLAAEKII 295

Query: 199 FKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDV-----VTW-------NAMIS 246
              P  +D+ A   L +MY + GD ++  K+   +  ++V      +W        + ++
Sbjct: 296 AMKP--EDSAAYVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWIEVKNKTYSFLA 353

Query: 247 GYAQHG-KGEKALRLFD---KMKDEGMKPDS 273
           G   H  K +  ++L D   ++KD G +PD+
Sbjct: 354 GDRSHPLKDQIYMKLEDLSTRLKDLGYEPDT 384



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 64/271 (23%), Positives = 118/271 (43%), Gaps = 20/271 (7%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP---IKDTASWNTMI 77
           GK+++A ++F  I   D+V+++ ML+     + +  AA   F  L    IK      + I
Sbjct: 46  GKVEEAAKVFSGIDDKDIVAWSAMLAG-YAQTGETEAAIKMFGELTKGGIKPNEFTFSSI 104

Query: 78  SGFVQKKN--MAKARDLF-LAMPEKNSVSW---SAMISGYIECGQLDKAVELFKVAPVKS 131
                  N  M + +     A+  +   S    SA+++ Y + G ++ A E+FK    K 
Sbjct: 105 LNVCAATNASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKD 164

Query: 132 VVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLG 191
           +V+W +MISGY + G      A   L + + M    ++ +  +   V   C+H   ++ G
Sbjct: 165 LVSWNSMISGYAQHGQ-----AMKALDVFKEMKKRKVKMDGVTFIGVFAACTHAGLVEEG 219

Query: 192 KQVHQLVFKSPLCKDTTALTP-LISMYCKCGDLEDACKLFLEIQRKDVVT-WNAMISGYA 249
           ++   ++ +      T      ++ +Y + G LE A K+   +      T W  +++   
Sbjct: 220 EKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIENMPNPAGSTIWRTILAACR 279

Query: 250 QHGKGEKALRLFDKMKDEGMKP-DSITFVAL 279
            H K E      +K+    MKP DS  +V L
Sbjct: 280 VHKKTELGRLAAEKII--AMKPEDSAAYVLL 308


>gi|449462994|ref|XP_004149219.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
 gi|449500964|ref|XP_004161240.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 624

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 217/537 (40%), Positives = 320/537 (59%), Gaps = 19/537 (3%)

Query: 19  QRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRL-----PIKDTASW 73
           +RG L+DAQELFD + +    S+++++        +  + F  F+ L     P+ D ++ 
Sbjct: 97  ERGALEDAQELFDGMSKRHPYSWSVIVGG-YAKVGNFFSCFWMFRELLRSGAPLDDYSA- 154

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSW-----SAMISGYIECGQLDKAVELFKVAP 128
             +I      K++   R L   +  K  + +     + ++  Y  C  ++ A ++F    
Sbjct: 155 PVVIRACRDLKDLKCGR-LIHCITLKCGLDYGHFVCATLVDMYARCKVVEDAHQIFVKMW 213

Query: 129 VKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSL 188
            + +  WT MI    + G    S     L     M   GI P+  +L +V+  C+ L ++
Sbjct: 214 KRDLATWTVMIGALAESGVPVES-----LVFFDRMRNQGIVPDKVALVTVVYACAKLGAM 268

Query: 189 QLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGY 248
              K +H  +  +    D    T +I MY KCG +E A  +F  +Q ++V+TW+AMI+ Y
Sbjct: 269 NKAKAIHAYINGTGYSLDVILGTAMIDMYAKCGSVESARWIFDRMQVRNVITWSAMIAAY 328

Query: 249 AQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK 308
             HG+GEKAL LF  M   G+ P+ ITFV+LL AC+HAGL++ G ++F SM ++YG+   
Sbjct: 329 GYHGQGEKALELFPMMLRSGILPNRITFVSLLYACSHAGLIEEGQRFFSSMWDEYGVTPD 388

Query: 309 PDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLF 368
             HYTCMVDLLGRAG+L EA+++I+ MP +    ++G LL ACR+H+ LDLAE  A +L 
Sbjct: 389 VKHYTCMVDLLGRAGRLDEALEMIEGMPVEKDEVLWGALLGACRIHRHLDLAERVARSLL 448

Query: 369 NLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSG 428
            L  +   G YV L+NIYA   KW+D+A+ R  M +  + K+PG +WIEVG  +++F  G
Sbjct: 449 KLQ-SQKPGHYVLLSNIYANAGKWEDMAKTRDLMTKGGLRKIPGRTWIEVGEKLYQFGVG 507

Query: 429 DRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLI 488
           D+ HP    I++ LK L +++++AGY PD    L+ V EEVK+ LL  HSEKLAIAFGL+
Sbjct: 508 DKTHPRSNEIYKMLKRLGEKLEVAGYHPDTNDVLYDVDEEVKQGLLYSHSEKLAIAFGLL 567

Query: 489 KVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
            +P G PIR+ KNLRVCGDCH   K++S IE++ IIVRD  RFHHFK+G CSC DYW
Sbjct: 568 VLPQGHPIRITKNLRVCGDCHTFCKFVSLIEQKTIIVRDAKRFHHFKEGVCSCRDYW 624



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 59/229 (25%), Positives = 111/229 (48%), Gaps = 8/229 (3%)

Query: 111 YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFG-YVENSWAEDGLKLLRMMIGLGIR 169
           Y+E G L+ A ELF     +   +W+ ++ GY K G +    W      + R ++  G  
Sbjct: 95  YVERGALEDAQELFDGMSKRHPYSWSVIVGGYAKVGNFFSCFW------MFRELLRSGAP 148

Query: 170 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 229
            +  S   V+  C  L  L+ G+ +H +  K  L         L+ MY +C  +EDA ++
Sbjct: 149 LDDYSAPVVIRACRDLKDLKCGRLIHCITLKCGLDYGHFVCATLVDMYARCKVVEDAHQI 208

Query: 230 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLV 289
           F+++ ++D+ TW  MI   A+ G   ++L  FD+M+++G+ PD +  V ++ AC   G +
Sbjct: 209 FVKMWKRDLATWTVMIGALAESGVPVESLVFFDRMRNQGIVPDKVALVTVVYACAKLGAM 268

Query: 290 DLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 338
           +   +   + +N  G +      T M+D+  + G +  A  +  +M  +
Sbjct: 269 NKA-KAIHAYINGTGYSLDVILGTAMIDMYAKCGSVESARWIFDRMQVR 316



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 45/187 (24%), Positives = 81/187 (43%), Gaps = 19/187 (10%)

Query: 171 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 230
           +     S LL C +L  +   +QVH  +  +   ++      L+ MY + G LEDA +LF
Sbjct: 52  DTKRFRSSLLSCRNLFQV---RQVHAQIATNGAFRNLAVANKLLYMYVERGALEDAQELF 108

Query: 231 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVD 290
             + ++   +W+ ++ GYA+ G       +F ++   G   D  +   ++ AC    L D
Sbjct: 109 DGMSKRHPYSWSVIVGGYAKVGNFFSCFWMFRELLRSGAPLDDYSAPVVIRACR--DLKD 166

Query: 291 LGIQYFDSMVN-----DYGIAAKPDHYTC--MVDLLGRAGKLVEAVDLIKKMPFKPQPAI 343
           L        +      DYG      H+ C  +VD+  R   + +A  +  KM +K   A 
Sbjct: 167 LKCGRLIHCITLKCGLDYG------HFVCATLVDMYARCKVVEDAHQIFVKM-WKRDLAT 219

Query: 344 FGTLLSA 350
           +  ++ A
Sbjct: 220 WTVMIGA 226


>gi|356510389|ref|XP_003523921.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 818

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 233/622 (37%), Positives = 338/622 (54%), Gaps = 86/622 (13%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQ----PDVVSYNIMLSCI-------- 48
           M  K  V+W +++AG+A Q G  K A +L  ++ +    PD V+   +L  +        
Sbjct: 206 MQHKDLVSWTTLVAGYA-QNGHAKRALQLVLQMQEAGQKPDSVTLVSILPAVADMKALRI 264

Query: 49  ---------------LLNSDDVVAAFDF-----------FQRLPIKDTASWNTMISGFVQ 82
                          L+N  + +    F           F+ +  K   SWNTMI G  Q
Sbjct: 265 GRSIHGYAFRSGFESLVNVTNALLDMYFKCGSARIARLVFKGMRSKTVVSWNTMIDGCAQ 324

Query: 83  KKNMAKARDLFLAMPEKNSV---------------------SW----------------- 104
                +A   FL M ++  V                      W                 
Sbjct: 325 NGESEEAFATFLKMLDEGEVPTRVTMMGVLLACANLGDLERGWFVHKLLDKLKLDSNVSV 384

Query: 105 -SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMM 163
            +++IS Y +C ++D A  +F     K+ V W AMI      GY +N   ++ L L  MM
Sbjct: 385 MNSLISMYSKCKRVDIAASIFNNLE-KTNVTWNAMI-----LGYAQNGCVKEALNLFCMM 438

Query: 164 IGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDL 223
              GI+ +  +L  V+   +  S  +  K +H L  ++ +  +    T L+ MY KCG +
Sbjct: 439 QSQGIKLDCFTLVGVITALADFSVNRQAKWIHGLAVRACMDNNVFVSTALVDMYAKCGAI 498

Query: 224 EDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC 283
           + A KLF  +Q + V+TWNAMI GY  HG G++ L LF++M+   +KP+ ITF++++ AC
Sbjct: 499 KTARKLFDMMQERHVITWNAMIDGYGTHGVGKETLDLFNEMQKGAVKPNDITFLSVISAC 558

Query: 284 NHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAI 343
           +H+G V+ G+  F SM  DY +    DHY+ MVDLLGRAG+L +A + I++MP KP  ++
Sbjct: 559 SHSGFVEEGLLLFKSMQEDYYLEPTMDHYSAMVDLLGRAGQLDDAWNFIQEMPIKPGISV 618

Query: 344 FGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMK 403
            G +L AC++HK ++L E AA  LF L+P +  G +V LANIYA+   WD VA++R +M+
Sbjct: 619 LGAMLGACKIHKNVELGEKAAQKLFKLDP-DEGGYHVLLANIYASNSMWDKVAKVRTAME 677

Query: 404 ENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALH 463
           +  + K PG SW+E+   +H F SG   HPE   I+  L+ L   +K AGYVPD + ++H
Sbjct: 678 DKGLHKTPGCSWVELRNEIHTFYSGSTNHPESKKIYAFLETLGDEIKAAGYVPDPD-SIH 736

Query: 464 AVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREI 523
            V E+VK+QLL  HSE+LAIAFGL+    GT + + KNLRVCGDCH  TKYIS +  REI
Sbjct: 737 DVEEDVKKQLLSSHSERLAIAFGLLNTSPGTTLHIRKNLRVCGDCHDTTKYISLVTGREI 796

Query: 524 IVRDTTRFHHFKDGTCSCGDYW 545
           IVRD  RFHHFK+G+CSCGDYW
Sbjct: 797 IVRDLRRFHHFKNGSCSCGDYW 818



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 82/280 (29%), Positives = 143/280 (51%), Gaps = 14/280 (5%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDT----ASWNTM 76
           G   +A  +F+ +     V Y+IML     NS  +  A  FF R+   +       +  +
Sbjct: 93  GSNSEAARVFEHVELKLDVLYHIMLKGYAKNSS-LGDALCFFLRMMCDEVRLVVGDYACL 151

Query: 77  ISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSV 132
           +    +  ++ K R++   +     E N    +A++S Y +C Q+D A ++F+    K +
Sbjct: 152 LQLCGENLDLKKGREIHGLIITNGFESNLFVMTAVMSLYAKCRQIDNAYKMFERMQHKDL 211

Query: 133 VAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGK 192
           V+WT +++GY      +N  A+  L+L+  M   G +P++ +L S+L   + + +L++G+
Sbjct: 212 VSWTTLVAGY-----AQNGHAKRALQLVLQMQEAGQKPDSVTLVSILPAVADMKALRIGR 266

Query: 193 QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHG 252
            +H   F+S           L+ MY KCG    A  +F  ++ K VV+WN MI G AQ+G
Sbjct: 267 SIHGYAFRSGFESLVNVTNALLDMYFKCGSARIARLVFKGMRSKTVVSWNTMIDGCAQNG 326

Query: 253 KGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 292
           + E+A   F KM DEG  P  +T + +LLAC + G ++ G
Sbjct: 327 ESEEAFATFLKMLDEGEVPTRVTMMGVLLACANLGDLERG 366


>gi|414866530|tpg|DAA45087.1| TPA: hypothetical protein ZEAMMB73_840863 [Zea mays]
          Length = 851

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 215/535 (40%), Positives = 314/535 (58%), Gaps = 34/535 (6%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLS--CILLNSDDVVAA 58
           M  +  +++  +L GF    G++ +A++LFD++P  DVV++  MLS  C +   D+    
Sbjct: 138 MPERNHISYTVLLGGFLDA-GRVDEARKLFDEMPAKDVVAWTAMLSGYCQVGRVDEARTL 196

Query: 59  FDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLD 118
           FD    +P ++  SW  M+SG+ Q   +  AR LF  MPE+N VSW+AM+ GYI+ G+++
Sbjct: 197 FD---EMPKRNVVSWTAMVSGYAQNGQVNLARKLFEVMPERNEVSWTAMLFGYIQAGRIE 253

Query: 119 KAVELFKVAPVKSVVAWTAMISGYMKFG--------------------------YVENSW 152
            A ELF   P   + A   MI G+ + G                          Y +N +
Sbjct: 254 DAEELFNAMPDHPLAACNGMIVGFGQQGMVDAAKSVFDRMCERDDGTWSAIIKAYEQNEF 313

Query: 153 AEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTP 212
             + L   R M+ +GIRPN  S+ S+L  C+ L+ L  G++VH  + +     D  A++ 
Sbjct: 314 LMEALSTFREMLHIGIRPNYPSVISILTVCAALAVLDYGREVHGAMLRRSFDMDIYAVSA 373

Query: 213 LISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPD 272
           LI+MY KCG+L+ A ++F   + KDVV WN+MI+GYAQHG GE+AL +FD M+  GM PD
Sbjct: 374 LITMYIKCGNLDKAKRVFHMFEPKDVVMWNSMITGYAQHGLGEEALHIFDDMRLAGMVPD 433

Query: 273 SITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLI 332
            IT++  L AC++ G V  G   F+SM    GI    +HY CMVDLLGRAG + EA+ LI
Sbjct: 434 GITYIGALTACSYTGKVKEGRDIFNSMRTKSGIKPGLEHYACMVDLLGRAGLVDEALYLI 493

Query: 333 KKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKW 392
           K MP +P   I+G L+ ACR+HK  ++AE +A  L  L P N AG YV L++IY +  +W
Sbjct: 494 KTMPVEPDAVIWGALMGACRMHKNAEIAEISAKKLLELEPGN-AGPYVLLSHIYTSSGRW 552

Query: 393 DDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRV-HPELVSIHEKLKELEKRMKL 451
           +D + +R  +   ++ K  G SWIE    VH F+SGD + H E  SI + L++L+  +  
Sbjct: 553 EDASNMRKFISSRHLNKSLGCSWIEYDKRVHLFKSGDVLAHQEHASILKMLEKLDGLLME 612

Query: 452 AGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCG 506
           +GY  D  F LH + +E K   L +HSE+ A+A+GL+K+P   PIRV KNLRVCG
Sbjct: 613 SGYSADGSFVLHDIDDEQKTHSLRYHSERQAVAYGLLKIPEELPIRVMKNLRVCG 667



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 87/323 (26%), Positives = 171/323 (52%), Gaps = 29/323 (8%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQ-ELFDKIPQPDVVSYNIMLSCILLNSDDVVAAF 59
           M ++TT ++N++LAG+   R  L DA   +F ++P  D+ SYN ++S + L    +  A 
Sbjct: 43  MPLRTTASYNALLAGYF--RNHLPDAALRVFHRMPTRDLASYNALISGLSLRRHTLPDAA 100

Query: 60  DFFQRLPIKDT-ASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLD 118
                +P   +  S+ +++ G+V+   +A A  LF  MPE+N +S++ ++ G+++ G++D
Sbjct: 101 AALATIPYPPSVVSFTSLLRGYVRHGLLADAIQLFRQMPERNHISYTVLLGGFLDAGRVD 160

Query: 119 KAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSV 178
           +A +LF   P K VVAWTAM+SGY + G V+ +         R +     + N  S +++
Sbjct: 161 EARKLFDEMPAKDVVAWTAMLSGYCQVGRVDEA---------RTLFDEMPKRNVVSWTAM 211

Query: 179 LLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDV 238
           + G +    + L +++ +++ +    ++  + T ++  Y + G +EDA +LF  +    +
Sbjct: 212 VSGYAQNGQVNLARKLFEVMPE----RNEVSWTAMLFGYIQAGRIEDAEELFNAMPDHPL 267

Query: 239 VTWNAMISGYAQHGKGEKALRLFDKM--KDEGMKPDSITFVALLLACNHAGLVDLGIQYF 296
              N MI G+ Q G  + A  +FD+M  +D+G      T+ A++ A      +   +  F
Sbjct: 268 AACNGMIVGFGQQGMVDAAKSVFDRMCERDDG------TWSAIIKAYEQNEFLMEALSTF 321

Query: 297 DSMVNDYGIAAKPDHYTCMVDLL 319
             M++   I  +P+ Y  ++ +L
Sbjct: 322 REMLH---IGIRPN-YPSVISIL 340



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 83/281 (29%), Positives = 150/281 (53%), Gaps = 35/281 (12%)

Query: 36  PDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLA 95
           P VV  N  ++  L  + ++  A   F+ +P++ TAS+N +++G+ +      A  +F  
Sbjct: 15  PAVVDANARIAR-LARTGNMEGARATFEAMPLRTTASYNALLAGYFRNHLPDAALRVFHR 73

Query: 96  MPEKNSVSWSAMISGY-IECGQL-DKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWA 153
           MP ++  S++A+ISG  +    L D A  L  +    SVV++T+++ GY++ G +     
Sbjct: 74  MPTRDLASYNALISGLSLRRHTLPDAAAALATIPYPPSVVSFTSLLRGYVRHGLL----- 128

Query: 154 EDGLKLLRMMIGLGIRPNASSLS-SVLLGCSHLSSLQLGK--QVHQLVFKSPLCKDTTAL 210
            D ++L R M      P  + +S +VLLG      L  G+  +  +L  + P  KD  A 
Sbjct: 129 ADAIQLFRQM------PERNHISYTVLLG----GFLDAGRVDEARKLFDEMP-AKDVVAW 177

Query: 211 TPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMK 270
           T ++S YC+ G +++A  LF E+ +++VV+W AM+SGYAQ+G+   A +LF+ M +    
Sbjct: 178 TAMLSGYCQVGRVDEARTLFDEMPKRNVVSWTAMVSGYAQNGQVNLARKLFEVMPER--- 234

Query: 271 PDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDH 311
            + +++ A+L     AG ++   + F++M         PDH
Sbjct: 235 -NEVSWTAMLFGYIQAGRIEDAEELFNAM---------PDH 265


>gi|359495457|ref|XP_003634994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Vitis vinifera]
          Length = 993

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 229/617 (37%), Positives = 335/617 (54%), Gaps = 84/617 (13%)

Query: 6   TVNWNSVLAGFAKQRGKLKDA----QELFDKIPQPDVVSYNIMLSCIL------------ 49
           T++WNS+L+GF  Q G   +A     E+ D   +PD+V+   +++               
Sbjct: 384 TISWNSMLSGFV-QNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLNGMQIH 442

Query: 50  -------LNSD--------DVVAAFD-------FFQRLPIKDTASWNTMISGFVQKKNMA 87
                  L+SD        D+ A F         F ++P KD  SW T+I+G  Q  + +
Sbjct: 443 AYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHS 502

Query: 88  KARDLF-------------------LAMPEKNSVSWSAMISGYI---------------- 112
           +A +LF                   LA      +S    I  YI                
Sbjct: 503 RALELFREVQLEGIDLDVMMISSILLACSGLKLISSVKEIHSYIIRKGLSDLVLQNGIVD 562

Query: 113 ---ECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIR 169
              ECG +D A  +F++   K VV+WT+MIS Y     V N  A + L+L  +M   G+ 
Sbjct: 563 VYGECGNVDYAARMFELIEFKDVVSWTSMISCY-----VHNGLANEALELFHLMKETGVE 617

Query: 170 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 229
           P++ SL S+L   + LS+L+ GK++H  + +     + +  + L+ MY +CG LE +  +
Sbjct: 618 PDSISLVSILSAAASLSALKKGKEIHGFLIRKGFVLEGSLASTLVDMYARCGTLEKSRNV 677

Query: 230 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLV 289
           F  I+ KD+V W +MI+ Y  HG G  A+ LF +M+DE + PD I FVA+L AC+H+GL+
Sbjct: 678 FNFIRNKDLVLWTSMINAYGMHGCGRAAIDLFRRMEDESIAPDHIAFVAVLYACSHSGLM 737

Query: 290 DLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLS 349
           + G ++ +SM  +Y +   P+HY C+VDLLGRA  L EA   +K M  +P   ++  LL 
Sbjct: 738 NEGRRFLESMKYEYQLEPWPEHYVCLVDLLGRANHLEEAYQFVKGMEVEPTAEVWCALLG 797

Query: 350 ACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVK 409
           AC++H   +L E AA  L  ++P N  G YV ++N+YAA ++W DV  +R+ MK + + K
Sbjct: 798 ACQIHSNKELGEIAAQKLLEMDPEN-PGNYVLVSNVYAAERRWKDVEEVRMRMKASGLKK 856

Query: 410 MPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKEL-EKRMKLAGYVPDLEFALHAVGEE 468
            PG SWIEVG  VH F + D+ HP+   I+ KL ++ EK  K  GYV   +F LH   EE
Sbjct: 857 NPGCSWIEVGNKVHTFMARDKSHPQSYEIYSKLSQITEKLAKEGGYVAQTKFVLHNAKEE 916

Query: 469 VKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDT 528
            K Q+L  HSE+LAIA+G++  P G  +R+ KNLRVCGDCH   K IS   +RE+++RD 
Sbjct: 917 EKVQMLYGHSERLAIAYGMLTTPEGASLRITKNLRVCGDCHNFCKLISKFFERELVMRDA 976

Query: 529 TRFHHFKDGTCSCGDYW 545
            RFHHFK G CSCGD W
Sbjct: 977 NRFHHFKGGVCSCGDVW 993



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 79/265 (29%), Positives = 128/265 (48%), Gaps = 24/265 (9%)

Query: 83  KKNMAKARDLFLAMPEKNSVSWSAMISG-----YIECGQLDKAVELFKVAPVKSVVAWTA 137
           KK +++ + +   M   N++  S  +S      Y +CG L  A +LF   P K++  W A
Sbjct: 127 KKALSEGQQVHAHMITSNALFNSVFLSTRLVFMYGKCGCLVDAEKLFDGMPHKTIFTWNA 186

Query: 138 MISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQL 197
           MI       YV N      L+L R M   GI  +A +   +L  C  L   + G +VH L
Sbjct: 187 MIG-----AYVTNGEPLGSLELYREMRVSGIPLDACTFPCILKACGLLKDRRCGAEVHGL 241

Query: 198 VFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI-QRKDVVTWNAMISGYAQHGKGEK 256
             K            ++ MY KC DL  A +LF  + +++DVV+WN+MIS Y+ +G+  +
Sbjct: 242 AIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSSNGQSIE 301

Query: 257 ALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY---- 312
           ALRLF +M+   + P++ TFVA L AC  +  +  G+    +++       K  +Y    
Sbjct: 302 ALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIHATVL-------KSSYYINVF 354

Query: 313 --TCMVDLLGRAGKLVEAVDLIKKM 335
               ++ +  R GK+ EA ++   M
Sbjct: 355 VANALIAMYARFGKMGEAANIFYNM 379



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 71/283 (25%), Positives = 139/283 (49%), Gaps = 15/283 (5%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK----DTASWNTM 76
           G L DA++LFD +P   + ++N M+   + N + +  + + ++ + +     D  ++  +
Sbjct: 164 GCLVDAEKLFDGMPHKTIFTWNAMIGAYVTNGEPL-GSLELYREMRVSGIPLDACTFPCI 222

Query: 77  ISGFVQKKNMAKARDLFLAMPEKNSVSW----SAMISGYIECGQLDKAVELFKVAPVKS- 131
           +      K+     ++     ++  VS     ++++  Y +C  L+ A +LF   P K  
Sbjct: 223 LKACGLLKDRRCGAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKED 282

Query: 132 VVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLG 191
           VV+W +MIS Y       N  + + L+L   M    + PN  +  + L  C   S ++ G
Sbjct: 283 VVSWNSMISAYSS-----NGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQG 337

Query: 192 KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQH 251
             +H  V KS    +      LI+MY + G + +A  +F  +   D ++WN+M+SG+ Q+
Sbjct: 338 MFIHATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQN 397

Query: 252 GKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ 294
           G   +AL+ + +M+D G KPD +  ++++ A   +G    G+Q
Sbjct: 398 GLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLNGMQ 440



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 93/370 (25%), Positives = 173/370 (46%), Gaps = 23/370 (6%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQ-PDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK 68
           NS++  + K    L  A++LFD++P+  DVVS+N M+S    N   + A   F +     
Sbjct: 255 NSIVGMYTKCN-DLNGARQLFDRMPEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQKAS 313

Query: 69  DTASWNTMI--------SGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
              +  T +        S F+ K+ M     +  +    N    +A+I+ Y   G++ +A
Sbjct: 314 LAPNTYTFVAALQACEDSSFI-KQGMFIHATVLKSSYYINVFVANALIAMYARFGKMGEA 372

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLL 180
             +F        ++W +M+SG+     V+N    + L+    M   G +P+  ++ S++ 
Sbjct: 373 ANIFYNMDDWDTISWNSMLSGF-----VQNGLYHEALQFYHEMRDAGQKPDLVAVISIIA 427

Query: 181 GCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVT 240
             +   +   G Q+H    K+ L  D      L+ MY K   ++    +F ++  KDVV+
Sbjct: 428 ASARSGNTLNGMQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVS 487

Query: 241 WNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV 300
           W  +I+G+AQ+G   +AL LF +++ EG+  D +   ++LLAC+   L+   ++   S +
Sbjct: 488 WTTIIAGHAQNGSHSRALELFREVQLEGIDLDVMMISSILLACSGLKLIS-SVKEIHSYI 546

Query: 301 NDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLA 360
              G++        +VD+ G  G +  A  + + + FK    +  T + +C VH  L   
Sbjct: 547 IRKGLSDLVLQ-NGIVDVYGECGNVDYAARMFELIEFK--DVVSWTSMISCYVHNGL--- 600

Query: 361 EFAAMNLFNL 370
              A+ LF+L
Sbjct: 601 ANEALELFHL 610



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/184 (30%), Positives = 87/184 (47%), Gaps = 14/184 (7%)

Query: 174 SLSSVLLGCSHLSSLQLGKQVH-QLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLE 232
           + SSVL  C    +L  G+QVH  ++  + L       T L+ MY KCG L DA KLF  
Sbjct: 116 AYSSVLELCGSKKALSEGQQVHAHMITSNALFNSVFLSTRLVFMYGKCGCLVDAEKLFDG 175

Query: 233 IQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 292
           +  K + TWNAMI  Y  +G+   +L L+ +M+  G+  D+ TF  +L AC        G
Sbjct: 176 MPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILKACGLLKDRRCG 235

Query: 293 IQYFDSMVNDYGIAAKPDHYT------CMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGT 346
            +        +G+A K  + +       +V +  +   L  A  L  +MP K     + +
Sbjct: 236 AEV-------HGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNS 288

Query: 347 LLSA 350
           ++SA
Sbjct: 289 MISA 292


>gi|297798624|ref|XP_002867196.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313032|gb|EFH43455.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 997

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 208/516 (40%), Positives = 297/516 (57%), Gaps = 45/516 (8%)

Query: 69  DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVS------------------------- 103
           D  +WN M+SG+ Q  +  K  +LF  M ++   S                         
Sbjct: 488 DLVAWNAMMSGYTQSHDGHKTLELFALMHKQGERSDDFTLATVLKTCGFLFAINQGKQVH 547

Query: 104 ------------W--SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVE 149
                       W  S ++  Y++CG +  A   F   PV   VAWT +ISG      +E
Sbjct: 548 AYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTLISGC-----IE 602

Query: 150 NSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTA 209
           N   E  L +   M  +G+ P+  +++++    S L++L+ G+Q+H    K     D   
Sbjct: 603 NGEEERALHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCTSDPFV 662

Query: 210 LTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGM 269
            T L+ MY KCG ++DA  LF  I+  ++  WNAM+ G AQHG+G++AL+LF +M+  G+
Sbjct: 663 GTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGKEALQLFKQMESLGI 722

Query: 270 KPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAV 329
           KPD +TF+ +L AC+H+GLV    +Y  SM  DYGI  + +HY+C+ D LGRAG + EA 
Sbjct: 723 KPDKVTFIGVLSACSHSGLVSEAYKYIRSMHRDYGIKPEIEHYSCLADALGRAGLVKEAE 782

Query: 330 DLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAM 389
           +LI  M  +   +++ TLL+ACRV    +  +  A  L  L P +++  YV L+N+YAA 
Sbjct: 783 NLIDSMSMEASASMYRTLLAACRVQGDTETGKRVATKLLELEPLDSSA-YVLLSNMYAAA 841

Query: 390 KKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRM 449
            KWD++   R  MK + V K PG+SWIEV   +H F   DR +P+   I++K+K++ + +
Sbjct: 842 SKWDEMKLARTMMKGHKVKKDPGFSWIEVKNKIHLFVVDDRSNPQTELIYKKVKDMIRDI 901

Query: 450 KLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCH 509
           K  GYVP+ +F L  V EE KE+ L +HSEKLA+AFGL+  P  TPIRV KNLRVCGDCH
Sbjct: 902 KQEGYVPETDFTLVDVEEEEKERALYYHSEKLAVAFGLLSTPPSTPIRVIKNLRVCGDCH 961

Query: 510 RATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
            A KYIS +  REI++RD  RFH FKDG CSCGDYW
Sbjct: 962 NAMKYISKVYDREIVLRDANRFHRFKDGICSCGDYW 997



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 93/337 (27%), Positives = 161/337 (47%), Gaps = 22/337 (6%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
           NS++  + K R K+  A+ +F+ + + D++S+N +++ I  +  +V A   F Q L    
Sbjct: 361 NSLINMYCKLR-KIGLARTVFNNMSERDLISWNSVIAGIAQSDLEVEAVCLFMQLLRCGL 419

Query: 70  TASWNTMISGFVQKKNMAK----ARDLFLAMPEKNSVSWS----AMISGYIECGQLDKAV 121
                TM S      ++ +    ++ + +   + N+V+ S    A+I  Y     + +A 
Sbjct: 420 KPDHYTMTSVLKAASSLPEGLSLSKQIHVHAIKTNNVADSFVSTALIDAYSRNRCMKEAE 479

Query: 122 ELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDG---LKLLRMMIGLGIRPNASSLSSV 178
            LF       +VAW AM+SGY +        + DG   L+L  +M   G R +  +L++V
Sbjct: 480 VLFGRNNF-DLVAWNAMMSGYTQ--------SHDGHKTLELFALMHKQGERSDDFTLATV 530

Query: 179 LLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDV 238
           L  C  L ++  GKQVH    KS    D    + ++ MY KCGD+  A   F  I   D 
Sbjct: 531 LKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDD 590

Query: 239 VTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDS 298
           V W  +ISG  ++G+ E+AL +F +M+  G+ PD  T   L  A +    ++ G Q   +
Sbjct: 591 VAWTTLISGCIENGEEERALHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHAN 650

Query: 299 MVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335
            +      + P   T +VD+  + G + +A  L K++
Sbjct: 651 ALK-LNCTSDPFVGTSLVDMYAKCGSIDDAYCLFKRI 686



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 86/333 (25%), Positives = 145/333 (43%), Gaps = 54/333 (16%)

Query: 1   MNVKTTVNWNSVLAGFAKQ-RGKLKDAQE---LFDKIPQPDVVSYNIMLSCIL------- 49
           M  +  V+WNS+LA +A+   G +++ +E   LF  + Q  V +  + LS +L       
Sbjct: 107 MPERDLVSWNSILAAYAQSSEGVVENVKEAFLLFRILRQDVVYTSRMTLSPMLKLCLHSG 166

Query: 50  ----------------LNSDDVVAA------FDF---------FQRLPIKDTASWNTMIS 78
                           L+ DD VA         F         F+ +P +D   WN M+ 
Sbjct: 167 YVCASESFHGYACKIGLDGDDFVAGALVNIYLKFGKVKEGRVLFEEMPYRDVVLWNLMLK 226

Query: 79  GFVQKKNMAKARDLFLAM------PEKNSVSWSAMISGY-IECGQLDKAVELFKVAPVKS 131
            +++     +A DL  A       P + ++   + ISG   E GQ+         + V  
Sbjct: 227 AYLEMGFKEEAIDLSSAFHTSGLHPNEITLRLLSRISGDDSEAGQVKSFENGNDASAVSE 286

Query: 132 VVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLG 191
           +++   ++SGY+  G          LK    M+   +  +  +   VL     L SL LG
Sbjct: 287 IISRNKILSGYLHAGQYSAL-----LKCFMDMVESDLECDQVTFILVLATAVRLDSLALG 341

Query: 192 KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQH 251
           +QVH +  K  L    T    LI+MYCK   +  A  +F  +  +D+++WN++I+G AQ 
Sbjct: 342 QQVHCMALKLGLDLMLTVSNSLINMYCKLRKIGLARTVFNNMSERDLISWNSVIAGIAQS 401

Query: 252 GKGEKALRLFDKMKDEGMKPDSITFVALLLACN 284
               +A+ LF ++   G+KPD  T  ++L A +
Sbjct: 402 DLEVEAVCLFMQLLRCGLKPDHYTMTSVLKAAS 434



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 89/182 (48%), Gaps = 6/182 (3%)

Query: 97  PEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKF--GYVENSWAE 154
           PE+  V+   +IS Y +CG L  A  +F   P + +V+W ++++ Y +   G VEN   +
Sbjct: 79  PERFLVN--NLISMYSKCGSLTYARRVFDKMPERDLVSWNSILAAYAQSSEGVVEN--VK 134

Query: 155 DGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLI 214
           +   L R++    +  +  +LS +L  C H   +   +  H    K  L  D      L+
Sbjct: 135 EAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVCASESFHGYACKIGLDGDDFVAGALV 194

Query: 215 SMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSI 274
           ++Y K G +++   LF E+  +DVV WN M+  Y + G  E+A+ L       G+ P+ I
Sbjct: 195 NIYLKFGKVKEGRVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAFHTSGLHPNEI 254

Query: 275 TF 276
           T 
Sbjct: 255 TL 256



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 81/171 (47%), Gaps = 12/171 (7%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQ-RL--PIKDTASWNTMI 77
           G +  AQ  FD IP PD V++  ++S  + N ++  A   F Q RL   + D  +  T+ 
Sbjct: 573 GDMSAAQFAFDSIPVPDDVAWTTLISGCIENGEEERALHVFSQMRLMGVLPDEFTIATLA 632

Query: 78  SGFVQKKNMAKARDLFLAMPEKNSVS----WSAMISGYIECGQLDKAVELFKVAPVKSVV 133
                   + + R +     + N  S     ++++  Y +CG +D A  LFK   + ++ 
Sbjct: 633 KASSCLTALEQGRQIHANALKLNCTSDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNIT 692

Query: 134 AWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSH 184
           AW AM+ G  + G       ++ L+L + M  LGI+P+  +   VL  CSH
Sbjct: 693 AWNAMLVGLAQHGE-----GKEALQLFKQMESLGIKPDKVTFIGVLSACSH 738



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 78/158 (49%), Gaps = 6/158 (3%)

Query: 186 SSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMI 245
           S L LGK  H  +       +   +  LISMY KCG L  A ++F ++  +D+V+WN+++
Sbjct: 60  SDLMLGKCTHARILALEENPERFLVNNLISMYSKCGSLTYARRVFDKMPERDLVSWNSIL 119

Query: 246 SGYAQHGKG-----EKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV 300
           + YAQ  +G     ++A  LF  ++ + +    +T   +L  C H+G V    + F    
Sbjct: 120 AAYAQSSEGVVENVKEAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYV-CASESFHGYA 178

Query: 301 NDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 338
              G+         +V++  + GK+ E   L ++MP++
Sbjct: 179 CKIGLDGDDFVAGALVNIYLKFGKVKEGRVLFEEMPYR 216



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 67/299 (22%), Positives = 125/299 (41%), Gaps = 54/299 (18%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVA----AFDFFQRL 65
           N++++ ++K  G L  A+ +FDK+P+ D+VS+N +L+    +S+ VV     AF  F R+
Sbjct: 85  NNLISMYSKC-GSLTYARRVFDKMPERDLVSWNSILAAYAQSSEGVVENVKEAFLLF-RI 142

Query: 66  PIKDTASWNTMI----------SGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECG 115
             +D    + M           SG+V            + +   + V+  A+++ Y++ G
Sbjct: 143 LRQDVVYTSRMTLSPMLKLCLHSGYVCASESFHGYACKIGLDGDDFVA-GALVNIYLKFG 201

Query: 116 QLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSL 175
           ++ +   LF+  P + VV W  M+  Y++ G+      E+ + L       G+ PN  +L
Sbjct: 202 KVKEGRVLFEEMPYRDVVLWNLMLKAYLEMGF-----KEEAIDLSSAFHTSGLHPNEITL 256

Query: 176 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR 235
                    LS +         V       D +A++ +IS                    
Sbjct: 257 RL-------LSRISGDDSEAGQVKSFENGNDASAVSEIISR------------------- 290

Query: 236 KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ 294
                 N ++SGY   G+    L+ F  M +  ++ D +TF+ +L        + LG Q
Sbjct: 291 ------NKILSGYLHAGQYSALLKCFMDMVESDLECDQVTFILVLATAVRLDSLALGQQ 343


>gi|356567218|ref|XP_003551818.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Glycine max]
          Length = 727

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 222/542 (40%), Positives = 314/542 (57%), Gaps = 32/542 (5%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQ 63
           +T V+W S+++G+A Q GK  +A  +F ++    V    I L  IL    DV        
Sbjct: 218 RTIVSWTSIISGYA-QNGKAVEALRMFSQMRNNGVKPDWIALVSILRAYTDV-------- 268

Query: 64  RLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVEL 123
                D       I GFV K  +     L +++            + Y +CG +  A   
Sbjct: 269 -----DDLEQGRSIHGFVIKMGLEDEPALLISLT-----------AFYAKCGLVTVAKSF 312

Query: 124 FKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCS 183
           F      +V+ W AMISGY K G+     AE+ + L   MI   I+P++ ++ S +L  +
Sbjct: 313 FDQMKTTNVIMWNAMISGYAKNGH-----AEEAVNLFHYMISRNIKPDSVTVRSAVLASA 367

Query: 184 HLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNA 243
            + SL+L + +   V KS    D    T LI MY KCG +E A ++F     KDVV W+A
Sbjct: 368 QVGSLELAQWMDDYVSKSNYGSDIFVNTSLIDMYAKCGSVEFARRVFDRNSDKDVVMWSA 427

Query: 244 MISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDY 303
           MI GY  HG+G +A+ L+  MK  G+ P+ +TF+ LL ACNH+GLV  G + F  M  D+
Sbjct: 428 MIMGYGLHGQGWEAINLYHVMKQAGVFPNDVTFIGLLTACNHSGLVKEGWELFHCM-KDF 486

Query: 304 GIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFA 363
            I  + +HY+C+VDLLGRAG L EA   I K+P +P  +++G LLSAC++++ + L E+A
Sbjct: 487 EIVPRNEHYSCVVDLLGRAGYLGEACAFIMKIPIEPGVSVWGALLSACKIYRCVTLGEYA 546

Query: 364 AMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVH 423
           A  LF+L+P N  G YVQL+N+YA+   WD VA +R+ M+E  + K  GYS IE+   + 
Sbjct: 547 ANKLFSLDPYNT-GHYVQLSNLYASSCLWDCVAHVRVLMREKGLNKDLGYSVIEINGKLQ 605

Query: 424 EFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAI 483
            F  GD+ HP    I ++L+ LE+R+K  G+VP  E  LH +  E KE+ L FHSE++A+
Sbjct: 606 AFHVGDKSHPMAKEIFDELQRLERRLKEVGFVPYTESVLHDLNYEEKEENLSFHSERIAV 665

Query: 484 AFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGD 543
           A+GLI    GT +R+ KNLR C +CH A K IS + +REIIVRD  RFHHFKDG CSCGD
Sbjct: 666 AYGLISTAPGTTLRITKNLRACVNCHSAIKLISKLVEREIIVRDANRFHHFKDGLCSCGD 725

Query: 544 YW 545
           YW
Sbjct: 726 YW 727



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 59/211 (27%), Positives = 108/211 (51%), Gaps = 6/211 (2%)

Query: 73  WNTMISGFVQKKNMAKARD-LFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKS 131
           + ++I     K+++ +  + L ++  + N    + +++G    GQ+  A +LF       
Sbjct: 59  YASLIDNSTHKRHLDQIHNRLVISGLQHNGFLMTKLVNGSSNLGQICYARKLFDEFCYPD 118

Query: 132 VVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLG 191
           V  W A+I  Y +     N+   D +++ R M   G+ P+  +   VL  C+ L    L 
Sbjct: 119 VFMWNAIIRSYSR-----NNMYRDTVEMYRWMRWTGVHPDGFTFPYVLKACTELLDFGLS 173

Query: 192 KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQH 251
             +H  + K     D      L+++Y KCG +  A  +F  +  + +V+W ++ISGYAQ+
Sbjct: 174 CIIHGQIIKYGFGSDVFVQNGLVALYAKCGHIGVAKVVFDGLYHRTIVSWTSIISGYAQN 233

Query: 252 GKGEKALRLFDKMKDEGMKPDSITFVALLLA 282
           GK  +ALR+F +M++ G+KPD I  V++L A
Sbjct: 234 GKAVEALRMFSQMRNNGVKPDWIALVSILRA 264



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 67/252 (26%), Positives = 120/252 (47%), Gaps = 37/252 (14%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVV 133
           N +++ + +  ++  A+ +F  +  +  VSW+++ISGY + G   KAVE           
Sbjct: 193 NGLVALYAKCGHIGVAKVVFDGLYHRTIVSWTSIISGYAQNG---KAVE----------- 238

Query: 134 AWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ 193
                                  L++   M   G++P+  +L S+L   + +  L+ G+ 
Sbjct: 239 ----------------------ALRMFSQMRNNGVKPDWIALVSILRAYTDVDDLEQGRS 276

Query: 194 VHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGK 253
           +H  V K  L  +   L  L + Y KCG +  A   F +++  +V+ WNAMISGYA++G 
Sbjct: 277 IHGFVIKMGLEDEPALLISLTAFYAKCGLVTVAKSFFDQMKTTNVIMWNAMISGYAKNGH 336

Query: 254 GEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYT 313
            E+A+ LF  M    +KPDS+T  + +LA    G ++L  Q+ D  V+     +     T
Sbjct: 337 AEEAVNLFHYMISRNIKPDSVTVRSAVLASAQVGSLELA-QWMDDYVSKSNYGSDIFVNT 395

Query: 314 CMVDLLGRAGKL 325
            ++D+  + G +
Sbjct: 396 SLIDMYAKCGSV 407



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 57/248 (22%), Positives = 109/248 (43%), Gaps = 31/248 (12%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M     + WN++++G+AK  G  ++A  LF  +     +S NI    + + S  + +A  
Sbjct: 316 MKTTNVIMWNAMISGYAKN-GHAEEAVNLFHYM-----ISRNIKPDSVTVRSAVLASA-- 367

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
              ++   + A W   +  +V K N     D+F+          +++I  Y +CG ++ A
Sbjct: 368 ---QVGSLELAQW---MDDYVSKSNYGS--DIFVN---------TSLIDMYAKCGSVEFA 410

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLL 180
             +F     K VV W+AMI GY   G     W  + + L  +M   G+ PN  +   +L 
Sbjct: 411 RRVFDRNSDKDVVMWSAMIMGYGLHG---QGW--EAINLYHVMKQAGVFPNDVTFIGLLT 465

Query: 181 GCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ-RKDVV 239
            C+H   ++ G ++   +    +       + ++ +  + G L +AC   ++I     V 
Sbjct: 466 ACNHSGLVKEGWELFHCMKDFEIVPRNEHYSCVVDLLGRAGYLGEACAFIMKIPIEPGVS 525

Query: 240 TWNAMISG 247
            W A++S 
Sbjct: 526 VWGALLSA 533



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 60/134 (44%), Gaps = 3/134 (2%)

Query: 193 QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHG 252
           Q+H  +  S L  +   +T L++     G +  A KLF E    DV  WNA+I  Y+++ 
Sbjct: 74  QIHNRLVISGLQHNGFLMTKLVNGSSNLGQICYARKLFDEFCYPDVFMWNAIIRSYSRNN 133

Query: 253 KGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ-YFDSMVNDYGIAAKPDH 311
                + ++  M+  G+ PD  TF  +L AC    L+D G+       +  YG  +    
Sbjct: 134 MYRDTVEMYRWMRWTGVHPDGFTFPYVLKACTE--LLDFGLSCIIHGQIIKYGFGSDVFV 191

Query: 312 YTCMVDLLGRAGKL 325
              +V L  + G +
Sbjct: 192 QNGLVALYAKCGHI 205


>gi|297740136|emb|CBI30318.3| unnamed protein product [Vitis vinifera]
          Length = 861

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 214/556 (38%), Positives = 316/556 (56%), Gaps = 33/556 (5%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRL----PIKDTASWNTM 76
           G ++ A+E+FD++ + +V+S++ M++    +      A D F+ +     + D  +  ++
Sbjct: 308 GCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGR-KALDLFRMMLSSGMLPDKITLASL 366

Query: 77  ISGFVQKKNMAKARDLFLAMPE----KNSVSWSAMISGYIECGQLDKAVELFKVAPVKSV 132
           +   +  +N+ + R +          +N +  + ++  Y     LD A  LF    V+  
Sbjct: 367 LYACINCRNLTQVRQVHAQASVHGMLQNLIVANKLVHFYSYYRALDDAYGLFDGMCVRDS 426

Query: 133 VAWTAMISGYMKFGYVENSW-----------------------AEDGLKLLRMMIGLGIR 169
           V+W+ M+ G+ K G   N +                       A + L L   M   G+ 
Sbjct: 427 VSWSVMVGGFAKVGDYMNCFGTFRELIRCGARPDNYTLPFCGNANESLVLFDKMREEGVV 486

Query: 170 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 229
           P+  ++ +V+  C+ L ++   + +   + +     D    T +I M+ KCG +E A ++
Sbjct: 487 PDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREI 546

Query: 230 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLV 289
           F  ++ K+V++W+AMI+ Y  HG+G KAL LF  M   G+ P+ IT V+LL AC+HAGLV
Sbjct: 547 FDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYACSHAGLV 606

Query: 290 DLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLS 349
           + G+++F  M  DY + A   HYTC+VDLLGRAG+L EA+ LI+ M  +    ++G  L 
Sbjct: 607 EEGLRFFSLMWEDYSVRADVKHYTCVVDLLGRAGRLDEALKLIESMTVEKDEGLWGAFLG 666

Query: 350 ACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVK 409
           ACR HK + LAE AA +L  L P N  G Y+ L+NIYA   +W+DVA+ R  M +  + K
Sbjct: 667 ACRTHKDVVLAEKAATSLLELQPQNP-GHYILLSNIYANAGRWEDVAKTRDLMSQRRLKK 725

Query: 410 MPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEV 469
           +PG++WIEV    H+F  GD  HP    I+E LK L  +++L GYVPD  F LH V EE+
Sbjct: 726 IPGWTWIEVDNKSHQFSVGDTTHPRSKEIYEMLKSLGNKLELVGYVPDTNFVLHDVDEEL 785

Query: 470 KEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTT 529
           K  +L  HSEKLAIAFGLI  P  TPIR+ KNLRVCGDCH   K +SAI  R IIVRD  
Sbjct: 786 KIGILYSHSEKLAIAFGLIATPEHTPIRIIKNLRVCGDCHTFCKLVSAITGRVIIVRDAN 845

Query: 530 RFHHFKDGTCSCGDYW 545
           RFHHFK+G CSCGDYW
Sbjct: 846 RFHHFKEGACSCGDYW 861



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 71/244 (29%), Positives = 121/244 (49%), Gaps = 23/244 (9%)

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFL------AMPEKNSVSWS------ 105
           A+  F  + ++D+ SW+ M+ GF +  +       F       A P+  ++ +       
Sbjct: 132 AYGLFDGMCVRDSVSWSVMVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRD 191

Query: 106 ------AMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKL 159
                 A++  Y++C +++ A  LF     + +V WT MI GY + G      A + L L
Sbjct: 192 LKNLQMALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGK-----ANESLVL 246

Query: 160 LRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCK 219
              M   G+ P+  ++ +V+  C+ L ++   + +   + +     D    T +I MY K
Sbjct: 247 FEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAK 306

Query: 220 CGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVAL 279
           CG +E A ++F  ++ K+V++W+AMI+ Y  HG+G KAL LF  M   GM PD IT  +L
Sbjct: 307 CGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASL 366

Query: 280 LLAC 283
           L AC
Sbjct: 367 LYAC 370



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 88/299 (29%), Positives = 138/299 (46%), Gaps = 47/299 (15%)

Query: 49  LLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPE----KNSVSW 104
           L N ++  + F F QRL  K        IS  V  +N+ + R +          +N V  
Sbjct: 63  LHNREEESSKFHFLQRLNPK------FYISALVNCRNLTQVRQVHAQASVHGMLENIVVA 116

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI 164
           + +I  Y     LD A  LF    V+  V+W+ M+ G+ K G   N +        R +I
Sbjct: 117 NKLIYFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYINCFGT-----FRELI 171

Query: 165 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 224
             G RP+  +L  V+  C  L +LQ+                      L+ MY KC ++E
Sbjct: 172 RCGARPDNYTLPFVIRACRDLKNLQMA---------------------LVDMYVKCREIE 210

Query: 225 DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 284
           DA  LF ++Q +D+VTW  MI GYA+ GK  ++L LF+KM++EG+ PD +  V ++ AC 
Sbjct: 211 DARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVFAC- 269

Query: 285 HAGLVDLGIQYFDSMVNDYGIAAKPDHY-----TCMVDLLGRAGKLVEAVDLIKKMPFK 338
                 LG  +   +++DY I  K         T M+D+  + G +  A ++  +M  K
Sbjct: 270 ----AKLGAMHKARIIDDY-IQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEK 323



 Score =  111 bits (278), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 93/362 (25%), Positives = 167/362 (46%), Gaps = 61/362 (16%)

Query: 22  KLKDAQELFDKIPQPDVVSYNIMLS----CILLNSDDVVAAFDFFQRLP----IKDTASW 73
           +++DA+ LFDK+ + D+V++ +M+     C   N   V+     F+++     + D  + 
Sbjct: 208 EIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVL-----FEKMREEGVVPDKVAM 262

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISGYIECGQLDKAVELFKVAPV 129
            T++    +   M KAR +   +  K    + +  +AMI  Y +CG ++ A E+F     
Sbjct: 263 VTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEE 322

Query: 130 KSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQ 189
           K+V++W+AMI+ Y   GY  +      L L RMM+  G+ P+  +L+S+L  C +  +L 
Sbjct: 323 KNVISWSAMIAAY---GY--HGQGRKALDLFRMMLSSGMLPDKITLASLLYACINCRNLT 377

Query: 190 LGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYA 249
             +QVH       + ++      L+  Y     L+DA  LF  +  +D V+W+ M+ G+A
Sbjct: 378 QVRQVHAQASVHGMLQNLIVANKLVHFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFA 437

Query: 250 Q----------------------------HGKGEKALRLFDKMKDEGMKPDSITFVALLL 281
           +                             G   ++L LFDKM++EG+ PD +  V ++ 
Sbjct: 438 KVGDYMNCFGTFRELIRCGARPDNYTLPFCGNANESLVLFDKMREEGVVPDKVAMVTVVF 497

Query: 282 ACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY-----TCMVDLLGRAGKLVEAVDLIKKMP 336
           AC       LG  +    ++DY I  K         T M+D+  + G +  A ++  +M 
Sbjct: 498 AC-----AKLGAMHKARTIDDY-IQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRME 551

Query: 337 FK 338
            K
Sbjct: 552 EK 553


>gi|297745420|emb|CBI40500.3| unnamed protein product [Vitis vinifera]
          Length = 1133

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 201/481 (41%), Positives = 292/481 (60%), Gaps = 10/481 (2%)

Query: 69   DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELF---- 124
            D     ++I  +V+  ++  A+ +F  M  +N  +W++++SGY   G  + A+ L     
Sbjct: 659  DVYVGTSLIDMYVKNHSLTSAQAVFDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQME 718

Query: 125  KVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSH 184
            K      +V W  MISGY  +G       ++ L     M   G+ PN++S++ +L  C+ 
Sbjct: 719  KEGIKPDLVTWNGMISGYAMWGC-----GKEALAFFAQMQQEGVMPNSASITCLLRACAS 773

Query: 185  LSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAM 244
            LS LQ GK++H L  ++   +D    T LI MY K   L++A K+F  IQ K + +WN M
Sbjct: 774  LSLLQKGKEIHCLSIRNGFIEDVFVATALIDMYSKSSSLKNAHKVFRRIQNKTLASWNCM 833

Query: 245  ISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYG 304
            I G+A  G G++A+ +F++M+  G+ PD+ITF ALL AC ++GL+  G +YFDSM+ DY 
Sbjct: 834  IMGFAIFGLGKEAISVFNEMQKVGVGPDAITFTALLSACKNSGLIGEGWKYFDSMITDYR 893

Query: 305  IAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAA 364
            I  + +HY CMVDLLGRAG L EA DLI  MP KP   I+G LL +CR+HK L  AE AA
Sbjct: 894  IVPRLEHYCCMVDLLGRAGYLDEAWDLIHTMPLKPDATIWGALLGSCRIHKNLKFAETAA 953

Query: 365  MNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHE 424
             NLF L P N+A  Y+ + N+Y+   +W+D+  +R  M    V     +SWI++   VH 
Sbjct: 954  KNLFKLEPNNSAN-YILMMNLYSIFNRWEDMDHLRELMGAAGVRNRQVWSWIQINQRVHV 1012

Query: 425  FRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIA 484
            F S ++ HP+   I+ +L +L   MK  GYVPD+      + E  K+++LL H+EKLAI 
Sbjct: 1013 FSSDEKPHPDAGKIYFELYQLVSEMKKLGYVPDVNCVYQNMDEVEKQKILLSHTEKLAIT 1072

Query: 485  FGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDY 544
            +GLIK+  G PIRV KN R+C DCH A KYIS ++ RE+ +RD  RFHHF++G CSC D+
Sbjct: 1073 YGLIKMKAGEPIRVIKNTRICSDCHSAAKYISLVKARELFLRDGVRFHHFREGKCSCNDF 1132

Query: 545  W 545
            W
Sbjct: 1133 W 1133



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 83/349 (23%), Positives = 146/349 (41%), Gaps = 52/349 (14%)

Query: 12  VLAGFAKQRGKLKDAQELFDKIPQ---PDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK 68
           V+ G  +Q   +K       K+PQ   PD  + N ++S  L   D   AA  F+  LP +
Sbjct: 428 VVEGTDEQEHGIKMMHAQMIKLPQKWNPDAAAKN-LISSYLGFGDFWSAAMVFYVGLP-R 485

Query: 69  DTASWNTMISGF------------------------------VQKKNMAKARDLFLAMP- 97
           +   WN+ +  F                              V  K   +  D++L M  
Sbjct: 486 NYLKWNSFVEEFKSSAGSLHIVLEVFKELHGKGVVFDSEVYSVALKTCTRVMDIWLGMEI 545

Query: 98  ---------EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYV 148
                    + +     A+++ Y  C  L+KA ++F   P    + W   I        +
Sbjct: 546 HGCLIKRGFDLDVYLRCALMNFYGRCWGLEKANQVFHEMPNPEALLWNEAI-----ILNL 600

Query: 149 ENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGC-SHLSSLQLGKQVHQLVFKSPLCKDT 207
           ++   + G++L R M    ++   +++  VL    S L  L +GK+ H  V ++    D 
Sbjct: 601 QSEKLQKGVELFRKMQFSFLKAETATIVRVLQASISELGFLNMGKETHGYVLRNGFDCDV 660

Query: 208 TALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE 267
              T LI MY K   L  A  +F  ++ +++  WN+++SGY+  G  E ALRL ++M+ E
Sbjct: 661 YVGTSLIDMYVKNHSLTSAQAVFDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKE 720

Query: 268 GMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMV 316
           G+KPD +T+  ++      G     + +F  M  + G+       TC++
Sbjct: 721 GIKPDLVTWNGMISGYAMWGCGKEALAFFAQMQQE-GVMPNSASITCLL 768



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 86/357 (24%), Positives = 155/357 (43%), Gaps = 38/357 (10%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQ 63
           +  + WNS +  F    G L    E+F ++    VV  + + S  L     V+   D + 
Sbjct: 485 RNYLKWNSFVEEFKSSAGSLHIVLEVFKELHGKGVVFDSEVYSVALKTCTRVM---DIWL 541

Query: 64  RLPIK----------DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE 113
            + I           D      +++ + +   + KA  +F  MP   ++ W+  I   ++
Sbjct: 542 GMEIHGCLIKRGFDLDVYLRCALMNFYGRCWGLEKANQVFHEMPNPEALLWNEAIILNLQ 601

Query: 114 CGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPN-- 171
             +L K VELF+      + A TA I   ++    E  +   G +    ++  G   +  
Sbjct: 602 SEKLQKGVELFRKMQFSFLKAETATIVRVLQASISELGFLNMGKETHGYVLRNGFDCDVY 661

Query: 172 -ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 230
             +SL  + +    L+S        Q VF +   ++  A   L+S Y   G  EDA +L 
Sbjct: 662 VGTSLIDMYVKNHSLTSA-------QAVFDNMKNRNIFAWNSLVSGYSFKGMFEDALRLL 714

Query: 231 LEIQRK----DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHA 286
            +++++    D+VTWN MISGYA  G G++AL  F +M+ EG+ P+S +   LL AC   
Sbjct: 715 NQMEKEGIKPDLVTWNGMISGYAMWGCGKEALAFFAQMQQEGVMPNSASITCLLRACASL 774

Query: 287 GLVDLG-----IQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 338
            L+  G     +   +  + D  +A      T ++D+  ++  L  A  + +++  K
Sbjct: 775 SLLQKGKEIHCLSIRNGFIEDVFVA------TALIDMYSKSSSLKNAHKVFRRIQNK 825



 Score = 42.7 bits (99), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 36/161 (22%), Positives = 68/161 (42%), Gaps = 20/161 (12%)

Query: 7   VNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP 66
           V WN +++G+A   G  K+A   F ++ Q  V+  +  ++C+L       A+    Q+  
Sbjct: 727 VTWNGMISGYA-MWGCGKEALAFFAQMQQEGVMPNSASITCLL----RACASLSLLQKGK 781

Query: 67  -----------IKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECG 115
                      I+D      +I  + +  ++  A  +F  +  K   SW+ MI G+   G
Sbjct: 782 EIHCLSIRNGFIEDVFVATALIDMYSKSSSLKNAHKVFRRIQNKTLASWNCMIMGFAIFG 841

Query: 116 QLDKAVELF----KVAPVKSVVAWTAMISGYMKFGYVENSW 152
              +A+ +F    KV      + +TA++S     G +   W
Sbjct: 842 LGKEAISVFNEMQKVGVGPDAITFTALLSACKNSGLIGEGW 882


>gi|52076596|dbj|BAD45498.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|218187337|gb|EEC69764.1| hypothetical protein OsI_00012 [Oryza sativa Indica Group]
          Length = 810

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 211/544 (38%), Positives = 324/544 (59%), Gaps = 15/544 (2%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLN--SDDVVAAFDFFQRLPI 67
           N+ L  F  +   L D + LFD++P+ D VSYN++++    N  +  V+  F   Q+L  
Sbjct: 274 NNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGF 333

Query: 68  -KDTASWNTMIS--GFVQKKNMAK---ARDLFLAMPEKNSVSWSAMISGYIECGQLDKAV 121
            +    + TM+S  G +   ++ K   A+ + L +  ++ +  +A+I  Y +CG LD A 
Sbjct: 334 DRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLG-NALIDMYSKCGMLDAAK 392

Query: 122 ELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLG 181
             F     KS ++WTA+I+GY     V+N   E+ L+L   M   G+RP+ ++ SS++  
Sbjct: 393 SNFSNRSEKSAISWTALITGY-----VQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKA 447

Query: 182 CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTW 241
            S L+ + LG+Q+H  + +S       + + L+ MY KCG L++A + F E+  ++ ++W
Sbjct: 448 SSSLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSISW 507

Query: 242 NAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN 301
           NA+IS YA +G+ + A+++F+ M   G  PDS+TF+++L AC+H GL D  ++YF  M +
Sbjct: 508 NAVISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAACSHNGLADECMKYFHLMKH 567

Query: 302 DYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAE 361
            Y I+   +HY C++D LGR G   +   ++ +MPFK  P I+ ++L +CR+H   +LA 
Sbjct: 568 QYSISPWKEHYACVIDTLGRVGCFSQVQKMLVEMPFKADPIIWTSILHSCRIHGNQELAR 627

Query: 362 FAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTV 421
            AA  LF + P +A   YV L+NIYA   +W+D A ++  M++  V K  GYSW+E+   
Sbjct: 628 VAADKLFGMEPTDATP-YVILSNIYARAGQWEDAACVKKIMRDRGVRKESGYSWVEIKQK 686

Query: 422 VHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKL 481
           ++ F S D   P +  I ++L  L K M   GY PD+  ALH V  E+K + L +HSE+L
Sbjct: 687 IYSFASNDLTSPMIDEIKDELDRLYKEMDKQGYKPDITCALHMVDHELKLESLKYHSERL 746

Query: 482 AIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSC 541
           AIAF L+  P GTPIR+ KNL  C DCH   K IS I  R+IIVRD+ RFHHFKDG CSC
Sbjct: 747 AIAFALMNTPAGTPIRIMKNLTACLDCHAVIKMISKIVNRDIIVRDSRRFHHFKDGVCSC 806

Query: 542 GDYW 545
           GDYW
Sbjct: 807 GDYW 810



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 66/217 (30%), Positives = 106/217 (48%), Gaps = 22/217 (10%)

Query: 70  TASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPV 129
           T   N  +   +   ++ +AR +F  MP KN  S + ++S Y   G L  A  LF  +P 
Sbjct: 43  TYRLNLGLRSLLSSGHLHRARAMFDQMPHKNIFSLNLILSAYSSSGDLPAAQHLFLSSPH 102

Query: 130 KSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVL--LGCS---- 183
           ++   WT M+  +   G        D L L R M+G G+ P+  ++++VL   GC+    
Sbjct: 103 RNATTWTIMMRAHAAAGRTS-----DALSLFRAMLGEGVIPDRVTVTTVLNLPGCTVPSL 157

Query: 184 HLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNA 243
           H  +++ G   H  V  +           L+  YCK G L  A ++FLE+  KD VT+NA
Sbjct: 158 HPFAIKFGLDTHVFVCNT-----------LLDAYCKHGLLAAARRVFLEMHDKDAVTYNA 206

Query: 244 MISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 280
           M+ G ++ G   +AL+LF  M+  G+     TF ++L
Sbjct: 207 MMMGCSKEGLHTQALQLFAAMRRAGIPATHFTFSSIL 243



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 85/339 (25%), Positives = 143/339 (42%), Gaps = 41/339 (12%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G L  A+ +FD++P  ++ S N++LS    +S D+ AA   F   P ++  +W  M+   
Sbjct: 57  GHLHRARAMFDQMPHKNIFSLNLILSA-YSSSGDLPAAQHLFLSSPHRNATTWTIMMRAH 115

Query: 81  VQKKNMAKARDLFLAM------PEKNSVSW----------------------------SA 106
                 + A  LF AM      P++ +V+                             + 
Sbjct: 116 AAAGRTSDALSLFRAMLGEGVIPDRVTVTTVLNLPGCTVPSLHPFAIKFGLDTHVFVCNT 175

Query: 107 MISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGL 166
           ++  Y + G L  A  +F     K  V + AM+ G  K G          L+L   M   
Sbjct: 176 LLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGL-----HTQALQLFAAMRRA 230

Query: 167 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 226
           GI     + SS+L   + ++ L LG QVH LV +S    +      L+  Y KC  L+D 
Sbjct: 231 GIPATHFTFSSILTVAAGMAHLLLGHQVHALVLRSTSVLNVFVNNSLLDFYSKCDCLDDM 290

Query: 227 CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHA 286
            +LF E+  +D V++N +I+ YA +      LRLF +M+  G     + +  +L      
Sbjct: 291 RRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSL 350

Query: 287 GLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKL 325
             V +G Q    +V   G+A++      ++D+  + G L
Sbjct: 351 PDVHIGKQIHAQLVL-LGLASEDLLGNALIDMYSKCGML 388


>gi|147805129|emb|CAN64485.1| hypothetical protein VITISV_035038 [Vitis vinifera]
          Length = 1740

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 215/498 (43%), Positives = 300/498 (60%), Gaps = 14/498 (2%)

Query: 55   VVAAFDFFQRLPIKDTASWNTMISG------FVQKKNMAKARDLFLAMPEKNSVSWSAMI 108
            +V A      +P +D  SWN++++G      F     + K  +L    P+  +++ S + 
Sbjct: 1177 LVEACRVLDZMPCRDVVSWNSLVAGCARNGQFDDALEVCKEMELLGLKPDAGTMA-SLLP 1235

Query: 109  SGYIEC-GQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLG 167
            +    C   +    E+F     KS+V+W  MI+ YM      NS   + + +   M    
Sbjct: 1236 AVTNTCLDNVSFVKEMFMKLANKSLVSWNVMIAVYMN-----NSMPAEAVDIFLQMEDHA 1290

Query: 168  IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC 227
            + P+A S++SVL  C  LS+L LG+++H+ V +  L  +      LI MY KCG LE A 
Sbjct: 1291 VDPDAISIASVLPACGDLSALLLGRRIHEYVVRKRLQPNLLLENALIDMYAKCGCLEYAR 1350

Query: 228  KLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG 287
            ++F +++ +DVV+W +MIS Y  +GKG  A+ LF +M+D G+ PDSI FV++L AC+HAG
Sbjct: 1351 EVFDQMKFRDVVSWTSMISAYGMNGKGRDAVSLFSRMQDLGLNPDSIAFVSVLSACSHAG 1410

Query: 288  LVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTL 347
            L+D G  YF  M  +  I  + +H+ CMVDLLGRAG++ EA   IK+MP +P   ++G L
Sbjct: 1411 LLDEGRYYFKLMTEECKIVPRIEHFVCMVDLLGRAGQVDEAYGFIKQMPMEPNERVWGAL 1470

Query: 348  LSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNV 407
            LSACRV+  + +   AA  LF L P   +G YV L+NIYA   +W+DV  +R  MK   +
Sbjct: 1471 LSACRVYSNMIIGLLAADQLFQLCPEQ-SGYYVLLSNIYAKAGRWEDVTTVRSIMKTKGI 1529

Query: 408  VKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGE 467
             KMPG S  E+   VH F +GD+ HP+   I+E+L  L  +MK AGYVP+ + ALH V E
Sbjct: 1530 KKMPGVSNFELDNRVHTFLAGDQSHPQSKQIYEELDVLVGKMKEAGYVPETDSALHDVEE 1589

Query: 468  EVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRD 527
            E KE  L  HSEKLAIAF ++    G+PIR+ KNLRVCGDCH A K IS I  REI +RD
Sbjct: 1590 EDKECHLAVHSEKLAIAFAILNTAPGSPIRITKNLRVCGDCHIAAKLISKIVGREITIRD 1649

Query: 528  TTRFHHFKDGTCSCGDYW 545
            T RFHHF +G CSCGDYW
Sbjct: 1650 TNRFHHFYNGVCSCGDYW 1667



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 72/250 (28%), Positives = 121/250 (48%), Gaps = 15/250 (6%)

Query: 107  MISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGL 166
            ++  Y  CG+      +F   P K+VV +  MI  Y     V N    D L + + M G 
Sbjct: 1066 LMRAYAVCGEPWSTRHIFDEIPKKNVVFFNVMIRSY-----VNNHLYSDALLVFKNMAGH 1120

Query: 167  GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 226
            GI P+  +   VL   S    L +G Q+H  V +  L  +      LISMY KCG L +A
Sbjct: 1121 GIDPDHYTYPCVLKASSGSEDLWVGMQIHAAVVRVGLDLNVFVGNGLISMYGKCGCLVEA 1180

Query: 227  CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHA 286
            C++  Z+  +DVV+WN++++G A++G+ + AL +  +M+  G+KPD+ T  +LL A  + 
Sbjct: 1181 CRVLDZMPCRDVVSWNSLVAGCARNGQFDDALEVCKEMELLGLKPDAGTMASLLPAVTNT 1240

Query: 287  GLVDLGI--QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP---FKPQP 341
             L ++    + F  + N   ++     +  M+ +        EAVD+  +M      P  
Sbjct: 1241 CLDNVSFVKEMFMKLANKSLVS-----WNVMIAVYMNNSMPAEAVDIFLQMEDHAVDPDA 1295

Query: 342  AIFGTLLSAC 351
                ++L AC
Sbjct: 1296 ISIASVLPAC 1305



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 90/388 (23%), Positives = 156/388 (40%), Gaps = 93/388 (23%)

Query: 1    MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIP----QPDVVSYNIMLSCILLNS-DDV 55
            M  +  V+WNS++AG A+  G+  DA E+  ++     +PD  +   +L  +     D+V
Sbjct: 1187 MPCRDVVSWNSLVAGCARN-GQFDDALEVCKEMELLGLKPDAGTMASLLPAVTNTCLDNV 1245

Query: 56   VAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM------PEKNSVS------ 103
                + F +L  K   SWN MI+ ++     A+A D+FL M      P+  S++      
Sbjct: 1246 SFVKEMFMKLANKSLVSWNVMIAVYMNNSMPAEAVDIFLQMEDHAVDPDAISIASVLPAC 1305

Query: 104  ---------------------------WSAMISGYIECGQLDKAVELFKVAPVKSVVAWT 136
                                        +A+I  Y +CG L+ A E+F     + VV+WT
Sbjct: 1306 GDLSALLLGRRIHEYVVRKRLQPNLLLENALIDMYAKCGCLEYAREVFDQMKFRDVVSWT 1365

Query: 137  AMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQ 196
            +MIS Y       N    D + L   M  LG+ P++ +  SVL  CSH   L  G+   +
Sbjct: 1366 SMISAYGM-----NGKGRDAVSLFSRMQDLGLNPDSIAFVSVLSACSHAGLLDEGRYYFK 1420

Query: 197  LVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEK 256
            L                         + + CK+   I+      +  M+    + G+ ++
Sbjct: 1421 L-------------------------MTEECKIVPRIEH-----FVCMVDLLGRAGQVDE 1450

Query: 257  ALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMV 316
            A     +M    M+P+   + ALL AC     + +G+   D +        +  +Y  + 
Sbjct: 1451 AYGFIKQMP---MEPNERVWGALLSACRVYSNMIIGLLAADQLFQ--LCPEQSGYYVLLS 1505

Query: 317  DLLGRAGKLVEAVDL--------IKKMP 336
            ++  +AG+  +   +        IKKMP
Sbjct: 1506 NIYAKAGRWEDVTTVRSIMKTKGIKKMP 1533


>gi|356544848|ref|XP_003540859.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 701

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 219/553 (39%), Positives = 310/553 (56%), Gaps = 49/553 (8%)

Query: 35  QPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFL 94
           + DV   N +LS +     DV AA   F R+ ++D  SWNTM+SGFV+      A ++F 
Sbjct: 156 EEDVYVGNSILS-MYFKFGDVEAARVVFDRMLVRDLTSWNTMMSGFVKNGEARGAFEVFG 214

Query: 95  AMPEK------------------------------------------NSVSWSAMISGYI 112
            M                                             N    +++I  Y 
Sbjct: 215 DMRRDGFVGDRTTLLALLSACGDVMDLKVGKEIHGYVVRNGESGRVCNGFLMNSIIDMYC 274

Query: 113 ECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNA 172
            C  +  A +LF+   VK VV+W ++ISGY K G      A   L+L   M+ +G  P+ 
Sbjct: 275 NCESVSCARKLFEGLRVKDVVSWNSLISGYEKCGD-----AFQALELFGRMVVVGAVPDE 329

Query: 173 SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLE 232
            ++ SVL  C+ +S+L+LG  V   V K     +    T LI MY  CG L  AC++F E
Sbjct: 330 VTVISVLAACNQISALRLGATVQSYVVKRGYVVNVVVGTALIGMYANCGSLVCACRVFDE 389

Query: 233 IQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 292
           +  K++     M++G+  HG+G +A+ +F +M  +G+ PD   F A+L AC+H+GLVD G
Sbjct: 390 MPEKNLPACTVMVTGFGIHGRGREAISIFYEMLGKGVTPDEGIFTAVLSACSHSGLVDEG 449

Query: 293 IQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACR 352
            + F  M  DY +  +P HY+C+VDLLGRAG L EA  +I+ M  KP   ++  LLSACR
Sbjct: 450 KEIFYKMTRDYSVEPRPTHYSCLVDLLGRAGYLDEAYAVIENMKLKPNEDVWTALLSACR 509

Query: 353 VHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPG 412
           +H+ + LA  +A  LF LNP   +G YV L+NIYAA ++W+DV  +R  + +  + K P 
Sbjct: 510 LHRNVKLAVISAQKLFELNPDGVSG-YVCLSNIYAAERRWEDVENVRALVAKRRLRKPPS 568

Query: 413 YSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQ 472
           YS++E+  +VH+F  GD  H +   I+ KLK+L +++K AGY PD    L+ V EE+KE+
Sbjct: 569 YSFVELNKMVHQFFVGDTSHEQSDDIYAKLKDLNEQLKKAGYKPDTSLVLYDVEEEIKEK 628

Query: 473 LLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFH 532
           +L  HSE+LA+AF LI    GT IR+ KNLRVCGDCH   K IS +  REII+RD  RFH
Sbjct: 629 MLWDHSERLALAFALINTGPGTTIRITKNLRVCGDCHTVIKMISKLTNREIIMRDICRFH 688

Query: 533 HFKDGTCSCGDYW 545
           HF+DG CSCG YW
Sbjct: 689 HFRDGLCSCGGYW 701



 Score =  115 bits (287), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 86/337 (25%), Positives = 152/337 (45%), Gaps = 49/337 (14%)

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM------------------------- 96
           F ++ +K++  WN+MI G+    + ++A  L+L M                         
Sbjct: 81  FDQIVLKNSFLWNSMIRGYACNNSPSRALFLYLKMLHFGQKPDNFTYPFVLKACGDLLLR 140

Query: 97  --------------PEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGY 142
                          E++    ++++S Y + G ++ A  +F    V+ + +W  M+SG+
Sbjct: 141 EMGRKVHALVVVGGLEEDVYVGNSILSMYFKFGDVEAARVVFDRMLVRDLTSWNTMMSGF 200

Query: 143 MKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK-- 200
           +K     N  A    ++   M   G   + ++L ++L  C  +  L++GK++H  V +  
Sbjct: 201 VK-----NGEARGAFEVFGDMRRDGFVGDRTTLLALLSACGDVMDLKVGKEIHGYVVRNG 255

Query: 201 -SPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALR 259
            S    +   +  +I MYC C  +  A KLF  ++ KDVV+WN++ISGY + G   +AL 
Sbjct: 256 ESGRVCNGFLMNSIIDMYCNCESVSCARKLFEGLRVKDVVSWNSLISGYEKCGDAFQALE 315

Query: 260 LFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLL 319
           LF +M   G  PD +T +++L ACN    + LG     S V   G        T ++ + 
Sbjct: 316 LFGRMVVVGAVPDEVTVISVLAACNQISALRLGAT-VQSYVVKRGYVVNVVVGTALIGMY 374

Query: 320 GRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKR 356
              G LV A  +  +MP K  PA    +++   +H R
Sbjct: 375 ANCGSLVCACRVFDEMPEKNLPAC-TVMVTGFGIHGR 410



 Score = 98.2 bits (243), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 61/220 (27%), Positives = 105/220 (47%), Gaps = 10/220 (4%)

Query: 69  DTASWNTMISGFVQKKNMAKARDLFLAMP-----EKNSVSWSAMISGYIECGQLDKAVEL 123
           D+    T++      K++ +A  L   +       +N+   + + + Y  CG +  A  +
Sbjct: 21  DSLQCGTLLQSLTNSKSLTQALQLHAHVTTGGTLRRNTYLATKLAACYAVCGHMPYAQHI 80

Query: 124 FKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCS 183
           F    +K+   W +MI GY       N+     L L   M+  G +P+  +   VL  C 
Sbjct: 81  FDQIVLKNSFLWNSMIRGY-----ACNNSPSRALFLYLKMLHFGQKPDNFTYPFVLKACG 135

Query: 184 HLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNA 243
            L   ++G++VH LV    L +D      ++SMY K GD+E A  +F  +  +D+ +WN 
Sbjct: 136 DLLLREMGRKVHALVVVGGLEEDVYVGNSILSMYFKFGDVEAARVVFDRMLVRDLTSWNT 195

Query: 244 MISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC 283
           M+SG+ ++G+   A  +F  M+ +G   D  T +ALL AC
Sbjct: 196 MMSGFVKNGEARGAFEVFGDMRRDGFVGDRTTLLALLSAC 235



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 63/277 (22%), Positives = 120/277 (43%), Gaps = 34/277 (12%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           + VK  V+WNS+++G+ K  G    A ELF ++     V   + +  +L       AA +
Sbjct: 289 LRVKDVVSWNSLISGYEKC-GDAFQALELFGRMVVVGAVPDEVTVISVL-------AACN 340

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
               L +  T     +  G+V                  N V  +A+I  Y  CG L  A
Sbjct: 341 QISALRLGATVQSYVVKRGYVV-----------------NVVVGTALIGMYANCGSLVCA 383

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLL 180
             +F   P K++ A T M++G+   G        + + +   M+G G+ P+    ++VL 
Sbjct: 384 CRVFDEMPEKNLPACTVMVTGFGIHGR-----GREAISIFYEMLGKGVTPDEGIFTAVLS 438

Query: 181 GCSHLSSLQLGKQV-HQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK-DV 238
            CSH   +  GK++ +++     +    T  + L+ +  + G L++A  +   ++ K + 
Sbjct: 439 ACSHSGLVDEGKEIFYKMTRDYSVEPRPTHYSCLVDLLGRAGYLDEAYAVIENMKLKPNE 498

Query: 239 VTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSIT 275
             W A++S    H   + A+    K+ +  + PD ++
Sbjct: 499 DVWTALLSACRLHRNVKLAVISAQKLFE--LNPDGVS 533



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 71/143 (49%), Gaps = 7/143 (4%)

Query: 157 LKLLRMMIGLGIRPNASSL------SSVLLGCSHLSSLQLGKQVH-QLVFKSPLCKDTTA 209
           + LL+    L  +P+++S        ++L   ++  SL    Q+H  +     L ++T  
Sbjct: 1   MSLLKTTATLIPKPSSTSTFDSLQCGTLLQSLTNSKSLTQALQLHAHVTTGGTLRRNTYL 60

Query: 210 LTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGM 269
            T L + Y  CG +  A  +F +I  K+   WN+MI GYA +    +AL L+ KM   G 
Sbjct: 61  ATKLAACYAVCGHMPYAQHIFDQIVLKNSFLWNSMIRGYACNNSPSRALFLYLKMLHFGQ 120

Query: 270 KPDSITFVALLLACNHAGLVDLG 292
           KPD+ T+  +L AC    L ++G
Sbjct: 121 KPDNFTYPFVLKACGDLLLREMG 143


>gi|356498743|ref|XP_003518209.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 573

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 204/527 (38%), Positives = 308/527 (58%), Gaps = 46/527 (8%)

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM------PEKNSVSW------- 104
           A+  F  L ++D+ +W+ M+ GF +  + A     F  +      P+  ++ +       
Sbjct: 54  AYSLFDGLTMRDSKTWSVMVGGFAKAGDHAGCYATFRELLRCGVTPDNYTLPFVIRTCRD 113

Query: 105 --------------------------SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAM 138
                                     ++++  Y +C  ++ A  LF+    K +V WT M
Sbjct: 114 RTDLQIGRVIHDVVLKHGLLSDHFVCASLVDMYAKCIVVEDAQRLFERMLSKDLVTWTVM 173

Query: 139 ISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLV 198
           I  Y       +  A + L L   M   G+ P+  ++ +V+  C+ L ++   +  +  +
Sbjct: 174 IGAY------ADCNAYESLVLFDRMREEGVVPDKVAMVTVVNACAKLGAMHRARFANDYI 227

Query: 199 FKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKAL 258
            ++    D    T +I MY KCG +E A ++F  ++ K+V++W+AMI+ Y  HG+G+ A+
Sbjct: 228 VRNGFSLDVILGTAMIDMYAKCGSVESAREVFDRMKEKNVISWSAMIAAYGYHGRGKDAI 287

Query: 259 RLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDL 318
            LF  M    + P+ +TFV+LL AC+HAGL++ G+++F+SM  ++ +     HYTCMVDL
Sbjct: 288 DLFHMMLSCAILPNRVTFVSLLYACSHAGLIEEGLRFFNSMWEEHAVRPDVKHYTCMVDL 347

Query: 319 LGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGC 378
           LGRAG+L EA+ LI+ M  +    ++  LL ACR+H +++LAE AA +L  L P N  G 
Sbjct: 348 LGRAGRLDEALRLIEAMTVEKDERLWSALLGACRIHSKMELAEKAANSLLELQPQNP-GH 406

Query: 379 YVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSI 438
           YV L+NIYA   KW+ VA+ R  M +  + K+PG++WIEV    ++F  GDR HP+   I
Sbjct: 407 YVLLSNIYAKAGKWEKVAKFRDMMTQRKLKKIPGWTWIEVDNKTYQFSVGDRSHPQSKEI 466

Query: 439 HEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRV 498
           +E L  L K++++AGYVPD +F L  V EEVK+++L  HSEKLAIAFGLI +P G PIR+
Sbjct: 467 YEMLMSLIKKLEMAGYVPDTDFVLQDVEEEVKQEMLYTHSEKLAIAFGLIAIPEGEPIRI 526

Query: 499 FKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
            KNLRVCGDCH  +K +S+I +R IIVRD  RFHHF DGTCSCGDYW
Sbjct: 527 SKNLRVCGDCHTFSKMVSSIMRRSIIVRDANRFHHFNDGTCSCGDYW 573



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 70/236 (29%), Positives = 113/236 (47%), Gaps = 15/236 (6%)

Query: 107 MISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGL 166
           ++  Y +   +D A  LF    ++    W+ M+ G+ K G     +A       R ++  
Sbjct: 41  LLYTYAQHKAIDDAYSLFDGLTMRDSKTWSVMVGGFAKAGDHAGCYAT-----FRELLRC 95

Query: 167 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 226
           G+ P+  +L  V+  C   + LQ+G+ +H +V K  L  D      L+ MY KC  +EDA
Sbjct: 96  GVTPDNYTLPFVIRTCRDRTDLQIGRVIHDVVLKHGLLSDHFVCASLVDMYAKCIVVEDA 155

Query: 227 CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHA 286
            +LF  +  KD+VTW  MI  YA     E +L LFD+M++EG+ PD +  V ++ AC   
Sbjct: 156 QRLFERMLSKDLVTWTVMIGAYADCNAYE-SLVLFDRMREEGVVPDKVAMVTVVNAC--- 211

Query: 287 GLVDLGIQYFDSMVNDY----GIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 338
               LG  +     NDY    G +      T M+D+  + G +  A ++  +M  K
Sbjct: 212 --AKLGAMHRARFANDYIVRNGFSLDVILGTAMIDMYAKCGSVESAREVFDRMKEK 265



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 64/247 (25%), Positives = 121/247 (48%), Gaps = 21/247 (8%)

Query: 23  LKDAQELFDKIPQPDVVSYNIMLSCIL-LNSDDVVAAFDFFQRLP-IKDTASWNTMISGF 80
           ++DAQ LF+++   D+V++ +M+      N+ + +  FD  +    + D  +  T+++  
Sbjct: 152 VEDAQRLFERMLSKDLVTWTVMIGAYADCNAYESLVLFDRMREEGVVPDKVAMVTVVNAC 211

Query: 81  VQKKNMAKAR---DLFLAMPEKNSVSW-----SAMISGYIECGQLDKAVELFKVAPVKSV 132
            +   M +AR   D  +    +N  S      +AMI  Y +CG ++ A E+F     K+V
Sbjct: 212 AKLGAMHRARFANDYIV----RNGFSLDVILGTAMIDMYAKCGSVESAREVFDRMKEKNV 267

Query: 133 VAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGK 192
           ++W+AMI+ Y   GY  +   +D + L  MM+   I PN  +  S+L  CSH   ++ G 
Sbjct: 268 ISWSAMIAAY---GY--HGRGKDAIDLFHMMLSCAILPNRVTFVSLLYACSHAGLIEEGL 322

Query: 193 QVHQLVFKSPLCK-DTTALTPLISMYCKCGDLEDACKLFLEIQ-RKDVVTWNAMISGYAQ 250
           +    +++    + D    T ++ +  + G L++A +L   +   KD   W+A++     
Sbjct: 323 RFFNSMWEEHAVRPDVKHYTCMVDLLGRAGRLDEALRLIEAMTVEKDERLWSALLGACRI 382

Query: 251 HGKGEKA 257
           H K E A
Sbjct: 383 HSKMELA 389



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 78/166 (46%), Gaps = 8/166 (4%)

Query: 172 ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFL 231
           A S   +LL C ++  +   +QVH  V  +   +D      L+  Y +   ++DA  LF 
Sbjct: 3   AESCIDLLLRCRNVFHI---RQVHAHVVANGTLQDLVIANKLLYTYAQHKAIDDAYSLFD 59

Query: 232 EIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDL 291
            +  +D  TW+ M+ G+A+ G        F ++   G+ PD+ T   ++  C     + +
Sbjct: 60  GLTMRDSKTWSVMVGGFAKAGDHAGCYATFRELLRCGVTPDNYTLPFVIRTCRDRTDLQI 119

Query: 292 GIQYFDSMVNDYGIAAKPDHYTC--MVDLLGRAGKLVEAVDLIKKM 335
           G +    +V  +G+ +  DH+ C  +VD+  +   + +A  L ++M
Sbjct: 120 G-RVIHDVVLKHGLLS--DHFVCASLVDMYAKCIVVEDAQRLFERM 162


>gi|125557011|gb|EAZ02547.1| hypothetical protein OsI_24658 [Oryza sativa Indica Group]
          Length = 635

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 207/478 (43%), Positives = 286/478 (59%), Gaps = 7/478 (1%)

Query: 69  DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAP 128
           D+     ++  + +  +   AR LF  MP+ + V  +AM++ Y + G LD A ELF   P
Sbjct: 164 DSYVATALLGMYARGGDADAARALFDEMPDPHVVPVTAMLTCYAKMGALDDARELFDGMP 223

Query: 129 VKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSL 188
            K  + W AMI GY + G        + L+L R M+  G+ P+  ++   L   + L + 
Sbjct: 224 SKDFICWNAMIDGYTQHGR-----PNEALRLFRWMLRSGVDPDEVAIILALSAVAQLGTA 278

Query: 189 QLGKQVHQLVFKSPLCK-DTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISG 247
           + G+ +H  V  S   + +    T LI MYCKCG LEDA  +F  I  KD+V WNAMI+G
Sbjct: 279 ESGRWLHSYVKNSRRVQLNARVGTALIDMYCKCGSLEDAVSVFNSIGDKDIVVWNAMING 338

Query: 248 YAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAA 307
           YA HG   KAL +F +++ +G+ P  ITF+ LL AC+H+GLVD G Q+F SM  +Y I  
Sbjct: 339 YAMHGDSRKALEMFSQLRSQGLWPTDITFIGLLNACSHSGLVDEGHQFFQSMEEEYAIVP 398

Query: 308 KPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNL 367
           K +HY CMVDLLGRAG + EA  L++ M   P   ++ +LL+ACR+HK + L +  A  L
Sbjct: 399 KIEHYGCMVDLLGRAGLIEEAFHLVQSMTIAPDTVMWVSLLAACRLHKNMALGQQIADYL 458

Query: 368 FNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRS 427
                AN+ G Y+ L+NIYAA+  W++VAR+R  MK + + K PG S IEVG  V+EF +
Sbjct: 459 VAGGLANS-GMYILLSNIYAAVGNWEEVARVRSMMKASGIQKEPGCSAIEVGRKVYEFVA 517

Query: 428 GDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGL 487
           GD  HP    I+  L+++   +K  G+VP  E  LH + E  KE+ L  HSEKLA+AFGL
Sbjct: 518 GDMSHPRTDEIYAMLEKMNGIVKEQGHVPQTELVLHDLDEVTKEKALAVHSEKLAVAFGL 577

Query: 488 IKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           I    G  I++ KNLR C DCH   K IS I  R+I+ RD  RFHHF DG+C+CGDYW
Sbjct: 578 ISTAPGETIKIVKNLRACADCHAVLKLISKITGRKIVFRDRNRFHHFVDGSCTCGDYW 635



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 109/256 (42%), Gaps = 39/256 (15%)

Query: 111 YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRP 170
           Y    +LD  V L ++ P  + V +T+ I  +   G    +     L LL  M+G G+ P
Sbjct: 77  YAASDRLDLTVTLLRLTPDPTTVFYTSAIHAHSSRGLHLAA-----LALLSEMLGRGLIP 131

Query: 171 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGD-------- 222
            + +LSS L  C     L LG+ +H   FK  L  D+   T L+ MY + GD        
Sbjct: 132 TSHTLSSSLPACH---GLALGRALHAYAFKLALAGDSYVATALLGMYARGGDADAARALF 188

Query: 223 -----------------------LEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALR 259
                                  L+DA +LF  +  KD + WNAMI GY QHG+  +ALR
Sbjct: 189 DEMPDPHVVPVTAMLTCYAKMGALDDARELFDGMPSKDFICWNAMIDGYTQHGRPNEALR 248

Query: 260 LFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLL 319
           LF  M   G+ PD +  +  L A    G  + G      + N   +       T ++D+ 
Sbjct: 249 LFRWMLRSGVDPDEVAIILALSAVAQLGTAESGRWLHSYVKNSRRVQLNARVGTALIDMY 308

Query: 320 GRAGKLVEAVDLIKKM 335
            + G L +AV +   +
Sbjct: 309 CKCGSLEDAVSVFNSI 324


>gi|115470299|ref|NP_001058748.1| Os07g0113500 [Oryza sativa Japonica Group]
 gi|22831309|dbj|BAC16163.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|24414055|dbj|BAC22304.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113610284|dbj|BAF20662.1| Os07g0113500 [Oryza sativa Japonica Group]
 gi|125598898|gb|EAZ38474.1| hypothetical protein OsJ_22862 [Oryza sativa Japonica Group]
          Length = 634

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 207/478 (43%), Positives = 286/478 (59%), Gaps = 7/478 (1%)

Query: 69  DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAP 128
           D+     ++  + +  +   AR LF  MP+ + V  +AM++ Y + G LD A ELF   P
Sbjct: 163 DSYVATALLGMYARGGDADAARALFDEMPDPHVVPVTAMLTCYAKMGALDDARELFDGMP 222

Query: 129 VKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSL 188
            K  + W AMI GY + G        + L+L R M+  G+ P+  ++   L   + L + 
Sbjct: 223 SKDFICWNAMIDGYTQHGR-----PNEALRLFRWMLRSGVDPDEVAIILALSAVAQLGTA 277

Query: 189 QLGKQVHQLVFKSPLCK-DTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISG 247
           + G+ +H  V  S   + +    T LI MYCKCG LEDA  +F  I  KD+V WNAMI+G
Sbjct: 278 ESGRWLHSYVKNSRRVQLNARVGTALIDMYCKCGSLEDAVSVFNSIGDKDIVVWNAMING 337

Query: 248 YAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAA 307
           YA HG   KAL +F +++ +G+ P  ITF+ LL AC+H+GLVD G Q+F SM  +Y I  
Sbjct: 338 YAMHGDSRKALEMFSQLRSQGLWPTDITFIGLLNACSHSGLVDEGHQFFQSMEEEYAIVP 397

Query: 308 KPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNL 367
           K +HY CMVDLLGRAG + EA  L++ M   P   ++ +LL+ACR+HK + L +  A  L
Sbjct: 398 KIEHYGCMVDLLGRAGLIEEAFHLVQSMTIAPDTVMWVSLLAACRLHKNMALGQQIADYL 457

Query: 368 FNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRS 427
                AN+ G Y+ L+NIYAA+  W++VAR+R  MK + + K PG S IEVG  V+EF +
Sbjct: 458 VAGGLANS-GMYILLSNIYAAVGNWEEVARVRSMMKASGIQKEPGCSAIEVGRKVYEFVA 516

Query: 428 GDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGL 487
           GD  HP    I+  L+++   +K  G+VP  E  LH + E  KE+ L  HSEKLA+AFGL
Sbjct: 517 GDMSHPRTDEIYAMLEKMNGIVKEQGHVPQTELVLHDLDEVTKEKALAVHSEKLAVAFGL 576

Query: 488 IKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           I    G  I++ KNLR C DCH   K IS I  R+I+ RD  RFHHF DG+C+CGDYW
Sbjct: 577 ISTAPGETIKIVKNLRACADCHAVLKLISKITGRKIVFRDRNRFHHFVDGSCTCGDYW 634



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 109/256 (42%), Gaps = 39/256 (15%)

Query: 111 YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRP 170
           Y    +LD  V L ++ P  + V +T+ I  +   G    +     L LL  M+G G+ P
Sbjct: 76  YAASDRLDLTVTLLRLTPDPTTVFYTSAIHAHSSRGLHLAA-----LALLSEMLGRGLIP 130

Query: 171 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGD-------- 222
            + +LSS L  C     L LG+ +H   FK  L  D+   T L+ MY + GD        
Sbjct: 131 TSHTLSSSLPACH---GLALGRALHAYAFKLALAGDSYVATALLGMYARGGDADAARALF 187

Query: 223 -----------------------LEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALR 259
                                  L+DA +LF  +  KD + WNAMI GY QHG+  +ALR
Sbjct: 188 DEMPDPHVVPVTAMLTCYAKMGALDDARELFDGMPSKDFICWNAMIDGYTQHGRPNEALR 247

Query: 260 LFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLL 319
           LF  M   G+ PD +  +  L A    G  + G      + N   +       T ++D+ 
Sbjct: 248 LFRWMLRSGVDPDEVAIILALSAVAQLGTAESGRWLHSYVKNSRRVQLNARVGTALIDMY 307

Query: 320 GRAGKLVEAVDLIKKM 335
            + G L +AV +   +
Sbjct: 308 CKCGSLEDAVSVFNSI 323


>gi|413942600|gb|AFW75249.1| hypothetical protein ZEAMMB73_388642 [Zea mays]
          Length = 693

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 219/532 (41%), Positives = 306/532 (57%), Gaps = 49/532 (9%)

Query: 55  VVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK--------------- 99
           V AA   F  +P++++ SWN MI G+    N  +A  LF  M ++               
Sbjct: 170 VEAARAVFDCMPVRNSVSWNAMIDGYADNGNATEAMALFWRMVQEGVDVTDASVLAALQA 229

Query: 100 ------------------------NSVSWSAMISGYIECGQLDKAVELF-KVAPVKSVVA 134
                                   N    +A+I+ Y +C + D A ++F ++   K+ ++
Sbjct: 230 CGELGYLDEVRRVHELLVRVGLSSNVSVTNALITTYAKCKRADLAAQVFNELGNKKTRIS 289

Query: 135 WTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQV 194
           W AMI      G+ +N   ED  +L   M    +RP++ +L SV+   + +S     + +
Sbjct: 290 WNAMI-----LGFTQNECPEDAERLFARMQLENVRPDSFTLVSVIPAVADISDPLQARWI 344

Query: 195 HQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKG 254
           H    +  L +D   LT LI MY KCG +  A +LF   + + V+TWNAMI GY  HG G
Sbjct: 345 HGYSIRHQLDQDVYVLTALIDMYSKCGRVSIARRLFDSARDRHVITWNAMIHGYGSHGFG 404

Query: 255 EKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTC 314
           + A+ LF++MK  G  P+  TF+++L AC+HAGLVD G +YF SM  DYG+    +HY  
Sbjct: 405 QAAVELFEEMKGTGSLPNETTFLSVLAACSHAGLVDEGQKYFASMKKDYGLEPGMEHYGT 464

Query: 315 MVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPAN 374
           MVDLLGRAGKL EA   IK MP +P  +++G +L AC++HK ++LAE +A  +F L P  
Sbjct: 465 MVDLLGRAGKLDEAWSFIKNMPIEPGISVYGAMLGACKLHKNVELAEESAQIIFELGPEE 524

Query: 375 AAGCY-VQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHP 433
             G Y V LANIYA    W DVAR+R +M++  + K PG+S I++   VH F SG   H 
Sbjct: 525 --GVYHVLLANIYANASMWKDVARVRTAMEKKGLQKTPGWSIIQLKNEVHTFYSGSTNHQ 582

Query: 434 ELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLG 493
               I+ +L +L + +K  GYVPD + ++H V ++VK QLL  HSEKLAIA+GLI+   G
Sbjct: 583 HAKDIYARLAKLIEEIKDMGYVPDTD-SIHDVEDDVKAQLLNTHSEKLAIAYGLIRTAPG 641

Query: 494 TPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           T I++ KNLRVC DCH ATK IS +  REII+RD  RFHHFKDG CSCGDYW
Sbjct: 642 TTIQIKKNLRVCNDCHNATKLISLLTGREIIMRDIQRFHHFKDGKCSCGDYW 693



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 81/316 (25%), Positives = 156/316 (49%), Gaps = 26/316 (8%)

Query: 25  DAQELFDKIPQPDVVSYNIMLSCILLN-----SDDVVAAFDFFQRLPIKDTASWNTMISG 79
           DA+ +FD++P  D V++N +++    N     + + V      +     D+ +  +++  
Sbjct: 69  DARRVFDRMPSRDRVAWNAVVAGYARNGLPSSAMEAVVRMQGEEGGERPDSVTLVSVLPA 128

Query: 80  FVQKKNMAKARD-----LFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVA 134
               + +   R+     L   + E  +VS +A++  Y +CG ++ A  +F   PV++ V+
Sbjct: 129 CADARALHACREVHAFALRAGLDELVNVS-TAVLDAYCKCGAVEAARAVFDCMPVRNSVS 187

Query: 135 WTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQV 194
           W AMI      GY +N  A + + L   M+  G+    +S+ + L  C  L  L   ++V
Sbjct: 188 WNAMID-----GYADNGNATEAMALFWRMVQEGVDVTDASVLAALQACGELGYLDEVRRV 242

Query: 195 HQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI-QRKDVVTWNAMISGYAQHGK 253
           H+L+ +  L  + +    LI+ Y KC   + A ++F E+  +K  ++WNAMI G+ Q+  
Sbjct: 243 HELLVRVGLSSNVSVTNALITTYAKCKRADLAAQVFNELGNKKTRISWNAMILGFTQNEC 302

Query: 254 GEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDH-- 311
            E A RLF +M+ E ++PDS T V+++ A     + D+        ++ Y I  + D   
Sbjct: 303 PEDAERLFARMQLENVRPDSFTLVSVIPA-----VADISDPLQARWIHGYSIRHQLDQDV 357

Query: 312 --YTCMVDLLGRAGKL 325
              T ++D+  + G++
Sbjct: 358 YVLTALIDMYSKCGRV 373



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 59/192 (30%), Positives = 101/192 (52%), Gaps = 7/192 (3%)

Query: 101 SVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLL 160
           S++ +A+ + Y +C +   A  +F   P +  VAW A+++GY +     N      ++ +
Sbjct: 51  SIASTALANMYFKCRRPADARRVFDRMPSRDRVAWNAVVAGYAR-----NGLPSSAMEAV 105

Query: 161 RMMIGL--GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYC 218
             M G   G RP++ +L SVL  C+   +L   ++VH    ++ L +     T ++  YC
Sbjct: 106 VRMQGEEGGERPDSVTLVSVLPACADARALHACREVHAFALRAGLDELVNVSTAVLDAYC 165

Query: 219 KCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVA 278
           KCG +E A  +F  +  ++ V+WNAMI GYA +G   +A+ LF +M  EG+     + +A
Sbjct: 166 KCGAVEAARAVFDCMPVRNSVSWNAMIDGYADNGNATEAMALFWRMVQEGVDVTDASVLA 225

Query: 279 LLLACNHAGLVD 290
            L AC   G +D
Sbjct: 226 ALQACGELGYLD 237



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/119 (33%), Positives = 67/119 (56%), Gaps = 2/119 (1%)

Query: 170 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 229
           P   + +++L  C+  + L  G+ VH  +    L  ++ A T L +MY KC    DA ++
Sbjct: 14  PVLRTFTALLKLCAARADLATGRAVHAQLEARGLASESIASTALANMYFKCRRPADARRV 73

Query: 230 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE--GMKPDSITFVALLLACNHA 286
           F  +  +D V WNA+++GYA++G    A+    +M+ E  G +PDS+T V++L AC  A
Sbjct: 74  FDRMPSRDRVAWNAVVAGYARNGLPSSAMEAVVRMQGEEGGERPDSVTLVSVLPACADA 132



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 51/192 (26%), Positives = 89/192 (46%), Gaps = 30/192 (15%)

Query: 2   NVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDF 61
           N KT ++WN+++ GF +     +DA+ LF ++   +V   +  L  ++    D+    D 
Sbjct: 283 NKKTRISWNAMILGFTQNECP-EDAERLFARMQLENVRPDSFTLVSVIPAVADIS---DP 338

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAV 121
            Q       A W   I G+  +  + +  D+++          +A+I  Y +CG++  A 
Sbjct: 339 LQ-------ARW---IHGYSIRHQLDQ--DVYV---------LTALIDMYSKCGRVSIAR 377

Query: 122 ELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLG 181
            LF  A  + V+ W AMI GY   G+      +  ++L   M G G  PN ++  SVL  
Sbjct: 378 RLFDSARDRHVITWNAMIHGYGSHGF-----GQAAVELFEEMKGTGSLPNETTFLSVLAA 432

Query: 182 CSHLSSLQLGKQ 193
           CSH   +  G++
Sbjct: 433 CSHAGLVDEGQK 444


>gi|296087881|emb|CBI35164.3| unnamed protein product [Vitis vinifera]
          Length = 663

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 228/566 (40%), Positives = 319/566 (56%), Gaps = 72/566 (12%)

Query: 6   TVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRL 65
           +  WN V+  + K R + ++A  ++ ++ + D    N M   +L     V          
Sbjct: 124 SAQWNFVITSYTK-RNQPRNALNVYAQLRKMDFEVDNFMAPSVLKACGQV---------- 172

Query: 66  PIKDTASWNTM---ISGFVQKKNMAK--------------------ARDLFLAMPEKNSV 102
                 SW  +   I GFV KK + +                    AR +F  M E++ V
Sbjct: 173 ------SWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVV 226

Query: 103 SW----SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLK 158
           SW    +A++  Y +CG L  A +LF     K+VV+WTAMI+G ++     ++  E+G K
Sbjct: 227 SWIPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIR-----SNRLEEGTK 281

Query: 159 LLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYC 218
           L   M    I PN  ++              L K+  ++        D    T L+ MY 
Sbjct: 282 LFIRMQEENIFPNEITM--------------LNKERVEV--------DCILNTALVDMYA 319

Query: 219 KCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVA 278
           KCGD+  A +LF+E   +D+  WNA+I+G+A HG GE+AL +F +M+ +G+KP+ ITF+ 
Sbjct: 320 KCGDINAAGRLFIEAISRDICMWNAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIG 379

Query: 279 LLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 338
           LL AC+HAGLV  G + F+ MV+ +G+  + +HY CMVDLLGRAG L EA ++IK MP K
Sbjct: 380 LLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIK 439

Query: 339 PQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARI 398
           P   ++G L++ACR+HK   L E AA  L  + P N  G  V ++NIYAA  +W D A +
Sbjct: 440 PNTIVWGALVAACRLHKNPQLGELAATQLLEIEPENC-GYNVLMSNIYAAANRWSDAAGV 498

Query: 399 RLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDL 458
           R +MK   + K PG+S IEV   VHEF  GD+ HP++  I+E L E+ +++  AGYVPD 
Sbjct: 499 RKTMKTVGMKKEPGHSVIEVNGTVHEFLMGDQSHPQIRRINEMLAEMRRKLNEAGYVPDT 558

Query: 459 EFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAI 518
              L  + EE KE  L +HSEKLA+AFGLI     TPIR+ KNLRVC DCH ATK +S I
Sbjct: 559 STVLLNIDEEEKETALTYHSEKLAMAFGLISTAPSTPIRIVKNLRVCNDCHAATKLLSKI 618

Query: 519 EKREIIVRDTTRFHHFKDGTCSCGDY 544
             R IIVRD  RFHHF++G CSCGDY
Sbjct: 619 YGRVIIVRDRNRFHHFREGYCSCGDY 644


>gi|15128441|dbj|BAB62625.1| P0402A09.8 [Oryza sativa Japonica Group]
 gi|20804430|dbj|BAB92127.1| P0455C04.2 [Oryza sativa Japonica Group]
          Length = 1122

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 211/544 (38%), Positives = 324/544 (59%), Gaps = 15/544 (2%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLN--SDDVVAAFDFFQRLPI 67
           N+ L  F  +   L D + LFD++P+ D VSYN++++    N  +  V+  F   Q+L  
Sbjct: 274 NNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGF 333

Query: 68  -KDTASWNTMIS--GFVQKKNMAK---ARDLFLAMPEKNSVSWSAMISGYIECGQLDKAV 121
            +    + TM+S  G +   ++ K   A+ + L +  ++ +  +A+I  Y +CG LD A 
Sbjct: 334 DRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLG-NALIDMYSKCGMLDAAK 392

Query: 122 ELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLG 181
             F     KS ++WTA+I+GY     V+N   E+ L+L   M   G+RP+ ++ SS++  
Sbjct: 393 SNFSNRSEKSAISWTALITGY-----VQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKA 447

Query: 182 CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTW 241
            S L+ + LG+Q+H  + +S       + + L+ MY KCG L++A + F E+  ++ ++W
Sbjct: 448 SSSLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSISW 507

Query: 242 NAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN 301
           NA+IS YA +G+ + A+++F+ M   G  PDS+TF+++L AC+H GL D  ++YF  M +
Sbjct: 508 NAVISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAACSHNGLADECMKYFHLMKH 567

Query: 302 DYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAE 361
            Y I+   +HY C++D LGR G   +   ++ +MPFK  P I+ ++L +CR+H   +LA 
Sbjct: 568 QYSISPWKEHYACVIDTLGRVGCFSQVQKMLVEMPFKADPIIWTSILHSCRIHGNQELAR 627

Query: 362 FAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTV 421
            AA  LF + P +A   YV L+NIYA   +W+D A ++  M++  V K  GYSW+E+   
Sbjct: 628 VAADKLFGMEPTDATP-YVILSNIYARAGQWEDAACVKKIMRDRGVRKESGYSWVEIKQK 686

Query: 422 VHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKL 481
           ++ F S D   P +  I ++L  L K M   GY PD+  ALH V  E+K + L +HSE+L
Sbjct: 687 IYSFASNDLTSPMIDEIKDELDRLYKEMDKQGYKPDITCALHMVDHELKLESLKYHSERL 746

Query: 482 AIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSC 541
           AIAF L+  P GTPIR+ KNL  C DCH   K IS I  R+IIVRD+ RFHHFKDG CSC
Sbjct: 747 AIAFALMNTPAGTPIRIMKNLTACLDCHAVIKMISKIVNRDIIVRDSRRFHHFKDGVCSC 806

Query: 542 GDYW 545
           GDYW
Sbjct: 807 GDYW 810



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/228 (30%), Positives = 110/228 (48%), Gaps = 24/228 (10%)

Query: 70  TASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPV 129
           T   N  +   +   ++ +AR +F  MP KN  S + ++S Y   G L  A  LF  +P 
Sbjct: 43  TYRLNLGLRSLLSSGHLHRARAMFDQMPHKNIFSLNLILSAYSSSGDLPAAQHLFLSSPH 102

Query: 130 KSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVL--LGCS---- 183
           ++   WT M+  +   G        D L L R M+G G+ P+  ++++VL   GC+    
Sbjct: 103 RNATTWTIMMRAHAAAGRTS-----DALSLFRAMLGEGVIPDRVTVTTVLNLPGCTVPSL 157

Query: 184 HLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNA 243
           H  +++ G   H  V  +           L+  YCK G L  A ++FLE+  KD VT+NA
Sbjct: 158 HPFAIKFGLDTHVFVCNT-----------LLDAYCKHGLLAAARRVFLEMHDKDAVTYNA 206

Query: 244 MISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDL 291
           M+ G ++ G   +AL+LF  M+  G+     TF ++L     AG+  L
Sbjct: 207 MMMGCSKEGLHTQALQLFAAMRRAGIPATHFTFSSILTVA--AGMAHL 252



 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 85/339 (25%), Positives = 144/339 (42%), Gaps = 41/339 (12%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G L  A+ +FD++P  ++ S N++LS    +S D+ AA   F   P ++  +W  M+   
Sbjct: 57  GHLHRARAMFDQMPHKNIFSLNLILSA-YSSSGDLPAAQHLFLSSPHRNATTWTIMMRAH 115

Query: 81  VQKKNMAKARDLFLAM------PEKNSVSW----------------------------SA 106
                 + A  LF AM      P++ +V+                             + 
Sbjct: 116 AAAGRTSDALSLFRAMLGEGVIPDRVTVTTVLNLPGCTVPSLHPFAIKFGLDTHVFVCNT 175

Query: 107 MISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGL 166
           ++  Y + G L  A  +F     K  V + AM+ G  K G    +     L+L   M   
Sbjct: 176 LLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQA-----LQLFAAMRRA 230

Query: 167 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 226
           GI     + SS+L   + ++ L LG QVH LV +S    +      L+  Y KC  L+D 
Sbjct: 231 GIPATHFTFSSILTVAAGMAHLLLGHQVHALVLRSTSVLNVFVNNSLLDFYSKCDCLDDM 290

Query: 227 CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHA 286
            +LF E+  +D V++N +I+ YA +      LRLF +M+  G     + +  +L      
Sbjct: 291 RRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSL 350

Query: 287 GLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKL 325
             V +G Q    +V   G+A++      ++D+  + G L
Sbjct: 351 PDVHIGKQIHAQLVL-LGLASEDLLGNALIDMYSKCGML 388


>gi|15237442|ref|NP_199458.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170604|sp|Q9FHF9.1|PP419_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g46460, mitochondrial; Flags: Precursor
 gi|10177583|dbj|BAB10814.1| unnamed protein product [Arabidopsis thaliana]
 gi|332008005|gb|AED95388.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 697

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 226/586 (38%), Positives = 330/586 (56%), Gaps = 52/586 (8%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  ++ V+W +++ G  +  GK+  A+ LF ++P  D  ++N M+    L    V  A  
Sbjct: 123 MPERSVVSWTAMVNGCFRS-GKVDQAERLFYQMPVKDTAAWNSMVHG-YLQFGKVDDALK 180

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLF--------------------------- 93
            F+++P K+  SW TMI G  Q +   +A DLF                           
Sbjct: 181 LFKQMPGKNVISWTTMICGLDQNERSGEALDLFKNMLRCCIKSTSRPFTCVITACANAPA 240

Query: 94  -------------LAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMIS 140
                        L    +  VS +++I+ Y  C ++  + ++F     + V  WTA++S
Sbjct: 241 FHMGIQVHGLIIKLGFLYEEYVS-ASLITFYANCKRIGDSRKVFDEKVHEQVAVWTALLS 299

Query: 141 GYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK 200
           GY       N   ED L +   M+   I PN S+ +S L  CS L +L  GK++H +  K
Sbjct: 300 GYSL-----NKKHEDALSIFSGMLRNSILPNQSTFASGLNSCSALGTLDWGKEMHGVAVK 354

Query: 201 SPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRL 260
             L  D      L+ MY   G++ DA  +F++I +K +V+WN++I G AQHG+G+ A  +
Sbjct: 355 LGLETDAFVGNSLVVMYSDSGNVNDAVSVFIKIFKKSIVSWNSIIVGCAQHGRGKWAFVI 414

Query: 261 FDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYG-IAAKPDHYTCMVDLL 319
           F +M     +PD ITF  LL AC+H G ++ G + F  M +    I  K  HYTCMVD+L
Sbjct: 415 FGQMIRLNKEPDEITFTGLLSACSHCGFLEKGRKLFYYMSSGINHIDRKIQHYTCMVDIL 474

Query: 320 GRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCY 379
           GR GKL EA +LI++M  KP   ++  LLSACR+H  +D  E AA  +FNL+  ++A  Y
Sbjct: 475 GRCGKLKEAEELIERMVVKPNEMVWLALLSACRMHSDVDRGEKAAAAIFNLDSKSSAA-Y 533

Query: 380 VQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIH 439
           V L+NIYA+  +W +V+++R+ MK+N ++K PG SW+ +    HEF SGD+  P    I+
Sbjct: 534 VLLSNIYASAGRWSNVSKLRVKMKKNGIMKKPGSSWVVIRGKKHEFFSGDQ--PHCSRIY 591

Query: 440 EKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVF 499
           EKL+ L +++K  GY PD   ALH V +E KE++L +HSE+LAIAFGLI    G+ + V 
Sbjct: 592 EKLEFLREKLKELGYAPDYRSALHDVEDEQKEEMLWYHSERLAIAFGLINTVEGSAVTVM 651

Query: 500 KNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           KNLRVC DCH   K IS +  REI++RD  RFHHFK+GTCSCGDYW
Sbjct: 652 KNLRVCEDCHTVIKLISGVVGREIVLRDPIRFHHFKNGTCSCGDYW 697



 Score =  179 bits (453), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 110/379 (29%), Positives = 185/379 (48%), Gaps = 31/379 (8%)

Query: 22  KLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFV 81
           ++ +A+E+F+++P P V  Y  M++     S+ +V A + F  +P++D  SWN+MISG V
Sbjct: 50  RIDEAREVFNQVPSPHVSLYTKMITG-YTRSNRLVDALNLFDEMPVRDVVSWNSMISGCV 108

Query: 82  QKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISG 141
           +  +M  A  LF  MPE++ VSW+AM++G    G++D+A  LF   PVK   AW +M+ G
Sbjct: 109 ECGDMNTAVKLFDEMPERSVVSWTAMVNGCFRSGKVDQAERLFYQMPVKDTAAWNSMVHG 168

Query: 142 YMKFGYVEN--------------SWAE------------DGLKLLRMMIGLGIRPNASSL 175
           Y++FG V++              SW              + L L + M+   I+  +   
Sbjct: 169 YLQFGKVDDALKLFKQMPGKNVISWTTMICGLDQNERSGEALDLFKNMLRCCIKSTSRPF 228

Query: 176 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR 235
           + V+  C++  +  +G QVH L+ K     +      LI+ Y  C  + D+ K+F E   
Sbjct: 229 TCVITACANAPAFHMGIQVHGLIIKLGFLYEEYVSASLITFYANCKRIGDSRKVFDEKVH 288

Query: 236 KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQY 295
           + V  W A++SGY+ + K E AL +F  M    + P+  TF + L +C+  G +D G + 
Sbjct: 289 EQVAVWTALLSGYSLNKKHEDALSIFSGMLRNSILPNQSTFASGLNSCSALGTLDWGKEM 348

Query: 296 FDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHK 355
               V   G+         +V +   +G + +AV +  K+ FK     + +++  C  H 
Sbjct: 349 HGVAVK-LGLETDAFVGNSLVVMYSDSGNVNDAVSVFIKI-FKKSIVSWNSIIVGCAQHG 406

Query: 356 RLDLAE--FAAMNLFNLNP 372
           R   A   F  M   N  P
Sbjct: 407 RGKWAFVIFGQMIRLNKEP 425


>gi|125551253|gb|EAY96962.1| hypothetical protein OsI_18881 [Oryza sativa Indica Group]
          Length = 822

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 210/537 (39%), Positives = 313/537 (58%), Gaps = 41/537 (7%)

Query: 45  LSCILLN---SDDVVAAFDF----FQRLPIKDTASWNTMISGFVQ-----KKNMAKARDL 92
           +SC L++     ++  A D+    F+R+P  D  SW  +ISG+VQ      K MA   ++
Sbjct: 291 VSCGLVDMYAKSNIGQAMDYANKVFERMPKNDVISWTALISGYVQSGVQENKVMALFGEM 350

Query: 93  FLAMPEKNSVSWSAMISGYIECGQLDKA----VELFKVAPVKSVVAWTAMISGYMKFGYV 148
                + N +++S+++         D        + K     +     A++S Y + G +
Sbjct: 351 LNESIKPNHITYSSILKSCASISDHDSGRQVHAHVIKSNQASAHTVGNALVSMYAESGCM 410

Query: 149 E------NSWAEDGL--------------KLLRMMIGLGIRPNASSLSSVLLGCSHLSSL 188
           E      N   E  +              +++RM +G+    ++S+ +S++   + +  L
Sbjct: 411 EEARRVFNQLYERSMIPCITEGRDFPLDHRIVRMDVGI----SSSTFASLISAAASVGML 466

Query: 189 QLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGY 248
             G+Q+H +  K+    D      L+SMY +CG LEDAC+ F E++ ++V++W +MISG 
Sbjct: 467 TKGQQLHAMSLKAGFGSDRFVSNSLVSMYSRCGYLEDACRSFNELKDRNVISWTSMISGL 526

Query: 249 AQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK 308
           A+HG  E+AL LF  M   G+KP+ +T++A+L AC+H GLV  G +YF SM  D+G+  +
Sbjct: 527 AKHGYAERALSLFHDMILTGVKPNDVTYIAVLSACSHVGLVREGKEYFRSMQRDHGLIPR 586

Query: 309 PDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLF 368
            +HY CMVDLL R+G + EA++ I +MP K    ++ TLL ACR H  +++ E  A N+ 
Sbjct: 587 MEHYACMVDLLARSGIVKEALEFINEMPLKADALVWKTLLGACRSHDNIEVGEITAKNVV 646

Query: 369 NLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSG 428
            L P + A  YV L+N+YA    WD+VARIR +M++NN+ K  G SW+EV    HEFR+G
Sbjct: 647 ELEPRDPAP-YVLLSNLYADAGLWDEVARIRSAMRDNNLNKETGLSWMEVENTTHEFRAG 705

Query: 429 DRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLI 488
           D  HP    I+ KL  L +++K  GYVPD    LH + +E+KEQ LL HSEK+A+AFGLI
Sbjct: 706 DTSHPRAQDIYGKLDTLVRQIKGMGYVPDTSIVLHDMSDELKEQYLLQHSEKIAVAFGLI 765

Query: 489 KVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
                 PIR+FKNLRVC DCH A KY+S   +REII+RD+ RFH  KDG CSCG+YW
Sbjct: 766 TTSAPKPIRIFKNLRVCADCHSAIKYMSKATRREIILRDSNRFHRMKDGECSCGEYW 822



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 66/230 (28%), Positives = 110/230 (47%), Gaps = 40/230 (17%)

Query: 69  DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAP 128
           D A  + +I    +  ++A AR +F  + EK  V W+ +IS Y++    ++AVELF    
Sbjct: 187 DVAVGSALIDMLARNGDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVELF---- 242

Query: 129 VKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSL 188
                             ++E+                G  P+  ++SS++  C+ L S+
Sbjct: 243 ----------------LDFLED----------------GFEPDRYTMSSMISACTELGSV 270

Query: 189 QLGKQVHQLVFKSPLCKDTTALTPLISMYCKCG---DLEDACKLFLEIQRKDVVTWNAMI 245
           +LG Q+H L  +  L  D      L+ MY K      ++ A K+F  + + DV++W A+I
Sbjct: 271 RLGLQLHSLALRMGLASDACVSCGLVDMYAKSNIGQAMDYANKVFERMPKNDVISWTALI 330

Query: 246 SGYAQHGKGE-KALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ 294
           SGY Q G  E K + LF +M +E +KP+ IT+ ++L +C      D G Q
Sbjct: 331 SGYVQSGVQENKVMALFGEMLNESIKPNHITYSSILKSCASISDHDSGRQ 380



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 75/248 (30%), Positives = 124/248 (50%), Gaps = 13/248 (5%)

Query: 98  EKNSVSWSAMISGYIECGQLDKAVELFK-VAPVKSVVAWTAMISGYMKFGYVENSWAEDG 156
           ++++V  +++++ Y  CG +  A  +F  +  ++ +V+WTAM S   + G      AE G
Sbjct: 81  DRDAVVANSLLTLYSRCGAVASARNVFDGMRGLRDIVSWTAMASCLARNG------AERG 134

Query: 157 -LKLLRMMIGLGIRPNASSLSSVLLGC-SHLSSLQLGKQVHQLVFKSPL-CKDTTALTPL 213
            L L+  M+  G+ PNA +L +    C  H     +G  V  LV K  L   D    + L
Sbjct: 135 SLLLIGEMLESGLLPNAYTLCAAAHACFPHELYCLVGGVVLGLVHKMGLWGTDVAVGSAL 194

Query: 214 ISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDS 273
           I M  + GDL  A K+F  +  K VV W  +IS Y Q    E+A+ LF    ++G +PD 
Sbjct: 195 IDMLARNGDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVELFLDFLEDGFEPDR 254

Query: 274 ITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIK 333
            T  +++ AC   G V LG+Q   S+    G+A+       +VD+  ++  + +A+D   
Sbjct: 255 YTMSSMISACTELGSVRLGLQ-LHSLALRMGLASDACVSCGLVDMYAKS-NIGQAMDYAN 312

Query: 334 KMPFKPQP 341
           K+ F+  P
Sbjct: 313 KV-FERMP 319


>gi|357117655|ref|XP_003560579.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Brachypodium distachyon]
          Length = 614

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 212/545 (38%), Positives = 316/545 (57%), Gaps = 32/545 (5%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  +  V+W ++++G++ Q G+  +A ELF ++ +    +    L+ +L +         
Sbjct: 102 MPERNVVSWTAMISGYS-QSGRHAEALELFIRMLRAGCKANEFTLATVLTSC-------- 152

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
                P+  +      +   V K N            E +    S+++  Y + G + +A
Sbjct: 153 -----PVHQSIQQVEQVHSLVVKTNF-----------ESHMFVGSSLLDMYGKSGNIQEA 196

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLL 180
            ++F + P +  V+ TA+ISGY + G       ++ L L R +   G++ N  + +++L 
Sbjct: 197 RKVFDMLPERDTVSCTAIISGYAQLGL-----DDEALDLFRQLYSSGMQCNYVTFTTLLT 251

Query: 181 GCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVT 240
             S L+SL  GKQVH L+ +  L         LI MY KCG L  + ++F  + ++  ++
Sbjct: 252 SLSGLASLNYGKQVHGLILRKELPFFIVLQNSLIDMYSKCGKLLYSRRVFDNMPQRSAIS 311

Query: 241 WNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV 300
           WNAM+ GY +HG G++ ++LF  M +E +KPDS+T +A+L  C+H GLVD G+  FD +V
Sbjct: 312 WNAMLMGYGRHGIGQEVVQLFRTMTEE-VKPDSVTLLAVLSGCSHGGLVDEGLDIFDLIV 370

Query: 301 NDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLA 360
            +        HY C++DLLGR+G+L +A+DLI+ MPF+P PAI+G+LL ACRVH  + + 
Sbjct: 371 KEQNAVIHIGHYGCVIDLLGRSGQLQKALDLIEHMPFEPTPAIWGSLLGACRVHINVSVG 430

Query: 361 EFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGT 420
           E  A  L ++ P NA G YV L+NIYAA   W DV R+R  M EN V K P  SWI +  
Sbjct: 431 EVVAQKLLDMEPGNA-GNYVILSNIYAAAGMWKDVFRVRKLMLENTVTKEPAKSWIILDK 489

Query: 421 VVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEK 480
           V+H F S +R HP    I+ K+KE+   +K AG+VPDL   LH V +E KE++LL HSEK
Sbjct: 490 VIHTFHSSERFHPRKKDINAKIKEVYVDVKAAGFVPDLSCVLHDVDDEQKERMLLGHSEK 549

Query: 481 LAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCS 540
           LAI FGL+  P G  I+V KNLR+C DCH   K++S +  REI +RD  RFH  KDG C+
Sbjct: 550 LAITFGLMNTPPGLTIQVMKNLRICVDCHNFAKFVSKVYGREISLRDKNRFHLLKDGACT 609

Query: 541 CGDYW 545
           CGDYW
Sbjct: 610 CGDYW 614



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 77/271 (28%), Positives = 138/271 (50%), Gaps = 16/271 (5%)

Query: 73  WNTMISGFVQKKNMAKARDLFLAMPEKNSVS----WSAMISGYIECGQLDKAVELFKVAP 128
           ++  I+  V+++ + + R +   M +          + +I  Y+ CG LD A  +    P
Sbjct: 44  YDAAITACVERQALGEGRQVHAHMVKARYRPPVYLATRLIILYVRCGALDDARNVLDGMP 103

Query: 129 VKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSL 188
            ++VV+WTAMISGY + G        + L+L   M+  G + N  +L++VL  C    S+
Sbjct: 104 ERNVVSWTAMISGYSQSGR-----HAEALELFIRMLRAGCKANEFTLATVLTSCPVHQSI 158

Query: 189 QLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGY 248
           Q  +QVH LV K+         + L+ MY K G++++A K+F  +  +D V+  A+ISGY
Sbjct: 159 QQVEQVHSLVVKTNFESHMFVGSSLLDMYGKSGNIQEARKVFDMLPERDTVSCTAIISGY 218

Query: 249 AQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVND---YGI 305
           AQ G  ++AL LF ++   GM+ + +TF  LL + +    ++ G Q    ++     + I
Sbjct: 219 AQLGLDDEALDLFRQLYSSGMQCNYVTFTTLLTSLSGLASLNYGKQVHGLILRKELPFFI 278

Query: 306 AAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 336
             +      ++D+  + GKL+ +  +   MP
Sbjct: 279 VLQ----NSLIDMYSKCGKLLYSRRVFDNMP 305


>gi|255545098|ref|XP_002513610.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223547518|gb|EEF49013.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 660

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 214/495 (43%), Positives = 300/495 (60%), Gaps = 15/495 (3%)

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMISGYIE 113
           A      +P +D  SWN+M+S + Q      A +L   M     + N  + ++++     
Sbjct: 174 AQQVLDEIPCRDVVSWNSMVSVYAQNGRFNDALELCREMEALNLKPNDCTMASLLPAVTN 233

Query: 114 CGQLDKAV---ELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRP 170
               D  +   E+F     KSV++W  MI+ Y     V NS  ++ + L   M   G+ P
Sbjct: 234 TTS-DNVLYVKEMFLKLTKKSVISWNVMIAMY-----VNNSMPKEAVVLYSQMEANGVEP 287

Query: 171 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 230
           +  S+ SVL     LS+L LG++VH+   +  L  +      LI MY KCG L DA  +F
Sbjct: 288 DVVSIVSVLPAYGDLSALSLGRRVHKFAERKKLLPNLLLENALIDMYAKCGCLRDARAVF 347

Query: 231 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVD 290
            ++Q +DVV+W ++IS Y + G+G  A+ +F +M++ G+ PDSI FV++L AC+HAGL+D
Sbjct: 348 NQMQFRDVVSWTSIISAYGKCGQGRDAVAVFAEMRNSGLNPDSIAFVSVLAACSHAGLLD 407

Query: 291 LGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSA 350
            G  YF+ M  + GI  K +H+ C+VDLLGRAGK+ EA   I++MP +P   ++G LLSA
Sbjct: 408 DGRYYFNLMA-ECGITPKLEHFACVVDLLGRAGKIDEAYGFIRQMPLEPDERVWGPLLSA 466

Query: 351 CRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKM 410
           CRV+  +++   AA  L  LNP ++ G YV L+NIYA   +W DVA IR  M+   + K+
Sbjct: 467 CRVYSNMNIGILAADKLLMLNPEHS-GYYVLLSNIYAKAGRWADVAAIRSIMERKGIKKL 525

Query: 411 PGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVK 470
           PG S +E+   VH F +GD  HP+   I+E+L  L  +MK  GY+P+ + ALH V EE K
Sbjct: 526 PGISNVELNDGVHTFLAGDHSHPQSKKIYEELDVLVGKMKELGYMPETDSALHDVEEEDK 585

Query: 471 EQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTR 530
           E  L  HSEKLA+AF +I    GTPIRV KNLRVCGDCH A K IS I +REII+RDT R
Sbjct: 586 EYHLAVHSEKLAVAFAIINTKPGTPIRVTKNLRVCGDCHVAAKLISKIAEREIIIRDTHR 645

Query: 531 FHHFKDGTCSCGDYW 545
           FHHF++G CSCGDYW
Sbjct: 646 FHHFQEGCCSCGDYW 660



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 60/172 (34%), Positives = 88/172 (51%), Gaps = 5/172 (2%)

Query: 111 YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRP 170
           Y  CG+   A  +F     K+VV +  MI  Y     V N   +D L + + M   G  P
Sbjct: 64  YAACGEPGLARHIFDEITDKNVVFFNVMIRSY-----VNNHLYKDALLVYKTMYTQGFVP 118

Query: 171 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 230
           +  +   VL   S   SL +G Q+H  V K  L  +      LI+MY KC  L++A ++ 
Sbjct: 119 DMYTYPCVLKASSRSDSLWVGLQIHGAVLKIGLDLNLYVGNGLIAMYGKCKSLKEAQQVL 178

Query: 231 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA 282
            EI  +DVV+WN+M+S YAQ+G+   AL L  +M+   +KP+  T  +LL A
Sbjct: 179 DEIPCRDVVSWNSMVSVYAQNGRFNDALELCREMEALNLKPNDCTMASLLPA 230



 Score = 47.8 bits (112), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 39/159 (24%), Positives = 72/159 (45%), Gaps = 13/159 (8%)

Query: 213 LISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPD 272
           L+ +Y  CG+   A  +F EI  K+VV +N MI  Y  +   + AL ++  M  +G  PD
Sbjct: 60  LMRVYAACGEPGLARHIFDEITDKNVVFFNVMIRSYVNNHLYKDALLVYKTMYTQGFVPD 119

Query: 273 SITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLI 332
             T+  +L A + +  + +G+Q   +++   G+         ++ + G+   L EA  ++
Sbjct: 120 MYTYPCVLKASSRSDSLWVGLQIHGAVLK-IGLDLNLYVGNGLIAMYGKCKSLKEAQQVL 178

Query: 333 KKMPFK------------PQPAIFGTLLSACRVHKRLDL 359
            ++P +             Q   F   L  CR  + L+L
Sbjct: 179 DEIPCRDVVSWNSMVSVYAQNGRFNDALELCREMEALNL 217


>gi|15222566|ref|NP_173907.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75172213|sp|Q9FRI5.1|PPR57_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g25360
 gi|11067273|gb|AAG28801.1|AC079374_4 hypothetical protein [Arabidopsis thaliana]
 gi|332192491|gb|AEE30612.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 790

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 215/559 (38%), Positives = 325/559 (58%), Gaps = 40/559 (7%)

Query: 7   VNWNSVLAGFAKQRGKLKDAQEL----------FDKIPQPDVV---------SYNIMLSC 47
           V +N++++G+   RG  ++A E+           D+   P V+              +  
Sbjct: 252 VAYNAMISGYV-NRGFYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQVHA 310

Query: 48  ILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAM 107
            +L  +D    FD             N+++S + +     +AR +F  MP K+ VSW+A+
Sbjct: 311 YVLRREDFSFHFD-------------NSLVSLYYKCGKFDEARAIFEKMPAKDLVSWNAL 357

Query: 108 ISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLG 167
           +SGY+  G + +A  +FK    K++++W  MISG       EN + E+GLKL   M   G
Sbjct: 358 LSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGL-----AENGFGEEGLKLFSCMKREG 412

Query: 168 IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC 227
             P   + S  +  C+ L +   G+Q H  + K       +A   LI+MY KCG +E+A 
Sbjct: 413 FEPCDYAFSGAIKSCAVLGAYCNGQQYHAQLLKIGFDSSLSAGNALITMYAKCGVVEEAR 472

Query: 228 KLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG 287
           ++F  +   D V+WNA+I+   QHG G +A+ ++++M  +G++PD IT + +L AC+HAG
Sbjct: 473 QVFRTMPCLDSVSWNALIAALGQHGHGAEAVDVYEEMLKKGIRPDRITLLTVLTACSHAG 532

Query: 288 LVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTL 347
           LVD G +YFDSM   Y I    DHY  ++DLL R+GK  +A  +I+ +PFKP   I+  L
Sbjct: 533 LVDQGRKYFDSMETVYRIPPGADHYARLIDLLCRSGKFSDAESVIESLPFKPTAEIWEAL 592

Query: 348 LSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNV 407
           LS CRVH  ++L   AA  LF L P +  G Y+ L+N++AA  +W++VAR+R  M++  V
Sbjct: 593 LSGCRVHGNMELGIIAADKLFGLIPEH-DGTYMLLSNMHAATGQWEEVARVRKLMRDRGV 651

Query: 408 VKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGE 467
            K    SWIE+ T VH F   D  HPE  +++  L++L K M+  GYVPD  F LH V  
Sbjct: 652 KKEVACSWIEMETQVHTFLVDDTSHPEAEAVYIYLQDLGKEMRRLGYVPDTSFVLHDVES 711

Query: 468 EV-KEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVR 526
           +  KE +L  HSEK+A+AFGL+K+P GT IR+FKNLR CGDCH   +++S + +R+II+R
Sbjct: 712 DGHKEDMLTTHSEKIAVAFGLMKLPPGTTIRIFKNLRTCGDCHNFFRFLSWVVQRDIILR 771

Query: 527 DTTRFHHFKDGTCSCGDYW 545
           D  RFHHF++G CSCG++W
Sbjct: 772 DRKRFHHFRNGECSCGNFW 790



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 105/421 (24%), Positives = 175/421 (41%), Gaps = 111/421 (26%)

Query: 22  KLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPI--KDTASWNTMISG 79
           +L  A++LFD+I +PD ++   M+S     S D+  A   F++ P+  +DT  +N MI+G
Sbjct: 64  ELNYARQLFDEISEPDKIARTTMVSG-YCASGDITLARGVFEKAPVCMRDTVMYNAMITG 122

Query: 80  FVQKKNMAKARDLFLAMP------------------------EKNSVSW----------- 104
           F    +   A +LF  M                         EK  V +           
Sbjct: 123 FSHNNDGYSAINLFCKMKHEGFKPDNFTFASVLAGLALVADDEKQCVQFHAAALKSGAGY 182

Query: 105 -----SAMISGYIECGQ----LDKAVELFKVAPVKSVVAWTAMISGYMK----------- 144
                +A++S Y +C      L  A ++F     K   +WT M++GY+K           
Sbjct: 183 ITSVSNALVSVYSKCASSPSLLHSARKVFDEILEKDERSWTTMMTGYVKNGYFDLGEELL 242

Query: 145 ----------------FGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSL 188
                            GYV   + ++ L+++R M+  GI  +  +  SV+  C+    L
Sbjct: 243 EGMDDNMKLVAYNAMISGYVNRGFYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLL 302

Query: 189 QLGKQVHQLVFKSPLCKDTTAL--TPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMIS 246
           QLGKQVH  V +    +D +      L+S+Y KCG  ++A  +F ++  KD+V+WNA++S
Sbjct: 303 QLGKQVHAYVLRR---EDFSFHFDNSLVSLYYKCGKFDEARAIFEKMPAKDLVSWNALLS 359

Query: 247 GY-------------------------------AQHGKGEKALRLFDKMKDEGMKPDSIT 275
           GY                               A++G GE+ L+LF  MK EG +P    
Sbjct: 360 GYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYA 419

Query: 276 FVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335
           F   + +C   G    G QY   ++   G  +       ++ +  + G + EA  + + M
Sbjct: 420 FSGAIKSCAVLGAYCNGQQYHAQLLK-IGFDSSLSAGNALITMYAKCGVVEEARQVFRTM 478

Query: 336 P 336
           P
Sbjct: 479 P 479



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 83/304 (27%), Positives = 134/304 (44%), Gaps = 46/304 (15%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPV--KS 131
           N +I  + +   +  AR LF  + E + ++ + M+SGY   G +  A  +F+ APV  + 
Sbjct: 53  NRLIDVYCKSSELNYARQLFDEISEPDKIARTTMVSGYCASGDITLARGVFEKAPVCMRD 112

Query: 132 VVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLG 191
            V + AMI+     G+  N+     + L   M   G +P+  + +SVL G + ++  +  
Sbjct: 113 TVMYNAMIT-----GFSHNNDGYSAINLFCKMKHEGFKPDNFTFASVLAGLALVADDEKQ 167

Query: 192 -KQVHQLVFKSPLCKDTTALTPLISMYCKCGD----LEDACKLFLEIQRKDVVTW----- 241
             Q H    KS     T+    L+S+Y KC      L  A K+F EI  KD  +W     
Sbjct: 168 CVQFHAAALKSGAGYITSVSNALVSVYSKCASSPSLLHSARKVFDEILEKDERSWTTMMT 227

Query: 242 ---------------------------NAMISGYAQHGKGEKALRLFDKMKDEGMKPDSI 274
                                      NAMISGY   G  ++AL +  +M   G++ D  
Sbjct: 228 GYVKNGYFDLGEELLEGMDDNMKLVAYNAMISGYVNRGFYQEALEMVRRMVSSGIELDEF 287

Query: 275 TFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKK 334
           T+ +++ AC  AGL+ LG Q    ++     +   D+   +V L  + GK  EA  + +K
Sbjct: 288 TYPSVIRACATAGLLQLGKQVHAYVLRREDFSFHFDN--SLVSLYYKCGKFDEARAIFEK 345

Query: 335 MPFK 338
           MP K
Sbjct: 346 MPAK 349



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/120 (33%), Positives = 65/120 (54%), Gaps = 6/120 (5%)

Query: 163 MIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGD 222
           +I  G +P A  L+ ++      S L   +Q+   + +     D  A T ++S YC  GD
Sbjct: 40  IITFGFQPRAHILNRLIDVYCKSSELNYARQLFDEISEP----DKIARTTMVSGYCASGD 95

Query: 223 LEDACKLFLE--IQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 280
           +  A  +F +  +  +D V +NAMI+G++ +  G  A+ LF KMK EG KPD+ TF ++L
Sbjct: 96  ITLARGVFEKAPVCMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDNFTFASVL 155


>gi|449444429|ref|XP_004139977.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Cucumis sativus]
 gi|449475689|ref|XP_004154524.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Cucumis sativus]
          Length = 586

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 224/532 (42%), Positives = 311/532 (58%), Gaps = 17/532 (3%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G L +A+ LFD++P  +VVS+  M+S    NS+    A DF   L +++    N      
Sbjct: 65  GLLDEARNLFDEMPDRNVVSWTTMISA-YSNSNLNHKALDFLI-LMLREGVRPNMYTYSS 122

Query: 81  VQKK-----NMAKARDLFLAMP-EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVA 134
           V +      N+ +     L +  E +    SA+I  Y + G+   A+ +F       +V 
Sbjct: 123 VLRACDGLLNLRQLHGSILKVGLESDVFVRSALIDTYSKLGEQHDALNVFNEMITGDLVV 182

Query: 135 WTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQV 194
           W ++I G+      +NS  ++ L L + M       + S+L+SVL  C+ L+ L+LG+QV
Sbjct: 183 WNSIIGGF-----AQNSDGDETLHLYKRMKRADFVADQSTLTSVLRACTGLALLELGRQV 237

Query: 195 HQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI-QRKDVVTWNAMISGYAQHGK 253
           H  V K    +D      L+ MYCKCG LEDA  LF  +   KDV++W+ MI+G AQ+G 
Sbjct: 238 HVHVLKYD--QDLILNNALLDMYCKCGSLEDANLLFTRMMTEKDVISWSTMIAGLAQNGF 295

Query: 254 GEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYT 313
              AL+LF+ MK +G KP+ IT + +L AC+HAGLV+ G  YF SM   +GI    +HY 
Sbjct: 296 SADALKLFEAMKSKGPKPNYITILGVLFACSHAGLVNDGWYYFQSMKEHFGIDPGREHYG 355

Query: 314 CMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPA 373
           C++DLLGRAGKL EAV LI +M  +P    +  LL ACRVHK +DLA +AA  +  L+PA
Sbjct: 356 CIIDLLGRAGKLDEAVKLIHEMNHEPDAVTWRILLGACRVHKNVDLAIYAAKEILKLDPA 415

Query: 374 NAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHP 433
           +A G Y+ L+NIYA  +KW+DVA +R  M+   V K PG SWIEV   VH F  GD  HP
Sbjct: 416 DA-GTYILLSNIYANSQKWEDVAEVRRKMRTRGVKKDPGCSWIEVSKQVHAFILGDNSHP 474

Query: 434 ELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLG 493
            +  I  +L +L +R+   GYVPD  F L  +  E  E  L +HSEKLAI FGL+ +P  
Sbjct: 475 RIEEIKRELSQLIQRLMRLGYVPDTNFVLQDLEGEQMEDSLQYHSEKLAIVFGLMSLPNQ 534

Query: 494 TPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
             I + KNLR+CGDCH   K +S +E R I++RD  R+HHF+ G CSCGDYW
Sbjct: 535 KTIHIRKNLRICGDCHIFAKLVSQLENRVIVIRDPIRYHHFRGGVCSCGDYW 586



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 88/168 (52%), Gaps = 4/168 (2%)

Query: 168 IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC 227
           +  +A + S ++  C    ++Q  + VH+ VF +     T  +  LI+MY K G L++A 
Sbjct: 12  LSADAITYSELIKCCLVRGAVQQARLVHEHVFSNGYEPKTFLINTLINMYVKFGLLDEAR 71

Query: 228 KLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG 287
            LF E+  ++VV+W  MIS Y+      KAL     M  EG++P+  T+ ++L AC+  G
Sbjct: 72  NLFDEMPDRNVVSWTTMISAYSNSNLNHKALDFLILMLREGVRPNMYTYSSVLRACD--G 129

Query: 288 LVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335
           L++L  +     +   G+ +     + ++D   + G+  +A+++  +M
Sbjct: 130 LLNL--RQLHGSILKVGLESDVFVRSALIDTYSKLGEQHDALNVFNEM 175



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/256 (22%), Positives = 115/256 (44%), Gaps = 27/256 (10%)

Query: 11  SVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDT 70
           S L     + G+  DA  +F+++   D+V +N ++     NSD        ++R+   D 
Sbjct: 153 SALIDTYSKLGEQHDALNVFNEMITGDLVVWNSIIGGFAQNSDG-DETLHLYKRMKRADF 211

Query: 71  ASWNTMISGFVQK------KNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELF 124
            +  + ++  ++         + +   + +   +++ +  +A++  Y +CG L+ A  LF
Sbjct: 212 VADQSTLTSVLRACTGLALLELGRQVHVHVLKYDQDLILNNALLDMYCKCGSLEDANLLF 271

Query: 125 -KVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCS 183
            ++   K V++W+ MI+     G  +N ++ D LKL   M   G +PN  ++  VL  CS
Sbjct: 272 TRMMTEKDVISWSTMIA-----GLAQNGFSADALKLFEAMKSKGPKPNYITILGVLFACS 326

Query: 184 HLSSLQLGKQVHQLVFKSPLCKDTTALTP-------LISMYCKCGDLEDACKLFLEIQRK 236
           H   +  G    Q +      K+   + P       +I +  + G L++A KL  E+  +
Sbjct: 327 HAGLVNDGWYYFQSM------KEHFGIDPGREHYGCIIDLLGRAGKLDEAVKLIHEMNHE 380

Query: 237 -DVVTWNAMISGYAQH 251
            D VTW  ++     H
Sbjct: 381 PDAVTWRILLGACRVH 396


>gi|302141697|emb|CBI18900.3| unnamed protein product [Vitis vinifera]
          Length = 637

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 210/535 (39%), Positives = 321/535 (60%), Gaps = 18/535 (3%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWN-----T 75
           G  +DAQ LFD++P  D+VS+N ++S  L     + A  + F R+  +     N     +
Sbjct: 111 GYDEDAQRLFDEMPNKDLVSWNSLMSG-LSGRGYLGACLNAFCRMRTESGRQPNEVTLLS 169

Query: 76  MISGFVQKKNMAKARDLF-----LAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVK 130
           ++S       + + + L      L M  K  V  +++I+ Y + G LD A +LF+  PV+
Sbjct: 170 VVSACADMGALDEGKSLHGVVVKLGMSGKAKVV-NSLINMYGKLGFLDAASQLFEEMPVR 228

Query: 131 SVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQL 190
           S+V+W +M+  +   GY     AE G+ L  +M   GI P+ +++ ++L  C+     + 
Sbjct: 229 SLVSWNSMVVIHNHNGY-----AEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQ 283

Query: 191 GKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQ 250
            + +H  + +     D    T L+++Y K G L  +  +F EI+ +D + W AM++GYA 
Sbjct: 284 AESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEIKDRDRIAWTAMLAGYAV 343

Query: 251 HGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPD 310
           H  G +A++LFD M  EG++ D +TF  LL AC+H+GLV+ G +YF+ M   Y +  + D
Sbjct: 344 HACGREAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLD 403

Query: 311 HYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNL 370
           HY+CMVDLLGR+G+L +A +LIK MP +P   ++G LL ACRV+  ++L +  A  L +L
Sbjct: 404 HYSCMVDLLGRSGRLEDAYELIKSMPMEPSSGVWGALLGACRVYGNVELGKEVAEQLLSL 463

Query: 371 NPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDR 430
           +P++    Y+ L+NIY+A   W D +++R  MKE  + + PG S+IE G  +H F  GD+
Sbjct: 464 DPSDHRN-YIMLSNIYSAAGLWRDASKVRALMKERRLTRNPGCSFIEHGNKIHRFVVGDQ 522

Query: 431 VHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKV 490
           +HP    IH KL+EL ++++ AG  P  EF LH + EEVK  ++  HSEKLAIAFGL+  
Sbjct: 523 LHPRSDEIHTKLEELIRKIREAGCAPKTEFVLHDIDEEVKVDMINKHSEKLAIAFGLLVT 582

Query: 491 PLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
             G P+ + KNLR+CGDCH   K+ S +EKR II+RD+ RFHHF DG CSC DYW
Sbjct: 583 GSGVPLIITKNLRICGDCHSTAKFASLLEKRTIIIRDSKRFHHFADGLCSCRDYW 637



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 74/248 (29%), Positives = 127/248 (51%), Gaps = 6/248 (2%)

Query: 107 MISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGL 166
           ++S Y + G  + A  LF   P K +V+W +++SG    GY+            RM    
Sbjct: 103 LVSMYFKLGYDEDAQRLFDEMPNKDLVSWNSLMSGLSGRGYLGACLN----AFCRMRTES 158

Query: 167 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 226
           G +PN  +L SV+  C+ + +L  GK +H +V K  +      +  LI+MY K G L+ A
Sbjct: 159 GRQPNEVTLLSVVSACADMGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAA 218

Query: 227 CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHA 286
            +LF E+  + +V+WN+M+  +  +G  EK + LF+ MK  G+ PD  T VALL AC   
Sbjct: 219 SQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDT 278

Query: 287 GLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGT 346
           GL     +   + ++  G  A     T +++L  + G+L  + D+ +++  + + A +  
Sbjct: 279 GL-GRQAESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEIKDRDRIA-WTA 336

Query: 347 LLSACRVH 354
           +L+   VH
Sbjct: 337 MLAGYAVH 344



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 77/299 (25%), Positives = 139/299 (46%), Gaps = 15/299 (5%)

Query: 173 SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLE 232
           S + S++   S  +S+     +H  V KS    D      L+SMY K G  EDA +LF E
Sbjct: 63  SIVQSLVFAISSCTSVSYCSAIHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDE 122

Query: 233 IQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE-GMKPDSITFVALLLACNHAGLVDL 291
           +  KD+V+WN+++SG +  G     L  F +M+ E G +P+ +T ++++ AC   G +D 
Sbjct: 123 MPNKDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACADMGALDE 182

Query: 292 GIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSAC 351
           G +    +V   G++ K      ++++ G+ G L  A  L ++MP +       +  S  
Sbjct: 183 G-KSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRS----LVSWNSMV 237

Query: 352 RVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMP 411
            +H     AE   M+LFNL     AG     A + A ++   D    R +   +  +   
Sbjct: 238 VIHNHNGYAE-KGMDLFNL--MKRAGINPDQATMVALLRACTDTGLGRQAESIHAYIHRC 294

Query: 412 GYS--WIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEE 468
           G++   I    +++ +    R++       +  +E++ R ++A       +A+HA G E
Sbjct: 295 GFNADIIIATALLNLYAKLGRLNAS----EDIFEEIKDRDRIAWTAMLAGYAVHACGRE 349


>gi|356557757|ref|XP_003547177.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
            chloroplastic-like [Glycine max]
          Length = 1227

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 217/551 (39%), Positives = 315/551 (57%), Gaps = 24/551 (4%)

Query: 7    VNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNS--DDVVAAFDFFQR 64
            V +N+ L     + G L DA + F+K+ Q  VVS+  +++  +     DD +  F   + 
Sbjct: 689  VMFNNTLLDMYSKCGNLNDAIQAFEKMGQKTVVSWTSLIAAYVREGLYDDAIRLFYEMES 748

Query: 65   LPIK-DTASWNTMISGFVQKKNMAKARDLF---------LAMPEKNSVSWSAMISGYIEC 114
              +  D  S  +++       ++ K RD+          L +P  N     A++  Y +C
Sbjct: 749  KGVSPDVYSMTSVLHACACGNSLDKGRDVHNYIRKNNMALCLPVSN-----ALMDMYAKC 803

Query: 115  GQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASS 174
            G +++A  +F   PVK +V+W  MI GY K     NS   + LKL   M     RP+  +
Sbjct: 804  GSMEEAYLVFSQIPVKDIVSWNTMIGGYSK-----NSLPNEALKLFAEMQKES-RPDGIT 857

Query: 175  LSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ 234
            ++ +L  C  L++L++G+ +H  + ++    +      LI MY KCG L  A  LF  I 
Sbjct: 858  MACLLPACGSLAALEIGRGIHGCILRNGYSSELHVANALIDMYVKCGSLVHARLLFDMIP 917

Query: 235  RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ 294
             KD++TW  MISG   HG G +A+  F KM+  G+KPD ITF ++L AC+H+GL++ G  
Sbjct: 918  EKDLITWTVMISGCGMHGLGNEAIATFQKMRIAGIKPDEITFTSILYACSHSGLLNEGWG 977

Query: 295  YFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVH 354
            +F+SM+++  +  K +HY CMVDLL R G L +A +LI+ MP KP   I+G LL  CR+H
Sbjct: 978  FFNSMISECNMEPKLEHYACMVDLLARTGNLSKAYNLIETMPIKPDATIWGALLCGCRIH 1037

Query: 355  KRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYS 414
              ++LAE  A ++F L P N AG YV LANIYA  +KW++V ++R  + +  + K PG S
Sbjct: 1038 HDVELAEKVAEHVFELEPDN-AGYYVLLANIYAEAEKWEEVKKLRERIGKRGLKKSPGCS 1096

Query: 415  WIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLL 474
            WIEV      F S D  HP+  SI   L  L  +MK  G+ P + +AL   G+  KE  L
Sbjct: 1097 WIEVQGKFTTFVSADTAHPQAKSIFSLLNNLRIKMKNEGHSPKMRYALINAGDMEKEVAL 1156

Query: 475  LFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHF 534
              HSEKLA+AFG++ +P G  IRV KNLRVC DCH   K++S   +REII+RD+ RFHHF
Sbjct: 1157 CGHSEKLAMAFGILNLPSGRTIRVAKNLRVCDDCHEMAKFMSKTTRREIILRDSNRFHHF 1216

Query: 535  KDGTCSCGDYW 545
            KDG CSC D+W
Sbjct: 1217 KDGFCSCRDFW 1227



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 82/327 (25%), Positives = 166/327 (50%), Gaps = 16/327 (4%)

Query: 21  GKLKDAQELFDKIPQPD-VVSYNIMLSCILLNSD--DVVAAFDFFQRLPIK-DTASWNTM 76
           G L++ + +FD I   + V  +N+M+S      D  + +  F   Q+L I  ++ +++ +
Sbjct: 500 GALREGRRIFDHILSDNKVFLWNLMMSEYAKIGDYRESIYLFKKMQKLGITGNSYTFSCI 559

Query: 77  ISGFVQKKNMAKARDLF-----LAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKS 131
           +  F     + + + +      L     N+V  +++I+ Y + G++D A +LF     + 
Sbjct: 560 LKCFATLGRVGECKRIHGCVYKLGFGSYNTVV-NSLIATYFKSGEVDSAHKLFDELGDRD 618

Query: 132 VVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLG 191
           VV+W +MISG      V N ++   L+    M+ L +  + ++L + +  C+++ SL LG
Sbjct: 619 VVSWNSMISGC-----VMNGFSHSALEFFVQMLILRVGVDLATLVNSVAACANVGSLSLG 673

Query: 192 KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQH 251
           + +H    K+   ++      L+ MY KCG+L DA + F ++ +K VV+W ++I+ Y + 
Sbjct: 674 RALHGQGVKACFSREVMFNNTLLDMYSKCGNLNDAIQAFEKMGQKTVVSWTSLIAAYVRE 733

Query: 252 GKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDH 311
           G  + A+RLF +M+ +G+ PD  +  ++L AC     +D G    + +  +      P  
Sbjct: 734 GLYDDAIRLFYEMESKGVSPDVYSMTSVLHACACGNSLDKGRDVHNYIRKNNMALCLPVS 793

Query: 312 YTCMVDLLGRAGKLVEAVDLIKKMPFK 338
              ++D+  + G + EA  +  ++P K
Sbjct: 794 -NALMDMYAKCGSMEEAYLVFSQIPVK 819



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 77/159 (48%), Gaps = 14/159 (8%)

Query: 155 DGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLI 214
           + ++LLRM     +  NA   SS+L  C+    LQ GK VH ++  + +  +      L+
Sbjct: 436 NAVELLRMSQKSELDLNA--YSSILQLCAEHKCLQEGKMVHSVISSNGIPIEGVLGAKLV 493

Query: 215 SMYCKCGDLEDACKLFLEIQRKD-VVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDS 273
            MY  CG L +  ++F  I   + V  WN M+S YA+ G   +++ LF KM+  G+  +S
Sbjct: 494 FMYVSCGALREGRRIFDHILSDNKVFLWNLMMSEYAKIGDYRESIYLFKKMQKLGITGNS 553

Query: 274 ITFVALLLA---------CN--HAGLVDLGIQYFDSMVN 301
            TF  +L           C   H  +  LG   ++++VN
Sbjct: 554 YTFSCILKCFATLGRVGECKRIHGCVYKLGFGSYNTVVN 592


>gi|359479914|ref|XP_002268148.2| PREDICTED: uncharacterized protein LOC100250295 [Vitis vinifera]
          Length = 1130

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 207/476 (43%), Positives = 289/476 (60%), Gaps = 10/476 (2%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVV 133
            ++IS +    N+  AR +F  +P+ +  SW+++I+   + G +D A  LF V P ++V+
Sbjct: 103 TSLISMYSSCGNLGFARQVFDEIPQPDLPSWNSIINANFQAGLVDMARNLFAVMPERNVI 162

Query: 134 AWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGI---RPNASSLSSVLLGCSHLSSLQL 190
           +W+ MI+GY++ G  +     + L L R M  LG+   RPN  ++S VL  C  L +L+ 
Sbjct: 163 SWSCMINGYVRCGQYK-----EALALFREMQMLGVNDVRPNEFTMSGVLAACGRLGALEH 217

Query: 191 GKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI-QRKDVVTWNAMISGYA 249
           GK  H  + K  +  D    T LI MY KCG +E A  +F  +   KDV+ W+AMISG A
Sbjct: 218 GKWAHAYIDKCGMPVDVVLGTALIDMYAKCGSVEKATWVFSNLGPNKDVMAWSAMISGLA 277

Query: 250 QHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKP 309
            HG  E+ + LF KM ++G++P+++TF+A+  AC H GLV  G  Y   M  DY I    
Sbjct: 278 MHGLAEECVGLFSKMINQGVRPNAVTFLAVFCACVHGGLVSEGKDYLRRMTEDYSIIPTI 337

Query: 310 DHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFN 369
            HY CMVDL GRAG++ EA +++K MP +P   ++G LLS  R+H  ++  E A   L  
Sbjct: 338 QHYGCMVDLYGRAGRIKEAWNVVKSMPMEPDVLVWGALLSGSRMHGDIETCELALKKLIE 397

Query: 370 LNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGD 429
           L P N+ G YV L+N+YA   +W+DV  +R  M+   + K+PG S IEVG V+HEF  GD
Sbjct: 398 LEPTNS-GAYVLLSNVYAKRGRWEDVRHVRDLMETMGIKKVPGCSLIEVGGVLHEFFVGD 456

Query: 430 RVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIK 489
             HPE   IH  L+E+ +R+K+ GYV + +  L  + EE KE  L  HSEKLA+A+G +K
Sbjct: 457 DSHPETRQIHMMLEEILERLKVEGYVGNTKEVLLDLDEEGKELALSLHSEKLALAYGFLK 516

Query: 490 VPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
              GTPIR+ KNLR+C DCH A K IS +  REIIVRD  RFHHF  G CSC DYW
Sbjct: 517 TSPGTPIRIVKNLRICRDCHVAIKMISKVFDREIIVRDCNRFHHFTQGLCSCRDYW 572



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 75/280 (26%), Positives = 128/280 (45%), Gaps = 51/280 (18%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G L  A+++FD+IPQPD+ S+N +++     +  V  A + F  +P ++  SW+ MI+G+
Sbjct: 113 GNLGFARQVFDEIPQPDLPSWNSIINAN-FQAGLVDMARNLFAVMPERNVISWSCMINGY 171

Query: 81  VQKKNMAKARDLFLAM---------PEKNSVS----------------W----------- 104
           V+     +A  LF  M         P + ++S                W           
Sbjct: 172 VRCGQYKEALALFREMQMLGVNDVRPNEFTMSGVLAACGRLGALEHGKWAHAYIDKCGMP 231

Query: 105 ------SAMISGYIECGQLDKAVELF-KVAPVKSVVAWTAMISGYMKFGYVENSWAEDGL 157
                 +A+I  Y +CG ++KA  +F  + P K V+AW+AMISG    G      AE+ +
Sbjct: 232 VDVVLGTALIDMYAKCGSVEKATWVFSNLGPNKDVMAWSAMISGLAMHGL-----AEECV 286

Query: 158 KLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ-VHQLVFKSPLCKDTTALTPLISM 216
            L   MI  G+RPNA +  +V   C H   +  GK  + ++     +         ++ +
Sbjct: 287 GLFSKMINQGVRPNAVTFLAVFCACVHGGLVSEGKDYLRRMTEDYSIIPTIQHYGCMVDL 346

Query: 217 YCKCGDLEDACKLFLEI-QRKDVVTWNAMISGYAQHGKGE 255
           Y + G +++A  +   +    DV+ W A++SG   HG  E
Sbjct: 347 YGRAGRIKEAWNVVKSMPMEPDVLVWGALLSGSRMHGDIE 386



 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 56/261 (21%), Positives = 109/261 (41%), Gaps = 35/261 (13%)

Query: 128 PVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSS 187
           P      W  +I  +++            + +   M   G++P+  +   +L   +  S 
Sbjct: 20  PTLESFLWNTLIRAHVQARAQPTGPTHSPISIFVRMRFHGVQPDFHTFPFLLQSFASPSL 79

Query: 188 LQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKD---------- 237
           L LG+ VH  + +  L  D    T LISMY  CG+L  A ++F EI + D          
Sbjct: 80  LHLGRSVHAQILRFGLAIDPFVQTSLISMYSSCGNLGFARQVFDEIPQPDLPSWNSIINA 139

Query: 238 ---------------------VVTWNAMISGYAQHGKGEKALRLFDKMKDEG---MKPDS 273
                                V++W+ MI+GY + G+ ++AL LF +M+  G   ++P+ 
Sbjct: 140 NFQAGLVDMARNLFAVMPERNVISWSCMINGYVRCGQYKEALALFREMQMLGVNDVRPNE 199

Query: 274 ITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIK 333
            T   +L AC   G ++ G ++  + ++  G+       T ++D+  + G + +A  +  
Sbjct: 200 FTMSGVLAACGRLGALEHG-KWAHAYIDKCGMPVDVVLGTALIDMYAKCGSVEKATWVFS 258

Query: 334 KMPFKPQPAIFGTLLSACRVH 354
            +        +  ++S   +H
Sbjct: 259 NLGPNKDVMAWSAMISGLAMH 279


>gi|356546516|ref|XP_003541672.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 591

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 204/528 (38%), Positives = 316/528 (59%), Gaps = 15/528 (2%)

Query: 26  AQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK----DTASWNTMISGFV 81
           A  +F  I  P+V ++N ++      SD+   AF F++++ +     DT ++  ++    
Sbjct: 71  AYNVFTVIHNPNVFTWNTIIRG-YAESDNPSPAFLFYRQMVVSCVEPDTHTYPFLLKAIS 129

Query: 82  QKKNMAKARDLFLAMPEKNSVSW----SAMISGYIECGQLDKAVELFKVAPVKSVVAWTA 137
           +  N+ +   +          S     ++++  Y  CG  + A ++F++   + +VAW +
Sbjct: 130 KSLNVREGEAIHSVTIRNGFESLVFVQNSLLHIYAACGDTESAYKVFELMKERDLVAWNS 189

Query: 138 MISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQL 197
           MI+G+       N    + L L R M   G+ P+  ++ S+L   + L +L+LG++VH  
Sbjct: 190 MINGF-----ALNGRPNEALTLFREMSVEGVEPDGFTVVSLLSASAELGALELGRRVHVY 244

Query: 198 VFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKA 257
           + K  L K++     L+ +Y KCG + +A ++F E+  ++ V+W ++I G A +G GE+A
Sbjct: 245 LLKVGLSKNSHVTNSLLDLYAKCGAIREAQRVFSEMSERNAVSWTSLIVGLAVNGFGEEA 304

Query: 258 LRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVD 317
           L LF +M+ +G+ P  ITFV +L AC+H G++D G +YF  M  + GI  + +HY CMVD
Sbjct: 305 LELFKEMEGQGLVPSEITFVGVLYACSHCGMLDEGFEYFRRMKEECGIIPRIEHYGCMVD 364

Query: 318 LLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAG 377
           LL RAG + +A + I+ MP +P   I+ TLL AC +H  L L E A  +L NL P ++ G
Sbjct: 365 LLSRAGLVKQAYEYIQNMPVQPNAVIWRTLLGACTIHGHLGLGEIARSHLLNLEPKHS-G 423

Query: 378 CYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVS 437
            YV L+N+YA+ ++W DV  IR SM ++ V K PGYS +E+G  V+EF  GDR HP+   
Sbjct: 424 DYVLLSNLYASERRWSDVQVIRRSMLKDGVKKTPGYSLVELGNRVYEFTMGDRSHPQSQD 483

Query: 438 IHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIR 497
           ++  L+++ + +KL GYVP     L  + EE KEQ L +HSEK+AIAF L+  P GTPIR
Sbjct: 484 VYALLEKITELLKLEGYVPHTANVLADIEEEEKEQALSYHSEKVAIAFMLLNTPPGTPIR 543

Query: 498 VFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           V KNLRVC DCH A K I+ I  REI++RD +RFHHF+ G+CSC DYW
Sbjct: 544 VMKNLRVCADCHMAIKLIAKIYDREIVIRDRSRFHHFRGGSCSCKDYW 591



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 63/275 (22%), Positives = 110/275 (40%), Gaps = 74/275 (26%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIP----QPD---VVSYNIMLSCILLNSD 53
           M  +  V WNS++ GFA   G+  +A  LF ++     +PD   VVS        LL++ 
Sbjct: 179 MKERDLVAWNSMINGFALN-GRPNEALTLFREMSVEGVEPDGFTVVS--------LLSAS 229

Query: 54  DVVAAFDFFQRLPI--------KDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWS 105
             + A +  +R+ +        K++   N+++  + +   + +A+ +F  M E+N+VSW+
Sbjct: 230 AELGALELGRRVHVYLLKVGLSKNSHVTNSLLDLYAKCGAIREAQRVFSEMSERNAVSWT 289

Query: 106 AMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIG 165
           ++I G    G  ++A+ELFK                                     M G
Sbjct: 290 SLIVGLAVNGFGEEALELFK------------------------------------EMEG 313

Query: 166 LGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLED 225
            G+ P+  +   VL  CSH   L  G +  + +      K+   + P I  Y    DL  
Sbjct: 314 QGLVPSEITFVGVLYACSHCGMLDEGFEYFRRM------KEECGIIPRIEHYGCMVDLLS 367

Query: 226 ACKL----FLEIQ----RKDVVTWNAMISGYAQHG 252
              L    +  IQ    + + V W  ++     HG
Sbjct: 368 RAGLVKQAYEYIQNMPVQPNAVIWRTLLGACTIHG 402


>gi|255541924|ref|XP_002512026.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223549206|gb|EEF50695.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 810

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 225/622 (36%), Positives = 332/622 (53%), Gaps = 85/622 (13%)

Query: 2   NVKTTVNWNSVLAGFAKQRGKLKDAQELF------DKIPQPDVVSYNIMLSCILLNS--- 52
           N K  V+WN+++ G    +G + +A  LF      + I   +V   NI+ +C+ ++    
Sbjct: 196 NRKNAVSWNTMIGGLC-TKGYIFEAFNLFREMQMQEDIEVNEVTVLNILPACLEISQLRS 254

Query: 53  ---------------DDVVA---------------AFDFFQRLPIKDTASWNTMISGFVQ 82
                          D++VA               A   F  +  K   SWN +I G  Q
Sbjct: 255 LKELHGYSIRHGFQYDELVANGFVAAYAKCGMLICAERVFYSMETKTVNSWNALIGGCAQ 314

Query: 83  KKNMAKARDLFLAMP---------------------------------------EKNSVS 103
             +  KA +L++ M                                        E +S  
Sbjct: 315 NGDPRKALNLYIQMTYSGLVPDWFTIGSLLLASAHLKSLRYGKEVHGFVLRHGLEIDSFI 374

Query: 104 WSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMM 163
             +++S YI CG+   A  LF     KS V+W AMISGY      +N   ED L L R +
Sbjct: 375 GISLLSLYIHCGESSSARLLFDGMEEKSSVSWNAMISGY-----SQNGLPEDALILFRKL 429

Query: 164 IGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDL 223
           +  G +P+  ++ SVL  CS  S+L+LGK+ H    K+ L +D       I MY K G +
Sbjct: 430 VSDGFQPSDIAVVSVLGACSQQSALRLGKETHCYALKALLMEDVFVACSTIDMYAKSGCI 489

Query: 224 EDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC 283
           +++  +F  ++ KD+ +WNA+I+ Y  HG GE+++ LF++M+  G  PD  TF+ +L  C
Sbjct: 490 KESRSVFDGLKNKDLASWNAIIAAYGVHGDGEESIELFERMRKVGQMPDGFTFIGILTVC 549

Query: 284 NHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAI 343
           +HAGLV+ G++YF+ M N +GI  K +HY C++D+LGRAG+L +A+ L+ +MP +P   +
Sbjct: 550 SHAGLVEEGLKYFNEMQNFHGIEPKLEHYACVMDMLGRAGRLDDALRLVHEMPEQPDSRV 609

Query: 344 FGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMK 403
           + +LLS CR    L++ +  A  L  L P N    YV L+N+YA   +WDDV R+R  +K
Sbjct: 610 WSSLLSFCRNFGELEIGQIVAEKLLELEPKNVEN-YVSLSNLYAGSGRWDDVRRVRQMIK 668

Query: 404 ENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALH 463
           +  + K  G SWIE+G  VH F +GD + P+   +    ++LEK+M   GY P+    LH
Sbjct: 669 DIGLQKDAGCSWIELGGKVHSFVAGDNLLPQSKEMSMTWRKLEKKMCKIGYKPNTSAVLH 728

Query: 464 AVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREI 523
            V EE K + L  HSEKLAI FGL+    GT +R+FKNLR+C DCH A+K++S +  REI
Sbjct: 729 DVDEEKKIEKLRGHSEKLAICFGLLNTTKGTTLRIFKNLRICVDCHNASKFMSEVTGREI 788

Query: 524 IVRDTTRFHHFKDGTCSCGDYW 545
           I+RD  RFHHFKDG CSCGDYW
Sbjct: 789 IIRDNKRFHHFKDGLCSCGDYW 810



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 98/369 (26%), Positives = 162/369 (43%), Gaps = 80/369 (21%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQ------PDVVSYNIMLSCILLNSDD 54
           M V+  V+WNS+++GF+ + G  KD  ++  ++        PD+ +   +L       D 
Sbjct: 92  MPVRNLVSWNSIISGFS-ENGFSKDCFDMLVEMMAGEEGLLPDIATLVTVLPVCAREVD- 149

Query: 55  VVAAFDFFQRLPIK-----DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMIS 109
            V        L +K     D    N+++  + +   + +A+ LF     KN+VSW+ MI 
Sbjct: 150 -VQMGIRIHGLAVKLGLSEDVRVNNSLVDMYSKCGYLTEAQMLFDKNNRKNAVSWNTMIG 208

Query: 110 GYIECGQLDKAVELFK------------------------VAPVKSV------------- 132
           G    G + +A  LF+                        ++ ++S+             
Sbjct: 209 GLCTKGYIFEAFNLFREMQMQEDIEVNEVTVLNILPACLEISQLRSLKELHGYSIRHGFQ 268

Query: 133 ---VAWTAMISGYMKFGYV--------------ENSW-------AEDG-----LKLLRMM 163
              +     ++ Y K G +               NSW       A++G     L L   M
Sbjct: 269 YDELVANGFVAAYAKCGMLICAERVFYSMETKTVNSWNALIGGCAQNGDPRKALNLYIQM 328

Query: 164 IGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDL 223
              G+ P+  ++ S+LL  +HL SL+ GK+VH  V +  L  D+     L+S+Y  CG+ 
Sbjct: 329 TYSGLVPDWFTIGSLLLASAHLKSLRYGKEVHGFVLRHGLEIDSFIGISLLSLYIHCGES 388

Query: 224 EDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC 283
             A  LF  ++ K  V+WNAMISGY+Q+G  E AL LF K+  +G +P  I  V++L AC
Sbjct: 389 SSARLLFDGMEEKSSVSWNAMISGYSQNGLPEDALILFRKLVSDGFQPSDIAVVSVLGAC 448

Query: 284 NHAGLVDLG 292
           +    + LG
Sbjct: 449 SQQSALRLG 457



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 63/182 (34%), Positives = 106/182 (58%), Gaps = 8/182 (4%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLL-RMM 163
           +A+I+ Y + G +D AV++F   PV+++V+W ++ISG+      EN +++D   +L  MM
Sbjct: 70  NALIAMYGKFGFVDAAVKVFHYMPVRNLVSWNSIISGF-----SENGFSKDCFDMLVEMM 124

Query: 164 IGL-GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGD 222
            G  G+ P+ ++L +VL  C+    +Q+G ++H L  K  L +D      L+ MY KCG 
Sbjct: 125 AGEEGLLPDIATLVTVLPVCAREVDVQMGIRIHGLAVKLGLSEDVRVNNSLVDMYSKCGY 184

Query: 223 LEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMK-DEGMKPDSITFVALLL 281
           L +A  LF +  RK+ V+WN MI G    G   +A  LF +M+  E ++ + +T + +L 
Sbjct: 185 LTEAQMLFDKNNRKNAVSWNTMIGGLCTKGYIFEAFNLFREMQMQEDIEVNEVTVLNILP 244

Query: 282 AC 283
           AC
Sbjct: 245 AC 246



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 76/274 (27%), Positives = 120/274 (43%), Gaps = 49/274 (17%)

Query: 55  VVAAFDFFQRLPIKDTASWNTMISGFVQK-----------KNMAKARDLF---------- 93
           V AA   F  +P+++  SWN++ISGF +            + MA    L           
Sbjct: 82  VDAAVKVFHYMPVRNLVSWNSIISGFSENGFSKDCFDMLVEMMAGEEGLLPDIATLVTVL 141

Query: 94  ---------------------LAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSV 132
                                L + E   V+ ++++  Y +CG L +A  LF     K+ 
Sbjct: 142 PVCAREVDVQMGIRIHGLAVKLGLSEDVRVN-NSLVDMYSKCGYLTEAQMLFDKNNRKNA 200

Query: 133 VAWTAMISGYMKFGYVENSWAEDGLKLLR-MMIGLGIRPNASSLSSVLLGCSHLSSLQLG 191
           V+W  MI G    GY+  ++      L R M +   I  N  ++ ++L  C  +S L+  
Sbjct: 201 VSWNTMIGGLCTKGYIFEAF-----NLFREMQMQEDIEVNEVTVLNILPACLEISQLRSL 255

Query: 192 KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQH 251
           K++H    +     D       ++ Y KCG L  A ++F  ++ K V +WNA+I G AQ+
Sbjct: 256 KELHGYSIRHGFQYDELVANGFVAAYAKCGMLICAERVFYSMETKTVNSWNALIGGCAQN 315

Query: 252 GKGEKALRLFDKMKDEGMKPDSITFVALLLACNH 285
           G   KAL L+ +M   G+ PD  T  +LLLA  H
Sbjct: 316 GDPRKALNLYIQMTYSGLVPDWFTIGSLLLASAH 349



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 80/159 (50%), Gaps = 3/159 (1%)

Query: 178 VLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKD 237
           V+  C+      LG+ +H +V K  L  D      LI+MY K G ++ A K+F  +  ++
Sbjct: 37  VIKACTGSLDRGLGEVIHGMVIKMGLLLDVFVGNALIAMYGKFGFVDAAVKVFHYMPVRN 96

Query: 238 VVTWNAMISGYAQHGKGEKALRLFDKM--KDEGMKPDSITFVALLLACNHAGLVDLGIQY 295
           +V+WN++ISG++++G  +    +  +M   +EG+ PD  T V +L  C     V +GI+ 
Sbjct: 97  LVSWNSIISGFSENGFSKDCFDMLVEMMAGEEGLLPDIATLVTVLPVCAREVDVQMGIR- 155

Query: 296 FDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKK 334
              +    G++        +VD+  + G L EA  L  K
Sbjct: 156 IHGLAVKLGLSEDVRVNNSLVDMYSKCGYLTEAQMLFDK 194


>gi|359492337|ref|XP_002284789.2| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Vitis vinifera]
          Length = 694

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 210/535 (39%), Positives = 321/535 (60%), Gaps = 18/535 (3%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWN-----T 75
           G  +DAQ LFD++P  D+VS+N ++S  L     + A  + F R+  +     N     +
Sbjct: 168 GYDEDAQRLFDEMPNKDLVSWNSLMSG-LSGRGYLGACLNAFCRMRTESGRQPNEVTLLS 226

Query: 76  MISGFVQKKNMAKARDLF-----LAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVK 130
           ++S       + + + L      L M  K  V  +++I+ Y + G LD A +LF+  PV+
Sbjct: 227 VVSACADMGALDEGKSLHGVVVKLGMSGKAKVV-NSLINMYGKLGFLDAASQLFEEMPVR 285

Query: 131 SVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQL 190
           S+V+W +M+  +   GY     AE G+ L  +M   GI P+ +++ ++L  C+     + 
Sbjct: 286 SLVSWNSMVVIHNHNGY-----AEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQ 340

Query: 191 GKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQ 250
            + +H  + +     D    T L+++Y K G L  +  +F EI+ +D + W AM++GYA 
Sbjct: 341 AESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEIKDRDRIAWTAMLAGYAV 400

Query: 251 HGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPD 310
           H  G +A++LFD M  EG++ D +TF  LL AC+H+GLV+ G +YF+ M   Y +  + D
Sbjct: 401 HACGREAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLD 460

Query: 311 HYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNL 370
           HY+CMVDLLGR+G+L +A +LIK MP +P   ++G LL ACRV+  ++L +  A  L +L
Sbjct: 461 HYSCMVDLLGRSGRLEDAYELIKSMPMEPSSGVWGALLGACRVYGNVELGKEVAEQLLSL 520

Query: 371 NPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDR 430
           +P++    Y+ L+NIY+A   W D +++R  MKE  + + PG S+IE G  +H F  GD+
Sbjct: 521 DPSDHRN-YIMLSNIYSAAGLWRDASKVRALMKERRLTRNPGCSFIEHGNKIHRFVVGDQ 579

Query: 431 VHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKV 490
           +HP    IH KL+EL ++++ AG  P  EF LH + EEVK  ++  HSEKLAIAFGL+  
Sbjct: 580 LHPRSDEIHTKLEELIRKIREAGCAPKTEFVLHDIDEEVKVDMINKHSEKLAIAFGLLVT 639

Query: 491 PLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
             G P+ + KNLR+CGDCH   K+ S +EKR II+RD+ RFHHF DG CSC DYW
Sbjct: 640 GSGVPLIITKNLRICGDCHSTAKFASLLEKRTIIIRDSKRFHHFADGLCSCRDYW 694



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 74/248 (29%), Positives = 127/248 (51%), Gaps = 6/248 (2%)

Query: 107 MISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGL 166
           ++S Y + G  + A  LF   P K +V+W +++SG    GY+            RM    
Sbjct: 160 LVSMYFKLGYDEDAQRLFDEMPNKDLVSWNSLMSGLSGRGYLGACLN----AFCRMRTES 215

Query: 167 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 226
           G +PN  +L SV+  C+ + +L  GK +H +V K  +      +  LI+MY K G L+ A
Sbjct: 216 GRQPNEVTLLSVVSACADMGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAA 275

Query: 227 CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHA 286
            +LF E+  + +V+WN+M+  +  +G  EK + LF+ MK  G+ PD  T VALL AC   
Sbjct: 276 SQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDT 335

Query: 287 GLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGT 346
           GL     +   + ++  G  A     T +++L  + G+L  + D+ +++  + + A +  
Sbjct: 336 GL-GRQAESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEIKDRDRIA-WTA 393

Query: 347 LLSACRVH 354
           +L+   VH
Sbjct: 394 MLAGYAVH 401



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 78/298 (26%), Positives = 138/298 (46%), Gaps = 13/298 (4%)

Query: 173 SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLE 232
           S + S++   S  +S+     +H  V KS    D      L+SMY K G  EDA +LF E
Sbjct: 120 SIVQSLVFAISSCTSVSYCSAIHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDE 179

Query: 233 IQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE-GMKPDSITFVALLLACNHAGLVDL 291
           +  KD+V+WN+++SG +  G     L  F +M+ E G +P+ +T ++++ AC   G +D 
Sbjct: 180 MPNKDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACADMGALDE 239

Query: 292 GIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSAC 351
           G +    +V   G++ K      ++++ G+ G L  A  L ++MP +       +  S  
Sbjct: 240 G-KSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRS----LVSWNSMV 294

Query: 352 RVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMP 411
            +H     AE   M+LFNL     AG     A + A ++   D    R +   +  +   
Sbjct: 295 VIHNHNGYAE-KGMDLFNL--MKRAGINPDQATMVALLRACTDTGLGRQAESIHAYIHRC 351

Query: 412 GYSW-IEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEE 468
           G++  I + T +    +       L +  +  +E++ R ++A       +A+HA G E
Sbjct: 352 GFNADIIIATALLNLYAK---LGRLNASEDIFEEIKDRDRIAWTAMLAGYAVHACGRE 406


>gi|297807711|ref|XP_002871739.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317576|gb|EFH47998.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 850

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 218/581 (37%), Positives = 329/581 (56%), Gaps = 64/581 (11%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCI--LLNSDDVVAAFDFFQRLPIK-DTASWNTMI 77
           G + +A  +F  +P  DVVS+N M++    +   +D V  F+  Q   IK D  +W+  I
Sbjct: 278 GMMDEANTVFSNMPVKDVVSWNAMVAGYSQIGRFEDAVRLFEQMQEEKIKMDVVTWSAAI 337

Query: 78  SGFVQK----KNMAKARDLFLAMPEKNSVSWSAMISG----------------------- 110
           SG+ Q+    + +   R +  +  + N V+  +++SG                       
Sbjct: 338 SGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPMD 397

Query: 111 -------------------YIECGQLDKAVELF-KVAP-VKSVVAWTAMISGYMKFGYVE 149
                              Y +C ++D A  +F  ++P  + VV WT MI GY + G   
Sbjct: 398 LRKNGHGDENMVINQLIDMYAKCKKVDIARAMFDSLSPKERDVVTWTVMIGGYSQHGD-- 455

Query: 150 NSWAEDGLKLLRMMI--GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDT 207
              A   L+LL  M       RPNA ++S  L+ C+ L++L +GKQ+H    ++   ++ 
Sbjct: 456 ---ANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALSIGKQIHAYALRNQ--QNA 510

Query: 208 TAL---TPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKM 264
             L     LI MY KCGD+ DA  +F  +  K+ VTW ++++GY  HG GE+AL +F++M
Sbjct: 511 VPLFVSNCLIDMYAKCGDIGDARLVFDNMMEKNEVTWTSLMTGYGMHGYGEEALGIFEEM 570

Query: 265 KDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGK 324
           +  G K D +T + +L AC+H+G++D G++YF+ M  D+G++  P+HY C+VDLLGRAG+
Sbjct: 571 RRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTDFGVSPGPEHYACLVDLLGRAGR 630

Query: 325 LVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLAN 384
           L  A+ LI++MP +P P ++  LLS CR+H +++L E+AA  +  L  +N  G Y  L+N
Sbjct: 631 LNAALRLIEEMPMEPPPVVWVALLSCCRIHGKVELGEYAAKKITEL-ASNNDGSYTLLSN 689

Query: 385 IYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKE 444
           +YA   +W DV RIR  M+   + K PG SW+E       F  GD+ HP    I++ L +
Sbjct: 690 MYANAGRWKDVTRIRSLMRHKGIKKRPGCSWVEGIKGTTTFFVGDKTHPHAKEIYQVLSD 749

Query: 445 LEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRV 504
             +R+K  GYVP+  FALH V +E K+ LL  HSEKLA+A+G++  P G  IR+ KNLRV
Sbjct: 750 HMQRIKDIGYVPETGFALHDVDDEEKDDLLFEHSEKLALAYGILTTPQGAAIRITKNLRV 809

Query: 505 CGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           CGDCH A  Y+S I   EII+RD++RFHHFK+G CSC  YW
Sbjct: 810 CGDCHTAFTYMSRIIDHEIILRDSSRFHHFKNGLCSCKGYW 850



 Score =  158 bits (400), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 107/351 (30%), Positives = 173/351 (49%), Gaps = 29/351 (8%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQP------DVVSYNIMLSCILLNSDD 54
           M V   V+WNS++  +AK  GK K A E+F K+         D+   N++  C  + +  
Sbjct: 188 MPVWDVVSWNSIIESYAKL-GKPKMALEMFSKMTNEFGFRPDDITLVNVLPPCASVGTRS 246

Query: 55  VVAAFDFFQRLP--IKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYI 112
           +   F  F      I++    N ++  + +   M +A  +F  MP K+ VSW+AM++GY 
Sbjct: 247 LGKQFHGFAVTSEMIQNMFVGNCLVDMYAKFGMMDEANTVFSNMPVKDVVSWNAMVAGYS 306

Query: 113 ECGQLDKAVELFKVAPVK----SVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGI 168
           + G+ + AV LF+    +     VV W+A ISGY + G        + L + R M+  GI
Sbjct: 307 QIGRFEDAVRLFEQMQEEKIKMDVVTWSAAISGYAQRGL-----GYEALGVCRQMLSSGI 361

Query: 169 RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPL-------CKDTTALTPLISMYCKCG 221
           +PN  +L SVL GC+ + +L  GK++H    K P+         +   +  LI MY KC 
Sbjct: 362 KPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPMDLRKNGHGDENMVINQLIDMYAKCK 421

Query: 222 DLEDACKLF--LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEG--MKPDSITFV 277
            ++ A  +F  L  + +DVVTW  MI GY+QHG   KAL L  +M +E    +P++ T  
Sbjct: 422 KVDIARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTIS 481

Query: 278 ALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEA 328
             L+AC     + +G Q     + +   A       C++D+  + G + +A
Sbjct: 482 CALVACASLAALSIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGDIGDA 532



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 63/185 (34%), Positives = 105/185 (56%), Gaps = 6/185 (3%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI 164
           +A+++ Y  CG L  A ++F   PV  VV+W ++I  Y K G  + +     L++   M 
Sbjct: 166 NALVAMYSRCGSLSDARKVFDEMPVWDVVSWNSIIESYAKLGKPKMA-----LEMFSKMT 220

Query: 165 G-LGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDL 223
              G RP+  +L +VL  C+ + +  LGKQ H     S + ++      L+ MY K G +
Sbjct: 221 NEFGFRPDDITLVNVLPPCASVGTRSLGKQFHGFAVTSEMIQNMFVGNCLVDMYAKFGMM 280

Query: 224 EDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC 283
           ++A  +F  +  KDVV+WNAM++GY+Q G+ E A+RLF++M++E +K D +T+ A +   
Sbjct: 281 DEANTVFSNMPVKDVVSWNAMVAGYSQIGRFEDAVRLFEQMQEEKIKMDVVTWSAAISGY 340

Query: 284 NHAGL 288
              GL
Sbjct: 341 AQRGL 345



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 78/243 (32%), Positives = 112/243 (46%), Gaps = 21/243 (8%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVK--SVVAWTAMISGYMKFGYVENSWAEDGLKLLRM 162
           S +IS YI  G L  AV L +  P     V  W ++I  Y       N  A   L    +
Sbjct: 63  SHLISTYISLGCLSHAVSLLRRFPPSDAGVYHWNSLIRSYGN-----NGRANKCLSSFCL 117

Query: 163 MIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGD 222
           M  L   P+  +   V   C  +SS++ G   H L   +    +      L++MY +CG 
Sbjct: 118 MHSLSWTPDNYTFPFVFKACGEISSVRCGDSSHALSRVTGFMSNVFVGNALVAMYSRCGS 177

Query: 223 LEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE-GMKPDSITFVALLL 281
           L DA K+F E+   DVV+WN++I  YA+ GK + AL +F KM +E G +PD IT V +L 
Sbjct: 178 LSDARKVFDEMPVWDVVSWNSIIESYAKLGKPKMALEMFSKMTNEFGFRPDDITLVNVLP 237

Query: 282 ACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY------TCMVDLLGRAGKLVEAVDLIKKM 335
            C   G   LG Q+       +G A   +         C+VD+  + G + EA  +   M
Sbjct: 238 PCASVGTRSLGKQF-------HGFAVTSEMIQNMFVGNCLVDMYAKFGMMDEANTVFSNM 290

Query: 336 PFK 338
           P K
Sbjct: 291 PVK 293



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 76/345 (22%), Positives = 136/345 (39%), Gaps = 71/345 (20%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSY--NIMLSCILLNSDDVVAAFDF 61
           +  V W  ++ G++ Q G    A EL  ++ + D  +      +SC L+    + A    
Sbjct: 438 RDVVTWTVMIGGYS-QHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAAL--- 493

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAV 121
                     S    I  +  + N   A  LF++         + +I  Y +CG +  A 
Sbjct: 494 ----------SIGKQIHAYALR-NQQNAVPLFVS---------NCLIDMYAKCGDIGDAR 533

Query: 122 ELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLG 181
            +F     K+ V WT++++GY   GY      E+ L +   M  +G + +  +L  VL  
Sbjct: 534 LVFDNMMEKNEVTWTSLMTGYGMHGY-----GEEALGIFEEMRRIGFKLDGVTLLVVLYA 588

Query: 182 CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTW 241
           CSH   +  G +    +      K    ++P        G    AC              
Sbjct: 589 CSHSGMIDQGMEYFNRM------KTDFGVSP--------GPEHYAC-------------- 620

Query: 242 NAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN 301
             ++    + G+   ALRL ++M    M+P  + +VALL  C   G V+LG +Y    + 
Sbjct: 621 --LVDLLGRAGRLNAALRLIEEMP---MEPPPVVWVALLSCCRIHGKVELG-EYAAKKIT 674

Query: 302 DYGIAAKPD-HYTCMVDLLGRAGK---LVEAVDLIKKMPFKPQPA 342
           +  +A+  D  YT + ++   AG+   +     L++    K +P 
Sbjct: 675 E--LASNNDGSYTLLSNMYANAGRWKDVTRIRSLMRHKGIKKRPG 717


>gi|224065723|ref|XP_002301939.1| predicted protein [Populus trichocarpa]
 gi|222843665|gb|EEE81212.1| predicted protein [Populus trichocarpa]
          Length = 613

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 207/528 (39%), Positives = 305/528 (57%), Gaps = 46/528 (8%)

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM-------PEKNSV-------- 102
           A + F  LP KD  SWN++ISGF ++ ++     L   M       P + +V        
Sbjct: 92  ALELFDELPDKDLVSWNSLISGFSRRADLGICLGLLFRMRFEMGLKPNEVTVIPVVSACA 151

Query: 103 -------------------------SWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTA 137
                                      +++I+ Y +CG L+ A  LF+   V+S+V+W +
Sbjct: 152 GVGELDVGKCIHGIAVKSGMLLEVKVVNSLINLYGKCGCLEAACCLFEGMSVQSLVSWNS 211

Query: 138 MISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQL 197
           M++ ++  G      AE G+    MM   GI  + +++ S+LL C +L   +L + VH  
Sbjct: 212 MVAVHVHMG-----LAEKGIGYFIMMRRAGINSDQATVVSLLLACENLGVRKLAEAVHGY 266

Query: 198 VFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKA 257
           +    L  +    T L+ +Y K G L D+CK+F  +   D V W AM+S YA HG+G +A
Sbjct: 267 ILNGGLDGNLAIATALLDLYAKLGTLSDSCKVFGGMINPDAVAWTAMLSSYAMHGRGREA 326

Query: 258 LRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVD 317
           +  F+ M  EG+ PD +TF  LL AC+H+GLV+ G  YF  M   YG+  + +HY+CMVD
Sbjct: 327 IEHFELMVREGVVPDHVTFTHLLSACSHSGLVEEGKNYFKIMYEFYGVELRVEHYSCMVD 386

Query: 318 LLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAG 377
           LLGR+G L +A  LIK MP +P   ++G L+ ACRV   ++L +  A  LF+L+P+++  
Sbjct: 387 LLGRSGHLNDAYKLIKSMPMEPNSGVWGALIGACRVRGNIELGKEVAERLFSLDPSDSRN 446

Query: 378 CYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVS 437
            Y+ L+N+Y+A  +W D +++R  MKE  +++ PG S+IE G  +H F  GD+ HP+   
Sbjct: 447 -YITLSNMYSAAGQWRDASKVRALMKERVLIRNPGCSYIEHGNKIHCFVMGDQSHPDTEQ 505

Query: 438 IHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIR 497
           I+ KL+EL ++ +  G+    E+ LH V EEVKE L+  HSEKLAIAFGL+    G P+ 
Sbjct: 506 IYNKLEELVRKNREVGFASKTEYVLHDVDEEVKEDLINKHSEKLAIAFGLLVTNAGMPLI 565

Query: 498 VFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           + KN+R+CGDCH   K IS IEKR II+RDT RFHHF +G CSCGDYW
Sbjct: 566 ITKNIRICGDCHGFAKLISLIEKRTIIIRDTKRFHHFTNGLCSCGDYW 613



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 76/253 (30%), Positives = 131/253 (51%), Gaps = 12/253 (4%)

Query: 107 MISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGL---KLLRMM 163
           ++S Y+E G    A+ELF   P K +V+W ++ISG+ +        A+ G+    L RM 
Sbjct: 79  LVSSYVELGCTKDALELFDELPDKDLVSWNSLISGFSR-------RADLGICLGLLFRMR 131

Query: 164 IGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDL 223
             +G++PN  ++  V+  C+ +  L +GK +H +  KS +  +   +  LI++Y KCG L
Sbjct: 132 FEMGLKPNEVTVIPVVSACAGVGELDVGKCIHGIAVKSGMLLEVKVVNSLINLYGKCGCL 191

Query: 224 EDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC 283
           E AC LF  +  + +V+WN+M++ +   G  EK +  F  M+  G+  D  T V+LLLAC
Sbjct: 192 EAACCLFEGMSVQSLVSWNSMVAVHVHMGLAEKGIGYFIMMRRAGINSDQATVVSLLLAC 251

Query: 284 NHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAI 343
            + G+  L       ++N  G+       T ++DL  + G L ++  +   M   P    
Sbjct: 252 ENLGVRKLAEAVHGYILNG-GLDGNLAIATALLDLYAKLGTLSDSCKVFGGM-INPDAVA 309

Query: 344 FGTLLSACRVHKR 356
           +  +LS+  +H R
Sbjct: 310 WTAMLSSYAMHGR 322



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 61/275 (22%), Positives = 116/275 (42%), Gaps = 52/275 (18%)

Query: 1   MNVKTTVNWNSVLA-----GFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDD- 54
           M+V++ V+WNS++A     G A++                   + Y IM+    +NSD  
Sbjct: 201 MSVQSLVSWNSMVAVHVHMGLAEKG------------------IGYFIMMRRAGINSDQA 242

Query: 55  -VVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE 113
            VV+     + L ++  A     + G++    +           + N    +A++  Y +
Sbjct: 243 TVVSLLLACENLGVRKLAE---AVHGYILNGGL-----------DGNLAIATALLDLYAK 288

Query: 114 CGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNAS 173
            G L  + ++F        VAWTAM+S Y   G        + ++   +M+  G+ P+  
Sbjct: 289 LGTLSDSCKVFGGMINPDAVAWTAMLSSYAMHGR-----GREAIEHFELMVREGVVPDHV 343

Query: 174 SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCK-DTTALTPLISMYCKCGDLEDACKLFLE 232
           + + +L  CSH   ++ GK   +++++    +      + ++ +  + G L DA KL   
Sbjct: 344 TFTHLLSACSHSGLVEEGKNYFKIMYEFYGVELRVEHYSCMVDLLGRSGHLNDAYKLIKS 403

Query: 233 I-QRKDVVTWNAMIS-----GYAQHGKGEKALRLF 261
           +    +   W A+I      G  + GK E A RLF
Sbjct: 404 MPMEPNSGVWGALIGACRVRGNIELGK-EVAERLF 437


>gi|225456890|ref|XP_002277458.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
           [Vitis vinifera]
          Length = 698

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 215/545 (39%), Positives = 321/545 (58%), Gaps = 31/545 (5%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M+ +    WNS+ AG+ K  G  ++  +LF ++ + D+    + L  +L           
Sbjct: 185 MSERNVRTWNSMFAGYTKS-GNWEEVVKLFHEMLELDIRFDEVTLVSVLTACG------- 236

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
              RL   +   W   I+ +V++K +           + N    ++++  Y +CGQ+D A
Sbjct: 237 ---RLADLELGEW---INRYVEEKGL-----------KGNPTLITSLVDMYAKCGQVDTA 279

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLL 180
             LF     + VVAW+AMISGY      + S   + L L   M    I PN  ++ S+L 
Sbjct: 280 RRLFDQMDRRDVVAWSAMISGYS-----QASRCREALDLFHEMQKANIDPNEITMVSILS 334

Query: 181 GCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVT 240
            C+ L +L+ GK VH  + K  +    T  T L+  Y KCG +E + ++F ++  K+V++
Sbjct: 335 SCAVLGALETGKWVHFFIKKKRMKLTVTLGTALMDFYAKCGSVESSIEVFGKMPVKNVLS 394

Query: 241 WNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV 300
           W  +I G A +G+G+KAL  F  M ++ ++P+ +TF+ +L AC+HAGLVD G   F SM 
Sbjct: 395 WTVLIQGLASNGQGKKALEYFYLMLEKNVEPNDVTFIGVLSACSHAGLVDEGRDLFVSMS 454

Query: 301 NDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLA 360
            D+GI  + +HY CMVD+LGRAG + EA   IK MP +P   I+ TLL++C+VHK +++ 
Sbjct: 455 RDFGIEPRIEHYGCMVDILGRAGLIEEAFQFIKNMPIQPNAVIWRTLLASCKVHKNVEIG 514

Query: 361 EFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGT 420
           E +   L  L P ++ G Y+ L+NIYA++ +W+D  ++R  MKE  + K PG S IE+  
Sbjct: 515 EESLKQLIILEPTHS-GDYILLSNIYASVGRWEDALKVRGEMKEKGIKKTPGCSLIELDG 573

Query: 421 VVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEK 480
           V+HEF + D VH +   I+  ++++ K++K AGYVP+   A     E+ KE  +  HSEK
Sbjct: 574 VIHEFFAEDNVHSQSEEIYNAIEDMMKQIKSAGYVPNTAEARLDAEEDDKESSVSHHSEK 633

Query: 481 LAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCS 540
           LAIAFGLIK P GT IR+ KNLRVC DCH ATK +S +  REI+VRD TRFHHFK+G+CS
Sbjct: 634 LAIAFGLIKSPPGTTIRITKNLRVCTDCHNATKLVSKVFNREIVVRDRTRFHHFKEGSCS 693

Query: 541 CGDYW 545
           C DYW
Sbjct: 694 CNDYW 698



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 71/259 (27%), Positives = 126/259 (48%), Gaps = 11/259 (4%)

Query: 117 LDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLS 176
           +D AV +F+        A+  MI G+            + + L + M    ++P+  +  
Sbjct: 74  MDYAVSIFRQIDEPDSPAYNIMIRGFTL-----KQSPHEAILLFKEMHENSVQPDEFTFP 128

Query: 177 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK 236
            +L  CS L +L  G+Q+H L+ K            LI MY  CG++E A ++F E+  +
Sbjct: 129 CILKVCSRLQALSEGEQIHALIMKCGFGSHGFVKNTLIHMYANCGEVEVARRVFDEMSER 188

Query: 237 DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYF 296
           +V TWN+M +GY + G  E+ ++LF +M +  ++ D +T V++L AC     ++LG ++ 
Sbjct: 189 NVRTWNSMFAGYTKSGNWEEVVKLFHEMLELDIRFDEVTLVSVLTACGRLADLELG-EWI 247

Query: 297 DSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK---PQPAIFGTLLSACRV 353
           +  V + G+   P   T +VD+  + G++  A  L  +M  +      A+      A R 
Sbjct: 248 NRYVEEKGLKGNPTLITSLVDMYAKCGQVDTARRLFDQMDRRDVVAWSAMISGYSQASRC 307

Query: 354 HKRLDLAEFAAMNLFNLNP 372
            + LDL  F  M   N++P
Sbjct: 308 REALDL--FHEMQKANIDP 324


>gi|357440191|ref|XP_003590373.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355479421|gb|AES60624.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 840

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 221/556 (39%), Positives = 322/556 (57%), Gaps = 42/556 (7%)

Query: 23  LKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTA----------- 71
           L DA  +FD++P+ +VVS+  M+S          A   FF  + I  T            
Sbjct: 294 LGDAHNVFDEMPERNVVSWTAMISAYSQRGYASQALNLFFADVKISLTGVYAIDKLKLSN 353

Query: 72  -------------SWNTMIS------GFVQKKNMAKARDLFLAMPEKNSV-SWSAMISGY 111
                        ++ T+++      GF+  + +     L + +  ++ V   S+++  Y
Sbjct: 354 PNRPWVCTEPNEFTFATVLTSCTSSLGFILGRQI---HSLIIKLNYEDHVFVGSSLLDMY 410

Query: 112 IECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPN 171
            + G++ +A  +F+  P + VV+ TA+ISGY + G       E+ L+L R + G G++ N
Sbjct: 411 AKDGKIHEARTVFECLPERDVVSCTAIISGYAQLG-----LDEEALELFRRLQGEGMKSN 465

Query: 172 ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFL 231
             + + VL   S L++L LGKQVH  V +S +         LI MY KCG+L  + ++F 
Sbjct: 466 YVTYTGVLTALSGLAALDLGKQVHNHVLRSEIPSFVVLQNSLIDMYSKCGNLTYSRRIFD 525

Query: 232 EIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEG-MKPDSITFVALLLACNHAGLVD 290
            +  + V++WNAM+ GY++HG+G + L+LF  M++E  +KPDS+T +A+L  C+H GL D
Sbjct: 526 TMYERTVISWNAMLVGYSKHGEGREVLKLFTLMREETKVKPDSVTILAVLSGCSHGGLED 585

Query: 291 LGIQYFDSMVN-DYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLS 349
            G+  F+ M +    +  K +HY C+VDLLGR+G++ EA + IKKMPF+P  AI+G+LL 
Sbjct: 586 KGLNIFNDMSSGKIEVEPKMEHYGCVVDLLGRSGRVEEAFEFIKKMPFEPTAAIWGSLLG 645

Query: 350 ACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVK 409
           ACRVH  +D+ EFA   L  + P NA G YV L+N+YA+  +W+DV+ +R  M +  V K
Sbjct: 646 ACRVHSNVDIGEFAGQQLLEIEPGNA-GNYVILSNLYASAGRWEDVSSLRDLMLKKTVTK 704

Query: 410 MPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEV 469
            PG S IE+  V+H F + DR HP    I  K+KEL    K  GYVPDL   LH V EE 
Sbjct: 705 EPGRSSIELDQVLHTFHASDRSHPRREEICMKVKELSTSFKEVGYVPDLSCVLHDVDEEQ 764

Query: 470 KEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTT 529
           KE++LL HSEKLA++FGLI  P   PIRV KNLR+C DCH   KYIS +  RE+ +RD  
Sbjct: 765 KEKILLGHSEKLALSFGLIASPASVPIRVIKNLRICVDCHNFAKYISKVYGREVSLRDKN 824

Query: 530 RFHHFKDGTCSCGDYW 545
           RFH    G CSC DYW
Sbjct: 825 RFHRIVGGKCSCEDYW 840



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 75/260 (28%), Positives = 126/260 (48%), Gaps = 16/260 (6%)

Query: 76  MISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAW 135
           +I  + +  ++  A ++F  MPE+N VSW+AMIS Y + G   +A+ LF  A VK  +  
Sbjct: 284 LIVLYTKCDSLGDAHNVFDEMPERNVVSWTAMISAYSQRGYASQALNLF-FADVKISLTG 342

Query: 136 TAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVH 195
              I   +K       W             +   PN  + ++VL  C+      LG+Q+H
Sbjct: 343 VYAIDK-LKLSNPNRPW-------------VCTEPNEFTFATVLTSCTSSLGFILGRQIH 388

Query: 196 QLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGE 255
            L+ K          + L+ MY K G + +A  +F  +  +DVV+  A+ISGYAQ G  E
Sbjct: 389 SLIIKLNYEDHVFVGSSLLDMYAKDGKIHEARTVFECLPERDVVSCTAIISGYAQLGLDE 448

Query: 256 KALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCM 315
           +AL LF +++ EGMK + +T+  +L A +    +DLG Q  + ++    I +       +
Sbjct: 449 EALELFRRLQGEGMKSNYVTYTGVLTALSGLAALDLGKQVHNHVLRS-EIPSFVVLQNSL 507

Query: 316 VDLLGRAGKLVEAVDLIKKM 335
           +D+  + G L  +  +   M
Sbjct: 508 IDMYSKCGNLTYSRRIFDTM 527



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 55/203 (27%), Positives = 94/203 (46%), Gaps = 31/203 (15%)

Query: 159 LLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYC 218
           LL+M +  G      + +++L  C +  + + G++VH  + K+         T LI +Y 
Sbjct: 231 LLQMALH-GFNMKFENYNAILNECVNKRAFREGQRVHAHMIKTRYLPSVFLRTRLIVLYT 289

Query: 219 KCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLF--------------DKM 264
           KC  L DA  +F E+  ++VV+W AMIS Y+Q G   +AL LF              DK+
Sbjct: 290 KCDSLGDAHNVFDEMPERNVVSWTAMISAYSQRGYASQALNLFFADVKISLTGVYAIDKL 349

Query: 265 KDEG-------MKPDSITFVALLLACNHAGLVDLGIQYFDSMVN-DYGIAAKPDHY---T 313
           K           +P+  TF  +L +C  +    LG Q    ++  +Y      DH    +
Sbjct: 350 KLSNPNRPWVCTEPNEFTFATVLTSCTSSLGFILGRQIHSLIIKLNY-----EDHVFVGS 404

Query: 314 CMVDLLGRAGKLVEAVDLIKKMP 336
            ++D+  + GK+ EA  + + +P
Sbjct: 405 SLLDMYAKDGKIHEARTVFECLP 427



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 93/185 (50%), Gaps = 18/185 (9%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCIL-LNSDDVVAAFDFFQRLPIK 68
           +S+L  +AK  GK+ +A+ +F+ +P+ DVVS   ++S    L  D+   A + F+RL  +
Sbjct: 404 SSLLDMYAKD-GKIHEARTVFECLPERDVVSCTAIISGYAQLGLDE--EALELFRRLQGE 460

Query: 69  DTASWNTMISGFVQKKNMAKARDL------FLAMPEKNS--VSWSAMISGYIECGQLDKA 120
              S     +G +   +   A DL       +   E  S  V  +++I  Y +CG L  +
Sbjct: 461 GMKSNYVTYTGVLTALSGLAALDLGKQVHNHVLRSEIPSFVVLQNSLIDMYSKCGNLTYS 520

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI-GLGIRPNASSLSSVL 179
             +F     ++V++W AM+ GY K G        + LKL  +M     ++P++ ++ +VL
Sbjct: 521 RRIFDTMYERTVISWNAMLVGYSKHG-----EGREVLKLFTLMREETKVKPDSVTILAVL 575

Query: 180 LGCSH 184
            GCSH
Sbjct: 576 SGCSH 580



 Score = 42.4 bits (98), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 77/153 (50%), Gaps = 19/153 (12%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQ 63
           +  V+  ++++G+A Q G  ++A ELF ++ Q + +  N +    +L +   +AA D  +
Sbjct: 429 RDVVSCTAIISGYA-QLGLDEEALELFRRL-QGEGMKSNYVTYTGVLTALSGLAALDLGK 486

Query: 64  RLPIKDTAS--------WNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECG 115
           ++      S         N++I  + +  N+  +R +F  M E+  +SW+AM+ GY + G
Sbjct: 487 QVHNHVLRSEIPSFVVLQNSLIDMYSKCGNLTYSRRIFDTMYERTVISWNAMLVGYSKHG 546

Query: 116 QLDKAVELF-------KVAPVKSVVAWTAMISG 141
           +  + ++LF       KV P    V   A++SG
Sbjct: 547 EGREVLKLFTLMREETKVKP--DSVTILAVLSG 577


>gi|356558231|ref|XP_003547411.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
            chloroplastic-like [Glycine max]
          Length = 1135

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 216/557 (38%), Positives = 319/557 (57%), Gaps = 35/557 (6%)

Query: 4    KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQ----PDVVSYNIMLS----CILLNSDDV 55
            +T   WN++LAG+A+     +  +   + I +    P+  ++  +L     C + +  + 
Sbjct: 599  RTVAVWNALLAGYARNEFDDQALRLFVEMISESEFCPNATTFASVLPACVRCKVFSDKEG 658

Query: 56   VAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECG 115
            +  +   +R   KD    N ++  + +   +  ++ +F  M +++ VSW+ MI+G I CG
Sbjct: 659  IHGY-IVKRGFGKDKYVQNALMDMYSRMGRVEISKTIFGRMNKRDIVSWNTMITGCIVCG 717

Query: 116  QLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSL 175
            + D A+ L      +     +     Y           +DG        G+  +PN+ +L
Sbjct: 718  RYDDALNLLHEMQRRQGEDGSDTFVDY----------EDDG--------GVPFKPNSVTL 759

Query: 176  SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR 235
             +VL GC+ L++L  GK++H    K  L  D    + L+ MY KCG L  A ++F ++  
Sbjct: 760  MTVLPGCAALAALGKGKEIHAYAVKQKLAMDVAVGSALVDMYAKCGCLNLASRVFDQMPI 819

Query: 236  KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEG------MKPDSITFVALLLACNHAGLV 289
            ++V+TWN +I  Y  HGKGE+AL LF  M   G      ++P+ +T++A+  AC+H+G+V
Sbjct: 820  RNVITWNVLIMAYGMHGKGEEALELFRIMTAGGGSNREVIRPNEVTYIAIFAACSHSGMV 879

Query: 290  DLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPA-IFGTLL 348
            D G+  F +M   +G+  + DHY C+VDLLGR+G++ EA +LI  MP        + +LL
Sbjct: 880  DEGLHLFHTMKASHGVEPRGDHYACLVDLLGRSGRVKEAYELINTMPSNLNKVDAWSSLL 939

Query: 349  SACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVV 408
             ACR+H+ ++  E AA +LF L P N A  YV ++NIY++   WD    +R  MKE  V 
Sbjct: 940  GACRIHQSVEFGEIAAKHLFVLEP-NVASHYVLMSNIYSSAGLWDQALGVRKKMKEMGVR 998

Query: 409  KMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEE 468
            K PG SWIE G  VH+F SGD  HP+   +HE L+ L +RM+  GYVPD+   LH V +E
Sbjct: 999  KEPGCSWIEHGDEVHKFLSGDASHPQSKELHEYLETLSQRMRKEGYVPDISCVLHNVDDE 1058

Query: 469  VKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDT 528
             KE +L  HSE+LAIAFGL+  P GT IRV KNLRVC DCH ATK IS I  REII+RD 
Sbjct: 1059 EKETMLCGHSERLAIAFGLLNTPPGTTIRVAKNLRVCNDCHVATKIISKIVDREIILRDV 1118

Query: 529  TRFHHFKDGTCSCGDYW 545
             RFHHF +GTCSCGDYW
Sbjct: 1119 RRFHHFANGTCSCGDYW 1135



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 92/363 (25%), Positives = 165/363 (45%), Gaps = 64/363 (17%)

Query: 54  DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKN------------- 100
           D+ AA   F  +P +D  SWN+MI+   + +    +  LF  M  +N             
Sbjct: 382 DLTAARQVFDDIPDRDHVSWNSMIATLCRFEEWELSLHLFRLMLSENVDPTSFTLVSVAH 441

Query: 101 --------------------------SVSWSAMISGYIECGQLDKAVELFKVAPVKSVVA 134
                                     + + +A+++ Y   G+++ A  LF V   K +V+
Sbjct: 442 ACSHVRGGVRLGKQVHAYTLRNGDLRTYTNNALVTMYARLGRVNDAKALFGVFDGKDLVS 501

Query: 135 WTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQV 194
           W  +IS        +N   E+ L  + +MI  G+RP+  +L+SVL  CS L  L++G+++
Sbjct: 502 WNTVISSLS-----QNDRFEEALMYVYLMIVDGVRPDGVTLASVLPACSQLERLRIGREI 556

Query: 195 HQLVFKS-PLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGK 253
           H    ++  L +++   T L+ MYC C   +    +F  + R+ V  WNA+++GYA++  
Sbjct: 557 HCYALRNGDLIENSFVGTALVDMYCNCKQPKKGRLVFDGVVRRTVAVWNALLAGYARNEF 616

Query: 254 GEKALRLFDKMKDEG-MKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK---- 308
            ++ALRLF +M  E    P++ TF ++L AC       +  + F      +G   K    
Sbjct: 617 DDQALRLFVEMISESEFCPNATTFASVLPAC-------VRCKVFSDKEGIHGYIVKRGFG 669

Query: 309 PDHY--TCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMN 366
            D Y    ++D+  R G++  +  +  +M  K     + T+++ C V  R D     A+N
Sbjct: 670 KDKYVQNALMDMYSRMGRVEISKTIFGRMN-KRDIVSWNTMITGCIVCGRYD----DALN 724

Query: 367 LFN 369
           L +
Sbjct: 725 LLH 727



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 62/201 (30%), Positives = 107/201 (53%), Gaps = 7/201 (3%)

Query: 93  FLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSW 152
           F   P  +    +++++ Y +CG L  A ++F   P +  V+W +MI+   +F      W
Sbjct: 359 FGHAPPSSVAVANSLVNMYGKCGDLTAARQVFDDIPDRDHVSWNSMIATLCRF----EEW 414

Query: 153 AEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHL-SSLQLGKQVHQLVFKSPLCKDTTALT 211
            E  L L R+M+   + P + +L SV   CSH+   ++LGKQVH    ++   +  T   
Sbjct: 415 -ELSLHLFRLMLSENVDPTSFTLVSVAHACSHVRGGVRLGKQVHAYTLRNGDLRTYTN-N 472

Query: 212 PLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKP 271
            L++MY + G + DA  LF     KD+V+WN +IS  +Q+ + E+AL     M  +G++P
Sbjct: 473 ALVTMYARLGRVNDAKALFGVFDGKDLVSWNTVISSLSQNDRFEEALMYVYLMIVDGVRP 532

Query: 272 DSITFVALLLACNHAGLVDLG 292
           D +T  ++L AC+    + +G
Sbjct: 533 DGVTLASVLPACSQLERLRIG 553



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 86/361 (23%), Positives = 157/361 (43%), Gaps = 43/361 (11%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK- 68
           N+ L     + G++ DA+ LF      D+VS+N ++S +  N D    A  +   + +  
Sbjct: 471 NNALVTMYARLGRVNDAKALFGVFDGKDLVSWNTVISSLSQN-DRFEEALMYVYLMIVDG 529

Query: 69  ---DTASWNTMISGFVQKKNMAKARDLFLAMPE-----KNSVSWSAMISGYIECGQLDKA 120
              D  +  +++    Q + +   R++           +NS   +A++  Y  C Q  K 
Sbjct: 530 VRPDGVTLASVLPACSQLERLRIGREIHCYALRNGDLIENSFVGTALVDMYCNCKQPKKG 589

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLG-IRPNASSLSSVL 179
             +F     ++V  W A+++GY +     N + +  L+L   MI      PNA++ +SVL
Sbjct: 590 RLVFDGVVRRTVAVWNALLAGYAR-----NEFDDQALRLFVEMISESEFCPNATTFASVL 644

Query: 180 LGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVV 239
             C         + +H  + K    KD      L+ MY + G +E +  +F  + ++D+V
Sbjct: 645 PACVRCKVFSDKEGIHGYIVKRGFGKDKYVQNALMDMYSRMGRVEISKTIFGRMNKRDIV 704

Query: 240 TWNAMISGYAQHGKGEKALRLFDKMK---------------DEG---MKPDSITFVALLL 281
           +WN MI+G    G+ + AL L  +M+               D+G    KP+S+T + +L 
Sbjct: 705 SWNTMITGCIVCGRYDDALNLLHEMQRRQGEDGSDTFVDYEDDGGVPFKPNSVTLMTVLP 764

Query: 282 ACNHAGLVDLGIQYFDSMVNDYGIAAKPDH----YTCMVDLLGRAGKLVEAVDLIKKMPF 337
            C  A L  LG       ++ Y +  K        + +VD+  + G L  A  +  +MP 
Sbjct: 765 GC--AALAALGK---GKEIHAYAVKQKLAMDVAVGSALVDMYAKCGCLNLASRVFDQMPI 819

Query: 338 K 338
           +
Sbjct: 820 R 820



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 48/125 (38%), Positives = 70/125 (56%), Gaps = 5/125 (4%)

Query: 174 SLSSVLLGCSHLSSLQLGKQVHQLVFK---SPLCKDTTALTPLISMYCKCGDLEDACKLF 230
           +  +VL   + +  L LGKQ+H  VFK   +P      A   L++MY KCGDL  A ++F
Sbjct: 332 AFPAVLKAAAAVHDLCLGKQIHAHVFKFGHAPPSSVAVA-NSLVNMYGKCGDLTAARQVF 390

Query: 231 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHA-GLV 289
            +I  +D V+WN+MI+   +  + E +L LF  M  E + P S T V++  AC+H  G V
Sbjct: 391 DDIPDRDHVSWNSMIATLCRFEEWELSLHLFRLMLSENVDPTSFTLVSVAHACSHVRGGV 450

Query: 290 DLGIQ 294
            LG Q
Sbjct: 451 RLGKQ 455


>gi|147801171|emb|CAN62238.1| hypothetical protein VITISV_014689 [Vitis vinifera]
          Length = 957

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 228/617 (36%), Positives = 335/617 (54%), Gaps = 84/617 (13%)

Query: 6   TVNWNSVLAGFAKQRGKLKDA----QELFDKIPQPDVVSYNIMLSCIL------------ 49
           T++WNS+L+GF  Q G   +A     E+ D   +PD+V+   +++               
Sbjct: 348 TISWNSMLSGFV-QNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLHGMQIH 406

Query: 50  -------LNSD--------DVVAAFD-------FFQRLPIKDTASWNTMISGFVQKKNMA 87
                  L+SD        D+ A F         F ++P KD  SW T+I+G  Q  + +
Sbjct: 407 AYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHS 466

Query: 88  KARDLF-------------------LAMPEKNSVSWSAMISGYI---------------- 112
           +A +LF                   LA      +S    I  YI                
Sbjct: 467 RALELFREVQLEGIDLDVMMISSILLACSGLKLISSVKEIHSYIIRKGLSDLVLQNGIVD 526

Query: 113 ---ECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIR 169
              ECG +D A  +F++   K VV+WT+MIS Y     V N  A + L+L  +M   G+ 
Sbjct: 527 VYGECGNVDYAARMFELIEFKDVVSWTSMISCY-----VHNGLANEALELFHLMKETGVE 581

Query: 170 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 229
           P++ SL S+L   + LS+L+ GK++H  + +     + +  + L+ MY +CG LE +  +
Sbjct: 582 PDSISLVSILSAAASLSALKKGKEIHGFLIRKGFVLEGSLASTLVDMYARCGTLEKSRNV 641

Query: 230 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLV 289
           F  I+ KD+V W +MI+ Y  HG G  A+ LF +M+DE + PD I FVA+L AC+H+GL+
Sbjct: 642 FNFIRNKDLVLWTSMINAYGMHGCGRAAIDLFRRMEDESIAPDHIAFVAVLYACSHSGLM 701

Query: 290 DLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLS 349
           + G ++ +SM  +Y +   P+HY C+VDLLGRA  L EA   +K M  +P   ++  LL 
Sbjct: 702 NEGRRFLESMKYEYQLEPWPEHYACLVDLLGRANHLEEAYQFVKGMEVEPTAEVWCALLG 761

Query: 350 ACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVK 409
           AC++H   +L E AA  L  ++P N  G YV ++N+Y+A ++W DV  +R+ MK + + K
Sbjct: 762 ACQIHSNKELGEIAAQKLLEMDPEN-PGNYVLVSNVYSAERRWKDVEXVRMRMKASGLKK 820

Query: 410 MPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKEL-EKRMKLAGYVPDLEFALHAVGEE 468
            PG SWIEVG  VH F + D+ HP+   I+ KL ++ EK  K  GYV   +F LH   EE
Sbjct: 821 NPGCSWIEVGNKVHTFMARDKSHPQSYEIYSKLSQITEKLAKEGGYVAQTKFVLHNAKEE 880

Query: 469 VKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDT 528
            K Q+L  HSE+LAIA+G++  P G  +R+ KNLRVCGDCH   K IS   +RE+++RD 
Sbjct: 881 EKVQMLYGHSERLAIAYGMLTTPEGASLRITKNLRVCGDCHNFCKLISKFFERELVMRDA 940

Query: 529 TRFHHFKDGTCSCGDYW 545
            RFHHFK G CSCGD W
Sbjct: 941 NRFHHFKGGVCSCGDVW 957



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 79/265 (29%), Positives = 128/265 (48%), Gaps = 24/265 (9%)

Query: 83  KKNMAKARDLFLAMPEKNSVSWSAMISG-----YIECGQLDKAVELFKVAPVKSVVAWTA 137
           KK +++ + +   M   N++  S  +S      Y +CG L  A +LF   P K++  W A
Sbjct: 91  KKALSEGQQVHAHMITSNALFNSVFLSTRLVFMYGKCGCLVDAEKLFDGMPHKTIFTWNA 150

Query: 138 MISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQL 197
           MI       YV N      L+L R M   GI  +A +   +L  C  L   + G +VH L
Sbjct: 151 MIG-----AYVTNGEPLGSLELYREMRVSGIPLDACTFPCILKACGLLKDRRYGAEVHGL 205

Query: 198 VFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI-QRKDVVTWNAMISGYAQHGKGEK 256
             K            ++ MY KC DL  A +LF  + +++DVV+WN+MIS Y+ +G+  +
Sbjct: 206 AIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSSNGQSIE 265

Query: 257 ALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY---- 312
           ALRLF +M+   + P++ TFVA L AC  +  +  G+    +++       K  +Y    
Sbjct: 266 ALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIHATVL-------KSSYYINVF 318

Query: 313 --TCMVDLLGRAGKLVEAVDLIKKM 335
               ++ +  R GK+ EA ++   M
Sbjct: 319 VANALIAMYARFGKMGEAANIFYNM 343



 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 71/283 (25%), Positives = 139/283 (49%), Gaps = 15/283 (5%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK----DTASWNTM 76
           G L DA++LFD +P   + ++N M+   + N + +  + + ++ + +     D  ++  +
Sbjct: 128 GCLVDAEKLFDGMPHKTIFTWNAMIGAYVTNGEPL-GSLELYREMRVSGIPLDACTFPCI 186

Query: 77  ISGFVQKKNMAKARDLFLAMPEKNSVSW----SAMISGYIECGQLDKAVELFKVAPVKS- 131
           +      K+     ++     ++  VS     ++++  Y +C  L+ A +LF   P K  
Sbjct: 187 LKACGLLKDRRYGAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKED 246

Query: 132 VVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLG 191
           VV+W +MIS Y       N  + + L+L   M    + PN  +  + L  C   S ++ G
Sbjct: 247 VVSWNSMISAYSS-----NGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQG 301

Query: 192 KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQH 251
             +H  V KS    +      LI+MY + G + +A  +F  +   D ++WN+M+SG+ Q+
Sbjct: 302 MFIHATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQN 361

Query: 252 GKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ 294
           G   +AL+ + +M+D G KPD +  ++++ A   +G    G+Q
Sbjct: 362 GLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLHGMQ 404



 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 93/370 (25%), Positives = 173/370 (46%), Gaps = 23/370 (6%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQ-PDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK 68
           NS++  + K    L  A++LFD++P+  DVVS+N M+S    N   + A   F +     
Sbjct: 219 NSIVGMYTKCN-DLNGARQLFDRMPEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQKAS 277

Query: 69  DTASWNTMI--------SGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
              +  T +        S F+ K+ M     +  +    N    +A+I+ Y   G++ +A
Sbjct: 278 LAPNTYTFVAALQACEDSSFI-KQGMFIHATVLKSSYYINVFVANALIAMYARFGKMGEA 336

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLL 180
             +F        ++W +M+SG+     V+N    + L+    M   G +P+  ++ S++ 
Sbjct: 337 ANIFYNMDDWDTISWNSMLSGF-----VQNGLYHEALQFYHEMRDAGQKPDLVAVISIIA 391

Query: 181 GCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVT 240
             +   +   G Q+H    K+ L  D      L+ MY K   ++    +F ++  KDVV+
Sbjct: 392 ASARSGNTLHGMQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVS 451

Query: 241 WNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV 300
           W  +I+G+AQ+G   +AL LF +++ EG+  D +   ++LLAC+   L+   ++   S +
Sbjct: 452 WTTIIAGHAQNGSHSRALELFREVQLEGIDLDVMMISSILLACSGLKLIS-SVKEIHSYI 510

Query: 301 NDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLA 360
              G++        +VD+ G  G +  A  + + + FK    +  T + +C VH  L   
Sbjct: 511 IRKGLSDLVLQ-NGIVDVYGECGNVDYAARMFELIEFK--DVVSWTSMISCYVHNGL--- 564

Query: 361 EFAAMNLFNL 370
              A+ LF+L
Sbjct: 565 ANEALELFHL 574



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 59/184 (32%), Positives = 92/184 (50%), Gaps = 14/184 (7%)

Query: 174 SLSSVLLGCSHLSSLQLGKQVH-QLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLE 232
           + SSVL  C    +L  G+QVH  ++  + L       T L+ MY KCG L DA KLF  
Sbjct: 80  AYSSVLELCGSKKALSEGQQVHAHMITSNALFNSVFLSTRLVFMYGKCGCLVDAEKLFDG 139

Query: 233 IQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 292
           +  K + TWNAMI  Y  +G+   +L L+ +M+  G+  D+ TF  +L AC   GL  L 
Sbjct: 140 MPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILKAC---GL--LK 194

Query: 293 IQYFDSMVNDYGIAAKPDHYT------CMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGT 346
            + + + V  +G+A K  + +       +V +  +   L  A  L  +MP K     + +
Sbjct: 195 DRRYGAEV--HGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNS 252

Query: 347 LLSA 350
           ++SA
Sbjct: 253 MISA 256


>gi|225465296|ref|XP_002268999.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Vitis vinifera]
          Length = 729

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 221/553 (39%), Positives = 333/553 (60%), Gaps = 20/553 (3%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLN--SDDVVAA 58
           M  +  + W +++ G+AK +  L+ A+  FD +P+  VVS+N MLS    N  +++ +  
Sbjct: 189 MPERNVITWTAMVTGYAKVK-DLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEALRL 247

Query: 59  FDFFQRLPIK-DTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISGYIE 113
           FD      I+ D  +W T+IS    + +   A  L   + +K    N    +A++  Y +
Sbjct: 248 FDEMVNAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKRIQLNCFVRTALLDMYAK 307

Query: 114 CGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI-GLGIRPNA 172
            G LD A +LF   P ++VV W +MI+GY      +N  +   ++L + MI    + P+ 
Sbjct: 308 FGDLDSARKLFNTMPGRNVVTWNSMIAGY-----AQNGQSAMAIELFKEMITAKKLTPDE 362

Query: 173 SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLE 232
            ++ SV+  C HL +L+LG  V + + ++ +    +    +I MY +CG +EDA ++F E
Sbjct: 363 VTMVSVISACGHLGALELGNWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQE 422

Query: 233 IQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 292
           +  +DVV++N +ISG+A HG G +A+ L   MK+ G++PD +TF+ +L AC+HAGL++ G
Sbjct: 423 MATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHAGLLEEG 482

Query: 293 IQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACR 352
            + F+S + D  I    DHY CMVDLLGR G+L +A   +++MP +P   ++G+LL+A R
Sbjct: 483 RKVFES-IKDPAI----DHYACMVDLLGRVGELEDAKRTMERMPMEPHAGVYGSLLNASR 537

Query: 353 VHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPG 412
           +HK+++L E AA  LF L P N+ G ++ L+NIYA+  +W DV RIR +MK+  V K  G
Sbjct: 538 IHKQVELGELAANKLFELEPDNS-GNFILLSNIYASAGRWKDVERIREAMKKGGVKKTTG 596

Query: 413 YSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQ 472
           +SW+E G  +H+F   DR H     I++ L EL K+M+ AGY+ D    L  V EE KE+
Sbjct: 597 WSWVEYGGKLHKFIVADRSHERSDDIYQLLIELRKKMREAGYIADKSCVLRDVEEEEKEE 656

Query: 473 LLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFH 532
           ++  HSEKLAI + L+    G  IRV KNLRVC DCH A K IS +E R IIVRD  RFH
Sbjct: 657 IVGTHSEKLAICYALLVSEAGAVIRVVKNLRVCWDCHTAIKMISKLEGRVIIVRDNNRFH 716

Query: 533 HFKDGTCSCGDYW 545
            F DG CSC DYW
Sbjct: 717 CFNDGLCSCKDYW 729



 Score =  169 bits (427), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 94/296 (31%), Positives = 163/296 (55%), Gaps = 10/296 (3%)

Query: 62  FQRLP--IKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDK 119
           F  +P   +  A WN M+SG+ + ++  +A+ LF  MPE+N ++W+AM++GY +   L+ 
Sbjct: 153 FDEIPDYERKVADWNAMVSGYWKWESEGQAQWLFDVMPERNVITWTAMVTGYAKVKDLEA 212

Query: 120 AVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVL 179
           A   F   P +SVV+W AM+S     GY +N  AE+ L+L   M+  GI P+ ++  +V+
Sbjct: 213 ARRYFDCMPERSVVSWNAMLS-----GYAQNGLAEEALRLFDEMVNAGIEPDETTWVTVI 267

Query: 180 LGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVV 239
             CS      L   + + + +  +  +    T L+ MY K GDL+ A KLF  +  ++VV
Sbjct: 268 SACSSRGDPCLAASLVRTLHQKRIQLNCFVRTALLDMYAKFGDLDSARKLFNTMPGRNVV 327

Query: 240 TWNAMISGYAQHGKGEKALRLFDKM-KDEGMKPDSITFVALLLACNHAGLVDLGIQYFDS 298
           TWN+MI+GYAQ+G+   A+ LF +M   + + PD +T V+++ AC H G ++LG  +   
Sbjct: 328 TWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALELG-NWVVR 386

Query: 299 MVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVH 354
            + +  I      +  M+ +  R G + +A  + ++M  +   + + TL+S    H
Sbjct: 387 FLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATRDVVS-YNTLISGFAAH 441



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 72/281 (25%), Positives = 110/281 (39%), Gaps = 81/281 (28%)

Query: 123 LFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRM---MIGLGIRPNASSLSSVL 179
           LF      +V  +T+M+  Y        S  +D  K++ M   M G G+RP+A  +  +L
Sbjct: 56  LFNSTLNPNVFVFTSMLRFY--------SHLQDHAKVVLMYEQMQGCGVRPDAF-VYPIL 106

Query: 180 LGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI---QRK 236
           +     S+   G   H  V K     D      +I MY + G +  A K+F EI   +RK
Sbjct: 107 IK----SAGTGGIGFHAHVLKLGHGSDAFVRNAVIDMYARLGPIGHARKVFDEIPDYERK 162

Query: 237 ------------------------------DVVTW------------------------- 241
                                         +V+TW                         
Sbjct: 163 VADWNAMVSGYWKWESEGQAQWLFDVMPERNVITWTAMVTGYAKVKDLEAARRYFDCMPE 222

Query: 242 ------NAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQY 295
                 NAM+SGYAQ+G  E+ALRLFD+M + G++PD  T+V ++ AC+  G   L    
Sbjct: 223 RSVVSWNAMLSGYAQNGLAEEALRLFDEMVNAGIEPDETTWVTVISACSSRGDPCLAASL 282

Query: 296 FDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 336
             ++ +   I       T ++D+  + G L  A  L   MP
Sbjct: 283 VRTL-HQKRIQLNCFVRTALLDMYAKFGDLDSARKLFNTMP 322


>gi|449458534|ref|XP_004147002.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 989

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 217/554 (39%), Positives = 307/554 (55%), Gaps = 23/554 (4%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLS----CILLNSDDVVAAF 59
           +T V  ++ L     + G + D  +L++ +   D++S+N  LS    C + +    +   
Sbjct: 447 ETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLHDCGMYDRPLTI--- 503

Query: 60  DFFQRLPIKDTASWNTMISGF--------VQKKNMAKARDLFLAMPEKNSVSWSAMISGY 111
            F+  L      +  T IS          V       A  +   + + N V  +A+I  Y
Sbjct: 504 -FYHMLEEGFIPNMYTFISILGSCSCLFDVHYGRQVHAHIIKNQLDDNNFVC-TALIDMY 561

Query: 112 IECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPN 171
            +C  L+ A   F    V+ +  WT +I+ Y      + +  E  L   R M   G++PN
Sbjct: 562 AKCMYLEDADVAFNRLSVRDLFTWTVIITNY-----AQTNQGEKALNYFRQMQQEGVKPN 616

Query: 172 ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFL 231
             +L+  L GCS L+SL+ G+Q+H +VFKS    D    + L+ MY KCG +E+A  LF 
Sbjct: 617 EFTLAGCLSGCSSLASLEGGQQLHSMVFKSGHVSDMFVGSALVDMYAKCGCMEEAEALFE 676

Query: 232 EIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDL 291
            + R+D + WN +I GYAQ+G+G KAL  F  M DEG+ PD +TF  +L AC+H GLV+ 
Sbjct: 677 ALIRRDTIAWNTIICGYAQNGQGNKALTAFRMMLDEGISPDGVTFTGILSACSHQGLVEE 736

Query: 292 GIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSAC 351
           G ++F+SM  D+GI+   DH  CMVD+LGR GK  E  D I+KM       I+ T+L A 
Sbjct: 737 GKEHFNSMYRDFGISPTVDHCACMVDILGRVGKFDELEDFIQKMQLSQNALIWETVLGAS 796

Query: 352 RVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMP 411
           ++H  L L E AA  LF L P   +  Y+ L+NI+A   +WDDV R+R  M    V K P
Sbjct: 797 KMHNNLVLGEKAANKLFELQPEEESS-YILLSNIFATEGRWDDVKRVRSLMSSKGVKKEP 855

Query: 412 GYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKE 471
           G SW+E    VH F S D  HP++  IH KL EL++ +    YVP  E+ LH VGE  K+
Sbjct: 856 GCSWVEANGQVHTFVSHDYSHPQIQEIHLKLDELDRELASIQYVPKTEYVLHNVGETEKK 915

Query: 472 QLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRF 531
           + L FHSE+LA+ F LI       IR+FKNLR+C DCH   K+IS+I  +EI+VRD  RF
Sbjct: 916 ENLRFHSERLALGFALISTSSEKKIRIFKNLRICRDCHDVMKHISSITNQEIVVRDVRRF 975

Query: 532 HHFKDGTCSCGDYW 545
           HHFK+G CSC D+W
Sbjct: 976 HHFKNGACSCNDFW 989



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 85/319 (26%), Positives = 151/319 (47%), Gaps = 15/319 (4%)

Query: 25  DAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDT----ASWNTMISGF 80
           DA  +F  I +PD+V ++ +++C L        +   F  + + DT     +  +++S  
Sbjct: 367 DAIGVFKTIKKPDIVVWSALITC-LDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAA 425

Query: 81  VQKKNMAKARDLFLAM----PEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWT 136
               N+   + +   +     E +    +A+++ Y++ G +    +L++    + +++W 
Sbjct: 426 TNTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWN 485

Query: 137 AMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQ 196
           A +SG    G  +       L +   M+  G  PN  +  S+L  CS L  +  G+QVH 
Sbjct: 486 AYLSGLHDCGMYDRP-----LTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYGRQVHA 540

Query: 197 LVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEK 256
            + K+ L  +    T LI MY KC  LEDA   F  +  +D+ TW  +I+ YAQ  +GEK
Sbjct: 541 HIIKNQLDDNNFVCTALIDMYAKCMYLEDADVAFNRLSVRDLFTWTVIITNYAQTNQGEK 600

Query: 257 ALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMV 316
           AL  F +M+ EG+KP+  T    L  C+    ++ G Q   SMV   G  +     + +V
Sbjct: 601 ALNYFRQMQQEGVKPNEFTLAGCLSGCSSLASLE-GGQQLHSMVFKSGHVSDMFVGSALV 659

Query: 317 DLLGRAGKLVEAVDLIKKM 335
           D+  + G + EA  L + +
Sbjct: 660 DMYAKCGCMEEAEALFEAL 678



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 73/246 (29%), Positives = 126/246 (51%), Gaps = 7/246 (2%)

Query: 104 WSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMM 163
           W ++++ Y +C     A  +    P + VV+WTA+I G +  G+     A D + L + M
Sbjct: 150 WVSLVNVYAKCRYSAYARLVLAKMPDRDVVSWTALIQGLVAEGF-----ANDSIYLFQEM 204

Query: 164 IGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDL 223
              GI PN  +L++ L  CS   +L LGKQ+H   FK  L  D    + L+ +Y KCG++
Sbjct: 205 QNEGIMPNEFTLATGLKACSLCMALDLGKQMHAQAFKLGLLLDLFVGSALVDLYAKCGEI 264

Query: 224 EDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC 283
           E A K+F+ +  ++ VTWN +++GYAQ G     L+LF  M +  +K +  T   +L  C
Sbjct: 265 ELASKMFIGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGC 324

Query: 284 NHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAI 343
            ++  +  G Q   S++   G          +VD+  + G  ++A+ + K +  KP   +
Sbjct: 325 ANSKNLKQG-QVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIK-KPDIVV 382

Query: 344 FGTLLS 349
           +  L++
Sbjct: 383 WSALIT 388



 Score =  108 bits (269), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 91/348 (26%), Positives = 167/348 (47%), Gaps = 25/348 (7%)

Query: 3   VKTTVN-----WNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLN--SDDV 55
           VK  +N     W S++  +AK R     A+ +  K+P  DVVS+  ++  ++    ++D 
Sbjct: 139 VKDVINPDSHLWVSLVNVYAKCRYSAY-ARLVLAKMPDRDVVSWTALIQGLVAEGFANDS 197

Query: 56  VAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK--------NSVSWSAM 107
           +  F   Q   I       T+ +G ++  ++  A DL   M  +        +    SA+
Sbjct: 198 IYLFQEMQNEGIMPNEF--TLATG-LKACSLCMALDLGKQMHAQAFKLGLLLDLFVGSAL 254

Query: 108 ISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLG 167
           +  Y +CG+++ A ++F   P ++ V W  +++GY + G V        LKL   M+ L 
Sbjct: 255 VDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQRGDVTGV-----LKLFCSMMELD 309

Query: 168 IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC 227
           ++ N  +L++VL GC++  +L+ G+ +H L+ K     +      L+ MY KCG   DA 
Sbjct: 310 VKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAI 369

Query: 228 KLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG 287
            +F  I++ D+V W+A+I+   Q G+ E++++LF  M+     P+  T  +LL A  + G
Sbjct: 370 GVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTG 429

Query: 288 LVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335
            +  G Q   + V  YG          +V +  + G + +   L + M
Sbjct: 430 NLQYG-QSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESM 476



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 79/161 (49%), Gaps = 1/161 (0%)

Query: 176 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR 235
           SS+L  C+   SL + K +H L+ K  +  D+     L+++Y KC     A  +  ++  
Sbjct: 116 SSMLRECASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVLAKMPD 175

Query: 236 KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQY 295
           +DVV+W A+I G    G    ++ LF +M++EG+ P+  T    L AC+    +DLG Q 
Sbjct: 176 RDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQ- 234

Query: 296 FDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 336
             +     G+       + +VDL  + G++  A  +   MP
Sbjct: 235 MHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMP 275



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 56/285 (19%), Positives = 115/285 (40%), Gaps = 60/285 (21%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           ++V+    W  ++  +A Q  + + A   F ++ Q  V      L+  L     + A+ +
Sbjct: 577 LSVRDLFTWTVIITNYA-QTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGCSSL-ASLE 634

Query: 61  FFQRLP--------IKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYI 112
             Q+L         + D    + ++  + +   M +A  LF A+  +++++W+ +I GY 
Sbjct: 635 GGQQLHSMVFKSGHVSDMFVGSALVDMYAKCGCMEEAEALFEALIRRDTIAWNTIICGYA 694

Query: 113 ECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNA 172
           + GQ +KA+  F                                    RMM+  GI P+ 
Sbjct: 695 QNGQGNKALTAF------------------------------------RMMLDEGISPDG 718

Query: 173 SSLSSVLLGCSHLSSLQLGKQVHQLVFK----SPLCKDTTALTPLISMYCKCGDLEDACK 228
            + + +L  CSH   ++ GK+    +++    SP       +  ++    K  +LED   
Sbjct: 719 VTFTGILSACSHQGLVEEGKEHFNSMYRDFGISPTVDHCACMVDILGRVGKFDELED--- 775

Query: 229 LFLEIQR--KDVVTWNAMISGYAQHGK---GEKAL-RLFDKMKDE 267
            F++  +  ++ + W  ++     H     GEKA  +LF+   +E
Sbjct: 776 -FIQKMQLSQNALIWETVLGASKMHNNLVLGEKAANKLFELQPEE 819


>gi|356511287|ref|XP_003524358.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Glycine max]
          Length = 674

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 210/533 (39%), Positives = 330/533 (61%), Gaps = 15/533 (2%)

Query: 22  KLKDAQELFDKIPQPDVVSYNIMLSCILLNS--DDVVAAFDFFQRLPIK-DTASWNTMIS 78
           K+   ++LFD++P  DVVS+N +++    N   ++ +       +  ++ D+ + ++++ 
Sbjct: 148 KIDSVRKLFDRMPVRDVVSWNTVIAGNAQNGMYEEALNMVKEMGKENLRPDSFTLSSILP 207

Query: 79  GFVQKKNMAKARDLF-LAMP---EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVA 134
            F +  N+ K +++   A+    +K+    S++I  Y +C Q++ +V  F +   +  ++
Sbjct: 208 IFTEHANVTKGKEIHGYAIRHGFDKDVFIGSSLIDMYAKCTQVELSVCAFHLLSNRDAIS 267

Query: 135 WTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQV 194
           W ++I+G      V+N   + GL   R M+   ++P   S SSV+  C+HL++L LGKQ+
Sbjct: 268 WNSIIAGC-----VQNGRFDQGLGFFRRMLKEKVKPMQVSFSSVIPACAHLTALNLGKQL 322

Query: 195 HQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF--LEIQRKDVVTWNAMISGYAQHG 252
           H  + +     +    + L+ MY KCG+++ A  +F  +E+  +D+V+W A+I G A HG
Sbjct: 323 HAYIIRLGFDDNKFIASSLLDMYAKCGNIKMARYIFNKIEMCDRDMVSWTAIIMGCAMHG 382

Query: 253 KGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY 312
               A+ LF++M  +G+KP  + F+A+L AC+HAGLVD G +YF+SM  D+G+A   +HY
Sbjct: 383 HALDAVSLFEEMLVDGVKPCYVAFMAVLTACSHAGLVDEGWKYFNSMQRDFGVAPGLEHY 442

Query: 313 TCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNP 372
             + DLLGRAG+L EA D I  M  +P  +++ TLL+ACR HK ++LAE     +  ++P
Sbjct: 443 AAVADLLGRAGRLEEAYDFISNMGEEPTGSVWSTLLAACRAHKNIELAEKVVNKILLVDP 502

Query: 373 ANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVH 432
            N  G +V ++NIY+A ++W D A++R+ M++  + K P  SWIEVG  VH F +GD+ H
Sbjct: 503 GNM-GAHVIMSNIYSAAQRWRDAAKLRVRMRKTGLKKTPACSWIEVGNKVHTFLAGDKSH 561

Query: 433 PELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPL 492
           P    I+E L  L ++M+  GYV D    LH V EE K  LL  HSE+LAIAFG+I    
Sbjct: 562 PYYDKINEALNILLEQMEKEGYVLDTNEVLHDVDEEHKRDLLRTHSERLAIAFGIISTTS 621

Query: 493 GTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           GT IRV KN+RVC DCH A K+++ I  REIIVRD +RFHHFK+G+CSCGDYW
Sbjct: 622 GTTIRVIKNIRVCVDCHTAIKFMAKIVGREIIVRDNSRFHHFKNGSCSCGDYW 674


>gi|224080790|ref|XP_002306231.1| predicted protein [Populus trichocarpa]
 gi|222849195|gb|EEE86742.1| predicted protein [Populus trichocarpa]
          Length = 480

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 193/442 (43%), Positives = 286/442 (64%), Gaps = 7/442 (1%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI 164
           +A++  Y++ G +D+A ++F+    K +VAW+AMI GY + G  E +     +++   M 
Sbjct: 45  TALLDAYVKRGNVDEASKVFQRIEEKDIVAWSAMICGYAQIGDTEGA-----VRIFVQMA 99

Query: 165 GLGIRPNASSLSSVLLGCSH-LSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDL 223
              I+PN  + S ++  C+   + ++ GKQ+H    KS         + L++MY K GD+
Sbjct: 100 KEKIKPNEYTFSGIINACAAPTAGVEQGKQLHAWSIKSRFNNALCVSSALLTMYSKRGDI 159

Query: 224 EDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC 283
           E A ++F   + +D+V+WN++ISGYAQHG G KAL +F++M+ + ++ D +TF+ ++ AC
Sbjct: 160 ESAFEVFKRQRERDLVSWNSIISGYAQHGYGRKALEVFEEMQRQNLEMDGVTFIGVISAC 219

Query: 284 NHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAI 343
            H GL + G +YFD MV D+ I  + +HY+CMVDL GRAG LV+A+++I +MPF     +
Sbjct: 220 THTGLANEGQRYFDIMVKDHHIEPRMEHYSCMVDLYGRAGMLVKAMEIINEMPFPASANV 279

Query: 344 FGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMK 403
           + TLL+A  +H+ L++ + AA  L +L P N A  YV L N+YA++  W + A++R  M+
Sbjct: 280 WRTLLAASCIHRNLEVGKLAADKLISLQPQNPAS-YVLLTNMYASVGNWKERAKVRKLME 338

Query: 404 ENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALH 463
           E  V K+ GYSWIEV    + F +GD  HP    I+ KL+EL  ++K AGY PD  +   
Sbjct: 339 EKKVKKVAGYSWIEVKNKTYTFLAGDVSHPLSNQIYAKLEELSCQLKGAGYQPDTSYVFQ 398

Query: 464 AVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREI 523
            V EE KE +L  HSE+LAIAFGLI  P GTP+++ KNLRVCGDCH   K IS +E R+I
Sbjct: 399 DVDEEHKEAILSQHSERLAIAFGLIGTPPGTPLQIVKNLRVCGDCHSVIKLISILEGRDI 458

Query: 524 IVRDTTRFHHFKDGTCSCGDYW 545
           +VRD+ RFHHFK G CSCGDYW
Sbjct: 459 VVRDSNRFHHFKGGLCSCGDYW 480



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 43/117 (36%), Positives = 67/117 (57%), Gaps = 4/117 (3%)

Query: 167 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 226
           GI+PN  + S++L     +S  ++    H    K    K  +  T L+  Y K G++++A
Sbjct: 5   GIKPNDFTYSTILTAQPGVSPFEM----HAQAIKRNYVKSPSVGTALLDAYVKRGNVDEA 60

Query: 227 CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC 283
            K+F  I+ KD+V W+AMI GYAQ G  E A+R+F +M  E +KP+  TF  ++ AC
Sbjct: 61  SKVFQRIEEKDIVAWSAMICGYAQIGDTEGAVRIFVQMAKEKIKPNEYTFSGIINAC 117



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 50/242 (20%), Positives = 104/242 (42%), Gaps = 19/242 (7%)

Query: 3   VKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFF 62
           VK+     ++L  + K RG + +A ++F +I + D+V+++ M+ C      D   A   F
Sbjct: 38  VKSPSVGTALLDAYVK-RGNVDEASKVFQRIEEKDIVAWSAMI-CGYAQIGDTEGAVRIF 95

Query: 63  QRLPIKDTASWNTMISGF----------VQKKNMAKARDLFLAMPEKNSVSWSAMISGYI 112
            ++  +         SG           V++     A  +         VS SA+++ Y 
Sbjct: 96  VQMAKEKIKPNEYTFSGIINACAAPTAGVEQGKQLHAWSIKSRFNNALCVS-SALLTMYS 154

Query: 113 ECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNA 172
           + G ++ A E+FK    + +V+W ++ISGY + GY         L++   M    +  + 
Sbjct: 155 KRGDIESAFEVFKRQRERDLVSWNSIISGYAQHGY-----GRKALEVFEEMQRQNLEMDG 209

Query: 173 SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTA-LTPLISMYCKCGDLEDACKLFL 231
            +   V+  C+H      G++   ++ K    +      + ++ +Y + G L  A ++  
Sbjct: 210 VTFIGVISACTHTGLANEGQRYFDIMVKDHHIEPRMEHYSCMVDLYGRAGMLVKAMEIIN 269

Query: 232 EI 233
           E+
Sbjct: 270 EM 271



 Score = 44.3 bits (103), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 43/206 (20%), Positives = 93/206 (45%), Gaps = 24/206 (11%)

Query: 54  DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKN----SVSWSAMIS 109
           D+ +AF+ F+R   +D  SWN++ISG+ Q     KA ++F  M  +N     V++  +IS
Sbjct: 158 DIESAFEVFKRQRERDLVSWNSIISGYAQHGYGRKALEVFEEMQRQNLEMDGVTFIGVIS 217

Query: 110 GYIECGQLDKAVELFKVAPVKSVVA-----WTAMISGYMKFGYVENSWAEDGLKLLRMMI 164
                G  ++    F +      +      ++ M+  Y + G +        +K + ++ 
Sbjct: 218 ACTHTGLANEGQRYFDIMVKDHHIEPRMEHYSCMVDLYGRAGML--------VKAMEIIN 269

Query: 165 GLGIRPNASSLSSVLLGCSHLSSLQLGK-QVHQLVFKSPLCKDTTALTPLISMYCKCGDL 223
            +    +A+   ++L       +L++GK    +L+   P  ++  +   L +MY   G+ 
Sbjct: 270 EMPFPASANVWRTLLAASCIHRNLEVGKLAADKLISLQP--QNPASYVLLTNMYASVGNW 327

Query: 224 EDACKLFLEIQRKDVVTWNAMISGYA 249
           ++  K+   ++ K V      ++GY+
Sbjct: 328 KERAKVRKLMEEKKV----KKVAGYS 349


>gi|297844988|ref|XP_002890375.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336217|gb|EFH66634.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 760

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 216/551 (39%), Positives = 333/551 (60%), Gaps = 20/551 (3%)

Query: 7   VNWNSVLAGFAKQRGKLKDAQELFDKIPQ----PDVVSYNIMLSCI----LLNSDDVVAA 58
           V+WN +L+GF +  G  K+A  +F K+      PD V+ + +L  +     LN    +  
Sbjct: 218 VSWNGILSGFNRS-GYHKEAVIMFQKMHHLGFCPDQVTVSSVLPSVGDSENLNMGRQIHG 276

Query: 59  FDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLD 118
           +   Q L +KD    + M+  + +  ++     LF       +   +A I+G    G +D
Sbjct: 277 YVIKQGL-LKDKCVISAMLDMYGKSGHVYGIIKLFDEFEMMETGVCNAYITGLSRNGLVD 335

Query: 119 KAVELFKVAPVK----SVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASS 174
           KA+E+F +   +    +VV+WT++I+G       +N    + L+L R M   G++PN  +
Sbjct: 336 KALEMFGLFKEQKMELNVVSWTSIIAGC-----AQNGKDIEALELFREMQVAGVKPNRVT 390

Query: 175 LSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ 234
           + S+L  C ++++L  G+  H    +  L  D    + LI MY KCG ++ +  +F  + 
Sbjct: 391 IPSMLPACGNIAALGHGRSTHGFAVRVHLLDDVHVGSALIDMYAKCGRIKMSQIVFNMMP 450

Query: 235 RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ 294
            K++V WN++++GY+ HGK ++ + +F+ +    +KPD I+F +LL AC   GL D G +
Sbjct: 451 TKNLVCWNSLMNGYSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWK 510

Query: 295 YFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVH 354
           YF+ M  +YGI  + +HY+CMV+LLGRAGKL EA DLIK++PF+P   ++G LL++CR+ 
Sbjct: 511 YFNMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEIPFEPDSCVWGALLNSCRLQ 570

Query: 355 KRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYS 414
             +DLAE AA  LF+L P N  G YV ++NIYAA   W +V  IR  M+   + K PG S
Sbjct: 571 NNVDLAEIAAQKLFHLEPEN-PGTYVLMSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCS 629

Query: 415 WIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLL 474
           WI+V   V+   + D+ HP++  I EK+ E+ + M+ +G+ P+L+FAL  V E+ +EQ+L
Sbjct: 630 WIQVKNKVYTLLACDKSHPQIDQITEKMDEISEEMRKSGHRPNLDFALQDVEEQEQEQML 689

Query: 475 LFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHF 534
             HSEKLA+ FGL+  P GTP++V KNLR+CGDCH   K+IS+   REI +RDT RFHHF
Sbjct: 690 WGHSEKLAVVFGLLNTPDGTPLQVIKNLRICGDCHAVIKFISSYAGREIFIRDTNRFHHF 749

Query: 535 KDGTCSCGDYW 545
           KDG CSCGD+W
Sbjct: 750 KDGICSCGDFW 760



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 60/231 (25%), Positives = 108/231 (46%), Gaps = 9/231 (3%)

Query: 83  KKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGY 142
           K   A AR L         +S + +I+ Y      + A  + +  P  +V +++++I   
Sbjct: 33  KTTQAHARILKSGAQNDGYIS-AKLIASYSNYNCFNDADLILQSIPDPTVYSFSSLIYAL 91

Query: 143 MKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSP 202
            K      S     + +   M   G+ P+   L ++   C+ LS+ + GKQ+H +   S 
Sbjct: 92  TKAKLFSQS-----IGVFSRMFSHGLIPDTHVLPNLFKVCAELSAFKAGKQIHCVACVSG 146

Query: 203 LCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFD 262
           L  D      L  MY +CG + DA K+F  +  KDVVT +A++ GYA+ G  E+ +R+  
Sbjct: 147 LDMDAFVQGSLFHMYMRCGRMGDARKVFDRMSEKDVVTCSALLCGYARKGCLEEVVRILS 206

Query: 263 KMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYT 313
           +M+  G++P+ +++  +L   N +G     +  F  M   + +   PD  T
Sbjct: 207 EMEKSGIEPNIVSWNGILSGFNRSGYHKEAVIMFQKM---HHLGFCPDQVT 254


>gi|359476777|ref|XP_002278837.2| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
            repeat-containing protein At3g23330 [Vitis vinifera]
          Length = 1008

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 226/590 (38%), Positives = 326/590 (55%), Gaps = 62/590 (10%)

Query: 10   NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
            NS+L  + K R     A++LF  + + D VS+NIM+S   L   D+  + D F++LP KD
Sbjct: 427  NSILDYYVKCRC-FGYAEKLFGLMAEKDTVSWNIMMSS-YLQIGDMQKSVDLFRQLPGKD 484

Query: 70   TASWNTMISGFVQKKNMAKARDLFLAM----PEKNSVSWS-------------------- 105
             ASWNTMI G ++      A +L   M    P  N +++S                    
Sbjct: 485  AASWNTMIDGLMRNGCERVALELLYKMVAAGPAFNKLTFSIALVLASSLSVLGLGKQIHT 544

Query: 106  ---------------AMISGYIECGQLDKAVELFKVAPVKSV---------------VAW 135
                           ++I  Y +CG+++KA  +FK  P +S                V+W
Sbjct: 545  QVLKVGVLDDGFVRNSLIDMYCKCGEMEKASVIFKHLPQESSMMNSEESCDDAVVESVSW 604

Query: 136  TAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVH 195
            ++M+SGY     V+N   ED LK    MI   +  +  +L+SV+  C+    L+LG+QVH
Sbjct: 605  SSMVSGY-----VQNGRFEDALKTFSFMICSQVEVDKFTLTSVVSACASAGVLELGRQVH 659

Query: 196  QLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGE 255
              + K     D    + +I MY KCG L DA  +F + + ++VV W +MISG A HG+G 
Sbjct: 660  GYIQKIGHGLDVFLGSSIIDMYVKCGSLNDAWLIFNQAKDRNVVLWTSMISGCALHGQGR 719

Query: 256  KALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCM 315
            +A+RLF+ M +EG+ P+ ++FV +L AC+HAGL++ G +YF  M   YGI    +H+TCM
Sbjct: 720  EAVRLFELMINEGITPNEVSFVGVLTACSHAGLLEEGCKYFRLMREVYGIRPGAEHFTCM 779

Query: 316  VDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANA 375
            VDL GRAG+L E  + I         +++ + LS+CRVHK +++  +    L  L P + 
Sbjct: 780  VDLYGRAGRLNEIKEFIHNNAISKLSSVWRSFLSSCRVHKNIEMGIWVCKKLLELEPFD- 838

Query: 376  AGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPEL 435
            AG Y+  ++I A   +W++ A+IR  M++  V K P  SWI++   VH F  GDR HP+ 
Sbjct: 839  AGPYILFSSICATEHRWEEAAKIRSLMQQRGVKKNPSQSWIQLKNQVHSFVMGDRSHPQD 898

Query: 436  VSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTP 495
              I+  L EL  R+K  GY  D+   +  V +E ++ LL +HSEKLAIA+G+I    GTP
Sbjct: 899  TKIYSYLDELIGRLKEIGYSTDVTPVMQDVEQEQRQVLLGYHSEKLAIAYGIISTAPGTP 958

Query: 496  IRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
            IRV KNLRVC DCH   KY S +  REII+RD  RFHHFK G CSC DYW
Sbjct: 959  IRVMKNLRVCIDCHNFIKYASELLGREIIIRDIHRFHHFKHGHCSCADYW 1008



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 112/404 (27%), Positives = 190/404 (47%), Gaps = 62/404 (15%)

Query: 7   VNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCI--LLNSDDVVAAF----- 59
           +  N +L  +AK +  L+ A ++F++IPQ DV S+ +++S    +  S DV+  F     
Sbjct: 322 IRGNHLLNLYAKSQ-NLEQAHKMFEEIPQTDVFSWTVLISGFARIGLSADVLGLFTKMQD 380

Query: 60  ------DFFQRLPIKDTAS-------------W-------------NTMISGFVQKKNMA 87
                  F   + +K  +S             W             N+++  +V+ +   
Sbjct: 381 QGVCPNQFTLSIVLKSCSSNVNDSRIGKGIHGWILRNGLDLDAVLNNSILDYYVKCRCFG 440

Query: 88  KARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGY 147
            A  LF  M EK++VSW+ M+S Y++ G + K+V+LF+  P K   +W  MI G M+   
Sbjct: 441 YAEKLFGLMAEKDTVSWNIMMSSYLQIGDMQKSVDLFRQLPGKDAASWNTMIDGLMR--- 497

Query: 148 VENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDT 207
             N      L+LL  M+  G   N  + S  L+  S LS L LGKQ+H  V K  +  D 
Sbjct: 498 --NGCERVALELLYKMVAAGPAFNKLTFSIALVLASSLSVLGLGKQIHTQVLKVGVLDDG 555

Query: 208 TALTPLISMYCKCGDLEDACKLFLEIQRK---------------DVVTWNAMISGYAQHG 252
                LI MYCKCG++E A  +F  + ++               + V+W++M+SGY Q+G
Sbjct: 556 FVRNSLIDMYCKCGEMEKASVIFKHLPQESSMMNSEESCDDAVVESVSWSSMVSGYVQNG 615

Query: 253 KGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY 312
           + E AL+ F  M    ++ D  T  +++ AC  AG+++LG Q     +   G        
Sbjct: 616 RFEDALKTFSFMICSQVEVDKFTLTSVVSACASAGVLELGRQ-VHGYIQKIGHGLDVFLG 674

Query: 313 TCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKR 356
           + ++D+  + G L +A  LI          ++ +++S C +H +
Sbjct: 675 SSIIDMYVKCGSLNDAW-LIFNQAKDRNVVLWTSMISGCALHGQ 717



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 53/194 (27%), Positives = 92/194 (47%), Gaps = 38/194 (19%)

Query: 213 LISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPD 272
           L+++Y K  +LE A K+F EI + DV +W  +ISG+A+ G     L LF KM+D+G+ P+
Sbjct: 327 LLNLYAKSQNLEQAHKMFEEIPQTDVFSWTVLISGFARIGLSADVLGLFTKMQDQGVCPN 386

Query: 273 SITFVALLLACN------------HAGLVDLGIQYFDSMVND------------------ 302
             T   +L +C+            H  ++  G+   D+++N+                  
Sbjct: 387 QFTLSIVLKSCSSNVNDSRIGKGIHGWILRNGLD-LDAVLNNSILDYYVKCRCFGYAEKL 445

Query: 303 YGIAAKPD--HYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPA----IFGTLLSAC-RVHK 355
           +G+ A+ D   +  M+    + G + ++VDL +++P K   +    I G + + C RV  
Sbjct: 446 FGLMAEKDTVSWNIMMSSYLQIGDMQKSVDLFRQLPGKDAASWNTMIDGLMRNGCERVAL 505

Query: 356 RLDLAEFAAMNLFN 369
            L     AA   FN
Sbjct: 506 ELLYKMVAAGPAFN 519


>gi|28392910|gb|AAO41891.1| putative selenium-binding protein [Arabidopsis thaliana]
          Length = 630

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 214/535 (40%), Positives = 312/535 (58%), Gaps = 28/535 (5%)

Query: 23  LKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQR------LPIKDTASWNTM 76
           L DA +LFD++PQ +V+S+  M+S          +     Q+      L ++D    N  
Sbjct: 112 LNDAHQLFDQMPQRNVISWTTMIS--------AYSKCKIHQKALELLVLMLRDNVRPNVY 163

Query: 77  ISGFVQK--KNMAKARDLFLAMP----EKNSVSWSAMISGYIECGQLDKAVELFKVAPVK 130
               V +    M+  R L   +     E +    SA+I  + + G+ + A+ +F      
Sbjct: 164 TYSSVLRSCNGMSDVRMLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTG 223

Query: 131 SVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQL 190
             + W ++I G+      +NS ++  L+L + M   G     ++L+SVL  C+ L+ L+L
Sbjct: 224 DAIVWNSIIGGF-----AQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLEL 278

Query: 191 GKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQ 250
           G Q H  + K    +D      L+ MYCKCG LEDA ++F +++ +DV+TW+ MISG AQ
Sbjct: 279 GMQAHVHIVKYD--QDLILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQ 336

Query: 251 HGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPD 310
           +G  ++AL+LF++MK  G KP+ IT V +L AC+HAGL++ G  YF SM   YGI    +
Sbjct: 337 NGYSQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVRE 396

Query: 311 HYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNL 370
           HY CM+DLLG+AGKL +AV L+ +M  +P    + TLL ACRV + + LAE+AA  +  L
Sbjct: 397 HYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIAL 456

Query: 371 NPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDR 430
           +P +A G Y  L+NIYA  +KWD V  IR  M++  + K PG SWIEV   +H F  GD 
Sbjct: 457 DPEDA-GTYTLLSNIYANSQKWDSVEEIRTRMRDRGIKKEPGCSWIEVNKQIHAFIIGDN 515

Query: 431 VHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKV 490
            HP++V + +KL +L  R+   GYVP+  F L  +  E  E  L  HSEKLA+AFGL+ +
Sbjct: 516 SHPQIVEVSKKLNQLIHRLTGIGYVPETNFVLQDLEGEQMEDSLRHHSEKLALAFGLMTL 575

Query: 491 PLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           P+   IR+ KNLR+CGDCH   K  S +E R I++R   R+HHF+DG CSCGDYW
Sbjct: 576 PIEKVIRIRKNLRICGDCHVFCKLASKLEIRSIVIRGPIRYHHFQDGKCSCGDYW 630



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 76/272 (27%), Positives = 139/272 (51%), Gaps = 17/272 (6%)

Query: 69  DTASWNTMISGFVQKKNMAKA----RDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELF 124
           D+A+++ +I   +  + + +     R L+           + +I+ Y++   L+ A +LF
Sbjct: 60  DSATYSELIKCCISNRAVHEGNLICRHLYFNGHRPMMFLVNVLINMYVKFNLLNDAHQLF 119

Query: 125 KVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSH 184
              P ++V++WT MIS Y K         +  L+LL +M+   +RPN  + SSVL  C+ 
Sbjct: 120 DQMPQRNVISWTTMISAYSKCKI-----HQKALELLVLMLRDNVRPNVYTYSSVLRSCNG 174

Query: 185 LSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAM 244
           +S +++   +H  + K  L  D    + LI ++ K G+ EDA  +F E+   D + WN++
Sbjct: 175 MSDVRM---LHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSI 231

Query: 245 ISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN-DY 303
           I G+AQ+ + + AL LF +MK  G   +  T  ++L AC    L++LG+Q    +V  D 
Sbjct: 232 IGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVKYDQ 291

Query: 304 GIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335
            +         +VD+  + G L +A+ +  +M
Sbjct: 292 DLILN----NALVDMYCKCGSLEDALRVFNQM 319



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 62/243 (25%), Positives = 116/243 (47%), Gaps = 21/243 (8%)

Query: 16  FAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP----IKDTA 71
           FAK  G+ +DA  +FD++   D + +N ++     NS   V A + F+R+     I + A
Sbjct: 204 FAKL-GEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDV-ALELFKRMKRAGFIAEQA 261

Query: 72  SWNTMISGFVQKK--NMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPV 129
           +  +++          +     + +   +++ +  +A++  Y +CG L+ A+ +F     
Sbjct: 262 TLTSVLRACTGLALLELGMQAHVHIVKYDQDLILNNALVDMYCKCGSLEDALRVFNQMKE 321

Query: 130 KSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQ 189
           + V+ W+ MISG  + GY     +++ LKL   M   G +PN  ++  VL  CSH   L+
Sbjct: 322 RDVITWSTMISGLAQNGY-----SQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLLE 376

Query: 190 LG----KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ-RKDVVTWNAM 244
            G    + + +L    P+ +    +  L+    K G L+DA KL  E++   D VTW  +
Sbjct: 377 DGWYYFRSMKKLYGIDPVREHYGCMIDLLG---KAGKLDDAVKLLNEMECEPDAVTWRTL 433

Query: 245 ISG 247
           +  
Sbjct: 434 LGA 436


>gi|357129337|ref|XP_003566320.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Brachypodium distachyon]
          Length = 661

 Score =  400 bits (1028), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 223/586 (38%), Positives = 326/586 (55%), Gaps = 43/586 (7%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIP----QPDVVSYNIMLSCILLNS---D 53
           M  K  V W++++AG++  RG  + A  L +++     +P+V+++N ++S +  +    D
Sbjct: 78  MPEKNVVGWSALIAGYSA-RGDAEAAWGLLEQMRSAGVEPNVITWNGLVSGLNRSGRALD 136

Query: 54  DVVAAFDFFQRLPIKDTASWNTMIS--GFVQKKNMAKARDLFL--AMPEKNSVSWSAMIS 109
            V A           D    +  +S  G V++ ++ K    ++  A    ++   +A+I 
Sbjct: 137 AVTALVRMHSEGFFPDATGVSCALSAVGDVKEVSVGKQVHGYVVKAGCRLDACVVTALID 196

Query: 110 GYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVEN------------------S 151
            Y +CG+ D+ V +F  +    V +  A+++G  +   V                    S
Sbjct: 197 MYGKCGRADEIVRVFHESSHMDVASCNALVAGLSRNAQVSEALLLFREFICRGVELNVVS 256

Query: 152 WAE------------DGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVF 199
           W              + + L R M  +G+ PN+ ++  VL   +++++L  G+  H    
Sbjct: 257 WTSIVACCVQNGRDLEAVDLFRTMQSIGVEPNSVTIPCVLPAFANVAALMHGRSAHCFSL 316

Query: 200 KSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALR 259
           +     D    + L+ MY KCG    A  +F  +  ++VV+WNAMI GYA HG    A++
Sbjct: 317 RKGFLHDVYVGSALVDMYAKCGKARHARTIFDAMPSRNVVSWNAMIGGYAMHGDAANAVQ 376

Query: 260 LFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLL 319
           LF  M+    KPD +TF  +L AC+ AGL + G +YF+ M   +GI+ + +HY CMV LL
Sbjct: 377 LFCSMQKCKQKPDLVTFTCVLGACSQAGLTEEGRRYFNEMQQGHGISPRMEHYACMVTLL 436

Query: 320 GRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCY 379
           GR+GKL EA DLI +MPF+P   I+G+LL +CRV+  + LAE AA  LF L P NA G Y
Sbjct: 437 GRSGKLDEAYDLINEMPFEPDSCIWGSLLGSCRVYGNVLLAEVAAEKLFQLEPGNA-GNY 495

Query: 380 VQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIH 439
           V L+NIYA+ K WD V R+R  MK   + K  G SWIE+   VH   +GD  HP + +I 
Sbjct: 496 VLLSNIYASKKMWDGVNRVRDEMKNMGLKKEKGCSWIEIKNKVHMLLAGDNSHPMMTAIT 555

Query: 440 EKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVF 499
           EKL +L   M   G+ P  +F LH V E+ K+ +L  HSEKLA+A GLI    GTP+RV 
Sbjct: 556 EKLNQLTIEMNRLGFAPSRDFVLHDVEEQEKDNILAVHSEKLAVALGLISTRPGTPLRVI 615

Query: 500 KNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           KNLR+CGDCH A K+IS+ E+REI VRDT RFHHFKDG CSCGDYW
Sbjct: 616 KNLRICGDCHEAMKFISSFEQREISVRDTNRFHHFKDGKCSCGDYW 661



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 69/244 (28%), Positives = 125/244 (51%), Gaps = 12/244 (4%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA---VELFKVAPVK 130
           ++++  +++      AR +F  MPEKN V WSA+I+GY   G  + A   +E  + A V+
Sbjct: 56  SSLLHSYIRLGATGAARSVFDRMPEKNVVGWSALIAGYSARGDAEAAWGLLEQMRSAGVE 115

Query: 131 -SVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQ 189
            +V+ W  ++SG  + G      A D +  L  M   G  P+A+ +S  L     +  + 
Sbjct: 116 PNVITWNGLVSGLNRSGR-----ALDAVTALVRMHSEGFFPDATGVSCALSAVGDVKEVS 170

Query: 190 LGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYA 249
           +GKQVH  V K+    D   +T LI MY KCG  ++  ++F E    DV + NA+++G +
Sbjct: 171 VGKQVHGYVVKAGCRLDACVVTALIDMYGKCGRADEIVRVFHESSHMDVASCNALVAGLS 230

Query: 250 QHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKP 309
           ++ +  +AL LF +    G++ + +++ +++  C   G     +  F +M +   I  +P
Sbjct: 231 RNAQVSEALLLFREFICRGVELNVVSWTSIVACCVQNGRDLEAVDLFRTMQS---IGVEP 287

Query: 310 DHYT 313
           +  T
Sbjct: 288 NSVT 291



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 59/118 (50%), Gaps = 3/118 (2%)

Query: 170 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 229
           P+   L S L  C    +  L + +H     S L +D    + L+  Y + G    A  +
Sbjct: 18  PDPHLLPSALKSCP---AQPLARALHAAAVVSGLAEDPFVASSLLHSYIRLGATGAARSV 74

Query: 230 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG 287
           F  +  K+VV W+A+I+GY+  G  E A  L ++M+  G++P+ IT+  L+   N +G
Sbjct: 75  FDRMPEKNVVGWSALIAGYSARGDAEAAWGLLEQMRSAGVEPNVITWNGLVSGLNRSG 132


>gi|356519174|ref|XP_003528249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Glycine max]
          Length = 975

 Score =  400 bits (1028), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 227/619 (36%), Positives = 337/619 (54%), Gaps = 83/619 (13%)

Query: 4   KTTVNWNSVLAGFAKQ---RGKLKDAQELF--DKIPQPDVVSYNIMLSCI----LLN--- 51
           K  V+WN+++ G++K+   RG  +  QE+   +K+   +V   N++ +C     LL+   
Sbjct: 363 KNVVSWNTIIWGYSKEGDFRGVFELLQEMQREEKVRVNEVTVLNVLPACSGEHQLLSLKE 422

Query: 52  -----------SDDVVA-----------AFDFFQR----LPIKDTASWNTMISGFVQKKN 85
                       D++VA           + D  +R    +  K  +SWN +I    Q   
Sbjct: 423 IHGYAFRHGFLKDELVANAFVAAYAKCSSLDCAERVFCGMEGKTVSSWNALIGAHAQNGF 482

Query: 86  MAKARDLFLAM------PEKNSVS---------------------------------WSA 106
             K+ DLFL M      P++ ++                                    +
Sbjct: 483 PGKSLDLFLVMMDSGMDPDRFTIGSLLLACARLKFLRCGKEIHGFMLRNGLELDEFIGIS 542

Query: 107 MISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGL 166
           ++S YI+C  +     +F     KS+V W  MI+G+      +N    + L   R M+  
Sbjct: 543 LMSLYIQCSSMLLGKLIFDKMENKSLVCWNVMITGFS-----QNELPCEALDTFRQMLSG 597

Query: 167 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 226
           GI+P   +++ VL  CS +S+L+LGK+VH    K+ L +D      LI MY KCG +E +
Sbjct: 598 GIKPQEIAVTGVLGACSQVSALRLGKEVHSFALKAHLSEDAFVTCALIDMYAKCGCMEQS 657

Query: 227 CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHA 286
             +F  +  KD   WN +I+GY  HG G KA+ LF+ M+++G +PDS TF+ +L+ACNHA
Sbjct: 658 QNIFDRVNEKDEAVWNVIIAGYGIHGHGLKAIELFELMQNKGGRPDSFTFLGVLIACNHA 717

Query: 287 GLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGT 346
           GLV  G++Y   M N YG+  K +HY C+VD+LGRAG+L EA+ L+ +MP +P   I+ +
Sbjct: 718 GLVTEGLKYLGQMQNLYGVKPKLEHYACVVDMLGRAGQLTEALKLVNEMPDEPDSGIWSS 777

Query: 347 LLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENN 406
           LLS+CR +  L++ E  +  L  L P N A  YV L+N+YA + KWD+V ++R  MKEN 
Sbjct: 778 LLSSCRNYGDLEIGEEVSKKLLELEP-NKAENYVLLSNLYAGLGKWDEVRKVRQRMKENG 836

Query: 407 VVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVG 466
           + K  G SWIE+G +V+ F   D    E   I +   +LEK++   GY PD    LH + 
Sbjct: 837 LHKDAGCSWIEIGGMVYRFLVSDGSLSESKKIQQTWIKLEKKISKIGYKPDTSCVLHELE 896

Query: 467 EEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVR 526
           EE K ++L  HSEKLAI+FGL+    GT +RV KNLR+C DCH A K +S + KR+IIVR
Sbjct: 897 EEGKIKILKSHSEKLAISFGLLNTAKGTTLRVCKNLRICVDCHNAIKLVSKVVKRDIIVR 956

Query: 527 DTTRFHHFKDGTCSCGDYW 545
           D  RFHHFK+G C+CGD+W
Sbjct: 957 DNKRFHHFKNGLCTCGDFW 975



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 116/444 (26%), Positives = 192/444 (43%), Gaps = 67/444 (15%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYN-IMLSCILLNSDDVVAAFDFFQRLPIK 68
           N+++A + K  G ++ A ++F+ +   ++VS+N +M +C    +         F+RL I 
Sbjct: 234 NALIAMYGKC-GFVESAVKVFETMRNRNLVSWNSVMYACS--ENGGFGECCGVFKRLLIS 290

Query: 69  -------DTASWNTMIS-----GFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQ 116
                  D A+  T+I      G V+   +       L + E+ +V+ ++++  Y +CG 
Sbjct: 291 EEEGLVPDVATMVTVIPACAAVGEVRMGMVVHGLAFKLGITEEVTVN-NSLVDMYSKCGY 349

Query: 117 LDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLS 176
           L +A  LF +   K+VV+W  +I GY K G     +      L  M     +R N  ++ 
Sbjct: 350 LGEARALFDMNGGKNVVSWNTIIWGYSKEGDFRGVFE----LLQEMQREEKVRVNEVTVL 405

Query: 177 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK 236
           +VL  CS    L   K++H   F+    KD       ++ Y KC  L+ A ++F  ++ K
Sbjct: 406 NVLPACSGEHQLLSLKEIHGYAFRHGFLKDELVANAFVAAYAKCSSLDCAERVFCGMEGK 465

Query: 237 DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYF 296
            V +WNA+I  +AQ+G   K+L LF  M D GM PD  T  +LLLAC     +  G +  
Sbjct: 466 TVSSWNALIGAHAQNGFPGKSLDLFLVMMDSGMDPDRFTIGSLLLACARLKFLRCGKEIH 525

Query: 297 DSMVND-------YGIAAKPDHYTCMVDLLGR-------AGKLV---------------- 326
             M+ +        GI+    +  C   LLG+          LV                
Sbjct: 526 GFMLRNGLELDEFIGISLMSLYIQCSSMLLGKLIFDKMENKSLVCWNVMITGFSQNELPC 585

Query: 327 EAVDLIKKM---PFKPQPAIFGTLLSAC----------RVHK---RLDLAEFAAMNLFNL 370
           EA+D  ++M     KPQ      +L AC           VH    +  L+E A +    +
Sbjct: 586 EALDTFRQMLSGGIKPQEIAVTGVLGACSQVSALRLGKEVHSFALKAHLSEDAFVTCALI 645

Query: 371 NPANAAGCYVQLANIYAAMKKWDD 394
           +     GC  Q  NI+  + + D+
Sbjct: 646 DMYAKCGCMEQSQNIFDRVNEKDE 669



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 64/235 (27%), Positives = 119/235 (50%), Gaps = 11/235 (4%)

Query: 99  KNSVSWSA-MISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGL 157
           +N V  S  +I+ Y  CG    +  +F  A  K +  + A++SGY +     N+   D +
Sbjct: 125 RNDVVLSTRIIAMYSACGSPSDSRGVFDAAKEKDLFLYNALLSGYSR-----NALFRDAI 179

Query: 158 KL-LRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISM 216
            L L ++    + P+  +L  V   C+ ++ ++LG+ VH L  K+    D      LI+M
Sbjct: 180 SLFLELLSATDLAPDNFTLPCVAKACAGVADVELGEAVHALALKAGGFSDAFVGNALIAM 239

Query: 217 YCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKM---KDEGMKPDS 273
           Y KCG +E A K+F  ++ +++V+WN+++   +++G   +   +F ++   ++EG+ PD 
Sbjct: 240 YGKCGFVESAVKVFETMRNRNLVSWNSVMYACSENGGFGECCGVFKRLLISEEEGLVPDV 299

Query: 274 ITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEA 328
            T V ++ AC   G V +G+     +    GI  +      +VD+  + G L EA
Sbjct: 300 ATMVTVIPACAAVGEVRMGM-VVHGLAFKLGITEEVTVNNSLVDMYSKCGYLGEA 353



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 72/277 (25%), Positives = 136/277 (49%), Gaps = 19/277 (6%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G   D++ +FD   + D+  YN +LS    N+    A   F + L   D A  N  +   
Sbjct: 142 GSPSDSRGVFDAAKEKDLFLYNALLSGYSRNALFRDAISLFLELLSATDLAPDNFTLP-- 199

Query: 81  VQKKNMAKARDLFL----------AMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVK 130
              K  A   D+ L          A    ++   +A+I+ Y +CG ++ AV++F+    +
Sbjct: 200 CVAKACAGVADVELGEAVHALALKAGGFSDAFVGNALIAMYGKCGFVESAVKVFETMRNR 259

Query: 131 SVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIG--LGIRPNASSLSSVLLGCSHLSSL 188
           ++V+W +++    + G     + E      R++I    G+ P+ +++ +V+  C+ +  +
Sbjct: 260 NLVSWNSVMYACSENG----GFGECCGVFKRLLISEEEGLVPDVATMVTVIPACAAVGEV 315

Query: 189 QLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGY 248
           ++G  VH L FK  + ++ T    L+ MY KCG L +A  LF     K+VV+WN +I GY
Sbjct: 316 RMGMVVHGLAFKLGITEEVTVNNSLVDMYSKCGYLGEARALFDMNGGKNVVSWNTIIWGY 375

Query: 249 AQHGKGEKALRLFDKM-KDEGMKPDSITFVALLLACN 284
           ++ G       L  +M ++E ++ + +T + +L AC+
Sbjct: 376 SKEGDFRGVFELLQEMQREEKVRVNEVTVLNVLPACS 412



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 62/117 (52%), Gaps = 2/117 (1%)

Query: 178 VLLGCSHLSSLQLGKQVHQLVFKS-PLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK 236
           +L  C H  ++ +G++VH LV  S  L  D    T +I+MY  CG   D+  +F   + K
Sbjct: 98  LLRACGHHKNIHVGRKVHALVSASHKLRNDVVLSTRIIAMYSACGSPSDSRGVFDAAKEK 157

Query: 237 DVVTWNAMISGYAQHGKGEKALRLF-DKMKDEGMKPDSITFVALLLACNHAGLVDLG 292
           D+  +NA++SGY+++     A+ LF + +    + PD+ T   +  AC     V+LG
Sbjct: 158 DLFLYNALLSGYSRNALFRDAISLFLELLSATDLAPDNFTLPCVAKACAGVADVELG 214



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 67/287 (23%), Positives = 127/287 (44%), Gaps = 22/287 (7%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVA--- 57
           M  K+ V WN ++ GF++      +A + F ++    +    I ++ +L     V A   
Sbjct: 563 MENKSLVCWNVMITGFSQNELPC-EALDTFRQMLSGGIKPQEIAVTGVLGACSQVSALRL 621

Query: 58  -----AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYI 112
                +F     L  +D      +I  + +   M +++++F  + EK+   W+ +I+GY 
Sbjct: 622 GKEVHSFALKAHLS-EDAFVTCALIDMYAKCGCMEQSQNIFDRVNEKDEAVWNVIIAGYG 680

Query: 113 ECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGL-GIRPN 171
             G   KA+ELF++   K     +    G +           +GLK L  M  L G++P 
Sbjct: 681 IHGHGLKAIELFELMQNKGGRPDSFTFLGVL-IACNHAGLVTEGLKYLGQMQNLYGVKPK 739

Query: 172 ASSLSSV--LLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDL---EDA 226
               + V  +LG     + QL + + +LV + P   D+   + L+S     GDL   E+ 
Sbjct: 740 LEHYACVVDMLG----RAGQLTEAL-KLVNEMPDEPDSGIWSSLLSSCRNYGDLEIGEEV 794

Query: 227 CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDS 273
            K  LE++      +  + + YA  GK ++  ++  +MK+ G+  D+
Sbjct: 795 SKKLLELEPNKAENYVLLSNLYAGLGKWDEVRKVRQRMKENGLHKDA 841


>gi|222617563|gb|EEE53695.1| hypothetical protein OsJ_00010 [Oryza sativa Japonica Group]
          Length = 1008

 Score =  400 bits (1028), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 211/544 (38%), Positives = 324/544 (59%), Gaps = 15/544 (2%)

Query: 10   NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLN--SDDVVAAFDFFQRLPI 67
            N+ L  F  +   L D + LFD++P+ D VSYN++++    N  +  V+  F   Q+L  
Sbjct: 472  NNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGF 531

Query: 68   -KDTASWNTMIS--GFVQKKNMAK---ARDLFLAMPEKNSVSWSAMISGYIECGQLDKAV 121
             +    + TM+S  G +   ++ K   A+ + L +  ++ +  +A+I  Y +CG LD A 
Sbjct: 532  DRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLG-NALIDMYSKCGMLDAAK 590

Query: 122  ELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLG 181
              F     KS ++WTA+I+GY     V+N   E+ L+L   M   G+RP+ ++ SS++  
Sbjct: 591  SNFSNRSEKSAISWTALITGY-----VQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKA 645

Query: 182  CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTW 241
             S L+ + LG+Q+H  + +S       + + L+ MY KCG L++A + F E+  ++ ++W
Sbjct: 646  SSSLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSISW 705

Query: 242  NAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN 301
            NA+IS YA +G+ + A+++F+ M   G  PDS+TF+++L AC+H GL D  ++YF  M +
Sbjct: 706  NAVISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAACSHNGLADECMKYFHLMKH 765

Query: 302  DYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAE 361
             Y I+   +HY C++D LGR G   +   ++ +MPFK  P I+ ++L +CR+H   +LA 
Sbjct: 766  QYSISPWKEHYACVIDTLGRVGCFSQVQKMLVEMPFKADPIIWTSILHSCRIHGNQELAR 825

Query: 362  FAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTV 421
             AA  LF + P +A   YV L+NIYA   +W+D A ++  M++  V K  GYSW+E+   
Sbjct: 826  VAADKLFGMEPTDATP-YVILSNIYARAGQWEDAACVKKIMRDRGVRKESGYSWVEIKQK 884

Query: 422  VHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKL 481
            ++ F S D   P +  I ++L  L K M   GY PD+  ALH V  E+K + L +HSE+L
Sbjct: 885  IYSFASNDLTSPMIDEIKDELDRLYKEMDKQGYKPDITCALHMVDHELKLESLKYHSERL 944

Query: 482  AIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSC 541
            AIAF L+  P GTPIR+ KNL  C DCH   K IS I  R+IIVRD+ RFHHFKDG CSC
Sbjct: 945  AIAFALMNTPAGTPIRIMKNLTACLDCHAVIKMISKIVNRDIIVRDSRRFHHFKDGVCSC 1004

Query: 542  GDYW 545
            GDYW
Sbjct: 1005 GDYW 1008



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 63/205 (30%), Positives = 100/205 (48%), Gaps = 22/205 (10%)

Query: 70  TASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPV 129
           T   N  +   +   ++ +AR +F  MP KN  S + ++S Y   G L  A  LF  +P 
Sbjct: 257 TYRLNLGLRSLLSSGHLHRARAMFDQMPHKNIFSLNLILSAYSSSGDLPAAQHLFLSSPH 316

Query: 130 KSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVL--LGCS---- 183
           ++   WT M+  +   G        D L L R M+G G+ P+  ++++VL   GC+    
Sbjct: 317 RNATTWTIMMRAHAAAGRTS-----DALSLFRAMLGEGVIPDRVTVTTVLNLPGCTVPSL 371

Query: 184 HLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNA 243
           H  +++ G   H  V  +           L+  YCK G L  A ++FLE+  KD VT+NA
Sbjct: 372 HPFAIKFGLDTHVFVCNT-----------LLDAYCKHGLLAAARRVFLEMHDKDAVTYNA 420

Query: 244 MISGYAQHGKGEKALRLFDKMKDEG 268
           M+ G ++ G   +AL+LF  M+  G
Sbjct: 421 MMMGCSKEGLHTQALQLFAAMRRAG 445



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 82/351 (23%), Positives = 140/351 (39%), Gaps = 68/351 (19%)

Query: 156 GLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLIS 215
           G  +L   + LG+R   S LSS   G  H +     +  H+ +F         +L  ++S
Sbjct: 252 GFDVLTYRLNLGLR---SLLSS---GHLHRARAMFDQMPHKNIF---------SLNLILS 296

Query: 216 MYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSIT 275
            Y   GDL  A  LFL    ++  TW  M+  +A  G+   AL LF  M  EG+ PD +T
Sbjct: 297 AYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAMLGEGVIPDRVT 356

Query: 276 FVAL--LLACNHAGLVDLGIQY-FDSMVNDYGIAAKPDHYTC--MVDLLGRAGKLVEAVD 330
              +  L  C    L    I++  D+ V           + C  ++D   + G L  A  
Sbjct: 357 VTTVLNLPGCTVPSLHPFAIKFGLDTHV-----------FVCNTLLDAYCKHGLLAAARR 405

Query: 331 LIKKMPFKPQPAIFGTLLSACR---VHKRLDLAEFAAM----------NLFNLNPANAAG 377
           +  +M  K     +  ++  C    +H +  L  FAAM          +L   + + +  
Sbjct: 406 VFLEMHDK-DAVTYNAMMMGCSKEGLHTQA-LQLFAAMRRAGYSRHPLHLLQYSHSRSRS 463

Query: 378 CYV-------QLANIYAAMKKWDDVARIRLSMKENNVVK----MPGYSWIE-VGTVVHEF 425
             V        L + Y+     DD+ R+   M E + V     +  Y+W +   TV+  F
Sbjct: 464 TSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLF 523

Query: 426 RSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLF 476
           R   +     +    ++      + +AG +PD+      +G+++  QL+L 
Sbjct: 524 REMQK-----LGFDRQVLPYATMLSVAGSLPDVH-----IGKQIHAQLVLL 564


>gi|224117814|ref|XP_002331638.1| predicted protein [Populus trichocarpa]
 gi|222874034|gb|EEF11165.1| predicted protein [Populus trichocarpa]
          Length = 480

 Score =  400 bits (1028), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 202/455 (44%), Positives = 285/455 (62%), Gaps = 12/455 (2%)

Query: 92  LFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENS 151
           LF  MP K++V+   MI+ Y E      A ++F++ P K +VAW ++I+G+       N 
Sbjct: 37  LFDEMPHKDTVTLDTMITAYFE-----SAYKVFELMPEKDIVAWNSVINGF-----ALNG 86

Query: 152 WAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALT 211
              + L L + M   G+ P+  ++ S+L  C+ L++L LG++ H  + K  L K+  A  
Sbjct: 87  KPNEALTLYKRMGSEGVEPDGFTMVSLLSACAELATLVLGRRAHVYMVKVGLNKNLHANN 146

Query: 212 PLISMYCKCGDLEDACKLFLEIQ-RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMK 270
            L+ +Y KCG + +A K+F E+   ++VV+W ++I G A +G G++AL  F  M+ EG+ 
Sbjct: 147 ALLDLYAKCGTISEARKIFDEMGIERNVVSWTSLIVGLAVNGFGKEALEHFKDMEREGLV 206

Query: 271 PDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVD 330
           P  ITFV +L AC+H G+V+ G +YF  M   Y I  + +HY CMVDLLGRAG L EA D
Sbjct: 207 PSEITFVGVLYACSHCGIVNEGFEYFKRMKEQYDIVPRIEHYGCMVDLLGRAGLLKEAYD 266

Query: 331 LIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMK 390
            I+ MP +P   I+ TLL AC +H  L L  FA   L  L P ++ G YV L+N+YA+ +
Sbjct: 267 YIQDMPLQPNAVIWRTLLGACTIHGHLGLGAFARARLLQLEPKDS-GDYVLLSNLYASEQ 325

Query: 391 KWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMK 450
           +W DV  +R +M    V K PGYS +E+G  VHEF  GDR HP+  +I++ L E+  ++K
Sbjct: 326 RWSDVHEVRRTMLSEGVRKTPGYSLVELGNHVHEFVMGDRTHPQSEAIYKMLVEMAMKLK 385

Query: 451 LAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHR 510
           LAGYVP     L  + EE KE  L +HSEK+AIAF LI    GTPIR+ KNLRVC DCH 
Sbjct: 386 LAGYVPHTANVLADIEEEEKESALFYHSEKIAIAFMLINTLPGTPIRIIKNLRVCADCHF 445

Query: 511 ATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           A K IS + +R+I+VRD +RFHHF+DG+CSC DYW
Sbjct: 446 AIKLISKVFERDIVVRDCSRFHHFRDGSCSCRDYW 480



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 49/151 (32%), Positives = 72/151 (47%), Gaps = 29/151 (19%)

Query: 213 LISMYCKC--GDLEDACKLFLEIQRKDVVT--------------------------WNAM 244
           ++S Y KC  GDL  ACKLF E+  KD VT                          WN++
Sbjct: 19  ILSRYSKCVVGDLNLACKLFDEMPHKDTVTLDTMITAYFESAYKVFELMPEKDIVAWNSV 78

Query: 245 ISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYG 304
           I+G+A +GK  +AL L+ +M  EG++PD  T V+LL AC     + LG +    MV   G
Sbjct: 79  INGFALNGKPNEALTLYKRMGSEGVEPDGFTMVSLLSACAELATLVLGRRAHVYMVK-VG 137

Query: 305 IAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335
           +         ++DL  + G + EA  +  +M
Sbjct: 138 LNKNLHANNALLDLYAKCGTISEARKIFDEM 168


>gi|297798134|ref|XP_002866951.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312787|gb|EFH43210.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 630

 Score =  400 bits (1027), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 201/472 (42%), Positives = 296/472 (62%), Gaps = 8/472 (1%)

Query: 76  MISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAW 135
           ++  + +  ++  A+ +F  MPE++ VS +AMI+ Y + G ++ A  LF     + +V+W
Sbjct: 165 LVDIYAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDRMCERDIVSW 224

Query: 136 TAMISGYMKFGYVENSWAEDGLKLLRMMIGLG-IRPNASSLSSVLLGCSHLSSLQLGKQV 194
             MI GY + G+       D L L + ++  G  +P+  ++ + L  CS + +L+ G+ +
Sbjct: 225 NVMIDGYSQHGF-----PSDALMLFQKLLADGKPKPDEITVVAALSACSQIGALETGRWI 279

Query: 195 HQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKG 254
           H  V  S +  +    T LI MY KCG LE+A  +F +  RKD+V WNAMI+GYA HG  
Sbjct: 280 HVFVNSSRIRLNVKVCTALIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMITGYAMHGYS 339

Query: 255 EKALRLFDKMKD-EGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYT 313
           + ALRLFD+M+   G++P  ITF+  L AC HAGLV+ GIQ F+SM  +YGI  K +HY 
Sbjct: 340 QDALRLFDEMQGITGLQPTDITFIGTLQACAHAGLVNEGIQIFESMGQEYGIKPKIEHYG 399

Query: 314 CMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPA 373
           C+V LLGRAG+L  A ++IK M  +    ++ ++L +C++H    L +  A  L   N +
Sbjct: 400 CLVSLLGRAGQLKRAYEIIKNMNMEADSVLWSSVLGSCKLHGEFMLGKEIAEYLIGQNIS 459

Query: 374 NAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHP 433
           N+ G YV L+NIYA +  ++ VA++R  MKE  +VK PG S IE+   VHEFR+GDR H 
Sbjct: 460 NS-GIYVLLSNIYALVGDYEGVAKVRNLMKEKGIVKEPGISTIEIDNKVHEFRAGDREHL 518

Query: 434 ELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLG 493
           +   I+  L+++ +R+K  GYVP+    LH + E  KE+ L  HSE+LAIA+GLI    G
Sbjct: 519 KSKEIYTMLRKMSERIKSHGYVPNTNTVLHDLEETEKERSLQVHSERLAIAYGLISTKPG 578

Query: 494 TPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           +P+++FKNLRVC DCH  TK IS I  R+I++RD  RFHHF DG+CSC D+W
Sbjct: 579 SPLKIFKNLRVCSDCHTVTKLISKITGRKIVMRDRNRFHHFSDGSCSCDDFW 630



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 80/266 (30%), Positives = 115/266 (43%), Gaps = 52/266 (19%)

Query: 110 GYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLK-----LLRMMI 164
            Y   G++  ++ LF       +  +TA I          N+ + +GLK     L   ++
Sbjct: 71  AYASHGKIRHSLALFHQTIDPDLFLFTAAI----------NTASINGLKDQAFLLYVQLL 120

Query: 165 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 224
              I PN  + SS+L  CS  S    GK +H  V K  L  D    T L+ +Y K GD+ 
Sbjct: 121 SSQINPNEFTFSSILKSCSTKS----GKLIHTHVLKFGLGLDPYVATGLVDIYAKGGDVV 176

Query: 225 DACKLF-----------------------LEIQR--------KDVVTWNAMISGYAQHGK 253
            A K+F                       +E  R        +D+V+WN MI GY+QHG 
Sbjct: 177 SAQKVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDRMCERDIVSWNVMIDGYSQHGF 236

Query: 254 GEKALRLFDKMKDEGM-KPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY 312
              AL LF K+  +G  KPD IT VA L AC+  G ++ G ++    VN   I       
Sbjct: 237 PSDALMLFQKLLADGKPKPDEITVVAALSACSQIGALETG-RWIHVFVNSSRIRLNVKVC 295

Query: 313 TCMVDLLGRAGKLVEAVDLIKKMPFK 338
           T ++D+  + G L EAV +    P K
Sbjct: 296 TALIDMYSKCGSLEEAVLVFNDTPRK 321


>gi|147801369|emb|CAN74731.1| hypothetical protein VITISV_037837 [Vitis vinifera]
          Length = 719

 Score =  400 bits (1027), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 227/549 (41%), Positives = 309/549 (56%), Gaps = 51/549 (9%)

Query: 42  NIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK-- 99
           N +L+    N D   A   F+    I+D  SWN+MI  + Q +  +KA  LF  M  +  
Sbjct: 177 NALLTYYGKNGDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGL 236

Query: 100 -------------------------------------NSVSWSAMISGYIECGQ-LDKAV 121
                                                NS   S +I  Y +CG  +    
Sbjct: 237 NVDMFTLASVLTAFTCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCR 296

Query: 122 ELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLG 181
           ++F+      +V W  M+SGY +       + ED L+  R M G+G RPN  S   V+  
Sbjct: 297 KVFEEITEPDLVLWNTMVSGYSQ----NEEFLEDALECFRQMQGIGYRPNDCSFVCVISA 352

Query: 182 CSHLSSLQLGKQVHQLVFKSPLCKDTTAL-TPLISMYCKCGDLEDACKLFLEIQRKDVVT 240
           CS+LSS   GKQ+H L  KS +  +  ++   LI+MY KCG+L+DA +LF  +   + V+
Sbjct: 353 CSNLSSPSQGKQIHSLALKSDIPSNRISVDNALIAMYSKCGNLQDARRLFDRMAEHNTVS 412

Query: 241 WNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV 300
            N+MI+GYAQHG   ++L LF  M +  + P SITF+++L AC H G V+ G  YF+ M 
Sbjct: 413 LNSMIAGYAQHGIEMESLHLFQWMLERQIAPTSITFISVLSACAHTGRVEEGWNYFNMMK 472

Query: 301 NDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLA 360
             + I  + +HY+CM+DLLGRAGKL EA +LI +MPF P    + +LL ACR H  ++LA
Sbjct: 473 EKFNIEPEAEHYSCMIDLLGRAGKLSEAENLIARMPFNPGSIGWASLLGACRTHGNIELA 532

Query: 361 EFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGT 420
             AA  +  L P+NAA  YV L+N+YA+  +W++VA +R  M++  V K PG SWIEV  
Sbjct: 533 VKAANQVLQLEPSNAAP-YVVLSNMYASAGRWEEVATVRKFMRDRGVKKKPGCSWIEVKK 591

Query: 421 VVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFAL----HAVGEEVKEQLLLF 476
            +H F + D  HP +  I+E L+E+  +MK AGYVPD+ +AL       G E KE  L  
Sbjct: 592 RIHVFVAEDSSHPMIKEIYEFLEEMSGKMKRAGYVPDVRWALVKDDGTRGGE-KEIRLGH 650

Query: 477 HSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKD 536
           HSEKLA+AFGLI    G P+ V KNLR+CGDCH A K+ISAI  REI VRD  RFH FK+
Sbjct: 651 HSEKLAVAFGLISTKDGEPVLVVKNLRICGDCHNAIKFISAIAGREITVRDAHRFHCFKE 710

Query: 537 GTCSCGDYW 545
           G CSCGDYW
Sbjct: 711 GQCSCGDYW 719



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 71/278 (25%), Positives = 129/278 (46%), Gaps = 9/278 (3%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVV 133
           N  I  + +   +A AR  F  + + N  S++A+I+ Y +  +   A +LF   P   +V
Sbjct: 47  NHFILLYSKCGRLAWARKAFQDISDPNVFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLV 106

Query: 134 AWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ 193
           ++  +IS Y   G    +     L L   M  +G+  +  +LS+V+  C     + L  Q
Sbjct: 107 SYNTLISAYADCGETAPA-----LGLFSGMREMGLDMDXFTLSAVITAC--CDDVGLIGQ 159

Query: 194 VHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR-KDVVTWNAMISGYAQHG 252
           +H +   S      +    L++ Y K GDL+DA ++F  +   +D V+WN+MI  Y QH 
Sbjct: 160 LHSVAVSSGFDSYVSVNNALLTYYGKNGDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQ 219

Query: 253 KGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY 312
           +G KAL LF +M   G+  D  T  ++L A      +  G+Q+   ++   G        
Sbjct: 220 EGSKALGLFQEMVRRGLNVDMFTLASVLTAFTCLEDLSGGLQFHGQLIKT-GFHQNSHVG 278

Query: 313 TCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSA 350
           + ++DL  + G  +     + +   +P   ++ T++S 
Sbjct: 279 SGLIDLYSKCGGGMSDCRKVFEEITEPDLVLWNTMVSG 316



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 58/122 (47%), Gaps = 4/122 (3%)

Query: 178 VLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKD 237
           +L  C     L  GK +H L  KS +   T      I +Y KCG L  A K F +I   +
Sbjct: 14  LLKTCIAERDLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQDISDPN 73

Query: 238 VVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFD 297
           V ++NA+I+ YA+  +   A +LFD++ +    PD +++  L+ A    G     +  F 
Sbjct: 74  VFSFNAIIAAYAKESRPLIAHQLFDQIPE----PDLVSYNTLISAYADCGETAPALGLFS 129

Query: 298 SM 299
            M
Sbjct: 130 GM 131


>gi|356519952|ref|XP_003528632.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 693

 Score =  400 bits (1027), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 218/497 (43%), Positives = 301/497 (60%), Gaps = 13/497 (2%)

Query: 54  DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMIS 109
           D+  A   F  +  K+  SWN MISG+V+  N  +   LF  M     + + V+ S +++
Sbjct: 205 DIDKARLLFDGMIDKNVVSWNLMISGYVKMGNPNECIHLFNEMQLSGLKPDLVTVSNVLN 264

Query: 110 GYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIR 169
            Y  CG++D A  LF   P K  + WT MI GY + G  E++W   G  L R      ++
Sbjct: 265 AYFRCGRVDDARNLFIKLPKKDEICWTTMIVGYAQNGREEDAWMLFGDMLRR-----NVK 319

Query: 170 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 229
           P++ ++SS++  C+ L+SL  G+ VH  V    +       + L+ MYCKCG   DA  +
Sbjct: 320 PDSYTISSMVSSCAKLASLYHGQVVHGKVVVMGIDNSMLVSSALVDMYCKCGVTLDARVI 379

Query: 230 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLV 289
           F  +  ++V+TWNAMI GYAQ+G+  +AL L+++M+ E  KPD+ITFV +L AC +A +V
Sbjct: 380 FETMPIRNVITWNAMILGYAQNGQVLEALTLYERMQQENFKPDNITFVGVLSACINADMV 439

Query: 290 DLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLS 349
             G +YFDS ++++GIA   DHY CM+ LLGR+G + +AVDLI+ MP +P   I+ TLLS
Sbjct: 440 KEGQKYFDS-ISEHGIAPTLDHYACMITLLGRSGSVDKAVDLIQGMPHEPNYRIWSTLLS 498

Query: 350 ACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVK 409
            C     L  AE AA +LF L+P N AG Y+ L+N+YAA  +W DVA +R  MKE N  K
Sbjct: 499 VC-AKGDLKNAELAASHLFELDPRN-AGPYIMLSNLYAACGRWKDVAVVRSLMKEKNAKK 556

Query: 410 MPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEV 469
              YSW+EVG  VH F S D  HPE+  I+ +L  L   ++  GY PD    LH VGEE 
Sbjct: 557 FAAYSWVEVGNKVHRFVSEDHYHPEVGKIYGELNRLISILQQIGYNPDTNIVLHNVGEEE 616

Query: 470 KEQLLLFHSEKLAIAFGLIKVPLGT-PIRVFKNLRVCGDCHRATKYISAIEKREIIVRDT 528
           K + + +HSEKLA+AF LI+ P G  PIR+ KN+RVC DCH   K+ S    R II+RD+
Sbjct: 617 KFRSISYHSEKLALAFALIRKPNGVAPIRIIKNIRVCDDCHVFMKFASITISRPIIMRDS 676

Query: 529 TRFHHFKDGTCSCGDYW 545
            RFHHF  G CSC D W
Sbjct: 677 NRFHHFFGGKCSCNDNW 693



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 118/424 (27%), Positives = 180/424 (42%), Gaps = 134/424 (31%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCI----LLNSDDVVAAFDFFQRL 65
           N +L  +AK  GKL DAQ +FD + + DV S+N +LS      ++ +  VV     F ++
Sbjct: 62  NQLLHLYAK-FGKLSDAQNVFDNMTKRDVYSWNTLLSAYAKMGMVENLHVV-----FDQM 115

Query: 66  PIKDTASWNTMISGFVQKKNMAKARDLFLAMPE--------------------------- 98
           P +D+ S+NT+I+ F    +  KA  + + M E                           
Sbjct: 116 PYRDSVSYNTLIACFASNGHSGKALKVLVRMQEDGFQPTQYSHVNALQACSQLLDLRHGK 175

Query: 99  ------------KNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFG 146
                       +N+   +AM   Y +CG +DKA  LF     K+VV+W  MISGY+K G
Sbjct: 176 QIHGRIVVADLGENTFVRNAMTDMYAKCGDIDKARLLFDGMIDKNVVSWNLMISGYVKMG 235

Query: 147 YVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHL-SSLQLGKQVHQLVFKSPLCK 205
                                  PN          C HL + +QL          S L  
Sbjct: 236 ----------------------NPNE---------CIHLFNEMQL----------SGLKP 254

Query: 206 DTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMK 265
           D   ++ +++ Y +CG ++DA  LF+++ +KD + W  MI GYAQ+G+ E A  LF  M 
Sbjct: 255 DLVTVSNVLNAYFRCGRVDDARNLFIKLPKKDEICWTTMIVGYAQNGREEDAWMLFGDML 314

Query: 266 DEGMKPDSITFVALLLACN-----------HAGLVDLGIQYFDSMVNDYGIAAKPDHY-T 313
              +KPDS T  +++ +C            H  +V +GI   +SM+     +A  D Y  
Sbjct: 315 RRNVKPDSYTISSMVSSCAKLASLYHGQVVHGKVVVMGID--NSMLVS---SALVDMYCK 369

Query: 314 CMVDLLGRA-----------------------GKLVEAVDLIKKMP---FKPQPAIFGTL 347
           C V L  R                        G+++EA+ L ++M    FKP    F  +
Sbjct: 370 CGVTLDARVIFETMPIRNVITWNAMILGYAQNGQVLEALTLYERMQQENFKPDNITFVGV 429

Query: 348 LSAC 351
           LSAC
Sbjct: 430 LSAC 433



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 79/287 (27%), Positives = 141/287 (49%), Gaps = 13/287 (4%)

Query: 68  KDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVA 127
           KD+   N ++  + +   ++ A+++F  M +++  SW+ ++S Y + G ++    +F   
Sbjct: 56  KDSFIHNQLLHLYAKFGKLSDAQNVFDNMTKRDVYSWNTLLSAYAKMGMVENLHVVFDQM 115

Query: 128 PVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSS 187
           P +  V++  +I+ +   G+     +   LK+L  M   G +P   S  + L  CS L  
Sbjct: 116 PYRDSVSYNTLIACFASNGH-----SGKALKVLVRMQEDGFQPTQYSHVNALQACSQLLD 170

Query: 188 LQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISG 247
           L+ GKQ+H  +  + L ++T     +  MY KCGD++ A  LF  +  K+VV+WN MISG
Sbjct: 171 LRHGKQIHGRIVVADLGENTFVRNAMTDMYAKCGDIDKARLLFDGMIDKNVVSWNLMISG 230

Query: 248 YAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAA 307
           Y + G   + + LF++M+  G+KPD +T   +L A    G VD     F  +     I  
Sbjct: 231 YVKMGNPNECIHLFNEMQLSGLKPDLVTVSNVLNAYFRCGRVDDARNLFIKLPKKDEIC- 289

Query: 308 KPDHYTCMVDLLGRAGKLVEAVDLIKKM---PFKPQPAIFGTLLSAC 351
               +T M+    + G+  +A  L   M     KP      +++S+C
Sbjct: 290 ----WTTMIVGYAQNGREEDAWMLFGDMLRRNVKPDSYTISSMVSSC 332



 Score = 44.3 bits (103), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 73/142 (51%), Gaps = 18/142 (12%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQ----PDVVSY-NIMLSCILLNSDDV 55
           M ++  + WN+++ G+A Q G++ +A  L++++ Q    PD +++  ++ +CI  N+D V
Sbjct: 383 MPIRNVITWNAMILGYA-QNGQVLEALTLYERMQQENFKPDNITFVGVLSACI--NADMV 439

Query: 56  VAAFDFFQRLPIKDTA----SWNTMISGFVQKKNMAKARDLFLAMP-EKNSVSWSAMIS- 109
                +F  +     A     +  MI+   +  ++ KA DL   MP E N   WS ++S 
Sbjct: 440 KEGQKYFDSISEHGIAPTLDHYACMITLLGRSGSVDKAVDLIQGMPHEPNYRIWSTLLSV 499

Query: 110 ---GYIECGQLDKAVELFKVAP 128
              G ++  +L  A  LF++ P
Sbjct: 500 CAKGDLKNAEL-AASHLFELDP 520


>gi|296084465|emb|CBI25024.3| unnamed protein product [Vitis vinifera]
          Length = 621

 Score =  400 bits (1027), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 214/554 (38%), Positives = 327/554 (59%), Gaps = 54/554 (9%)

Query: 35  QPDVVSYNIMLS----CILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKAR 90
           + D ++ N++++    C L+ S     A   F  +P++   SWNTM+    Q  +  KA 
Sbjct: 79  RADTITSNMLMNMYSKCGLVES-----ARKLFDEMPVRSLVSWNTMVGSHTQNGDCEKAL 133

Query: 91  DLFLAMPEK---------------------------------------NSVSWSAMISGY 111
            LF+ M ++                                       N    +A++  Y
Sbjct: 134 VLFMQMQKEGTSCSEFTVSSVVCACAAKCCVFECKQLHGFALKTALDSNVFVGTALLDVY 193

Query: 112 IECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPN 171
            +CG +  A  +F+  P +S V W++M++GY     V+N   E+ L L      +G+  N
Sbjct: 194 AKCGLVKDANLVFECMPERSDVTWSSMVAGY-----VQNELYEEALVLFHRAQAMGLEHN 248

Query: 172 ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFL 231
             ++SS L  C+  ++L  GKQV  +  K+ +  +   ++ LI MY KCG +E+A  +F 
Sbjct: 249 QFTISSALSACAARAALIEGKQVQAVSCKTGIGSNIFVISSLIDMYAKCGIIEEAYTVFS 308

Query: 232 EIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDL 291
            ++ K+VV WNA++SG+++H +  +A+  F+KM+  G+ P+ IT++++L AC+H GLV+ 
Sbjct: 309 SVEEKNVVLWNAILSGFSRHVRSLEAMIYFEKMQQMGICPNDITYISVLSACSHLGLVEK 368

Query: 292 GIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSAC 351
           G +YFD M+  + ++    HY+CMVD+LGRAG L EA D I +MPF    +++G+LL++C
Sbjct: 369 GRKYFDLMIRVHNVSPNVLHYSCMVDILGRAGLLHEAKDFIDRMPFDATASMWGSLLASC 428

Query: 352 RVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMP 411
           R+++ L+LAE AA +LF + P N AG +V L+NIYAA  +W++VAR R  +KE+   K  
Sbjct: 429 RIYRNLELAEVAAKHLFEIEPHN-AGNHVLLSNIYAANDRWEEVARARNLLKESKAKKER 487

Query: 412 GYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKE 471
           G SWIE+   VH F  G+R HP +V I+ KL++L   MK  GY    E  LH V E  K+
Sbjct: 488 GKSWIEIKHKVHSFMVGERNHPRIVEIYLKLEDLVGEMKKIGYKAKTEHDLHDVEESRKQ 547

Query: 472 QLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRF 531
           +LL  HSEKLA+ FG++ +P G PIR+ KNLR+CGDCH   K  S+I +REIIVRDT RF
Sbjct: 548 ELLRHHSEKLALTFGIMVLPHGAPIRIMKNLRICGDCHSFMKLASSITEREIIVRDTNRF 607

Query: 532 HHFKDGTCSCGDYW 545
           HHFK+G CSCG++W
Sbjct: 608 HHFKNGYCSCGEFW 621



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 47/147 (31%), Positives = 73/147 (49%), Gaps = 13/147 (8%)

Query: 150 NSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQL-------------GKQVHQ 196
           NS++     LL +   +  RP++  L  V +  +H+S LQ              G   H 
Sbjct: 12  NSFSLQVRHLLAISNAMAERPSSKELVWVGIRATHVSELQHLLQSSARNRAAIEGMACHA 71

Query: 197 LVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEK 256
            + +  L  DT     L++MY KCG +E A KLF E+  + +V+WN M+  + Q+G  EK
Sbjct: 72  QIIRVGLRADTITSNMLMNMYSKCGLVESARKLFDEMPVRSLVSWNTMVGSHTQNGDCEK 131

Query: 257 ALRLFDKMKDEGMKPDSITFVALLLAC 283
           AL LF +M+ EG      T  +++ AC
Sbjct: 132 ALVLFMQMQKEGTSCSEFTVSSVVCAC 158


>gi|359490555|ref|XP_003634110.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Vitis vinifera]
          Length = 678

 Score =  400 bits (1027), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 214/498 (42%), Positives = 300/498 (60%), Gaps = 14/498 (2%)

Query: 55  VVAAFDFFQRLPIKDTASWNTMISG------FVQKKNMAKARDLFLAMPEKNSVSWSAMI 108
           +V A     ++P +D  SWN++++G      F     + K  +L    P+  +++ S + 
Sbjct: 188 LVEACRVLDQMPCRDVVSWNSLVAGCARNGQFDDALEVCKEMELLGLKPDAGTMA-SLLP 246

Query: 109 SGYIEC-GQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLG 167
           +    C   +    E+F     KS+V+W  MI+ YM      NS   + + +   M    
Sbjct: 247 AVTNTCLDNVSFVKEMFMKLANKSLVSWNVMIAVYMN-----NSMPAEAVDIFLQMEDHA 301

Query: 168 IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC 227
           + P+A S++SVL  C  LS+L LG+++H+ V +  L  +      LI MY KCG LE A 
Sbjct: 302 VDPDAISIASVLPACGDLSALLLGRRIHEYVVRKRLQPNLLLENALIDMYAKCGCLEYAR 361

Query: 228 KLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG 287
           ++F +++ +DVV+W +MIS Y  +GKG  A+ LF +M+D G+ PDSI FV++L AC+HAG
Sbjct: 362 EVFDQMKFRDVVSWTSMISAYGMNGKGRDAVSLFSRMQDLGLNPDSIAFVSVLSACSHAG 421

Query: 288 LVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTL 347
           L+D G  YF  M  +  I  + +H+ CMVDLLGRAG++ EA   IK+MP +P   ++G L
Sbjct: 422 LLDEGRYYFKLMTEECKIVPRIEHFVCMVDLLGRAGQVDEAYGFIKQMPMEPNERVWGAL 481

Query: 348 LSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNV 407
           LSACRV+  + +   AA  LF L P   +G YV L+NIYA   +W+DV  +R  MK   +
Sbjct: 482 LSACRVYSNMIIGLLAADQLFQLCPEQ-SGYYVLLSNIYAKAGRWEDVTTVRSIMKTKGI 540

Query: 408 VKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGE 467
            KMPG S  E+   VH F +GD+ HP+   I+E+L     +MK AGYVP+ + ALH V E
Sbjct: 541 KKMPGVSNFELDNRVHTFLAGDQSHPQSKQIYEELDVSVGKMKEAGYVPETDSALHDVEE 600

Query: 468 EVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRD 527
           E KE  L  HSEKLAIAF ++    G+PIR+ KNLRVCGDCH A K IS I  REI +RD
Sbjct: 601 EDKECHLAVHSEKLAIAFAILNTAPGSPIRITKNLRVCGDCHIAAKLISKIVGREITIRD 660

Query: 528 TTRFHHFKDGTCSCGDYW 545
           T RFHHF +G CSCGDYW
Sbjct: 661 TNRFHHFYNGVCSCGDYW 678



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 72/250 (28%), Positives = 121/250 (48%), Gaps = 15/250 (6%)

Query: 107 MISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGL 166
           ++  Y  CG+      +F   P K+VV +  MI  Y     V N    D L + + M G 
Sbjct: 77  LMRAYAVCGEPWSTRHIFDEIPKKNVVFFNVMIRSY-----VNNHLYSDALLVFKNMAGH 131

Query: 167 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 226
           GI P+  +   VL   S    L +G Q+H  V +  L  +      LISMY KCG L +A
Sbjct: 132 GIDPDHYTYPCVLKASSGSEDLWVGMQIHAAVVRVGLDLNVFVGNGLISMYGKCGCLVEA 191

Query: 227 CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHA 286
           C++  ++  +DVV+WN++++G A++G+ + AL +  +M+  G+KPD+ T  +LL A  + 
Sbjct: 192 CRVLDQMPCRDVVSWNSLVAGCARNGQFDDALEVCKEMELLGLKPDAGTMASLLPAVTNT 251

Query: 287 GLVDLGI--QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM---PFKPQP 341
            L ++    + F  + N   ++     +  M+ +        EAVD+  +M      P  
Sbjct: 252 CLDNVSFVKEMFMKLANKSLVS-----WNVMIAVYMNNSMPAEAVDIFLQMEDHAVDPDA 306

Query: 342 AIFGTLLSAC 351
               ++L AC
Sbjct: 307 ISIASVLPAC 316



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 90/388 (23%), Positives = 156/388 (40%), Gaps = 93/388 (23%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIP----QPDVVSYNIMLSCILLNS-DDV 55
           M  +  V+WNS++AG A+  G+  DA E+  ++     +PD  +   +L  +     D+V
Sbjct: 198 MPCRDVVSWNSLVAGCARN-GQFDDALEVCKEMELLGLKPDAGTMASLLPAVTNTCLDNV 256

Query: 56  VAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM------PEKNSVS------ 103
               + F +L  K   SWN MI+ ++     A+A D+FL M      P+  S++      
Sbjct: 257 SFVKEMFMKLANKSLVSWNVMIAVYMNNSMPAEAVDIFLQMEDHAVDPDAISIASVLPAC 316

Query: 104 ---------------------------WSAMISGYIECGQLDKAVELFKVAPVKSVVAWT 136
                                       +A+I  Y +CG L+ A E+F     + VV+WT
Sbjct: 317 GDLSALLLGRRIHEYVVRKRLQPNLLLENALIDMYAKCGCLEYAREVFDQMKFRDVVSWT 376

Query: 137 AMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQ 196
           +MIS Y       N    D + L   M  LG+ P++ +  SVL  CSH   L  G+   +
Sbjct: 377 SMISAYGM-----NGKGRDAVSLFSRMQDLGLNPDSIAFVSVLSACSHAGLLDEGRYYFK 431

Query: 197 LVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEK 256
           L                         + + CK+   I+      +  M+    + G+ ++
Sbjct: 432 L-------------------------MTEECKIVPRIEH-----FVCMVDLLGRAGQVDE 461

Query: 257 ALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMV 316
           A     +M    M+P+   + ALL AC     + +G+   D +        +  +Y  + 
Sbjct: 462 AYGFIKQMP---MEPNERVWGALLSACRVYSNMIIGLLAADQLFQ--LCPEQSGYYVLLS 516

Query: 317 DLLGRAGKLVEAVDL--------IKKMP 336
           ++  +AG+  +   +        IKKMP
Sbjct: 517 NIYAKAGRWEDVTTVRSIMKTKGIKKMP 544


>gi|359497290|ref|XP_002268807.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Vitis vinifera]
          Length = 719

 Score =  400 bits (1027), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 227/549 (41%), Positives = 309/549 (56%), Gaps = 51/549 (9%)

Query: 42  NIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK-- 99
           N +L+    N D   A   F+    I+D  SWN+MI  + Q +  +KA  LF  M  +  
Sbjct: 177 NALLTYYGKNGDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGL 236

Query: 100 -------------------------------------NSVSWSAMISGYIECGQ-LDKAV 121
                                                NS   S +I  Y +CG  +    
Sbjct: 237 NVDMFTLASVLTAFTCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCR 296

Query: 122 ELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLG 181
           ++F+      +V W  M+SGY +       + ED L+  R M G+G RPN  S   V+  
Sbjct: 297 KVFEEITEPDLVLWNTMVSGYSQ----NEEFLEDALECFRQMQGIGYRPNDCSFVCVISA 352

Query: 182 CSHLSSLQLGKQVHQLVFKSPLCKDTTAL-TPLISMYCKCGDLEDACKLFLEIQRKDVVT 240
           CS+LSS   GKQ+H L  KS +  +  ++   LI+MY KCG+L+DA +LF  +   + V+
Sbjct: 353 CSNLSSPSQGKQIHSLALKSDIPSNRISVDNALIAMYSKCGNLQDARRLFDRMAEHNTVS 412

Query: 241 WNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV 300
            N+MI+GYAQHG   ++L LF  M +  + P SITF+++L AC H G V+ G  YF+ M 
Sbjct: 413 LNSMIAGYAQHGIEMESLHLFQWMLERQIAPTSITFISVLSACAHTGRVEEGWNYFNMMK 472

Query: 301 NDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLA 360
             + I  + +HY+CM+DLLGRAGKL EA +LI +MPF P    + +LL ACR H  ++LA
Sbjct: 473 EKFNIEPEAEHYSCMIDLLGRAGKLSEAENLIARMPFNPGSIGWASLLGACRTHGNIELA 532

Query: 361 EFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGT 420
             AA  +  L P+NAA  YV L+N+YA+  +W++VA +R  M++  V K PG SWIEV  
Sbjct: 533 VKAANQVLQLEPSNAAP-YVVLSNMYASAGRWEEVATVRKFMRDRGVKKKPGCSWIEVKK 591

Query: 421 VVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFAL----HAVGEEVKEQLLLF 476
            +H F + D  HP +  I+E L+E+  +MK AGYVPD+ +AL       G E KE  L  
Sbjct: 592 RIHVFVAEDSSHPMIKEIYEFLEEMSGKMKRAGYVPDVRWALVKDDGTRGGE-KEIRLGH 650

Query: 477 HSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKD 536
           HSEKLA+AFGLI    G P+ V KNLR+CGDCH A K+ISAI  REI VRD  RFH FK+
Sbjct: 651 HSEKLAVAFGLISTKDGEPVLVVKNLRICGDCHNAIKFISAIAGREITVRDAHRFHCFKE 710

Query: 537 GTCSCGDYW 545
           G CSCGDYW
Sbjct: 711 GQCSCGDYW 719



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 71/278 (25%), Positives = 129/278 (46%), Gaps = 9/278 (3%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVV 133
           N  I  + +   +A AR  F  + + N  S++A+I+ Y +  +   A +LF   P   +V
Sbjct: 47  NHFILLYSKCGRLAWARKAFQDISDPNVFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLV 106

Query: 134 AWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ 193
           ++  +IS Y   G    +     L L   M  +G+  +  +LS+V+  C     + L  Q
Sbjct: 107 SYNTLISAYADCGETAPA-----LGLFSGMREMGLDMDGFTLSAVITAC--CDDVGLIGQ 159

Query: 194 VHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR-KDVVTWNAMISGYAQHG 252
           +H +   S      +    L++ Y K GDL+DA ++F  +   +D V+WN+MI  Y QH 
Sbjct: 160 LHSVAVSSGFDSYVSVNNALLTYYGKNGDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQ 219

Query: 253 KGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY 312
           +G KAL LF +M   G+  D  T  ++L A      +  G+Q+   ++   G        
Sbjct: 220 EGSKALGLFQEMVRRGLNVDMFTLASVLTAFTCLEDLSGGLQFHGQLIKT-GFHQNSHVG 278

Query: 313 TCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSA 350
           + ++DL  + G  +     + +   +P   ++ T++S 
Sbjct: 279 SGLIDLYSKCGGGMSDCRKVFEEITEPDLVLWNTMVSG 316



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 61/144 (42%), Gaps = 32/144 (22%)

Query: 178 VLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCG----------DLED-- 225
           +L  C     L  GK +H L  KS +   T      I +Y KCG          D+ D  
Sbjct: 14  LLKTCIAERDLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQDISDPN 73

Query: 226 -------------------ACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKD 266
                              A +LF +I   D+V++N +IS YA  G+   AL LF  M++
Sbjct: 74  VFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSGMRE 133

Query: 267 EGMKPDSITFVALLLA-CNHAGLV 289
            G+  D  T  A++ A C+  GL+
Sbjct: 134 MGLDMDGFTLSAVITACCDDVGLI 157


>gi|225464414|ref|XP_002269452.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Vitis vinifera]
          Length = 594

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 214/554 (38%), Positives = 327/554 (59%), Gaps = 54/554 (9%)

Query: 35  QPDVVSYNIMLS----CILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKAR 90
           + D ++ N++++    C L+ S     A   F  +P++   SWNTM+    Q  +  KA 
Sbjct: 52  RADTITSNMLMNMYSKCGLVES-----ARKLFDEMPVRSLVSWNTMVGSHTQNGDCEKAL 106

Query: 91  DLFLAMPEK---------------------------------------NSVSWSAMISGY 111
            LF+ M ++                                       N    +A++  Y
Sbjct: 107 VLFMQMQKEGTSCSEFTVSSVVCACAAKCCVFECKQLHGFALKTALDSNVFVGTALLDVY 166

Query: 112 IECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPN 171
            +CG +  A  +F+  P +S V W++M++GY     V+N   E+ L L      +G+  N
Sbjct: 167 AKCGLVKDANLVFECMPERSDVTWSSMVAGY-----VQNELYEEALVLFHRAQAMGLEHN 221

Query: 172 ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFL 231
             ++SS L  C+  ++L  GKQV  +  K+ +  +   ++ LI MY KCG +E+A  +F 
Sbjct: 222 QFTISSALSACAARAALIEGKQVQAVSCKTGIGSNIFVISSLIDMYAKCGIIEEAYTVFS 281

Query: 232 EIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDL 291
            ++ K+VV WNA++SG+++H +  +A+  F+KM+  G+ P+ IT++++L AC+H GLV+ 
Sbjct: 282 SVEEKNVVLWNAILSGFSRHVRSLEAMIYFEKMQQMGICPNDITYISVLSACSHLGLVEK 341

Query: 292 GIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSAC 351
           G +YFD M+  + ++    HY+CMVD+LGRAG L EA D I +MPF    +++G+LL++C
Sbjct: 342 GRKYFDLMIRVHNVSPNVLHYSCMVDILGRAGLLHEAKDFIDRMPFDATASMWGSLLASC 401

Query: 352 RVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMP 411
           R+++ L+LAE AA +LF + P N AG +V L+NIYAA  +W++VAR R  +KE+   K  
Sbjct: 402 RIYRNLELAEVAAKHLFEIEPHN-AGNHVLLSNIYAANDRWEEVARARNLLKESKAKKER 460

Query: 412 GYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKE 471
           G SWIE+   VH F  G+R HP +V I+ KL++L   MK  GY    E  LH V E  K+
Sbjct: 461 GKSWIEIKHKVHSFMVGERNHPRIVEIYLKLEDLVGEMKKIGYKAKTEHDLHDVEESRKQ 520

Query: 472 QLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRF 531
           +LL  HSEKLA+ FG++ +P G PIR+ KNLR+CGDCH   K  S+I +REIIVRDT RF
Sbjct: 521 ELLRHHSEKLALTFGIMVLPHGAPIRIMKNLRICGDCHSFMKLASSITEREIIVRDTNRF 580

Query: 532 HHFKDGTCSCGDYW 545
           HHFK+G CSCG++W
Sbjct: 581 HHFKNGYCSCGEFW 594



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 43/128 (33%), Positives = 65/128 (50%), Gaps = 13/128 (10%)

Query: 169 RPNASSLSSVLLGCSHLSSLQL-------------GKQVHQLVFKSPLCKDTTALTPLIS 215
           RP++  L  V +  +H+S LQ              G   H  + +  L  DT     L++
Sbjct: 4   RPSSKELVWVGIRATHVSELQHLLQSSARNRAAIEGMACHAQIIRVGLRADTITSNMLMN 63

Query: 216 MYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSIT 275
           MY KCG +E A KLF E+  + +V+WN M+  + Q+G  EKAL LF +M+ EG      T
Sbjct: 64  MYSKCGLVESARKLFDEMPVRSLVSWNTMVGSHTQNGDCEKALVLFMQMQKEGTSCSEFT 123

Query: 276 FVALLLAC 283
             +++ AC
Sbjct: 124 VSSVVCAC 131


>gi|302786698|ref|XP_002975120.1| hypothetical protein SELMODRAFT_102603 [Selaginella moellendorffii]
 gi|300157279|gb|EFJ23905.1| hypothetical protein SELMODRAFT_102603 [Selaginella moellendorffii]
          Length = 485

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 200/484 (41%), Positives = 306/484 (63%), Gaps = 12/484 (2%)

Query: 68  KDTASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMISGYIECGQLDKAVEL 123
           ++  ++ T++SGF    ++ + R +   +     E + +  +A+++ Y +C  +++A   
Sbjct: 8   RNKVTYVTVLSGFTTPGSLEEGRRVHSRVAGAGLEVDVIVGTALVNMYGKCQSVEEARAA 67

Query: 124 FKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGL--GIRPNASSLSSVLLG 181
           F+     +VV+W+AM++ Y      +N  A   L+L R M     G+ PN  +  ++L  
Sbjct: 68  FEKISRPNVVSWSAMLAAY-----AQNGHARMALELYREMGSARKGMAPNRVTFITLLDA 122

Query: 182 CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTW 241
           CS L +L  G+++H  V +     D      L++ Y +CG L DA  +F  ++R+DV++W
Sbjct: 123 CSFLGALAEGRKIHAAVAERGFDTDLVVCNALVNFYGRCGSLGDAKIVFDGMRRRDVISW 182

Query: 242 NAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN 301
           ++MIS +AQ G+ ++A+ L+ +M  EG  PD I F+++L AC+++G+V+    +F S+V 
Sbjct: 183 SSMISAFAQRGRVDEAMELYHRMLSEGTLPDDIIFISVLFACSNSGVVEASGDFFRSIVG 242

Query: 302 DYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAE 361
           D  +    +HY CMVD+LGRAGKL +A DL++ MPF P P ++ T+LSAC+++  ++  E
Sbjct: 243 DTQVEPTLEHYACMVDVLGRAGKLRDAEDLLRLMPFHPGPLLYMTMLSACKLYTDVERGE 302

Query: 362 FAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTV 421
            AA  +F L+P N++  Y+ LANIY+A K+  D ARIR  M+E  + K PG SWIEV   
Sbjct: 303 AAAEVVFELDPENSSP-YITLANIYSAAKRPKDAARIRKLMEERGIKKKPGCSWIEVLDR 361

Query: 422 VHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKL 481
           VHEF +GD++HP+   I+ +++ L ++MK AGY  D +  L  V E+ KE LL +HSEKL
Sbjct: 362 VHEFIAGDKMHPQRDEIYAEIQRLGRQMKEAGYFQDTKVVLQDVEEDEKENLLWYHSEKL 421

Query: 482 AIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSC 541
           AIAFGLI  P G P+R+ KNLRVC DCH ATK IS +  REI+VRDT RFHHF DG CSC
Sbjct: 422 AIAFGLISTPPGAPLRIVKNLRVCSDCHAATKVISKVTGREILVRDTNRFHHFLDGMCSC 481

Query: 542 GDYW 545
            DYW
Sbjct: 482 NDYW 485



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/220 (30%), Positives = 110/220 (50%), Gaps = 35/220 (15%)

Query: 167 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 226
           G+  N  +  +VL G +   SL+ G++VH  V  + L  D    T L++MY KC  +E+A
Sbjct: 5   GVERNKVTYVTVLSGFTTPGSLEEGRRVHSRVAGAGLEVDVIVGTALVNMYGKCQSVEEA 64

Query: 227 CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKD--EGMKPDSITFVALLLACN 284
              F +I R +VV+W+AM++ YAQ+G    AL L+ +M    +GM P+ +TF+ LL AC+
Sbjct: 65  RAAFEKISRPNVVSWSAMLAAYAQNGHARMALELYREMGSARKGMAPNRVTFITLLDACS 124

Query: 285 -----------HAGLVDLGIQ----YFDSMVNDYGIAA-------------KPD--HYTC 314
                      HA + + G        +++VN YG                + D   ++ 
Sbjct: 125 FLGALAEGRKIHAAVAERGFDTDLVVCNALVNFYGRCGSLGDAKIVFDGMRRRDVISWSS 184

Query: 315 MVDLLGRAGKLVEAVDLIKKMPFK---PQPAIFGTLLSAC 351
           M+    + G++ EA++L  +M  +   P   IF ++L AC
Sbjct: 185 MISAFAQRGRVDEAMELYHRMLSEGTLPDDIIFISVLFAC 224



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/248 (20%), Positives = 109/248 (43%), Gaps = 39/248 (15%)

Query: 23  LKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP------IKDTASWNTM 76
           +++A+  F+KI +P+VVS++ ML+    N    + A + ++ +         +  ++ T+
Sbjct: 61  VEEARAAFEKISRPNVVSWSAMLAAYAQNGHARM-ALELYREMGSARKGMAPNRVTFITL 119

Query: 77  ISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISGYIECGQLDKAVELFKVAPVKSV 132
           +        +A+ R +  A+ E+    + V  +A+++ Y  CG L  A  +F     + V
Sbjct: 120 LDACSFLGALAEGRKIHAAVAERGFDTDLVVCNALVNFYGRCGSLGDAKIVFDGMRRRDV 179

Query: 133 VAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGK 192
           ++W++MIS + + G V     ++ ++L   M+  G  P+     SVL  CS+   ++   
Sbjct: 180 ISWSSMISAFAQRGRV-----DEAMELYHRMLSEGTLPDDIIFISVLFACSNSGVVEASG 234

Query: 193 QVHQLVFK----SPLCKDTTALTPLISMYCKCGDLED-------------------ACKL 229
              + +       P  +    +  ++    K  D ED                   ACKL
Sbjct: 235 DFFRSIVGDTQVEPTLEHYACMVDVLGRAGKLRDAEDLLRLMPFHPGPLLYMTMLSACKL 294

Query: 230 FLEIQRKD 237
           + +++R +
Sbjct: 295 YTDVERGE 302


>gi|15235537|ref|NP_195454.1| Tetratricopeptide repeat (TPR)-like superfamily protein
           [Arabidopsis thaliana]
 gi|75213666|sp|Q9SZT8.1|PP354_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g37380, chloroplastic; Flags: Precursor
 gi|4468804|emb|CAB38205.1| putative protein [Arabidopsis thaliana]
 gi|7270720|emb|CAB80403.1| putative protein [Arabidopsis thaliana]
 gi|332661386|gb|AEE86786.1| Tetratricopeptide repeat (TPR)-like superfamily protein
           [Arabidopsis thaliana]
          Length = 632

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 201/472 (42%), Positives = 295/472 (62%), Gaps = 8/472 (1%)

Query: 76  MISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAW 135
           ++  + +  ++  A+ +F  MPE++ VS +AMI+ Y + G ++ A  LF     + +V+W
Sbjct: 167 LVDVYAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDSMCERDIVSW 226

Query: 136 TAMISGYMKFGYVENSWAEDGLKLLRMMIGLG-IRPNASSLSSVLLGCSHLSSLQLGKQV 194
             MI GY + G+       D L L + ++  G  +P+  ++ + L  CS + +L+ G+ +
Sbjct: 227 NVMIDGYAQHGF-----PNDALMLFQKLLAEGKPKPDEITVVAALSACSQIGALETGRWI 281

Query: 195 HQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKG 254
           H  V  S +  +    T LI MY KCG LE+A  +F +  RKD+V WNAMI+GYA HG  
Sbjct: 282 HVFVKSSRIRLNVKVCTGLIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMIAGYAMHGYS 341

Query: 255 EKALRLFDKMKD-EGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYT 313
           + ALRLF++M+   G++P  ITF+  L AC HAGLV+ GI+ F+SM  +YGI  K +HY 
Sbjct: 342 QDALRLFNEMQGITGLQPTDITFIGTLQACAHAGLVNEGIRIFESMGQEYGIKPKIEHYG 401

Query: 314 CMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPA 373
           C+V LLGRAG+L  A + IK M       ++ ++L +C++H    L +  A  L  LN  
Sbjct: 402 CLVSLLGRAGQLKRAYETIKNMNMDADSVLWSSVLGSCKLHGDFVLGKEIAEYLIGLNIK 461

Query: 374 NAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHP 433
           N+ G YV L+NIYA++  ++ VA++R  MKE  +VK PG S IE+   VHEFR+GDR H 
Sbjct: 462 NS-GIYVLLSNIYASVGDYEGVAKVRNLMKEKGIVKEPGISTIEIENKVHEFRAGDREHS 520

Query: 434 ELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLG 493
           +   I+  L+++ +R+K  GYVP+    L  + E  KEQ L  HSE+LAIA+GLI    G
Sbjct: 521 KSKEIYTMLRKISERIKSHGYVPNTNTVLQDLEETEKEQSLQVHSERLAIAYGLISTKPG 580

Query: 494 TPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           +P+++FKNLRVC DCH  TK IS I  R+I++RD  RFHHF DG+CSCGD+W
Sbjct: 581 SPLKIFKNLRVCSDCHTVTKLISKITGRKIVMRDRNRFHHFTDGSCSCGDFW 632



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 81/266 (30%), Positives = 114/266 (42%), Gaps = 52/266 (19%)

Query: 110 GYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLK-----LLRMMI 164
            Y   G++  ++ LF       +  +TA I          N+ + +GLK     L   ++
Sbjct: 73  AYASHGKIRHSLALFHQTIDPDLFLFTAAI----------NTASINGLKDQAFLLYVQLL 122

Query: 165 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 224
              I PN  + SS+L  CS  S    GK +H  V K  L  D    T L+ +Y K GD+ 
Sbjct: 123 SSEINPNEFTFSSLLKSCSTKS----GKLIHTHVLKFGLGIDPYVATGLVDVYAKGGDVV 178

Query: 225 DACKLF-----------------------LEIQR--------KDVVTWNAMISGYAQHGK 253
            A K+F                       +E  R        +D+V+WN MI GYAQHG 
Sbjct: 179 SAQKVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGF 238

Query: 254 GEKALRLFDKMKDEGM-KPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY 312
              AL LF K+  EG  KPD IT VA L AC+  G ++ G ++    V    I       
Sbjct: 239 PNDALMLFQKLLAEGKPKPDEITVVAALSACSQIGALETG-RWIHVFVKSSRIRLNVKVC 297

Query: 313 TCMVDLLGRAGKLVEAVDLIKKMPFK 338
           T ++D+  + G L EAV +    P K
Sbjct: 298 TGLIDMYSKCGSLEEAVLVFNDTPRK 323



 Score = 85.1 bits (209), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 69/275 (25%), Positives = 119/275 (43%), Gaps = 49/275 (17%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G +  AQ++FD++P+  +VS   M++C      +V AA   F  +  +D  SWN MI G+
Sbjct: 175 GDVVSAQKVFDRMPERSLVSSTAMITC-YAKQGNVEAARALFDSMCERDIVSWNVMIDGY 233

Query: 81  VQKKNMAKARDLFLAM-----PEKNSVS------------------W------------- 104
            Q      A  LF  +     P+ + ++                  W             
Sbjct: 234 AQHGFPNDALMLFQKLLAEGKPKPDEITVVAALSACSQIGALETGRWIHVFVKSSRIRLN 293

Query: 105 ----SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLL 160
               + +I  Y +CG L++AV +F   P K +VAW AMI+GY   GY     ++D L+L 
Sbjct: 294 VKVCTGLIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMIAGYAMHGY-----SQDALRLF 348

Query: 161 RMMIGL-GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTA-LTPLISMYC 218
             M G+ G++P   +    L  C+H   +  G ++ + + +    K        L+S+  
Sbjct: 349 NEMQGITGLQPTDITFIGTLQACAHAGLVNEGIRIFESMGQEYGIKPKIEHYGCLVSLLG 408

Query: 219 KCGDLEDACKLFLEIQRK-DVVTWNAMISGYAQHG 252
           + G L+ A +    +    D V W++++     HG
Sbjct: 409 RAGQLKRAYETIKNMNMDADSVLWSSVLGSCKLHG 443


>gi|224069617|ref|XP_002303012.1| predicted protein [Populus trichocarpa]
 gi|222844738|gb|EEE82285.1| predicted protein [Populus trichocarpa]
          Length = 815

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 206/538 (38%), Positives = 321/538 (59%), Gaps = 15/538 (2%)

Query: 16  FAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPI----KDTA 71
           F  +   + + ++LF+++P+ D VSYN++++        V  + D FQ L      +   
Sbjct: 285 FYSKHDCVNEVRKLFNEMPELDGVSYNVIITAYAW-VGKVKESIDLFQELQFTTFDRKNF 343

Query: 72  SWNTMISGFVQKKNMAKARDL----FLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVA 127
            + TM+S      ++   R L     ++M + +    ++++  Y +CG+ ++A  +F   
Sbjct: 344 PFPTMLSIAASSLDLQMGRQLHAQVVVSMADPDFRVSNSLVDMYAKCGKFEEADRIFLRL 403

Query: 128 PVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSS 187
             +S V WTAMIS  ++ G  EN     GLKL   M    +  + ++ + VL   ++L+S
Sbjct: 404 SSRSTVPWTAMISANVQRGLHEN-----GLKLFYEMRRANVSADQATFACVLKASANLAS 458

Query: 188 LQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISG 247
           + LGKQ+H  V +S    +  +   L+ MY  C  ++DA K F E+  ++VVTWNA++S 
Sbjct: 459 ILLGKQLHSCVIRSGFM-NVYSGCALLDMYANCASIKDAIKTFEEMSERNVVTWNALLSA 517

Query: 248 YAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAA 307
           YAQ+G G+  L+ F++M   G +PDS++F+ +L AC+H  LV+ G++YF+ M   Y +A 
Sbjct: 518 YAQNGDGKGTLKSFEEMIMSGYQPDSVSFLCILTACSHCRLVEEGLKYFNDMSGVYNLAP 577

Query: 308 KPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNL 367
           K +HYT MVD L R+G+  EA  L+ +MPF+P   ++ ++L++CR+HK   LA  AA  L
Sbjct: 578 KREHYTAMVDALCRSGRFDEAEKLMGQMPFEPDEIVWTSVLNSCRIHKNYALARKAAGQL 637

Query: 368 FNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRS 427
           FN+     A  YV ++NI+A   +WD V +++ +M++  V K+P YSW+E+   VH F +
Sbjct: 638 FNMKVLRDAAPYVTMSNIFAEAGQWDSVVKVKKAMRDRGVRKLPAYSWVEIKHKVHVFSA 697

Query: 428 GDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGL 487
            D  HP+ + I  K++ L ++M+  GY PD+  A   V +E K   L +HSE+LAIAF L
Sbjct: 698 NDDKHPQQLEILRKIEMLAEQMEKEGYDPDISCAHQNVDKESKIDSLKYHSERLAIAFAL 757

Query: 488 IKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           I  P G+PI V KNLR C DCH A K IS I  REI VRD+ RFHHF+DG+CSCGDYW
Sbjct: 758 INTPEGSPILVMKNLRACTDCHAAIKVISKIVGREITVRDSNRFHHFRDGSCSCGDYW 815



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 74/213 (34%), Positives = 112/213 (52%), Gaps = 5/213 (2%)

Query: 70  TASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPV 129
           T+ +N MI    ++  + +AR L   MP +NS S   +ISGY++ G L  A  +F     
Sbjct: 43  TSRFNFMIKDLSERGQLCQARQLLDQMPNRNSFSIDIIISGYVKSGNLTVARRIFDDTDE 102

Query: 130 KSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQ 189
           ++VVAWT MI  Y K     N +  D  KL   M   G +P+  +  ++L GC+ L   +
Sbjct: 103 RTVVAWTTMIGAYSK----SNRFG-DAFKLFAEMHRSGSQPDYVTYITLLTGCNDLEVAK 157

Query: 190 LGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYA 249
              Q H  + K     +      L+  Y K G L+ A +LFLE+   D V++N MI+GYA
Sbjct: 158 ELYQAHAQIVKLGHHLNHRVCNTLLDSYFKTGGLDSARRLFLEMCGWDSVSFNVMITGYA 217

Query: 250 QHGKGEKALRLFDKMKDEGMKPDSITFVALLLA 282
            +G  E+A+ LF +M++ G KP   TF A++ A
Sbjct: 218 NNGLNEEAIELFVEMQNLGFKPSDFTFAAVISA 250



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 79/351 (22%), Positives = 143/351 (40%), Gaps = 50/351 (14%)

Query: 19  QRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMIS 78
           +RG+L  A++L D++P  +  S +I++S   + S ++  A   F     +   +W TMI 
Sbjct: 55  ERGQLCQARQLLDQMPNRNSFSIDIIISG-YVKSGNLTVARRIFDDTDERTVVAWTTMIG 113

Query: 79  GFVQKKNMAKARDLFLAMPEKNS----VSWSAMISG------------------------ 110
            + +      A  LF  M    S    V++  +++G                        
Sbjct: 114 AYSKSNRFGDAFKLFAEMHRSGSQPDYVTYITLLTGCNDLEVAKELYQAHAQIVKLGHHL 173

Query: 111 -----------YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKL 159
                      Y + G LD A  LF       +  W ++    M  GY  N   E+ ++L
Sbjct: 174 NHRVCNTLLDSYFKTGGLDSARRLFL-----EMCGWDSVSFNVMITGYANNGLNEEAIEL 228

Query: 160 LRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCK 219
              M  LG +P+  + ++V+     L     G+Q+H  V K+   ++       +  Y K
Sbjct: 229 FVEMQNLGFKPSDFTFAAVISASVGLDDTAFGQQIHGFVVKTSFIRNVFVGNAFLDFYSK 288

Query: 220 CGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVAL 279
              + +  KLF E+   D V++N +I+ YA  GK ++++ LF +++       +  F  +
Sbjct: 289 HDCVNEVRKLFNEMPELDGVSYNVIITAYAWVGKVKESIDLFQELQFTTFDRKNFPFPTM 348

Query: 280 LLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY--TCMVDLLGRAGKLVEA 328
           L     +  + +G Q    +V      A PD      +VD+  + GK  EA
Sbjct: 349 LSIAASSLDLQMGRQLHAQVVVSM---ADPDFRVSNSLVDMYAKCGKFEEA 396


>gi|357118962|ref|XP_003561216.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 900

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 218/536 (40%), Positives = 319/536 (59%), Gaps = 22/536 (4%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRL-----PIKDTASWNT 75
           G +  A+++FD +   + VS+N M+     N D    A   F+R+      + D +    
Sbjct: 376 GAVDSARKVFDGMQDRNSVSWNAMIKGYAENGD-ATEALALFKRMVGEGVDVTDVSVLAA 434

Query: 76  MIS----GFVQKKNMAKARDLFLAMP-EKNSVSWSAMISGYIECGQLDKAVELFKVAPVK 130
           + +    GF+ +    +  +L + +  E N    +A+I+ Y +C + D A ++F     K
Sbjct: 435 LHACGELGFLDEGR--RVHELLVRIGLESNVNVMNALITMYCKCKRTDLAAQVFDELGYK 492

Query: 131 SVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQL 190
           + V+W AMI      G  +N  +ED ++L   M    ++P++ +L S++   + +S    
Sbjct: 493 TRVSWNAMI-----LGCTQNGSSEDAVRLFSRMQLENVKPDSFTLVSIIPALADISDPLQ 547

Query: 191 GKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQ 250
            + +H    +  L +D   LT LI MY KCG +  A  LF   + + V+TWNAMI GY  
Sbjct: 548 ARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVSIARSLFNSARDRHVITWNAMIHGYGS 607

Query: 251 HGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPD 310
           HG G+ A+ LF++MK  G  P+  TF+++L AC+HAGLVD G +YF SM  DYG+    +
Sbjct: 608 HGSGKVAVELFEEMKSSGKVPNETTFLSVLSACSHAGLVDEGQEYFSSMKEDYGLEPGME 667

Query: 311 HYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNL 370
           HY  MVDLLGRAGKL EA   I+KMP +P  +++G +L AC++HK ++LAE +A  +F L
Sbjct: 668 HYGTMVDLLGRAGKLHEAWSFIQKMPMEPGISVYGAMLGACKLHKNVELAEESAQRIFEL 727

Query: 371 NPANAAGCY-VQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGD 429
            P    G Y V LANIYA    W DVAR+R +M++  + K PG+S +++   +H F SG 
Sbjct: 728 EPEE--GVYHVLLANIYANASLWKDVARVRTAMEKKGLQKTPGWSIVQLKNEIHTFYSGS 785

Query: 430 RVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIK 489
             H +   I+ +L +L + +K  GYVPD + ++H V ++VK QLL  HSEKLAIA+GLI+
Sbjct: 786 TNHQQAKDIYARLAKLIEEIKAVGYVPDTD-SIHDVEDDVKAQLLNTHSEKLAIAYGLIR 844

Query: 490 VPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
              GT I++ KNLRVC DCH ATK IS +  REII+RD  RFHHFKDG CSCGDYW
Sbjct: 845 TAPGTTIQIKKNLRVCKDCHNATKLISLVTGREIIMRDIQRFHHFKDGKCSCGDYW 900



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 96/330 (29%), Positives = 165/330 (50%), Gaps = 27/330 (8%)

Query: 16  FAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK-----DT 70
           +AK R +  DA+ +FD++P  D V++N +++    N     AA     R+  +     D 
Sbjct: 270 YAKCR-RPGDARRVFDRMPARDRVAWNALVAGYARNG-LAEAAVGMVVRMQEEDGERPDA 327

Query: 71  ASWNTMISGFVQKKNMAKARDLFL-----AMPEKNSVSWSAMISGYIECGQLDKAVELFK 125
            +  +++      + +   R++          E+ +VS +A++  Y +CG +D A ++F 
Sbjct: 328 VTLVSVLPACADAQALGACREVHAFAVRGGFDEQVNVS-TAILDVYCKCGAVDSARKVFD 386

Query: 126 VAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHL 185
               ++ V+W AMI      GY EN  A + L L + M+G G+     S+ + L  C  L
Sbjct: 387 GMQDRNSVSWNAMIK-----GYAENGDATEALALFKRMVGEGVDVTDVSVLAALHACGEL 441

Query: 186 SSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMI 245
             L  G++VH+L+ +  L  +   +  LI+MYCKC   + A ++F E+  K  V+WNAMI
Sbjct: 442 GFLDEGRRVHELLVRIGLESNVNVMNALITMYCKCKRTDLAAQVFDELGYKTRVSWNAMI 501

Query: 246 SGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGI 305
            G  Q+G  E A+RLF +M+ E +KPDS T V+++ A     L D+        ++ Y I
Sbjct: 502 LGCTQNGSSEDAVRLFSRMQLENVKPDSFTLVSIIPA-----LADISDPLQARWIHGYSI 556

Query: 306 AAKPDH----YTCMVDLLGRAGKLVEAVDL 331
               D      T ++D+  + G++  A  L
Sbjct: 557 RLHLDQDVYVLTALIDMYAKCGRVSIARSL 586



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 77/277 (27%), Positives = 142/277 (51%), Gaps = 8/277 (2%)

Query: 97  PEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDG 156
           PE  +++ +A+ + Y +C +   A  +F   P +  VAW A+++GY + G  E   A  G
Sbjct: 258 PE--ALAATALANMYAKCRRPGDARRVFDRMPARDRVAWNALVAGYARNGLAE---AAVG 312

Query: 157 LKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISM 216
           + ++RM    G RP+A +L SVL  C+   +L   ++VH    +    +     T ++ +
Sbjct: 313 M-VVRMQEEDGERPDAVTLVSVLPACADAQALGACREVHAFAVRGGFDEQVNVSTAILDV 371

Query: 217 YCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITF 276
           YCKCG ++ A K+F  +Q ++ V+WNAMI GYA++G   +AL LF +M  EG+    ++ 
Sbjct: 372 YCKCGAVDSARKVFDGMQDRNSVSWNAMIKGYAENGDATEALALFKRMVGEGVDVTDVSV 431

Query: 277 VALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 336
           +A L AC   G +D G +  + +V   G+ +  +    ++ +  +  +   A  +  ++ 
Sbjct: 432 LAALHACGELGFLDEGRRVHELLVR-IGLESNVNVMNALITMYCKCKRTDLAAQVFDELG 490

Query: 337 FKPQPAIFGTLLSACRVHKRLDLAE-FAAMNLFNLNP 372
           +K + +    +L   +     D    F+ M L N+ P
Sbjct: 491 YKTRVSWNAMILGCTQNGSSEDAVRLFSRMQLENVKP 527



 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 42/121 (34%), Positives = 70/121 (57%), Gaps = 1/121 (0%)

Query: 167 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 226
           G  P   + +S+L  C+  + L  G+ VH  +    L  +  A T L +MY KC    DA
Sbjct: 220 GSGPVLRTFTSLLKLCAARADLATGRAVHAQLAARGLSPEALAATALANMYAKCRRPGDA 279

Query: 227 CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE-GMKPDSITFVALLLACNH 285
            ++F  +  +D V WNA+++GYA++G  E A+ +  +M++E G +PD++T V++L AC  
Sbjct: 280 RRVFDRMPARDRVAWNALVAGYARNGLAEAAVGMVVRMQEEDGERPDAVTLVSVLPACAD 339

Query: 286 A 286
           A
Sbjct: 340 A 340


>gi|326488767|dbj|BAJ97995.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 919

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 207/543 (38%), Positives = 312/543 (57%), Gaps = 13/543 (2%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNS--DDVVAAFDFFQRLPI 67
           + VL     + G L  A+ + + +   DVVS+  M++  + +    + +  F   Q   I
Sbjct: 383 SGVLIDMYSKYGWLDKARRILEVLEAKDVVSWTSMIAGYVQHEFCKEALETFKDMQLFGI 442

Query: 68  -KDTASWNTMISGFVQKKNMAKARDL----FLAMPEKNSVSWSAMISGYIECGQLDKAVE 122
             D     + IS     K M + + +    +++    +   W+A+++ Y  CG+  +A  
Sbjct: 443 WPDNIGLASAISACAGIKAMRQGQQIHSRVYVSGYSADVSIWNALVNLYARCGRSKEAFS 502

Query: 123 LFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGC 182
           LF+    K  + W  M+SG+ + G  E     + L++   M   G++ N  +  S +   
Sbjct: 503 LFEAIEHKDKITWNGMVSGFAQSGLYE-----EALEVFIKMYQAGVKYNVFTFVSSISAS 557

Query: 183 SHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWN 242
           ++L+ ++ GKQ+H  V K+    +T     LIS+Y KCG +EDA   F E+  ++ V+WN
Sbjct: 558 ANLADIKQGKQIHATVIKTGCTSETEVANALISLYGKCGSIEDAKMQFFEMSERNHVSWN 617

Query: 243 AMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVND 302
            +I+  +QHG G +AL LFD+MK EG+KP+ +TF+ +L AC+H GLV+ G+ YF SM ++
Sbjct: 618 TIITSCSQHGWGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLGYFKSMSSE 677

Query: 303 YGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEF 362
           +GI  +PDHY C+VD+LGRAG+L  A   +++MP      ++ TLLSACRVHK +++ E 
Sbjct: 678 HGIHPRPDHYACVVDILGRAGQLDRARKFVEEMPVSANAMVWRTLLSACRVHKNIEIGEL 737

Query: 363 AAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVV 422
           AA  L  L P ++A  YV L+N YA   KW     +R  MK+  V K PG SWIEV  VV
Sbjct: 738 AAKYLLELEPHDSAS-YVLLSNAYAVTGKWACRDHVRKMMKDRGVRKEPGRSWIEVKNVV 796

Query: 423 HEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLA 482
           H F  GDR+HP    I++ L +L+ R+   GY+    F  H   +E K+     HSEKLA
Sbjct: 797 HAFFVGDRLHPLAHQIYKYLADLDDRLAKIGYIQGNYFLFHEKEKEQKDPTAFVHSEKLA 856

Query: 483 IAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCG 542
           +AFGL+ +P   P+RV KNLRVC DCH   K+ S +  REI++RD  RFHHF +G CSCG
Sbjct: 857 VAFGLMSLPPSMPLRVIKNLRVCNDCHTWMKFTSEVMGREIVLRDVYRFHHFNNGNCSCG 916

Query: 543 DYW 545
           D+W
Sbjct: 917 DFW 919



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 97/367 (26%), Positives = 164/367 (44%), Gaps = 55/367 (14%)

Query: 99  KNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLK 158
           ++ ++ + +I  Y + G + +A  +F+    +  V+W AM+SGY +     N   E+ + 
Sbjct: 75  EDRIAGNLLIDLYAKKGLVQRARRVFEQLSARDNVSWVAMLSGYAR-----NGLGEEAVG 129

Query: 159 LLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYC 218
           L   M   G+ P    LSSVL  C+  +  + G+ VH  V+K   C +T     LI++Y 
Sbjct: 130 LYHQMHCSGVVPTPYVLSSVLSACTKAALFEQGRLVHAQVYKQGSCSETVVGNALIALYL 189

Query: 219 KCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVA 278
           + G L  A ++F E+   D VT+N +IS +AQ G GE AL +F++M+  G  PD +T  +
Sbjct: 190 RFGSLSLAERVFSEMPYCDRVTFNTLISRHAQCGNGESALEIFEEMRLSGWTPDCVTIAS 249

Query: 279 LLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYT--CMVDLLGRAGKLVEAVDLIKK-- 334
           LL AC   G ++ G Q    ++        PD+     ++DL  + G +VEA+++ K   
Sbjct: 250 LLAACASIGDLNKGKQLHSYLLK---AGMSPDYIIEGSLLDLYVKCGVIVEALEIFKSGD 306

Query: 335 --------------------------------MPFKPQPAIFGTLLSACRVHKRLDLAEF 362
                                              +P    +  LL  C     ++L E 
Sbjct: 307 RTNVVLWNLMLVAYGQISDLAKSFDLFCQMVAAGVRPNEFTYPCLLRTCTYAGEINLGE- 365

Query: 363 AAMNLFNLNPANAAGCYVQ--LANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEV-- 418
             ++L ++     +  YV   L ++Y+     D   RI   ++  +VV     SW  +  
Sbjct: 366 -QIHLLSIKTGFESDMYVSGVLIDMYSKYGWLDKARRILEVLEAKDVV-----SWTSMIA 419

Query: 419 GTVVHEF 425
           G V HEF
Sbjct: 420 GYVQHEF 426



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 96/428 (22%), Positives = 200/428 (46%), Gaps = 66/428 (15%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDK------IPQPDVVSYNIMLSCI---LLN 51
           ++ +  V+W ++L+G+A+  G  ++A  L+ +      +P P V+S +++ +C    L  
Sbjct: 103 LSARDNVSWVAMLSGYARN-GLGEEAVGLYHQMHCSGVVPTPYVLS-SVLSACTKAALFE 160

Query: 52  SDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGY 111
              +V A   +++    +T   N +I+ +++  +++ A  +F  MP  + V+++ +IS +
Sbjct: 161 QGRLVHA-QVYKQGSCSETVVGNALIALYLRFGSLSLAERVFSEMPYCDRVTFNTLISRH 219

Query: 112 IECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPN 171
            +CG  + A+E+F+   +     WT                                 P+
Sbjct: 220 AQCGNGESALEIFEEMRLS---GWT---------------------------------PD 243

Query: 172 ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFL 231
             +++S+L  C+ +  L  GKQ+H  + K+ +  D      L+ +Y KCG + +A ++F 
Sbjct: 244 CVTIASLLAACASIGDLNKGKQLHSYLLKAGMSPDYIIEGSLLDLYVKCGVIVEALEIFK 303

Query: 232 EIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDL 291
              R +VV WN M+  Y Q     K+  LF +M   G++P+  T+  LL  C +AG ++L
Sbjct: 304 SGDRTNVVLWNLMLVAYGQISDLAKSFDLFCQMVAAGVRPNEFTYPCLLRTCTYAGEINL 363

Query: 292 GIQ-YFDSMVNDYGIAAKPDHYT--CMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLL 348
           G Q +  S+   +    + D Y    ++D+  + G L +A  +++ +  K   + + +++
Sbjct: 364 GEQIHLLSIKTGF----ESDMYVSGVLIDMYSKYGWLDKARRILEVLEAKDVVS-WTSMI 418

Query: 349 SACRVHK--RLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENN 406
           +    H+  +  L  F  M LF + P N          + +A+     +  +R   + ++
Sbjct: 419 AGYVQHEFCKEALETFKDMQLFGIWPDNIG--------LASAISACAGIKAMRQGQQIHS 470

Query: 407 VVKMPGYS 414
            V + GYS
Sbjct: 471 RVYVSGYS 478



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 67/256 (26%), Positives = 118/256 (46%), Gaps = 27/256 (10%)

Query: 194 VHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGK 253
           +H       L +D  A   LI +Y K G ++ A ++F ++  +D V+W AM+SGYA++G 
Sbjct: 64  IHAKAITCGLGEDRIAGNLLIDLYAKKGLVQRARRVFEQLSARDNVSWVAMLSGYARNGL 123

Query: 254 GEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYT 313
           GE+A+ L+ +M   G+ P      ++L AC  A L + G +   + V   G  ++     
Sbjct: 124 GEEAVGLYHQMHCSGVVPTPYVLSSVLSACTKAALFEQG-RLVHAQVYKQGSCSETVVGN 182

Query: 314 CMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAE-----FAAMNLF 368
            ++ L  R G L  A  +  +MP+  +   F TL+S    H +    E     F  M L 
Sbjct: 183 ALIALYLRFGSLSLAERVFSEMPYCDR-VTFNTLISR---HAQCGNGESALEIFEEMRLS 238

Query: 369 NLNPANAAGCYVQLANIYAAMKKWDDVAR--------IRLSMKENNVVKMPGYS-WIEVG 419
              P     C V +A++ AA     D+ +        ++  M  + +++      +++ G
Sbjct: 239 GWTP----DC-VTIASLLAACASIGDLNKGKQLHSYLLKAGMSPDYIIEGSLLDLYVKCG 293

Query: 420 TVVHE---FRSGDRVH 432
            +V     F+SGDR +
Sbjct: 294 VIVEALEIFKSGDRTN 309


>gi|296085345|emb|CBI29077.3| unnamed protein product [Vitis vinifera]
          Length = 671

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 216/552 (39%), Positives = 324/552 (58%), Gaps = 29/552 (5%)

Query: 9   WNSVLAGFAKQRGKLKDAQELFDKIPQ----PDVVSYNIML-SC---------ILLNSDD 54
           +NS++   +  +  L +A  L+  + Q    PD ++Y  ++ +C         +L+++  
Sbjct: 134 YNSLIRALSSSKTPL-EALPLYHTMLQSGLKPDHMTYPFVIKACNESSVTWFGLLVHTHV 192

Query: 55  VVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIEC 114
           V + F+        D+   +++I  +   K++  A+ LF     ++ VSW+AMI GY++ 
Sbjct: 193 VKSGFEC-------DSYIVSSLIHLYANGKDLGAAKQLFNLCSARDVVSWNAMIDGYVKH 245

Query: 115 GQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASS 174
            ++  A  +F     + V++W  MI+GY   G        + L L   M  +G++P  ++
Sbjct: 246 VEMGHARMVFDRMVCRDVISWNTMINGYAICGK-----PNEALALFDQMRAVGVKPTEAT 300

Query: 175 LSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ 234
           + S+L  C+HL +L  G  +H  +  + +  ++   T L+ MY KCG +  A ++F  ++
Sbjct: 301 VVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAME 360

Query: 235 RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ 294
            KDV+ WN +I+G A HG  ++A +LF +MK+ G++P+ ITFVA+L AC+HAG+VD G +
Sbjct: 361 SKDVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAGVEPNDITFVAILSACSHAGMVDEGQK 420

Query: 295 YFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVH 354
             D M + YGI  K +HY C++DLL RAG L EA++LI  MP +P P+  G LL  CR+H
Sbjct: 421 LLDCMSSSYGIEPKVEHYGCVIDLLARAGFLEEAMELIGTMPMEPNPSALGALLGGCRIH 480

Query: 355 KRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYS 414
              +L E     L NL P + +G Y+ L+NIYAA KKWDD  ++R  MK N + K+PG S
Sbjct: 481 GNFELGEMVGKRLINLQPCH-SGRYILLSNIYAAAKKWDDARKVRNLMKVNGISKVPGVS 539

Query: 415 WIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLA-GYVPDLEFALHAVGEEVKEQL 473
            IE+  +VH F +GD  HPE   I+EKL E+  R+K A GY  D    L  + EE KE  
Sbjct: 540 VIELKGMVHRFVAGDWSHPESNKIYEKLNEIHTRLKSAIGYSADTGNVLLDMEEEDKEHA 599

Query: 474 LLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHH 533
           L  HSEKLAIA+GL+ +     IR+ KNLRVC DCH   K IS +  REIIVRD  RFHH
Sbjct: 600 LAVHSEKLAIAYGLLHLDSKEAIRIVKNLRVCRDCHHVIKLISKVYGREIIVRDRNRFHH 659

Query: 534 FKDGTCSCGDYW 545
           F+DG CSC D+W
Sbjct: 660 FEDGECSCLDFW 671



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 71/307 (23%), Positives = 135/307 (43%), Gaps = 46/307 (14%)

Query: 2   NVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLS--CILLNSDDVVAAF 59
           + +  V+WN+++ G+ K   ++  A+ +FD++   DV+S+N M++   I    ++ +A F
Sbjct: 228 SARDVVSWNAMIDGYVKHV-EMGHARMVFDRMVCRDVISWNTMINGYAICGKPNEALALF 286

Query: 60  DFFQRLPIKDT-ASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMISGYIEC 114
           D  + + +K T A+  +++S       + K   L   +     E NS+  +A++  Y +C
Sbjct: 287 DQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKC 346

Query: 115 GQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASS 174
           G++  A ++F     K V+AW  +I+G    G V     ++  +L + M   G+ PN  +
Sbjct: 347 GKISLATQVFNAMESKDVLAWNTIIAGMAIHGNV-----KEAQQLFKEMKEAGVEPNDIT 401

Query: 175 LSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ 234
             ++L  CSH   +  G+++   +  S        + P +  Y    DL           
Sbjct: 402 FVAILSACSHAGMVDEGQKLLDCMSSS------YGIEPKVEHYGCVIDL----------- 444

Query: 235 RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ 294
                         A+ G  E+A+ L   M    M+P+     ALL  C   G  +LG  
Sbjct: 445 -------------LARAGFLEEAMELIGTMP---MEPNPSALGALLGGCRIHGNFELGEM 488

Query: 295 YFDSMVN 301
               ++N
Sbjct: 489 VGKRLIN 495


>gi|168048332|ref|XP_001776621.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672066|gb|EDQ58609.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 703

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 232/619 (37%), Positives = 321/619 (51%), Gaps = 84/619 (13%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKI----PQPDVVSYNIML-------------- 45
           K+  +WN+++AG+ + +   +DA  LF ++     QP+  +Y I+L              
Sbjct: 92  KSGASWNAMIAGYVEHK-HAEDAMRLFREMCHEGVQPNAGTYMIILKACASLSALKWGKE 150

Query: 46  --SCIL---LNSD---------------DVVAAFDFFQRLPIKDTASWNTMISGFVQKKN 85
             +CI    L SD                +  A   F  L   D  SW  MI  + Q  N
Sbjct: 151 VHACIRHGGLESDVRVGTALLRMYGKCGSINEARRIFDNLMNHDIISWTVMIGAYAQSGN 210

Query: 86  MAKARDLFLAMPEK----NSVSW-----------------------------------SA 106
             +A  L L M ++    N++++                                   +A
Sbjct: 211 GKEAYRLMLQMEQEGFKPNAITYVSILNACASEGALKWVKRVHRHALDAGLELDVRVGTA 270

Query: 107 MISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGL 166
           ++  Y + G +D A  +F    V+ VV+W  MI  + + G        +   L   M   
Sbjct: 271 LVQMYAKSGSIDDARVVFDRMKVRDVVSWNVMIGAFAEHGR-----GHEAYDLFLQMQTE 325

Query: 167 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 226
           G +P+A    S+L  C+   +L+  K++H+    S L  D    T L+ MY K G ++DA
Sbjct: 326 GCKPDAIMFLSILNACASAGALEWVKKIHRHALDSGLEVDVRVGTALVHMYSKSGSIDDA 385

Query: 227 CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHA 286
             +F  ++ ++VV+WNAMISG AQHG G+ AL +F +M   G+KPD +TFVA+L AC+HA
Sbjct: 386 RVVFDRMKVRNVVSWNAMISGLAQHGLGQDALEVFRRMTAHGVKPDRVTFVAVLSACSHA 445

Query: 287 GLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGT 346
           GLVD G   + +M   YGI     H  CMVDLLGRAG+L+EA   I  M   P  A +G 
Sbjct: 446 GLVDEGRSQYLAMTQVYGIEPDVSHCNCMVDLLGRAGRLMEAKLFIDNMAVDPDEATWGA 505

Query: 347 LLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENN 406
           LL +CR +  ++L E  A     L+P NAA  YV L+NIYA   KWD V+ +R  M+E  
Sbjct: 506 LLGSCRTYGNVELGELVAKERLKLDPKNAA-TYVLLSNIYAEAGKWDMVSWVRTMMRERG 564

Query: 407 VVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVG 466
           + K PG SWIEV   +H+F   D  HPE   I+E   ++ +++K  GY+PD    L    
Sbjct: 565 IRKEPGRSWIEVDNKIHDFLVADSSHPECKEINESKDKVIEKIKAEGYIPDTRLVLKNKN 624

Query: 467 EEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVR 526
            + KE  +  HSEKLAI +GL+  P G PIRVFKNLRVC DCH ATK IS +E REIIVR
Sbjct: 625 MKDKELDICSHSEKLAIVYGLMHTPPGNPIRVFKNLRVCTDCHGATKLISKVEGREIIVR 684

Query: 527 DTTRFHHFKDGTCSCGDYW 545
           D  RFHHFKDG CSCGDYW
Sbjct: 685 DANRFHHFKDGVCSCGDYW 703



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 109/394 (27%), Positives = 187/394 (47%), Gaps = 42/394 (10%)

Query: 52  SDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARD----LFLAMPEKNSVSWSAM 107
           S+ +V   +  QR  I D+  +  ++   +++K++  A+     +  +  E+N+   + +
Sbjct: 10  SEAIVVLMNRLQRGLITDSFMYVEVLKRCLKQKDLMAAKQVHDCIIKSRMEQNAHVMNNL 69

Query: 108 ISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLG 167
           +  YIECG+L +A  +F     KS  +W AMI+GY     VE+  AED ++L R M   G
Sbjct: 70  LHVYIECGRLQEARCVFDALVKKSGASWNAMIAGY-----VEHKHAEDAMRLFREMCHEG 124

Query: 168 IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC 227
           ++PNA +   +L  C+ LS+L+ GK+VH  +    L  D    T L+ MY KCG + +A 
Sbjct: 125 VQPNAGTYMIILKACASLSALKWGKEVHACIRHGGLESDVRVGTALLRMYGKCGSINEAR 184

Query: 228 KLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG 287
           ++F  +   D+++W  MI  YAQ G G++A RL  +M+ EG KP++IT+V++L AC   G
Sbjct: 185 RIFDNLMNHDIISWTVMIGAYAQSGNGKEAYRLMLQMEQEGFKPNAITYVSILNACASEG 244

Query: 288 L---------------VDLGIQYFDSMVNDYGIAAKPD---------------HYTCMVD 317
                           ++L ++   ++V  Y  +   D                +  M+ 
Sbjct: 245 ALKWVKRVHRHALDAGLELDVRVGTALVQMYAKSGSIDDARVVFDRMKVRDVVSWNVMIG 304

Query: 318 LLGRAGKLVEAVDLIKKMPF---KPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPAN 374
                G+  EA DL  +M     KP   +F ++L+AC     L+  +    +  +     
Sbjct: 305 AFAEHGRGHEAYDLFLQMQTEGCKPDAIMFLSILNACASAGALEWVKKIHRHALDSGLEV 364

Query: 375 AAGCYVQLANIYAAMKKWDDVARIRLSMKENNVV 408
                  L ++Y+     DD   +   MK  NVV
Sbjct: 365 DVRVGTALVHMYSKSGSIDDARVVFDRMKVRNVV 398



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 76/334 (22%), Positives = 136/334 (40%), Gaps = 64/334 (19%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M V+  V+WN ++  FA + G+  +A +LF ++         IM   IL N+     A +
Sbjct: 291 MKVRDVVSWNVMIGAFA-EHGRGHEAYDLFLQMQTEGCKPDAIMFLSIL-NACASAGALE 348

Query: 61  FFQRLPIK--------DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYI 112
           + +++           D      ++  + +  ++  AR +F  M  +N VSW+AMISG  
Sbjct: 349 WVKKIHRHALDSGLEVDVRVGTALVHMYSKSGSIDDARVVFDRMKVRNVVSWNAMISGLA 408

Query: 113 ECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNA 172
           + G    A+E+F                                    R M   G++P+ 
Sbjct: 409 QHGLGQDALEVF------------------------------------RRMTAHGVKPDR 432

Query: 173 SSLSSVLLGCSHLSSLQLGKQVH----QLVFKSPLCKDTTALTPLISMYCKCGDLEDACK 228
            +  +VL  CSH   +  G+  +    Q+    P   D +    ++ +  + G L +A K
Sbjct: 433 VTFVAVLSACSHAGLVDEGRSQYLAMTQVYGIEP---DVSHCNCMVDLLGRAGRLMEA-K 488

Query: 229 LFLE--IQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPD---SITFVALLLAC 283
           LF++      D  TW A++     +G  E    L + +  E +K D   + T+V L    
Sbjct: 489 LFIDNMAVDPDEATWGALLGSCRTYGNVE----LGELVAKERLKLDPKNAATYVLLSNIY 544

Query: 284 NHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVD 317
             AG  D+ + +  +M+ + GI  +P      VD
Sbjct: 545 AEAGKWDM-VSWVRTMMRERGIRKEPGRSWIEVD 577


>gi|357507131|ref|XP_003623854.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498869|gb|AES80072.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 865

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 214/556 (38%), Positives = 332/556 (59%), Gaps = 22/556 (3%)

Query: 3   VKTTVNWNSVLAGFAKQRGKLKDAQELFDKI------PQPDVVSYNIMLSCILLN---SD 53
           V+  V+W S+ + + K  G  +   ++F ++      P P  VS +I+ +C  L    S 
Sbjct: 227 VRDVVSWTSLSSCYVKC-GFPRKGMDVFREMGWSGVKPNPMTVS-SILPACAELKDLKSG 284

Query: 54  DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE 113
             +  F     + + +    + ++S + +  ++ +AR +F  MP ++ VSW+ +++ Y +
Sbjct: 285 KEIHGFAVRHGMVV-NLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYFK 343

Query: 114 CGQLDKAVELFKVAPVKSVVA----WTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIR 169
             + +K   LF       V A    W A+I G M     EN  +E+ +++ R M  +G +
Sbjct: 344 NKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCM-----ENGRSEEAVEMFRKMQKMGFK 398

Query: 170 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 229
           PN  ++SS+L  CS   +L++GK++H  VF+     D T+ T L+ MY KCGDL  +  +
Sbjct: 399 PNEITISSILPACSFSENLRMGKEIHCYVFRHWKVGDLTSTTALLYMYAKCGDLNLSRNV 458

Query: 230 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLV 289
           F  ++RKDVV WN MI   A HG G++AL LFDKM    ++P+S+TF  +L  C+H+ LV
Sbjct: 459 FDMMRRKDVVAWNTMIIANAMHGNGKEALFLFDKMLLSRVQPNSVTFTGVLSGCSHSRLV 518

Query: 290 DLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLS 349
           + G+Q F+SM  D+ +    +HY+C+VD+  RAG+L EA   I+ MP +P  + +G LL+
Sbjct: 519 EEGVQIFNSMGRDHLVEPDANHYSCVVDIYSRAGRLNEAYKFIQGMPMEPTASAWGALLA 578

Query: 350 ACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVK 409
           ACRV+K ++LA+ +A  LF + P N  G YV L NI    K W + +++R+ MKE  + K
Sbjct: 579 ACRVYKNVELAKISAKKLFEIEP-NNPGNYVSLFNILVTAKMWSEASQVRILMKERGITK 637

Query: 410 MPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEV 469
            PG SW++VG  VH F  GD+ + E   I+  L EL ++MK+AGY PD ++ L  + +E 
Sbjct: 638 TPGCSWLQVGNKVHTFVVGDKSNIESDKIYNFLDELVEKMKMAGYKPDTDYVLQDIDQEE 697

Query: 470 KEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTT 529
           K + L  HSEKLA+AFG++ +   + IRVFKNLR+CGDCH A KY+S +    I+VRD+ 
Sbjct: 698 KAESLCNHSEKLAVAFGILNLNGQSTIRVFKNLRICGDCHNAIKYMSKVVGVIIVVRDSL 757

Query: 530 RFHHFKDGTCSCGDYW 545
           RFHHFK+G CSC D W
Sbjct: 758 RFHHFKNGNCSCKDLW 773



 Score =  124 bits (312), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 90/357 (25%), Positives = 167/357 (46%), Gaps = 63/357 (17%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLN--SDDVVAAFDFFQR------LPIKDTAS 72
           G    A++LFD IPQPD  + + ++S +  +  S++ +  +   Q       +P+   A+
Sbjct: 112 GDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKPDMPVFLAAA 171

Query: 73  WNTMISG---FVQKKNMAKAR-----DLFLAMPEKNSVSWSAMISGYIECGQLDKAVELF 124
               +SG    V++ +    R     D+F+          +A+I  Y +C  ++ A  +F
Sbjct: 172 KACAVSGDALRVKEVHDDATRCGVMSDVFVG---------NALIHAYGKCKCVEGARRVF 222

Query: 125 KVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSH 184
               V+ VV+WT++ S Y+K G+        G+ + R M   G++PN  ++SS+L  C+ 
Sbjct: 223 DDLVVRDVVSWTSLSSCYVKCGF-----PRKGMDVFREMGWSGVKPNPMTVSSILPACAE 277

Query: 185 LSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAM 244
           L  L+ GK++H    +  +  +    + L+S+Y KC  + +A  +F  +  +DVV+WN +
Sbjct: 278 LKDLKSGKEIHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGV 337

Query: 245 ISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYG 304
           ++ Y ++ + EK   LF KM  +G++ D  T+ A++  C               M N   
Sbjct: 338 LTAYFKNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGC---------------MEN--- 379

Query: 305 IAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAE 361
                          GR+ + VE    ++KM FKP      ++L AC   + L + +
Sbjct: 380 ---------------GRSEEAVEMFRKMQKMGFKPNEITISSILPACSFSENLRMGK 421



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 40/75 (53%)

Query: 213 LISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPD 272
           LI +    GD   A +LF  I + D  T + +IS    HG   +A++++  +++ G+KPD
Sbjct: 104 LIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKPD 163

Query: 273 SITFVALLLACNHAG 287
              F+A   AC  +G
Sbjct: 164 MPVFLAAAKACAVSG 178


>gi|296090147|emb|CBI39966.3| unnamed protein product [Vitis vinifera]
          Length = 726

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 211/558 (37%), Positives = 334/558 (59%), Gaps = 20/558 (3%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELF--------DKIPQ--PDVVSYNIMLSCILL 50
           M ++  V+WNS+++G+    G   +A E++        + + Q  PD+++   +L     
Sbjct: 176 MPLRDVVSWNSLISGY-NANGYWNEALEIYYQSIKLFMEMVNQFKPDLLTITSILQACGH 234

Query: 51  NSDDVVAAF--DFFQRLPIK-DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAM 107
             D     +  D+      + DT + N +I+ + +  N+  ++++F  M  K+SVSW++M
Sbjct: 235 LGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSM 294

Query: 108 ISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLG 167
           I+ YI+ G++  ++++F+    + ++ W  +I+       V +     GL+++  M   G
Sbjct: 295 INVYIQNGKMGDSLKVFENMKARDIITWNTIIA-----SCVHSEDCNLGLRMISRMRTEG 349

Query: 168 IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC 227
           + P+ +++ S+L  CS L++ + GK++H  +FK  L  D      LI MY KCG L ++ 
Sbjct: 350 VTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSF 409

Query: 228 KLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG 287
           ++F  ++ KDVVTW A+IS    +G+G+KA+R F +M+  G+ PD + FVA++ AC+H+G
Sbjct: 410 QVFKLMKTKDVVTWTALISACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSG 469

Query: 288 LVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTL 347
           LV+ G+ YF  M  DY I  + +HY C+VDLL R+  L +A D I  MP KP  +I+G L
Sbjct: 470 LVEEGLNYFHRMKKDYKIEPRIEHYACVVDLLSRSALLDKAEDFILSMPLKPDSSIWGAL 529

Query: 348 LSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNV 407
           LSACR+    ++AE  +  +  LNP +  G YV ++NIYAA+ KWD V  IR S+K   +
Sbjct: 530 LSACRMSGDTEIAERVSERIIELNP-DDTGYYVLVSNIYAALGKWDQVRSIRKSIKARGL 588

Query: 408 VKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGE 467
            K PG SW+E+   V+ F +G +   +   +++ L  L   M   GY+ +L+F LH + E
Sbjct: 589 KKDPGCSWMEIQNKVYVFGTGTKFFEQFEEVNKLLGMLAGLMAKEGYIANLQFVLHDIDE 648

Query: 468 EVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRD 527
           + K  +L  HSE+LAIAFGL+    GTP++V KNLRVC DCH  TKYIS I +RE++VRD
Sbjct: 649 DEKRDILCGHSERLAIAFGLLNTKPGTPLQVMKNLRVCEDCHTVTKYISKIVQRELLVRD 708

Query: 528 TTRFHHFKDGTCSCGDYW 545
             RFH FKDG CSCGDYW
Sbjct: 709 ANRFHVFKDGACSCGDYW 726



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 92/316 (29%), Positives = 151/316 (47%), Gaps = 53/316 (16%)

Query: 9   WNSVLAGFAKQRGKLKDAQELFDKIP----QPDVVSY-NIMLSCILLNSDDVVAAFDFFQ 63
           WNS++       G   +A  L+ +      QPD  ++ +++ +C  L         DF  
Sbjct: 83  WNSIIRALT-HNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGL--------LDFEM 133

Query: 64  RLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVEL 123
              I D            +  +M    DL++          +A+I  Y     LDKA ++
Sbjct: 134 AKSIHD------------RVLDMGFGSDLYIG---------NALIDMYCRFNDLDKARKV 172

Query: 124 FKVAPVKSVVAWTAMISGYMKFGYVENSWAE------DGLKLLRMMIGLGIRPNASSLSS 177
           F+  P++ VV+W ++ISGY   GY    W E        +KL   M+    +P+  +++S
Sbjct: 173 FEEMPLRDVVSWNSLISGYNANGY----WNEALEIYYQSIKLFMEMVN-QFKPDLLTITS 227

Query: 178 VLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKD 237
           +L  C HL  L+ GK VH  +  S    DTTA   LI+MY KCG+L  + ++F  ++ KD
Sbjct: 228 ILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKD 287

Query: 238 VVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFD 297
            V+WN+MI+ Y Q+GK   +L++F+ MK      D IT+  ++ +C H+   +LG++   
Sbjct: 288 SVSWNSMINVYIQNGKMGDSLKVFENMKAR----DIITWNTIIASCVHSEDCNLGLRMIS 343

Query: 298 SMVNDYGIAAKPDHYT 313
            M  +      PD  T
Sbjct: 344 RMRTE---GVTPDMAT 356



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 69/263 (26%), Positives = 123/263 (46%), Gaps = 16/263 (6%)

Query: 85  NMAKARDLFLAMPEKNSVSWSA-MISGYIECGQLDKAVELFKVA-PVKSVVAWTAMISGY 142
            + K   L + +   +SV +SA +I+ Y        +  +F++A P  +V  W ++I   
Sbjct: 31  QLHKLHSLIITLGLHHSVIFSAKLIAKYAHFRDPTSSFSVFRLASPSNNVYLWNSIIRAL 90

Query: 143 MKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSP 202
                  N    + L L      + ++P+  +  SV+  C+ L   ++ K +H  V    
Sbjct: 91  -----THNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKSIHDRVLDMG 145

Query: 203 LCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKAL---- 258
              D      LI MYC+  DL+ A K+F E+  +DVV+WN++ISGY  +G   +AL    
Sbjct: 146 FGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYY 205

Query: 259 ---RLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCM 315
              +LF +M ++  KPD +T  ++L AC H G ++ G    D M+   G          +
Sbjct: 206 QSIKLFMEMVNQ-FKPDLLTITSILQACGHLGDLEFGKYVHDYMITS-GYECDTTASNIL 263

Query: 316 VDLLGRAGKLVEAVDLIKKMPFK 338
           +++  + G L+ + ++   M  K
Sbjct: 264 INMYAKCGNLLASQEVFSGMKCK 286


>gi|225431281|ref|XP_002268784.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Vitis vinifera]
          Length = 647

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 193/475 (40%), Positives = 296/475 (62%), Gaps = 9/475 (1%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVV 133
           NT+I  +V+   +     +F  M +++ +SW+++I  Y + G ++ A ELF   P+K +V
Sbjct: 179 NTLIDMYVKCGCLGCGHRVFDEMLDRDVISWTSLIVAYAKVGNMEAASELFDGLPMKDMV 238

Query: 134 AWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ 193
           AWTAM++GY      +N+   + L++   M   G++ +  +L  V+  C+ L + +    
Sbjct: 239 AWTAMVTGY-----AQNARPREALEVFERMQAAGVKTDEVTLVGVISACAQLGAAKYANW 293

Query: 194 VHQLVFKSPLCKDTTAL--TPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQH 251
           V  +  +S     +  +  + LI MY KCG +EDA K+F  ++ ++V ++++MI G+A H
Sbjct: 294 VRDVAEQSGFGPTSNVVVGSALIDMYAKCGSVEDAYKVFERMEERNVYSYSSMIVGFAMH 353

Query: 252 GKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDH 311
           G    A+ LFD+M    +KP+ +TF+ +L AC+HAG+V+ G Q F  M   +G+A   DH
Sbjct: 354 GLAGAAMELFDEMLKTEIKPNRVTFIGVLTACSHAGMVEQGQQLFAMMEECHGVAPSEDH 413

Query: 312 YTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLN 371
           Y CMVDLLGRAG+L EA++L+K MP  P   ++G LL ACR+H   D+A+ AA +LF L 
Sbjct: 414 YACMVDLLGRAGRLEEALNLVKMMPMNPHGGVWGALLGACRIHGNPDMAQIAASHLFELE 473

Query: 372 PANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIE-VGTVVHEFRSGDR 430
           P N  G Y+ L+NIYA+  +WDDV+++R  M+   + K PG SW+E    ++HEF +GD 
Sbjct: 474 P-NGIGNYILLSNIYASAGRWDDVSKVRKLMRAKGLKKNPGCSWVEGKKGIIHEFFAGDM 532

Query: 431 VHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKV 490
            HP+   I + L++L  R+K  GY P+L    + + +E K++LL+ HSEKLA+AFGL+  
Sbjct: 533 SHPKSREIKQALEDLLDRLKYLGYQPNLSSVAYDISDEEKKRLLMSHSEKLALAFGLLTT 592

Query: 491 PLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
             G  IR+ KNLR+C DCH      S I  REI+VRD  RFHHF+DG CSCG++W
Sbjct: 593 NAGCTIRIVKNLRICEDCHSVMCGASQITGREIVVRDNMRFHHFRDGRCSCGNFW 647



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/239 (27%), Positives = 110/239 (46%), Gaps = 48/239 (20%)

Query: 135 WTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQV 194
           WTA+I GY     ++  + E  L L   M   GI P + + +++L  CS    + LG+QV
Sbjct: 107 WTALIRGYA----LQGPFMESVL-LYNSMRRQGIGPVSFTFTALLKACSAALDVNLGRQV 161

Query: 195 H--------------------------------QLVFKSPLCKDTTALTPLISMYCKCGD 222
           H                                  VF   L +D  + T LI  Y K G+
Sbjct: 162 HTQTILIGGFGSDLYVGNTLIDMYVKCGCLGCGHRVFDEMLDRDVISWTSLIVAYAKVGN 221

Query: 223 LEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA 282
           +E A +LF  +  KD+V W AM++GYAQ+ +  +AL +F++M+  G+K D +T V ++ A
Sbjct: 222 MEAASELFDGLPMKDMVAWTAMVTGYAQNARPREALEVFERMQAAGVKTDEVTLVGVISA 281

Query: 283 CNHAGLVDLGIQYFDSMVND------YGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335
           C       LG   + + V D      +G  +     + ++D+  + G + +A  + ++M
Sbjct: 282 C-----AQLGAAKYANWVRDVAEQSGFGPTSNVVVGSALIDMYAKCGSVEDAYKVFERM 335



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 60/280 (21%), Positives = 114/280 (40%), Gaps = 49/280 (17%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G L     +FD++   DV+S+  ++        ++ AA + F  LP+KD  +W  M++G+
Sbjct: 189 GCLGCGHRVFDEMLDRDVISWTSLI-VAYAKVGNMEAASELFDGLPMKDMVAWTAMVTGY 247

Query: 81  VQKKNMAKARDLFLAM-----------------------------------------PEK 99
            Q     +A ++F  M                                         P  
Sbjct: 248 AQNARPREALEVFERMQAAGVKTDEVTLVGVISACAQLGAAKYANWVRDVAEQSGFGPTS 307

Query: 100 NSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKL 159
           N V  SA+I  Y +CG ++ A ++F+    ++V ++++MI G+   G      A   ++L
Sbjct: 308 NVVVGSALIDMYAKCGSVEDAYKVFERMEERNVYSYSSMIVGFAMHGL-----AGAAMEL 362

Query: 160 LRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKS-PLCKDTTALTPLISMYC 218
              M+   I+PN  +   VL  CSH   ++ G+Q+  ++ +   +         ++ +  
Sbjct: 363 FDEMLKTEIKPNRVTFIGVLTACSHAGMVEQGQQLFAMMEECHGVAPSEDHYACMVDLLG 422

Query: 219 KCGDLEDACKLF-LEIQRKDVVTWNAMISGYAQHGKGEKA 257
           + G LE+A  L  +         W A++     HG  + A
Sbjct: 423 RAGRLEEALNLVKMMPMNPHGGVWGALLGACRIHGNPDMA 462



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 77/155 (49%), Gaps = 5/155 (3%)

Query: 173 SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK--LF 230
           S L SVL GC+H++ +   KQVH  +F+  L +    L  L+    K     D     +F
Sbjct: 40  SRLVSVLHGCTHINQV---KQVHAHIFRKGLEQCCFVLAKLLRTLTKLDVPMDPYPRLVF 96

Query: 231 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVD 290
            +++  +   W A+I GYA  G   +++ L++ M+ +G+ P S TF ALL AC+ A  V+
Sbjct: 97  QQVEYPNPFLWTALIRGYALQGPFMESVLLYNSMRRQGIGPVSFTFTALLKACSAALDVN 156

Query: 291 LGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKL 325
           LG Q     +   G  +       ++D+  + G L
Sbjct: 157 LGRQVHTQTILIGGFGSDLYVGNTLIDMYVKCGCL 191


>gi|334187432|ref|NP_196098.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635619|sp|Q9LZ19.2|PP364_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g04780
 gi|332003400|gb|AED90783.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 635

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 215/570 (37%), Positives = 327/570 (57%), Gaps = 50/570 (8%)

Query: 19  QRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDD----VVAAFDFFQRLPIKDTASWN 74
           + G + +A+    KI + D+   ++ L  +L+N+      V  A   F  +  +   SWN
Sbjct: 73  RNGAVMEAKACHGKIIRIDLEG-DVTLLNVLINAYSKCGFVELARQVFDGMLERSLVSWN 131

Query: 75  TMISGFVQKKNMAKARDLFLAMPEK----------------------------------- 99
           TMI  + + +  ++A D+FL M  +                                   
Sbjct: 132 TMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSACGVNCDALECKKLHCLSVKT 191

Query: 100 ----NSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAED 155
               N    +A++  Y +CG +  AV++F+    KS V W++M++GY     V+N   E+
Sbjct: 192 CIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQDKSSVTWSSMVAGY-----VQNKNYEE 246

Query: 156 GLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLIS 215
            L L R    + +  N  +LSSV+  CS+L++L  GKQ+H ++ KS    +    +  + 
Sbjct: 247 ALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAVICKSGFGSNVFVASSAVD 306

Query: 216 MYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSIT 275
           MY KCG L ++  +F E+Q K++  WN +ISG+A+H + ++ + LF+KM+ +GM P+ +T
Sbjct: 307 MYAKCGSLRESYIIFSEVQEKNLELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNEVT 366

Query: 276 FVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335
           F +LL  C H GLV+ G ++F  M   YG++    HY+CMVD+LGRAG L EA +LIK +
Sbjct: 367 FSSLLSVCGHTGLVEEGRRFFKLMRTTYGLSPNVVHYSCMVDILGRAGLLSEAYELIKSI 426

Query: 336 PFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDV 395
           PF P  +I+G+LL++CRV+K L+LAE AA  LF L P N AG +V L+NIYAA K+W+++
Sbjct: 427 PFDPTASIWGSLLASCRVYKNLELAEVAAEKLFELEPEN-AGNHVLLSNIYAANKQWEEI 485

Query: 396 ARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYV 455
           A+ R  +++ +V K+ G SWI++   VH F  G+  HP +  I   L  L  + +  GY 
Sbjct: 486 AKSRKLLRDCDVKKVRGKSWIDIKDKVHTFSVGESGHPRIREICSTLDNLVIKFRKFGYK 545

Query: 456 PDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYI 515
           P +E  LH V    KE+LL+ HSEKLA+ FGL+ +P  +P+R+ KNLR+C DCH   K  
Sbjct: 546 PSVEHELHDVEIGKKEELLMQHSEKLALVFGLMCLPESSPVRIMKNLRICVDCHEFMKAA 605

Query: 516 SAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           S   +R IIVRD  RFHHF DG CSCGD+W
Sbjct: 606 SMATRRFIIVRDVNRFHHFSDGHCSCGDFW 635



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 60/113 (53%)

Query: 171 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 230
           N + +  +L  C+   ++   K  H  + +  L  D T L  LI+ Y KCG +E A ++F
Sbjct: 60  NRNLVHEILQLCARNGAVMEAKACHGKIIRIDLEGDVTLLNVLINAYSKCGFVELARQVF 119

Query: 231 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC 283
             +  + +V+WN MI  Y ++    +AL +F +M++EG K    T  ++L AC
Sbjct: 120 DGMLERSLVSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSAC 172


>gi|356561853|ref|XP_003549191.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Glycine max]
          Length = 748

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 227/591 (38%), Positives = 331/591 (56%), Gaps = 53/591 (8%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIP----QPDVVSYNIMLSCILLNS--DD 54
           M  +  V W++++AG+++  G +++A+ELF ++     +P++VS+N ML+    N   D+
Sbjct: 165 MPDRDVVVWSAMIAGYSR-LGLVEEAKELFGEMRSGGVEPNLVSWNGMLAGFGNNGFYDE 223

Query: 55  VVAAFDFF---QRLPIKDTASW-------------NTMISGFVQKKNMAKARDLFLAM-- 96
            V  F         P   T S                 + G+V K+ +   + +  AM  
Sbjct: 224 AVGMFRMMLVQGFWPDGSTVSCVLPAVGCLEDVVVGAQVHGYVIKQGLGSDKFVVSAMLD 283

Query: 97  ------------------PEKNSVSWSAMISGYIECGQLDKAVELF-KVAPVK---SVVA 134
                              E    S +A ++G    G +D A+E+F K    K   +VV 
Sbjct: 284 MYGKCGCVKEMSRVFDEVEEMEIGSLNAFLTGLSRNGMVDTALEVFNKFKDQKMELNVVT 343

Query: 135 WTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQV 194
           WT++I+        +N    + L+L R M   G+ PNA ++ S++  C ++S+L  GK++
Sbjct: 344 WTSIIASC-----SQNGKDLEALELFRDMQAYGVEPNAVTIPSLIPACGNISALMHGKEI 398

Query: 195 HQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKG 254
           H    +  +  D    + LI MY KCG ++ A + F ++   ++V+WNA++ GYA HGK 
Sbjct: 399 HCFSLRRGIFDDVYVGSALIDMYAKCGRIQLARRCFDKMSALNLVSWNAVMKGYAMHGKA 458

Query: 255 EKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTC 314
           ++ + +F  M   G KPD +TF  +L AC   GL + G + ++SM  ++GI  K +HY C
Sbjct: 459 KETMEMFHMMLQSGQKPDLVTFTCVLSACAQNGLTEEGWRCYNSMSEEHGIEPKMEHYAC 518

Query: 315 MVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPAN 374
           +V LL R GKL EA  +IK+MPF+P   ++G LLS+CRVH  L L E AA  LF L P N
Sbjct: 519 LVTLLSRVGKLEEAYSIIKEMPFEPDACVWGALLSSCRVHNNLSLGEIAAEKLFFLEPTN 578

Query: 375 AAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPE 434
             G Y+ L+NIYA+   WD+  RIR  MK   + K PGYSWIEVG  VH   +GD+ HP+
Sbjct: 579 P-GNYILLSNIYASKGLWDEENRIREVMKSKGLRKNPGYSWIEVGHKVHMLLAGDQSHPQ 637

Query: 435 LVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGT 494
           +  I EKL +L  +MK +GY+P   F L  V E+ KEQ+L  HSEKLA+  GL+    G 
Sbjct: 638 MKDILEKLDKLNMQMKKSGYLPKTNFVLQDVEEQDKEQILCGHSEKLAVVLGLLNTSPGQ 697

Query: 495 PIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           P++V KNLR+C DCH   K IS +E REI VRDT RFHHFKDG CSCGD+W
Sbjct: 698 PLQVIKNLRICDDCHAVIKVISRLEGREIYVRDTNRFHHFKDGVCSCGDFW 748



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 72/245 (29%), Positives = 139/245 (56%), Gaps = 14/245 (5%)

Query: 67  IKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELF-- 124
           + D+   +++   +++   +  AR LF  MP+++ V WSAMI+GY   G +++A ELF  
Sbjct: 136 LTDSIVASSLTHMYLKCDRILDARKLFDRMPDRDVVVWSAMIAGYSRLGLVEEAKELFGE 195

Query: 125 ----KVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLL 180
                V P  ++V+W  M++G   FG   N + ++ + + RMM+  G  P+ S++S VL 
Sbjct: 196 MRSGGVEP--NLVSWNGMLAG---FG--NNGFYDEAVGMFRMMLVQGFWPDGSTVSCVLP 248

Query: 181 GCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVT 240
               L  + +G QVH  V K  L  D   ++ ++ MY KCG +++  ++F E++  ++ +
Sbjct: 249 AVGCLEDVVVGAQVHGYVIKQGLGSDKFVVSAMLDMYGKCGCVKEMSRVFDEVEEMEIGS 308

Query: 241 WNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV 300
            NA ++G +++G  + AL +F+K KD+ M+ + +T+ +++ +C+  G     ++ F  M 
Sbjct: 309 LNAFLTGLSRNGMVDTALEVFNKFKDQKMELNVVTWTSIIASCSQNGKDLEALELFRDM- 367

Query: 301 NDYGI 305
             YG+
Sbjct: 368 QAYGV 372



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/176 (28%), Positives = 94/176 (53%), Gaps = 11/176 (6%)

Query: 128 PVKSVVAWTAMISGYMK---FGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSH 184
           P  ++ +++++I  + +   F +V  +++   L  LR++      P+A  L S +  C+ 
Sbjct: 65  PHPTLFSFSSLIHAFARSHHFPHVLTTFSH--LHPLRLI------PDAFLLPSAIKSCAS 116

Query: 185 LSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAM 244
           L +L  G+Q+H     S    D+   + L  MY KC  + DA KLF  +  +DVV W+AM
Sbjct: 117 LRALDPGQQLHAFAAASGFLTDSIVASSLTHMYLKCDRILDARKLFDRMPDRDVVVWSAM 176

Query: 245 ISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV 300
           I+GY++ G  E+A  LF +M+  G++P+ +++  +L    + G  D  +  F  M+
Sbjct: 177 IAGYSRLGLVEEAKELFGEMRSGGVEPNLVSWNGMLAGFGNNGFYDEAVGMFRMML 232


>gi|15242550|ref|NP_196557.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170796|sp|Q9FIB2.1|PP373_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g09950
 gi|9758973|dbj|BAB09416.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332004087|gb|AED91470.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 995

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 220/569 (38%), Positives = 336/569 (59%), Gaps = 41/569 (7%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSD---DVVA 57
           + +   V+ ++ L     + G L + +++F  +P+ D VS+N ++  +  +     + V 
Sbjct: 444 LGIDLNVSVSNALMTLYAETGYLNECRKIFSSMPEHDQVSWNSIIGALARSERSLPEAVV 503

Query: 58  AFDFFQRLPIK----------------DTASWNTMISGFVQKKNMAKARDLFLAMPEKNS 101
            F   QR   K                        I G   K N+A             +
Sbjct: 504 CFLNAQRAGQKLNRITFSSVLSAVSSLSFGELGKQIHGLALKNNIAD-----------EA 552

Query: 102 VSWSAMISGYIECGQLDKAVELF-KVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLL 160
            + +A+I+ Y +CG++D   ++F ++A  +  V W +MISGY     + N      L L+
Sbjct: 553 TTENALIACYGKCGEMDGCEKIFSRMAERRDNVTWNSMISGY-----IHNELLAKALDLV 607

Query: 161 RMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKC 220
             M+  G R ++   ++VL   + +++L+ G +VH    ++ L  D    + L+ MY KC
Sbjct: 608 WFMLQTGQRLDSFMYATVLSAFASVATLERGMEVHACSVRACLESDVVVGSALVDMYSKC 667

Query: 221 GDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKP-DSITFVAL 279
           G L+ A + F  +  ++  +WN+MISGYA+HG+GE+AL+LF+ MK +G  P D +TFV +
Sbjct: 668 GRLDYALRFFNTMPVRNSYSWNSMISGYARHGQGEEALKLFETMKLDGQTPPDHVTFVGV 727

Query: 280 LLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKP 339
           L AC+HAGL++ G ++F+SM + YG+A + +H++CM D+LGRAG+L +  D I+KMP KP
Sbjct: 728 LSACSHAGLLEEGFKHFESMSDSYGLAPRIEHFSCMADVLGRAGELDKLEDFIEKMPMKP 787

Query: 340 QPAIFGTLLSAC-RVHKR-LDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVAR 397
              I+ T+L AC R + R  +L + AA  LF L P NA   YV L N+YAA  +W+D+ +
Sbjct: 788 NVLIWRTVLGACCRANGRKAELGKKAAEMLFQLEPENAVN-YVLLGNMYAAGGRWEDLVK 846

Query: 398 IRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPD 457
            R  MK+ +V K  GYSW+ +   VH F +GD+ HP+   I++KLKEL ++M+ AGYVP 
Sbjct: 847 ARKKMKDADVKKEAGYSWVTMKDGVHMFVAGDKSHPDADVIYKKLKELNRKMRDAGYVPQ 906

Query: 458 LEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGT-PIRVFKNLRVCGDCHRATKYIS 516
             FAL+ + +E KE++L +HSEKLA+AF L      T PIR+ KNLRVCGDCH A KYIS
Sbjct: 907 TGFALYDLEQENKEEILSYHSEKLAVAFVLAAQRSSTLPIRIMKNLRVCGDCHSAFKYIS 966

Query: 517 AIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
            IE R+II+RD+ RFHHF+DG CSC D+W
Sbjct: 967 KIEGRQIILRDSNRFHHFQDGACSCSDFW 995



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 63/182 (34%), Positives = 100/182 (54%), Gaps = 9/182 (4%)

Query: 107 MISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGL 166
           +I+ Y+E G    A ++F   P+++ V+W  ++SGY +     N   ++ L  LR M+  
Sbjct: 42  LINAYLETGDSVSARKVFDEMPLRNCVSWACIVSGYSR-----NGEHKEALVFLRDMVKE 96

Query: 167 GIRPNASSLSSVLLGCSHLSSLQL--GKQVHQLVFKSPLCKDTTALTPLISMYCKC-GDL 223
           GI  N  +  SVL  C  + S+ +  G+Q+H L+FK     D      LISMY KC G +
Sbjct: 97  GIFSNQYAFVSVLRACQEIGSVGILFGRQIHGLMFKLSYAVDAVVSNVLISMYWKCIGSV 156

Query: 224 EDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL-LA 282
             A   F +I+ K+ V+WN++IS Y+Q G    A R+F  M+ +G +P   TF +L+  A
Sbjct: 157 GYALCAFGDIEVKNSVSWNSIISVYSQAGDQRSAFRIFSSMQYDGSRPTEYTFGSLVTTA 216

Query: 283 CN 284
           C+
Sbjct: 217 CS 218



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 90/328 (27%), Positives = 155/328 (47%), Gaps = 17/328 (5%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWN-TMISG 79
           G + DA+ +F  +   D VS+N M++ +  N    + A + ++ +   D    + T+IS 
Sbjct: 363 GSIADARRVFYFMTDKDSVSWNSMITGLDQNG-CFIEAVERYKSMRRHDILPGSFTLISS 421

Query: 80  FVQKKNMAKAR--------DLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKS 131
                ++  A+         L L +    SVS +A+++ Y E G L++  ++F   P   
Sbjct: 422 LSSCASLKWAKLGQQIHGESLKLGIDLNVSVS-NALMTLYAETGYLNECRKIFSSMPEHD 480

Query: 132 VVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLG 191
            V+W ++I    +    E S  E  +  L      G + N  + SSVL   S LS  +LG
Sbjct: 481 QVSWNSIIGALAR---SERSLPEAVVCFLNAQRA-GQKLNRITFSSVLSAVSSLSFGELG 536

Query: 192 KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI-QRKDVVTWNAMISGYAQ 250
           KQ+H L  K+ +  + T    LI+ Y KCG+++   K+F  + +R+D VTWN+MISGY  
Sbjct: 537 KQIHGLALKNNIADEATTENALIACYGKCGEMDGCEKIFSRMAERRDNVTWNSMISGYIH 596

Query: 251 HGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPD 310
           +    KAL L   M   G + DS  +  +L A      ++ G++     V    + +   
Sbjct: 597 NELLAKALDLVWFMLQTGQRLDSFMYATVLSAFASVATLERGMEVHACSVRAC-LESDVV 655

Query: 311 HYTCMVDLLGRAGKLVEAVDLIKKMPFK 338
             + +VD+  + G+L  A+     MP +
Sbjct: 656 VGSALVDMYSKCGRLDYALRFFNTMPVR 683



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 84/365 (23%), Positives = 140/365 (38%), Gaps = 55/365 (15%)

Query: 37  DVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM 96
           D V  N+++S        V  A   F  + +K++ SWN++IS + Q  +   A  +F +M
Sbjct: 138 DAVVSNVLISMYWKCIGSVGYALCAFGDIEVKNSVSWNSIISVYSQAGDQRSAFRIFSSM 197

Query: 97  PEKNS-----------------------------------------VSWSAMISGYIECG 115
               S                                            S ++S + + G
Sbjct: 198 QYDGSRPTEYTFGSLVTTACSLTEPDVRLLEQIMCTIQKSGLLTDLFVGSGLVSAFAKSG 257

Query: 116 QLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKL---LRMMIGLGIRPNA 172
            L  A ++F     ++ V    ++      G V   W E+  KL   +  MI +      
Sbjct: 258 SLSYARKVFNQMETRNAVTLNGLM-----VGLVRQKWGEEATKLFMDMNSMIDVSPESYV 312

Query: 173 SSLSSV-LLGCSHLSSLQLGKQVHQLVFKSPLCKDTTAL-TPLISMYCKCGDLEDACKLF 230
             LSS      +    L+ G++VH  V  + L      +   L++MY KCG + DA ++F
Sbjct: 313 ILLSSFPEYSLAEEVGLKKGREVHGHVITTGLVDFMVGIGNGLVNMYAKCGSIADARRVF 372

Query: 231 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVD 290
             +  KD V+WN+MI+G  Q+G   +A+  +  M+   + P S T ++ L +C       
Sbjct: 373 YFMTDKDSVSWNSMITGLDQNGCFIEAVERYKSMRRHDILPGSFTLISSLSSCASLKWAK 432

Query: 291 LGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQ---PAIFGTL 347
           LG Q     +   GI         ++ L    G L E   +   MP   Q    +I G L
Sbjct: 433 LGQQIHGESLK-LGIDLNVSVSNALMTLYAETGYLNECRKIFSSMPEHDQVSWNSIIGAL 491

Query: 348 LSACR 352
             + R
Sbjct: 492 ARSER 496



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 64/285 (22%), Positives = 125/285 (43%), Gaps = 39/285 (13%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVV 133
           N +++ + +  ++A AR +F  M +K+SVSW++MI+G  + G   +AVE +K        
Sbjct: 353 NGLVNMYAKCGSIADARRVFYFMTDKDSVSWNSMITGLDQNGCFIEAVERYKS------- 405

Query: 134 AWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ 193
                                        M    I P + +L S L  C+ L   +LG+Q
Sbjct: 406 -----------------------------MRRHDILPGSFTLISSLSSCASLKWAKLGQQ 436

Query: 194 VHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGK 253
           +H    K  +  + +    L+++Y + G L +  K+F  +   D V+WN++I   A+  +
Sbjct: 437 IHGESLKLGIDLNVSVSNALMTLYAETGYLNECRKIFSSMPEHDQVSWNSIIGALARSER 496

Query: 254 G-EKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY 312
              +A+  F   +  G K + ITF ++L A +     +LG Q     + +  IA +    
Sbjct: 497 SLPEAVVCFLNAQRAGQKLNRITFSSVLSAVSSLSFGELGKQIHGLALKN-NIADEATTE 555

Query: 313 TCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRL 357
             ++   G+ G++     +  +M  +     + +++S   +H  L
Sbjct: 556 NALIACYGKCGEMDGCEKIFSRMAERRDNVTWNSMISG-YIHNEL 599



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 108/477 (22%), Positives = 188/477 (39%), Gaps = 111/477 (23%)

Query: 50  LNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKA----RDL------------- 92
           L + D V+A   F  +P+++  SW  ++SG+ +     +A    RD+             
Sbjct: 47  LETGDSVSARKVFDEMPLRNCVSWACIVSGYSRNGEHKEALVFLRDMVKEGIFSNQYAFV 106

Query: 93  --FLAMPEKNSVSW----------------------SAMISGYIEC-GQLDKAVELFKVA 127
               A  E  SV                        + +IS Y +C G +  A+  F   
Sbjct: 107 SVLRACQEIGSVGILFGRQIHGLMFKLSYAVDAVVSNVLISMYWKCIGSVGYALCAFGDI 166

Query: 128 PVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSS 187
            VK+ V+W ++IS Y + G   +++     ++   M   G RP   +  S++     L+ 
Sbjct: 167 EVKNSVSWNSIISVYSQAGDQRSAF-----RIFSSMQYDGSRPTEYTFGSLVTTACSLTE 221

Query: 188 --LQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMI 245
             ++L +Q+   + KS L  D    + L+S + K G L  A K+F +++ ++ VT N ++
Sbjct: 222 PDVRLLEQIMCTIQKSGLLTDLFVGSGLVSAFAKSGSLSYARKVFNQMETRNAVTLNGLM 281

Query: 246 SGYAQHGKGEKALRLFDKMKDE-GMKPDSITFVALLLACNH------------------- 285
            G  +   GE+A +LF  M     + P+S  +V LL +                      
Sbjct: 282 VGLVRQKWGEEATKLFMDMNSMIDVSPES--YVILLSSFPEYSLAEEVGLKKGREVHGHV 339

Query: 286 --AGLVDLGIQYFDSMVNDY---GIAAKPDH------------YTCMVDLLGRAGKLVEA 328
              GLVD  +   + +VN Y   G  A                +  M+  L + G  +EA
Sbjct: 340 ITTGLVDFMVGIGNGLVNMYAKCGSIADARRVFYFMTDKDSVSWNSMITGLDQNGCFIEA 399

Query: 329 VDLIKKM---PFKPQPAIFGTLLSACRVHKRLDLAE---FAAMNL---FNLNPANAAGCY 379
           V+  K M      P      + LS+C   K   L +     ++ L    N++ +NA    
Sbjct: 400 VERYKSMRRHDILPGSFTLISSLSSCASLKWAKLGQQIHGESLKLGIDLNVSVSNA---- 455

Query: 380 VQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELV 436
             L  +YA     ++  +I  SM E++ V     SW    +++      +R  PE V
Sbjct: 456 --LMTLYAETGYLNECRKIFSSMPEHDQV-----SW---NSIIGALARSERSLPEAV 502



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 55/97 (56%)

Query: 195 HQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKG 254
           H  ++K+ L KD      LI+ Y + GD   A K+F E+  ++ V+W  ++SGY+++G+ 
Sbjct: 24  HSRLYKNRLDKDVYLCNNLINAYLETGDSVSARKVFDEMPLRNCVSWACIVSGYSRNGEH 83

Query: 255 EKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDL 291
           ++AL     M  EG+  +   FV++L AC   G V +
Sbjct: 84  KEALVFLRDMVKEGIFSNQYAFVSVLRACQEIGSVGI 120


>gi|357116318|ref|XP_003559929.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Brachypodium distachyon]
          Length = 646

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 217/557 (38%), Positives = 310/557 (55%), Gaps = 50/557 (8%)

Query: 28  ELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMA 87
            L+ K+P P   S  +  S ++L S   V     F  +P KD  SWNT++ G  +     
Sbjct: 101 NLYCKLPAPPSHSPEMDGSAVVLESVRKV-----FDEMPEKDVVSWNTLVLGCAESGRHG 155

Query: 88  KARDLFLAM------PEKNSVS---------------------------------WSAMI 108
           +A  L   M      P+  ++S                                  S++I
Sbjct: 156 EALGLVREMWRDGCKPDSFTLSSVLPIFAEGADVRRGMELHGFATRNGFHDDVFVGSSLI 215

Query: 109 SGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGI 168
             Y  C + D +V++F   PV+  + W +M++G  + G V+     + L L R M+  GI
Sbjct: 216 DMYANCTRTDYSVKVFDNLPVRDAILWNSMLAGCAQNGSVD-----EALGLFRRMLHSGI 270

Query: 169 RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK 228
           +P   + SS++  C +L+SL LGKQ+H  V +     +    + LI MYCKCG++  A +
Sbjct: 271 KPMPVTFSSLIPACGNLASLLLGKQLHAYVIRGGFDGNVFISSSLIDMYCKCGNVSIARR 330

Query: 229 LFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGL 288
           +F  IQ  D+V+W AMI G+A HG   +AL LFD+M+   +KP+ ITF+A+L AC+HAGL
Sbjct: 331 IFDRIQSPDIVSWTAMIMGHALHGPAREALVLFDRMELGNLKPNHITFLAVLTACSHAGL 390

Query: 289 VDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLL 348
           VD G +YF+SM + YGI    +H+  + D LGR GKL EA + I  M  KP  +++ TLL
Sbjct: 391 VDKGWKYFNSMSDHYGIVPSLEHHAALADTLGRPGKLEEAYNFISGMKIKPTASVWSTLL 450

Query: 349 SACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVV 408
            AC+VHK   LAE  A  +F+L P  + G ++ L+N Y++  +W++ A +R SM++  + 
Sbjct: 451 RACKVHKNTVLAEEVAKKIFDLEP-RSMGSHIILSNTYSSSGRWNEAAHLRKSMRKKGMQ 509

Query: 409 KMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEE 468
           K P  SWIEV    H F + D+ HP    I + L    ++M   GYVP+ +     + EE
Sbjct: 510 KEPACSWIEVKNKQHVFVAHDKSHPWYERIIDALNVFSEQMVRQGYVPNTDDVFQDIEEE 569

Query: 469 VKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDT 528
            K  +L  HSEKLAI FG+I  P GT IRV KNLRVC DCH  TK+IS I  REI++RD 
Sbjct: 570 QKNSVLCGHSEKLAIVFGIISTPPGTTIRVMKNLRVCVDCHTVTKFISKIVGREIVMRDA 629

Query: 529 TRFHHFKDGTCSCGDYW 545
            RFHHFKDG CSCGD+W
Sbjct: 630 NRFHHFKDGICSCGDFW 646



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 60/226 (26%), Positives = 94/226 (41%), Gaps = 47/226 (20%)

Query: 173 SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGD---------- 222
           +SL   L  C+ L    LG  +H L  +S    D  A   L+++YCK             
Sbjct: 59  TSLPGALKSCAALGLRALGASLHALALRSGAFADRFAANALLNLYCKLPAPPSHSPEMDG 118

Query: 223 ----LEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVA 278
               LE   K+F E+  KDVV+WN ++ G A+ G+  +AL L  +M  +G KPDS T  +
Sbjct: 119 SAVVLESVRKVFDEMPEKDVVSWNTLVLGCAESGRHGEALGLVREMWRDGCKPDSFTLSS 178

Query: 279 LLLACNHAGLVDLGIQYF---------------DSMVNDYGIAAKPDHYTCMVDLL---- 319
           +L        V  G++                  S+++ Y    + D+   + D L    
Sbjct: 179 VLPIFAEGADVRRGMELHGFATRNGFHDDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRD 238

Query: 320 -----------GRAGKLVEAVDLIKKM---PFKPQPAIFGTLLSAC 351
                       + G + EA+ L ++M     KP P  F +L+ AC
Sbjct: 239 AILWNSMLAGCAQNGSVDEALGLFRRMLHSGIKPMPVTFSSLIPAC 284



 Score = 42.7 bits (99), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 50/238 (21%), Positives = 97/238 (40%), Gaps = 40/238 (16%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAF- 59
           + V+  + WNS+LAG A Q G + +A  LF ++    +    +  S ++    ++ +   
Sbjct: 234 LPVRDAILWNSMLAGCA-QNGSVDEALGLFRRMLHSGIKPMPVTFSSLIPACGNLASLLL 292

Query: 60  -DFFQRLPIKDTASWNTMISG-----FVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE 113
                   I+     N  IS      + +  N++ AR +F  +   + VSW+AMI G+  
Sbjct: 293 GKQLHAYVIRGGFDGNVFISSSLIDMYCKCGNVSIARRIFDRIQSPDIVSWTAMIMGHAL 352

Query: 114 CGQLDKAVELFKVAPVKSV----VAWTAMISGYMKFGYVENSWA---------------- 153
            G   +A+ LF    + ++    + + A+++     G V+  W                 
Sbjct: 353 HGPAREALVLFDRMELGNLKPNHITFLAVLTACSHAGLVDKGWKYFNSMSDHYGIVPSLE 412

Query: 154 -----EDGL-------KLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVF 199
                 D L       +    + G+ I+P AS  S++L  C    +  L ++V + +F
Sbjct: 413 HHAALADTLGRPGKLEEAYNFISGMKIKPTASVWSTLLRACKVHKNTVLAEEVAKKIF 470


>gi|225462250|ref|XP_002263297.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera]
 gi|297736133|emb|CBI24171.3| unnamed protein product [Vitis vinifera]
          Length = 687

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 213/579 (36%), Positives = 331/579 (57%), Gaps = 51/579 (8%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
           N+++  + K R   + A+ +F+ +P  DV+S+  M SC  +N   +  A   F+++ +  
Sbjct: 117 NALIDMYGKCRCS-EGARLVFEGMPFRDVISWTSMASC-YVNCGLLREALGAFRKMGLNG 174

Query: 70  TASWNTMIS-------------------GFVQKKNMA--------------------KAR 90
               +  +S                   GFV +  M                     +A+
Sbjct: 175 ERPNSVTVSSILPACTDLKDLKSGREVHGFVVRNGMGGNVFVSSALVNMYASCLSIRQAQ 234

Query: 91  DLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSV----VAWTAMISGYMKFG 146
            +F +M  +++VSW+ +I+ Y    + +K + +F     + V     +W A+I G M   
Sbjct: 235 LVFDSMSRRDTVSWNVLITAYFLNKECEKGLSVFGRMMSEGVGLNYASWNAVIGGCM--- 291

Query: 147 YVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKD 206
             +N   E  L++L  M   G +PN  +++SVL  C++L SL+ GKQ+H  +F+    +D
Sbjct: 292 --QNGRTEKALEVLSRMQNSGFKPNQITITSVLPACTNLESLRGGKQIHGYIFRHWFFQD 349

Query: 207 TTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKD 266
            T  T L+ MY KCGDLE + ++F  + ++D V+WN MI   + HG GE+AL LF +M D
Sbjct: 350 LTTTTALVFMYAKCGDLELSRRVFSMMTKRDTVSWNTMIIATSMHGNGEEALLLFREMVD 409

Query: 267 EGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLV 326
            G++P+S+TF  +L  C+H+ LVD G+  FDSM  D+ +    DH++CMVD+L RAG+L 
Sbjct: 410 SGVRPNSVTFTGVLSGCSHSRLVDEGLLIFDSMSRDHSVEPDADHHSCMVDVLSRAGRLE 469

Query: 327 EAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIY 386
           EA + IKKMP +P    +G LL  CRV+K ++L   AA  LF +   N  G YV L+NI 
Sbjct: 470 EAYEFIKKMPIEPTAGAWGALLGGCRVYKNVELGRIAANRLFEIESDN-PGNYVLLSNIL 528

Query: 387 AAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELE 446
            + K W + +  R  M++  V K PG SWI+V   VH F  GD+ + +   I+  L  + 
Sbjct: 529 VSAKLWSEASETRKLMRDRGVTKNPGCSWIQVRNRVHTFVVGDKSNDQSDEIYRFLDYMG 588

Query: 447 KRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCG 506
           ++M++AGY+P+ +F L  V +E KE++L  HSEKLA+AFG++ +   + IRVFKNLR+CG
Sbjct: 589 EKMRIAGYLPNTDFVLQDVDQEEKEEVLCNHSEKLAVAFGVLNLNGESSIRVFKNLRICG 648

Query: 507 DCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           DCH A K+++ I   +IIVRD+ RFHHF+DG CSC D+W
Sbjct: 649 DCHNAIKFMAKIVGVKIIVRDSLRFHHFRDGLCSCQDFW 687



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 82/303 (27%), Positives = 151/303 (49%), Gaps = 20/303 (6%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G L+ A+ LFDKIPQPD+ ++ I++S  L      + A  ++     K+    + ++   
Sbjct: 25  GDLQRARHLFDKIPQPDLPTWTILISA-LTKHGRSLEAIQYYNDFRHKNCVEPDKLLLLS 83

Query: 81  VQKKNMAKARDLFLAMP-EKNSVSW---------SAMISGYIECGQLDKAVELFKVAPVK 130
           V K   A  RD+  A    ++++ +         +A+I  Y +C   + A  +F+  P +
Sbjct: 84  VAKA-CASLRDVMNAKRVHEDAIRFGFCSDVLLGNALIDMYGKCRCSEGARLVFEGMPFR 142

Query: 131 SVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQL 190
            V++WT+M S Y+  G +      + L   R M   G RPN+ ++SS+L  C+ L  L+ 
Sbjct: 143 DVISWTSMASCYVNCGLLR-----EALGAFRKMGLNGERPNSVTVSSILPACTDLKDLKS 197

Query: 191 GKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQ 250
           G++VH  V ++ +  +    + L++MY  C  +  A  +F  + R+D V+WN +I+ Y  
Sbjct: 198 GREVHGFVVRNGMGGNVFVSSALVNMYASCLSIRQAQLVFDSMSRRDTVSWNVLITAYFL 257

Query: 251 HGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPD 310
           + + EK L +F +M  EG+  +  ++ A++  C   G  +  ++    M N      KP+
Sbjct: 258 NKECEKGLSVFGRMMSEGVGLNYASWNAVIGGCMQNGRTEKALEVLSRMQNS---GFKPN 314

Query: 311 HYT 313
             T
Sbjct: 315 QIT 317



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 85/181 (46%), Gaps = 16/181 (8%)

Query: 203 LCKDTTALTP-----LISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKA 257
           L K  T+L P      I +Y   GDL+ A  LF +I + D+ TW  +IS   +HG+  +A
Sbjct: 2   LSKLPTSLPPHLALKFIKVYSNSGDLQRARHLFDKIPQPDLPTWTILISALTKHGRSLEA 61

Query: 258 LRLFDKMKDEG-MKPDSITFVALLLACNHAGLVD-LGIQYFDSMVNDYGIAAKPDHYTCM 315
           ++ ++  + +  ++PD +  +++  AC  A L D +  +        +G  +       +
Sbjct: 62  IQYYNDFRHKNCVEPDKLLLLSVAKAC--ASLRDVMNAKRVHEDAIRFGFCSDVLLGNAL 119

Query: 316 VDLLGRAGKLVEAVDLI-KKMPFKPQPAIFGTLLSACRVH---KRLDLAEFAAMNLFNLN 371
           +D+ G+  +  E   L+ + MPF+    I  T +++C V+    R  L  F  M L    
Sbjct: 120 IDMYGKC-RCSEGARLVFEGMPFR--DVISWTSMASCYVNCGLLREALGAFRKMGLNGER 176

Query: 372 P 372
           P
Sbjct: 177 P 177


>gi|359483655|ref|XP_003632994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
          Length = 613

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 204/529 (38%), Positives = 313/529 (59%), Gaps = 17/529 (3%)

Query: 26  AQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK----DTASWNTMISGFV 81
           A ++F +I  P++ ++N M+      S++ + A + ++++ +     DT ++  ++    
Sbjct: 93  AHQIFSQIQNPNIFTWNTMIRG-YAESENPMPALELYRQMHVSCIEPDTHTYPFLLKAIA 151

Query: 82  QKKNMAKARDLFLAMPEKNSVS-----WSAMISGYIECGQLDKAVELFKVAPVKSVVAWT 136
           +  ++ +   +  ++  +N         + ++  Y  CG  + A +LF++   +++V W 
Sbjct: 152 KLMDVREGEKVH-SIAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFELMAERNLVTWN 210

Query: 137 AMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQ 196
           ++I+GY       N    + L L R M   G+ P+  ++ S+L  C+ L +L LG++ H 
Sbjct: 211 SVINGY-----ALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALGRRAHV 265

Query: 197 LVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEK 256
            + K  L  +  A   L+ +Y KCG +  A K+F E++ K VV+W ++I G A +G G++
Sbjct: 266 YMVKVGLDGNLHAGNALLDLYAKCGSIRQAHKVFDEMEEKSVVSWTSLIVGLAVNGFGKE 325

Query: 257 ALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMV 316
           AL LF +++ +G+ P  ITFV +L AC+H G+VD G  YF  M  +YGI  K +HY CMV
Sbjct: 326 ALELFKELERKGLMPSEITFVGVLYACSHCGMVDEGFDYFKRMKEEYGIVPKIEHYGCMV 385

Query: 317 DLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAA 376
           DLLGRAG + +A + I+ MP +P   ++ TLL AC +H  L L E A   L  L P ++ 
Sbjct: 386 DLLGRAGLVKQAHEFIQNMPMQPNAVVWRTLLGACTIHGHLALGEVARAQLLQLEPKHS- 444

Query: 377 GCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELV 436
           G YV L+N+YA+ ++W DV ++R +M    V K PG+S +E+   +HEF  GDR HP+  
Sbjct: 445 GDYVLLSNLYASEQRWSDVHKVRRTMLREGVKKTPGHSLVELRNRLHEFVMGDRSHPQTE 504

Query: 437 SIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPI 496
            I+ KL E+ K +KL GYVP +   L  + EE KE  L +HSEK+AIAF LI    G PI
Sbjct: 505 EIYVKLAEITKLLKLEGYVPHISNVLADIEEEEKETALSYHSEKIAIAFMLINTAAGIPI 564

Query: 497 RVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           RV KNLRVC DCH A K IS +  REI+VRD +RFHHFKDG CSC DYW
Sbjct: 565 RVVKNLRVCADCHLAIKLISKVFDREIVVRDRSRFHHFKDGHCSCKDYW 613



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 108/225 (48%), Gaps = 6/225 (2%)

Query: 114 CGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNAS 173
           C  +  A ++F      ++  W  MI      GY E+      L+L R M    I P+  
Sbjct: 87  CSPMSYAHQIFSQIQNPNIFTWNTMIR-----GYAESENPMPALELYRQMHVSCIEPDTH 141

Query: 174 SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI 233
           +   +L   + L  ++ G++VH +  ++           L+ MY  CG  E A KLF  +
Sbjct: 142 TYPFLLKAIAKLMDVREGEKVHSIAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFELM 201

Query: 234 QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGI 293
             +++VTWN++I+GYA +G+  +AL LF +M   G++PD  T V+LL AC   G + LG 
Sbjct: 202 AERNLVTWNSVINGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALGR 261

Query: 294 QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 338
           +    MV   G+         ++DL  + G + +A  +  +M  K
Sbjct: 262 RAHVYMVK-VGLDGNLHAGNALLDLYAKCGSIRQAHKVFDEMEEK 305



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 70/309 (22%), Positives = 118/309 (38%), Gaps = 90/309 (29%)

Query: 177 SVLLGCSHLSSLQLGKQVHQLVFKS--PLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ 234
           ++LL C+  SS    +Q+H    +   PL         + ++   C  +  A ++F +IQ
Sbjct: 44  ALLLSCA--SSKFKFRQIHAFSIRHGVPLTNPDMGKYLIFTLLSFCSPMSYAHQIFSQIQ 101

Query: 235 RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITF------------------ 276
             ++ TWN MI GYA+      AL L+ +M    ++PD+ T+                  
Sbjct: 102 NPNIFTWNTMIRGYAESENPMPALELYRQMHVSCIEPDTHTYPFLLKAIAKLMDVREGEK 161

Query: 277 --------------------VALLLACNHAG--------LVDLGIQYFDSMVNDYGIAAK 308
                               V +  AC HA         + +  +  ++S++N Y +  +
Sbjct: 162 VHSIAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFELMAERNLVTWNSVINGYALNGR 221

Query: 309 PDHYTCMVDLLGRAGKLVEAVDLIKKMPFK---PQPAIFGTLLSACRVHKRLDLAEFAAM 365
           P+                EA+ L ++M  +   P      +LLSAC     L L   A +
Sbjct: 222 PN----------------EALTLFREMGLRGVEPDGFTMVSLLSACAELGALALGRRAHV 265

Query: 366 NLF------NLNPANA-AGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIE- 417
            +       NL+  NA    Y +  +I  A K +D+       M+E +VV     SW   
Sbjct: 266 YMVKVGLDGNLHAGNALLDLYAKCGSIRQAHKVFDE-------MEEKSVV-----SWTSL 313

Query: 418 -VGTVVHEF 425
            VG  V+ F
Sbjct: 314 IVGLAVNGF 322



 Score = 44.7 bits (104), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 66/288 (22%), Positives = 118/288 (40%), Gaps = 30/288 (10%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIP----QPDVVSYNIMLSCILLNSDDVV 56
           M  +  V WNSV+ G+A   G+  +A  LF ++     +PD  +   M+S  LL++   +
Sbjct: 201 MAERNLVTWNSVINGYALN-GRPNEALTLFREMGLRGVEPDGFT---MVS--LLSACAEL 254

Query: 57  AAFDFFQRLPI--------KDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMI 108
            A    +R  +         +  + N ++  + +  ++ +A  +F  M EK+ VSW+++I
Sbjct: 255 GALALGRRAHVYMVKVGLDGNLHAGNALLDLYAKCGSIRQAHKVFDEMEEKSVVSWTSLI 314

Query: 109 SGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLL-RMMIGLG 167
            G    G   +A+ELFK    K ++       G + +        ++G     RM    G
Sbjct: 315 VGLAVNGFGKEALELFKELERKGLMPSEITFVGVL-YACSHCGMVDEGFDYFKRMKEEYG 373

Query: 168 IRPNASSLSSVLLGC--SHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDL-- 223
           I P          GC    L    L KQ H+ +   P+  +      L+      G L  
Sbjct: 374 IVPKIEH-----YGCMVDLLGRAGLVKQAHEFIQNMPMQPNAVVWRTLLGACTIHGHLAL 428

Query: 224 -EDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMK 270
            E A    L+++ K    +  + + YA   +     ++   M  EG+K
Sbjct: 429 GEVARAQLLQLEPKHSGDYVLLSNLYASEQRWSDVHKVRRTMLREGVK 476


>gi|124360227|gb|ABN08240.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 687

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 214/556 (38%), Positives = 332/556 (59%), Gaps = 22/556 (3%)

Query: 3   VKTTVNWNSVLAGFAKQRGKLKDAQELFDKI------PQPDVVSYNIMLSCILLN---SD 53
           V+  V+W S+ + + K  G  +   ++F ++      P P  VS +I+ +C  L    S 
Sbjct: 141 VRDVVSWTSLSSCYVKC-GFPRKGMDVFREMGWSGVKPNPMTVS-SILPACAELKDLKSG 198

Query: 54  DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE 113
             +  F     + + +    + ++S + +  ++ +AR +F  MP ++ VSW+ +++ Y +
Sbjct: 199 KEIHGFAVRHGMVV-NLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYFK 257

Query: 114 CGQLDKAVELFKVAPVKSVVA----WTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIR 169
             + +K   LF       V A    W A+I G M     EN  +E+ +++ R M  +G +
Sbjct: 258 NKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCM-----ENGRSEEAVEMFRKMQKMGFK 312

Query: 170 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 229
           PN  ++SS+L  CS   +L++GK++H  VF+     D T+ T L+ MY KCGDL  +  +
Sbjct: 313 PNEITISSILPACSFSENLRMGKEIHCYVFRHWKVGDLTSTTALLYMYAKCGDLNLSRNV 372

Query: 230 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLV 289
           F  ++RKDVV WN MI   A HG G++AL LFDKM    ++P+S+TF  +L  C+H+ LV
Sbjct: 373 FDMMRRKDVVAWNTMIIANAMHGNGKEALFLFDKMLLSRVQPNSVTFTGVLSGCSHSRLV 432

Query: 290 DLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLS 349
           + G+Q F+SM  D+ +    +HY+C+VD+  RAG+L EA   I+ MP +P  + +G LL+
Sbjct: 433 EEGVQIFNSMGRDHLVEPDANHYSCVVDIYSRAGRLNEAYKFIQGMPMEPTASAWGALLA 492

Query: 350 ACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVK 409
           ACRV+K ++LA+ +A  LF + P N  G YV L NI    K W + +++R+ MKE  + K
Sbjct: 493 ACRVYKNVELAKISAKKLFEIEP-NNPGNYVSLFNILVTAKMWSEASQVRILMKERGITK 551

Query: 410 MPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEV 469
            PG SW++VG  VH F  GD+ + E   I+  L EL ++MK+AGY PD ++ L  + +E 
Sbjct: 552 TPGCSWLQVGNKVHTFVVGDKSNIESDKIYNFLDELVEKMKMAGYKPDTDYVLQDIDQEE 611

Query: 470 KEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTT 529
           K + L  HSEKLA+AFG++ +   + IRVFKNLR+CGDCH A KY+S +    I+VRD+ 
Sbjct: 612 KAESLCNHSEKLAVAFGILNLNGQSTIRVFKNLRICGDCHNAIKYMSKVVGVIIVVRDSL 671

Query: 530 RFHHFKDGTCSCGDYW 545
           RFHHFK+G CSC D W
Sbjct: 672 RFHHFKNGNCSCKDLW 687



 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 90/357 (25%), Positives = 167/357 (46%), Gaps = 63/357 (17%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLN--SDDVVAAFDFFQR------LPIKDTAS 72
           G    A++LFD IPQPD  + + ++S +  +  S++ +  +   Q       +P+   A+
Sbjct: 26  GDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKPDMPVFLAAA 85

Query: 73  WNTMISG---FVQKKNMAKAR-----DLFLAMPEKNSVSWSAMISGYIECGQLDKAVELF 124
               +SG    V++ +    R     D+F+          +A+I  Y +C  ++ A  +F
Sbjct: 86  KACAVSGDALRVKEVHDDATRCGVMSDVFVG---------NALIHAYGKCKCVEGARRVF 136

Query: 125 KVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSH 184
               V+ VV+WT++ S Y+K G+        G+ + R M   G++PN  ++SS+L  C+ 
Sbjct: 137 DDLVVRDVVSWTSLSSCYVKCGF-----PRKGMDVFREMGWSGVKPNPMTVSSILPACAE 191

Query: 185 LSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAM 244
           L  L+ GK++H    +  +  +    + L+S+Y KC  + +A  +F  +  +DVV+WN +
Sbjct: 192 LKDLKSGKEIHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGV 251

Query: 245 ISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYG 304
           ++ Y ++ + EK   LF KM  +G++ D  T+ A++  C               M N   
Sbjct: 252 LTAYFKNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGC---------------MEN--- 293

Query: 305 IAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAE 361
                          GR+ + VE    ++KM FKP      ++L AC   + L + +
Sbjct: 294 ---------------GRSEEAVEMFRKMQKMGFKPNEITISSILPACSFSENLRMGK 335



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 40/75 (53%)

Query: 213 LISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPD 272
           LI +    GD   A +LF  I + D  T + +IS    HG   +A++++  +++ G+KPD
Sbjct: 18  LIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKPD 77

Query: 273 SITFVALLLACNHAG 287
              F+A   AC  +G
Sbjct: 78  MPVFLAAAKACAVSG 92


>gi|356569774|ref|XP_003553071.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 775

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 227/586 (38%), Positives = 325/586 (55%), Gaps = 48/586 (8%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIP--QPDVVSYNIMLSCILLNSDDVVAA 58
           M  + T+  NS++A F + +G ++ A+ +F+ +   + D+VS++ M+SC   N     A 
Sbjct: 197 MPERNTIASNSMIALFGR-KGCVEKARRIFNGVRGRERDMVSWSAMVSCYEQNEMGEEAL 255

Query: 59  FDFFQ-------------------------------------RLPIKDTASW-NTMISGF 80
             F +                                     ++ ++D  S  N +I  +
Sbjct: 256 VLFVEMKGSGVAVDEVVVVSALSACSRVLNVEMGRWVHGLAVKVGVEDYVSLKNALIHLY 315

Query: 81  VQKKNMAKARDLFLAMPEK-NSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMI 139
                +  AR +F    E  + +SW++MISGY+ CG +  A  LF   P K VV+W+AMI
Sbjct: 316 SSCGEIVDARRIFDDGGELLDLISWNSMISGYLRCGSIQDAEMLFYSMPEKDVVSWSAMI 375

Query: 140 SGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVF 199
           SGY      ++    + L L + M   G+RP+ ++L S +  C+HL++L LGK +H  + 
Sbjct: 376 SGY-----AQHECFSEALALFQEMQLHGVRPDETALVSAISACTHLATLDLGKWIHAYIS 430

Query: 200 KSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALR 259
           ++ L  +    T LI MY KCG +E+A ++F  ++ K V TWNA+I G A +G  E++L 
Sbjct: 431 RNKLQVNVILSTTLIDMYMKCGCVENALEVFYAMEEKGVSTWNAVILGLAMNGSVEQSLN 490

Query: 260 LFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLL 319
           +F  MK  G  P+ ITF+ +L AC H GLV+ G  YF+SM++++ I A   HY CMVDLL
Sbjct: 491 MFADMKKTGTVPNEITFMGVLGACRHMGLVNDGRHYFNSMIHEHKIEANIKHYGCMVDLL 550

Query: 320 GRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCY 379
           GRAG L EA +LI  MP  P  A +G LL ACR H+  ++ E     L  L P +  G +
Sbjct: 551 GRAGLLKEAEELIDSMPMAPDVATWGALLGACRKHRDNEMGERLGRKLIQLQP-DHDGFH 609

Query: 380 VQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIH 439
           V L+NIYA+   W +V  IR  M ++ VVK PG S IE    VHEF +GD+ HP++  I 
Sbjct: 610 VLLSNIYASKGNWGNVLEIRGIMAQHGVVKTPGCSMIEANGTVHEFLAGDKTHPQINDIE 669

Query: 440 EKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVF 499
             L  +  ++K+ GYVP        + EE KE  L  HSEKLA+AFGLI +   TPIRV 
Sbjct: 670 HMLDVVAAKLKIEGYVPTTSEVSLDIDEEEKETALFRHSEKLAVAFGLITISPPTPIRVT 729

Query: 500 KNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           KNLR+C DCH   K IS    R+I+VRD  RFHHFK G CSC D+W
Sbjct: 730 KNLRICNDCHTVVKLISKAFDRDIVVRDRHRFHHFKHGACSCMDFW 775



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 92/318 (28%), Positives = 160/318 (50%), Gaps = 40/318 (12%)

Query: 55  VVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIEC 114
           V +A   F+  P+ D  SWNT+++G+VQ   + +A  +F  MPE+N+++ ++MI+ +   
Sbjct: 156 VGSARRVFEESPVLDLVSWNTLLAGYVQAGEVEEAERVFEGMPERNTIASNSMIALFGRK 215

Query: 115 GQLDKAVELFK--VAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNA 172
           G ++KA  +F       + +V+W+AM+S Y      +N   E+ L L   M G G+  + 
Sbjct: 216 GCVEKARRIFNGVRGRERDMVSWSAMVSCYE-----QNEMGEEALVLFVEMKGSGVAVDE 270

Query: 173 SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPL----------------CK----------- 205
             + S L  CS + ++++G+ VH L  K  +                C            
Sbjct: 271 VVVVSALSACSRVLNVEMGRWVHGLAVKVGVEDYVSLKNALIHLYSSCGEIVDARRIFDD 330

Query: 206 -----DTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRL 260
                D  +   +IS Y +CG ++DA  LF  +  KDVV+W+AMISGYAQH    +AL L
Sbjct: 331 GGELLDLISWNSMISGYLRCGSIQDAEMLFYSMPEKDVVSWSAMISGYAQHECFSEALAL 390

Query: 261 FDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLG 320
           F +M+  G++PD    V+ + AC H   +DLG ++  + ++   +       T ++D+  
Sbjct: 391 FQEMQLHGVRPDETALVSAISACTHLATLDLG-KWIHAYISRNKLQVNVILSTTLIDMYM 449

Query: 321 RAGKLVEAVDLIKKMPFK 338
           + G +  A+++   M  K
Sbjct: 450 KCGCVENALEVFYAMEEK 467



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/147 (23%), Positives = 72/147 (48%), Gaps = 4/147 (2%)

Query: 120 AVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVL 179
           ++ +F      +   W  ++  ++   Y++NS     L   ++ +    +P++ +   +L
Sbjct: 57  SLRIFNHLRNPNTFTWNTIMRAHL---YLQNS-PHQALLHYKLFLASHAKPDSYTYPILL 112

Query: 180 LGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVV 239
             C+   S   G+Q+H     S    D      L+++Y  CG +  A ++F E    D+V
Sbjct: 113 QCCAARVSEFEGRQLHAHAVSSGFDGDVYVRNTLMNLYAVCGSVGSARRVFEESPVLDLV 172

Query: 240 TWNAMISGYAQHGKGEKALRLFDKMKD 266
           +WN +++GY Q G+ E+A R+F+ M +
Sbjct: 173 SWNTLLAGYVQAGEVEEAERVFEGMPE 199


>gi|449433569|ref|XP_004134570.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Cucumis sativus]
          Length = 705

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 215/548 (39%), Positives = 319/548 (58%), Gaps = 44/548 (8%)

Query: 1   MNVKTTVNWNSVLAGFAKQ---RGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVA 57
           M  K  V+WN+++AG A+       L+  +E+     +PD  + + +L  I  N D    
Sbjct: 199 MPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSFTLSSVLPLIAENVD---- 254

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQL 117
                         S    I G   ++ +    D+++A         S++I  Y +C ++
Sbjct: 255 -------------ISRGKEIHGCSIRQGLDA--DIYVA---------SSLIDMYAKCTRV 290

Query: 118 DKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSS 177
             +  +F +   +  ++W ++I+G      V+N   ++GL+  R M+   I+P + S SS
Sbjct: 291 ADSCRVFTLLTERDGISWNSIIAGC-----VQNGLFDEGLRFFRQMLMAKIKPKSYSFSS 345

Query: 178 VLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKD 237
           ++  C+HL++L LGKQ+H  + ++   ++    + L+ MY KCG++  A ++F  ++ +D
Sbjct: 346 IMPACAHLTTLHLGKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRD 405

Query: 238 VVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFD 297
           +V+W AMI G A HG+   A+ LF++M+ EG+K       A+L AC+H GLVD   +YF+
Sbjct: 406 MVSWTAMIMGCALHGQAPDAIELFEQMETEGIK-------AVLTACSHGGLVDEAWKYFN 458

Query: 298 SMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRL 357
           SM  D+GIA   +HY  + DLLGRAG+L EA D I  M   P  +I+ TLLSACRVHK +
Sbjct: 459 SMTRDFGIAPGVEHYAAVSDLLGRAGRLEEAYDFICGMHIGPTGSIWATLLSACRVHKNI 518

Query: 358 DLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIE 417
           D+AE  A  +  ++P N  G Y+ LANIY+A ++W + A+ R SM+   + K P  SWIE
Sbjct: 519 DMAEKVANRILEVDPNNT-GAYILLANIYSAARRWKEAAKWRASMRRIGIRKTPACSWIE 577

Query: 418 VGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFH 477
           V   V+ F +GD  HP    I E ++ L + M+  GYVPD     H V EE K+ L+  H
Sbjct: 578 VKNKVYAFMAGDESHPCYEKIREAMEVLVELMEKEGYVPDTSEVHHDVEEEQKKYLVCSH 637

Query: 478 SEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDG 537
           SE+LAI FG+I  P G  IRV KNLRVC DCH ATK+IS I  REI+VRD +RFHHFK+G
Sbjct: 638 SERLAIVFGIINTPAGMTIRVTKNLRVCTDCHTATKFISKIVGREIVVRDNSRFHHFKNG 697

Query: 538 TCSCGDYW 545
           TCSCGDYW
Sbjct: 698 TCSCGDYW 705



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 63/237 (26%), Positives = 122/237 (51%), Gaps = 7/237 (2%)

Query: 118 DKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSS 177
           D   ++F++ P K +V+W  +I+G  +     N   E+ L+++R M G  ++P++ +LSS
Sbjct: 190 DSVRKIFEMMPEKDLVSWNTIIAGNAR-----NGLYEETLRMIREMGGANLKPDSFTLSS 244

Query: 178 VLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKD 237
           VL   +    +  GK++H    +  L  D    + LI MY KC  + D+C++F  +  +D
Sbjct: 245 VLPLIAENVDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTLLTERD 304

Query: 238 VVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFD 297
            ++WN++I+G  Q+G  ++ LR F +M    +KP S +F +++ AC H   + LG Q   
Sbjct: 305 GISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQ-LH 363

Query: 298 SMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVH 354
             +   G        + +VD+  + G +  A  +  +M  +   + +  ++  C +H
Sbjct: 364 GYITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMVS-WTAMIMGCALH 419



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 81/362 (22%), Positives = 139/362 (38%), Gaps = 80/362 (22%)

Query: 111 YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRP 170
           Y     L  ++ LF        +AW ++I  Y   G    S     L     M+  G+ P
Sbjct: 50  YSHINLLHDSLRLFNTIHFPPALAWKSVIRCYTSHGLPHQS-----LGSFIGMLASGLYP 104

Query: 171 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC--- 227
           + +   SVL  C+ L  L LG+ +H  + +  L  D      L++MY K   LE++    
Sbjct: 105 DHNVFPSVLKSCALLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQR 164

Query: 228 -----------------------------KLFLEIQRKDVVTWNAMISGYAQHGKGEKAL 258
                                        K+F  +  KD+V+WN +I+G A++G  E+ L
Sbjct: 165 LGAGEVFDEMTERTRSVRTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETL 224

Query: 259 RLFDKMKDEGMKPDSITFVALL---------------LACNHAGLVDLGIQYFDSMVNDY 303
           R+  +M    +KPDS T  ++L                 C+    +D  I    S+++ Y
Sbjct: 225 RMIREMGGANLKPDSFTLSSVLPLIAENVDISRGKEIHGCSIRQGLDADIYVASSLIDMY 284

Query: 304 G----IAAKPDHYTCMVDLLG-----------RAGKLVEAVDLIKKM---PFKPQPAIFG 345
                +A     +T + +  G           + G   E +   ++M     KP+   F 
Sbjct: 285 AKCTRVADSCRVFTLLTERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFS 344

Query: 346 TLLSAC----RVHKRLDLAEFAAMNLFNLN---PANAAGCYVQLANIYAAMKKWDDVARI 398
           +++ AC     +H    L  +   N F+ N    ++    Y +  NI  A + +D   R+
Sbjct: 345 SIMPACAHLTTLHLGKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFD---RM 401

Query: 399 RL 400
           RL
Sbjct: 402 RL 403



 Score = 40.0 bits (92), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 2/78 (2%)

Query: 216 MYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSIT 275
           +Y     L D+ +LF  I     + W ++I  Y  HG   ++L  F  M   G+ PD   
Sbjct: 49  IYSHINLLHDSLRLFNTIHFPPALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNV 108

Query: 276 FVALLLACNHAGLVDLGI 293
           F ++L +C  A L+DL +
Sbjct: 109 FPSVLKSC--ALLMDLNL 124


>gi|224140549|ref|XP_002323645.1| predicted protein [Populus trichocarpa]
 gi|222868275|gb|EEF05406.1| predicted protein [Populus trichocarpa]
          Length = 682

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 220/527 (41%), Positives = 293/527 (55%), Gaps = 45/527 (8%)

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPE------------------- 98
           AF  F  +P K+ ASW   ISG+V      +A D+F  + E                   
Sbjct: 162 AFKVFDDIPDKNFASWTATISGYVGVGKCREAIDMFRRLLEMGLRPDSFSLVEVLSACKR 221

Query: 99  --------------------KNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAM 138
                               +N    +A++  Y +CG +++A  +F     K++V+W++M
Sbjct: 222 TGDLRSGEWIDEYITENGMVRNVFVATALVDFYGKCGNMERARSVFDGMLEKNIVSWSSM 281

Query: 139 ISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLV 198
           I GY       N   ++ L L   M+  G++P+  ++  VL  C+ L +L+LG     L+
Sbjct: 282 IQGY-----ASNGLPKEALDLFFKMLNEGLKPDCYAMVGVLCSCARLGALELGDWASNLI 336

Query: 199 FKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKAL 258
             +    ++   T LI MY KCG ++ A ++F  +++KD V WNA ISG A  G  + AL
Sbjct: 337 NGNEFLDNSVLGTALIDMYAKCGRMDRAWEVFRGMRKKDRVVWNAAISGLAMSGHVKDAL 396

Query: 259 RLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDL 318
            LF +M+  G+KPD  TFV LL AC HAGLV+ G +YF+SM   + +  + +HY CMVDL
Sbjct: 397 GLFGQMEKSGIKPDRNTFVGLLCACTHAGLVEEGRRYFNSMECVFTLTPEIEHYGCMVDL 456

Query: 319 LGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGC 378
           LGRAG L EA  LIK MP +    ++G LL  CR+H+   L E     L  L P ++ G 
Sbjct: 457 LGRAGCLDEAHQLIKSMPMEANAIVWGALLGGCRLHRDTQLVEVVLKKLIALEPWHS-GN 515

Query: 379 YVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSI 438
           YV L+NIYAA  KW++ A+IR  M E  V K+PGYSWIEV  VVH+F  GD  HP    I
Sbjct: 516 YVLLSNIYAASHKWEEAAKIRSIMSERGVKKIPGYSWIEVDGVVHQFLVGDTSHPLSEKI 575

Query: 439 HEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRV 498
           + KL EL K +K AGYVP  +  L  + EE KE  +  HSEKLA+AFGLI       I V
Sbjct: 576 YAKLGELAKDLKAAGYVPTTDHVLFDIEEEEKEHFIGCHSEKLAVAFGLISTAPNDKILV 635

Query: 499 FKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
            KNLRVCGDCH A K+IS I  REIIVRD  RFH F DG CSC DYW
Sbjct: 636 VKNLRVCGDCHEAIKHISRIAGREIIVRDNNRFHCFTDGLCSCKDYW 682



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 100/377 (26%), Positives = 187/377 (49%), Gaps = 27/377 (7%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
           N VL  F+   G    +  + D+  +P++  +N M+  ++LN D    + + +  +  K+
Sbjct: 46  NKVLR-FSFNFGNTNYSFRILDQTKEPNIFLFNTMIRGLVLN-DCFQESIEIYHSMR-KE 102

Query: 70  TASWNTMISGFVQKKNMAKARDLFLAMP----------EKNSVSWSAMISGYIECGQLDK 119
             S ++    FV K   A+  D  L +           E ++    ++I+ Y +CG +D 
Sbjct: 103 GLSPDSFTFPFVLKA-CARVLDSELGVKMHSLVVKAGCEADAFVKISLINLYTKCGFIDN 161

Query: 120 AVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVL 179
           A ++F   P K+  +WTA ISGY+  G        + + + R ++ +G+RP++ SL  VL
Sbjct: 162 AFKVFDDIPDKNFASWTATISGYVGVGK-----CREAIDMFRRLLEMGLRPDSFSLVEVL 216

Query: 180 LGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVV 239
             C     L+ G+ + + + ++ + ++    T L+  Y KCG++E A  +F  +  K++V
Sbjct: 217 SACKRTGDLRSGEWIDEYITENGMVRNVFVATALVDFYGKCGNMERARSVFDGMLEKNIV 276

Query: 240 TWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSM 299
           +W++MI GYA +G  ++AL LF KM +EG+KPD    V +L +C   G ++LG  +  ++
Sbjct: 277 SWSSMIQGYASNGLPKEALDLFFKMLNEGLKPDCYAMVGVLCSCARLGALELG-DWASNL 335

Query: 300 VNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQ----PAIFGTLLSACRVHK 355
           +N           T ++D+  + G++  A ++ + M  K +     AI G  +S    H 
Sbjct: 336 INGNEFLDNSVLGTALIDMYAKCGRMDRAWEVFRGMRKKDRVVWNAAISGLAMSG---HV 392

Query: 356 RLDLAEFAAMNLFNLNP 372
           +  L  F  M    + P
Sbjct: 393 KDALGLFGQMEKSGIKP 409



 Score = 52.0 bits (123), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 35/154 (22%), Positives = 72/154 (46%), Gaps = 1/154 (0%)

Query: 185 LSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAM 244
            S L+  K +H  + +  L +DT  L  ++      G+   + ++  + +  ++  +N M
Sbjct: 20  FSCLKHLKHIHAALLRLGLDEDTYLLNKVLRFSFNFGNTNYSFRILDQTKEPNIFLFNTM 79

Query: 245 ISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYG 304
           I G   +   ++++ ++  M+ EG+ PDS TF  +L AC      +LG++   S+V   G
Sbjct: 80  IRGLVLNDCFQESIEIYHSMRKEGLSPDSFTFPFVLKACARVLDSELGVK-MHSLVVKAG 138

Query: 305 IAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 338
             A       +++L  + G +  A  +   +P K
Sbjct: 139 CEADAFVKISLINLYTKCGFIDNAFKVFDDIPDK 172


>gi|297740529|emb|CBI30711.3| unnamed protein product [Vitis vinifera]
          Length = 697

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 211/549 (38%), Positives = 318/549 (57%), Gaps = 33/549 (6%)

Query: 9   WNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK 68
           WN ++ G+AK  G  +++  LF ++ +              L    V +A   F  L  +
Sbjct: 170 WNLLMNGYAKI-GNFRESLSLFKRMRE--------------LGIRRVESARKLFDELGDR 214

Query: 69  DTASWNTMISGFVQKKNMAKARDLFLAM---------PEKNSVSWS---AMISGYIECGQ 116
           D  SWN+MISG+V      K  DLF  M             SV  +    ++  Y + G 
Sbjct: 215 DVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVELTLNNCLLDMYSKSGN 274

Query: 117 LDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLS 176
           L+ A+++F+    +SVV+WT+MI+GY + G  + S     ++L   M    + PN+ +++
Sbjct: 275 LNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMS-----VRLFHEMEKEDLFPNSITMA 329

Query: 177 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK 236
            +L  C+ L++L+ G+++H  + ++    D      L+ MY KCG L  A  LF  I  K
Sbjct: 330 CILPACASLAALERGQEIHGHILRNGFSLDRHVANALVDMYLKCGALGLARLLFDMIPEK 389

Query: 237 DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYF 296
           D+V+W  MI+GY  HG G +A+  F++M++ G++PD ++F+++L AC+H+GL+D G  +F
Sbjct: 390 DLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYACSHSGLLDEGWGFF 449

Query: 297 DSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKR 356
           + M N+  I  K +HY C+VDLL RAG L +A   IK MP +P   I+G LL  CR++  
Sbjct: 450 NMMRNNCCIEPKSEHYACIVDLLARAGNLSKAYKFIKMMPIEPDATIWGALLCGCRIYHD 509

Query: 357 LDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWI 416
           + LAE  A ++F L P N  G YV LANIYA  +KW++V ++R  +    + K PG SWI
Sbjct: 510 VKLAEKVAEHVFELEPEN-TGYYVLLANIYAEAEKWEEVKKLRERIGRRGLRKNPGCSWI 568

Query: 417 EVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLF 476
           E+   VH F +GD  HP    I   LK+   RMK  G+ P + +AL    +  KE  L  
Sbjct: 569 EIKGKVHIFVTGDSSHPLANKIELLLKKTRTRMKEEGHFPKMRYALIKADDTEKEMALCG 628

Query: 477 HSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKD 536
           HSEK+A+AFG++ +P G  +RV KNLRVCGDCH   K++S + KR+II+RD+ RFHHFKD
Sbjct: 629 HSEKIAMAFGILSLPPGKTVRVTKNLRVCGDCHEMAKFMSKMVKRDIILRDSNRFHHFKD 688

Query: 537 GTCSCGDYW 545
           G+CSC  +W
Sbjct: 689 GSCSCRGHW 697



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 86/341 (25%), Positives = 154/341 (45%), Gaps = 56/341 (16%)

Query: 21  GKLKDAQELFDKIPQPDV---VSYNIMLSCILLNS-DDVVAAFDFFQRLPIK-DTASWNT 75
           G L+ A EL ++ P+PD+      +++  C  L S  D        Q   ++ D    + 
Sbjct: 82  GNLRRAMELINQSPKPDLELRTYCSVLQLCADLKSIQDGRRIHSIIQSNDVEVDGVLGSK 141

Query: 76  MISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFK------VAPV 129
           ++  +V   ++ + R +F  +  +    W+ +++GY + G   +++ LFK      +  V
Sbjct: 142 LVFMYVTCGDLREGRRIFDKVANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRRV 201

Query: 130 KS------------VVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSS 177
           +S            V++W +MIS     GYV N  +E GL L   M+ LGI  + +++ S
Sbjct: 202 ESARKLFDELGDRDVISWNSMIS-----GYVSNGLSEKGLDLFEQMLLLGINTDLATMVS 256

Query: 178 VLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKD 237
           V L                           T    L+ MY K G+L  A ++F  +  + 
Sbjct: 257 VEL---------------------------TLNNCLLDMYSKSGNLNSAIQVFETMGERS 289

Query: 238 VVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFD 297
           VV+W +MI+GYA+ G  + ++RLF +M+ E + P+SIT   +L AC     ++ G +   
Sbjct: 290 VVSWTSMIAGYAREGLSDMSVRLFHEMEKEDLFPNSITMACILPACASLAALERGQEIHG 349

Query: 298 SMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 338
            ++ + G +        +VD+  + G L  A  L   +P K
Sbjct: 350 HILRN-GFSLDRHVANALVDMYLKCGALGLARLLFDMIPEK 389



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 73/331 (22%), Positives = 138/331 (41%), Gaps = 67/331 (20%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  ++ V+W S++AG+A++ G    +  LF ++ + D+   +I ++CIL      +AA +
Sbjct: 285 MGERSVVSWTSMIAGYARE-GLSDMSVRLFHEMEKEDLFPNSITMACILPACAS-LAALE 342

Query: 61  FFQRLPIK--------DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYI 112
             Q +           D    N ++  +++   +  AR LF  +PEK+ VSW+ MI+GY 
Sbjct: 343 RGQEIHGHILRNGFSLDRHVANALVDMYLKCGALGLARLLFDMIPEKDLVSWTVMIAGYG 402

Query: 113 ECGQLDKAVELFKVAPVKSV----VAWTAMISGYMKFGYVENSWA--------------- 153
             G   +A+  F       +    V++ +++      G ++  W                
Sbjct: 403 MHGYGSEAIAAFNEMRNSGIEPDEVSFISILYACSHSGLLDEGWGFFNMMRNNCCIEPKS 462

Query: 154 ----------------EDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQL 197
                               K ++MM    I P+A+   ++L GC     ++L ++V + 
Sbjct: 463 EHYACIVDLLARAGNLSKAYKFIKMM---PIEPDATIWGALLCGCRIYHDVKLAEKVAEH 519

Query: 198 VFK-SPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDV-----VTW-------NAM 244
           VF+  P  ++T     L ++Y +    E+  KL   I R+ +      +W       +  
Sbjct: 520 VFELEP--ENTGYYVLLANIYAEAEKWEEVKKLRERIGRRGLRKNPGCSWIEIKGKVHIF 577

Query: 245 ISGYAQHGKGEKALRLFDK----MKDEGMKP 271
           ++G + H    K   L  K    MK+EG  P
Sbjct: 578 VTGDSSHPLANKIELLLKKTRTRMKEEGHFP 608


>gi|30688521|ref|NP_850342.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|18491267|gb|AAL69458.1| At2g41080/T3K9.15 [Arabidopsis thaliana]
 gi|330254831|gb|AEC09925.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 565

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 222/565 (39%), Positives = 315/565 (55%), Gaps = 47/565 (8%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G    A  ++ ++ + + +S NI+++   + + D+V A   F  +P +   +WN MI+G 
Sbjct: 8   GDFPSAVAVYGRMRKKNYMSSNILING-YVRAGDLVNARKVFDEMPDRKLTTWNAMIAGL 66

Query: 81  VQKKNMAKARDLFLAM------PEK-------------NSVSWSAMISGY---------- 111
           +Q +   +   LF  M      P++              SVS    I GY          
Sbjct: 67  IQFEFNEEGLSLFREMHGLGFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYTIKYGLELDL 126

Query: 112 ----------IECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLR 161
                     +  G+L     + +  PV+++VAW  +I      G  +N   E  L L +
Sbjct: 127 VVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLI-----MGNAQNGCPETVLYLYK 181

Query: 162 MMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCG 221
           MM   G RPN  +  +VL  CS L+    G+Q+H    K         ++ LISMY KCG
Sbjct: 182 MMKISGCRPNKITFVTVLSSCSDLAIRGQGQQIHAEAIKIGASSVVAVVSSLISMYSKCG 241

Query: 222 DLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE-GMKPDSITFVALL 280
            L DA K F E + +D V W++MIS Y  HG+G++A+ LF+ M ++  M+ + + F+ LL
Sbjct: 242 CLGDAAKAFSEREDEDEVMWSSMISAYGFHGQGDEAIELFNTMAEQTNMEINEVAFLNLL 301

Query: 281 LACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQ 340
            AC+H+GL D G++ FD MV  YG      HYTC+VDLLGRAG L +A  +I+ MP K  
Sbjct: 302 YACSHSGLKDKGLELFDMMVEKYGFKPGLKHYTCVVDLLGRAGCLDQAEAIIRSMPIKTD 361

Query: 341 PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRL 400
             I+ TLLSAC +HK  ++A+     +  ++P N + CYV LAN++A+ K+W DV+ +R 
Sbjct: 362 IVIWKTLLSACNIHKNAEMAQRVFKEILQIDP-NDSACYVLLANVHASAKRWRDVSEVRK 420

Query: 401 SMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEF 460
           SM++ NV K  G SW E    VH+F+ GDR   +   I+  LKEL   MKL GY PD   
Sbjct: 421 SMRDKNVKKEAGISWFEHKGEVHQFKMGDRSQSKSKEIYSYLKELTLEMKLKGYKPDTAS 480

Query: 461 ALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEK 520
            LH + EE KE  L+ HSEKLA+AF L+ +P G PIR+ KNLRVC DCH A KYIS I+ 
Sbjct: 481 VLHDMDEEEKESDLVQHSEKLAVAFALMILPEGAPIRIIKNLRVCSDCHVAFKYISVIKN 540

Query: 521 REIIVRDTTRFHHFKDGTCSCGDYW 545
           REI +RD +RFHHF +G CSCGDYW
Sbjct: 541 REITLRDGSRFHHFINGKCSCGDYW 565



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 54/110 (49%), Gaps = 7/110 (6%)

Query: 214 ISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDS 273
           +SMY K GD   A  ++  +++K+ ++ N +I+GY + G    A ++FD+M D  +    
Sbjct: 1   MSMYSKLGDFPSAVAVYGRMRKKNYMSSNILINGYVRAGDLVNARKVFDEMPDRKL---- 56

Query: 274 ITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAG 323
            T+ A++         + G+  F  M   +G+   PD YT      G AG
Sbjct: 57  TTWNAMIAGLIQFEFNEEGLSLFREM---HGLGFSPDEYTLGSVFSGSAG 103


>gi|218546768|sp|Q8S9M4.2|PP198_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g41080
          Length = 650

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 224/576 (38%), Positives = 322/576 (55%), Gaps = 48/576 (8%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
           N +++ ++K  G    A  ++ ++ + + +S NI+++   + + D+V A   F  +P + 
Sbjct: 83  NHLMSMYSKL-GDFPSAVAVYGRMRKKNYMSSNILING-YVRAGDLVNARKVFDEMPDRK 140

Query: 70  TASWNTMISGFVQKKNMAKARDLFLAM------PEK-------------NSVSWSAMISG 110
             +WN MI+G +Q +   +   LF  M      P++              SVS    I G
Sbjct: 141 LTTWNAMIAGLIQFEFNEEGLSLFREMHGLGFSPDEYTLGSVFSGSAGLRSVSIGQQIHG 200

Query: 111 Y--------------------IECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVEN 150
           Y                    +  G+L     + +  PV+++VAW  +I      G  +N
Sbjct: 201 YTIKYGLELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLI-----MGNAQN 255

Query: 151 SWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTAL 210
              E  L L +MM   G RPN  +  +VL  CS L+    G+Q+H    K         +
Sbjct: 256 GCPETVLYLYKMMKISGCRPNKITFVTVLSSCSDLAIRGQGQQIHAEAIKIGASSVVAVV 315

Query: 211 TPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE-GM 269
           + LISMY KCG L DA K F E + +D V W++MIS Y  HG+G++A+ LF+ M ++  M
Sbjct: 316 SSLISMYSKCGCLGDAAKAFSEREDEDEVMWSSMISAYGFHGQGDEAIELFNTMAEQTNM 375

Query: 270 KPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAV 329
           + + + F+ LL AC+H+GL D G++ FD MV  YG      HYTC+VDLLGRAG L +A 
Sbjct: 376 EINEVAFLNLLYACSHSGLKDKGLELFDMMVEKYGFKPGLKHYTCVVDLLGRAGCLDQAE 435

Query: 330 DLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAM 389
            +I+ MP K    I+ TLLSAC +HK  ++A+     +  ++P N + CYV LAN++A+ 
Sbjct: 436 AIIRSMPIKTDIVIWKTLLSACNIHKNAEMAQRVFKEILQIDP-NDSACYVLLANVHASA 494

Query: 390 KKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRM 449
           K+W DV+ +R SM++ NV K  G SW E    VH+F+ GDR   +   I+  LKEL   M
Sbjct: 495 KRWRDVSEVRKSMRDKNVKKEAGISWFEHKGEVHQFKMGDRSQSKSKEIYSYLKELTLEM 554

Query: 450 KLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCH 509
           KL GY PD    LH + EE KE  L+ HSEKLA+AF L+ +P G PIR+ KNLRVC DCH
Sbjct: 555 KLKGYKPDTASVLHDMDEEEKESDLVQHSEKLAVAFALMILPEGAPIRIIKNLRVCSDCH 614

Query: 510 RATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
            A KYIS I+ REI +RD +RFHHF +G CSCGDYW
Sbjct: 615 VAFKYISVIKNREITLRDGSRFHHFINGKCSCGDYW 650



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 74/158 (46%), Gaps = 7/158 (4%)

Query: 166 LGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLED 225
           L I  N S  +  +  C+   SL  GKQ+H L+  S    D      L+SMY K GD   
Sbjct: 38  LNIFTNTSLFTPFIQSCTTRQSLPSGKQLHCLLVVSGFSSDKFICNHLMSMYSKLGDFPS 97

Query: 226 ACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNH 285
           A  ++  +++K+ ++ N +I+GY + G    A ++FD+M D  +     T+ A++     
Sbjct: 98  AVAVYGRMRKKNYMSSNILINGYVRAGDLVNARKVFDEMPDRKL----TTWNAMIAGLIQ 153

Query: 286 AGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAG 323
               + G+  F  M   +G+   PD YT      G AG
Sbjct: 154 FEFNEEGLSLFREM---HGLGFSPDEYTLGSVFSGSAG 188


>gi|147780607|emb|CAN69113.1| hypothetical protein VITISV_031840 [Vitis vinifera]
          Length = 714

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 209/535 (39%), Positives = 319/535 (59%), Gaps = 18/535 (3%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWN-----T 75
           G  +DAQ LFD++P  D+VS+N ++S  L     + A  + F R+  +     N     +
Sbjct: 188 GYDEDAQRLFDEMPNRDLVSWNSLMSG-LSGRGYLGACLNAFCRMRTESGRQPNEVTLLS 246

Query: 76  MISGFVQKKNMAKARDLF-----LAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVK 130
           ++S       + + + L      L M  K  V  +++I+ Y + G LD A +LF+  PV+
Sbjct: 247 VVSACAXMGALDEGKSLHGVVVKLGMSGKAKVV-NSLINMYGKLGFLDAASQLFEEMPVR 305

Query: 131 SVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQL 190
           S+V+W +M+  +   GY     AE G+ L  +M   GI P+ +++ ++L  C+     + 
Sbjct: 306 SLVSWNSMVVIHNHNGY-----AEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQ 360

Query: 191 GKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQ 250
            + +H  + +     D    T L+++Y K G L  +  +F EI+ +D + W AM++GYA 
Sbjct: 361 AESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEIKDRDTIAWTAMLAGYAV 420

Query: 251 HGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPD 310
           H  G +A++LFD M  EG++ D +TF  LL AC+H+GLV+ G +YF+ M   Y +  + D
Sbjct: 421 HACGREAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLD 480

Query: 311 HYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNL 370
           HY+CMVDLLGR+G+L +A +LIK MP +P   ++G LL ACRV+  ++L +  A  L +L
Sbjct: 481 HYSCMVDLLGRSGRLEDAYELIKSMPMEPSSGVWGALLGACRVYGNVELGKEVAEQLLSL 540

Query: 371 NPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDR 430
           +P++    Y+ L+NIY+A   W   +++R  MKE  + + PG S+IE G  +H F  GD+
Sbjct: 541 DPSDHRN-YIMLSNIYSAAGLWRXASKVRXLMKERRLTRNPGCSFIEHGNKIHRFVVGDQ 599

Query: 431 VHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKV 490
           +HP    IH KL+EL +++  AG  P  EF LH + EEVK  ++  HSEKLAIAFGL+  
Sbjct: 600 LHPRSDEIHTKLEELIRKIXEAGCAPKTEFVLHDIDEEVKVDMINKHSEKLAIAFGLLVT 659

Query: 491 PLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
             G P+ + KNLR+CGDCH   K+ S +EKR II+RD+ RFHHF DG CSC DYW
Sbjct: 660 GSGVPLIITKNLRICGDCHSTAKFASLLEKRTIIIRDSKRFHHFADGLCSCRDYW 714



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 69/229 (30%), Positives = 118/229 (51%), Gaps = 5/229 (2%)

Query: 107 MISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGL 166
           ++S Y + G  + A  LF   P + +V+W +++SG    GY+            RM    
Sbjct: 180 LVSMYFKLGYDEDAQRLFDEMPNRDLVSWNSLMSGLSGRGYLGACLN----AFCRMRTES 235

Query: 167 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 226
           G +PN  +L SV+  C+ + +L  GK +H +V K  +      +  LI+MY K G L+ A
Sbjct: 236 GRQPNEVTLLSVVSACAXMGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAA 295

Query: 227 CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHA 286
            +LF E+  + +V+WN+M+  +  +G  EK + LF+ MK  G+ PD  T VALL AC   
Sbjct: 296 SQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDT 355

Query: 287 GLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335
           GL     +   + ++  G  A     T +++L  + G+L  + D+ +++
Sbjct: 356 GL-GRQAESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEI 403



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 64/225 (28%), Positives = 108/225 (48%), Gaps = 9/225 (4%)

Query: 173 SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLE 232
           S + S++   S  +S+     +H  V KS    D      L+SMY K G  EDA +LF E
Sbjct: 140 SIVQSLVFAISSCTSVSYCSAIHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDE 199

Query: 233 IQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE-GMKPDSITFVALLLACNHAGLVDL 291
           +  +D+V+WN+++SG +  G     L  F +M+ E G +P+ +T ++++ AC   G +D 
Sbjct: 200 MPNRDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACAXMGALDE 259

Query: 292 GIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSAC 351
           G +    +V   G++ K      ++++ G+ G L  A  L ++MP +       +  S  
Sbjct: 260 G-KSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRS----LVSWNSMV 314

Query: 352 RVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVA 396
            +H     AE   M+LFNL     AG     A + A ++   D  
Sbjct: 315 VIHNHNGYAE-KGMDLFNL--MKRAGINPDQATMVALLRACTDTG 356


>gi|3402709|gb|AAD12003.1| hypothetical protein [Arabidopsis thaliana]
          Length = 563

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 222/565 (39%), Positives = 315/565 (55%), Gaps = 47/565 (8%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G    A  ++ ++ + + +S NI+++   + + D+V A   F  +P +   +WN MI+G 
Sbjct: 6   GDFPSAVAVYGRMRKKNYMSSNILING-YVRAGDLVNARKVFDEMPDRKLTTWNAMIAGL 64

Query: 81  VQKKNMAKARDLFLAM------PEK-------------NSVSWSAMISGY---------- 111
           +Q +   +   LF  M      P++              SVS    I GY          
Sbjct: 65  IQFEFNEEGLSLFREMHGLGFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYTIKYGLELDL 124

Query: 112 ----------IECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLR 161
                     +  G+L     + +  PV+++VAW  +I      G  +N   E  L L +
Sbjct: 125 VVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLI-----MGNAQNGCPETVLYLYK 179

Query: 162 MMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCG 221
           MM   G RPN  +  +VL  CS L+    G+Q+H    K         ++ LISMY KCG
Sbjct: 180 MMKISGCRPNKITFVTVLSSCSDLAIRGQGQQIHAEAIKIGASSVVAVVSSLISMYSKCG 239

Query: 222 DLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE-GMKPDSITFVALL 280
            L DA K F E + +D V W++MIS Y  HG+G++A+ LF+ M ++  M+ + + F+ LL
Sbjct: 240 CLGDAAKAFSEREDEDEVMWSSMISAYGFHGQGDEAIELFNTMAEQTNMEINEVAFLNLL 299

Query: 281 LACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQ 340
            AC+H+GL D G++ FD MV  YG      HYTC+VDLLGRAG L +A  +I+ MP K  
Sbjct: 300 YACSHSGLKDKGLELFDMMVEKYGFKPGLKHYTCVVDLLGRAGCLDQAEAIIRSMPIKTD 359

Query: 341 PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRL 400
             I+ TLLSAC +HK  ++A+     +  ++P N + CYV LAN++A+ K+W DV+ +R 
Sbjct: 360 IVIWKTLLSACNIHKNAEMAQRVFKEILQIDP-NDSACYVLLANVHASAKRWRDVSEVRK 418

Query: 401 SMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEF 460
           SM++ NV K  G SW E    VH+F+ GDR   +   I+  LKEL   MKL GY PD   
Sbjct: 419 SMRDKNVKKEAGISWFEHKGEVHQFKMGDRSQSKSKEIYSYLKELTLEMKLKGYKPDTAS 478

Query: 461 ALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEK 520
            LH + EE KE  L+ HSEKLA+AF L+ +P G PIR+ KNLRVC DCH A KYIS I+ 
Sbjct: 479 VLHDMDEEEKESDLVQHSEKLAVAFALMILPEGAPIRIIKNLRVCSDCHVAFKYISVIKN 538

Query: 521 REIIVRDTTRFHHFKDGTCSCGDYW 545
           REI +RD +RFHHF +G CSCGDYW
Sbjct: 539 REITLRDGSRFHHFINGKCSCGDYW 563



 Score = 47.4 bits (111), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 52/108 (48%), Gaps = 7/108 (6%)

Query: 216 MYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSIT 275
           MY K GD   A  ++  +++K+ ++ N +I+GY + G    A ++FD+M D  +     T
Sbjct: 1   MYSKLGDFPSAVAVYGRMRKKNYMSSNILINGYVRAGDLVNARKVFDEMPDRKL----TT 56

Query: 276 FVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAG 323
           + A++         + G+  F  M   +G+   PD YT      G AG
Sbjct: 57  WNAMIAGLIQFEFNEEGLSLFREM---HGLGFSPDEYTLGSVFSGSAG 101


>gi|242076234|ref|XP_002448053.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
 gi|241939236|gb|EES12381.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
          Length = 693

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 215/538 (39%), Positives = 313/538 (58%), Gaps = 35/538 (6%)

Query: 26  AQELFDKIPQPDVVSYNIMLSCILLNSD------------DVVAAFDFFQRLPIKDT--- 70
           AQ LFD + +  VV +N +++  + N +            +V  AFD    + +      
Sbjct: 173 AQLLFDAVEENGVVMWNAIITAYMKNGNWMEVVEMFKGMLEVGVAFDEITLVSVVTACGR 232

Query: 71  ---ASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVA 127
              A     ++ +V +K + + R+L            +A+I  Y +CG+L KA  LF   
Sbjct: 233 IGDAKLGKWVAEYVDEKGLVRNRNLM-----------TALIDMYAKCGELGKARRLFDGM 281

Query: 128 PVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSS 187
             + VVAW+AMISGY      +     + L L   M    + PN  ++ SVL  C+ L +
Sbjct: 282 QSRDVVAWSAMISGY-----TQADQCREALALFSEMQLAEVEPNDVTMVSVLSACAVLGA 336

Query: 188 LQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISG 247
           L+ GK VH  + +  L       T L+  Y KCG ++DA + F  +  K+  TW A+I G
Sbjct: 337 LETGKWVHSYIRRKRLSLTIILGTALVDFYAKCGCIDDAVEAFESMPVKNSWTWTALIKG 396

Query: 248 YAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAA 307
            A +G+G +AL LF  M+   ++P  +TF+ +L+AC+H+ LV+ G ++FDSM  DYGI  
Sbjct: 397 MATNGRGREALELFSSMRKASIEPTDVTFIGVLMACSHSCLVEEGRRHFDSMTQDYGIKP 456

Query: 308 KPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNL 367
           + +HY C+VDLLGRAG + EA   I+ MP +P   I+  LLS+C VHK +++ E A   +
Sbjct: 457 RAEHYGCVVDLLGRAGLIDEAYQFIRTMPIEPNAVIWRALLSSCAVHKNVEIGEEALKQI 516

Query: 368 FNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRS 427
            +LNP+++ G Y+ L+NIYA++ +W + A IR  MK+  + K PG S IE+  VV EF +
Sbjct: 517 VSLNPSHS-GDYILLSNIYASVGQWKNAAMIRKEMKDRGIEKTPGCSLIELDGVVVEFFA 575

Query: 428 GDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGL 487
            D  HP+L  I++K++E+  R+K+AGY+P+       V E  KE  +  HSEKLAIAFGL
Sbjct: 576 EDSDHPQLKEIYQKVEEMIDRIKMAGYIPNTADVRLEVDEHEKEVSVSHHSEKLAIAFGL 635

Query: 488 IKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           +K+  G  IR+ KNLRVC DCH ATK IS +  REI+VRD  RFHHFKDGTCSC DYW
Sbjct: 636 MKLDPGATIRLSKNLRVCTDCHSATKLISKVYNREIVVRDRNRFHHFKDGTCSCNDYW 693



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 69/260 (26%), Positives = 122/260 (46%), Gaps = 10/260 (3%)

Query: 117 LDKAVELFKVAPVK--SVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLG-IRPNAS 173
           L  AV LF++ P    S   +  ++   +  G+      ED L L   M+ +  + P+  
Sbjct: 66  LPYAVSLFRLGPRPPLSTPCYNVLMRALLHAGH-----PEDALHLFVEMLDVASVCPDQH 120

Query: 174 SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI 233
           +++  L  CS + +L +G+ +     K  L  D   L+ LI MY  C D+  A  LF  +
Sbjct: 121 TVACALKSCSRMCTLDVGRGIQAYAVKRGLMADRFVLSSLIHMYASCRDVAAAQLLFDAV 180

Query: 234 QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGI 293
           +   VV WNA+I+ Y ++G   + + +F  M + G+  D IT V+++ AC   G   LG 
Sbjct: 181 EENGVVMWNAIITAYMKNGNWMEVVEMFKGMLEVGVAFDEITLVSVVTACGRIGDAKLG- 239

Query: 294 QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRV 353
           ++    V++ G+    +  T ++D+  + G+L +A  L   M  +   A    +    + 
Sbjct: 240 KWVAEYVDEKGLVRNRNLMTALIDMYAKCGELGKARRLFDGMQSRDVVAWSAMISGYTQA 299

Query: 354 HK-RLDLAEFAAMNLFNLNP 372
            + R  LA F+ M L  + P
Sbjct: 300 DQCREALALFSEMQLAEVEP 319


>gi|357167843|ref|XP_003581359.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like, partial [Brachypodium distachyon]
          Length = 745

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 215/550 (39%), Positives = 314/550 (57%), Gaps = 41/550 (7%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFD-----KIPQPDVVSYNIMLSCILLNSDDV 55
           + VK  + WN+++AG+ K  G  K+  E+F      + P  +V   ++  +C        
Sbjct: 232 VQVKGVIAWNAMIAGYVKN-GDWKEVVEMFKGMLEVRAPFDEVTLLSVATAC-------- 282

Query: 56  VAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECG 115
                   RL   +   W   I+ + ++K M ++R+L            +A++  Y +CG
Sbjct: 283 -------GRLGDANLGQW---IAEYAEEKGMLRSRNLA-----------TALVDMYAKCG 321

Query: 116 QLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSL 175
           +LDKA  LF     + VVAW+AMISGY      ++    + L +   M G  + PN  ++
Sbjct: 322 ELDKARRLFDRMHSRDVVAWSAMISGY-----TQSDRCREALAIFNEMQGTEVNPNDVTM 376

Query: 176 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR 235
            SVL  C+ L +L+ GK VH  + +  L       T L+  Y KCG ++DA K F  +  
Sbjct: 377 VSVLSACAVLGALETGKWVHSYIRRKDLPLTVILGTALVDFYAKCGCIKDAVKAFESMPV 436

Query: 236 KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQY 295
           ++  TW A+I G A +G+  +AL LF  M +  ++P  +TF+ +LLAC+H  LV+ G ++
Sbjct: 437 RNTWTWTALIKGMASNGRSREALELFSSMLEANIEPTDVTFIGVLLACSHGCLVEEGRRH 496

Query: 296 FDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHK 355
           F SM  DYGI  + +HY CMVDLLGRAG + EA   I+ MP +P   ++  LLSAC VHK
Sbjct: 497 FTSMTQDYGICPRIEHYGCMVDLLGRAGLIDEAYQFIRNMPIEPNAVVWRALLSACTVHK 556

Query: 356 RLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSW 415
            +++ E A   +  L+P + +G Y+ L+N YA++ +W + A +R  MKE  V K+PG S 
Sbjct: 557 NVEIGEEALKQIVPLDPCH-SGNYILLSNTYASVGQWKNAAMVRKEMKEKGVEKIPGCSL 615

Query: 416 IEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLL 475
           IE+   + EF + D  HP+L  I+EK+ E+ + +K+ GY+P+   A   V E  K+  + 
Sbjct: 616 IELEGTIFEFFAEDSEHPQLTEIYEKVHEMIENIKMVGYIPNTADARLDVDEYEKQVSVS 675

Query: 476 FHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFK 535
            HSEKLAIAFGL+K   G  IR+ KNLRVC DCH ATK IS +  REIIVRD  RFHHFK
Sbjct: 676 HHSEKLAIAFGLMKSRPGATIRLSKNLRVCIDCHSATKLISKVYNREIIVRDRNRFHHFK 735

Query: 536 DGTCSCGDYW 545
           DG CSC DYW
Sbjct: 736 DGLCSCNDYW 745



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 84/282 (29%), Positives = 143/282 (50%), Gaps = 11/282 (3%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI 164
           +++I  Y  CG +  A  LF    VK V+AW AMI+GY+K G     W E  +++ + M+
Sbjct: 210 NSLIHMYASCGDVVAAHVLFHTVQVKGVIAWNAMIAGYVKNG----DWKE-VVEMFKGML 264

Query: 165 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 224
            +    +  +L SV   C  L    LG+ + +   +  + +     T L+ MY KCG+L+
Sbjct: 265 EVRAPFDEVTLLSVATACGRLGDANLGQWIAEYAEEKGMLRSRNLATALVDMYAKCGELD 324

Query: 225 DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 284
            A +LF  +  +DVV W+AMISGY Q  +  +AL +F++M+   + P+ +T V++L AC 
Sbjct: 325 KARRLFDRMHSRDVVAWSAMISGYTQSDRCREALAIFNEMQGTEVNPNDVTMVSVLSACA 384

Query: 285 HAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQ---P 341
             G ++ G ++  S +    +       T +VD   + G + +AV   + MP +      
Sbjct: 385 VLGALETG-KWVHSYIRRKDLPLTVILGTALVDFYAKCGCIKDAVKAFESMPVRNTWTWT 443

Query: 342 AIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLA 383
           A+   + S  R  + L+L  F++M   N+ P +     V LA
Sbjct: 444 ALIKGMASNGRSREALEL--FSSMLEANIEPTDVTFIGVLLA 483



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 63/224 (28%), Positives = 112/224 (50%), Gaps = 9/224 (4%)

Query: 115 GQLDKAVELFKVAP--VKSVVAWTAMISGYMKFGYVENSWAEDGLKL-LRMMIGLGIRPN 171
             L  A+ LF++ P   +S  ++  +I  +++ G+      ED L L + M+    + P+
Sbjct: 116 AHLSYAIRLFRLGPHPPRSARSYNILIRSFLRAGH-----PEDALHLFVEMLDDTAVSPD 170

Query: 172 ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFL 231
             ++++ +  CS +  L +G+ V    FK     D   L  LI MY  CGD+  A  LF 
Sbjct: 171 QHTVANTVKSCSRMCDLSVGRGVQAYAFKRGFMVDQFVLNSLIHMYASCGDVVAAHVLFH 230

Query: 232 EIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDL 291
            +Q K V+ WNAMI+GY ++G  ++ + +F  M +     D +T +++  AC   G  +L
Sbjct: 231 TVQVKGVIAWNAMIAGYVKNGDWKEVVEMFKGMLEVRAPFDEVTLLSVATACGRLGDANL 290

Query: 292 GIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335
           G Q+      + G+    +  T +VD+  + G+L +A  L  +M
Sbjct: 291 G-QWIAEYAEEKGMLRSRNLATALVDMYAKCGELDKARRLFDRM 333


>gi|224124386|ref|XP_002330010.1| predicted protein [Populus trichocarpa]
 gi|222871435|gb|EEF08566.1| predicted protein [Populus trichocarpa]
          Length = 677

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 211/495 (42%), Positives = 295/495 (59%), Gaps = 13/495 (2%)

Query: 57  AAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM------PEKNSVSWSAMISG 110
           AA      +P +D  SWN+M++G+ Q      A  L   M      P+  ++        
Sbjct: 190 AARRVLDEMPGRDMVSWNSMVAGYAQNGRFNDALKLCREMEDLKLKPDAGTMGSLLPAVT 249

Query: 111 YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRP 170
              C  +    ++F     KS+++W  MI+ Y     V N+   + + L   M   G+ P
Sbjct: 250 NTSCDNVLYVKDMFVKLKEKSLISWNVMIAVY-----VNNAMPNEAVDLYLQMQVHGVEP 304

Query: 171 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 230
           +A S+SSVL  C  LS+  LG+++H+ V +  L  +      LI MY KCG L++A  +F
Sbjct: 305 DAVSISSVLPACGDLSAAVLGRRIHEYVERKKLRPNLLLENALIDMYAKCGCLKEARAVF 364

Query: 231 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVD 290
            ++  +DVV+W +MIS Y   G+G+ A+ LF KM+D G  PD I FV++L AC+HAGLVD
Sbjct: 365 DQMMFRDVVSWTSMISAYGMSGQGKDAVALFKKMRDSGFTPDWIAFVSVLAACSHAGLVD 424

Query: 291 LGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSA 350
            G   F+ M  +YGI    +HY CMVDLLGRAGK+ EA  L ++MP +P   ++G+LLSA
Sbjct: 425 EGRYCFNLMA-EYGITPGIEHYNCMVDLLGRAGKIDEAYHLTRQMPMEPNERVWGSLLSA 483

Query: 351 CRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKM 410
           CRV+  +++A  AA +LF L P  + G YV L+NIYA   +W DV  +R  M    + K+
Sbjct: 484 CRVYSSMNIALLAADHLFQLAPEQS-GYYVLLSNIYAKAGRWQDVETVRSIMNSKGIKKI 542

Query: 411 PGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVK 470
           PG S +E+   V+ F +GD+ H +   I++ L  L  RMK  GY+P+ + ALH V EE K
Sbjct: 543 PGNSNVEINDHVYTFLAGDQSHTQSKEIYKALGVLVGRMKELGYMPETDSALHDVEEEDK 602

Query: 471 EQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTR 530
           E  L  HSEKLAI F ++    G+ IR+ KN+RVCGDCH ATK IS I +REII+RDT R
Sbjct: 603 ECHLAVHSEKLAIVFAILNTKPGSTIRITKNIRVCGDCHVATKLISKIAEREIIIRDTHR 662

Query: 531 FHHFKDGTCSCGDYW 545
           FHHF+DG CSCGDYW
Sbjct: 663 FHHFRDGVCSCGDYW 677



 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 59/176 (33%), Positives = 93/176 (52%), Gaps = 5/176 (2%)

Query: 107 MISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGL 166
           ++  Y  CG+      +F     K+VV +  MI  Y     V N   +D L + + M   
Sbjct: 77  LMRAYAACGEPCYTRHIFDEITDKNVVFFNVMIRSY-----VNNGLYQDALLVFKTMANQ 131

Query: 167 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 226
           G  P+  +   VL  CS   +L +G Q+H  V K  L  +      L+SMY KC  L+ A
Sbjct: 132 GFYPDNYTYPCVLKACSVSGNLWVGLQIHGAVVKLGLDMNLYIGNGLVSMYGKCKWLDAA 191

Query: 227 CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA 282
            ++  E+  +D+V+WN+M++GYAQ+G+   AL+L  +M+D  +KPD+ T  +LL A
Sbjct: 192 RRVLDEMPGRDMVSWNSMVAGYAQNGRFNDALKLCREMEDLKLKPDAGTMGSLLPA 247



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 91/369 (24%), Positives = 152/369 (41%), Gaps = 88/369 (23%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDA----QELFDKIPQPDVVSYNIMLSCILLNS-DDV 55
           M  +  V+WNS++AG+A Q G+  DA    +E+ D   +PD  +   +L  +   S D+V
Sbjct: 198 MPGRDMVSWNSMVAGYA-QNGRFNDALKLCREMEDLKLKPDAGTMGSLLPAVTNTSCDNV 256

Query: 56  VAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWS------ 105
           +   D F +L  K   SWN MI+ +V      +A DL+L M     E ++VS S      
Sbjct: 257 LYVKDMFVKLKEKSLISWNVMIAVYVNNAMPNEAVDLYLQMQVHGVEPDAVSISSVLPAC 316

Query: 106 -----------------------------AMISGYIECGQLDKAVELFKVAPVKSVVAWT 136
                                        A+I  Y +CG L +A  +F     + VV+WT
Sbjct: 317 GDLSAAVLGRRIHEYVERKKLRPNLLLENALIDMYAKCGCLKEARAVFDQMMFRDVVSWT 376

Query: 137 AMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQ 196
           +MIS Y   G       +D + L + M   G  P+  +  SVL  CSH   +  G+    
Sbjct: 377 SMISAYGMSGQ-----GKDAVALFKKMRDSGFTPDWIAFVSVLAACSHAGLVDEGRYCFN 431

Query: 197 LVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEK 256
           L+ +         +TP I  Y                        N M+    + GK ++
Sbjct: 432 LMAE-------YGITPGIEHY------------------------NCMVDLLGRAGKIDE 460

Query: 257 ALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAA-KPDHYTCM 315
           A  L  +M    M+P+   + +LL AC     +++ +   D +   + +A  +  +Y  +
Sbjct: 461 AYHLTRQMP---MEPNERVWGSLLSACRVYSSMNIALLAADHL---FQLAPEQSGYYVLL 514

Query: 316 VDLLGRAGK 324
            ++  +AG+
Sbjct: 515 SNIYAKAGR 523


>gi|225425100|ref|XP_002272744.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 622

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 214/549 (38%), Positives = 324/549 (59%), Gaps = 16/549 (2%)

Query: 5   TTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQR 64
            T  WN+++ G++  + + ++A  L+  +    V  +N      LL +   ++A +  Q+
Sbjct: 82  NTFMWNTMIRGYSNSK-EPEEALLLYHHMLYHSV-PHNAYTFPFLLKACSSMSALEETQQ 139

Query: 65  LPI--------KDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQ 116
           +           +  + N++++ + +  ++  AR LF  + ++++VSW++MI GY +CG+
Sbjct: 140 IHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGE 199

Query: 117 LDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLS 176
           ++ A E+F   P +++++WT+MISG +  G       ++ L L   M   GI+ +  +L 
Sbjct: 200 IEMAYEIFNHMPERNIISWTSMISGCVGAGK-----PKEALNLFHRMQTAGIKLDNVALV 254

Query: 177 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK 236
           S L  C+ L  L  GK +H  + K  +  D      LI MY KCGDLE+A ++F +++ K
Sbjct: 255 STLQACADLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEK 314

Query: 237 DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYF 296
            V  W AMISGYA HG+G +AL  F KM+  G++P+ +TF  +L AC+HAGLV      F
Sbjct: 315 GVSVWTAMISGYAIHGRGREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLF 374

Query: 297 DSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKR 356
           +SM   +G     +HY CMVDLLGRAG L EA +LI+ MP KP  AI+G LL+AC +H  
Sbjct: 375 ESMERIHGFKPSIEHYGCMVDLLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIHGN 434

Query: 357 LDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWI 416
           L+L +     L  ++P +  G Y+ LA+I+AA  +W+  AR+R  MKE  V K+PG S I
Sbjct: 435 LELGKQIGKILIQVDPGH-GGRYIHLASIHAAAGEWNQAARVRRQMKEQGVSKLPGCSVI 493

Query: 417 EVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLF 476
            V    HEF +GD  HP++  I   L+++ +R++  GY P L   L  + ++ KE  +  
Sbjct: 494 SVNGTAHEFLAGDESHPQIKEIDHMLEQIVERLREEGYKPKLGDLLLDLEDKEKETAIHH 553

Query: 477 HSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKD 536
           HSEKLA+ FGLI    G  IR+ KNLRVC DCH   K IS +  REI++RD TRFH FKD
Sbjct: 554 HSEKLAVTFGLISTKPGMTIRIVKNLRVCEDCHTVIKLISKVYAREILMRDRTRFHLFKD 613

Query: 537 GTCSCGDYW 545
           G C+CGDYW
Sbjct: 614 GNCTCGDYW 622



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 51/204 (25%), Positives = 88/204 (43%), Gaps = 37/204 (18%)

Query: 166 LGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYC---KCGD 222
           L    NA+    +L  CS++  L   +Q+H  + K+ L  D    + L++ +C     G 
Sbjct: 12  LSSESNAAQTLHLLQRCSNMEEL---RQIHGQMLKTGLILDEIPASKLLA-FCASPNSGS 67

Query: 223 LEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA 282
           L  A  +F  I R +   WN MI GY+   + E+AL L+  M    +  ++ TF  LL A
Sbjct: 68  LAYARTVFDRIFRPNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKA 127

Query: 283 CN-----------HAGLVDLG----IQYFDSMVNDYGIAA----------KPDH-----Y 312
           C+           HA ++ +G    I   +S++N Y  +           + D      +
Sbjct: 128 CSSMSALEETQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSW 187

Query: 313 TCMVDLLGRAGKLVEAVDLIKKMP 336
             M+D   + G++  A ++   MP
Sbjct: 188 NSMIDGYTKCGEIEMAYEIFNHMP 211


>gi|297849508|ref|XP_002892635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338477|gb|EFH68894.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 809

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 216/549 (39%), Positives = 317/549 (57%), Gaps = 16/549 (2%)

Query: 5   TTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQR 64
           + VN  + L     + G LK A+ LFD + + +VVS+N M+   + N ++   A   FQ+
Sbjct: 269 SLVNIATALVDMYAKCGSLKTARLLFDGMLERNVVSWNSMIDAYVQN-ENPKEAMVIFQK 327

Query: 65  LPIKDTASWNTMISGFVQK----KNMAKARDLFLAMPE----KNSVSWSAMISGYIECGQ 116
           +  +     +  + G +       ++ + R +     E    +N    +++IS Y +C +
Sbjct: 328 MLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELELDRNVSVVNSLISMYCKCKE 387

Query: 117 LDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLS 176
           +D A  +F     +++V+W AMI      G+ +N    + L     M    ++P+  +  
Sbjct: 388 VDTAASMFGKLQSRTIVSWNAMI-----LGFAQNGRPIEALNYFSQMQARTVKPDTFTYV 442

Query: 177 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK 236
           SV+   + LS     K +H +V ++ L K+    T L+ MY KCG +  A  +F  +  +
Sbjct: 443 SVITAIAELSITHHAKWIHGVVMRNCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSER 502

Query: 237 DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYF 296
            V TWNAMI GY  HG G+ AL LF++M+   ++P+ +TF++++ AC+H+GLV+ G++ F
Sbjct: 503 HVTTWNAMIDGYGTHGIGKAALELFEEMQKGTIRPNGVTFLSVISACSHSGLVEAGLKCF 562

Query: 297 DSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKR 356
             M  +Y I    DHY  MVDLLGRAG+L EA D I +MP KP   ++G +L AC++HK 
Sbjct: 563 HMMKENYSIEPSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQIHKN 622

Query: 357 LDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWI 416
           ++ AE  A  LF LNP +  G +V LANIY A   W+ V ++R+SM    + K PG S +
Sbjct: 623 VNFAEKVAERLFELNPED-GGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPGCSMV 681

Query: 417 EVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLF 476
           E+   VH F SG   HP    I+  L++L  ++K AGYVPD    L  + ++VKEQLL  
Sbjct: 682 EIKNEVHSFFSGSTAHPSSKKIYAFLEKLICQIKEAGYVPDTNLIL-GLEDDVKEQLLSS 740

Query: 477 HSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKD 536
           HSEKLAI+FGL+    GT I V KNLRVC DCH ATKYIS +  REIIVRD  RFHHFK+
Sbjct: 741 HSEKLAISFGLLNTTAGTTIHVRKNLRVCADCHNATKYISLVTGREIIVRDMQRFHHFKN 800

Query: 537 GTCSCGDYW 545
           G CSCGDYW
Sbjct: 801 GACSCGDYW 809



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 56/182 (30%), Positives = 102/182 (56%), Gaps = 5/182 (2%)

Query: 111 YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRP 170
           Y +C Q+ +A ++F   P + +V+W  +++GY      +N  A   L+++ +M    ++P
Sbjct: 180 YAKCRQVHEARKVFDRMPERDLVSWNTIVAGY-----SQNGMARMALEMVNLMCEENLKP 234

Query: 171 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 230
           +  ++ SVL   S L  +++GK++H    ++         T L+ MY KCG L+ A  LF
Sbjct: 235 SFITIVSVLPAVSALRLIRIGKEIHGYAMRAGFDSLVNIATALVDMYAKCGSLKTARLLF 294

Query: 231 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVD 290
             +  ++VV+WN+MI  Y Q+   ++A+ +F KM DEG+KP  ++ +  L AC   G ++
Sbjct: 295 DGMLERNVVSWNSMIDAYVQNENPKEAMVIFQKMLDEGVKPTDVSVMGALHACADLGDLE 354

Query: 291 LG 292
            G
Sbjct: 355 RG 356



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 68/275 (24%), Positives = 114/275 (41%), Gaps = 44/275 (16%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIP----QPDVVSYNIMLSCILLNSDDVVAAF 59
           +T V+WN+++ GFA Q G+  +A   F ++     +PD  +Y  +++ I           
Sbjct: 401 RTIVSWNAMILGFA-QNGRPIEALNYFSQMQARTVKPDTFTYVSVITAI----------- 448

Query: 60  DFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDK 119
                L I   A W   I G V +  +           +KN    +A++  Y +CG +  
Sbjct: 449 ---AELSITHHAKW---IHGVVMRNCL-----------DKNVFVTTALVDMYAKCGAIMI 491

Query: 120 AVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVL 179
           A  +F +   + V  W AMI GY   G       +  L+L   M    IRPN  +  SV+
Sbjct: 492 ARLIFDMMSERHVTTWNAMIDGYGTHGI-----GKAALELFEEMQKGTIRPNGVTFLSVI 546

Query: 180 LGCSHLSSLQLG-KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDV 238
             CSH   ++ G K  H +     +         ++ +  + G L +A    +++  K  
Sbjct: 547 SACSHSGLVEAGLKCFHMMKENYSIEPSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPA 606

Query: 239 VT-WNAMISGYAQHGK---GEK-ALRLFDKMKDEG 268
           V  + AM+     H      EK A RLF+   ++G
Sbjct: 607 VNVYGAMLGACQIHKNVNFAEKVAERLFELNPEDG 641



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 80/151 (52%), Gaps = 1/151 (0%)

Query: 186 SSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMI 245
           SSL+  + +  L+FK+ L ++    T L+S++C+ G +++A ++F  I +K  V +  M+
Sbjct: 48  SSLKELRHILPLIFKNGLYQEHLFQTKLVSLFCRYGSVDEAARVFEPIDKKLNVLYYTML 107

Query: 246 SGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGI 305
            G+A+    +KAL+ F +M+D+ ++P    F  LL  C     + +G +    +V   G 
Sbjct: 108 KGFAKVSDLDKALKFFVRMRDDEVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKS-GF 166

Query: 306 AAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 336
           +      T + ++  +  ++ EA  +  +MP
Sbjct: 167 SLDLFAMTGLENMYAKCRQVHEARKVFDRMP 197


>gi|225447376|ref|XP_002274886.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 736

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 217/545 (39%), Positives = 316/545 (57%), Gaps = 17/545 (3%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVA--AFDFFQRLPI 67
           NS+LA +AK  G +  A+ +FD++ + D+ S+N M+S    N+D   A   FD   +  +
Sbjct: 200 NSLLAMYAK-FGDMGTARMVFDRMAERDLTSWNTMISGYAKNADSGTAFLVFDLMGKAGL 258

Query: 68  -KDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVS------WSAMISGYIECGQLDKA 120
             D  +   ++S     K + + + +      +NS+        +++I  Y  C  +  A
Sbjct: 259 FADCTTLLGLLSACADLKAVKEGK-VIHGYAVRNSIGNYNKFFTNSLIEMYCNCNCMVDA 317

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLL 180
             LF+    K  V+W +MI      GY  N  A + L+L R M   G  P+  +  +VL 
Sbjct: 318 RRLFERVRWKDTVSWNSMI-----LGYARNGDAFESLRLFRRMALDGSGPDQVTFIAVLG 372

Query: 181 GCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVT 240
            C  +++L+ G  +H  + K     +T   T L+ MY KCG L  + ++F E+  K +V+
Sbjct: 373 ACDQIAALRYGMSIHSYLVKKGFDANTIVGTALVDMYSKCGSLACSRRVFDEMPDKSLVS 432

Query: 241 WNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV 300
           W+AM++GY  HG+G +A+ + D MK   + PD+  F ++L AC+HAGLV  G + F  M 
Sbjct: 433 WSAMVAGYGLHGRGREAISILDGMKANSVIPDNGVFTSILSACSHAGLVVEGKEIFYKME 492

Query: 301 NDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLA 360
            +Y +     HY+CMVDLLGRAG L EA  +I+ M  KP   I+  LL+A R+HK + LA
Sbjct: 493 KEYNVKPALSHYSCMVDLLGRAGHLDEAYVIIRTMEIKPTSDIWAALLTASRLHKNIKLA 552

Query: 361 EFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGT 420
           E +A  +F++NP      Y+ L+NIYAA K+WDDV R+R  ++   + K PG S+IE+  
Sbjct: 553 EISAQKVFDMNP-KVVSSYICLSNIYAAEKRWDDVERVRAMVRRKGLKKSPGCSFIELDN 611

Query: 421 VVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEK 480
           +VH F  GD+ H +   I+ KL EL++++K AGY PD     + V EEVKE++L  HSE+
Sbjct: 612 MVHRFLVGDKSHQQTEDIYAKLNELKQQLKEAGYKPDTSLVFYDVEEEVKEKMLWDHSER 671

Query: 481 LAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCS 540
           LAIAF LI    GT IR+ KNLRVCGDCH  TK IS +  REII+RD  RFHHF  G CS
Sbjct: 672 LAIAFALINTGPGTVIRITKNLRVCGDCHTVTKLISELTGREIIMRDIHRFHHFIKGFCS 731

Query: 541 CGDYW 545
           CGDYW
Sbjct: 732 CGDYW 736



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 95/427 (22%), Positives = 170/427 (39%), Gaps = 50/427 (11%)

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLF-----LAMPEKNSVSWSAMISGYIECGQ 116
            Q+ P+  +     ++  F   K+  + + L       ++ E N+   + + + Y  CG 
Sbjct: 52  LQQYPLT-SLQCGALLQSFTNTKSFKQGQQLHAHMISFSILENNTYLNTKLAAFYAGCGL 110

Query: 117 LDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLS 176
           + +A  +F    +K+   W  MI GY       N      L L R M+  G R +  +  
Sbjct: 111 MSQAEVIFDGIVLKNSFLWNFMIRGY-----ASNGLPMKSLVLYREMLCFGQRADNFTYP 165

Query: 177 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK 236
            VL  C  L  +++G++VH  V    L  D      L++MY K GD+  A  +F  +  +
Sbjct: 166 FVLKACGDLLLVEIGRRVHSEVVVCGLESDIYVGNSLLAMYAKFGDMGTARMVFDRMAER 225

Query: 237 DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYF 296
           D+ +WN MISGYA++     A  +FD M   G+  D  T + LL AC     V  G    
Sbjct: 226 DLTSWNTMISGYAKNADSGTAFLVFDLMGKAGLFADCTTLLGLLSACADLKAVKEG---- 281

Query: 297 DSMVNDYGIAAKPDHY-----TCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSAC 351
             +++ Y +     +Y       ++++      +V+A  L +++ +K   +    +L   
Sbjct: 282 -KVIHGYAVRNSIGNYNKFFTNSLIEMYCNCNCMVDARRLFERVRWKDTVSWNSMILGYA 340

Query: 352 RVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMP 411
           R     +   F ++ LF     + +G         A +   D +A +R  M  ++ +   
Sbjct: 341 R-----NGDAFESLRLFRRMALDGSG--PDQVTFIAVLGACDQIAALRYGMSIHSYLVKK 393

Query: 412 GYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLE----------FA 461
           G            F +   V   LV ++ K   L    ++   +PD            + 
Sbjct: 394 G------------FDANTIVGTALVDMYSKCGSLACSRRVFDEMPDKSLVSWSAMVAGYG 441

Query: 462 LHAVGEE 468
           LH  G E
Sbjct: 442 LHGRGRE 448



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 72/142 (50%), Gaps = 18/142 (12%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKI----PQPDVVSYNIMLSCILLNSDDVVAAF 59
           K TV+WNS++ G+A+  G   ++  LF ++      PD V++       +L + D +AA 
Sbjct: 327 KDTVSWNSMILGYARN-GDAFESLRLFRRMALDGSGPDQVTF-----IAVLGACDQIAAL 380

Query: 60  DF---FQRLPIKDTASWNTMISG-----FVQKKNMAKARDLFLAMPEKNSVSWSAMISGY 111
            +        +K     NT++       + +  ++A +R +F  MP+K+ VSWSAM++GY
Sbjct: 381 RYGMSIHSYLVKKGFDANTIVGTALVDMYSKCGSLACSRRVFDEMPDKSLVSWSAMVAGY 440

Query: 112 IECGQLDKAVELFKVAPVKSVV 133
              G+  +A+ +       SV+
Sbjct: 441 GLHGRGREAISILDGMKANSVI 462


>gi|297740109|emb|CBI30291.3| unnamed protein product [Vitis vinifera]
          Length = 616

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 209/532 (39%), Positives = 309/532 (58%), Gaps = 49/532 (9%)

Query: 57  AAFD---FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKN------------- 100
           A FD    F+ +P KD  SW  MI G+ +     +A   F  M ++              
Sbjct: 91  AMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLG 150

Query: 101 ------------SVSWS--------------AMISGYIECGQLDKAVELFKV-APVKSVV 133
                       SV  S              A+   Y + G ++ A  +F + +  ++VV
Sbjct: 151 ACGALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVV 210

Query: 134 AWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ 193
           ++T +I GY     VE    E GL +   +   GI PN  + SS++  C++ ++L+ G Q
Sbjct: 211 SYTCLIDGY-----VETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQ 265

Query: 194 VHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGK 253
           +H  V K    +D    + L+ MY KCG LE A + F EI     + WN+++S + QHG 
Sbjct: 266 LHAQVMKINFDEDPFVSSILVDMYGKCGLLEQAIQAFDEIGDPTEIAWNSLVSVFGQHGL 325

Query: 254 GEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYT 313
           G+ A+++F++M D G+KP++ITF++LL  C+HAGLV+ G+ YF SM   YG+    +HY+
Sbjct: 326 GKDAIKIFERMVDRGVKPNAITFISLLTGCSHAGLVEEGLDYFYSMDKTYGVVPGEEHYS 385

Query: 314 CMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPA 373
           C++DLLGRAG+L EA + I +MPF+P    + + L ACR+H   ++ + AA  L  L P 
Sbjct: 386 CVIDLLGRAGRLKEAKEFINRMPFEPNAFGWCSFLGACRIHGDKEMGKLAAEKLVKLEPK 445

Query: 374 NAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHP 433
           N +G  V L+NIYA  ++W+DV  +R+ M++ NV K+PGYSW++VG   H F + D  HP
Sbjct: 446 N-SGALVLLSNIYANERQWEDVRSVRMRMRDGNVKKLPGYSWVDVGYKTHVFGAEDWSHP 504

Query: 434 ELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLG 493
              +I+EKL  L  ++K AGYVP  +     + + +KE+LL  HSE++A+AF LI +P+G
Sbjct: 505 RKSAIYEKLDTLLDQIKAAGYVPRTDSVPLDMDDSMKEKLLHRHSERIAVAFALISMPIG 564

Query: 494 TPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
            PI V KNLRVC DCH A K+IS +  R+IIVRD +RFHHF DG+CSCGDYW
Sbjct: 565 KPIIVKKNLRVCVDCHSAIKFISKVTGRKIIVRDNSRFHHFTDGSCSCGDYW 616



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 86/330 (26%), Positives = 144/330 (43%), Gaps = 47/330 (14%)

Query: 65  LPIKDTASWNTMISGFVQKKNMAKARDLFLAM------PEKNSVS--------------- 103
           +P ++  SW  MISG  Q    ++A   F  M      P + + S               
Sbjct: 1   MPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMG 60

Query: 104 ------------WSAMISG------YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKF 145
                        S +  G      Y +CG +  A ++F+  P K  V+WTAMI GY K 
Sbjct: 61  KQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKI 120

Query: 146 GYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCK 205
           G       E+ L   + MI   +  +   L S L  C  L + + G+ VH  V K     
Sbjct: 121 GEF-----EEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFES 175

Query: 206 DTTALTPLISMYCKCGDLEDACKLF-LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKM 264
           D      L  MY K GD+E A  +F ++ + ++VV++  +I GY +  + EK L +F ++
Sbjct: 176 DIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVEL 235

Query: 265 KDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGK 324
           + +G++P+  TF +L+ AC +   ++ G Q   + V        P   + +VD+ G+ G 
Sbjct: 236 RRQGIEPNEFTFSSLIKACANQAALEQGTQ-LHAQVMKINFDEDPFVSSILVDMYGKCGL 294

Query: 325 LVEAVDLIKKMPFKPQPAIFGTLLSACRVH 354
           L +A+    ++   P    + +L+S    H
Sbjct: 295 LEQAIQAFDEIG-DPTEIAWNSLVSVFGQH 323


>gi|413918675|gb|AFW58607.1| hypothetical protein ZEAMMB73_481408 [Zea mays]
          Length = 694

 Score =  397 bits (1019), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 219/543 (40%), Positives = 313/543 (57%), Gaps = 35/543 (6%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSD------------DVVAAFDFFQRLPIK 68
           G +  A+ +FD   +  VV +N +++  L N D            +V  AFD    + + 
Sbjct: 169 GDVAAARLVFDAAEESGVVMWNAIVAAYLKNGDWMEVVEMFKGMLEVGVAFDEVTLVSVV 228

Query: 69  DT------ASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVE 122
                   A     ++G V ++ +A+   L            +A++  Y +CG++ KA  
Sbjct: 229 TACGRIGDAKLGKWVAGHVDEEGLARNPKLV-----------TALMDMYAKCGEIGKARR 277

Query: 123 LFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGC 182
           LF     + VVAW+AMISGY      +     + L L   M    + PN  ++ SVL  C
Sbjct: 278 LFDGMQSRDVVAWSAMISGY-----TQADQCREALGLFSEMQLARVEPNDVTMVSVLSAC 332

Query: 183 SHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWN 242
           + L +L+ GK VH  V +  L   T   T L+  Y KCG ++DA + F  +  K+  TW 
Sbjct: 333 AVLGALETGKWVHSYVRRKRLSLTTILGTALVDFYAKCGCIDDAVEAFESMPVKNSWTWT 392

Query: 243 AMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVND 302
           A+I G A +G+G +AL LF  M++ G++P  +TF+ +L+AC+H+ LV+ G ++FDSM  D
Sbjct: 393 ALIKGMATNGRGREALELFSSMREAGIEPTDVTFIGVLMACSHSCLVEEGRRHFDSMARD 452

Query: 303 YGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEF 362
           YGI  + +HY CMVDLLGRAG + EA   I+ MP +P   I+  LLS+C VH+ + + E 
Sbjct: 453 YGIKPRVEHYGCMVDLLGRAGLVDEAYQFIRTMPIEPNAVIWRALLSSCAVHRNVGIGEE 512

Query: 363 AAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVV 422
           A   + +LNP++ +G YV L+NIYA+  +W D A +R  MK+  + K PG S IE+  VV
Sbjct: 513 ALKQIISLNPSH-SGDYVLLSNIYASAGQWKDAAMVRKEMKDRGIEKTPGCSLIELDGVV 571

Query: 423 HEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLA 482
            EF + D  HPEL  I++K++E+  R+K+AGYVP+       V E  KE  +  HSEKLA
Sbjct: 572 FEFFAEDSDHPELREIYQKVEEMIGRIKVAGYVPNTADVRLEVEEREKEVSVSHHSEKLA 631

Query: 483 IAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCG 542
           IAFGL+K+  G  IR+ KNLRVC DCH ATK IS +  REI+VRD   FHHFKDGTCSC 
Sbjct: 632 IAFGLMKLDPGATIRLSKNLRVCADCHSATKLISKVYDREIVVRDRNIFHHFKDGTCSCN 691

Query: 543 DYW 545
           DYW
Sbjct: 692 DYW 694



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 68/261 (26%), Positives = 121/261 (46%), Gaps = 11/261 (4%)

Query: 117 LDKAVELFKVAPVK--SVVAWTAMISGYMKFGYVENSWAEDGLKL-LRMMIGLGIRP-NA 172
           L  AV LF++ P    S   +  ++  ++  G+      ED L L + M+      P + 
Sbjct: 66  LPYAVSLFRLGPRPPLSTPCYNVLMRAFLHAGH-----PEDALHLFIEMLHAASACPADQ 120

Query: 173 SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLE 232
            + +  L  CS + +L +G+ V     K  L  D   L+ LI MY  CGD+  A  +F  
Sbjct: 121 HTAACALKSCSRMCALDVGRGVQAYAVKRGLVADRFVLSSLIHMYASCGDVAAARLVFDA 180

Query: 233 IQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 292
            +   VV WNA+++ Y ++G   + + +F  M + G+  D +T V+++ AC   G   LG
Sbjct: 181 AEESGVVMWNAIVAAYLKNGDWMEVVEMFKGMLEVGVAFDEVTLVSVVTACGRIGDAKLG 240

Query: 293 IQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACR 352
            ++    V++ G+A  P   T ++D+  + G++ +A  L   M  +   A    +    +
Sbjct: 241 -KWVAGHVDEEGLARNPKLVTALMDMYAKCGEIGKARRLFDGMQSRDVVAWSAMISGYTQ 299

Query: 353 VHK-RLDLAEFAAMNLFNLNP 372
             + R  L  F+ M L  + P
Sbjct: 300 ADQCREALGLFSEMQLARVEP 320


>gi|224133790|ref|XP_002327681.1| predicted protein [Populus trichocarpa]
 gi|222836766|gb|EEE75159.1| predicted protein [Populus trichocarpa]
          Length = 654

 Score =  397 bits (1019), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 198/481 (41%), Positives = 293/481 (60%), Gaps = 9/481 (1%)

Query: 68  KDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVA 127
           +D    N+MI  +++   +   R +F  MP ++ +SW+ +IS Y++ G ++ A ELF   
Sbjct: 180 EDLHVGNSMIDMYIKCGFLECGRKVFDEMPNRDVISWTELISAYVKSGNMESAGELFDGL 239

Query: 128 PVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSS 187
           PVK +VAWT M+SG+      +N+   + +     M   G+  +  +L  V+  C+ L +
Sbjct: 240 PVKDMVAWTVMVSGF-----AQNAKPREAIMFFEKMQEFGVETDEITLIGVISACAQLGA 294

Query: 188 LQLGKQVHQLVFKSPLCKDTTAL--TPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMI 245
            +    +  +  KS      + +  + LI MY KCG + DA ++F  ++ ++V ++++MI
Sbjct: 295 AKYADWIRDVAEKSEFGGKHSVVVGSALIDMYSKCGSVGDAYRVFQGMKERNVYSYSSMI 354

Query: 246 SGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGI 305
            G+A HG+   A++LFD+M    +KP+ +TF+ +L AC+HAG+V+ G Q F+ M   YGI
Sbjct: 355 LGFAMHGRVHDAMKLFDEMVKTEIKPNRVTFIGVLTACSHAGMVEQGWQIFELMEKCYGI 414

Query: 306 AAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAM 365
               DHYTCMVDLLGRAG+L EA +L+K MP +P   ++G LL ACR+HK  D+A  AA 
Sbjct: 415 KPSADHYTCMVDLLGRAGRLQEAHELVKTMPIEPHGGVWGALLGACRIHKSPDIAAIAAN 474

Query: 366 NLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGT-VVHE 424
           +LF L P    G Y+ LANIYA+  +W+DV+ +R  M+   + K P +SWIE    +VHE
Sbjct: 475 HLFELEPY-CIGNYILLANIYASCGRWNDVSTVRKLMRTRGLRKNPAFSWIESEKGMVHE 533

Query: 425 FRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIA 484
           F SGD  HP    I + L++L  R++  GY P L    + V +E K ++L+ HSEKLA+A
Sbjct: 534 FFSGDMTHPRSGEIKQALEDLLDRLEAKGYQPHLSSVSYDVNDEDKRRILMTHSEKLALA 593

Query: 485 FGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDY 544
           FGLI    G+ IR+ KNLR+C DCH      S I  REIIVRD  RFHHF DG CSCG++
Sbjct: 594 FGLISTIPGSKIRIVKNLRICEDCHSVICGASQITGREIIVRDIMRFHHFHDGICSCGNF 653

Query: 545 W 545
           W
Sbjct: 654 W 654



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 65/251 (25%), Positives = 114/251 (45%), Gaps = 48/251 (19%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G L+  +++FD++P  DV+S+  ++S   + S ++ +A + F  LP+KD  +W  M+SGF
Sbjct: 196 GFLECGRKVFDEMPNRDVISWTELISA-YVKSGNMESAGELFDGLPVKDMVAWTVMVSGF 254

Query: 81  VQKKNMAKARDLFLAMPE----------------------------------------KN 100
            Q     +A   F  M E                                        K+
Sbjct: 255 AQNAKPREAIMFFEKMQEFGVETDEITLIGVISACAQLGAAKYADWIRDVAEKSEFGGKH 314

Query: 101 S-VSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKL 159
           S V  SA+I  Y +CG +  A  +F+    ++V ++++MI G+   G V      D +KL
Sbjct: 315 SVVVGSALIDMYSKCGSVGDAYRVFQGMKERNVYSYSSMILGFAMHGRV-----HDAMKL 369

Query: 160 LRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTT-ALTPLISMYC 218
              M+   I+PN  +   VL  CSH   ++ G Q+ +L+ K    K +    T ++ +  
Sbjct: 370 FDEMVKTEIKPNRVTFIGVLTACSHAGMVEQGWQIFELMEKCYGIKPSADHYTCMVDLLG 429

Query: 219 KCGDLEDACKL 229
           + G L++A +L
Sbjct: 430 RAGRLQEAHEL 440



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 85/185 (45%), Gaps = 37/185 (20%)

Query: 135 WTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQV 194
           + A+I GY+    +E    E   +   +M   G+ P + + +++   C     + LG+Q+
Sbjct: 114 YNALIRGYL----IEERLKES-TEFYSLMRKEGVVPVSFTFTALFKACGAKMDVGLGRQI 168

Query: 195 H--------------------------------QLVFKSPLCKDTTALTPLISMYCKCGD 222
           H                                + VF     +D  + T LIS Y K G+
Sbjct: 169 HGQTILVGGFGEDLHVGNSMIDMYIKCGFLECGRKVFDEMPNRDVISWTELISAYVKSGN 228

Query: 223 LEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA 282
           +E A +LF  +  KD+V W  M+SG+AQ+ K  +A+  F+KM++ G++ D IT + ++ A
Sbjct: 229 MESAGELFDGLPVKDMVAWTVMVSGFAQNAKPREAIMFFEKMQEFGVETDEITLIGVISA 288

Query: 283 CNHAG 287
           C   G
Sbjct: 289 CAQLG 293



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 70/166 (42%), Gaps = 5/166 (3%)

Query: 173 SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL--F 230
           S + + L GC +L+ +   KQVH  +  + L +    L  LI    K     D   L  F
Sbjct: 47  SQIVTTLDGCKNLTQI---KQVHARILLNGLDQSCYVLAKLIRTLTKLNIPVDPYPLSIF 103

Query: 231 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVD 290
            ++   +   +NA+I GY    + +++   +  M+ EG+ P S TF AL  AC     V 
Sbjct: 104 NQVNYPNPFLYNALIRGYLIEERLKESTEFYSLMRKEGVVPVSFTFTALFKACGAKMDVG 163

Query: 291 LGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 336
           LG Q     +   G          M+D+  + G L     +  +MP
Sbjct: 164 LGRQIHGQTILVGGFGEDLHVGNSMIDMYIKCGFLECGRKVFDEMP 209


>gi|359489486|ref|XP_002269573.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Vitis vinifera]
          Length = 786

 Score =  397 bits (1019), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 214/542 (39%), Positives = 316/542 (58%), Gaps = 41/542 (7%)

Query: 11  SVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIML-SCILLN-SDDVVAAFDFFQRLPIK 68
           S L     + G L +A+ + + +   D VS+N M+  C+     ++ ++ F       +K
Sbjct: 279 SALVDMYSKCGDLSNARRMLETMEVDDPVSWNSMIVGCVRQGLGEEALSLFRIMHLRHMK 338

Query: 69  -DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSW----SAMISGYIECGQLDKAVEL 123
            D  ++ ++++ F    +M  A  +   + +    ++    +A++  Y + G  D A ++
Sbjct: 339 IDEFTYPSVLNCFSFVMDMRNAMSVHSLIVKTGFEAYKLVNNALVDMYAKRGYFDYAFDV 398

Query: 124 FKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCS 183
           F+    K V++WT++++G      V N   E+ L+L   M  +GI P+   +++VL  C+
Sbjct: 399 FEKMTDKDVISWTSLVTGC-----VHNGSYEEALRLFCEMRIMGIHPDQIVIAAVLSACA 453

Query: 184 HLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNA 243
            L+ L+ GKQVH    KS L    +    L+SMY KCG +EDA K+F  ++ +DV+TW A
Sbjct: 454 ELTVLEFGKQVHANFLKSGLGSSLSVDNSLVSMYAKCGCIEDANKVFDSMEIQDVITWTA 513

Query: 244 MISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDY 303
           +I GYAQ+G+G                             +HAGLV+ G  YF SM   Y
Sbjct: 514 LIVGYAQNGRGR----------------------------DHAGLVEHGRSYFQSMEEVY 545

Query: 304 GIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFA 363
           GI   P+HY CM+DLLGR+GKL+EA +L+ +M  +P   ++  LL+ACRVH  ++L E A
Sbjct: 546 GIKPGPEHYACMIDLLGRSGKLMEAKELLNQMAVQPDATVWKALLAACRVHGNVELGERA 605

Query: 364 AMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVH 423
           A NLF L P NA   YV L+N+Y+A  KW++ A+ R  MK   V K PG SWIE+ + VH
Sbjct: 606 ANNLFELEPKNAVP-YVLLSNLYSAAGKWEEAAKTRRLMKLRGVSKEPGCSWIEMSSKVH 664

Query: 424 EFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAI 483
            F S DR HP    I+ K+ E+   +K AGYVPD+ FALH + EE KE  L +HSEKLA+
Sbjct: 665 RFMSEDRSHPRTAEIYSKVDEIMILIKEAGYVPDMNFALHDMDEEGKELGLAYHSEKLAV 724

Query: 484 AFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGD 543
           AFGL+ +P G PIR+FKNLR+CGDCH A KY+S +  R +I+RD+  FHHF++G CSC D
Sbjct: 725 AFGLLTMPPGAPIRIFKNLRICGDCHTAMKYVSGVFHRHVILRDSNCFHHFREGACSCSD 784

Query: 544 YW 545
           YW
Sbjct: 785 YW 786



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 93/305 (30%), Positives = 156/305 (51%), Gaps = 12/305 (3%)

Query: 67  IKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKV 126
           +  ++  N ++S   +   +  AR LF  MP+++  SW+ MI  Y   G+L++A +LF  
Sbjct: 38  VHSSSDSNWVLSNLSKCGRVDDARKLFDVMPDRDECSWNTMIGAYANSGRLNEARKLFYE 97

Query: 127 APVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLS 186
            P++S + W+++ISGY ++G        + L+L   M   G RPN  +  SVL  CS   
Sbjct: 98  TPIRSCITWSSLISGYCRYG-----CDVEALELFWEMQYEGERPNQFTWGSVLRVCSMYV 152

Query: 187 SLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF-LEIQRKDVVTWNAMI 245
            L+ GKQ+H    K+    +   +T L+ MY KC  + +A  LF L   +++ V W AM+
Sbjct: 153 LLEKGKQIHAHAIKTQFDSNAFVVTGLVDMYAKCKCILEAEYLFELAPDKRNHVLWTAMV 212

Query: 246 SGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGI 305
           +GY+Q+G G KA+  F  M+ EG++ +  TF ++L AC        G Q    +V   G 
Sbjct: 213 TGYSQNGDGHKAIECFRDMRGEGIECNQFTFPSILTACGSISACGFGAQVHGCIVRS-GF 271

Query: 306 AAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAM 365
            A     + +VD+  + G L  A  +++ M     P  + +++  C    R  L E  A+
Sbjct: 272 GANVFVGSALVDMYSKCGDLSNARRMLETMEVD-DPVSWNSMIVGC---VRQGLGE-EAL 326

Query: 366 NLFNL 370
           +LF +
Sbjct: 327 SLFRI 331



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 120/480 (25%), Positives = 203/480 (42%), Gaps = 80/480 (16%)

Query: 2   NVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDF 61
            V ++ + N VL+  +K  G++ DA++LFD +P  D  S+N M+     NS  +  A   
Sbjct: 37  TVHSSSDSNWVLSNLSKC-GRVDDARKLFDVMPDRDECSWNTMIG-AYANSGRLNEARKL 94

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM----PEKNSVSW------------- 104
           F   PI+   +W+++ISG+ +     +A +LF  M       N  +W             
Sbjct: 95  FYETPIRSCITWSSLISGYCRYGCDVEALELFWEMQYEGERPNQFTWGSVLRVCSMYVLL 154

Query: 105 ----------------------SAMISGYIECGQLDKAVELFKVAPVK-SVVAWTAMISG 141
                                 + ++  Y +C  + +A  LF++AP K + V WTAM++G
Sbjct: 155 EKGKQIHAHAIKTQFDSNAFVVTGLVDMYAKCKCILEAEYLFELAPDKRNHVLWTAMVTG 214

Query: 142 YMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKS 201
           Y      +N      ++  R M G GI  N  +  S+L  C  +S+   G QVH  + +S
Sbjct: 215 Y-----SQNGDGHKAIECFRDMRGEGIECNQFTFPSILTACGSISACGFGAQVHGCIVRS 269

Query: 202 PLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLF 261
               +    + L+ MY KCGDL +A ++   ++  D V+WN+MI G  + G GE+AL LF
Sbjct: 270 GFGANVFVGSALVDMYSKCGDLSNARRMLETMEVDDPVSWNSMIVGCVRQGLGEEALSLF 329

Query: 262 DKMKDEGMKPDSITFVALLLACN-----------HAGLVDLGIQ---------------- 294
             M    MK D  T+ ++L   +           H+ +V  G +                
Sbjct: 330 RIMHLRHMKIDEFTYPSVLNCFSFVMDMRNAMSVHSLIVKTGFEAYKLVNNALVDMYAKR 389

Query: 295 -YFDSMVNDYGIAAKPD--HYTCMVDLLGRAGKLVEAVDL---IKKMPFKPQPAIFGTLL 348
            YFD   + +      D   +T +V      G   EA+ L   ++ M   P   +   +L
Sbjct: 390 GYFDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEMRIMGIHPDQIVIAAVL 449

Query: 349 SACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVV 408
           SAC     L+  +    N       ++      L ++YA     +D  ++  SM+  +V+
Sbjct: 450 SACAELTVLEFGKQVHANFLKSGLGSSLSVDNSLVSMYAKCGCIEDANKVFDSMEIQDVI 509



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/204 (22%), Positives = 88/204 (43%), Gaps = 40/204 (19%)

Query: 182 CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA------------C-- 227
           C  L   +L   + + V        ++    ++S   KCG ++DA            C  
Sbjct: 16  CHQLEHTELNHHIRRFVNSCGTVHSSSDSNWVLSNLSKCGRVDDARKLFDVMPDRDECSW 75

Query: 228 -----------------KLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMK 270
                            KLF E   +  +TW+++ISGY ++G   +AL LF +M+ EG +
Sbjct: 76  NTMIGAYANSGRLNEARKLFYETPIRSCITWSSLISGYCRYGCDVEALELFWEMQYEGER 135

Query: 271 PDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDH----YTCMVDLLGRAGKLV 326
           P+  T+ ++L  C+   L++ G Q     ++ + I  + D      T +VD+  +   ++
Sbjct: 136 PNQFTWGSVLRVCSMYVLLEKGKQ-----IHAHAIKTQFDSNAFVVTGLVDMYAKCKCIL 190

Query: 327 EAVDLIKKMPFKPQPAIFGTLLSA 350
           EA  L +  P K    ++  +++ 
Sbjct: 191 EAEYLFELAPDKRNHVLWTAMVTG 214


>gi|224131508|ref|XP_002328557.1| predicted protein [Populus trichocarpa]
 gi|222838272|gb|EEE76637.1| predicted protein [Populus trichocarpa]
          Length = 643

 Score =  397 bits (1019), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 199/486 (40%), Positives = 298/486 (61%), Gaps = 8/486 (1%)

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAV 121
           F  +P  +  +WN M++   +  +M   R+LF  MP +N +SW+ M++GY + G+L+ A 
Sbjct: 164 FDEMPEPNAIAWNAMVTACCRGGDMKGGRELFDLMPVRNLMSWNVMLAGYTKAGELELAR 223

Query: 122 ELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLG 181
           E+F   P+K  V+W+ MI G+   GY E +++       R +   G+RPN +SL+ VL  
Sbjct: 224 EMFLEMPMKDDVSWSTMIVGFAHNGYFEEAFS-----FFRELQRKGMRPNETSLTGVLSA 278

Query: 182 CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI-QRKDVVT 240
           C+   +L+ GK +H  + KS L    +    L+  Y KCG++  A  +F  I   +++V+
Sbjct: 279 CAQAGALEFGKILHGFIEKSGLAWIVSVNNALLDTYSKCGNVLMAQLVFERIMNERNIVS 338

Query: 241 WNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV 300
           W +M++  A HG GE+A+ +F KM++ G++PD I F++LL AC+HAGLV+ G +YFD M 
Sbjct: 339 WTSMMAALAMHGHGEEAIGIFHKMEESGIRPDEIAFISLLYACSHAGLVEQGCEYFDKMK 398

Query: 301 NDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLA 360
             Y I    +HY CMVDL GRAG+L +A + + +MP      I+ TLL AC +H  + LA
Sbjct: 399 GMYNIEPSIEHYGCMVDLYGRAGQLQKAYEFVCQMPIPCTAIIWRTLLGACSMHGDVKLA 458

Query: 361 EFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGT 420
           E     L  L+P N++  +V L+N YA   KW D A +R SM E  + K PG+S IEV  
Sbjct: 459 EQVKERLSELDPNNSSD-HVLLSNAYAVAGKWKDAASVRRSMTEQRITKTPGWSMIEVDK 517

Query: 421 VVHEFRSGDRVHPELVSIHEKLKELEKRMKL-AGYVPDLEFALHAVGEEVKEQLLLFHSE 479
           +++ F +G + +      ++KLKE+ +R+++  GYVP++   LH + EE KE  +  HSE
Sbjct: 518 IMYTFLAGTKQYKITEEAYKKLKEIIRRLRVEGGYVPEIGRVLHDIEEEEKEGSVSVHSE 577

Query: 480 KLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTC 539
           KLA+AFG+ ++  G  IR+ KNLR+C DCH   K IS I K EI+VRD +RFH FKDG C
Sbjct: 578 KLAVAFGIARLCKGRTIRIVKNLRICRDCHAVMKLISQIYKVEIVVRDRSRFHSFKDGYC 637

Query: 540 SCGDYW 545
           SC DYW
Sbjct: 638 SCRDYW 643



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 65/283 (22%), Positives = 134/283 (47%), Gaps = 30/283 (10%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M V+  ++WN +LAG+ K  G+L+ A+E+F ++P  D VS++ M+     N      AF 
Sbjct: 198 MPVRNLMSWNVMLAGYTKA-GELELAREMFLEMPMKDDVSWSTMIVGFAHNG-YFEEAFS 255

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARD---LFLAMPEKNSVSW-----SAMISGYI 112
           FF+ L  K      T ++G +     A A +   +     EK+ ++W     +A++  Y 
Sbjct: 256 FFRELQRKGMRPNETSLTGVLSACAQAGALEFGKILHGFIEKSGLAWIVSVNNALLDTYS 315

Query: 113 ECGQLDKAVELF-KVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPN 171
           +CG +  A  +F ++   +++V+WT+M++     G+      E+ + +   M   GIRP+
Sbjct: 316 KCGNVLMAQLVFERIMNERNIVSWTSMMAALAMHGH-----GEEAIGIFHKMEESGIRPD 370

Query: 172 ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTP-------LISMYCKCGDLE 224
             +  S+L  CSH   ++ G +    +      K    + P       ++ +Y + G L+
Sbjct: 371 EIAFISLLYACSHAGLVEQGCEYFDKM------KGMYNIEPSIEHYGCMVDLYGRAGQLQ 424

Query: 225 DACKLFLEIQRK-DVVTWNAMISGYAQHGKGEKALRLFDKMKD 266
            A +   ++      + W  ++   + HG  + A ++ +++ +
Sbjct: 425 KAYEFVCQMPIPCTAIIWRTLLGACSMHGDVKLAEQVKERLSE 467



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 57/238 (23%), Positives = 101/238 (42%), Gaps = 16/238 (6%)

Query: 117 LDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLS 176
           LD A  LF+  P   V     +I G     Y  +   +  LK + M       P++ S +
Sbjct: 55  LDYACRLFRYTPNPDVFMHNTLIRGL----YESDRPQDSLLKFIEMRRNSFSPPDSFSFA 110

Query: 177 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK 236
            ++   ++L S+++G Q+H       L       T LISMY +CG +  A K+F E+   
Sbjct: 111 FIVKAAANLRSVRVGIQLHCQALVHGLDTHLFVGTTLISMYGECGFVGFARKVFDEMPEP 170

Query: 237 DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYF 296
           + + WNAM++   + G  +    LFD M    +    +++  +L     AG ++L  + F
Sbjct: 171 NAIAWNAMVTACCRGGDMKGGRELFDLMPVRNL----MSWNVMLAGYTKAGELELAREMF 226

Query: 297 DSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP---FKPQPAIFGTLLSAC 351
             M     ++     ++ M+      G   EA    +++     +P       +LSAC
Sbjct: 227 LEMPMKDDVS-----WSTMIVGFAHNGYFEEAFSFFRELQRKGMRPNETSLTGVLSAC 279


>gi|359482004|ref|XP_002276764.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Vitis vinifera]
          Length = 681

 Score =  397 bits (1019), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 209/532 (39%), Positives = 309/532 (58%), Gaps = 49/532 (9%)

Query: 57  AAFD---FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKN------------- 100
           A FD    F+ +P KD  SW  MI G+ +     +A   F  M ++              
Sbjct: 156 AMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLG 215

Query: 101 ------------SVSWS--------------AMISGYIECGQLDKAVELFKV-APVKSVV 133
                       SV  S              A+   Y + G ++ A  +F + +  ++VV
Sbjct: 216 ACGALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVV 275

Query: 134 AWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ 193
           ++T +I GY     VE    E GL +   +   GI PN  + SS++  C++ ++L+ G Q
Sbjct: 276 SYTCLIDGY-----VETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQ 330

Query: 194 VHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGK 253
           +H  V K    +D    + L+ MY KCG LE A + F EI     + WN+++S + QHG 
Sbjct: 331 LHAQVMKINFDEDPFVSSILVDMYGKCGLLEQAIQAFDEIGDPTEIAWNSLVSVFGQHGL 390

Query: 254 GEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYT 313
           G+ A+++F++M D G+KP++ITF++LL  C+HAGLV+ G+ YF SM   YG+    +HY+
Sbjct: 391 GKDAIKIFERMVDRGVKPNAITFISLLTGCSHAGLVEEGLDYFYSMDKTYGVVPGEEHYS 450

Query: 314 CMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPA 373
           C++DLLGRAG+L EA + I +MPF+P    + + L ACR+H   ++ + AA  L  L P 
Sbjct: 451 CVIDLLGRAGRLKEAKEFINRMPFEPNAFGWCSFLGACRIHGDKEMGKLAAEKLVKLEPK 510

Query: 374 NAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHP 433
           N +G  V L+NIYA  ++W+DV  +R+ M++ NV K+PGYSW++VG   H F + D  HP
Sbjct: 511 N-SGALVLLSNIYANERQWEDVRSVRMRMRDGNVKKLPGYSWVDVGYKTHVFGAEDWSHP 569

Query: 434 ELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLG 493
              +I+EKL  L  ++K AGYVP  +     + + +KE+LL  HSE++A+AF LI +P+G
Sbjct: 570 RKSAIYEKLDTLLDQIKAAGYVPRTDSVPLDMDDSMKEKLLHRHSERIAVAFALISMPIG 629

Query: 494 TPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
            PI V KNLRVC DCH A K+IS +  R+IIVRD +RFHHF DG+CSCGDYW
Sbjct: 630 KPIIVKKNLRVCVDCHSAIKFISKVTGRKIIVRDNSRFHHFTDGSCSCGDYW 681



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 90/323 (27%), Positives = 157/323 (48%), Gaps = 43/323 (13%)

Query: 67  IKDTASWNTMISGFVQKKNMAKARDL----FLAMPEKNSVSWSAMISGYIECGQLDKAVE 122
           ++DT +   +I  + + K + + + L      A     +   + +++ Y +CG+LD A++
Sbjct: 2   LRDTNALAHVIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALK 61

Query: 123 LFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGC 182
           LF   P +++V+WTAMISG       +NS   + ++    M   G  P   + SS +  C
Sbjct: 62  LFDTMPQRNLVSWTAMISGLS-----QNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRAC 116

Query: 183 SHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWN 242
           + L S+++GKQ+H L  K  +  +    + L  MY KCG + DACK+F E+  KD V+W 
Sbjct: 117 ASLGSIEMGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWT 176

Query: 243 AMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN-----------HAGLVDL 291
           AMI GY++ G+ E+AL  F KM DE +  D     + L AC            H+ +V L
Sbjct: 177 AMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKL 236

Query: 292 GIQY-----------------FDSMVNDYGIAAKPDH---YTCMVDLLGRAGKLVEAVDL 331
           G +                   +S  N +GI ++  +   YTC++D      ++ + + +
Sbjct: 237 GFESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSV 296

Query: 332 ---IKKMPFKPQPAIFGTLLSAC 351
              +++   +P    F +L+ AC
Sbjct: 297 FVELRRQGIEPNEFTFSSLIKAC 319


>gi|147832325|emb|CAN66581.1| hypothetical protein VITISV_030261 [Vitis vinifera]
          Length = 622

 Score =  397 bits (1019), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 214/549 (38%), Positives = 324/549 (59%), Gaps = 16/549 (2%)

Query: 5   TTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQR 64
            T  WN+++ G++  + + ++A  L+  +    V  +N      LL +   ++A +  Q+
Sbjct: 82  NTFMWNTMIRGYSNSK-EPEEALLLYHHMLYHSV-PHNAYTFPFLLKACSSMSASEETQQ 139

Query: 65  LPI--------KDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQ 116
           +           +  + N++++ + +  ++  AR LF  + ++++VSW++MI GY +CG+
Sbjct: 140 IHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGE 199

Query: 117 LDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLS 176
           ++ A E+F   P +++++WT+MISG +  G       ++ L L   M   GI+ +  +L 
Sbjct: 200 IEMAYEIFNHMPERNIISWTSMISGCVGAGK-----PKEALNLFHRMQTAGIKLDNVALV 254

Query: 177 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK 236
           S L  C+ L  L  GK +H  + K  +  D      LI MY KCGDLE+A ++F +++ K
Sbjct: 255 STLQACADLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEK 314

Query: 237 DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYF 296
            V  W AMISGYA HG+G +AL  F KM+  G++P+ +TF  +L AC+HAGLV      F
Sbjct: 315 GVSVWTAMISGYAIHGRGREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLF 374

Query: 297 DSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKR 356
           +SM   +G     +HY CMVDLLGRAG L EA +LI+ MP KP  AI+G LL+AC +H  
Sbjct: 375 ESMERIHGFKPSIEHYGCMVDLLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIHGN 434

Query: 357 LDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWI 416
           L+L +     L  ++P +  G Y+ LA+I+AA  +W+  AR+R  MKE  V K+PG S I
Sbjct: 435 LELGKQIGKILIQVDPGH-GGRYIHLASIHAAAGEWNQAARVRRQMKEQGVSKLPGCSVI 493

Query: 417 EVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLF 476
            V    HEF +GD  HP++  I   L+++ +R++  GY P L   L  + ++ KE  +  
Sbjct: 494 SVNGTAHEFLAGDESHPQIKEIDHMLEQIVERLREEGYKPKLGDLLLDLEDKEKETAIHH 553

Query: 477 HSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKD 536
           HSEKLA+ FGLI    G  IR+ KNLRVC DCH   K IS +  REI++RD TRFH FKD
Sbjct: 554 HSEKLAVTFGLISTKPGMTIRIVKNLRVCEDCHTVIKLISKVYAREILMRDRTRFHLFKD 613

Query: 537 GTCSCGDYW 545
           G C+CGDYW
Sbjct: 614 GNCTCGDYW 622



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 51/204 (25%), Positives = 88/204 (43%), Gaps = 37/204 (18%)

Query: 166 LGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYC---KCGD 222
           L    NA+    +L  CS++  L   +Q+H  + K+ L  D    + L++ +C     G 
Sbjct: 12  LSSESNAAQTLHLLQRCSNMEEL---RQIHGQMLKTGLILDEIPASKLLA-FCASPNSGS 67

Query: 223 LEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA 282
           L  A  +F  I R +   WN MI GY+   + E+AL L+  M    +  ++ TF  LL A
Sbjct: 68  LAYARTVFDRIFRPNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKA 127

Query: 283 CN-----------HAGLVDLG----IQYFDSMVNDYGIAA----------KPDH-----Y 312
           C+           HA ++ +G    I   +S++N Y  +           + D      +
Sbjct: 128 CSSMSASEETQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSW 187

Query: 313 TCMVDLLGRAGKLVEAVDLIKKMP 336
             M+D   + G++  A ++   MP
Sbjct: 188 NSMIDGYTKCGEIEMAYEIFNHMP 211


>gi|224057914|ref|XP_002299387.1| predicted protein [Populus trichocarpa]
 gi|222846645|gb|EEE84192.1| predicted protein [Populus trichocarpa]
          Length = 814

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 212/535 (39%), Positives = 300/535 (56%), Gaps = 68/535 (12%)

Query: 73  WNTMISGFVQKKNMAKARDLFLAMPE-----KNSVSWSAMISGYIEC------------- 114
           WN MI+G+ Q ++  KA  LF+ M        N+ + S+++  Y+ C             
Sbjct: 286 WNAMIAGYAQSEHDEKALMLFIEMEAAAGLYSNATTMSSIVPAYVRCEGISRKEGIHGYV 345

Query: 115 ----------------------GQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSW 152
                                 G +  +  +F     + +V+W  +I+ Y+  G      
Sbjct: 346 IKRGLETNRYLQNALIDMYSRMGDIKTSKRIFDSMEDRDIVSWNTIITSYVICGR----- 400

Query: 153 AEDGLKLLRMMIGLG----------------IRPNASSLSSVLLGCSHLSSLQLGKQVHQ 196
           + D L LL  M  +                  +PN+ +L +VL GC+ LS+L  GK++H 
Sbjct: 401 SSDALLLLHEMQRIEEKSTYDGDYNDEKQVPFKPNSITLMTVLPGCASLSALAKGKEIHA 460

Query: 197 LVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEK 256
              ++ L    T  + L+ MY KCG L  A ++F ++  ++V+TWN +I  Y  HGKG++
Sbjct: 461 YAIRNLLASQVTVGSALVDMYAKCGCLNLARRVFDQMPIRNVITWNVIIMAYGMHGKGKE 520

Query: 257 ALRLFDKMKDEG-----MKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDH 311
           +L LF+ M  EG     +KP  +TF+AL  +C+H+G+VD G+  F  M N++GI   PDH
Sbjct: 521 SLELFEDMVAEGAKGGEVKPTEVTFIALFASCSHSGMVDEGLSLFHKMKNEHGIEPAPDH 580

Query: 312 YTCMVDLLGRAGKLVEAVDLIKKMPFK-PQPAIFGTLLSACRVHKRLDLAEFAAMNLFNL 370
           Y C+VDL+GRAGK+ EA  L+  MP    +   + +LL ACR++  +++ E AA NL  L
Sbjct: 581 YACIVDLVGRAGKVEEAYGLVNTMPSGFDKVGAWSSLLGACRIYHNIEIGEIAAENLLQL 640

Query: 371 NPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDR 430
            P + A  YV L+NIY++   WD    +R  MK   V K PG SWIE G  VH+F +GD 
Sbjct: 641 QP-DVASHYVLLSNIYSSAGLWDKAMNLRRRMKAMGVKKEPGCSWIEYGDEVHKFLAGDL 699

Query: 431 VHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKV 490
            HP+   +H+ L+ L +R+K  GYVPD    LH + EE KE +L  HSEKLAIAFG++  
Sbjct: 700 SHPQSEKLHDFLETLSERLKKEGYVPDTACVLHDIDEEEKETILCGHSEKLAIAFGILNT 759

Query: 491 PLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           P GT IRV KNLRVC DCH A+K+IS IE REII+RD  RFHHFKDGTCSCGDYW
Sbjct: 760 PPGTTIRVAKNLRVCNDCHTASKFISKIEDREIILRDARRFHHFKDGTCSCGDYW 814



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 83/289 (28%), Positives = 148/289 (51%), Gaps = 16/289 (5%)

Query: 5   TTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQR 64
           ++V  ++ L     + G L DA ++FD+I + D VS+N ++S +    +  VA   F   
Sbjct: 45  SSVTIDNTLVNMYGKCGGLGDAYKVFDRITERDQVSWNSIISALCRFEEWEVAIKAFRLM 104

Query: 65  LPIKDTASWNTMISGFVQKKNMAKARDLFLAMP---------EKNSVSWSAMISGYIECG 115
           L      S  T++S  +   N+ K   L+L               + S +A+++ Y + G
Sbjct: 105 LMEGFEPSSFTLVSMALACSNLRKRDGLWLGKQIHGCCFRKGHWRTFSNNALMAMYAKLG 164

Query: 116 QLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSL 175
           +LD A  L  +   + +V W +MIS +      +N    + L  LR+M+  G++P+  + 
Sbjct: 165 RLDDAKSLLVLFEDRDLVTWNSMISSF-----SQNERFMEALMFLRLMVLEGVKPDGVTF 219

Query: 176 SSVLLGCSHLSSLQLGKQVHQLVFKSP-LCKDTTALTPLISMYCKCGDLEDACKLFLEIQ 234
           +SVL  CSHL  L+ GK++H    ++  + +++   + L+ MYC CG +E    +F  + 
Sbjct: 220 ASVLPACSHLDLLRTGKEIHAYALRTDDVIENSFVGSALVDMYCNCGQVESGRLVFDSVL 279

Query: 235 RKDVVTWNAMISGYAQHGKGEKALRLFDKMK-DEGMKPDSITFVALLLA 282
            + +  WNAMI+GYAQ    EKAL LF +M+   G+  ++ T  +++ A
Sbjct: 280 DRKIGLWNAMIAGYAQSEHDEKALMLFIEMEAAAGLYSNATTMSSIVPA 328



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 66/191 (34%), Positives = 109/191 (57%), Gaps = 9/191 (4%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI 164
           + +++ Y +CG L  A ++F     +  V+W ++IS   +F      W E  +K  R+M+
Sbjct: 51  NTLVNMYGKCGGLGDAYKVFDRITERDQVSWNSIISALCRF----EEW-EVAIKAFRLML 105

Query: 165 GLGIRPNASSLSSVLLGCSHL---SSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCG 221
             G  P++ +L S+ L CS+L     L LGKQ+H   F+    + T +   L++MY K G
Sbjct: 106 MEGFEPSSFTLVSMALACSNLRKRDGLWLGKQIHGCCFRKGHWR-TFSNNALMAMYAKLG 164

Query: 222 DLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLL 281
            L+DA  L +  + +D+VTWN+MIS ++Q+ +  +AL     M  EG+KPD +TF ++L 
Sbjct: 165 RLDDAKSLLVLFEDRDLVTWNSMISSFSQNERFMEALMFLRLMVLEGVKPDGVTFASVLP 224

Query: 282 ACNHAGLVDLG 292
           AC+H  L+  G
Sbjct: 225 ACSHLDLLRTG 235



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 50/129 (38%), Positives = 73/129 (56%), Gaps = 10/129 (7%)

Query: 163 MIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK------SPLCKDTTALTPLISM 216
           MIG G  P+  +  +VL   + +  L LGKQ+H  VFK      S +  D T    L++M
Sbjct: 1   MIGSGFSPDNFAFPAVLKAVAGIQELYLGKQIHAHVFKFGYGSFSSVTIDNT----LVNM 56

Query: 217 YCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITF 276
           Y KCG L DA K+F  I  +D V+WN++IS   +  + E A++ F  M  EG +P S T 
Sbjct: 57  YGKCGGLGDAYKVFDRITERDQVSWNSIISALCRFEEWEVAIKAFRLMLMEGFEPSSFTL 116

Query: 277 VALLLACNH 285
           V++ LAC++
Sbjct: 117 VSMALACSN 125



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 75/376 (19%), Positives = 152/376 (40%), Gaps = 80/376 (21%)

Query: 3   VKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILL--NSDDVVAAFD 60
           ++T     + L     + G +K ++ +FD +   D+VS+N +++  ++   S D +    
Sbjct: 350 LETNRYLQNALIDMYSRMGDIKTSKRIFDSMEDRDIVSWNTIITSYVICGRSSDALLLLH 409

Query: 61  FFQRLPIKDT--ASWN---------------TMISGFVQKKNMAKARDLFLAMPEKNSVS 103
             QR+  K T    +N               T++ G      +AK +++  A   +N ++
Sbjct: 410 EMQRIEEKSTYDGDYNDEKQVPFKPNSITLMTVLPGCASLSALAKGKEIH-AYAIRNLLA 468

Query: 104 -----WSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLK 158
                 SA++  Y +CG L+ A  +F   P+++V+ W  +I  Y   G       ++ L+
Sbjct: 469 SQVTVGSALVDMYAKCGCLNLARRVFDQMPIRNVITWNVIIMAYGMHGK-----GKESLE 523

Query: 159 LLRMMIGLG-----IRPNASSLSSVLLGCSHLSSLQLGKQV-HQLVFKSPLCKDTTALTP 212
           L   M+  G     ++P   +  ++   CSH   +  G  + H++  +  +         
Sbjct: 524 LFEDMVAEGAKGGEVKPTEVTFIALFASCSHSGMVDEGLSLFHKMKNEHGIEPAPDHYAC 583

Query: 213 LISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPD 272
           ++ +  + G +E+A  L            N M SG             FDK+        
Sbjct: 584 IVDLVGRAGKVEEAYGLV-----------NTMPSG-------------FDKVG------- 612

Query: 273 SITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPD---HYTCMVDLLGRAGKLVEAV 329
              + +LL AC     +++G      +  +  +  +PD   HY  + ++   AG   +A+
Sbjct: 613 --AWSSLLGACRIYHNIEIG-----EIAAENLLQLQPDVASHYVLLSNIYSSAGLWDKAM 665

Query: 330 DL---IKKMPFKPQPA 342
           +L   +K M  K +P 
Sbjct: 666 NLRRRMKAMGVKKEPG 681


>gi|297814916|ref|XP_002875341.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297321179|gb|EFH51600.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 659

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 219/542 (40%), Positives = 319/542 (58%), Gaps = 24/542 (4%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMI--- 77
           GKL+DA+++FD+IP+ ++VS+  M+    LN +  + A   F+ L I++     TM    
Sbjct: 125 GKLEDARKVFDEIPKRNIVSWTSMIRGYDLNGN-ALDAVSLFKDLLIEENDDDATMFLDS 183

Query: 78  ---------SGFVQKKNMAKARDLFLAMP--EKNSVSWSAMISGYIECGQLDKAV--ELF 124
                       V  K + ++   F+     ++     + ++  Y + G+   AV  ++F
Sbjct: 184 MGMVSVISACSRVAAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIF 243

Query: 125 KVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRP-NASSLSSVLLGCS 183
                K  V++ +++S Y + G      + +   + R +I   +   N  +LS+VLL  S
Sbjct: 244 DQIVDKDRVSYNSIMSVYAQSGM-----SNEAFDVFRRLIKEKVVTFNCITLSTVLLAVS 298

Query: 184 HLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNA 243
           H  +L++GK +H  V +  L  D    T +I MYCKCG +E A   F  ++ K+V +W A
Sbjct: 299 HSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARLAFDRMKNKNVRSWTA 358

Query: 244 MISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDY 303
           MI+GY  HG   KAL LF  M D G++P+ ITFV++L AC+HAGL D+G  +F++M   +
Sbjct: 359 MIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLHDVGWHWFNAMKGRF 418

Query: 304 GIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFA 363
           G+    +HY CMVDLLGRAG L +A DLI+KM  +P   I+ +LL+ACR+HK ++LAE +
Sbjct: 419 GVEPGLEHYGCMVDLLGRAGFLQKAYDLIQKMKMEPDSIIWSSLLAACRIHKNVELAEIS 478

Query: 364 AMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVH 423
              LF L+P+N  G Y+ L++IYA   +W DV R+R++MK   +VK PG+S +E+   VH
Sbjct: 479 VARLFELDPSN-CGYYMLLSHIYADSGRWKDVERVRMTMKNRGLVKPPGFSLLELNGEVH 537

Query: 424 EFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAI 483
            F  GD  HP+   I+E L EL +++  AGYV +     H V EE KE  L  HSEKLAI
Sbjct: 538 VFLIGDEEHPQREKIYEFLAELNRKLLEAGYVSNTSSVCHDVDEEEKEMTLRVHSEKLAI 597

Query: 484 AFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGD 543
           AFG++    G+ + V KNLRVC DCH   K IS I  RE +VRD  RFHHFKDG CSCGD
Sbjct: 598 AFGIMNTVPGSTVNVVKNLRVCSDCHNVIKLISKIVDREFVVRDAKRFHHFKDGFCSCGD 657

Query: 544 YW 545
           YW
Sbjct: 658 YW 659



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 51/159 (32%), Positives = 78/159 (49%), Gaps = 11/159 (6%)

Query: 132 VVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLG 191
           V +W ++I+   + G      + + L+    M  L + P  SS    +  CS L  +  G
Sbjct: 41  VFSWNSVIADLARSGD-----SAEALRAFSSMRKLSLYPTRSSFPCAIKACSSLLDIFSG 95

Query: 192 KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQH 251
           KQ HQ  F      D    + LI MY  CG LEDA K+F EI ++++V+W +MI GY  +
Sbjct: 96  KQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMIRGYDLN 155

Query: 252 GKGEKALRLFDKM------KDEGMKPDSITFVALLLACN 284
           G    A+ LF  +       D  M  DS+  V+++ AC+
Sbjct: 156 GNALDAVSLFKDLLIEENDDDATMFLDSMGMVSVISACS 194


>gi|224091821|ref|XP_002309359.1| predicted protein [Populus trichocarpa]
 gi|222855335|gb|EEE92882.1| predicted protein [Populus trichocarpa]
          Length = 605

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 214/533 (40%), Positives = 313/533 (58%), Gaps = 15/533 (2%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMIS-- 78
           G+++ A+ LF +I + D++S N M+S    N +   +   F + L   +  S +T++   
Sbjct: 80  GEVEIARLLFGEIRKKDLISCNAMISGFTCNGETEDSVRLFKELLSSGERVSSSTIVGLI 139

Query: 79  ------GFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSV 132
                 G     N      + L +   +SVS +A+ + Y    ++  A +LF  +  K++
Sbjct: 140 PVYSPFGHSYLCNCIHGFCVKLGIVSHSSVS-TALTTVYCRLNEMIFARQLFDESAEKTL 198

Query: 133 VAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGK 192
            +W AMISG       +N   +  + L + M    + PN  +++S+L  C+ + +L LG+
Sbjct: 199 ASWNAMISGC-----TQNGLTDAAISLFQTMQKNNVNPNPVTVTSILSACAQIGALSLGE 253

Query: 193 QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHG 252
            VH L+  +    +    T LI MY KCG +  A +LF  +  K+ VTWNAMISGY  HG
Sbjct: 254 WVHSLIKSNRFESNVYVSTALIDMYAKCGSITVARELFDLMPEKNEVTWNAMISGYGLHG 313

Query: 253 KGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY 312
            G++AL+LF  M    +KP  +TF+++L AC+HAGLV  G   F +MV+D+G     +HY
Sbjct: 314 HGQEALKLFYDMLSSSVKPTGLTFLSVLYACSHAGLVKEGDGIFHTMVHDFGFEPLAEHY 373

Query: 313 TCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNP 372
            CMVD+LGRAG+L +A++ IK MP +P P ++G LL AC +HK  +LA  A+  LF L+P
Sbjct: 374 ACMVDILGRAGQLKKALEFIKAMPVEPGPPVWGALLGACMIHKDTNLAHVASEKLFELDP 433

Query: 373 ANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVH 432
            N  G YV ++NIY+  +K+   A +R   K+  + K PG + IE+G V H F SGD+ H
Sbjct: 434 EN-IGYYVLMSNIYSVERKYPQAASVRQVAKKKRLAKTPGCTLIEIGQVPHVFTSGDQSH 492

Query: 433 PELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPL 492
           P+  +I+ +L +L  +M  AG+  +    LH + EE KE  +  HSEKLAIAFGLI    
Sbjct: 493 PQSKAIYAELDKLTGKMTEAGFQTETTTVLHDLEEEEKELTMKVHSEKLAIAFGLISTEP 552

Query: 493 GTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           G  IR+ KNLRVC DCH  TK++S I KR I+VRD  RFHHFKDG CSCGDYW
Sbjct: 553 GAEIRIIKNLRVCLDCHNWTKFLSKITKRVIVVRDANRFHHFKDGLCSCGDYW 605



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 63/236 (26%), Positives = 119/236 (50%), Gaps = 6/236 (2%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI 164
           + +IS + +CG+++ A  LF     K +++  AMISG+       N   ED ++L + ++
Sbjct: 70  TGLISLFSKCGEVEIARLLFGEIRKKDLISCNAMISGFTC-----NGETEDSVRLFKELL 124

Query: 165 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 224
             G R ++S++  ++   S      L   +H    K  +   ++  T L ++YC+  ++ 
Sbjct: 125 SSGERVSSSTIVGLIPVYSPFGHSYLCNCIHGFCVKLGIVSHSSVSTALTTVYCRLNEMI 184

Query: 225 DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 284
            A +LF E   K + +WNAMISG  Q+G  + A+ LF  M+   + P+ +T  ++L AC 
Sbjct: 185 FARQLFDESAEKTLASWNAMISGCTQNGLTDAAISLFQTMQKNNVNPNPVTVTSILSACA 244

Query: 285 HAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQ 340
             G + LG ++  S++      +     T ++D+  + G +  A +L   MP K +
Sbjct: 245 QIGALSLG-EWVHSLIKSNRFESNVYVSTALIDMYAKCGSITVARELFDLMPEKNE 299



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 75/254 (29%), Positives = 117/254 (46%), Gaps = 34/254 (13%)

Query: 143 MKFGYVENSWAEDGLKLL-RMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKS 201
           M  G+V+NS  ED +++   M++G G R + +++ +VL   + L  L+LG Q+  L  K 
Sbjct: 1   MISGFVKNSCFEDSIRVFGDMVLGNGPRFDLTTVIAVLPAVAELQELKLGMQILCLAIKC 60

Query: 202 PLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLF 261
                 + LT LIS++ KCG++E A  LF EI++KD+++ NAMISG+  +G+ E ++RLF
Sbjct: 61  GFYSHVSLLTGLISLFSKCGEVEIARLLFGEIRKKDLISCNAMISGFTCNGETEDSVRLF 120

Query: 262 DKMKDEGMKPDSITFVAL-----------LLACNHAGLVDLGI----------------- 293
            ++   G +  S T V L           L  C H   V LGI                 
Sbjct: 121 KELLSSGERVSSSTIVGLIPVYSPFGHSYLCNCIHGFCVKLGIVSHSSVSTALTTVYCRL 180

Query: 294 --QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP---FKPQPAIFGTLL 348
               F   + D         +  M+    + G    A+ L + M      P P    ++L
Sbjct: 181 NEMIFARQLFDESAEKTLASWNAMISGCTQNGLTDAAISLFQTMQKNNVNPNPVTVTSIL 240

Query: 349 SACRVHKRLDLAEF 362
           SAC     L L E+
Sbjct: 241 SACAQIGALSLGEW 254


>gi|296085026|emb|CBI28441.3| unnamed protein product [Vitis vinifera]
          Length = 913

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 218/557 (39%), Positives = 338/557 (60%), Gaps = 27/557 (4%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQ 63
           K +V+WNS+++G   Q    +DA E+F  +P+ D VS+N ++  +  +   V  A  +F 
Sbjct: 369 KDSVSWNSLISGL-DQNECSEDAAEMFSLMPEYDQVSWNSVIGALSDSEASVSQAVKYFL 427

Query: 64  RLPIKDTASWNTMISGFV------------QKKNMAKARDLFLAMPEKNSVSWSAMISGY 111
           ++       W      F+            +  +   A  L   + +  ++  +A++S Y
Sbjct: 428 QMM---RGGWGLSRVTFINILSAVSSLSLHEVSHQIHALVLKYCLSDDTAIG-NALLSCY 483

Query: 112 IECGQLDKAVELF-KVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRP 170
            +CG++++  ++F +++  +  V+W +MISGY     + N      + L+  M+  G R 
Sbjct: 484 GKCGEMNECEKIFARMSETRDEVSWNSMISGY-----IHNELLHKAMDLVWFMMQKGQRL 538

Query: 171 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 230
           ++ + +++L  C+ +++L+ G +VH    ++ L  D    + L+ MY KCG ++ A + F
Sbjct: 539 DSFTFATILSACASVATLERGMEVHACGIRACLESDVVVGSALVDMYSKCGRIDYASRFF 598

Query: 231 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVD 290
             +  ++V +WN+MISGYA+HG GEKAL+LF +M  +G  PD +TFV +L AC+H G V+
Sbjct: 599 ELMPLRNVYSWNSMISGYARHGHGEKALKLFTRMMLDGQPPDHVTFVGVLSACSHVGFVE 658

Query: 291 LGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSA 350
            G ++F SM   Y ++ + +H++CMVDLLGRAGKL E  D I  MP KP   I+ T+L A
Sbjct: 659 EGFEHFKSMSEVYRLSPRVEHFSCMVDLLGRAGKLDEVGDFINSMPMKPNVLIWRTVLGA 718

Query: 351 -CRVHKR-LDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVV 408
            CR + R  +L   AA  L  L P NA   YV LAN+YA+ +KW+DVA+ R +MKE  V 
Sbjct: 719 CCRANGRNTELGRRAAEMLLELEPQNAVN-YVLLANMYASGEKWEDVAKARTAMKEAAVK 777

Query: 409 KMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEE 468
           K  G SW+ +   VH F +GD++HPE   I++KL+EL ++M+ AGY+P  ++AL  +  E
Sbjct: 778 KEAGCSWVTMKDGVHVFVAGDKLHPEKDLIYDKLRELNRKMRDAGYIPQTKYALFDLELE 837

Query: 469 VKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDT 528
            KE+LL +HSEK+A+AF L +     PIR+ KNLRVCGDCH A  YIS I  R+I++RD+
Sbjct: 838 NKEELLSYHSEKIAVAFVLTRQS-ALPIRIMKNLRVCGDCHSAFGYISKIVGRQIVLRDS 896

Query: 529 TRFHHFKDGTCSCGDYW 545
            RFHHF+DG CSCGDYW
Sbjct: 897 NRFHHFEDGKCSCGDYW 913



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 94/359 (26%), Positives = 173/359 (48%), Gaps = 39/359 (10%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           + ++ +++WNS+++ +++ RG    A +LF  + Q + + ++          +D  + F 
Sbjct: 264 IGIRNSISWNSIISVYSR-RGDAVSAYDLFSSM-QKEGLGFS-------FKPNDAFSEFS 314

Query: 61  FFQ--------------RLPIKDT--ASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSW 104
             +              R  + D   A  N +++ + +   +A A  +F  M EK+SVSW
Sbjct: 315 VLEEGRRKGREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADACSVFELMVEKDSVSW 374

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI 164
           +++ISG  +    + A E+F + P    V+W ++I         E S ++     L+MM 
Sbjct: 375 NSLISGLDQNECSEDAAEMFSLMPEYDQVSWNSVIGA---LSDSEASVSQAVKYFLQMMR 431

Query: 165 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 224
           G G   +  +  ++L   S LS  ++  Q+H LV K  L  DT     L+S Y KCG++ 
Sbjct: 432 G-GWGLSRVTFINILSAVSSLSLHEVSHQIHALVLKYCLSDDTAIGNALLSCYGKCGEMN 490

Query: 225 DACKLFLEI-QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC 283
           +  K+F  + + +D V+WN+MISGY  +    KA+ L   M  +G + DS TF  +L AC
Sbjct: 491 ECEKIFARMSETRDEVSWNSMISGYIHNELLHKAMDLVWFMMQKGQRLDSFTFATILSAC 550

Query: 284 NHAGLVDLGIQYFDSMVNDYGIAAKPDH----YTCMVDLLGRAGKLVEAVDLIKKMPFK 338
                ++ G++     V+  GI A  +      + +VD+  + G++  A    + MP +
Sbjct: 551 ASVATLERGME-----VHACGIRACLESDVVVGSALVDMYSKCGRIDYASRFFELMPLR 604



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 81/309 (26%), Positives = 137/309 (44%), Gaps = 58/309 (18%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVV 133
           NT+I+ +V+  ++  A+ LF  M  +N V+W+ +ISGY + G+ D+A   F         
Sbjct: 138 NTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGYTQNGKPDEACARF--------- 188

Query: 134 AWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGC--SHLSSLQLG 191
                                      R M+  G  PN  +  S L  C  S  S  +LG
Sbjct: 189 ---------------------------RDMVRAGFIPNHYAFGSALRACQESGPSGCKLG 221

Query: 192 KQVHQLVFKSPLCKDTTALTPLISMYCKCGD-LEDACKLFLEIQRKDVVTWNAMISGYAQ 250
            Q+H L+ K+    D      LISMY  C D   DA  +F  I  ++ ++WN++IS Y++
Sbjct: 222 VQIHGLISKTRYGSDVVVCNVLISMYGSCLDSANDARSVFDGIGIRNSISWNSIISVYSR 281

Query: 251 HGKGEKALRLFDKMKDEGM----KP-DSITFVALLLACNHAGLVDLGIQYFDSMVNDYGI 305
            G    A  LF  M+ EG+    KP D+ +  ++L      G  ++      + +ND  +
Sbjct: 282 RGDAVSAYDLFSSMQKEGLGFSFKPNDAFSEFSVLEEGRRKGR-EVHAHVIRTGLNDNKV 340

Query: 306 AAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFA-- 363
           A        +V++  ++G + +A  + + M  K   + + +L+S       LD  E +  
Sbjct: 341 AIGNG----LVNMYAKSGAIADACSVFELMVEKDSVS-WNSLISG------LDQNECSED 389

Query: 364 AMNLFNLNP 372
           A  +F+L P
Sbjct: 390 AAEMFSLMP 398



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 140/293 (47%), Gaps = 23/293 (7%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNS--DDVVAAF-DFFQRLPIKDTASWNTMI 77
           G L  AQ+LFD++   ++V++  ++S    N   D+  A F D  +   I +  ++ + +
Sbjct: 148 GDLGSAQKLFDEMSNRNLVTWACLISGYTQNGKPDEACARFRDMVRAGFIPNHYAFGSAL 207

Query: 78  -----SGFVQKKNMAKARDLFLAMP-EKNSVSWSAMISGYIEC-GQLDKAVELFKVAPVK 130
                SG    K   +   L        + V  + +IS Y  C    + A  +F    ++
Sbjct: 208 RACQESGPSGCKLGVQIHGLISKTRYGSDVVVCNVLISMYGSCLDSANDARSVFDGIGIR 267

Query: 131 SVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPN-ASSLSSVLLGCSHLSSLQ 189
           + ++W ++IS Y + G   +++ +    + +  +G   +PN A S  SVL         +
Sbjct: 268 NSISWNSIISVYSRRGDAVSAY-DLFSSMQKEGLGFSFKPNDAFSEFSVLE-----EGRR 321

Query: 190 LGKQVHQLVFKSPLCKDTTAL-TPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGY 248
            G++VH  V ++ L  +  A+   L++MY K G + DAC +F  +  KD V+WN++ISG 
Sbjct: 322 KGREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADACSVFELMVEKDSVSWNSLISGL 381

Query: 249 AQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHA-GLVDLGIQYFDSMV 300
            Q+   E A  +F  M +     D +++ +++ A + +   V   ++YF  M+
Sbjct: 382 DQNECSEDAAEMFSLMPEY----DQVSWNSVIGALSDSEASVSQAVKYFLQMM 430


>gi|15231358|ref|NP_187990.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75273354|sp|Q9LIC3.1|PP227_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial; Flags: Precursor
 gi|9294022|dbj|BAB01925.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332641888|gb|AEE75409.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 628

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 210/532 (39%), Positives = 313/532 (58%), Gaps = 15/532 (2%)

Query: 23  LKDAQELFDKIPQPDVVSYNIMLS--CILLNSDDVVAAFDFFQRLPIK-DTASWNTMISG 79
           L+DA+++ D++P+ +VVS+  M+S      +S + +  F    R   K +  ++ T+++ 
Sbjct: 103 LEDARKVLDEMPEKNVVSWTAMISRYSQTGHSSEALTVFAEMMRSDGKPNEFTFATVLTS 162

Query: 80  FVQKKNMAKARDLFLAMPEKNSVSW----SAMISGYIECGQLDKAVELFKVAPVKSVVAW 135
            ++   +   + +   + + N  S     S+++  Y + GQ+ +A E+F+  P + VV+ 
Sbjct: 163 CIRASGLGLGKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIKEAREIFECLPERDVVSC 222

Query: 136 TAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVH 195
           TA+I+GY + G       E+ L++   +   G+ PN  + +S+L   S L+ L  GKQ H
Sbjct: 223 TAIIAGYAQLG-----LDEEALEMFHRLHSEGMSPNYVTYASLLTALSGLALLDHGKQAH 277

Query: 196 QLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGE 255
             V +  L         LI MY KCG+L  A +LF  +  +  ++WNAM+ GY++HG G 
Sbjct: 278 CHVLRRELPFYAVLQNSLIDMYSKCGNLSYARRLFDNMPERTAISWNAMLVGYSKHGLGR 337

Query: 256 KALRLFDKMKDEG-MKPDSITFVALLLACNHAGLVDLGIQYFDSMV-NDYGIAAKPDHYT 313
           + L LF  M+DE  +KPD++T +A+L  C+H  + D G+  FD MV  +YG     +HY 
Sbjct: 338 EVLELFRLMRDEKRVKPDAVTLLAVLSGCSHGRMEDTGLNIFDGMVAGEYGTKPGTEHYG 397

Query: 314 CMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPA 373
           C+VD+LGRAG++ EA + IK+MP KP   + G+LL ACRVH  +D+ E     L  + P 
Sbjct: 398 CIVDMLGRAGRIDEAFEFIKRMPSKPTAGVLGSLLGACRVHLSVDIGESVGRRLIEIEPE 457

Query: 374 NAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHP 433
           NA G YV L+N+YA+  +W DV  +R  M +  V K PG SWI+    +H F + DR HP
Sbjct: 458 NA-GNYVILSNLYASAGRWADVNNVRAMMMQKAVTKEPGRSWIQHEQTLHYFHANDRTHP 516

Query: 434 ELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLG 493
               +  K+KE+  +MK AGYVPDL   L+ V EE KE++LL HSEKLA+ FGLI    G
Sbjct: 517 RREEVLAKMKEISIKMKQAGYVPDLSCVLYDVDEEQKEKMLLGHSEKLALTFGLIATGEG 576

Query: 494 TPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
            PIRVFKNLR+C DCH   K  S + +RE+ +RD  RFH   DG CSCGDYW
Sbjct: 577 IPIRVFKNLRICVDCHNFAKIFSKVFEREVSLRDKNRFHQIVDGICSCGDYW 628



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 73/230 (31%), Positives = 120/230 (52%), Gaps = 14/230 (6%)

Query: 111 YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRP 170
           Y +C  L+ A ++    P K+VV+WTAMIS Y + G+     + + L +   M+    +P
Sbjct: 97  YGKCDCLEDARKVLDEMPEKNVVSWTAMISRYSQTGH-----SSEALTVFAEMMRSDGKP 151

Query: 171 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 230
           N  + ++VL  C   S L LGKQ+H L+ K          + L+ MY K G +++A ++F
Sbjct: 152 NEFTFATVLTSCIRASGLGLGKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIKEAREIF 211

Query: 231 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVD 290
             +  +DVV+  A+I+GYAQ G  E+AL +F ++  EGM P+ +T+ +LL A +   L+D
Sbjct: 212 ECLPERDVVSCTAIIAGYAQLGLDEEALEMFHRLHSEGMSPNYVTYASLLTALSGLALLD 271

Query: 291 LGIQYFDSMVND----YGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 336
            G Q    ++      Y +         ++D+  + G L  A  L   MP
Sbjct: 272 HGKQAHCHVLRRELPFYAVLQNS-----LIDMYSKCGNLSYARRLFDNMP 316



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 69/266 (25%), Positives = 120/266 (45%), Gaps = 13/266 (4%)

Query: 124 FKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCS 183
           F  +P   V+     IS     G ++ +  E        M  LG         ++L  C 
Sbjct: 12  FSSSPTNYVLQTILPISQLCSNGRLQEALLE--------MAMLGPEMGFHGYDALLNACL 63

Query: 184 HLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNA 243
              +L+ G++VH  + K+     T   T L+  Y KC  LEDA K+  E+  K+VV+W A
Sbjct: 64  DKRALRDGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKNVVSWTA 123

Query: 244 MISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDY 303
           MIS Y+Q G   +AL +F +M     KP+  TF  +L +C  A  + LG Q    ++  +
Sbjct: 124 MISRYSQTGHSSEALTVFAEMMRSDGKPNEFTFATVLTSCIRASGLGLGKQ-IHGLIVKW 182

Query: 304 GIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFA 363
              +     + ++D+  +AG++ EA ++ + +P +   +    +      + +L L E A
Sbjct: 183 NYDSHIFVGSSLLDMYAKAGQIKEAREIFECLPERDVVSCTAIIAG----YAQLGLDEEA 238

Query: 364 AMNLFNLNPANAAGCYVQLANIYAAM 389
                 L+    +  YV  A++  A+
Sbjct: 239 LEMFHRLHSEGMSPNYVTYASLLTAL 264



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 62/198 (31%), Positives = 97/198 (48%), Gaps = 29/198 (14%)

Query: 7   VNWN---------SVLAGFAKQRGKLKDAQELFDKIPQPDVVSYN-IMLSCILLNSDDVV 56
           V WN         S+L  +AK  G++K+A+E+F+ +P+ DVVS   I+     L  D+  
Sbjct: 180 VKWNYDSHIFVGSSLLDMYAKA-GQIKEAREIFECLPERDVVSCTAIIAGYAQLGLDE-- 236

Query: 57  AAFDFFQRLPIKDT-------ASWNTMISG--FVQKKNMAKARDLFLAMPEKNSVSWSAM 107
            A + F RL  +         AS  T +SG   +     A    L   +P   +V  +++
Sbjct: 237 EALEMFHRLHSEGMSPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELP-FYAVLQNSL 295

Query: 108 ISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLG 167
           I  Y +CG L  A  LF   P ++ ++W AM+ GY K G        + L+L R+M    
Sbjct: 296 IDMYSKCGNLSYARRLFDNMPERTAISWNAMLVGYSKHG-----LGREVLELFRLMRDEK 350

Query: 168 -IRPNASSLSSVLLGCSH 184
            ++P+A +L +VL GCSH
Sbjct: 351 RVKPDAVTLLAVLSGCSH 368


>gi|224065851|ref|XP_002301973.1| predicted protein [Populus trichocarpa]
 gi|222843699|gb|EEE81246.1| predicted protein [Populus trichocarpa]
          Length = 716

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 223/597 (37%), Positives = 320/597 (53%), Gaps = 71/597 (11%)

Query: 19  QRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK---DTASWNT 75
           Q   LKDA+ +FDK+PQP VV+ + ++S              F+Q   +    +  SWN 
Sbjct: 121 QFDHLKDARNVFDKLPQPGVVTSSALISRFARKGRVKETKELFYQTRDLGVELNLVSWNG 180

Query: 76  MISGFVQKKNMAKARDLFLAM------PEKNSVSW------------------------- 104
           MISGF +  +   A  +F  M      P+  SVS                          
Sbjct: 181 MISGFNRSGSYLDAVLMFQNMHLEGLKPDGTSVSSVLPAVGDLDMPLMGIQIHCYVIKQG 240

Query: 105 --------SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVEN------ 150
                   SA+I  Y +C    +   +F       V A  A+++G  + G V+N      
Sbjct: 241 LGPDKFVVSALIDMYGKCACASEMSGVFNEMDEVDVGACNALVTGLSRNGLVDNALEVFK 300

Query: 151 ----------SWAE------------DGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSL 188
                     SW              + L+L R M   G++PN+ ++  +L  C ++++L
Sbjct: 301 QFKGMDLNVVSWTSMIASCSQNGKDMEALELFREMQIEGVKPNSVTIPCLLPACGNIAAL 360

Query: 189 QLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGY 248
             GK  H    ++ +  D    + LI MY KCG +  +   F  +  +++V+WN++++GY
Sbjct: 361 LHGKAAHCFSLRNGIFNDVYVGSALIDMYAKCGRMLASRLCFDMMPNRNLVSWNSLMAGY 420

Query: 249 AQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK 308
           A HGK  +A+ +F+ M+  G KPD ++F  +L AC   GL + G  YFDSM  ++G+ A+
Sbjct: 421 AMHGKTFEAINIFELMQRCGQKPDHVSFTCVLSACTQGGLTEEGWFYFDSMSRNHGVEAR 480

Query: 309 PDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLF 368
            +HY+CMV LLGR+G+L EA  +IK+MPF+P   ++G LLS+CRVH R+DL E AA  +F
Sbjct: 481 MEHYSCMVTLLGRSGRLEEAYAMIKQMPFEPDSCVWGALLSSCRVHNRVDLGEIAAKRVF 540

Query: 369 NLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSG 428
            L P N  G Y+ L+NIYA+   W +V  +R  M+   + K PGYSWIE+   VH   +G
Sbjct: 541 ELEPRN-PGNYILLSNIYASKAMWVEVDMVRDMMRSRGLKKNPGYSWIEIKNKVHMLLAG 599

Query: 429 DRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLI 488
           D  HP++  I EKL +L   MK +GYVP  +F L  V E+ KEQ+L  HSEKLA+  GL+
Sbjct: 600 DSSHPQMPQIIEKLAKLTVEMKKSGYVPHTDFVLQDVEEQDKEQILCGHSEKLAVVLGLL 659

Query: 489 KVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
               G P++V KNLR+C DCH   K+IS  EKREI VRDT RFH FK G CSCGDYW
Sbjct: 660 NTKPGFPLQVIKNLRICRDCHAVIKFISDFEKREIFVRDTNRFHQFKGGVCSCGDYW 716



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 92/341 (26%), Positives = 169/341 (49%), Gaps = 52/341 (15%)

Query: 69  DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELF---- 124
           D+   ++++  +VQ  ++  AR++F  +P+   V+ SA+IS +   G++ +  ELF    
Sbjct: 108 DSVVLSSLLHMYVQFDHLKDARNVFDKLPQPGVVTSSALISRFARKGRVKETKELFYQTR 167

Query: 125 KVAPVKSVVAWTAMISGYMKFG-YVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCS 183
            +    ++V+W  MISG+ + G Y+      D + + + M   G++P+ +S+SSVL    
Sbjct: 168 DLGVELNLVSWNGMISGFNRSGSYL------DAVLMFQNMHLEGLKPDGTSVSSVLPAVG 221

Query: 184 HLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKC----------------------- 220
            L    +G Q+H  V K  L  D   ++ LI MY KC                       
Sbjct: 222 DLDMPLMGIQIHCYVIKQGLGPDKFVVSALIDMYGKCACASEMSGVFNEMDEVDVGACNA 281

Query: 221 --------GDLEDACKLFLEIQRKD--VVTWNAMISGYAQHGKGEKALRLFDKMKDEGMK 270
                   G +++A ++F + +  D  VV+W +MI+  +Q+GK  +AL LF +M+ EG+K
Sbjct: 282 LVTGLSRNGLVDNALEVFKQFKGMDLNVVSWTSMIASCSQNGKDMEALELFREMQIEGVK 341

Query: 271 PDSITFVALLLAC-NHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAV 329
           P+S+T   LL AC N A L+     +  S+ N  GI       + ++D+  + G+++ + 
Sbjct: 342 PNSVTIPCLLPACGNIAALLHGKAAHCFSLRN--GIFNDVYVGSALIDMYAKCGRMLASR 399

Query: 330 DLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNL 370
                MP +   + + +L++   +H +     F A+N+F L
Sbjct: 400 LCFDMMPNRNLVS-WNSLMAGYAMHGK----TFEAINIFEL 435



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/216 (25%), Positives = 95/216 (43%), Gaps = 40/216 (18%)

Query: 157 LKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISM 216
           +++   M+  GI P++  L +V+  C+ LS+LQ GKQ+H     S L  D+  L+ L+ M
Sbjct: 59  IRVFSYMLTQGIVPDSRVLPTVIKTCAALSALQTGKQMHCFALVSGLGLDSVVLSSLLHM 118

Query: 217 YCKCGDLEDACKLFLEIQRKDVVT-----------------------------------W 241
           Y +   L+DA  +F ++ +  VVT                                   W
Sbjct: 119 YVQFDHLKDARNVFDKLPQPGVVTSSALISRFARKGRVKETKELFYQTRDLGVELNLVSW 178

Query: 242 NAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN 301
           N MISG+ + G    A+ +F  M  EG+KPD  +  ++L A     +  +GIQ    ++ 
Sbjct: 179 NGMISGFNRSGSYLDAVLMFQNMHLEGLKPDGTSVSSVLPAVGDLDMPLMGIQIHCYVIK 238

Query: 302 DYGIAAKPDHY--TCMVDLLGRAGKLVEAVDLIKKM 335
                  PD +  + ++D+ G+     E   +  +M
Sbjct: 239 Q---GLGPDKFVVSALIDMYGKCACASEMSGVFNEM 271


>gi|357121594|ref|XP_003562503.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Brachypodium distachyon]
          Length = 544

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 205/492 (41%), Positives = 294/492 (59%), Gaps = 10/492 (2%)

Query: 55  VVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIEC 114
           V  A   F  +P +DT S+N+MI G+    ++  A+ LF  +     V+W++M++G+   
Sbjct: 62  VTDARRVFDGMPRRDTVSFNSMIHGYAVSGDVGSAQRLFERVLAPTPVTWTSMVAGFCRA 121

Query: 115 GQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASS 174
           G ++ A  +F+  P + +V+W AMISG      V N    + L L R M+  G  PN  +
Sbjct: 122 GDVESARRVFEEMPERDLVSWNAMISGC-----VGNRLPVEALCLFRWMMEEGFVPNRGT 176

Query: 175 LSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ 234
           + SVL  C+   +L+ GK VH  V K  L  D    T L+ MY KCG +E A ++F  ++
Sbjct: 177 VVSVLSACTGAGALETGKWVHVFVEKKRLRWDEFLGTALVDMYAKCGAVELALEVFTGLR 236

Query: 235 RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEG-MKPDSITFVALLLACNHAGLVDLGI 293
            ++  TWNAMI+G A +G   KAL +F +M+  G + PD +TFV +LLAC+HAG VD G 
Sbjct: 237 ARNTCTWNAMINGLAMNGYSAKALDMFRQMELNGTVAPDEVTFVGVLLACSHAGFVDAGK 296

Query: 294 QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRV 353
           ++F ++   YG+    +HY CMVDLL R+G L EA  LI +MP KP   ++  LL  CR+
Sbjct: 297 EHFYTIPQKYGVELILEHYACMVDLLARSGHLQEAHKLITEMPMKPDVVVWRALLGGCRL 356

Query: 354 HKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGY 413
           HK + +AE    N+ +   A  +G +V L+N+YAA+ +W+ V  +R +M+   + K+PG 
Sbjct: 357 HKNVKMAE----NVISEMEATCSGDHVLLSNLYAAVGRWNGVEDVRRTMRSKGIEKIPGC 412

Query: 414 SWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQL 473
           S +E+   +HEF SGD+ HP    IH KL E+  RM+  GYV +     + + +E KEQ 
Sbjct: 413 SSVEMDGSIHEFISGDKSHPSYDDIHAKLIEIGGRMQQHGYVTETAEVFYDIEDEEKEQA 472

Query: 474 LLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHH 533
           L +HSEKLAIAFGLI  P    IR+ KNLR C DCH   K +S I  REI+VRD  RFHH
Sbjct: 473 LGYHSEKLAIAFGLIGGPPEATIRIVKNLRFCTDCHSFAKLVSKIYHREIVVRDRARFHH 532

Query: 534 FKDGTCSCGDYW 545
           F+ G CSC D+W
Sbjct: 533 FRGGACSCNDFW 544



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 72/291 (24%), Positives = 129/291 (44%), Gaps = 56/291 (19%)

Query: 5   TTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQR 64
           T V W S++AGF +  G ++ A+ +F+++P+ D+VS+N M+S  + N            R
Sbjct: 107 TPVTWTSMVAGFCRA-GDVESARRVFEEMPERDLVSWNAMISGCVGN------------R 153

Query: 65  LPIKDTASWNTMI-SGFVQKKNMA-------------KARDLFLAMPEKNSVSW-----S 105
           LP++    +  M+  GFV  +                +         EK  + W     +
Sbjct: 154 LPVEALCLFRWMMEEGFVPNRGTVVSVLSACTGAGALETGKWVHVFVEKKRLRWDEFLGT 213

Query: 106 AMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMM-I 164
           A++  Y +CG ++ A+E+F     ++   W AMI+G    GY     +   L + R M +
Sbjct: 214 ALVDMYAKCGAVELALEVFTGLRARNTCTWNAMINGLAMNGY-----SAKALDMFRQMEL 268

Query: 165 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVH---------QLVFKSPLCKDTTALTPLIS 215
              + P+  +   VLL CSH   +  GK+           +L+ +   C        ++ 
Sbjct: 269 NGTVAPDEVTFVGVLLACSHAGFVDAGKEHFYTIPQKYGVELILEHYAC--------MVD 320

Query: 216 MYCKCGDLEDACKLFLEIQRK-DVVTWNAMISGYAQHGKGEKALRLFDKMK 265
           +  + G L++A KL  E+  K DVV W A++ G   H   + A  +  +M+
Sbjct: 321 LLARSGHLQEAHKLITEMPMKPDVVVWRALLGGCRLHKNVKMAENVISEME 371



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 72/152 (47%), Gaps = 14/152 (9%)

Query: 203 LCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFD 262
           LC  T      I  YC  G + DA ++F  + R+D V++N+MI GYA  G    A RLF+
Sbjct: 44  LCTRTN--NAFIQGYCSAGRVTDARRVFDGMPRRDTVSFNSMIHGYAVSGDVGSAQRLFE 101

Query: 263 KMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRA 322
           ++    + P  +T+ +++     AG V+   + F+ M     ++       C+ + L   
Sbjct: 102 RV----LAPTPVTWTSMVAGFCRAGDVESARRVFEEMPERDLVSWNAMISGCVGNRLP-- 155

Query: 323 GKLVEAVDLIKKM---PFKPQPAIFGTLLSAC 351
              VEA+ L + M    F P      ++LSAC
Sbjct: 156 ---VEALCLFRWMMEEGFVPNRGTVVSVLSAC 184


>gi|242079983|ref|XP_002444760.1| hypothetical protein SORBIDRAFT_07g027560 [Sorghum bicolor]
 gi|241941110|gb|EES14255.1| hypothetical protein SORBIDRAFT_07g027560 [Sorghum bicolor]
          Length = 650

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 227/556 (40%), Positives = 319/556 (57%), Gaps = 44/556 (7%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSD---------------D 54
           NS+++ +AK  G L DA  LFD++P+ +VV++  +++  L N+D               D
Sbjct: 119 NSLVSMYAKF-GLLDDALRLFDRMPERNVVTWTTVVAA-LANADGRKEEALRFLVAMWRD 176

Query: 55  VVA--AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYI 112
            VA  A+ F   L    T      +     K  +    D+F+          S++I  Y+
Sbjct: 177 GVAPNAYTFSSVLGACGTPGVLAALHASTVKVGLDS--DVFVR---------SSLIDAYM 225

Query: 113 ECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDG---LKLLRMMIGLGIR 169
           + G LD    +F     + +V W ++I+G+ + G        DG   ++L   M   G  
Sbjct: 226 KLGDLDGGRRVFDEMVTRDLVVWNSIIAGFAQSG--------DGVGAIELFMRMKDAGFS 277

Query: 170 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 229
            N  +L+SVL  C+ +  L+ G+QVH  V K    +D      L+ MYCKCG LEDA  L
Sbjct: 278 ANQGTLTSVLRACTGMVMLEAGRQVHAHVLKYE--RDLILHNALLDMYCKCGSLEDAEAL 335

Query: 230 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLV 289
           F  + ++DV++W+ MISG AQ+GK  +ALR+FD MK EG+ P+ IT V +L AC+HAGLV
Sbjct: 336 FHRMPQRDVISWSTMISGLAQNGKSAEALRVFDLMKSEGVAPNRITMVGVLFACSHAGLV 395

Query: 290 DLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLS 349
           + G  YF SM   +GI  + +H+ CMVDLLGRAGKL EAV+ I+ M  +P   I+ TLL 
Sbjct: 396 EDGWYYFRSMKKLFGIQPEREHHNCMVDLLGRAGKLDEAVEFIRDMNLEPDAVIWRTLLG 455

Query: 350 ACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVK 409
           ACR+HK  +LA +AA  +  L P +  G  V L+N YA +++W D  +   +M++  + K
Sbjct: 456 ACRMHKSGNLAAYAAREILKLEP-DDQGARVLLSNTYADLRQWTDAEKSWKAMRDRGMKK 514

Query: 410 MPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEV 469
            PG SWIE+   VH F +GD  HP   +I ++L  L  R+   GYVP  EF L  +  E 
Sbjct: 515 EPGRSWIELEKHVHVFIAGDLSHPCSDTIVQELNRLIGRISALGYVPQTEFVLQDLAIEQ 574

Query: 470 KEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTT 529
           KE LL +HSEK+AIAFG +    G PIR+ KNLR+CGDCH   K +S  E R II+RD  
Sbjct: 575 KEDLLKYHSEKMAIAFGTMHAVGGKPIRIMKNLRICGDCHAFAKLVSKSEGRMIIIRDPV 634

Query: 530 RFHHFKDGTCSCGDYW 545
           RFHHF+DG CSCGDYW
Sbjct: 635 RFHHFQDGACSCGDYW 650



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 59/271 (21%), Positives = 105/271 (38%), Gaps = 58/271 (21%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVV---- 56
           M  +  V WNS++AGFA Q G    A ELF ++      +    L+ +L     +V    
Sbjct: 240 MVTRDLVVWNSIIAGFA-QSGDGVGAIELFMRMKDAGFSANQGTLTSVLRACTGMVMLEA 298

Query: 57  -----AAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGY 111
                A    ++R    D    N ++  + +  ++  A  LF  MP+++ +SWS MISG 
Sbjct: 299 GRQVHAHVLKYER----DLILHNALLDMYCKCGSLEDAEALFHRMPQRDVISWSTMISGL 354

Query: 112 IECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPN 171
            + G+  +A+ +F                                     +M   G+ PN
Sbjct: 355 AQNGKSAEALRVFD------------------------------------LMKSEGVAPN 378

Query: 172 ASSLSSVLLGCSHLSSLQLG----KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC 227
             ++  VL  CSH   ++ G    + + +L    P  +    +  L+    + G L++A 
Sbjct: 379 RITMVGVLFACSHAGLVEDGWYYFRSMKKLFGIQPEREHHNCMVDLLG---RAGKLDEAV 435

Query: 228 KLFLEIQ-RKDVVTWNAMISGYAQHGKGEKA 257
           +   ++    D V W  ++     H  G  A
Sbjct: 436 EFIRDMNLEPDAVIWRTLLGACRMHKSGNLA 466


>gi|356575510|ref|XP_003555883.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Glycine max]
          Length = 618

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 210/553 (37%), Positives = 315/553 (56%), Gaps = 55/553 (9%)

Query: 37  DVVSYNIMLS----CILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDL 92
           D+++ N++++    C L++S     A   F  +P+K   SWNT+I    Q     +A  L
Sbjct: 77  DILTSNMLINMYSKCSLVDS-----ARKKFNEMPVKSLVSWNTVIGALTQNAEDREALKL 131

Query: 93  FLAMP---------------------------------------EKNSVSWSAMISGYIE 113
            + M                                        + N    +A++  Y +
Sbjct: 132 LIQMQREGTPFNEFTISSVLCNCAFKCAILECMQLHAFSIKAAIDSNCFVGTALLHVYAK 191

Query: 114 CGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNAS 173
           C  +  A ++F+  P K+ V W++M++GY     V+N + E+ L + R    +G   +  
Sbjct: 192 CSSIKDASQMFESMPEKNAVTWSSMMAGY-----VQNGFHEEALLIFRNAQLMGFDQDPF 246

Query: 174 SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI 233
            +SS +  C+ L++L  GKQVH +  KS    +    + LI MY KCG + +A  +F  +
Sbjct: 247 MISSAVSACAGLATLIEGKQVHAISHKSGFGSNIYVSSSLIDMYAKCGCIREAYLVFQGV 306

Query: 234 -QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 292
            + + +V WNAMISG+A+H +  +A+ LF+KM+  G  PD +T+V +L AC+H GL + G
Sbjct: 307 LEVRSIVLWNAMISGFARHARAPEAMILFEKMQQRGFFPDDVTYVCVLNACSHMGLHEEG 366

Query: 293 IQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACR 352
            +YFD MV  + ++    HY+CM+D+LGRAG + +A DLI++MPF    +++G+LL++C+
Sbjct: 367 QKYFDLMVRQHNLSPSVLHYSCMIDILGRAGLVHKAYDLIERMPFNATSSMWGSLLASCK 426

Query: 353 VHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPG 412
           ++  ++ AE AA  LF + P NA G ++ LANIYAA KKWD+VAR R  ++E +V K  G
Sbjct: 427 IYGNIEFAEIAAKYLFEMEPNNA-GNHILLANIYAANKKWDEVARARKLLRETDVRKERG 485

Query: 413 YSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQ 472
            SWIE+   +H F  G+R HP++  I+ KL  L   +K   Y  D    LH V E  K+ 
Sbjct: 486 TSWIEIKNKIHSFTVGERNHPQIDDIYAKLDNLVVELKKLNYKVDTSNDLHDVEENRKQM 545

Query: 473 LLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFH 532
           LL  HSEKLAI FGL+ +P   PIR+ KNLR+CGDCH   K +S    REIIVRDT RFH
Sbjct: 546 LLRHHSEKLAITFGLMCLPRDIPIRIIKNLRICGDCHTFMKLVSKSTSREIIVRDTNRFH 605

Query: 533 HFKDGTCSCGDYW 545
           HFKDG CSCG++W
Sbjct: 606 HFKDGFCSCGEFW 618



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 78/170 (45%), Gaps = 9/170 (5%)

Query: 173 SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLE 232
           S+L  +L  C+   S   G+  H  + +  L  D      LI+MY KC  ++ A K F E
Sbjct: 44  SNLHYLLQLCAKTRSSMGGRACHAQIIRIGLEMDILTSNMLINMYSKCSLVDSARKKFNE 103

Query: 233 IQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 292
           +  K +V+WN +I    Q+ +  +AL+L  +M+ EG   +  T  ++L  C     +   
Sbjct: 104 MPVKSLVSWNTVIGALTQNAEDREALKLLIQMQREGTPFNEFTISSVLCNCAFKCAILEC 163

Query: 293 IQYFDSMVNDYGIAAKPDHY----TCMVDLLGRAGKLVEAVDLIKKMPFK 338
           +Q     ++ + I A  D      T ++ +  +   + +A  + + MP K
Sbjct: 164 MQ-----LHAFSIKAAIDSNCFVGTALLHVYAKCSSIKDASQMFESMPEK 208


>gi|255543413|ref|XP_002512769.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223547780|gb|EEF49272.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 684

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 213/554 (38%), Positives = 326/554 (58%), Gaps = 16/554 (2%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M VK  V+W S+   +    G  +    LF ++    + + ++ +S IL    D +    
Sbjct: 138 MVVKDVVSWTSMTYCYVNC-GMCRQGILLFREMGLNGIRANSLTVSSILPACADYIKLGR 196

Query: 61  FFQRLPIKDTASWNTMISG-----FVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECG 115
                 +++    N  +S      +     + +AR +F +M  ++ VSW+ M++ Y    
Sbjct: 197 EVHGFILRNEMEGNVYVSSALVNMYASSLGLKQARLVFDSMYHRDIVSWNVMLTAYFLNK 256

Query: 116 QLDKAVELFKVAPVKSV----VAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPN 171
           + ++ + LF     + +     +W A ISG M     +N   E  L +L  M   GI+PN
Sbjct: 257 EYERGLGLFHQMRKEGIKLNQASWNAAISGCM-----QNGQHELALGILCKMQDSGIKPN 311

Query: 172 ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFL 231
             ++ S L GC++L SL+ GK++H  VF+    +D T  T L+ +Y KCGDLE +  +F 
Sbjct: 312 RITIVSALPGCTNLESLRGGKEIHGYVFRHWFIEDVTITTALVLLYAKCGDLELSRHVFN 371

Query: 232 EIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDL 291
            + RKDVV WN MI   + HGKG ++L LF+KM D G++P+S+TF+ +L  C+H+ L D 
Sbjct: 372 TMPRKDVVAWNTMIMANSMHGKGGESLILFNKMLDSGVEPNSVTFIGVLSGCSHSQLADE 431

Query: 292 GIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSAC 351
           G+  F+SM +++ I    DHY+CMVD+L RAG+L EA D I+KMP +P  A +G LL AC
Sbjct: 432 GLLVFNSMSSEHSITPDADHYSCMVDVLSRAGRLEEAYDFIRKMPIEPTAAAWGALLGAC 491

Query: 352 RVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMP 411
           RV+K ++L   AA  LF + P N AG YV L+NI    KKW + + IR  M++  + K P
Sbjct: 492 RVYKNVELGTLAASQLFEIEPDN-AGNYVLLSNILVTAKKWVEASEIRKMMRDKGLAKTP 550

Query: 412 GYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKE 471
           G SW++V   V+ F +GD+ + +   I+  L E++++M+L GY P+ +F L  V +E +E
Sbjct: 551 GRSWVQVKNKVYSFVTGDKSNEQKDMIYRFLDEIDEKMRLDGYQPNTDFVLQNVDQEQRE 610

Query: 472 QLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRF 531
           + L  HSE+LA+AFG++     T +RVFKNLR+CGDCH A K I+ I   +IIVRD+ RF
Sbjct: 611 ETLCSHSERLAVAFGILNSSGKTTVRVFKNLRICGDCHNAIKLIAKIVGMQIIVRDSLRF 670

Query: 532 HHFKDGTCSCGDYW 545
           HHF+DG C+C D+W
Sbjct: 671 HHFRDGYCTCNDFW 684



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 89/186 (47%), Gaps = 7/186 (3%)

Query: 107 MISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGL 166
           +I   +  G L +A+ LF   P   +  WT +ISG+ + G+      +  + +   ++  
Sbjct: 17  LIKTCLNSGDLKRALYLFDKIPEPDLRTWTILISGHTQHGF-----PKKAIDIYSTLLSR 71

Query: 167 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 226
            +RP+   L SV   C+    L + K++H    +    KD      LI M+ KC  +  A
Sbjct: 72  NVRPDKFVLLSVAKACAASGDLVVAKKIHDDAIQFGFNKDLVLGNALIDMFGKCKFVNGA 131

Query: 227 CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHA 286
             +F ++  KDVV+W +M   Y   G   + + LF +M   G++ +S+T  ++L AC  A
Sbjct: 132 RCVFDDMVVKDVVSWTSMTYCYVNCGMCRQGILLFREMGLNGIRANSLTVSSILPAC--A 189

Query: 287 GLVDLG 292
             + LG
Sbjct: 190 DYIKLG 195



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 29/109 (26%), Positives = 54/109 (49%), Gaps = 1/109 (0%)

Query: 213 LISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPD 272
           LI      GDL+ A  LF +I   D+ TW  +ISG+ QHG  +KA+ ++  +    ++PD
Sbjct: 17  LIKTCLNSGDLKRALYLFDKIPEPDLRTWTILISGHTQHGFPKKAIDIYSTLLSRNVRPD 76

Query: 273 SITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGR 321
               +++  AC  +G + +  +  D  +  +G          ++D+ G+
Sbjct: 77  KFVLLSVAKACAASGDLVVAKKIHDDAIQ-FGFNKDLVLGNALIDMFGK 124


>gi|297810761|ref|XP_002873264.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297319101|gb|EFH49523.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 624

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 204/517 (39%), Positives = 307/517 (59%), Gaps = 12/517 (2%)

Query: 31  DKIPQPDVVSYNIMLSCILLNSDDVVAAFDF-FQRLPIKDTASWNTMISGFVQKKNMAKA 89
           D I  P ++  +  + C+++          F FQ     D    N+++  +     +A A
Sbjct: 118 DNITFPFLIKASTEMECVVVGEQTHSQIVRFGFQ----NDVYVENSLVHMYANCGLIAAA 173

Query: 90  RDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVE 149
             +F  MP ++ VSW++M++GY +CG ++ A E+F   P +++  W+ MI+GY K     
Sbjct: 174 GRIFGQMPFRDVVSWTSMVAGYCKCGMVEDAREMFDEMPHRNLFTWSIMINGYAK----- 228

Query: 150 NSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTA 209
           N+  E  + L  +M   G+  N + + SV+  C+HL +L+ G++ H+ V KS +  +   
Sbjct: 229 NNCFEKAIDLFELMKREGVVANETVMVSVISSCAHLGALEFGERAHEYVVKSHMTVNLIL 288

Query: 210 LTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGM 269
            T L+ MY +CG++E A ++F E+  KD ++W+++I G A HG   KA+  F +M   G 
Sbjct: 289 GTALVDMYWRCGEIEKAIRVFEELPDKDSLSWSSIIKGLAVHGHAHKAIHYFSQMVRLGF 348

Query: 270 KPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAV 329
            P  IT  A+L AC+H GLVD G++ +++M  DYGI  + +HY C+VD+LGRAGKL EA 
Sbjct: 349 SPRDITLTAVLSACSHGGLVDKGLEIYENMKRDYGIEPRLEHYGCIVDMLGRAGKLAEAE 408

Query: 330 DLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAM 389
           + I KMP KP   I G LL AC+++K  ++AE     L  + P + +G YV L+NIYA  
Sbjct: 409 NFILKMPVKPNAPILGALLGACKIYKNTEVAERVGNMLIEVKPEH-SGYYVLLSNIYACA 467

Query: 390 KKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSG-DRVHPELVSIHEKLKELEKR 448
            +W+ +  +R  MKE  V K PG+S IE+   +++F  G D+ HPE+  I    +E+  +
Sbjct: 468 GQWEKLESLRDIMKEKLVKKPPGWSLIEIDGKINKFSMGDDQKHPEMGKIKRLWEEILGK 527

Query: 449 MKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDC 508
           ++L GY  +   A   V EE KE  +  HSEKLAIA+G++K   GT IR+ KNLRVC DC
Sbjct: 528 IRLIGYKGNTGDAFFDVDEEEKETAIHMHSEKLAIAYGMMKTKTGTTIRIVKNLRVCEDC 587

Query: 509 HRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           H ATK IS +  RE IVRD  RFHHF++G CSC DYW
Sbjct: 588 HTATKLISEVYGREFIVRDRNRFHHFRNGLCSCRDYW 624



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/205 (23%), Positives = 107/205 (52%), Gaps = 17/205 (8%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNS--DDVVAA 58
           M  +  V+W S++AG+ K  G ++DA+E+FD++P  ++ +++IM++    N+  +  +  
Sbjct: 180 MPFRDVVSWTSMVAGYCKC-GMVEDAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDL 238

Query: 59  FDFFQRLPIKDTASWNTMISGFVQKKNMA------KARDLFL-AMPEKNSVSWSAMISGY 111
           F+  +R  +   A+   M+S      ++       +A +  + +    N +  +A++  Y
Sbjct: 239 FELMKREGV--VANETVMVSVISSCAHLGALEFGERAHEYVVKSHMTVNLILGTALVDMY 296

Query: 112 IECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPN 171
             CG+++KA+ +F+  P K  ++W+++I G    G+     A   +     M+ LG  P 
Sbjct: 297 WRCGEIEKAIRVFEELPDKDSLSWSSIIKGLAVHGH-----AHKAIHYFSQMVRLGFSPR 351

Query: 172 ASSLSSVLLGCSHLSSLQLGKQVHQ 196
             +L++VL  CSH   +  G ++++
Sbjct: 352 DITLTAVLSACSHGGLVDKGLEIYE 376



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/207 (22%), Positives = 95/207 (45%), Gaps = 32/207 (15%)

Query: 163 MIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGD 222
           M+   I P+  +   ++   + +  + +G+Q H  + +     D      L+ MY  CG 
Sbjct: 110 MLKSRIWPDNITFPFLIKASTEMECVVVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGL 169

Query: 223 LEDACKLFLEIQRKDVVTWNA-------------------------------MISGYAQH 251
           +  A ++F ++  +DVV+W +                               MI+GYA++
Sbjct: 170 IAAAGRIFGQMPFRDVVSWTSMVAGYCKCGMVEDAREMFDEMPHRNLFTWSIMINGYAKN 229

Query: 252 GKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDH 311
              EKA+ LF+ MK EG+  +    V+++ +C H G ++ G +  + +V  + +      
Sbjct: 230 NCFEKAIDLFELMKREGVVANETVMVSVISSCAHLGALEFGERAHEYVVKSH-MTVNLIL 288

Query: 312 YTCMVDLLGRAGKLVEAVDLIKKMPFK 338
            T +VD+  R G++ +A+ + +++P K
Sbjct: 289 GTALVDMYWRCGEIEKAIRVFEELPDK 315



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 64/304 (21%), Positives = 124/304 (40%), Gaps = 29/304 (9%)

Query: 177 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGD---------LEDAC 227
           ++L  CS  S L++   +H  + ++ L  D    + L+++     D         L  A 
Sbjct: 17  ALLQSCSSFSDLKI---IHGFLLRTHLISDVFVASRLLALALCVDDSTFHKPTNLLGYAY 73

Query: 228 KLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG 287
            +F +IQ  ++  +N +I  ++   +  KA   + +M    + PD+ITF  L+ A     
Sbjct: 74  GIFSQIQNPNLFVFNVLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASTEME 133

Query: 288 LVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTL 347
            V +G Q    +V  +G          +V +    G +  A  +  +MPF+   +    +
Sbjct: 134 CVVVGEQTHSQIVR-FGFQNDVYVENSLVHMYANCGLIAAAGRIFGQMPFRDVVSWTSMV 192

Query: 348 LSACRV----HKRLDLAEFAAMNLFN----LNPANAAGCYVQLANIYAAMKKWDDVARIR 399
              C+       R    E    NLF     +N      C+ +  +++  MK+   VA   
Sbjct: 193 AGYCKCGMVEDAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFELMKREGVVANET 252

Query: 400 LSMKENNVVKMPGYSWIEVGTVVHEF--RSGDRVH----PELVSIHEKLKELEKRMKLAG 453
           + +   +     G   +E G   HE+  +S   V+      LV ++ +  E+EK +++  
Sbjct: 253 VMVSVISSCAHLGA--LEFGERAHEYVVKSHMTVNLILGTALVDMYWRCGEIEKAIRVFE 310

Query: 454 YVPD 457
            +PD
Sbjct: 311 ELPD 314


>gi|357140731|ref|XP_003571917.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 695

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 217/547 (39%), Positives = 323/547 (59%), Gaps = 21/547 (3%)

Query: 11  SVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNS--DDVVAAFDFFQR--LP 66
           S LA    + G L +A  +FD++PQ D V++  M+     N   +  V AF   +R  L 
Sbjct: 158 SNLADMYSKSGLLVEACRVFDQMPQKDAVAWTAMIDGYAKNGNLEAAVIAFRDMRREGLV 217

Query: 67  IKDTASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMISGYIECGQLDKAVE 122
             D     +++S     K+   AR +   +     E+     +A+   Y +   +D A  
Sbjct: 218 GADQHVLCSVLSASGGLKDGWLARAIHSCVMKSGFEQEVAVRNALTDMYAKAADMDNAAR 277

Query: 123 LFKVAPVK-SVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGL---GIRPNASSLSSV 178
           + K+     +VV+ T++I GY++   +E        K L M I L   G+ PN  + SS+
Sbjct: 278 VVKIDQGSLNVVSATSLIDGYIETDCIE--------KALLMFIELRRQGVEPNEFTFSSM 329

Query: 179 LLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDV 238
           + GC+  + L+ G Q+H  V K+ L  D+   + L+ MY KCG +  + +LF EI+    
Sbjct: 330 IKGCAMQALLEQGAQLHAEVIKTSLISDSFVSSTLLDMYGKCGLISLSIQLFKEIEYHTD 389

Query: 239 VTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDS 298
           + WNA I+  AQHG G +A+R FD+M   G++P+ ITFV+LL AC+HAGLVD G++YF S
Sbjct: 390 IAWNAAINVLAQHGHGREAIRAFDRMTSSGIRPNHITFVSLLTACSHAGLVDEGLKYFYS 449

Query: 299 MVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLD 358
           M + +GI  K +HY+C++D+ GRAG+L EA   I +MP KP    + +LL ACR+    +
Sbjct: 450 MKDHHGIEPKGEHYSCIIDMYGRAGRLDEAEKFIGEMPVKPNAYGWCSLLGACRMRGNKE 509

Query: 359 LAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEV 418
           L E AA N+  L P N  G +V L+ IYA++ +W+DV  +R  M++N + K+PG+SW++ 
Sbjct: 510 LGEIAADNMMKLEPDN-TGVHVSLSGIYASLGQWEDVKAVRKLMRDNRIKKLPGFSWVDS 568

Query: 419 GTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHS 478
               H F S D  HP+   I+EKL+EL +R+K  GYVPD  F    + +  K+++L +HS
Sbjct: 569 NKKTHVFGSEDWSHPQQEKIYEKLEELYERIKEEGYVPDTRFLPCNLEDTAKQRILRYHS 628

Query: 479 EKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGT 538
           E++A+AF LI +P   PI V KNLR+C DCH A K+IS +E R+IIVRD +RFHHF  G 
Sbjct: 629 ERIAVAFALISMPATKPIIVKKNLRICADCHSALKFISKVENRDIIVRDNSRFHHFVKGG 688

Query: 539 CSCGDYW 545
           CSCGDYW
Sbjct: 689 CSCGDYW 695



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 83/163 (50%), Gaps = 5/163 (3%)

Query: 107 MISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGL 166
           +I+ Y  C  +  AV LF   P  ++V+WT ++SG       +NS   D L     M   
Sbjct: 59  LITMYSHCADVPSAVRLFDAMPRPNLVSWTTLVSGL-----TQNSMHRDALAAFSSMCRA 113

Query: 167 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 226
           G+ P   +LSS     + L++   G Q+H +  +     +    + L  MY K G L +A
Sbjct: 114 GLVPTQFALSSAARAAAALAARHAGAQLHCVGVRLGFDAELFVASNLADMYSKSGLLVEA 173

Query: 227 CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGM 269
           C++F ++ +KD V W AMI GYA++G  E A+  F  M+ EG+
Sbjct: 174 CRVFDQMPQKDAVAWTAMIDGYAKNGNLEAAVIAFRDMRREGL 216



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 72/165 (43%), Gaps = 2/165 (1%)

Query: 175 LSSVLLGCSHLSSLQLGKQVH-QLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI 233
           L++ L  C     L+LG+ +H +LV        T     LI+MY  C D+  A +LF  +
Sbjct: 20  LAAPLQSCGRAGDLRLGRCLHARLVLSGAAAASTFLANHLITMYSHCADVPSAVRLFDAM 79

Query: 234 QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGI 293
            R ++V+W  ++SG  Q+     AL  F  M   G+ P      +   A         G 
Sbjct: 80  PRPNLVSWTTLVSGLTQNSMHRDALAAFSSMCRAGLVPTQFALSSAARAAAALAARHAGA 139

Query: 294 QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 338
           Q     V   G  A+    + + D+  ++G LVEA  +  +MP K
Sbjct: 140 QLHCVGVR-LGFDAELFVASNLADMYSKSGLLVEACRVFDQMPQK 183


>gi|297806459|ref|XP_002871113.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297316950|gb|EFH47372.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 637

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 212/553 (38%), Positives = 334/553 (60%), Gaps = 15/553 (2%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M ++  V  ++VL     + G ++ A+++FD + +  +VS+N M+     N  +   A D
Sbjct: 92  MELQGDVTLSNVLINAYSKCGFVELARQVFDGMLERSLVSWNTMIGLYTRNRMES-EALD 150

Query: 61  FFQRLPIK----DTASWNTMISGFVQKKNMAKARDLF-LAMPEK---NSVSWSAMISGYI 112
            F  +  +       + ++++S      +  + + L  L+M      N    +A++  Y 
Sbjct: 151 IFWEMRNEGFKFSEFTISSVLSACGANCDALECKKLHCLSMKTSLDLNLYVGTALLDLYA 210

Query: 113 ECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNA 172
           +CG ++ AV++F+    KS V W++M++GY     V++   E+ L L R    + +  N 
Sbjct: 211 KCGMINDAVQVFESMQDKSSVTWSSMVAGY-----VQSKNYEEALLLYRRAQRMSLEQNQ 265

Query: 173 SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLE 232
            +LSSV+  CS+L++L  GKQ+H ++ KS    +    +  + MY KCG L ++  +F E
Sbjct: 266 FTLSSVICACSNLAALIEGKQMHAVIRKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSE 325

Query: 233 IQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 292
           +Q K++  WN +ISG+A+H + ++ + LF+KM+ +GM P+ +TF +LL  C H GLV+ G
Sbjct: 326 VQEKNIELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVEEG 385

Query: 293 IQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACR 352
            ++F  M   YG++    HY+CMVD+LGRAG L EA +LIK +PF+P  +I+G+LL++CR
Sbjct: 386 RRFFKLMRTTYGLSPNVVHYSCMVDILGRAGLLSEAYELIKSIPFEPTASIWGSLLASCR 445

Query: 353 VHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPG 412
           V K L+LAE AA  LF L P N AG +V L+NIYAA K+W+++A+ R  +++ +V K+ G
Sbjct: 446 VCKNLELAEVAAKKLFELEPEN-AGNHVLLSNIYAANKQWEEIAKSRKLLRDCDVKKVRG 504

Query: 413 YSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQ 472
            SWI++   VH FR G+  HP +  I   L  L   ++  GY P +E  LH V    KE+
Sbjct: 505 QSWIDIKDKVHIFRVGESSHPRIREICTMLDNLVIELRKFGYKPSVEHELHDVEIGKKEE 564

Query: 473 LLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFH 532
           LL+ HSEKLA+ FGL+ +P G+ +R+ KNLR+C DCH   K  S   +R IIVRD  RFH
Sbjct: 565 LLMQHSEKLALVFGLMCLPEGSTVRIMKNLRICVDCHEFMKAASMATRRFIIVRDANRFH 624

Query: 533 HFKDGTCSCGDYW 545
           HF DG CSCG++W
Sbjct: 625 HFSDGHCSCGEFW 637



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 77/169 (45%), Gaps = 1/169 (0%)

Query: 171 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 230
            AS    +L  C+   ++   K  H    +  L  D T    LI+ Y KCG +E A ++F
Sbjct: 62  QASDFIEILQLCARNGAVMEAKACHGKTMRMELQGDVTLSNVLINAYSKCGFVELARQVF 121

Query: 231 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVD 290
             +  + +V+WN MI  Y ++    +AL +F +M++EG K    T  ++L AC  A    
Sbjct: 122 DGMLERSLVSWNTMIGLYTRNRMESEALDIFWEMRNEGFKFSEFTISSVLSACG-ANCDA 180

Query: 291 LGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKP 339
           L  +    +     +       T ++DL  + G + +AV + + M  K 
Sbjct: 181 LECKKLHCLSMKTSLDLNLYVGTALLDLYAKCGMINDAVQVFESMQDKS 229


>gi|357468161|ref|XP_003604365.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355505420|gb|AES86562.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 874

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 214/543 (39%), Positives = 316/543 (58%), Gaps = 21/543 (3%)

Query: 7   VNWNSVLAGFAKQRGKLKDAQELFDKIPQ------PDVVSYNIMLS-CILLNSDDVVAAF 59
           V WN VL+G+ + + + ++++ LF ++ +      P+ V+  +MLS C  L   D+V   
Sbjct: 203 VTWNVVLSGYNRFK-RYEESKRLFIEMEKKCECVSPNSVTLVLMLSACSKLK--DLVGGK 259

Query: 60  DFFQRLPIKDTAS-----WNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIEC 114
             + +   +          N +I  F     M  AR +F  M  ++ +SW+++++G+   
Sbjct: 260 CIYNKYIKEGIVEPNLILENALIDMFASCGEMDAARGVFDEMKTRDVISWTSIVTGFANT 319

Query: 115 GQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASS 174
            ++D A + F   P +  V+WTAMI GY++    +     + L L R M    ++P+  +
Sbjct: 320 CRIDLARKYFDQMPERDYVSWTAMIDGYLRMNRFK-----EVLTLFRDMQMSNVKPDEFT 374

Query: 175 LSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ 234
           + S+L  C+HL +L+LG+     + K+ +  DT     LI MY KCG++E A K+F E+Q
Sbjct: 375 MVSILTACAHLGALELGEWAKTYIDKNKIKNDTFIGNALIDMYFKCGNVEKAKKIFNEMQ 434

Query: 235 RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ 294
           +KD  TW AMI G A +G GE+AL +F  M +  + PD IT++ ++ AC H GLV  G  
Sbjct: 435 KKDKFTWTAMIVGLANNGHGEEALTMFSYMLEASVTPDEITYIGVMCACTHVGLVAKGKH 494

Query: 295 YFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVH 354
           +F +M   +GI     HY CMVDLLGRAG L EA+++I  MP KP   ++G+LL ACRVH
Sbjct: 495 FFSNMAVQHGIKPNLTHYGCMVDLLGRAGHLKEALEVIMNMPVKPNSIVWGSLLGACRVH 554

Query: 355 KRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYS 414
           K + LAE AA  +  L P N A  YV L NIYAA KKW ++  +R  M E  + K+PG S
Sbjct: 555 KNVQLAEMAANEILELEPENGA-VYVLLCNIYAACKKWKNLHNVRKMMMERGIKKIPGCS 613

Query: 415 WIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLL 474
            +E+  +V+EF +GD+ HP+   I+ KL+ +++ +  AGY PD       VGEE KE  L
Sbjct: 614 LMEMNGIVYEFVAGDKSHPQSKEIYAKLENMKQDLSNAGYSPDTSEVFLDVGEEDKETAL 673

Query: 475 LFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHF 534
             HSEKLAIA+ LI    G  IR+ KNLR+C DCH     +S +  RE+IVRD TRFHHF
Sbjct: 674 YMHSEKLAIAYALISSGKGVTIRIVKNLRMCVDCHHMAMVVSKVYNRELIVRDKTRFHHF 733

Query: 535 KDG 537
           + G
Sbjct: 734 RHG 736



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 88/369 (23%), Positives = 160/369 (43%), Gaps = 54/369 (14%)

Query: 17  AKQRGKLKDAQELFDKIPQPDVVSYNIMLSCI--LLNSDDVVAAFDFFQRLPIK-DTASW 73
            K+ G +  A+++FD+IPQP V  +N M+     +  S+  V+ +       IK D  ++
Sbjct: 79  TKESGDVYYARKVFDEIPQPSVFIWNTMIKGYSRINCSESGVSLYKLMLVHNIKPDGFTF 138

Query: 74  NTMISGFVQKKNMAKARDLF-----LAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAP 128
             ++ GF +   +   + L          + N       I  +  CG ++ A ++F +  
Sbjct: 139 PFLLKGFTKDMALKYGKVLLNHAVIHGFLDSNLFVQKGFIHLFSLCGLVNYARKIFDMGD 198

Query: 129 VKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLG-----IRPNASSLSSVLLGCS 183
              VV W  ++SGY +F   E S         R+ I +      + PN+ +L  +L  CS
Sbjct: 199 GWEVVTWNVVLSGYNRFKRYEES--------KRLFIEMEKKCECVSPNSVTLVLMLSACS 250

Query: 184 HLSSLQLGKQVHQLVFKSPLCKDTTAL-TPLISMYCKCGDLEDACKLFLEIQRKDV---- 238
            L  L  GK ++    K  + +    L   LI M+  CG+++ A  +F E++ +DV    
Sbjct: 251 KLKDLVGGKCIYNKYIKEGIVEPNLILENALIDMFASCGEMDAARGVFDEMKTRDVISWT 310

Query: 239 ---------------------------VTWNAMISGYAQHGKGEKALRLFDKMKDEGMKP 271
                                      V+W AMI GY +  + ++ L LF  M+   +KP
Sbjct: 311 SIVTGFANTCRIDLARKYFDQMPERDYVSWTAMIDGYLRMNRFKEVLTLFRDMQMSNVKP 370

Query: 272 DSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDL 331
           D  T V++L AC H G ++LG ++  + ++   I         ++D+  + G + +A  +
Sbjct: 371 DEFTMVSILTACAHLGALELG-EWAKTYIDKNKIKNDTFIGNALIDMYFKCGNVEKAKKI 429

Query: 332 IKKMPFKPQ 340
             +M  K +
Sbjct: 430 FNEMQKKDK 438



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 72/301 (23%), Positives = 136/301 (45%), Gaps = 19/301 (6%)

Query: 113 ECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNA 172
           E G +  A ++F   P  SV  W  MI GY +      + +E G+ L ++M+   I+P+ 
Sbjct: 81  ESGDVYYARKVFDEIPQPSVFIWNTMIKGYSRI-----NCSESGVSLYKLMLVHNIKPDG 135

Query: 173 SSLSSVLLGCSHLSSLQLGKQV-HQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFL 231
            +   +L G +   +L+ GK + +  V    L  +       I ++  CG +  A K+F 
Sbjct: 136 FTFPFLLKGFTKDMALKYGKVLLNHAVIHGFLDSNLFVQKGFIHLFSLCGLVNYARKIFD 195

Query: 232 EIQRKDVVTWNAMISGYAQHGKGEKALRLFDKM--KDEGMKPDSITFVALLLACNHAGLV 289
                +VVTWN ++SGY +  + E++ RLF +M  K E + P+S+T V +L AC+    +
Sbjct: 196 MGDGWEVVTWNVVLSGYNRFKRYEESKRLFIEMEKKCECVSPNSVTLVLMLSACSKLKDL 255

Query: 290 DLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK---PQPAIFGT 346
             G   ++  + +  +         ++D+    G++  A  +  +M  +      +I   
Sbjct: 256 VGGKCIYNKYIKEGIVEPNLILENALIDMFASCGEMDAARGVFDEMKTRDVISWTSIVTG 315

Query: 347 LLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENN 406
             + CR+    DLA       F+  P      +  + + Y  M ++ +V  +   M+ +N
Sbjct: 316 FANTCRI----DLAR----KYFDQMPERDYVSWTAMIDGYLRMNRFKEVLTLFRDMQMSN 367

Query: 407 V 407
           V
Sbjct: 368 V 368



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 63/295 (21%), Positives = 131/295 (44%), Gaps = 23/295 (7%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCIL-LNS-DDVVAA 58
           M  +  ++W S++ GFA    ++  A++ FD++P+ D VS+  M+   L +N   +V+  
Sbjct: 301 MKTRDVISWTSIVTGFANT-CRIDLARKYFDQMPERDYVSWTAMIDGYLRMNRFKEVLTL 359

Query: 59  FDFFQRLPIKDTASWNTMISGFVQKKNMAKAR--DLFLAMPEKNSVS-----WSAMISGY 111
           F   Q   +K      TM+S      ++      +      +KN +       +A+I  Y
Sbjct: 360 FRDMQMSNVKPDEF--TMVSILTACAHLGALELGEWAKTYIDKNKIKNDTFIGNALIDMY 417

Query: 112 IECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPN 171
            +CG ++KA ++F     K    WTAMI      G   N   E+ L +   M+   + P+
Sbjct: 418 FKCGNVEKAKKIFNEMQKKDKFTWTAMI-----VGLANNGHGEEALTMFSYMLEASVTPD 472

Query: 172 ASSLSSVLLGCSHLSSLQLGKQ-VHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 230
             +   V+  C+H+  +  GK     +  +  +  + T    ++ +  + G L++A ++ 
Sbjct: 473 EITYIGVMCACTHVGLVAKGKHFFSNMAVQHGIKPNLTHYGCMVDLLGRAGHLKEALEVI 532

Query: 231 LEIQRK-DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 284
           + +  K + + W +++     H    K ++L +   +E ++ +       +L CN
Sbjct: 533 MNMPVKPNSIVWGSLLGACRVH----KNVQLAEMAANEILELEPENGAVYVLLCN 583



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/126 (31%), Positives = 59/126 (46%), Gaps = 5/126 (3%)

Query: 157 LKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISM 216
           L L RM+    +     S  S+L  C+ +  +    Q+H    K+ L  +   LT +I  
Sbjct: 20  LFLKRMISNTPLHSFVKSPISLLETCNTMYEIN---QIHSQTIKTGLSSNHLFLTKVIIF 76

Query: 217 YC--KCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSI 274
            C  + GD+  A K+F EI +  V  WN MI GY++    E  + L+  M    +KPD  
Sbjct: 77  CCTKESGDVYYARKVFDEIPQPSVFIWNTMIKGYSRINCSESGVSLYKLMLVHNIKPDGF 136

Query: 275 TFVALL 280
           TF  LL
Sbjct: 137 TFPFLL 142


>gi|296087599|emb|CBI34855.3| unnamed protein product [Vitis vinifera]
          Length = 956

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 227/567 (40%), Positives = 322/567 (56%), Gaps = 31/567 (5%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQ--------------PDVVSYNIMLS 46
           M V+  V W+S++A +    G+  +A E+FD++ Q              P V     + S
Sbjct: 399 MIVRDVVIWSSMIAAYGIH-GRGGEALEIFDQMIQVMQGITSCYQISMQPQVQPPLAITS 457

Query: 47  CILLNSDDVVAAFDFFQRLPIKDTAS-WNTMISGFVQKKNMAKARDLFLAMPEKNSVSWS 105
           C L           F+ R   +     W    +   Q  +M+K+ ++F    + +S   +
Sbjct: 458 CTLATHIPWKVK-AFYMRAHFRWLGHFWEIFPTYPFQAADMSKS-NIFAYGLQYDSRILT 515

Query: 106 AMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIG 165
                Y+   ++D A  +F+  P      W  MI G+   G   +S     L+L   M+ 
Sbjct: 516 KFAIMYVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFATDGRFLSS-----LELYSKMME 570

Query: 166 LGIRPNAS-------SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYC 218
            G++P+ S       S+ SVLL C +L +L+ G+  H  V ++    D    T ++ MY 
Sbjct: 571 KGLKPDNSGVIPNRVSILSVLLACGNLGALRKGEWFHSYVIQTGFEFDILVATAIMDMYS 630

Query: 219 KCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVA 278
           KCG L+ A  LF E   KD+V W+AMI+ Y  HG G KA+ LFD+M   G++P  +TF  
Sbjct: 631 KCGSLDLARCLFDETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQMVKAGVRPSHVTFTC 690

Query: 279 LLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 338
           +L AC+H+GL++ G  YF  M  ++ IA K  +Y CMVDLLGRAG+L EAVDLI+ MP +
Sbjct: 691 VLSACSHSGLLEEGKMYFQLMTEEFVIARKLSNYACMVDLLGRAGQLSEAVDLIENMPVE 750

Query: 339 PQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARI 398
           P  +I+G+LL ACR+H  LDLAE  A +LF+L+P + AG +V L+NIYAA  +W++V ++
Sbjct: 751 PDASIWGSLLGACRIHNNLDLAEKIADHLFHLDPVH-AGYHVLLSNIYAAKSRWNEVEKV 809

Query: 399 RLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDL 458
           R  M      K+ G+S +E    VH+F  GDR HP+   ++ KL+EL   MK  GYVP  
Sbjct: 810 RKMMARRGANKIQGFSLVEYDNQVHKFGVGDRSHPQWEKLYAKLEELAAPMKHLGYVPLT 869

Query: 459 EFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAI 518
           +F LH + EE KE  L +HSE+LAIAFGLI    GT +R+ KNLR+CGDCH A K IS I
Sbjct: 870 DFVLHDIEEEAKEAALSYHSERLAIAFGLINTSPGTTLRITKNLRICGDCHNAIKLISKI 929

Query: 519 EKREIIVRDTTRFHHFKDGTCSCGDYW 545
             R I+VRD  RFH F+DG CSCGDYW
Sbjct: 930 VNRVILVRDMHRFHRFEDGVCSCGDYW 956



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 87/268 (32%), Positives = 141/268 (52%), Gaps = 16/268 (5%)

Query: 6   TVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLN-----SDDVVAAFD 60
           TV W S++ G+ +Q    ++A  LF ++   D    ++ L   LLN       + +AA +
Sbjct: 170 TVLWTSMVTGY-QQNNDPEEALALFSQMVMMDCFDGDLPLVNSLLNLYAKTGCEKIAA-N 227

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISGYIECGQ 116
            F ++P KD  SW+TMI+ +   +   +A +LF  M EK    NSV+  + +        
Sbjct: 228 LFSKMPEKDVISWSTMIACYANNEAANEALNLFHEMIEKRFEPNSVTVVSALQACAVSRN 287

Query: 117 LDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLS 176
           L++  ++ K+A  K VV+W A++SGY      +N  A   + + R M+  GI+P+A ++ 
Sbjct: 288 LEEGKKIHKIAVWKDVVSWVALLSGY-----AQNGMAYKSMGVFRNMLSDGIQPDAVAVV 342

Query: 177 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK 236
            +L   S L   Q    +H  V +S    +      LI +Y KCG L DA KLF  +  +
Sbjct: 343 KILAASSELGIFQQALCLHGYVVRSGFNSNVFVGASLIELYSKCGSLGDAVKLFKGMIVR 402

Query: 237 DVVTWNAMISGYAQHGKGEKALRLFDKM 264
           DVV W++MI+ Y  HG+G +AL +FD+M
Sbjct: 403 DVVIWSSMIAAYGIHGRGGEALEIFDQM 430



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 77/308 (25%), Positives = 138/308 (44%), Gaps = 50/308 (16%)

Query: 54  DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSW-----SAMI 108
           + +  F+ FQR    DT  W +M++G+ Q  +  +A  LF  M   +         ++++
Sbjct: 157 EALKVFEEFQR---PDTVLWTSMVTGYQQNNDPEEALALFSQMVMMDCFDGDLPLVNSLL 213

Query: 109 SGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGI 168
           + Y + G    A  LF   P K V++W+ MI+ Y       N  A + L L   MI    
Sbjct: 214 NLYAKTGCEKIAANLFSKMPEKDVISWSTMIACY-----ANNEAANEALNLFHEMIEKRF 268

Query: 169 RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK 228
            PN+ ++ S L  C+   +L+ GK++H++                               
Sbjct: 269 EPNSVTVVSALQACAVSRNLEEGKKIHKIAV----------------------------- 299

Query: 229 LFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGL 288
                  KDVV+W A++SGYAQ+G   K++ +F  M  +G++PD++  V +L A +  G+
Sbjct: 300 ------WKDVVSWVALLSGYAQNGMAYKSMGVFRNMLSDGIQPDAVAVVKILAASSELGI 353

Query: 289 VDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLL 348
               +     +V   G  +       +++L  + G L +AV L K M  +    I+ +++
Sbjct: 354 FQQALCLHGYVVRS-GFNSNVFVGASLIELYSKCGSLGDAVKLFKGMIVR-DVVIWSSMI 411

Query: 349 SACRVHKR 356
           +A  +H R
Sbjct: 412 AAYGIHGR 419



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 71/282 (25%), Positives = 124/282 (43%), Gaps = 68/282 (24%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLS--CILLNSDDVVAAF------------DFFQRLP 66
             L+ A+++FD+ P P+V  +N  L   C     ++ +  F            +F   + 
Sbjct: 50  ASLQAARKVFDETPHPNVHLWNSTLRSYCREKQWEETLRLFHLMICTAGEAPDNFTIPIA 109

Query: 67  IKDTASWNTM-----ISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAV 121
           +K  A    +     I GF  KKN     D+F+          SA++  Y +CGQ+ +A+
Sbjct: 110 LKACAGLRMLELGKVIHGFA-KKNDEIGSDMFVG---------SALVELYSKCGQMGEAL 159

Query: 122 ELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLG 181
           ++F+       V WT+M++GY      +N+  E+ L L   M              V++ 
Sbjct: 160 KVFEEFQRPDTVLWTSMVTGYQ-----QNNDPEEALALFSQM--------------VMMD 200

Query: 182 CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTW 241
           C                       D   +  L+++Y K G  + A  LF ++  KDV++W
Sbjct: 201 C--------------------FDGDLPLVNSLLNLYAKTGCEKIAANLFSKMPEKDVISW 240

Query: 242 NAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC 283
           + MI+ YA +    +AL LF +M ++  +P+S+T V+ L AC
Sbjct: 241 STMIACYANNEAANEALNLFHEMIEKRFEPNSVTVVSALQAC 282



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 59/226 (26%), Positives = 105/226 (46%), Gaps = 30/226 (13%)

Query: 193 QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHG 252
           Q+H  VFK+ +  DT   T L S+Y KC  L+ A K+F E    +V  WN+ +  Y +  
Sbjct: 22  QLHSQVFKTGILHDTFFATKLNSLYAKCASLQAARKVFDETPHPNVHLWNSTLRSYCREK 81

Query: 253 KGEKALRLFDKMK-DEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDH 311
           + E+ LRLF  M    G  PD+ T    L AC    +++LG          +G A K D 
Sbjct: 82  QWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELGKVI-------HGFAKKNDE 134

Query: 312 Y-------TCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLD--LAEF 362
                   + +V+L  + G++ EA+ + ++   +P   ++ ++++  + +   +  LA F
Sbjct: 135 IGSDMFVGSALVELYSKCGQMGEALKVFEEFQ-RPDTVLWTSMVTGYQQNNDPEEALALF 193

Query: 363 AAMNLFN------------LNPANAAGCYVQLANIYAAMKKWDDVA 396
           + M + +            LN     GC    AN+++ M + D ++
Sbjct: 194 SQMVMMDCFDGDLPLVNSLLNLYAKTGCEKIAANLFSKMPEKDVIS 239


>gi|347954534|gb|AEP33767.1| organelle transcript processing 82, partial [Matthiola incana]
          Length = 694

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 223/575 (38%), Positives = 330/575 (57%), Gaps = 52/575 (9%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
           ++ L     Q G+L+DA+++FD     DVVSY  +++   ++   + +A   F  +P KD
Sbjct: 127 HTSLISMYAQNGRLEDARKVFDISSHRDVVSYTALIAG-YVSRGYIESAQKLFDEIPGKD 185

Query: 70  TASWNTMISGFVQKKNMAKARDLFLAM-------PEKNSV-------------------- 102
             SWN MISG+V+  N  +A +LF  M       P+++++                    
Sbjct: 186 VVSWNAMISGYVETGNYKEALELFKEMMMMTNVRPDESTMVTVVSACAQSDSIELGRHVH 245

Query: 103 SW-------------SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVE 149
           SW             +A+I  Y + G+++ A ELF     K V++W  +I GY      +
Sbjct: 246 SWINDHGFASNLKIVNALIDLYSKFGEVETACELFDGLWNKDVISWNTLIGGYTHMNLYK 305

Query: 150 NSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLV---FKSPLCKD 206
                + L L + M+  G  PN  ++ S+L  C+HL ++ +G+ +H  +    K  +   
Sbjct: 306 -----EALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYINKKLKGVVTNV 360

Query: 207 TTALTPLISMYCKCGDLEDACKLF-LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMK 265
           ++  T LI MY KCGD++ A ++F   +  + + TWNAMISG+A HG+   A  +F +M+
Sbjct: 361 SSLQTSLIDMYAKCGDIDAAQQVFDSSMSNRSLSTWNAMISGFAMHGRANAAFDIFSRMR 420

Query: 266 DEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKL 325
             G++PD ITFV LL AC+H+G++DLG   F SM   Y I  K +HY CM+DLLG +G  
Sbjct: 421 MNGIEPDDITFVGLLSACSHSGMLDLGRNIFRSMTRGYEITPKLEHYGCMIDLLGHSGLF 480

Query: 326 VEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANI 385
            EA ++I  MP +P   I+ +LL AC++H  L+L E  A  L  + P N+ G YV L+NI
Sbjct: 481 KEAEEMINTMPMEPDGVIWCSLLKACKIHGNLELGESFAKKLIKIEPGNS-GSYVLLSNI 539

Query: 386 YAAMKKWDDVARIRLSMKENNVVK-MPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKE 444
           YAA  +W++VA+IR  + +  + K +PG S IE+ +VVHEF  GD++HP+   I+  L+E
Sbjct: 540 YAAAGRWNEVAKIRALLNDKGMKKKVPGCSSIEIDSVVHEFIIGDKLHPQNREIYGMLEE 599

Query: 445 LEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRV 504
           +E  ++ AG+VPD    L  + EE +E  L  HSEKLAIAFGLI    GT + + KNLRV
Sbjct: 600 MEVLLEEAGFVPDTSEVLQEMEEEWREGALRHHSEKLAIAFGLISTKPGTKLTIMKNLRV 659

Query: 505 CGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTC 539
           C +CH ATK IS I KREII RD TRF HF+DG C
Sbjct: 660 CKNCHEATKLISKIYKREIIARDRTRFXHFRDGVC 694



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/244 (27%), Positives = 113/244 (46%), Gaps = 38/244 (15%)

Query: 120 AVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVL 179
           A+ +F      +++ W  M  G+       +S     LKL  +MI LG+ P++ +   +L
Sbjct: 42  AISVFDTIQEPNLLIWNTMFRGH-----ALSSDPVSALKLYLVMISLGLLPDSYTFPFLL 96

Query: 180 LGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVV 239
             C+     + G+Q+H  V K     D    T LISMY + G LEDA K+F     +DVV
Sbjct: 97  KSCAKSKIRKEGQQIHGHVLKLGFDLDIYVHTSLISMYAQNGRLEDARKVFDISSHRDVV 156

Query: 240 TWNAMISGYAQHGKGEKALRLFDKM--KD------------------------------E 267
           ++ A+I+GY   G  E A +LFD++  KD                               
Sbjct: 157 SYTALIAGYVSRGYIESAQKLFDEIPGKDVVSWNAMISGYVETGNYKEALELFKEMMMMT 216

Query: 268 GMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVE 327
            ++PD  T V ++ AC  +  ++LG ++  S +ND+G A+       ++DL  + G++  
Sbjct: 217 NVRPDESTMVTVVSACAQSDSIELG-RHVHSWINDHGFASNLKIVNALIDLYSKFGEVET 275

Query: 328 AVDL 331
           A +L
Sbjct: 276 ACEL 279


>gi|6706414|emb|CAB66100.1| putative protein [Arabidopsis thaliana]
          Length = 803

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 220/547 (40%), Positives = 305/547 (55%), Gaps = 58/547 (10%)

Query: 51  NSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK-----NSVSWS 105
           N   V++    F  +  +    WN MI+G+ Q ++  +A  LF+ M E      NS + +
Sbjct: 263 NCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMA 322

Query: 106 AMI-----SG------------------------------YIECGQLDKAVELFKVAPVK 130
            ++     SG                              Y   G++D A+ +F     +
Sbjct: 323 GVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDR 382

Query: 131 SVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGL-----------GIRPNASSLSSVL 179
            +V W  MI+GY     V +   ED L LL  M  L            ++PN+ +L ++L
Sbjct: 383 DLVTWNTMITGY-----VFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTIL 437

Query: 180 LGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVV 239
             C+ LS+L  GK++H    K+ L  D    + L+ MY KCG L+ + K+F +I +K+V+
Sbjct: 438 PSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVI 497

Query: 240 TWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSM 299
           TWN +I  Y  HG G++A+ L   M  +G+KP+ +TF+++  AC+H+G+VD G++ F  M
Sbjct: 498 TWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVM 557

Query: 300 VNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPA-IFGTLLSACRVHKRLD 358
             DYG+    DHY C+VDLLGRAG++ EA  L+  MP     A  + +LL A R+H  L+
Sbjct: 558 KPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLE 617

Query: 359 LAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEV 418
           + E AA NL  L P N A  YV LANIY++   WD    +R +MKE  V K PG SWIE 
Sbjct: 618 IGEIAAQNLIQLEP-NVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIEH 676

Query: 419 GTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHS 478
           G  VH+F +GD  HP+   +   L+ L +RM+  GYVPD    LH V E+ KE LL  HS
Sbjct: 677 GDEVHKFVAGDSSHPQSEKLSGYLETLWERMRKEGYVPDTSCVLHNVEEDEKEILLCGHS 736

Query: 479 EKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGT 538
           EKLAIAFG++    GT IRV KNLRVC DCH ATK+IS I  REII+RD  RFH FK+GT
Sbjct: 737 EKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLATKFISKIVDREIILRDVRRFHRFKNGT 796

Query: 539 CSCGDYW 545
           CSCGDYW
Sbjct: 797 CSCGDYW 803



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 83/341 (24%), Positives = 155/341 (45%), Gaps = 17/341 (4%)

Query: 6   TVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRL 65
           +V   + L    ++ G      ++FD+I + + VS+N ++S +       +A   F   L
Sbjct: 45  SVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCML 104

Query: 66  PIKDTASWNTMISGFVQKKNMAKARDLFLAMP---------EKNSVSWSAMISGYIECGQ 116
                 S  T++S      N+     L +            E NS   + +++ Y + G+
Sbjct: 105 DENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGELNSFIINTLVAMYGKLGK 164

Query: 117 LDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLS 176
           L  +  L      + +V W  ++S        +N    + L+ LR M+  G+ P+  ++S
Sbjct: 165 LASSKVLLGSFGGRDLVTWNTVLSSL-----CQNEQLLEALEYLREMVLEGVEPDEFTIS 219

Query: 177 SVLLGCSHLSSLQLGKQVHQLVFKS-PLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR 235
           SVL  CSHL  L+ GK++H    K+  L +++   + L+ MYC C  +    ++F  +  
Sbjct: 220 SVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFD 279

Query: 236 KDVVTWNAMISGYAQHGKGEKALRLFDKMKDE-GMKPDSITFVALLLACNHAGLVDLGIQ 294
           + +  WNAMI+GY+Q+   ++AL LF  M++  G+  +S T   ++ AC  +G      +
Sbjct: 280 RKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRK-E 338

Query: 295 YFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335
                V   G+         ++D+  R GK+  A+ +  KM
Sbjct: 339 AIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKM 379



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 60/204 (29%), Positives = 103/204 (50%), Gaps = 6/204 (2%)

Query: 163 MIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDT-TALTPLISMYCKCG 221
           MI LGI+P+  +  ++L   + L  ++LGKQ+H  V+K     D+ T    L+++Y KCG
Sbjct: 1   MIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCG 60

Query: 222 DLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLL 281
           D     K+F  I  ++ V+WN++IS      K E AL  F  M DE ++P S T V+++ 
Sbjct: 61  DFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVT 120

Query: 282 ACNHAGLVDLGIQYFDSMVNDYGIAAKPDH---YTCMVDLLGRAGKLVEAVDLIKKMPFK 338
           AC++  + + G+      V+ YG+     +      +V + G+ GKL  +  L+     +
Sbjct: 121 ACSNLPMPE-GLM-MGKQVHAYGLRKGELNSFIINTLVAMYGKLGKLASSKVLLGSFGGR 178

Query: 339 PQPAIFGTLLSACRVHKRLDLAEF 362
                   L S C+  + L+  E+
Sbjct: 179 DLVTWNTVLSSLCQNEQLLEALEY 202


>gi|224123788|ref|XP_002319164.1| predicted protein [Populus trichocarpa]
 gi|222857540|gb|EEE95087.1| predicted protein [Populus trichocarpa]
          Length = 989

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 214/554 (38%), Positives = 315/554 (56%), Gaps = 17/554 (3%)

Query: 3   VKTTVNWN----SVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNS--DDVV 56
           +KT   +N    SVL     + GKL  A  +   + + DVVS+  ++S    ++   + +
Sbjct: 442 IKTGFQFNVYVCSVLIDMYAKHGKLDTAHVILRTLTEDDVVSWTALISGYAQHNLFAEAL 501

Query: 57  AAF-DFFQRLPIKDTASWNTMISGFVQKKNMAKARDL----FLAMPEKNSVSWSAMISGY 111
             F +   R    D   +++ IS     + + + R +    +++   ++    +A++S Y
Sbjct: 502 KHFKEMLNRGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYVSGYSEDLSIGNALVSLY 561

Query: 112 IECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPN 171
             CG++ +A   F+    K  ++W  +ISG+ + GY      ED LK+   M    +  +
Sbjct: 562 ARCGRIKEAYLEFEKIDAKDSISWNGLISGFAQSGY-----CEDALKVFAQMNRAKLEAS 616

Query: 172 ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFL 231
             +  S +   +++++++ GKQ+H ++ K     D      LI+ Y KCG +EDA + F 
Sbjct: 617 FFTFGSAVSAAANIANIKQGKQIHAMIIKRGFDSDIEVSNALITFYAKCGSIEDARREFC 676

Query: 232 EIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDL 291
           E+  K+ V+WNAMI+GY+QHG G +A+ LF+KMK  G  P+ +TFV +L AC+H GLV  
Sbjct: 677 EMPEKNDVSWNAMITGYSQHGYGNEAVNLFEKMKQVGEMPNHVTFVGVLSACSHVGLVTK 736

Query: 292 GIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSAC 351
           G+ YF+SM  ++G+  KP HY C+VDL+ RAG L  A   I++MP +P   I+ TLLSAC
Sbjct: 737 GLGYFESMSKEHGLVPKPAHYACVVDLISRAGFLSRARKFIEEMPIEPDATIWRTLLSAC 796

Query: 352 RVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMP 411
            VHK +++ EFAA +L  L P ++A  YV L+N+YA   KWD   + R  M+   V K P
Sbjct: 797 TVHKNVEVGEFAAQHLLELEPEDSA-TYVLLSNMYAVSGKWDCRDQTRQMMRNRGVKKEP 855

Query: 412 GYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKE 471
           G SWIEV   VH F  GDR+HP    I+E L EL K+    GY  D    L+ V +E K+
Sbjct: 856 GRSWIEVKNSVHAFYVGDRLHPLADKIYEFLAELNKKAAEIGYFQDRYSLLNDVEQEQKD 915

Query: 472 QLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRF 531
             +  HSEKLAI FGL+ +    PI V KNLRVC DCH   K++S I  R IIVRD  RF
Sbjct: 916 PTVYIHSEKLAITFGLLSLSDTVPIHVMKNLRVCKDCHSWIKFVSKISNRAIIVRDAYRF 975

Query: 532 HHFKDGTCSCGDYW 545
           HHF+ G CSC DYW
Sbjct: 976 HHFEGGICSCKDYW 989



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 120/440 (27%), Positives = 186/440 (42%), Gaps = 86/440 (19%)

Query: 54  DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKN------------- 100
           D+      F+ +P +   SW+ +ISGF++KK   +  DLF  M E+N             
Sbjct: 60  DLDGVVKVFEDMPNRSVRSWDKIISGFMEKKMSNRVLDLFSCMIEENVSPTEISFASVLR 119

Query: 101 -------SVSWSAMISGYIEC--------------------GQLDKAVELFKVAPVKSVV 133
                   + ++  I   I C                    G +  A ++F     K  V
Sbjct: 120 ACSGHRIGIRYAEQIHARIICHGLLCSPIISNPLIGLYAKNGLIISARKVFDNLCTKDSV 179

Query: 134 AWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ 193
           +W AMISG+ + GY      E+ + L   M   GI P     SSVL GC+ +    +G+Q
Sbjct: 180 SWVAMISGFSQNGY-----EEEAIHLFCEMHTAGIFPTPYVFSSVLSGCTKIKLFDVGEQ 234

Query: 194 VHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGK 253
           +H LVFK     +T     L+++Y +  +   A K+F ++Q KD V++N++ISG AQ G 
Sbjct: 235 LHALVFKYGSSLETYVCNALVTLYSRMPNFVSAEKVFSKMQSKDEVSFNSLISGLAQQGF 294

Query: 254 GEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAA------ 307
            + AL LF KMK + +KPD +T  +LL AC   G +  G Q   S V   GI++      
Sbjct: 295 SDGALELFTKMKRDYLKPDCVTVASLLSACASNGALCKGEQ-LHSYVIKAGISSDMIVEG 353

Query: 308 ------------KPDH-------------YTCMVDLLGRAGKLVEAVDLIKKMPFK---P 339
                       K  H             +  M+   G+   L E+  + ++M  K   P
Sbjct: 354 ALLDLYVNCSDIKTAHEMFLTAQTENVVLWNVMLVAFGKLDNLSESFRIFRQMQIKGLIP 413

Query: 340 QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLN-PANAAGCYVQLANIYAAMKKWDDVARI 398
               + ++L  C     LDL E     +       N   C V L ++YA   K D    I
Sbjct: 414 NQFTYPSILRTCTSVGALDLGEQIHTQVIKTGFQFNVYVCSV-LIDMYAKHGKLDTAHVI 472

Query: 399 RLSMKENNVVK----MPGYS 414
             ++ E++VV     + GY+
Sbjct: 473 LRTLTEDDVVSWTALISGYA 492



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 90/325 (27%), Positives = 154/325 (47%), Gaps = 23/325 (7%)

Query: 26  AQELFDKIPQPDVVSYNIMLSCILLN--SDDVVAAFDFFQRLPIK-DTASWNTMISGFVQ 82
           A+++F K+   D VS+N ++S +     SD  +  F   +R  +K D  +  +++S    
Sbjct: 267 AEKVFSKMQSKDEVSFNSLISGLAQQGFSDGALELFTKMKRDYLKPDCVTVASLLSACAS 326

Query: 83  KKNMAKARDL----FLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAM 138
              + K   L      A    + +   A++  Y+ C  +  A E+F  A  ++VV W  M
Sbjct: 327 NGALCKGEQLHSYVIKAGISSDMIVEGALLDLYVNCSDIKTAHEMFLTAQTENVVLWNVM 386

Query: 139 ISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLV 198
           +   + FG ++N    +  ++ R M   G+ PN  +  S+L  C+ + +L LG+Q+H  V
Sbjct: 387 L---VAFGKLDN--LSESFRIFRQMQIKGLIPNQFTYPSILRTCTSVGALDLGEQIHTQV 441

Query: 199 FKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKAL 258
            K+    +    + LI MY K G L+ A  +   +   DVV+W A+ISGYAQH    +AL
Sbjct: 442 IKTGFQFNVYVCSVLIDMYAKHGKLDTAHVILRTLTEDDVVSWTALISGYAQHNLFAEAL 501

Query: 259 RLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ-----YFDSMVNDYGIAAKPDHYT 313
           + F +M + G++ D+I F + + AC     ++ G Q     Y      D  I        
Sbjct: 502 KHFKEMLNRGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYVSGYSEDLSIG------N 555

Query: 314 CMVDLLGRAGKLVEAVDLIKKMPFK 338
            +V L  R G++ EA    +K+  K
Sbjct: 556 ALVSLYARCGRIKEAYLEFEKIDAK 580



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 82/253 (32%), Positives = 125/253 (49%), Gaps = 12/253 (4%)

Query: 101 SVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLL 160
           SV  + ++  Y   G LD  V++F+  P +SV +W  +ISG+M     E   +   L L 
Sbjct: 45  SVLCNKLVDVYFALGDLDGVVKVFEDMPNRSVRSWDKIISGFM-----EKKMSNRVLDLF 99

Query: 161 RMMIGLGIRPNASSLSSVLLGCS-HLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCK 219
             MI   + P   S +SVL  CS H   ++  +Q+H  +    L        PLI +Y K
Sbjct: 100 SCMIEENVSPTEISFASVLRACSGHRIGIRYAEQIHARIICHGLLCSPIISNPLIGLYAK 159

Query: 220 CGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVAL 279
            G +  A K+F  +  KD V+W AMISG++Q+G  E+A+ LF +M   G+ P    F ++
Sbjct: 160 NGLIISARKVFDNLCTKDSVSWVAMISGFSQNGYEEEAIHLFCEMHTAGIFPTPYVFSSV 219

Query: 280 LLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTC--MVDLLGRAGKLVEAVDLIKKMPF 337
           L  C    L D+G Q   ++V  YG  +  + Y C  +V L  R    V A  +  KM  
Sbjct: 220 LSGCTKIKLFDVGEQ-LHALVFKYG--SSLETYVCNALVTLYSRMPNFVSAEKVFSKMQS 276

Query: 338 KPQPAIFGTLLSA 350
           K + + F +L+S 
Sbjct: 277 KDEVS-FNSLISG 288



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 84/343 (24%), Positives = 161/343 (46%), Gaps = 51/343 (14%)

Query: 3   VKTTVNWNSVLAGFAKQRGKLKDAQELFDKI------PQPDVVSYNIMLSCILLNSDDVV 56
            K +V+W ++++GF+ Q G  ++A  LF ++      P P V S +++  C  +   DV 
Sbjct: 175 TKDSVSWVAMISGFS-QNGYEEEAIHLFCEMHTAGIFPTPYVFS-SVLSGCTKIKLFDVG 232

Query: 57  AAFD--FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIEC 114
                  F+     +T   N +++ + +  N   A  +F  M  K+ VS++++ISG  + 
Sbjct: 233 EQLHALVFKYGSSLETYVCNALVTLYSRMPNFVSAEKVFSKMQSKDEVSFNSLISGLAQQ 292

Query: 115 GQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASS 174
           G  D A+ELF           T M   Y+K                         P+  +
Sbjct: 293 GFSDGALELF-----------TKMKRDYLK-------------------------PDCVT 316

Query: 175 LSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ 234
           ++S+L  C+   +L  G+Q+H  V K+ +  D      L+ +Y  C D++ A ++FL  Q
Sbjct: 317 VASLLSACASNGALCKGEQLHSYVIKAGISSDMIVEGALLDLYVNCSDIKTAHEMFLTAQ 376

Query: 235 RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ 294
            ++VV WN M+  + +     ++ R+F +M+ +G+ P+  T+ ++L  C   G +DLG Q
Sbjct: 377 TENVVLWNVMLVAFGKLDNLSESFRIFRQMQIKGLIPNQFTYPSILRTCTSVGALDLGEQ 436

Query: 295 YFDSMVNDYGIAAKPDHYTC--MVDLLGRAGKLVEAVDLIKKM 335
               ++       + + Y C  ++D+  + GKL  A  +++ +
Sbjct: 437 IHTQVIK---TGFQFNVYVCSVLIDMYAKHGKLDTAHVILRTL 476



 Score = 65.1 bits (157), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 60/281 (21%), Positives = 111/281 (39%), Gaps = 44/281 (15%)

Query: 167 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 226
           GI  N  +   +L  C +  SL   K++H  + K     ++     L+ +Y   GDL+  
Sbjct: 5   GICANCQTYIWLLDLCLNSGSLVECKKLHGKILKLGFGNESVLCNKLVDVYFALGDLDGV 64

Query: 227 CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN-- 284
            K+F ++  + V +W+ +ISG+ +     + L LF  M +E + P  I+F ++L AC+  
Sbjct: 65  VKVFEDMPNRSVRSWDKIISGFMEKKMSNRVLDLFSCMIEENVSPTEISFASVLRACSGH 124

Query: 285 ----------HA------------------------GLVDLGIQYFDSMVNDYGIAAKPD 310
                     HA                        GL+    + FD++     ++    
Sbjct: 125 RIGIRYAEQIHARIICHGLLCSPIISNPLIGLYAKNGLIISARKVFDNLCTKDSVS---- 180

Query: 311 HYTCMVDLLGRAGKLVEAVDLIKKMPFK---PQPAIFGTLLSACRVHKRLDLAEFAAMNL 367
            +  M+    + G   EA+ L  +M      P P +F ++LS C   K  D+ E     +
Sbjct: 181 -WVAMISGFSQNGYEEEAIHLFCEMHTAGIFPTPYVFSSVLSGCTKIKLFDVGEQLHALV 239

Query: 368 FNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVV 408
           F    +        L  +Y+ M  +    ++   M+  + V
Sbjct: 240 FKYGSSLETYVCNALVTLYSRMPNFVSAEKVFSKMQSKDEV 280


>gi|359489786|ref|XP_002271725.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Vitis vinifera]
          Length = 852

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 226/590 (38%), Positives = 339/590 (57%), Gaps = 61/590 (10%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCI--LLNSDDVVAAFDFFQRLPI 67
           N+V+  +AK  G +++A ++F+++   DVVS+N M++    +   DD +  F+  +   I
Sbjct: 270 NAVVDMYAKC-GMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKI 328

Query: 68  K-DTASWNTMISGFVQKKNMAKARDLFLAM----PEKNSVSWSAMISG------------ 110
           + +  +W+ +I+G+ Q+    +A D+F  M     E N V+  +++SG            
Sbjct: 329 ELNVVTWSAVIAGYAQRGLGFEALDVFRQMRLCGSEPNVVTLVSLLSGCALAGTLLHGKE 388

Query: 111 ------------------------------YIECGQLDKAVELFKVAPVK--SVVAWTAM 138
                                         Y +C     A  +F + P K  SVV WT +
Sbjct: 389 THCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVL 448

Query: 139 ISGYMKFGYVENSWAEDGLKLLRMMIGLG--IRPNASSLSSVLLGCSHLSSLQLGKQVHQ 196
           I G  + G      A + L+L   M+     + PNA ++S  L+ C+ L +L+ G+Q+H 
Sbjct: 449 IGGNAQHGE-----ANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIHA 503

Query: 197 LVFKSPLCKDTTALTP-LISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGE 255
            V ++        +   LI MY K GD++ A  +F  + +++ V+W ++++GY  HG+GE
Sbjct: 504 YVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQRNGVSWTSLMTGYGMHGRGE 563

Query: 256 KALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCM 315
           +AL++F +M+  G+ PD +TFV +L AC+H+G+VD GI YF+ M  D+G+    +HY CM
Sbjct: 564 EALQIFYEMQKVGLVPDGVTFVVVLYACSHSGMVDQGINYFNGMNKDFGVVPGAEHYACM 623

Query: 316 VDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANA 375
           VDLL RAG+L EA++LI+ MP KP PA++  LLSACRV+  ++L E+AA  L  L   N 
Sbjct: 624 VDLLSRAGRLDEAMELIRGMPMKPTPAVWVALLSACRVYANVELGEYAANQLLELESGND 683

Query: 376 AGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPEL 435
            G Y  L+NIYA  + W DVARIR  MK   + K PG SW++       F +GD  HP  
Sbjct: 684 -GSYTLLSNIYANARCWKDVARIRYLMKNTGIKKRPGCSWVQGRKGTATFFAGDWSHPMS 742

Query: 436 VSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTP 495
             I++ L++L +R+K  GYVPD  FALH V +E K  LL  HSEKLA+A+G++    G P
Sbjct: 743 QQIYDLLRDLMQRIKALGYVPDNRFALHDVDDEEKGDLLSEHSEKLALAYGILTTAPGAP 802

Query: 496 IRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           IR+ KNLR CGDCH A  YIS I + EIIVRD++RFHHFK+G+CSC  YW
Sbjct: 803 IRITKNLRACGDCHSAFTYISIIIEHEIIVRDSSRFHHFKNGSCSCRGYW 852



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 109/378 (28%), Positives = 182/378 (48%), Gaps = 32/378 (8%)

Query: 3   VKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQ-----PDVVSY-NIMLSCILLNS---D 53
           V   V+WNS++A +  Q G    A ++F+++ +     PD VS  N++ +C  + +    
Sbjct: 192 VGDLVSWNSIVAAYM-QGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRG 250

Query: 54  DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE 113
             V  +     L  +D    N ++  + +   M +A  +F  M  K+ VSW+AM++GY +
Sbjct: 251 KQVHGYALRSGL-FEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQ 309

Query: 114 CGQLDKAVELF-KVAPVK---SVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIR 169
            G+ D A+ LF K+   K   +VV W+A+I+GY + G        + L + R M   G  
Sbjct: 310 IGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGL-----GFEALDVFRQMRLCGSE 364

Query: 170 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPL-------CKDTTALTPLISMYCKCGD 222
           PN  +L S+L GC+   +L  GK+ H    K  L         D   +  LI MY KC  
Sbjct: 365 PNVVTLVSLLSGCALAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINALIDMYSKCKS 424

Query: 223 LEDACKLFLEIQRKD--VVTWNAMISGYAQHGKGEKALRLFDKM--KDEGMKPDSITFVA 278
            + A  +F  I  KD  VVTW  +I G AQHG+  +AL LF +M   D  + P++ T   
Sbjct: 425 PKAARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISC 484

Query: 279 LLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 338
            L+AC   G +  G Q    ++ +   +A      C++D+  ++G  V+A  ++     +
Sbjct: 485 ALMACARLGALRFGRQIHAYVLRNRFESAMLFVANCLIDMYSKSGD-VDAARVVFDNMHQ 543

Query: 339 PQPAIFGTLLSACRVHKR 356
                + +L++   +H R
Sbjct: 544 RNGVSWTSLMTGYGMHGR 561



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 70/215 (32%), Positives = 121/215 (56%), Gaps = 15/215 (6%)

Query: 92  LFLAMPEKNSVSWSAMISGYIECGQLDKAVELF---KVAPVKSVVAWTAMISGYMKFGYV 148
           +F +  E N    + ++S Y  CG  + A ++F   +   V  +V+W ++++ YM+ G  
Sbjct: 152 VFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQGG-- 209

Query: 149 ENSWAEDGLKLL----RMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLC 204
                 D ++ +    RM   LGIRP+A SL +VL  C+ + +   GKQVH    +S L 
Sbjct: 210 ------DSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLF 263

Query: 205 KDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKM 264
           +D      ++ MY KCG +E+A K+F  ++ KDVV+WNAM++GY+Q G+ + AL LF+K+
Sbjct: 264 EDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKI 323

Query: 265 KDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSM 299
           ++E ++ + +T+ A++      GL    +  F  M
Sbjct: 324 REEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQM 358



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/242 (29%), Positives = 127/242 (52%), Gaps = 20/242 (8%)

Query: 107 MISGYIECGQLDKAVE-LFKVAPVK-SVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI 164
           +IS Y+      KA+  L ++ P   +V  W  +I   +  G++E     D L+L R M 
Sbjct: 64  IISMYLTFNSPAKALSVLRRLHPSSHTVFWWNQLIRRSVHLGFLE-----DVLQLYRRMQ 118

Query: 165 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 224
            LG RP+  +   VL  C  + S + G  VH +VF S    +      L+SMY +CG  E
Sbjct: 119 RLGWRPDHYTFPFVLKACGEIPSFRCGASVHAVVFASGFEWNVFVGNGLVSMYGRCGAWE 178

Query: 225 DACKLFLEIQRK---DVVTWNAMISGYAQHGKGEKALRLFDKM-KDEGMKPDSITFVALL 280
           +A ++F E++ +   D+V+WN++++ Y Q G   +A+++F++M +D G++PD+++ V +L
Sbjct: 179 NARQVFDEMRERGVGDLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVL 238

Query: 281 LACNHAGLVDLGIQYFDSMVNDYGIAAK--PDHY--TCMVDLLGRAGKLVEAVDLIKKMP 336
            AC   G    G Q     V+ Y + +    D +    +VD+  + G + EA  + ++M 
Sbjct: 239 PACASVGAWSRGKQ-----VHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMK 293

Query: 337 FK 338
            K
Sbjct: 294 VK 295



 Score = 55.1 bits (131), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 64/282 (22%), Positives = 119/282 (42%), Gaps = 21/282 (7%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPD--VVSYNIMLSCIL--------LNSD 53
           ++ V W +VL G   Q G+  +A ELF ++ QPD  V+     +SC L        L   
Sbjct: 440 RSVVTW-TVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFG 498

Query: 54  DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE 113
             + A+    R         N +I  + +  ++  AR +F  M ++N VSW+++++GY  
Sbjct: 499 RQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQRNGVSWTSLMTGYGM 558

Query: 114 CGQLDKAVELF----KVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLR-MMIGLGI 168
            G+ ++A+++F    KV  V   V +  ++      G V+      G+     M    G+
Sbjct: 559 HGRGEEALQIFYEMQKVGLVPDGVTFVVVLYACSHSGMVDQ-----GINYFNGMNKDFGV 613

Query: 169 RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK 228
            P A   + ++   S    L    ++ + +   P      AL     +Y      E A  
Sbjct: 614 VPGAEHYACMVDLLSRAGRLDEAMELIRGMPMKPTPAVWVALLSACRVYANVELGEYAAN 673

Query: 229 LFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMK 270
             LE++  +  ++  + + YA     +   R+   MK+ G+K
Sbjct: 674 QLLELESGNDGSYTLLSNIYANARCWKDVARIRYLMKNTGIK 715


>gi|125597850|gb|EAZ37630.1| hypothetical protein OsJ_21964 [Oryza sativa Japonica Group]
          Length = 583

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 210/533 (39%), Positives = 314/533 (58%), Gaps = 16/533 (3%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRL----PIKDTASWNTM 76
           G L DA+ + D++P+  VVS+  M+S     ++  V A D F ++     I +  +  T+
Sbjct: 59  GALDDARNVLDRMPERSVVSWTTMISG-YSQTERHVEALDLFIKMLRAGCIPNEYTLATV 117

Query: 77  ISGFVQKKNMAKARDLFLAMPEKNSVSW----SAMISGYIECGQLDKAVELFKVAPVKSV 132
           ++     +++ + + +   + + N  S     S+++  Y +   + +A  +F   P + V
Sbjct: 118 LTSCSGPQSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDV 177

Query: 133 VAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGK 192
           V+ TA+ISGY + G       E+ L L R +   G++ N  + ++++   S L+SL  GK
Sbjct: 178 VSCTAIISGYAQKGL-----DEEALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYGK 232

Query: 193 QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHG 252
           QVH L+ +  L         LI MY KCG L  + ++F  +  + VV+WNAM+ GY +HG
Sbjct: 233 QVHALILRKELPFFVALQNSLIDMYSKCGKLLYSRRVFDNMLERSVVSWNAMLMGYGRHG 292

Query: 253 KGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY 312
            G + + LF  +  E +KPDS+T +A+L  C+H GLVD G+  FD++V +        HY
Sbjct: 293 LGHEVISLFKDLHKE-VKPDSVTLLAVLSGCSHGGLVDEGLDIFDTVVKEQSALLHTGHY 351

Query: 313 TCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNP 372
            C++DLLGR+G+L +A++LI+ MPF+  P+I+G+LL ACRVH  + + E  A  L  + P
Sbjct: 352 GCIIDLLGRSGRLEKALNLIENMPFESTPSIWGSLLGACRVHANVHVGELVAQKLLEMEP 411

Query: 373 ANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVH 432
            NA G YV L+NIYAA   W DV ++R  M E  V K PG SWI +  V+H F S +R H
Sbjct: 412 ENA-GNYVILSNIYAAAGMWKDVFKVRKLMLEKTVTKEPGQSWIILDKVIHTFHSSERFH 470

Query: 433 PELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPL 492
           P    I+ K+KE+   +K AG+VPDL   LH V +E KE++LL HSEKLAI FGL+  P 
Sbjct: 471 PSKKDINAKIKEIFVDIKAAGFVPDLSCVLHDVDDEQKERMLLGHSEKLAITFGLMNTPP 530

Query: 493 GTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           G  IRV KNLR+C DCH   K++S + +REI +RD  RFH    G C+CGDYW
Sbjct: 531 GLTIRVMKNLRICVDCHNFAKFVSKVYEREISLRDKNRFHLLTHGNCTCGDYW 583



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 68/190 (35%), Positives = 106/190 (55%), Gaps = 5/190 (2%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI 164
           + +++ Y+ CG LD A  +    P +SVV+WT MISGY      +     + L L   M+
Sbjct: 49  TRLVTMYVRCGALDDARNVLDRMPERSVVSWTTMISGYS-----QTERHVEALDLFIKML 103

Query: 165 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 224
             G  PN  +L++VL  CS   S+  GKQVH L+ K+         + L+ MY K  +++
Sbjct: 104 RAGCIPNEYTLATVLTSCSGPQSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYAKSENIQ 163

Query: 225 DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 284
           +A ++F  +  +DVV+  A+ISGYAQ G  E+AL LF ++  EGM+ + +TF  L+ A +
Sbjct: 164 EARRVFDTLPERDVVSCTAIISGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTTLVTALS 223

Query: 285 HAGLVDLGIQ 294
               +D G Q
Sbjct: 224 GLASLDYGKQ 233



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 38/119 (31%), Positives = 60/119 (50%), Gaps = 4/119 (3%)

Query: 170 PNASS----LSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLED 225
           P AS+      + +  C    +L  G+QVH  +  +         T L++MY +CG L+D
Sbjct: 4   PGASARFHEYEAAITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDD 63

Query: 226 ACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 284
           A  +   +  + VV+W  MISGY+Q  +  +AL LF KM   G  P+  T   +L +C+
Sbjct: 64  ARNVLDRMPERSVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCS 122


>gi|51090919|dbj|BAD35524.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|51090953|dbj|BAD35556.1| selenium-binding protein-like [Oryza sativa Japonica Group]
          Length = 615

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 210/533 (39%), Positives = 314/533 (58%), Gaps = 16/533 (3%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRL----PIKDTASWNTM 76
           G L DA+ + D++P+  VVS+  M+S     ++  V A D F ++     I +  +  T+
Sbjct: 91  GALDDARNVLDRMPERSVVSWTTMISG-YSQTERHVEALDLFIKMLRAGCIPNEYTLATV 149

Query: 77  ISGFVQKKNMAKARDLFLAMPEKNSVSW----SAMISGYIECGQLDKAVELFKVAPVKSV 132
           ++     +++ + + +   + + N  S     S+++  Y +   + +A  +F   P + V
Sbjct: 150 LTSCSGPQSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDV 209

Query: 133 VAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGK 192
           V+ TA+ISGY + G       E+ L L R +   G++ N  + ++++   S L+SL  GK
Sbjct: 210 VSCTAIISGYAQKGL-----DEEALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYGK 264

Query: 193 QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHG 252
           QVH L+ +  L         LI MY KCG L  + ++F  +  + VV+WNAM+ GY +HG
Sbjct: 265 QVHALILRKELPFFVALQNSLIDMYSKCGKLLYSRRVFDNMLERSVVSWNAMLMGYGRHG 324

Query: 253 KGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY 312
            G + + LF  +  E +KPDS+T +A+L  C+H GLVD G+  FD++V +        HY
Sbjct: 325 LGHEVISLFKDLHKE-VKPDSVTLLAVLSGCSHGGLVDEGLDIFDTVVKEQSALLHTGHY 383

Query: 313 TCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNP 372
            C++DLLGR+G+L +A++LI+ MPF+  P+I+G+LL ACRVH  + + E  A  L  + P
Sbjct: 384 GCIIDLLGRSGRLEKALNLIENMPFESTPSIWGSLLGACRVHANVHVGELVAQKLLEMEP 443

Query: 373 ANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVH 432
            NA G YV L+NIYAA   W DV ++R  M E  V K PG SWI +  V+H F S +R H
Sbjct: 444 ENA-GNYVILSNIYAAAGMWKDVFKVRKLMLEKTVTKEPGQSWIILDKVIHTFHSSERFH 502

Query: 433 PELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPL 492
           P    I+ K+KE+   +K AG+VPDL   LH V +E KE++LL HSEKLAI FGL+  P 
Sbjct: 503 PSKKDINAKIKEIFVDIKAAGFVPDLSCVLHDVDDEQKERMLLGHSEKLAITFGLMNTPP 562

Query: 493 GTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           G  IRV KNLR+C DCH   K++S + +REI +RD  RFH    G C+CGDYW
Sbjct: 563 GLTIRVMKNLRICVDCHNFAKFVSKVYEREISLRDKNRFHLLTHGNCTCGDYW 615



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 68/190 (35%), Positives = 106/190 (55%), Gaps = 5/190 (2%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI 164
           + +++ Y+ CG LD A  +    P +SVV+WT MISGY      +     + L L   M+
Sbjct: 81  TRLVTMYVRCGALDDARNVLDRMPERSVVSWTTMISGYS-----QTERHVEALDLFIKML 135

Query: 165 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 224
             G  PN  +L++VL  CS   S+  GKQVH L+ K+         + L+ MY K  +++
Sbjct: 136 RAGCIPNEYTLATVLTSCSGPQSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYAKSENIQ 195

Query: 225 DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 284
           +A ++F  +  +DVV+  A+ISGYAQ G  E+AL LF ++  EGM+ + +TF  L+ A +
Sbjct: 196 EARRVFDTLPERDVVSCTAIISGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTTLVTALS 255

Query: 285 HAGLVDLGIQ 294
               +D G Q
Sbjct: 256 GLASLDYGKQ 265



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/129 (31%), Positives = 65/129 (50%), Gaps = 5/129 (3%)

Query: 160 LRMMIGLGIRPNASS----LSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLIS 215
           LR   G+ + P AS+      + +  C    +L  G+QVH  +  +         T L++
Sbjct: 27  LRAASGMAL-PGASARFHEYEAAITACIERRALWEGRQVHARMITARYRPAVFLGTRLVT 85

Query: 216 MYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSIT 275
           MY +CG L+DA  +   +  + VV+W  MISGY+Q  +  +AL LF KM   G  P+  T
Sbjct: 86  MYVRCGALDDARNVLDRMPERSVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYT 145

Query: 276 FVALLLACN 284
              +L +C+
Sbjct: 146 LATVLTSCS 154


>gi|449433131|ref|XP_004134351.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Cucumis sativus]
          Length = 895

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 215/621 (34%), Positives = 338/621 (54%), Gaps = 84/621 (13%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELF-DKIP------------------------- 34
           M VK +V WN+++ G+A Q G+ + + +LF D I                          
Sbjct: 283 MAVKDSVTWNTMICGYA-QLGRHEASVKLFMDMIDGFVPDMLSITSTIRACGQSGDLQVG 341

Query: 35  ------------QPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQ 82
                       + D V+ NI++  +     D++AA + F     KD+ +WN++I+G+ Q
Sbjct: 342 KFVHKYLIGSGFECDTVACNILID-MYAKCGDLLAAQEVFDTTKCKDSVTWNSLINGYTQ 400

Query: 83  KKNMAKARDLFLAMP---EKNSVSW----------------------------------- 104
                +  + F  M    + +SV++                                   
Sbjct: 401 SGYYKEGLESFKMMKMERKPDSVTFVLLLSIFSQLADINQGRGIHCDVIKFGFEAELIIG 460

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI 164
           ++++  Y +CG++D  +++F       +++W  +I+  + F          G +++  M 
Sbjct: 461 NSLLDVYAKCGEMDDLLKVFSYMSAHDIISWNTVIASSVHF-----DDCTVGFQMINEMR 515

Query: 165 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 224
             G+ P+ +++  +L  CS L+  + GK++H  +FKS    +      LI MY KCG LE
Sbjct: 516 TEGLMPDEATVLGILPMCSLLAVRRQGKEIHGYIFKSGFESNVPIGNALIEMYSKCGSLE 575

Query: 225 DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 284
           +  K+F  ++ KDVVTW A+IS +  +G+G+KAL+ F  M+  G+ PDS+ F+A + AC+
Sbjct: 576 NCIKVFKYMKEKDVVTWTALISAFGMYGEGKKALKAFQDMELSGVLPDSVAFIAFIFACS 635

Query: 285 HAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIF 344
           H+G+V  G+++FD M  DY +  + +HY C+VDLL R+G L +A + I  MP KP  +++
Sbjct: 636 HSGMVKEGLRFFDRMKTDYNLEPRMEHYACVVDLLARSGLLAQAEEFILSMPMKPDASLW 695

Query: 345 GTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKE 404
           G LLSACR     ++A+  +  +  LN ++  G YV ++NIYA + KWD V  +R SMK 
Sbjct: 696 GALLSACRARGNTNIAQRVSKKILELN-SDDTGYYVLVSNIYATLGKWDQVKTVRNSMKT 754

Query: 405 NNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHA 464
             + K PG SWIE+   V+ FR+GD+   +   + + L+ L + M   GYV DL+FALH 
Sbjct: 755 KGLKKEPGSSWIEIQKRVYVFRTGDKSFEQYDKVKDLLEYLVRLMAKEGYVADLQFALHD 814

Query: 465 VGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREII 524
           V E+ K  +L  HSE+LAIAFGL+    G+P+ V KNLRVCGDCH  TKYI+ I +REI+
Sbjct: 815 VEEDDKRDMLCGHSERLAIAFGLLNTKPGSPLLVMKNLRVCGDCHTVTKYITKIMQREIL 874

Query: 525 VRDTTRFHHFKDGTCSCGDYW 545
           VRD  RFH FKDG CSCGD+W
Sbjct: 875 VRDANRFHRFKDGACSCGDHW 895



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 91/280 (32%), Positives = 142/280 (50%), Gaps = 32/280 (11%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M+ + +V+WNS+++G+    G  +DA +++ K     +V     +S +LL    ++A   
Sbjct: 182 MSNRDSVSWNSLISGYCSN-GFWEDALDMYHKFRMTGMVPDCFTMSSVLLACGSLMA--- 237

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
                 +K+  +    + G ++K  +A   D+ +          + ++S Y +  +L +A
Sbjct: 238 ------VKEGVA----VHGVIEKIGIAG--DVIIG---------NGLLSMYFKFERLREA 276

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLL 180
             +F    VK  V W  MI GY + G  E S     +KL   MI  G  P+  S++S + 
Sbjct: 277 RRVFSKMAVKDSVTWNTMICGYAQLGRHEAS-----VKLFMDMID-GFVPDMLSITSTIR 330

Query: 181 GCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVT 240
            C     LQ+GK VH+ +  S    DT A   LI MY KCGDL  A ++F   + KD VT
Sbjct: 331 ACGQSGDLQVGKFVHKYLIGSGFECDTVACNILIDMYAKCGDLLAAQEVFDTTKCKDSVT 390

Query: 241 WNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 280
           WN++I+GY Q G  ++ L  F  MK E  KPDS+TFV LL
Sbjct: 391 WNSLINGYTQSGYYKEGLESFKMMKME-RKPDSVTFVLLL 429



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 74/231 (32%), Positives = 121/231 (52%), Gaps = 15/231 (6%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI 164
           +A+I  Y     LD A  +F+    +  V+W ++ISGY   G+    W ED L +     
Sbjct: 160 NALIDMYSRFVDLDNARYVFEEMSNRDSVSWNSLISGYCSNGF----W-EDALDMYHKFR 214

Query: 165 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 224
             G+ P+  ++SSVLL C  L +++ G  VH ++ K  +  D      L+SMY K   L 
Sbjct: 215 MTGMVPDCFTMSSVLLACGSLMAVKEGVAVHGVIEKIGIAGDVIIGNGLLSMYFKFERLR 274

Query: 225 DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 284
           +A ++F ++  KD VTWN MI GYAQ G+ E +++LF  M D G  PD ++  + + AC 
Sbjct: 275 EARRVFSKMAVKDSVTWNTMICGYAQLGRHEASVKLFMDMID-GFVPDMLSITSTIRACG 333

Query: 285 HAGLVDLGIQYFDSMVNDYGIAA--KPDHYTC--MVDLLGRAGKLVEAVDL 331
            +G + +G       V+ Y I +  + D   C  ++D+  + G L+ A ++
Sbjct: 334 QSGDLQVG-----KFVHKYLIGSGFECDTVACNILIDMYAKCGDLLAAQEV 379



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 65/233 (27%), Positives = 109/233 (46%), Gaps = 7/233 (3%)

Query: 107 MISGYIECGQLDKAVELFK-VAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIG 165
           +IS Y +      +V +F+ ++P  +V  W ++I          N      L     M  
Sbjct: 60  LISKYAQVKDPISSVSVFRSISPTNNVYLWNSIIRAL-----THNGLFTQALGYYTEMRE 114

Query: 166 LGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLED 225
             ++P+A +  SV+  C+ +  L+LG  VH+   +     D      LI MY +  DL++
Sbjct: 115 KKLQPDAFTFPSVINSCARILDLELGCIVHEHAMEMGFESDLYIGNALIDMYSRFVDLDN 174

Query: 226 ACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNH 285
           A  +F E+  +D V+WN++ISGY  +G  E AL ++ K +  GM PD  T  ++LLAC  
Sbjct: 175 ARYVFEEMSNRDSVSWNSLISGYCSNGFWEDALDMYHKFRMTGMVPDCFTMSSVLLACGS 234

Query: 286 AGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 338
              V  G+     ++   GIA        ++ +  +  +L EA  +  KM  K
Sbjct: 235 LMAVKEGVA-VHGVIEKIGIAGDVIIGNGLLSMYFKFERLREARRVFSKMAVK 286



 Score = 47.0 bits (110), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 27/102 (26%), Positives = 51/102 (50%), Gaps = 1/102 (0%)

Query: 192 KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ-RKDVVTWNAMISGYAQ 250
           + VH L+  S L         LIS Y +  D   +  +F  I    +V  WN++I     
Sbjct: 39  RTVHSLIITSGLSLSVIFSGKLISKYAQVKDPISSVSVFRSISPTNNVYLWNSIIRALTH 98

Query: 251 HGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 292
           +G   +AL  + +M+++ ++PD+ TF +++ +C     ++LG
Sbjct: 99  NGLFTQALGYYTEMREKKLQPDAFTFPSVINSCARILDLELG 140


>gi|242051881|ref|XP_002455086.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
 gi|241927061|gb|EES00206.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
          Length = 627

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 209/552 (37%), Positives = 316/552 (57%), Gaps = 21/552 (3%)

Query: 5   TTVNWNSVLAGFAKQRGKLKDAQELFDKIPQ----PDVVSYNIMLSCILLNSDDVVAAFD 60
           T V WN++++G  +  G+  ++   F  + +    P  V+Y  +LS     + DV+    
Sbjct: 86  TPVAWNALISGHNRG-GRFGESCGSFVDMARAGAAPTPVTYVSVLSACGKGTRDVLLGMQ 144

Query: 61  FFQRLP----IKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQ 116
              R+     + D    N ++  + +  +M  A  +F  M  ++ VSW++++SG    GQ
Sbjct: 145 VHGRVVGSGVLPDLRVENALVDMYAECADMGSAWKVFDGMQVRSVVSWTSLLSGLARLGQ 204

Query: 117 LDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWA---EDGLKLLRMMIGLGIRPNAS 173
           +D+A +LF   P +  V+WTAMI GY+        WA    + L++ R M    +  +  
Sbjct: 205 VDEARDLFDRMPERDTVSWTAMIDGYV--------WAARFREALEMFREMQYSNVSADEF 256

Query: 174 SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI 233
           ++ SV+  C+ L +L++G+ V   + +  +  D      LI MY KCG +E A  +F  +
Sbjct: 257 TMVSVITACAQLGALEMGEWVRVYMSRQGIKMDAFVGNALIDMYSKCGSIERALDVFKGM 316

Query: 234 QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGI 293
             +D  TW A+I G A +G  E+A+ +F +M      PD +TF+ +L AC HAGLVD G 
Sbjct: 317 HHRDKFTWTAIILGLAVNGYEEEAIEMFHRMIRVSETPDEVTFIGVLTACTHAGLVDKGR 376

Query: 294 QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRV 353
           ++F SM+  Y IA    HY C++DLLGRAGK+ EA+D I +MP  P   I+GTLL+ACRV
Sbjct: 377 EFFLSMIEAYNIAPNVVHYGCIIDLLGRAGKITEALDTIDQMPMTPNSTIWGTLLAACRV 436

Query: 354 HKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGY 413
           H   ++ E  A  L  L+P N+   Y+ L+NIYA   +W+DV R+R ++ E  + K PG 
Sbjct: 437 HGNSEIGELVAERLLELDPENSM-VYILLSNIYAKCNRWEDVRRLRHAIMEKGIKKEPGC 495

Query: 414 SWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQL 473
           S IE+  ++HEF +GD+ HP    I+ KL+ +   +   GY PD+      V E+ K+++
Sbjct: 496 SLIEMDGIIHEFVAGDQSHPMSKEIYSKLESIISDLNNVGYFPDVTEVFVEVAEKEKKKV 555

Query: 474 LLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHH 533
           L +HSEKLAIAF L+     T IR+ KNLR+C DCH A K IS +  RE++VRD TRFHH
Sbjct: 556 LYWHSEKLAIAFALLSSKPNTVIRIVKNLRMCLDCHNAIKLISRLYGREVVVRDRTRFHH 615

Query: 534 FKDGTCSCGDYW 545
           F+ G CSC DYW
Sbjct: 616 FRHGFCSCKDYW 627



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 61/247 (24%), Positives = 104/247 (42%), Gaps = 38/247 (15%)

Query: 126 VAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSH- 184
           V    + VAW A+ISG+ + G    S           M   G  P   +  SVL  C   
Sbjct: 81  VGECDTPVAWNALISGHNRGGRFGESCGS-----FVDMARAGAAPTPVTYVSVLSACGKG 135

Query: 185 LSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAM 244
              + LG QVH  V  S +  D      L+ MY +C D+  A K+F  +Q + VV+W ++
Sbjct: 136 TRDVLLGMQVHGRVVGSGVLPDLRVENALVDMYAECADMGSAWKVFDGMQVRSVVSWTSL 195

Query: 245 ISGYAQHGKGEKALRLFDKMKDE-------------------------------GMKPDS 273
           +SG A+ G+ ++A  LFD+M +                                 +  D 
Sbjct: 196 LSGLARLGQVDEARDLFDRMPERDTVSWTAMIDGYVWAARFREALEMFREMQYSNVSADE 255

Query: 274 ITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIK 333
            T V+++ AC   G +++G ++    ++  GI         ++D+  + G +  A+D+ K
Sbjct: 256 FTMVSVITACAQLGALEMG-EWVRVYMSRQGIKMDAFVGNALIDMYSKCGSIERALDVFK 314

Query: 334 KMPFKPQ 340
            M  + +
Sbjct: 315 GMHHRDK 321



 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 68/300 (22%), Positives = 135/300 (45%), Gaps = 48/300 (16%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M V++ V+W S+L+G A+  G++ +A++LFD++P+ D VS+  M+   +  +     A +
Sbjct: 184 MQVRSVVSWTSLLSGLARL-GQVDEARDLFDRMPERDTVSWTAMIDGYVWAA-RFREALE 241

Query: 61  FFQRLPIK----DTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISGYI 112
            F+ +       D  +  ++I+   Q   +     + + M  +    ++   +A+I  Y 
Sbjct: 242 MFREMQYSNVSADEFTMVSVITACAQLGALEMGEWVRVYMSRQGIKMDAFVGNALIDMYS 301

Query: 113 ECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNA 172
           +CG +++A+++FK    +    WTA+I      G   N + E+ +++   MI +   P+ 
Sbjct: 302 KCGSIERALDVFKGMHHRDKFTWTAII-----LGLAVNGYEEEAIEMFHRMIRVSETPDE 356

Query: 173 SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLE 232
            +   VL  C+H   +  G++     F S +  +   + P                    
Sbjct: 357 VTFIGVLTACTHAGLVDKGRE----FFLSMI--EAYNIAP-------------------- 390

Query: 233 IQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 292
               +VV +  +I    + GK  +AL   D+M    M P+S  +  LL AC   G  ++G
Sbjct: 391 ----NVVHYGCIIDLLGRAGKITEALDTIDQMP---MTPNSTIWGTLLAACRVHGNSEIG 443


>gi|255543164|ref|XP_002512645.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548606|gb|EEF50097.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 716

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 206/532 (38%), Positives = 319/532 (59%), Gaps = 13/532 (2%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLN--SDDVVAAFDFFQR-LPIKDTASWNTMI 77
           G   D   +F+++P+ DV+ ++ M+S    +  S + V  F   +R   + +  ++ +++
Sbjct: 191 GDANDVLRVFEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQMRRAFVLPNQFTFASVL 250

Query: 78  SGFVQKKNMAKARDLFLAMP----EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVV 133
                 +N+   + +   +     + N    +A++  Y +CG+LD +++LF   P ++ V
Sbjct: 251 QSCASIENLQLGKQVHCHVLKVGLDGNVFVSNALMDVYAKCGRLDNSMKLFMELPNRNEV 310

Query: 134 AWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ 193
            W  MI      GYV++   +  L L + M+   ++ +  + SSVL  C+ L++++LG Q
Sbjct: 311 TWNTMI-----VGYVQSGDGDKALSLYKNMLECQVQASEVTYSSVLRACASLAAMELGTQ 365

Query: 194 VHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGK 253
           +H L  K+   KD      LI MY KCG +++A  +F  +  +D ++WNAMISGY+ HG 
Sbjct: 366 IHSLSLKTIYDKDVVVGNALIDMYAKCGSIKNARLVFDMLSERDEISWNAMISGYSMHGL 425

Query: 254 GEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYT 313
             +AL+ F  M++    P+ +TFV++L AC++AGL+D+G  YF SMV DYGI    +HYT
Sbjct: 426 VGEALKAFQMMQETECVPNKLTFVSILSACSNAGLLDIGQNYFKSMVQDYGIEPCMEHYT 485

Query: 314 CMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPA 373
           CMV LLGR+G L +AV LI+++P +P   ++  LL AC +H  +DL   +A  +  ++P 
Sbjct: 486 CMVWLLGRSGHLDKAVKLIEEIPLEPNVKVWRALLGACVIHNDVDLGIMSAQQILQIDPQ 545

Query: 374 NAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHP 433
           + A  +V L+NIYA  ++W+ VA +R  MK   V K PG SWIE   +VH F  GD  HP
Sbjct: 546 DEA-THVLLSNIYARTRRWNSVASVRKFMKNKGVKKEPGLSWIENQGIVHYFSVGDTSHP 604

Query: 434 ELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLG 493
           ++  I   L+ L  + + AGYVPDL   L  V ++ K++ L  HSE+LA+AFGLI+ P  
Sbjct: 605 DMKMISGMLEWLNMKTEKAGYVPDLNAVLRDVEDDEKKRHLWVHSERLALAFGLIRTPSR 664

Query: 494 TPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
             IR+ KNLR+C DCH A K IS I +R+II+RD  RFHHF+DG CSCGDYW
Sbjct: 665 GHIRILKNLRICTDCHSAIKLISKIVQRDIIIRDMNRFHHFQDGICSCGDYW 716



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 84/315 (26%), Positives = 141/315 (44%), Gaps = 45/315 (14%)

Query: 65  LPIKDTASWNTMISGFVQKKNMAKARDLF-----------------------------LA 95
           +P ++T S+ T+I G+VQ   + +  DLF                             LA
Sbjct: 1   MPDRNTVSFVTLIQGYVQSFQLDEVVDLFSRVHREGHELNPFVFTTILKLLVSVECAELA 60

Query: 96  MP----------EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKF 145
                       E N+   +A+I  Y  CG ++ A + F     K +V+WT M++ Y   
Sbjct: 61  YSLHACIYKLGHESNAFVGTALIDAYAVCGSVNSARQAFDAIACKDMVSWTGMVACY--- 117

Query: 146 GYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCK 205
              EN   +D L+L   M  +G  PN  + + VL  C  L +  +GK VH  V K+    
Sbjct: 118 --AENDRFQDSLQLFAEMRMVGFNPNHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEM 175

Query: 206 DTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMK 265
           D      L+ +Y K GD  D  ++F E+ + DV+ W+ MIS YAQ  +  +A+ LF +M+
Sbjct: 176 DLYVGVGLLDLYTKFGDANDVLRVFEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQMR 235

Query: 266 DEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKL 325
              + P+  TF ++L +C     + LG Q     V   G+         ++D+  + G+L
Sbjct: 236 RAFVLPNQFTFASVLQSCASIENLQLGKQ-VHCHVLKVGLDGNVFVSNALMDVYAKCGRL 294

Query: 326 VEAVDLIKKMPFKPQ 340
             ++ L  ++P + +
Sbjct: 295 DNSMKLFMELPNRNE 309


>gi|79527297|ref|NP_198857.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171829|sp|Q9FND6.1|PP411_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g40410, mitochondrial; Flags: Precursor
 gi|10178153|dbj|BAB11598.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|17065126|gb|AAL32717.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|30725418|gb|AAP37731.1| At5g40410 [Arabidopsis thaliana]
 gi|332007162|gb|AED94545.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 608

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 216/533 (40%), Positives = 312/533 (58%), Gaps = 22/533 (4%)

Query: 26  AQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTA------SWNTMISG 79
           A++LFD++P+ D+VS+N ++S        +   F+   R+ I +        ++ +MIS 
Sbjct: 85  AEKLFDEMPERDLVSWNSLISG-YSGRGYLGKCFEVLSRMMISEVGFRPNEVTFLSMISA 143

Query: 80  FVQKKNMAKARDL------FLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVV 133
            V   +  + R +      F  + E   V+  A I+ Y + G L  + +LF+   +K++V
Sbjct: 144 CVYGGSKEEGRCIHGLVMKFGVLEEVKVVN--AFINWYGKTGDLTSSCKLFEDLSIKNLV 201

Query: 134 AWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ 193
           +W  MI       +++N  AE GL    M   +G  P+ ++  +VL  C  +  ++L + 
Sbjct: 202 SWNTMI-----VIHLQNGLAEKGLAYFNMSRRVGHEPDQATFLAVLRSCEDMGVVRLAQG 256

Query: 194 VHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGK 253
           +H L+       +    T L+ +Y K G LED+  +F EI   D + W AM++ YA HG 
Sbjct: 257 IHGLIMFGGFSGNKCITTALLDLYSKLGRLEDSSTVFHEITSPDSMAWTAMLAAYATHGF 316

Query: 254 GEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYT 313
           G  A++ F+ M   G+ PD +TF  LL AC+H+GLV+ G  YF++M   Y I  + DHY+
Sbjct: 317 GRDAIKHFELMVHYGISPDHVTFTHLLNACSHSGLVEEGKHYFETMSKRYRIDPRLDHYS 376

Query: 314 CMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPA 373
           CMVDLLGR+G L +A  LIK+MP +P   ++G LL ACRV+K   L   AA  LF L P 
Sbjct: 377 CMVDLLGRSGLLQDAYGLIKEMPMEPSSGVWGALLGACRVYKDTQLGTKAAERLFELEPR 436

Query: 374 NAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHP 433
           +    YV L+NIY+A   W D +RIR  MK+  +V+  G S+IE G  +H+F  GD  HP
Sbjct: 437 DGRN-YVMLSNIYSASGLWKDASRIRNLMKQKGLVRASGCSYIEHGNKIHKFVVGDWSHP 495

Query: 434 ELVSIHEKLKELEKRMKLA-GYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPL 492
           E   I +KLKE+ K+MK   GY    EF LH VGE+VKE+++  HSEK+A+AFGL+ V  
Sbjct: 496 ESEKIQKKLKEIRKKMKSEMGYKSKTEFVLHDVGEDVKEEMINQHSEKIAMAFGLLVVSP 555

Query: 493 GTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
             PI + KNLR+CGDCH   K IS IEKR II+RD+ RFHHF DG+CSC DYW
Sbjct: 556 MEPIIIRKNLRICGDCHETAKAISLIEKRRIIIRDSKRFHHFLDGSCSCSDYW 608



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 79/269 (29%), Positives = 137/269 (50%), Gaps = 9/269 (3%)

Query: 107 MISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIG- 165
           ++  Y+  G    A +LF   P + +V+W ++ISGY   GY+   +      L RMMI  
Sbjct: 72  LVGCYLRLGHDVCAEKLFDEMPERDLVSWNSLISGYSGRGYLGKCFE----VLSRMMISE 127

Query: 166 LGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLED 225
           +G RPN  +  S++  C +  S + G+ +H LV K  + ++   +   I+ Y K GDL  
Sbjct: 128 VGFRPNEVTFLSMISACVYGGSKEEGRCIHGLVMKFGVLEEVKVVNAFINWYGKTGDLTS 187

Query: 226 ACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNH 285
           +CKLF ++  K++V+WN MI  + Q+G  EK L  F+  +  G +PD  TF+A+L +C  
Sbjct: 188 SCKLFEDLSIKNLVSWNTMIVIHLQNGLAEKGLAYFNMSRRVGHEPDQATFLAVLRSCED 247

Query: 286 AGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFG 345
            G+V L  Q    ++   G +      T ++DL  + G+L ++  +  ++   P    + 
Sbjct: 248 MGVVRLA-QGIHGLIMFGGFSGNKCITTALLDLYSKLGRLEDSSTVFHEIT-SPDSMAWT 305

Query: 346 TLLSACRVH--KRLDLAEFAAMNLFNLNP 372
            +L+A   H   R  +  F  M  + ++P
Sbjct: 306 AMLAAYATHGFGRDAIKHFELMVHYGISP 334



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 60/246 (24%), Positives = 118/246 (47%), Gaps = 13/246 (5%)

Query: 171 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 230
           N SSL + +  C    S++L + +H  V KS   +       L+  Y + G    A KLF
Sbjct: 33  NVSSLIAAVKSCV---SIELCRLLHCKVVKSVSYRHGFIGDQLVGCYLRLGHDVCAEKLF 89

Query: 231 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKM--KDEGMKPDSITFVALLLACNHAGL 288
            E+  +D+V+WN++ISGY+  G   K   +  +M   + G +P+ +TF++++ AC + G 
Sbjct: 90  DEMPERDLVSWNSLISGYSGRGYLGKCFEVLSRMMISEVGFRPNEVTFLSMISACVYGGS 149

Query: 289 VDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLL 348
            + G +    +V  +G+  +       ++  G+ G L  +  L + +  K   + + T++
Sbjct: 150 KEEG-RCIHGLVMKFGVLEEVKVVNAFINWYGKTGDLTSSCKLFEDLSIKNLVS-WNTMI 207

Query: 349 SACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVV 408
               +H +  LAE   +  FN+  +   G     A   A ++  +D+  +RL+   + ++
Sbjct: 208 V---IHLQNGLAE-KGLAYFNM--SRRVGHEPDQATFLAVLRSCEDMGVVRLAQGIHGLI 261

Query: 409 KMPGYS 414
              G+S
Sbjct: 262 MFGGFS 267


>gi|356526928|ref|XP_003532067.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Glycine max]
          Length = 722

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 227/551 (41%), Positives = 328/551 (59%), Gaps = 21/551 (3%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQP---DVVSYNIMLSCILLNSD--DVVAAFDFFQR 64
           N+VLA +++ +G L +A+ +F ++ +    D VS+N M+     + +  + V  F    R
Sbjct: 178 NAVLACYSR-KGFLSEARRVFREMGEGGGRDEVSWNAMIVACGQHREGMEAVGLFREMVR 236

Query: 65  LPIK-DTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISGYIEC-GQLD 118
             +K D  +  ++++ F   K++   R     M +     NS   S +I  Y +C G + 
Sbjct: 237 RGLKVDMFTMASVLTAFTCVKDLVGGRQFHGMMIKSGFHGNSHVGSGLIDLYSKCAGSMV 296

Query: 119 KAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSV 178
           +  ++F+      +V W  MISG+  +       +EDGL   R M   G RP+  S   V
Sbjct: 297 ECRKVFEEITAPDLVLWNTMISGFSLY----EDLSEDGLWCFREMQRNGFRPDDCSFVCV 352

Query: 179 LLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALT-PLISMYCKCGDLEDACKLFLEIQRKD 237
              CS+LSS  LGKQVH L  KS +  +  ++   L++MY KCG++ DA ++F  +   +
Sbjct: 353 TSACSNLSSPSLGKQVHALAIKSDVPYNRVSVNNALVAMYSKCGNVHDARRVFDTMPEHN 412

Query: 238 VVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFD 297
            V+ N+MI+GYAQHG   ++LRLF+ M ++ + P+SITF+A+L AC H G V+ G +YF+
Sbjct: 413 TVSLNSMIAGYAQHGVEVESLRLFELMLEKDIAPNSITFIAVLSACVHTGKVEEGQKYFN 472

Query: 298 SMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRL 357
            M   + I  + +HY+CM+DLLGRAGKL EA  +I+ MPF P    + TLL ACR H  +
Sbjct: 473 MMKERFCIEPEAEHYSCMIDLLGRAGKLKEAERIIETMPFNPGSIEWATLLGACRKHGNV 532

Query: 358 DLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIE 417
           +LA  AA     L P NAA  YV L+N+YA+  +W++ A ++  M+E  V K PG SWIE
Sbjct: 533 ELAVKAANEFLRLEPYNAAP-YVMLSNMYASAARWEEAATVKRLMRERGVKKKPGCSWIE 591

Query: 418 VGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFAL---HAVGEEVKEQLL 474
           +   VH F + D  HP +  IH  + ++ K+MK AGYVPD+ +AL     V  + +E+ L
Sbjct: 592 IDKKVHVFVAEDTSHPMIKEIHVYMGKMLKKMKQAGYVPDIRWALVKDEEVEPDERERRL 651

Query: 475 LFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHF 534
           L+HSEKLA+AFGLI    G PI V KNLR+CGDCH A K ISA+  REI VRDT RFH F
Sbjct: 652 LYHSEKLAVAFGLISTEEGVPILVVKNLRICGDCHNAVKLISALTGREITVRDTHRFHCF 711

Query: 535 KDGTCSCGDYW 545
           K+G CSC DYW
Sbjct: 712 KEGHCSCRDYW 722



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 67/282 (23%), Positives = 125/282 (44%), Gaps = 38/282 (13%)

Query: 111 YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVE--------------------- 149
           Y +CG L  A   F +    +V ++  +I+ Y K   +                      
Sbjct: 54  YSKCGSLHNAQTSFHLTQYPNVFSYNTLINAYAKHSLIHIARRVFDEIPQPDIVSYNTLI 113

Query: 150 NSWAEDG-----LKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLC 204
            ++A+ G     L+L   +  L +  +  +LS V+  C     + L +Q+H  V      
Sbjct: 114 AAYADRGECGPTLRLFEEVRELRLGLDGFTLSGVITACG--DDVGLVRQLHCFVVVCGHD 171

Query: 205 KDTTALTPLISMYCKCGDLEDACKLFLEIQR---KDVVTWNAMISGYAQHGKGEKALRLF 261
              +    +++ Y + G L +A ++F E+     +D V+WNAMI    QH +G +A+ LF
Sbjct: 172 CYASVNNAVLACYSRKGFLSEARRVFREMGEGGGRDEVSWNAMIVACGQHREGMEAVGLF 231

Query: 262 DKMKDEGMKPDSITFVALLLACNHAGLVDL-GIQYFDSMVNDYGIAAKPDHYTCMVDLLG 320
            +M   G+K D  T  ++L A     + DL G + F  M+   G        + ++DL  
Sbjct: 232 REMVRRGLKVDMFTMASVLTA--FTCVKDLVGGRQFHGMMIKSGFHGNSHVGSGLIDLYS 289

Query: 321 R-AGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAE 361
           + AG +VE   + +++   P   ++ T++S   +++  DL+E
Sbjct: 290 KCAGSMVECRKVFEEIT-APDLVLWNTMISGFSLYE--DLSE 328



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 60/126 (47%), Gaps = 4/126 (3%)

Query: 174 SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI 233
           +  ++L  C     L  GK +H L FKS +   T        +Y KCG L +A   F   
Sbjct: 11  TFRNLLKACIAQRDLITGKILHALYFKSLIPPSTYLSNHFTLLYSKCGSLHNAQTSFHLT 70

Query: 234 QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGI 293
           Q  +V ++N +I+ YA+H     A R+FD++     +PD +++  L+ A    G     +
Sbjct: 71  QYPNVFSYNTLINAYAKHSLIHIARRVFDEIP----QPDIVSYNTLIAAYADRGECGPTL 126

Query: 294 QYFDSM 299
           + F+ +
Sbjct: 127 RLFEEV 132



 Score = 44.3 bits (103), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 35/153 (22%), Positives = 68/153 (44%), Gaps = 11/153 (7%)

Query: 7   VNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP 66
           V+ N+ L     + G + DA+ +FD +P+ + VS N M++    +  + V +   F+ + 
Sbjct: 382 VSVNNALVAMYSKCGNVHDARRVFDTMPEHNTVSLNSMIAGYAQHGVE-VESLRLFELML 440

Query: 67  IKDTA----SWNTMISGFVQKKNMAKARDLFLAMPEKNSVS-----WSAMISGYIECGQL 117
            KD A    ++  ++S  V    + + +  F  M E+  +      +S MI      G+L
Sbjct: 441 EKDIAPNSITFIAVLSACVHTGKVEEGQKYFNMMKERFCIEPEAEHYSCMIDLLGRAGKL 500

Query: 118 DKAVELFKVAPVK-SVVAWTAMISGYMKFGYVE 149
            +A  + +  P     + W  ++    K G VE
Sbjct: 501 KEAERIIETMPFNPGSIEWATLLGACRKHGNVE 533


>gi|30694644|ref|NP_191302.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218525905|sp|Q7Y211.2|PP285_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g57430, chloroplastic; Flags: Precursor
 gi|332646133|gb|AEE79654.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 890

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 218/547 (39%), Positives = 303/547 (55%), Gaps = 58/547 (10%)

Query: 51  NSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK-----NSVSWS 105
           N   V++    F  +  +    WN MI+G+ Q ++  +A  LF+ M E      NS + +
Sbjct: 350 NCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMA 409

Query: 106 AMISG-----------------------------------YIECGQLDKAVELFKVAPVK 130
            ++                                     Y   G++D A+ +F     +
Sbjct: 410 GVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDR 469

Query: 131 SVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGL-----------GIRPNASSLSSVL 179
            +V W  MI+GY     V +   ED L LL  M  L            ++PN+ +L ++L
Sbjct: 470 DLVTWNTMITGY-----VFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTIL 524

Query: 180 LGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVV 239
             C+ LS+L  GK++H    K+ L  D    + L+ MY KCG L+ + K+F +I +K+V+
Sbjct: 525 PSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVI 584

Query: 240 TWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSM 299
           TWN +I  Y  HG G++A+ L   M  +G+KP+ +TF+++  AC+H+G+VD G++ F  M
Sbjct: 585 TWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVM 644

Query: 300 VNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPA-IFGTLLSACRVHKRLD 358
             DYG+    DHY C+VDLLGRAG++ EA  L+  MP     A  + +LL A R+H  L+
Sbjct: 645 KPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLE 704

Query: 359 LAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEV 418
           + E AA NL  L P N A  YV LANIY++   WD    +R +MKE  V K PG SWIE 
Sbjct: 705 IGEIAAQNLIQLEP-NVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIEH 763

Query: 419 GTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHS 478
           G  VH+F +GD  HP+   +   L+ L +RM+  GYVPD    LH V E+ KE LL  HS
Sbjct: 764 GDEVHKFVAGDSSHPQSEKLSGYLETLWERMRKEGYVPDTSCVLHNVEEDEKEILLCGHS 823

Query: 479 EKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGT 538
           EKLAIAFG++    GT IRV KNLRVC DCH ATK+IS I  REII+RD  RFH FK+GT
Sbjct: 824 EKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLATKFISKIVDREIILRDVRRFHRFKNGT 883

Query: 539 CSCGDYW 545
           CSCGDYW
Sbjct: 884 CSCGDYW 890



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 83/341 (24%), Positives = 155/341 (45%), Gaps = 17/341 (4%)

Query: 6   TVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRL 65
           +V   + L    ++ G      ++FD+I + + VS+N ++S +       +A   F   L
Sbjct: 132 SVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCML 191

Query: 66  PIKDTASWNTMISGFVQKKNMAKARDLFLAMP---------EKNSVSWSAMISGYIECGQ 116
                 S  T++S      N+     L +            E NS   + +++ Y + G+
Sbjct: 192 DENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGELNSFIINTLVAMYGKLGK 251

Query: 117 LDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLS 176
           L  +  L      + +V W  ++S        +N    + L+ LR M+  G+ P+  ++S
Sbjct: 252 LASSKVLLGSFGGRDLVTWNTVLSSL-----CQNEQLLEALEYLREMVLEGVEPDEFTIS 306

Query: 177 SVLLGCSHLSSLQLGKQVHQLVFKS-PLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR 235
           SVL  CSHL  L+ GK++H    K+  L +++   + L+ MYC C  +    ++F  +  
Sbjct: 307 SVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFD 366

Query: 236 KDVVTWNAMISGYAQHGKGEKALRLFDKMKDE-GMKPDSITFVALLLACNHAGLVDLGIQ 294
           + +  WNAMI+GY+Q+   ++AL LF  M++  G+  +S T   ++ AC  +G      +
Sbjct: 367 RKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRK-E 425

Query: 295 YFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335
                V   G+         ++D+  R GK+  A+ +  KM
Sbjct: 426 AIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKM 466



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 60/204 (29%), Positives = 103/204 (50%), Gaps = 6/204 (2%)

Query: 163 MIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDT-TALTPLISMYCKCG 221
           MI LGI+P+  +  ++L   + L  ++LGKQ+H  V+K     D+ T    L+++Y KCG
Sbjct: 88  MIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCG 147

Query: 222 DLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLL 281
           D     K+F  I  ++ V+WN++IS      K E AL  F  M DE ++P S T V+++ 
Sbjct: 148 DFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVT 207

Query: 282 ACNHAGLVDLGIQYFDSMVNDYGIAAKPDH---YTCMVDLLGRAGKLVEAVDLIKKMPFK 338
           AC++  + + G+      V+ YG+     +      +V + G+ GKL  +  L+     +
Sbjct: 208 ACSNLPMPE-GLM-MGKQVHAYGLRKGELNSFIINTLVAMYGKLGKLASSKVLLGSFGGR 265

Query: 339 PQPAIFGTLLSACRVHKRLDLAEF 362
                   L S C+  + L+  E+
Sbjct: 266 DLVTWNTVLSSLCQNEQLLEALEY 289


>gi|357133320|ref|XP_003568274.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Brachypodium distachyon]
          Length = 919

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 213/544 (39%), Positives = 310/544 (56%), Gaps = 15/544 (2%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNS--DDVVAAFDFFQRLPI 67
           + VL     + G L  AQ + D I + DVVS+  M++  + +    + +  F   Q   I
Sbjct: 383 SGVLIDMYSKYGWLDKAQRILDMIEEKDVVSWTSMIAGYVQHEFCKEALETFKEMQACGI 442

Query: 68  -KDTASWNTMISG-----FVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAV 121
             D     + IS       V + +   AR ++++    +   W+ ++  Y  CG   +A 
Sbjct: 443 WPDNIGLASAISACAGIKAVHQGSQIHAR-VYVSGYSADVSIWNGLVYLYARCGISKEAF 501

Query: 122 ELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLG 181
             F+    K  + W  +ISG+ + G  E     + LK+   M   G + N  +  S +  
Sbjct: 502 SSFEAIEHKEGITWNGLISGFAQSGLYE-----EALKVFMKMDQAGAKYNVFTFVSSISA 556

Query: 182 CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTW 241
            ++L+ ++ GKQ+H  V K+    +T     LIS+Y KCG +EDA   F E+ +++ V+W
Sbjct: 557 SANLADIKQGKQIHARVIKTGYTSETEISNALISLYGKCGSIEDAKMDFFEMTKRNEVSW 616

Query: 242 NAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN 301
           N +I+  +QHG+G +AL LFD+MK +G+KP  +TFV +L AC+H GLV+ G+ YF SM N
Sbjct: 617 NTIITCCSQHGRGLEALDLFDQMKQQGLKPSDVTFVGVLTACSHVGLVEEGLCYFKSMSN 676

Query: 302 DYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAE 361
           ++GI  +PDHY C+VD+LGRAG+L  A   +++MP      ++ TLLSAC+VHK L++ E
Sbjct: 677 EHGIHPRPDHYACVVDILGRAGQLDRAKRFVEEMPIPADSMVWRTLLSACKVHKNLEIGE 736

Query: 362 FAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTV 421
           FAA +L  L P ++A  YV L+N YA   KW    +IR  MK+  V K PG SWIEV  V
Sbjct: 737 FAAKHLLELEPHDSAS-YVLLSNAYAVTGKWASRDQIRKIMKDRGVRKEPGRSWIEVKNV 795

Query: 422 VHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKL 481
           VH F  GDR+HP    I+  L  L  R+   GY  +     H   +E K+     HSEKL
Sbjct: 796 VHAFFVGDRLHPLADQIYNFLSHLNDRLYKIGYKQENYHLFHEKEKEGKDPTAFVHSEKL 855

Query: 482 AIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSC 541
           A+AFGL+ +P   P+RV KNLRVC DCH   K+ S +  REI++RD  RFHHF +G+CSC
Sbjct: 856 AVAFGLMSLPSCMPLRVIKNLRVCNDCHTWMKFTSGVMGREIVLRDVYRFHHFNNGSCSC 915

Query: 542 GDYW 545
           GDYW
Sbjct: 916 GDYW 919



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 97/356 (27%), Positives = 162/356 (45%), Gaps = 49/356 (13%)

Query: 107 MISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGL 166
           +I  Y + G + +A  +F+   V+  V+W A++SGY      +N   E+ ++L R M   
Sbjct: 83  LIDLYAKKGFVRRARRVFEELSVRDNVSWVAVLSGY-----AQNGLGEEAVRLYREMHRS 137

Query: 167 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 226
           G+ P    LSS+L  C+     QLG+ +H  V+K     +T     LIS+Y +C     A
Sbjct: 138 GVVPTPYVLSSILSACTKTELFQLGRLIHVQVYKQGFFSETFVGNALISLYLRCRSFRLA 197

Query: 227 CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHA 286
            ++F ++   D VT+N +ISG+AQ G G++AL +FD+M+  G+ PDS+T  +LL AC+  
Sbjct: 198 DRVFCDMLYCDSVTFNTLISGHAQCGHGDRALGIFDEMQLSGLSPDSVTIASLLAACSAV 257

Query: 287 G--------------------------LVDLGIQYFDS----MVNDYGIAAKPDHYTCMV 316
           G                          L+DL ++  D      + D G       +  M+
Sbjct: 258 GDLRKGKQLHSYLLKAGMSLDYIMEGSLLDLYVKSGDIEEALQIFDSGDRTNVVLWNLML 317

Query: 317 DLLGRAGKLVEAVDLIKKM---PFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPA 373
              G+   L ++ D+  +M     +P    +  +L  C     + L E   ++   +   
Sbjct: 318 VAYGQIDDLAKSFDIFYRMLAAGVRPNKFTYPCMLRTCTHTGEIGLGE--QIHSLTIKNG 375

Query: 374 NAAGCYVQ--LANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEV--GTVVHEF 425
             +  YV   L ++Y+     D   RI   ++E +VV     SW  +  G V HEF
Sbjct: 376 FQSDMYVSGVLIDMYSKYGWLDKAQRILDMIEEKDVV-----SWTSMIAGYVQHEF 426



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 87/346 (25%), Positives = 167/346 (48%), Gaps = 52/346 (15%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCIL-------LNSD 53
           ++V+  V+W +VL+G+A Q G  ++A  L+ ++ +  VV    +LS IL       L   
Sbjct: 103 LSVRDNVSWVAVLSGYA-QNGLGEEAVRLYREMHRSGVVPTPYVLSSILSACTKTELFQL 161

Query: 54  DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE 113
             +     +++    +T   N +IS +++ ++   A  +F  M   +SV+++ +ISG+ +
Sbjct: 162 GRLIHVQVYKQGFFSETFVGNALISLYLRCRSFRLADRVFCDMLYCDSVTFNTLISGHAQ 221

Query: 114 CGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNAS 173
           CG  D+A+ +F                              D ++L       G+ P++ 
Sbjct: 222 CGHGDRALGIF------------------------------DEMQLS------GLSPDSV 245

Query: 174 SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI 233
           +++S+L  CS +  L+ GKQ+H  + K+ +  D      L+ +Y K GD+E+A ++F   
Sbjct: 246 TIASLLAACSAVGDLRKGKQLHSYLLKAGMSLDYIMEGSLLDLYVKSGDIEEALQIFDSG 305

Query: 234 QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGI 293
            R +VV WN M+  Y Q     K+  +F +M   G++P+  T+  +L  C H G + LG 
Sbjct: 306 DRTNVVLWNLMLVAYGQIDDLAKSFDIFYRMLAAGVRPNKFTYPCMLRTCTHTGEIGLGE 365

Query: 294 QYFDSMVNDYGIAAKPDHYT--CMVDLLGRAGKLVEA---VDLIKK 334
           Q     + +     + D Y    ++D+  + G L +A   +D+I++
Sbjct: 366 QIHSLTIKN---GFQSDMYVSGVLIDMYSKYGWLDKAQRILDMIEE 408



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 71/286 (24%), Positives = 129/286 (45%), Gaps = 28/286 (9%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNI--MLSCILLNSD--DVVAAF 59
           K  + WN +++GFA Q G  ++A ++F K+ Q     YN+   +S I  +++  D+    
Sbjct: 510 KEGITWNGLISGFA-QSGLYEEALKVFMKMDQAG-AKYNVFTFVSSISASANLADIKQGK 567

Query: 60  DFFQRL----PIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECG 115
               R+       +T   N +IS + +  ++  A+  F  M ++N VSW+ +I+   + G
Sbjct: 568 QIHARVIKTGYTSETEISNALISLYGKCGSIEDAKMDFFEMTKRNEVSWNTIITCCSQHG 627

Query: 116 QLDKAVELF---KVAPVK-SVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIG-LGIRP 170
           +  +A++LF   K   +K S V +  +++     G V     E+GL   + M    GI P
Sbjct: 628 RGLEALDLFDQMKQQGLKPSDVTFVGVLTACSHVGLV-----EEGLCYFKSMSNEHGIHP 682

Query: 171 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDL----EDA 226
                + V+        L   K   + V + P+  D+     L+S  CK        E A
Sbjct: 683 RPDHYACVVDILGRAGQLDRAK---RFVEEMPIPADSMVWRTLLSA-CKVHKNLEIGEFA 738

Query: 227 CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPD 272
            K  LE++  D  ++  + + YA  GK     ++   MKD G++ +
Sbjct: 739 AKHLLELEPHDSASYVLLSNAYAVTGKWASRDQIRKIMKDRGVRKE 784


>gi|110736949|dbj|BAF00431.1| hypothetical protein [Arabidopsis thaliana]
          Length = 659

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 220/571 (38%), Positives = 316/571 (55%), Gaps = 82/571 (14%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIML---------------------------SCILLNSD 53
           GKL+DA+++FD+IP+ D+VS+  M+                             + L+S 
Sbjct: 125 GKLEDARKVFDEIPKRDIVSWTSMIRGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSM 184

Query: 54  DVVAAFDFFQRLPIKD-----------------TASWNTMISGFVQ--KKNMAKARDLFL 94
            +V+      R+P K                   +  NT++  + +  +  +A AR +F 
Sbjct: 185 GLVSVISACSRVPAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFD 244

Query: 95  AMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAE 154
            + +K+ VS+++++S Y + G  ++A E+F+      VV +                   
Sbjct: 245 QIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTF------------------- 285

Query: 155 DGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLI 214
                           NA +LS+VLL  SH  +L++GK +H  V +  L  D    T +I
Sbjct: 286 ----------------NAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSII 329

Query: 215 SMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSI 274
            MYCKCG +E A K F  ++ K+V +W AMI+GY  HG   KAL LF  M D G++P+ I
Sbjct: 330 DMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYI 389

Query: 275 TFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKK 334
           TFV++L AC+HAGL   G ++F++M   +G+    +HY CMVDLLGRAG L +A DLI++
Sbjct: 390 TFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQR 449

Query: 335 MPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDD 394
           M  KP   I+ +LL+ACR+HK ++LAE +   LF L+ +N  G Y+ L++IYA   +W D
Sbjct: 450 MKMKPDSIIWSSLLAACRIHKNVELAEISVARLFELDSSN-CGYYMLLSHIYADAGRWKD 508

Query: 395 VARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGY 454
           V R+R+ MK   +VK PG+S +E+   VH F  GD  HP+   I+E L EL +++  AGY
Sbjct: 509 VERVRMIMKNRGLVKPPGFSLLELNGEVHVFLIGDEEHPQREKIYEFLAELNRKLLEAGY 568

Query: 455 VPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKY 514
           V +     H V EE KE  L  HSEKLAIAFG++    G+ + V KNLRVC DCH   K 
Sbjct: 569 VSNTSSVCHDVDEEEKEMTLRVHSEKLAIAFGIMNTVPGSTVNVVKNLRVCSDCHNVIKL 628

Query: 515 ISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           IS I  RE +VRD  RFHHFKDG CSCGDYW
Sbjct: 629 ISKIVDREFVVRDAKRFHHFKDGGCSCGDYW 659



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 106/438 (24%), Positives = 199/438 (45%), Gaps = 68/438 (15%)

Query: 29  LFDK-IPQPDVVSYNIMLSCILLNSDDVVA--AFDFFQRLPIKDTAS--------WNTMI 77
           LF++ + + DV S+N +++ +  + D   A  AF   ++L +  T S         +++ 
Sbjct: 31  LFNRYVDKTDVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSSLF 90

Query: 78  SGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTA 137
             F  K+   +A   F+   + +    SA+I  Y  CG+L+ A ++F   P + +V+WT+
Sbjct: 91  DIFSGKQTHQQA---FVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRDIVSWTS 147

Query: 138 MISGYMKFGYVENSWAEDGLKLLRMMI------GLGIRPNASSLSSVLLGCSHLSSLQLG 191
           MI GY       N  A D + L + ++         +  ++  L SV+  CS + +  L 
Sbjct: 148 MIRGYDL-----NGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLT 202

Query: 192 KQVHQLVFKSPLCKDTTALTPLISMYCKCGD--LEDACKLFLEIQRKDVVTWNAMISGYA 249
           + +H  V K    +  +    L+  Y K G+  +  A K+F +I  KD V++N+++S YA
Sbjct: 203 ESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYA 262

Query: 250 QHGKGEKALRLFDKM-KDEGMKPDSITFVALLLACNHAGLVDLGIQYFD----------- 297
           Q G   +A  +F ++ K++ +  ++IT   +LLA +H+G + +G    D           
Sbjct: 263 QSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDV 322

Query: 298 ----SMVNDYGIAAKPD---------------HYTCMVDLLGRAGKLVEAVDLIKKM--- 335
               S+++ Y    + +                +T M+   G  G   +A++L   M   
Sbjct: 323 IVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDS 382

Query: 336 PFKPQPAIFGTLLSACRVHKRLDLAE---FAAM-NLFNLNPA-NAAGCYVQLANIYAAMK 390
             +P    F ++L+AC  H  L +     F AM   F + P     GC V L      ++
Sbjct: 383 GVRPNYITFVSVLAACS-HAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQ 441

Query: 391 KWDDVARIRLSMKENNVV 408
           K  D+ + R+ MK ++++
Sbjct: 442 KAYDLIQ-RMKMKPDSII 458


>gi|30794008|gb|AAP40452.1| unknown protein [Arabidopsis thaliana]
          Length = 890

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 218/547 (39%), Positives = 303/547 (55%), Gaps = 58/547 (10%)

Query: 51  NSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK-----NSVSWS 105
           N   V++    F  +  +    WN MI+G+ Q ++  +A  LF+ M E      NS + +
Sbjct: 350 NCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMA 409

Query: 106 AMISG-----------------------------------YIECGQLDKAVELFKVAPVK 130
            ++                                     Y   G++D A+ +F     +
Sbjct: 410 GVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDR 469

Query: 131 SVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGL-----------GIRPNASSLSSVL 179
            +V W  MI+GY     V +   ED L LL  M  L            ++PN+ +L ++L
Sbjct: 470 DLVTWNTMITGY-----VFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTIL 524

Query: 180 LGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVV 239
             C+ LS+L  GK++H    K+ L  D    + L+ MY KCG L+ + K+F +I +K+V+
Sbjct: 525 PSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVI 584

Query: 240 TWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSM 299
           TWN +I  Y  HG G++A+ L   M  +G+KP+ +TF+++  AC+H+G+VD G++ F  M
Sbjct: 585 TWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVM 644

Query: 300 VNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPA-IFGTLLSACRVHKRLD 358
             DYG+    DHY C+VDLLGRAG++ EA  L+  MP     A  + +LL A R+H  L+
Sbjct: 645 KPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLE 704

Query: 359 LAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEV 418
           + E AA NL  L P N A  YV LANIY++   WD    +R +MKE  V K PG SWIE 
Sbjct: 705 IGEIAAQNLIQLEP-NVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIEH 763

Query: 419 GTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHS 478
           G  VH+F +GD  HP+   +   L+ L +RM+  GYVPD    LH V E+ KE LL  HS
Sbjct: 764 GDEVHKFVAGDSSHPQSEKLSGYLETLWERMRKEGYVPDTSCVLHNVEEDEKEILLCGHS 823

Query: 479 EKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGT 538
           EKLAIAFG++    GT IRV KNLRVC DCH ATK+IS I  REII+RD  RFH FK+GT
Sbjct: 824 EKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLATKFISKIVDREIILRDVRRFHRFKNGT 883

Query: 539 CSCGDYW 545
           CSCGDYW
Sbjct: 884 CSCGDYW 890



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 83/341 (24%), Positives = 155/341 (45%), Gaps = 17/341 (4%)

Query: 6   TVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRL 65
           +V   + L    ++ G      ++FD+I + + VS+N ++S +       +A   F   L
Sbjct: 132 SVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCML 191

Query: 66  PIKDTASWNTMISGFVQKKNMAKARDLFLAMP---------EKNSVSWSAMISGYIECGQ 116
                 S  T++S      N+     L +            E NS   + +++ Y + G+
Sbjct: 192 DENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGELNSFIINTLVAMYGKLGK 251

Query: 117 LDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLS 176
           L  +  L      + +V W  ++S        +N    + L+ LR M+  G+ P+  ++S
Sbjct: 252 LASSKVLLGSFGGRDLVTWNTVLSSL-----CQNEQLLEALEYLREMVLEGVEPDEFTIS 306

Query: 177 SVLLGCSHLSSLQLGKQVHQLVFKS-PLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR 235
           SVL  CSHL  L+ GK++H    K+  L +++   + L+ MYC C  +    ++F  +  
Sbjct: 307 SVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFD 366

Query: 236 KDVVTWNAMISGYAQHGKGEKALRLFDKMKDE-GMKPDSITFVALLLACNHAGLVDLGIQ 294
           + +  WNAMI+GY+Q+   ++AL LF  M++  G+  +S T   ++ AC  +G      +
Sbjct: 367 RKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRK-E 425

Query: 295 YFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335
                V   G+         ++D+  R GK+  A+ +  KM
Sbjct: 426 AIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKM 466



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 60/204 (29%), Positives = 103/204 (50%), Gaps = 6/204 (2%)

Query: 163 MIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDT-TALTPLISMYCKCG 221
           MI LGI+P+  +  ++L   + L  ++LGKQ+H  V+K     D+ T    L+++Y KCG
Sbjct: 88  MIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCG 147

Query: 222 DLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLL 281
           D     K+F  I  ++ V+WN++IS      K E AL  F  M DE ++P S T V+++ 
Sbjct: 148 DFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVT 207

Query: 282 ACNHAGLVDLGIQYFDSMVNDYGIAAKPDH---YTCMVDLLGRAGKLVEAVDLIKKMPFK 338
           AC++  + + G+      V+ YG+     +      +V + G+ GKL  +  L+     +
Sbjct: 208 ACSNLPMPE-GLM-MGKQVHAYGLRKGELNSFIINTLVAMYGKLGKLASSKVLLGSFGGR 265

Query: 339 PQPAIFGTLLSACRVHKRLDLAEF 362
                   L S C+  + L+  E+
Sbjct: 266 DLVTWNTVLSSLCQNEQLLEALEY 289


>gi|296085005|emb|CBI28420.3| unnamed protein product [Vitis vinifera]
          Length = 631

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 213/493 (43%), Positives = 287/493 (58%), Gaps = 27/493 (5%)

Query: 54  DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE 113
           ++  A   F  +  KD   WN++I G                    N VSW+AMI+GY++
Sbjct: 165 EIDCARKVFDGMIDKDVVLWNSLIDG--------------------NLVSWNAMINGYMK 204

Query: 114 CGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNAS 173
            G  D A+ELF   P+  +V W  MI+GY       N    D +K+  MM+ LG RP+ +
Sbjct: 205 SGDFDSALELFYQMPIWDLVTWNLMIAGYEL-----NGQFMDAVKMFFMMLKLGSRPSHA 259

Query: 174 SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI 233
           +L SVL   S L+ L  G+ +H  + K+    D    T LI MY KCG +E A  +F  I
Sbjct: 260 TLVSVLSAVSGLAVLGKGRWIHSYMEKNGFELDGILGTSLIEMYAKCGCIESALTVFRAI 319

Query: 234 QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGI 293
           Q+K V  W A+I G   HG    AL LF +M   G+KP++I F+ +L ACNHAGLVD G 
Sbjct: 320 QKKKVGHWTAIIVGLGIHGMANHALALFLEMCKTGLKPNAIIFIGVLNACNHAGLVDDGR 379

Query: 294 QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRV 353
           QYFD M+N+Y I    +HY C+VD+L RAG L EA + I+ MP  P   I+ +LL   R 
Sbjct: 380 QYFDMMMNEYKIEPTLEHYGCLVDILCRAGHLEEAKNTIENMPISPNKVIWMSLLGGSRN 439

Query: 354 HKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGY 413
           H ++D+ E+AA  +  + P    GCY+ L+N+YAA   W+ V+ +R  M +    K PG 
Sbjct: 440 HGKIDIGEYAAQRVIEVAP-ETIGCYILLSNMYAASGMWEKVSHVREMMYKRGFRKDPGC 498

Query: 414 SWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAV-GEEVKEQ 472
           S +E    +HEF  GD  HP+   I+ K+ E+++++K  G+VPD    L  + GE+ KE 
Sbjct: 499 SSVEHKGTLHEFIVGDISHPQTKEIYAKMSEMKEKLKCVGHVPDTTQVLLCIEGEKEKEA 558

Query: 473 LLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFH 532
            L  HSE+LAIAFGLI V  G PIR+ KNLRVC DCH  TK +S I  REIIVRD  RFH
Sbjct: 559 ELENHSERLAIAFGLINVKPGIPIRIMKNLRVCNDCHSVTKLLSKIYSREIIVRDNCRFH 618

Query: 533 HFKDGTCSCGDYW 545
           HFK+G+CSC DYW
Sbjct: 619 HFKNGSCSCMDYW 631



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/159 (33%), Positives = 82/159 (51%), Gaps = 17/159 (10%)

Query: 117 LDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLS 176
           L  A  +F     +S++ W  +I  Y     VEN ++ DG+ L   ++   + P+  +L 
Sbjct: 66  LGYARSIFDRIQRRSLIHWNTIIKCY-----VENQFSHDGIVLFHELVHEYL-PDNFTLP 119

Query: 177 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK 236
            V+ GC+ L  +Q GKQ+H L  K     D      L++MY KCG+++ A K+F  +  K
Sbjct: 120 CVIKGCARLGVVQEGKQIHGLALKIGFGSDVFVQGSLVNMYSKCGEIDCARKVFDGMIDK 179

Query: 237 DV-----------VTWNAMISGYAQHGKGEKALRLFDKM 264
           DV           V+WNAMI+GY + G  + AL LF +M
Sbjct: 180 DVVLWNSLIDGNLVSWNAMINGYMKSGDFDSALELFYQM 218



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 68/284 (23%), Positives = 114/284 (40%), Gaps = 56/284 (19%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCIL----------LNSDDVVAAFDFFQRLPIKDT 70
           G++  A+++FD +   DVV +N ++   L          + S D  +A + F ++PI D 
Sbjct: 164 GEIDCARKVFDGMIDKDVVLWNSLIDGNLVSWNAMINGYMKSGDFDSALELFYQMPIWDL 223

Query: 71  ASWNTMISGFVQKKNMAKARDLFLAM---------------------------------- 96
            +WN MI+G+        A  +F  M                                  
Sbjct: 224 VTWNLMIAGYELNGQFMDAVKMFFMMLKLGSRPSHATLVSVLSAVSGLAVLGKGRWIHSY 283

Query: 97  PEKN-----SVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENS 151
            EKN      +  +++I  Y +CG ++ A+ +F+    K V  WTA+I G    G     
Sbjct: 284 MEKNGFELDGILGTSLIEMYAKCGCIESALTVFRAIQKKKVGHWTAIIVGLGIHGM---- 339

Query: 152 WAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTA-L 210
            A   L L   M   G++PNA     VL  C+H   +  G+Q   ++      + T    
Sbjct: 340 -ANHALALFLEMCKTGLKPNAIIFIGVLNACNHAGLVDDGRQYFDMMMNEYKIEPTLEHY 398

Query: 211 TPLISMYCKCGDLEDACKLFLEIQ-RKDVVTWNAMISGYAQHGK 253
             L+ + C+ G LE+A      +    + V W +++ G   HGK
Sbjct: 399 GCLVDILCRAGHLEEAKNTIENMPISPNKVIWMSLLGGSRNHGK 442



 Score = 47.4 bits (111), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 54/111 (48%), Gaps = 3/111 (2%)

Query: 186 SSLQLGKQVHQLVFKSPLCKDTTALTPLISMYC--KCGDLEDACKLFLEIQRKDVVTWNA 243
           S+ Q  +Q+H    K+ +       + L+++Y   K  DL  A  +F  IQR+ ++ WN 
Sbjct: 27  SAPQEVEQLHAFSLKTAIFNHPFVSSRLLALYSDPKINDLGYARSIFDRIQRRSLIHWNT 86

Query: 244 MISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ 294
           +I  Y ++      + LF ++  E + PD+ T   ++  C   G+V  G Q
Sbjct: 87  IIKCYVENQFSHDGIVLFHELVHEYL-PDNFTLPCVIKGCARLGVVQEGKQ 136


>gi|357495039|ref|XP_003617808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519143|gb|AET00767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 811

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 209/543 (38%), Positives = 319/543 (58%), Gaps = 16/543 (2%)

Query: 11  SVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDT 70
           ++L  +AK  G++ DAQ LF+++P+ D++ +++M++     SD    A D F R+     
Sbjct: 277 ALLELYAKS-GEIIDAQRLFEEMPKTDLIPWSLMIA-RYAQSDRSKEALDLFLRMRQTSV 334

Query: 71  ASWNTMISGFVQKKNMAKARDLFLAMP--------EKNSVSWSAMISGYIECGQLDKAVE 122
              N   +  +Q    + + DL   +           N    +A++  Y +CG+++ +++
Sbjct: 335 VPNNFTFASVLQACASSVSLDLGKQIHSCVLKFGLNSNVFVSNAIMDVYAKCGEIENSMK 394

Query: 123 LFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGC 182
           LF+  P ++ V W  +I GY++ G       E  + L   M+   ++P   + SSVL   
Sbjct: 395 LFEELPDRNDVTWNTIIVGYVQLGD-----GERAMNLFTHMLEHDMQPTEVTYSSVLRAS 449

Query: 183 SHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWN 242
           + L++L+ G Q+H L  K+   KDT     LI MY KCG + DA   F ++ ++D V+WN
Sbjct: 450 ASLAALEPGLQIHSLTIKTMYNKDTVVANSLIDMYAKCGRINDARLTFDKMNKRDEVSWN 509

Query: 243 AMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVND 302
           AMI GY+ HG   +AL LFD M+    KP+ +TFV +L AC++AGL+  G  +F+SM  D
Sbjct: 510 AMICGYSMHGMSMEALNLFDMMQHTDCKPNKLTFVGVLSACSNAGLLYKGQAHFESMSKD 569

Query: 303 YGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEF 362
           Y I    +HYTCMV LLGR G+  EA+ LI ++ ++P   ++  LL AC +HK++DL   
Sbjct: 570 YDIKPCIEHYTCMVWLLGRLGRFDEAMKLIGEIAYQPSVMVWRALLGACVIHKKVDLGRV 629

Query: 363 AAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVV 422
            A ++  + P + A  +V L+N+YA   +WD+VA +R  M++  V K PG SW+E   VV
Sbjct: 630 CAQHVLEMEPHDDAT-HVLLSNMYATAGRWDNVAFVRKYMQKKKVRKEPGLSWVENQGVV 688

Query: 423 HEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLA 482
           H F  GD  HP++  I   L+ L K+ + AGYVPD    L  V ++ KE+ L  HSE+LA
Sbjct: 689 HYFSVGDTSHPDIKLICAMLEWLNKKTRDAGYVPDCNAVLLDVQDDEKERHLWVHSERLA 748

Query: 483 IAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCG 542
           +A+GLI+ PL   IR+ KNLR+C DCH   K IS + +REI++RD  RFHHF+ G CSCG
Sbjct: 749 LAYGLIRTPLSCSIRIIKNLRICIDCHTVMKLISKVVQREIVIRDINRFHHFRHGVCSCG 808

Query: 543 DYW 545
           DYW
Sbjct: 809 DYW 811



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 89/334 (26%), Positives = 162/334 (48%), Gaps = 15/334 (4%)

Query: 11  SVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRL----- 65
           ++L  F  Q   L+DA +LFD++PQ + +S+ + L+           A  F  R+     
Sbjct: 74  NILLNFYVQSNSLQDASKLFDEMPQTNTISF-VTLAQGYSRDHQFHQALHFILRIFKEGH 132

Query: 66  ---PIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVE 122
              P   T     ++S  +          ++      ++   +A+I  Y   G +D A  
Sbjct: 133 EVNPFVFTTLLKLLVSMDLAHLCWTLHACVYKLGHHADAFVGTALIDAYSVRGNVDVARH 192

Query: 123 LFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGC 182
           +F     K +V+WT M++ Y      EN + E+ L+L   M  +G +PN  ++S  L  C
Sbjct: 193 VFDDICCKDMVSWTGMVACY-----AENCFYEESLQLFNQMRIMGYKPNNFTISGALKSC 247

Query: 183 SHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWN 242
             L +  +GK VH    K     D      L+ +Y K G++ DA +LF E+ + D++ W+
Sbjct: 248 LGLEAFNVGKSVHGCALKGCYDHDLFVGIALLELYAKSGEIIDAQRLFEEMPKTDLIPWS 307

Query: 243 AMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVND 302
            MI+ YAQ  + ++AL LF +M+   + P++ TF ++L AC  +  +DLG Q   S V  
Sbjct: 308 LMIARYAQSDRSKEALDLFLRMRQTSVVPNNFTFASVLQACASSVSLDLGKQ-IHSCVLK 366

Query: 303 YGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 336
           +G+ +       ++D+  + G++  ++ L +++P
Sbjct: 367 FGLNSNVFVSNAIMDVYAKCGEIENSMKLFEELP 400



 Score = 45.8 bits (107), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 45/90 (50%)

Query: 191 GKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQ 250
           GK +H  + K     D  A   L++ Y +   L+DA KLF E+ + + +++  +  GY++
Sbjct: 54  GKHLHCHILKRGTSLDLFAQNILLNFYVQSNSLQDASKLFDEMPQTNTISFVTLAQGYSR 113

Query: 251 HGKGEKALRLFDKMKDEGMKPDSITFVALL 280
             +  +AL    ++  EG + +   F  LL
Sbjct: 114 DHQFHQALHFILRIFKEGHEVNPFVFTTLL 143


>gi|357516765|ref|XP_003628671.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
 gi|355522693|gb|AET03147.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
          Length = 659

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 208/490 (42%), Positives = 287/490 (58%), Gaps = 13/490 (2%)

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAV 121
           F  +  KD  SWN+M++G+        A ++   M +         ++  +       + 
Sbjct: 177 FDEMIWKDVVSWNSMVAGYAHNMRFDDALEICREMEDYGQKPDGCTMASLMPAVANTSSE 236

Query: 122 ELFKVAPV------KSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSL 175
            +  V  +      K++++W  MI  YMK     NS     + L   M    + P+A + 
Sbjct: 237 NVLYVEKIFVNLERKNLISWNVMIRVYMK-----NSLPTQAVDLYLQMEKCRVEPDAITF 291

Query: 176 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR 235
           +SVL  C  LS+L LG+++H+ V K  LC +      LI MY +CG L+DA ++F  ++ 
Sbjct: 292 ASVLPACGDLSALLLGRRIHEYVEKKKLCPNLLLENSLIDMYARCGCLDDAKRVFDRMKF 351

Query: 236 KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQY 295
           +DV +W ++IS Y   G+G  A+ LF +M + G  PDSI FVA+L AC+H+GL+D G  Y
Sbjct: 352 RDVASWTSLISAYGMTGQGCNAVALFTEMLNSGQAPDSIAFVAILSACSHSGLLDEGRIY 411

Query: 296 FDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHK 355
           F  M +DY I  + +HY C+VDLLGRAG++ EA ++IK+MP +P   ++ TLLS+CRV  
Sbjct: 412 FKQMTDDYRITPRIEHYACLVDLLGRAGRVDEAYNIIKQMPIEPNERVWATLLSSCRVFT 471

Query: 356 RLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSW 415
            +D+   AA NL  L P   +G YV L+NIYA   +W +V  IR  MK   + K PG S 
Sbjct: 472 NMDIGILAADNLLQLAPEQ-SGYYVLLSNIYAKAGRWKEVTEIRSVMKRKKIRKTPGISN 530

Query: 416 IEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLL 475
           +E+   VH F +GD  HP+   I+E+L  L  +MK  GYVP+ + ALH V EE KE  L 
Sbjct: 531 VELNNQVHTFLAGDTSHPQSKEIYEELGVLVAKMKELGYVPETDSALHDVEEEDKEGHLA 590

Query: 476 FHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFK 535
            HSEKLAI F L+       IR+ KNLRVCGDCH A K IS I +REIIVRDT RFHHFK
Sbjct: 591 VHSEKLAIVFALLNTQ-EYQIRITKNLRVCGDCHIAAKLISKIVEREIIVRDTNRFHHFK 649

Query: 536 DGTCSCGDYW 545
           DG CSCGDYW
Sbjct: 650 DGVCSCGDYW 659



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 90/329 (27%), Positives = 150/329 (45%), Gaps = 31/329 (9%)

Query: 92  LFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENS 151
           +F     +N      ++  Y  CG+     ++F     ++VV +  MI  Y     V N 
Sbjct: 44  IFYLNSHQNPSLGIKLMRSYAACGEPGLTRKVFDEMSDRNVVFYNVMIRSY-----VNNH 98

Query: 152 WAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALT 211
             +DGL + R M+  G RP+  +   VL  CS   +L+ G  +H  V K  L  +     
Sbjct: 99  RYDDGLLVFREMVNGGFRPDNYTYPCVLKACSCSENLRYGLLIHGDVLKVGLDFNLFVGN 158

Query: 212 PLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKP 271
            LI+MY KCG L +A ++F E+  KDVV+WN+M++GYA + + + AL +  +M+D G KP
Sbjct: 159 GLIAMYGKCGCLFEARRVFDEMIWKDVVSWNSMVAGYAHNMRFDDALEICREMEDYGQKP 218

Query: 272 DSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDL 331
           D  T  +L+ A   A      + Y + +  +         +  M+ +  +     +AVDL
Sbjct: 219 DGCTMASLMPAV--ANTSSENVLYVEKIFVNLE-RKNLISWNVMIRVYMKNSLPTQAVDL 275

Query: 332 ---IKKMPFKPQPAIFGTLLSAC----------RVHKRLDLAEFAAMNLFNLNPANAAGC 378
              ++K   +P    F ++L AC          R+H+ ++  +       NL   N+   
Sbjct: 276 YLQMEKCRVEPDAITFASVLPACGDLSALLLGRRIHEYVEKKKLCP----NLLLENS--- 328

Query: 379 YVQLANIYAAMKKWDDVARIRLSMKENNV 407
              L ++YA     DD  R+   MK  +V
Sbjct: 329 ---LIDMYARCGCLDDAKRVFDRMKFRDV 354



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 84/386 (21%), Positives = 159/386 (41%), Gaps = 86/386 (22%)

Query: 4   KTTVNWNSVLAGFAKQ---RGKLKDAQELFDKIPQPDVVSY-NIMLSCILLNSDDVVAAF 59
           K  V+WNS++AG+A        L+  +E+ D   +PD  +  ++M +    +S++V+   
Sbjct: 183 KDVVSWNSMVAGYAHNMRFDDALEICREMEDYGQKPDGCTMASLMPAVANTSSENVLYVE 242

Query: 60  DFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWS---------- 105
             F  L  K+  SWN MI  +++     +A DL+L M     E ++++++          
Sbjct: 243 KIFVNLERKNLISWNVMIRVYMKNSLPTQAVDLYLQMEKCRVEPDAITFASVLPACGDLS 302

Query: 106 -------------------------AMISGYIECGQLDKAVELFKVAPVKSVVAWTAMIS 140
                                    ++I  Y  CG LD A  +F     + V +WT++IS
Sbjct: 303 ALLLGRRIHEYVEKKKLCPNLLLENSLIDMYARCGCLDDAKRVFDRMKFRDVASWTSLIS 362

Query: 141 GYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK 200
            Y   G   N+ A     L   M+  G  P++ +  ++L  CSH   L  G+    + FK
Sbjct: 363 AYGMTGQGCNAVA-----LFTEMLNSGQAPDSIAFVAILSACSHSGLLDEGR----IYFK 413

Query: 201 SPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRL 260
                D   +TP I  Y        AC                ++    + G+ ++A  +
Sbjct: 414 Q--MTDDYRITPRIEHY--------AC----------------LVDLLGRAGRVDEAYNI 447

Query: 261 FDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLG 320
             +M    ++P+   +  LL +C     +D+GI   D+++       +  +Y  + ++  
Sbjct: 448 IKQMP---IEPNERVWATLLSSCRVFTNMDIGILAADNLLQ--LAPEQSGYYVLLSNIYA 502

Query: 321 RAGKLVEAVDL---IKKMPFKPQPAI 343
           +AG+  E  ++   +K+   +  P I
Sbjct: 503 KAGRWKEVTEIRSVMKRKKIRKTPGI 528


>gi|242096366|ref|XP_002438673.1| hypothetical protein SORBIDRAFT_10g024090 [Sorghum bicolor]
 gi|241916896|gb|EER90040.1| hypothetical protein SORBIDRAFT_10g024090 [Sorghum bicolor]
          Length = 588

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 204/500 (40%), Positives = 299/500 (59%), Gaps = 26/500 (5%)

Query: 65  LPIKDTASWNTMISGFVQKKNMAKARDLFLAMP-------------------EKNSVSWS 105
           +P ++  SW  MISG+ Q +   +A +LF+ M                    E +    S
Sbjct: 96  MPERNVVSWTAMISGYSQNERPDQAWELFIMMLRAGIHQVKQVHAFAVKTNFELHMFVGS 155

Query: 106 AMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIG 165
           +++  Y +   + +A  +F + P + VV++TA++SGY + G       E+ L L R++  
Sbjct: 156 SLLDMYAKSENIQEARRVFDMLPARDVVSYTAILSGYTQLGL-----DEEALDLFRLLYN 210

Query: 166 LGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLED 225
            G++ N  + +++L   S LSS+  GKQVH L+ +  L         LI MY KCG L  
Sbjct: 211 EGMQCNQVTFTALLNALSGLSSMDYGKQVHGLILRRELPFFMALQNSLIDMYSKCGKLLY 270

Query: 226 ACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNH 285
           + ++F  +  + VV+WNAM+ GY +HG   + ++LF  M DE +KPDS+T +A+L   +H
Sbjct: 271 SRRVFDSMPERSVVSWNAMLMGYGRHGLAHEVVQLFRSMCDE-VKPDSVTLLAVLSGYSH 329

Query: 286 AGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFG 345
            GLVD G+  FD +V +       +HY C++DLLGR+G+L +A++LI+KMPF+P  AI+G
Sbjct: 330 GGLVDEGLDMFDHIVKEQSTLLNTEHYGCVIDLLGRSGQLQKALNLIEKMPFQPTRAIWG 389

Query: 346 TLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKEN 405
           +LL ACRVH  + + EF A  L ++ P NA G YV L+NIYAA   W DV R+R  M + 
Sbjct: 390 SLLGACRVHTNVHVGEFVAQKLLDIEPENA-GNYVILSNIYAAAGMWKDVFRVRKLMLKK 448

Query: 406 NVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAV 465
            V+K PG SW+ +  V+H F S +R HP    I+ K+KE+   +K AG+VPDL   LH V
Sbjct: 449 TVIKEPGRSWMILDKVIHTFHSCERFHPRKEDINAKIKEIYVAIKAAGFVPDLSCVLHDV 508

Query: 466 GEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIV 525
            +E KE++LL HSEKLAI FGL+  P    I+V KNLR+C DCH   K++S +  REI +
Sbjct: 509 DDEQKERMLLGHSEKLAITFGLMSTPSDLTIQVMKNLRICVDCHNFAKFVSKVYGREISL 568

Query: 526 RDTTRFHHFKDGTCSCGDYW 545
           RD  RFH   +G C+CGDYW
Sbjct: 569 RDKNRFHLITEGACTCGDYW 588



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/229 (28%), Positives = 111/229 (48%), Gaps = 32/229 (13%)

Query: 111 YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRP 170
           Y  CG L+ A  +    P ++VV+WTAMISGY +    + +W     +L  MM+  GI  
Sbjct: 80  YARCGALEDARNVLDGMPERNVVSWTAMISGYSQNERPDQAW-----ELFIMMLRAGIHQ 134

Query: 171 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 230
                                KQVH    K+         + L+ MY K  ++++A ++F
Sbjct: 135 V--------------------KQVHAFAVKTNFELHMFVGSSLLDMYAKSENIQEARRVF 174

Query: 231 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVD 290
             +  +DVV++ A++SGY Q G  E+AL LF  + +EGM+ + +TF ALL A +    +D
Sbjct: 175 DMLPARDVVSYTAILSGYTQLGLDEEALDLFRLLYNEGMQCNQVTFTALLNALSGLSSMD 234

Query: 291 LGIQYFDSMVND---YGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 336
            G Q    ++     + +A +      ++D+  + GKL+ +  +   MP
Sbjct: 235 YGKQVHGLILRRELPFFMALQ----NSLIDMYSKCGKLLYSRRVFDSMP 279



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 49/88 (55%)

Query: 182 CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTW 241
           C    +L+ G+QVH  +  +         T L+ MY +CG LEDA  +   +  ++VV+W
Sbjct: 45  CVERRALREGRQVHARMVAAGYRPALYLATRLVIMYARCGALEDARNVLDGMPERNVVSW 104

Query: 242 NAMISGYAQHGKGEKALRLFDKMKDEGM 269
            AMISGY+Q+ + ++A  LF  M   G+
Sbjct: 105 TAMISGYSQNERPDQAWELFIMMLRAGI 132



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 62/288 (21%), Positives = 120/288 (41%), Gaps = 65/288 (22%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDV--------------VSYNIMLS 46
           M  +  V+W ++++G++ Q  +   A ELF  + +  +                 ++ + 
Sbjct: 96  MPERNVVSWTAMISGYS-QNERPDQAWELFIMMLRAGIHQVKQVHAFAVKTNFELHMFVG 154

Query: 47  CILLN----SDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK--- 99
             LL+    S+++  A   F  LP +D  S+  ++SG+ Q     +A DLF  +  +   
Sbjct: 155 SSLLDMYAKSENIQEARRVFDMLPARDVVSYTAILSGYTQLGLDEEALDLFRLLYNEGMQ 214

Query: 100 -NSVSWSAMISG-----------------------------------YIECGQLDKAVEL 123
            N V+++A+++                                    Y +CG+L  +  +
Sbjct: 215 CNQVTFTALLNALSGLSSMDYGKQVHGLILRRELPFFMALQNSLIDMYSKCGKLLYSRRV 274

Query: 124 FKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCS 183
           F   P +SVV+W AM+ GY + G      A + ++L R M    ++P++ +L +VL G S
Sbjct: 275 FDSMPERSVVSWNAMLMGYGRHGL-----AHEVVQLFRSMCD-EVKPDSVTLLAVLSGYS 328

Query: 184 HLSSLQLG-KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 230
           H   +  G      +V +     +T     +I +  + G L+ A  L 
Sbjct: 329 HGGLVDEGLDMFDHIVKEQSTLLNTEHYGCVIDLLGRSGQLQKALNLI 376


>gi|224129622|ref|XP_002328762.1| predicted protein [Populus trichocarpa]
 gi|222839060|gb|EEE77411.1| predicted protein [Populus trichocarpa]
          Length = 632

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 222/571 (38%), Positives = 318/571 (55%), Gaps = 47/571 (8%)

Query: 17  AKQRGKLKDAQELFDKIPQPDVVSYNIML------------SCILLNS----DDVVAAFD 60
           A     L  A +LFD IPQPD   YN ++            S +LL S    + V+    
Sbjct: 67  ASTSDALTYALKLFDSIPQPDAFLYNTIIKGFLHSQLLPTNSILLLYSHMLQNSVLPNNF 126

Query: 61  FFQRLPIK---------------------DTASWNTMISGFVQKKNMAKARDLFLAMPEK 99
            F  L I                       +   N++I  +V  + + +AR +F  +P  
Sbjct: 127 TFPSLLIACRKIQHGMQIHAHLFKFGFGAHSVCLNSLIHMYVTFQALEEARRVFHTIPHP 186

Query: 100 NSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKL 159
           +SVSW+++ISGY + G +D+A  +F++ P K+  +W AM++ Y++     N + E     
Sbjct: 187 DSVSWTSLISGYSKWGLIDEAFTIFQLMPQKNSASWNAMMAAYVQ----TNRFHEAFALF 242

Query: 160 LRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCK 219
            RM        +    +++L  C+ L +L  GK +H+ + ++ +  D+   T ++ MYCK
Sbjct: 243 DRMKAENNNVLDKFVATTMLSACTGLGALDQGKWIHEYIKRNGIELDSKLTTAIVDMYCK 302

Query: 220 CGDLEDACKLF--LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFV 277
           CG LE A ++F  L +  + + +WN MI G A HG GE A++LF +M+ + + PD ITF+
Sbjct: 303 CGCLEKALQVFHSLPLPCRWISSWNCMIGGLAMHGNGEAAIQLFKEMERQRVAPDDITFL 362

Query: 278 ALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPF 337
            LL AC H+GLV+ G  YF  M+  YGI  + +H+ CMVDLLGRAG + EA  LI +MP 
Sbjct: 363 NLLTACAHSGLVEEGRNYFSYMIRVYGIEPRMEHFGCMVDLLGRAGMVPEARKLIDEMPV 422

Query: 338 KPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVAR 397
            P   + GTLL AC+ H+ ++L E     +  L P N +G YV LAN+YA   KW+D A+
Sbjct: 423 SPDVTVLGTLLGACKKHRNIELGEEIGRRVIELEP-NNSGRYVLLANLYANAGKWEDAAK 481

Query: 398 IRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPD 457
           +R  M +  V K PG+S IE+   VHEF +G+R HP+   +H K+ E+ + +K  GYV D
Sbjct: 482 VRKLMDDRGVKKAPGFSMIELQGTVHEFIAGERNHPQAKELHAKVYEMLEHLKSVGYVAD 541

Query: 458 LEFALHAVG---EEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKY 514
               LH      EE  E  L +HSEKLAIAFGL +   G  +R+ KNLR+C DCH A K 
Sbjct: 542 TNGVLHGHDFDEEEDGENPLYYHSEKLAIAFGLSRTKPGETLRILKNLRICEDCHHACKL 601

Query: 515 ISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           IS +  REIIVRD TRFH FK G CSC DYW
Sbjct: 602 ISTVFDREIIVRDRTRFHRFKMGQCSCQDYW 632



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 64/312 (20%), Positives = 135/312 (43%), Gaps = 54/312 (17%)

Query: 6   TVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRL 65
           +V+W S+++G++K  G + +A  +F  +PQ +  S+N M++   + ++    AF  F R+
Sbjct: 188 SVSWTSLISGYSKW-GLIDEAFTIFQLMPQKNSASWNAMMAA-YVQTNRFHEAFALFDRM 245

Query: 66  P-----IKDTASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMISGYIECGQ 116
                 + D     TM+S       + + + +   +     E +S   +A++  Y +CG 
Sbjct: 246 KAENNNVLDKFVATTMLSACTGLGALDQGKWIHEYIKRNGIELDSKLTTAIVDMYCKCGC 305

Query: 117 LDKAVELFKVAPV--KSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASS 174
           L+KA+++F   P+  + + +W  MI G    G       E  ++L + M    + P+  +
Sbjct: 306 LEKALQVFHSLPLPCRWISSWNCMIGGLAMHGN-----GEAAIQLFKEMERQRVAPDDIT 360

Query: 175 LSSVLLGCSHLSSLQLGK---------------------------------QVHQLVFKS 201
             ++L  C+H   ++ G+                                 +  +L+ + 
Sbjct: 361 FLNLLTACAHSGLVEEGRNYFSYMIRVYGIEPRMEHFGCMVDLLGRAGMVPEARKLIDEM 420

Query: 202 PLCKDTTALTPLISMYCKCGDL---EDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKAL 258
           P+  D T L  L+    K  ++   E+  +  +E++  +   +  + + YA  GK E A 
Sbjct: 421 PVSPDVTVLGTLLGACKKHRNIELGEEIGRRVIELEPNNSGRYVLLANLYANAGKWEDAA 480

Query: 259 RLFDKMKDEGMK 270
           ++   M D G+K
Sbjct: 481 KVRKLMDDRGVK 492


>gi|15234095|ref|NP_195043.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206840|sp|Q9SMZ2.1|PP347_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g33170
 gi|4455331|emb|CAB36791.1| putative protein [Arabidopsis thaliana]
 gi|7270265|emb|CAB80034.1| putative protein [Arabidopsis thaliana]
 gi|332660786|gb|AEE86186.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 990

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 226/623 (36%), Positives = 330/623 (52%), Gaps = 86/623 (13%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELF----------------------DKIPQPDV 38
           M+ +  ++WNSV+AG A Q G   +A  LF                        +P+   
Sbjct: 376 MSERDLISWNSVIAGIA-QNGLEVEAVCLFMQLLRCGLKPDQYTMTSVLKAASSLPEGLS 434

Query: 39  VSYNIMLSCILLN--SDDVVA---------------AFDFFQRLPIKDTASWNTMISGFV 81
           +S  + +  I +N  SD  V+               A   F+R    D  +WN M++G+ 
Sbjct: 435 LSKQVHVHAIKINNVSDSFVSTALIDAYSRNRCMKEAEILFERHNF-DLVAWNAMMAGYT 493

Query: 82  QKKNMAKARDLFLAMPEKNSVS-------------------------------------W 104
           Q  +  K   LF  M ++   S                                     W
Sbjct: 494 QSHDGHKTLKLFALMHKQGERSDDFTLATVFKTCGFLFAINQGKQVHAYAIKSGYDLDLW 553

Query: 105 --SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRM 162
             S ++  Y++CG +  A   F   PV   VAWT MISG      +EN   E    +   
Sbjct: 554 VSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMISGC-----IENGEEERAFHVFSQ 608

Query: 163 MIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGD 222
           M  +G+ P+  +++++    S L++L+ G+Q+H    K     D    T L+ MY KCG 
Sbjct: 609 MRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCTNDPFVGTSLVDMYAKCGS 668

Query: 223 LEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA 282
           ++DA  LF  I+  ++  WNAM+ G AQHG+G++ L+LF +MK  G+KPD +TF+ +L A
Sbjct: 669 IDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGKETLQLFKQMKSLGIKPDKVTFIGVLSA 728

Query: 283 CNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPA 342
           C+H+GLV    ++  SM  DYGI  + +HY+C+ D LGRAG + +A +LI+ M  +   +
Sbjct: 729 CSHSGLVSEAYKHMRSMHGDYGIKPEIEHYSCLADALGRAGLVKQAENLIESMSMEASAS 788

Query: 343 IFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSM 402
           ++ TLL+ACRV    +  +  A  L  L P +++  YV L+N+YAA  KWD++   R  M
Sbjct: 789 MYRTLLAACRVQGDTETGKRVATKLLELEPLDSSA-YVLLSNMYAAASKWDEMKLARTMM 847

Query: 403 KENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFAL 462
           K + V K PG+SWIEV   +H F   DR + +   I+ K+K++ + +K  GYVP+ +F L
Sbjct: 848 KGHKVKKDPGFSWIEVKNKIHIFVVDDRSNRQTELIYRKVKDMIRDIKQEGYVPETDFTL 907

Query: 463 HAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKRE 522
             V EE KE+ L +HSEKLA+AFGL+  P  TPIRV KNLRVCGDCH A KYI+ +  RE
Sbjct: 908 VDVEEEEKERALYYHSEKLAVAFGLLSTPPSTPIRVIKNLRVCGDCHNAMKYIAKVYNRE 967

Query: 523 IIVRDTTRFHHFKDGTCSCGDYW 545
           I++RD  RFH FKDG CSCGDYW
Sbjct: 968 IVLRDANRFHRFKDGICSCGDYW 990



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 95/337 (28%), Positives = 158/337 (46%), Gaps = 22/337 (6%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
           NS++  + K R K   A+ +FD + + D++S+N +++ I  N  +V A   F Q L    
Sbjct: 354 NSLINMYCKLR-KFGFARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCLFMQLLRCGL 412

Query: 70  TASWNTMISGFVQKKNMAK----ARDLFLAMPEKNSVSWS----AMISGYIECGQLDKAV 121
                TM S      ++ +    ++ + +   + N+VS S    A+I  Y     + +A 
Sbjct: 413 KPDQYTMTSVLKAASSLPEGLSLSKQVHVHAIKINNVSDSFVSTALIDAYSRNRCMKEAE 472

Query: 122 ELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDG---LKLLRMMIGLGIRPNASSLSSV 178
            LF+      +VAW AM++GY +        + DG   LKL  +M   G R +  +L++V
Sbjct: 473 ILFERHNF-DLVAWNAMMAGYTQ--------SHDGHKTLKLFALMHKQGERSDDFTLATV 523

Query: 179 LLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDV 238
              C  L ++  GKQVH    KS    D    + ++ MY KCGD+  A   F  I   D 
Sbjct: 524 FKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDD 583

Query: 239 VTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDS 298
           V W  MISG  ++G+ E+A  +F +M+  G+ PD  T   L  A +    ++ G Q   +
Sbjct: 584 VAWTTMISGCIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHAN 643

Query: 299 MVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335
            +        P   T +VD+  + G + +A  L K++
Sbjct: 644 ALK-LNCTNDPFVGTSLVDMYAKCGSIDDAYCLFKRI 679



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 81/323 (25%), Positives = 145/323 (44%), Gaps = 46/323 (14%)

Query: 7   VNWNSVLAGFAKQRG----KLKDAQELFDKIPQPDVVSYNIMLSCIL---LNSDDVVAAF 59
           V+WNS+LA +A+        ++ A  LF  + Q  V +  + LS +L   L+S  V A+ 
Sbjct: 106 VSWNSILAAYAQSSECVVENIQQAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVWAS- 164

Query: 60  DFFQRLPIKDTASWNTMISG-----FVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIEC 114
           + F     K     +  ++G     +++   + + + LF  MP ++ V W+ M+  Y+E 
Sbjct: 165 ESFHGYACKIGLDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKAYLEM 224

Query: 115 GQLDKAVELFK------VAPVKSVVAWTAMISG------------------------YMK 144
           G  ++A++L        + P +  +   A ISG                        +  
Sbjct: 225 GFKEEAIDLSSAFHSSGLNPNEITLRLLARISGDDSDAGQVKSFANGNDASSVSEIIFRN 284

Query: 145 FG---YVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKS 201
            G   Y+ +      LK    M+   +  +  +   +L     + SL LG+QVH +  K 
Sbjct: 285 KGLSEYLHSGQYSALLKCFADMVESDVECDQVTFILMLATAVKVDSLALGQQVHCMALKL 344

Query: 202 PLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLF 261
            L    T    LI+MYCK      A  +F  +  +D+++WN++I+G AQ+G   +A+ LF
Sbjct: 345 GLDLMLTVSNSLINMYCKLRKFGFARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCLF 404

Query: 262 DKMKDEGMKPDSITFVALLLACN 284
            ++   G+KPD  T  ++L A +
Sbjct: 405 MQLLRCGLKPDQYTMTSVLKAAS 427



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 82/172 (47%), Gaps = 4/172 (2%)

Query: 107 MISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFG--YVENSWAEDGLKLLRMMI 164
           +IS Y +CG L  A  +F   P + +V+W ++++ Y +     VEN   +    L R++ 
Sbjct: 80  LISMYSKCGSLTYARRVFDKMPDRDLVSWNSILAAYAQSSECVVEN--IQQAFLLFRILR 137

Query: 165 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 224
              +  +  +LS +L  C H   +   +  H    K  L  D      L+++Y K G ++
Sbjct: 138 QDVVYTSRMTLSPMLKLCLHSGYVWASESFHGYACKIGLDGDEFVAGALVNIYLKFGKVK 197

Query: 225 DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITF 276
           +   LF E+  +DVV WN M+  Y + G  E+A+ L       G+ P+ IT 
Sbjct: 198 EGKVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAFHSSGLNPNEITL 249



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 77/158 (48%), Gaps = 6/158 (3%)

Query: 186 SSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMI 245
           S L LGK  H  +       +   +  LISMY KCG L  A ++F ++  +D+V+WN+++
Sbjct: 53  SDLMLGKCTHARILTFEENPERFLINNLISMYSKCGSLTYARRVFDKMPDRDLVSWNSIL 112

Query: 246 SGYAQHGKG-----EKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV 300
           + YAQ  +      ++A  LF  ++ + +    +T   +L  C H+G V    + F    
Sbjct: 113 AAYAQSSECVVENIQQAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYV-WASESFHGYA 171

Query: 301 NDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 338
              G+         +V++  + GK+ E   L ++MP++
Sbjct: 172 CKIGLDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYR 209



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 85/381 (22%), Positives = 154/381 (40%), Gaps = 74/381 (19%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVV----AAFDFFQRL 65
           N++++ ++K  G L  A+ +FDK+P  D+VS+N +L+    +S+ VV     AF  F R+
Sbjct: 78  NNLISMYSKC-GSLTYARRVFDKMPDRDLVSWNSILAAYAQSSECVVENIQQAFLLF-RI 135

Query: 66  PIKDTASWNTMI----------SGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECG 115
             +D    + M           SG+V            + +     V+  A+++ Y++ G
Sbjct: 136 LRQDVVYTSRMTLSPMLKLCLHSGYVWASESFHGYACKIGLDGDEFVA-GALVNIYLKFG 194

Query: 116 QLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPN---- 171
           ++ +   LF+  P + VV W  M+  Y++ G+      E+ + L       G+ PN    
Sbjct: 195 KVKEGKVLFEEMPYRDVVLWNLMLKAYLEMGF-----KEEAIDLSSAFHSSGLNPNEITL 249

Query: 172 ------------------------ASSLSSVLLGCSHLSSLQLGKQVHQLV------FKS 201
                                   ASS+S ++     LS      Q   L+       +S
Sbjct: 250 RLLARISGDDSDAGQVKSFANGNDASSVSEIIFRNKGLSEYLHSGQYSALLKCFADMVES 309

Query: 202 PLCKDTTALTPLISMYCKCGDLE-------DACKLFLEIQRKDVVTWNAMISGYAQHGKG 254
            +  D      +++   K   L         A KL L++    +   N++I+ Y +  K 
Sbjct: 310 DVECDQVTFILMLATAVKVDSLALGQQVHCMALKLGLDLM---LTVSNSLINMYCKLRKF 366

Query: 255 EKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTC 314
             A  +FD M +     D I++ +++      GL    +  F  ++       KPD YT 
Sbjct: 367 GFARTVFDNMSER----DLISWNSVIAGIAQNGLEVEAVCLFMQLLR---CGLKPDQYT- 418

Query: 315 MVDLLGRAGKLVEAVDLIKKM 335
           M  +L  A  L E + L K++
Sbjct: 419 MTSVLKAASSLPEGLSLSKQV 439


>gi|115462637|ref|NP_001054918.1| Os05g0212100 [Oryza sativa Japonica Group]
 gi|48475165|gb|AAT44234.1| unknown protein, contains PPR repeat [Oryza sativa Japonica Group]
 gi|113578469|dbj|BAF16832.1| Os05g0212100 [Oryza sativa Japonica Group]
 gi|215695208|dbj|BAG90399.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222630605|gb|EEE62737.1| hypothetical protein OsJ_17540 [Oryza sativa Japonica Group]
          Length = 822

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 209/537 (38%), Positives = 309/537 (57%), Gaps = 41/537 (7%)

Query: 45  LSCILLN---SDDVVAAFDF----FQRLPIKDTASWNTMISGFVQ-----KKNMAKARDL 92
           +SC L++     ++  A D+    F+R+   D  SW  +ISG+VQ      K M    ++
Sbjct: 291 VSCGLVDMYAKSNIEQAMDYANKVFERMRKNDVISWTALISGYVQSGVQENKVMVLFGEM 350

Query: 93  FLAMPEKNSVSWSAMISGYIECGQLDKA----VELFKVAPVKSVVAWTAMISGYMKFGYV 148
                + N +++S+++         D        + K     +     A++S Y + G +
Sbjct: 351 LNESIKPNHITYSSILKACANISDHDSGRQVHAHVIKSNQAAAHTVGNALVSMYAESGCM 410

Query: 149 E------NSWAEDGL--------------KLLRMMIGLGIRPNASSLSSVLLGCSHLSSL 188
           E      N   E  +              ++ RM +G+    ++S+ +S++   + +  L
Sbjct: 411 EEARRVFNQLYERSMISCITEGRDAPLDHRIGRMDMGI----SSSTFASLISAAASVGML 466

Query: 189 QLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGY 248
             G+Q+H +  K+    D      L+SMY +CG LEDAC+ F E++ ++V++W +MISG 
Sbjct: 467 TKGQQLHAMTLKAGFGSDRFVSNSLVSMYSRCGYLEDACRSFNELKDRNVISWTSMISGL 526

Query: 249 AQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK 308
           A+HG  E+AL LF  M   G+KP+ +T++A+L AC+H GLV  G +YF SM  D+G+  +
Sbjct: 527 AKHGYAERALSLFHDMILTGVKPNDVTYIAVLSACSHVGLVREGKEYFRSMQRDHGLIPR 586

Query: 309 PDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLF 368
            +HY CMVDLL R+G + EA++ I +MP K    ++ TLL ACR H  +++ E AA N+ 
Sbjct: 587 MEHYACMVDLLARSGLVKEALEFINEMPLKADALVWKTLLGACRSHDNIEVGEIAAKNVI 646

Query: 369 NLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSG 428
            L P + A  YV L+N+YA    WD+VARIR +M++NN+ K  G SW+EV    HEFR+G
Sbjct: 647 ELEPRDPAP-YVLLSNLYADAGLWDEVARIRSAMRDNNLNKETGLSWMEVENTTHEFRAG 705

Query: 429 DRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLI 488
           D  HP    I+ KL  L   +K  GYVPD    LH + +E+KEQ LL HSEK+A+AFGLI
Sbjct: 706 DTSHPRAQDIYGKLDTLVGEIKGMGYVPDTSIVLHDMSDELKEQYLLQHSEKIAVAFGLI 765

Query: 489 KVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
                 PIR+FKNLRVC DCH A KY+S   +REII+RD+ RFH  KDG CSCG+YW
Sbjct: 766 TTSAPKPIRIFKNLRVCADCHSAIKYMSKATRREIILRDSNRFHRMKDGECSCGEYW 822



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 71/271 (26%), Positives = 126/271 (46%), Gaps = 41/271 (15%)

Query: 69  DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAP 128
           D A  + +I    +  ++A AR +F  + EK  V W+ +IS Y++    ++AVE+F    
Sbjct: 187 DIAVGSALIDMLARNGDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVEIF---- 242

Query: 129 VKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSL 188
                             ++E+                G  P+  ++SS++  C+ L S+
Sbjct: 243 ----------------LDFLED----------------GFEPDRYTMSSMISACTELGSV 270

Query: 189 QLGKQVHQLVFKSPLCKDTTALTPLISMYCKCG---DLEDACKLFLEIQRKDVVTWNAMI 245
           +LG Q+H L  +     D      L+ MY K      ++ A K+F  +++ DV++W A+I
Sbjct: 271 RLGLQLHSLALRMGFASDACVSCGLVDMYAKSNIEQAMDYANKVFERMRKNDVISWTALI 330

Query: 246 SGYAQHGKGE-KALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYG 304
           SGY Q G  E K + LF +M +E +KP+ IT+ ++L AC +    D G Q    ++    
Sbjct: 331 SGYVQSGVQENKVMVLFGEMLNESIKPNHITYSSILKACANISDHDSGRQVHAHVIKSNQ 390

Query: 305 IAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335
            AA       +V +   +G + EA  +  ++
Sbjct: 391 AAAHTVG-NALVSMYAESGCMEEARRVFNQL 420



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 70/241 (29%), Positives = 119/241 (49%), Gaps = 10/241 (4%)

Query: 98  EKNSVSWSAMISGYIECGQLDKAVELFK-VAPVKSVVAWTAMISGYMKFGYVENSWAEDG 156
           ++++V  +++++ Y  CG +  A  +F  +  ++ +V+WTAM S   +     N    + 
Sbjct: 81  DRDAVVANSLLTLYSRCGAVASARNVFDGMRGLRDIVSWTAMASCLAR-----NGAERES 135

Query: 157 LKLLRMMIGLGIRPNASSLSSVLLGC-SHLSSLQLGKQVHQLVFKSPL-CKDTTALTPLI 214
           L L+  M+  G+ PNA +L +V   C  H     +G  V  LV K  L   D    + LI
Sbjct: 136 LLLIGEMLESGLLPNAYTLCAVAHACFPHELYCLVGGVVLGLVHKMGLWGTDIAVGSALI 195

Query: 215 SMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSI 274
            M  + GDL  A K+F  +  K VV W  +IS Y Q    E+A+ +F    ++G +PD  
Sbjct: 196 DMLARNGDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVEIFLDFLEDGFEPDRY 255

Query: 275 TFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKK 334
           T  +++ AC   G V LG+Q   S+    G A+       +VD+  ++  + +A+D   K
Sbjct: 256 TMSSMISACTELGSVRLGLQ-LHSLALRMGFASDACVSCGLVDMYAKS-NIEQAMDYANK 313

Query: 335 M 335
           +
Sbjct: 314 V 314


>gi|225441187|ref|XP_002266244.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 722

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 211/556 (37%), Positives = 329/556 (59%), Gaps = 20/556 (3%)

Query: 3   VKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQ----PDVVSYNIMLS-CILLNSDDV-- 55
           V+  V++N+++ G+A +  + + A  LF ++      PD  ++  + S C +LN  +V  
Sbjct: 174 VRDLVSYNTMIKGYA-EVNQPESALCLFGEMQNSGILPDEFTFVALFSVCSVLNEPNVGK 232

Query: 56  -VAAFDFFQRLPIKDTASWNTMISGFVQKKNMAK-ARDLFLAM-PEKNSVSWSAMISGYI 112
            + A  +     I       + I     K  +   A  +F  M   K++ +WS+M+ GY 
Sbjct: 233 QIHAQVYKNLRSIDSNILLKSAIVDMYAKCGLINIAERVFSTMGTSKSAAAWSSMVCGYA 292

Query: 113 ECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNA 172
            CG+++ A +LF     + V++WTAMISGY + G        + L+L + M  LGI+P+ 
Sbjct: 293 RCGEINVARKLFNHMHERDVISWTAMISGYSQAGQ-----CSEALELFKEMEALGIKPDE 347

Query: 173 SSLSSVLLGCSHLSSLQLGKQV-HQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFL 231
            +L +VL  C+ L +  LGK++ HQ +      ++T     ++ MY KCG ++ A ++F 
Sbjct: 348 VTLVAVLSACARLGAFDLGKRLYHQYIENGVFNQNTILTAAVMDMYAKCGSIDSALEIFR 407

Query: 232 EIQR--KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLV 289
            + +  K    +N+MI+G AQHG GE A+ +F ++   G+KPD +TFV +L AC H+GL+
Sbjct: 408 RVGKNMKTGFVFNSMIAGLAQHGLGETAITVFRELISTGLKPDEVTFVGVLCACGHSGLI 467

Query: 290 DLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLS 349
           + G + F+SM N YGI  + +HY CMVDLLGR G L EA DL++KMPF+    I+  LLS
Sbjct: 468 EEGKKLFESMFNAYGIKPQMEHYGCMVDLLGRYGCLEEAYDLVQKMPFEANSVIWRALLS 527

Query: 350 ACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVK 409
           ACR H  + + E A   L  +   + A  YV L+NI A   +W++  ++R  M+++ + K
Sbjct: 528 ACRTHGNVKIGEIAGQKLLEMEAQHGAR-YVLLSNILADANQWEEARQVRKVMEDHGIRK 586

Query: 410 MPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEV 469
            PG+S+IE+G  +H F + D+ HP+   I   LK++  R+K AGYVP+    +  + EE 
Sbjct: 587 PPGWSYIELGGAIHRFVASDKSHPQGKEIELMLKDMAMRLKSAGYVPNTAQVMFDIDEEE 646

Query: 470 KEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTT 529
           KE ++ +HSEKLA+AFGL+       IR+ KNLR+C DCH+A K +S I  REI VRDT 
Sbjct: 647 KESVVSYHSEKLALAFGLMYCSPTDTIRIVKNLRICADCHKAFKLVSEIYGREITVRDTM 706

Query: 530 RFHHFKDGTCSCGDYW 545
           RFHHF++G+CSC D+W
Sbjct: 707 RFHHFRNGSCSCMDFW 722



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 86/349 (24%), Positives = 149/349 (42%), Gaps = 79/349 (22%)

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK-----NSVSW----------- 104
            F ++   +   WNTMI G+ +  N  +A  L+++M  K     N+ ++           
Sbjct: 66  LFSQIDCPNLFMWNTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLS 125

Query: 105 ------------------------SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMIS 140
                                   +A+I  Y   G L+ A  LF  + V+ +V++  MI 
Sbjct: 126 SLEPGHEVHSHIIKHGFESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIK 185

Query: 141 GYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK 200
                GY E +  E  L L   M   GI P+  +  ++   CS L+   +GKQ+H  V+K
Sbjct: 186 -----GYAEVNQPESALCLFGEMQNSGILPDEFTFVALFSVCSVLNEPNVGKQIHAQVYK 240

Query: 201 S----------------------------------PLCKDTTALTPLISMYCKCGDLEDA 226
           +                                     K   A + ++  Y +CG++  A
Sbjct: 241 NLRSIDSNILLKSAIVDMYAKCGLINIAERVFSTMGTSKSAAAWSSMVCGYARCGEINVA 300

Query: 227 CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHA 286
            KLF  +  +DV++W AMISGY+Q G+  +AL LF +M+  G+KPD +T VA+L AC   
Sbjct: 301 RKLFNHMHERDVISWTAMISGYSQAGQCSEALELFKEMEALGIKPDEVTLVAVLSACARL 360

Query: 287 GLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335
           G  DLG + +   + +            ++D+  + G +  A+++ +++
Sbjct: 361 GAFDLGKRLYHQYIENGVFNQNTILTAAVMDMYAKCGSIDSALEIFRRV 409



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 92/357 (25%), Positives = 141/357 (39%), Gaps = 81/357 (22%)

Query: 117 LDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRP-NASSL 175
           LD +  LF      ++  W  MI GY +     +    + + L   MI  GI P N  + 
Sbjct: 60  LDHSRLLFSQIDCPNLFMWNTMIRGYSR-----SDNPREAIVLYMSMIAKGIAPPNNFTF 114

Query: 176 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR 235
             +L  C+ LSSL+ G +VH  + K     D      LI +Y   G+L  A  LF E   
Sbjct: 115 PFLLNSCARLSSLEPGHEVHSHIIKHGFESDLFVRNALIHLYSVFGNLNLARTLFDESLV 174

Query: 236 KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN----------- 284
           +D+V++N MI GYA+  + E AL LF +M++ G+ PD  TFVAL   C+           
Sbjct: 175 RDLVSYNTMIKGYAEVNQPESALCLFGEMQNSGILPDEFTFVALFSVCSVLNEPNVGKQI 234

Query: 285 HA--------------------------GLVDLGIQYFDSMVNDYGIAAKPD-------- 310
           HA                          GL+++  + F +M      AA           
Sbjct: 235 HAQVYKNLRSIDSNILLKSAIVDMYAKCGLINIAERVFSTMGTSKSAAAWSSMVCGYARC 294

Query: 311 -------------------HYTCMVDLLGRAGKLVEAVDLIKKMP---FKPQPAIFGTLL 348
                               +T M+    +AG+  EA++L K+M     KP       +L
Sbjct: 295 GEINVARKLFNHMHERDVISWTAMISGYSQAGQCSEALELFKEMEALGIKPDEVTLVAVL 354

Query: 349 SACRVHKRLDLA-----EFAAMNLFNLNPANAAGC---YVQLANIYAAMKKWDDVAR 397
           SAC      DL      ++    +FN N    A     Y +  +I +A++ +  V +
Sbjct: 355 SACARLGAFDLGKRLYHQYIENGVFNQNTILTAAVMDMYAKCGSIDSALEIFRRVGK 411



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 59/299 (19%), Positives = 119/299 (39%), Gaps = 55/299 (18%)

Query: 2   NVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDF 61
           ++ + +   S +     + G +  A+ +F  +      +    + C      ++  A   
Sbjct: 244 SIDSNILLKSAIVDMYAKCGLINIAERVFSTMGTSKSAAAWSSMVCGYARCGEINVARKL 303

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP------------------------ 97
           F  +  +D  SW  MISG+ Q    ++A +LF  M                         
Sbjct: 304 FNHMHERDVISWTAMISGYSQAGQCSEALELFKEMEALGIKPDEVTLVAVLSACARLGAF 363

Query: 98  ----------------EKNSVSWSAMISGYIECGQLDKAVELFKVA--PVKSVVAWTAMI 139
                            +N++  +A++  Y +CG +D A+E+F+     +K+   + +MI
Sbjct: 364 DLGKRLYHQYIENGVFNQNTILTAAVMDMYAKCGSIDSALEIFRRVGKNMKTGFVFNSMI 423

Query: 140 SGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVF 199
           +G  + G       E  + + R +I  G++P+  +   VL  C H   ++ GK++ + +F
Sbjct: 424 AGLAQHGL-----GETAITVFRELISTGLKPDEVTFVGVLCACGHSGLIEEGKKLFESMF 478

Query: 200 KS----PLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ-RKDVVTWNAMISGYAQHGK 253
            +    P  +    +  L+  Y   G LE+A  L  ++    + V W A++S    HG 
Sbjct: 479 NAYGIKPQMEHYGCMVDLLGRY---GCLEEAYDLVQKMPFEANSVIWRALLSACRTHGN 534


>gi|357119550|ref|XP_003561500.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Brachypodium distachyon]
          Length = 892

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 207/479 (43%), Positives = 287/479 (59%), Gaps = 8/479 (1%)

Query: 69  DTASWNTMISGFVQKKNMAKARDLFLAM-PEKNSVSWSAMISGYIECGQLDKAVELFKVA 127
           D+     ++  + +  +   AR LF  M P+ + VS +AM++ Y + G LD A  LF   
Sbjct: 420 DSYVATALLGMYARAGDATAARALFDDMLPDPHVVSVTAMLTCYADMGALDDARSLFDGL 479

Query: 128 PVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSS 187
           P K  V W AMI GY + G        + L+L R M+G G+ P+  ++  VL   + L +
Sbjct: 480 PTKDFVCWNAMIDGYTQHGR-----PNEALRLFRRMLGSGVEPDEVTVVLVLSAVAQLGT 534

Query: 188 LQLGKQVHQLVFKSPLCKDTTAL-TPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMIS 246
           ++ GK +H  V  S   + +  + T LI MYCKCG L DA  +F  I  KD+V WNAMI+
Sbjct: 535 VESGKWLHSYVKNSRRVQLSVRVGTALIDMYCKCGSLGDAVDVFHGIGDKDIVVWNAMIN 594

Query: 247 GYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIA 306
           GYA HG   KAL +F + +++G+ P  ITF+ LL AC+H+G+V+ G ++F SM  +YGI 
Sbjct: 595 GYAMHGDSRKALEMFVQSREQGLWPTDITFIGLLNACSHSGMVEEGREFFQSMEREYGID 654

Query: 307 AKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMN 366
            K +HY CMVDLLGRAG + EA  L++ M   P   ++ +LL+ACR+HK + L +  A  
Sbjct: 655 PKIEHYGCMVDLLGRAGLIKEAFCLVQSMKITPDAVMWVSLLAACRLHKNMSLGQQIADY 714

Query: 367 LFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFR 426
           L     AN+ G Y+ L+NIYAA+  W +VAR+R  MK + + K PG S IE+   V+EF 
Sbjct: 715 LVAKGLANS-GMYILLSNIYAAVGNWGEVARVRSMMKASGIQKEPGCSSIEIDREVYEFV 773

Query: 427 SGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFG 486
           +GD  HP    I+  L ++   +K  G+VP  E  LH + E  KE+ L  HSEKLA+AFG
Sbjct: 774 AGDMSHPRTDEIYVMLDKMNGLVKEHGHVPQTELVLHDLDEATKEKALAVHSEKLALAFG 833

Query: 487 LIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           LI    G  I++ KNLR C DCH   K IS I  R+I+ RD  RFHHF DG+CSCGDYW
Sbjct: 834 LISTQPGATIKIVKNLRACSDCHAVLKLISRITGRKIVFRDRNRFHHFVDGSCSCGDYW 892



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 75/254 (29%), Positives = 113/254 (44%), Gaps = 40/254 (15%)

Query: 110 GYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIR 169
            Y   G+LD ++ L +     + + +T+ I  +   G+   +     L LL  M+  G+ 
Sbjct: 332 AYAASGRLDLSLALLRRTRDPTAIFYTSAIHAHSSRGHRLPA-----LALLSDMLAQGLL 386

Query: 170 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGD------- 222
           P A +LS+ L  C  LS    G+ +H   FK  L  D+   T L+ MY + GD       
Sbjct: 387 PTAHTLSASLPACRGLSP---GRALHGYAFKLALAGDSYVATALLGMYARAGDATAARAL 443

Query: 223 -------------------------LEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKA 257
                                    L+DA  LF  +  KD V WNAMI GY QHG+  +A
Sbjct: 444 FDDMLPDPHVVSVTAMLTCYADMGALDDARSLFDGLPTKDFVCWNAMIDGYTQHGRPNEA 503

Query: 258 LRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVD 317
           LRLF +M   G++PD +T V +L A    G V+ G      + N   +       T ++D
Sbjct: 504 LRLFRRMLGSGVEPDEVTVVLVLSAVAQLGTVESGKWLHSYVKNSRRVQLSVRVGTALID 563

Query: 318 LLGRAGKLVEAVDL 331
           +  + G L +AVD+
Sbjct: 564 MYCKCGSLGDAVDV 577


>gi|357521733|ref|XP_003631155.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525177|gb|AET05631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 785

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 205/530 (38%), Positives = 313/530 (59%), Gaps = 18/530 (3%)

Query: 26  AQELFDKIPQPDVVSYNIMLSCILLNSD--DVVAAFD----FFQRLPIKDTASWNTMISG 79
           A+++F+ + + + V ++ M+   +L+    D +A +D     +   P   T +  TM+  
Sbjct: 264 ARKIFNTVNKKNDVCWSAMIGGYVLHDSISDALALYDDMLCIYGLNPTPATLA--TMLRA 321

Query: 80  FVQKKNMAKARDLFLAMPEK----NSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAW 135
             Q  ++ + + L   M +     ++   +++IS Y +CG +D AV        K  V++
Sbjct: 322 CAQLTDLKRGKKLHCHMIKSGMDLDTTVGNSLISMYAKCGIMDNAVGFLDEMIAKDTVSY 381

Query: 136 TAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVH 195
           +A+ISG      V+N +AE  L + R M   GI P   ++ ++L  CSHL++LQ G   H
Sbjct: 382 SAIISGC-----VQNGYAEKALLIFRQMQSSGIAPYLETMIALLPACSHLAALQHGTCCH 436

Query: 196 QLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGE 255
                     DT+    +I MY KCG +  + ++F  +Q +D+++WN MI GY  HG   
Sbjct: 437 GYTVVRGFTNDTSICNAIIDMYSKCGKITISREIFDRMQNRDIISWNTMIIGYGIHGLCV 496

Query: 256 KALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCM 315
           +AL LF +++  G+KPD +T +A+L AC+H+GLV  G  +F SM  ++ I  +  HY CM
Sbjct: 497 EALSLFQELQALGLKPDDVTLIAVLSACSHSGLVTEGKYWFSSMSQNFNIKPRMAHYICM 556

Query: 316 VDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANA 375
           VDLL RAG L EA   I++MPF P   I+G LL+ACR HK +++ E  +  +  L P   
Sbjct: 557 VDLLARAGNLDEAYTFIQRMPFVPNVRIWGALLAACRTHKNIEMGEQVSKKIQLLGP-EG 615

Query: 376 AGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPEL 435
            G +V ++NIY+++ +WDD A IR   + +   K PG SW+E+  V+H F  G + HP+ 
Sbjct: 616 TGNFVLMSNIYSSVGRWDDAAYIRSIQRHHGYKKSPGCSWVEISGVIHVFIGGHQSHPQS 675

Query: 436 VSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTP 495
            SI++KL+EL  +MK  GY  D  F LH V EE KEQ+LL+HSEK+AIAFG++     + 
Sbjct: 676 ASINKKLQELLVQMKKLGYRADSSFVLHDVEEEEKEQILLYHSEKVAIAFGILNTSPSSR 735

Query: 496 IRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           I V KNLR+C DCH A K+I+ + +REI VRD +RFHHFKDG C+C D+W
Sbjct: 736 ILVTKNLRICVDCHSAIKFITLLTEREITVRDASRFHHFKDGICNCQDFW 785



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 99/334 (29%), Positives = 161/334 (48%), Gaps = 34/334 (10%)

Query: 21  GKLKDAQELFDKIPQPD--VVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMIS 78
           G L  AQ LF+ I   D  +V++N M++    ++          Q      T + +T++S
Sbjct: 156 GHLYQAQTLFNSISHQDRDIVAWNAMIAAFSFHALHAQTIHSVAQMQQAGVTPNSSTLVS 215

Query: 79  -----GFVQKKNMAKA------RDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVA 127
                G     +  KA      R+ F      N V  +A++  Y +C  L  A ++F   
Sbjct: 216 ILPTIGQANALHQGKAIHAYYIRNFFF----DNVVLQTALLDMYAKCHLLFYARKIFNTV 271

Query: 128 PVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGL-GIRPNASSLSSVLLGCSHLS 186
             K+ V W+AMI      GYV +    D L L   M+ + G+ P  ++L+++L  C+ L+
Sbjct: 272 NKKNDVCWSAMIG-----GYVLHDSISDALALYDDMLCIYGLNPTPATLATMLRACAQLT 326

Query: 187 SLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMIS 246
            L+ GK++H  + KS +  DTT    LISMY KCG +++A     E+  KD V+++A+IS
Sbjct: 327 DLKRGKKLHCHMIKSGMDLDTTVGNSLISMYAKCGIMDNAVGFLDEMIAKDTVSYSAIIS 386

Query: 247 GYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNH-----AGLVDLGIQYFDSMVN 301
           G  Q+G  EKAL +F +M+  G+ P   T +ALL AC+H      G    G        N
Sbjct: 387 GCVQNGYAEKALLIFRQMQSSGIAPYLETMIALLPACSHLAALQHGTCCHGYTVVRGFTN 446

Query: 302 DYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335
           D  I         ++D+  + GK+  + ++  +M
Sbjct: 447 DTSIC------NAIIDMYSKCGKITISREIFDRM 474



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 92/353 (26%), Positives = 160/353 (45%), Gaps = 25/353 (7%)

Query: 13  LAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTAS 72
           LA +   R +++ A+ +FD+IP+P VV +N+M+     +     + + +   L +  T +
Sbjct: 47  LARYHISRNEIQLARHVFDQIPKPSVVLWNMMIRTYAWSGPFQQSIYLYLHMLQLGVTPT 106

Query: 73  WNTMISGFVQKKNMAKARDL---------FLAMPEKNSVSWSAMISGYIECGQLDKAVEL 123
            N      ++  +  +A  L          L +     VS +A++  Y +CG L +A  L
Sbjct: 107 -NFTFPFLLKACSSLQALQLGRLIHTHAHILGLSMDLYVS-TALLHMYAKCGHLYQAQTL 164

Query: 124 FKVAPV--KSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLG 181
           F       + +VAW AMI+ +  F    ++     +  +  M   G+ PN+S+L S+L  
Sbjct: 165 FNSISHQDRDIVAWNAMIAAF-SF----HALHAQTIHSVAQMQQAGVTPNSSTLVSILPT 219

Query: 182 CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTW 241
               ++L  GK +H    ++    +    T L+ MY KC  L  A K+F  + +K+ V W
Sbjct: 220 IGQANALHQGKAIHAYYIRNFFFDNVVLQTALLDMYAKCHLLFYARKIFNTVNKKNDVCW 279

Query: 242 NAMISGYAQHGKGEKALRLFDKMK-DEGMKPDSITFVALLLACNHAGLVDL--GIQYFDS 298
           +AMI GY  H     AL L+D M    G+ P   T   +L AC  A L DL  G +    
Sbjct: 280 SAMIGGYVLHDSISDALALYDDMLCIYGLNPTPATLATMLRAC--AQLTDLKRGKKLHCH 337

Query: 299 MVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSAC 351
           M+   G+         ++ +  + G +  AV  + +M  K   + +  ++S C
Sbjct: 338 MIKS-GMDLDTTVGNSLISMYAKCGIMDNAVGFLDEMIAKDTVS-YSAIISGC 388



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 33/130 (25%), Positives = 61/130 (46%), Gaps = 1/130 (0%)

Query: 209 ALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEG 268
           A T L   +    +++ A  +F +I +  VV WN MI  YA  G  ++++ L+  M   G
Sbjct: 43  AATQLARYHISRNEIQLARHVFDQIPKPSVVLWNMMIRTYAWSGPFQQSIYLYLHMLQLG 102

Query: 269 MKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEA 328
           + P + TF  LL AC+    + LG +   +  +  G++      T ++ +  + G L +A
Sbjct: 103 VTPTNFTFPFLLKACSSLQALQLG-RLIHTHAHILGLSMDLYVSTALLHMYAKCGHLYQA 161

Query: 329 VDLIKKMPFK 338
             L   +  +
Sbjct: 162 QTLFNSISHQ 171


>gi|224129792|ref|XP_002320672.1| predicted protein [Populus trichocarpa]
 gi|222861445|gb|EEE98987.1| predicted protein [Populus trichocarpa]
          Length = 720

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 227/555 (40%), Positives = 320/555 (57%), Gaps = 30/555 (5%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQP--DVVSYNIM----------LSCILLNSDDVVA 57
           NS+L  ++K  G L++A+ +F+ + +   D VS+N M          L  + L  D V  
Sbjct: 177 NSLLTYYSKN-GILEEAEMVFNGMGEEVRDEVSWNSMIVAYGQHKRGLKALALYRDMVHR 235

Query: 58  AF--DFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECG 115
            F  D F    +  T S    +SG +Q    A           KN    S +I  Y +CG
Sbjct: 236 GFEIDMFTLASVLTTFSCVEDLSGGLQFHAKAIKTGF-----NKNRHVGSGLIDMYAKCG 290

Query: 116 Q-LDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASS 174
             + ++ ++F+      +V W  MISGY +        + + L+  R M   G  P+  S
Sbjct: 291 AGMSESRKVFEEICGSDLVVWNTMISGYSQ----NKELSVEALECFRQMQRAGYWPDDCS 346

Query: 175 LSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALT-PLISMYCKCGDLEDACKLFLEI 233
               +  CS+LSS   GKQ H L  KS +  +  ++   L++MY KCG+L+DA KLF  +
Sbjct: 347 FVCAISACSNLSSPSQGKQFHALAMKSEIPSNQISVNNALVTMYSKCGNLQDARKLFQRM 406

Query: 234 QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGI 293
            + + VT N++I+GYAQHG G ++L LF++M    + P SIT V++L AC H G V+ G 
Sbjct: 407 PQHNTVTLNSIIAGYAQHGIGTESLNLFEQMLAASIAPTSITLVSILSACAHTGRVEEGK 466

Query: 294 QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRV 353
           +YF+ M + +GI  + +HY+CM+DLLGRAGKL EA  LI  MPF P  A +  LL ACR 
Sbjct: 467 KYFNMMKDIFGIEPEAEHYSCMIDLLGRAGKLSEAERLIDTMPFSPGSAAWAALLGACRK 526

Query: 354 HKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGY 413
           +  ++LAE AA     L P NA   Y+ LA++Y+A +KW++ ARIR  M++  + K PG 
Sbjct: 527 YGNMELAEKAANQFLQLEPTNAVP-YIMLASMYSAARKWEEAARIRKLMRDRGIRKKPGC 585

Query: 414 SWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFAL---HAVGEEVK 470
           SWIE+   VH F + D  HP +  IH  L E+  +MK AGYVPD+ +A       GE+ K
Sbjct: 586 SWIELNKRVHVFVAEDNSHPRIKEIHMYLDEMFVKMKRAGYVPDVRWAFVKDDETGEQEK 645

Query: 471 EQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTR 530
           E +L  HSEKLA+AFGL+    G P+ V KNLR+CGDCH A K++SAI +R+I VRD  R
Sbjct: 646 EIMLAHHSEKLAVAFGLLFTKHGEPLLVVKNLRICGDCHNAIKFMSAIARRKITVRDAYR 705

Query: 531 FHHFKDGTCSCGDYW 545
           FH F+DG CSCGDYW
Sbjct: 706 FHCFEDGRCSCGDYW 720



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 47/82 (57%), Gaps = 1/82 (1%)

Query: 209 ALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEG 268
           +   LI+ Y K   +  A  LF +I + D+V++N +I+ YA  G    AL LF +M++ G
Sbjct: 76  SFNALIAAYAKESLIHVAHHLFDQIPQPDLVSFNTLINAYADRGDTLSALSLFGEMREMG 135

Query: 269 MKPDSITFVALLLA-CNHAGLV 289
           +  D  TF  ++ A CNH GL+
Sbjct: 136 LVMDGFTFSGVITACCNHVGLI 157



 Score = 43.9 bits (102), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 68/154 (44%), Gaps = 13/154 (8%)

Query: 7   VNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP 66
           ++ N+ L     + G L+DA++LF ++PQ + V+ N +++    +     +   F Q L 
Sbjct: 380 ISVNNALVTMYSKCGNLQDARKLFQRMPQHNTVTLNSIIAGYAQHGIGTESLNLFEQMLA 439

Query: 67  IKDTASWNTMIS--------GFVQ--KKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQ 116
                +  T++S        G V+  KK     +D+F   PE     +S MI      G+
Sbjct: 440 ASIAPTSITLVSILSACAHTGRVEEGKKYFNMMKDIFGIEPEAE--HYSCMIDLLGRAGK 497

Query: 117 LDKAVELFKVAPVK-SVVAWTAMISGYMKFGYVE 149
           L +A  L    P      AW A++    K+G +E
Sbjct: 498 LSEAERLIDTMPFSPGSAAWAALLGACRKYGNME 531


>gi|414586388|tpg|DAA36959.1| TPA: hypothetical protein ZEAMMB73_269943 [Zea mays]
          Length = 643

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 211/532 (39%), Positives = 315/532 (59%), Gaps = 17/532 (3%)

Query: 23  LKDAQELFDKIPQPDVVSYN-IMLSCILLNSDDVVAAFDFFQRLPIK----DTASWNTMI 77
            +  +++FD++ + DVVS+N ++L C          A  F +++  +    D+ + +T++
Sbjct: 120 FESVRKVFDEMIERDVVSWNTLVLGCAEEGRHH--EALGFVRKMCREGFRPDSFTLSTVL 177

Query: 78  SGFVQKKNMAKARDL----FLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVV 133
             F +  ++ +  ++    F    + +    S++I  Y  C + D +V++F   PV+  +
Sbjct: 178 PIFAECADVKRGLEVHGFAFRNGFDSDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDHI 237

Query: 134 AWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ 193
            W ++++G  + G VE     + L + R M+  G+RP   + SS++  C +L+SL+ GKQ
Sbjct: 238 LWNSLLAGCAQNGSVE-----EALGIFRRMLQAGVRPVPVTFSSLIPVCGNLASLRFGKQ 292

Query: 194 VHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGK 253
           +H  V       +    + LI MYCKCG++  A  +F ++   DVV+W AMI GYA HG 
Sbjct: 293 LHAYVICGGFEDNVFISSSLIDMYCKCGEISIAHCIFDKMSSPDVVSWTAMIMGYALHGP 352

Query: 254 GEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYT 313
             +AL LF++M+    KP+ ITF+A+L AC+HAGLVD G +YF SM N YGI    +H+ 
Sbjct: 353 AREALVLFERMELGNAKPNHITFLAVLTACSHAGLVDKGWKYFKSMSNHYGIVPTLEHFA 412

Query: 314 CMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPA 373
            + D LGRAG+L EA + I KM  KP  +++ TLL ACRVHK   LAE  A  +  L P 
Sbjct: 413 ALADTLGRAGELDEAYNFISKMQIKPTASVWSTLLRACRVHKNTMLAEEVAKKIMELEP- 471

Query: 374 NAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHP 433
            + G +V L+N+Y+A  +W++ A +R SM++  + K P  SWIEV + +H F + DR HP
Sbjct: 472 RSIGSHVVLSNMYSASGRWNEAAHLRESMRKKGMKKDPACSWIEVKSKLHVFVAHDRSHP 531

Query: 434 ELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLG 493
               I + L    ++M   G+VP+ E     + EE K  +L  HSEKLAI FG+I  P G
Sbjct: 532 WYDRIIDALNAFSEQMAREGHVPNTEDVFQDIEEEHKSYVLCGHSEKLAIVFGIISTPAG 591

Query: 494 TPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           T IRV KNLRVC DCH  TK+IS +  REI+VRD  RFHHFKDG CSCGD+W
Sbjct: 592 TKIRVMKNLRVCIDCHTVTKFISKLADREIVVRDANRFHHFKDGNCSCGDFW 643



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 62/246 (25%), Positives = 99/246 (40%), Gaps = 53/246 (21%)

Query: 159 LLRMMIGLGIRPNA-SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMY 217
            LRM      R +  +SL + L  C+ L    LG  +H L  +S    D      L+++Y
Sbjct: 36  FLRMRASAAPRSSVPASLPAALKSCAALGLSALGASLHALAIRSGAFADRFTANALLNLY 95

Query: 218 CK--CGDL-----------------EDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKAL 258
           CK  C  L                 E   K+F E+  +DVV+WN ++ G A+ G+  +AL
Sbjct: 96  CKVPCSYLDSTGVAIVDVPGSSTAFESVRKVFDEMIERDVVSWNTLVLGCAEEGRHHEAL 155

Query: 259 RLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQY--------FD-------SMVNDY 303
               KM  EG +PDS T   +L        V  G++         FD       S+++ Y
Sbjct: 156 GFVRKMCREGFRPDSFTLSTVLPIFAECADVKRGLEVHGFAFRNGFDSDVFVGSSLIDMY 215

Query: 304 GIAAKPDHYTCMVDLL---------------GRAGKLVEAVDLIKKM---PFKPQPAIFG 345
               + D+   + D L                + G + EA+ + ++M     +P P  F 
Sbjct: 216 ANCTRTDYSVKVFDNLPVRDHILWNSLLAGCAQNGSVEEALGIFRRMLQAGVRPVPVTFS 275

Query: 346 TLLSAC 351
           +L+  C
Sbjct: 276 SLIPVC 281



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 65/276 (23%), Positives = 113/276 (40%), Gaps = 34/276 (12%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           + V+  + WNS+LAG A Q G +++A  +F ++ Q  V    +  S ++    + +A+  
Sbjct: 231 LPVRDHILWNSLLAGCA-QNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPVCGN-LASLR 288

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
           F ++L          +  GF                 E N    S++I  Y +CG++  A
Sbjct: 289 FGKQLHAY------VICGGF-----------------EDNVFISSSLIDMYCKCGEISIA 325

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLL 180
             +F       VV+WTAMI GY   G      A + L L   M     +PN  +  +VL 
Sbjct: 326 HCIFDKMSSPDVVSWTAMIMGYALHGP-----AREALVLFERMELGNAKPNHITFLAVLT 380

Query: 181 GCSHLSSLQLG-KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVV 239
            CSH   +  G K    +     +         L     + G+L++A     ++Q K   
Sbjct: 381 ACSHAGLVDKGWKYFKSMSNHYGIVPTLEHFAALADTLGRAGELDEAYNFISKMQIKPTA 440

Query: 240 T-WNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSI 274
           + W+ ++     H     A  +  K+ +  ++P SI
Sbjct: 441 SVWSTLLRACRVHKNTMLAEEVAKKIME--LEPRSI 474


>gi|413944960|gb|AFW77609.1| hypothetical protein ZEAMMB73_798524 [Zea mays]
          Length = 665

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 219/557 (39%), Positives = 315/557 (56%), Gaps = 27/557 (4%)

Query: 5   TTVNWNSVLAGFAKQRGKLKDAQELF-----DKIPQPDVVSYNIMLSCILLNSDDV--VA 57
             + WN +++G  +  G+ +DA         + + +PD       +SC L    DV  V+
Sbjct: 120 NVITWNGLVSGLNRS-GRARDAVVALATMHGEGLLRPDATG----VSCALSAVGDVGLVS 174

Query: 58  AFDFFQRLPIK-----DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYI 112
                    +K     D      +I  + +    A+   +F      +  S +A+I+G  
Sbjct: 175 VGQQLHGYAVKAGCRADACVVTALIDMYGKCGQAAEVVRVFDESSHMDVASCNALIAGLS 234

Query: 113 ECGQLDKAVELFKVAPVK----SVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGI 168
              Q+ +A+ LFK    +    +VV+WT++++       V+N    + ++  R M   G 
Sbjct: 235 RNAQVCEALRLFKEFVDRGVELNVVSWTSIVACC-----VQNGKDLEAVEFFREMQAQGT 289

Query: 169 RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK 228
            PN+ ++  VL   +++++L  G+  H    +     D    + L+ MY KCG ++DA  
Sbjct: 290 EPNSVTIPCVLPAFANVAALMHGRSAHCFALRKGFLHDVYVSSALVDMYAKCGRVKDARI 349

Query: 229 LFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGL 288
           +F  +  ++VV+WNAMI GYA +G+   A+ +F  M     KPD +TF  LL AC  AGL
Sbjct: 350 IFDTMVSRNVVSWNAMIGGYAMYGEAVNAVWMFHSMLKCKQKPDMVTFTCLLAACTQAGL 409

Query: 289 VDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLL 348
            + G  YF  M N+YG++ + +HY CMV LLGRAGKL EA DLI  MPF+P   I+G+LL
Sbjct: 410 TEEGRHYFKEMHNEYGVSPRMEHYACMVTLLGRAGKLDEAYDLISDMPFEPDAYIWGSLL 469

Query: 349 SACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVV 408
            +CRVH  +DLAE AA  LF+L P NA G YV L+NIYA+ K WD V R+R  MK+  + 
Sbjct: 470 GSCRVHGNVDLAEVAAEKLFHLEPENA-GNYVLLSNIYASKKMWDRVNRVREMMKDVGLK 528

Query: 409 KMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEE 468
           K  G SWIE+   VH   +GD  HP + +I EK+ +L  +M+  G+VP  +F LH V E+
Sbjct: 529 KEKGCSWIEIKNKVHMLLAGDDSHPMMTAIIEKINQLNIQMRKLGFVPSTDFVLHDVEEQ 588

Query: 469 VKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDT 528
            K+ +L  HSEKLA+A GLI    GT +RV KNLR+CGDCH A K+IS+ E REI VRDT
Sbjct: 589 EKDDILAVHSEKLAVALGLISTSPGTTLRVIKNLRICGDCHEAMKFISSFEGREISVRDT 648

Query: 529 TRFHHFKDGTCSCGDYW 545
            RFHHF  G CSCGD+W
Sbjct: 649 NRFHHFSGGKCSCGDFW 665



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 64/242 (26%), Positives = 121/242 (50%), Gaps = 17/242 (7%)

Query: 68  KDTASWNTMISGFVQKKNMAKARDLFLAMP--EKNSVSWSAMISGYIECGQLDKAVELFK 125
           +D    ++++  +++      AR LF  MP  ++  V WSA+++ +   G  + A  L +
Sbjct: 50  RDPFVASSLLHAYLRLGTTGNARALFDGMPRPQRTVVGWSALVAAHAARGDAEGAWRLLE 109

Query: 126 -------VAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLG-IRPNASSLSS 177
                  V P  +V+ W  ++SG  + G      A D +  L  M G G +RP+A+ +S 
Sbjct: 110 EMRRDGGVEP--NVITWNGLVSGLNRSGR-----ARDAVVALATMHGEGLLRPDATGVSC 162

Query: 178 VLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKD 237
            L     +  + +G+Q+H    K+    D   +T LI MY KCG   +  ++F E    D
Sbjct: 163 ALSAVGDVGLVSVGQQLHGYAVKAGCRADACVVTALIDMYGKCGQAAEVVRVFDESSHMD 222

Query: 238 VVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFD 297
           V + NA+I+G +++ +  +ALRLF +  D G++ + +++ +++  C   G     +++F 
Sbjct: 223 VASCNALIAGLSRNAQVCEALRLFKEFVDRGVELNVVSWTSIVACCVQNGKDLEAVEFFR 282

Query: 298 SM 299
            M
Sbjct: 283 EM 284



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/131 (28%), Positives = 61/131 (46%), Gaps = 7/131 (5%)

Query: 205 KDTTALTPLISMYCKCGDLEDACKLFLEIQRK-----DVVTWNAMISGYAQHGKGEKALR 259
           +     + L++ +   GD E A +L  E++R      +V+TWN ++SG  + G+   A+ 
Sbjct: 83  RTVVGWSALVAAHAARGDAEGAWRLLEEMRRDGGVEPNVITWNGLVSGLNRSGRARDAVV 142

Query: 260 LFDKMKDEG-MKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDL 318
               M  EG ++PD+      L A    GLV +G Q     V   G  A     T ++D+
Sbjct: 143 ALATMHGEGLLRPDATGVSCALSAVGDVGLVSVGQQLHGYAVK-AGCRADACVVTALIDM 201

Query: 319 LGRAGKLVEAV 329
            G+ G+  E V
Sbjct: 202 YGKCGQAAEVV 212


>gi|147854977|emb|CAN80267.1| hypothetical protein VITISV_027683 [Vitis vinifera]
          Length = 539

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 207/475 (43%), Positives = 293/475 (61%), Gaps = 9/475 (1%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVV 133
           N MI  +     + +AR +F    +++  SW+ MI GY+  G++ +A E+F     + VV
Sbjct: 71  NAMIRMYANWGLVDEARRVFDWSLDQDLYSWNIMIGGYVGSGEIGRAKEMFDEMSERDVV 130

Query: 134 AWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ 193
           +WT +I+GY++ G  +     + L L   M+  G  PN  +L+S L  C++L +L  G+ 
Sbjct: 131 SWTTIIAGYVQVGCFK-----EALDLFHEMLQTGPPPNEFTLASALAACANLVALDQGRW 185

Query: 194 VHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ--RKDVVTWNAMISGYAQH 251
           +H  + KS +  +   L  L+ MY KCG+++ A K+F +    +  V  WNAMI GYA H
Sbjct: 186 IHVYIDKSEIKMNERLLASLLDMYAKCGEIDFAAKVFHDEYGLKLKVWPWNAMIGGYAMH 245

Query: 252 GKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDH 311
           GK ++A+ LF++MK E + P+ +TFVALL AC+H  LV+ G  YF SM + YGI  + +H
Sbjct: 246 GKSKEAIDLFEQMKVEKVSPNKVTFVALLNACSHGKLVEEGRGYFKSMASSYGIEPEIEH 305

Query: 312 YTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLN 371
           Y CMVDLLGR+G L EA + +  MP  P   I+G LL ACR+HK ++  +     +  L+
Sbjct: 306 YGCMVDLLGRSGLLKEAEETVFNMPMAPDATIWGALLGACRIHKDIERGQRIGKIIKELD 365

Query: 372 PANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRV 431
            ++  GC+V LAN+Y+A  +WD+   +R  ++ +   K PG S IE+  V H+F  GDR 
Sbjct: 366 -SDHIGCHVLLANLYSASGQWDEAKAVRQKIEVSGRKKTPGCSSIELNGVFHQFLVGDRS 424

Query: 432 HPELVSIHEKLKELEKRMKLAGYVPDL-EFALHAVGEEVKEQLLLFHSEKLAIAFGLIKV 490
           HP+   ++  L E+  ++K AGYVP+  E  L    EE KE  L  HSEKLAIAFGLI  
Sbjct: 425 HPQTKQLYLFLDEMTTKLKNAGYVPEFGEVLLDIDDEEDKETALSKHSEKLAIAFGLINT 484

Query: 491 PLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           P GT IR+ KNLRVC DCH ATK+IS + KREIIVRD  R+HHFKDG CSC DYW
Sbjct: 485 PPGTAIRIVKNLRVCADCHEATKFISKVYKREIIVRDRIRYHHFKDGFCSCKDYW 539



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 68/295 (23%), Positives = 116/295 (39%), Gaps = 61/295 (20%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G + +A+ +FD     D+ S+NIM+    + S ++  A + F  +  +D  SW T+I+G+
Sbjct: 81  GLVDEARRVFDWSLDQDLYSWNIMIGG-YVGSGEIGRAKEMFDEMSERDVVSWTTIIAGY 139

Query: 81  VQKKNMAKARDLFLAM----PEKNSVS------------------W-------------- 104
           VQ     +A DLF  M    P  N  +                  W              
Sbjct: 140 VQVGCFKEALDLFHEMLQTGPPPNEFTLASALAACANLVALDQGRWIHVYIDKSEIKMNE 199

Query: 105 ---SAMISGYIECGQLDKAVELF--KVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKL 159
              ++++  Y +CG++D A ++F  +      V  W AMI GY   G      +++ + L
Sbjct: 200 RLLASLLDMYAKCGEIDFAAKVFHDEYGLKLKVWPWNAMIGGYAMHGK-----SKEAIDL 254

Query: 160 LRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCK 219
              M    + PN  +  ++L  CSH   ++ G+      FKS     +  + P I  Y  
Sbjct: 255 FEQMKVEKVSPNKVTFVALLNACSHGKLVEEGRG----YFKS--MASSYGIEPEIEHYGC 308

Query: 220 CGDLEDACKLFLEIQRK--------DVVTWNAMISGYAQHGKGEKALRLFDKMKD 266
             DL     L  E +          D   W A++     H   E+  R+   +K+
Sbjct: 309 MVDLLGRSGLLKEAEETVFNMPMAPDATIWGALLGACRIHKDIERGQRIGKIIKE 363


>gi|357125908|ref|XP_003564631.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Brachypodium distachyon]
          Length = 647

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 216/575 (37%), Positives = 318/575 (55%), Gaps = 47/575 (8%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
           N++L  +A   G L  A+ LF+ I + +V+S+NI++   + N D + +A + F ++P ++
Sbjct: 81  NNLLLAYADL-GDLPTARHLFEGISKRNVMSWNILIGGCIKNGD-LGSARELFDKMPTRN 138

Query: 70  TASWNTMISGFVQKKNMAKARDLFLAMPEKN----------------------------- 100
            A+WN M++G         +   FLAM  +                              
Sbjct: 139 VATWNAMVAGLTNVGLDEDSLQFFLAMRREGMHPDEFGLGSVFRCCAGLLDVVSGRQVHA 198

Query: 101 SVSWSAMISG----------YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVEN 150
            V  S M S           Y+ CG L +   + +  P  ++V++   I+G       +N
Sbjct: 199 YVVRSGMDSDMCVGNSLAHMYMRCGCLAEGEAVLRALPSLTIVSFNTTIAGR-----TQN 253

Query: 151 SWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTAL 210
             +E  L+   MM G+ + P+  +  S +  CS L++L  G+QVH  V K+ + K    +
Sbjct: 254 GDSEGALEYFSMMRGVEVAPDVVTFVSAISCCSDLAALAQGQQVHAQVIKAGVDKVVPVI 313

Query: 211 TPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMK 270
           T L+ MY +CG L D+ +++      D+   +AMIS    HG+G KA+ LF +M + G +
Sbjct: 314 TSLVHMYSRCGCLGDSERVYDGYCGLDLFLLSAMISACGFHGQGHKAVELFKQMMNGGAE 373

Query: 271 PDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVD 330
           P+ +TF+ALL AC+H+GL D G+++F+ M   YG      HY C+VDLLGR+G L EA  
Sbjct: 374 PNEVTFLALLYACSHSGLKDEGLEFFELMTKTYGFQPSVKHYNCIVDLLGRSGCLDEAEA 433

Query: 331 LIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMK 390
           LI  MP +    I+ TLLSAC+  K  D+AE  A  +   +P ++A  YV L+NI A  K
Sbjct: 434 LILSMPVRADGVIWKTLLSACKTQKNFDMAERIAERVIESDPRDSAP-YVLLSNIRATSK 492

Query: 391 KWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMK 450
           +W DV  +R  M+E ++ K PG SW+E    VH+F +GD+ HP    I E LKE+  +++
Sbjct: 493 RWGDVTEVRKIMREKDIRKEPGVSWVEHKGQVHQFCTGDKSHPRQGEIDEYLKEMMGKIR 552

Query: 451 LAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHR 510
             GY PD+    H + +E KE  L  HSEKLAIAF  + +P G PIRV KNLRVC DCH 
Sbjct: 553 QCGYAPDMTMVFHDMEDEEKEVSLTHHSEKLAIAFAFLNLPEGVPIRVMKNLRVCDDCHV 612

Query: 511 ATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           A K IS +  REI+VRD +RFHHF+DG CSCGDYW
Sbjct: 613 AIKLISQVTGREIVVRDVSRFHHFRDGRCSCGDYW 647



 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 89/316 (28%), Positives = 142/316 (44%), Gaps = 38/316 (12%)

Query: 69  DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAP 128
           D  + N ++  +    ++  AR LF  + ++N +SW+ +I G I+ G L  A ELF   P
Sbjct: 76  DRFTTNNLLLAYADLGDLPTARHLFEGISKRNVMSWNILIGGCIKNGDLGSARELFDKMP 135

Query: 129 VKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSL 188
            ++V  W AM++G    G       ED L+    M   G+ P+   L SV   C+ L  +
Sbjct: 136 TRNVATWNAMVAGLTNVGL-----DEDSLQFFLAMRREGMHPDEFGLGSVFRCCAGLLDV 190

Query: 189 QLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGY 248
             G+QVH  V +S +  D      L  MY +CG L +   +   +    +V++N  I+G 
Sbjct: 191 VSGRQVHAYVVRSGMDSDMCVGNSLAHMYMRCGCLAEGEAVLRALPSLTIVSFNTTIAGR 250

Query: 249 AQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN-----------HAGLVDLGIQ--- 294
            Q+G  E AL  F  M+   + PD +TFV+ +  C+           HA ++  G+    
Sbjct: 251 TQNGDSEGALEYFSMMRGVEVAPDVVTFVSAISCCSDLAALAQGQQVHAQVIKAGVDKVV 310

Query: 295 -YFDSMVNDY------GIAAKPDHYTCMVDLL---------GRAGKLVEAVDLIKKM--- 335
               S+V+ Y      G + +     C +DL          G  G+  +AV+L K+M   
Sbjct: 311 PVITSLVHMYSRCGCLGDSERVYDGYCGLDLFLLSAMISACGFHGQGHKAVELFKQMMNG 370

Query: 336 PFKPQPAIFGTLLSAC 351
             +P    F  LL AC
Sbjct: 371 GAEPNEVTFLALLYAC 386



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 65/142 (45%), Gaps = 10/142 (7%)

Query: 171 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 230
           +AS  S +   C    ++ L +Q+H     S    D      L+  Y   GDL  A  LF
Sbjct: 44  DASLFSHIFRACR---AIPLLRQLHAFAATSGAAADRFTTNNLLLAYADLGDLPTARHLF 100

Query: 231 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVD 290
             I +++V++WN +I G  ++G    A  LFDKM    +     T+ A++    + GL +
Sbjct: 101 EGISKRNVMSWNILIGGCIKNGDLGSARELFDKMPTRNVA----TWNAMVAGLTNVGLDE 156

Query: 291 LGIQYFDSMVNDYGIAAKPDHY 312
             +Q+F +M  +      PD +
Sbjct: 157 DSLQFFLAMRRE---GMHPDEF 175


>gi|395146511|gb|AFN53666.1| hypothetical protein [Linum usitatissimum]
          Length = 850

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 220/554 (39%), Positives = 316/554 (57%), Gaps = 17/554 (3%)

Query: 2   NVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIP----QPDVVSY-NIMLSCI-LLNSDDV 55
           N K  V+WNS++ GF  Q G    A +LF+++      P+ V+  ++M +C   +N    
Sbjct: 304 NNKDIVSWNSMVTGFV-QGGYPDKALDLFERMRNEGVHPNAVTMVSVMSACAKTMNLTLG 362

Query: 56  VAAFDFFQRLPIK-DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIEC 114
               D+  R  +  +    N  I  FV+   +  AR LF  M +++ VSW+ +I GY + 
Sbjct: 363 RKVCDYIDRNEMMMNLNVCNATIDMFVKCGEVEIARGLFDNMEKRDVVSWTTIIDGYAKM 422

Query: 115 GQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLR--MMIGLGIRPNA 172
            +   A ++F   P K + AW  +ISGY + G       ++ L + R   +   G RP+ 
Sbjct: 423 SEHGIARDIFDSMPRKDIPAWNVLISGYEQSGR-----PKEALAIFRELQLTKSGARPDQ 477

Query: 173 SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLE 232
            +L S L  C+ L ++ +G+ +H  + K  +  +    T LI MY K GD+E A ++F  
Sbjct: 478 VTLLSTLSACAQLGAMDIGEWIHGYIKKERIQLNRNLATSLIDMYSKSGDVEKAIEVFHS 537

Query: 233 IQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 292
           I  KDV  W+AMI+G A HG+GE A+ LF  M++  +KP+S+TF  LL AC+H+GLVD G
Sbjct: 538 IGNKDVFVWSAMIAGLAMHGRGEAAIELFLDMQETQVKPNSVTFTNLLCACSHSGLVDEG 597

Query: 293 IQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACR 352
            + FD M   YG+  K  HY+CMVD+LGRAG L EA+  I+ MP  P  +++G LL AC 
Sbjct: 598 KRLFDEMERVYGVVPKTKHYSCMVDVLGRAGHLEEALKFIEGMPLAPSASVWGALLGACC 657

Query: 353 VHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPG 412
           +H  L+LAE A   L  + P N  G YV L+N+YA    W+ V+ +R  M+++ + K  G
Sbjct: 658 IHGNLELAEKACSRLLEIEPGN-HGAYVLLSNLYAKTGDWEGVSELRQQMRDSGLKKETG 716

Query: 413 YSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAV-GEEVKE 471
            S IE+   VHEF  GD  HP    I+ KL E+  R++  GYV +    L  V  EE+KE
Sbjct: 717 CSSIEIDGTVHEFIVGDNAHPLSRDIYAKLDEIMARLRSHGYVANTLCMLQFVEEEEMKE 776

Query: 472 QLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRF 531
           + L  HSEK+AIAFGLI+      IR+ KNLRVC DCH   K +S +  R+I++RD  RF
Sbjct: 777 KALKLHSEKMAIAFGLIRADSQQAIRIVKNLRVCRDCHTVAKMVSKVYGRDIVLRDRYRF 836

Query: 532 HHFKDGTCSCGDYW 545
           HHF  G CSC DYW
Sbjct: 837 HHFSGGHCSCQDYW 850



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 97/391 (24%), Positives = 189/391 (48%), Gaps = 58/391 (14%)

Query: 23  LKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQ 82
           L  A+++FD+IPQP++ S+NI++  +  +SD + +   F + L   D+       +  V 
Sbjct: 189 LDYARKVFDQIPQPNLYSWNILIRALATSSDPIQSVLVFIRML--HDSPFGPNKFTFPVL 246

Query: 83  KKNMAKARDLFL-----AMPEKNSVS-----WSAMISGYIECGQLDKAVELFKV--APVK 130
            K +A+ R   +      M  K S        +++I  Y  CG LD A  +F++     K
Sbjct: 247 IKAVAERRCFLVGKAVHGMAIKTSFGDDVFVLNSLIHFYASCGHLDLAYLVFEMIEGNNK 306

Query: 131 SVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQL 190
            +V+W +M++G+++ GY      +  L L   M   G+ PNA ++ SV+  C+   +L L
Sbjct: 307 DIVSWNSMVTGFVQGGY-----PDKALDLFERMRNEGVHPNAVTMVSVMSACAKTMNLTL 361

Query: 191 GKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVT---------- 240
           G++V   + ++ +  +       I M+ KCG++E A  LF  ++++DVV+          
Sbjct: 362 GRKVCDYIDRNEMMMNLNVCNATIDMFVKCGEVEIARGLFDNMEKRDVVSWTTIIDGYAK 421

Query: 241 ---------------------WNAMISGYAQHGKGEKALRLFDKMK--DEGMKPDSITFV 277
                                WN +ISGY Q G+ ++AL +F +++    G +PD +T +
Sbjct: 422 MSEHGIARDIFDSMPRKDIPAWNVLISGYEQSGRPKEALAIFRELQLTKSGARPDQVTLL 481

Query: 278 ALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPF 337
           + L AC   G +D+G ++    +    I    +  T ++D+  ++G + +A+++   +  
Sbjct: 482 STLSACAQLGAMDIG-EWIHGYIKKERIQLNRNLATSLIDMYSKSGDVEKAIEVFHSIGN 540

Query: 338 KPQPAIFGTLLSACRVHKRLDLAEFAAMNLF 368
           K    ++  +++   +H R +    AA+ LF
Sbjct: 541 K-DVFVWSAMIAGLAMHGRGE----AAIELF 566


>gi|356540339|ref|XP_003538647.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g22690-like [Glycine max]
          Length = 836

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 219/558 (39%), Positives = 314/558 (56%), Gaps = 34/558 (6%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLN---SDDVVAAFDFFQRLPIKDTASWNTMI 77
           G +  A+++FD+    ++V YN ++S  + +   SD +V   +  Q+ P  D  +  + I
Sbjct: 280 GDICAARQIFDECANKNLVMYNTIMSNYVHHEWASDVLVILDEMLQKGPRPDKVTMLSTI 339

Query: 78  SGFVQKKNMAKARDLFLAMPEKNSVSW----SAMISGYIECGQLDKAVELFKVAPVKSVV 133
           +   Q  +++  +     +       W    +A+I  Y++CG+ + A ++F+  P K+VV
Sbjct: 340 AACAQLGDLSVGKSSHAYVLRNGLEGWDNISNAIIDMYMKCGKREAACKVFEHMPNKTVV 399

Query: 134 AWTAMISGYMKFGYVENSWA--------------------------EDGLKLLRMMIGLG 167
            W ++I+G ++ G +E +W                           E+ ++L R M   G
Sbjct: 400 TWNSLIAGLVRDGDMELAWRIFDEMLERDLVSWNTMIGALVQVSMFEEAIELFREMQNQG 459

Query: 168 IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC 227
           I  +  ++  +   C +L +L L K V   + K+ +  D    T L+ M+ +CGD   A 
Sbjct: 460 IPGDRVTMVGIASACGYLGALDLAKWVCTYIEKNDIHVDLQLGTALVDMFSRCGDPSSAM 519

Query: 228 KLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG 287
            +F  ++++DV  W A I   A  G  E A+ LF++M ++ +KPD + FVALL AC+H G
Sbjct: 520 HVFKRMEKRDVSAWTAAIGVMAMEGNTEGAIELFNEMLEQKVKPDDVVFVALLTACSHGG 579

Query: 288 LVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTL 347
            VD G Q F SM   +GI     HY CMVDLLGRAG L EAVDLI+ MP +P   ++G+L
Sbjct: 580 SVDQGRQLFWSMEKAHGIRPHIVHYGCMVDLLGRAGLLEEAVDLIQSMPIEPNDVVWGSL 639

Query: 348 LSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNV 407
           L+ACR HK ++LA +AA  L  L P    G +V L+NIYA+  KW DVAR+RL MKE  V
Sbjct: 640 LAACRKHKNVELAHYAAEKLTQLAPERV-GIHVLLSNIYASAGKWTDVARVRLQMKEKGV 698

Query: 408 VKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGE 467
            K+PG S IEV  ++HEF SGD  H E   I   L+E+  R+  AGYVPD    L  V E
Sbjct: 699 QKVPGSSSIEVQGLIHEFTSGDESHAENTHIGLMLEEINCRLSEAGYVPDTTNVLLDVDE 758

Query: 468 EVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRD 527
           + KE LL  HSEKLA+A+GLI    G PIRV KNLR+C DCH   K +S +  REI VRD
Sbjct: 759 QEKEHLLSRHSEKLAMAYGLITTGQGIPIRVVKNLRMCSDCHSFAKLVSKLYNREITVRD 818

Query: 528 TTRFHHFKDGTCSCGDYW 545
             R+H FK+G CSC DYW
Sbjct: 819 NNRYHFFKEGFCSCRDYW 836



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 96/376 (25%), Positives = 168/376 (44%), Gaps = 50/376 (13%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M ++  +  ++ L  F  + GK+   ++LFD + + +VVS+  +++          A   
Sbjct: 159 MGLEGDIFVSNSLIHFYAECGKVDLGRKLFDGMLERNVVSWTSLINGYSGRDLSKEAVSL 218

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP----------EKNSVSWSAMISG 110
           FFQ        +  TM+         AK +DL L             E +++  +A++  
Sbjct: 219 FFQMGEAGVEPNPVTMVCVI---SACAKLKDLELGKKVCSYISELGMELSTIMVNALVDM 275

Query: 111 YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRP 170
           Y++CG +  A ++F     K++V +  ++S      YV + WA D L +L  M+  G RP
Sbjct: 276 YMKCGDICAARQIFDECANKNLVMYNTIMS-----NYVHHEWASDVLVILDEMLQKGPRP 330

Query: 171 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 230
           +  ++ S +  C+ L  L +GK  H  V ++ L         +I MY KCG  E ACK+F
Sbjct: 331 DKVTMLSTIAACAQLGDLSVGKSSHAYVLRNGLEGWDNISNAIIDMYMKCGKREAACKVF 390

Query: 231 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFD---------------------------- 262
             +  K VVTWN++I+G  + G  E A R+FD                            
Sbjct: 391 EHMPNKTVVTWNSLIAGLVRDGDMELAWRIFDEMLERDLVSWNTMIGALVQVSMFEEAIE 450

Query: 263 ---KMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLL 319
              +M+++G+  D +T V +  AC + G +DL  ++  + +    I       T +VD+ 
Sbjct: 451 LFREMQNQGIPGDRVTMVGIASACGYLGALDLA-KWVCTYIEKNDIHVDLQLGTALVDMF 509

Query: 320 GRAGKLVEAVDLIKKM 335
            R G    A+ + K+M
Sbjct: 510 SRCGDPSSAMHVFKRM 525



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 64/234 (27%), Positives = 121/234 (51%), Gaps = 6/234 (2%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI 164
           +++I  Y ECG++D   +LF     ++VV+WT++I+GY          +++ + L   M 
Sbjct: 169 NSLIHFYAECGKVDLGRKLFDGMLERNVVSWTSLINGYSG-----RDLSKEAVSLFFQMG 223

Query: 165 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 224
             G+ PN  ++  V+  C+ L  L+LGK+V   + +  +   T  +  L+ MY KCGD+ 
Sbjct: 224 EAGVEPNPVTMVCVISACAKLKDLELGKKVCSYISELGMELSTIMVNALVDMYMKCGDIC 283

Query: 225 DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 284
            A ++F E   K++V +N ++S Y  H      L + D+M  +G +PD +T ++ + AC 
Sbjct: 284 AARQIFDECANKNLVMYNTIMSNYVHHEWASDVLVILDEMLQKGPRPDKVTMLSTIAACA 343

Query: 285 HAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 338
             G + +G      ++ + G+    +    ++D+  + GK   A  + + MP K
Sbjct: 344 QLGDLSVGKSSHAYVLRN-GLEGWDNISNAIIDMYMKCGKREAACKVFEHMPNK 396



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 54/204 (26%), Positives = 102/204 (50%), Gaps = 2/204 (0%)

Query: 146 GYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCK 205
           GY      +  + L   M+ +GI P+  +   +L  CS + +L  G QVH  V K  L  
Sbjct: 104 GYASAGLGDQAILLYVQMLVMGIVPDKYTFPFLLSACSKILALSEGVQVHGAVLKMGLEG 163

Query: 206 DTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMK 265
           D      LI  Y +CG ++   KLF  +  ++VV+W ++I+GY+     ++A+ LF +M 
Sbjct: 164 DIFVSNSLIHFYAECGKVDLGRKLFDGMLERNVVSWTSLINGYSGRDLSKEAVSLFFQMG 223

Query: 266 DEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKL 325
           + G++P+ +T V ++ AC     ++LG +   S +++ G+         +VD+  + G +
Sbjct: 224 EAGVEPNPVTMVCVISACAKLKDLELG-KKVCSYISELGMELSTIMVNALVDMYMKCGDI 282

Query: 326 VEAVDLIKKMPFKPQPAIFGTLLS 349
             A  +  +   K    ++ T++S
Sbjct: 283 CAARQIFDECANK-NLVMYNTIMS 305



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 75/302 (24%), Positives = 121/302 (40%), Gaps = 74/302 (24%)

Query: 173 SSLSSVLLGCSHLSSLQLGKQVH-QLVFKSPLC-KDTTALTPLISMYCKCGDLEDACKLF 230
           +S S +L+ C  L  L   KQ+H  ++ K  LC K  + L  LI+   + G LE      
Sbjct: 26  NSSSKLLVNCKTLKEL---KQLHCDMMKKGLLCHKPASNLNKLIASSVQIGTLES----- 77

Query: 231 LEIQRK----------DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 280
           L+  R            +  +N +I GYA  G G++A+ L+ +M   G+ PD  TF  LL
Sbjct: 78  LDYARNAFGDDDGNMASLFMYNCLIRGYASAGLGDQAILLYVQMLVMGIVPDKYTFPFLL 137

Query: 281 LACN-----------------------------------HAGLVDLGIQYFDSMVNDYGI 305
            AC+                                     G VDLG + FD M+    +
Sbjct: 138 SACSKILALSEGVQVHGAVLKMGLEGDIFVSNSLIHFYAECGKVDLGRKLFDGMLERNVV 197

Query: 306 AAKPDHYTCMVDLLGRAGKLV--EAVDLIKKM---PFKPQPAIFGTLLSACRVHKRLDLA 360
           +     +T +++  G +G+ +  EAV L  +M     +P P     ++SAC   K L+L 
Sbjct: 198 S-----WTSLIN--GYSGRDLSKEAVSLFFQMGEAGVEPNPVTMVCVISACAKLKDLELG 250

Query: 361 EFA-------AMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGY 413
           +          M L  +        Y++  +I AA + +D+ A   L M    +     +
Sbjct: 251 KKVCSYISELGMELSTIMVNALVDMYMKCGDICAARQIFDECANKNLVMYNTIMSNYVHH 310

Query: 414 SW 415
            W
Sbjct: 311 EW 312


>gi|357141866|ref|XP_003572374.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Brachypodium distachyon]
          Length = 642

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 217/544 (39%), Positives = 313/544 (57%), Gaps = 20/544 (3%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
           NS+++ +AK  G L DA ELF  +PQ +VVS+  +++ +         A  F   +    
Sbjct: 111 NSLVSMYAKF-GMLDDALELFGGMPQRNVVSWTTVVAALANAPGRKKEALRFLVEMRRDG 169

Query: 70  TASWNTMISGFVQKKNM-----AKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELF 124
            A+ +   S  +          A   D+     + +    S++I  Y++ G LD    +F
Sbjct: 170 VAANSYTFSSVLGACGTPGVLAAMHADIIKVGLDSDVFVRSSLIDAYMKLGDLDSGRGVF 229

Query: 125 KVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGL---GIRPNASSLSSVLLG 181
                  +V W ++I+G+ + G        DG+  + + + +   G   N  +L+SVL  
Sbjct: 230 DEMVTCDLVVWNSIIAGFAQSG--------DGVGAMELFMRMKESGFLANQGTLTSVLRA 281

Query: 182 CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTW 241
           C+ +  L++G+QVH  V K    +D      L+ MYCKCG L DA  LF  +  +DV++W
Sbjct: 282 CTGMVMLEVGRQVHAHVLKYD--RDLILHNALLDMYCKCGCLLDADALFSRMHDRDVISW 339

Query: 242 NAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN 301
           + MISG AQ+G+  +AL++FD MK EG  P++IT V +L AC+HAGLV+ G  YF SM  
Sbjct: 340 STMISGLAQNGRSVEALKVFDLMKAEGPTPNNITMVGVLFACSHAGLVEDGWHYFRSMDK 399

Query: 302 DYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAE 361
            +GI  + +H  CMVDLLGRAGKL EA+  I +M F+P   I+ TLL ACR+HK   LA 
Sbjct: 400 LFGIQPEREHCNCMVDLLGRAGKLDEAMKFIGEMKFEPDSVIWRTLLGACRMHKNATLAS 459

Query: 362 FAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTV 421
           +AA  +  L P +  G  + L+NIYA +++W +  +   +M++  V K PG SWIE+G +
Sbjct: 460 YAATEILKLEPEDQ-GARILLSNIYADLRQWSNAEKSWKTMRDQGVKKEPGRSWIELGKL 518

Query: 422 VHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKL 481
           VH F +G+  HP    I ++L  L +R K  GYVP  EF L  +G E KE LL +HSEKL
Sbjct: 519 VHVFIAGELSHPCSDRIVQELNRLIRRAKDLGYVPQTEFVLQDLGTEQKEDLLKYHSEKL 578

Query: 482 AIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSC 541
           AIAFG +    G P+R+ KNLR+CGDCH   K +S  E + II+RD  RFHHF+ G CSC
Sbjct: 579 AIAFGTMNSMEGKPVRIMKNLRICGDCHAFAKLVSKTEGKAIIIRDPVRFHHFQHGVCSC 638

Query: 542 GDYW 545
           GDYW
Sbjct: 639 GDYW 642



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 79/172 (45%), Gaps = 10/172 (5%)

Query: 7   VNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP 66
           V WNS++AGFA Q G    A ELF ++ +   ++    L+ +L     +V   +  +++ 
Sbjct: 238 VVWNSIIAGFA-QSGDGVGAMELFMRMKESGFLANQGTLTSVLRACTGMVM-LEVGRQVH 295

Query: 67  I------KDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
                  +D    N ++  + +   +  A  LF  M +++ +SWS MISG  + G+  +A
Sbjct: 296 AHVLKYDRDLILHNALLDMYCKCGCLLDADALFSRMHDRDVISWSTMISGLAQNGRSVEA 355

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGL-GIRPN 171
           +++F +   +        + G + F        EDG    R M  L GI+P 
Sbjct: 356 LKVFDLMKAEGPTPNNITMVGVL-FACSHAGLVEDGWHYFRSMDKLFGIQPE 406


>gi|125532805|gb|EAY79370.1| hypothetical protein OsI_34497 [Oryza sativa Indica Group]
          Length = 681

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 212/533 (39%), Positives = 314/533 (58%), Gaps = 16/533 (3%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G + DA ++FD++P+ D V+++ M++   +++   + A   ++R+          ++ G 
Sbjct: 157 GAMGDAVKVFDRMPRRDRVTWSTMVAG-FVSAGQPLDAIQMYRRMREDGVKGDEVVMIGV 215

Query: 81  VQKKNMAKARDLFLAMP--------EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSV 132
           +Q    A+   +  ++           + V+ ++++  Y + G LD A  +F +   ++ 
Sbjct: 216 IQACTAARNVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRND 275

Query: 133 VAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGK 192
           V+W+AMISG+      +N  +++ L+L R M   GI+P++ +L S LL CS++  L+LG+
Sbjct: 276 VSWSAMISGF-----AQNGQSDEALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGR 330

Query: 193 QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHG 252
            VH  + +     +    T  I MY KCG L  A  LF  I  +D++ WNAMI+    HG
Sbjct: 331 SVHGFIVRR-FDFNCILGTAAIDMYSKCGSLASAQMLFNMISDRDLILWNAMIACCGAHG 389

Query: 253 KGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY 312
           +G+ AL LF +M + GM+PD  TF +LL A +H+GLV+ G  +F  MVN + I     HY
Sbjct: 390 RGQDALTLFQEMNETGMRPDHATFASLLSALSHSGLVEEGKLWFGCMVNHFKITPAEKHY 449

Query: 313 TCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNP 372
            C+VDLL R+G + EA DL+  M  +P  AI+  LLS C  +K+L+L E  A N+  L P
Sbjct: 450 VCLVDLLARSGLVEEASDLLTSMKAEPTVAIWVALLSGCLNNKKLELGESIADNILELQP 509

Query: 373 ANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVH 432
            +  G    ++N+YAA KKWD V ++R  MK++   KMPG S IE+    H F   D+ H
Sbjct: 510 DDV-GVLALVSNLYAATKKWDKVRQVRKLMKDSGSKKMPGCSSIEIRGTRHAFLMEDQSH 568

Query: 433 PELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPL 492
           P+   I  K+ +L+  M+  GY+P  EF  H + EEVKEQ L +HSEKLAIAFGL+    
Sbjct: 569 PQREEIVSKVAKLDLEMRKMGYIPRTEFVYHDLEEEVKEQQLSYHSEKLAIAFGLLNTGP 628

Query: 493 GTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           GT + + KNLRVCGDCH A KYIS I  REI+VRD  RFHHFKDG CSC DYW
Sbjct: 629 GTRLVIIKNLRVCGDCHDAIKYISKIADREIVVRDAKRFHHFKDGVCSCRDYW 681



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 84/157 (53%), Gaps = 1/157 (0%)

Query: 169 RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK 228
           RP++++ +  L  C+ L  L+ G+ V    F +    D    + L+ +Y + G + DA K
Sbjct: 105 RPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDDVFVCSSLLHLYARWGAMGDAVK 164

Query: 229 LFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGL 288
           +F  + R+D VTW+ M++G+   G+   A++++ +M+++G+K D +  + ++ AC  A  
Sbjct: 165 VFDRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDGVKGDEVVMIGVIQACTAARN 224

Query: 289 VDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKL 325
           V +G      ++  +G+       T +VD+  + G L
Sbjct: 225 VRMGASVHGHLLR-HGMRMDVVTATSLVDMYAKNGLL 260


>gi|449434268|ref|XP_004134918.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46460,
           mitochondrial-like [Cucumis sativus]
 gi|449533166|ref|XP_004173548.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46460,
           mitochondrial-like [Cucumis sativus]
          Length = 712

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 215/583 (36%), Positives = 318/583 (54%), Gaps = 46/583 (7%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M+ +  V+W +++ G   + G+++ A+ LF  +P  DV ++N M+     N   V  A +
Sbjct: 138 MSERNVVSWTTIINGLL-EFGRVEVAECLFRVMPTKDVTAWNSMVHGFFSNGR-VEDAIE 195

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK--------------------- 99
            F+++P ++  SW ++I G        +A  +F  M                        
Sbjct: 196 LFEKMPNRNVISWTSVIGGLDHNGRSFEALVVFHKMLASFKATSSTLACALTACANICTP 255

Query: 100 -----------------NSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGY 142
                            N    +++IS Y  C  +D A  +F     ++VV WTA+++GY
Sbjct: 256 FIGVQIHGLIVKTGYCFNEYISASLISFYANCKLIDNASSIFNDNVSRNVVVWTALLTGY 315

Query: 143 MKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSP 202
                  N    D L++ + M+ + + PN SSL+S L  C  L ++  G++VH +  K  
Sbjct: 316 GL-----NCRHTDALQVFKGMMRMSVLPNQSSLTSALNSCCGLEAVDRGREVHAVAHKLG 370

Query: 203 LCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFD 262
           L  D      L+ MY KCG + D   +F  + RK+VV+WN++I G AQHG G  AL LF 
Sbjct: 371 LESDIFVSNSLVVMYTKCGHINDGIAVFTRMSRKNVVSWNSIIVGCAQHGFGRWALTLFA 430

Query: 263 KMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRA 322
           +M    + PD IT   LL AC H+G++  G  +F     ++GI    +HY+ MVDLLGR 
Sbjct: 431 QMIRTRVDPDEITLAGLLSACGHSGMLTKGRCFFKHFGKNFGIEMTNEHYSSMVDLLGRY 490

Query: 323 GKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQL 382
           G+L EA  LI  MP K    ++  LLS+   H  + +AE AA  + +L P N +  Y  L
Sbjct: 491 GQLEEAEALIHIMPGKANYMVWLALLSSSINHSNVHVAERAAKCVLDLQP-NCSAAYTLL 549

Query: 383 ANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKL 442
           +N+YA+  KW +V++IR  MK+  ++K PG SWI +  + H F SGD+ HP    I++KL
Sbjct: 550 SNLYASTGKWTEVSKIRKKMKDEGILKQPGSSWITIKGIKHNFISGDQSHPLSRKIYQKL 609

Query: 443 KELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNL 502
           + L  ++K  GYVPD +F+ H V  E KE++L +HSE+LAI FGLI    G+ I V KNL
Sbjct: 610 EWLGGKLKELGYVPDPKFSFHDVETEQKEEMLSYHSERLAIGFGLISTVEGSTIIVMKNL 669

Query: 503 RVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           R+CGDCH A K  S +  REI+VRD +RFHHF +GTCSCGDYW
Sbjct: 670 RICGDCHNAVKLTSKVVGREIVVRDPSRFHHFHNGTCSCGDYW 712



 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 100/400 (25%), Positives = 195/400 (48%), Gaps = 33/400 (8%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           +++ TT   N +L+ F  + G++ +A+ LF+K+  P V  Y +M+     +   +  A  
Sbjct: 45  LSILTTPPSNYLLS-FHLRNGRIDEARSLFNKMSSPGVNLYTMMIGG-YADEGRLEDALK 102

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
            F  +P+KD  SWN+M+ G ++  ++  A ++F  M E+N VSW+ +I+G +E G+++ A
Sbjct: 103 LFYEMPVKDLISWNSMLKGCLKCGDLTMACNMFDKMSERNVVSWTTIINGLLEFGRVEVA 162

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGYVEN--------------SWAE------------ 154
             LF+V P K V AW +M+ G+   G VE+              SW              
Sbjct: 163 ECLFRVMPTKDVTAWNSMVHGFFSNGRVEDAIELFEKMPNRNVISWTSVIGGLDHNGRSF 222

Query: 155 DGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLI 214
           + L +   M+    +  +S+L+  L  C+++ +  +G Q+H L+ K+  C +      LI
Sbjct: 223 EALVVFHKMLA-SFKATSSTLACALTACANICTPFIGVQIHGLIVKTGYCFNEYISASLI 281

Query: 215 SMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSI 274
           S Y  C  +++A  +F +   ++VV W A+++GY  + +   AL++F  M    + P+  
Sbjct: 282 SFYANCKLIDNASSIFNDNVSRNVVVWTALLTGYGLNCRHTDALQVFKGMMRMSVLPNQS 341

Query: 275 TFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKK 334
           +  + L +C     VD G +   ++ +  G+ +       +V +  + G + + + +  +
Sbjct: 342 SLTSALNSCCGLEAVDRG-REVHAVAHKLGLESDIFVSNSLVVMYTKCGHINDGIAVFTR 400

Query: 335 MPFKPQPAIFGTLLSACRVH--KRLDLAEFAAMNLFNLNP 372
           M  K   + + +++  C  H   R  L  FA M    ++P
Sbjct: 401 MSRKNVVS-WNSIIVGCAQHGFGRWALTLFAQMIRTRVDP 439



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 69/267 (25%), Positives = 131/267 (49%), Gaps = 19/267 (7%)

Query: 32  KIPQPDVVSYNIMLSC-ILLNSDDVVAAFDFF--QRLPIKDTASWNTMISGFVQKKNMAK 88
           K+    ++ ++  LS  I+  +  +++    F  ++L I  T   N ++S  ++   + +
Sbjct: 9   KLLTTKILPFSFQLSVSIVRTTSSLISYICLFGTKKLSILTTPPSNYLLSFHLRNGRIDE 68

Query: 89  ARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYV 148
           AR LF  M       ++ MI GY + G+L+ A++LF   PVK +++W +M+ G +K G  
Sbjct: 69  ARSLFNKMSSPGVNLYTMMIGGYADEGRLEDALKLFYEMPVKDLISWNSMLKGCLKCG-- 126

Query: 149 ENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGK-QVHQLVFKSPLCKDT 207
                   L +   M       N  S ++++ G      L+ G+ +V + +F+    KD 
Sbjct: 127 -------DLTMACNMFDKMSERNVVSWTTIINGL-----LEFGRVEVAECLFRVMPTKDV 174

Query: 208 TALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE 267
           TA   ++  +   G +EDA +LF ++  ++V++W ++I G   +G+  +AL +F KM   
Sbjct: 175 TAWNSMVHGFFSNGRVEDAIELFEKMPNRNVISWTSVIGGLDHNGRSFEALVVFHKML-A 233

Query: 268 GMKPDSITFVALLLACNHAGLVDLGIQ 294
             K  S T    L AC +     +G+Q
Sbjct: 234 SFKATSSTLACALTACANICTPFIGVQ 260


>gi|359472776|ref|XP_002275546.2| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 896

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 217/556 (39%), Positives = 315/556 (56%), Gaps = 39/556 (7%)

Query: 22  KLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK----DTASWNTMI 77
           +++  + +FD I    +  +N M+S    N  D  A   F + + +     +T +  +++
Sbjct: 348 QVESGRRVFDHILGRRIELWNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVM 407

Query: 78  SGFVQKKNMAKARDLF-----LAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSV 132
              V  +  +    +      L   E   V  +A++  Y   G++D +  +F    V+  
Sbjct: 408 PACVHCEAFSNKESIHGYAVKLGFKEDRYVQ-NALMDMYSRMGKMDISETIFDSMEVRDR 466

Query: 133 VAWTAMISGYMKFGYVENSWAEDGLKLLRMM-----------------IGLGIRPNASSL 175
           V+W  MI+GY+  G   N+     L LL  M                  G   +PNA +L
Sbjct: 467 VSWNTMITGYVLSGRYSNA-----LVLLHEMQRMENTKDVKKDDNDDEKGGPYKPNAITL 521

Query: 176 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR 235
            +VL GC+ L+++  GK++H    ++ L  D T  + L+ MY KCG L  + ++F E+  
Sbjct: 522 MTVLPGCAALAAIAKGKEIHAYAIRNMLASDITVGSALVDMYAKCGCLNLSRRVFNEMPN 581

Query: 236 KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEG-----MKPDSITFVALLLACNHAGLVD 290
           K+V+TWN +I     HGKGE+AL LF  M  E       KP+ +TF+ +  AC+H+GL+ 
Sbjct: 582 KNVITWNVLIMACGMHGKGEEALELFKNMVAEAGRGGEAKPNEVTFITVFAACSHSGLIS 641

Query: 291 LGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK-PQPAIFGTLLS 349
            G+  F  M +D+G+    DHY C+VDLLGRAG+L EA +L+  MP +  +   + +LL 
Sbjct: 642 EGLNLFYRMKHDHGVEPTSDHYACVVDLLGRAGQLEEAYELVNTMPAEFDKVGAWSSLLG 701

Query: 350 ACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVK 409
           ACR+H+ ++L E AA NL +L P N A  YV L+NIY++   W+    +R +M++  V K
Sbjct: 702 ACRIHQNVELGEVAAKNLLHLEP-NVASHYVLLSNIYSSAGLWNKAMEVRKNMRQMGVKK 760

Query: 410 MPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEV 469
            PG SWIE    VH+F +GD  HP+   +H  L+ L ++M+  GYVPD    LH V E+ 
Sbjct: 761 EPGCSWIEFRDEVHKFMAGDVSHPQSEQLHGFLETLSEKMRKEGYVPDTSCVLHNVDEDE 820

Query: 470 KEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTT 529
           KE LL  HSEKLAIAFG++  P GT IRV KNLRVC DCH ATK+IS I +REIIVRD  
Sbjct: 821 KENLLCGHSEKLAIAFGILNTPPGTTIRVAKNLRVCNDCHAATKFISKIMEREIIVRDVR 880

Query: 530 RFHHFKDGTCSCGDYW 545
           RFHHFK+GTCSCGDYW
Sbjct: 881 RFHHFKEGTCSCGDYW 896



 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 90/339 (26%), Positives = 172/339 (50%), Gaps = 31/339 (9%)

Query: 5   TTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQR 64
           ++V   + L     + G + D  ++FD+I   D VS+N  ++  L   +    A + F+ 
Sbjct: 126 SSVTVANTLVNMYGKCGGIGDVCKVFDRITDRDQVSWNSFIAA-LCRFEKWEQALEAFRA 184

Query: 65  LPIKDTA-SWNTMISGFVQKKNMAKARDLFLA---------MPEKNSVSWSAMISGYIEC 114
           + +++   S  T++S  +   N+     L L          + ++ + + +A+++ Y + 
Sbjct: 185 MQMENMELSSFTLVSVALACSNLGVMHGLRLGKQLHGYSLRVGDQKTFTNNALMAMYAKL 244

Query: 115 GQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASS 174
           G++D +  LF+    + +V+W  MIS +      ++    + L   R+M+  G+  +  +
Sbjct: 245 GRVDDSKALFESFVDRDMVSWNTMISSF-----SQSDRFSEALAFFRLMVLEGVELDGVT 299

Query: 175 LSSVLLGCSHLSSLQLGKQVHQLVFKS-PLCKDTTALTPLISMYCKCGDLEDACKLFLEI 233
           ++SVL  CSHL  L +GK++H  V ++  L +++   + L+ MYC C  +E   ++F  I
Sbjct: 300 IASVLPACSHLERLDVGKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHI 359

Query: 234 QRKDVVTWNAMISGYAQHGKGEKALRLFDKM-KDEGMKPDSITFVALLLACNHAGLVDLG 292
             + +  WNAMISGYA++G  EKAL LF +M K  G+ P++ T  +++ AC H       
Sbjct: 360 LGRRIELWNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPACVHC------ 413

Query: 293 IQYFDSMVNDYGIAA----KPDHY--TCMVDLLGRAGKL 325
            + F +  + +G A     K D Y    ++D+  R GK+
Sbjct: 414 -EAFSNKESIHGYAVKLGFKEDRYVQNALMDMYSRMGKM 451



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 89/379 (23%), Positives = 171/379 (45%), Gaps = 35/379 (9%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQ 63
           KT  N N+++A +AK  G++ D++ LF+     D+VS+N M+S     SD    A  FF+
Sbjct: 230 KTFTN-NALMAMYAKL-GRVDDSKALFESFVDRDMVSWNTMISS-FSQSDRFSEALAFFR 286

Query: 64  RLPIKDTASWNTMISGF------VQKKNMAKARDLFLAMPE---KNSVSWSAMISGYIEC 114
            + ++        I+        +++ ++ K    ++       +NS   SA++  Y  C
Sbjct: 287 LMVLEGVELDGVTIASVLPACSHLERLDVGKEIHAYVLRNNDLIENSFVGSALVDMYCNC 346

Query: 115 GQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASS 174
            Q++    +F     + +  W AMISGY + G  E +     +  + M+   G+ PN ++
Sbjct: 347 RQVESGRRVFDHILGRRIELWNAMISGYARNGLDEKAL----ILFIEMIKVAGLLPNTTT 402

Query: 175 LSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ 234
           ++SV+  C H  +    + +H    K    +D      L+ MY + G ++ +  +F  ++
Sbjct: 403 MASVMPACVHCEAFSNKESIHGYAVKLGFKEDRYVQNALMDMYSRMGKMDISETIFDSME 462

Query: 235 RKDVVTWNAMISGYAQHGKGEKALRLFDKMK-----------------DEGMKPDSITFV 277
            +D V+WN MI+GY   G+   AL L  +M+                     KP++IT +
Sbjct: 463 VRDRVSWNTMITGYVLSGRYSNALVLLHEMQRMENTKDVKKDDNDDEKGGPYKPNAITLM 522

Query: 278 ALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPF 337
            +L  C     +  G +     + +  +A+     + +VD+  + G L  +  +  +MP 
Sbjct: 523 TVLPGCAALAAIAKGKEIHAYAIRNM-LASDITVGSALVDMYAKCGCLNLSRRVFNEMPN 581

Query: 338 KPQPAIFGTLLSACRVHKR 356
           K     +  L+ AC +H +
Sbjct: 582 K-NVITWNVLIMACGMHGK 599



 Score = 85.1 bits (209), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 83/165 (50%), Gaps = 6/165 (3%)

Query: 126 VAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHL 185
            +P +S  +W   +    +     N + E     + M +  G RP+  +  +VL   S L
Sbjct: 51  TSPSRSTASWVDALRSRTR----SNDFREAISTYIEMTVS-GARPDNFAFPAVLKAVSGL 105

Query: 186 SSLQLGKQVHQLVFKSPLCKDT-TALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAM 244
             L+ G+Q+H    K      + T    L++MY KCG + D CK+F  I  +D V+WN+ 
Sbjct: 106 QDLKTGEQIHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDVCKVFDRITDRDQVSWNSF 165

Query: 245 ISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLV 289
           I+   +  K E+AL  F  M+ E M+  S T V++ LAC++ G++
Sbjct: 166 IAALCRFEKWEQALEAFRAMQMENMELSSFTLVSVALACSNLGVM 210


>gi|145332693|ref|NP_001078212.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274431|sp|Q9LW32.1|PP258_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g26782, mitochondrial; Flags: Precursor
 gi|9279668|dbj|BAB01225.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332643694|gb|AEE77215.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 659

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 219/571 (38%), Positives = 316/571 (55%), Gaps = 82/571 (14%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIML---------------------------SCILLNSD 53
           GKL+DA+++FD+IP+ ++VS+  M+                             + L+S 
Sbjct: 125 GKLEDARKVFDEIPKRNIVSWTSMIRGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSM 184

Query: 54  DVVAAFDFFQRLPIKD-----------------TASWNTMISGFVQ--KKNMAKARDLFL 94
            +V+      R+P K                   +  NT++  + +  +  +A AR +F 
Sbjct: 185 GLVSVISACSRVPAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFD 244

Query: 95  AMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAE 154
            + +K+ VS+++++S Y + G  ++A E+F+      VV +                   
Sbjct: 245 QIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTF------------------- 285

Query: 155 DGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLI 214
                           NA +LS+VLL  SH  +L++GK +H  V +  L  D    T +I
Sbjct: 286 ----------------NAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSII 329

Query: 215 SMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSI 274
            MYCKCG +E A K F  ++ K+V +W AMI+GY  HG   KAL LF  M D G++P+ I
Sbjct: 330 DMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYI 389

Query: 275 TFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKK 334
           TFV++L AC+HAGL   G ++F++M   +G+    +HY CMVDLLGRAG L +A DLI++
Sbjct: 390 TFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQR 449

Query: 335 MPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDD 394
           M  KP   I+ +LL+ACR+HK ++LAE +   LF L+ +N  G Y+ L++IYA   +W D
Sbjct: 450 MKMKPDSIIWSSLLAACRIHKNVELAEISVARLFELDSSN-CGYYMLLSHIYADAGRWKD 508

Query: 395 VARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGY 454
           V R+R+ MK   +VK PG+S +E+   VH F  GD  HP+   I+E L EL +++  AGY
Sbjct: 509 VERVRMIMKNRGLVKPPGFSLLELNGEVHVFLIGDEEHPQREKIYEFLAELNRKLLEAGY 568

Query: 455 VPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKY 514
           V +     H V EE KE  L  HSEKLAIAFG++    G+ + V KNLRVC DCH   K 
Sbjct: 569 VSNTSSVCHDVDEEEKEMTLRVHSEKLAIAFGIMNTVPGSTVNVVKNLRVCSDCHNVIKL 628

Query: 515 ISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           IS I  RE +VRD  RFHHFKDG CSCGDYW
Sbjct: 629 ISKIVDREFVVRDAKRFHHFKDGGCSCGDYW 659



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 106/438 (24%), Positives = 200/438 (45%), Gaps = 68/438 (15%)

Query: 29  LFDK-IPQPDVVSYNIMLSCILLNSDDVVA--AFDFFQRLPIKDTAS--------WNTMI 77
           LF++ + + DV S+N +++ +  + D   A  AF   ++L +  T S         +++ 
Sbjct: 31  LFNRYVDKTDVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSSLF 90

Query: 78  SGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTA 137
             F  K+   +A   F+   + +    SA+I  Y  CG+L+ A ++F   P +++V+WT+
Sbjct: 91  DIFSGKQTHQQA---FVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTS 147

Query: 138 MISGYMKFGYVENSWAEDGLKLLRMMI------GLGIRPNASSLSSVLLGCSHLSSLQLG 191
           MI GY       N  A D + L + ++         +  ++  L SV+  CS + +  L 
Sbjct: 148 MIRGYDL-----NGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLT 202

Query: 192 KQVHQLVFKSPLCKDTTALTPLISMYCKCGD--LEDACKLFLEIQRKDVVTWNAMISGYA 249
           + +H  V K    +  +    L+  Y K G+  +  A K+F +I  KD V++N+++S YA
Sbjct: 203 ESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYA 262

Query: 250 QHGKGEKALRLFDKM-KDEGMKPDSITFVALLLACNHAGLVDLGIQYFD----------- 297
           Q G   +A  +F ++ K++ +  ++IT   +LLA +H+G + +G    D           
Sbjct: 263 QSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDV 322

Query: 298 ----SMVNDYGIAAKPD---------------HYTCMVDLLGRAGKLVEAVDLIKKM--- 335
               S+++ Y    + +                +T M+   G  G   +A++L   M   
Sbjct: 323 IVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDS 382

Query: 336 PFKPQPAIFGTLLSACRVHKRLDLAE---FAAM-NLFNLNPA-NAAGCYVQLANIYAAMK 390
             +P    F ++L+AC  H  L +     F AM   F + P     GC V L      ++
Sbjct: 383 GVRPNYITFVSVLAACS-HAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQ 441

Query: 391 KWDDVARIRLSMKENNVV 408
           K  D+ + R+ MK ++++
Sbjct: 442 KAYDLIQ-RMKMKPDSII 458


>gi|449491572|ref|XP_004158941.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 1004

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 215/550 (39%), Positives = 304/550 (55%), Gaps = 23/550 (4%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLS----CILLNSDDVVAAF 59
           +T V  ++ L     + G + D  +L++ +   D++S+N  LS    C + +    +   
Sbjct: 447 ETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLHDCGMYDRPLTI--- 503

Query: 60  DFFQRLPIKDTASWNTMISGF--------VQKKNMAKARDLFLAMPEKNSVSWSAMISGY 111
            F+  L      +  T IS          V       A  +   + + N V  +A+I  Y
Sbjct: 504 -FYHMLEEGFIPNMYTFISILGSCSCLFDVHYGRQVHAHIIKNQLDDNNFVC-TALIDMY 561

Query: 112 IECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPN 171
            +C  L+ A   F    V+ +  WT +I+ Y      + +  E  L   R M   G++PN
Sbjct: 562 AKCMYLEDADVAFNRLSVRDLFTWTVIITNY-----AQTNQGEKALNYFRQMQQEGVKPN 616

Query: 172 ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFL 231
             +L+  L GCS L+SL+ G+Q+H +VFKS    D    + L+ MY KCG +E+A  LF 
Sbjct: 617 EFTLAGCLSGCSSLASLEGGQQLHSMVFKSGHVSDMFVGSALVDMYAKCGCMEEAEALFE 676

Query: 232 EIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDL 291
            + R+D + WN +I GYAQ+G+G KAL  F  M DEG+ PD +TF  +L AC+H GLV+ 
Sbjct: 677 ALIRRDTIAWNTIICGYAQNGQGNKALTAFRMMLDEGISPDGVTFTGILSACSHQGLVEE 736

Query: 292 GIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSAC 351
           G ++F+SM  D+GI+   DH  CMVD+LGR GK  E  D I+KM       I+ T+L A 
Sbjct: 737 GKEHFNSMYRDFGISPTVDHCACMVDILGRVGKFDELEDFIQKMQLSQNALIWETVLGAS 796

Query: 352 RVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMP 411
           ++H  L L E AA  LF L P   +  Y+ L+NI+A   +WDDV R+R  M    V K P
Sbjct: 797 KMHNNLVLGEKAANKLFELQPEEESS-YILLSNIFATEGRWDDVKRVRSLMSSKGVKKEP 855

Query: 412 GYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKE 471
           G SW+E    VH F S D  HP++  IH KL EL++ +    YVP  E+ LH VGE  K+
Sbjct: 856 GCSWVEANGQVHTFVSHDYSHPQIQEIHLKLDELDRELASIQYVPKTEYVLHNVGETEKK 915

Query: 472 QLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRF 531
           + L FHSE+LA+ F LI       IR+FKNLR+C DCH   K+IS+I  +EI+VRD  RF
Sbjct: 916 ENLRFHSERLALGFALISTSSEKKIRIFKNLRICRDCHDVMKHISSITNQEIVVRDVRRF 975

Query: 532 HHFKDGTCSC 541
           HHFK+G CSC
Sbjct: 976 HHFKNGACSC 985



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 85/319 (26%), Positives = 151/319 (47%), Gaps = 15/319 (4%)

Query: 25  DAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDT----ASWNTMISGF 80
           DA  +F  I +PD+V ++ +++C L        +   F  + + DT     +  +++S  
Sbjct: 367 DAIGVFKTIKKPDIVVWSALITC-LDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAA 425

Query: 81  VQKKNMAKARDLFLAM----PEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWT 136
               N+   + +   +     E +    +A+++ Y++ G +    +L++    + +++W 
Sbjct: 426 TNTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWN 485

Query: 137 AMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQ 196
           A +SG    G  +       L +   M+  G  PN  +  S+L  CS L  +  G+QVH 
Sbjct: 486 AYLSGLHDCGMYDRP-----LTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYGRQVHA 540

Query: 197 LVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEK 256
            + K+ L  +    T LI MY KC  LEDA   F  +  +D+ TW  +I+ YAQ  +GEK
Sbjct: 541 HIIKNQLDDNNFVCTALIDMYAKCMYLEDADVAFNRLSVRDLFTWTVIITNYAQTNQGEK 600

Query: 257 ALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMV 316
           AL  F +M+ EG+KP+  T    L  C+    ++ G Q   SMV   G  +     + +V
Sbjct: 601 ALNYFRQMQQEGVKPNEFTLAGCLSGCSSLASLE-GGQQLHSMVFKSGHVSDMFVGSALV 659

Query: 317 DLLGRAGKLVEAVDLIKKM 335
           D+  + G + EA  L + +
Sbjct: 660 DMYAKCGCMEEAEALFEAL 678



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 73/246 (29%), Positives = 126/246 (51%), Gaps = 7/246 (2%)

Query: 104 WSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMM 163
           W ++++ Y +C     A  +    P + VV+WTA+I G +  G+     A D + L + M
Sbjct: 150 WVSLVNVYAKCRYSAYARLVLAKMPDRDVVSWTALIQGLVAEGF-----ANDSIYLFQEM 204

Query: 164 IGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDL 223
              GI PN  +L++ L  CS   +L LGKQ+H   FK  L  D    + L+ +Y KCG++
Sbjct: 205 QNEGIMPNEFTLATGLKACSLCMALDLGKQMHAQAFKLGLLLDLFVGSALVDLYAKCGEI 264

Query: 224 EDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC 283
           E A K+F+ +  ++ VTWN +++GYAQ G     L+LF  M +  +K +  T   +L  C
Sbjct: 265 ELASKMFIGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGC 324

Query: 284 NHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAI 343
            ++  +  G Q   S++   G          +VD+  + G  ++A+ + K +  KP   +
Sbjct: 325 ANSKNLKQG-QVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIK-KPDIVV 382

Query: 344 FGTLLS 349
           +  L++
Sbjct: 383 WSALIT 388



 Score =  108 bits (269), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 91/348 (26%), Positives = 167/348 (47%), Gaps = 25/348 (7%)

Query: 3   VKTTVN-----WNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLN--SDDV 55
           VK  +N     W S++  +AK R     A+ +  K+P  DVVS+  ++  ++    ++D 
Sbjct: 139 VKDVINPDSHLWVSLVNVYAKCRYSAY-ARLVLAKMPDRDVVSWTALIQGLVAEGFANDS 197

Query: 56  VAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK--------NSVSWSAM 107
           +  F   Q   I       T+ +G ++  ++  A DL   M  +        +    SA+
Sbjct: 198 IYLFQEMQNEGIMPNEF--TLATG-LKACSLCMALDLGKQMHAQAFKLGLLLDLFVGSAL 254

Query: 108 ISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLG 167
           +  Y +CG+++ A ++F   P ++ V W  +++GY + G V        LKL   M+ L 
Sbjct: 255 VDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQRGDVTGV-----LKLFCSMMELD 309

Query: 168 IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC 227
           ++ N  +L++VL GC++  +L+ G+ +H L+ K     +      L+ MY KCG   DA 
Sbjct: 310 VKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAI 369

Query: 228 KLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG 287
            +F  I++ D+V W+A+I+   Q G+ E++++LF  M+     P+  T  +LL A  + G
Sbjct: 370 GVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTG 429

Query: 288 LVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335
            +  G Q   + V  YG          +V +  + G + +   L + M
Sbjct: 430 NLQYG-QSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESM 476



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 79/161 (49%), Gaps = 1/161 (0%)

Query: 176 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR 235
           SS+L  C+   SL + K +H L+ K  +  D+     L+++Y KC     A  +  ++  
Sbjct: 116 SSMLRECASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVLAKMPD 175

Query: 236 KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQY 295
           +DVV+W A+I G    G    ++ LF +M++EG+ P+  T    L AC+    +DLG Q 
Sbjct: 176 RDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQ- 234

Query: 296 FDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 336
             +     G+       + +VDL  + G++  A  +   MP
Sbjct: 235 MHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMP 275



 Score = 52.0 bits (123), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 56/285 (19%), Positives = 115/285 (40%), Gaps = 60/285 (21%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           ++V+    W  ++  +A Q  + + A   F ++ Q  V      L+  L     + A+ +
Sbjct: 577 LSVRDLFTWTVIITNYA-QTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGCSSL-ASLE 634

Query: 61  FFQRLP--------IKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYI 112
             Q+L         + D    + ++  + +   M +A  LF A+  +++++W+ +I GY 
Sbjct: 635 GGQQLHSMVFKSGHVSDMFVGSALVDMYAKCGCMEEAEALFEALIRRDTIAWNTIICGYA 694

Query: 113 ECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNA 172
           + GQ +KA+  F                                    RMM+  GI P+ 
Sbjct: 695 QNGQGNKALTAF------------------------------------RMMLDEGISPDG 718

Query: 173 SSLSSVLLGCSHLSSLQLGKQVHQLVFK----SPLCKDTTALTPLISMYCKCGDLEDACK 228
            + + +L  CSH   ++ GK+    +++    SP       +  ++    K  +LED   
Sbjct: 719 VTFTGILSACSHQGLVEEGKEHFNSMYRDFGISPTVDHCACMVDILGRVGKFDELED--- 775

Query: 229 LFLEIQR--KDVVTWNAMISGYAQHGK---GEKAL-RLFDKMKDE 267
            F++  +  ++ + W  ++     H     GEKA  +LF+   +E
Sbjct: 776 -FIQKMQLSQNALIWETVLGASKMHNNLVLGEKAANKLFELQPEE 819


>gi|147865382|emb|CAN79811.1| hypothetical protein VITISV_018821 [Vitis vinifera]
          Length = 871

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 225/590 (38%), Positives = 338/590 (57%), Gaps = 61/590 (10%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCI--LLNSDDVVAAFDFFQRLPI 67
           N+V+  +AK  G +++A ++F+++   DVVS+N M++    +   DD +  F+  +   I
Sbjct: 289 NAVVDMYAKC-GMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKI 347

Query: 68  K-DTASWNTMISGFVQKKNMAKARDLFLAM----PEKNSVSWSAMISG------------ 110
           + +  +W+ +I+G+ Q+    +A D+F  M     E N V+  +++SG            
Sbjct: 348 ELNVVTWSAVIAGYAQRGLGFEALDVFRQMLLCGSEPNVVTLVSLLSGCASAGTLLHGKE 407

Query: 111 ------------------------------YIECGQLDKAVELFKVAPVK--SVVAWTAM 138
                                         Y +C     A  +F + P K  SVV WT +
Sbjct: 408 THCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVL 467

Query: 139 ISGYMKFGYVENSWAEDGLKLLRMMIGLG--IRPNASSLSSVLLGCSHLSSLQLGKQVHQ 196
           I G  + G      A + L+L   M+     + PNA ++S  L+ C+ L +L+ G+Q+H 
Sbjct: 468 IGGNAQHGE-----ANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIHA 522

Query: 197 LVFKSPLCKDTTALTP-LISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGE 255
            V ++        +   LI MY K GD++ A  +F  + +++ V+W ++++GY  HG+GE
Sbjct: 523 YVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQRNGVSWTSLMTGYGMHGRGE 582

Query: 256 KALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCM 315
           +AL++F +M+   + PD +TFV +L AC+H+G+VD GI YF+ M  D+G+    +HY CM
Sbjct: 583 EALQIFYEMQKVXLVPDGVTFVVVLYACSHSGMVDQGINYFNGMNKDFGVVPGAEHYACM 642

Query: 316 VDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANA 375
           VDLL RAG+L EA++LI+ MP KP PA++  LLSACRV+  ++L E+AA  L  L   N 
Sbjct: 643 VDLLSRAGRLDEAMELIRGMPMKPTPAVWVALLSACRVYANVELGEYAANQLLELESGND 702

Query: 376 AGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPEL 435
            G Y  L+NIYA  + W DVARIR  MK   + K PG SW++       F +GD  HP  
Sbjct: 703 -GSYTLLSNIYANARCWKDVARIRYLMKNTGIKKRPGCSWVQGRKGTATFFAGDWSHPMS 761

Query: 436 VSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTP 495
             I++ L++L +R+K  GYVPD  FALH V +E K  LL  HSEKLA+A+G++    G P
Sbjct: 762 QQIYDLLRDLMQRIKALGYVPDNRFALHDVDDEEKGDLLSEHSEKLALAYGILTTAPGAP 821

Query: 496 IRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           IR+ KNLR CGDCH A  YIS I + EIIVRD++RFHHFK+G+CSC  YW
Sbjct: 822 IRITKNLRACGDCHSAFTYISIIIEHEIIVRDSSRFHHFKNGSCSCRGYW 871



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 109/378 (28%), Positives = 183/378 (48%), Gaps = 32/378 (8%)

Query: 3   VKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQ-----PDVVSY-NIMLSCILLNS---D 53
           V   V+WNS++A +  Q G    A ++F+++ +     PD VS  N++ +C  + +    
Sbjct: 211 VGDLVSWNSIVAAYM-QGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRG 269

Query: 54  DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE 113
             V  +     L  +D    N ++  + +   M +A  +F  M  K+ VSW+AM++GY +
Sbjct: 270 KQVHGYALRSGL-FEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQ 328

Query: 114 CGQLDKAVELF-KVAPVK---SVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIR 169
            G+ D A+ LF K+   K   +VV W+A+I+GY + G        + L + R M+  G  
Sbjct: 329 IGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGL-----GFEALDVFRQMLLCGSE 383

Query: 170 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPL-------CKDTTALTPLISMYCKCGD 222
           PN  +L S+L GC+   +L  GK+ H    K  L         D   +  LI MY KC  
Sbjct: 384 PNVVTLVSLLSGCASAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINALIDMYSKCKS 443

Query: 223 LEDACKLFLEIQRKD--VVTWNAMISGYAQHGKGEKALRLFDKM--KDEGMKPDSITFVA 278
            + A  +F  I  KD  VVTW  +I G AQHG+  +AL LF +M   D  + P++ T   
Sbjct: 444 PKAARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISC 503

Query: 279 LLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 338
            L+AC   G +  G Q    ++ +   +A      C++D+  ++G  V+A  ++     +
Sbjct: 504 ALMACARLGALRFGRQIHAYVLRNRFESAMLFVANCLIDMYSKSGD-VDAARVVFDNMHQ 562

Query: 339 PQPAIFGTLLSACRVHKR 356
                + +L++   +H R
Sbjct: 563 RNGVSWTSLMTGYGMHGR 580



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 70/216 (32%), Positives = 122/216 (56%), Gaps = 15/216 (6%)

Query: 92  LFLAMPEKNSVSWSAMISGYIECGQLDKAVELF---KVAPVKSVVAWTAMISGYMKFGYV 148
           +F +  E N    + ++S Y  CG  + A ++F   +   V  +V+W ++++ YM+ G  
Sbjct: 171 VFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQGG-- 228

Query: 149 ENSWAEDGLKLL----RMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLC 204
                 D ++ +    RM   LGIRP+A SL +VL  C+ + +   GKQVH    +S L 
Sbjct: 229 ------DSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLF 282

Query: 205 KDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKM 264
           +D      ++ MY KCG +E+A K+F  ++ KDVV+WNAM++GY+Q G+ + AL LF+K+
Sbjct: 283 EDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKI 342

Query: 265 KDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV 300
           ++E ++ + +T+ A++      GL    +  F  M+
Sbjct: 343 REEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQML 378



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/242 (29%), Positives = 127/242 (52%), Gaps = 20/242 (8%)

Query: 107 MISGYIECGQLDKAVE-LFKVAPVK-SVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI 164
           +IS Y+      KA+  L ++ P   +V  W  +I   +  G++E     D L+L R M 
Sbjct: 83  IISMYLTFNSPAKALSVLRRLHPSSHTVFWWNQLIRRSVHLGFLE-----DVLQLYRRMQ 137

Query: 165 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 224
            LG RP+  +   VL  C  + S + G  VH +VF S    +      L+SMY +CG  E
Sbjct: 138 RLGWRPDHYTFPFVLKACGEIPSFRCGASVHAVVFASGFEWNVFVGNGLVSMYGRCGAWE 197

Query: 225 DACKLFLEIQRK---DVVTWNAMISGYAQHGKGEKALRLFDKM-KDEGMKPDSITFVALL 280
           +A ++F E++ +   D+V+WN++++ Y Q G   +A+++F++M +D G++PD+++ V +L
Sbjct: 198 NARQVFDEMRERGVGDLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVL 257

Query: 281 LACNHAGLVDLGIQYFDSMVNDYGIAAK--PDHY--TCMVDLLGRAGKLVEAVDLIKKMP 336
            AC   G    G Q     V+ Y + +    D +    +VD+  + G + EA  + ++M 
Sbjct: 258 PACASVGAWSRGKQ-----VHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMK 312

Query: 337 FK 338
            K
Sbjct: 313 VK 314


>gi|302761366|ref|XP_002964105.1| hypothetical protein SELMODRAFT_82024 [Selaginella moellendorffii]
 gi|300167834|gb|EFJ34438.1| hypothetical protein SELMODRAFT_82024 [Selaginella moellendorffii]
          Length = 713

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 216/550 (39%), Positives = 329/550 (59%), Gaps = 22/550 (4%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
           +S++  + + R ++++A+  FD+ P+ DVV +  M+S    N      A +  +R+ ++ 
Sbjct: 172 SSLITMYGRCR-EIEEAERAFDRSPEKDVVCWTAMISAYAHNWR-TSRALELVRRMDLEG 229

Query: 70  T----ASWNTMISGFVQKKNMAKA-----RDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
                 ++ +++       ++        R   + +   ++V    +++ Y +CG++D A
Sbjct: 230 IKLGLPTYVSLLDACASTMDLRNGVAFHQRAAAIGLDRSSTVVAGTLVNLYGKCGRVDDA 289

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLL 180
             +    PV++ V+WTAMI+ Y      +N  A + + L + M   G  P+  +L SV+ 
Sbjct: 290 RRVLDAMPVRTSVSWTAMIAAY-----AQNGNAAEAINLFQCMDLEGAEPSDITLISVVD 344

Query: 181 GCSHLSSLQLGKQVHQLVFKSP-LCKDTTALTPLISMYCKCGDLEDACKLF--LEIQRKD 237
            C+ L +L LGK++H  +  SP   +    L  +I+MY KCG+LE A ++F  + ++ + 
Sbjct: 345 SCAVLGTLSLGKRIHARIRSSPSFSQSLMLLNAVITMYGKCGNLELAREVFECVPLRTRS 404

Query: 238 VVTWNAMISGYAQHGKGEKALRLFDKMK-DEGMKPDSITFVALLLACNHAGLVDLGIQYF 296
           VVTW AMI  YAQ+G GE+A+ LF +M  D G +P+ +TF+++L AC+H G ++   ++F
Sbjct: 405 VVTWTAMIRAYAQNGVGEEAIELFQEMLIDGGTEPNRVTFLSVLCACSHLGQLEQAWEHF 464

Query: 297 DSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLI-KKMPFKPQPAIFGTLLSACRVHK 355
            SM  D+G+    DHY C+VDLLGRAG+L EA  L+ +   F+     +   LSAC+++ 
Sbjct: 465 CSMGPDFGVPPAGDHYCCLVDLLGRAGRLGEAEKLLLRHKDFEADVVCWIAFLSACQMNG 524

Query: 356 RLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSW 415
            L+ ++ AA  +  L P N AG  V L+N+YAA  +  DVARIR  MK + V K  G SW
Sbjct: 525 DLERSQRAAKRVSELEPENVAG-RVLLSNVYAAKGRRADVARIRNEMKSSGVKKFAGRSW 583

Query: 416 IEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLL 475
           IE+   VHEF   D  HP  + I+ +L+ L + +K AGYVPD +  L  V EE K QLL 
Sbjct: 584 IEINNRVHEFMVSDVSHPRKLEIYSELERLHREIKEAGYVPDTKMVLRDVDEEKKVQLLG 643

Query: 476 FHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFK 535
           +HSE+LA+A G+I  P GT +RV KNLRVC DCH ATK+IS I  R+IIVRDT+RFHHFK
Sbjct: 644 YHSERLAMALGIISTPPGTTLRVVKNLRVCSDCHAATKFISQIVGRQIIVRDTSRFHHFK 703

Query: 536 DGTCSCGDYW 545
           DG CSCGDYW
Sbjct: 704 DGVCSCGDYW 713



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 93/352 (26%), Positives = 159/352 (45%), Gaps = 57/352 (16%)

Query: 70  TASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMISGYIECGQLDKAVELFK 125
           T S N   S   Q + + + R L   +     ++N+   + ++  Y + G L  A   F 
Sbjct: 32  TVSINDYASLLWQCRGLDEVRKLHAQIAARKLDRNTFLGNVLVDAYSKHGSLHGAQLAFG 91

Query: 126 VAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHL 185
              + +  +W  +++ Y + G+   +       L   M   G+RPNA +LS+ LL C+  
Sbjct: 92  RITLHNAHSWNILMAAYAQNGHPRGA-----ATLFHWMCSQGVRPNAVTLSTALLACTAA 146

Query: 186 SSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMI 245
            +L LG+++++L+    L  D+   + LI+MY +C ++E+A + F     KDVV W AMI
Sbjct: 147 RNLALGRKLNELIASEALEIDSHVESSLITMYGRCREIEEAERAFDRSPEKDVVCWTAMI 206

Query: 246 SGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDL--GIQYFD------ 297
           S YA + +  +AL L  +M  EG+K    T+V+LL AC  A  +DL  G+ +        
Sbjct: 207 SAYAHNWRTSRALELVRRMDLEGIKLGLPTYVSLLDAC--ASTMDLRNGVAFHQRAAAIG 264

Query: 298 ----------SMVNDYGIAAKPD---------------HYTCMVDLLGRAGKLVEAVDLI 332
                     ++VN YG   + D                +T M+    + G   EA++L 
Sbjct: 265 LDRSSTVVAGTLVNLYGKCGRVDDARRVLDAMPVRTSVSWTAMIAAYAQNGNAAEAINLF 324

Query: 333 KKMPFK-PQP------------AIFGTLLSACRVHKRLDLAEFAAMNLFNLN 371
           + M  +  +P            A+ GTL    R+H R+  +   + +L  LN
Sbjct: 325 QCMDLEGAEPSDITLISVVDSCAVLGTLSLGKRIHARIRSSPSFSQSLMLLN 376



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 72/296 (24%), Positives = 130/296 (43%), Gaps = 57/296 (19%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M V+T+V+W +++A +A Q G   +A  LF  +        +I L  + ++S  V+    
Sbjct: 296 MPVRTSVSWTAMIAAYA-QNGNAAEAINLFQCMDLEGAEPSDITLISV-VDSCAVLGTLS 353

Query: 61  FFQRL--PIKDTASW-------NTMISGFVQKKNMAKARDLFLAMP--EKNSVSWSAMIS 109
             +R+   I+ + S+       N +I+ + +  N+  AR++F  +P   ++ V+W+AMI 
Sbjct: 354 LGKRIHARIRSSPSFSQSLMLLNAVITMYGKCGNLELAREVFECVPLRTRSVVTWTAMIR 413

Query: 110 GYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIR 169
            Y + G  ++A+ELF+                                    M+I  G  
Sbjct: 414 AYAQNGVGEEAIELFQ-----------------------------------EMLIDGGTE 438

Query: 170 PNASSLSSVLLGCSHLSSLQLGKQVHQLV---FKSPLCKDTTALTPLISMYCKCGDLEDA 226
           PN  +  SVL  CSHL  L+   +    +   F  P   D      L+ +  + G L +A
Sbjct: 439 PNRVTFLSVLCACSHLGQLEQAWEHFCSMGPDFGVPPAGDHYCC--LVDLLGRAGRLGEA 496

Query: 227 CKLFLEIQ--RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 280
            KL L  +    DVV W A +S    +G  E++ R   ++ +  ++P+++    LL
Sbjct: 497 EKLLLRHKDFEADVVCWIAFLSACQMNGDLERSQRAAKRVSE--LEPENVAGRVLL 550


>gi|414869441|tpg|DAA47998.1| TPA: hypothetical protein ZEAMMB73_181337 [Zea mays]
          Length = 639

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 217/544 (39%), Positives = 310/544 (56%), Gaps = 20/544 (3%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFF---QRLP 66
           NS+ + +AK  G L DA  +FD +P  +VV++  +++ +         A  F    +R  
Sbjct: 108 NSLASMYAKF-GLLDDALRMFDGMPVRNVVTWTTVVAALASADGRKQEALRFLVAMRRDG 166

Query: 67  IKDTASWNTMISGFVQKKNMAKA--RDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELF 124
           +   A   + + G      M  A       A  + +    S++I  Y++ G LD    +F
Sbjct: 167 VAPNAYTFSSVLGACTTPGMLTAVHASTVKAGLDSDVFVRSSLIDAYVKLGDLDGGRRVF 226

Query: 125 KVAPVKSVVAWTAMISGYMKFGYVENSWAEDG---LKLLRMMIGLGIRPNASSLSSVLLG 181
                + +V W ++I+G+ + G        DG   ++L   M   G   N  +L+SVL  
Sbjct: 227 DEMVTRDLVVWNSIIAGFAQSG--------DGVGAIELFMRMKDAGFSSNQGTLTSVLRA 278

Query: 182 CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTW 241
           C+ +  L+ G+QVH  V K    +D      L+ MYCKCG LEDA  LF  + ++DV++W
Sbjct: 279 CTGMVMLEAGRQVHAHVLKYD--RDLILHNALLDMYCKCGSLEDADALFHRMPQRDVISW 336

Query: 242 NAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN 301
           + M+SG AQ+GK  +ALR+FD MK +G+ P+ +T V +L AC+HAGLV+ G  YF SM  
Sbjct: 337 STMVSGLAQNGKSVEALRVFDLMKSQGVAPNHVTMVGVLFACSHAGLVEDGWHYFRSMKR 396

Query: 302 DYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAE 361
            +GI  + +H+ CMVDLLGRAGKL EAV+ I  M  +P   I+ TLL ACR+HK   LA 
Sbjct: 397 LFGIQPEREHHNCMVDLLGRAGKLDEAVEFIHGMSLEPDSVIWRTLLGACRMHKNASLAA 456

Query: 362 FAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTV 421
           +AA  +  L P +  G  V L+N YA +++W D  +   +M++  + K PG SWIE+   
Sbjct: 457 YAAREILKLEP-DDQGARVLLSNTYADLRQWTDAEKPWKAMRDRGMRKEPGRSWIELEKR 515

Query: 422 VHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKL 481
           VH F +GD  HP   +I ++L  L  R+K  GYVP  EF L  +  E KE LL +HSEK+
Sbjct: 516 VHVFIAGDLSHPCSDTIIQELNRLIGRIKSLGYVPQTEFVLQDLPTEQKEDLLKYHSEKM 575

Query: 482 AIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSC 541
           AI FG +    G PIR+ KNLR+CGDCH   K +S  E R I++RD  RFHHF+DG CSC
Sbjct: 576 AIVFGTMHAVDGKPIRIMKNLRICGDCHAFAKLVSKSEGRVIVIRDPVRFHHFQDGACSC 635

Query: 542 GDYW 545
           GDYW
Sbjct: 636 GDYW 639



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 67/127 (52%), Gaps = 6/127 (4%)

Query: 169 RPNASSLSSVLLGCSHLSSLQLGKQVHQLV-FKSPLCKDTTA----LTPLISMYCKCGDL 223
           R +  SL+ ++  C    +   G+ +H+ V    PL  D          L SMY K G L
Sbjct: 61  RADPVSLTRLVKLCVRHGTADHGRLIHRHVEAHGPLPHDGAGGLFVSNSLASMYAKFGLL 120

Query: 224 EDACKLFLEIQRKDVVTWNAMISGYAQ-HGKGEKALRLFDKMKDEGMKPDSITFVALLLA 282
           +DA ++F  +  ++VVTW  +++  A   G+ ++ALR    M+ +G+ P++ TF ++L A
Sbjct: 121 DDALRMFDGMPVRNVVTWTTVVAALASADGRKQEALRFLVAMRRDGVAPNAYTFSSVLGA 180

Query: 283 CNHAGLV 289
           C   G++
Sbjct: 181 CTTPGML 187



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 78/177 (44%), Gaps = 8/177 (4%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  +  V WNS++AGFA Q G    A ELF ++      S    L+ +L     +V    
Sbjct: 229 MVTRDLVVWNSIIAGFA-QSGDGVGAIELFMRMKDAGFSSNQGTLTSVLRACTGMVMLEA 287

Query: 61  FFQRLPI-----KDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECG 115
             Q         +D    N ++  + +  ++  A  LF  MP+++ +SWS M+SG  + G
Sbjct: 288 GRQVHAHVLKYDRDLILHNALLDMYCKCGSLEDADALFHRMPQRDVISWSTMVSGLAQNG 347

Query: 116 QLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGL-GIRPN 171
           +  +A+ +F +   + V      + G + F        EDG    R M  L GI+P 
Sbjct: 348 KSVEALRVFDLMKSQGVAPNHVTMVGVL-FACSHAGLVEDGWHYFRSMKRLFGIQPE 403


>gi|414865780|tpg|DAA44337.1| TPA: hypothetical protein ZEAMMB73_255594 [Zea mays]
          Length = 665

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 206/510 (40%), Positives = 293/510 (57%), Gaps = 44/510 (8%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFK-------- 125
           ++ IS + +      A  +F  MP ++ VSW+AMI+G+   G  D+A+E+FK        
Sbjct: 162 HSAISMYSRCGRPEDAYRVFDGMPHRDVVSWNAMIAGFARVGLFDRAIEVFKQFVVLQGS 221

Query: 126 ---------VAPV---------------------KSVVAWTAMISGYMKFGYVENSWAED 155
                    + P                      K +++W AM++ Y       N +   
Sbjct: 222 MPDAGTMAGILPAMGNAKPDDIRFVRRVFDNMQFKELISWNAMLAVY-----ANNEFHVK 276

Query: 156 GLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLIS 215
            ++L  +M    + P++ +L++VL  C  LS+  +GK++H+++ +  +C +      L+ 
Sbjct: 277 AVELFMLMEKDEVEPDSITLATVLPPCGELSAFSVGKRIHEIIKRKNMCPNLLLENALMD 336

Query: 216 MYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSIT 275
           MY  CG L+DA ++F  +  +DV++W ++IS Y +HG G +A+ LF+KM  +G++PDSI 
Sbjct: 337 MYASCGCLKDAREIFDLMSARDVISWTSIISAYGKHGHGREAVDLFEKMLGQGLEPDSIA 396

Query: 276 FVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335
           FVA+L AC+HAGL+  G  YFDSM + Y I  K +HYTCMVDLLGRAG + EA D I  M
Sbjct: 397 FVAVLAACSHAGLLADGKHYFDSMTSRYHIIPKAEHYTCMVDLLGRAGCINEAYDFITTM 456

Query: 336 PFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDV 395
             +P   ++G LL ACR+H  +D+   AA NLF+L P    G YV L+N+YA   +W DV
Sbjct: 457 LIEPNERVWGALLQACRIHSNMDIGLVAADNLFSLVPEQ-TGYYVLLSNMYARAGRWADV 515

Query: 396 ARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYV 455
             +R  M    + K PG S +E+G  VH F  GDR HP+   I+ KL EL  +++  GY 
Sbjct: 516 TSVRSVMVNKGIKKFPGTSIVELGDQVHTFHIGDRCHPQSEMIYHKLDELLGKIRGMGYN 575

Query: 456 PDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYI 515
           P++E  LH V EE KE  L  HSEKLAIAF L+    GT IRV  NLR C DCH A K I
Sbjct: 576 PEVEATLHDVEEEDKEDHLSVHSEKLAIAFLLLNTSPGTIIRVTMNLRTCSDCHLAAKLI 635

Query: 516 SAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           S I  REI+++DT R HH   G CSCGDYW
Sbjct: 636 SIITCREIVLKDTNRIHHIVQGVCSCGDYW 665



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 76/275 (27%), Positives = 122/275 (44%), Gaps = 15/275 (5%)

Query: 87  AKARDLFLAMPEKNSVSWS--AMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMK 144
           A AR L L  P   S + +   +I  Y  C  L  A  + + +        T +    + 
Sbjct: 34  AHARLLVLLHPSHPSAAHANVKLIQAYAACSALPLAHTVLESSSPDGRSRTTTVCFNVLI 93

Query: 145 FGYVENSWAEDGLKLLRMMI--GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSP 202
                +S   D L L   M   G    P+  +    L  CS    L LG Q+H  V K  
Sbjct: 94  RALTASSLHRDALVLFASMRPRGPACFPDHYTYPLALKSCSASKDLLLGLQIHSAVAKLR 153

Query: 203 LCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFD 262
           L ++       ISMY +CG  EDA ++F  +  +DVV+WNAMI+G+A+ G  ++A+ +F 
Sbjct: 154 LDRNVYVAHSAISMYSRCGRPEDAYRVFDGMPHRDVVSWNAMIAGFARVGLFDRAIEVFK 213

Query: 263 K-MKDEGMKPDSITFVALLLACNHAGLVDLGI--QYFDSMVNDYGIAAKPDHYTCMVDLL 319
           + +  +G  PD+ T   +L A  +A   D+    + FD+M     I+     +  M+ + 
Sbjct: 214 QFVVLQGSMPDAGTMAGILPAMGNAKPDDIRFVRRVFDNMQFKELIS-----WNAMLAVY 268

Query: 320 GRAGKLVEAVD---LIKKMPFKPQPAIFGTLLSAC 351
                 V+AV+   L++K   +P      T+L  C
Sbjct: 269 ANNEFHVKAVELFMLMEKDEVEPDSITLATVLPPC 303



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 80/390 (20%), Positives = 152/390 (38%), Gaps = 96/390 (24%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKI-----PQPDVVSYNIMLSCI-LLNSDD 54
           M  +  V+WN+++AGFA+  G    A E+F +        PD  +   +L  +     DD
Sbjct: 184 MPHRDVVSWNAMIAGFARV-GLFDRAIEVFKQFVVLQGSMPDAGTMAGILPAMGNAKPDD 242

Query: 55  VVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWS----- 105
           +      F  +  K+  SWN M++ +   +   KA +LF+ M     E +S++ +     
Sbjct: 243 IRFVRRVFDNMQFKELISWNAMLAVYANNEFHVKAVELFMLMEKDEVEPDSITLATVLPP 302

Query: 106 ------------------------------AMISGYIECGQLDKAVELFKVAPVKSVVAW 135
                                         A++  Y  CG L  A E+F +   + V++W
Sbjct: 303 CGELSAFSVGKRIHEIIKRKNMCPNLLLENALMDMYASCGCLKDAREIFDLMSARDVISW 362

Query: 136 TAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ-V 194
           T++IS Y K G+       + + L   M+G G+ P++ +  +VL  CSH   L  GK   
Sbjct: 363 TSIISAYGKHGH-----GREAVDLFEKMLGQGLEPDSIAFVAVLAACSHAGLLADGKHYF 417

Query: 195 HQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKG 254
             +  +  +       T ++ +  + G + +A                            
Sbjct: 418 DSMTSRYHIIPKAEHYTCMVDLLGRAGCINEA---------------------------- 449

Query: 255 EKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTC 314
                 +D +    ++P+   + ALL AC     +D+G+   D++ +   +  +  +Y  
Sbjct: 450 ------YDFITTMLIEPNERVWGALLQACRIHSNMDIGLVAADNLFS--LVPEQTGYYVL 501

Query: 315 MVDLLGRAGKLVEAVDL--------IKKMP 336
           + ++  RAG+  +   +        IKK P
Sbjct: 502 LSNMYARAGRWADVTSVRSVMVNKGIKKFP 531


>gi|449457516|ref|XP_004146494.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Cucumis sativus]
          Length = 650

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 205/548 (37%), Positives = 321/548 (58%), Gaps = 18/548 (3%)

Query: 9   WNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCIL------LNSD--DVVAAFD 60
           W +++ G+A Q G L ++   + ++ +  V   +   S +       LN D    V A  
Sbjct: 110 WTAMIRGYALQ-GLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGKQVHAQT 168

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
                   D    N+MI  +V+   +  AR +F  M E++ VSW+ +I  Y + G ++ A
Sbjct: 169 ILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKYGDMESA 228

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLL 180
             LF   P+K +VAWTAM++GY      +N   ++ L+  + M  +G+  +  +L+ V+ 
Sbjct: 229 SGLFDDLPLKDMVAWTAMVTGY-----AQNGRPKEALEYFQKMQDVGMETDEVTLAGVIS 283

Query: 181 GCSHLSSLQLGKQVHQLVFKSPLCKDTTAL--TPLISMYCKCGDLEDACKLFLEIQRKDV 238
            C+ L +++    +  +  +S        +  + LI MY KCG  ++A K+F  ++ ++V
Sbjct: 284 ACAQLGAVKHANWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERNV 343

Query: 239 VTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDS 298
            ++++MI GYA HG+   AL+LF  M    ++P+ +TF+ +L AC+HAGLV+ G Q F  
Sbjct: 344 FSYSSMILGYAMHGRAHSALQLFHDMLKTEIRPNKVTFIGILSACSHAGLVEQGRQLFAK 403

Query: 299 MVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLD 358
           M   +G+A  PDHY CMVDLLGRAG L EA+DL+K MP +P   ++G LL ACR+H   D
Sbjct: 404 MEKFFGVAPSPDHYACMVDLLGRAGCLEEALDLVKTMPMEPNGGVWGALLGACRIHGNPD 463

Query: 359 LAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIE- 417
           +A+ AA  LF L P N  G Y+ L+NIYA+  +W++V+++R  ++E    K PG SW E 
Sbjct: 464 IAQIAANELFKLEP-NGIGNYILLSNIYASAGRWEEVSKLRKVIREKGFKKNPGCSWFEG 522

Query: 418 VGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFH 477
               +H+F +GD  HP    I + LK+L +R++  GY P+L  A + + ++ KE++L+ H
Sbjct: 523 KNGEIHDFFAGDTTHPRSSEIRQALKQLIERLRSHGYKPNLGSAPYDLTDDEKERILMSH 582

Query: 478 SEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDG 537
           SEKLA+A+GL+    G  I++ KN+R+C DCH      S I  REIIVRD  RFHHF +G
Sbjct: 583 SEKLALAYGLLCTEAGDTIKIMKNIRICEDCHNVMCAASEITGREIIVRDNMRFHHFHNG 642

Query: 538 TCSCGDYW 545
           TCSCG++W
Sbjct: 643 TCSCGNFW 650



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 92/339 (27%), Positives = 137/339 (40%), Gaps = 75/339 (22%)

Query: 100 NSVSWSAMISGYIECGQLDKAVELFK------VAPV--------------------KSVV 133
           N   W+AMI GY   G L ++   +       V PV                    K V 
Sbjct: 106 NPFLWTAMIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGKQVH 165

Query: 134 AWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ 193
           A T +I G+    YV NS           MI L ++          LGC+          
Sbjct: 166 AQTILIGGFASDLYVGNS-----------MIDLYVKCG-------FLGCA---------- 197

Query: 194 VHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGK 253
             + VF     +D  + T LI  Y K GD+E A  LF ++  KD+V W AM++GYAQ+G+
Sbjct: 198 --RKVFDEMSERDVVSWTELIVAYAKYGDMESASGLFDDLPLKDMVAWTAMVTGYAQNGR 255

Query: 254 GEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFD-SMVNDYGIAAKPDHY 312
            ++AL  F KM+D GM+ D +T   ++ AC   G V       D +  + +G +      
Sbjct: 256 PKEALEYFQKMQDVGMETDEVTLAGVISACAQLGAVKHANWIRDIAERSGFGPSGNVVVG 315

Query: 313 TCMVDLLGRAGKLVEAVDLIKKMP----FKPQPAIFGTLLSACRVHKRLDLAEFAAMNLF 368
           + ++D+  + G   EA  + + M     F     I G  +   R H  L L  F  M   
Sbjct: 316 SALIDMYSKCGSPDEAYKVFEVMKERNVFSYSSMILGYAMHG-RAHSALQL--FHDMLKT 372

Query: 369 NLNP-----------ANAAGCYVQLANIYAAMKKWDDVA 396
            + P            + AG   Q   ++A M+K+  VA
Sbjct: 373 EIRPNKVTFIGILSACSHAGLVEQGRQLFAKMEKFFGVA 411



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 76/163 (46%), Gaps = 5/163 (3%)

Query: 175 LSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL--FLE 232
           L S+L  C+  S +   KQVH  + ++ L + +  LT LI M  K      +  L  F +
Sbjct: 45  LMSILHDCTLFSQI---KQVHAHIIRNGLSQCSYVLTKLIRMLTKVDVPMGSYPLLVFGQ 101

Query: 233 IQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 292
           +   +   W AMI GYA  G   ++   + +M+ +G+ P S TF AL  AC  A  +DLG
Sbjct: 102 VNYPNPFLWTAMIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLG 161

Query: 293 IQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335
            Q     +   G A+       M+DL  + G L  A  +  +M
Sbjct: 162 KQVHAQTILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEM 204


>gi|326509777|dbj|BAJ87104.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 624

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 207/478 (43%), Positives = 289/478 (60%), Gaps = 7/478 (1%)

Query: 69  DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAP 128
           D+     ++S + +  + A AR LF  MP+ + VS +AM++ Y   G LD A  LF   P
Sbjct: 153 DSYVATALLSMYARAGDAAAARALFDEMPDPHVVSVTAMLTCYANMGALDDARRLFDGLP 212

Query: 129 VKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSL 188
            K  + W AMI GY + G        + L+L R M+     P+  ++  VL   + L ++
Sbjct: 213 RKDFICWNAMIDGYTQHGK-----PNEALQLFRRMLRSSAEPDEVTVVLVLSAVAQLGTV 267

Query: 189 QLGKQVHQLVFKSPLCK-DTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISG 247
           + GK +H  V  S   + +    T L+ MYCKCG LEDA  +F  I  KD+V WNAMI+G
Sbjct: 268 ESGKWLHSYVKNSRCVQLNVRVATALVDMYCKCGSLEDAVAVFHGIGNKDIVVWNAMING 327

Query: 248 YAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAA 307
           YA HG   KAL +F +++D+G+ P  ITF+ LL AC+H+GLV+ G  +F SM ++YGI  
Sbjct: 328 YAMHGDSRKALEMFVQLRDQGLWPTDITFIGLLNACSHSGLVEEGRSFFQSMEHEYGIDP 387

Query: 308 KPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNL 367
           K +HY CMVDLLGRAG + EA  L++ +   P   ++ +LL+ACR+HK + L +  A  L
Sbjct: 388 KIEHYGCMVDLLGRAGLIEEAFHLVQSLTITPDAVMWVSLLAACRLHKNMALGQRIADFL 447

Query: 368 FNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRS 427
                AN+ G Y+ L+NIYAA+ KW++VAR+R  MK + + K PG S IE+   V+EF +
Sbjct: 448 VANGLANS-GMYILLSNIYAAVGKWEEVARVRSMMKASGIQKEPGCSAIEIDRKVYEFVA 506

Query: 428 GDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGL 487
           GD  HP    I+  L ++   +K  G+VP  E  LH + E  KE+ L  HSEKLA+AFGL
Sbjct: 507 GDMSHPCTDEIYAMLDKMNALVKEHGHVPQTELVLHDLDEATKEKALAVHSEKLAVAFGL 566

Query: 488 IKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           I    G+ I++ KNLR C DCH   K IS I  R+I+ RD  RFHHF DG+C+CGDYW
Sbjct: 567 ISSRPGSTIKIVKNLRACSDCHAVLKLISKITSRKIVFRDRNRFHHFVDGSCTCGDYW 624



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 76/251 (30%), Positives = 109/251 (43%), Gaps = 39/251 (15%)

Query: 110 GYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIR 169
            Y   G+LD ++ L       + + +T+ I  +   G         GL LL  M+  G+ 
Sbjct: 65  AYAASGRLDHSLTLLGRTKDPTTIFYTSAIHAHSSRGL-----HLPGLALLSDMLSEGLL 119

Query: 170 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMY------------ 217
           P A +LS+ L  C  LS   LG+ +H   FK  L  D+   T L+SMY            
Sbjct: 120 PTAHTLSASLPACRGLS---LGRALHAYAFKLALSGDSYVATALLSMYARAGDAAAARAL 176

Query: 218 -------------------CKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKAL 258
                                 G L+DA +LF  + RKD + WNAMI GY QHGK  +AL
Sbjct: 177 FDEMPDPHVVSVTAMLTCYANMGALDDARRLFDGLPRKDFICWNAMIDGYTQHGKPNEAL 236

Query: 259 RLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDL 318
           +LF +M     +PD +T V +L A    G V+ G      + N   +       T +VD+
Sbjct: 237 QLFRRMLRSSAEPDEVTVVLVLSAVAQLGTVESGKWLHSYVKNSRCVQLNVRVATALVDM 296

Query: 319 LGRAGKLVEAV 329
             + G L +AV
Sbjct: 297 YCKCGSLEDAV 307


>gi|296089956|emb|CBI39775.3| unnamed protein product [Vitis vinifera]
          Length = 599

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 202/481 (41%), Positives = 289/481 (60%), Gaps = 10/481 (2%)

Query: 69  DTASWNTMISGFVQKKNMAKARDLFLAMPE----KNSVSWSAMISGYIECGQLDKAVELF 124
           +T  WN+ +    +  +   A  LF  + +     ++ + S+++   +    L     L 
Sbjct: 125 ETFVWNSCLKALAEGDSPIDAIMLFYRLRQYDVCPDTFTCSSVLRACLNLLDLSNGRILH 184

Query: 125 KVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSH 184
            V       +WT+MI+GY++ G      A++ + L   M   G++ N  ++ +VL  C+ 
Sbjct: 185 GVVEKVGFRSWTSMIAGYVQCGK-----AKEAIHLFAKMEEAGVKCNEVTVVAVLAACAD 239

Query: 185 LSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAM 244
           L +L LG ++H+   +    ++      LI MY KCG LE+ACK+F E++ + VV+W+AM
Sbjct: 240 LGALDLGMRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAM 299

Query: 245 ISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYG 304
           I G A HG+ E+ALRLF  M   G++P+ +TF+ LL AC+H GL+  G ++F SM  DYG
Sbjct: 300 IGGLAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYG 359

Query: 305 IAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAA 364
           I  + +HY CMVDLL RAG L EA + I  MP KP   ++G LL ACRVHK +++AE A 
Sbjct: 360 IIPQIEHYGCMVDLLSRAGLLHEAHEFILNMPMKPNGVVWGALLGACRVHKNVEMAEEAI 419

Query: 365 MNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHE 424
            +L  L+P N  G YV L+NIYA   +W+D AR+R  MK+  V K PG+S I V  VVHE
Sbjct: 420 KHLLELDPLN-DGYYVVLSNIYAEAGRWEDTARVRKFMKDRQVKKTPGWSSITVDGVVHE 478

Query: 425 FRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIA 484
           F +G+  HP+   I ++ +EL + M+L GYVP+    L  + E  K + +  HSEKLA+ 
Sbjct: 479 FVAGEESHPDTEQIFQRWEELLEEMRLKGYVPNTSVVLLDIEEGEKVKFVSRHSEKLALV 538

Query: 485 FGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDY 544
           FGL+  P  TPIR+ KNLR+C DCH A K ISAI  REI+VRD  RFH F D +CSC DY
Sbjct: 539 FGLMNTPAETPIRIMKNLRICEDCHSAFKLISAIVNREIVVRDRNRFHCFNDNSCSCRDY 598

Query: 545 W 545
           W
Sbjct: 599 W 599



 Score = 42.0 bits (97), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 61/259 (23%), Positives = 111/259 (42%), Gaps = 35/259 (13%)

Query: 167 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKS--PLCKDTTALTPLISMYCKCG--- 221
            ++P +S    + L  +  S  +L +QVH  + K+  PL     ++ PL  +   C    
Sbjct: 54  NVKPQSSETLKIDLLRNFNSPFEL-RQVHAQIIKTNAPL-----SILPLTRVGLVCAFTP 107

Query: 222 DLEDACKLF--LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVAL 279
               A ++F  +E Q+ +   WN+ +   A+      A+ LF +++   + PD+ T  ++
Sbjct: 108 SFHYAQQIFKCVEKQKPETFVWNSCLKALAEGDSPIDAIMLFYRLRQYDVCPDTFTCSSV 167

Query: 280 LLACNHAGLVDLGI-QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP-- 336
           L AC    L+DL   +    +V   G  +    +T M+    + GK  EA+ L  KM   
Sbjct: 168 LRAC--LNLLDLSNGRILHGVVEKVGFRS----WTSMIAGYVQCGKAKEAIHLFAKMEEA 221

Query: 337 -FKPQPAIFGTLLSACRVHKRLDLA----EFAAMNLF--NLNPANAAGCYVQLANIYAAM 389
             K        +L+AC     LDL     E++  + F  N+  +N       L ++Y   
Sbjct: 222 GVKCNEVTVVAVLAACADLGALDLGMRIHEYSNRHGFKRNVRISNT------LIDMYVKC 275

Query: 390 KKWDDVARIRLSMKENNVV 408
              ++  ++   M+E  VV
Sbjct: 276 GCLEEACKVFEEMEERTVV 294


>gi|30693150|ref|NP_190486.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75222188|sp|Q5G1T1.1|PP272_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g49170, chloroplastic; AltName: Full=Protein EMBRYO
           DEFECTIVE 2261; Flags: Precursor
 gi|58013018|gb|AAW62962.1| embryo-defective 2261 [Arabidopsis thaliana]
 gi|58013020|gb|AAW62963.1| embryo-defective 2261 [Arabidopsis thaliana]
 gi|332644986|gb|AEE78507.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 850

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 206/538 (38%), Positives = 313/538 (58%), Gaps = 19/538 (3%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWN--TMIS 78
           G + D +++FD++    V+S+  +++  + N +    A + F  +  +     N  T  S
Sbjct: 319 GSVDDCRKVFDRMEDHSVMSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSS 378

Query: 79  GFVQKKNMAKAR-------DLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKS 131
            F    N++  R         F      NS   +++IS +++  +++ A   F+    K+
Sbjct: 379 AFKACGNLSDPRVGKQVLGQAFKRGLASNSSVANSVISMFVKSDRMEDAQRAFESLSEKN 438

Query: 132 VVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLG 191
           +V++   + G  +     N   E   KLL  +    +  +A + +S+L G +++ S++ G
Sbjct: 439 LVSYNTFLDGTCR-----NLNFEQAFKLLSEITERELGVSAFTFASLLSGVANVGSIRKG 493

Query: 192 KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQH 251
           +Q+H  V K  L  +      LISMY KCG ++ A ++F  ++ ++V++W +MI+G+A+H
Sbjct: 494 EQIHSQVVKLGLSCNQPVCNALISMYSKCGSIDTASRVFNFMENRNVISWTSMITGFAKH 553

Query: 252 GKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDH 311
           G   + L  F++M +EG+KP+ +T+VA+L AC+H GLV  G ++F+SM  D+ I  K +H
Sbjct: 554 GFAIRVLETFNQMIEEGVKPNEVTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEH 613

Query: 312 YTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLN 371
           Y CMVDLL RAG L +A + I  MPF+    ++ T L ACRVH   +L + AA  +  L+
Sbjct: 614 YACMVDLLCRAGLLTDAFEFINTMPFQADVLVWRTFLGACRVHSNTELGKLAARKILELD 673

Query: 372 PANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRV 431
           P N    Y+QL+NIYA   KW++   +R  MKE N+VK  G SWIEVG  +H+F  GD  
Sbjct: 674 P-NEPAAYIQLSNIYACAGKWEESTEMRRKMKERNLVKEGGCSWIEVGDKIHKFYVGDTA 732

Query: 432 HPELVSIHEKLKELEKRMKLAGYVPDLEFALHAV----GEEVKEQLLLFHSEKLAIAFGL 487
           HP    I+++L  L   +K  GYVPD +  LH +     E  KE+LL  HSEK+A+AFGL
Sbjct: 733 HPNAHQIYDELDRLITEIKRCGYVPDTDLVLHKLEEENDEAEKERLLYQHSEKIAVAFGL 792

Query: 488 IKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           I      P+RVFKNLRVCGDCH A KYIS +  REI++RD  RFHHFKDG CSC DYW
Sbjct: 793 ISTSKSRPVRVFKNLRVCGDCHNAMKYISTVSGREIVLRDLNRFHHFKDGKCSCNDYW 850



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 94/399 (23%), Positives = 171/399 (42%), Gaps = 61/399 (15%)

Query: 6   TVNWNSVLAGFAKQR----GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVA--AF 59
           +V ++S+L    + R    GKL  A+ L +   +PD V YN ++S    + D   A   F
Sbjct: 62  SVTFSSLLKSCIRARDFRLGKLVHAR-LIEFDIEPDSVLYNSLISLYSKSGDSAKAEDVF 120

Query: 60  DFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPE----KNSVSWSAMI------- 108
           +  +R   +D  SW+ M++ +        A  +F+   E     N   ++A+I       
Sbjct: 121 ETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVPNDYCYTAVIRACSNSD 180

Query: 109 --------------SGYIE------CGQLD----------KAVELFKVAPVKSVVAWTAM 138
                         +G+ E      C  +D           A ++F      +VV WT M
Sbjct: 181 FVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSELNVVTWTLM 240

Query: 139 ISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLV 198
           I+  M+ G+       + ++    M+  G   +  +LSSV   C+ L +L LGKQ+H   
Sbjct: 241 ITRCMQMGF-----PREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGKQLHSWA 295

Query: 199 FKSPLCKDTTALTPLISMYCKC---GDLEDACKLFLEIQRKDVVTWNAMISGYAQHGK-G 254
            +S L  D      L+ MY KC   G ++D  K+F  ++   V++W A+I+GY ++    
Sbjct: 296 IRSGLVDDVEC--SLVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTALITGYMKNCNLA 353

Query: 255 EKALRLFDKMKDEG-MKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYT 313
            +A+ LF +M  +G ++P+  TF +   AC +     +G Q         G+A+      
Sbjct: 354 TEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRVGKQVLGQAFK-RGLASNSSVAN 412

Query: 314 CMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACR 352
            ++ +  ++ ++ +A    + +  K   +    L   CR
Sbjct: 413 SVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCR 451



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 79/289 (27%), Positives = 135/289 (46%), Gaps = 37/289 (12%)

Query: 32  KIP---QPDVVS-YNIMLSCIL--LNSDDV---VAAFDFFQRLPIK--DTASWNTMISGF 80
           K+P   QP V +  N+    IL  LN+ D+   V+A D   R  I+  D+ ++++++   
Sbjct: 13  KLPIKSQPSVSNRINVADRLILRHLNAGDLRGAVSALDLMARDGIRPMDSVTFSSLL--- 69

Query: 81  VQKKNMAKARDLFLAM----------PEKNSVSWSAMISGYIECGQLDKAVELFKVAPV- 129
              K+  +ARD  L             E +SV ++++IS Y + G   KA ++F+     
Sbjct: 70  ---KSCIRARDFRLGKLVHARLIEFDIEPDSVLYNSLISLYSKSGDSAKAEDVFETMRRF 126

Query: 130 --KSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSS 187
             + VV+W+AM++ Y       N    D +K+    + LG+ PN    ++V+  CS+   
Sbjct: 127 GKRDVVSWSAMMACYGN-----NGRELDAIKVFVEFLELGLVPNDYCYTAVIRACSNSDF 181

Query: 188 LQLGKQVHQLVFKSP-LCKDTTALTPLISMYCKC-GDLEDACKLFLEIQRKDVVTWNAMI 245
           + +G+     + K+     D      LI M+ K     E+A K+F ++   +VVTW  MI
Sbjct: 182 VGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSELNVVTWTLMI 241

Query: 246 SGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ 294
           +   Q G   +A+R F  M   G + D  T  ++  AC     + LG Q
Sbjct: 242 TRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGKQ 290


>gi|15237421|ref|NP_197188.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174141|sp|Q9LFL5.1|PP390_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g16860
 gi|9755687|emb|CAC01699.1| putative protein [Arabidopsis thaliana]
 gi|332004967|gb|AED92350.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 850

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 215/581 (37%), Positives = 327/581 (56%), Gaps = 64/581 (11%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCI--LLNSDDVVAAFDFFQRLPIK-DTASWNTMI 77
           G + +A  +F  +   DVVS+N M++    +   +D V  F+  Q   IK D  +W+  I
Sbjct: 278 GMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAI 337

Query: 78  SGFVQK----KNMAKARDLFLAMPEKNSVSWSAMISG----------------------- 110
           SG+ Q+    + +   R +  +  + N V+  +++SG                       
Sbjct: 338 SGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPID 397

Query: 111 -------------------YIECGQLDKAVELF-KVAP-VKSVVAWTAMISGYMKFGYVE 149
                              Y +C ++D A  +F  ++P  + VV WT MI GY + G   
Sbjct: 398 LRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGD-- 455

Query: 150 NSWAEDGLKLLRMMI--GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDT 207
              A   L+LL  M       RPNA ++S  L+ C+ L++L++GKQ+H    ++   ++ 
Sbjct: 456 ---ANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALRIGKQIHAYALRNQ--QNA 510

Query: 208 TAL---TPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKM 264
             L     LI MY KCG + DA  +F  +  K+ VTW ++++GY  HG GE+AL +FD+M
Sbjct: 511 VPLFVSNCLIDMYAKCGSISDARLVFDNMMAKNEVTWTSLMTGYGMHGYGEEALGIFDEM 570

Query: 265 KDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGK 324
           +  G K D +T + +L AC+H+G++D G++YF+ M   +G++  P+HY C+VDLLGRAG+
Sbjct: 571 RRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTVFGVSPGPEHYACLVDLLGRAGR 630

Query: 325 LVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLAN 384
           L  A+ LI++MP +P P ++   LS CR+H +++L E+AA  +  L  +N  G Y  L+N
Sbjct: 631 LNAALRLIEEMPMEPPPVVWVAFLSCCRIHGKVELGEYAAEKITEL-ASNHDGSYTLLSN 689

Query: 385 IYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKE 444
           +YA   +W DV RIR  M+   V K PG SW+E       F  GD+ HP    I++ L +
Sbjct: 690 LYANAGRWKDVTRIRSLMRHKGVKKRPGCSWVEGIKGTTTFFVGDKTHPHAKEIYQVLLD 749

Query: 445 LEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRV 504
             +R+K  GYVP+  FALH V +E K+ LL  HSEKLA+A+G++  P G  IR+ KNLRV
Sbjct: 750 HMQRIKDIGYVPETGFALHDVDDEEKDDLLFEHSEKLALAYGILTTPQGAAIRITKNLRV 809

Query: 505 CGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           CGDCH A  Y+S I   +II+RD++RFHHFK+G+CSC  YW
Sbjct: 810 CGDCHTAFTYMSRIIDHDIILRDSSRFHHFKNGSCSCKGYW 850



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 106/351 (30%), Positives = 175/351 (49%), Gaps = 29/351 (8%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIP-----QPDVVSY-NIMLSCILLNSDD 54
           M+V   V+WNS++  +AK  GK K A E+F ++      +PD ++  N++  C  L +  
Sbjct: 188 MSVWDVVSWNSIIESYAKL-GKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCASLGTHS 246

Query: 55  VVAAFDFFQRLP--IKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYI 112
           +      F      I++    N ++  + +   M +A  +F  M  K+ VSW+AM++GY 
Sbjct: 247 LGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYS 306

Query: 113 ECGQLDKAVELFKVAPVK----SVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGI 168
           + G+ + AV LF+    +     VV W+A ISGY + G        + L + R M+  GI
Sbjct: 307 QIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGL-----GYEALGVCRQMLSSGI 361

Query: 169 RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPL-------CKDTTALTPLISMYCKCG 221
           +PN  +L SVL GC+ + +L  GK++H    K P+         +   +  LI MY KC 
Sbjct: 362 KPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCK 421

Query: 222 DLEDACKLF--LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEG--MKPDSITFV 277
            ++ A  +F  L  + +DVVTW  MI GY+QHG   KAL L  +M +E    +P++ T  
Sbjct: 422 KVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTIS 481

Query: 278 ALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEA 328
             L+AC     + +G Q     + +   A       C++D+  + G + +A
Sbjct: 482 CALVACASLAALRIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSISDA 532



 Score =  115 bits (287), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 65/185 (35%), Positives = 105/185 (56%), Gaps = 6/185 (3%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLL-RMM 163
           +A+++ Y  C  L  A ++F    V  VV+W ++I  Y K G       +  L++  RM 
Sbjct: 166 NALVAMYSRCRSLSDARKVFDEMSVWDVVSWNSIIESYAKLGK-----PKVALEMFSRMT 220

Query: 164 IGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDL 223
              G RP+  +L +VL  C+ L +  LGKQ+H     S + ++      L+ MY KCG +
Sbjct: 221 NEFGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMM 280

Query: 224 EDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC 283
           ++A  +F  +  KDVV+WNAM++GY+Q G+ E A+RLF+KM++E +K D +T+ A +   
Sbjct: 281 DEANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGY 340

Query: 284 NHAGL 288
              GL
Sbjct: 341 AQRGL 345



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 75/242 (30%), Positives = 113/242 (46%), Gaps = 19/242 (7%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVK--SVVAWTAMISGYMKFGYVENSWAEDGLKLLRM 162
           S +IS YI  G L  AV L +  P     V  W ++I  Y      +N  A   L L  +
Sbjct: 63  SHLISTYISVGCLSHAVSLLRRFPPSDAGVYHWNSLIRSYG-----DNGCANKCLYLFGL 117

Query: 163 MIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGD 222
           M  L   P+  +   V   C  +SS++ G+  H L   +    +      L++MY +C  
Sbjct: 118 MHSLSWTPDNYTFPFVFKACGEISSVRCGESAHALSLVTGFISNVFVGNALVAMYSRCRS 177

Query: 223 LEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE-GMKPDSITFVALLL 281
           L DA K+F E+   DVV+WN++I  YA+ GK + AL +F +M +E G +PD+IT V +L 
Sbjct: 178 LSDARKVFDEMSVWDVVSWNSIIESYAKLGKPKVALEMFSRMTNEFGCRPDNITLVNVLP 237

Query: 282 ACNHAGLVDLGIQYF-----DSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 336
            C   G   LG Q         M+ +  +        C+VD+  + G + EA  +   M 
Sbjct: 238 PCASLGTHSLGKQLHCFAVTSEMIQNMFVG------NCLVDMYAKCGMMDEANTVFSNMS 291

Query: 337 FK 338
            K
Sbjct: 292 VK 293



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 75/328 (22%), Positives = 136/328 (41%), Gaps = 55/328 (16%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIP--QPDVVSYNIMLSCILLNSDDVVAA---FDFF-- 62
           N ++  +AK + K+  A+ +FD +   + DVV++ +M+     + D   A     + F  
Sbjct: 411 NQLIDMYAKCK-KVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEE 469

Query: 63  --QRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSW---SAMISGYIECGQL 117
             Q  P   T S   +    +    + K    +    ++N+V     + +I  Y +CG +
Sbjct: 470 DCQTRPNAFTISCALVACASLAALRIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSI 529

Query: 118 DKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSS 177
             A  +F     K+ V WT++++GY   GY      E+ L +   M  +G + +  +L  
Sbjct: 530 SDARLVFDNMMAKNEVTWTSLMTGYGMHGY-----GEEALGIFDEMRRIGFKLDGVTLLV 584

Query: 178 VLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKD 237
           VL  CSH   +  G +    +      K    ++P        G    AC          
Sbjct: 585 VLYACSHSGMIDQGMEYFNRM------KTVFGVSP--------GPEHYAC---------- 620

Query: 238 VVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFD 297
                 ++    + G+   ALRL ++M    M+P  + +VA L  C   G V+LG +Y  
Sbjct: 621 ------LVDLLGRAGRLNAALRLIEEMP---MEPPPVVWVAFLSCCRIHGKVELG-EYAA 670

Query: 298 SMVNDYGIAAKPD-HYTCMVDLLGRAGK 324
             + +  +A+  D  YT + +L   AG+
Sbjct: 671 EKITE--LASNHDGSYTLLSNLYANAGR 696


>gi|145333528|ref|NP_001078414.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635630|sp|A8MQA3.2|PP330_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g21065
 gi|332658994|gb|AEE84394.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 595

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 211/532 (39%), Positives = 316/532 (59%), Gaps = 20/532 (3%)

Query: 26  AQELFDKIPQP-DVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKK 84
           A ++F KI +P +V  +N ++        + ++AF  ++ + +      +T    F+ K 
Sbjct: 72  AHKVFSKIEKPINVFIWNTLIRG-YAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKA 130

Query: 85  NMAKARDLFLAMPEKNSVSWS----------AMISGYIECGQLDKAVELFKVAPVKSVVA 134
               A D+ L     + V  S          +++  Y  CG +  A ++F   P K +VA
Sbjct: 131 VTTMA-DVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVA 189

Query: 135 WTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQV 194
           W ++I+G+      EN   E+ L L   M   GI+P+  ++ S+L  C+ + +L LGK+V
Sbjct: 190 WNSVINGF-----AENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRV 244

Query: 195 HQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKG 254
           H  + K  L ++  +   L+ +Y +CG +E+A  LF E+  K+ V+W ++I G A +G G
Sbjct: 245 HVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFG 304

Query: 255 EKALRLFDKMKD-EGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYT 313
           ++A+ LF  M+  EG+ P  ITFV +L AC+H G+V  G +YF  M  +Y I  + +H+ 
Sbjct: 305 KEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFG 364

Query: 314 CMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPA 373
           CMVDLL RAG++ +A + IK MP +P   I+ TLL AC VH   DLAEFA + +  L P 
Sbjct: 365 CMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLAEFARIQILQLEP- 423

Query: 374 NAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHP 433
           N +G YV L+N+YA+ ++W DV +IR  M  + V K+PG+S +EVG  VHEF  GD+ HP
Sbjct: 424 NHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEVGNRVHEFLMGDKSHP 483

Query: 434 ELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLG 493
           +  +I+ KLKE+  R++  GYVP +      V EE KE  +++HSEK+AIAF LI  P  
Sbjct: 484 QSDAIYAKLKEMTGRLRSEGYVPQISNVYVDVEEEEKENAVVYHSEKIAIAFMLISTPER 543

Query: 494 TPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           +PI V KNLRVC DCH A K +S +  REI+VRD +RFHHFK+G+CSC DYW
Sbjct: 544 SPITVVKNLRVCADCHLAIKLVSKVYNREIVVRDRSRFHHFKNGSCSCQDYW 595



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 68/133 (51%), Gaps = 10/133 (7%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  K  V WNSV+ GFA + GK ++A  L+ ++    +      +   LL++   + A  
Sbjct: 182 MPEKDLVAWNSVINGFA-ENGKPEEALALYTEMNSKGIKPDGFTIVS-LLSACAKIGALT 239

Query: 61  FFQRLPI--------KDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYI 112
             +R+ +        ++  S N ++  + +   + +A+ LF  M +KNSVSW+++I G  
Sbjct: 240 LGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLA 299

Query: 113 ECGQLDKAVELFK 125
             G   +A+ELFK
Sbjct: 300 VNGFGKEAIELFK 312


>gi|357124715|ref|XP_003564043.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Brachypodium distachyon]
          Length = 599

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 201/477 (42%), Positives = 284/477 (59%), Gaps = 9/477 (1%)

Query: 72  SWNTMISGFVQKKNMAKARDLFLAMPEKNS---VSWSAMISGYIECGQLDKAVELFKVAP 128
           S+N +++ ++       A  LF +         VSW+ M+ G    G +D A +LF   P
Sbjct: 129 SFNALLAAYLANGRADLASRLFGSCSSPGDLDVVSWTTMVGGLCRLGLVDDARKLFDGMP 188

Query: 129 VKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSL 188
            +++++W AMISGY+K G        D L++   M  LGI  N    +S ++ C+    L
Sbjct: 189 ERNLISWNAMISGYVKAGRFL-----DALEVFDQMRALGIEGNGFVAASAVVACTGAGVL 243

Query: 189 QLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGY 248
             G++VH+ V +S +  D    T ++ MYCKCG +E+A  +F  +  K + +WN MI G 
Sbjct: 244 ARGREVHRWVEQSGITMDEKLATAVVDMYCKCGSVEEAWHVFKVLPTKGLTSWNCMIGGL 303

Query: 249 AQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK 308
           A HG+ + A+ LF +M+ E + PD +T V +L AC H G+V  G  YF+ +V  YGI  K
Sbjct: 304 AVHGRCKDAIELFHEMEREDVAPDDVTLVNVLTACAHTGMVSDGHNYFNYIVQRYGIEPK 363

Query: 309 PDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLF 368
            +HY CMVDL GRAG L EA  +I  MP +P   + G L  AC++H+ LDL E     + 
Sbjct: 364 MEHYGCMVDLFGRAGLLDEAKKVIDDMPMEPDIGVLGALFGACKIHRDLDLGEAIGWRVI 423

Query: 369 NLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSG 428
            L+P N +G YV LAN+ A+  +W DVA++R  M E NV K  G S IE+   V EF+ G
Sbjct: 424 ELDPQN-SGRYVLLANLLASAGQWVDVAKVRRLMDERNVSKEAGRSVIEIDGEVCEFQCG 482

Query: 429 DRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLI 488
              H +   I   +K++ ++++L GY+PD    LH + EE KE  L +HSEKLAIAFGL+
Sbjct: 483 SLCHAQEKEIFAAVKDMMRKIRLEGYMPDTSDVLHDITEEEKEVPLQYHSEKLAIAFGLL 542

Query: 489 KVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           +   G  +R+ KNLRVC DCH ATK+IS + +REI+VRD  RFHHFKDGTCSC DYW
Sbjct: 543 RTRPGDTVRITKNLRVCRDCHEATKFISRVFEREIVVRDRNRFHHFKDGTCSCRDYW 599



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 95/216 (43%), Gaps = 43/216 (19%)

Query: 159 LLRMMIGLGIRPN-------------------------------ASSLSSVLL-----GC 182
            L +M+ L + P+                               A S +++L      G 
Sbjct: 83  FLALMLSLPLHPDHFTLPRLLPAAPLPLAAQLHALLLKLNFHSHAHSFNALLAAYLANGR 142

Query: 183 SHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWN 242
           + L+S   G         SP   D  + T ++   C+ G ++DA KLF  +  +++++WN
Sbjct: 143 ADLASRLFGS------CSSPGDLDVVSWTTMVGGLCRLGLVDDARKLFDGMPERNLISWN 196

Query: 243 AMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVND 302
           AMISGY + G+   AL +FD+M+  G++ +     + ++AC  AG++  G +     V  
Sbjct: 197 AMISGYVKAGRFLDALEVFDQMRALGIEGNGFVAASAVVACTGAGVLARG-REVHRWVEQ 255

Query: 303 YGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 338
            GI       T +VD+  + G + EA  + K +P K
Sbjct: 256 SGITMDEKLATAVVDMYCKCGSVEEAWHVFKVLPTK 291


>gi|413947864|gb|AFW80513.1| hypothetical protein ZEAMMB73_142876 [Zea mays]
          Length = 582

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 205/478 (42%), Positives = 283/478 (59%), Gaps = 38/478 (7%)

Query: 69  DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAP 128
           D +++NT+I+ + +   +A AR LF  MP +N+VSWSAM++GY++ G   +A+ +F    
Sbjct: 142 DASTFNTLITAYARAGRLADARALFDEMPARNAVSWSAMVNGYVQAGDGREALRIFA--- 198

Query: 129 VKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSL 188
                                   AED            +RP+ + L  VL  C+   +L
Sbjct: 199 ---------------------RMQAED------------VRPDDTVLVGVLAACAQHGAL 225

Query: 189 QLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGY 248
           + GK VH  +    +  +    T L+ MY KCG+++ A  +F  +Q K+V+ W  MI G 
Sbjct: 226 EQGKWVHGYLKAHGIKINLFFGTALVDMYSKCGEVQLAMDVFERMQYKNVLAWTTMIKGL 285

Query: 249 AQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK 308
           A HG+G +A+ LF +M+  G++PD I F+ +L AC HAGLVD G + FDSMV  YGI  K
Sbjct: 286 AMHGRGSEAVMLFAQMESSGIRPDDIAFIGVLCACTHAGLVDKGRELFDSMVRKYGIKPK 345

Query: 309 PDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLF 368
            +HY CMVDLL R G L EA ++I+KMP +P   I+G L++ CR HK ++ AE+ A +  
Sbjct: 346 IEHYGCMVDLLARNGFLYEAKEMIQKMPMEPDALIWGALMAGCRFHKNVEFAEYVAKHWI 405

Query: 369 NLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSG 428
            L P + +G YV L+NIYAA  +      IR  M+E  V K PG S +EV  V+H+F  G
Sbjct: 406 LLEP-DKSGAYVLLSNIYAASGRHASAREIRHLMREKGVDKTPGCSTVEVNGVIHQFIVG 464

Query: 429 DRVHPELVSIHEKLKELEKRMKL-AGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGL 487
           D  HP +  I  K  E++ R++L  GY+PD++  L  + EE KE  L  HSEKLAIAF L
Sbjct: 465 DLSHPRIKDILSKWYEIDTRIRLEEGYIPDMKEVLLDIEEEEKEGALSRHSEKLAIAFAL 524

Query: 488 IKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           I +    PIR+FKNLRVC DCH  TK IS +  REI+VRD TRFH FK+GTCSC DYW
Sbjct: 525 ISISDNMPIRIFKNLRVCHDCHHVTKLISKVYGREIVVRDRTRFHLFKEGTCSCKDYW 582



 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 58/195 (29%), Positives = 102/195 (52%), Gaps = 4/195 (2%)

Query: 197 LVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEK 256
           L+ ++    D +    LI+ Y + G L DA  LF E+  ++ V+W+AM++GY Q G G +
Sbjct: 133 LLLRTAAAVDASTFNTLITAYARAGRLADARALFDEMPARNAVSWSAMVNGYVQAGDGRE 192

Query: 257 ALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMV 316
           ALR+F +M+ E ++PD    V +L AC   G ++ G ++    +  +GI       T +V
Sbjct: 193 ALRIFARMQAEDVRPDDTVLVGVLAACAQHGALEQG-KWVHGYLKAHGIKINLFFGTALV 251

Query: 317 DLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAE--FAAMNLFNLNPAN 374
           D+  + G++  A+D+ ++M +K   A + T++    +H R   A   FA M    + P +
Sbjct: 252 DMYSKCGEVQLAMDVFERMQYKNVLA-WTTMIKGLAMHGRGSEAVMLFAQMESSGIRPDD 310

Query: 375 AAGCYVQLANIYAAM 389
            A   V  A  +A +
Sbjct: 311 IAFIGVLCACTHAGL 325



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 61/287 (21%), Positives = 115/287 (40%), Gaps = 50/287 (17%)

Query: 12  VLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTA 71
           V AGF    G L D   L       D  ++N +++     +  +  A   F  +P ++  
Sbjct: 120 VHAGFL---GSLADGLLLLRTAAAVDASTFNTLITA-YARAGRLADARALFDEMPARNAV 175

Query: 72  SWNTMISGFVQKKNMAKARDLFLAMPEK-------------------------------- 99
           SW+ M++G+VQ  +  +A  +F  M  +                                
Sbjct: 176 SWSAMVNGYVQAGDGREALRIFARMQAEDVRPDDTVLVGVLAACAQHGALEQGKWVHGYL 235

Query: 100 -------NSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSW 152
                  N    +A++  Y +CG++  A+++F+    K+V+AWT MI G    G      
Sbjct: 236 KAHGIKINLFFGTALVDMYSKCGEVQLAMDVFERMQYKNVLAWTTMIKGLAMHGR----- 290

Query: 153 AEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQV-HQLVFKSPLCKDTTALT 211
             + + L   M   GIRP+  +   VL  C+H   +  G+++   +V K  +        
Sbjct: 291 GSEAVMLFAQMESSGIRPDDIAFIGVLCACTHAGLVDKGRELFDSMVRKYGIKPKIEHYG 350

Query: 212 PLISMYCKCGDLEDACKLFLEI-QRKDVVTWNAMISGYAQHGKGEKA 257
            ++ +  + G L +A ++  ++    D + W A+++G   H   E A
Sbjct: 351 CMVDLLARNGFLYEAKEMIQKMPMEPDALIWGALMAGCRFHKNVEFA 397



 Score = 40.0 bits (92), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 44/238 (18%), Positives = 92/238 (38%), Gaps = 50/238 (21%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDV---------------------- 38
           M  +  V+W++++ G+  Q G  ++A  +F ++   DV                      
Sbjct: 169 MPARNAVSWSAMVNGYV-QAGDGREALRIFARMQAEDVRPDDTVLVGVLAACAQHGALEQ 227

Query: 39  ------------VSYNIMLSCILLN----SDDVVAAFDFFQRLPIKDTASWNTMISGFVQ 82
                       +  N+     L++      +V  A D F+R+  K+  +W TMI G   
Sbjct: 228 GKWVHGYLKAHGIKINLFFGTALVDMYSKCGEVQLAMDVFERMQYKNVLAWTTMIKGLAM 287

Query: 83  KKNMAKARDLFLAMPEK----NSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAM 138
               ++A  LF  M       + +++  ++      G +DK  ELF      S+V    +
Sbjct: 288 HGRGSEAVMLFAQMESSGIRPDDIAFIGVLCACTHAGLVDKGRELF-----DSMVRKYGI 342

Query: 139 ISGYMKFGYVENSWAEDGL--KLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQV 194
                 +G + +  A +G   +   M+  + + P+A    +++ GC    +++  + V
Sbjct: 343 KPKIEHYGCMVDLLARNGFLYEAKEMIQKMPMEPDALIWGALMAGCRFHKNVEFAEYV 400


>gi|147856409|emb|CAN80331.1| hypothetical protein VITISV_018275 [Vitis vinifera]
          Length = 681

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 208/532 (39%), Positives = 307/532 (57%), Gaps = 49/532 (9%)

Query: 57  AAFD---FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKN------------- 100
           A FD    F+ +P KD  SW  MI G+ +     +A   F  M ++              
Sbjct: 156 AMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLG 215

Query: 101 ------------SVSWS--------------AMISGYIECGQLDKAVELFKV-APVKSVV 133
                       SV  S              A+   Y + G ++ A  +F + +  ++VV
Sbjct: 216 ACGALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVV 275

Query: 134 AWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ 193
           ++T +I GY     VE    E GL +   +   GI PN  + SS++  C++ ++L+ G Q
Sbjct: 276 SYTCLIDGY-----VETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQ 330

Query: 194 VHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGK 253
           +H  V K    +D    + L+ MY KCG LE A + F EI     + WN+++S + QHG 
Sbjct: 331 LHAQVMKINFDEDPFVSSILVDMYGKCGLLEHAIQAFDEIGDPTEIAWNSLVSVFGQHGL 390

Query: 254 GEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYT 313
           G+ A++ F++M D G+KP++ITF++LL  C+HAGLV+ G+ YF SM   YG+    +HY+
Sbjct: 391 GKDAIKFFERMVDRGVKPNAITFISLLTGCSHAGLVEEGLDYFYSMDKTYGVVPGEEHYS 450

Query: 314 CMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPA 373
           C++DLLGRAG+L EA + I +MPF+P    + + L ACR+H   ++ + AA  L  L P 
Sbjct: 451 CVIDLLGRAGRLKEAKEFINRMPFEPNAFGWCSFLGACRIHGDKEMGKLAAEKLVKLEPK 510

Query: 374 NAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHP 433
           N +G  V L+NIYA  ++W+DV  +R+ M++ NV K+PGYSW++VG   H F + D  H 
Sbjct: 511 N-SGALVLLSNIYANERQWEDVRSVRMRMRDGNVKKLPGYSWVDVGYKTHVFGAEDWSHX 569

Query: 434 ELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLG 493
              +I+EKL  L  ++K AGYVP  +     + + +KE+LL  HSE++A+AF LI +P+G
Sbjct: 570 RKSAIYEKLDXLLDQIKAAGYVPXTDSVPLDMDDXMKEKLLHRHSERIAVAFALISMPIG 629

Query: 494 TPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
            PI V KNLRVC DCH A K+IS +  R+IIVRD +RFHHF DG+CSCGDYW
Sbjct: 630 KPIIVKKNLRVCVDCHSAIKFISKVTGRKIIVRDNSRFHHFTDGSCSCGDYW 681



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 90/323 (27%), Positives = 157/323 (48%), Gaps = 43/323 (13%)

Query: 67  IKDTASWNTMISGFVQKKNMAKARDL----FLAMPEKNSVSWSAMISGYIECGQLDKAVE 122
           ++DT +   +I  + + K + + + L      A     +   + +++ Y +CG+LD A++
Sbjct: 2   LRDTNALAHVIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALK 61

Query: 123 LFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGC 182
           LF   P +++V+WTAMISG       +NS   + ++    M   G  P   + SS +  C
Sbjct: 62  LFDTMPQRNLVSWTAMISGLS-----QNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRAC 116

Query: 183 SHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWN 242
           + L S+++GKQ+H L  K  +  +    + L  MY KCG + DACK+F E+  KD V+W 
Sbjct: 117 ASLGSIEMGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWT 176

Query: 243 AMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN-----------HAGLVDL 291
           AMI GY++ G+ E+AL  F KM DE +  D     + L AC            H+ +V L
Sbjct: 177 AMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKL 236

Query: 292 GIQY-----------------FDSMVNDYGIAAKPDH---YTCMVDLLGRAGKLVEAVDL 331
           G +                   +S  N +GI ++  +   YTC++D      ++ + + +
Sbjct: 237 GFESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSV 296

Query: 332 ---IKKMPFKPQPAIFGTLLSAC 351
              +++   +P    F +L+ AC
Sbjct: 297 FVELRRQGIEPNEFTFSSLIKAC 319


>gi|357498701|ref|XP_003619639.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494654|gb|AES75857.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1182

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 217/568 (38%), Positives = 320/568 (56%), Gaps = 51/568 (8%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASW------- 73
             L  A +LFD+IPQPD+  YN M+    ++    + +   F+ L I+D+  +       
Sbjct: 224 ASLTYAHKLFDQIPQPDLFIYNTMIKSHSMSPHSYLDSIAVFRSL-IRDSGYFPNRYSFV 282

Query: 74  ----------------------------------NTMISGFVQKKNMAKARDLFLAMPEK 99
                                             N +I  F +   +  AR++F +  ++
Sbjct: 283 FAFGACGNGMCVREGEQVFTHAVKVGLDGNVFVVNALIGMFGKWGRVEDARNVFDSAVDR 342

Query: 100 NSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKL 159
           +  SW+ MI  Y+  G +  A ELF     + VV+W+ +I+GY++ G        + L  
Sbjct: 343 DFYSWNTMIGAYVGSGNMVLAKELFDEMHERDVVSWSTIIAGYVQVGCFM-----EALDF 397

Query: 160 LRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCK 219
              M+   ++PN  ++ S L  CS+L +L  GK +H  + +  +  +   L  LI MY K
Sbjct: 398 FHKMLQSEVKPNEYTMVSALAACSNLVALDQGKWIHVYIRRDNIKMNDRLLASLIDMYAK 457

Query: 220 CGDLEDACKLFLEIQ-RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVA 278
           CG+++ A  +F E + ++ V  WNAMI G+A HGK E+A+ +F+KMK E + P+ +TF+A
Sbjct: 458 CGEIDSASSVFHEHKVKRKVWPWNAMIGGFAMHGKPEEAINVFEKMKVEKVSPNKVTFIA 517

Query: 279 LLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 338
           LL AC+H  +V  G  YF+ M +DYGI  + +HY CMVDLL R+G L ++ ++I  MP  
Sbjct: 518 LLNACSHGYMVKEGKSYFELMASDYGINPEIEHYGCMVDLLSRSGHLKDSEEMILSMPMA 577

Query: 339 PQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARI 398
           P  AI+G LL+ACR++K ++        +  ++P N  GC V L NIY+   +W++   +
Sbjct: 578 PDVAIWGALLNACRIYKDMERGYRIGRIIKEIDP-NHIGCNVLLGNIYSTSGRWNEARMV 636

Query: 399 RLSMKEN-NVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPD 457
           R   + N +  K+PG+S IE+  V HEF  GDR HP+   I+  L E+  ++K+AGYVP+
Sbjct: 637 REKNEINSDRKKIPGFSSIELNGVFHEFLVGDRSHPQSREIYSFLDEMISKLKIAGYVPE 696

Query: 458 L-EFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYIS 516
           L E  L    EE KE  L  HSEKLAIAFGL+    GTPIR+ KNLRVCGDCH+ATK+IS
Sbjct: 697 LGEVLLDFDDEEDKETALSVHSEKLAIAFGLMNTAPGTPIRIVKNLRVCGDCHQATKFIS 756

Query: 517 AIEKREIIVRDTTRFHHFKDGTCSCGDY 544
            +  R IIVRD  R+HHFKDG CSC DY
Sbjct: 757 KVYDRVIIVRDRMRYHHFKDGICSCKDY 784



 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 75/316 (23%), Positives = 138/316 (43%), Gaps = 57/316 (18%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
           N+++  F K  G+++DA+ +FD     D  S+N M+    + S ++V A + F  +  +D
Sbjct: 317 NALIGMFGKW-GRVEDARNVFDSAVDRDFYSWNTMIGA-YVGSGNMVLAKELFDEMHERD 374

Query: 70  TASWNTMISGFVQKKNMAKARDLFLAM------PEKNSV----------------SW--- 104
             SW+T+I+G+VQ     +A D F  M      P + ++                 W   
Sbjct: 375 VVSWSTIIAGYVQVGCFMEALDFFHKMLQSEVKPNEYTMVSALAACSNLVALDQGKWIHV 434

Query: 105 --------------SAMISGYIECGQLDKAVELFKVAPVK-SVVAWTAMISGYMKFGYVE 149
                         +++I  Y +CG++D A  +F    VK  V  W AMI G+   G   
Sbjct: 435 YIRRDNIKMNDRLLASLIDMYAKCGEIDSASSVFHEHKVKRKVWPWNAMIGGFAMHGK-- 492

Query: 150 NSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK----SPLCK 205
               E+ + +   M    + PN  +  ++L  CSH   ++ GK   +L+      +P  +
Sbjct: 493 ---PEEAINVFEKMKVEKVSPNKVTFIALLNACSHGYMVKEGKSYFELMASDYGINPEIE 549

Query: 206 DTTALTPLISMYCKCGDLEDACKLFLEI-QRKDVVTWNAMISGYAQHGKGEKALRLFDKM 264
               +  L+S   + G L+D+ ++ L +    DV  W A+++    +   E+  R+   +
Sbjct: 550 HYGCMVDLLS---RSGHLKDSEEMILSMPMAPDVAIWGALLNACRIYKDMERGYRIGRII 606

Query: 265 KDEGMKPDSITFVALL 280
           K+  + P+ I    LL
Sbjct: 607 KE--IDPNHIGCNVLL 620


>gi|449450646|ref|XP_004143073.1| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Cucumis sativus]
          Length = 610

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 212/537 (39%), Positives = 309/537 (57%), Gaps = 26/537 (4%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLS----CILLNSDDVVAAFDFFQRLPIK-DTASWNT 75
           G  +DA +LFD +P  D+VS+N ++S    C+ ++   + A +     + +K +  +  +
Sbjct: 88  GYAEDALKLFDDMPHKDLVSWNSLISGFSRCLHMS---LTAFYTMKFEMSVKPNEVTILS 144

Query: 76  MISGFVQKKNMAKARDLF-------LAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAP 128
           MIS      +  K    F       L +   NS     +I+ Y + G L  A  LF+  P
Sbjct: 145 MISACSGALDAGKYIHGFGIKVGGTLEVKVANS-----LINMYGKSGDLTSACRLFEAIP 199

Query: 129 VKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSL 188
             + V+W ++I+       V N  A +G+     M  LGI  +  ++ ++L  C HL   
Sbjct: 200 DPNTVSWNSIIAAQ-----VTNGCAREGIDYFNKMRRLGIEQDEGTILALLQACLHLGVG 254

Query: 189 QLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGY 248
           +L + +H L+F +      T  T L+  Y K G L  +  +F E+   D V W AM++GY
Sbjct: 255 KLAESIHGLMFCTGFGAKITIATALLDTYAKLGRLSASYGVFTEVGFADRVAWTAMLAGY 314

Query: 249 AQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK 308
           A HG G +A++LF+ M ++G++PD +TF  LL AC+H+GLV+ G  YF+ M   YGI  +
Sbjct: 315 AAHGLGREAIKLFESMANKGLEPDHVTFTHLLSACSHSGLVNEGKSYFNVMSEVYGIEPR 374

Query: 309 PDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLF 368
            DHY+CMVDLLGR G L +A ++I+ MP +P   ++G LL ACRVH  ++L +  A +L 
Sbjct: 375 VDHYSCMVDLLGRCGLLNDAYEVIQNMPMEPNAGVWGALLGACRVHGNIELGKEVAEHLI 434

Query: 369 NLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSG 428
           N+ P +    Y+ L+N+Y+A + W D A++R  +KE  + + PGYS IE G   H F  G
Sbjct: 435 NMEPLDPRN-YIMLSNMYSASRSWKDAAKVRALLKERGLKRTPGYSSIEYGNKNHHFFVG 493

Query: 429 DRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLI 488
           DR HPE   I+ KL+EL  +++ AGY    E+ L  V EEVKE ++  HSEKLAIAFGL+
Sbjct: 494 DRSHPETEKIYSKLEELLGKIRKAGYSSKTEYVLQDVEEEVKEDMINKHSEKLAIAFGLL 553

Query: 489 KVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
               G  + + KNLR+CGDCH   K IS IEKR II+RD  RFHHF DG CSC DYW
Sbjct: 554 VSKEGEALIITKNLRICGDCHSTAKLISLIEKRTIIIRDPKRFHHFSDGFCSCADYW 610



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 64/236 (27%), Positives = 118/236 (50%), Gaps = 9/236 (3%)

Query: 107 MISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGL 166
           +++ Y + G  + A++LF   P K +V+W ++ISG+ +  ++  +          M   +
Sbjct: 80  LVTCYNKLGYAEDALKLFDDMPHKDLVSWNSLISGFSRCLHMSLT------AFYTMKFEM 133

Query: 167 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 226
            ++PN  ++ S++  CS   +L  GK +H    K     +      LI+MY K GDL  A
Sbjct: 134 SVKPNEVTILSMISACS--GALDAGKYIHGFGIKVGGTLEVKVANSLINMYGKSGDLTSA 191

Query: 227 CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHA 286
           C+LF  I   + V+WN++I+    +G   + +  F+KM+  G++ D  T +ALL AC H 
Sbjct: 192 CRLFEAIPDPNTVSWNSIIAAQVTNGCAREGIDYFNKMRRLGIEQDEGTILALLQACLHL 251

Query: 287 GLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPA 342
           G+  L  +    ++   G  AK    T ++D   + G+L  +  +  ++ F  + A
Sbjct: 252 GVGKLA-ESIHGLMFCTGFGAKITIATALLDTYAKLGRLSASYGVFTEVGFADRVA 306



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 52/179 (29%), Positives = 98/179 (54%), Gaps = 11/179 (6%)

Query: 175 LSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ 234
           +S++L+  +   S+   +++H  VFKS L +D      L++ Y K G  EDA KLF ++ 
Sbjct: 42  VSALLIAVNSCPSISNCREIHARVFKSLLYRDGFIGDQLVTCYNKLGYAEDALKLFDDMP 101

Query: 235 RKDVVTWNAMISGYAQ--HGKGEKALRLFDKMKDE-GMKPDSITFVALLLACNHAGLVDL 291
            KD+V+WN++ISG+++  H     +L  F  MK E  +KP+ +T ++++ AC  +G +D 
Sbjct: 102 HKDLVSWNSLISGFSRCLH----MSLTAFYTMKFEMSVKPNEVTILSMISAC--SGALDA 155

Query: 292 GIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSA 350
           G +Y        G   +      ++++ G++G L  A  L + +P  P    + ++++A
Sbjct: 156 G-KYIHGFGIKVGGTLEVKVANSLINMYGKSGDLTSACRLFEAIP-DPNTVSWNSIIAA 212


>gi|356542389|ref|XP_003539649.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Glycine max]
          Length = 676

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 222/555 (40%), Positives = 308/555 (55%), Gaps = 19/555 (3%)

Query: 3   VKTTVNWN----SVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAA 58
           +KT  +W+    + L     + G L DA+++FD+IP+ +VVS+  ++ C  + S     A
Sbjct: 129 IKTGFDWDVFVKTGLVCLYSKNGFLTDARKVFDEIPEKNVVSWTAII-CGYIESGCFGEA 187

Query: 59  FDFFQRLP----IKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVS----WSAMISG 110
              F+ L       D+ +   ++    +  ++A  R +   M E  SV      ++++  
Sbjct: 188 LGLFRGLLEMGLRPDSFTLVRILYACSRVGDLASGRWIDGYMRESGSVGNVFVATSLVDM 247

Query: 111 YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRP 170
           Y +CG +++A  +F     K VV W+A+I GY       N   ++ L +   M    +RP
Sbjct: 248 YAKCGSMEEARRVFDGMVEKDVVCWSALIQGY-----ASNGMPKEALDVFFEMQRENVRP 302

Query: 171 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 230
           +  ++  V   CS L +L+LG     L+       +    T LI  Y KCG +  A ++F
Sbjct: 303 DCYAMVGVFSACSRLGALELGNWARGLMDGDEFLSNPVLGTALIDFYAKCGSVAQAKEVF 362

Query: 231 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVD 290
             ++RKD V +NA+ISG A  G    A  +F +M   GM+PD  TFV LL  C HAGLVD
Sbjct: 363 KGMRRKDCVVFNAVISGLAMCGHVGAAFGVFGQMVKVGMQPDGNTFVGLLCGCTHAGLVD 422

Query: 291 LGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSA 350
            G +YF  M + + +    +HY CMVDL  RAG LVEA DLI+ MP +    ++G LL  
Sbjct: 423 DGHRYFSGMSSVFSVTPTIEHYGCMVDLQARAGLLVEAQDLIRSMPMEANSIVWGALLGG 482

Query: 351 CRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKM 410
           CR+HK   LAE     L  L P N+ G YV L+NIY+A  +WD+  +IR S+ +  + K+
Sbjct: 483 CRLHKDTQLAEHVLKQLIELEPWNS-GHYVLLSNIYSASHRWDEAEKIRSSLNQKGMQKL 541

Query: 411 PGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVK 470
           PG SW+EV  VVHEF  GD  HP    I+EKL+ L K ++ AGY P  EF L  V EE K
Sbjct: 542 PGCSWVEVDGVVHEFLVGDTSHPLSHKIYEKLESLFKDLREAGYNPTTEFVLFDVEEEEK 601

Query: 471 EQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTR 530
           E  L  HSEKLA+AF LI       IRV KNLRVCGDCH A K +S +  REIIVRD  R
Sbjct: 602 EYFLGCHSEKLAVAFALISTGAKDVIRVVKNLRVCGDCHEAIKLVSKVTGREIIVRDNNR 661

Query: 531 FHHFKDGTCSCGDYW 545
           FHHF +G+CSC DYW
Sbjct: 662 FHHFTEGSCSCRDYW 676



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/217 (30%), Positives = 103/217 (47%), Gaps = 7/217 (3%)

Query: 120 AVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVL 179
           A  +F   P  ++  +  +I G      V N    D + +   M   G  P+  +   VL
Sbjct: 54  ATVVFAQTPHPNIFLYNTLIRGM-----VSNDAFRDAVSVYASMRQHGFAPDNFTFPFVL 108

Query: 180 LGCSHLSS-LQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDV 238
             C+ L     +G  +H LV K+    D    T L+ +Y K G L DA K+F EI  K+V
Sbjct: 109 KACTRLPHYFHVGLSLHSLVIKTGFDWDVFVKTGLVCLYSKNGFLTDARKVFDEIPEKNV 168

Query: 239 VTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDS 298
           V+W A+I GY + G   +AL LF  + + G++PDS T V +L AC+  G +  G ++ D 
Sbjct: 169 VSWTAIICGYIESGCFGEALGLFRGLLEMGLRPDSFTLVRILYACSRVGDLASG-RWIDG 227

Query: 299 MVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335
            + + G        T +VD+  + G + EA  +   M
Sbjct: 228 YMRESGSVGNVFVATSLVDMYAKCGSMEEARRVFDGM 264



 Score = 47.8 bits (112), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 71/177 (40%), Gaps = 16/177 (9%)

Query: 185 LSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAM 244
           L SL   KQ H L+ +  L +DT  +  L+         + A  +F +    ++  +N +
Sbjct: 13  LKSLHQAKQCHCLLLRLGLHQDTYLINLLLRSSLHFAATQYATVVFAQTPHPNIFLYNTL 72

Query: 245 ISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN------HAGLVDLGIQYFDS 298
           I G   +     A+ ++  M+  G  PD+ TF  +L AC       H GL         S
Sbjct: 73  IRGMVSNDAFRDAVSVYASMRQHGFAPDNFTFPFVLKACTRLPHYFHVGLS------LHS 126

Query: 299 MVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKP----QPAIFGTLLSAC 351
           +V   G        T +V L  + G L +A  +  ++P K        I G + S C
Sbjct: 127 LVIKTGFDWDVFVKTGLVCLYSKNGFLTDARKVFDEIPEKNVVSWTAIICGYIESGC 183


>gi|297737088|emb|CBI26289.3| unnamed protein product [Vitis vinifera]
          Length = 668

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 208/489 (42%), Positives = 294/489 (60%), Gaps = 14/489 (2%)

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAV 121
           F+ +  ++  SW ++I G+ +     +A  LF  M   N V  +A++  Y++CG +D A 
Sbjct: 189 FEGMSERNVVSWTSLICGYARGDRPKEAVSLFFEM--LNKVMVNALVDMYMKCGAIDAAK 246

Query: 122 ELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLG 181
            LF     +++V +  ++S Y + G      A + L +L  M+  G RP+  ++ S +  
Sbjct: 247 RLFDECVDRNLVLYNTILSNYARQG-----LAREALAILDEMLQQGPRPDRVTMLSAISA 301

Query: 182 CSHLSSLQLGKQ-----VHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK 236
            + L  L  GK      VH  + K+ +  D    T L+ M+ +CGD + A ++F ++  +
Sbjct: 302 SAQLVDLFYGKVCHGYWVHTYIEKNGIPCDMRLNTALVDMFARCGDPQSAMQVFNKMTER 361

Query: 237 DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYF 296
           DV  W A I   A  G GE A  LF++M  +G+KPD + FV +L AC+H G V+ G+  F
Sbjct: 362 DVSAWTAAIGTMAMEGNGEGATGLFNQMLIQGVKPDVVLFVQVLTACSHGGQVEQGLHIF 421

Query: 297 DSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKR 356
            S++ D+GI+ + +HY CMVDLLGRAG L EA DLIK MP +P   ++G+LL+ACRVHK 
Sbjct: 422 -SLMEDHGISPQIEHYGCMVDLLGRAGLLREAFDLIKSMPMEPNDVVWGSLLAACRVHKN 480

Query: 357 LDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWI 416
           +++A +AA  +  L P  A G +V L+NIYA+  KW DVAR+RL+++E  V K+PG S +
Sbjct: 481 VEMATYAAERINELAPQRA-GVHVLLSNIYASAGKWTDVARVRLNLREKGVRKVPGSSSV 539

Query: 417 EVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLF 476
           +V  V+HEF SGD  HPE+  I   L+E+  R   AG++PDL   L  V E+ KE LL  
Sbjct: 540 QVNGVIHEFTSGDESHPEMTHIALMLQEMNCRFSDAGHIPDLSNVLLDVDEQEKEYLLSR 599

Query: 477 HSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKD 536
           HSEKLAIAFGLI      PIRV KNLR+C DCH   K  S I  REIIVRD  RFH F+ 
Sbjct: 600 HSEKLAIAFGLIATGRSMPIRVVKNLRMCSDCHSFAKMASIIYNREIIVRDNNRFHFFRQ 659

Query: 537 GTCSCGDYW 545
           G CSC DYW
Sbjct: 660 GLCSCCDYW 668



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 68/242 (28%), Positives = 116/242 (47%), Gaps = 20/242 (8%)

Query: 119 KAVELFK--VAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLS 176
           KA ELFK  V    ++    ++I GY   G        + + L   M+ LG+ PN  +  
Sbjct: 81  KAFELFKEDVRSDDALFMLNSLIRGYSSAG-----LGREAILLYVRMLVLGVTPNHYTFP 135

Query: 177 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK 236
            VL GC+ +++   G QVH  V K  L +D      LI  Y +CG ++   K+F  +  +
Sbjct: 136 FVLSGCTKIAAFCEGIQVHGSVVKMGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSER 195

Query: 237 DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYF 296
           +VV+W ++I GYA+  + ++A+ LF +M ++ M       V + + C   G +D   + F
Sbjct: 196 NVVSWTSLICGYARGDRPKEAVSLFFEMLNKVMVN---ALVDMYMKC---GAIDAAKRLF 249

Query: 297 DSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK-PQPAIFGTLLSACRVHK 355
           D  V+   +      Y  ++    R G   EA+ ++ +M  + P+P    T+LSA     
Sbjct: 250 DECVDRNLVL-----YNTILSNYARQGLAREALAILDEMLQQGPRPDRV-TMLSAISASA 303

Query: 356 RL 357
           +L
Sbjct: 304 QL 305



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 65/314 (20%), Positives = 120/314 (38%), Gaps = 60/314 (19%)

Query: 1   MNVKTTVNWNSVLAGFAK----------------------------QRGKLKDAQELFDK 32
           M+ +  V+W S++ G+A+                            + G +  A+ LFD+
Sbjct: 192 MSERNVVSWTSLICGYARGDRPKEAVSLFFEMLNKVMVNALVDMYMKCGAIDAAKRLFDE 251

Query: 33  IPQPDVVSYNIMLSCILLN--SDDVVAAFD-FFQRLPIKDTASWNTMISGFVQKKNMAKA 89
               ++V YN +LS       + + +A  D   Q+ P  D  +  + IS        A+ 
Sbjct: 252 CVDRNLVLYNTILSNYARQGLAREALAILDEMLQQGPRPDRVTMLSAISA------SAQL 305

Query: 90  RDLFLA----------MPEKNSVSW-----SAMISGYIECGQLDKAVELFKVAPVKSVVA 134
            DLF              EKN +       +A++  +  CG    A+++F     + V A
Sbjct: 306 VDLFYGKVCHGYWVHTYIEKNGIPCDMRLNTALVDMFARCGDPQSAMQVFNKMTERDVSA 365

Query: 135 WTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQV 194
           WTA I      G       E    L   M+  G++P+      VL  CSH   ++ G  +
Sbjct: 366 WTAAIGTMAMEGN-----GEGATGLFNQMLIQGVKPDVVLFVQVLTACSHGGQVEQGLHI 420

Query: 195 HQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF--LEIQRKDVVTWNAMISGYAQHG 252
             L+    +         ++ +  + G L +A  L   + ++  DVV W ++++    H 
Sbjct: 421 FSLMEDHGISPQIEHYGCMVDLLGRAGLLREAFDLIKSMPMEPNDVV-WGSLLAACRVHK 479

Query: 253 KGEKALRLFDKMKD 266
             E A    +++ +
Sbjct: 480 NVEMATYAAERINE 493


>gi|449525261|ref|XP_004169636.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Cucumis sativus]
          Length = 650

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 205/548 (37%), Positives = 320/548 (58%), Gaps = 18/548 (3%)

Query: 9   WNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCIL------LNSD--DVVAAFD 60
           W +++ G+A Q G L ++   + ++ +  V   +   S +       LN D    V A  
Sbjct: 110 WTAMIRGYALQ-GLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGKQVHAQT 168

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
                   D    N+MI  +V+   +  AR +F  M E++ VSW+ +I  Y + G ++ A
Sbjct: 169 ILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKYGDMESA 228

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLL 180
             LF   P K +VAWTAM++GY      +N   ++ L+  + M  +G+  +  +L+ V+ 
Sbjct: 229 SGLFDDLPSKDMVAWTAMVTGY-----AQNGRPKEALEYFQKMQDVGMETDEVTLAGVIS 283

Query: 181 GCSHLSSLQLGKQVHQLVFKSPLCKDTTAL--TPLISMYCKCGDLEDACKLFLEIQRKDV 238
            C+ L +++    +  +  +S        +  + LI MY KCG  ++A K+F  ++ ++V
Sbjct: 284 ACAQLGAVKHANWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERNV 343

Query: 239 VTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDS 298
            ++++MI GYA HG+   AL+LF  M    ++P+ +TF+ +L AC+HAGLV+ G Q F  
Sbjct: 344 FSYSSMILGYAMHGRAHSALQLFHDMLKTEIRPNKVTFIGILSACSHAGLVEQGRQLFAK 403

Query: 299 MVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLD 358
           M   +G+A  PDHY CMVDLLGRAG L EA+DL+K MP +P   ++G LL ACR+H   D
Sbjct: 404 MEKFFGVAPSPDHYACMVDLLGRAGCLEEALDLVKTMPMEPNGGVWGALLGACRIHGNPD 463

Query: 359 LAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIE- 417
           +A+ AA  LF L P N  G Y+ L+NIYA+  +W++V+++R  ++E    K PG SW E 
Sbjct: 464 IAQIAANELFKLEP-NGIGNYILLSNIYASAGRWEEVSKLRKVIREKGFKKNPGCSWFEG 522

Query: 418 VGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFH 477
               +H+F +GD  HP    I + LK+L +R++  GY P+L  A + + ++ KE++L+ H
Sbjct: 523 KNGEIHDFFAGDTTHPRSSEIRQALKQLIERLRSHGYKPNLGSAPYDLTDDEKERILMSH 582

Query: 478 SEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDG 537
           SEKLA+A+GL+    G  I++ KN+R+C DCH      S I  REIIVRD  RFHHF +G
Sbjct: 583 SEKLALAYGLLCTEAGDTIKIMKNIRICEDCHNVMCAASEITGREIIVRDNMRFHHFHNG 642

Query: 538 TCSCGDYW 545
           TCSCG++W
Sbjct: 643 TCSCGNFW 650



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 92/339 (27%), Positives = 137/339 (40%), Gaps = 75/339 (22%)

Query: 100 NSVSWSAMISGYIECGQLDKAVELFK------VAPV--------------------KSVV 133
           N   W+AMI GY   G L ++   +       V PV                    K V 
Sbjct: 106 NPFLWTAMIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGKQVH 165

Query: 134 AWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ 193
           A T +I G+    YV NS           MI L ++          LGC+          
Sbjct: 166 AQTILIGGFASDLYVGNS-----------MIDLYVKCG-------FLGCA---------- 197

Query: 194 VHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGK 253
             + VF     +D  + T LI  Y K GD+E A  LF ++  KD+V W AM++GYAQ+G+
Sbjct: 198 --RKVFDEMSERDVVSWTELIVAYAKYGDMESASGLFDDLPSKDMVAWTAMVTGYAQNGR 255

Query: 254 GEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFD-SMVNDYGIAAKPDHY 312
            ++AL  F KM+D GM+ D +T   ++ AC   G V       D +  + +G +      
Sbjct: 256 PKEALEYFQKMQDVGMETDEVTLAGVISACAQLGAVKHANWIRDIAERSGFGPSGNVVVG 315

Query: 313 TCMVDLLGRAGKLVEAVDLIKKMP----FKPQPAIFGTLLSACRVHKRLDLAEFAAMNLF 368
           + ++D+  + G   EA  + + M     F     I G  +   R H  L L  F  M   
Sbjct: 316 SALIDMYSKCGSPDEAYKVFEVMKERNVFSYSSMILGYAMHG-RAHSALQL--FHDMLKT 372

Query: 369 NLNP-----------ANAAGCYVQLANIYAAMKKWDDVA 396
            + P            + AG   Q   ++A M+K+  VA
Sbjct: 373 EIRPNKVTFIGILSACSHAGLVEQGRQLFAKMEKFFGVA 411



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 76/163 (46%), Gaps = 5/163 (3%)

Query: 175 LSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL--FLE 232
           L S+L  C+  S +   KQVH  + ++ L + +  LT LI M  K      +  L  F +
Sbjct: 45  LMSILHDCTLFSQI---KQVHAHIIRNGLSQCSYVLTKLIRMLTKVDVPMGSYPLLVFGQ 101

Query: 233 IQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 292
           +   +   W AMI GYA  G   ++   + +M+ +G+ P S TF AL  AC  A  +DLG
Sbjct: 102 VNYPNPFLWTAMIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLG 161

Query: 293 IQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335
            Q     +   G A+       M+DL  + G L  A  +  +M
Sbjct: 162 KQVHAQTILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEM 204


>gi|224082698|ref|XP_002306801.1| predicted protein [Populus trichocarpa]
 gi|222856250|gb|EEE93797.1| predicted protein [Populus trichocarpa]
          Length = 787

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 226/622 (36%), Positives = 331/622 (53%), Gaps = 84/622 (13%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELF----DKIPQPDVVSYNIMLSC-----ILLN 51
           ++ K  + WNS++AGF  Q G   +A + F    D   +PD VS   +L+       LLN
Sbjct: 173 LDEKDNITWNSMIAGFT-QNGLYNEALQFFCGLQDANLKPDEVSLISILAASGRLGYLLN 231

Query: 52  SDDVVA-----------------------------AFDFFQRLPIKDTASWNTMISGFVQ 82
             ++ A                             A   F ++  KD  SW T+I+ + Q
Sbjct: 232 GKEIHAYAMKNWLDSNLRIGNTLIDMYSKCCCVAYAGLVFDKMINKDLISWTTVIAAYAQ 291

Query: 83  -----------KKNMAKARDL--------FLAMPEKNSVSWSAMISGYI----------- 112
                      +K   K  D+         LA      +S +  + GY            
Sbjct: 292 NNCHTEALKLLRKVQTKGMDVDTMMIGSTLLACSGLRCLSHAKEVHGYTLKRGLSDLMMQ 351

Query: 113 --------ECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI 164
                   +CG ++ A  +F+    K VV+WT+MIS Y     V N  A + L +  +M 
Sbjct: 352 NMIIDVYADCGNINYATRMFESIKCKDVVSWTSMISCY-----VHNGLANEALGVFYLMK 406

Query: 165 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 224
              + P++ +L S+L   + LS+L  GK++H  +F+     + + +  L+ MY  CG LE
Sbjct: 407 ETSVEPDSITLVSILSAAASLSALNKGKEIHGFIFRKGFMLEGSTVNSLVDMYACCGSLE 466

Query: 225 DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 284
           +A K+F+  + K +V W  MI+ Y  HG+G+ A+ LF  M+D+ + PD ITF+ALL AC+
Sbjct: 467 NAYKVFICTRSKSLVLWTTMINAYGMHGRGKAAVELFSIMEDQKLIPDHITFLALLYACS 526

Query: 285 HAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIF 344
           H+GL++ G +  ++M   Y +   P+HY C+VDLLGRA  L EA   +K M  +P   ++
Sbjct: 527 HSGLINEGKRLLETMKCKYQLEPWPEHYACLVDLLGRANHLEEAYHFVKSMQIEPTAEVW 586

Query: 345 GTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKE 404
              L ACR+H    L E AA  L +L+P ++ G YV ++N++AA  +W DV  +R+ MK 
Sbjct: 587 CAFLGACRIHSNKKLGEIAAQKLLDLDP-DSPGSYVLISNVFAASGRWKDVEEVRMRMKG 645

Query: 405 NNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKEL-EKRMKLAGYVPDLEFALH 463
             + K PG SWIEVG  VH F   D+ HPE   I++KL ++ EK  K  GYVP  +  LH
Sbjct: 646 GGLKKNPGCSWIEVGNKVHTFLVRDKSHPESYKIYQKLAQITEKLEKEGGYVPQTKLVLH 705

Query: 464 AVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREI 523
            VG+E K Q+L  HSE+LAIA+GL+    GTPIR+ KNLRVC DCH   K +S   +RE+
Sbjct: 706 NVGKEEKVQMLYGHSERLAIAYGLMSTSEGTPIRITKNLRVCVDCHTFCKLVSKFFEREL 765

Query: 524 IVRDTTRFHHFKDGTCSCGDYW 545
           IVRD +RFHHF+DG CSCGD+W
Sbjct: 766 IVRDASRFHHFEDGVCSCGDFW 787



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 55/184 (29%), Positives = 98/184 (53%), Gaps = 6/184 (3%)

Query: 105 SAMISGYIECGQLDKAVELF-KVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMM 163
           ++++S Y +C  +  A +LF ++     VV+W ++IS Y       N    + L L R M
Sbjct: 49  NSLVSMYAKCNDILGARKLFDRMNERNDVVSWNSIISAYSL-----NGQCMEALGLFREM 103

Query: 164 IGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDL 223
              G+  N  +L + L  C   S  +LG ++H  + KS    D      L++M+ + G +
Sbjct: 104 QKAGVGANTYTLVAALQACEDSSFKKLGMEIHAAILKSNQVLDVYVANALVAMHVRFGKM 163

Query: 224 EDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC 283
             A ++F E+  KD +TWN+MI+G+ Q+G   +AL+ F  ++D  +KPD ++ +++L A 
Sbjct: 164 SYAARIFDELDEKDNITWNSMIAGFTQNGLYNEALQFFCGLQDANLKPDEVSLISILAAS 223

Query: 284 NHAG 287
              G
Sbjct: 224 GRLG 227



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 73/283 (25%), Positives = 143/283 (50%), Gaps = 14/283 (4%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQ-PDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK 68
           NS+++ +AK    L  A++LFD++ +  DVVS+N ++S   LN   + A   F +     
Sbjct: 49  NSLVSMYAKCNDIL-GARKLFDRMNERNDVVSWNSIISAYSLNGQCMEALGLFREMQKAG 107

Query: 69  DTASWNTMISGFVQKKNMAKAR---DLFLAMPEKNSV----SWSAMISGYIECGQLDKAV 121
             A+  T+++     ++ +  +   ++  A+ + N V      +A+++ ++  G++  A 
Sbjct: 108 VGANTYTLVAALQACEDSSFKKLGMEIHAAILKSNQVLDVYVANALVAMHVRFGKMSYAA 167

Query: 122 ELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLG 181
            +F     K  + W +MI+G+      +N    + L+    +    ++P+  SL S+L  
Sbjct: 168 RIFDELDEKDNITWNSMIAGF-----TQNGLYNEALQFFCGLQDANLKPDEVSLISILAA 222

Query: 182 CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTW 241
              L  L  GK++H    K+ L  +      LI MY KC  +  A  +F ++  KD+++W
Sbjct: 223 SGRLGYLLNGKEIHAYAMKNWLDSNLRIGNTLIDMYSKCCCVAYAGLVFDKMINKDLISW 282

Query: 242 NAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 284
             +I+ YAQ+    +AL+L  K++ +GM  D++   + LLAC+
Sbjct: 283 TTVIAAYAQNNCHTEALKLLRKVQTKGMDVDTMMIGSTLLACS 325



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/130 (33%), Positives = 72/130 (55%), Gaps = 1/130 (0%)

Query: 166 LGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLED 225
           LG+  ++ +   VL  C  +  +  G ++H L+ K            L+SMY KC D+  
Sbjct: 4   LGVPFDSFTFPCVLKACGVVEDIHRGAEIHGLIIKCGYDSIVFVANSLVSMYAKCNDILG 63

Query: 226 ACKLFLEI-QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 284
           A KLF  + +R DVV+WN++IS Y+ +G+  +AL LF +M+  G+  ++ T VA L AC 
Sbjct: 64  ARKLFDRMNERNDVVSWNSIISAYSLNGQCMEALGLFREMQKAGVGANTYTLVAALQACE 123

Query: 285 HAGLVDLGIQ 294
            +    LG++
Sbjct: 124 DSSFKKLGME 133


>gi|16905194|gb|AAL31064.1|AC090120_10 hypothetical protein [Oryza sativa Japonica Group]
 gi|31432781|gb|AAP54374.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 698

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 209/544 (38%), Positives = 321/544 (59%), Gaps = 15/544 (2%)

Query: 11  SVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFF----QRLP 66
           S LA    + G L +A  +FD++PQ D V++  M+     N     A   F     + L 
Sbjct: 161 SNLADMYSKCGLLSEACRVFDQMPQKDAVAWTAMIDGYAKNGSLEAAVLSFRDMKREGLV 220

Query: 67  IKDTASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMISGYIECGQLDKAVE 122
             D   + +++S     K+   ++ +   +     E      +A+I  Y +   ++ A  
Sbjct: 221 GADQHVFCSVLSASGGLKDGWLSKSIHCCVTKAGFELEVAVRNALIDMYAKSMDVESASR 280

Query: 123 LFKVAPVK-SVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLG 181
           + K+ P   +VV+ T+MI GY     +E    E+ L +   +   G+ PN  + SS++ G
Sbjct: 281 VLKIDPGGWNVVSGTSMIDGY-----IETDCVEEALVIYVELRRQGVEPNEFTFSSMIKG 335

Query: 182 CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTW 241
           C+  + L+ G Q+H  V K+ L +D+   + L+ MY KCG +  + +LF EI+ +  + W
Sbjct: 336 CAMQALLEQGAQLHAQVIKTDLIRDSFVGSTLVDMYGKCGLISLSMQLFNEIEYRTDIAW 395

Query: 242 NAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN 301
           NA+I+ +AQHG G +A++ FD+M   G++P+ I FV+LL AC+HAGLVD G++YF SM  
Sbjct: 396 NAVINVFAQHGHGREAIQAFDRMIYSGIRPNHIAFVSLLTACSHAGLVDEGLKYFYSMKE 455

Query: 302 DYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAE 361
            +GI  K +HY+C++D  GRAG+L EA   I +MP KP    + +LL ACR+    +L E
Sbjct: 456 AHGIEPKEEHYSCIIDTYGRAGRLDEAYKFISEMPIKPNAYGWCSLLGACRMRGSKELGE 515

Query: 362 FAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTV 421
            AA NL  L P N  G +V L+ IYA++ +W+DV  +R  M+++ + K+PG+SW++    
Sbjct: 516 VAAQNLMKLEPGN-TGIHVSLSGIYASLGQWEDVKAVRKLMRDSRIKKLPGFSWVDSNKK 574

Query: 422 VHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKL 481
            H F S D  HP+   I+EKL+EL  R+K  GY+PD  F    + +  KE++L +HSE++
Sbjct: 575 THVFGSEDWSHPQQKDIYEKLEELTTRIKEEGYIPDTSFLPCNLEDIAKERILRYHSERI 634

Query: 482 AIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSC 541
           A+AF LI +P   PI V KNLR+C DCH A K+I  +E+R+IIVRD +RFHHF +G CSC
Sbjct: 635 AVAFALISMPATKPIIVKKNLRICIDCHTAFKFICKVERRDIIVRDNSRFHHFVNGRCSC 694

Query: 542 GDYW 545
           GDYW
Sbjct: 695 GDYW 698



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 61/206 (29%), Positives = 100/206 (48%), Gaps = 6/206 (2%)

Query: 78  SGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTA 137
           +G +++  +  AR +       ++   + +I+ Y  C  L  A+ LF   P ++ V+WT 
Sbjct: 33  AGDLRRGRLLHARLVLSGAAAASTFLANHLITMYSHCADLASALRLFAAMPRRNAVSWTT 92

Query: 138 MISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQL 197
           ++SG       +N    D L     M   G+ P   +LSS     + L +   G Q+H +
Sbjct: 93  LVSGLS-----QNLMHADALAAFAAMRRAGVAPTRFALSSAARAAAALGAPLPGAQLHCV 147

Query: 198 VFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKA 257
             +     +    + L  MY KCG L +AC++F ++ +KD V W AMI GYA++G  E A
Sbjct: 148 GVRLGFDTELFVASNLADMYSKCGLLSEACRVFDQMPQKDAVAWTAMIDGYAKNGSLEAA 207

Query: 258 LRLFDKMKDEGM-KPDSITFVALLLA 282
           +  F  MK EG+   D   F ++L A
Sbjct: 208 VLSFRDMKREGLVGADQHVFCSVLSA 233



 Score = 41.2 bits (95), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 71/169 (42%), Gaps = 11/169 (6%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVV 133
           N +I+ +    ++A A  LF AMP +N+VSW+ ++SG  +   +         A  ++ V
Sbjct: 60  NHLITMYSHCADLASALRLFAAMPRRNAVSWTTLVSGLSQ-NLMHADALAAFAAMRRAGV 118

Query: 134 AWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPN---ASSLSSVLLGCSHLSSLQL 190
           A T                   G +L  + + LG       AS+L+ +   C  LS    
Sbjct: 119 APTRFALSSAARAAAALGAPLPGAQLHCVGVRLGFDTELFVASNLADMYSKCGLLSEA-- 176

Query: 191 GKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVV 239
                  VF     KD  A T +I  Y K G LE A   F +++R+ +V
Sbjct: 177 -----CRVFDQMPQKDAVAWTAMIDGYAKNGSLEAAVLSFRDMKREGLV 220


>gi|125575213|gb|EAZ16497.1| hypothetical protein OsJ_31969 [Oryza sativa Japonica Group]
          Length = 617

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 209/544 (38%), Positives = 321/544 (59%), Gaps = 15/544 (2%)

Query: 11  SVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFF----QRLP 66
           S LA    + G L +A  +FD++PQ D V++  M+     N     A   F     + L 
Sbjct: 80  SNLADMYSKCGLLSEACRVFDQMPQKDAVAWTAMIDGYAKNGSLEAAVLSFRDMKREGLV 139

Query: 67  IKDTASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMISGYIECGQLDKAVE 122
             D   + +++S     K+   ++ +   +     E      +A+I  Y +   ++ A  
Sbjct: 140 GADQHVFCSVLSASGGLKDGWLSKSIHCCVTKAGFELEVAVRNALIDMYAKSMDVESASR 199

Query: 123 LFKVAPVK-SVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLG 181
           + K+ P   +VV+ T+MI GY     +E    E+ L +   +   G+ PN  + SS++ G
Sbjct: 200 VLKIDPGGWNVVSGTSMIDGY-----IETDCVEEALVIYVELRRQGVEPNEFTFSSMIKG 254

Query: 182 CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTW 241
           C+  + L+ G Q+H  V K+ L +D+   + L+ MY KCG +  + +LF EI+ +  + W
Sbjct: 255 CAMQALLEQGAQLHAQVIKTDLIRDSFVGSTLVDMYGKCGLISLSMQLFNEIEYRTDIAW 314

Query: 242 NAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN 301
           NA+I+ +AQHG G +A++ FD+M   G++P+ I FV+LL AC+HAGLVD G++YF SM  
Sbjct: 315 NAVINVFAQHGHGREAIQAFDRMIYSGIRPNHIAFVSLLTACSHAGLVDEGLKYFYSMKE 374

Query: 302 DYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAE 361
            +GI  K +HY+C++D  GRAG+L EA   I +MP KP    + +LL ACR+    +L E
Sbjct: 375 AHGIEPKEEHYSCIIDTYGRAGRLDEAYKFISEMPIKPNAYGWCSLLGACRMRGSKELGE 434

Query: 362 FAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTV 421
            AA NL  L P N  G +V L+ IYA++ +W+DV  +R  M+++ + K+PG+SW++    
Sbjct: 435 VAAQNLMKLEPGN-TGIHVSLSGIYASLGQWEDVKAVRKLMRDSRIKKLPGFSWVDSNKK 493

Query: 422 VHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKL 481
            H F S D  HP+   I+EKL+EL  R+K  GY+PD  F    + +  KE++L +HSE++
Sbjct: 494 THVFGSEDWSHPQQKDIYEKLEELTTRIKEEGYIPDTSFLPCNLEDIAKERILRYHSERI 553

Query: 482 AIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSC 541
           A+AF LI +P   PI V KNLR+C DCH A K+I  +E+R+IIVRD +RFHHF +G CSC
Sbjct: 554 AVAFALISMPATKPIIVKKNLRICIDCHTAFKFICKVERRDIIVRDNSRFHHFVNGRCSC 613

Query: 542 GDYW 545
           GDYW
Sbjct: 614 GDYW 617



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 54/164 (32%), Positives = 81/164 (49%), Gaps = 8/164 (4%)

Query: 128 PVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSS 187
           P ++ V+WT ++SG       +N    D L     M   G+ P   +LSS     + L +
Sbjct: 2   PRRNAVSWTTLVSGLS-----QNLMHADALAAFAAMRRAGVAPTRFALSSAARAAAALGA 56

Query: 188 LQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISG 247
              G Q+H +  +     +    + L  MY KCG L +AC++F ++ +KD V W AMI G
Sbjct: 57  PLPGAQLHCVGVRLGFDTELFVASNLADMYSKCGLLSEACRVFDQMPQKDAVAWTAMIDG 116

Query: 248 YAQHGKGEKALRLFDKMKDEGM-KPDSITFVALLLACNHAGLVD 290
           YA++G  E A+  F  MK EG+   D   F ++L A    GL D
Sbjct: 117 YAKNGSLEAAVLSFRDMKREGLVGADQHVFCSVLSA--SGGLKD 158


>gi|449500413|ref|XP_004161091.1| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Cucumis sativus]
          Length = 610

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 208/526 (39%), Positives = 293/526 (55%), Gaps = 46/526 (8%)

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP-----EKNSVSWSAMISG-- 110
           A   F  +P KD  SWN++ISGF +  +M+     F  M      + N V+  +MIS   
Sbjct: 93  ALKLFDDMPHKDLVSWNSLISGFSRCLHMSLTA--FYTMKFEMSVKPNEVTILSMISACN 150

Query: 111 -------------------------------YIECGQLDKAVELFKVAPVKSVVAWTAMI 139
                                          Y + G L  A  LF+  P  + V+W ++I
Sbjct: 151 GALDAGKYIHGFGIKVGGTLEVKVANSLINMYGKSGDLTSACRLFEAIPDPNTVSWNSII 210

Query: 140 SGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVF 199
           +       V N  A +G+     M  LGI  +  ++ ++L  C HL   +L + +H L+F
Sbjct: 211 AAQ-----VTNGCAREGIDYFNKMRRLGIEQDEGTILALLQACLHLGVGKLAESIHGLMF 265

Query: 200 KSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALR 259
            +      T  T L+  Y K G L  +  +F E+   D V W AM++GYA HG G +A++
Sbjct: 266 CTGFGAKITIATALLDTYAKLGRLSASYGVFTEVGFADRVAWTAMLAGYAAHGLGREAIK 325

Query: 260 LFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLL 319
           LF+ M ++G++PD +TF  LL AC+H+GLV+ G  YF+ M   YGI  + DHY+CMVDLL
Sbjct: 326 LFESMANKGLEPDHVTFTHLLSACSHSGLVNEGKSYFNVMSEVYGIEPRVDHYSCMVDLL 385

Query: 320 GRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCY 379
           GR G L +A ++I+ MP +P   ++G LL ACRVH  ++L +  A +L N+ P +    Y
Sbjct: 386 GRCGLLNDAYEVIQNMPMEPNAGVWGALLGACRVHGNIELGKEVAEHLINMEPLDPRN-Y 444

Query: 380 VQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIH 439
           + L+N+Y+A + W D A++R  +KE  + + PGYS IE G   H F  GDR HPE   I+
Sbjct: 445 IMLSNMYSASRSWKDAAKVRALLKERGLKRTPGYSSIEYGNKNHHFFVGDRSHPETEKIY 504

Query: 440 EKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVF 499
            KL+EL  +++ AGY    E+ L  V EEVKE ++  HSEKLAIAFGL+    G  + + 
Sbjct: 505 SKLEELLGKIRKAGYSSKTEYVLQDVEEEVKEDMINKHSEKLAIAFGLLVSKEGEALIIT 564

Query: 500 KNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           KNLR+CGDCH   K IS IEKR II+RD  RFHHF DG CSC DYW
Sbjct: 565 KNLRICGDCHSTAKLISLIEKRTIIIRDPKRFHHFSDGFCSCADYW 610



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 63/236 (26%), Positives = 118/236 (50%), Gaps = 9/236 (3%)

Query: 107 MISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGL 166
           +++ Y + G  + A++LF   P K +V+W ++ISG+ +  ++  +          M   +
Sbjct: 80  LVTCYNKLGYAEDALKLFDDMPHKDLVSWNSLISGFSRCLHMSLT------AFYTMKFEM 133

Query: 167 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 226
            ++PN  ++ S++  C+   +L  GK +H    K     +      LI+MY K GDL  A
Sbjct: 134 SVKPNEVTILSMISACN--GALDAGKYIHGFGIKVGGTLEVKVANSLINMYGKSGDLTSA 191

Query: 227 CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHA 286
           C+LF  I   + V+WN++I+    +G   + +  F+KM+  G++ D  T +ALL AC H 
Sbjct: 192 CRLFEAIPDPNTVSWNSIIAAQVTNGCAREGIDYFNKMRRLGIEQDEGTILALLQACLHL 251

Query: 287 GLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPA 342
           G+  L  +    ++   G  AK    T ++D   + G+L  +  +  ++ F  + A
Sbjct: 252 GVGKLA-ESIHGLMFCTGFGAKITIATALLDTYAKLGRLSASYGVFTEVGFADRVA 306



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 98/179 (54%), Gaps = 11/179 (6%)

Query: 175 LSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ 234
           +S++L+  +   S+   +++H  VFKS L +D      L++ Y K G  EDA KLF ++ 
Sbjct: 42  VSALLIAVNSCPSISNCREIHARVFKSLLYRDGFIGDQLVTCYNKLGYAEDALKLFDDMP 101

Query: 235 RKDVVTWNAMISGYAQ--HGKGEKALRLFDKMKDE-GMKPDSITFVALLLACNHAGLVDL 291
            KD+V+WN++ISG+++  H     +L  F  MK E  +KP+ +T ++++ ACN  G +D 
Sbjct: 102 HKDLVSWNSLISGFSRCLH----MSLTAFYTMKFEMSVKPNEVTILSMISACN--GALDA 155

Query: 292 GIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSA 350
           G +Y        G   +      ++++ G++G L  A  L + +P  P    + ++++A
Sbjct: 156 G-KYIHGFGIKVGGTLEVKVANSLINMYGKSGDLTSACRLFEAIP-DPNTVSWNSIIAA 212



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 57/290 (19%), Positives = 107/290 (36%), Gaps = 79/290 (27%)

Query: 52  SDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPE------------- 98
           S D+ +A   F+ +P  +T SWN++I+  V      +  D F  M               
Sbjct: 185 SGDLTSACRLFEAIPDPNTVSWNSIIAAQVTNGCAREGIDYFNKMRRLGIEQDEGTILAL 244

Query: 99  ---------------------------KNSVSWSAMISGYIECGQLDKAVELFKVAPVKS 131
                                      K +++ +A++  Y + G+L  +  +F       
Sbjct: 245 LQACLHLGVGKLAESIHGLMFCTGFGAKITIA-TALLDTYAKLGRLSASYGVFTEVGFAD 303

Query: 132 VVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLG 191
            VAWTAM++GY   G        + +KL   M   G+ P+  + + +L  CSH   +  G
Sbjct: 304 RVAWTAMLAGYAAHG-----LGREAIKLFESMANKGLEPDHVTFTHLLSACSHSGLVNEG 358

Query: 192 KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQH 251
           K    ++       +   + P +  Y    DL   C L  +                   
Sbjct: 359 KSYFNVM------SEVYGIEPRVDHYSCMVDLLGRCGLLNDA------------------ 394

Query: 252 GKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN 301
                    ++ +++  M+P++  + ALL AC   G ++LG +  + ++N
Sbjct: 395 ---------YEVIQNMPMEPNAGVWGALLGACRVHGNIELGKEVAEHLIN 435


>gi|356522522|ref|XP_003529895.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
           mitochondrial-like [Glycine max]
          Length = 911

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 206/493 (41%), Positives = 294/493 (59%), Gaps = 16/493 (3%)

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISGYIECGQL 117
           F     K+  +WN++ISG+  K     A  L + M E+    + V+W++++SGY   G  
Sbjct: 426 FHHTKNKNICAWNSLISGYTYKGLFDNAEKLLIQMKEEGIKADLVTWNSLVSGYSMSGCS 485

Query: 118 DKAVELFK----VAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNAS 173
           ++A+ +      +    +VV+WTAMISG       +N    D L+    M    ++PN++
Sbjct: 486 EEALAVINRIKSLGLTPNVVSWTAMISGC-----CQNENYTDALQFFSQMQEENVKPNST 540

Query: 174 SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI 233
           ++S++L  C+  S L+ G+++H    K     D    T LI MY K G L+ A ++F  I
Sbjct: 541 TISTLLRACAGPSLLKKGEEIHCFSMKHGFVDDIYIATALIDMYSKGGKLKVAHEVFRNI 600

Query: 234 QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGI 293
           + K +  WN M+ GYA +G GE+   LFD M   G++PD+ITF ALL  C ++GLV  G 
Sbjct: 601 KEKTLPCWNCMMMGYAIYGHGEEVFTLFDNMCKTGIRPDAITFTALLSGCKNSGLVMDGW 660

Query: 294 QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRV 353
           +YFDSM  DY I    +HY+CMVDLLG+AG L EA+D I  MP K   +I+G +L+ACR+
Sbjct: 661 KYFDSMKTDYSINPTIEHYSCMVDLLGKAGFLDEALDFIHAMPQKADASIWGAVLAACRL 720

Query: 354 HKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPG- 412
           HK + +AE AA NLF L P N+A  YV + NIY+  ++W DV R++ SM     VK+P  
Sbjct: 721 HKDIKIAEIAARNLFRLEPYNSAN-YVLMMNIYSTFERWGDVERLKESMTAMG-VKIPNV 778

Query: 413 YSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQ 472
           +SWI+V   +H F +  + HPE   I+  L +L   +K  GYVPD       + +  KE+
Sbjct: 779 WSWIQVRQTIHVFSTEGKSHPEEGEIYFDLYQLISEIKKLGYVPDTNCVHQNIDDSEKEK 838

Query: 473 LLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFH 532
           +LL H+EKLA+ +GL+K+  GTPIRV KN R+C DCH A KYIS    REI +RD  RFH
Sbjct: 839 VLLSHTEKLAMTYGLMKIKGGTPIRVVKNTRICQDCHTAAKYISLARNREIFLRDGGRFH 898

Query: 533 HFKDGTCSCGDYW 545
           HF +G CSC D W
Sbjct: 899 HFMNGECSCNDRW 911



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 79/292 (27%), Positives = 144/292 (49%), Gaps = 13/292 (4%)

Query: 67  IKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKV 126
           + +T+  N+++S + +   +  AR +F +  + N  SW+++IS Y   G L+ A +LF+ 
Sbjct: 264 VSNTSICNSIVSMYSRNNRLELARAVFDSTEDHNLASWNSIISSYAVNGCLNGAWDLFRE 323

Query: 127 APVKSV----VAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGC 182
               S+    + W +++SG++  G  EN      L  +R +   G +P++ S++S L   
Sbjct: 324 MESSSIKPDIITWNSLLSGHLLQGSYENV-----LTNIRSLQSAGFKPDSCSITSALQAV 378

Query: 183 SHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWN 242
             L    LGK++H  + +S L  D    T L+ MY K   LE A  +F   + K++  WN
Sbjct: 379 IELGYFNLGKEIHGYIMRSKLEYDVYVCTSLVDMYIKNDCLEKAEVVFHHTKNKNICAWN 438

Query: 243 AMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVND 302
           ++ISGY   G  + A +L  +MK+EG+K D +T+ +L+   + +G  +  +   +  +  
Sbjct: 439 SLISGYTYKGLFDNAEKLLIQMKEEGIKADLVTWNSLVSGYSMSGCSEEALAVINR-IKS 497

Query: 303 YGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP---FKPQPAIFGTLLSAC 351
            G+      +T M+    +     +A+    +M     KP      TLL AC
Sbjct: 498 LGLTPNVVSWTAMISGCCQNENYTDALQFFSQMQEENVKPNSTTISTLLRAC 549



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 90/175 (51%), Gaps = 5/175 (2%)

Query: 106 AMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIG 165
           A+I+ Y +C  +D+A ++F   P++    W  ++   ++       W ED L+L R M  
Sbjct: 171 ALINLYEKCLGIDRANQVFDETPLQEDFLWNTIVMANLR----SERW-EDALELSRRMQS 225

Query: 166 LGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLED 225
              +    ++  +L  C  L +L  GKQ+H  V +     +T+    ++SMY +   LE 
Sbjct: 226 ASAKATDGTIVKLLQACGKLRALNEGKQIHGYVIRFGRVSNTSICNSIVSMYSRNNRLEL 285

Query: 226 ACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 280
           A  +F   +  ++ +WN++IS YA +G    A  LF +M+   +KPD IT+ +LL
Sbjct: 286 ARAVFDSTEDHNLASWNSIISSYAVNGCLNGAWDLFREMESSSIKPDIITWNSLL 340



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 57/247 (23%), Positives = 113/247 (45%), Gaps = 10/247 (4%)

Query: 84  KNMAKARDL---FLAMPEKNSVSW--SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAM 138
           + +   R+L    + MP+K ++     +M+  Y+E G  + A ++F V   ++ + W + 
Sbjct: 42  RTLNSVRELHAQMIKMPKKGNLVTMDGSMMRNYLEFGDFESATKVFFVGFARNYLLWNSF 101

Query: 139 ISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLV 198
           +  +  FG      + + L++ + +   G++ ++ +L+ VL  C  L  L LG +VH  +
Sbjct: 102 LEEFASFG----GDSHEILEVFKELHDKGVKFDSKALTVVLKICLALMELWLGMEVHACL 157

Query: 199 FKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKAL 258
            K     D      LI++Y KC  ++ A ++F E   ++   WN ++    +  + E AL
Sbjct: 158 LKRGFQVDVHLSCALINLYEKCLGIDRANQVFDETPLQEDFLWNTIVMANLRSERWEDAL 217

Query: 259 RLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDL 318
            L  +M+    K    T V LL AC     ++ G Q    ++  +G  +       +V +
Sbjct: 218 ELSRRMQSASAKATDGTIVKLLQACGKLRALNEGKQIHGYVIR-FGRVSNTSICNSIVSM 276

Query: 319 LGRAGKL 325
             R  +L
Sbjct: 277 YSRNNRL 283


>gi|15233584|ref|NP_193218.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274931|sp|O23337.1|PP311_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g14820
 gi|2244839|emb|CAB10261.1| hypothetical protein [Arabidopsis thaliana]
 gi|7268228|emb|CAB78524.1| hypothetical protein [Arabidopsis thaliana]
 gi|332658106|gb|AEE83506.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 722

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 217/559 (38%), Positives = 329/559 (58%), Gaps = 22/559 (3%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILL------NSDD 54
           M+ +  V WN+++  + +  G + +A +LF+++   +V+   ++L  I+       N   
Sbjct: 172 MSHRDVVTWNTMIERYCR-FGLVDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRY 230

Query: 55  VVAAFDFFQRLPIK-DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE 113
             A ++F     ++ DT     +++ +     M  AR+ F  M  +N    +AM+SGY +
Sbjct: 231 NRAIYEFLIENDVRMDTHLLTALVTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSK 290

Query: 114 CGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNAS 173
           CG+LD A  +F     K +V WT MIS Y     VE+ + ++ L++   M   GI+P+  
Sbjct: 291 CGRLDDAQVIFDQTEKKDLVCWTTMISAY-----VESDYPQEALRVFEEMCCSGIKPDVV 345

Query: 174 SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI 233
           S+ SV+  C++L  L   K VH  +  + L  + +    LI+MY KCG L+    +F ++
Sbjct: 346 SMFSVISACANLGILDKAKWVHSCIHVNGLESELSINNALINMYAKCGGLDATRDVFEKM 405

Query: 234 QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGI 293
            R++VV+W++MI+  + HG+   AL LF +MK E ++P+ +TFV +L  C+H+GLV+ G 
Sbjct: 406 PRRNVVSWSSMINALSMHGEASDALSLFARMKQENVEPNEVTFVGVLYGCSHSGLVEEGK 465

Query: 294 QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRV 353
           + F SM ++Y I  K +HY CMVDL GRA  L EA+++I+ MP      I+G+L+SACR+
Sbjct: 466 KIFASMTDEYNITPKLEHYGCMVDLFGRANLLREALEVIESMPVASNVVIWGSLMSACRI 525

Query: 354 HKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGY 413
           H  L+L +FAA  +  L P +  G  V ++NIYA  ++W+DV  IR  M+E NV K  G 
Sbjct: 526 HGELELGKFAAKRILELEP-DHDGALVLMSNIYAREQRWEDVRNIRRVMEEKNVFKEKGL 584

Query: 414 SWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQL 473
           S I+     HEF  GD+ H +   I+ KL E+  ++KLAGYVPD    L  V EE K+ L
Sbjct: 585 SRIDQNGKSHEFLIGDKRHKQSNEIYAKLDEVVSKLKLAGYVPDCGSVLVDVEEEEKKDL 644

Query: 474 LLFHSEKLAIAFGLI-------KVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVR 526
           +L+HSEKLA+ FGL+       K   G  IR+ KNLRVC DCH   K +S + +REIIVR
Sbjct: 645 VLWHSEKLALCFGLMNEEKEEEKDSCGV-IRIVKNLRVCEDCHLFFKLVSKVYEREIIVR 703

Query: 527 DTTRFHHFKDGTCSCGDYW 545
           D TRFH +K+G CSC DYW
Sbjct: 704 DRTRFHCYKNGLCSCRDYW 722



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 93/392 (23%), Positives = 177/392 (45%), Gaps = 56/392 (14%)

Query: 26  AQELFDKIPQP-DVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKK 84
           A  +F  IP P + + +N  L   L  S +  A   F+QR  I+         S     K
Sbjct: 63  ALNVFSSIPSPPESIVFNPFLR-DLSRSSEPRATILFYQR--IRHVGGRLDQFSFLPILK 119

Query: 85  NMAKARDLFLAMPEKNSVSW-----------SAMISGYIECGQLDKAVELFKVAPVKSVV 133
            ++K   LF  M E + V++           +  +  Y  CG+++ A  +F     + VV
Sbjct: 120 AVSKVSALFEGM-ELHGVAFKIATLCDPFVETGFMDMYASCGRINYARNVFDEMSHRDVV 178

Query: 134 AWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ 193
            W  MI  Y +FG V     ++  KL   M    + P+   L +++  C    +++  + 
Sbjct: 179 TWNTMIERYCRFGLV-----DEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRA 233

Query: 194 VHQLVFKSPLCKDTTALTPLISMYC-------------------------------KCGD 222
           +++ + ++ +  DT  LT L++MY                                KCG 
Sbjct: 234 IYEFLIENDVRMDTHLLTALVTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSKCGR 293

Query: 223 LEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA 282
           L+DA  +F + ++KD+V W  MIS Y +    ++ALR+F++M   G+KPD ++  +++ A
Sbjct: 294 LDDAQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVISA 353

Query: 283 CNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPA 342
           C + G++D   ++  S ++  G+ ++      ++++  + G L    D+ +KMP +    
Sbjct: 354 CANLGILDKA-KWVHSCIHVNGLESELSINNALINMYAKCGGLDATRDVFEKMP-RRNVV 411

Query: 343 IFGTLLSACRVHKRLD--LAEFAAMNLFNLNP 372
            + ++++A  +H      L+ FA M   N+ P
Sbjct: 412 SWSSMINALSMHGEASDALSLFARMKQENVEP 443


>gi|125532437|gb|EAY79002.1| hypothetical protein OsI_34111 [Oryza sativa Indica Group]
          Length = 847

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 209/544 (38%), Positives = 321/544 (59%), Gaps = 15/544 (2%)

Query: 11  SVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFF----QRLP 66
           S LA    + G L +A  +FD++PQ D V++  M+     N     A   F     + L 
Sbjct: 310 SNLADMYSKCGLLSEACRVFDQMPQKDAVAWTAMIDGYAKNGSLEAAVLSFRDMKREGLV 369

Query: 67  IKDTASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMISGYIECGQLDKAVE 122
             D   + +++S     K+   ++ +   +     E      +A+I  Y +   ++ A  
Sbjct: 370 GADQHVFCSVLSASGGLKDGWLSKSIHCCVTKAGFELEVAVRNALIDMYAKSMDVESASR 429

Query: 123 LFKVAPVK-SVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLG 181
           + K+ P   +VV+ T+MI GY     +E    E+ L +   +   G+ PN  + SS++ G
Sbjct: 430 VLKIDPGGWNVVSGTSMIDGY-----IETDCVEEALVIYVELRRQGVEPNEFTFSSMIKG 484

Query: 182 CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTW 241
           C+  + L+ G Q+H  V K+ L +D+   + L+ MY KCG +  + +LF EI+ +  + W
Sbjct: 485 CAMQALLEQGAQLHAQVIKTDLIRDSFVGSTLVDMYGKCGLISLSMQLFNEIEYRTDIAW 544

Query: 242 NAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN 301
           NA+I+ +AQHG G +A++ FD+M   G++P+ I FV+LL AC+HAGLVD G++YF SM  
Sbjct: 545 NAVINVFAQHGHGREAIQAFDRMIYSGIRPNHIAFVSLLTACSHAGLVDEGLKYFYSMKE 604

Query: 302 DYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAE 361
            +GI  K +HY+C++D  GRAG+L EA   I +MP KP    + +LL ACR+    +L E
Sbjct: 605 AHGIEPKEEHYSCIIDTYGRAGRLDEAYKFISEMPIKPNAYGWCSLLGACRMRGSKELGE 664

Query: 362 FAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTV 421
            AA NL  L P N  G +V L+ IYA++ +W+DV  +R  M+++ + K+PG+SW++    
Sbjct: 665 VAAQNLMKLEPGN-TGIHVSLSGIYASLGQWEDVKAVRKLMRDSRIKKLPGFSWVDSNKK 723

Query: 422 VHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKL 481
            H F S D  HP+   I+EKL+EL  R+K  GY+PD  F    + +  KE++L +HSE++
Sbjct: 724 THVFGSEDWSHPQQKDIYEKLEELTTRIKEEGYIPDTSFLPCNLEDIAKERILRYHSERI 783

Query: 482 AIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSC 541
           A+AF LI +P   PI V KNLR+C DCH A K+I  +E+R+IIVRD +RFHHF +G CSC
Sbjct: 784 AVAFALISMPATKPIIVKKNLRICIDCHTAFKFICKVERRDIIVRDNSRFHHFVNGRCSC 843

Query: 542 GDYW 545
           GDYW
Sbjct: 844 GDYW 847



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 105/452 (23%), Positives = 189/452 (41%), Gaps = 58/452 (12%)

Query: 5   TTVNWNSVLAGFAK----QRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           TTV+  S+L    +    +RG+L  A+ +            N +++ +  +  D+ +A  
Sbjct: 169 TTVHLASLLQSCGRAGDLRRGRLLHARLVLSGAAAASTFLANHLIT-MYSHCADLASALR 227

Query: 61  FFQRLPIKDTASWNTMISGFVQ---------------KKNMAKAR----------DLFLA 95
            F  +P ++  SW T++SG  Q               +  +A  R              A
Sbjct: 228 LFAAMPRRNAVSWTTLVSGLSQNLMHADALAAFAAMRRAGVAPTRFALSSAARAAAALGA 287

Query: 96  MPEKNSVSWSAMIS-------------GYIECGQLDKAVELFKVAPVKSVVAWTAMISGY 142
                S + SA +               Y +CG L +A  +F   P K  VAWTAMI GY
Sbjct: 288 PLRARSCTASASVGFDTELFVASNLADMYSKCGLLSEACRVFDQMPQKDAVAWTAMIDGY 347

Query: 143 MKFGYVENSWAEDGLKLLRMMIGLG-IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKS 201
            K G +E +     +   R M   G +  +     SVL     L    L K +H  V K+
Sbjct: 348 AKNGSLEAA-----VLSFRDMKREGLVGADQHVFCSVLSASGGLKDGWLSKSIHCCVTKA 402

Query: 202 PLCKDTTALTPLISMYCKCGDLEDACKLF-LEIQRKDVVTWNAMISGYAQHGKGEKALRL 260
               +      LI MY K  D+E A ++  ++    +VV+  +MI GY +    E+AL +
Sbjct: 403 GFELEVAVRNALIDMYAKSMDVESASRVLKIDPGGWNVVSGTSMIDGYIETDCVEEALVI 462

Query: 261 FDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY--TCMVDL 318
           + +++ +G++P+  TF +++  C    L++ G Q    ++    I    D +  + +VD+
Sbjct: 463 YVELRRQGVEPNEFTFSSMIKGCAMQALLEQGAQLHAQVIKTDLIR---DSFVGSTLVDM 519

Query: 319 LGRAGKLVEAVDLIKKMPFKPQPAIFGTL-LSACRVHKRLDLAEFAAMNLFNLNPANAAG 377
            G+ G +  ++ L  ++ ++   A    + + A   H R  +  F  M    + P + A 
Sbjct: 520 YGKCGLISLSMQLFNEIEYRTDIAWNAVINVFAQHGHGREAIQAFDRMIYSGIRPNHIA- 578

Query: 378 CYVQLANIYAAMKKWDDVARIRLSMKENNVVK 409
            +V L    +     D+  +   SMKE + ++
Sbjct: 579 -FVSLLTACSHAGLVDEGLKYFYSMKEAHGIE 609



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 52/103 (50%), Gaps = 1/103 (0%)

Query: 175 LSSVLLGCSHLSSLQLGKQVH-QLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI 233
           L+S+L  C     L+ G+ +H +LV        T     LI+MY  C DL  A +LF  +
Sbjct: 23  LASLLQSCGRAGDLRRGRLLHARLVLSGAAAASTFLANHLITMYSHCADLASALRLFAAM 82

Query: 234 QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITF 276
            R++ V+W  ++SG +Q+     AL  F  M+  G+ P  + +
Sbjct: 83  PRRNAVSWTTLVSGLSQNLMHADALAAFAAMRRAGVAPTRLIY 125


>gi|449485565|ref|XP_004157209.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 953

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 228/604 (37%), Positives = 332/604 (54%), Gaps = 74/604 (12%)

Query: 2   NVKTTVNWNSVLAGFAK------------------------------QRGKLKDAQELFD 31
           +V  +V+WNS+LAG+ +                               RG + +A +LFD
Sbjct: 275 SVLDSVSWNSILAGYIEIGNVEEAKHIYHQMPERSIIASNSMIVLFGMRGLVVEACKLFD 334

Query: 32  KIPQPDVVSYNIMLSCILLNS-------------------DDVVAAF------------- 59
           ++ + D+V+++ +++C   N                    D+VVA               
Sbjct: 335 EMLEKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSALSACANLLVVNM 394

Query: 60  -DFFQRLPIK-DTASW----NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE 113
                 L +K  T S+    N +I  + +  ++  AR LF      + +SW++MISGY++
Sbjct: 395 GKLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVARKLFDEAYLLDLISWNSMISGYLK 454

Query: 114 CGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNAS 173
           C  +D A  +F   P K VV+W++MISGY      +N   ++ L L + M   G +P+ +
Sbjct: 455 CNLVDNAKAIFDSMPEKDVVSWSSMISGY-----AQNDLFDETLALFQEMQMSGFKPDET 509

Query: 174 SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI 233
           +L SV+  C+ L++L+ GK VH  + ++ L  +    T LI MY KCG +E A ++F  +
Sbjct: 510 TLVSVISACARLAALEQGKWVHAYIKRNGLTINVILGTTLIDMYMKCGCVETALEVFYGM 569

Query: 234 QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGI 293
             K + TWNA+I G A +G  E +L +F  MK   + P+ ITF+ +L AC H GLVD G 
Sbjct: 570 IEKGISTWNALILGLAMNGLVESSLDMFSNMKKCHVTPNEITFMGVLGACRHMGLVDEGQ 629

Query: 294 QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRV 353
            +F SM++D+ I     HY CMVDLLGRAGKL EA +L+ +MP  P  A +G LL AC+ 
Sbjct: 630 HHFYSMIHDHKIQPNVKHYGCMVDLLGRAGKLQEAEELLNRMPMTPDVATWGALLGACKK 689

Query: 354 HKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGY 413
           H   ++       L  L P +  G +V L+NIYA+  KWDDV  IR  M ++ V+K+PG 
Sbjct: 690 HGDSEMGRRVGRKLIELQP-DHDGFHVLLSNIYASKGKWDDVLEIRGMMTKHRVLKIPGC 748

Query: 414 SWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQL 473
           S IE   V+HEF +GD+ HP++ +I + L E+  ++KL GY PD+   L  V EE KE  
Sbjct: 749 SMIEANGVIHEFLAGDKTHPDMDAIEDMLVEMAMKLKLEGYTPDINEVLLDVDEEEKEST 808

Query: 474 LLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHH 533
           L  HSEKLAIAFGLI +   TPIR+ KNLR+C DCH A K IS    R+I+VRD  RFHH
Sbjct: 809 LFRHSEKLAIAFGLINISPPTPIRIMKNLRICNDCHTAAKLISKAFCRKIVVRDRHRFHH 868

Query: 534 FKDG 537
           F+ G
Sbjct: 869 FEQG 872



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 85/330 (25%), Positives = 160/330 (48%), Gaps = 38/330 (11%)

Query: 37  DVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM 96
           DV   N +++C  + S+ +  A   F    + D+ SWN++++G+++  N+ +A+ ++  M
Sbjct: 247 DVYVRNTLINCFSVCSN-MTDACRVFNESSVLDSVSWNSILAGYIEIGNVEEAKHIYHQM 305

Query: 97  PEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDG 156
           PE++ ++ ++MI  +   G + +A +LF     K +V W+A+I+ +      +N   E+ 
Sbjct: 306 PERSIIASNSMIVLFGMRGLVVEACKLFDEMLEKDMVTWSALIACFQ-----QNEMYEEA 360

Query: 157 LKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISM 216
           ++    M  +G+  +     S L  C++L  + +GK +H L  K            LI M
Sbjct: 361 IRTFVGMHKIGVMVDEVVAVSALSACANLLVVNMGKLIHSLSLKIGTESYINLQNALIYM 420

Query: 217 YCKCGDLEDACKLFLE-------------------------------IQRKDVVTWNAMI 245
           Y KCGD+  A KLF E                               +  KDVV+W++MI
Sbjct: 421 YSKCGDIMVARKLFDEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMI 480

Query: 246 SGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGI 305
           SGYAQ+   ++ L LF +M+  G KPD  T V+++ AC     ++ G ++  + +   G+
Sbjct: 481 SGYAQNDLFDETLALFQEMQMSGFKPDETTLVSVISACARLAALEQG-KWVHAYIKRNGL 539

Query: 306 AAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335
                  T ++D+  + G +  A+++   M
Sbjct: 540 TINVILGTTLIDMYMKCGCVETALEVFYGM 569



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 72/155 (46%), Gaps = 4/155 (2%)

Query: 146 GYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCK 205
            Y++ +       L + M+   +  +  +   ++  CS   S    KQVH  V K     
Sbjct: 187 AYIQTNSPHFAFTLYKSMLSNYLGADNYTYPLLIQACSIRRSEWEAKQVHNHVLKLGFDS 246

Query: 206 DTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMK 265
           D      LI+ +  C ++ DAC++F E    D V+WN++++GY + G  E+A  ++ +M 
Sbjct: 247 DVYVRNTLINCFSVCSNMTDACRVFNESSVLDSVSWNSILAGYIEIGNVEEAKHIYHQMP 306

Query: 266 DEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV 300
           +  +    I   ++++     GLV    + FD M+
Sbjct: 307 ERSI----IASNSMIVLFGMRGLVVEACKLFDEML 337


>gi|356506811|ref|XP_003522169.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 751

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 201/527 (38%), Positives = 300/527 (56%), Gaps = 52/527 (9%)

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP------------------------ 97
           F+ +P KD   W +MI GFV+  +  KA   ++ M                         
Sbjct: 234 FEEMPCKDAVLWTSMIDGFVKNGDFKKALTAYMKMVTDDVFIDQHVLCSTLSACSALKAS 293

Query: 98  ---------------EKNSVSWSAMISGYIECGQLDKAVELFKV-APVKSVVAWTAMISG 141
                          E  +   +A+   Y + G +  A  +F++ +   S+V+ TA+I G
Sbjct: 294 SFGKSLHATILKLGFEYETFIGNALTDMYSKSGDMVSASNVFQIHSDCISIVSLTAIIDG 353

Query: 142 YMKFGYVENSWAEDGLKLLRMMIGL---GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLV 198
           Y++   +E        K L   + L   GI PN  + +S++  C++ + L+ G Q+H  V
Sbjct: 354 YVEMDQIE--------KALSTFVDLRRRGIEPNEFTFTSLIKACANQAKLEHGSQLHGQV 405

Query: 199 FKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKAL 258
            K    +D    + L+ MY KCG  + + +LF EI+  D + WN ++  ++QHG G  A+
Sbjct: 406 VKFNFKRDPFVSSTLVDMYGKCGLFDHSIQLFDEIENPDEIAWNTLVGVFSQHGLGRNAI 465

Query: 259 RLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDL 318
             F+ M   G+KP+++TFV LL  C+HAG+V+ G+ YF SM   YG+  K +HY+C++DL
Sbjct: 466 ETFNGMIHRGLKPNAVTFVNLLKGCSHAGMVEDGLNYFSSMEKIYGVVPKEEHYSCVIDL 525

Query: 319 LGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGC 378
           LGRAGKL EA D I  MPF+P    + + L AC++H  ++ A+FAA  L  L P N +G 
Sbjct: 526 LGRAGKLKEAEDFINNMPFEPNVFGWCSFLGACKIHGDMERAKFAADKLMKLEPEN-SGA 584

Query: 379 YVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSI 438
           +V L+NIYA  K+W+DV  +R  +K+ N+ K+PGYSW+++    H F   D  HP+   I
Sbjct: 585 HVLLSNIYAKEKQWEDVQSLRKMIKDGNMNKLPGYSWVDIRNKTHVFGVEDWSHPQKKEI 644

Query: 439 HEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRV 498
           +EKL  L  ++K  GYVP  E  L  + + +KE+LL +HSE++A+AF L+  P G PI V
Sbjct: 645 YEKLDNLLDQIKRIGYVPQTESVLIDMDDNLKEKLLHYHSERIAVAFSLLTCPTGMPIIV 704

Query: 499 FKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
            KNLRVC DCH A K+IS + +R IIVRD +RFHHF +G+CSCGDYW
Sbjct: 705 KKNLRVCSDCHSALKFISKVTERNIIVRDISRFHHFSNGSCSCGDYW 751



 Score =  118 bits (295), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 83/306 (27%), Positives = 144/306 (47%), Gaps = 37/306 (12%)

Query: 48  ILLNSDDVVAAFDFFQRL-----PIKDTASWNTMISGFVQKKNMAKARDLFLAMPE---- 98
            +L   + + +F F + L      + DT +   +I  + + K + K + L   +      
Sbjct: 48  FVLEGVEEIISFSFLKNLFGSGHKLSDTKTVAHLIQTYARTKELNKGKQLHAMLIRGGCL 107

Query: 99  KNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLK 158
            N+   +  ++ Y +CG+LD  ++LF     +++V+WT++I+G+       NS  ++ L 
Sbjct: 108 PNTFLSNHFLNLYSKCGELDYTIKLFDKMSQRNMVSWTSIITGF-----AHNSRFQEALS 162

Query: 159 LLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYC 218
               M   G      +LSSVL  C+ L ++Q G QVH LV K     +    + L  MY 
Sbjct: 163 SFCQMRIEGEIATQFALSSVLQACTSLGAIQFGTQVHCLVVKCGFGCELFVGSNLTDMYS 222

Query: 219 KCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVA 278
           KCG+L DACK F E+  KD V W +MI G+ ++G  +KAL  + KM  + +  D     +
Sbjct: 223 KCGELSDACKAFEEMPCKDAVLWTSMIDGFVKNGDFKKALTAYMKMVTDDVFIDQHVLCS 282

Query: 279 LLLACN-----------HAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVE 327
            L AC+           HA ++ LG +Y   + N             + D+  ++G +V 
Sbjct: 283 TLSACSALKASSFGKSLHATILKLGFEYETFIGN------------ALTDMYSKSGDMVS 330

Query: 328 AVDLIK 333
           A ++ +
Sbjct: 331 ASNVFQ 336


>gi|449455172|ref|XP_004145327.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449474033|ref|XP_004154055.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449510921|ref|XP_004163811.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
          Length = 649

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 209/536 (38%), Positives = 312/536 (58%), Gaps = 23/536 (4%)

Query: 25  DAQELFDKIPQPDVVSYNIMLSCILL--NSDDVVAAFDFFQRLPIK-DTASWNTMISG-- 79
           +A+++FDK  +  +  +N +   + L    +DV+  +     + +  D  ++  ++    
Sbjct: 122 NARKVFDKTRKRTIYVWNALFRALALAGRGNDVLELYPRMNMMGVSSDRFTYTYLLKACV 181

Query: 80  -------FVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSV 132
                  F+QK     A  L         V  + ++  Y   G +  A  +F   PVK+V
Sbjct: 182 ASECLVSFLQKGKEIHAHILRHGYGAHVHV-MTTLMDMYARFGCVSYASAVFDEMPVKNV 240

Query: 133 VAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIR---PNASSLSSVLLGCSHLSSLQ 189
           V+W+AMI+ Y K     N    + L+L R M+ L      PN+ ++ SVL  C+  ++L+
Sbjct: 241 VSWSAMIACYAK-----NGKPYEALELFREMM-LNTHDSVPNSVTMVSVLQACAAFAALE 294

Query: 190 LGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYA 249
            GK +H  + +  L      ++ LI+MY +CG LE    +F  + +KDVV WN++IS Y 
Sbjct: 295 QGKLIHAYILRRGLDSILPVISALITMYARCGKLESGQLIFDRMHKKDVVLWNSLISSYG 354

Query: 250 QHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKP 309
            HG G KA+++F++M D G  P  I+F+++L AC+H GLV+ G + F+SMV ++GI    
Sbjct: 355 LHGYGRKAIKIFEEMIDHGFSPSHISFISVLGACSHTGLVEEGKKLFESMVKEHGIQPSV 414

Query: 310 DHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFN 369
           +HY CMVDLLGRA +L EA  +I+ +  +P P ++G+LL ACR+H  ++LAE A+  LF 
Sbjct: 415 EHYACMVDLLGRANRLDEAAKIIEDLRIEPGPKVWGSLLGACRIHCHVELAERASKRLFK 474

Query: 370 LNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGD 429
           L P N AG YV LA+IYA  + WD+V R++  +    + K+PG SWIEV   ++ F S D
Sbjct: 475 LEPTN-AGNYVLLADIYAEAEMWDEVKRVKKLLDSRELQKVPGRSWIEVRRKIYSFTSVD 533

Query: 430 RVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIK 489
             +P+   +H  L  L   MK  GY P  +  L+ + +E KE+++L HSEKLA+AFGLI 
Sbjct: 534 EFNPQGEQLHALLVNLSNEMKQRGYTPQTKLVLYDLDQEEKERIVLGHSEKLAVAFGLIN 593

Query: 490 VPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
              G  IR+ KNLR+C DCH  TK+IS    REI+VRD  RFHHFKDG CSCGDYW
Sbjct: 594 TSKGDTIRITKNLRLCEDCHSVTKFISKFADREIMVRDLNRFHHFKDGVCSCGDYW 649



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 65/256 (25%), Positives = 124/256 (48%), Gaps = 13/256 (5%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI 164
           + +I+ + E   +D A ++F     +++  W A+       G        D L+L   M 
Sbjct: 108 TKLINMFSELDTVDNARKVFDKTRKRTIYVWNALFRALALAGR-----GNDVLELYPRMN 162

Query: 165 GLGIRPNASSLSSVLLGCSH----LSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKC 220
            +G+  +  + + +L  C      +S LQ GK++H  + +         +T L+ MY + 
Sbjct: 163 MMGVSSDRFTYTYLLKACVASECLVSFLQKGKEIHAHILRHGYGAHVHVMTTLMDMYARF 222

Query: 221 GDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKM--KDEGMKPDSITFVA 278
           G +  A  +F E+  K+VV+W+AMI+ YA++GK  +AL LF +M        P+S+T V+
Sbjct: 223 GCVSYASAVFDEMPVKNVVSWSAMIACYAKNGKPYEALELFREMMLNTHDSVPNSVTMVS 282

Query: 279 LLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 338
           +L AC     ++ G +   + +   G+ +     + ++ +  R GKL E+  LI     K
Sbjct: 283 VLQACAAFAALEQG-KLIHAYILRRGLDSILPVISALITMYARCGKL-ESGQLIFDRMHK 340

Query: 339 PQPAIFGTLLSACRVH 354
               ++ +L+S+  +H
Sbjct: 341 KDVVLWNSLISSYGLH 356



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 80/172 (46%), Gaps = 3/172 (1%)

Query: 170 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 229
           P   +   ++L  +  +SL     VHQL+      +D    T LI+M+ +   +++A K+
Sbjct: 67  PTQQTCELLILSAARRNSLSDALDVHQLLVDGGFDQDPFLATKLINMFSELDTVDNARKV 126

Query: 230 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLV 289
           F + +++ +  WNA+    A  G+G   L L+ +M   G+  D  T+  LL AC  +  +
Sbjct: 127 FDKTRKRTIYVWNALFRALALAGRGNDVLELYPRMNMMGVSSDRFTYTYLLKACVASECL 186

Query: 290 DLGIQ---YFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 338
              +Q      + +  +G  A     T ++D+  R G +  A  +  +MP K
Sbjct: 187 VSFLQKGKEIHAHILRHGYGAHVHVMTTLMDMYARFGCVSYASAVFDEMPVK 238



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 63/263 (23%), Positives = 116/263 (44%), Gaps = 34/263 (12%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDK--IPQPDVVSYNIMLSCILLNSDDVVAA 58
           M VK  V+W++++A +AK  GK  +A ELF +  +   D V  ++ +  +L       AA
Sbjct: 235 MPVKNVVSWSAMIACYAKN-GKPYEALELFREMMLNTHDSVPNSVTMVSVL----QACAA 289

Query: 59  FDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLD 118
           F   ++           +I  ++ ++ +    D  L +        SA+I+ Y  CG+L+
Sbjct: 290 FAALEQ---------GKLIHAYILRRGL----DSILPV-------ISALITMYARCGKLE 329

Query: 119 KAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSV 178
               +F     K VV W ++IS Y   GY         +K+   MI  G  P+  S  SV
Sbjct: 330 SGQLIFDRMHKKDVVLWNSLISSYGLHGY-----GRKAIKIFEEMIDHGFSPSHISFISV 384

Query: 179 LLGCSHLSSLQLGKQVHQ-LVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ-RK 236
           L  CSH   ++ GK++ + +V +  +         ++ +  +   L++A K+  +++   
Sbjct: 385 LGACSHTGLVEEGKKLFESMVKEHGIQPSVEHYACMVDLLGRANRLDEAAKIIEDLRIEP 444

Query: 237 DVVTWNAMISGYAQHGKGEKALR 259
               W +++     H   E A R
Sbjct: 445 GPKVWGSLLGACRIHCHVELAER 467


>gi|359491266|ref|XP_002280289.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 663

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 192/474 (40%), Positives = 296/474 (62%), Gaps = 8/474 (1%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVV 133
           N++++ +     M  A+ +F  MP+++ ++W++++ GY   G+L +A ELF + P ++ V
Sbjct: 196 NSLVNMYSIFSRMVDAKRVFDEMPQRDVITWTSVVKGYAMRGELVRARELFDMMPGRNDV 255

Query: 134 AWTAMISGYMKFGYVENSWAEDGLKLLR-MMIGLGIRPNASSLSSVLLGCSHLSSLQLGK 192
           +W  M++GY     V + +  + L+    M+    ++PN + L S+L  C+HL +L  GK
Sbjct: 256 SWAVMVAGY-----VGHRFYNEALQCFNDMLCHDEVKPNEAVLVSILSACAHLGALDQGK 310

Query: 193 QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHG 252
            +H  + K+ +   +   T LI MY KCG ++ A ++F  + ++D++TW +MISG + HG
Sbjct: 311 WIHVYIDKNRILLSSNISTALIDMYAKCGRIDCARRVFDGLHKRDLLTWTSMISGLSMHG 370

Query: 253 KGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY 312
            G + L  F +M  EG KPD IT + +L  C+H+GLV+ G+  F  M+  +GI  K +HY
Sbjct: 371 LGAECLWTFSEMLAEGFKPDDITLLGVLNGCSHSGLVEEGLSIFHDMIPLWGIVPKLEHY 430

Query: 313 TCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNP 372
            C++DLLGRAG+L  A + IK MP +P    +  LLSACR+H  +DL E    ++  L P
Sbjct: 431 GCLIDLLGRAGRLESAFEAIKSMPMEPDVVAWRALLSACRIHGDVDLGERIINHIAELCP 490

Query: 373 ANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVH 432
            +  G YV L+N+YA+M +W+ V ++R +M +      PG SWIE+  VVHEF + D++H
Sbjct: 491 GSHGGGYVLLSNLYASMGQWESVTKVRKAMSQRGSEGCPGCSWIEIDGVVHEFLAADKLH 550

Query: 433 PELVSIHEKLKELEKRMKL-AGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVP 491
           P +  I++KL E+ +R+ +  GYVP  +  L  + EE KEQ + +HSEKLA+AFGL+   
Sbjct: 551 PRISEINKKLNEVLRRISIEGGYVPSTKQVLFDLNEEDKEQAVSWHSEKLAVAFGLLSTQ 610

Query: 492 LGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
            GT IR+ KNLR C DCH A K IS +  REI+VRD +RFH F+ G CSC DYW
Sbjct: 611 EGT-IRITKNLRTCEDCHSAMKTISLVFNREIVVRDRSRFHTFRYGNCSCTDYW 663



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 64/264 (24%), Positives = 112/264 (42%), Gaps = 44/264 (16%)

Query: 99  KNSVSWSAMISGYIECGQLDKAVELFKVAP-VKSVVAWTAMISGYMKFGYVENSWAEDGL 157
           +N+     +I  YI C  L  A  +F   P +   + W  MI  Y K        +++ L
Sbjct: 85  QNTSLLGPLIHSYIGCRNLSFARIVFDQFPSLPPTIIWNLMIQAYSK-----TPSSQESL 139

Query: 158 KLLRMMIGLGIRPNAS---SLSSVLLGCSHLSSLQ-LGKQVHQLVFKSPLCKDTTALTPL 213
            L   M+  G RP ++   + + V   CS   +L+  G+ VH +V K     D      L
Sbjct: 140 YLFHQMLAHG-RPTSADKYTFTFVFTACSRHPTLRGYGENVHGMVVKDGYESDIFVGNSL 198

Query: 214 ISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEG----- 268
           ++MY     + DA ++F E+ ++DV+TW +++ GYA  G+  +A  LFD M         
Sbjct: 199 VNMYSIFSRMVDAKRVFDEMPQRDVITWTSVVKGYAMRGELVRARELFDMMPGRNDVSWA 258

Query: 269 ---------------------------MKPDSITFVALLLACNHAGLVDLGIQYFDSMVN 301
                                      +KP+    V++L AC H G +D G ++    ++
Sbjct: 259 VMVAGYVGHRFYNEALQCFNDMLCHDEVKPNEAVLVSILSACAHLGALDQG-KWIHVYID 317

Query: 302 DYGIAAKPDHYTCMVDLLGRAGKL 325
              I    +  T ++D+  + G++
Sbjct: 318 KNRILLSSNISTALIDMYAKCGRI 341



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 73/290 (25%), Positives = 122/290 (42%), Gaps = 44/290 (15%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVS-------------YNIMLSC 47
           M  +  + W SV+ G+A  RG+L  A+ELFD +P  + VS             YN  L C
Sbjct: 218 MPQRDVITWTSVVKGYA-MRGELVRARELFDMMPGRNDVSWAVMVAGYVGHRFYNEALQC 276

Query: 48  I--LLNSDDV-------VAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPE 98
              +L  D+V       V+       L   D   W   I  ++ K  +  + ++      
Sbjct: 277 FNDMLCHDEVKPNEAVLVSILSACAHLGALDQGKW---IHVYIDKNRILLSSNIS----- 328

Query: 99  KNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLK 158
                 +A+I  Y +CG++D A  +F     + ++ WT+MISG    G        + L 
Sbjct: 329 ------TALIDMYAKCGRIDCARRVFDGLHKRDLLTWTSMISGLSMHGL-----GAECLW 377

Query: 159 LLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQV-HQLVFKSPLCKDTTALTPLISMY 217
               M+  G +P+  +L  VL GCSH   ++ G  + H ++    +         LI + 
Sbjct: 378 TFSEMLAEGFKPDDITLLGVLNGCSHSGLVEEGLSIFHDMIPLWGIVPKLEHYGCLIDLL 437

Query: 218 CKCGDLEDACKLFLEI-QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKD 266
            + G LE A +    +    DVV W A++S    HG  +   R+ + + +
Sbjct: 438 GRAGRLESAFEAIKSMPMEPDVVAWRALLSACRIHGDVDLGERIINHIAE 487



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 69/154 (44%), Gaps = 5/154 (3%)

Query: 187 SLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR-KDVVTWNAMI 245
           SL   KQ+H  V    L ++T+ L PLI  Y  C +L  A  +F +       + WN MI
Sbjct: 67  SLTQIKQIHAQVVTHGLAQNTSLLGPLIHSYIGCRNLSFARIVFDQFPSLPPTIIWNLMI 126

Query: 246 SGYAQHGKGEKALRLFDKMKDEG--MKPDSITFVALLLACN-HAGLVDLGIQYFDSMVND 302
             Y++    +++L LF +M   G     D  TF  +  AC+ H  L   G      +V D
Sbjct: 127 QAYSKTPSSQESLYLFHQMLAHGRPTSADKYTFTFVFTACSRHPTLRGYGENVHGMVVKD 186

Query: 303 YGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 336
            G  +       +V++     ++V+A  +  +MP
Sbjct: 187 -GYESDIFVGNSLVNMYSIFSRMVDAKRVFDEMP 219


>gi|449451667|ref|XP_004143583.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
 gi|449504924|ref|XP_004162332.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 595

 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 216/550 (39%), Positives = 319/550 (58%), Gaps = 15/550 (2%)

Query: 5   TTVNWNSVLAGFAK----QRGKLKDAQELFDKIPQPDVVSYNIMLSCI-LLNSDDVVAAF 59
            T  WN+++  ++     +   L   Q L   +P        ++ +C  LL   + +   
Sbjct: 52  NTFMWNAIIRAYSNSDEPELAFLSYQQMLSSSVPHNSYTFPFLLRACRNLLAMGEALQVH 111

Query: 60  DFFQRLPI-KDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLD 118
               +L    D  + N ++  +     +  AR LF  +PE+++VSW+ MI GYI+ G + 
Sbjct: 112 GLVIKLGFGSDVFALNALLHVYALCGEIHCARQLFDNIPERDAVSWNIMIDGYIKSGDVK 171

Query: 119 KAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSV 178
            A  +F   P+K+VV+WT++ISG      VE   + + L L   M   G   +  +++S+
Sbjct: 172 TAYGVFLDMPLKNVVSWTSLISGL-----VEAGQSVEALSLCYEMQNAGFELDGVAIASL 226

Query: 179 LLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF--LEIQRK 236
           L  C++L +L  G+ +H  V  + +  D      L++MY KCGD+E+A  +F  L+  +K
Sbjct: 227 LTACANLGALDQGRWLHFYVLNNGVDVDRVIGCALVNMYVKCGDMEEALSVFGKLKGNQK 286

Query: 237 DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYF 296
           DV  W AMI G+A HG+G +AL  F++M+ EG++P+SITF A+L AC++ GLV+ G + F
Sbjct: 287 DVYIWTAMIDGFAIHGRGVEALEWFNRMRREGIRPNSITFTAVLRACSYGGLVEEGKELF 346

Query: 297 DSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKR 356
            SM   Y +    +HY CMVDLLGR+G+L EA +LIKKMP KP   I+G LL AC +H+ 
Sbjct: 347 KSMKCFYNVNPSIEHYGCMVDLLGRSGRLDEAKELIKKMPMKPSAVIWGALLKACWIHRD 406

Query: 357 LDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWI 416
             L      +L  ++ ++ +G Y+QLA I AA  KW + A +RL MK   V   PG S +
Sbjct: 407 FLLGSQVGAHLVEVD-SDHSGRYIQLATILAAEGKWKEAAEVRLKMKSLGVPISPGKSSV 465

Query: 417 EVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKL-AGYVPDLEFALHAVGEEVKEQLLL 475
            +  +VHEF +G + HP++  I  KLK++ +R++   GY P  +  L  +  E KE  + 
Sbjct: 466 TLNGIVHEFLAGHQDHPQMEQIQLKLKQIAERLRQDEGYEPATKDLLLDLENEEKETAMA 525

Query: 476 FHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFK 535
            HSEKLAIAFGLI    GT IRV KNLR+C DCH   K +S I  REII+RD  RFHHF+
Sbjct: 526 QHSEKLAIAFGLINTKPGTTIRVIKNLRICRDCHTVAKLVSQIYSREIIMRDRVRFHHFR 585

Query: 536 DGTCSCGDYW 545
           DG+CSC DYW
Sbjct: 586 DGSCSCKDYW 595



 Score = 39.3 bits (90), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 25/96 (26%), Positives = 44/96 (45%), Gaps = 2/96 (2%)

Query: 192 KQVHQLVFKSPLCKDTTALTPLISMYCK--CGDLEDACKLFLEIQRKDVVTWNAMISGYA 249
           KQ+   + K+ +  +    T  +++      GDL  A ++F  I   +   WNA+I  Y+
Sbjct: 5   KQIQAQMIKTAIITEPKLATKFLTLCTSPHVGDLLYAQRVFNGITSPNTFMWNAIIRAYS 64

Query: 250 QHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNH 285
              + E A   + +M    +  +S TF  LL AC +
Sbjct: 65  NSDEPELAFLSYQQMLSSSVPHNSYTFPFLLRACRN 100


>gi|449440243|ref|XP_004137894.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  390 bits (1002), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 207/528 (39%), Positives = 301/528 (57%), Gaps = 13/528 (2%)

Query: 25  DAQELFDKIPQPDVVSYNIMLSCILLNSD--DVVAAFDFFQRLPIK-DTASWNTMISGFV 81
           DA ++FD IP  +VVS+  +++  + +    + + AF     + +K D+ S   +++   
Sbjct: 167 DALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACA 226

Query: 82  QKKNMAKAR--DLFLAMPE--KNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTA 137
           +  +       D +++     +N    ++++  Y++CG L++A  +F   P K +V+W+ 
Sbjct: 227 RLGDCTSGEWIDRYISDSGMGRNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWST 286

Query: 138 MISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQL 197
           MI GY       N   +  L L   M    ++P+  ++  VL  C+ L +L LG     L
Sbjct: 287 MIQGY-----AFNGLPQQALDLFFQMQSENLKPDCYTMVGVLSACATLGALDLGIWASSL 341

Query: 198 VFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKA 257
           + ++    +    T LI MY KCG +  A ++F  ++RKD V WNAM+ G + +G  +  
Sbjct: 342 MDRNEFLSNPVLGTALIDMYSKCGSVTQAWEIFTAMKRKDRVVWNAMMVGLSMNGHAKAV 401

Query: 258 LRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVD 317
             LF  ++  G++PD  TF+ LL  C H G V+ G Q+F++M   + +    +HY CMVD
Sbjct: 402 FSLFSLVEKHGIRPDENTFIGLLCGCTHGGFVNEGRQFFNNMKRVFSLTPSIEHYGCMVD 461

Query: 318 LLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAG 377
           LLGRAG L EA  LI  MP KP   ++G LL  C++HK   LAE     L  L P N+ G
Sbjct: 462 LLGRAGLLNEAHQLINNMPMKPNAVVWGALLGGCKLHKDTHLAEQVLKKLIELEPWNS-G 520

Query: 378 CYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVS 437
            YVQL+NIY+   +W++  +IR +MKE  + K+   SWIE+  +VHEF  GD+ H     
Sbjct: 521 NYVQLSNIYSGNHRWEEAEKIRSTMKEQQIQKIRACSWIEIDGIVHEFLVGDKSHWLSEK 580

Query: 438 IHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIR 497
           I+ KL EL + +K  G+VP  EF L  + EE KE  L +HSEKLA+AFGLI  P    IR
Sbjct: 581 IYAKLDELGRELKAVGHVPTTEFVLFDIEEEEKEHFLGYHSEKLAVAFGLIASPPNHVIR 640

Query: 498 VFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           V KNLRVCGDCH A K IS I KREII+RDT RFH F DG+CSC DYW
Sbjct: 641 VVKNLRVCGDCHDAIKLISKITKREIIIRDTNRFHTFIDGSCSCRDYW 688



 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 75/236 (31%), Positives = 137/236 (58%), Gaps = 6/236 (2%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI 164
           ++++S Y++C   D A+++F   P K+VV+WTA+I+GY+  G+       + +   + ++
Sbjct: 153 TSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHF-----REAIGAFKKLL 207

Query: 165 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 224
            +G++P++ SL  VL  C+ L     G+ + + +  S + ++    T L+ MY KCG+LE
Sbjct: 208 EMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVATSLLDMYVKCGNLE 267

Query: 225 DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 284
            A  +F  +  KD+V+W+ MI GYA +G  ++AL LF +M+ E +KPD  T V +L AC 
Sbjct: 268 RANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGVLSACA 327

Query: 285 HAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQ 340
             G +DLGI +  S+++     + P   T ++D+  + G + +A ++   M  K +
Sbjct: 328 TLGALDLGI-WASSLMDRNEFLSNPVLGTALIDMYSKCGSVTQAWEIFTAMKRKDR 382



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 104/382 (27%), Positives = 168/382 (43%), Gaps = 57/382 (14%)

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
           F + L IK+  S    ++ F Q K++  AR L L + + N +  + ++   ++ G  + +
Sbjct: 12  FSKALEIKNYLS--NGLNFFNQLKHI-HARLLRLHLDQDNYL-LNLILCCALDFGSTNYS 67

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLL 180
             +F      ++  W  MI G      V     +D + L   M G G  PN  ++  VL 
Sbjct: 68  KLVFSQVKEPNIFLWNTMIRGL-----VSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLK 122

Query: 181 GCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVT 240
            C+    ++LG ++H L+ K+    D    T L+S+Y KC + +DA K+F +I  K+VV+
Sbjct: 123 ACARKLDVRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVS 182

Query: 241 WNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV 300
           W A+I+GY   G   +A+  F K+ + G+KPDS + V +L AC   G    G ++ D  +
Sbjct: 183 WTAIITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDCTSG-EWIDRYI 241

Query: 301 NDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK-----------------PQPAI 343
           +D G+       T ++D+  + G L  A  +   MP K                 PQ A+
Sbjct: 242 SDSGMGRNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQAL 301

Query: 344 -----------------FGTLLSACRVHKRLDLAEFAA----MNLFNLNPA--------- 373
                               +LSAC     LDL  +A+     N F  NP          
Sbjct: 302 DLFFQMQSENLKPDCYTMVGVLSACATLGALDLGIWASSLMDRNEFLSNPVLGTALIDMY 361

Query: 374 NAAGCYVQLANIYAAMKKWDDV 395
           +  G   Q   I+ AMK+ D V
Sbjct: 362 SKCGSVTQAWEIFTAMKRKDRV 383



 Score = 68.6 bits (166), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 68/260 (26%), Positives = 109/260 (41%), Gaps = 28/260 (10%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G L+ A  +F  +P+ D+VS++ M+     N     A   FFQ           TM+ G 
Sbjct: 264 GNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMV-GV 322

Query: 81  VQKKNMAKARDLFLAMPE--------KNSVSWSAMISGYIECGQLDKAVELFKVAPVKSV 132
           +       A DL +             N V  +A+I  Y +CG + +A E+F     K  
Sbjct: 323 LSACATLGALDLGIWASSLMDRNEFLSNPVLGTALIDMYSKCGSVTQAWEIFTAMKRKDR 382

Query: 133 VAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGK 192
           V W AM+ G    G+     A+    L  ++   GIRP+ ++   +L GC+H   +  G+
Sbjct: 383 VVWNAMMVGLSMNGH-----AKAVFSLFSLVEKHGIRPDENTFIGLLCGCTHGGFVNEGR 437

Query: 193 QVHQLVFKSPLCKDTTALTPLISMY-C------KCGDLEDACKLFLEIQRK-DVVTWNAM 244
           Q    +      K   +LTP I  Y C      + G L +A +L   +  K + V W A+
Sbjct: 438 QFFNNM------KRVFSLTPSIEHYGCMVDLLGRAGLLNEAHQLINNMPMKPNAVVWGAL 491

Query: 245 ISGYAQHGKGEKALRLFDKM 264
           + G   H     A ++  K+
Sbjct: 492 LGGCKLHKDTHLAEQVLKKL 511


>gi|195611854|gb|ACG27757.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
          Length = 633

 Score =  390 bits (1002), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 203/462 (43%), Positives = 280/462 (60%), Gaps = 14/462 (3%)

Query: 92  LFLAM-PEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVEN 150
           LF  M P+ + VS +AM+S Y + GQLD A  LF   P K +V W AM+ GY + G    
Sbjct: 178 LFDGMRPDPHVVSVTAMLSCYAKMGQLDDARGLFDALPRKDLVCWNAMMDGYTQHGR--- 234

Query: 151 SWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVF----KSPLCKD 206
               + L+L R M+  G+ P+  S+   L   + L + + G+ +H  V     ++ +  +
Sbjct: 235 --PSEALRLFRQMLRSGVEPDEVSVVLALSAVAQLGTAESGRWLHSFVANGGRRARVRLN 292

Query: 207 TTALTPLISMYCKCGDLEDACKLFLEIQ---RKDVVTWNAMISGYAQHGKGEKALRLFDK 263
               T L+ MY KCG LE+A  +F ++     +DVV WNAMI+GYA HG+  +AL  F +
Sbjct: 293 ARVGTALVDMYYKCGSLEEAVAVFRDLGGGGDRDVVAWNAMINGYAMHGRSREALEAFGQ 352

Query: 264 MKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAG 323
           ++ +G+ P  ITF+ +L AC+H+GLVD G   F +M  +YGI  K +HY CMVDLLGRAG
Sbjct: 353 LRAQGLWPTDITFIGVLNACSHSGLVDEGRALFAAMEEEYGIVPKVEHYGCMVDLLGRAG 412

Query: 324 KLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLA 383
           ++ EA DL++ M  KP  A++ +LL ACR+HK L L +  A  L     AN+ G YV L+
Sbjct: 413 RVEEAFDLVQSMKAKPDAAMWASLLGACRLHKNLALGQRVADYLVGNGLANS-GTYVLLS 471

Query: 384 NIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLK 443
           N+YAA  KW +V R+R  M+ + V K PG S +EVG  V EF +GDR HP    I+ KL+
Sbjct: 472 NMYAAAGKWREVGRVRSMMRASGVQKEPGCSAVEVGRRVVEFVAGDRSHPRSAEIYAKLE 531

Query: 444 ELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLR 503
           E+    +  G+VP  E  LH + +  KE+ L  HSEKLA+AFGLI  P  T I++ KNLR
Sbjct: 532 EVNSIARARGHVPHTELVLHDLDDAAKERALAVHSEKLALAFGLISTPPRTGIKIVKNLR 591

Query: 504 VCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
            C DCH   K +S    R+I+ RD  RFHHF DG+CSCGDYW
Sbjct: 592 ACADCHAVLKLVSEATGRKIVFRDRNRFHHFVDGSCSCGDYW 633


>gi|145333540|ref|NP_001078415.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332658995|gb|AEE84395.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 462

 Score =  390 bits (1002), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 194/442 (43%), Positives = 282/442 (63%), Gaps = 7/442 (1%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI 164
           ++++  Y  CG +  A ++F   P K +VAW ++I+G+      EN   E+ L L   M 
Sbjct: 27  NSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGF-----AENGKPEEALALYTEMN 81

Query: 165 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 224
             GI+P+  ++ S+L  C+ + +L LGK+VH  + K  L ++  +   L+ +Y +CG +E
Sbjct: 82  SKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVE 141

Query: 225 DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKD-EGMKPDSITFVALLLAC 283
           +A  LF E+  K+ V+W ++I G A +G G++A+ LF  M+  EG+ P  ITFV +L AC
Sbjct: 142 EAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYAC 201

Query: 284 NHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAI 343
           +H G+V  G +YF  M  +Y I  + +H+ CMVDLL RAG++ +A + IK MP +P   I
Sbjct: 202 SHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVI 261

Query: 344 FGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMK 403
           + TLL AC VH   DLAEFA + +  L P N +G YV L+N+YA+ ++W DV +IR  M 
Sbjct: 262 WRTLLGACTVHGDSDLAEFARIQILQLEP-NHSGDYVLLSNMYASEQRWSDVQKIRKQML 320

Query: 404 ENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALH 463
            + V K+PG+S +EVG  VHEF  GD+ HP+  +I+ KLKE+  R++  GYVP +     
Sbjct: 321 RDGVKKVPGHSLVEVGNRVHEFLMGDKSHPQSDAIYAKLKEMTGRLRSEGYVPQISNVYV 380

Query: 464 AVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREI 523
            V EE KE  +++HSEK+AIAF LI  P  +PI V KNLRVC DCH A K +S +  REI
Sbjct: 381 DVEEEEKENAVVYHSEKIAIAFMLISTPERSPITVVKNLRVCADCHLAIKLVSKVYNREI 440

Query: 524 IVRDTTRFHHFKDGTCSCGDYW 545
           +VRD +RFHHFK+G+CSC DYW
Sbjct: 441 VVRDRSRFHHFKNGSCSCQDYW 462



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 51/151 (33%), Positives = 87/151 (57%), Gaps = 1/151 (0%)

Query: 185 LSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAM 244
           ++ ++LG+ +H +V +S           L+ +Y  CGD+  A K+F ++  KD+V WN++
Sbjct: 1   MADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSV 60

Query: 245 ISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYG 304
           I+G+A++GK E+AL L+ +M  +G+KPD  T V+LL AC   G + LG +    M+   G
Sbjct: 61  INGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIK-VG 119

Query: 305 IAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335
           +         ++DL  R G++ EA  L  +M
Sbjct: 120 LTRNLHSSNVLLDLYARCGRVEEAKTLFDEM 150



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 61/291 (20%), Positives = 129/291 (44%), Gaps = 47/291 (16%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNS--DDVVAAFDFFQRLPI 67
           NS+L  +A   G +  A ++FDK+P+ D+V++N +++    N   ++ +A +       I
Sbjct: 27  NSLLHLYANC-GDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGI 85

Query: 68  K-DTASWNTMISGFVQKKNMAKARDLFLAMPE----KNSVSWSAMISGYIECGQLDKAVE 122
           K D  +  +++S   +   +   + + + M +    +N  S + ++  Y  CG++++A  
Sbjct: 86  KPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKT 145

Query: 123 LFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGL-GIRPNASSLSSVLLG 181
           LF     K+ V+WT++I      G   N + ++ ++L + M    G+ P   +   +L  
Sbjct: 146 LFDEMVDKNSVSWTSLI-----VGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYA 200

Query: 182 CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTW 241
           CSH   ++ G +  + +      ++   + P I  +                        
Sbjct: 201 CSHCGMVKEGFEYFRRM------REEYKIEPRIEHF------------------------ 230

Query: 242 NAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 292
             M+   A+ G+ +KA   ++ +K   M+P+ + +  LL AC   G  DL 
Sbjct: 231 GCMVDLLARAGQVKKA---YEYIKSMPMQPNVVIWRTLLGACTVHGDSDLA 278



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 68/133 (51%), Gaps = 10/133 (7%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  K  V WNSV+ GFA + GK ++A  L+ ++    +      +   LL++   + A  
Sbjct: 49  MPEKDLVAWNSVINGFA-ENGKPEEALALYTEMNSKGIKPDGFTIVS-LLSACAKIGALT 106

Query: 61  FFQRLPI--------KDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYI 112
             +R+ +        ++  S N ++  + +   + +A+ LF  M +KNSVSW+++I G  
Sbjct: 107 LGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLA 166

Query: 113 ECGQLDKAVELFK 125
             G   +A+ELFK
Sbjct: 167 VNGFGKEAIELFK 179


>gi|449484291|ref|XP_004156841.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g14050, mitochondrial-like [Cucumis sativus]
          Length = 611

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 202/484 (41%), Positives = 299/484 (61%), Gaps = 18/484 (3%)

Query: 69  DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAP 128
           D    +++I  + +     +AR +F ++  KNSVSW++MISGY   G+  +A++LF  AP
Sbjct: 139 DEVVKSSLIDMYTKCGQPDEARAVFDSILFKNSVSWTSMISGYARSGRKCEAMDLFLQAP 198

Query: 129 VKSVVAWTAMISGYMKFGY------VENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGC 182
           V+++ +WTA+ISG ++ G+      + N    +G+ ++  ++          LSSV+ GC
Sbjct: 199 VRNLFSWTALISGLIQSGHGIYSFSLFNEMRREGIDIVDPLV----------LSSVVGGC 248

Query: 183 SHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWN 242
           ++L+ L+LGKQ+H LV              L+ MY KC D+  A  +F  + RKDV++W 
Sbjct: 249 ANLALLELGKQIHGLVIALGFESCLFISNALVDMYAKCSDILAAKDIFYRMPRKDVISWT 308

Query: 243 AMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVND 302
           ++I G AQHGK E+AL L+D+M    +KP+ +TFV LL AC+HAGLV  G + F SM  D
Sbjct: 309 SIIVGTAQHGKAEEALTLYDEMVLSRIKPNEVTFVGLLYACSHAGLVSRGRELFRSMTTD 368

Query: 303 YGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEF 362
           Y I     HYTC++DLL R+G L EA +L+ K+PFKP    + +LLSAC  H  L++   
Sbjct: 369 YSINPSLQHYTCLLDLLSRSGHLDEAENLLDKIPFKPDEPTWASLLSACMRHNNLEMGVR 428

Query: 363 AAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVV 422
            A  + +L P + +  Y+ L+N+YA  + W  V+++R  M    V K PGYS I+ G   
Sbjct: 429 IADRVLDLKPEDPS-TYILLSNVYAGAEMWGSVSKVRKLMSSMEVRKEPGYSSIDFGKDS 487

Query: 423 HEFRSGDRV-HPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKL 481
             F +G+   HP    I   LK+L+  M+  GYVP+  F L+ + ++ KE+ L +HSE+L
Sbjct: 488 QVFHAGESCDHPMKNEICNLLKDLDAEMRKRGYVPNTSFVLYDIEQQEKEKQLFWHSERL 547

Query: 482 AIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSC 541
           A+A+GL+K   GT IR+ KNLR+CGDCH   K+IS I KREI+VRD TR+HHFK+G CSC
Sbjct: 548 AVAYGLLKAVPGTIIRIVKNLRICGDCHNVLKFISDIVKREIMVRDATRYHHFKEGKCSC 607

Query: 542 GDYW 545
            D+W
Sbjct: 608 NDFW 611



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 72/274 (26%), Positives = 127/274 (46%), Gaps = 39/274 (14%)

Query: 98  EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGL 157
           +K+S+  + ++  Y +CG + +A++LF   P +  V+W ++++ + K      +     L
Sbjct: 35  DKSSLLSNTLLDVYGKCGLIPQALQLFDEMPNRDHVSWASILTAHNKALIPRRT-----L 89

Query: 158 KLLRMMIGL-GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISM 216
            +L  M    G++P+    + ++  CS L  L+LGKQVH     S  C D    + LI M
Sbjct: 90  SMLNTMFTHDGLQPDHFVFACIVRACSSLGYLRLGKQVHARFMLSXFCDDEVVKSSLIDM 149

Query: 217 YCKCGDLEDACKLFLEIQRKDVVTWNAMISGYA--------------------------- 249
           Y KCG  ++A  +F  I  K+ V+W +MISGYA                           
Sbjct: 150 YTKCGQPDEARAVFDSILFKNSVSWTSMISGYARSGRKCEAMDLFLQAPVRNLFSWTALI 209

Query: 250 ----QHGKGEKALRLFDKMKDEGMK-PDSITFVALLLACNHAGLVDLGIQYFDSMVNDYG 304
               Q G G  +  LF++M+ EG+   D +   +++  C +  L++LG Q    +V   G
Sbjct: 210 SGLIQSGHGIYSFSLFNEMRREGIDIVDPLVLSSVVGGCANLALLELGKQ-IHGLVIALG 268

Query: 305 IAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 338
             +       +VD+  +   ++ A D+  +MP K
Sbjct: 269 FESCLFISNALVDMYAKCSDILAAKDIFYRMPRK 302



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 76/294 (25%), Positives = 147/294 (50%), Gaps = 33/294 (11%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQ 63
           K +V+W S+++G+A+  G+  +A +LF + P  ++ S+  ++S  L+ S   + +F  F 
Sbjct: 169 KNSVSWTSMISGYARS-GRKCEAMDLFLQAPVRNLFSWTALISG-LIQSGHGIYSFSLFN 226

Query: 64  RL-----PIKDTASWNTMISGFVQKKNMA------KARDLFLAMPEKNSVSWS-AMISGY 111
            +      I D    ++++ G     N+A      +   L +A+  ++ +  S A++  Y
Sbjct: 227 EMRREGIDIVDPLVLSSVVGGCA---NLALLELGKQIHGLVIALGFESCLFISNALVDMY 283

Query: 112 IECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPN 171
            +C  +  A ++F   P K V++WT++I G  + G      AE+ L L   M+   I+PN
Sbjct: 284 AKCSDILAAKDIFYRMPRKDVISWTSIIVGTAQHGK-----AEEALTLYDEMVLSRIKPN 338

Query: 172 ASSLSSVLLGCSHLSSLQLGKQVHQLVFK----SPLCKDTTALTPLISMYCKCGDLEDAC 227
             +   +L  CSH   +  G+++ + +      +P  +  T L  L+S   + G L++A 
Sbjct: 339 EVTFVGLLYACSHAGLVSRGRELFRSMTTDYSINPSLQHYTCLLDLLS---RSGHLDEAE 395

Query: 228 KLFLEIQRK-DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKP-DSITFVAL 279
            L  +I  K D  TW +++S   +H   E  +R+ D++ D  +KP D  T++ L
Sbjct: 396 NLLDKIPFKPDEPTWASLLSACMRHNNLEMGVRIADRVLD--LKPEDPSTYILL 447



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/199 (22%), Positives = 85/199 (42%), Gaps = 31/199 (15%)

Query: 171 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 230
           N S     L  C+   S     ++H  + K+   K +     L+ +Y KCG +  A +LF
Sbjct: 2   NISHFLHQLQLCARRQSASAAGELHSQIIKAGFDKSSLLSNTLLDVYGKCGLIPQALQLF 61

Query: 231 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKM-KDEGMKPDSITFVALLLACNHAGLV 289
            E+  +D V+W ++++ + +     + L + + M   +G++PD   F  ++ AC+  G +
Sbjct: 62  DEMPNRDHVSWASILTAHNKALIPRRTLSMLNTMFTHDGLQPDHFVFACIVRACSSLGYL 121

Query: 290 DLGIQYF---------------DSMVNDYGIAAKPDH---------------YTCMVDLL 319
            LG Q                  S+++ Y    +PD                +T M+   
Sbjct: 122 RLGKQVHARFMLSXFCDDEVVKSSLIDMYTKCGQPDEARAVFDSILFKNSVSWTSMISGY 181

Query: 320 GRAGKLVEAVDLIKKMPFK 338
            R+G+  EA+DL  + P +
Sbjct: 182 ARSGRKCEAMDLFLQAPVR 200


>gi|358347383|ref|XP_003637737.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503672|gb|AES84875.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 561

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 199/508 (39%), Positives = 305/508 (60%), Gaps = 18/508 (3%)

Query: 48  ILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVS 103
           + + +D +  A     R   K+  +WN++ISG+  K    +A  L   M E+    + V+
Sbjct: 62  MYVKNDCLEKAQAVLHRAKNKNVCAWNSLISGYSFKGQFGEAVKLLNQMVEEGITPDLVT 121

Query: 104 WSAMISGYIECGQLDKAVELFK------VAPVKSVVAWTAMISGYMKFGYVENSWAEDGL 157
           W+ ++SGY   G++D+A+ +        + P  +VV+WTA+ISG       +N    D L
Sbjct: 122 WNGLVSGYSMQGRIDEALTIINRIKSSGITP--NVVSWTALISGC-----SQNEKYMDAL 174

Query: 158 KLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMY 217
           K+   M    ++PN++++ S+L  C+  S L+ G+++H    K     D    T LI MY
Sbjct: 175 KIFSQMQAENVKPNSTTICSLLCACAGPSLLKKGEELHCFSMKLGFVDDIYVATALIDMY 234

Query: 218 CKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFV 277
            + G L+ A  +F +IQ K +  WN M+ GYA H  GE+ + L+DKM++  ++PD+ITF 
Sbjct: 235 SEAGKLKVAYNVFNKIQEKTLPCWNCMMMGYAIHSHGEEVMILYDKMRERHIRPDAITFT 294

Query: 278 ALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPF 337
           ALL AC ++GLVD G +YFDSM  DY I    +HY CMVDLLG++G L EA   I+ MP 
Sbjct: 295 ALLSACKNSGLVDEGWKYFDSMQEDYNIVPTIEHYCCMVDLLGKSGFLDEASHFIETMPI 354

Query: 338 KPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVAR 397
           KP  +I+G LL++C++HK + LAE AA  LF + P N+A  YV + N+Y+++ +W  V R
Sbjct: 355 KPDASIWGALLASCKIHKNIKLAEIAARKLFKMEPNNSAN-YVLMMNLYSSLNRWVAVER 413

Query: 398 IRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPD 457
           ++ SM    +   P +SW +V   +H F +  R HPE   I+ +L +L   ++  GY PD
Sbjct: 414 LKHSMTVLAMKIPPVWSWTQVNQSIHVFSTEGRPHPEEGEIYFELYQLISEIRKLGYAPD 473

Query: 458 LEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISA 517
           L      + +  KE++L+ H+EKLA+ +G++K+  G+PIR+ KN R+C DCH   KYIS 
Sbjct: 474 LNCVCQNIDDNEKEKILMSHTEKLAMVYGVMKMKGGSPIRIVKNTRICFDCHTVAKYISL 533

Query: 518 IEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           + KREI++RD  RFHHFK+G C+C D W
Sbjct: 534 VRKREILLRDGGRFHHFKNGKCACNDRW 561



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 71/298 (23%), Positives = 141/298 (47%), Gaps = 19/298 (6%)

Query: 157 LKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISM 216
           L   R +  LG +P++ S++S L     L   +LGK++H  + +S L  D    T L+ M
Sbjct: 3   LTSFRSLHSLGFKPDSCSVTSALQAVIELGFFKLGKEIHGYIMRSNLNYDVYVCTSLVDM 62

Query: 217 YCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITF 276
           Y K   LE A  +    + K+V  WN++ISGY+  G+  +A++L ++M +EG+ PD +T+
Sbjct: 63  YVKNDCLEKAQAVLHRAKNKNVCAWNSLISGYSFKGQFGEAVKLLNQMVEEGITPDLVTW 122

Query: 277 VALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 336
             L+   +  G +D  +   +  +   GI      +T ++    +  K ++A+ +  +M 
Sbjct: 123 NGLVSGYSMQGRIDEALTIINR-IKSSGITPNVVSWTALISGCSQNEKYMDALKIFSQMQ 181

Query: 337 ---FKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWD 393
               KP      +LL AC     L   E   ++ F++        YV  A I      + 
Sbjct: 182 AENVKPNSTTICSLLCACAGPSLLKKGE--ELHCFSMKLGFVDDIYVATALI----DMYS 235

Query: 394 DVARIRLSMKENNVVK---MPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKR 448
           +  +++++    N ++   +P ++ + +G  +H          E++ +++K++E   R
Sbjct: 236 EAGKLKVAYNVFNKIQEKTLPCWNCMMMGYAIHSHGE------EVMILYDKMRERHIR 287


>gi|22093801|dbj|BAC07088.1| selenium-binding protein-like [Oryza sativa Japonica Group]
          Length = 643

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 213/525 (40%), Positives = 300/525 (57%), Gaps = 49/525 (9%)

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKA--------RDLFLAMPEKNSVSW--------- 104
           F  +  +D  SWNT+I G  + K   +A        RD F  MP+  ++S          
Sbjct: 127 FDEMLERDAVSWNTLILGCAEHKRHQEALSMVREMWRDGF--MPDTFTLSTVLPIFAECA 184

Query: 105 ------------------------SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMIS 140
                                   S++I  Y  C Q+D ++++F        V W +M++
Sbjct: 185 DIKRGMVVHGYAIKNGFDNDVFVGSSLIDMYANCTQMDYSMKVFDSFSDCDAVLWNSMLA 244

Query: 141 GYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK 200
           GY + G VE     + L + R M+  G+RP   + SS++    +LS L+LGKQ+H  + +
Sbjct: 245 GYAQNGSVE-----EALGIFRRMLQAGVRPVPVTFSSLIPAFGNLSLLRLGKQLHAYLIR 299

Query: 201 SPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRL 260
           +    +    + LI MYCKCG+++ A ++F  IQ  D+V+W AMI GYA HG   +A  L
Sbjct: 300 ARFNDNIFISSSLIDMYCKCGNVDIARRVFNGIQSPDIVSWTAMIMGYALHGPTTEAFVL 359

Query: 261 FDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLG 320
           F++M+   +KP+ ITF+A+L AC+HAGLVD G +YF+SM N YG     +H   + D LG
Sbjct: 360 FERMELGNVKPNHITFLAVLTACSHAGLVDNGWKYFNSMSNQYGFVPSLEHCAALADTLG 419

Query: 321 RAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYV 380
           RAG L EA + I +M  KP  +++ TLL ACRVHK   LAE  A  +F L P  + G +V
Sbjct: 420 RAGDLDEAYNFISEMKIKPTSSVWSTLLRACRVHKNTVLAEEVAKKIFELEP-KSMGSHV 478

Query: 381 QLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHE 440
            L+N+Y+A  +W++ A++R SM+   + K P  SWIEV   +H F + D+ HP    I +
Sbjct: 479 ILSNMYSASGRWNEAAQLRKSMRIKGMKKEPACSWIEVKNKLHVFIAHDKSHPWYDRIID 538

Query: 441 KLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFK 500
            L    ++M   GYVP++E  L  + EE K ++L  HSEKLAI FG+I  P GT IRV K
Sbjct: 539 ALNVYSEQMIRQGYVPNMEDVLQDIEEEQKREVLCGHSEKLAIVFGIISTPPGTTIRVMK 598

Query: 501 NLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           NLRVC DCH ATK+IS I  REI+VRD  RFH FKDG CSCGD+W
Sbjct: 599 NLRVCVDCHIATKFISKIVAREIVVRDVNRFHRFKDGNCSCGDFW 643



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 60/250 (24%), Positives = 106/250 (42%), Gaps = 38/250 (15%)

Query: 7   VNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP 66
           V WNS+LAG+A Q G +++A  +F ++ Q  V    +  S        ++ AF     L 
Sbjct: 237 VLWNSMLAGYA-QNGSVEEALGIFRRMLQAGVRPVPVTFS-------SLIPAFGNLSLLR 288

Query: 67  IKDTASWNTMISGFVQKKNMAKAR---DLFLAMPEKNSVSWSAMISGYIECGQLDKAVEL 123
           +           G      + +AR   ++F++         S++I  Y +CG +D A  +
Sbjct: 289 L-----------GKQLHAYLIRARFNDNIFIS---------SSLIDMYCKCGNVDIARRV 328

Query: 124 FKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCS 183
           F       +V+WTAMI GY   G    ++    +   RM +G  ++PN  +  +VL  CS
Sbjct: 329 FNGIQSPDIVSWTAMIMGYALHGPTTEAF----VLFERMELG-NVKPNHITFLAVLTACS 383

Query: 184 HLSSLQLG-KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVT-W 241
           H   +  G K  + +  +            L     + GDL++A     E++ K   + W
Sbjct: 384 HAGLVDNGWKYFNSMSNQYGFVPSLEHCAALADTLGRAGDLDEAYNFISEMKIKPTSSVW 443

Query: 242 NAMISGYAQH 251
           + ++     H
Sbjct: 444 STLLRACRVH 453



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 54/246 (21%), Positives = 97/246 (39%), Gaps = 54/246 (21%)

Query: 159 LLRMMIGLGIRPNA-SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMY 217
            L+M   +  R +  +SL + L  C+ L    L   +H L  +S    D      L+++ 
Sbjct: 35  FLQMRASVAPRSSVPASLPAALKSCAGLGLCTLAASLHALAIRSGSFADRFTANALLNLC 94

Query: 218 CKC---------------GDLEDAC-----KLFLEIQRKDVVTWNAMISGYAQHGKGEKA 257
            K                G LE A      K+F E+  +D V+WN +I G A+H + ++A
Sbjct: 95  IKLPGFHHPFGTNGPSGEGGLESAAYESMRKVFDEMLERDAVSWNTLILGCAEHKRHQEA 154

Query: 258 LRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGI--------QYFD-------SMVND 302
           L +  +M  +G  PD+ T   +L        +  G+          FD       S+++ 
Sbjct: 155 LSMVREMWRDGFMPDTFTLSTVLPIFAECADIKRGMVVHGYAIKNGFDNDVFVGSSLIDM 214

Query: 303 YGIAAKPDH---------------YTCMVDLLGRAGKLVEAVDLIKKM---PFKPQPAIF 344
           Y    + D+               +  M+    + G + EA+ + ++M     +P P  F
Sbjct: 215 YANCTQMDYSMKVFDSFSDCDAVLWNSMLAGYAQNGSVEEALGIFRRMLQAGVRPVPVTF 274

Query: 345 GTLLSA 350
            +L+ A
Sbjct: 275 SSLIPA 280


>gi|356515406|ref|XP_003526391.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Glycine max]
          Length = 647

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 219/544 (40%), Positives = 320/544 (58%), Gaps = 17/544 (3%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRL---- 65
           NS+L  +A+  G L+ A+ LFD++P  D+VS+  M++    N D    A   F R+    
Sbjct: 113 NSLLFMYARC-GSLEGARRLFDEMPHRDMVSWTSMITGYAQN-DRASDALLLFPRMLSDG 170

Query: 66  --PIKDTASWNTMISGFVQKKNMAKARD--LFLAMPEKNSVSWSAMISGYIECGQLDKAV 121
             P + T S      G++   N  +      +      N    S+++  Y  CG L +A+
Sbjct: 171 AEPNEFTLSSLVKCCGYMASYNCGRQIHACCWKYGCHSNVFVGSSLVDMYARCGYLGEAM 230

Query: 122 ELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLG 181
            +F     K+ V+W A+I+GY + G       E+ L L   M   G RP   + S++L  
Sbjct: 231 LVFDKLGCKNEVSWNALIAGYARKGE-----GEEALALFVRMQREGYRPTEFTYSALLSS 285

Query: 182 CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTW 241
           CS +  L+ GK +H  + KS           L+ MY K G + DA K+F ++ + DVV+ 
Sbjct: 286 CSSMGCLEQGKWLHAHLMKSSQKLVGYVGNTLLHMYAKSGSIRDAEKVFDKLVKVDVVSC 345

Query: 242 NAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN 301
           N+M+ GYAQHG G++A + FD+M   G++P+ ITF+++L AC+HA L+D G  YF  ++ 
Sbjct: 346 NSMLIGYAQHGLGKEAAQQFDEMIRFGIEPNDITFLSVLTACSHARLLDEGKHYF-GLMR 404

Query: 302 DYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAE 361
            Y I  K  HY  +VDLLGRAG L +A   I++MP +P  AI+G LL A ++HK  ++  
Sbjct: 405 KYNIEPKVSHYATIVDLLGRAGLLDQAKSFIEEMPIEPTVAIWGALLGASKMHKNTEMGA 464

Query: 362 FAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTV 421
           +AA  +F L+P+   G +  LANIYA+  +W+DVA++R  MK++ V K P  SW+EV   
Sbjct: 465 YAAQRVFELDPS-YPGTHTLLANIYASAGRWEDVAKVRKIMKDSGVKKEPACSWVEVENS 523

Query: 422 VHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKL 481
           VH F + D  HP+   IH+  ++L +++K  GYVPD    L  V ++ KE  L +HSEKL
Sbjct: 524 VHVFVANDVAHPQKEKIHKMWEKLNQKIKEIGYVPDTSHVLLFVDQQEKELNLQYHSEKL 583

Query: 482 AIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSC 541
           A++F L+  P G+ IR+ KN+RVCGDCH A KY+S + KREIIVRDT RFHHF DG CSC
Sbjct: 584 ALSFALLNTPPGSTIRIMKNIRVCGDCHSAIKYVSLVVKREIIVRDTNRFHHFCDGFCSC 643

Query: 542 GDYW 545
           GDYW
Sbjct: 644 GDYW 647



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 99/188 (52%), Gaps = 1/188 (0%)

Query: 153 AEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTP 212
           ++ GL +L ++    + P+ +  +++L  C+ L  L+ GK VH  V  S    D      
Sbjct: 55  SKTGLHVLDLIDCGSLEPDRTLYNTLLKRCTQLGKLKEGKLVHFHVLNSNFKHDLVIQNS 114

Query: 213 LISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPD 272
           L+ MY +CG LE A +LF E+  +D+V+W +MI+GYAQ+ +   AL LF +M  +G +P+
Sbjct: 115 LLFMYARCGSLEGARRLFDEMPHRDMVSWTSMITGYAQNDRASDALLLFPRMLSDGAEPN 174

Query: 273 SITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLI 332
             T  +L+  C +    + G Q   +    YG  +     + +VD+  R G L EA+ + 
Sbjct: 175 EFTLSSLVKCCGYMASYNCGRQ-IHACCWKYGCHSNVFVGSSLVDMYARCGYLGEAMLVF 233

Query: 333 KKMPFKPQ 340
            K+  K +
Sbjct: 234 DKLGCKNE 241


>gi|356567494|ref|XP_003551954.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Glycine max]
          Length = 722

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 224/551 (40%), Positives = 327/551 (59%), Gaps = 21/551 (3%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQP---DVVSYNIMLSCILLNSD--DVVAAFDFFQR 64
           N+VLA +++ +G L +A+ +F ++ +    D VS+N M+     + +  + V  F    R
Sbjct: 178 NAVLACYSR-KGFLNEARRVFREMGEGGGRDEVSWNAMIVACGQHREGLEAVELFREMVR 236

Query: 65  LPIK-DTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISGYIEC-GQLD 118
             +K D  +  ++++ F   K++         M +     NS   S +I  Y +C G + 
Sbjct: 237 RGLKVDMFTMASVLTAFTCVKDLVGGMQFHGMMIKSGFHGNSHVGSGLIDLYSKCAGGMV 296

Query: 119 KAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSV 178
           +  ++F+      +V W  MISG+ ++       +EDG+   R M   G  P+  S   V
Sbjct: 297 ECRKVFEEIAAPDLVLWNTMISGFSQY----EDLSEDGIWCFREMQHNGFHPDDCSFVCV 352

Query: 179 LLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALT-PLISMYCKCGDLEDACKLFLEIQRKD 237
              CS+LSS  +GKQVH L  KS +  +  ++   L++MY KCG++ DA ++F  +   +
Sbjct: 353 TSACSNLSSPSVGKQVHALAIKSDIPYNRVSVNNALVAMYSKCGNVHDARRVFDTMPEHN 412

Query: 238 VVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFD 297
           +V+ N+MI+GYAQHG   ++LRLF+ M  + + P++ITF+A+L AC H G V+ G +YF+
Sbjct: 413 MVSLNSMIAGYAQHGVEVESLRLFELMLQKDIAPNTITFIAVLSACVHTGKVEEGQKYFN 472

Query: 298 SMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRL 357
            M   + I  + +HY+CM+DLLGRAGKL EA  +I+ MPF P    + TLL ACR H  +
Sbjct: 473 MMKERFRIEPEAEHYSCMIDLLGRAGKLKEAERIIETMPFNPGSIEWATLLGACRKHGNV 532

Query: 358 DLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIE 417
           +LA  AA     L P NAA  YV L+N+YA+  +W++ A ++  M+E  V K PG SWIE
Sbjct: 533 ELAVKAANEFLQLEPYNAAP-YVMLSNMYASAARWEEAATVKRLMRERGVKKKPGCSWIE 591

Query: 418 VGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFAL---HAVGEEVKEQLL 474
           +   VH F + D  HP +  IH  + E+ ++MK AGYVPD+ +AL     V  + KE+ L
Sbjct: 592 IDKKVHVFVAEDTSHPMIKEIHVYMGEILRKMKQAGYVPDIRWALVKDEEVEPDEKERRL 651

Query: 475 LFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHF 534
           L+HSEKLA+AFGLI      PI V KNLR+CGDCH A K ISAI  REI VRDT RFH F
Sbjct: 652 LYHSEKLAVAFGLISTEEWVPILVVKNLRICGDCHNAIKLISAITGREITVRDTHRFHCF 711

Query: 535 KDGTCSCGDYW 545
           K+G CSCGDYW
Sbjct: 712 KEGHCSCGDYW 722



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 72/298 (24%), Positives = 135/298 (45%), Gaps = 47/298 (15%)

Query: 57  AAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQ 116
            +FD  Q     +  S+NT+I+ + +   +  AR +F  +P+ + VS++ +I+ Y + G+
Sbjct: 65  TSFDLTQ---YPNVFSYNTLINAYAKHSLIHLARQVFDEIPQPDIVSYNTLIAAYADRGE 121

Query: 117 LDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLS 176
              A+ LF  A V+            ++FG        DG                 +LS
Sbjct: 122 CRPALRLF--AEVRE-----------LRFGL-------DGF----------------TLS 145

Query: 177 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR- 235
            V++ C     + L +Q+H  V         +    +++ Y + G L +A ++F E+   
Sbjct: 146 GVIIACG--DDVGLVRQLHCFVVVCGYDCYASVNNAVLACYSRKGFLNEARRVFREMGEG 203

Query: 236 --KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGI 293
             +D V+WNAMI    QH +G +A+ LF +M   G+K D  T  ++L A      +  G+
Sbjct: 204 GGRDEVSWNAMIVACGQHREGLEAVELFREMVRRGLKVDMFTMASVLTAFTCVKDLVGGM 263

Query: 294 QYFDSMVNDYGIAAKPDHYTCMVDLLGR-AGKLVEAVDLIKKMPFKPQPAIFGTLLSA 350
           Q+   M+   G        + ++DL  + AG +VE   + +++   P   ++ T++S 
Sbjct: 264 QFHGMMIKS-GFHGNSHVGSGLIDLYSKCAGGMVECRKVFEEIA-APDLVLWNTMISG 319



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 63/148 (42%), Gaps = 32/148 (21%)

Query: 174 SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC------ 227
           +  ++L  C     L  GK +H L FKS +   T        +Y KCG L +A       
Sbjct: 11  TFRNLLKACIAQRDLITGKTLHALYFKSLIPPSTYLSNHFTLLYSKCGSLHNAQTSFDLT 70

Query: 228 -------------------------KLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFD 262
                                    ++F EI + D+V++N +I+ YA  G+   ALRLF 
Sbjct: 71  QYPNVFSYNTLINAYAKHSLIHLARQVFDEIPQPDIVSYNTLIAAYADRGECRPALRLFA 130

Query: 263 KMKDEGMKPDSITFVALLLAC-NHAGLV 289
           ++++     D  T   +++AC +  GLV
Sbjct: 131 EVRELRFGLDGFTLSGVIIACGDDVGLV 158



 Score = 44.3 bits (103), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 35/153 (22%), Positives = 69/153 (45%), Gaps = 11/153 (7%)

Query: 7   VNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP 66
           V+ N+ L     + G + DA+ +FD +P+ ++VS N M++    +  + V +   F+ + 
Sbjct: 382 VSVNNALVAMYSKCGNVHDARRVFDTMPEHNMVSLNSMIAGYAQHGVE-VESLRLFELML 440

Query: 67  IKD----TASWNTMISGFVQKKNMAKARDLFLAMPEKNSVS-----WSAMISGYIECGQL 117
            KD    T ++  ++S  V    + + +  F  M E+  +      +S MI      G+L
Sbjct: 441 QKDIAPNTITFIAVLSACVHTGKVEEGQKYFNMMKERFRIEPEAEHYSCMIDLLGRAGKL 500

Query: 118 DKAVELFKVAPVK-SVVAWTAMISGYMKFGYVE 149
            +A  + +  P     + W  ++    K G VE
Sbjct: 501 KEAERIIETMPFNPGSIEWATLLGACRKHGNVE 533


>gi|326528959|dbj|BAJ97501.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 514

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 187/443 (42%), Positives = 277/443 (62%), Gaps = 8/443 (1%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI 164
           +A++  Y +  +   A  +F   P + VV+WT++++G  +     +   +  L++ R M+
Sbjct: 78  NALVDAYAKLSRHGAARAVFDEMPRRDVVSWTSLLTGLAR-----SRSHDSALQVYRDMV 132

Query: 165 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 224
             G+ P+  ++++ L  C+  ++L+LG+ VH    +  L    +    L+SMY K G L 
Sbjct: 133 AAGVGPDEFAVAAALSSCAGATALELGRSVHAAAVRLALDPFLSVGNSLVSMYAKTGSLG 192

Query: 225 DACKLF--LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA 282
           +A K+F    + R D +TW A+I GYAQ+G+G ++L ++  M   G +PD +TF+ LL A
Sbjct: 193 EAKKVFDATRVDRCDPITWTALIVGYAQNGRGRESLEIYADMVRSGCRPDYVTFIGLLFA 252

Query: 283 CNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPA 342
           C+HAGLVD G  +F SM  ++GIA   DHY CMVDLLGRAG+L EA+DL+ +   +    
Sbjct: 253 CSHAGLVDAGRAHFRSMQAEHGIAPGADHYACMVDLLGRAGRLDEAMDLLNRSTTRLDAT 312

Query: 343 IFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSM 402
           ++  LL+ACR H+  +LAE AA  ++ L+P +A   YV L+N+Y+   +W DVAR+R SM
Sbjct: 313 VWKALLAACRTHRNAELAEHAAAMVWRLDPTDAVP-YVMLSNLYSRAGRWGDVARVRTSM 371

Query: 403 KENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFAL 462
           K   + K PG SW+    V H F   DR HP    ++ K++E+ +R++  GYV D  +AL
Sbjct: 372 KARGITKEPGCSWVAANGVTHLFYVEDRRHPRAAEVYRKVEEMTERIRGQGYVADTAWAL 431

Query: 463 HAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKRE 522
              G E +E+ L  HSE+LA+AFGL+ VP G PIRVFKNLRVCGDCH A K ++    RE
Sbjct: 432 QDEGPEGREKGLAHHSERLAVAFGLLAVPAGAPIRVFKNLRVCGDCHAAIKMVAQAYGRE 491

Query: 523 IIVRDTTRFHHFKDGTCSCGDYW 545
           I++RD+  FHH KDG CSCGDYW
Sbjct: 492 IVLRDSNCFHHMKDGACSCGDYW 514



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 59/266 (22%), Positives = 113/266 (42%), Gaps = 31/266 (11%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSD---------DVVAAF- 59
           N+++  +AK   +   A+ +FD++P+ DVVS+  +L+ +  +           D+VAA  
Sbjct: 78  NALVDAYAKL-SRHGAARAVFDEMPRRDVVSWTSLLTGLARSRSHDSALQVYRDMVAAGV 136

Query: 60  ---DFFQRLPIKDTASWNTMISG-FVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECG 115
              +F     +   A    +  G  V    +  A D FL++        ++++S Y + G
Sbjct: 137 GPDEFAVAAALSSCAGATALELGRSVHAAAVRLALDPFLSVG-------NSLVSMYAKTG 189

Query: 116 QLDKAVELFKVAPVKSV--VAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNAS 173
            L +A ++F    V     + WTA+I      GY +N    + L++   M+  G RP+  
Sbjct: 190 SLGEAKKVFDATRVDRCDPITWTALI-----VGYAQNGRGRESLEIYADMVRSGCRPDYV 244

Query: 174 SLSSVLLGCSHLSSLQLGK-QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF-L 231
           +   +L  CSH   +  G+     +  +  +         ++ +  + G L++A  L   
Sbjct: 245 TFIGLLFACSHAGLVDAGRAHFRSMQAEHGIAPGADHYACMVDLLGRAGRLDEAMDLLNR 304

Query: 232 EIQRKDVVTWNAMISGYAQHGKGEKA 257
              R D   W A+++    H   E A
Sbjct: 305 STTRLDATVWKALLAACRTHRNAELA 330



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 75/161 (46%), Gaps = 9/161 (5%)

Query: 133 VAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQL-G 191
           VA+ A IS   + G  + +     L LL  M   G R +  +L   L   +  + L+L  
Sbjct: 7   VAYNAAISRCSRAGLHQRA-----LALLHEMRARGHRADEYTLPPAL---NSAALLRLPA 58

Query: 192 KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQH 251
             +H L+ ++ L         L+  Y K      A  +F E+ R+DVV+W ++++G A+ 
Sbjct: 59  DALHSLLLRAGLAAHLHVANALVDAYAKLSRHGAARAVFDEMPRRDVVSWTSLLTGLARS 118

Query: 252 GKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 292
              + AL+++  M   G+ PD     A L +C  A  ++LG
Sbjct: 119 RSHDSALQVYRDMVAAGVGPDEFAVAAALSSCAGATALELG 159


>gi|242090555|ref|XP_002441110.1| hypothetical protein SORBIDRAFT_09g020580 [Sorghum bicolor]
 gi|241946395|gb|EES19540.1| hypothetical protein SORBIDRAFT_09g020580 [Sorghum bicolor]
          Length = 516

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 203/458 (44%), Positives = 281/458 (61%), Gaps = 7/458 (1%)

Query: 89  ARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYV 148
           AR +F ++  KN V W+A++SGY   G   +A++LF+  P + + AWTA+ISG++K G  
Sbjct: 65  ARKVFDSIGVKNGVVWTALVSGYASNGCTGEAIDLFRSMPERGLFAWTALISGFVKAG-- 122

Query: 149 ENSWAEDGLKLLRMMIGLGIR-PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDT 207
            N+ A   + L   M   G+R  +A  L++V+ G + L++L LG+Q+H            
Sbjct: 123 NNTGA---VGLFVEMRRDGVRIDDAFVLATVVGGAAELAALVLGRQLHGFAITLGFLSSM 179

Query: 208 TALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE 267
                L+ MY KC D+  A ++F  I  +DVV+W  ++ G AQHG+ E+ L L+D+M   
Sbjct: 180 IVGNALVDMYSKCSDIHSAREVFGGIIVRDVVSWTTILVGEAQHGRVEEVLALYDRMLLA 239

Query: 268 GMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVE 327
           GMKP+ +TFV L+ AC+HAGLV  G Q FDSM  +YGI     HYTC +DLL R+G L E
Sbjct: 240 GMKPNEVTFVGLIYACSHAGLVQKGRQLFDSMKREYGIKPGLQHYTCYLDLLSRSGYLSE 299

Query: 328 AVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYA 387
           A +LI  MP++P  A +G LLSAC+ H    +    A NL  L P + +  Y+ L+N+YA
Sbjct: 300 AEELITTMPYEPDEASWGALLSACKKHNDTQMCLRVADNLLELRPKDPS-TYILLSNVYA 358

Query: 388 AMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEK 447
              KWD VA++R  M E  + K PGYSWIE G     F +G+        I   L+EL  
Sbjct: 359 VNCKWDSVAKVRKIMAEMEIRKEPGYSWIEAGRESRMFHAGEVPLDIGEEITRFLEELVS 418

Query: 448 RMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGD 507
            M+  GYVPD    +H + E  KEQ L  HSE+LA+AFG++K P G+ IRV KNLRVCGD
Sbjct: 419 EMRKRGYVPDTSSVMHDLEENEKEQHLFLHSERLAVAFGILKSPPGSVIRVVKNLRVCGD 478

Query: 508 CHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           CH   K+IS I +R+IIVRD +RFHHF+DG CSC ++W
Sbjct: 479 CHTVMKFISEIAQRKIIVRDASRFHHFEDGNCSCSEFW 516



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 71/305 (23%), Positives = 129/305 (42%), Gaps = 57/305 (18%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G  +DA+++FD I   + V +  ++S    N      A D F+ +P +   +W  +ISGF
Sbjct: 60  GVPEDARKVFDSIGVKNGVVWTALVSGYASNGC-TGEAIDLFRSMPERGLFAWTALISGF 118

Query: 81  VQKKNMAKARDLFLAMPE----------------------------------------KN 100
           V+  N   A  LF+ M                                           +
Sbjct: 119 VKAGNNTGAVGLFVEMRRDGVRIDDAFVLATVVGGAAELAALVLGRQLHGFAITLGFLSS 178

Query: 101 SVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLL 160
            +  +A++  Y +C  +  A E+F    V+ VV+WT ++ G  + G VE       L L 
Sbjct: 179 MIVGNALVDMYSKCSDIHSAREVFGGIIVRDVVSWTTILVGEAQHGRVEEV-----LALY 233

Query: 161 RMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKS----PLCKDTTALTPLISM 216
             M+  G++PN  +   ++  CSH   +Q G+Q+   + +     P  +  T    L+S 
Sbjct: 234 DRMLLAGMKPNEVTFVGLIYACSHAGLVQKGRQLFDSMKREYGIKPGLQHYTCYLDLLS- 292

Query: 217 YCKCGDLEDACKLFLEIQRK-DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKP-DSI 274
             + G L +A +L   +  + D  +W A++S   +H   +  LR+ D + +  ++P D  
Sbjct: 293 --RSGYLSEAEELITTMPYEPDEASWGALLSACKKHNDTQMCLRVADNLLE--LRPKDPS 348

Query: 275 TFVAL 279
           T++ L
Sbjct: 349 TYILL 353



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 39/104 (37%), Positives = 56/104 (53%)

Query: 191 GKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQ 250
           G+Q+H     SP   D    + LI MYCKCG  EDA K+F  I  K+ V W A++SGYA 
Sbjct: 30  GRQLHAHFVASPYSADDVVKSSLIDMYCKCGVPEDARKVFDSIGVKNGVVWTALVSGYAS 89

Query: 251 HGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ 294
           +G   +A+ LF  M + G+   +      + A N+ G V L ++
Sbjct: 90  NGCTGEAIDLFRSMPERGLFAWTALISGFVKAGNNTGAVGLFVE 133


>gi|296089800|emb|CBI39619.3| unnamed protein product [Vitis vinifera]
          Length = 640

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 210/484 (43%), Positives = 289/484 (59%), Gaps = 13/484 (2%)

Query: 69  DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYI---ECGQLDKAVELFK 125
           D    NT+I+ +    NM  AR LF   P  +SVSW+++++GY+   + GQ+ +A +LF 
Sbjct: 163 DVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNSILAGYVKKGDMGQVMEAWKLFN 222

Query: 126 VAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHL 185
               K +V+W+A+ISGY      +N   E+ L +   M   G+R +   + SVL  C+HL
Sbjct: 223 EMDEKDMVSWSALISGYE-----QNGMYEEALVMFIEMNANGMRLDEVVVVSVLSACAHL 277

Query: 186 SSLQLGKQVHQLVFKSPLCKDTTALTPLISMYC----KCGDLEDACKLFLEIQRKDVVTW 241
           S ++ GK +H LV +  +         LI MY     KCG +E+A ++F  ++ K V +W
Sbjct: 278 SIVKTGKMIHGLVIRMGIESYVNLQNALIHMYSDMYMKCGCVENALEVFNGMEEKGVSSW 337

Query: 242 NAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN 301
           NA+I G A +G  E++L +F +MK+ G+ P+ ITF+ +L AC H GLVD G  +F SM+ 
Sbjct: 338 NALIIGLAVNGLVERSLDMFSEMKNNGVIPNEITFMGVLGACRHMGLVDEGRCHFASMIE 397

Query: 302 DYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAE 361
            +GI     HY CMVDLLGRAG L EA  LI+ MP  P  A +G LL AC+ H   ++ E
Sbjct: 398 KHGIEPNVKHYGCMVDLLGRAGLLNEAEKLIESMPMAPDVATWGALLGACKKHGDTEMGE 457

Query: 362 FAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTV 421
                L  L P +  G +V L+NI+A+   W+DV  +R  MK+  VVK PG S IE   V
Sbjct: 458 RVGRKLIELQP-DHDGFHVLLSNIFASKGDWEDVLEVRGMMKQQGVVKTPGCSLIEANGV 516

Query: 422 VHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKL 481
           VHEF +GD+ HP +  +   L E+ KR+K+ GY PD       + EE KE  L  HSEKL
Sbjct: 517 VHEFLAGDKTHPWINKVEGMLNEMAKRLKMEGYAPDTNEVSLDIDEEEKETTLFRHSEKL 576

Query: 482 AIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSC 541
           AIAFGL+ +   TPIR+ KNLR+C DCH A K IS    REI+VRD  RFH+FK+G CSC
Sbjct: 577 AIAFGLLTISPPTPIRIMKNLRICNDCHTAAKLISKAYAREIVVRDRHRFHYFKEGACSC 636

Query: 542 GDYW 545
            DYW
Sbjct: 637 MDYW 640



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 78/307 (25%), Positives = 129/307 (42%), Gaps = 54/307 (17%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSD--DVVAAFDFFQRLPIKDTASWNTMIS 78
           G ++DA++LFD+ P  D VS+N +L+  +   D   V+ A+  F  +  KD  SW+ +IS
Sbjct: 178 GNMRDARKLFDESPVLDSVSWNSILAGYVKKGDMGQVMEAWKLFNEMDEKDMVSWSALIS 237

Query: 79  GFVQKKNMAKARDLFLAMPEK-------------------NSVSWSAMISG--------- 110
           G+ Q     +A  +F+ M                      + V    MI G         
Sbjct: 238 GYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSACAHLSIVKTGKMIHGLVIRMGIES 297

Query: 111 ---------------YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAED 155
                          Y++CG ++ A+E+F     K V +W A+I G    G VE S    
Sbjct: 298 YVNLQNALIHMYSDMYMKCGCVENALEVFNGMEEKGVSSWNALIIGLAVNGLVERS---- 353

Query: 156 GLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGK-QVHQLVFKSPLCKDTTALTPLI 214
            L +   M   G+ PN  +   VL  C H+  +  G+     ++ K  +  +      ++
Sbjct: 354 -LDMFSEMKNNGVIPNEITFMGVLGACRHMGLVDEGRCHFASMIEKHGIEPNVKHYGCMV 412

Query: 215 SMYCKCGDLEDACKLFLEI-QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDS 273
            +  + G L +A KL   +    DV TW A++    +HG  E   R+  K+ +  ++PD 
Sbjct: 413 DLLGRAGLLNEAEKLIESMPMAPDVATWGALLGACKKHGDTEMGERVGRKLIE--LQPDH 470

Query: 274 ITFVALL 280
             F  LL
Sbjct: 471 DGFHVLL 477



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 59/211 (27%), Positives = 98/211 (46%), Gaps = 41/211 (19%)

Query: 117 LDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLS 176
           LD ++++F      +   W  M+  Y     ++++ AE  L L ++M+   + P+  +  
Sbjct: 79  LDYSLQIFDRIENSNGFMWNTMMRAY-----IQSNSAEKALLLYKLMVKNNVGPDNYTYP 133

Query: 177 SVLLGCSHLSSLQLG-KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLED---------- 225
            V+  C+ +  L+ G K++H  V K     D      LI+MY  CG++ D          
Sbjct: 134 LVVQACA-VRLLEFGGKEIHDHVLKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPV 192

Query: 226 ------------------------ACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLF 261
                                   A KLF E+  KD+V+W+A+ISGY Q+G  E+AL +F
Sbjct: 193 LDSVSWNSILAGYVKKGDMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMF 252

Query: 262 DKMKDEGMKPDSITFVALLLACNHAGLVDLG 292
            +M   GM+ D +  V++L AC H  +V  G
Sbjct: 253 IEMNANGMRLDEVVVVSVLSACAHLSIVKTG 283


>gi|356496056|ref|XP_003516886.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Glycine max]
          Length = 605

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 216/534 (40%), Positives = 313/534 (58%), Gaps = 16/534 (2%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAF----DFFQRLPIKDTASWNTM 76
           G ++ A  +F +I +P    YN M+   + NS D+  A     +  +R    D  ++  +
Sbjct: 79  GSMEYACSIFSQIEEPGSFEYNTMIRGNV-NSMDLEEALLLYVEMLERGIEPDNFTYPFV 137

Query: 77  ISG----FVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSV 132
           +         K+ +     +F A  E +    + +IS Y +CG ++ A  +F+    KSV
Sbjct: 138 LKACSLLVALKEGVQIHAHVFKAGLEVDVFVQNGLISMYGKCGAIEHAGVVFEQMDEKSV 197

Query: 133 VAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGI-RPNASSLSSVLLGCSHLSSLQLG 191
            +W+++I  +         W E  L LL  M G G  R   S L S L  C+HL S  LG
Sbjct: 198 ASWSSIIGAHASV----EMWHE-CLMLLGDMSGEGRHRAEESILVSALSACTHLGSPNLG 252

Query: 192 KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQH 251
           + +H ++ ++    +    T LI MY KCG LE    +F  +  K+  ++  MI+G A H
Sbjct: 253 RCIHGILLRNISELNVVVKTSLIDMYVKCGSLEKGLCVFQNMAHKNRYSYTVMIAGLAIH 312

Query: 252 GKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDH 311
           G+G +A+R+F  M +EG+ PD + +V +L AC+HAGLV+ G+Q F+ M  ++ I     H
Sbjct: 313 GRGREAVRVFSDMLEEGLTPDDVVYVGVLSACSHAGLVNEGLQCFNRMQFEHMIKPTIQH 372

Query: 312 YTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLN 371
           Y CMVDL+GRAG L EA DLIK MP KP   ++ +LLSAC+VH  L++ E AA N+F LN
Sbjct: 373 YGCMVDLMGRAGMLKEAYDLIKSMPIKPNDVVWRSLLSACKVHHNLEIGEIAAENIFRLN 432

Query: 372 PANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRV 431
             N  G Y+ LAN+YA  KKW +VARIR  M E ++V+ PG+S +E    V++F S D+ 
Sbjct: 433 KHNP-GDYLVLANMYARAKKWANVARIRTEMAEKHLVQTPGFSLVEANRNVYKFVSQDKS 491

Query: 432 HPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVP 491
            P   +I++ ++++E ++K  GY PD+   L  V E+ K Q L  HS+KLAIAF LI+  
Sbjct: 492 QPICETIYDMIQQMEWQLKFEGYTPDMSQVLLDVDEDEKRQRLKHHSQKLAIAFALIQTS 551

Query: 492 LGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
            G+PIR+ +NLR+C DCH  TK+IS I +REI VRD  RFHHFKDGTCSC DYW
Sbjct: 552 EGSPIRISRNLRMCNDCHTYTKFISVIYEREITVRDRNRFHHFKDGTCSCKDYW 605


>gi|242035229|ref|XP_002465009.1| hypothetical protein SORBIDRAFT_01g030410 [Sorghum bicolor]
 gi|241918863|gb|EER92007.1| hypothetical protein SORBIDRAFT_01g030410 [Sorghum bicolor]
          Length = 684

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 211/533 (39%), Positives = 311/533 (58%), Gaps = 16/533 (3%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G + DA  +FD +P+ D V+++ M++   +++   V A   + R+     A    ++ G 
Sbjct: 160 GAMGDAIRVFDGMPRKDHVAWSTMVAG-FVSAGRPVEALGMYSRMREHGVAEDEVVMVGV 218

Query: 81  VQKKNM-------AKARDLFLAMPEK-NSVSWSAMISGYIECGQLDKAVELFKVAPVKSV 132
           +Q   +       A     FL    + + V  ++++  Y + G  D A ++F++ P ++ 
Sbjct: 219 IQACTLTGNTRMGASVHGRFLRHGMRMDVVIATSLVDMYAKNGHFDVARQVFRMMPYRNA 278

Query: 133 VAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGK 192
           V+W A+ISG+      +N  A++ L L R M   G++P++ +L S LL C+ +  L+LGK
Sbjct: 279 VSWNALISGF-----AQNGHADEALDLFREMSTSGLQPDSGALVSALLACADVGFLKLGK 333

Query: 193 QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHG 252
            +H  + +  L       T ++ MY KCG LE A KLF ++  +D+V WNAMI+    HG
Sbjct: 334 SIHGFILRR-LEFQCILGTAVLDMYSKCGSLESARKLFNKLSSRDLVLWNAMIACCGTHG 392

Query: 253 KGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY 312
            G  AL LF ++ + G+KPD  TF +LL A +H+GLV+ G  +FD M+ ++GI     H 
Sbjct: 393 CGHDALALFQELNETGIKPDHATFASLLSALSHSGLVEEGKFWFDRMITEFGIEPTEKHC 452

Query: 313 TCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNP 372
            C+VDLL R+G + EA +++  M  +P   I+  LLS C  +K+L+L E  A  +    P
Sbjct: 453 VCVVDLLARSGLVEEANEMLASMHTEPTIPIWVALLSGCLNNKKLELGETIAKKILESQP 512

Query: 373 ANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVH 432
            +  G    ++N+YAA KKWD V  IR  MK++   K+PGYS IEV    H F   D+ H
Sbjct: 513 EDI-GVLALVSNLYAAAKKWDKVREIRKLMKDSGSKKVPGYSLIEVHGTRHAFVMEDQSH 571

Query: 433 PELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPL 492
           P+   I + + +L   M+  GYVP  EF  H + E+VKEQLL +HSE+LAIAFGL+    
Sbjct: 572 PQHQEILKMISKLSFEMRKMGYVPRTEFVYHDLDEDVKEQLLSYHSERLAIAFGLLNTSP 631

Query: 493 GTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           GT + + KNLRVCGDCH A KYIS I  REI+VRD  RFHHFKDG CSCGDYW
Sbjct: 632 GTRLVIIKNLRVCGDCHDAIKYISKIVDREIVVRDAKRFHHFKDGACSCGDYW 684



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 94/378 (24%), Positives = 166/378 (43%), Gaps = 54/378 (14%)

Query: 9   WNSVLAGFAKQRGKLKDAQELFDKIP---QPDVVSYNIMLS-CILLNSDDVVAAFDFFQR 64
           WN++LA  ++  G    A  +F  +P   +PD  ++ + L+ C  L   D   A      
Sbjct: 80  WNALLAARSRA-GSPGAALRVFRALPSSARPDSTTFTLALTACARLGDLDAAEAVRV--- 135

Query: 65  LPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELF 124
                        +G+         RD+F+          SA++  Y  CG +  A+ +F
Sbjct: 136 ---------RAFAAGY--------GRDVFVC---------SALLHVYSRCGAMGDAIRVF 169

Query: 125 KVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSH 184
              P K  VAW+ M++G++  G        + L +   M   G+  +   +  V+  C+ 
Sbjct: 170 DGMPRKDHVAWSTMVAGFVSAGR-----PVEALGMYSRMREHGVAEDEVVMVGVIQACTL 224

Query: 185 LSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAM 244
             + ++G  VH    +  +  D    T L+ MY K G  + A ++F  +  ++ V+WNA+
Sbjct: 225 TGNTRMGASVHGRFLRHGMRMDVVIATSLVDMYAKNGHFDVARQVFRMMPYRNAVSWNAL 284

Query: 245 ISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYG 304
           ISG+AQ+G  ++AL LF +M   G++PDS   V+ LLAC   G + LG          +G
Sbjct: 285 ISGFAQNGHADEALDLFREMSTSGLQPDSGALVSALLACADVGFLKLGKSI-------HG 337

Query: 305 IAAKPDHYTCM-----VDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVH--KRL 357
              +   + C+     +D+  + G L  A  L  K+  +    ++  +++ C  H     
Sbjct: 338 FILRRLEFQCILGTAVLDMYSKCGSLESARKLFNKLSSR-DLVLWNAMIACCGTHGCGHD 396

Query: 358 DLAEFAAMNLFNLNPANA 375
            LA F  +N   + P +A
Sbjct: 397 ALALFQELNETGIKPDHA 414



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 63/278 (22%), Positives = 124/278 (44%), Gaps = 14/278 (5%)

Query: 104 WSAMISGYIECGQLDKAVELFKVAPVKS--VVAWTAMISGYMKFGYVENSWAEDGLKLLR 161
           + ++ + Y   G LD A      +P     + AW A+++   + G    +     L++ R
Sbjct: 47  FPSLAAAYARVGALDAAESTLAASPSSRSCIPAWNALLAARSRAGSPGAA-----LRVFR 101

Query: 162 MMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCG 221
            +     RP++++ +  L  C+ L  L   + V    F +   +D    + L+ +Y +CG
Sbjct: 102 ALPS-SARPDSTTFTLALTACARLGDLDAAEAVRVRAFAAGYGRDVFVCSALLHVYSRCG 160

Query: 222 DLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLL 281
            + DA ++F  + RKD V W+ M++G+   G+  +AL ++ +M++ G+  D +  V ++ 
Sbjct: 161 AMGDAIRVFDGMPRKDHVAWSTMVAGFVSAGRPVEALGMYSRMREHGVAEDEVVMVGVIQ 220

Query: 282 ACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQ- 340
           AC   G   +G       +  +G+       T +VD+  + G    A  + + MP++   
Sbjct: 221 ACTLTGNTRMGASVHGRFLR-HGMRMDVVIATSLVDMYAKNGHFDVARQVFRMMPYRNAV 279

Query: 341 --PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAA 376
              A+           + LDL  F  M+   L P + A
Sbjct: 280 SWNALISGFAQNGHADEALDL--FREMSTSGLQPDSGA 315



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 63/282 (22%), Positives = 125/282 (44%), Gaps = 35/282 (12%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  +  V+WN++++GFA Q G   +A +LF ++    +   +  L   LL   DV     
Sbjct: 273 MPYRNAVSWNALISGFA-QNGHADEALDLFREMSTSGLQPDSGALVSALLACADV----- 326

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
            F +L           I GF+ ++             E   +  +A++  Y +CG L+ A
Sbjct: 327 GFLKL--------GKSIHGFILRR------------LEFQCILGTAVLDMYSKCGSLESA 366

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLL 180
            +LF     + +V W AMI+     G        D L L + +   GI+P+ ++ +S+L 
Sbjct: 367 RKLFNKLSSRDLVLWNAMIACCGTHG-----CGHDALALFQELNETGIKPDHATFASLLS 421

Query: 181 GCSHLSSLQLGK-QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVV 239
             SH   ++ GK    +++ +  +         ++ +  + G +E+A ++   +  +  +
Sbjct: 422 ALSHSGLVEEGKFWFDRMITEFGIEPTEKHCVCVVDLLARSGLVEEANEMLASMHTEPTI 481

Query: 240 -TWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 280
             W A++SG   + K E    +  K+ +   +P+ I  +AL+
Sbjct: 482 PIWVALLSGCLNNKKLELGETIAKKILES--QPEDIGVLALV 521


>gi|356561762|ref|XP_003549147.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g66520-like [Glycine max]
          Length = 622

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 217/570 (38%), Positives = 323/570 (56%), Gaps = 57/570 (10%)

Query: 23  LKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRL-------PIKDTASW-- 73
           L  A +LFD+IPQPD+  YN M+    L+      +   F+ L       P + +  +  
Sbjct: 63  LSYAHKLFDQIPQPDLFIYNTMIKAHSLSPHSCHNSLIVFRSLTQDLGLFPNRYSFVFAF 122

Query: 74  -------------------------------NTMISGFVQKKNMAKARDLFLAMPEKNSV 102
                                          N +I  + +   + +++ +F    +++  
Sbjct: 123 SACGNGLGVQEGEQVRIHAVKVGLENNVFVVNALIGMYGKWGLVGESQKVFQWAVDRDLY 182

Query: 103 SWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRM 162
           SW+ +I+ Y+  G +  A ELF     + VV+W+ +I+GY++ G        + L     
Sbjct: 183 SWNTLIAAYVGSGNMSLAKELFDGMRERDVVSWSTIIAGYVQVGCFM-----EALDFFHK 237

Query: 163 MIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGD 222
           M+ +G +PN  +L S L  CS+L +L  GK +H  + K  +  +   L  +I MY KCG+
Sbjct: 238 MLQIGPKPNEYTLVSALAACSNLVALDQGKWIHAYIGKGEIKMNERLLASIIDMYAKCGE 297

Query: 223 LEDACKLFLEIQ-RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLL 281
           +E A ++F E + ++ V  WNAMI G+A HG   +A+ +F++MK E + P+ +TF+ALL 
Sbjct: 298 IESASRVFFEHKVKQKVWLWNAMIGGFAMHGMPNEAINVFEQMKVEKISPNKVTFIALLN 357

Query: 282 ACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQP 341
           AC+H  +V+ G  YF  MV+DY I  + +HY CMVDLL R+G L EA D+I  MP  P  
Sbjct: 358 ACSHGYMVEEGKLYFRLMVSDYAITPEIEHYGCMVDLLSRSGLLKEAEDMISSMPMAPDV 417

Query: 342 AIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLS 401
           AI+G LL+ACR++K ++        +  ++P N  GC+V L+NIY+   +W++ ARI   
Sbjct: 418 AIWGALLNACRIYKDMERGYRIGRIIKGMDP-NHIGCHVLLSNIYSTSGRWNE-ARI--- 472

Query: 402 MKENNVV-----KMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVP 456
           ++E N +     K+PG S IE+    H+F  GD+ HP+   I+  L E+  ++K AGYVP
Sbjct: 473 LREKNEISRDRKKIPGCSSIELKGTFHQFLVGDQSHPQSREIYSFLDEMTTKLKSAGYVP 532

Query: 457 DLEFALHAV-GEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYI 515
           +L   LH +  EE KE  L  HSEKLAIAFGL+    GTPIR+ KNLRVCGDCH+ATK+I
Sbjct: 533 ELGELLHDIDDEEDKETALSVHSEKLAIAFGLMNTANGTPIRIVKNLRVCGDCHQATKFI 592

Query: 516 SAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           S +  R IIVRD TR+HHF+DG CSC DYW
Sbjct: 593 SKVYNRVIIVRDRTRYHHFEDGICSCKDYW 622



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 76/318 (23%), Positives = 129/318 (40%), Gaps = 62/318 (19%)

Query: 11  SVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDT 70
           + L G   + G + ++Q++F      D+ S+N +++   + S ++  A + F  +  +D 
Sbjct: 154 NALIGMYGKWGLVGESQKVFQWAVDRDLYSWNTLIAA-YVGSGNMSLAKELFDGMRERDV 212

Query: 71  ASWNTMISGFVQKKNMAKARDLFLAM----PEKNSVS------------------W---- 104
            SW+T+I+G+VQ     +A D F  M    P+ N  +                  W    
Sbjct: 213 VSWSTIIAGYVQVGCFMEALDFFHKMLQIGPKPNEYTLVSALAACSNLVALDQGKWIHAY 272

Query: 105 -------------SAMISGYIECGQLDKAVELFKVAPVKSVV-AWTAMISGYMKFGYVEN 150
                        +++I  Y +CG+++ A  +F    VK  V  W AMI G+   G    
Sbjct: 273 IGKGEIKMNERLLASIIDMYAKCGEIESASRVFFEHKVKQKVWLWNAMIGGFAMHGM--- 329

Query: 151 SWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTAL 210
               + + +   M    I PN  +  ++L  CSH   ++ GK    L F+  L     A+
Sbjct: 330 --PNEAINVFEQMKVEKISPNKVTFIALLNACSHGYMVEEGK----LYFR--LMVSDYAI 381

Query: 211 TPLISMYCKCGDLEDACKLFLEIQ--------RKDVVTWNAMISGYAQHGKGEKALRLFD 262
           TP I  Y    DL     L  E +          DV  W A+++    +   E+  R+  
Sbjct: 382 TPEIEHYGCMVDLLSRSGLLKEAEDMISSMPMAPDVAIWGALLNACRIYKDMERGYRIGR 441

Query: 263 KMKDEGMKPDSITFVALL 280
            +K  GM P+ I    LL
Sbjct: 442 IIK--GMDPNHIGCHVLL 457



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 54/214 (25%), Positives = 89/214 (41%), Gaps = 13/214 (6%)

Query: 114 CGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI-GLGIRPNA 172
           C  L  A +LF   P   +  +  MI  +     +      + L + R +   LG+ PN 
Sbjct: 60  CASLSYAHKLFDQIPQPDLFIYNTMIKAHS----LSPHSCHNSLIVFRSLTQDLGLFPNR 115

Query: 173 SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLE 232
            S       C +   +Q G+QV     K  L  +   +  LI MY K G + ++ K+F  
Sbjct: 116 YSFVFAFSACGNGLGVQEGEQVRIHAVKVGLENNVFVVNALIGMYGKWGLVGESQKVFQW 175

Query: 233 IQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 292
              +D+ +WN +I+ Y   G    A  LFD M++     D +++  ++      G     
Sbjct: 176 AVDRDLYSWNTLIAAYVGSGNMSLAKELFDGMRER----DVVSWSTIIAGYVQVGCFMEA 231

Query: 293 IQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLV 326
           + +F  M+    I  KP+ YT +V  L     LV
Sbjct: 232 LDFFHKMLQ---IGPKPNEYT-LVSALAACSNLV 261


>gi|449496903|ref|XP_004160258.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 583

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 210/552 (38%), Positives = 314/552 (56%), Gaps = 48/552 (8%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDV------VSYNIMLSCILLNSDD 54
           ++     +WN+ L  FA+      DA  LF ++ + D+       S+ +     LL+  +
Sbjct: 73  LDASEVTHWNTCLRSFAEGDSP-ADAISLFYRLREFDISPDHYTCSFVLKACSRLLDVRN 131

Query: 55  VVAAFDFFQRLPIKDTASWNTMISG-FVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE 113
                 + ++L ++       MI   +     +  AR +F  MP+++ ++W+ MI+  ++
Sbjct: 132 GKIVHGYVEKLGLQSNMFLQNMIVHLYALCGEIGVARKVFDKMPQRDVITWNIMIARLVK 191

Query: 114 CGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNAS 173
            G  + A +LF   P ++V +WT+MI GY + G      +++ + L   M   G+ PN  
Sbjct: 192 MGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGK-----SKEAIDLFLEMEDAGLLPNEV 246

Query: 174 SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI 233
           ++ +VL+ C+ + +L LG+++H    +S   K+      LI MY KCG LEDAC++F  +
Sbjct: 247 TVVAVLVACADMGNLVLGRRIHDFSNRSGYEKNIRVCNTLIDMYVKCGCLEDACRIFDNM 306

Query: 234 QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGI 293
           + + VV+W+AMI+G A HG+ E AL LF+KM + G+KP+++TF+ +L AC+H G+V+ G 
Sbjct: 307 EERTVVSWSAMIAGLAAHGRAEDALALFNKMINTGVKPNAVTFIGILHACSHMGMVEKGR 366

Query: 294 QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRV 353
           +YF SM  DYGI  + +HY CMVDL  RAG L EA + I  MP  P   ++G LL  C+V
Sbjct: 367 KYFASMTRDYGIVPRIEHYGCMVDLFSRAGLLQEAHEFIMNMPIAPNGVVWGALLGGCKV 426

Query: 354 HKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGY 413
           HK + LAE A  +L  L+P N  G YV L+NIYA   +W+DVAR+R  M++         
Sbjct: 427 HKNVKLAEEATRHLSKLDPLN-DGYYVVLSNIYAEAGRWEDVARVRKLMRDRG------- 478

Query: 414 SWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQL 473
           +W                           ++L +RMKL GYVP+    L  + E+ KE+ 
Sbjct: 479 TW---------------------------EKLLQRMKLKGYVPNTSVVLLDMEEDQKEKF 511

Query: 474 LLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHH 533
           L  HSEKLA+ FGLIK   GT IR+ KNLRVC DCH A K IS +  REI+VRD  RFH 
Sbjct: 512 LYRHSEKLAVVFGLIKTTPGTVIRIMKNLRVCEDCHAALKIISVVSTREIVVRDRNRFHC 571

Query: 534 FKDGTCSCGDYW 545
           FK+G+CSCGDYW
Sbjct: 572 FKNGSCSCGDYW 583


>gi|115483184|ref|NP_001065185.1| Os10g0540100 [Oryza sativa Japonica Group]
 gi|78708963|gb|ABB47938.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
 gi|113639794|dbj|BAF27099.1| Os10g0540100 [Oryza sativa Japonica Group]
 gi|125575555|gb|EAZ16839.1| hypothetical protein OsJ_32311 [Oryza sativa Japonica Group]
 gi|215704329|dbj|BAG93763.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 681

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 211/527 (40%), Positives = 297/527 (56%), Gaps = 46/527 (8%)

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK------------------ 99
           A   F R+P +D  +W+TM++GFV       A  ++  M E                   
Sbjct: 162 AVKVFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDGVKGDEVVMIGVIQACTA 221

Query: 100 ---------------------NSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAM 138
                                + V+ ++++  Y + G LD A  +F +   ++ V+W+AM
Sbjct: 222 ARNVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSWSAM 281

Query: 139 ISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLV 198
           ISG+      +N  +++ L+L R M   GI+P++ +L S LL CS++  L+LG+ VH  +
Sbjct: 282 ISGF-----AQNGQSDEALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGRSVHGFI 336

Query: 199 FKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKAL 258
            +     +    T  I MY KCG L  A  LF  I  +D++ WNAMI+    HG+G+ AL
Sbjct: 337 VRR-FDFNCILGTAAIDMYSKCGSLASAQMLFNMISDRDLILWNAMIACCGAHGRGQDAL 395

Query: 259 RLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDL 318
            LF +M + GM+PD  TF +LL A +H+GLV+ G  +F  MVN + I     HY C+VDL
Sbjct: 396 TLFQEMNETGMRPDHATFASLLSALSHSGLVEEGKLWFGRMVNHFKITPAEKHYVCLVDL 455

Query: 319 LGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGC 378
           L R+G + EA DL+  M  +P  AI+  LLS C  +K+L+L E  A N+  L P +  G 
Sbjct: 456 LARSGLVEEASDLLTSMKAEPTVAIWVALLSGCLNNKKLELGESIADNILELQPDDV-GV 514

Query: 379 YVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSI 438
              ++N+YAA KKWD V ++R  MK++   KMPG S IE+    H F   D+ HP+   I
Sbjct: 515 LALVSNLYAATKKWDKVRQVRKLMKDSGSKKMPGCSSIEIRGTRHVFVMEDQSHPQREEI 574

Query: 439 HEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRV 498
             K+ +L+  M+  GY+P  EF  H + EEVKEQ L +HSE+LAIAFGL+    GT + +
Sbjct: 575 VSKVAKLDLEMRKMGYIPRTEFVYHDLEEEVKEQQLSYHSERLAIAFGLLNTGPGTRLVI 634

Query: 499 FKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
            KNLRVCGDCH A KYIS I  REI+VRD  RFHHFKDG CSC DYW
Sbjct: 635 IKNLRVCGDCHDAIKYISKIADREIVVRDAKRFHHFKDGVCSCRDYW 681



 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 85/157 (54%), Gaps = 1/157 (0%)

Query: 169 RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK 228
           RP++++ +  L  C+ L  L+ G+ V    F +    D    + L+ +Y + G + DA K
Sbjct: 105 RPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDDVFVCSSLLHLYARWGAMGDAVK 164

Query: 229 LFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGL 288
           +F+ + R+D VTW+ M++G+   G+   A++++ +M+++G+K D +  + ++ AC  A  
Sbjct: 165 VFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDGVKGDEVVMIGVIQACTAARN 224

Query: 289 VDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKL 325
           V +G      ++  +G+       T +VD+  + G L
Sbjct: 225 VRMGASVHGHLLR-HGMRMDVVTATSLVDMYAKNGLL 260


>gi|38606535|emb|CAE06013.3| OSJNBa0016O02.23 [Oryza sativa Japonica Group]
 gi|116310014|emb|CAH67039.1| OSIGBa0124N08.1 [Oryza sativa Indica Group]
 gi|116310420|emb|CAH67428.1| OSIGBa0150F01.8 [Oryza sativa Indica Group]
          Length = 939

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 204/524 (38%), Positives = 294/524 (56%), Gaps = 47/524 (8%)

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISG----------- 110
           F R+ IKD  SW T+I+ + Q    ++A   F    +K  +    M+ G           
Sbjct: 423 FDRMRIKDHVSWTTIIACYAQSSRYSEAIGKF-RTAQKEGIKVDPMMMGSILEACSGLKS 481

Query: 111 ----------------------------YIECGQLDKAVELFKVAPVKSVVAWTAMISGY 142
                                       Y ECG++  A+ +F++   K +V WT+M++ +
Sbjct: 482 ISLLKQVHSYAIRNGLLDLILKNRIIDIYGECGEVCYALNIFEMLDKKDIVTWTSMVNCF 541

Query: 143 MKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSP 202
                 EN    + + L   M+  GI+P++ +L  +L   + LSSL  GK++H  + +  
Sbjct: 542 -----AENGLLHEAVALFGKMLNAGIQPDSVALVGILGAIAGLSSLTKGKEIHGFLIRGK 596

Query: 203 LCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFD 262
              +   ++ L+ MY  CG +  A K+F E + KDVV W AMI+    HG G++A+ +F 
Sbjct: 597 FPVEGAVVSSLVDMYSGCGSMNYALKVFDEAKCKDVVLWTAMINATGMHGHGKQAIYIFK 656

Query: 263 KMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRA 322
           +M + G+ PD ++F+ALL AC+H+ LVD G  Y D MV+ Y +    +HY C+VDLLGR+
Sbjct: 657 RMLETGVSPDHVSFLALLYACSHSKLVDEGKFYLDMMVSKYKLQPWQEHYACVVDLLGRS 716

Query: 323 GKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQL 382
           G+  EA   IK MP +P+  ++  LL ACR+HK  +LA  A   L  L P N  G YV +
Sbjct: 717 GQTEEAYKFIKSMPLEPKSVVWCALLGACRIHKNHELAMIATDKLLELEPDN-PGNYVLV 775

Query: 383 ANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKL 442
           +N++A M KW++V  IR  M E  + K P  SWIE+G  VH F + D  H +  +IH KL
Sbjct: 776 SNVFAEMGKWNNVKEIRTKMTEQGLRKDPACSWIEIGNTVHTFTARDHSHRDSQAIHLKL 835

Query: 443 KELEKRMKLAG-YVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKN 501
            E+ ++++  G YV D  F LH V EE K  LL  HSE+LAI+FGLI    GTP+R+ KN
Sbjct: 836 AEITEKLRREGQYVEDTSFVLHDVSEEEKIDLLHRHSERLAISFGLISTASGTPLRIAKN 895

Query: 502 LRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           LRVCGDCH  TK +S + +REI+VRD  RFHHF  GTCSCGD+W
Sbjct: 896 LRVCGDCHEFTKLVSKLFEREIVVRDANRFHHFSGGTCSCGDFW 939



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 97/372 (26%), Positives = 172/372 (46%), Gaps = 50/372 (13%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQP-DVVSYNIMLSCILLNSDDVVAAFDFF 62
           ++T+  N+++  +AK  G L  A  +F+ +    DV S+N  +S  + N    + A D F
Sbjct: 196 RSTLVANALVGMYAKC-GLLDSALRVFEWMRDGRDVASWNSAISGCVQNGM-FLEALDLF 253

Query: 63  QRLPIKDTASWNTMIS-GFVQK----KNMAKARDLFLAMPEKNS---VSWSAMISGYIEC 114
           +R+   D  S N+  + G +Q       +   R+L  A+ +  +   +  +A++  Y  C
Sbjct: 254 RRMQ-SDGFSMNSYTTVGVLQVCAELAQLNHGRELHAALLKCGTEFNIQCNALLVMYARC 312

Query: 115 GQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASS 174
           G +D A+ +F+    K  ++W +M+S Y     V+N    + +     M+  G  P+ + 
Sbjct: 313 GWVDSALRVFREIGDKDYISWNSMLSCY-----VQNRLYAEAIDFFGEMVQNGFNPDHAC 367

Query: 175 LSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ 234
           + S+L    HL  L  G++VH    K  L  D      L+ MY KC  +E + ++F  ++
Sbjct: 368 IVSLLSAVGHLGRLINGREVHAYAVKQRLDSDLQIANTLMDMYIKCYSVECSARVFDRMR 427

Query: 235 RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN---------- 284
            KD V+W  +I+ YAQ  +  +A+  F   + EG+K D +   ++L AC+          
Sbjct: 428 IKDHVSWTTIIACYAQSSRYSEAIGKFRTAQKEGIKVDPMMMGSILEACSGLKSISLLKQ 487

Query: 285 ------HAGLVDLGIQYFDSMVNDYG-------------IAAKPD--HYTCMVDLLGRAG 323
                   GL+DL ++  + +++ YG             +  K D   +T MV+     G
Sbjct: 488 VHSYAIRNGLLDLILK--NRIIDIYGECGEVCYALNIFEMLDKKDIVTWTSMVNCFAENG 545

Query: 324 KLVEAVDLIKKM 335
            L EAV L  KM
Sbjct: 546 LLHEAVALFGKM 557



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 81/278 (29%), Positives = 123/278 (44%), Gaps = 44/278 (15%)

Query: 111 YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIG----L 166
           Y +CG+L  A  LF   P ++V +W A+I   +  G      A + + + R M       
Sbjct: 103 YGKCGRLPDAHRLFDGMPARTVFSWNALIGACLSSG-----GAGEAVGVYRAMRASEPVA 157

Query: 167 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 226
           G  P+  +L+SVL  C      + G +VH L  KS L + T     L+ MY KCG L+ A
Sbjct: 158 GAAPDGCTLASVLKACGAEGDGRCGSEVHGLAVKSGLDRSTLVANALVGMYAKCGLLDSA 217

Query: 227 CKLFLEIQR--KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 284
            ++F E  R  +DV +WN+ ISG  Q+G   +AL LF +M+ +G   +S T V +L  C 
Sbjct: 218 LRVF-EWMRDGRDVASWNSAISGCVQNGMFLEALDLFRRMQSDGFSMNSYTTVGVLQVCA 276

Query: 285 -----------HAGLVDLGIQY----------------FDSMVNDYGIAAKPDH--YTCM 315
                      HA L+  G ++                 DS +  +      D+  +  M
Sbjct: 277 ELAQLNHGRELHAALLKCGTEFNIQCNALLVMYARCGWVDSALRVFREIGDKDYISWNSM 336

Query: 316 VDLLGRAGKLVEAVDLIKKM---PFKPQPAIFGTLLSA 350
           +    +     EA+D   +M    F P  A   +LLSA
Sbjct: 337 LSCYVQNRLYAEAIDFFGEMVQNGFNPDHACIVSLLSA 374



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 52/202 (25%), Positives = 85/202 (42%), Gaps = 20/202 (9%)

Query: 191 GKQVHQLVFKSPLCKDTTA---LTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISG 247
           G+Q+H     +    D  A    T L+ MY KCG L DA +LF  +  + V +WNA+I  
Sbjct: 74  GRQLHAHAVATGALGDDDAGFLATKLLFMYGKCGRLPDAHRLFDGMPARTVFSWNALIGA 133

Query: 248 YAQHGKGEKALRLFDKMKDE----GMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDY 303
               G   +A+ ++  M+      G  PD  T  ++L AC   G    G     S V+  
Sbjct: 134 CLSSGGAGEAVGVYRAMRASEPVAGAAPDGCTLASVLKACGAEGDGRCG-----SEVHGL 188

Query: 304 GIAAKPDHYT----CMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVH----K 355
            + +  D  T     +V +  + G L  A+ + + M      A + + +S C  +    +
Sbjct: 189 AVKSGLDRSTLVANALVGMYAKCGLLDSALRVFEWMRDGRDVASWNSAISGCVQNGMFLE 248

Query: 356 RLDLAEFAAMNLFNLNPANAAG 377
            LDL      + F++N     G
Sbjct: 249 ALDLFRRMQSDGFSMNSYTTVG 270


>gi|15220333|ref|NP_171976.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75192500|sp|Q9MAT2.1|PPR10_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g04840
 gi|7211995|gb|AAF40466.1|AC004809_24 F13M7.17 [Arabidopsis thaliana]
 gi|332189629|gb|AEE27750.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 665

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 196/492 (39%), Positives = 297/492 (60%), Gaps = 10/492 (2%)

Query: 58  AFDFFQRLP--IKDTAS--WNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE 113
           AF  F+  P  IK  +   WN +I+G+ + K+M  A  LF +MPE+NS SWS +I GY++
Sbjct: 180 AFQVFEESPDRIKKESILIWNVLINGYCRAKDMHMATTLFRSMPERNSGSWSTLIKGYVD 239

Query: 114 CGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNAS 173
            G+L++A +LF++ P K+VV+WT +I+G+ + G  E +     +     M+  G++PN  
Sbjct: 240 SGELNRAKQLFELMPEKNVVSWTTLINGFSQTGDYETA-----ISTYFEMLEKGLKPNEY 294

Query: 174 SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI 233
           ++++VL  CS   +L  G ++H  +  + +  D    T L+ MY KCG+L+ A  +F  +
Sbjct: 295 TIAAVLSACSKSGALGSGIRIHGYILDNGIKLDRAIGTALVDMYAKCGELDCAATVFSNM 354

Query: 234 QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGI 293
             KD+++W AMI G+A HG+  +A++ F +M   G KPD + F+A+L AC ++  VDLG+
Sbjct: 355 NHKDILSWTAMIQGWAVHGRFHQAIQCFRQMMYSGEKPDEVVFLAVLTACLNSSEVDLGL 414

Query: 294 QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRV 353
            +FDSM  DY I     HY  +VDLLGRAGKL EA +L++ MP  P    +  L  AC+ 
Sbjct: 415 NFFDSMRLDYAIEPTLKHYVLVVDLLGRAGKLNEAHELVENMPINPDLTTWAALYRACKA 474

Query: 354 HKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGY 413
           HK    AE  + NL  L+P    G Y+ L   +A+     DV + RLS+++    +  G+
Sbjct: 475 HKGYRRAESVSQNLLELDP-ELCGSYIFLDKTHASKGNIQDVEKRRLSLQKRIKERSLGW 533

Query: 414 SWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQL 473
           S+IE+   +++F +GD  H     I  KL E+       GY P  ++++H + EE KE +
Sbjct: 534 SYIELDGQLNKFSAGDYSHKLTQEIGLKLDEIISLAIQKGYNPGADWSIHDIEEEEKENV 593

Query: 474 LLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHH 533
              HSEKLA+  G ++   GT IR+ KNLR+CGDCH   KY+S I +R+I++RD  +FHH
Sbjct: 594 TGIHSEKLALTLGFLRTAPGTTIRIIKNLRICGDCHSLMKYVSKISQRDILLRDARQFHH 653

Query: 534 FKDGTCSCGDYW 545
           FKDG CSCGDYW
Sbjct: 654 FKDGRCSCGDYW 665



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 63/279 (22%), Positives = 124/279 (44%), Gaps = 26/279 (9%)

Query: 84  KNMAKARDLFLAMPEKNSVSWSAMISGYIECGQL----DKAVELFKVAPVKSVVAWTAMI 139
           K+ A  R +   +  +  +S S + +  + C  L    D ++ +F+ +  ++     A+I
Sbjct: 40  KDTASLRHVHAQILRRGVLS-SRVAAQLVSCSSLLKSPDYSLSIFRNSEERNPFVLNALI 98

Query: 140 SGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVF 199
            G       EN+  E  ++   +M+ LG++P+  +   VL   S L    LG+ +H    
Sbjct: 99  RGL-----TENARFESSVRHFILMLRLGVKPDRLTFPFVLKSNSKLGFRWLGRALHAATL 153

Query: 200 KSPLCKDTTALTPLISMYCKCGDLEDACKLFLE----IQRKDVVTWNAMISGYAQHGKGE 255
           K+ +  D+     L+ MY K G L+ A ++F E    I+++ ++ WN +I+GY +     
Sbjct: 154 KNFVDCDSFVRLSLVDMYAKTGQLKHAFQVFEESPDRIKKESILIWNVLINGYCRAKDMH 213

Query: 256 KALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCM 315
            A  LF  M +     +S ++  L+     +G ++   Q F+ M     ++     +T +
Sbjct: 214 MATTLFRSMPER----NSGSWSTLIKGYVDSGELNRAKQLFELMPEKNVVS-----WTTL 264

Query: 316 VDLLGRAGKLVEAVDLIKKM---PFKPQPAIFGTLLSAC 351
           ++   + G    A+    +M     KP       +LSAC
Sbjct: 265 INGFSQTGDYETAISTYFEMLEKGLKPNEYTIAAVLSAC 303


>gi|449469094|ref|XP_004152256.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Cucumis sativus]
          Length = 611

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 202/484 (41%), Positives = 298/484 (61%), Gaps = 18/484 (3%)

Query: 69  DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAP 128
           D    +++I  + +      AR +F ++  KNSVSW++MISGY   G+  +A++LF  AP
Sbjct: 139 DEVVKSSLIDMYTKCGQPDDARAVFDSILFKNSVSWTSMISGYARSGRKCEAMDLFLQAP 198

Query: 129 VKSVVAWTAMISGYMKFGY------VENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGC 182
           V+++ +WTA+ISG ++ G+      + N    +G+ ++  ++          LSSV+ GC
Sbjct: 199 VRNLFSWTALISGLIQSGHGIYSFSLFNEMRREGIDIVDPLV----------LSSVVGGC 248

Query: 183 SHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWN 242
           ++L+ L+LGKQ+H LV              L+ MY KC D+  A  +F  + RKDV++W 
Sbjct: 249 ANLALLELGKQIHGLVIALGFESCLFISNALVDMYAKCSDILAAKDIFYRMPRKDVISWT 308

Query: 243 AMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVND 302
           ++I G AQHGK E+AL L+D+M    +KP+ +TFV LL AC+HAGLV  G + F SM  D
Sbjct: 309 SIIVGTAQHGKAEEALTLYDEMVLSRIKPNEVTFVGLLYACSHAGLVSRGRELFRSMTTD 368

Query: 303 YGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEF 362
           Y I     HYTC++DLL R+G L EA +L+ K+PFKP    + +LLSAC  H  L++   
Sbjct: 369 YSINPSLQHYTCLLDLLSRSGHLDEAENLLDKIPFKPDEPTWASLLSACMRHNNLEMGVR 428

Query: 363 AAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVV 422
            A  + +L P + +  Y+ L+N+YA  + W  V+++R  M    V K PGYS I+ G   
Sbjct: 429 IADRVLDLKPEDPS-TYILLSNVYAGAEMWGSVSKVRKLMSSMEVRKEPGYSSIDFGKDS 487

Query: 423 HEFRSGDRV-HPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKL 481
             F +G+   HP    I   LK+L+  M+  GYVP+  F L+ + ++ KE+ L +HSE+L
Sbjct: 488 QVFHAGESCDHPMKNEICNLLKDLDAEMRKRGYVPNTSFVLYDIEQQEKEKQLFWHSERL 547

Query: 482 AIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSC 541
           A+A+GL+K   GT IR+ KNLR+CGDCH   K+IS I KREI+VRD TR+HHFK+G CSC
Sbjct: 548 AVAYGLLKAVPGTIIRIVKNLRICGDCHNVLKFISDIVKREIMVRDATRYHHFKEGKCSC 607

Query: 542 GDYW 545
            D+W
Sbjct: 608 NDFW 611



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 72/273 (26%), Positives = 126/273 (46%), Gaps = 37/273 (13%)

Query: 98  EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGL 157
           +K+S+  + ++  Y +CG + +A++LF   P +  V+W ++++ + K      + +    
Sbjct: 35  DKSSLLSNTLLDVYGKCGLIPQALQLFDEMPNRDHVSWASILTAHNKALIPRRTLS---- 90

Query: 158 KLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMY 217
            L  M    G++P+    + ++  CS L  L+LGKQVH     S  C D    + LI MY
Sbjct: 91  MLNTMFTHDGLQPDHFVFACIVRACSSLGYLRLGKQVHARFMLSFFCDDEVVKSSLIDMY 150

Query: 218 CKCGDLEDACKLFLEIQRKDVVTWNAMISGYA---------------------------- 249
            KCG  +DA  +F  I  K+ V+W +MISGYA                            
Sbjct: 151 TKCGQPDDARAVFDSILFKNSVSWTSMISGYARSGRKCEAMDLFLQAPVRNLFSWTALIS 210

Query: 250 ---QHGKGEKALRLFDKMKDEGMK-PDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGI 305
              Q G G  +  LF++M+ EG+   D +   +++  C +  L++LG Q    +V   G 
Sbjct: 211 GLIQSGHGIYSFSLFNEMRREGIDIVDPLVLSSVVGGCANLALLELGKQ-IHGLVIALGF 269

Query: 306 AAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 338
            +       +VD+  +   ++ A D+  +MP K
Sbjct: 270 ESCLFISNALVDMYAKCSDILAAKDIFYRMPRK 302



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 76/294 (25%), Positives = 147/294 (50%), Gaps = 33/294 (11%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQ 63
           K +V+W S+++G+A+  G+  +A +LF + P  ++ S+  ++S  L+ S   + +F  F 
Sbjct: 169 KNSVSWTSMISGYARS-GRKCEAMDLFLQAPVRNLFSWTALISG-LIQSGHGIYSFSLFN 226

Query: 64  RL-----PIKDTASWNTMISGFVQKKNMA------KARDLFLAMPEKNSVSWS-AMISGY 111
            +      I D    ++++ G     N+A      +   L +A+  ++ +  S A++  Y
Sbjct: 227 EMRREGIDIVDPLVLSSVVGGCA---NLALLELGKQIHGLVIALGFESCLFISNALVDMY 283

Query: 112 IECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPN 171
            +C  +  A ++F   P K V++WT++I G  + G      AE+ L L   M+   I+PN
Sbjct: 284 AKCSDILAAKDIFYRMPRKDVISWTSIIVGTAQHGK-----AEEALTLYDEMVLSRIKPN 338

Query: 172 ASSLSSVLLGCSHLSSLQLGKQVHQLVFK----SPLCKDTTALTPLISMYCKCGDLEDAC 227
             +   +L  CSH   +  G+++ + +      +P  +  T L  L+S   + G L++A 
Sbjct: 339 EVTFVGLLYACSHAGLVSRGRELFRSMTTDYSINPSLQHYTCLLDLLS---RSGHLDEAE 395

Query: 228 KLFLEIQRK-DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKP-DSITFVAL 279
            L  +I  K D  TW +++S   +H   E  +R+ D++ D  +KP D  T++ L
Sbjct: 396 NLLDKIPFKPDEPTWASLLSACMRHNNLEMGVRIADRVLD--LKPEDPSTYILL 447



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/199 (23%), Positives = 87/199 (43%), Gaps = 31/199 (15%)

Query: 171 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 230
           N S     L  C+   S     ++H  + K+   K +     L+ +Y KCG +  A +LF
Sbjct: 2   NISHFLHQLQLCARRQSASAAGELHSQIIKAGFDKSSLLSNTLLDVYGKCGLIPQALQLF 61

Query: 231 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKM-KDEGMKPDSITFVALLLACNHAGLV 289
            E+  +D V+W ++++ + +     + L + + M   +G++PD   F  ++ AC+  G +
Sbjct: 62  DEMPNRDHVSWASILTAHNKALIPRRTLSMLNTMFTHDGLQPDHFVFACIVRACSSLGYL 121

Query: 290 DLGIQ--------YF-------DSMVNDYGIAAKPD---------------HYTCMVDLL 319
            LG Q        +F        S+++ Y    +PD                +T M+   
Sbjct: 122 RLGKQVHARFMLSFFCDDEVVKSSLIDMYTKCGQPDDARAVFDSILFKNSVSWTSMISGY 181

Query: 320 GRAGKLVEAVDLIKKMPFK 338
            R+G+  EA+DL  + P +
Sbjct: 182 ARSGRKCEAMDLFLQAPVR 200


>gi|326519957|dbj|BAK03903.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 598

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 204/478 (42%), Positives = 277/478 (57%), Gaps = 38/478 (7%)

Query: 69  DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAP 128
           D +++NT+I+   +   +A AR LF  MPE+N+VSWSAM++GY++ G   +A+ +F    
Sbjct: 158 DASTFNTLITAHARAGRVADARSLFDEMPERNAVSWSAMVNGYVQAGDGREALGVFS--- 214

Query: 129 VKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSL 188
                                             M   G+RP+ + L  VL  C+ L +L
Sbjct: 215 ---------------------------------QMQAQGVRPDDTVLVGVLAACAQLGAL 241

Query: 189 QLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGY 248
           + GK VH  +  + +       T L+ MY KCG+++   ++F  ++ K+V+ W  MI G 
Sbjct: 242 EQGKWVHGYLKANNIRMTVFLGTALVDMYAKCGEVQLGMEVFEGMKDKNVLAWTTMIKGL 301

Query: 249 AQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK 308
           A HG+G  +L LF +M+  G+KPD I F+  L AC H GLVD G + F+SMVN+YGI  K
Sbjct: 302 AMHGRGSDSLTLFSQMESSGVKPDDIAFIGALCACTHTGLVDKGRELFNSMVNNYGIKPK 361

Query: 309 PDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLF 368
            +HY CMVDLL R G L EA D+++KMP KP   I+G L++ CR HK ++LAE+   +  
Sbjct: 362 IEHYGCMVDLLARNGLLSEARDMVEKMPMKPDALIWGALMAGCRFHKNVELAEYVIKHWI 421

Query: 369 NLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSG 428
            L P + +G YV L NIY+A  +      IR  M+E  V K PG S +E+  V+H+F  G
Sbjct: 422 ELEP-DKSGAYVLLGNIYSASGRHASAREIRNLMREKGVEKTPGCSNVEIKGVIHQFIVG 480

Query: 429 DRVHPELVSIHEKLKELEKRMKL-AGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGL 487
           D  HP +  I  K  E++ R++L  GYVPD +  L  + EE  E  L  HSEKLAIAF L
Sbjct: 481 DLSHPRIKDILTKWYEIDSRIRLEEGYVPDKKEVLLDIEEEEMESALSRHSEKLAIAFAL 540

Query: 488 IKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           I      PIR+ KNLRVC DCH  TK IS +  REIIVRD TRFH FKDGTCSC DYW
Sbjct: 541 ISTEDYMPIRIVKNLRVCQDCHHVTKLISKVYGREIIVRDRTRFHLFKDGTCSCKDYW 598



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 61/289 (21%), Positives = 118/289 (40%), Gaps = 47/289 (16%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
           N+++   A   G+L DA  L       D  ++N +++     +  V  A   F  +P ++
Sbjct: 131 NALIRVHAGLLGRLADAHLLLRTSAAVDASTFNTLITA-HARAGRVADARSLFDEMPERN 189

Query: 70  TASWNTMISGFVQKKNMAKARDLFLAM------PEKNSV----------------SW--- 104
             SW+ M++G+VQ  +  +A  +F  M      P+   +                 W   
Sbjct: 190 AVSWSAMVNGYVQAGDGREALGVFSQMQAQGVRPDDTVLVGVLAACAQLGALEQGKWVHG 249

Query: 105 --------------SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVEN 150
                         +A++  Y +CG++   +E+F+    K+V+AWT MI G    G    
Sbjct: 250 YLKANNIRMTVFLGTALVDMYAKCGEVQLGMEVFEGMKDKNVLAWTTMIKGLAMHGR--- 306

Query: 151 SWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQV-HQLVFKSPLCKDTTA 209
               D L L   M   G++P+  +    L  C+H   +  G+++ + +V    +      
Sbjct: 307 --GSDSLTLFSQMESSGVKPDDIAFIGALCACTHTGLVDKGRELFNSMVNNYGIKPKIEH 364

Query: 210 LTPLISMYCKCGDLEDACKLFLEIQRK-DVVTWNAMISGYAQHGKGEKA 257
              ++ +  + G L +A  +  ++  K D + W A+++G   H   E A
Sbjct: 365 YGCMVDLLARNGLLSEARDMVEKMPMKPDALIWGALMAGCRFHKNVELA 413


>gi|357133649|ref|XP_003568436.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Brachypodium distachyon]
          Length = 610

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 198/458 (43%), Positives = 283/458 (61%), Gaps = 7/458 (1%)

Query: 89  ARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYV 148
           AR +F ++  KNSV W+A+ISGY+  G+ D+A+ELF+  P +++ AWTA+ISG+++ G  
Sbjct: 159 ARKVFDSIVAKNSVMWTALISGYVLNGRSDEALELFRSMPGRTLFAWTALISGFVRSGE- 217

Query: 149 ENSWAEDGLKLLRMMIGLGIR-PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDT 207
               +   +KL   M   G+   +A  LSS + G + L++  LG+Q+H L  +       
Sbjct: 218 ----SVSAVKLFVDMRRDGVSIDDAFVLSSAIGGAADLAAHVLGRQLHSLTMRLGFSSSM 273

Query: 208 TALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE 267
                ++ MY KC D+  A ++F EI  +D+++W  M+ G AQHG+ E+A  L+D+M   
Sbjct: 274 IVGNAVVDMYSKCSDIHSAREVFEEITGRDIISWTTMLVGEAQHGRAEEAFSLYDRMVLA 333

Query: 268 GMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVE 327
           G+KP+ +TFV L+ AC+HAGLV  G Q FDSM  +YGI  +  HYTC +DLL R+G L E
Sbjct: 334 GVKPNEVTFVGLIYACSHAGLVQKGRQLFDSMKGEYGINPRLQHYTCYLDLLSRSGHLAE 393

Query: 328 AVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYA 387
           A +LI  MP+ P  A + +LLSAC+ +   +++   A NL  L P   +  YV L+N+YA
Sbjct: 394 AEELITTMPYVPDEATWASLLSACKKYNNAEMSIRVADNLLELRPKYPS-TYVLLSNVYA 452

Query: 388 AMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEK 447
              KWD V  +R  M +  + K PGYSWIEVG     F +G+        I   L+EL  
Sbjct: 453 VNGKWDSVDTVRKLMADMEIRKEPGYSWIEVGREFRLFHAGEVPIDLREEILGFLEELVS 512

Query: 448 RMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGD 507
            M+  GYVPD    +H + E  KE  L  HSE+LA+AFG+++ PLG+ IRV KNLRVC D
Sbjct: 513 EMRQRGYVPDTSSVMHDLEEHEKEHHLCLHSERLAVAFGILRSPLGSVIRVVKNLRVCND 572

Query: 508 CHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           CH   K+IS I +R+IIVRD +RFHHF+ G CSC ++W
Sbjct: 573 CHTVMKFISEIFQRKIIVRDASRFHHFEGGKCSCSEFW 610



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/159 (33%), Positives = 82/159 (51%), Gaps = 6/159 (3%)

Query: 107 MISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGL 166
           ++S Y +   L     LF   P + +  ++++++         +   E  L LLR M+  
Sbjct: 44  LVSAYAKSRLLPDTRLLFDETPRRDLHLYSSLLAAVS-----HSESPELVLPLLRRMLSA 98

Query: 167 -GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLED 225
             +RP+   L+S+    + L SL LGKQ+H     SP   D    + LI MYCKCG  +D
Sbjct: 99  DALRPDHFVLASIASATARLRSLCLGKQLHGHFVASPYSSDDVVKSSLIDMYCKCGVPDD 158

Query: 226 ACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKM 264
           A K+F  I  K+ V W A+ISGY  +G+ ++AL LF  M
Sbjct: 159 ARKVFDSIVAKNSVMWTALISGYVLNGRSDEALELFRSM 197



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 74/316 (23%), Positives = 134/316 (42%), Gaps = 67/316 (21%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLN--SDDVVAAFDFFQRLPIKDTASWNTMIS 78
           G   DA+++FD I   + V +  ++S  +LN  SD+   A + F+ +P +   +W  +IS
Sbjct: 154 GVPDDARKVFDSIVAKNSVMWTALISGYVLNGRSDE---ALELFRSMPGRTLFAWTALIS 210

Query: 79  GFVQKKNMAKARDLFLAMPEKNSVSW---------------------------------- 104
           GFV+      A  LF+ M  ++ VS                                   
Sbjct: 211 GFVRSGESVSAVKLFVDM-RRDGVSIDDAFVLSSAIGGAADLAAHVLGRQLHSLTMRLGF 269

Query: 105 -SAMISG------YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGL 157
            S+MI G      Y +C  +  A E+F+    + +++WT M+ G  + G      AE+  
Sbjct: 270 SSSMIVGNAVVDMYSKCSDIHSAREVFEEITGRDIISWTTMLVGEAQHGR-----AEEAF 324

Query: 158 KLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMY 217
            L   M+  G++PN  +   ++  CSH   +Q G+Q    +F S   K    + P +  Y
Sbjct: 325 SLYDRMVLAGVKPNEVTFVGLIYACSHAGLVQKGRQ----LFDS--MKGEYGINPRLQHY 378

Query: 218 C-------KCGDLEDACKLFLEIQR-KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGM 269
                   + G L +A +L   +    D  TW +++S   ++   E ++R+ D + +   
Sbjct: 379 TCYLDLLSRSGHLAEAEELITTMPYVPDEATWASLLSACKKYNNAEMSIRVADNLLELRP 438

Query: 270 K-PDSITFVALLLACN 284
           K P +   ++ + A N
Sbjct: 439 KYPSTYVLLSNVYAVN 454


>gi|356570490|ref|XP_003553418.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g52630-like [Glycine max]
          Length = 582

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 218/544 (40%), Positives = 309/544 (56%), Gaps = 34/544 (6%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQ 63
           K+   W+SV++ FA+            + +P P +  +  ML   LL  D  +       
Sbjct: 71  KSATTWSSVISSFAQ------------NDLPLPALRFFRRMLRHGLLPDDHTLPT----A 114

Query: 64  RLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVEL 123
              +   +S    +S        A   D+F+          S+++  Y +CG ++ A ++
Sbjct: 115 AKSVAALSSLPLALSLHALSLKTAHHHDVFVG---------SSLVDTYAKCGDVNLARKV 165

Query: 124 FKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI--GLGIRPNASSLSSVLLG 181
           F   P K+VV+W+ MI GY + G       E+ L L +  +     IR N  +LSSVL  
Sbjct: 166 FDEMPHKNVVSWSGMIYGYSQMGL-----DEEALNLFKRALEQDYDIRVNDFTLSSVLRV 220

Query: 182 CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTW 241
           CS  +  +LGKQVH L FK+         + LIS+Y KCG +E   K+F E++ +++  W
Sbjct: 221 CSASTLFELGKQVHGLCFKTSFDSSCFVASSLISLYSKCGVVEGGYKVFEEVKVRNLGMW 280

Query: 242 NAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN 301
           NAM+   AQH    +   LF++M+  G+KP+ ITF+ LL AC+HAGLV+ G   F  ++ 
Sbjct: 281 NAMLIACAQHAHTGRTFELFEEMERVGVKPNFITFLCLLYACSHAGLVEKGEHCF-GLMK 339

Query: 302 DYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAE 361
           ++GI     HY  +VDLLGRAGKL EAV +IK+MP +P  +++G LL+ CR+H   +LA 
Sbjct: 340 EHGIEPGSQHYATLVDLLGRAGKLEEAVLVIKEMPMQPTESVWGALLTGCRIHGNTELAS 399

Query: 362 FAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTV 421
           F A  +F +  A ++G  V L+N YAA  +W++ AR R  M++  + K  G SW+E G  
Sbjct: 400 FVADKVFEMG-AVSSGIQVLLSNAYAAAGRWEEAARARKMMRDQGIKKETGLSWVEEGNR 458

Query: 422 VHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKL 481
           VH F +GDR H +   I+EKL+EL + M  AGYV D  F L  V  + K Q + +HSE+L
Sbjct: 459 VHTFAAGDRSHGKTREIYEKLEELGEEMAKAGYVADTSFVLKEVDGDEKSQTIRYHSERL 518

Query: 482 AIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSC 541
           AIAFGLI  P   PIRV KNLRVCGDCH A K+IS    R IIVRD  RFH F+DG C+C
Sbjct: 519 AIAFGLITFPPEWPIRVMKNLRVCGDCHTAIKFISKCTGRVIIVRDNNRFHRFEDGKCTC 578

Query: 542 GDYW 545
           GDYW
Sbjct: 579 GDYW 582



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/190 (31%), Positives = 99/190 (52%), Gaps = 7/190 (3%)

Query: 107 MISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGL 166
           +I+ Y +      +++LF   P KS   W+++IS      + +N      L+  R M+  
Sbjct: 48  LINFYSKTNLPHSSLKLFDSFPHKSATTWSSVIS-----SFAQNDLPLPALRFFRRMLRH 102

Query: 167 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 226
           G+ P+  +L +     + LSSL L   +H L  K+    D    + L+  Y KCGD+  A
Sbjct: 103 GLLPDDHTLPTAAKSVAALSSLPLALSLHALSLKTAHHHDVFVGSSLVDTYAKCGDVNLA 162

Query: 227 CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKM--KDEGMKPDSITFVALLLACN 284
            K+F E+  K+VV+W+ MI GY+Q G  E+AL LF +   +D  ++ +  T  ++L  C+
Sbjct: 163 RKVFDEMPHKNVVSWSGMIYGYSQMGLDEEALNLFKRALEQDYDIRVNDFTLSSVLRVCS 222

Query: 285 HAGLVDLGIQ 294
            + L +LG Q
Sbjct: 223 ASTLFELGKQ 232



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 47/102 (46%)

Query: 175 LSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ 234
           +  VL+  +H  SL+ G Q+H  V K            LI+ Y K      + KLF    
Sbjct: 10  ICKVLVWFTHTRSLRKGLQLHGQVIKLGFEAIPLVCHHLINFYSKTNLPHSSLKLFDSFP 69

Query: 235 RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITF 276
            K   TW+++IS +AQ+     ALR F +M   G+ PD  T 
Sbjct: 70  HKSATTWSSVISSFAQNDLPLPALRFFRRMLRHGLLPDDHTL 111


>gi|449440989|ref|XP_004138266.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449524140|ref|XP_004169081.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 695

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 221/540 (40%), Positives = 314/540 (58%), Gaps = 29/540 (5%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNS--DDVVAAFDFFQRLPIK-DTASWNTMI 77
           G++  A+ +FD +P+  +V++N MLS    N   D+VV  F     L I+ D     TMI
Sbjct: 170 GQIGVARHVFDGMPERSIVAWNSMLSGYTKNGLWDEVVKLFRKILELRIEFDDV---TMI 226

Query: 78  SGFVQKKNMAKARDLFLAMPE------------KNSVSWSAMISGYIECGQLDKAVELFK 125
           S       MA  R   L + E            +N+   +++I  Y +CGQ+D A +LF 
Sbjct: 227 SVL-----MACGRLANLEIGELIGEYIVSKGLRRNNTLTTSLIDMYAKCGQVDTARKLFD 281

Query: 126 VAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHL 185
               + VVAW+AMISGY      +    ++ L L   M    + PN  ++ SVL  C+ L
Sbjct: 282 EMDKRDVVAWSAMISGY-----AQADRCKEALNLFHEMQKGNVYPNEVTMVSVLYSCAML 336

Query: 186 SSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMI 245
            + + GK VH  + K  +    T  T LI  Y KCG ++ + ++F E+  K+V TW A+I
Sbjct: 337 GAYETGKWVHFYIKKKKMKLTVTLGTQLIDFYAKCGYIDRSVEVFKEMSFKNVFTWTALI 396

Query: 246 SGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGI 305
            G A +G+G+ AL  F  M +  +KP+ +TF+ +L AC+HA LVD G   F+SM  D+ I
Sbjct: 397 QGLANNGEGKMALEFFSSMLENDVKPNDVTFIGVLSACSHACLVDQGRHLFNSMRRDFDI 456

Query: 306 AAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAM 365
             + +HY CMVD+LGRAG L EA   I  MPF P   ++ TLL++CR HK +++AE +  
Sbjct: 457 EPRIEHYGCMVDILGRAGFLEEAYQFIDNMPFPPNAVVWRTLLASCRAHKNIEMAEKSLE 516

Query: 366 NLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEF 425
           ++  L PA+ +G Y+ L+N YA + + +D  R+R  +KE  + K+PG S IE+  VVHEF
Sbjct: 517 HITRLEPAH-SGDYILLSNTYALVGRVEDAIRVRSLIKEKEIKKIPGCSLIELDGVVHEF 575

Query: 426 RSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAF 485
            S D  H     IH+ L ++ K++K  GYVP+ + A     EE KE  +  HSEKLAIA+
Sbjct: 576 FSEDGEHKHSKEIHDALDKMMKQIKRLGYVPNTDDARLEAEEESKETSVSHHSEKLAIAY 635

Query: 486 GLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           GLI+    T IR+ KNLR+C DCH ATK+IS + +R IIVRD  RFHHFKDG CSC DYW
Sbjct: 636 GLIRTSPRTTIRISKNLRMCRDCHNATKFISQVFERMIIVRDRNRFHHFKDGLCSCNDYW 695



 Score =  151 bits (382), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 97/340 (28%), Positives = 166/340 (48%), Gaps = 45/340 (13%)

Query: 38  VVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP 97
           +++  ++ S  LL  D +  A   F  +   +++++N MI G   K++   A  LF  M 
Sbjct: 54  IITEAVLESAALLLPDTIDYALSIFNHIDKPESSAYNVMIRGLAFKRSPDNALLLFKKMH 113

Query: 98  EK---------------------------------------NSVSWSAMISGYIECGQLD 118
           EK                                       N    + +I  Y  CGQ+ 
Sbjct: 114 EKSVQHDKFTFSSVLKACSRMKALREGEQVHALILKSGFKSNEFVENTLIQMYANCGQIG 173

Query: 119 KAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSV 178
            A  +F   P +S+VAW +M+SGY K G     W E  +KL R ++ L I  +  ++ SV
Sbjct: 174 VARHVFDGMPERSIVAWNSMLSGYTKNGL----WDE-VVKLFRKILELRIEFDDVTMISV 228

Query: 179 LLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDV 238
           L+ C  L++L++G+ + + +    L ++ T  T LI MY KCG ++ A KLF E+ ++DV
Sbjct: 229 LMACGRLANLEIGELIGEYIVSKGLRRNNTLTTSLIDMYAKCGQVDTARKLFDEMDKRDV 288

Query: 239 VTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDS 298
           V W+AMISGYAQ  + ++AL LF +M+   + P+ +T V++L +C   G  + G ++   
Sbjct: 289 VAWSAMISGYAQADRCKEALNLFHEMQKGNVYPNEVTMVSVLYSCAMLGAYETG-KWVHF 347

Query: 299 MVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 338
            +    +       T ++D   + G +  +V++ K+M FK
Sbjct: 348 YIKKKKMKLTVTLGTQLIDFYAKCGYIDRSVEVFKEMSFK 387


>gi|302760949|ref|XP_002963897.1| hypothetical protein SELMODRAFT_80086 [Selaginella moellendorffii]
 gi|300169165|gb|EFJ35768.1| hypothetical protein SELMODRAFT_80086 [Selaginella moellendorffii]
          Length = 714

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 214/579 (36%), Positives = 318/579 (54%), Gaps = 44/579 (7%)

Query: 3   VKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFF 62
           V+  V WN+++ G+A Q G L +A ELF  +PQ + V +N ++S +  N   +  A + F
Sbjct: 144 VRNVVTWNTMIGGYA-QAGHLDNATELFGLMPQWNEVCWNALISGMGRNRR-LPDALELF 201

Query: 63  QRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVE 122
           Q LP +D  SW  MI G V   ++ +A DLF  MP  + V W+A+++ +   G L +A +
Sbjct: 202 QALPFRDMVSWIAMIQGCVHSGDLHRAWDLFKRMPLTDVVIWTAIVTAFAHSGFLQEARD 261

Query: 123 LFKVAPVKS--------------------------------VVAWTAMISGYMKFGYVEN 150
           LF   P+K                                 V++W A+++ + + G+   
Sbjct: 262 LFDAIPIKDAAAVNAMIAAYGLHGEIARAKDLFDSAGDLRDVISWNALLAAFSQNGH--- 318

Query: 151 SWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQ---LVFKSPLCKDT 207
             A   L +   M   GI P+  S  S L  C+ L++L+ GK +H+   L  +  +  + 
Sbjct: 319 --ARQALGIFAGMDLEGIHPDGISFVSALDACTILTALREGKLLHEELLLASQGEIFVEA 376

Query: 208 TALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE 267
           +  T L++ Y KCG L++A  LF  +   D +  N+M+  YAQ G+  +A  LF +    
Sbjct: 377 SLATALVNFYAKCGRLDEARSLFDAMAFCDAILLNSMLGAYAQSGRAGEAADLFQRAILS 436

Query: 268 GMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVE 327
           G+ PD++TFV+++ AC+HAGL+DLG +YF S+V D+ +A    HYTCMVDLL R G L++
Sbjct: 437 GIHPDAVTFVSMVSACSHAGLLDLGHRYFLSLVGDFALAPHAAHYTCMVDLLARTGHLMD 496

Query: 328 AVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYA 387
             DL+  MPF+P+   + +LL+ CR H  +      A    N NP   +  YV L+ +Y 
Sbjct: 497 GEDLLDAMPFQPEYTAWKSLLAGCRTHGDVGRGARLARRATNANPV-CSSPYVLLSRLYD 555

Query: 388 AMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEK 447
           A  K  D   +R +M    + K  G S I +    HEF +G + HPE+ +I ++L  L  
Sbjct: 556 AAGKHGDGISVRKAMDARRLRKPAGLSSITIKGRAHEFVAGGKNHPEISAILDELHSLNA 615

Query: 448 RMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKV-PLGTPIRVFKNLRVCG 506
           +M+ AGYVPD    LH   +E KEQ L FHSEKLA+ FG+I       P+ V KNLR+C 
Sbjct: 616 KMREAGYVPDTSNVLHDFDDEEKEQSLSFHSEKLAVVFGMISTRGRSDPLFVVKNLRMCT 675

Query: 507 DCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           DCH ATK++S I KR I VRD  RFHHF+DG C+C D+W
Sbjct: 676 DCHTATKFMSRIAKRAITVRDAHRFHHFQDGACACADFW 714



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 68/274 (24%), Positives = 113/274 (41%), Gaps = 47/274 (17%)

Query: 93  FLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSW 152
           F ++    + S + M++ Y + G LD A   F   P K VV+W  M+SGY ++G   ++ 
Sbjct: 15  FDSIRNPTAFSHNVMVAAYAQNGYLDLAARTFDRTPNKDVVSWNGMLSGYARYGSFRDA- 73

Query: 153 AEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTP 212
                   ++        N  S ++++   +   +L   +     +F S   +D      
Sbjct: 74  --------KLFFDEMPYKNTVSYNTLISAFARQGNLAEARN----LFNSMKIRDAATWNV 121

Query: 213 LISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKD------ 266
           LI+ Y +      A ++F     ++VVTWN MI GYAQ G  + A  LF  M        
Sbjct: 122 LIAGYTQRCLCTHAREIFDRAPVRNVVTWNTMIGGYAQAGHLDNATELFGLMPQWNEVCW 181

Query: 267 ----EGMK-----PDS------------ITFVALLLACNHAGLVDLGIQYFDSM-VNDYG 304
                GM      PD+            ++++A++  C H+G +      F  M + D  
Sbjct: 182 NALISGMGRNRRLPDALELFQALPFRDMVSWIAMIQGCVHSGDLHRAWDLFKRMPLTDVV 241

Query: 305 IAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 338
           I      +T +V     +G L EA DL   +P K
Sbjct: 242 I------WTAIVTAFAHSGFLQEARDLFDAIPIK 269



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 53/228 (23%), Positives = 96/228 (42%), Gaps = 22/228 (9%)

Query: 111 YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRP 170
           Y  CG +  AV  F      +  +   M++ Y + GY         L L           
Sbjct: 2   YGRCGCVADAVICFDSIRNPTAFSHNVMVAAYAQNGY---------LDLAARTFDRTPNK 52

Query: 171 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 230
           +  S + +L G +   S +  K    L F     K+T +   LIS + + G+L +A  LF
Sbjct: 53  DVVSWNGMLSGYARYGSFRDAK----LFFDEMPYKNTVSYNTLISAFARQGNLAEARNLF 108

Query: 231 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVD 290
             ++ +D  TWN +I+GY Q      A  +FD+     +    +T+  ++     AG +D
Sbjct: 109 NSMKIRDAATWNVLIAGYTQRCLCTHAREIFDRAPVRNV----VTWNTMIGGYAQAGHLD 164

Query: 291 LGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 338
              + F  M     +      +  ++  +GR  +L +A++L + +PF+
Sbjct: 165 NATELFGLMPQWNEVC-----WNALISGMGRNRRLPDALELFQALPFR 207



 Score = 48.9 bits (115), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 9/123 (7%)

Query: 216 MYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSIT 275
           MY +CG + DA   F  I+     + N M++ YAQ+G  + A R FD+  ++    D ++
Sbjct: 1   MYGRCGCVADAVICFDSIRNPTAFSHNVMVAAYAQNGYLDLAARTFDRTPNK----DVVS 56

Query: 276 FVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335
           +  +L      G       +FD M     ++     Y  ++    R G L EA +L   M
Sbjct: 57  WNGMLSGYARYGSFRDAKLFFDEMPYKNTVS-----YNTLISAFARQGNLAEARNLFNSM 111

Query: 336 PFK 338
             +
Sbjct: 112 KIR 114


>gi|5080805|gb|AAD39314.1|AC007258_3 Hypothetical protein [Arabidopsis thaliana]
          Length = 615

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 198/455 (43%), Positives = 280/455 (61%), Gaps = 20/455 (4%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI 164
           + +I  Y  CG LD A ++F   P +S+V+W +MI   ++FG  +++     L+L R M 
Sbjct: 167 NGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRFGEYDSA-----LQLFREM- 220

Query: 165 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKS---PLCKDTTALTPLISMYCKCG 221
                P+  ++ SVL  C+ L SL LG   H  + +     +  D      LI MYCKCG
Sbjct: 221 QRSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCG 280

Query: 222 DLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKD--EGMKPDSITFVAL 279
            L  A ++F  +Q++D+ +WNAMI G+A HG+ E+A+  FD+M D  E ++P+S+TFV L
Sbjct: 281 SLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMVDKRENVRPNSVTFVGL 340

Query: 280 LLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKP 339
           L+ACNH G V+ G QYFD MV DY I    +HY C+VDL+ RAG + EA+D++  MP KP
Sbjct: 341 LIACNHRGFVNKGRQYFDMMVRDYCIEPALEHYGCIVDLIARAGYITEAIDMVMSMPMKP 400

Query: 340 QPAIFGTLLSAC-RVHKRLDLAEFAAMNLFNL------NPANAAGCYVQLANIYAAMKKW 392
              I+ +LL AC +    ++L+E  A N+         +  N +G YV L+ +YA+  +W
Sbjct: 401 DAVIWRSLLDACCKKGASVELSEEIARNIIGTKEDNESSNGNCSGAYVLLSRVYASASRW 460

Query: 393 DDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLA 452
           +DV  +R  M E+ + K PG S IE+  + HEF +GD  HP+   I+++LK ++ R++  
Sbjct: 461 NDVGIVRKLMSEHGIRKEPGCSSIEINGISHEFFAGDTSHPQTKQIYQQLKVIDDRLRSI 520

Query: 453 GYVPDLEFA--LHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHR 510
           GY+PD   A  + A  +  KE  L  HSE+LAIAFGLI +P  TPIR+FKNLRVC DCH 
Sbjct: 521 GYLPDRSQAPLVDATNDGSKEYSLRLHSERLAIAFGLINLPPQTPIRIFKNLRVCNDCHE 580

Query: 511 ATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
            TK IS +   EIIVRD  RFHHFKDG+CSC DYW
Sbjct: 581 VTKLISKVFNTEIIVRDRVRFHHFKDGSCSCLDYW 615



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 66/256 (25%), Positives = 112/256 (43%), Gaps = 13/256 (5%)

Query: 117 LDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLG-IRPNASSL 175
           ++ A  +F      S   W  +I         + S  E+   L R M+  G   P+  + 
Sbjct: 76  VNYAFRVFDSIENHSSFMWNTLIRACAH----DVSRKEEAFMLYRKMLERGESSPDKHTF 131

Query: 176 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR 235
             VL  C+++     GKQVH  + K     D      LI +Y  CG L+ A K+F E+  
Sbjct: 132 PFVLKACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPE 191

Query: 236 KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQY 295
           + +V+WN+MI    + G+ + AL+LF +M+    +PD  T  ++L AC   G + LG   
Sbjct: 192 RSLVSWNSMIDALVRFGEYDSALQLFREMQ-RSFEPDGYTMQSVLSACAGLGSLSLGTWA 250

Query: 296 FDSMVN--DYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRV 353
              ++   D  +A        ++++  + G L  A  + + M  K   A +  ++     
Sbjct: 251 HAFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQ-KRDLASWNAMILGFAT 309

Query: 354 HKRLDLAEFAAMNLFN 369
           H R +     AMN F+
Sbjct: 310 HGRAE----EAMNFFD 321



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 53/251 (21%), Positives = 115/251 (45%), Gaps = 30/251 (11%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILL--NSDDVVAAFDFFQRLPIKDTASWNTMIS 78
           G L  A+++FD++P+  +VS+N M+  ++     D  +  F   QR    D  +  +++S
Sbjct: 177 GCLDLARKVFDEMPERSLVSWNSMIDALVRFGEYDSALQLFREMQRSFEPDGYTMQSVLS 236

Query: 79  GFVQKKNMA----------KARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAP 128
                 +++          +  D+ +AM   + +  +++I  Y +CG L  A ++F+   
Sbjct: 237 ACAGLGSLSLGTWAHAFLLRKCDVDVAM---DVLVKNSLIEMYCKCGSLRMAEQVFQGMQ 293

Query: 129 VKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGL--GIRPNASSLSSVLLGCSHLS 186
            + + +W AMI G+   G      AE+ +     M+     +RPN+ +   +L+ C+H  
Sbjct: 294 KRDLASWNAMILGFATHGR-----AEEAMNFFDRMVDKRENVRPNSVTFVGLLIACNHRG 348

Query: 187 SLQLGKQVHQLVFK----SPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK-DVVTW 241
            +  G+Q   ++ +     P  +    +  LI+   + G + +A  + + +  K D V W
Sbjct: 349 FVNKGRQYFDMMVRDYCIEPALEHYGCIVDLIA---RAGYITEAIDMVMSMPMKPDAVIW 405

Query: 242 NAMISGYAQHG 252
            +++    + G
Sbjct: 406 RSLLDACCKKG 416


>gi|449530632|ref|XP_004172298.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 206/528 (39%), Positives = 301/528 (57%), Gaps = 13/528 (2%)

Query: 25  DAQELFDKIPQPDVVSYNIMLSCILLNSD--DVVAAFDFFQRLPIK-DTASWNTMISGFV 81
           DA ++FD IP  +VVS+  +++  + +    + + AF     + +K D+ S   +++   
Sbjct: 167 DALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACA 226

Query: 82  QKKNMAKAR--DLFLAMPE--KNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTA 137
           +  +       D +++     +N    ++++  Y++CG L++A  +F   P K +V+W+ 
Sbjct: 227 RLGDCTSGEWIDRYISDSGMGRNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWST 286

Query: 138 MISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQL 197
           MI GY       N   +  L L   M    ++P+  ++  VL  C+ L +L LG     L
Sbjct: 287 MIQGY-----AFNGLPQQALDLFFQMQSENLKPDCYTMVGVLSACATLGALDLGIWASSL 341

Query: 198 VFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKA 257
           + ++    +    T LI MY KCG +  A ++F  +++KD V WNAM+ G + +G  +  
Sbjct: 342 MDRNEFLSNPVLGTALIDMYSKCGSVTQAWEIFTAMKKKDRVVWNAMMVGLSMNGHAKAV 401

Query: 258 LRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVD 317
             LF  ++  G++PD  TF+ LL  C H G V+ G Q+F++M   + +    +HY CMVD
Sbjct: 402 FSLFSLVEKHGIRPDENTFIGLLCGCTHGGFVNEGRQFFNNMKRVFSLTPSIEHYGCMVD 461

Query: 318 LLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAG 377
           LLGRAG L EA  LI  MP KP   ++G LL  C++HK   LAE     L  L P N+ G
Sbjct: 462 LLGRAGLLNEAHQLINNMPMKPNAVVWGALLGGCKLHKDTHLAEQVLKKLIELEPWNS-G 520

Query: 378 CYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVS 437
            YVQL+NIY+   +W++  +IR +MKE  + K+   SWIE+  +VHEF  GD+ H     
Sbjct: 521 NYVQLSNIYSGNHRWEEAEKIRSTMKEQQIQKIRACSWIEIDGIVHEFLVGDKSHWLSEK 580

Query: 438 IHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIR 497
           I+ KL EL + +K  G+VP  EF L  + EE KE  L +HSEKLA+AFGLI  P    IR
Sbjct: 581 IYAKLDELGRELKAVGHVPTTEFVLFDIEEEEKEHFLGYHSEKLAVAFGLIASPPNHVIR 640

Query: 498 VFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           V KNLRVCGDCH A K IS I KREII+RDT RFH F DG+CSC DYW
Sbjct: 641 VVKNLRVCGDCHDAIKLISKITKREIIIRDTNRFHTFIDGSCSCRDYW 688



 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 75/236 (31%), Positives = 137/236 (58%), Gaps = 6/236 (2%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI 164
           ++++S Y++C   D A+++F   P K+VV+WTA+I+GY+  G+       + +   + ++
Sbjct: 153 TSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHF-----REAIGAFKKLL 207

Query: 165 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 224
            +G++P++ SL  VL  C+ L     G+ + + +  S + ++    T L+ MY KCG+LE
Sbjct: 208 EMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVATSLLDMYVKCGNLE 267

Query: 225 DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 284
            A  +F  +  KD+V+W+ MI GYA +G  ++AL LF +M+ E +KPD  T V +L AC 
Sbjct: 268 RANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGVLSACA 327

Query: 285 HAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQ 340
             G +DLGI +  S+++     + P   T ++D+  + G + +A ++   M  K +
Sbjct: 328 TLGALDLGI-WASSLMDRNEFLSNPVLGTALIDMYSKCGSVTQAWEIFTAMKKKDR 382



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 105/382 (27%), Positives = 168/382 (43%), Gaps = 57/382 (14%)

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
           F + L IK+  S    ++ F Q K++  AR L L + + N +  + ++   ++ G  + +
Sbjct: 12  FSKALEIKNYLS--NGLNFFNQLKHI-HARLLRLHLDQDNYL-LNLILCCALDFGSTNYS 67

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLL 180
             +F      ++  W  MI G      V     +D + L   M G G  PN  ++  VL 
Sbjct: 68  KLVFSQVKEPNIFLWNTMIRGL-----VSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLK 122

Query: 181 GCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVT 240
            C+    ++LG ++H L+ K+    D    T L+S+Y KC + +DA K+F +I  K+VV+
Sbjct: 123 ACARKLDVRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVS 182

Query: 241 WNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV 300
           W A+I+GY   G   +A+  F K+ + G+KPDS + V +L AC   G    G ++ D  +
Sbjct: 183 WTAIITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDCTSG-EWIDRYI 241

Query: 301 NDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK-----------------PQPAI 343
           +D G+       T ++D+  + G L  A  +   MP K                 PQ A+
Sbjct: 242 SDSGMGRNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQAL 301

Query: 344 -----------------FGTLLSACRVHKRLDLAEFAA----MNLFNLNPA--------- 373
                               +LSAC     LDL  +A+     N F  NP          
Sbjct: 302 DLFFQMQSENLKPDCYTMVGVLSACATLGALDLGIWASSLMDRNEFLSNPVLGTALIDMY 361

Query: 374 NAAGCYVQLANIYAAMKKWDDV 395
           +  G   Q   I+ AMKK D V
Sbjct: 362 SKCGSVTQAWEIFTAMKKKDRV 383



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 68/260 (26%), Positives = 109/260 (41%), Gaps = 28/260 (10%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G L+ A  +F  +P+ D+VS++ M+     N     A   FFQ           TM+ G 
Sbjct: 264 GNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMV-GV 322

Query: 81  VQKKNMAKARDLFLAMPE--------KNSVSWSAMISGYIECGQLDKAVELFKVAPVKSV 132
           +       A DL +             N V  +A+I  Y +CG + +A E+F     K  
Sbjct: 323 LSACATLGALDLGIWASSLMDRNEFLSNPVLGTALIDMYSKCGSVTQAWEIFTAMKKKDR 382

Query: 133 VAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGK 192
           V W AM+ G    G+     A+    L  ++   GIRP+ ++   +L GC+H   +  G+
Sbjct: 383 VVWNAMMVGLSMNGH-----AKAVFSLFSLVEKHGIRPDENTFIGLLCGCTHGGFVNEGR 437

Query: 193 QVHQLVFKSPLCKDTTALTPLISMY-C------KCGDLEDACKLFLEIQRK-DVVTWNAM 244
           Q    +      K   +LTP I  Y C      + G L +A +L   +  K + V W A+
Sbjct: 438 QFFNNM------KRVFSLTPSIEHYGCMVDLLGRAGLLNEAHQLINNMPMKPNAVVWGAL 491

Query: 245 ISGYAQHGKGEKALRLFDKM 264
           + G   H     A ++  K+
Sbjct: 492 LGGCKLHKDTHLAEQVLKKL 511


>gi|8778758|gb|AAF79766.1|AC009317_25 T30E16.32 [Arabidopsis thaliana]
          Length = 695

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 198/455 (43%), Positives = 280/455 (61%), Gaps = 20/455 (4%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI 164
           + +I  Y  CG LD A ++F   P +S+V+W +MI   ++FG  +++     L+L R M 
Sbjct: 247 NGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRFGEYDSA-----LQLFREM- 300

Query: 165 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKS---PLCKDTTALTPLISMYCKCG 221
                P+  ++ SVL  C+ L SL LG   H  + +     +  D      LI MYCKCG
Sbjct: 301 QRSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCG 360

Query: 222 DLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKD--EGMKPDSITFVAL 279
            L  A ++F  +Q++D+ +WNAMI G+A HG+ E+A+  FD+M D  E ++P+S+TFV L
Sbjct: 361 SLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMVDKRENVRPNSVTFVGL 420

Query: 280 LLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKP 339
           L+ACNH G V+ G QYFD MV DY I    +HY C+VDL+ RAG + EA+D++  MP KP
Sbjct: 421 LIACNHRGFVNKGRQYFDMMVRDYCIEPALEHYGCIVDLIARAGYITEAIDMVMSMPMKP 480

Query: 340 QPAIFGTLLSAC-RVHKRLDLAEFAAMNLFNL------NPANAAGCYVQLANIYAAMKKW 392
              I+ +LL AC +    ++L+E  A N+         +  N +G YV L+ +YA+  +W
Sbjct: 481 DAVIWRSLLDACCKKGASVELSEEIARNIIGTKEDNESSNGNCSGAYVLLSRVYASASRW 540

Query: 393 DDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLA 452
           +DV  +R  M E+ + K PG S IE+  + HEF +GD  HP+   I+++LK ++ R++  
Sbjct: 541 NDVGIVRKLMSEHGIRKEPGCSSIEINGISHEFFAGDTSHPQTKQIYQQLKVIDDRLRSI 600

Query: 453 GYVPDLEFA--LHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHR 510
           GY+PD   A  + A  +  KE  L  HSE+LAIAFGLI +P  TPIR+FKNLRVC DCH 
Sbjct: 601 GYLPDRSQAPLVDATNDGSKEYSLRLHSERLAIAFGLINLPPQTPIRIFKNLRVCNDCHE 660

Query: 511 ATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
            TK IS +   EIIVRD  RFHHFKDG+CSC DYW
Sbjct: 661 VTKLISKVFNTEIIVRDRVRFHHFKDGSCSCLDYW 695



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 66/256 (25%), Positives = 112/256 (43%), Gaps = 13/256 (5%)

Query: 117 LDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLG-IRPNASSL 175
           ++ A  +F      S   W  +I         + S  E+   L R M+  G   P+  + 
Sbjct: 156 VNYAFRVFDSIENHSSFMWNTLIRACAH----DVSRKEEAFMLYRKMLERGESSPDKHTF 211

Query: 176 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR 235
             VL  C+++     GKQVH  + K     D      LI +Y  CG L+ A K+F E+  
Sbjct: 212 PFVLKACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPE 271

Query: 236 KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQY 295
           + +V+WN+MI    + G+ + AL+LF +M+    +PD  T  ++L AC   G + LG   
Sbjct: 272 RSLVSWNSMIDALVRFGEYDSALQLFREMQ-RSFEPDGYTMQSVLSACAGLGSLSLGTWA 330

Query: 296 FDSMVN--DYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRV 353
              ++   D  +A        ++++  + G L  A  + + M  K   A +  ++     
Sbjct: 331 HAFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQ-KRDLASWNAMILGFAT 389

Query: 354 HKRLDLAEFAAMNLFN 369
           H R +     AMN F+
Sbjct: 390 HGRAE----EAMNFFD 401



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/251 (21%), Positives = 114/251 (45%), Gaps = 30/251 (11%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILL--NSDDVVAAFDFFQRLPIKDTASWNTMIS 78
           G L  A+++FD++P+  +VS+N M+  ++     D  +  F   QR    D  +  +++S
Sbjct: 257 GCLDLARKVFDEMPERSLVSWNSMIDALVRFGEYDSALQLFREMQRSFEPDGYTMQSVLS 316

Query: 79  ----------GFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAP 128
                     G      + +  D+ +AM   + +  +++I  Y +CG L  A ++F+   
Sbjct: 317 ACAGLGSLSLGTWAHAFLLRKCDVDVAM---DVLVKNSLIEMYCKCGSLRMAEQVFQGMQ 373

Query: 129 VKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGL--GIRPNASSLSSVLLGCSHLS 186
            + + +W AMI G+   G      AE+ +     M+     +RPN+ +   +L+ C+H  
Sbjct: 374 KRDLASWNAMILGFATHGR-----AEEAMNFFDRMVDKRENVRPNSVTFVGLLIACNHRG 428

Query: 187 SLQLGKQVHQLVFK----SPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK-DVVTW 241
            +  G+Q   ++ +     P  +    +  LI+   + G + +A  + + +  K D V W
Sbjct: 429 FVNKGRQYFDMMVRDYCIEPALEHYGCIVDLIA---RAGYITEAIDMVMSMPMKPDAVIW 485

Query: 242 NAMISGYAQHG 252
            +++    + G
Sbjct: 486 RSLLDACCKKG 496


>gi|449518887|ref|XP_004166467.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g35030, mitochondrial-like [Cucumis sativus]
          Length = 649

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 194/460 (42%), Positives = 293/460 (63%), Gaps = 15/460 (3%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNS--DDVVAA 58
           M  +  V+WN+V+  F  QR ++ +AQELF+++P+ DV+S+  M++ +  N   DD    
Sbjct: 186 MPERNVVSWNTVITAFM-QRRRVDEAQELFNRMPERDVISWTTMVAGLSKNGRIDDARLL 244

Query: 59  FDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLD 118
           FD   ++P+++  SWNTMI G+ Q   + +A  LF  MPE+   SW+ MI+G+I+ G+L+
Sbjct: 245 FD---KMPVRNVVSWNTMIIGYAQNMRLDEAFKLFEQMPERELSSWNTMITGFIQNGKLE 301

Query: 119 KAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLL-RMMIGLGIRPNASSLSS 177
           +AV+ F     K+VV WTA+ISG+++ G      +E+ LK+   M     ++PN  +  S
Sbjct: 302 RAVDFFYKMSNKNVVTWTAVISGHVQDGR-----SEEALKIFSEMQAANNVKPNEGTFVS 356

Query: 178 VLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLE--IQR 235
           VL  CS L++L  G+Q+HQ++ K+   +    ++ LI+MY KCG+LE A K+F +  I  
Sbjct: 357 VLGACSKLAALCEGQQIHQIISKTVYQEVADVVSALINMYSKCGELELARKIFDDGSIGH 416

Query: 236 KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQY 295
           +DVV+WN MI+ YA HG G KA+ LFD+M+  G +PD++T++ALL AC+HAGLVD G++ 
Sbjct: 417 RDVVSWNGMIAAYAHHGHGHKAISLFDEMQALGFRPDNVTYIALLSACSHAGLVDEGLKL 476

Query: 296 FDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHK 355
           F+++V D  I  + DH+TC+VDL GRAG+L EA D IK +  KP  +++  LL+ C VH 
Sbjct: 477 FENLVRDRSIKLREDHFTCLVDLFGRAGRLQEAFDFIKGLEVKPSASVWAALLAGCNVHG 536

Query: 356 RLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSW 415
            +DL +  A  L    P N AG Y+ L+NIYA+  KW + A +R+ MK+  + K PG SW
Sbjct: 537 HIDLGKLTAEKLLETEPEN-AGTYLVLSNIYASTGKWREAAGVRMKMKDKGLKKQPGCSW 595

Query: 416 IEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYV 455
           IEVG  VH F  GD  H E  +I+  L +L  +MK  G+ 
Sbjct: 596 IEVGNTVHVFVVGDNSHREFENIYLLLHDLHTKMKKIGHT 635



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 91/324 (28%), Positives = 184/324 (56%), Gaps = 18/324 (5%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQ-PDVVSYNIMLSCILLNSDDVVAAFDFF 62
           +  V+W +V+ G+ K  G +++A+ LFD+     +VV++  ++S   +  + +  A   F
Sbjct: 95  RDVVSWTAVITGYIKC-GMIEEAKTLFDRNDAIKNVVTWTALVSG-YVRWNRIEEARRLF 152

Query: 63  QRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVE 122
             +P+K+  SWNTMI G+ +K  + +A DLF  MPE+N VSW+ +I+ +++  ++D+A E
Sbjct: 153 DAMPVKNVISWNTMIEGYARKGWIDQALDLFEXMPERNVVSWNTVITAFMQRRRVDEAQE 212

Query: 123 LFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGC 182
           LF   P + V++WT M++G  K G ++++         R++       N  S +++++G 
Sbjct: 213 LFNRMPERDVISWTTMVAGLSKNGRIDDA---------RLLFDKMPVRNVVSWNTMIIG- 262

Query: 183 SHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWN 242
            +  +++L +     +F+    ++ ++   +I+ + + G LE A   F ++  K+VVTW 
Sbjct: 263 -YAQNMRLDEAFK--LFEQMPERELSSWNTMITGFIQNGKLERAVDFFYKMSNKNVVTWT 319

Query: 243 AMISGYAQHGKGEKALRLFDKMK-DEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN 301
           A+ISG+ Q G+ E+AL++F +M+    +KP+  TFV++L AC+    +  G Q    +++
Sbjct: 320 AVISGHVQDGRSEEALKIFSEMQAANNVKPNEGTFVSVLGACSKLAALCEG-QQIHQIIS 378

Query: 302 DYGIAAKPDHYTCMVDLLGRAGKL 325
                   D  + ++++  + G+L
Sbjct: 379 KTVYQEVADVVSALINMYSKCGEL 402



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 78/299 (26%), Positives = 150/299 (50%), Gaps = 27/299 (9%)

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPE-KNSVSWSAMISGYIECGQ 116
           A   F+ +P +D  SW  +I+G+++   + +A+ LF      KN V+W+A++SGY+   +
Sbjct: 85  ARQVFEEMPDRDVVSWTAVITGYIKCGMIEEAKTLFDRNDAIKNVVTWTALVSGYVRWNR 144

Query: 117 LDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLS 176
           +++A  LF   PVK+V++W  MI GY + G     W +  L L   M       N  S +
Sbjct: 145 IEEARRLFDAMPVKNVISWNTMIEGYARKG-----WIDQALDLFEXM----PERNVVSWN 195

Query: 177 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK 236
           +V+        +    +  +L  + P  +D  + T +++   K G ++DA  LF ++  +
Sbjct: 196 TVITAFMQRRRVD---EAQELFNRMPE-RDVISWTTMVAGLSKNGRIDDARLLFDKMPVR 251

Query: 237 DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYF 296
           +VV+WN MI GYAQ+ + ++A +LF++M +  +     ++  ++      G ++  + +F
Sbjct: 252 NVVSWNTMIIGYAQNMRLDEAFKLFEQMPERELS----SWNTMITGFIQNGKLERAVDFF 307

Query: 297 DSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP----FKPQPAIFGTLLSAC 351
             M N   +      +T ++    + G+  EA+ +  +M      KP    F ++L AC
Sbjct: 308 YKMSNKNVVT-----WTAVISGHVQDGRSEEALKIFSEMQAANNVKPNEGTFVSVLGAC 361


>gi|413947530|gb|AFW80179.1| hypothetical protein ZEAMMB73_142662 [Zea mays]
          Length = 649

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 208/549 (37%), Positives = 314/549 (57%), Gaps = 15/549 (2%)

Query: 5   TTVNWNSVLAGFAKQRGKLKDAQELFDKIPQ----PDVVSYNIMLSCILLNSDDVVAAFD 60
           T V WN++++G  + R +  +A   F  + +    P  V+Y  +LS     + DV+    
Sbjct: 108 TPVVWNALISGHNRCR-RFGEACCSFVDMARAGAAPTPVTYVSVLSACGKGTGDVLLGMQ 166

Query: 61  FFQRLP----IKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQ 116
              R+     + D    N ++  + +  +M  A  LF  M  ++ VSW++++SG    G+
Sbjct: 167 VHGRVVGSGVLPDLRVENALVDMYAECADMESAWKLFDGMQVRSVVSWTSLLSGLTRLGR 226

Query: 117 LDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLS 176
           +D+A +LF   P +  V+WTAMI GY     V+ +   + L++ R M    +  +  ++ 
Sbjct: 227 VDEARDLFGRMPERDTVSWTAMIDGY-----VQAARFREALEMFREMQCSNVSADEFTMV 281

Query: 177 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK 236
           SV+  C+ L +L++G+ V   + +  +  D      LI MY KCG +E A  +F ++  +
Sbjct: 282 SVITACAQLGALEMGEWVRVYMSRQGIKMDAFVGNALIDMYSKCGSIERALDVFKDMHHR 341

Query: 237 DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYF 296
           D  TW A+I G A +G GE+A+ +F +M      PD +TF+ +L AC HAGLVD G ++F
Sbjct: 342 DKFTWTAIILGLAVNGYGEEAIEMFHRMIGVSETPDEVTFIGVLTACTHAGLVDKGREFF 401

Query: 297 DSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKR 356
            SM   Y IA    HY C++DL GRAGK+ EA+D I +MP  P   I+GTLL+ACRVH  
Sbjct: 402 LSMRETYNIAPNVVHYGCIIDLFGRAGKITEALDAIDQMPMTPNSTIWGTLLAACRVHGN 461

Query: 357 LDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWI 416
            ++ E     L  ++P N+   Y  L+NIYA   +W+DV R+R ++ E  + K PG S I
Sbjct: 462 SEIGELVTERLLQMDPENST-VYTLLSNIYAKCNRWEDVRRLRHTIMEKGIKKEPGCSLI 520

Query: 417 EVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLF 476
           E+  ++HEF +GD+ HP    I+ KL+ +   +   GY PD+      V EE K+++L +
Sbjct: 521 EMNGIIHEFVAGDQSHPMSKEIYCKLESIINDLNNVGYFPDVTEVFVEVAEEEKQKVLFW 580

Query: 477 HSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKD 536
           HSEKLAIAF L+     T IR+ KNLR+C DCH A K IS +  RE++VRD TRFHHF+ 
Sbjct: 581 HSEKLAIAFALLSSEPNTVIRIVKNLRMCLDCHNAIKLISRLYGREVVVRDRTRFHHFRH 640

Query: 537 GTCSCGDYW 545
           G CSC DYW
Sbjct: 641 GFCSCKDYW 649



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 80/350 (22%), Positives = 142/350 (40%), Gaps = 59/350 (16%)

Query: 26  AQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAF-DFFQRLPIKDTASWNTMISGFVQKK 84
           A+ L + IP+           C++   +D VA +     R  + D  ++  ++    +  
Sbjct: 8   ARRLLEGIPR----------RCLVAAREDAVAGYARMLARGAMPDAYTFPPLLKAVARGS 57

Query: 85  NMAKARDLFLAMPE----KNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMIS 140
           + A  R +   + +    +N+   +++++ Y   G    A  L       + V W A+IS
Sbjct: 58  SAAPVRAVHAHVVKFGMGRNAHVATSLVTAYAAGGDGAAARALLSERERDTPVVWNALIS 117

Query: 141 GY---MKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSH-LSSLQLGKQVHQ 196
           G+    +FG    S+ +        M   G  P   +  SVL  C      + LG QVH 
Sbjct: 118 GHNRCRRFGEACCSFVD--------MARAGAAPTPVTYVSVLSACGKGTGDVLLGMQVHG 169

Query: 197 LVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ---------------------- 234
            V  S +  D      L+ MY +C D+E A KLF  +Q                      
Sbjct: 170 RVVGSGVLPDLRVENALVDMYAECADMESAWKLFDGMQVRSVVSWTSLLSGLTRLGRVDE 229

Query: 235 ---------RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNH 285
                     +D V+W AMI GY Q  +  +AL +F +M+   +  D  T V+++ AC  
Sbjct: 230 ARDLFGRMPERDTVSWTAMIDGYVQAARFREALEMFREMQCSNVSADEFTMVSVITACAQ 289

Query: 286 AGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335
            G +++G ++    ++  GI         ++D+  + G +  A+D+ K M
Sbjct: 290 LGALEMG-EWVRVYMSRQGIKMDAFVGNALIDMYSKCGSIERALDVFKDM 338



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 68/300 (22%), Positives = 136/300 (45%), Gaps = 48/300 (16%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M V++ V+W S+L+G  +  G++ +A++LF ++P+ D VS+  M+    + +     A +
Sbjct: 206 MQVRSVVSWTSLLSGLTRL-GRVDEARDLFGRMPERDTVSWTAMIDG-YVQAARFREALE 263

Query: 61  FFQRLPIK----DTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISGYI 112
            F+ +       D  +  ++I+   Q   +     + + M  +    ++   +A+I  Y 
Sbjct: 264 MFREMQCSNVSADEFTMVSVITACAQLGALEMGEWVRVYMSRQGIKMDAFVGNALIDMYS 323

Query: 113 ECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNA 172
           +CG +++A+++FK    +    WTA+I      G   N + E+ +++   MIG+   P+ 
Sbjct: 324 KCGSIERALDVFKDMHHRDKFTWTAII-----LGLAVNGYGEEAIEMFHRMIGVSETPDE 378

Query: 173 SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLE 232
            +   VL  C+H   +  G++     F S   ++T  + P                    
Sbjct: 379 VTFIGVLTACTHAGLVDKGRE----FFLS--MRETYNIAP-------------------- 412

Query: 233 IQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 292
               +VV +  +I  + + GK  +AL   D+M    M P+S  +  LL AC   G  ++G
Sbjct: 413 ----NVVHYGCIIDLFGRAGKITEALDAIDQMP---MTPNSTIWGTLLAACRVHGNSEIG 465



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 64/255 (25%), Positives = 107/255 (41%), Gaps = 7/255 (2%)

Query: 154 EDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPL 213
           ED +     M+  G  P+A +   +L   +  SS    + VH  V K  + ++    T L
Sbjct: 25  EDAVAGYARMLARGAMPDAYTFPPLLKAVARGSSAAPVRAVHAHVVKFGMGRNAHVATSL 84

Query: 214 ISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDS 273
           ++ Y   GD   A  L  E +R   V WNA+ISG+ +  +  +A   F  M   G  P  
Sbjct: 85  VTAYAAGGDGAAARALLSERERDTPVVWNALISGHNRCRRFGEACCSFVDMARAGAAPTP 144

Query: 274 ITFVALLLACNHA-GLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLI 332
           +T+V++L AC    G V LG+Q    +V   G+         +VD+      +  A  L 
Sbjct: 145 VTYVSVLSACGKGTGDVLLGMQVHGRVVGS-GVLPDLRVENALVDMYAECADMESAWKLF 203

Query: 333 KKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKW 392
             M  +   + + +LLS      R+D     A +LF   P      +  + + Y    ++
Sbjct: 204 DGMQVRSVVS-WTSLLSGLTRLGRVD----EARDLFGRMPERDTVSWTAMIDGYVQAARF 258

Query: 393 DDVARIRLSMKENNV 407
            +   +   M+ +NV
Sbjct: 259 REALEMFREMQCSNV 273


>gi|359489080|ref|XP_002264194.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Vitis vinifera]
          Length = 889

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 202/542 (37%), Positives = 320/542 (59%), Gaps = 12/542 (2%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNS--DDVVAAFDFFQRLPI 67
           +++L     + G L  +QE+F  +   D VS+N M++  + N   D+ +  F   +    
Sbjct: 354 SNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLFKMMKTDVK 413

Query: 68  KDTASWNTMISGFVQKKNMAKARDLFLAMPE----KNSVSWSAMISGYIECGQLDKAVEL 123
            D+ ++  ++S   Q  ++   ++L   + +     N V  + ++  Y +CG++  ++++
Sbjct: 414 PDSVTYVMLLSMSTQLGDLHLGKELHCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKV 473

Query: 124 FKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCS 183
           F+    + ++ W  +I+       V +     GL+++  M   G+ P+ +++ S+L  CS
Sbjct: 474 FENMKARDIITWNTIIASC-----VHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCS 528

Query: 184 HLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNA 243
            L++ + GK++H  +FK  L  D      LI MY KCG L ++ ++F  ++ KDVVTW A
Sbjct: 529 LLAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTA 588

Query: 244 MISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDY 303
           +IS    +G+G+KA+R F +M+  G+ PD + FVA++ AC+H+GLV+ G+ YF  M  DY
Sbjct: 589 LISACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDY 648

Query: 304 GIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFA 363
            I  + +HY C+VDLL R+  L +A D I  MP KP  +I+G LLSACR+    ++AE  
Sbjct: 649 KIEPRIEHYACVVDLLSRSALLDKAEDFILSMPLKPDSSIWGALLSACRMSGDTEIAERV 708

Query: 364 AMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVH 423
           +  +  LNP +  G YV ++NIYAA+ KWD V  IR S+K   + K PG SW+E+   V+
Sbjct: 709 SERIIELNP-DDTGYYVLVSNIYAALGKWDQVRSIRKSIKARGLKKDPGCSWMEIQNKVY 767

Query: 424 EFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAI 483
            F +G +   +   +++ L  L   M   GY+ +L+F LH + E+ K  +L  HSE+LAI
Sbjct: 768 VFGTGTKFFEQFEEVNKLLGMLAGLMAKEGYIANLQFVLHDIDEDEKRDILCGHSERLAI 827

Query: 484 AFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGD 543
           AFGL+    GTP++V KNLRVC DCH  TKYIS I +RE++VRD  RFH FKDG CSCGD
Sbjct: 828 AFGLLNTKPGTPLQVMKNLRVCEDCHTVTKYISKIVQRELLVRDANRFHVFKDGACSCGD 887

Query: 544 YW 545
           YW
Sbjct: 888 YW 889



 Score =  134 bits (338), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 95/335 (28%), Positives = 162/335 (48%), Gaps = 42/335 (12%)

Query: 9   WNSVLAGFAKQRGKLKDAQELFDKIP----QPDVVSY-NIMLSCILLNSDDVVAAFDFFQ 63
           WNS++       G   +A  L+ +      QPD  ++ +++ +C  L         DF  
Sbjct: 83  WNSIIRALT-HNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGL--------LDFEM 133

Query: 64  RLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVEL 123
              I D            +  +M    DL++          +A+I  Y     LDKA ++
Sbjct: 134 AKSIHD------------RVLDMGFGSDLYIG---------NALIDMYCRFNDLDKARKV 172

Query: 124 FKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCS 183
           F+  P++ VV+W ++ISGY   GY    W E  L++      LG+ P++ ++SSVL  C 
Sbjct: 173 FEEMPLRDVVSWNSLISGYNANGY----WNE-ALEIYYRFRNLGVVPDSYTMSSVLRACG 227

Query: 184 HLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNA 243
            L S++ G  +H L+ K  + KD      L+SMYCK   L D  ++F ++  +D V+WN 
Sbjct: 228 GLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNT 287

Query: 244 MISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDY 303
           MI GY+Q G  E++++LF +M ++  KPD +T  ++L AC H G ++ G    D M+   
Sbjct: 288 MICGYSQVGLYEESIKLFMEMVNQ-FKPDLLTITSILQACGHLGDLEFGKYVHDYMITS- 345

Query: 304 GIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 338
           G          ++++  + G L+ + ++   M  K
Sbjct: 346 GYECDTTASNILINMYAKCGNLLASQEVFSGMKCK 380



 Score =  128 bits (321), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 94/341 (27%), Positives = 165/341 (48%), Gaps = 49/341 (14%)

Query: 53  DDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFL------AMPEK------- 99
           +D+  A   F+ +P++D  SWN++ISG+       +A +++        +P+        
Sbjct: 164 NDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYRFRNLGVVPDSYTMSSVL 223

Query: 100 ------NSVSWSAMISGYIECGQLDKAV--------------------ELFKVAPVKSVV 133
                  SV    +I G IE   + K V                     +F    ++  V
Sbjct: 224 RACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAV 283

Query: 134 AWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ 193
           +W  MI GY + G  E S     +KL   M+    +P+  +++S+L  C HL  L+ GK 
Sbjct: 284 SWNTMICGYSQVGLYEES-----IKLFMEMVN-QFKPDLLTITSILQACGHLGDLEFGKY 337

Query: 194 VHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGK 253
           VH  +  S    DTTA   LI+MY KCG+L  + ++F  ++ KD V+WN+MI+ Y Q+G 
Sbjct: 338 VHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGS 397

Query: 254 GEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYT 313
            ++A++LF  MK + +KPDS+T+V LL      G + LG +    +    G  +      
Sbjct: 398 FDEAMKLFKMMKTD-VKPDSVTYVMLLSMSTQLGDLHLGKELHCDLAK-MGFNSNIVVSN 455

Query: 314 CMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVH 354
            +VD+  + G++ +++ + + M  +     + T++++C VH
Sbjct: 456 TLVDMYAKCGEMGDSLKVFENMKAR-DIITWNTIIASC-VH 494



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 60/209 (28%), Positives = 104/209 (49%), Gaps = 7/209 (3%)

Query: 86  MAKARDLFLAMPEKNSVSWSA-MISGYIECGQLDKAVELFKVA-PVKSVVAWTAMISGYM 143
           + K   L + +   +SV +SA +I+ Y        +  +F++A P  +V  W ++I    
Sbjct: 32  LHKLHSLIITLGLHHSVIFSAKLIAKYAHFRDPTSSFSVFRLASPSNNVYLWNSIIRAL- 90

Query: 144 KFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPL 203
                 N    + L L      + ++P+  +  SV+  C+ L   ++ K +H  V     
Sbjct: 91  ----THNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKSIHDRVLDMGF 146

Query: 204 CKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDK 263
             D      LI MYC+  DL+ A K+F E+  +DVV+WN++ISGY  +G   +AL ++ +
Sbjct: 147 GSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYR 206

Query: 264 MKDEGMKPDSITFVALLLACNHAGLVDLG 292
            ++ G+ PDS T  ++L AC   G V+ G
Sbjct: 207 FRNLGVVPDSYTMSSVLRACGGLGSVEEG 235


>gi|297720639|ref|NP_001172681.1| Os01g0884800 [Oryza sativa Japonica Group]
 gi|20161229|dbj|BAB90156.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|255673935|dbj|BAH91411.1| Os01g0884800 [Oryza sativa Japonica Group]
          Length = 517

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 189/444 (42%), Positives = 277/444 (62%), Gaps = 11/444 (2%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGL--KLLRM 162
           +A++  Y +  +L  A  +F   P + VV WT++++G  + G         GL  +  R 
Sbjct: 82  NALVDAYAKLSRLGAARAVFDEMPRRDVVTWTSLVTGLARAG-------SHGLAVRAYRD 134

Query: 163 MIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGD 222
           M+  G+  +  ++++VL  C+  ++L+LG+ VH    +S      +    L+SMY K G 
Sbjct: 135 MVAAGVATDEFAVAAVLSSCAGSTALELGRSVHAAAVRSGHEPFLSVGNSLVSMYAKTGS 194

Query: 223 LEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA 282
           L DA  +F  ++ +  +TW A+I GYAQ+G+G ++L ++  M   G +PD +TFV LL A
Sbjct: 195 LRDARTVFDAMRSRCAITWTALIVGYAQNGRGRESLAVYADMARSGCRPDYVTFVGLLFA 254

Query: 283 CNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPA 342
           C+HAGL+D G  +F SM +++GI+  PDHY CMVDLLGRAG+L EAVDL+ + P     A
Sbjct: 255 CSHAGLLDAGRAHFQSMQSEHGISPGPDHYACMVDLLGRAGRLGEAVDLLDRSPAAELDA 314

Query: 343 -IFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLS 401
            ++  LL+ACR H+   LAE AA  ++ L+P +A   YV L+N+Y+  ++W DVAR+R  
Sbjct: 315 TVWKALLAACRTHRNAALAERAAGMVWRLDPTDAMP-YVMLSNLYSRARRWGDVARVRAL 373

Query: 402 MKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFA 461
           M+   + K PG SW+ V  V H F +GDR H     I+ K +E+  R++  G+VPD E+A
Sbjct: 374 MRSRGISKEPGCSWVVVAGVTHVFHAGDRDHQRAAEIYRKAEEMAARIRARGHVPDTEWA 433

Query: 462 LHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKR 521
           L     E +E  L  H E+LA+AFGL+ VP   PIRV+KNLRVCGDCH A K ++ +  R
Sbjct: 434 LQDEAPEGREMGLAHHGERLAVAFGLLAVPAAAPIRVYKNLRVCGDCHAAIKMVAEVYGR 493

Query: 522 EIIVRDTTRFHHFKDGTCSCGDYW 545
           EII+RD+  FHH KDG+CSCGDYW
Sbjct: 494 EIILRDSNCFHHMKDGSCSCGDYW 517



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 54/259 (20%), Positives = 107/259 (41%), Gaps = 30/259 (11%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSD---------DVVA--- 57
           N+++  +AK   +L  A+ +FD++P+ DVV++  +++ +              D+VA   
Sbjct: 82  NALVDAYAKL-SRLGAARAVFDEMPRRDVVTWTSLVTGLARAGSHGLAVRAYRDMVAAGV 140

Query: 58  AFDFFQRLPIKDTASWNTM--ISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECG 115
           A D F    +  + + +T   +   V    +    + FL++        ++++S Y + G
Sbjct: 141 ATDEFAVAAVLSSCAGSTALELGRSVHAAAVRSGHEPFLSVG-------NSLVSMYAKTG 193

Query: 116 QLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSL 175
            L  A  +F     +  + WTA+I      GY +N    + L +   M   G RP+  + 
Sbjct: 194 SLRDARTVFDAMRSRCAITWTALI-----VGYAQNGRGRESLAVYADMARSGCRPDYVTF 248

Query: 176 SSVLLGCSHLSSLQLGKQVHQ-LVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF--LE 232
             +L  CSH   L  G+   Q +  +  +         ++ +  + G L +A  L     
Sbjct: 249 VGLLFACSHAGLLDAGRAHFQSMQSEHGISPGPDHYACMVDLLGRAGRLGEAVDLLDRSP 308

Query: 233 IQRKDVVTWNAMISGYAQH 251
               D   W A+++    H
Sbjct: 309 AAELDATVWKALLAACRTH 327


>gi|449437737|ref|XP_004136647.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
           mitochondrial-like [Cucumis sativus]
          Length = 649

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 194/460 (42%), Positives = 293/460 (63%), Gaps = 15/460 (3%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNS--DDVVAA 58
           M  +  V+WN+V+  F  QR ++ +AQELF+++P+ DV+S+  M++ +  N   DD    
Sbjct: 186 MPERNVVSWNTVITAFM-QRRRVDEAQELFNRMPERDVISWTTMVAGLSKNGRIDDARLL 244

Query: 59  FDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLD 118
           FD   ++P+++  SWNTMI G+ Q   + +A  LF  MPE+   SW+ MI+G+I+ G+L+
Sbjct: 245 FD---KMPVRNVVSWNTMIIGYAQNMRLDEAFKLFEQMPERELSSWNTMITGFIQNGKLE 301

Query: 119 KAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLL-RMMIGLGIRPNASSLSS 177
           +AV+ F     K+VV WTA+ISG+++ G      +E+ LK+   M     ++PN  +  S
Sbjct: 302 RAVDFFYKMSNKNVVTWTAVISGHVQDGR-----SEEALKIFSEMQAANNVKPNEGTFVS 356

Query: 178 VLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLE--IQR 235
           VL  CS L++L  G+Q+HQ++ K+   +    ++ LI+MY KCG+LE A K+F +  I  
Sbjct: 357 VLGACSKLAALCEGQQIHQIISKTVYQEVADVVSALINMYSKCGELELARKIFDDGSIGH 416

Query: 236 KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQY 295
           +DVV+WN MI+ YA HG G KA+ LFD+M+  G +PD++T++ALL AC+HAGLVD G++ 
Sbjct: 417 RDVVSWNGMIAAYAHHGHGHKAISLFDEMQALGFRPDNVTYIALLSACSHAGLVDEGLKL 476

Query: 296 FDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHK 355
           F+++V D  I  + DH+TC+VDL GRAG+L EA D IK +  KP  +++  LL+ C VH 
Sbjct: 477 FENLVRDRSIKLREDHFTCLVDLFGRAGRLQEAFDFIKGLEVKPSASVWAALLAGCNVHG 536

Query: 356 RLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSW 415
            +DL +  A  L    P N AG Y+ L+NIYA+  KW + A +R+ MK+  + K PG SW
Sbjct: 537 HIDLGKLTAEKLLETEPEN-AGTYLVLSNIYASTGKWREAAGVRMKMKDKGLKKQPGCSW 595

Query: 416 IEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYV 455
           IEVG  VH F  GD  H E  +I+  L +L  +MK  G+ 
Sbjct: 596 IEVGNTVHVFVVGDNSHREFENIYLLLHDLHTKMKKIGHT 635



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 91/324 (28%), Positives = 184/324 (56%), Gaps = 18/324 (5%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQ-PDVVSYNIMLSCILLNSDDVVAAFDFF 62
           +  V+W +V+ G+ K  G +++A+ LFD+     +VV++  ++S   +  + +  A   F
Sbjct: 95  RDVVSWTAVITGYIKC-GMIEEAKTLFDRNDAIKNVVTWTALVSG-YVRWNRIEEARRLF 152

Query: 63  QRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVE 122
             +P+K+  SWNTMI G+ +K  + +A DLF  MPE+N VSW+ +I+ +++  ++D+A E
Sbjct: 153 DAMPVKNVISWNTMIEGYARKGWIDQALDLFEKMPERNVVSWNTVITAFMQRRRVDEAQE 212

Query: 123 LFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGC 182
           LF   P + V++WT M++G  K G ++++         R++       N  S +++++G 
Sbjct: 213 LFNRMPERDVISWTTMVAGLSKNGRIDDA---------RLLFDKMPVRNVVSWNTMIIG- 262

Query: 183 SHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWN 242
            +  +++L +     +F+    ++ ++   +I+ + + G LE A   F ++  K+VVTW 
Sbjct: 263 -YAQNMRLDEAFK--LFEQMPERELSSWNTMITGFIQNGKLERAVDFFYKMSNKNVVTWT 319

Query: 243 AMISGYAQHGKGEKALRLFDKMK-DEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN 301
           A+ISG+ Q G+ E+AL++F +M+    +KP+  TFV++L AC+    +  G Q    +++
Sbjct: 320 AVISGHVQDGRSEEALKIFSEMQAANNVKPNEGTFVSVLGACSKLAALCEG-QQIHQIIS 378

Query: 302 DYGIAAKPDHYTCMVDLLGRAGKL 325
                   D  + ++++  + G+L
Sbjct: 379 KTVYQEVADVVSALINMYSKCGEL 402



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 78/299 (26%), Positives = 150/299 (50%), Gaps = 27/299 (9%)

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPE-KNSVSWSAMISGYIECGQ 116
           A   F+ +P +D  SW  +I+G+++   + +A+ LF      KN V+W+A++SGY+   +
Sbjct: 85  ARQVFEEMPDRDVVSWTAVITGYIKCGMIEEAKTLFDRNDAIKNVVTWTALVSGYVRWNR 144

Query: 117 LDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLS 176
           +++A  LF   PVK+V++W  MI GY + G     W +  L L   M       N  S +
Sbjct: 145 IEEARRLFDAMPVKNVISWNTMIEGYARKG-----WIDQALDLFEKM----PERNVVSWN 195

Query: 177 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK 236
           +V+        +    +  +L  + P  +D  + T +++   K G ++DA  LF ++  +
Sbjct: 196 TVITAFMQRRRVD---EAQELFNRMPE-RDVISWTTMVAGLSKNGRIDDARLLFDKMPVR 251

Query: 237 DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYF 296
           +VV+WN MI GYAQ+ + ++A +LF++M +  +     ++  ++      G ++  + +F
Sbjct: 252 NVVSWNTMIIGYAQNMRLDEAFKLFEQMPERELS----SWNTMITGFIQNGKLERAVDFF 307

Query: 297 DSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP----FKPQPAIFGTLLSAC 351
             M N   +      +T ++    + G+  EA+ +  +M      KP    F ++L AC
Sbjct: 308 YKMSNKNVVT-----WTAVISGHVQDGRSEEALKIFSEMQAANNVKPNEGTFVSVLGAC 361


>gi|115486938|ref|NP_001065956.1| Os12g0109300 [Oryza sativa Japonica Group]
 gi|113648463|dbj|BAF28975.1| Os12g0109300 [Oryza sativa Japonica Group]
 gi|125578262|gb|EAZ19408.1| hypothetical protein OsJ_34963 [Oryza sativa Japonica Group]
          Length = 645

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 213/544 (39%), Positives = 303/544 (55%), Gaps = 16/544 (2%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSD---DVVAAFDFFQRLP 66
            S+L  +A+  G L  AQ +FD++P P  VS+  +++  +   D    V  A + F    
Sbjct: 110 TSLLTLYARC-GLLHRAQRVFDEMPHPSTVSWTALITAYMDAGDLREAVHVARNAFANGM 168

Query: 67  IKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISG-----YIECGQLDKAV 121
             D+ +   +++   +  ++A    ++ A  E+  ++ S  ++      Y++CG++ KA 
Sbjct: 169 RPDSFTAVRVLTACARVADLATGETVWRA-AEQEGIAQSVFVATAAVDLYVKCGEMAKAR 227

Query: 122 ELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLG 181
           E+F     K  VAW AM+ GY   G+       + L L   M   G+RP+  +++  L  
Sbjct: 228 EVFDKMRDKDAVAWGAMVGGYASNGH-----PREALDLFLAMQAEGVRPDCYAVAGALSA 282

Query: 182 CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTW 241
           C+ L +L LG+Q  ++V       +    T LI MY KCG   +A  +F ++++KD++ W
Sbjct: 283 CTRLGALDLGRQAIRMVDWDEFLDNPVLGTALIDMYAKCGSTAEAWVVFQQMRKKDIIVW 342

Query: 242 NAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN 301
           NAMI G    G  + A  L  +M+  G+K +  TF+ LL +C H GL+  G +YF +M  
Sbjct: 343 NAMILGLGMTGHEKTAFTLIGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTK 402

Query: 302 DYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAE 361
            Y I+ + +HY C+VDLL RAG L EA  LI  MP      I G LL  C++H+  +LAE
Sbjct: 403 LYHISPRIEHYGCIVDLLSRAGLLQEAHQLIDDMPMPANAVILGALLGGCKIHRNAELAE 462

Query: 362 FAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTV 421
                L  L P N+ G YV L+NIY+   +W+D A++RL MKE  V K+P  SW+E    
Sbjct: 463 HVLTQLIRLEPWNS-GNYVMLSNIYSNRGRWEDAAKLRLDMKEKGVEKVPACSWVEFEGK 521

Query: 422 VHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKL 481
           VHEFR GD+ HP    I++KL EL   MK  GY P  E  +  V +E KE  L+ HSEKL
Sbjct: 522 VHEFRVGDKSHPLSDQIYKKLDELGLEMKTMGYEPTTEVVMFDVEDEEKEHTLVHHSEKL 581

Query: 482 AIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSC 541
           AIAF L+    G  IRV KNLRVC DCH A K IS I  REIIVRD  RFH F+DG+CSC
Sbjct: 582 AIAFNLLVTGPGETIRVTKNLRVCSDCHTAIKLISRITHREIIVRDNNRFHCFRDGSCSC 641

Query: 542 GDYW 545
            DYW
Sbjct: 642 NDYW 645



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 66/226 (29%), Positives = 102/226 (45%), Gaps = 11/226 (4%)

Query: 170 PNASSLS--SVLLGCSHLS-SLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 226
           PN S L+    L   S L   L+ G+Q+H    K P   +   LT L+++Y +CG L  A
Sbjct: 66  PNPSHLTFPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLTLYARCGLLHRA 125

Query: 227 CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHA 286
            ++F E+     V+W A+I+ Y   G   +A+ +       GM+PDS T V +L AC   
Sbjct: 126 QRVFDEMPHPSTVSWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARV 185

Query: 287 GLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGT 346
             +  G   + +   + GIA      T  VDL  + G++ +A ++  KM  K   A +G 
Sbjct: 186 ADLATGETVWRAAEQE-GIAQSVFVATAAVDLYVKCGEMAKAREVFDKMRDKDAVA-WGA 243

Query: 347 LLS--ACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMK 390
           ++   A   H R  L  F AM    + P     CY     + A  +
Sbjct: 244 MVGGYASNGHPREALDLFLAMQAEGVRP----DCYAVAGALSACTR 285


>gi|108862088|gb|ABA96198.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 692

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 210/533 (39%), Positives = 297/533 (55%), Gaps = 15/533 (2%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSD---DVVAAFDFFQRLPIKDTASWNTMI 77
           G L  AQ +FD++P P  VS+  +++  +   D    V  A + F      D+ +   ++
Sbjct: 167 GLLHRAQRVFDEMPHPSTVSWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVL 226

Query: 78  SGFVQKKNMAKARDLFLAMPEKNSVSWSAMISG-----YIECGQLDKAVELFKVAPVKSV 132
           +   +  ++A    ++ A  E+  ++ S  ++      Y++CG++ KA E+F     K  
Sbjct: 227 TACARVADLATGETVWRA-AEQEGIAQSVFVATAAVDLYVKCGEMAKAREVFDKMRDKDA 285

Query: 133 VAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGK 192
           VAW AM+ GY   G+       + L L   M   G+RP+  +++  L  C+ L +L LG+
Sbjct: 286 VAWGAMVGGYASNGH-----PREALDLFLAMQAEGVRPDCYAVAGALSACTRLGALDLGR 340

Query: 193 QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHG 252
           Q  ++V       +    T LI MY KCG   +A  +F ++++KD++ WNAMI G    G
Sbjct: 341 QAIRMVDWDEFLDNPVLGTALIDMYAKCGSTAEAWVVFQQMRKKDIIVWNAMILGLGMTG 400

Query: 253 KGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY 312
             + A  L  +M+  G+K +  TF+ LL +C H GL+  G +YF +M   Y I+ + +HY
Sbjct: 401 HEKTAFTLIGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHY 460

Query: 313 TCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNP 372
            C+VDLL RAG L EA  LI  MP      I G LL  C++H+  +LAE     L  L P
Sbjct: 461 GCIVDLLSRAGLLQEAHQLIDDMPMPANAVILGALLGGCKIHRNAELAEHVLTQLIRLEP 520

Query: 373 ANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVH 432
            N+ G YV L+NIY+   +W+D A++RL MKE  V K+P  SW+E    VHEFR GD+ H
Sbjct: 521 WNS-GNYVMLSNIYSNRGRWEDAAKLRLDMKEKGVEKVPACSWVEFEGKVHEFRVGDKSH 579

Query: 433 PELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPL 492
           P    I++KL EL   MK  GY P  E  +  V +E KE  L+ HSEKLAIAF L+    
Sbjct: 580 PLSDQIYKKLDELGLEMKTMGYEPTTEVVMFDVEDEEKEHTLVHHSEKLAIAFNLLVTGP 639

Query: 493 GTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           G  IRV KNLRVC DCH A K IS I  REIIVRD  RFH F+DG+CSC DYW
Sbjct: 640 GETIRVTKNLRVCSDCHTAIKLISRITHREIIVRDNNRFHCFRDGSCSCNDYW 692



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 69/231 (29%), Positives = 119/231 (51%), Gaps = 6/231 (2%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI 164
           +++++ Y  CG L +A  +F   P  S V+WTA+I+ YM  G +      + + + R   
Sbjct: 157 TSLLTLYARCGLLHRAQRVFDEMPHPSTVSWTALITAYMDAGDL-----REAVHVARNAF 211

Query: 165 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 224
             G+RP++ +   VL  C+ ++ L  G+ V +   +  + +     T  + +Y KCG++ 
Sbjct: 212 ANGMRPDSFTAVRVLTACARVADLATGETVWRAAEQEGIAQSVFVATAAVDLYVKCGEMA 271

Query: 225 DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 284
            A ++F +++ KD V W AM+ GYA +G   +AL LF  M+ EG++PD       L AC 
Sbjct: 272 KAREVFDKMRDKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGVRPDCYAVAGALSACT 331

Query: 285 HAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335
             G +DLG Q    MV+       P   T ++D+  + G   EA  + ++M
Sbjct: 332 RLGALDLGRQAI-RMVDWDEFLDNPVLGTALIDMYAKCGSTAEAWVVFQQM 381



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 66/226 (29%), Positives = 102/226 (45%), Gaps = 11/226 (4%)

Query: 170 PNASSLS--SVLLGCSHLS-SLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 226
           PN S L+    L   S L   L+ G+Q+H    K P   +   LT L+++Y +CG L  A
Sbjct: 113 PNPSHLTFPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLTLYARCGLLHRA 172

Query: 227 CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHA 286
            ++F E+     V+W A+I+ Y   G   +A+ +       GM+PDS T V +L AC   
Sbjct: 173 QRVFDEMPHPSTVSWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARV 232

Query: 287 GLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGT 346
             +  G   + +   + GIA      T  VDL  + G++ +A ++  KM  K   A +G 
Sbjct: 233 ADLATGETVWRAAEQE-GIAQSVFVATAAVDLYVKCGEMAKAREVFDKMRDKDAVA-WGA 290

Query: 347 LLS--ACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMK 390
           ++   A   H R  L  F AM    + P     CY     + A  +
Sbjct: 291 MVGGYASNGHPREALDLFLAMQAEGVRP----DCYAVAGALSACTR 332


>gi|413954823|gb|AFW87472.1| hypothetical protein ZEAMMB73_326917 [Zea mays]
          Length = 610

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 207/529 (39%), Positives = 300/529 (56%), Gaps = 48/529 (9%)

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMISG--- 110
           A +    +P ++  SW  MISG+ Q +  A+A DLF+ M     E N  + +++++    
Sbjct: 89  AHNVLDGMPERNVVSWTAMISGYSQNERPAEAWDLFIMMLRAGCEPNEFTLASVLTSCTG 148

Query: 111 ----------------------------------YIECGQLDKAVELFKVAPVKSVVAWT 136
                                             Y     + +A  +F + P + VV++T
Sbjct: 149 SQGIHQHQIKQVHAFAIKKNFELHMFVGSSLLDMYARSENIQEARRVFDMLPARDVVSYT 208

Query: 137 AMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQ 196
            ++SGY + G       E+ L L R +   G++ N  + S +L   S LSS+  GKQVH 
Sbjct: 209 TILSGYTRLGL-----DEEALNLFRQLYNEGMQCNQVTFSVLLNALSGLSSMDYGKQVHG 263

Query: 197 LVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEK 256
           L+ +  L         LI MY KCG L  + ++F  +  + VV+WNAM+ GY +HG   +
Sbjct: 264 LILRRELPFFMALQNSLIDMYSKCGKLLYSRRVFDNMPERSVVSWNAMLMGYGRHGMAYE 323

Query: 257 ALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMV 316
            ++LF  M D+ +KPDS+T +A+LL  +H GLVD G+  FD +V +        HY C++
Sbjct: 324 VVQLFRFMCDK-VKPDSVTLLAVLLGYSHGGLVDEGLDMFDHIVKEQSTLLNTQHYGCVI 382

Query: 317 DLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAA 376
           DLLGR+G+L +A+ LI+KMPF+P  AI+G+LL ACRVH  + + EF A  LF++ P NA 
Sbjct: 383 DLLGRSGQLEKALLLIQKMPFQPTRAIWGSLLGACRVHANVHVGEFVAQKLFDIEPENA- 441

Query: 377 GCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELV 436
           G YV L+NIYAA + W DV R+R  M +  V+K PG SW+ +  V+H F S +R HP   
Sbjct: 442 GNYVILSNIYAAARMWKDVFRLRKLMLKKTVIKEPGRSWMILDKVIHTFHSSERFHPRKE 501

Query: 437 SIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPI 496
            I+ K+ E+   +K AG+VPDL   LH V +E KE++LL HSEKLAI FGL+  P    I
Sbjct: 502 DINVKINEIYAAIKAAGFVPDLSCVLHDVDDEQKERMLLGHSEKLAITFGLMSTPSDLTI 561

Query: 497 RVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           +V KNLR+C DCH   K++S +  REI +RD  RFH   +G C+CGDYW
Sbjct: 562 QVMKNLRICVDCHNFAKFVSKVYGREISLRDKNRFHLITEGACTCGDYW 610



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 68/231 (29%), Positives = 117/231 (50%), Gaps = 14/231 (6%)

Query: 111 YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRP 170
           Y  CG L+ A  +    P ++VV+WTAMIS     GY +N    +   L  MM+  G  P
Sbjct: 80  YARCGALEDAHNVLDGMPERNVVSWTAMIS-----GYSQNERPAEAWDLFIMMLRAGCEP 134

Query: 171 NASSLSSVLLGCSHLSSLQLG--KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK 228
           N  +L+SVL  C+    +     KQVH    K          + L+ MY +  ++++A +
Sbjct: 135 NEFTLASVLTSCTGSQGIHQHQIKQVHAFAIKKNFELHMFVGSSLLDMYARSENIQEARR 194

Query: 229 LFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGL 288
           +F  +  +DVV++  ++SGY + G  E+AL LF ++ +EGM+ + +TF  LL A +    
Sbjct: 195 VFDMLPARDVVSYTTILSGYTRLGLDEEALNLFRQLYNEGMQCNQVTFSVLLNALSGLSS 254

Query: 289 VDLGIQYFDSMVND---YGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 336
           +D G Q    ++     + +A +      ++D+  + GKL+ +  +   MP
Sbjct: 255 MDYGKQVHGLILRRELPFFMALQ----NSLIDMYSKCGKLLYSRRVFDNMP 301



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 54/191 (28%), Positives = 96/191 (50%), Gaps = 12/191 (6%)

Query: 182 CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTW 241
           C    +L+ G+QVH  +  +         T L+ MY +CG LEDA  +   +  ++VV+W
Sbjct: 45  CVGRRALREGRQVHARMVTAGYRPALYLATRLVIMYARCGALEDAHNVLDGMPERNVVSW 104

Query: 242 NAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN 301
            AMISGY+Q+ +  +A  LF  M   G +P+  T  ++L +C  +  +    Q+    V+
Sbjct: 105 TAMISGYSQNERPAEAWDLFIMMLRAGCEPNEFTLASVLTSCTGSQGIH---QHQIKQVH 161

Query: 302 DYGIAAKPDHY----TCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRL 357
            + I    + +    + ++D+  R+  + EA  +   +P +   + + T+LS    + RL
Sbjct: 162 AFAIKKNFELHMFVGSSLLDMYARSENIQEARRVFDMLPARDVVS-YTTILSG---YTRL 217

Query: 358 DLAEFAAMNLF 368
            L E  A+NLF
Sbjct: 218 GLDE-EALNLF 227



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 48/184 (26%), Positives = 83/184 (45%), Gaps = 48/184 (26%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLS----------------------- 46
           +S+L  +A+    +++A+ +FD +P  DVVSY  +LS                       
Sbjct: 177 SSLLDMYARSE-NIQEARRVFDMLPARDVVSYTTILSGYTRLGLDEEALNLFRQLYNEGM 235

Query: 47  -------CILLNSDDVVAAFDFFQR---------LPIKDTASWNTMISGFVQKKNMAKAR 90
                   +LLN+   +++ D+ ++         LP    A  N++I  + +   +  +R
Sbjct: 236 QCNQVTFSVLLNALSGLSSMDYGKQVHGLILRRELPFF-MALQNSLIDMYSKCGKLLYSR 294

Query: 91  DLFLAMPEKNSVSWSAMISGYIECGQLDKAVELF-----KVAPVKSVVAWTAMISGYMKF 145
            +F  MPE++ VSW+AM+ GY   G   + V+LF     KV P    V   A++ GY   
Sbjct: 295 RVFDNMPERSVVSWNAMLMGYGRHGMAYEVVQLFRFMCDKVKP--DSVTLLAVLLGYSHG 352

Query: 146 GYVE 149
           G V+
Sbjct: 353 GLVD 356


>gi|224079057|ref|XP_002305733.1| predicted protein [Populus trichocarpa]
 gi|222848697|gb|EEE86244.1| predicted protein [Populus trichocarpa]
          Length = 571

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 206/545 (37%), Positives = 304/545 (55%), Gaps = 32/545 (5%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M+V+T V W S++A +A++ G   +A  LF ++ +  V                   + D
Sbjct: 59  MSVRTVVTWTSLIAAYARE-GLSDEAIRLFHEMDREGV-------------------SPD 98

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
            F    +    + N  +       N  +  D+     + N    +A++  Y +CG ++ A
Sbjct: 99  IFTITTVLHACACNGSLENGKDVHNYIRENDM-----QSNIFVCNALMDMYAKCGSMEDA 153

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLL 180
             +F   PVK +++W  MI GY K     NS   + L L   M+ L ++P+ ++L+ +L 
Sbjct: 154 NSVFLEMPVKDIISWNTMIGGYSK-----NSLPNEALSLFGDMV-LEMKPDGTTLACILP 207

Query: 181 GCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVT 240
            C+ L+SL  GK+VH  + ++    D      L+ MY KCG    A  LF  I  KD++T
Sbjct: 208 ACASLASLDRGKEVHGHILRNGFFSDQQVANALVDMYVKCGVPVLARLLFDMIPTKDLIT 267

Query: 241 WNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV 300
           W  MI+GY  HG G  A+  F++M+  G++PD ++F+++L AC+H+GL+D G ++F+ M 
Sbjct: 268 WTVMIAGYGMHGFGNNAITTFNEMRQAGIEPDEVSFISILYACSHSGLLDEGWRFFNVMQ 327

Query: 301 NDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLA 360
           ++  +  K +HY C+VDLL R+GKL  A   IK MP +P   I+G LLS CR+H  + LA
Sbjct: 328 DECNVKPKLEHYACIVDLLARSGKLAMAYKFIKSMPIEPDATIWGALLSGCRIHHDVKLA 387

Query: 361 EFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGT 420
           E  A ++F L P N  G YV LAN YA  +KW++V ++R  +    + K PG SWIEV +
Sbjct: 388 EKVAEHVFELEPEN-TGYYVLLANTYAEAEKWEEVKKLRQKIGRRGLKKNPGCSWIEVKS 446

Query: 421 VVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEK 480
            VH F +G+  HP+   I   LK L  +MK  GY P   +AL       KE  L  HSEK
Sbjct: 447 KVHIFLAGNSSHPQAKKIEVLLKRLRSKMKEEGYFPKTRYALINADSLQKETALCGHSEK 506

Query: 481 LAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCS 540
           LA+AFG++ +P    IRV KNLRVCGDCH   K+IS    REI++RD+ RFHHFKDG C 
Sbjct: 507 LAMAFGILNLPPARTIRVSKNLRVCGDCHEMAKFISKTLGREIVLRDSNRFHHFKDGVCC 566

Query: 541 CGDYW 545
           C  +W
Sbjct: 567 CRGFW 571



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 76/245 (31%), Positives = 129/245 (52%), Gaps = 12/245 (4%)

Query: 99  KNSVSW-----SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWA 153
           K  V W     + ++  Y +CG LD A+ +F +  V++VV WT++I+ Y + G      +
Sbjct: 26  KACVHWKTTFCNTLLDMYAKCGVLDGAILVFDLMSVRTVVTWTSLIAAYAREGL-----S 80

Query: 154 EDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPL 213
           ++ ++L   M   G+ P+  ++++VL  C+   SL+ GK VH  + ++ +  +      L
Sbjct: 81  DEAIRLFHEMDREGVSPDIFTITTVLHACACNGSLENGKDVHNYIRENDMQSNIFVCNAL 140

Query: 214 ISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDS 273
           + MY KCG +EDA  +FLE+  KD+++WN MI GY+++    +AL LF  M  E MKPD 
Sbjct: 141 MDMYAKCGSMEDANSVFLEMPVKDIISWNTMIGGYSKNSLPNEALSLFGDMVLE-MKPDG 199

Query: 274 ITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIK 333
            T   +L AC     +D G +    ++ + G  +       +VD+  + G  V A  L  
Sbjct: 200 TTLACILPACASLASLDRGKEVHGHILRN-GFFSDQQVANALVDMYVKCGVPVLARLLFD 258

Query: 334 KMPFK 338
            +P K
Sbjct: 259 MIPTK 263



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 89/167 (53%), Gaps = 7/167 (4%)

Query: 175 LSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ 234
           + S+L  C++   + LG+ VH    K+ +   TT    L+ MY KCG L+ A  +F  + 
Sbjct: 1   MVSILQACANCGDVSLGRAVHGSGVKACVHWKTTFCNTLLDMYAKCGVLDGAILVFDLMS 60

Query: 235 RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ 294
            + VVTW ++I+ YA+ G  ++A+RLF +M  EG+ PD  T   +L AC   G ++ G  
Sbjct: 61  VRTVVTWTSLIAAYAREGLSDEAIRLFHEMDREGVSPDIFTITTVLHACACNGSLENGKD 120

Query: 295 YFDSM-VNDYGIAAKPDHYTC--MVDLLGRAGKLVEAVDLIKKMPFK 338
             + +  ND     + + + C  ++D+  + G + +A  +  +MP K
Sbjct: 121 VHNYIRENDM----QSNIFVCNALMDMYAKCGSMEDANSVFLEMPVK 163


>gi|297600629|ref|NP_001049519.2| Os03g0241800 [Oryza sativa Japonica Group]
 gi|108707104|gb|ABF94899.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|255674356|dbj|BAF11433.2| Os03g0241800 [Oryza sativa Japonica Group]
          Length = 810

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 202/485 (41%), Positives = 291/485 (60%), Gaps = 13/485 (2%)

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLF-----LAMPEKNSVSWSAMISGYI 112
           A+  F+ +  +D  SWN MISGF       +A D+F     L  P+ ++ + ++++    
Sbjct: 176 AYQMFEEMQYRDVVSWNAMISGFAHAGLFGRAMDVFRELVALQCPKPDAGTMASILPSMG 235

Query: 113 ECGQLDKAV--ELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRP 170
           +    D A+   +F     K +++W AM++ Y       N    + ++L   M   GI P
Sbjct: 236 KARVEDIALLKGVFDEMRFKGLISWNAMLAVY-----TNNEMHVEAVELFMRMQKDGIEP 290

Query: 171 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 230
           +A +L++VL  C  +S+L LGK++H+++ +  +C        L+ MY  CG L++A  +F
Sbjct: 291 DAVTLATVLPSCGEVSALSLGKRIHEVIKRRRMCSSMLLENALMDMYANCGCLKEARDVF 350

Query: 231 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVD 290
             +  +DVV+W ++IS Y +HG G +A+ LF+KM  +G++PDSI FVA+L AC+HAGL+D
Sbjct: 351 DSMGTRDVVSWTSIISAYGRHGHGREAIDLFEKMCGQGLEPDSIAFVAILAACSHAGLLD 410

Query: 291 LGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSA 350
           +G  YF SM +++ IA K +HY CMVDLLGRAG + EA D I  MP KP   ++G LL A
Sbjct: 411 MGKHYFYSMTSEFHIAPKLEHYACMVDLLGRAGCIREAYDFIMVMPIKPNERVWGALLGA 470

Query: 351 CRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKM 410
           CR+H  +D+   AA +L  L P    G YV L+NIYA   +W DV+ +R  M+   + K+
Sbjct: 471 CRIHSNMDIGLLAADSLLRLAPKQ-TGYYVLLSNIYARAGRWADVSMVRSVMESKGIKKL 529

Query: 411 PGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVK 470
           PG S  E+G  VH F  GD  HP+   I++KL EL +R++  GY P++E  LH V EE K
Sbjct: 530 PGVSNAELGDRVHTFHIGDTSHPQSKMIYKKLSELLRRIREMGYNPEVEATLHDVEEEDK 589

Query: 471 EQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTR 530
           E  L  HSEKLAIAF LI    GTPIR+  NLR C DCH A K IS I  REII++D  R
Sbjct: 590 EGHLSVHSEKLAIAFLLINTNPGTPIRITMNLRTCSDCHHAAKLISTIAGREIILKDVNR 649

Query: 531 FHHFK 535
            H+ K
Sbjct: 650 IHYMK 654



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 78/300 (26%), Positives = 134/300 (44%), Gaps = 41/300 (13%)

Query: 123 LFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMM--IGLGIRPNASSLSSVLL 180
           +   +P ++ V +  ++ G         S   D L L   M   G    P+  +    L 
Sbjct: 76  VLDASPDRTTVFFNVLLRGL-----TAASLHRDALLLFASMRPQGHACFPDHYTYPLALK 130

Query: 181 GCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVT 240
            C+    L LG+Q+H    +  L  +       ISMY +CG  +DA ++F E+Q +DVV+
Sbjct: 131 SCAATDGLVLGRQIHSSTARLGLDGNVFVAHSAISMYARCGRPDDAYQMFEEMQYRDVVS 190

Query: 241 WNAMISGYAQHGKGEKALRLFDKMKD-EGMKPDSITFVALLLACNHAGLVDLGI--QYFD 297
           WNAMISG+A  G   +A+ +F ++   +  KPD+ T  ++L +   A + D+ +    FD
Sbjct: 191 WNAMISGFAHAGLFGRAMDVFRELVALQCPKPDAGTMASILPSMGKARVEDIALLKGVFD 250

Query: 298 SMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP---FKPQPAIFGTLLSAC--- 351
            M     I+     +  M+ +       VEAV+L  +M     +P      T+L +C   
Sbjct: 251 EMRFKGLIS-----WNAMLAVYTNNEMHVEAVELFMRMQKDGIEPDAVTLATVLPSCGEV 305

Query: 352 -------RVHKRLD--------LAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVA 396
                  R+H+ +         L E A M+++    AN  GC  +  +++ +M   D V+
Sbjct: 306 SALSLGKRIHEVIKRRRMCSSMLLENALMDMY----AN-CGCLKEARDVFDSMGTRDVVS 360



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 86/390 (22%), Positives = 158/390 (40%), Gaps = 96/390 (24%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKI-----PQPDVVSY-NIMLSCILLNSDD 54
           M  +  V+WN++++GFA   G    A ++F ++     P+PD  +  +I+ S      +D
Sbjct: 183 MQYRDVVSWNAMISGFA-HAGLFGRAMDVFRELVALQCPKPDAGTMASILPSMGKARVED 241

Query: 55  VVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWS----- 105
           +      F  +  K   SWN M++ +   +   +A +LF+ M     E ++V+ +     
Sbjct: 242 IALLKGVFDEMRFKGLISWNAMLAVYTNNEMHVEAVELFMRMQKDGIEPDAVTLATVLPS 301

Query: 106 ------------------------------AMISGYIECGQLDKAVELFKVAPVKSVVAW 135
                                         A++  Y  CG L +A ++F     + VV+W
Sbjct: 302 CGEVSALSLGKRIHEVIKRRRMCSSMLLENALMDMYANCGCLKEARDVFDSMGTRDVVSW 361

Query: 136 TAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVH 195
           T++IS Y + G+       + + L   M G G+ P++ +  ++L  CSH   L +GK   
Sbjct: 362 TSIISAYGRHGH-----GREAIDLFEKMCGQGLEPDSIAFVAILAACSHAGLLDMGKHY- 415

Query: 196 QLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGE 255
                                Y    +   A KL           +  M+    + G   
Sbjct: 416 --------------------FYSMTSEFHIAPKL---------EHYACMVDLLGRAGCIR 446

Query: 256 KALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK-PDHYTC 314
           +A   +D +    +KP+   + ALL AC     +D+G+   DS++    +A K   +Y  
Sbjct: 447 EA---YDFIMVMPIKPNERVWGALLGACRIHSNMDIGLLAADSLLR---LAPKQTGYYVL 500

Query: 315 MVDLLGRAGK-----LVEAV---DLIKKMP 336
           + ++  RAG+     +V +V     IKK+P
Sbjct: 501 LSNIYARAGRWADVSMVRSVMESKGIKKLP 530


>gi|356577059|ref|XP_003556647.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 821

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 214/534 (40%), Positives = 306/534 (57%), Gaps = 16/534 (2%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK----DTASWNTM 76
           G    A  +FD +    ++S+N M+S  + N   +  ++  F+RL       D+ +  ++
Sbjct: 295 GDTGSAALVFDSMCSRSLISWNAMISGYVQNGM-IPESYALFRRLVQSGSGFDSGTLVSL 353

Query: 77  ISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSV 132
           I G  Q  ++   R L   +     E + V  +A++  Y +CG + +A  +F     K+V
Sbjct: 354 IRGCSQTSDLENGRILHSCIIRKELESHLVLSTAIVDMYSKCGAIKQATIVFGRMGKKNV 413

Query: 133 VAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGK 192
           + WTAM+      G  +N +AED LKL   M    +  N+ +L S++  C+HL SL  G+
Sbjct: 414 ITWTAML-----VGLSQNGYAEDALKLFCQMQEEKVAANSVTLVSLVHCCAHLGSLTKGR 468

Query: 193 QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFL-EIQRKDVVTWNAMISGYAQH 251
            VH    +     D    + LI MY KCG +  A KLF  E   KDV+  N+MI GY  H
Sbjct: 469 TVHAHFIRHGYAFDAVITSALIDMYAKCGKIHSAEKLFNNEFHLKDVILCNSMIMGYGMH 528

Query: 252 GKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDH 311
           G G  AL ++ +M +E +KP+  TFV+LL AC+H+GLV+ G   F SM  D+ +  +  H
Sbjct: 529 GHGRYALGVYSRMIEERLKPNQTTFVSLLTACSHSGLVEEGKALFHSMERDHDVRPQHKH 588

Query: 312 YTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLN 371
           Y C+VDL  RAG+L EA +L+K+MPF+P   +   LLS CR HK  ++    A  L +L+
Sbjct: 589 YACLVDLHSRAGRLEEADELVKQMPFQPSTDVLEALLSGCRTHKNTNMGIQIADRLISLD 648

Query: 372 PANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRV 431
             N+ G YV L+NIYA  +KW+ V  IR  M+   + K+PGYS IEVG  V+ F + D  
Sbjct: 649 YLNS-GIYVMLSNIYAEARKWESVNYIRGLMRMQGMKKIPGYSLIEVGNKVYTFFASDDS 707

Query: 432 HPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVP 491
           HP    I++ L+ L   ++  GY+PD    L  V E +K +LL  HSE+LAIAFGL+  P
Sbjct: 708 HPSWADIYQLLENLRLEVEAEGYIPDTSCVLRDVNEPMKVKLLWGHSERLAIAFGLLSTP 767

Query: 492 LGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
            G+ I++ KNLRVC DCH  TKYIS I +REIIVRD  RFHHF +G CSC D+W
Sbjct: 768 CGSLIKITKNLRVCVDCHNVTKYISKIVQREIIVRDANRFHHFVNGKCSCNDFW 821



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 93/402 (23%), Positives = 174/402 (43%), Gaps = 84/402 (20%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVV--SYNIMLS---CILLNSDDV-------VA 57
           N+++AGF + +  + +   LF  +   D+   SY  M +   C  L  D+V         
Sbjct: 114 NAMIAGFLRNQQHM-EVPRLFRMMGSCDIEINSYTCMFALKACTDLLDDEVGMEIIRAAV 172

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQL 117
              F   L +      ++M++  V++  +A A+ +F  MPEK+ V W+++I GY++ G  
Sbjct: 173 RRGFHLHLYVG-----SSMVNFLVKRGYLADAQKVFDGMPEKDVVCWNSIIGGYVQKGLF 227

Query: 118 DKAVELF--------KVAPV-------------------------------KSVVAWTAM 138
            +++++F        + +PV                                 V   T++
Sbjct: 228 WESIQMFLEMIGGGLRPSPVTMANLLKACGQSGLKKVGMCAHSYVLALGMGNDVFVLTSL 287

Query: 139 ISGYMKFG--------------------------YVENSWAEDGLKLLRMMIGLGIRPNA 172
           +  Y   G                          YV+N    +   L R ++  G   ++
Sbjct: 288 VDMYSNLGDTGSAALVFDSMCSRSLISWNAMISGYVQNGMIPESYALFRRLVQSGSGFDS 347

Query: 173 SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLE 232
            +L S++ GCS  S L+ G+ +H  + +  L       T ++ MY KCG ++ A  +F  
Sbjct: 348 GTLVSLIRGCSQTSDLENGRILHSCIIRKELESHLVLSTAIVDMYSKCGAIKQATIVFGR 407

Query: 233 IQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 292
           + +K+V+TW AM+ G +Q+G  E AL+LF +M++E +  +S+T V+L+  C H G +  G
Sbjct: 408 MGKKNVITWTAMLVGLSQNGYAEDALKLFCQMQEEKVAANSVTLVSLVHCCAHLGSLTKG 467

Query: 293 IQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKK 334
                  +  +G A      + ++D+  + GK+  A  L   
Sbjct: 468 RTVHAHFIR-HGYAFDAVITSALIDMYAKCGKIHSAEKLFNN 508



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 79/317 (24%), Positives = 142/317 (44%), Gaps = 45/317 (14%)

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSW--------- 104
           A + F +  + +TA  N MI+GF++ +   +   LF  M     E NS +          
Sbjct: 98  ARNVFDQCSLPETAVCNAMIAGFLRNQQHMEVPRLFRMMGSCDIEINSYTCMFALKACTD 157

Query: 105 --------------------------SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAM 138
                                     S+M++  ++ G L  A ++F   P K VV W ++
Sbjct: 158 LLDDEVGMEIIRAAVRRGFHLHLYVGSSMVNFLVKRGYLADAQKVFDGMPEKDVVCWNSI 217

Query: 139 ISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLV 198
           I GY++ G     W  + +++   MIG G+RP+  +++++L  C      ++G   H  V
Sbjct: 218 IGGYVQKGLF---W--ESIQMFLEMIGGGLRPSPVTMANLLKACGQSGLKKVGMCAHSYV 272

Query: 199 FKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKAL 258
               +  D   LT L+ MY   GD   A  +F  +  + +++WNAMISGY Q+G   ++ 
Sbjct: 273 LALGMGNDVFVLTSLVDMYSNLGDTGSAALVFDSMCSRSLISWNAMISGYVQNGMIPESY 332

Query: 259 RLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDL 318
            LF ++   G   DS T V+L+  C+    ++ G +   S +    + +     T +VD+
Sbjct: 333 ALFRRLVQSGSGFDSGTLVSLIRGCSQTSDLENG-RILHSCIIRKELESHLVLSTAIVDM 391

Query: 319 LGRAGKLVEAVDLIKKM 335
             + G + +A  +  +M
Sbjct: 392 YSKCGAIKQATIVFGRM 408



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 90/187 (48%), Gaps = 5/187 (2%)

Query: 107 MISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGL 166
           +I  Y + G L  A  +F    +       AMI+G+++     N    +  +L RMM   
Sbjct: 85  LIRVYSDLGFLGHARNVFDQCSLPETAVCNAMIAGFLR-----NQQHMEVPRLFRMMGSC 139

Query: 167 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 226
            I  N+ +    L  C+ L   ++G ++ +   +          + +++   K G L DA
Sbjct: 140 DIEINSYTCMFALKACTDLLDDEVGMEIIRAAVRRGFHLHLYVGSSMVNFLVKRGYLADA 199

Query: 227 CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHA 286
            K+F  +  KDVV WN++I GY Q G   +++++F +M   G++P  +T   LL AC  +
Sbjct: 200 QKVFDGMPEKDVVCWNSIIGGYVQKGLFWESIQMFLEMIGGGLRPSPVTMANLLKACGQS 259

Query: 287 GLVDLGI 293
           GL  +G+
Sbjct: 260 GLKKVGM 266



 Score = 41.2 bits (95), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 36/147 (24%), Positives = 66/147 (44%), Gaps = 1/147 (0%)

Query: 192 KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQH 251
           K +H  + K+ +  ++     LI +Y   G L  A  +F +    +    NAMI+G+ ++
Sbjct: 64  KSIHAQIIKNWVSTESFLAAKLIRVYSDLGFLGHARNVFDQCSLPETAVCNAMIAGFLRN 123

Query: 252 GKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDH 311
            +  +  RLF  M    ++ +S T +  L AC      ++G++   + V   G       
Sbjct: 124 QQHMEVPRLFRMMGSCDIEINSYTCMFALKACTDLLDDEVGMEIIRAAVRR-GFHLHLYV 182

Query: 312 YTCMVDLLGRAGKLVEAVDLIKKMPFK 338
            + MV+ L + G L +A  +   MP K
Sbjct: 183 GSSMVNFLVKRGYLADAQKVFDGMPEK 209


>gi|357127388|ref|XP_003565363.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Brachypodium distachyon]
          Length = 814

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 210/551 (38%), Positives = 329/551 (59%), Gaps = 15/551 (2%)

Query: 3   VKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLN--SDDVVAAFD 60
             + V  N+ L  F  +   L + ++LF ++ + D VSYN+M++    N  +  V+  F 
Sbjct: 271 TSSNVFVNNSLLDFYSKCDCLDEMKKLFHEMIERDNVSYNVMIAGYAWNRCASIVLRLFR 330

Query: 61  FFQRLPIKDTA-SWNTMIS--GFVQKKNMAK---ARDLFLAMPEKNSVSWSAMISGYIEC 114
             Q L     A  + +++S  G V    + K   A+ + L +  ++ V  +A+I  Y +C
Sbjct: 331 EMQSLSFDRQALPYASLLSVAGSVPHIGIGKQIHAQLVLLGLSSEDLVG-NALIDMYSKC 389

Query: 115 GQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASS 174
           G LD A   F     K+ V+WTAMI+G      V+N   E+ L+L   M   G+ P+ ++
Sbjct: 390 GMLDAAKTNFINKNDKTGVSWTAMITGC-----VQNGQQEEALQLFCGMRRAGLSPDRAT 444

Query: 175 LSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ 234
            SS +   S+L+ + LG+Q+H  + +S       + + L+ MY KCG L++A + F E+ 
Sbjct: 445 FSSTIKASSNLAMIGLGRQLHSYLIRSGHMSSVFSGSALLDMYTKCGCLDEALQTFDEMP 504

Query: 235 RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ 294
            ++ ++WNA+IS YA +G+ + A+++F+ M   G KPDS+TF+++L AC+H GL +  ++
Sbjct: 505 ERNSISWNAVISAYAHYGQAKNAIKMFEGMLCYGFKPDSVTFLSVLSACSHNGLAEECMK 564

Query: 295 YFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVH 354
           YF+ M  +YGI+   +HY+C++D LGR G+  +  +++ +MPF+  P I+ ++L +CR H
Sbjct: 565 YFELMEYEYGISPWKEHYSCVIDTLGRVGRFDKVQEMLGEMPFEDDPIIWSSILHSCRTH 624

Query: 355 KRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYS 414
              DLA  AA  LF++   +A   YV L+NI+A   KW+D A ++  M++  + K  GYS
Sbjct: 625 GNQDLARVAAEKLFSMGSTDATP-YVILSNIFAKAGKWEDAAGVKKIMRDRGLRKETGYS 683

Query: 415 WIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLL 474
           W+EV   V+ F S D+ +P +  I ++L+ L K M   GY PD    L  V +++K + L
Sbjct: 684 WVEVKHKVYSFSSNDQTNPMITEIKDELERLYKEMDKQGYKPDTSCTLQQVDDDIKLESL 743

Query: 475 LFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHF 534
            +HSE+LAIAF LI  P GTPIRV KNL  C DCH A K +S I  R+IIVRD++RFHHF
Sbjct: 744 KYHSERLAIAFALINTPPGTPIRVMKNLSACVDCHSAIKMMSKIVNRDIIVRDSSRFHHF 803

Query: 535 KDGTCSCGDYW 545
           KDG CSCGDYW
Sbjct: 804 KDGFCSCGDYW 814



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 70/232 (30%), Positives = 111/232 (47%), Gaps = 10/232 (4%)

Query: 70  TASWNTMISGFVQKKNMAKARDLFLAMPEKNSV-SWSAMISGYIECGQLDKAVELFKVAP 128
           T   N ++   +    +A+AR LF  MP +N+  S + M+SGY   GQL  A  LF  +P
Sbjct: 34  TYRLNLLLHSLISSGRLAQARALFDQMPHRNNAFSLNRMLSGYSRSGQLSAAHHLFLSSP 93

Query: 129 --VKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVL---LGCS 183
             ++  V WT MI     F     + A D + L R M+  G+ P+  ++++VL       
Sbjct: 94  PHLRDAVTWTVMIGA---FASAPGARASDAVSLFRDMLREGVAPDRVTVATVLNLPPASG 150

Query: 184 HLSSLQLGKQVHQLVFKSPLCKDTTAL-TPLISMYCKCGDLEDACKLFLEIQRKDVVTWN 242
             ++  +   +H    K  L      +   L+  YCK G L  A ++F E+  +D VT+N
Sbjct: 151 GTAAAIIIASLHPFALKLGLLHSNVVVCNTLLDAYCKHGLLAAARRVFQEMPHRDSVTYN 210

Query: 243 AMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ 294
           AM+ G ++ G   +AL LF  M+ +G+     TF  +L      G + LG Q
Sbjct: 211 AMMMGCSKEGSHAEALDLFAAMRRKGLAATRFTFSTVLTVATGVGDLCLGRQ 262



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 90/354 (25%), Positives = 146/354 (41%), Gaps = 58/354 (16%)

Query: 21  GKLKDAQELFDKIP-QPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP--IKDTASWNTMI 77
           G+L  A+ LFD++P + +  S N MLS     S  + AA   F   P  ++D  +W  MI
Sbjct: 48  GRLAQARALFDQMPHRNNAFSLNRMLSG-YSRSGQLSAAHHLFLSSPPHLRDAVTWTVMI 106

Query: 78  SGFVQKKNMAKARD---------------------------------------------- 91
             F      A+A D                                              
Sbjct: 107 GAFASAPG-ARASDAVSLFRDMLREGVAPDRVTVATVLNLPPASGGTAAAIIIASLHPFA 165

Query: 92  LFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENS 151
           L L +   N V  + ++  Y + G L  A  +F+  P +  V + AM+ G  K    E S
Sbjct: 166 LKLGLLHSNVVVCNTLLDAYCKHGLLAAARRVFQEMPHRDSVTYNAMMMGCSK----EGS 221

Query: 152 WAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALT 211
            AE  L L   M   G+     + S+VL   + +  L LG+QVH LV ++    +     
Sbjct: 222 HAE-ALDLFAAMRRKGLAATRFTFSTVLTVATGVGDLCLGRQVHGLVARAT-SSNVFVNN 279

Query: 212 PLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKP 271
            L+  Y KC  L++  KLF E+  +D V++N MI+GYA +      LRLF +M+      
Sbjct: 280 SLLDFYSKCDCLDEMKKLFHEMIERDNVSYNVMIAGYAWNRCASIVLRLFREMQSLSFDR 339

Query: 272 DSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKL 325
            ++ + +LL        + +G Q    +V   G++++      ++D+  + G L
Sbjct: 340 QALPYASLLSVAGSVPHIGIGKQIHAQLVL-LGLSSEDLVGNALIDMYSKCGML 392


>gi|194696956|gb|ACF82562.1| unknown [Zea mays]
 gi|413957085|gb|AFW89734.1| selenium-binding protein-like protein [Zea mays]
          Length = 605

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 195/446 (43%), Positives = 275/446 (61%), Gaps = 8/446 (1%)

Query: 102 VSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLR 161
           VSW+ M+ G ++ G  D A  LF   P +++V+W AM+SGY+K          D L++  
Sbjct: 166 VSWTTMVGGLLKLGLFDDARVLFDGMPERNLVSWNAMMSGYVKACRFL-----DALEVFD 220

Query: 162 MMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCG 221
            M   G+  N    ++ ++ C+   +L  G++VH+ V +S +  D    T ++ MYCKCG
Sbjct: 221 EMRARGVDGNVFVAATAVVACTGAGALARGREVHRWVEQSGIQMDEKLATAVVDMYCKCG 280

Query: 222 DLEDACKLF--LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVAL 279
            +E+A ++F  L +  K + TWN MI G+A HG+GE AL+LF +M+ EG+ PD +T V +
Sbjct: 281 CVEEAWRVFEALPLAAKGLTTWNCMIGGFAVHGRGEDALKLFGRMEREGVAPDDVTLVNV 340

Query: 280 LLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKP 339
           L AC HAG++  G  YF+ +   YGI  K +HY CMVDL GRAG+L EA  +I+ MP +P
Sbjct: 341 LTACAHAGMLSEGRHYFNYVPQRYGIEPKMEHYGCMVDLYGRAGRLEEAKKVIQDMPMEP 400

Query: 340 QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIR 399
              + G L  A ++H  +DL E     +  L+P N+ G YV LAN+ A   +W+DVAR+R
Sbjct: 401 DVGVLGALFGASKIHGDVDLGEAIGWRVIELDPQNS-GRYVLLANLLATAGRWEDVARVR 459

Query: 400 LSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLE 459
             M E NV K  G S IEV   V EF+ G   HP    ++   +++ + ++  GYVPD  
Sbjct: 460 RLMDERNVSKEAGRSVIEVQGEVCEFQCGGLCHPRAEEVYAMARDMMREIRAEGYVPDTR 519

Query: 460 FALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIE 519
             LHA+ EE KE  LL+HSEKLAIAFGL+    G  +R+ KNLRVC DCH ATK++S + 
Sbjct: 520 DVLHAIAEEEKETPLLYHSEKLAIAFGLLHTRPGDTMRITKNLRVCRDCHEATKFVSRVF 579

Query: 520 KREIIVRDTTRFHHFKDGTCSCGDYW 545
           +R+I+VRD  RFHHFKDG CSC DYW
Sbjct: 580 ERQIVVRDRNRFHHFKDGQCSCKDYW 605



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 66/263 (25%), Positives = 115/263 (43%), Gaps = 29/263 (11%)

Query: 7   VNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLS-----CILLNSDDVVAAFDF 61
           V+W +++ G  K  G   DA+ LFD +P+ ++VS+N M+S     C  L   D +  FD 
Sbjct: 166 VSWTTMVGGLLKL-GLFDDARVLFDGMPERNLVSWNAMMSGYVKACRFL---DALEVFDE 221

Query: 62  FQRLPIKDTASWNTMISGFVQKKN-MAKARDLF-------LAMPEKNSVSWSAMISGYIE 113
            +   +                   +A+ R++        + M EK +   +A++  Y +
Sbjct: 222 MRARGVDGNVFVAATAVVACTGAGALARGREVHRWVEQSGIQMDEKLA---TAVVDMYCK 278

Query: 114 CGQLDKAVELFKVAPV--KSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPN 171
           CG +++A  +F+  P+  K +  W  MI G+   G       ED LKL   M   G+ P+
Sbjct: 279 CGCVEEAWRVFEALPLAAKGLTTWNCMIGGFAVHGR-----GEDALKLFGRMEREGVAPD 333

Query: 172 ASSLSSVLLGCSHLSSLQLGKQVHQLV-FKSPLCKDTTALTPLISMYCKCGDLEDACKLF 230
             +L +VL  C+H   L  G+     V  +  +         ++ +Y + G LE+A K+ 
Sbjct: 334 DVTLVNVLTACAHAGMLSEGRHYFNYVPQRYGIEPKMEHYGCMVDLYGRAGRLEEAKKVI 393

Query: 231 LEI-QRKDVVTWNAMISGYAQHG 252
            ++    DV    A+      HG
Sbjct: 394 QDMPMEPDVGVLGALFGASKIHG 416


>gi|297804050|ref|XP_002869909.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297315745|gb|EFH46168.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 595

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 195/442 (44%), Positives = 280/442 (63%), Gaps = 7/442 (1%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI 164
           ++++  Y  CG +  A ++F   P K +VAW ++I+G+      EN   E+ L L   M 
Sbjct: 160 NSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGF-----AENGKPEEALALYTEMD 214

Query: 165 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 224
             GI+P+  ++ S+L  C+ + +L LGK+ H  + K  L ++  +   L+ +Y +CG +E
Sbjct: 215 LKGIKPDGFTIVSLLSACAKIGALTLGKRFHVYMIKVGLTRNLHSSNVLLDLYARCGRVE 274

Query: 225 DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKD-EGMKPDSITFVALLLAC 283
           +A  LF E+  K+ V+W ++I G A +G G++A+ LF  M+  EG+ P  ITFV +L AC
Sbjct: 275 EAKTLFDEMVDKNSVSWTSLIVGLAVNGLGKEAIELFKNMESKEGLLPCEITFVGILYAC 334

Query: 284 NHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAI 343
           +H G+V  G +YF  M  +Y I  + +H+ CMVDLL RAG++ +A + I KMP +P   I
Sbjct: 335 SHCGMVKEGFEYFRRMSEEYKIEPRIEHFGCMVDLLARAGQVKKAYEYILKMPMQPNVVI 394

Query: 344 FGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMK 403
           + TLL AC VH   DLAE A M +  L P N +G YV L+N+YA+ ++W DV +IR  M 
Sbjct: 395 WRTLLGACTVHGDSDLAELARMKILQLEP-NHSGDYVLLSNMYASEQRWSDVQKIRKQML 453

Query: 404 ENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALH 463
            + V K+PG+S +EVG  VHEF  GD+ HP+   I+ KLKE+  R++L GYVP +     
Sbjct: 454 RDGVRKVPGHSLVEVGNRVHEFLMGDKSHPQNDMIYAKLKEMTDRLRLEGYVPQISNVYV 513

Query: 464 AVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREI 523
            V EE KE  L++HSEK+AIAF LI  P   PIRV KNL+VC DCH A K +S +  REI
Sbjct: 514 DVEEEEKENALVYHSEKIAIAFMLISTPERWPIRVVKNLKVCADCHLAIKLVSKVYNREI 573

Query: 524 IVRDTTRFHHFKDGTCSCGDYW 545
           +VRD +RFHHFK+G+CSC DYW
Sbjct: 574 VVRDRSRFHHFKNGSCSCQDYW 595



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 65/206 (31%), Positives = 111/206 (53%), Gaps = 7/206 (3%)

Query: 131 SVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLG-IRPNASSLSSVLLGCSHLSSLQ 189
           +V  W  +I GY + G   NS +   + L R M   G + P+  +   +L     ++ ++
Sbjct: 84  NVFIWNTLIRGYAEIG---NSVS--AVSLYREMRASGFVEPDTHTYPFLLKAVGKMADVR 138

Query: 190 LGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYA 249
           LG+ +H +V +S           L+ +Y  CGD+  A K+F ++  KD+V WN++I+G+A
Sbjct: 139 LGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFA 198

Query: 250 QHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKP 309
           ++GK E+AL L+ +M  +G+KPD  T V+LL AC   G + LG ++   M+   G+    
Sbjct: 199 ENGKPEEALALYTEMDLKGIKPDGFTIVSLLSACAKIGALTLGKRFHVYMIK-VGLTRNL 257

Query: 310 DHYTCMVDLLGRAGKLVEAVDLIKKM 335
                ++DL  R G++ EA  L  +M
Sbjct: 258 HSSNVLLDLYARCGRVEEAKTLFDEM 283



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 61/286 (21%), Positives = 119/286 (41%), Gaps = 57/286 (19%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIP----QPDVVSYNIMLSCILLNSDDVV 56
           M  K  V WNSV+ GFA + GK ++A  L+ ++     +PD   + I+    LL++   +
Sbjct: 182 MPEKDLVAWNSVINGFA-ENGKPEEALALYTEMDLKGIKPD--GFTIV---SLLSACAKI 235

Query: 57  AAFDFFQRLPI--------KDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMI 108
            A    +R  +        ++  S N ++  + +   + +A+ LF  M +KNSVSW+++I
Sbjct: 236 GALTLGKRFHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLI 295

Query: 109 SGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGI 168
            G    G   +A+ELFK    K                                    G+
Sbjct: 296 VGLAVNGLGKEAIELFKNMESKE-----------------------------------GL 320

Query: 169 RPNASSLSSVLLGCSHLSSLQLG-KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC 227
            P   +   +L  CSH   ++ G +   ++  +  +         ++ +  + G ++ A 
Sbjct: 321 LPCEITFVGILYACSHCGMVKEGFEYFRRMSEEYKIEPRIEHFGCMVDLLARAGQVKKAY 380

Query: 228 KLFLEI-QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPD 272
           +  L++  + +VV W  ++     HG  +  L    +MK   ++P+
Sbjct: 381 EYILKMPMQPNVVIWRTLLGACTVHGDSD--LAELARMKILQLEPN 424


>gi|15218900|ref|NP_176180.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806498|sp|Q0WQW5.2|PPR85_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g59720, mitochondrial; Flags: Precursor
 gi|332195486|gb|AEE33607.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 638

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 198/455 (43%), Positives = 280/455 (61%), Gaps = 20/455 (4%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI 164
           + +I  Y  CG LD A ++F   P +S+V+W +MI   ++FG  +++     L+L R M 
Sbjct: 190 NGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRFGEYDSA-----LQLFREM- 243

Query: 165 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKS---PLCKDTTALTPLISMYCKCG 221
                P+  ++ SVL  C+ L SL LG   H  + +     +  D      LI MYCKCG
Sbjct: 244 QRSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCG 303

Query: 222 DLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKD--EGMKPDSITFVAL 279
            L  A ++F  +Q++D+ +WNAMI G+A HG+ E+A+  FD+M D  E ++P+S+TFV L
Sbjct: 304 SLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMVDKRENVRPNSVTFVGL 363

Query: 280 LLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKP 339
           L+ACNH G V+ G QYFD MV DY I    +HY C+VDL+ RAG + EA+D++  MP KP
Sbjct: 364 LIACNHRGFVNKGRQYFDMMVRDYCIEPALEHYGCIVDLIARAGYITEAIDMVMSMPMKP 423

Query: 340 QPAIFGTLLSAC-RVHKRLDLAEFAAMNLFNL------NPANAAGCYVQLANIYAAMKKW 392
              I+ +LL AC +    ++L+E  A N+         +  N +G YV L+ +YA+  +W
Sbjct: 424 DAVIWRSLLDACCKKGASVELSEEIARNIIGTKEDNESSNGNCSGAYVLLSRVYASASRW 483

Query: 393 DDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLA 452
           +DV  +R  M E+ + K PG S IE+  + HEF +GD  HP+   I+++LK ++ R++  
Sbjct: 484 NDVGIVRKLMSEHGIRKEPGCSSIEINGISHEFFAGDTSHPQTKQIYQQLKVIDDRLRSI 543

Query: 453 GYVPDLEFA--LHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHR 510
           GY+PD   A  + A  +  KE  L  HSE+LAIAFGLI +P  TPIR+FKNLRVC DCH 
Sbjct: 544 GYLPDRSQAPLVDATNDGSKEYSLRLHSERLAIAFGLINLPPQTPIRIFKNLRVCNDCHE 603

Query: 511 ATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
            TK IS +   EIIVRD  RFHHFKDG+CSC DYW
Sbjct: 604 VTKLISKVFNTEIIVRDRVRFHHFKDGSCSCLDYW 638



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 83/177 (46%), Gaps = 6/177 (3%)

Query: 117 LDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLG-IRPNASSL 175
           ++ A  +F      S   W  +I         + S  E+   L R M+  G   P+  + 
Sbjct: 99  VNYAFRVFDSIENHSSFMWNTLIRACAH----DVSRKEEAFMLYRKMLERGESSPDKHTF 154

Query: 176 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR 235
             VL  C+++     GKQVH  + K     D      LI +Y  CG L+ A K+F E+  
Sbjct: 155 PFVLKACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPE 214

Query: 236 KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 292
           + +V+WN+MI    + G+ + AL+LF +M+    +PD  T  ++L AC   G + LG
Sbjct: 215 RSLVSWNSMIDALVRFGEYDSALQLFREMQ-RSFEPDGYTMQSVLSACAGLGSLSLG 270



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/251 (21%), Positives = 114/251 (45%), Gaps = 30/251 (11%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILL--NSDDVVAAFDFFQRLPIKDTASWNTMIS 78
           G L  A+++FD++P+  +VS+N M+  ++     D  +  F   QR    D  +  +++S
Sbjct: 200 GCLDLARKVFDEMPERSLVSWNSMIDALVRFGEYDSALQLFREMQRSFEPDGYTMQSVLS 259

Query: 79  ----------GFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAP 128
                     G      + +  D+ +AM   + +  +++I  Y +CG L  A ++F+   
Sbjct: 260 ACAGLGSLSLGTWAHAFLLRKCDVDVAM---DVLVKNSLIEMYCKCGSLRMAEQVFQGMQ 316

Query: 129 VKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGL--GIRPNASSLSSVLLGCSHLS 186
            + + +W AMI G+   G      AE+ +     M+     +RPN+ +   +L+ C+H  
Sbjct: 317 KRDLASWNAMILGFATHGR-----AEEAMNFFDRMVDKRENVRPNSVTFVGLLIACNHRG 371

Query: 187 SLQLGKQVHQLVFK----SPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK-DVVTW 241
            +  G+Q   ++ +     P  +    +  LI+   + G + +A  + + +  K D V W
Sbjct: 372 FVNKGRQYFDMMVRDYCIEPALEHYGCIVDLIA---RAGYITEAIDMVMSMPMKPDAVIW 428

Query: 242 NAMISGYAQHG 252
            +++    + G
Sbjct: 429 RSLLDACCKKG 439


>gi|222624541|gb|EEE58673.1| hypothetical protein OsJ_10095 [Oryza sativa Japonica Group]
          Length = 669

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 202/485 (41%), Positives = 291/485 (60%), Gaps = 13/485 (2%)

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLF-----LAMPEKNSVSWSAMISGYI 112
           A+  F+ +  +D  SWN MISGF       +A D+F     L  P+ ++ + ++++    
Sbjct: 66  AYQMFEEMQYRDVVSWNAMISGFAHAGLFGRAMDVFRELVALQCPKPDAGTMASILPSMG 125

Query: 113 ECGQLDKAV--ELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRP 170
           +    D A+   +F     K +++W AM++ Y       N    + ++L   M   GI P
Sbjct: 126 KARVEDIALLKGVFDEMRFKGLISWNAMLAVY-----TNNEMHVEAVELFMRMQKDGIEP 180

Query: 171 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 230
           +A +L++VL  C  +S+L LGK++H+++ +  +C        L+ MY  CG L++A  +F
Sbjct: 181 DAVTLATVLPSCGEVSALSLGKRIHEVIKRRRMCSSMLLENALMDMYANCGCLKEARDVF 240

Query: 231 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVD 290
             +  +DVV+W ++IS Y +HG G +A+ LF+KM  +G++PDSI FVA+L AC+HAGL+D
Sbjct: 241 DSMGTRDVVSWTSIISAYGRHGHGREAIDLFEKMCGQGLEPDSIAFVAILAACSHAGLLD 300

Query: 291 LGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSA 350
           +G  YF SM +++ IA K +HY CMVDLLGRAG + EA D I  MP KP   ++G LL A
Sbjct: 301 MGKHYFYSMTSEFHIAPKLEHYACMVDLLGRAGCIREAYDFIMVMPIKPNERVWGALLGA 360

Query: 351 CRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKM 410
           CR+H  +D+   AA +L  L P    G YV L+NIYA   +W DV+ +R  M+   + K+
Sbjct: 361 CRIHSNMDIGLLAADSLLRLAPKQ-TGYYVLLSNIYARAGRWADVSMVRSVMESKGIKKL 419

Query: 411 PGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVK 470
           PG S  E+G  VH F  GD  HP+   I++KL EL +R++  GY P++E  LH V EE K
Sbjct: 420 PGVSNAELGDRVHTFHIGDTSHPQSKMIYKKLSELLRRIREMGYNPEVEATLHDVEEEDK 479

Query: 471 EQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTR 530
           E  L  HSEKLAIAF LI    GTPIR+  NLR C DCH A K IS I  REII++D  R
Sbjct: 480 EGHLSVHSEKLAIAFLLINTNPGTPIRITMNLRTCSDCHHAAKLISTIAGREIILKDVNR 539

Query: 531 FHHFK 535
            H+ K
Sbjct: 540 IHYMK 544



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 71/256 (27%), Positives = 119/256 (46%), Gaps = 34/256 (13%)

Query: 165 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 224
           G G+ P    L      C+    L LG+Q+H    +  L  +       ISMY +CG  +
Sbjct: 5   GPGLLPGPLHLPVGFKSCAATDGLVLGRQIHSSTARLGLDGNVFVAHSAISMYARCGRPD 64

Query: 225 DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKD-EGMKPDSITFVALLLAC 283
           DA ++F E+Q +DVV+WNAMISG+A  G   +A+ +F ++   +  KPD+ T  ++L + 
Sbjct: 65  DAYQMFEEMQYRDVVSWNAMISGFAHAGLFGRAMDVFRELVALQCPKPDAGTMASILPSM 124

Query: 284 NHAGLVDLGI--QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP---FK 338
             A + D+ +    FD M     I+     +  M+ +       VEAV+L  +M     +
Sbjct: 125 GKARVEDIALLKGVFDEMRFKGLIS-----WNAMLAVYTNNEMHVEAVELFMRMQKDGIE 179

Query: 339 PQPAIFGTLLSAC----------RVHKRLD--------LAEFAAMNLFNLNPANAAGCYV 380
           P      T+L +C          R+H+ +         L E A M+++    AN  GC  
Sbjct: 180 PDAVTLATVLPSCGEVSALSLGKRIHEVIKRRRMCSSMLLENALMDMY----AN-CGCLK 234

Query: 381 QLANIYAAMKKWDDVA 396
           +  +++ +M   D V+
Sbjct: 235 EARDVFDSMGTRDVVS 250



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/238 (23%), Positives = 101/238 (42%), Gaps = 51/238 (21%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKI-----PQPDVVSY-NIMLSCILLNSDD 54
           M  +  V+WN++++GFA   G    A ++F ++     P+PD  +  +I+ S      +D
Sbjct: 73  MQYRDVVSWNAMISGFA-HAGLFGRAMDVFRELVALQCPKPDAGTMASILPSMGKARVED 131

Query: 55  VVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM----------------PE 98
           +      F  +  K   SWN M++ +   +   +A +LF+ M                P 
Sbjct: 132 IALLKGVFDEMRFKGLISWNAMLAVYTNNEMHVEAVELFMRMQKDGIEPDAVTLATVLPS 191

Query: 99  KNSVSW-----------------------SAMISGYIECGQLDKAVELFKVAPVKSVVAW 135
              VS                        +A++  Y  CG L +A ++F     + VV+W
Sbjct: 192 CGEVSALSLGKRIHEVIKRRRMCSSMLLENALMDMYANCGCLKEARDVFDSMGTRDVVSW 251

Query: 136 TAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ 193
           T++IS Y + G+       + + L   M G G+ P++ +  ++L  CSH   L +GK 
Sbjct: 252 TSIISAYGRHGH-----GREAIDLFEKMCGQGLEPDSIAFVAILAACSHAGLLDMGKH 304


>gi|302785461|ref|XP_002974502.1| hypothetical protein SELMODRAFT_101093 [Selaginella moellendorffii]
 gi|300158100|gb|EFJ24724.1| hypothetical protein SELMODRAFT_101093 [Selaginella moellendorffii]
          Length = 615

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 200/533 (37%), Positives = 314/533 (58%), Gaps = 15/533 (2%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRL----PIKDTASWNTM 76
           G L +A+ +FD +   +V S+ ++++   + S   V A   F R+     + D  +    
Sbjct: 90  GSLVEAKRVFDAMQHKNVFSWTMLMAG-FVQSGRGVEAIQLFHRMCQEGELPDRVALLKF 148

Query: 77  ISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSV 132
           I      K +++ R++  A      + + V+ +A+I+ Y +CG + +A  +F   P K+V
Sbjct: 149 IDSCGAAKALSQGREIHSAAASCGMDSDLVTANAIINMYGKCGSIGEAFAVFTRMPEKNV 208

Query: 133 VAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGK 192
           ++W+ MI+ +      +N  A++ L   ++M   G+  +  +  SVL   + + +L+LGK
Sbjct: 209 ISWSTMIAAF-----CQNELADEALLFFKLMQQEGMELDRITYVSVLDAYTSVGALELGK 263

Query: 193 QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHG 252
            +H  +  + L         L++MY KCG  +DA  +F  +  K+VV+WNAM++ Y Q+G
Sbjct: 264 ALHVRIVYAGLDTSIVVGNTLVNMYGKCGSPDDARDVFDSMVEKNVVSWNAMLAAYGQNG 323

Query: 253 KGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY 312
           +  +AL LFD M  EG++P+ ITFV +L  C+H+G     + +F  M  D+GI  +  H+
Sbjct: 324 RSREALALFDSMDLEGVRPNDITFVTILYCCSHSGKFKDAVSHFVEMRQDFGITPREVHF 383

Query: 313 TCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNP 372
            C++D+LGR+GKL EA +LI+ MP      ++ +LL AC  HK  D A  AA   F   P
Sbjct: 384 GCLIDMLGRSGKLEEAEELIQAMPVPADAVLWTSLLCACVTHKDEDRAARAAEEAFQREP 443

Query: 373 ANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVH 432
             AA  Y+ L+N+YAA+KKWD+ A++R  M++  V K  G SWIE+   VHEF +GD +H
Sbjct: 444 RCAAA-YIMLSNLYAALKKWDEAAKVRKRMEQAGVRKQAGRSWIEIDKQVHEFVAGDSIH 502

Query: 433 PELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPL 492
           P+   I + L+ L   M++ GY PD +  +H++ EE K+++L +HSEKLA+AFG+   P 
Sbjct: 503 PDKSRIFKTLQRLMSEMRIKGYEPDRKVVIHSMEEEEKDEVLFYHSEKLAVAFGIASTPP 562

Query: 493 GTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
            TP+ + KNLRVC DCH A K+IS +E R I VRD+ RFHHF  G CSCGDYW
Sbjct: 563 RTPLCIVKNLRVCSDCHSAIKFISGVEGRRITVRDSNRFHHFDRGECSCGDYW 615



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 77/313 (24%), Positives = 139/313 (44%), Gaps = 42/313 (13%)

Query: 107 MISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGL 166
           ++  Y +CG L +A  +F     K+V +WT +++G+++ G        + ++L   M   
Sbjct: 82  LVDMYGKCGSLVEAKRVFDAMQHKNVFSWTMLMAGFVQSGR-----GVEAIQLFHRMCQE 136

Query: 167 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 226
           G  P+  +L   +  C    +L  G+++H       +  D      +I+MY KCG + +A
Sbjct: 137 GELPDRVALLKFIDSCGAAKALSQGREIHSAAASCGMDSDLVTANAIINMYGKCGSIGEA 196

Query: 227 CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHA 286
             +F  +  K+V++W+ MI+ + Q+   ++AL  F  M+ EGM+ D IT+V++L A    
Sbjct: 197 FAVFTRMPEKNVISWSTMIAAFCQNELADEALLFFKLMQQEGMELDRITYVSVLDAYTSV 256

Query: 287 GLVDLG---------------IQYFDSMVNDYGIAAKPD---------------HYTCMV 316
           G ++LG               I   +++VN YG    PD                +  M+
Sbjct: 257 GALELGKALHVRIVYAGLDTSIVVGNTLVNMYGKCGSPDDARDVFDSMVEKNVVSWNAML 316

Query: 317 DLLGRAGKLVEAVDLIKKMPF---KPQPAIFGTLLSACRVHKRLD--LAEFAAMNL-FNL 370
              G+ G+  EA+ L   M     +P    F T+L  C    +    ++ F  M   F +
Sbjct: 317 AAYGQNGRSREALALFDSMDLEGVRPNDITFVTILYCCSHSGKFKDAVSHFVEMRQDFGI 376

Query: 371 NPANAA-GCYVQL 382
            P     GC + +
Sbjct: 377 TPREVHFGCLIDM 389



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 87/172 (50%), Gaps = 1/172 (0%)

Query: 167 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 226
           G       L  ++  C+   +L+ G+++H+ +    L +       L+ MY KCG L +A
Sbjct: 36  GAAGGTGDLEQLIRRCAGAKALEEGRRIHRWMDSGTLDRPRFLSNLLVDMYGKCGSLVEA 95

Query: 227 CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHA 286
            ++F  +Q K+V +W  +++G+ Q G+G +A++LF +M  EG  PD +  +  + +C  A
Sbjct: 96  KRVFDAMQHKNVFSWTMLMAGFVQSGRGVEAIQLFHRMCQEGELPDRVALLKFIDSCGAA 155

Query: 287 GLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 338
             +  G +   S     G+ +       ++++ G+ G + EA  +  +MP K
Sbjct: 156 KALSQG-REIHSAAASCGMDSDLVTANAIINMYGKCGSIGEAFAVFTRMPEK 206


>gi|414879360|tpg|DAA56491.1| TPA: hypothetical protein ZEAMMB73_164599 [Zea mays]
          Length = 520

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 187/423 (44%), Positives = 269/423 (63%), Gaps = 6/423 (1%)

Query: 123 LFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGC 182
           +F   P + VV WT++++G  + G    +     ++    M+  G++P+  ++ + L  C
Sbjct: 104 VFDEMPRRDVVTWTSLLTGLARAGAHGAA-----VRAYHGMVASGVQPDEFAVPAALSSC 158

Query: 183 SHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWN 242
           +  ++L LG+ VH    +  L    +    L+SMY K G L DA  +F  +  +  +TW 
Sbjct: 159 AASTALDLGRSVHAAAVRLGLRPFRSVENSLVSMYAKTGALRDARAVFDAMPARCTITWT 218

Query: 243 AMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVND 302
           A+I GYAQ+G+G ++L ++  M   G +PD +TF+ LL AC+HAGLVD G  +F SMV  
Sbjct: 219 ALIVGYAQNGRGRQSLEVYADMVRSGCRPDYVTFIGLLFACSHAGLVDAGRAHFRSMVPV 278

Query: 303 YGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEF 362
           YGIA  PDHY CMVDLLGRAG+L EA+DL+ +   +    ++ +LL ACRVH+  +LAE 
Sbjct: 279 YGIAPGPDHYACMVDLLGRAGRLDEAMDLLNRSSTELDATVWKSLLGACRVHQNAELAER 338

Query: 363 AAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVV 422
           AA  ++ L+PA+A   YV L+N+Y+  ++W DVARIR  MK   V K PG SW+ V  + 
Sbjct: 339 AAEMVWRLDPADAVP-YVMLSNLYSRARRWGDVARIRALMKARGVTKEPGCSWVGVNGIT 397

Query: 423 HEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLA 482
           H F   DR HP    I+ K++E+ +R+++ GYVPD ++AL     E +++ L +HSE+LA
Sbjct: 398 HLFHVEDRDHPRAAEIYRKVEEMTERIRVEGYVPDTDWALQDEVPEWRQRGLAYHSERLA 457

Query: 483 IAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCG 542
           +AFGL+ VP   PIRVFKNLRVCGDCH A K ++ +  REII+RD   FHH KDG CSCG
Sbjct: 458 VAFGLLAVPAAAPIRVFKNLRVCGDCHTAIKMVAKVYGREIILRDANCFHHMKDGECSCG 517

Query: 543 DYW 545
           DYW
Sbjct: 518 DYW 520



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 51/242 (21%), Positives = 96/242 (39%), Gaps = 18/242 (7%)

Query: 29  LFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAK 88
           +FD++P+ DVV++  +L+  L  +    AA   +  +           +   +     + 
Sbjct: 104 VFDEMPRRDVVTWTSLLTG-LARAGAHGAAVRAYHGMVASGVQPDEFAVPAALSSCAAST 162

Query: 89  ARDL---------FLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMI 139
           A DL          L +    SV  ++++S Y + G L  A  +F   P +  + WTA+I
Sbjct: 163 ALDLGRSVHAAAVRLGLRPFRSVE-NSLVSMYAKTGALRDARAVFDAMPARCTITWTALI 221

Query: 140 SGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGK-QVHQLV 198
                 GY +N      L++   M+  G RP+  +   +L  CSH   +  G+     +V
Sbjct: 222 -----VGYAQNGRGRQSLEVYADMVRSGCRPDYVTFIGLLFACSHAGLVDAGRAHFRSMV 276

Query: 199 FKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK-DVVTWNAMISGYAQHGKGEKA 257
               +         ++ +  + G L++A  L      + D   W +++     H   E A
Sbjct: 277 PVYGIAPGPDHYACMVDLLGRAGRLDEAMDLLNRSSTELDATVWKSLLGACRVHQNAELA 336

Query: 258 LR 259
            R
Sbjct: 337 ER 338


>gi|357470275|ref|XP_003605422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355506477|gb|AES87619.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 839

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 195/441 (44%), Positives = 282/441 (63%), Gaps = 6/441 (1%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI 164
           + ++S Y + G+++ A + F V   K++V+ T +    +K  +  NS  E  L      +
Sbjct: 405 NGLVSVYAKSGRMESARKCFDVLFEKNLVSETVVDDTNVK-DFNLNS--EQDLDREVEYV 461

Query: 165 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 224
           G G+  ++ + +S+L G + + ++  G+Q+H +V K     D +    LISMY KCG+ E
Sbjct: 462 GSGV--SSFTYASLLSGAACIGTIGKGEQIHAMVVKIGFRTDLSVNNALISMYSKCGNKE 519

Query: 225 DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 284
            A ++F +++  +V+TW ++I+G+A+HG   KAL LF  M + G+KP+ +T++A+L AC+
Sbjct: 520 AALQVFNDMEDCNVITWTSIINGFAKHGFASKALELFYNMLETGVKPNDVTYIAVLSACS 579

Query: 285 HAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIF 344
           H GL+D   ++F SM +++GI  + +HY CMVDLLGR+G L EA++ I  MPF     ++
Sbjct: 580 HVGLIDEAWKHFTSMRDNHGIVPRMEHYACMVDLLGRSGLLSEAIEFINSMPFDADALVW 639

Query: 345 GTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKE 404
            T L +CRVH+   L E AA  +    P + A  Y+ L+N+YA   +W+DVA IR +MK+
Sbjct: 640 RTFLGSCRVHRNTKLGEHAAKMILEREPHDPA-TYILLSNLYATEGRWEDVAAIRKNMKQ 698

Query: 405 NNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHA 464
             + K  G SWIEV   VH+F  GD +HP+   I+EKL EL  ++K  GYVP+ +F LH 
Sbjct: 699 KQITKEAGSSWIEVENQVHKFHVGDTLHPKAQQIYEKLDELALKIKNVGYVPNTDFVLHD 758

Query: 465 VGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREII 524
           V +E KEQ L  HSEKLA+AF LI  P   PIRVFKNLRVCGDCH A KYIS +  REI+
Sbjct: 759 VEDEQKEQYLFQHSEKLAVAFALISTPNPKPIRVFKNLRVCGDCHTAIKYISMVSGREIV 818

Query: 525 VRDTTRFHHFKDGTCSCGDYW 545
           VRD  RFHH KDGTCSC DYW
Sbjct: 819 VRDANRFHHMKDGTCSCNDYW 839



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 91/354 (25%), Positives = 164/354 (46%), Gaps = 62/354 (17%)

Query: 32  KIPQPDVVSYNIMLSCILLNS--------DDVVAAFDFFQRL--PIKDTASWNTMISGFV 81
           K+    + + N+ L  +LLNS        +D + AF  FQ +    +D  S++++IS F 
Sbjct: 72  KLLHHKLTTSNLPLDTLLLNSLITLYSKSNDPITAFSIFQSMENSKRDVVSYSSIISCFA 131

Query: 82  QKKNMAKARDLFLAMPEKNSV-----SWSAMI---------------------SGYIEC- 114
             +N  KA ++F  +  ++ V      ++A+I                     +GY +  
Sbjct: 132 NNRNCLKAVEMFDQLLLQDGVYPNEYCFTAVIRACLKGGFFKTGLCLFGFVLKTGYFDSH 191

Query: 115 -----------------GQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGL 157
                              L+ A ++F     K+VV WT MI+   ++GY  N  A D  
Sbjct: 192 VCVGCELIDMFVKGCSLADLESARKVFDKMREKNVVTWTLMITRLAQYGY--NDEAID-- 247

Query: 158 KLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMY 217
             L M++  G  P+  +L+ ++  C+ +  L LGK++H  V +S L  D      L+ MY
Sbjct: 248 LFLEMLVSSGYVPDRFTLTGLISVCAEIQFLSLGKELHSWVIRSGLVLDLCVGCSLVDMY 307

Query: 218 CKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKG--EKALRLFDKMKDE-GMKPDSI 274
            KCG +++A K+F  ++  +V++W A+++GY + G G   +A+R+F  M  + G+ P+  
Sbjct: 308 AKCGLVQEARKVFDGMREHNVMSWTALVNGYVRGGGGYEREAMRMFSNMLLQGGVAPNCF 367

Query: 275 TFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEA 328
           TF  +L AC      D G Q     +   G++A       +V +  ++G++  A
Sbjct: 368 TFSGVLKACASLPDFDFGEQVHGQTIK-LGLSAIDCVGNGLVSVYAKSGRMESA 420



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 68/278 (24%), Positives = 118/278 (42%), Gaps = 44/278 (15%)

Query: 65  LPIKDTASWNTMISGFVQKKNMAKARDLFLAM--PEKNSVSWSAMISGYIECGQLDKAVE 122
           LP+ DT   N++I+ + +  +   A  +F +M   +++ VS+S++IS +       KAVE
Sbjct: 83  LPL-DTLLLNSLITLYSKSNDPITAFSIFQSMENSKRDVVSYSSIISCFANNRNCLKAVE 141

Query: 123 LFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGC 182
           +F                                    ++++  G+ PN    ++V+  C
Sbjct: 142 MFD-----------------------------------QLLLQDGVYPNEYCFTAVIRAC 166

Query: 183 SHLSSLQLGKQVHQLVFKSPLCKDTTAL-TPLISMY---CKCGDLEDACKLFLEIQRKDV 238
                 + G  +   V K+        +   LI M+   C   DLE A K+F +++ K+V
Sbjct: 167 LKGGFFKTGLCLFGFVLKTGYFDSHVCVGCELIDMFVKGCSLADLESARKVFDKMREKNV 226

Query: 239 VTWNAMISGYAQHGKGEKALRLFDKM-KDEGMKPDSITFVALLLACNHAGLVDLGIQYFD 297
           VTW  MI+  AQ+G  ++A+ LF +M    G  PD  T   L+  C     + LG +   
Sbjct: 227 VTWTLMITRLAQYGYNDEAIDLFLEMLVSSGYVPDRFTLTGLISVCAEIQFLSLGKE-LH 285

Query: 298 SMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335
           S V   G+         +VD+  + G + EA  +   M
Sbjct: 286 SWVIRSGLVLDLCVGCSLVDMYAKCGLVQEARKVFDGM 323



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 45/138 (32%), Positives = 72/138 (52%), Gaps = 13/138 (9%)

Query: 176 SSVLL-GCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF--LE 232
           SS+LL  C    +  LGK +H  +  S L  DT  L  LI++Y K  D   A  +F  +E
Sbjct: 55  SSLLLKQCIRTKNTHLGKLLHHKLTTSNLPLDTLLLNSLITLYSKSNDPITAFSIFQSME 114

Query: 233 IQRKDVVTWNAMISGYAQHGKGEKALRLFDK-MKDEGMKPDSITFVALLLACNHAGLVDL 291
             ++DVV+++++IS +A +    KA+ +FD+ +  +G+ P+   F A++ AC   G    
Sbjct: 115 NSKRDVVSYSSIISCFANNRNCLKAVEMFDQLLLQDGVYPNEYCFTAVIRACLKGGFFKT 174

Query: 292 GI---------QYFDSMV 300
           G+          YFDS V
Sbjct: 175 GLCLFGFVLKTGYFDSHV 192



 Score = 45.1 bits (105), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 51/212 (24%), Positives = 95/212 (44%), Gaps = 14/212 (6%)

Query: 69  DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELF---- 124
           D +  N +IS + +  N   A  +F  M + N ++W+++I+G+ + G   KA+ELF    
Sbjct: 501 DLSVNNALISMYSKCGNKEAALQVFNDMEDCNVITWTSIINGFAKHGFASKALELFYNML 560

Query: 125 KVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSV--LLGC 182
           +     + V + A++S     G ++ +W         M    GI P     + +  LLG 
Sbjct: 561 ETGVKPNDVTYIAVLSACSHVGLIDEAWKH----FTSMRDNHGIVPRMEHYACMVDLLGR 616

Query: 183 SHLSSLQLGKQVHQLVFKS-PLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTW 241
           S L S  + + ++ + F +  L   T   +  +    K G  E A K+ LE +  D  T+
Sbjct: 617 SGLLSEAI-EFINSMPFDADALVWRTFLGSCRVHRNTKLG--EHAAKMILEREPHDPATY 673

Query: 242 NAMISGYAQHGKGEKALRLFDKMKDEGMKPDS 273
             + + YA  G+ E    +   MK + +  ++
Sbjct: 674 ILLSNLYATEGRWEDVAAIRKNMKQKQITKEA 705


>gi|12039323|gb|AAG46111.1|AC073166_9 hypothetical protein [Oryza sativa Japonica Group]
          Length = 787

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 211/527 (40%), Positives = 297/527 (56%), Gaps = 46/527 (8%)

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK------------------ 99
           A   F R+P +D  +W+TM++GFV       A  ++  M E                   
Sbjct: 162 AVKVFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDGVKGDEVVMIGVIQACTA 221

Query: 100 ---------------------NSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAM 138
                                + V+ ++++  Y + G LD A  +F +   ++ V+W+AM
Sbjct: 222 ARNVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSWSAM 281

Query: 139 ISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLV 198
           ISG+      +N  +++ L+L R M   GI+P++ +L S LL CS++  L+LG+ VH  +
Sbjct: 282 ISGF-----AQNGQSDEALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGRSVHGFI 336

Query: 199 FKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKAL 258
            +     +    T  I MY KCG L  A  LF  I  +D++ WNAMI+    HG+G+ AL
Sbjct: 337 VRR-FDFNCILGTAAIDMYSKCGSLASAQMLFNMISDRDLILWNAMIACCGAHGRGQDAL 395

Query: 259 RLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDL 318
            LF +M + GM+PD  TF +LL A +H+GLV+ G  +F  MVN + I     HY C+VDL
Sbjct: 396 TLFQEMNETGMRPDHATFASLLSALSHSGLVEEGKLWFGRMVNHFKITPAEKHYVCLVDL 455

Query: 319 LGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGC 378
           L R+G + EA DL+  M  +P  AI+  LLS C  +K+L+L E  A N+  L P +  G 
Sbjct: 456 LARSGLVEEASDLLTSMKAEPTVAIWVALLSGCLNNKKLELGESIADNILELQPDDV-GV 514

Query: 379 YVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSI 438
              ++N+YAA KKWD V ++R  MK++   KMPG S IE+    H F   D+ HP+   I
Sbjct: 515 LALVSNLYAATKKWDKVRQVRKLMKDSGSKKMPGCSSIEIRGTRHVFVMEDQSHPQREEI 574

Query: 439 HEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRV 498
             K+ +L+  M+  GY+P  EF  H + EEVKEQ L +HSE+LAIAFGL+    GT + +
Sbjct: 575 VSKVAKLDLEMRKMGYIPRTEFVYHDLEEEVKEQQLSYHSERLAIAFGLLNTGPGTRLVI 634

Query: 499 FKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
            KNLRVCGDCH A KYIS I  REI+VRD  RFHHFKDG CSC DYW
Sbjct: 635 IKNLRVCGDCHDAIKYISKIADREIVVRDAKRFHHFKDGVCSCRDYW 681



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 85/157 (54%), Gaps = 1/157 (0%)

Query: 169 RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK 228
           RP++++ +  L  C+ L  L+ G+ V    F +    D    + L+ +Y + G + DA K
Sbjct: 105 RPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDDVFVCSSLLHLYARWGAMGDAVK 164

Query: 229 LFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGL 288
           +F+ + R+D VTW+ M++G+   G+   A++++ +M+++G+K D +  + ++ AC  A  
Sbjct: 165 VFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDGVKGDEVVMIGVIQACTAARN 224

Query: 289 VDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKL 325
           V +G      ++  +G+       T +VD+  + G L
Sbjct: 225 VRMGASVHGHLLR-HGMRMDVVTATSLVDMYAKNGLL 260


>gi|147845321|emb|CAN83351.1| hypothetical protein VITISV_028907 [Vitis vinifera]
          Length = 948

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 200/542 (36%), Positives = 320/542 (59%), Gaps = 12/542 (2%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNS--DDVVAAFDFFQRLPI 67
           +++L     + G L  +QE+F  +   D VS+N M++  + N   D+ +  F   +    
Sbjct: 413 SNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLFKMMKTDVK 472

Query: 68  KDTASWNTMISGFVQKKNMAKARDLFLAMPE----KNSVSWSAMISGYIECGQLDKAVEL 123
            D+ ++  ++S   Q  ++   ++L   + +     N V  + ++  Y +CG++  ++++
Sbjct: 473 PDSVTYVMLLSMSTQLGDLXLGKELHCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKV 532

Query: 124 FKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCS 183
           F+    + ++ W  +I+       V +     GL+++  M   G+ P+ +++ S+L  CS
Sbjct: 533 FENMKARDIITWNTIIASC-----VHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCS 587

Query: 184 HLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNA 243
            L++ + GK++H  +FK  L  D      LI MY KCG L ++ ++F  ++ KDVVTW A
Sbjct: 588 LLAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTA 647

Query: 244 MISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDY 303
           +IS    +G+G+KA+R F +M+  G+ PD + FVA++ AC+H+GLV+ G+ YF  M  DY
Sbjct: 648 LISACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDY 707

Query: 304 GIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFA 363
            I  + +HY C+VDLL R+  L +A D I  MP KP  +I+G LLSACR+    ++A+  
Sbjct: 708 KIEPRIEHYACVVDLLSRSALLDKAEDFILSMPLKPDSSIWGALLSACRMSGDTEIAQRV 767

Query: 364 AMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVH 423
           +  +  LNP +  G YV ++N+YAA+ KWD V  IR S+K   + K PG SW+E+   V+
Sbjct: 768 SERIIELNP-DDTGYYVLVSNVYAALGKWDQVRSIRKSIKARGLKKDPGCSWMEIQNKVY 826

Query: 424 EFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAI 483
            F +G +   +   +++ L  L   M   GY+ +L+F LH + E+ K  +L  HSE+LAI
Sbjct: 827 VFGTGTKFSEQFEEVNKLLGMLAGLMAKEGYIANLQFVLHDIDEDEKRDILCGHSERLAI 886

Query: 484 AFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGD 543
           AFGL+    GTP++V KNLRVC DCH  TKYIS I +RE++VRD  RFH FKDG CSCGD
Sbjct: 887 AFGLLNTKPGTPLQVMKNLRVCEDCHTVTKYISKIXQRELLVRDANRFHVFKDGACSCGD 946

Query: 544 YW 545
           YW
Sbjct: 947 YW 948



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 90/312 (28%), Positives = 163/312 (52%), Gaps = 14/312 (4%)

Query: 34  PQPDVVSYNIMLSCILLNS--DDVVAAFDFFQRLPIK-DTASWNTMI---SGFVQKKNMA 87
           P  +V  +N ++  +  N    + ++ +   QR+ ++ DT ++ ++I   +G +  +   
Sbjct: 135 PSNNVYXWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAK 194

Query: 88  KARDLFLAMPEKNSVS-WSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFG 146
              D  L M   + +   +A+I  Y     LDKA ++F+  P++ VV+W ++ISGY   G
Sbjct: 195 SIHDRVLXMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANG 254

Query: 147 YVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKD 206
           Y    W E  L++      LG+ P++ ++SSVL  C  L S++ G  +H L+ K  + KD
Sbjct: 255 Y----WNE-ALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKD 309

Query: 207 TTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKD 266
                 L+SMYCK   L D  ++F ++  +D V+WN MI GY+Q G  E++++LF +M +
Sbjct: 310 VIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMVN 369

Query: 267 EGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLV 326
           +  KPD +T  ++L AC H G ++ G    D M+   G          ++++  + G L+
Sbjct: 370 Q-FKPDLLTITSILQACGHLGDLEFGKYVHDYMITS-GYECDTTASNILINMYAKCGNLL 427

Query: 327 EAVDLIKKMPFK 338
            + ++   M  K
Sbjct: 428 ASQEVFSGMKCK 439



 Score =  128 bits (321), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 94/341 (27%), Positives = 165/341 (48%), Gaps = 49/341 (14%)

Query: 53  DDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFL------AMPEK------- 99
           +D+  A   F+ +P++D  SWN++ISG+       +A +++        +P+        
Sbjct: 223 NDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYRFRNLGVVPDSYTMSSVL 282

Query: 100 ------NSVSWSAMISGYIECGQLDKAV--------------------ELFKVAPVKSVV 133
                  SV    +I G IE   + K V                     +F    ++  V
Sbjct: 283 RACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAV 342

Query: 134 AWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ 193
           +W  MI GY + G  E S     +KL   M+    +P+  +++S+L  C HL  L+ GK 
Sbjct: 343 SWNTMICGYSQVGLYEES-----IKLFMEMVN-QFKPDLLTITSILQACGHLGDLEFGKY 396

Query: 194 VHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGK 253
           VH  +  S    DTTA   LI+MY KCG+L  + ++F  ++ KD V+WN+MI+ Y Q+G 
Sbjct: 397 VHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGS 456

Query: 254 GEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYT 313
            ++A++LF  MK + +KPDS+T+V LL      G + LG +    +    G  +      
Sbjct: 457 FDEAMKLFKMMKTD-VKPDSVTYVMLLSMSTQLGDLXLGKELHCDLAK-MGFNSNIVVSN 514

Query: 314 CMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVH 354
            +VD+  + G++ +++ + + M  +     + T++++C VH
Sbjct: 515 TLVDMYAKCGEMGDSLKVFENMKAR-DIITWNTIIASC-VH 553



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 60/209 (28%), Positives = 104/209 (49%), Gaps = 7/209 (3%)

Query: 86  MAKARDLFLAMPEKNSVSWSA-MISGYIECGQLDKAVELFKVA-PVKSVVAWTAMISGYM 143
           + K   L + +   +SV +SA +I+ Y        +  +F++A P  +V  W ++I    
Sbjct: 91  LHKLHSLIITLGLHHSVIFSAKLIAKYAHFRDPTSSFSVFRLASPSNNVYXWNSIIRAL- 149

Query: 144 KFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPL 203
                 N    + L L      + ++P+  +  SV+  C+ L   ++ K +H  V     
Sbjct: 150 ----THNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKSIHDRVLXMGF 205

Query: 204 CKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDK 263
             D      LI MYC+  DL+ A K+F E+  +DVV+WN++ISGY  +G   +AL ++ +
Sbjct: 206 GSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYR 265

Query: 264 MKDEGMKPDSITFVALLLACNHAGLVDLG 292
            ++ G+ PDS T  ++L AC   G V+ G
Sbjct: 266 FRNLGVVPDSYTMSSVLRACGGLGSVEEG 294


>gi|115434844|ref|NP_001042180.1| Os01g0176300 [Oryza sativa Japonica Group]
 gi|11034538|dbj|BAB17062.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|113531711|dbj|BAF04094.1| Os01g0176300 [Oryza sativa Japonica Group]
 gi|125569234|gb|EAZ10749.1| hypothetical protein OsJ_00586 [Oryza sativa Japonica Group]
          Length = 665

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 198/472 (41%), Positives = 286/472 (60%), Gaps = 6/472 (1%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVV 133
           N ++  + +  +M  A  LF  M  ++  SW+++ISG +  GQ+D+A +LF   P +  +
Sbjct: 200 NALVDMYAECGDMDAAWVLFEGMQMRSMASWTSVISGLVRSGQVDRARDLFDHMPERDTI 259

Query: 134 AWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ 193
           AWTAMI GY++ G        D L+  R M    +R +  ++ SV+  C+ L +L+ G+ 
Sbjct: 260 AWTAMIDGYVQVGRFR-----DALETFRYMQICKVRADEFTMVSVVTACAQLGALETGEW 314

Query: 194 VHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGK 253
               + +  +  D      LI MY KCG +E A  +F ++  +D  TW A+I G A +G+
Sbjct: 315 ARIYMGRLGIKMDVFVGNALIDMYSKCGSIERALDVFKDMHNRDKFTWTAIILGLAVNGR 374

Query: 254 GEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYT 313
           GE+A+ +F +M      PD +TFV +L AC HAGLVD G ++F SM   Y I+    HY 
Sbjct: 375 GEEAIDMFYRMLRALQTPDEVTFVGVLTACTHAGLVDKGREFFLSMTEAYNISPTVVHYG 434

Query: 314 CMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPA 373
           C++D+LGRAGKL EA+D I KMP KP   I+GTLL++CRV+   ++ E AA  L  L+P 
Sbjct: 435 CLIDVLGRAGKLKEALDTIDKMPMKPNSTIWGTLLASCRVYGNSEIGELAAERLLELDPD 494

Query: 374 NAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHP 433
           N+   Y+ L+N+YA   +W DV RIR  + E  + K PG S IE+  ++HEF + DR HP
Sbjct: 495 NSTA-YILLSNMYAKSNRWKDVRRIRQIIMEKGIKKEPGCSMIEMNGIIHEFVAADRSHP 553

Query: 434 ELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLG 493
               I+ KL+ +   ++ AGYVPD+   L  V EE K+++L +HSEKLA+ F L+     
Sbjct: 554 MNKEIYSKLENVLTDLRNAGYVPDVTEVLVEVTEEEKQKVLYWHSEKLAVTFALLTSESN 613

Query: 494 TPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
             IR+ KNLR+C DCH A K IS +  RE+IVRD TRFHHF+ G+CSC DYW
Sbjct: 614 VIIRIVKNLRMCLDCHNAIKLISKLYGREVIVRDRTRFHHFRHGSCSCKDYW 665



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 62/234 (26%), Positives = 96/234 (41%), Gaps = 37/234 (15%)

Query: 133 VAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGK 192
           V W A+ISG+ + G  E S           M+       A +  SVL  C     L LG 
Sbjct: 127 VMWNALISGHNRSGRFELSCCS-----FVDMVRASAMATAVTYVSVLSACGKGKDLLLGM 181

Query: 193 QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ------------------ 234
           QVH+ V +S +  D      L+ MY +CGD++ A  LF  +Q                  
Sbjct: 182 QVHKRVLESGVLPDQRVENALVDMYAECGDMDAAWVLFEGMQMRSMASWTSVISGLVRSG 241

Query: 235 -------------RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLL 281
                         +D + W AMI GY Q G+   AL  F  M+   ++ D  T V+++ 
Sbjct: 242 QVDRARDLFDHMPERDTIAWTAMIDGYVQVGRFRDALETFRYMQICKVRADEFTMVSVVT 301

Query: 282 ACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335
           AC   G ++ G ++    +   GI         ++D+  + G +  A+D+ K M
Sbjct: 302 ACAQLGALETG-EWARIYMGRLGIKMDVFVGNALIDMYSKCGSIERALDVFKDM 354



 Score = 41.6 bits (96), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 64/287 (22%), Positives = 121/287 (42%), Gaps = 24/287 (8%)

Query: 117 LDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLS 176
           L +A  L    P +   A ++ +SG+          AE+ +     M+  G RP+A +  
Sbjct: 5   LSRARSLLDGIPHRRGRAASSSVSGH---------GAEEAVAGYVRMLAGGARPDAYTFP 55

Query: 177 SVL-----LGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF- 230
           S+L        + +++  +G  +H  V K  +  +  A + LI MY   GD   A  +  
Sbjct: 56  SLLKAAAAARGAAVAAASVGGAIHAHVVKFGMESNAHAASSLIVMYAARGDGAAARAVLE 115

Query: 231 ---LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG 287
              L       V WNA+ISG+ + G+ E +   F  M        ++T+V++L AC    
Sbjct: 116 AACLATGGGAPVMWNALISGHNRSGRFELSCCSFVDMVRASAMATAVTYVSVLSACGKGK 175

Query: 288 LVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTL 347
            + LG+Q    ++ + G+         +VD+    G +  A  L + M  +   A + ++
Sbjct: 176 DLLLGMQVHKRVL-ESGVLPDQRVENALVDMYAECGDMDAAWVLFEGMQMRSM-ASWTSV 233

Query: 348 LSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDD 394
           +S      ++D A     +LF+  P      +  + + Y  + ++ D
Sbjct: 234 ISGLVRSGQVDRAR----DLFDHMPERDTIAWTAMIDGYVQVGRFRD 276


>gi|359481906|ref|XP_003632690.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
           mitochondrial-like [Vitis vinifera]
          Length = 635

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 193/463 (41%), Positives = 296/463 (63%), Gaps = 11/463 (2%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  +  V+WN+V++  A Q G++++A+ LFD++P+ DV+S+  M++ +  N   +  A  
Sbjct: 172 MPERNVVSWNTVMSMLA-QCGRIEEARRLFDRMPERDVISWTAMIAGLSKNGR-IDEARL 229

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
            F R+P ++  SWN MI+G+ Q   + +A DLF  MPE++  SW+ MI+G I+ G L +A
Sbjct: 230 LFDRMPERNVVSWNAMITGYAQNLRLDEALDLFERMPERDLPSWNTMITGLIQNGDLRRA 289

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLL-RMMIGLGIRPNASSLSSVL 179
            +LF   P K+V++WT MI+G ++ G      +E+ LK+  RM+   G +PN  +  SVL
Sbjct: 290 RKLFNEMPKKNVISWTTMITGCVQEGE-----SEEALKIFSRMLSTNGAKPNQGTFVSVL 344

Query: 180 LGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLE--IQRKD 237
             CS+L+ L  G+QVHQ++ K+     T  ++ LI+MY KCG+L  A K+F +    ++D
Sbjct: 345 GACSNLAGLGEGQQVHQIISKTVYQDSTFVVSALINMYSKCGELGTARKMFDDGMTSQRD 404

Query: 238 VVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFD 297
           +V+WN +I+ YA HG G++A+  F +M+  G KPD +T+V LL AC+HAGLV+ G++YFD
Sbjct: 405 LVSWNGIIAAYAHHGYGKEAINFFKEMRKSGFKPDDVTYVGLLSACSHAGLVEEGLKYFD 464

Query: 298 SMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRL 357
            +V D  I  + DHY C+VDL GRAG+L EA   I+++  KP   ++G LL+ C VH  +
Sbjct: 465 ELVKDRSILVREDHYACLVDLCGRAGRLKEAFGFIERLETKPSARVWGALLAGCNVHANV 524

Query: 358 DLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIE 417
            + + AA  L  + P N AG Y+ L+NIYA+  KW + AR+RL MK+  + K PG SWIE
Sbjct: 525 KIGKQAAKKLLEVEPEN-AGTYLLLSNIYASTGKWREAARVRLKMKDKGLKKQPGCSWIE 583

Query: 418 VGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEF 460
           VG  VH F  GD+ H +   I+  L++L  +MK AGY P+ +F
Sbjct: 584 VGNRVHVFVVGDKSHSQSKLIYSLLRDLHSKMKKAGYEPNNDF 626



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 118/388 (30%), Positives = 200/388 (51%), Gaps = 52/388 (13%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKI-PQPDVVSYNIMLSCILLNSDDVVAAF 59
           M     + W +V++G+ K  G +++A+ LFD++  + +VV++  M+    + S+ +  A 
Sbjct: 78  MREPDVITWTTVISGYIKC-GMIEEARRLFDRVDAKKNVVTWTAMVGG-YIRSNKISDAE 135

Query: 60  DFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDK 119
             F  +P K+  SWNTMI G+ Q   +  A  LF  MPE+N VSW+ ++S   +CG++++
Sbjct: 136 KLFNEMPNKNVVSWNTMIDGYAQNGRIDSAMYLFEKMPERNVVSWNTVMSMLAQCGRIEE 195

Query: 120 AVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVL 179
           A  LF   P + V++WTAMI+G  K G ++ +         R++       N  S ++++
Sbjct: 196 ARRLFDRMPERDVISWTAMIAGLSKNGRIDEA---------RLLFDRMPERNVVSWNAMI 246

Query: 180 LGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVV 239
            G  +  +L+L + +   +F+    +D  +   +I+   + GDL  A KLF E+ +K+V+
Sbjct: 247 TG--YAQNLRLDEALD--LFERMPERDLPSWNTMITGLIQNGDLRRARKLFNEMPKKNVI 302

Query: 240 TWNAMISGYAQHGKGEKALRLFDKM-KDEGMKPDSITFVALLLACNHAGLVDLGIQ---- 294
           +W  MI+G  Q G+ E+AL++F +M    G KP+  TFV++L AC++   +  G Q    
Sbjct: 303 SWTTMITGCVQEGESEEALKIFSRMLSTNGAKPNQGTFVSVLGACSNLAGLGEGQQVHQI 362

Query: 295 -----YFDS------MVNDY------GIAAK--PDHYTCMVDLLGRAGKLV--------- 326
                Y DS      ++N Y      G A K   D  T   DL+   G +          
Sbjct: 363 ISKTVYQDSTFVVSALINMYSKCGELGTARKMFDDGMTSQRDLVSWNGIIAAYAHHGYGK 422

Query: 327 EAVDLIKKM---PFKPQPAIFGTLLSAC 351
           EA++  K+M    FKP    +  LLSAC
Sbjct: 423 EAINFFKEMRKSGFKPDDVTYVGLLSAC 450



 Score =  111 bits (278), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 76/288 (26%), Positives = 147/288 (51%), Gaps = 32/288 (11%)

Query: 69  DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELF-KVA 127
           + A  N MI+   +   + +AR LF  M E + ++W+ +ISGYI+CG +++A  LF +V 
Sbjct: 51  NVARCNWMITNLSKDGRIMEARRLFDEMREPDVITWTTVISGYIKCGMIEEARRLFDRVD 110

Query: 128 PVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSS 187
             K+VV WTAM+ GY++   +      D  KL   M      PN + +S   +   +  +
Sbjct: 111 AKKNVVTWTAMVGGYIRSNKI-----SDAEKLFNEM------PNKNVVSWNTMIDGYAQN 159

Query: 188 LQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISG 247
            ++   ++  +F+    ++  +   ++SM  +CG +E+A +LF  +  +DV++W AMI+G
Sbjct: 160 GRIDSAMY--LFEKMPERNVVSWNTVMSMLAQCGRIEEARRLFDRMPERDVISWTAMIAG 217

Query: 248 YAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAA 307
            +++G+ ++A  LFD+M +  +    +++ A++        +D  +  F+ M        
Sbjct: 218 LSKNGRIDEARLLFDRMPERNV----VSWNAMITGYAQNLRLDEALDLFERM-------- 265

Query: 308 KPDH----YTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSAC 351
            P+     +  M+  L + G L  A  L  +MP K     + T+++ C
Sbjct: 266 -PERDLPSWNTMITGLIQNGDLRRARKLFNEMP-KKNVISWTTMITGC 311


>gi|356496086|ref|XP_003516901.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Glycine max]
          Length = 605

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 212/533 (39%), Positives = 310/533 (58%), Gaps = 14/533 (2%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAF----DFFQRLPIKDTASWNTM 76
           G ++ A  +F +I +P    YN M+   + NS D+  A     +  +R    D  ++  +
Sbjct: 79  GSMEYACSIFRQIEEPGSFEYNTMIRGNV-NSMDLEEALLLYVEMLERGIEPDNFTYPFV 137

Query: 77  ISG----FVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSV 132
           +         K+ +     +F A  E +    + +IS Y +CG ++ A  +F+    KSV
Sbjct: 138 LKACSLLVALKEGVQIHAHVFNAGLEVDVFVQNGLISMYGKCGAIEHAGVVFEQMDEKSV 197

Query: 133 VAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGK 192
            +W+++I  +         W E  + L  M      R   S L S L  C+HL S  LG+
Sbjct: 198 ASWSSIIGAHASV----EMWHECLMLLGDMSREGRHRAEESILVSALSACTHLGSPNLGR 253

Query: 193 QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHG 252
            +H ++ ++    +    T LI MY KCG LE    +F  +  K+  ++  MI+G A HG
Sbjct: 254 CIHGILLRNISELNVVVKTSLIDMYVKCGSLEKGLCVFQNMAHKNRYSYTVMIAGLAIHG 313

Query: 253 KGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY 312
           +G +ALR+F  M +EG+ PD + +V +L AC+HAGLV  G Q F+ M  ++ I     HY
Sbjct: 314 RGREALRVFSDMLEEGLTPDDVVYVGVLSACSHAGLVKEGFQCFNRMQFEHMIKPTIQHY 373

Query: 313 TCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNP 372
            CMVDL+GRAG L EA DLIK MP KP   ++ +LLSAC+VH  L++ E AA N+F LN 
Sbjct: 374 GCMVDLMGRAGMLKEAYDLIKSMPIKPNDVVWRSLLSACKVHHNLEIGEIAADNIFKLNK 433

Query: 373 ANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVH 432
            N  G Y+ LAN+YA  +KW +VARIR  M E N+V+ PG+S +E    V++F S D+  
Sbjct: 434 HNP-GDYLVLANMYARAQKWANVARIRTEMVEKNLVQTPGFSLVEANRNVYKFVSQDKSQ 492

Query: 433 PELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPL 492
           P+  +I++ ++++E ++K  GY PD+   L  V E+ K Q L  HS+KLAIAF LI+   
Sbjct: 493 PQCETIYDMIQQMEWQLKFEGYTPDMSQVLLDVDEDEKRQRLKHHSQKLAIAFALIQTSE 552

Query: 493 GTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           G+P+R+ +NLR+C DCH  TK+IS I +REI VRD+ RFHHFKDGTCSC DYW
Sbjct: 553 GSPVRISRNLRMCNDCHTYTKFISVIYEREITVRDSNRFHHFKDGTCSCKDYW 605


>gi|125554650|gb|EAZ00256.1| hypothetical protein OsI_22267 [Oryza sativa Indica Group]
          Length = 602

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 194/444 (43%), Positives = 274/444 (61%), Gaps = 6/444 (1%)

Query: 102 VSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLR 161
           VSW+ M+ G    G +D A E+F   P +++V+W +MISGY+K          D L++  
Sbjct: 165 VSWTTMVGGLCRLGLVDDAREVFDAMPARNLVSWNSMISGYVKADRFL-----DALEVFD 219

Query: 162 MMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCG 221
            M  LG+  N    +S L+ C+   +L  G+++++ V +S +  D    T ++ MYCKCG
Sbjct: 220 EMRALGVEGNGFVATSALVACTGAGALGRGREIYRWVEQSGIEVDAKLATAVVDMYCKCG 279

Query: 222 DLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLL 281
            +++A ++F  +  + + TWN MI G+A HG+ + AL LF +M+  G+ PD +T + +L 
Sbjct: 280 CVDEAWRVFDSLPARGLTTWNCMIGGFAVHGRCDDALELFHQMEAAGVAPDDVTLLNVLT 339

Query: 282 ACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQP 341
           AC HAG V  G +Y + +V+ +GI  K +HY CMVDL GRAG+L EA  +I +MP  P  
Sbjct: 340 ACAHAGEVSEGRRYLNHIVSRHGIEPKGEHYGCMVDLFGRAGQLDEAKKVIDEMPMDPDL 399

Query: 342 AIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLS 401
           A+ G LL AC++H  +DL E     + +L+P N +G YV LAN+ A   +WD+V ++R  
Sbjct: 400 AVLGALLGACKIHGDVDLGEAIGWRVIDLDPDN-SGRYVLLANLLAGAGRWDEVGKVRRL 458

Query: 402 MKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFA 461
           M E NV K  G S IEV     EFR G+  HP+   I+    ++  R++  GYVPD   A
Sbjct: 459 MDERNVSKEAGRSVIEVDGEACEFRCGNLRHPQAREIYAMAVDMVSRIRAEGYVPDTGEA 518

Query: 462 LHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKR 521
           LH V EE KE  LL HSEKLAIAFGL++      +R+ KNLRVC DCH ATKY+S +  R
Sbjct: 519 LHDVAEEDKEAALLCHSEKLAIAFGLLRARPRETLRITKNLRVCRDCHEATKYVSRVFGR 578

Query: 522 EIIVRDTTRFHHFKDGTCSCGDYW 545
           EI+VRD +RFHHFKDG CSC DYW
Sbjct: 579 EIVVRDRSRFHHFKDGMCSCKDYW 602



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 78/331 (23%), Positives = 144/331 (43%), Gaps = 54/331 (16%)

Query: 7   VNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSD--DVVAAFDFFQR 64
           V+W +++ G  +  G + DA+E+FD +P  ++VS+N M+S  +      D +  FD  + 
Sbjct: 165 VSWTTMVGGLCRL-GLVDDAREVFDAMPARNLVSWNSMISGYVKADRFLDALEVFDEMRA 223

Query: 65  LPIKDTASWNT-MISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMISGYIECGQLDK 119
           L ++      T  +        + + R+++  +     E ++   +A++  Y +CG +D+
Sbjct: 224 LGVEGNGFVATSALVACTGAGALGRGREIYRWVEQSGIEVDAKLATAVVDMYCKCGCVDE 283

Query: 120 AVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVL 179
           A  +F   P + +  W  MI G+   G       +D L+L   M   G+ P+  +L +VL
Sbjct: 284 AWRVFDSLPARGLTTWNCMIGGFAVHGRC-----DDALELFHQMEAAGVAPDDVTLLNVL 338

Query: 180 LGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVV 239
             C+H   +  G++                L  ++S +               I+ K   
Sbjct: 339 TACAHAGEVSEGRRY---------------LNHIVSRH--------------GIEPKG-E 368

Query: 240 TWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSM 299
            +  M+  + + G+ ++A ++ D+M    M PD     ALL AC   G VDLG       
Sbjct: 369 HYGCMVDLFGRAGQLDEAKKVIDEMP---MDPDLAVLGALLGACKIHGDVDLG-----EA 420

Query: 300 VNDYGIAAKPDH---YTCMVDLLGRAGKLVE 327
           +    I   PD+   Y  + +LL  AG+  E
Sbjct: 421 IGWRVIDLDPDNSGRYVLLANLLAGAGRWDE 451


>gi|110737061|dbj|BAF00484.1| hypothetical protein [Arabidopsis thaliana]
          Length = 629

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 198/455 (43%), Positives = 280/455 (61%), Gaps = 20/455 (4%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI 164
           + +I  Y  CG LD A ++F   P +S+V+W +MI   ++FG  +++     L+L R M 
Sbjct: 181 NGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRFGEYDSA-----LQLFREM- 234

Query: 165 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKS---PLCKDTTALTPLISMYCKCG 221
                P+  ++ SVL  C+ L SL LG   H  + +     +  D      LI MYCKCG
Sbjct: 235 QRSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCG 294

Query: 222 DLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKD--EGMKPDSITFVAL 279
            L  A ++F  +Q++D+ +WNAMI G+A HG+ E+A+  FD+M D  E ++P+S+TFV L
Sbjct: 295 SLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMVDKRENVRPNSVTFVGL 354

Query: 280 LLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKP 339
           L+ACNH G V+ G QYFD MV DY I    +HY C+VDL+ RAG + EA+D++  MP KP
Sbjct: 355 LIACNHRGFVNKGRQYFDMMVRDYCIEPALEHYGCIVDLIARAGYITEAIDMVMSMPMKP 414

Query: 340 QPAIFGTLLSAC-RVHKRLDLAEFAAMNLFNL------NPANAAGCYVQLANIYAAMKKW 392
              I+ +LL AC +    ++L+E  A N+         +  N +G YV L+ +YA+  +W
Sbjct: 415 DAVIWRSLLDACCKKGASVELSEEIARNIIGTKEDNESSNGNCSGAYVLLSRVYASASRW 474

Query: 393 DDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLA 452
           +DV  +R  M E+ + K PG S IE+  + HEF +GD  HP+   I+++LK ++ R++  
Sbjct: 475 NDVGIVRKLMSEHGIRKEPGCSSIEINGISHEFFAGDTSHPQTKQIYQQLKVIDDRLRSI 534

Query: 453 GYVPDLEFA--LHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHR 510
           GY+PD   A  + A  +  KE  L  HSE+LAIAFGLI +P  TPIR+FKNLRVC DCH 
Sbjct: 535 GYLPDRSQAPLVDATNDGSKEYSLRLHSERLAIAFGLINLPPQTPIRIFKNLRVCNDCHE 594

Query: 511 ATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
            TK IS +   EIIVRD  RFHHFKDG+CSC DYW
Sbjct: 595 VTKLISKVFNTEIIVRDRVRFHHFKDGSCSCLDYW 629



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 83/177 (46%), Gaps = 6/177 (3%)

Query: 117 LDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLG-IRPNASSL 175
           ++ A  +F      S   W  +I         + S  E+   L R M+  G   P+  + 
Sbjct: 90  VNYAFRVFDSIENHSSFMWNTLIRACAH----DVSRKEEAFMLYRKMLERGESSPDKHTF 145

Query: 176 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR 235
             VL  C+++     GKQVH  + K     D      LI +Y  CG L+ A K+F E+  
Sbjct: 146 PFVLKACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPE 205

Query: 236 KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 292
           + +V+WN+MI    + G+ + AL+LF +M+    +PD  T  ++L AC   G + LG
Sbjct: 206 RSLVSWNSMIDALVRFGEYDSALQLFREMQ-RSFEPDGYTMQSVLSACAGLGSLSLG 261



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/251 (21%), Positives = 114/251 (45%), Gaps = 30/251 (11%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILL--NSDDVVAAFDFFQRLPIKDTASWNTMIS 78
           G L  A+++FD++P+  +VS+N M+  ++     D  +  F   QR    D  +  +++S
Sbjct: 191 GCLDLARKVFDEMPERSLVSWNSMIDALVRFGEYDSALQLFREMQRSFEPDGYTMQSVLS 250

Query: 79  ----------GFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAP 128
                     G      + +  D+ +AM   + +  +++I  Y +CG L  A ++F+   
Sbjct: 251 ACAGLGSLSLGTWAHAFLLRKCDVDVAM---DVLVKNSLIEMYCKCGSLRMAEQVFQGMQ 307

Query: 129 VKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGL--GIRPNASSLSSVLLGCSHLS 186
            + + +W AMI G+   G      AE+ +     M+     +RPN+ +   +L+ C+H  
Sbjct: 308 KRDLASWNAMILGFATHGR-----AEEAMNFFDRMVDKRENVRPNSVTFVGLLIACNHRG 362

Query: 187 SLQLGKQVHQLVFK----SPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK-DVVTW 241
            +  G+Q   ++ +     P  +    +  LI+   + G + +A  + + +  K D V W
Sbjct: 363 FVNKGRQYFDMMVRDYCIEPALEHYGCIVDLIA---RAGYITEAIDMVMSMPMKPDAVIW 419

Query: 242 NAMISGYAQHG 252
            +++    + G
Sbjct: 420 RSLLDACCKKG 430


>gi|449437940|ref|XP_004136748.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g52630-like [Cucumis sativus]
          Length = 598

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 211/535 (39%), Positives = 324/535 (60%), Gaps = 34/535 (6%)

Query: 28  ELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRL------PIKDTASWNTMISGFV 81
           ++FD+ P+    +++ ++S    N   ++A   FF+R+      P        T   GF+
Sbjct: 81  QVFDETPKKSSTTWSSVISAFAQNEAPLLA-LQFFRRMLNDGVRPDDHIYPSATKACGFL 139

Query: 82  QKKNMAKAR-----------DLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVK 130
           ++ ++ K+            D+F+          S+++  Y +CG++  A  LF   P +
Sbjct: 140 RRSDVGKSVHCLAVKTGYYCDVFVG---------SSLVDMYAKCGEIGDARHLFDEMPER 190

Query: 131 SVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQL 190
           +VV+W+ MI     +GY +     + L L +  +   +  N  + SSV+  CS  + L+L
Sbjct: 191 NVVSWSGMI-----YGYAQLDDGVEALTLFKQALIEDVDVNDFTFSSVIRVCSSSTFLEL 245

Query: 191 GKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQ 250
           GK +H L  K      +   + LIS+Y KCG +E A ++F EI  +++  WN+M+   AQ
Sbjct: 246 GKLIHGLCLKMSFDSSSFVGSALISLYSKCGVIEGAYQVFDEIPTRNLGLWNSMLIACAQ 305

Query: 251 HGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPD 310
           H   ++   LF++M + GMKP+ I+F+++L AC+HAGLV+ G +YF S++ DYGI  + +
Sbjct: 306 HAHTQRVFGLFEEMGNVGMKPNFISFLSVLYACSHAGLVEKGREYF-SLMRDYGIEPETE 364

Query: 311 HYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNL 370
           HY  +VDLLGRAGKL EAV +IK+MP +P  +++G LL+ CR+HK  ++A F A  +  +
Sbjct: 365 HYASLVDLLGRAGKLQEAVSVIKQMPMRPTESVWGALLTGCRIHKDTEMAAFVADRILEM 424

Query: 371 NPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDR 430
           + ++++G +V L+N YAA  ++++ AR+R  +++  V K  G SW+E G  VH F +GDR
Sbjct: 425 D-SSSSGLHVLLSNAYAAAGRYEEAARMRKMLRDRGVKKETGLSWVEEGNKVHTFTAGDR 483

Query: 431 VHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKV 490
            H + V I+EKL+ELE+ M+ AGYV D  F L AV  E K + + +HSE+LAIAFGLI  
Sbjct: 484 SHAKWVEIYEKLEELEEEMEKAGYVADTSFVLRAVDGEEKNETIRYHSERLAIAFGLITF 543

Query: 491 PLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           P G PIRV KNLRVCGDCH A K++S    R +IVRD  RFH F+DG CSCGDYW
Sbjct: 544 PPGRPIRVMKNLRVCGDCHAAIKFMSKCCGRVLIVRDNNRFHRFEDGKCSCGDYW 598



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 62/254 (24%), Positives = 126/254 (49%), Gaps = 17/254 (6%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTA----SWNTM 76
           G++ DA+ LFD++P+ +VVS++ M+       DD V A   F++  I+D      +++++
Sbjct: 175 GEIGDARHLFDEMPERNVVSWSGMIYG-YAQLDDGVEALTLFKQALIEDVDVNDFTFSSV 233

Query: 77  I-----SGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKS 131
           I     S F++   +     L ++  + +S   SA+IS Y +CG ++ A ++F   P ++
Sbjct: 234 IRVCSSSTFLELGKLIHGLCLKMSF-DSSSFVGSALISLYSKCGVIEGAYQVFDEIPTRN 292

Query: 132 VVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLG 191
           +  W +M+    +  + +  +      L   M  +G++PN  S  SVL  CSH   ++ G
Sbjct: 293 LGLWNSMLIACAQHAHTQRVFG-----LFEEMGNVGMKPNFISFLSVLYACSHAGLVEKG 347

Query: 192 KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI-QRKDVVTWNAMISGYAQ 250
           ++   L+    +  +T     L+ +  + G L++A  +  ++  R     W A+++G   
Sbjct: 348 REYFSLMRDYGIEPETEHYASLVDLLGRAGKLQEAVSVIKQMPMRPTESVWGALLTGCRI 407

Query: 251 HGKGEKALRLFDKM 264
           H   E A  + D++
Sbjct: 408 HKDTEMAAFVADRI 421



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 82/172 (47%), Gaps = 13/172 (7%)

Query: 171 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 230
           N   + ++LL  +   SL+ G Q+H  + K  L         LI++Y K      + ++F
Sbjct: 24  NYRQICNLLLSFTRSRSLRQGLQLHAHILKFGLQTIPLVSHNLINLYSKTQLPLFSLQVF 83

Query: 231 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVD 290
            E  +K   TW+++IS +AQ+     AL+ F +M ++G++PD   + +   AC      D
Sbjct: 84  DETPKKSSTTWSSVISAFAQNEAPLLALQFFRRMLNDGVRPDDHIYPSATKACGFLRRSD 143

Query: 291 LGIQYFDSMVNDYGIAAKPDHY------TCMVDLLGRAGKLVEAVDLIKKMP 336
           +G          + +A K  +Y      + +VD+  + G++ +A  L  +MP
Sbjct: 144 VGKSV-------HCLAVKTGYYCDVFVGSSLVDMYAKCGEIGDARHLFDEMP 188


>gi|359476124|ref|XP_002282605.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
 gi|296082021|emb|CBI21026.3| unnamed protein product [Vitis vinifera]
          Length = 583

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 191/442 (43%), Positives = 272/442 (61%), Gaps = 7/442 (1%)

Query: 105 SAMISGYIEC-GQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMM 163
           + M+  Y  C G ++ A +LF   P    V WTAMI GY + G      +   + L R M
Sbjct: 148 NTMVHMYCCCSGGMEFARKLFDEMPKLDPVTWTAMIGGYARLGQ-----SAGAVGLFRKM 202

Query: 164 IGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDL 223
              G+ P+  ++ SVL  C+ L +L+LGK +   + K  + K       L+ M+ KCGD+
Sbjct: 203 QIAGVCPDDVTMVSVLSACTDLGALELGKWIESYIEKERVLKTVELSNALVDMFAKCGDV 262

Query: 224 EDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC 283
           + A  LF  + ++ +V+W ++I G A HG+G +A+ LF++MK  GM P+ I F+ LL AC
Sbjct: 263 DKALGLFRNMSKRTIVSWTSVIVGLAMHGRGLEAVSLFEEMKASGMVPEDIAFIGLLSAC 322

Query: 284 NHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAI 343
           +H+GLV+ G QYF  M   +GI  K +HY CMVDLL RAG + EA++ +++MP +P P I
Sbjct: 323 SHSGLVERGRQYFSEMTRQFGIVPKIEHYGCMVDLLSRAGLVTEALEFVERMPIEPNPII 382

Query: 344 FGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMK 403
           + TL+SACRVH  L L E  +  L    P + +  YV L+NIY  M  W+  ++IR++M 
Sbjct: 383 WRTLISACRVHGELKLGESISKQLIRNEPMHESN-YVLLSNIYGKMLDWEKKSKIRVAMG 441

Query: 404 ENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALH 463
           +  + K+PG + IE+   +HEF  GDR H +   I + + E+ + MK AGY P       
Sbjct: 442 KKGIQKVPGSTMIELDNEIHEFIVGDRSHNQYNEIIKMVNEMGREMKRAGYAPTTTEVFL 501

Query: 464 AVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREI 523
            + EE KE  L  HSEKLAIAF L+  P G+PIR+ KNLRVCGDCH A+K+IS I  REI
Sbjct: 502 DIDEEDKEDALSRHSEKLAIAFALLNTPPGSPIRITKNLRVCGDCHSASKFISKIYNREI 561

Query: 524 IVRDTTRFHHFKDGTCSCGDYW 545
           ++RD +RFHHF+DG CSCGD+W
Sbjct: 562 VMRDRSRFHHFRDGQCSCGDFW 583



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 69/212 (32%), Positives = 111/212 (52%), Gaps = 3/212 (1%)

Query: 126 VAPVKSVVAWTAMISGYMKFGYVENSWAE-DGLKLLRMMIGLGIRPNASSLSSVLLGCSH 184
           V  V+    + A +   +   Y E+S ++ + +    +M+G GI PN  +   VL  C+ 
Sbjct: 62  VFSVEDARVYDAFLFSTIIRAYAESSQSKHNAIFYYNLMLGYGISPNKYAFPFVLKACAG 121

Query: 185 LSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKC-GDLEDACKLFLEIQRKDVVTWNA 243
           L  L LGK VH  + K     D      ++ MYC C G +E A KLF E+ + D VTW A
Sbjct: 122 LRDLNLGKAVHGSLVKFGFDDDIFVQNTMVHMYCCCSGGMEFARKLFDEMPKLDPVTWTA 181

Query: 244 MISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDY 303
           MI GYA+ G+   A+ LF KM+  G+ PD +T V++L AC   G ++LG ++ +S +   
Sbjct: 182 MIGGYARLGQSAGAVGLFRKMQIAGVCPDDVTMVSVLSACTDLGALELG-KWIESYIEKE 240

Query: 304 GIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335
            +    +    +VD+  + G + +A+ L + M
Sbjct: 241 RVLKTVELSNALVDMFAKCGDVDKALGLFRNM 272



 Score = 42.4 bits (98), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 59/273 (21%), Positives = 116/273 (42%), Gaps = 45/273 (16%)

Query: 7   VNWNSVLAGFAKQRGKLKDAQELFDKIP-----QPDVVSYNIMLSCILLNSDDV---VAA 58
           V W +++ G+A+  G+   A  LF K+        DV   +++ +C  L + ++   + +
Sbjct: 177 VTWTAMIGGYARL-GQSAGAVGLFRKMQIAGVCPDDVTMVSVLSACTDLGALELGKWIES 235

Query: 59  FDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLD 118
           +   +R+ +K     N ++  F +  ++ KA  LF  M ++  VSW+++I G    G+  
Sbjct: 236 YIEKERV-LKTVELSNALVDMFAKCGDVDKALGLFRNMSKRTIVSWTSVIVGLAMHGRGL 294

Query: 119 KAVELFKVAPVKSVV----AWTAMISGYMKFGYVENS----------------------- 151
           +AV LF+      +V    A+  ++S     G VE                         
Sbjct: 295 EAVSLFEEMKASGMVPEDIAFIGLLSACSHSGLVERGRQYFSEMTRQFGIVPKIEHYGCM 354

Query: 152 ---WAEDGL--KLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVH-QLVFKSPLCK 205
               +  GL  + L  +  + I PN     +++  C     L+LG+ +  QL+   P+ +
Sbjct: 355 VDLLSRAGLVTEALEFVERMPIEPNPIIWRTLISACRVHGELKLGESISKQLIRNEPMHE 414

Query: 206 DTTALTPLISMYCKCGDLEDACKLFLEIQRKDV 238
               L  L ++Y K  D E   K+ + + +K +
Sbjct: 415 SNYVL--LSNIYGKMLDWEKKSKIRVAMGKKGI 445


>gi|356528388|ref|XP_003532785.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46460,
           mitochondrial-like [Glycine max]
          Length = 721

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 223/589 (37%), Positives = 320/589 (54%), Gaps = 54/589 (9%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIP--QPDVVSYNIMLSCILLNS--DDVV 56
           M  +T V+W +++ G  +  G +++A+ LF  +     DV ++N M+     N   DD  
Sbjct: 143 MPRRTVVSWTTLVDGLLRL-GIVQEAETLFWAMEPMDRDVAAWNAMIHGYCSNGRVDD-- 199

Query: 57  AAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSV-------------- 102
            A   F ++P +D  SW++MI+G        +A  LF  M                    
Sbjct: 200 -ALQLFCQMPSRDVISWSSMIAGLDHNGKSEQALVLFRDMVASGVCLSSGVLVCGLSAAA 258

Query: 103 ---SW-----------------------SAMISGYIECGQLDKAVELFKVAPVKSVVAWT 136
              +W                       +++++ Y  C Q++ A  +F     KSVV WT
Sbjct: 259 KIPAWRVGIQIHCSVFKLGDWHFDEFVSASLVTFYAGCKQMEAACRVFGEVVYKSVVIWT 318

Query: 137 AMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQ 196
           A+++GY       N    + L++   M+ + + PN SS +S L  C  L  ++ GK +H 
Sbjct: 319 ALLTGYGL-----NDKHREALEVFGEMMRIDVVPNESSFTSALNSCCGLEDIERGKVIHA 373

Query: 197 LVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEK 256
              K  L         L+ MY KCG + DA  +F  I  K+VV+WN++I G AQHG G  
Sbjct: 374 AAVKMGLESGGYVGGSLVVMYSKCGYVSDAVYVFKGINEKNVVSWNSVIVGCAQHGCGMW 433

Query: 257 ALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMV 316
           AL LF++M  EG+ PD IT   LL AC+H+G++     +F        +    +HYT MV
Sbjct: 434 ALALFNQMLREGVDPDGITVTGLLSACSHSGMLQKARCFFRYFGQKRSVTLTIEHYTSMV 493

Query: 317 DLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAA 376
           D+LGR G+L EA  ++  MP K    ++  LLSACR H  LDLA+ AA  +F + P + +
Sbjct: 494 DVLGRCGELEEAEAVVMSMPMKANSMVWLALLSACRKHSNLDLAKRAANQIFEIEP-DCS 552

Query: 377 GCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELV 436
             YV L+N+YA+  +W +VA IR  MK N VVK PG SW+ +    H+F S DR HP   
Sbjct: 553 AAYVLLSNLYASSSRWAEVALIRRKMKHNGVVKKPGSSWLTLKGQKHKFLSADRSHPLAE 612

Query: 437 SIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPI 496
            I++KL+ L  ++K  GYVPD +FALH V  E KE++L +HSE+LAIAFGL+    G+ I
Sbjct: 613 KIYQKLEWLGVKLKELGYVPDQQFALHDVETEQKEEMLSYHSERLAIAFGLLSTVEGSAI 672

Query: 497 RVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
            V KNLRVCGDCH A K ++ I  REI+VRD++RFH FK+G CSCGDYW
Sbjct: 673 TVMKNLRVCGDCHNAIKLMAKIVDREIVVRDSSRFHDFKNGICSCGDYW 721



 Score =  148 bits (373), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 89/277 (32%), Positives = 151/277 (54%), Gaps = 13/277 (4%)

Query: 19  QRGKLKDAQELFDKIPQPDVVSYN-IMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMI 77
           Q  +L++A +LF +IP  DVVS+N I+  C  L+  D+V A   F  +P +   SW T++
Sbjct: 98  QNHRLREAIDLFRRIPFKDVVSWNSIIKGC--LHCGDIVTARKLFDEMPRRTVVSWTTLV 155

Query: 78  SGFVQKKNMAKARDLFLAMP--EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAW 135
            G ++   + +A  LF AM   +++  +W+AMI GY   G++D A++LF   P + V++W
Sbjct: 156 DGLLRLGIVQEAETLFWAMEPMDRDVAAWNAMIHGYCSNGRVDDALQLFCQMPSRDVISW 215

Query: 136 TAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVH 195
           ++MI+G        N  +E  L L R M+  G+  ++  L   L   + + + ++G Q+H
Sbjct: 216 SSMIAGLD-----HNGKSEQALVLFRDMVASGVCLSSGVLVCGLSAAAKIPAWRVGIQIH 270

Query: 196 QLVFK-SPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKG 254
             VFK      D      L++ Y  C  +E AC++F E+  K VV W A+++GY  + K 
Sbjct: 271 CSVFKLGDWHFDEFVSASLVTFYAGCKQMEAACRVFGEVVYKSVVIWTALLTGYGLNDKH 330

Query: 255 EKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDL 291
            +AL +F +M    + P+  +F + L +C   GL D+
Sbjct: 331 REALEVFGEMMRIDVVPNESSFTSALNSC--CGLEDI 365



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 69/267 (25%), Positives = 117/267 (43%), Gaps = 61/267 (22%)

Query: 50  LNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMIS 109
           LN+  +  A   F ++P    + +  M+  + Q   + +A DLF  +P K+ VSW+++I 
Sbjct: 66  LNNRSLDEARAIFDQIPTPHVSLYTIMLHAYAQNHRLREAIDLFRRIPFKDVVSWNSIIK 125

Query: 110 GYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENS----WAEDGLKLLRMMIG 165
           G + CG +  A +LF   P ++VV+WT ++ G ++ G V+ +    WA +          
Sbjct: 126 GCLHCGDIVTARKLFDEMPRRTVVSWTTLVDGLLRLGIVQEAETLFWAME---------- 175

Query: 166 LGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLED 225
                                               P+ +D  A   +I  YC  G ++D
Sbjct: 176 ------------------------------------PMDRDVAAWNAMIHGYCSNGRVDD 199

Query: 226 ACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN- 284
           A +LF ++  +DV++W++MI+G   +GK E+AL LF  M   G+   S   V  L A   
Sbjct: 200 ALQLFCQMPSRDVISWSSMIAGLDHNGKSEQALVLFRDMVASGVCLSSGVLVCGLSAAAK 259

Query: 285 ----------HAGLVDLGIQYFDSMVN 301
                     H  +  LG  +FD  V+
Sbjct: 260 IPAWRVGIQIHCSVFKLGDWHFDEFVS 286


>gi|226493697|ref|NP_001147320.1| selenium-binding protein-like [Zea mays]
 gi|195609890|gb|ACG26775.1| selenium-binding protein-like [Zea mays]
          Length = 605

 Score =  387 bits (993), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 194/446 (43%), Positives = 275/446 (61%), Gaps = 8/446 (1%)

Query: 102 VSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLR 161
           VSW+ M+ G ++ G  D A  LF   P +++V+W AM+SGY+K          D L++  
Sbjct: 166 VSWTTMVGGLLKLGLFDDARVLFDGMPERNLVSWNAMMSGYVKACRFL-----DALEVFD 220

Query: 162 MMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCG 221
            M   G+  N    ++ ++ C+   +L  G++VH+ V +S +  D    T ++ MYCKCG
Sbjct: 221 EMRARGVDGNVFVAATAVVACTGAGALARGREVHRWVEQSGIQMDEKLATAVVDMYCKCG 280

Query: 222 DLEDACKLF--LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVAL 279
            +E+A ++F  L +  K + TWN MI G+A HG+G+ AL+LF +M+ EG+ PD +T V +
Sbjct: 281 CVEEAWRVFEALPLAAKGLTTWNCMIGGFAVHGRGQDALKLFGRMEREGVAPDDVTLVNV 340

Query: 280 LLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKP 339
           L AC HAG++  G  YF+ +   YGI  K +HY CMVDL GRAG+L EA  +I+ MP +P
Sbjct: 341 LTACAHAGMLSEGRHYFNYVPQRYGIEPKMEHYGCMVDLYGRAGRLEEAKKVIQDMPMEP 400

Query: 340 QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIR 399
              + G L  A ++H  +DL E     +  L+P N+ G YV LAN+ A   +W+DVAR+R
Sbjct: 401 DVGVLGALFGASKIHGDVDLGEAIGWRVIELDPQNS-GRYVLLANLLATAGRWEDVARVR 459

Query: 400 LSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLE 459
             M E NV K  G S IEV   V EF+ G   HP    ++    ++ ++++  GYVPD  
Sbjct: 460 RLMDERNVSKEAGRSVIEVQGEVCEFQCGGLCHPRAEEVYAMASDMMRKIRAEGYVPDTR 519

Query: 460 FALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIE 519
             LHA+ EE KE  LL+HSEKLAIAFGL+    G  +R+ KNLRVC DCH ATK++S + 
Sbjct: 520 DVLHAIAEEEKETPLLYHSEKLAIAFGLLHTRPGDTMRITKNLRVCRDCHEATKFVSRVF 579

Query: 520 KREIIVRDTTRFHHFKDGTCSCGDYW 545
           +R+I+VRD  RFHHFKDG CSC DYW
Sbjct: 580 ERQIVVRDRNRFHHFKDGQCSCKDYW 605



 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 65/263 (24%), Positives = 115/263 (43%), Gaps = 29/263 (11%)

Query: 7   VNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLS-----CILLNSDDVVAAFDF 61
           V+W +++ G  K  G   DA+ LFD +P+ ++VS+N M+S     C  L   D +  FD 
Sbjct: 166 VSWTTMVGGLLKL-GLFDDARVLFDGMPERNLVSWNAMMSGYVKACRFL---DALEVFDE 221

Query: 62  FQRLPIKDTASWNTMISGFVQKKN-MAKARDLF-------LAMPEKNSVSWSAMISGYIE 113
            +   +                   +A+ R++        + M EK +   +A++  Y +
Sbjct: 222 MRARGVDGNVFVAATAVVACTGAGALARGREVHRWVEQSGIQMDEKLA---TAVVDMYCK 278

Query: 114 CGQLDKAVELFKVAPV--KSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPN 171
           CG +++A  +F+  P+  K +  W  MI G+   G       +D LKL   M   G+ P+
Sbjct: 279 CGCVEEAWRVFEALPLAAKGLTTWNCMIGGFAVHGR-----GQDALKLFGRMEREGVAPD 333

Query: 172 ASSLSSVLLGCSHLSSLQLGKQVHQLV-FKSPLCKDTTALTPLISMYCKCGDLEDACKLF 230
             +L +VL  C+H   L  G+     V  +  +         ++ +Y + G LE+A K+ 
Sbjct: 334 DVTLVNVLTACAHAGMLSEGRHYFNYVPQRYGIEPKMEHYGCMVDLYGRAGRLEEAKKVI 393

Query: 231 LEI-QRKDVVTWNAMISGYAQHG 252
            ++    DV    A+      HG
Sbjct: 394 QDMPMEPDVGVLGALFGASKIHG 416


>gi|449453750|ref|XP_004144619.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Cucumis sativus]
 gi|449506934|ref|XP_004162888.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Cucumis sativus]
          Length = 1067

 Score =  387 bits (993), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 213/550 (38%), Positives = 334/550 (60%), Gaps = 25/550 (4%)

Query: 10   NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
            N++LA +  + G +K+ Q+ F  +   D VS+N ++  +  +   ++ A + F    +  
Sbjct: 529  NALLALYG-ECGYVKECQKAFSLMLDYDHVSWNSLIGALADSEPSMLEAVESFL---VMM 584

Query: 70   TASWN------TMISGFVQKKNMAKARDLFLAMPEKNSVSW-----SAMISGYIECGQLD 118
             A W+        I   V   ++ +      A+  K +V+      +A+++ Y +CG + 
Sbjct: 585  RAGWDPNRVTFITILAAVSSLSLHELGKQIHALVLKRNVAADTAIENALLACYGKCGDMG 644

Query: 119  KAVELF-KVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSS 177
                +F +++  +  V+W +MISGY     + N      + ++  M+  G R +  + ++
Sbjct: 645  YCENIFSRMSDRQDEVSWNSMISGY-----IHNELLPKAMDMVWFMMQKGQRLDGFTFAT 699

Query: 178  VLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKD 237
            VL  C+ +++L+ G +VH    ++ L  D    + L+ MY KCG ++ A + F  +  ++
Sbjct: 700  VLSACATVATLERGMEVHGCSVRACLESDIVIGSALVDMYAKCGRIDYASRFFEMMPARN 759

Query: 238  VVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFD 297
            + +WN+MISGYA+HG G K+L LF +MK +G  PD +TFV +L AC+HAGLV+ G  +FD
Sbjct: 760  LYSWNSMISGYARHGHGTKSLDLFAQMKLQGPLPDHVTFVGVLSACSHAGLVNEGFSHFD 819

Query: 298  SMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSA-CRVHKR 356
            SM   YG+A + +H++CMVDLLGR G+L +  D + +MP KP   I+ T+L A CR + R
Sbjct: 820  SMSEIYGLAPRMEHFSCMVDLLGRVGELNKMEDFLNQMPVKPNVLIWRTVLGACCRANGR 879

Query: 357  -LDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSW 415
               L   AA  L  + P NA   Y+ L+N+YA+  KWDDVA+ R++M++  V K  G SW
Sbjct: 880  NTALGRRAAEMLLEMEPTNAVN-YILLSNMYASGGKWDDVAKTRVAMRKAFVKKEAGCSW 938

Query: 416  IEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLL 475
            + +   VH F +GD+ HPE   I+EKLKEL  +M+LAGY+P+  FAL+ +  E KE+LL 
Sbjct: 939  VTMKDGVHVFVAGDKSHPEKDLIYEKLKELNGKMRLAGYIPETRFALYDLEGESKEELLS 998

Query: 476  FHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFK 535
            +HSEK+A+AF L + P   PIR+ KNLRVCGDCH A KYIS I +R+I++RD+ RFHHF+
Sbjct: 999  YHSEKIAVAFVLTR-PSKMPIRILKNLRVCGDCHSAFKYISQIVERQIVLRDSNRFHHFE 1057

Query: 536  DGTCSCGDYW 545
            +G CSCGD+W
Sbjct: 1058 NGKCSCGDFW 1067



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 80/304 (26%), Positives = 143/304 (47%), Gaps = 26/304 (8%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK- 68
           N +++ +    G +  A+  FD I   ++VS N M+S +     D V+AFD F  +  + 
Sbjct: 215 NVLISMYGNALGMVDYARRAFDSIWPRNLVSLNSMIS-VYCQRGDAVSAFDIFSTMQKEV 273

Query: 69  -------DTASWNTMISGFVQKKNMAKAR-DLFLAMPEKNSV-----SWSAMISGYIECG 115
                  +  ++ ++IS      N      +  L   EK+         SA++SG+ + G
Sbjct: 274 MGDGLKPNEYTFGSLISATCSLANSGLVLLEQLLTRVEKSGFLHDLYVGSALVSGFAKAG 333

Query: 116 QLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSL 175
            +  A  +F+    ++VV+   +I      G V     E+ ++L  M +   +  N +S 
Sbjct: 334 SIGYAKNIFQKMSYRNVVSLNGLI-----IGLVRQKRGEEAVELF-MEMKDSVELNPNSY 387

Query: 176 SSVLLGCSHLSSLQLGK----QVHQLVFKSPLCKDTTAL-TPLISMYCKCGDLEDACKLF 230
             +L        L+ GK    +VH  + +S L     A+   LI+MY KCG + DAC +F
Sbjct: 388 MIILTAFPEFHVLENGKRKGSEVHAFLIRSGLLNAQIAIGNGLINMYAKCGAINDACVVF 447

Query: 231 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVD 290
             +  KD VTWN+MI+G  Q+ +  +A++ F +M+   + P + T ++ L +C   G + 
Sbjct: 448 RLMDNKDSVTWNSMITGLDQNKQFLEAVKTFQEMRRTELYPSNFTMISALSSCASLGWIS 507

Query: 291 LGIQ 294
           +G Q
Sbjct: 508 VGEQ 511



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 88/326 (26%), Positives = 143/326 (43%), Gaps = 50/326 (15%)

Query: 59  FDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLD 118
              F+   + D    NT+I+ + +  ++   R +F  MP +N VSWS +ISGY      +
Sbjct: 97  LQLFKNGFVNDLFLCNTLINIYARVGDLGSGRKVFDEMPLRNLVSWSCLISGYTRNRMPN 156

Query: 119 KAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSV 178
           +A ELF                                    R M+  G  PN  +  SV
Sbjct: 157 EACELF------------------------------------RKMVSDGFMPNHYAFGSV 180

Query: 179 LLGCSHLS--SLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKC-GDLEDACKLFLEIQR 235
           +  C       L+ G Q+H L+ K+    D TA   LISMY    G ++ A + F  I  
Sbjct: 181 IRACQECGEYGLKFGMQIHGLMSKTQYVNDVTASNVLISMYGNALGMVDYARRAFDSIWP 240

Query: 236 KDVVTWNAMISGYAQHGKGEKALRLFDKMKDE----GMKPDSITFVALLLA-CN--HAGL 288
           +++V+ N+MIS Y Q G    A  +F  M+ E    G+KP+  TF +L+ A C+  ++GL
Sbjct: 241 RNLVSLNSMISVYCQRGDAVSAFDIFSTMQKEVMGDGLKPNEYTFGSLISATCSLANSGL 300

Query: 289 VDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLL 348
           V L  +   + V   G        + +V    +AG +  A ++ +KM ++   ++ G ++
Sbjct: 301 VLL--EQLLTRVEKSGFLHDLYVGSALVSGFAKAGSIGYAKNIFQKMSYRNVVSLNGLII 358

Query: 349 SACRVHKRLDLAE-FAAM-NLFNLNP 372
              R  +  +  E F  M +   LNP
Sbjct: 359 GLVRQKRGEEAVELFMEMKDSVELNP 384



 Score = 85.1 bits (209), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 76/344 (22%), Positives = 148/344 (43%), Gaps = 51/344 (14%)

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP---EKNSVSW---------- 104
           A + FQ++  ++  S N +I G V++K   +A +LF+ M    E N  S+          
Sbjct: 338 AKNIFQKMSYRNVVSLNGLIIGLVRQKRGEEAVELFMEMKDSVELNPNSYMIILTAFPEF 397

Query: 105 ------------------------------SAMISGYIECGQLDKAVELFKVAPVKSVVA 134
                                         + +I+ Y +CG ++ A  +F++   K  V 
Sbjct: 398 HVLENGKRKGSEVHAFLIRSGLLNAQIAIGNGLINMYAKCGAINDACVVFRLMDNKDSVT 457

Query: 135 WTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQV 194
           W +MI+G       +N    + +K  + M    + P+  ++ S L  C+ L  + +G+Q+
Sbjct: 458 WNSMITGL-----DQNKQFLEAVKTFQEMRRTELYPSNFTMISALSSCASLGWISVGEQL 512

Query: 195 HQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKG 254
           H    K  L  D +    L+++Y +CG +++  K F  +   D V+WN++I   A     
Sbjct: 513 HCEGLKLGLDLDVSVSNALLALYGECGYVKECQKAFSLMLDYDHVSWNSLIGALADSEPS 572

Query: 255 E-KALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYT 313
             +A+  F  M   G  P+ +TF+ +L A +   L +LG Q   ++V    +AA      
Sbjct: 573 MLEAVESFLVMMRAGWDPNRVTFITILAAVSSLSLHELGKQ-IHALVLKRNVAADTAIEN 631

Query: 314 CMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRL 357
            ++   G+ G +    ++  +M  +     + +++S   +H  L
Sbjct: 632 ALLACYGKCGDMGYCENIFSRMSDRQDEVSWNSMISG-YIHNEL 674



 Score = 68.6 bits (166), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 54/199 (27%), Positives = 85/199 (42%), Gaps = 40/199 (20%)

Query: 192 KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQH 251
           +++H  +FK+    D      LI++Y + GDL    K+F E+  +++V+W+ +ISGY ++
Sbjct: 93  EELHLQLFKNGFVNDLFLCNTLINIYARVGDLGSGRKVFDEMPLRNLVSWSCLISGYTRN 152

Query: 252 GKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDL--GIQYFDSM-----VND-- 302
               +A  LF KM  +G  P+   F +++ AC   G   L  G+Q    M     VND  
Sbjct: 153 RMPNEACELFRKMVSDGFMPNHYAFGSVIRACQECGEYGLKFGMQIHGLMSKTQYVNDVT 212

Query: 303 --------YGIAAKPDHY----------------TCMVDLLGRAGKLVEAVDLIKKMP-- 336
                   YG A     Y                  M+ +  + G  V A D+   M   
Sbjct: 213 ASNVLISMYGNALGMVDYARRAFDSIWPRNLVSLNSMISVYCQRGDAVSAFDIFSTMQKE 272

Query: 337 -----FKPQPAIFGTLLSA 350
                 KP    FG+L+SA
Sbjct: 273 VMGDGLKPNEYTFGSLISA 291


>gi|359494657|ref|XP_002264130.2| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Vitis vinifera]
          Length = 1724

 Score =  387 bits (993), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 205/535 (38%), Positives = 305/535 (57%), Gaps = 18/535 (3%)

Query: 21   GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSD--DVVAAFDFFQRLPIKDTASWNTMIS 78
            G + +A+++   +PQPD V++N ++     N +  + V A+   +   I   A++ TM+S
Sbjct: 1198 GMMMEAKKVLQTMPQPDRVTWNALIGGHAENEEPNEAVKAYKLIREKGIP--ANYITMVS 1255

Query: 79   GF--------VQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVK 130
                      + K  M     + L   E +    +++I+ Y +CG L+ +  +F     K
Sbjct: 1256 VLGACSAPDDLLKHGMPIHAHIVLTGFESDDYVKNSLITMYAKCGDLNSSNYIFDGLGNK 1315

Query: 131  SVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQL 190
            S + W AM++     G       E+ LK+   M  +G+  +  S S  L   ++L+ L+ 
Sbjct: 1316 SPITWNAMVAANAHHG-----CGEEALKIFGEMRNVGVNLDQFSFSGGLAATANLAVLEE 1370

Query: 191  GKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQ 250
            G+Q+H LV K     D       + MY KCG++ D  K+  +   +  ++WN +IS +A+
Sbjct: 1371 GQQLHGLVIKLGFESDLHVTNAAMDMYGKCGEMHDVLKMLPQPINRSRLSWNILISAFAR 1430

Query: 251  HGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPD 310
            HG  +KA   F +M   G KPD +TFV+LL ACNH GLVD G+ Y+DSM  ++G+    +
Sbjct: 1431 HGCFQKARETFHEMLKLGPKPDHVTFVSLLSACNHGGLVDEGLAYYDSMTREFGVFPGIE 1490

Query: 311  HYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNL 370
            H  C++DLLGR+G+L  A   IK+MP  P    + +LL+ACR+H  L+LA   A +L  L
Sbjct: 1491 HCVCIIDLLGRSGRLSHAEGFIKEMPVPPNDLAWRSLLAACRIHGNLELARKTAEHLLEL 1550

Query: 371  NPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDR 430
            +P++ +  YV  +N+ A   KW+DV  +R  M  NN+ K P  SW+++   VH F  G++
Sbjct: 1551 DPSDDSA-YVLYSNVCATSGKWEDVENLRKEMGSNNIKKQPACSWVKLKDKVHSFGMGEK 1609

Query: 431  VHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKV 490
             HP+   I  KL EL K  K AGYVPD  FALH + EE KE  L  HSE+LA+AFGLI  
Sbjct: 1610 YHPQASRISAKLGELMKMTKEAGYVPDTSFALHDMDEEQKEYNLWNHSERLALAFGLINT 1669

Query: 491  PLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
            P  + +R+FKNLRVCGDCH   K++S I  R+I++RD  RFHHF  G CSCGDYW
Sbjct: 1670 PESSTLRIFKNLRVCGDCHSVYKFVSGIVGRKIVLRDPYRFHHFSGGKCSCGDYW 1724



 Score =  242 bits (617), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 143/414 (34%), Positives = 227/414 (54%), Gaps = 12/414 (2%)

Query: 11  SVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLN--SDDVVAAFDFFQRLP-I 67
           S L  F  + GK++DA  LF  + + DVVS+N M+    +   +DD    F    R   +
Sbjct: 170 SALVDFHSKCGKMEDASYLFGTMMERDVVSWNAMIGGYAVQGFADDSFCMFRSMLRGGLV 229

Query: 68  KDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSW----SAMISGYIECGQLDKAVEL 123
            D  +  +++    +   +  A  +   + +    S+      +I+ Y + G L  A +L
Sbjct: 230 PDCYTLGSVLRASAEGGGLIIANQIHGIITQLGYGSYDIVTGLLINAYAKNGSLRSAKDL 289

Query: 124 FKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCS 183
            K    K + + TA+I+GY      E  ++ D L L + M  + I  +   L S+L  C+
Sbjct: 290 RKGMLKKDLFSSTALITGYAH----EGIYSVDALDLFKEMNQMNIGMDDVILCSMLNICA 345

Query: 184 HLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNA 243
           +L+S  LG Q+H    K     D      LI MY K G++EDA + F E++ K+V++W +
Sbjct: 346 NLASFALGTQIHAFALKYQPSYDVAMGNALIDMYAKSGEIEDAKRAFDEMEEKNVISWTS 405

Query: 244 MISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDY 303
           +ISGYA+HG G  A+ L+ KM+ +G KP+ +TF++LL AC+H GL   G + F++MVN Y
Sbjct: 406 LISGYAKHGYGHMAVSLYKKMESKGFKPNDVTFLSLLFACSHTGLTAEGCECFNNMVNKY 465

Query: 304 GIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFA 363
            I  + +HY+CMVDL  R G L EA +L+ K+  K   +++G +L A  ++  + L + A
Sbjct: 466 NIKPRAEHYSCMVDLFARQGLLEEAYNLLCKIDIKHNASLWGAILGASSIYGYMSLGKEA 525

Query: 364 AMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIE 417
           A NLFN+ P N+   YV LA+IY+A   WDD  +IR  M+E +  K  GYS+ +
Sbjct: 526 ASNLFNMQPENSVN-YVVLASIYSAAGLWDDAWKIRKLMEERSTKKNAGYSFFQ 578



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 80/270 (29%), Positives = 124/270 (45%), Gaps = 12/270 (4%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI 164
           + +I  Y++ G +  A  +F   P +SVV+WTAM+SGY + G  E ++      L   M 
Sbjct: 69  TKLIIFYVKVGDVIAARNVFDGMPERSVVSWTAMVSGYSQNGRFEKAFV-----LFSDMR 123

Query: 165 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 224
             G++ N  +  S L  C+ L  L +G QV   + K    ++    + L+  + KCG +E
Sbjct: 124 HCGVKANQFTYGSALRACTSLRCLDMGIQVQGCIQKGRFVENLFVKSALVDFHSKCGKME 183

Query: 225 DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 284
           DA  LF  +  +DVV+WNAMI GYA  G  + +  +F  M   G+ PD  T  ++L A  
Sbjct: 184 DASYLFGTMMERDVVSWNAMIGGYAVQGFADDSFCMFRSMLRGGLVPDCYTLGSVLRASA 243

Query: 285 HAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDL----IKKMPFKPQ 340
             G + +  Q    ++   G  +       +++   + G L  A DL    +KK  F   
Sbjct: 244 EGGGLIIANQ-IHGIITQLGYGSYDIVTGLLINAYAKNGSLRSAKDLRKGMLKKDLFSST 302

Query: 341 PAIFGTLLSACRVHKRLDLAEFAAMNLFNL 370
             I G           LDL  F  MN  N+
Sbjct: 303 ALITGYAHEGIYSVDALDL--FKEMNQMNI 330



 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 107/425 (25%), Positives = 166/425 (39%), Gaps = 96/425 (22%)

Query: 42  NIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPE--- 98
           N  L    +   DV+AA + F  +P +   SW  M+SG+ Q     KA  LF  M     
Sbjct: 68  NTKLIIFYVKVGDVIAARNVFDGMPERSVVSWTAMVSGYSQNGRFEKAFVLFSDMRHCGV 127

Query: 99  ------------------------------------KNSVSWSAMISGYIECGQLDKAVE 122
                                               +N    SA++  + +CG+++ A  
Sbjct: 128 KANQFTYGSALRACTSLRCLDMGIQVQGCIQKGRFVENLFVKSALVDFHSKCGKMEDASY 187

Query: 123 LFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGC 182
           LF     + VV+W AMI GY   G+     A+D   + R M+  G+ P+  +L SVL   
Sbjct: 188 LFGTMMERDVVSWNAMIGGYAVQGF-----ADDSFCMFRSMLRGGLVPDCYTLGSVLRAS 242

Query: 183 SHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWN 242
           +    L +  Q+H ++ +            LI+ Y K G L  A  L   + +KD+ +  
Sbjct: 243 AEGGGLIIANQIHGIITQLGYGSYDIVTGLLINAYAKNGSLRSAKDLRKGMLKKDLFSST 302

Query: 243 AMISGYAQHG-KGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN 301
           A+I+GYA  G     AL LF +M    +  D +   ++L  C +     LG Q     ++
Sbjct: 303 ALITGYAHEGIYSVDALDLFKEMNQMNIGMDDVILCSMLNICANLASFALGTQ-----IH 357

Query: 302 DYGIAAKPDHYTCM----VDLLGRAGKLVE------------------------------ 327
            + +  +P +   M    +D+  ++G++ +                              
Sbjct: 358 AFALKYQPSYDVAMGNALIDMYAKSGEIEDAKRAFDEMEEKNVISWTSLISGYAKHGYGH 417

Query: 328 -AVDLIKKMP---FKPQPAIFGTLLSACRVHKRLDLAE----FAAM-NLFNLNP-ANAAG 377
            AV L KKM    FKP    F +LL AC  H  L  AE    F  M N +N+ P A    
Sbjct: 418 MAVSLYKKMESKGFKPNDVTFLSLLFACS-HTGLT-AEGCECFNNMVNKYNIKPRAEHYS 475

Query: 378 CYVQL 382
           C V L
Sbjct: 476 CMVDL 480



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 69/266 (25%), Positives = 116/266 (43%), Gaps = 44/266 (16%)

Query: 74   NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVV 133
            NT+I+ + +  N+  AR +F  M  +N  SWS M+SGY+  G  ++AV LF         
Sbjct: 783  NTLINMYSKFGNIEHARYVFDEMRHRNEASWSTMLSGYVRVGLYEEAVGLFC-------- 834

Query: 134  AWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSL-QLGK 192
                                         M GLG+ PN   ++S++  CS    +   G 
Sbjct: 835  ----------------------------QMWGLGVEPNGFMVASLITACSRSGYMADEGF 866

Query: 193  QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHG 252
            QVH  V K+ +  D    T L+  Y   G + +A KLF E+   +VV+W +++ GY+  G
Sbjct: 867  QVHGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSG 926

Query: 253  KGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVD---LGIQYFDSMVNDYGIAAKP 309
               + L ++ +M+ EG+  +  TF  +  +C   GL++   LG Q    ++  YG     
Sbjct: 927  NPGEVLNVYQRMRQEGVSGNQNTFATVTSSC---GLLEDQVLGYQVLGHII-QYGFEDSV 982

Query: 310  DHYTCMVDLLGRAGKLVEAVDLIKKM 335
                 ++ +      + EA  +   M
Sbjct: 983  SVANSLISMFSSFSSVEEACYVFDHM 1008



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 107/449 (23%), Positives = 209/449 (46%), Gaps = 45/449 (10%)

Query: 11   SVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD- 69
            + L  F    G + +AQ+LF+++P  +VVS+  ++     +S +     + +QR+  +  
Sbjct: 885  TALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLM-VGYSDSGNPGEVLNVYQRMRQEGV 943

Query: 70   TASWNTMIS-----GFVQKKNMA-KARDLFLAMPEKNSVS-WSAMISGYIECGQLDKAVE 122
            + + NT  +     G ++ + +  +     +    ++SVS  +++IS +     +++A  
Sbjct: 944  SGNQNTFATVTSSCGLLEDQVLGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSVEEACY 1003

Query: 123  LFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGC 182
            +F       +++W AMIS Y   G    S     L+    M  L    N+++LSS+L  C
Sbjct: 1004 VFDHMNECDIISWNAMISAYAHHGLCRES-----LRCFHWMRHLHNETNSTTLSSLLSVC 1058

Query: 183  SHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWN 242
            S + +L+ G+ +H LV K  L  +      L+++Y + G  EDA  +F  +  +D+++WN
Sbjct: 1059 SSVDNLKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQAMTERDLISWN 1118

Query: 243  AMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC-NHAGLVDLGIQYFDSMV- 300
            +M++ Y Q GK    L++  ++   G   + +TF + L AC N   L++  I +   +V 
Sbjct: 1119 SMMACYVQDGKCLDGLKILAELLQMGKVMNHVTFASALAACSNPECLIESKIVHALIIVA 1178

Query: 301  --NDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLD 358
              +D+ I         +V + G+ G ++EA  +++ MP +P    +  L+     ++  +
Sbjct: 1179 GFHDFLIVGNA-----LVTMYGKLGMMMEAKKVLQTMP-QPDRVTWNALIGGHAENEEPN 1232

Query: 359  LAEFAAMNLFNLN--PANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWI 416
             A   A  L      PAN    Y+ + ++  A    DD+ +            MP    I
Sbjct: 1233 EA-VKAYKLIREKGIPAN----YITMVSVLGACSAPDDLLK----------HGMP----I 1273

Query: 417  EVGTVVHEFRSGDRVHPELVSIHEKLKEL 445
                V+  F S D V   L++++ K  +L
Sbjct: 1274 HAHIVLTGFESDDYVKNSLITMYAKCGDL 1302



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 80/159 (50%), Gaps = 2/159 (1%)

Query: 179 LLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDV 238
           L G S ++S   GK +H       +         LI+MY K G++E A  +F E++ ++ 
Sbjct: 751 LKGFSEITSQMAGKALHAFCIVGSVNLGIFQTNTLINMYSKFGNIEHARYVFDEMRHRNE 810

Query: 239 VTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG-LVDLGIQYFD 297
            +W+ M+SGY + G  E+A+ LF +M   G++P+     +L+ AC+ +G + D G Q   
Sbjct: 811 ASWSTMLSGYVRVGLYEEAVGLFCQMWGLGVEPNGFMVASLITACSRSGYMADEGFQVHG 870

Query: 298 SMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 336
            +V   GI       T +V   G  G +  A  L ++MP
Sbjct: 871 FVVKT-GILGDVYVGTALVHFYGSIGLVYNAQKLFEEMP 908



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 38/104 (36%), Positives = 57/104 (54%)

Query: 191 GKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQ 250
           G  +H  +  +    D    T LI  Y K GD+  A  +F  +  + VV+W AM+SGY+Q
Sbjct: 49  GHLIHTHLITNGFGSDLHLNTKLIIFYVKVGDVIAARNVFDGMPERSVVSWTAMVSGYSQ 108

Query: 251 HGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ 294
           +G+ EKA  LF  M+  G+K +  T+ + L AC     +D+GIQ
Sbjct: 109 NGRFEKAFVLFSDMRHCGVKANQFTYGSALRACTSLRCLDMGIQ 152


>gi|224075493|ref|XP_002304652.1| predicted protein [Populus trichocarpa]
 gi|222842084|gb|EEE79631.1| predicted protein [Populus trichocarpa]
          Length = 820

 Score =  387 bits (993), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 205/537 (38%), Positives = 305/537 (56%), Gaps = 45/537 (8%)

Query: 48  ILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLF------LAMPEK-- 99
           + + S DV  A   F+ +P  D   W+ MI+ + Q +   +A ++F      L +P +  
Sbjct: 290 LYIKSGDVDDALQVFEEMPKDDVIPWSFMIARYAQSEQSEEAIEMFCRMRRGLVLPNQFT 349

Query: 100 -------------------------------NSVSWSAMISGYIECGQLDKAVELFKVAP 128
                                          N    +A++  Y +CG+++ +++LF  +P
Sbjct: 350 LASLLQACASLVDLQLGNQIHCHVVKVGLDMNVFVSNALMDMYAKCGRMENSLQLFSESP 409

Query: 129 VKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSL 188
             + V+W  +I GY++ G       E  L L + M+   ++    + SSVL  C+ +++L
Sbjct: 410 NCTDVSWNTVIVGYVQAGN-----GEKALILFKDMLECQVQGTEVTYSSVLRACAGIAAL 464

Query: 189 QLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGY 248
           + G Q+H L  K+   K+T     LI MY KCG+++DA  +F  ++  D V+WNAMISGY
Sbjct: 465 EPGSQIHSLSVKTIYDKNTVVGNALIDMYAKCGNIKDARLVFDMLREHDQVSWNAMISGY 524

Query: 249 AQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK 308
           + HG   +AL+ F+ M +   KPD +TFV +L AC++AGL+D G  YF SMV +Y I   
Sbjct: 525 SVHGLYGEALKTFESMLETECKPDKVTFVGILSACSNAGLLDRGQAYFKSMVEEYDIEPC 584

Query: 309 PDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLF 368
            +HYTCMV LLGR+G L +A  L+ ++PF+P   ++  LLSAC +H  ++L   +A  + 
Sbjct: 585 AEHYTCMVWLLGRSGHLDKAAKLVHEIPFEPSVMVWRALLSACVIHNDVELGRISAQRVL 644

Query: 369 NLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSG 428
            + P + A  +V L+NIYA  ++W +VA IR SMK   + K PG SWIE    VH F  G
Sbjct: 645 EIEPEDEAT-HVLLSNIYANARRWGNVASIRTSMKRKGIRKEPGLSWIENQGRVHYFSVG 703

Query: 429 DRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLI 488
           D  HP+   I+  L+ L  + +  GYVPD    L  V +  KEQ L  HSE+LA+A+GLI
Sbjct: 704 DTSHPDTKLINGMLEWLNMKARNEGYVPDFSSVLLDVEDVDKEQRLWVHSERLALAYGLI 763

Query: 489 KVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           + P  +P+R+ KNLR+C DCH A K IS I +R+II+RD  RFHHF +G CSCGDYW
Sbjct: 764 RTPSISPLRIIKNLRICADCHAAIKLISKIVQRDIIIRDMNRFHHFHEGICSCGDYW 820



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 94/340 (27%), Positives = 163/340 (47%), Gaps = 25/340 (7%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLS----CILLNSDDVVAAFDFFQRL 65
           N++L  F  +   L DA +LFD++P  + VS+  ++     C+  +      A   F RL
Sbjct: 82  NNILLNFYVKYDSLPDAAKLFDEMPDRNTVSFVTLIQGYSQCLRFSE-----AIGLFSRL 136

Query: 66  --------PIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQL 117
                   P   +     ++S    K   +    ++    + ++   +A+I  Y  CG  
Sbjct: 137 QGEGHELNPFVFSTVLKLLVSAEWAKLGFSVHACVYKLGFDSDAFVGTALIDCYSVCGYA 196

Query: 118 DKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSS 177
           + A ++F     K +V+WT M++ Y     VEN   E+ LKL   M  +G +PN  + +S
Sbjct: 197 ECARQVFDAIEYKDMVSWTGMVACY-----VENECFEESLKLFSRMRIVGFKPNNFTFAS 251

Query: 178 VLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKD 237
           VL  C  L    +GK VH   FK+   ++      LI +Y K GD++DA ++F E+ + D
Sbjct: 252 VLKACVGLEVFNVGKAVHGCAFKTSYLEELFVGVELIDLYIKSGDVDDALQVFEEMPKDD 311

Query: 238 VVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGI-QYF 296
           V+ W+ MI+ YAQ  + E+A+ +F +M+   + P+  T  +LL AC  A LVDL +    
Sbjct: 312 VIPWSFMIARYAQSEQSEEAIEMFCRMRRGLVLPNQFTLASLLQAC--ASLVDLQLGNQI 369

Query: 297 DSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 336
              V   G+         ++D+  + G++  ++ L  + P
Sbjct: 370 HCHVVKVGLDMNVFVSNALMDMYAKCGRMENSLQLFSESP 409



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 63/271 (23%), Positives = 108/271 (39%), Gaps = 33/271 (12%)

Query: 171 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 230
           N     S+L  C        GK +H  + K   C D  A   L++ Y K   L DA KLF
Sbjct: 43  NTYIYGSLLQSCIRNGDCATGKYLHCEIIKKGNCLDLFANNILLNFYVKYDSLPDAAKLF 102

Query: 231 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVD 290
            E+  ++ V++  +I GY+Q  +  +A+ LF +++ EG + +   F  +L     A    
Sbjct: 103 DEMPDRNTVSFVTLIQGYSQCLRFSEAIGLFSRLQGEGHELNPFVFSTVLKLLVSAEWAK 162

Query: 291 LGIQY--------FDS-------MVNDYGIAAKPD---------HYTCMVDLLGRAGKLV 326
           LG           FDS       +++ Y +    +          Y  MV   G     V
Sbjct: 163 LGFSVHACVYKLGFDSDAFVGTALIDCYSVCGYAECARQVFDAIEYKDMVSWTGMVACYV 222

Query: 327 ------EAVDLIKKM---PFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAG 377
                 E++ L  +M    FKP    F ++L AC   +  ++ +      F  +      
Sbjct: 223 ENECFEESLKLFSRMRIVGFKPNNFTFASVLKACVGLEVFNVGKAVHGCAFKTSYLEELF 282

Query: 378 CYVQLANIYAAMKKWDDVARIRLSMKENNVV 408
             V+L ++Y      DD  ++   M +++V+
Sbjct: 283 VGVELIDLYIKSGDVDDALQVFEEMPKDDVI 313



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 65/267 (24%), Positives = 102/267 (38%), Gaps = 60/267 (22%)

Query: 5   TTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQR 64
           T V+WN+V+ G+  Q G  + A  LF  + +  V    +  S +L     + A     Q 
Sbjct: 412 TDVSWNTVIVGYV-QAGNGEKALILFKDMLECQVQGTEVTYSSVLRACAGIAALEPGSQI 470

Query: 65  LPI-------KDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQL 117
             +       K+T   N +I  + +  N+  AR +F  + E + VSW+AMISGY      
Sbjct: 471 HSLSVKTIYDKNTVVGNALIDMYAKCGNIKDARLVFDMLREHDQVSWNAMISGY------ 524

Query: 118 DKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSS 177
                                 S +  +G        + LK    M+    +P+  +   
Sbjct: 525 ----------------------SVHGLYG--------EALKTFESMLETECKPDKVTFVG 554

Query: 178 VLLGCSHLSSLQLGKQVHQLVFKS--------PLCKDTTALTPLISMYCKCGDLEDACKL 229
           +L  CS+   L  G    Q  FKS        P  +  T +  L+    + G L+ A KL
Sbjct: 555 ILSACSNAGLLDRG----QAYFKSMVEEYDIEPCAEHYTCMVWLLG---RSGHLDKAAKL 607

Query: 230 FLEIQ-RKDVVTWNAMISGYAQHGKGE 255
             EI     V+ W A++S    H   E
Sbjct: 608 VHEIPFEPSVMVWRALLSACVIHNDVE 634


>gi|218192417|gb|EEC74844.1| hypothetical protein OsI_10704 [Oryza sativa Indica Group]
          Length = 614

 Score =  387 bits (993), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 201/485 (41%), Positives = 290/485 (59%), Gaps = 13/485 (2%)

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLF-----LAMPEKNSVSWSAMISGYI 112
           A+  F+ +  +D  SWN MISGF       +A D+F     L  P+ ++ + ++++    
Sbjct: 11  AYQMFEEMQYRDVVSWNAMISGFAHAGLFGRAMDVFRELVALQCPKPDAGTMASILPSMG 70

Query: 113 ECGQLDKAV--ELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRP 170
           +    D A+   +F       +++W AM++ Y       N    + ++L   M   GI P
Sbjct: 71  KARVEDIALLKGVFDEMRFTGLISWNAMLAVY-----TNNEMHVEAVELFMRMQKDGIEP 125

Query: 171 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 230
           +A +L++VL  C  +S+L LGK++H+++ +  +C        L+ MY  CG L++A  +F
Sbjct: 126 DAVTLATVLPSCGEVSALSLGKRIHEVIKRRRMCSSMLLENALMDMYANCGCLKEARDVF 185

Query: 231 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVD 290
             +  +DVV+W ++IS Y +HG G +A+ LF+KM  +G++PDSI FVA+L AC+HAGL+D
Sbjct: 186 DSMGTRDVVSWTSIISAYGRHGHGREAIDLFEKMCGQGLEPDSIAFVAILAACSHAGLLD 245

Query: 291 LGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSA 350
           +G  YF SM +++ IA K +HY CMVDLLGRAG + EA D I  MP KP   ++G LL A
Sbjct: 246 MGKHYFYSMTSEFHIAPKLEHYACMVDLLGRAGCIREAYDFIMVMPIKPNERVWGALLGA 305

Query: 351 CRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKM 410
           CR+H  +D+   AA +L  L P    G YV L+NIYA   +W DV+ +R  M+   + K+
Sbjct: 306 CRIHSNMDIGLLAADSLLRLAPKQ-TGYYVLLSNIYARAGRWADVSMVRSVMESKGIKKL 364

Query: 411 PGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVK 470
           PG S  E+G  VH F  GD  HP+   I++KL EL +R++  GY P++E  LH V EE K
Sbjct: 365 PGVSNAELGDSVHTFHIGDTSHPQSKMIYKKLSELLRRIREMGYNPEVEATLHDVEEEDK 424

Query: 471 EQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTR 530
           E  L  HSEKLAIAF LI    GTPIR+  NLR C DCH A K IS I  REII++D  R
Sbjct: 425 EGHLSVHSEKLAIAFLLINTNPGTPIRITMNLRTCSDCHHAAKLISTIAGREIILKDVNR 484

Query: 531 FHHFK 535
            H+ K
Sbjct: 485 IHYMK 489



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 54/238 (22%), Positives = 102/238 (42%), Gaps = 51/238 (21%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKI-----PQPDVVSY-NIMLSCILLNSDD 54
           M  +  V+WN++++GFA   G    A ++F ++     P+PD  +  +I+ S      +D
Sbjct: 18  MQYRDVVSWNAMISGFA-HAGLFGRAMDVFRELVALQCPKPDAGTMASILPSMGKARVED 76

Query: 55  VVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWS----- 105
           +      F  +      SWN M++ +   +   +A +LF+ M     E ++V+ +     
Sbjct: 77  IALLKGVFDEMRFTGLISWNAMLAVYTNNEMHVEAVELFMRMQKDGIEPDAVTLATVLPS 136

Query: 106 ------------------------------AMISGYIECGQLDKAVELFKVAPVKSVVAW 135
                                         A++  Y  CG L +A ++F     + VV+W
Sbjct: 137 CGEVSALSLGKRIHEVIKRRRMCSSMLLENALMDMYANCGCLKEARDVFDSMGTRDVVSW 196

Query: 136 TAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ 193
           T++IS Y + G+       + + L   M G G+ P++ +  ++L  CSH   L +GK 
Sbjct: 197 TSIISAYGRHGH-----GREAIDLFEKMCGQGLEPDSIAFVAILAACSHAGLLDMGKH 249



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 100/205 (48%), Gaps = 34/205 (16%)

Query: 216 MYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKD-EGMKPDSI 274
           MY +CG  +DA ++F E+Q +DVV+WNAMISG+A  G   +A+ +F ++   +  KPD+ 
Sbjct: 1   MYARCGRPDDAYQMFEEMQYRDVVSWNAMISGFAHAGLFGRAMDVFRELVALQCPKPDAG 60

Query: 275 TFVALLLACNHAGLVDLGI--QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLI 332
           T  ++L +   A + D+ +    FD M     I+     +  M+ +       VEAV+L 
Sbjct: 61  TMASILPSMGKARVEDIALLKGVFDEMRFTGLIS-----WNAMLAVYTNNEMHVEAVELF 115

Query: 333 KKMP---FKPQPAIFGTLLSAC----------RVHKRLD--------LAEFAAMNLFNLN 371
            +M     +P      T+L +C          R+H+ +         L E A M+++   
Sbjct: 116 MRMQKDGIEPDAVTLATVLPSCGEVSALSLGKRIHEVIKRRRMCSSMLLENALMDMY--- 172

Query: 372 PANAAGCYVQLANIYAAMKKWDDVA 396
            AN  GC  +  +++ +M   D V+
Sbjct: 173 -AN-CGCLKEARDVFDSMGTRDVVS 195


>gi|125552577|gb|EAY98286.1| hypothetical protein OsI_20194 [Oryza sativa Indica Group]
          Length = 874

 Score =  387 bits (993), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 208/514 (40%), Positives = 297/514 (57%), Gaps = 42/514 (8%)

Query: 68  KDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMI--------------- 108
           ++  SW  +ISG +Q  ++  A  LF  M E     N  ++SAM+               
Sbjct: 367 RNVVSWTAIISGCIQNGDIPLAVVLFSRMREDRVMPNEFTYSAMLKASLSILPPQIHAQV 426

Query: 109 ----------------SGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSW 152
                           + Y + G  + A+ +FK+   K VVAW+AM+S + + G  E + 
Sbjct: 427 IKTNYQHIPSVGTALLASYSKFGSTEDALSIFKMIEQKDVVAWSAMLSCHAQAGDCEGA- 485

Query: 153 AEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSS-LQLGKQVHQLVFKSPLCKDTTALT 211
                 L   M   GI+PN  ++SSV+  C+  S+ +  G+Q H +  K          +
Sbjct: 486 ----TYLFNKMAIQGIKPNEFTISSVIDACACPSAGVDQGRQFHAISIKYRYHDAICVSS 541

Query: 212 PLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKP 271
            L+SMY + G+++ A  +F     +D+V+WN+MISGYAQHG   KA+  F +M+  G++ 
Sbjct: 542 ALVSMYSRKGNIDSAQIVFERQTDRDLVSWNSMISGYAQHGYSMKAIETFRQMEASGIQM 601

Query: 272 DSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDL 331
           D +TF+A+++ C H GLV  G QYFDSMV D+ I    +HY CMVDL  RAGKL E + L
Sbjct: 602 DGVTFLAVIMGCTHNGLVVEGQQYFDSMVRDHKINPTMEHYACMVDLYSRAGKLDETMSL 661

Query: 332 IKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKK 391
           I+ MPF     ++ TLL ACRVHK ++L +F+A  L +L P +++  YV L+NIYAA  K
Sbjct: 662 IRDMPFPAGAMVWRTLLGACRVHKNVELGKFSADKLLSLEPHDSS-TYVLLSNIYAAAGK 720

Query: 392 WDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKL 451
           W +   +R  M    V K  G SWI++   VH F + D+ HP    I++KLK +  R+K 
Sbjct: 721 WKERDEVRKLMDYRKVKKEAGCSWIQIKNKVHSFIAFDKSHPMSDQIYKKLKVIITRLKQ 780

Query: 452 AGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRA 511
            GY P+  F LH + E+ KE +L+ HSE+LA+AFGLI  P GTP+++ KNLRVCGDCH  
Sbjct: 781 DGYSPNTSFVLHDIAEDQKEAMLVAHSERLALAFGLIATPPGTPLQIVKNLRVCGDCHMV 840

Query: 512 TKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
            K +S IE REII+RD +RFHHF  G CSCGD+W
Sbjct: 841 MKMVSMIEDREIIMRDCSRFHHFNGGACSCGDFW 874



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 63/256 (24%), Positives = 123/256 (48%), Gaps = 6/256 (2%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI 164
           ++++  Y++CG + + +E+F+  P K+VV WT++++G             + + L   M 
Sbjct: 139 TSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWTSLLTGC-----AHAQMHSEVMALFFRMR 193

Query: 165 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 224
             GI PN  + +SVL   +   +L LG++VH    K            L++MY KCG +E
Sbjct: 194 AEGIWPNPFTFASVLSAVASQGALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVE 253

Query: 225 DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 284
           DA  +F  ++ +D+V+WN +++G   +    +AL+LF + +    K    T+  ++  C 
Sbjct: 254 DAKSVFNWMETRDMVSWNTLMAGLQLNECELEALQLFHESRATMGKMTQSTYATVIKLCA 313

Query: 285 HAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIF 344
           +   + L  Q   S V  +G     +  T + D   + G+L +A+++            +
Sbjct: 314 NLKQLALARQ-LHSCVLKHGFHLTGNVMTALADAYSKCGELADALNIFSMTTGSRNVVSW 372

Query: 345 GTLLSACRVHKRLDLA 360
             ++S C  +  + LA
Sbjct: 373 TAIISGCIQNGDIPLA 388



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 55/209 (26%), Positives = 108/209 (51%), Gaps = 7/209 (3%)

Query: 167 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCK-DTTALTPLISMYCKCGDLED 225
           G+  ++++LS VL  C  +    LG+Q+H L  K    + + +A T L+ MY KCG + +
Sbjct: 94  GVLVDSATLSCVLKACRSVPDRVLGEQLHCLCVKCGHDRGEVSAGTSLVDMYMKCGSVCE 153

Query: 226 ACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNH 285
             ++F  + +K+VVTW ++++G A      + + LF +M+ EG+ P+  TF ++L A   
Sbjct: 154 GIEVFEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVAS 213

Query: 286 AGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFG 345
            G +DLG Q   +    +G  +       ++++  + G + +A  +   M  +   + + 
Sbjct: 214 QGALDLG-QRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVS-WN 271

Query: 346 TLLSACRVHKRLDLAEFAAMNLFNLNPAN 374
           TL++      +L+  E  A+ LF+ + A 
Sbjct: 272 TLMAGL----QLNECELEALQLFHESRAT 296


>gi|414587348|tpg|DAA37919.1| TPA: hypothetical protein ZEAMMB73_411767 [Zea mays]
          Length = 920

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 203/530 (38%), Positives = 306/530 (57%), Gaps = 13/530 (2%)

Query: 23  LKDAQELFDKIPQPDVVSYNIMLSCILLNS--DDVVAAFDFFQRLPI-KDTASWNTMISG 79
           L  A+++ + + + DVVS+  M++  + +   ++ +A F   Q   +  D     +  S 
Sbjct: 397 LDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASA 456

Query: 80  FVQKKNMAKARDL----FLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAW 135
               K M +   +    +++    +   W+ +++ Y  CG+ ++A  LF+    K  + W
Sbjct: 457 CAGIKAMRQGLQIHARVYVSGYAADISIWNTLVNLYARCGRSEEAFSLFREIDHKDEITW 516

Query: 136 TAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVH 195
             +ISG   FG  ++   E  L +   M   G + N  +  S +   ++L+ ++ GKQVH
Sbjct: 517 NGLISG---FG--QSRLYEQALMVFMKMSQAGAKYNVFTFISAISALANLADIKQGKQVH 571

Query: 196 QLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGE 255
               K+    +T     LIS+Y KCG +EDA  +F E+  ++ V+WN +I+  +QHG+G 
Sbjct: 572 GRAVKTGHTSETEVANALISLYGKCGSIEDAKMIFSEMSLRNEVSWNTIITSCSQHGRGL 631

Query: 256 KALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCM 315
           +AL LFD+MK EG+KP+ +TF+ +L AC+H GLV+ G+ YF SM N YG+   PDHY C+
Sbjct: 632 EALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSNVYGLNPIPDHYACV 691

Query: 316 VDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANA 375
           VD+LGRAG+L  A   + +MP      I+ TLLSAC+VHK +++ E AA +L  L P ++
Sbjct: 692 VDILGRAGQLDRARRFVDEMPITANAMIWRTLLSACKVHKNIEIGELAAKHLLELEPHDS 751

Query: 376 AGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPEL 435
           A  YV L+N YA   KW +  ++R  MK+  + K PG SWIEV   VH F  GDR+HP  
Sbjct: 752 AS-YVLLSNAYAVTGKWANRDQVRKMMKDRGIRKEPGRSWIEVKNAVHAFFVGDRLHPLS 810

Query: 436 VSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTP 495
             I++ L EL  R+   GY  +     H   +E K+     HSEKLA+AFGL+ +P   P
Sbjct: 811 DQIYKFLSELNDRLSKIGYKQENPNLFHEKEQEQKDPTAFVHSEKLAVAFGLMTLPPCIP 870

Query: 496 IRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           +RV KNLRVC DCH   K+ S + +REI++RD  RFHHF  G+CSCGDYW
Sbjct: 871 LRVIKNLRVCDDCHSWMKFTSEVTRREIVLRDVYRFHHFNSGSCSCGDYW 920



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 83/327 (25%), Positives = 159/327 (48%), Gaps = 13/327 (3%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLS--CILLNSDDVVAAFDFFQRLPIK-DTASWNTMI 77
           G  K A+ +F  +   D V++N ++S      + +  +  FD  Q   ++ D  +  +++
Sbjct: 193 GSFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLL 252

Query: 78  SGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISGYIECGQLDKAVELFKVAPVKSVV 133
           +      ++ K + L   + +     + ++  +++  Y++CG ++ A ++F +    +VV
Sbjct: 253 AACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVV 312

Query: 134 AWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ 193
            W  M+  Y +   +  S+     ++   M   GI PN  +   +L  C+    ++LG+Q
Sbjct: 313 LWNLMLVAYGQISDLAKSF-----EIFGQMQATGIHPNKFTYPCILRTCTCTGQIELGEQ 367

Query: 194 VHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGK 253
           +H L  K+    D      LI MY K   L+ A K+   ++++DVV+W +MI+GY QH  
Sbjct: 368 IHSLSIKNGFESDMYVSGVLIDMYSKYRCLDKARKILEMLEKRDVVSWTSMIAGYVQHDF 427

Query: 254 GEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYT 313
            E+AL  F +M+D G+ PD+I   +   AC     +  G+Q   + V   G AA    + 
Sbjct: 428 CEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQ-IHARVYVSGYAADISIWN 486

Query: 314 CMVDLLGRAGKLVEAVDLIKKMPFKPQ 340
            +V+L  R G+  EA  L +++  K +
Sbjct: 487 TLVNLYARCGRSEEAFSLFREIDHKDE 513



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 70/226 (30%), Positives = 116/226 (51%), Gaps = 6/226 (2%)

Query: 107 MISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGL 166
           +I  Y + G + +A ++FK    +  V+W AM+SGY + G       ++  +L   M   
Sbjct: 84  LIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQRGL-----GKEAFRLYSQMHWT 138

Query: 167 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 226
            + P    LSSVL  C+       G+ +H  V+K   C +T     LI++Y   G  + A
Sbjct: 139 AVIPTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNALIALYLGFGSFKLA 198

Query: 227 CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHA 286
            ++F ++   D VT+N +ISG+AQ G GE AL++FD+M+  G++PD +T  +LL AC   
Sbjct: 199 ERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASV 258

Query: 287 GLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLI 332
           G +  G Q   S +   G++        ++DL  + G +  A D+ 
Sbjct: 259 GDLQKGKQ-LHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIF 303



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 77/303 (25%), Positives = 142/303 (46%), Gaps = 48/303 (15%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDK------IPQPDVVSYNIMLSCI---LLN 51
           ++ +  V+W ++L+G+A QRG  K+A  L+ +      IP P V+S +++ +C    L  
Sbjct: 104 LSSRDHVSWVAMLSGYA-QRGLGKEAFRLYSQMHWTAVIPTPYVLS-SVLSACTKGKLFA 161

Query: 52  SDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGY 111
              ++ A   +++    +T   N +I+ ++   +   A  +F  M   + V+++ +ISG+
Sbjct: 162 QGRMIHA-QVYKQAFCSETFVGNALIALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGH 220

Query: 112 IECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPN 171
            +CG                                      E  L++   M   G+RP+
Sbjct: 221 AQCGH------------------------------------GECALQIFDEMQLSGLRPD 244

Query: 172 ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFL 231
             +++S+L  C+ +  LQ GKQ+H  + K+ +  D      L+ +Y KCGD+E A  +F 
Sbjct: 245 CVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFN 304

Query: 232 EIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDL 291
              R +VV WN M+  Y Q     K+  +F +M+  G+ P+  T+  +L  C   G ++L
Sbjct: 305 LGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNKFTYPCILRTCTCTGQIEL 364

Query: 292 GIQ 294
           G Q
Sbjct: 365 GEQ 367



 Score = 48.1 bits (113), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 69/290 (23%), Positives = 127/290 (43%), Gaps = 36/290 (12%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNI--MLSCI--LLNSDDVVAAF 59
           K  + WN +++GF + R   + A  +F K+ Q     YN+   +S I  L N  D+    
Sbjct: 511 KDEITWNGLISGFGQSR-LYEQALMVFMKMSQAG-AKYNVFTFISAISALANLADIKQGK 568

Query: 60  DFFQRL----PIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECG 115
               R        +T   N +IS + +  ++  A+ +F  M  +N VSW+ +I+   + G
Sbjct: 569 QVHGRAVKTGHTSETEVANALISLYGKCGSIEDAKMIFSEMSLRNEVSWNTIITSCSQHG 628

Query: 116 QLDKAVELFKVAPVKSV----VAWTAMISGYMKFGYVENSWAEDGLKLLRMM---IGLGI 168
           +  +A++LF     + +    V +  +++     G V     E+GL   + M    GL  
Sbjct: 629 RGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLV-----EEGLSYFKSMSNVYGLNP 683

Query: 169 RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKC------GD 222
            P+  +    +LG     + QL +   + V + P+  +      L+S  CK       G+
Sbjct: 684 IPDHYACVVDILG----RAGQLDR-ARRFVDEMPITANAMIWRTLLSA-CKVHKNIEIGE 737

Query: 223 LEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPD 272
           L  A K  LE++  D  ++  + + YA  GK     ++   MKD G++ +
Sbjct: 738 L--AAKHLLELEPHDSASYVLLSNAYAVTGKWANRDQVRKMMKDRGIRKE 785


>gi|297805646|ref|XP_002870707.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297316543|gb|EFH46966.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 517

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 205/523 (39%), Positives = 299/523 (57%), Gaps = 48/523 (9%)

Query: 65  LPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK------NSVSWSAMISG-------- 110
           +P +D  +WN++ISG+  +  + K  ++   M         N V++ +MIS         
Sbjct: 1   MPERDLVAWNSLISGYAGRGYLGKCFEVLSRMMRSEVGFRPNEVTFLSMISACVHGGNKE 60

Query: 111 ---------------------------YIECGQLDKAVELFKVAPVKSVVAWTAMISGYM 143
                                      Y + G L  + +LF+   VK++V+W  MI    
Sbjct: 61  EGVCIHGLVMKSGVLEEVKVVNALMNLYGKTGDLISSCKLFEDLSVKNLVSWNTMI---- 116

Query: 144 KFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPL 203
              +++N  AE+GL    M   +G++P+ ++  +VL  C  +  ++L + +H L+     
Sbjct: 117 -VIHLQNGLAEEGLAYFNMSRWVGLKPDQATFLAVLRVCEDIGVVRLSQGIHGLIMFCGF 175

Query: 204 CKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDK 263
             +T   T L+ +Y K G LED+  +FLEI   D + W AM++ YA HG G  A++ F+ 
Sbjct: 176 NANTCITTALLDLYAKLGRLEDSSTVFLEITSPDSMAWTAMLAAYATHGYGRDAIKHFEL 235

Query: 264 MKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAG 323
           M   G+ PD +TF  LL AC+H+GLV+ G  YF++M   Y I  + DHY+CMVDL+GR+G
Sbjct: 236 MVHYGLSPDHVTFTHLLNACSHSGLVEEGRYYFETMSKRYRIEPRLDHYSCMVDLMGRSG 295

Query: 324 KLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLA 383
            L +A  LIK+MP +P   ++G LL ACRV+K   L   AA  LF L P +    Y+ L+
Sbjct: 296 LLQDAYGLIKEMPMEPSSGVWGALLGACRVYKDTQLGTKAAKRLFELEPRDGRN-YIMLS 354

Query: 384 NIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLK 443
           NIY+A   W D +RIR  MK+  +V+  GYS+IE G  +H+F  GD  HPE   I +KLK
Sbjct: 355 NIYSASGLWKDASRIRNLMKQKGLVRASGYSYIEHGNKIHKFVVGDWSHPESEKIQKKLK 414

Query: 444 ELEKRMKLA-GYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNL 502
           E+ K+MK   G+    EF LH V E+VKE+++  HSEK+A+AFGL+ +    PI + KNL
Sbjct: 415 EIRKKMKSELGFKSRTEFVLHDVDEDVKEEMINQHSEKIAMAFGLLVISPMEPIIIRKNL 474

Query: 503 RVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           R+CGDCH   K IS IEKR II+RD+ RFHHF +G+CSC DYW
Sbjct: 475 RICGDCHETAKAISLIEKRRIIIRDSKRFHHFLEGSCSCRDYW 517



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 78/350 (22%), Positives = 138/350 (39%), Gaps = 97/350 (27%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQ------PDVVSYNIMLS-------- 46
           M  +  V WNS+++G+A  RG L    E+  ++ +      P+ V++  M+S        
Sbjct: 1   MPERDLVAWNSLISGYAG-RGYLGKCFEVLSRMMRSEVGFRPNEVTFLSMISACVHGGNK 59

Query: 47  ----CI------------------LLN----SDDVVAAFDFFQRLPIKDTASWNTMISGF 80
               CI                  L+N    + D++++   F+ L +K+  SWNTMI   
Sbjct: 60  EEGVCIHGLVMKSGVLEEVKVVNALMNLYGKTGDLISSCKLFEDLSVKNLVSWNTMIVIH 119

Query: 81  VQKK---------NMAKARDL------FLAMPE------------------------KNS 101
           +Q           NM++   L      FLA+                           N+
Sbjct: 120 LQNGLAEEGLAYFNMSRWVGLKPDQATFLAVLRVCEDIGVVRLSQGIHGLIMFCGFNANT 179

Query: 102 VSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLR 161
              +A++  Y + G+L+ +  +F        +AWTAM++ Y   GY       D +K   
Sbjct: 180 CITTALLDLYAKLGRLEDSSTVFLEITSPDSMAWTAMLAAYATHGY-----GRDAIKHFE 234

Query: 162 MMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK----SPLCKDTTALTPLISMY 217
           +M+  G+ P+  + + +L  CSH   ++ G+   + + K     P     + +  L+   
Sbjct: 235 LMVHYGLSPDHVTFTHLLNACSHSGLVEEGRYYFETMSKRYRIEPRLDHYSCMVDLMG-- 292

Query: 218 CKCGDLEDACKLFLEI-QRKDVVTWNAMISG---YAQHGKGEKAL-RLFD 262
            + G L+DA  L  E+        W A++     Y     G KA  RLF+
Sbjct: 293 -RSGLLQDAYGLIKEMPMEPSSGVWGALLGACRVYKDTQLGTKAAKRLFE 341


>gi|449516914|ref|XP_004165491.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At5g52630-like [Cucumis
           sativus]
          Length = 598

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 211/535 (39%), Positives = 323/535 (60%), Gaps = 34/535 (6%)

Query: 28  ELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRL------PIKDTASWNTMISGFV 81
           ++FD+ P+    +++ ++S    N   ++A   FF+R+      P        T   GF+
Sbjct: 81  QVFDETPKKSSTTWSSVISAFAQNEAPLLA-LQFFRRMLNDGVRPDDHIYPSATKACGFL 139

Query: 82  QKKNMAKAR-----------DLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVK 130
           ++ ++ K+            D+F+          S+++  Y +CG++  A  LF   P +
Sbjct: 140 RRSDVGKSVHCLAVKTGYYCDVFVG---------SSLVDMYAKCGEIGDARHLFDEMPER 190

Query: 131 SVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQL 190
           +VV+W+ MI     +GY +     + L L +  +   +  N  + SSV+  CS  + L+L
Sbjct: 191 NVVSWSGMI-----YGYAQLDDGVEALTLFKQALIEDVDVNDFTFSSVIRVCSSSTFLEL 245

Query: 191 GKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQ 250
           GK +H L  K      +   + LIS+Y KCG +E A ++F EI  +++  WN+M+   AQ
Sbjct: 246 GKLIHGLCLKMSFDSSSFVGSALISLYSKCGVIEGAYQVFDEIPTRNLGLWNSMLIACAQ 305

Query: 251 HGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPD 310
           H   ++   LF++M + GMKP+ I F+++L AC+HAGLV+ G +YF S++ DYGI  + +
Sbjct: 306 HAHTQRVFGLFEEMGNVGMKPNFIXFLSVLYACSHAGLVEKGREYF-SLMRDYGIEPETE 364

Query: 311 HYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNL 370
           HY  +VDLLGRAGKL EAV +IK+MP +P  +++G LL+ CR+HK  ++A F A  +  +
Sbjct: 365 HYASLVDLLGRAGKLQEAVSVIKQMPMRPTESVWGALLTGCRIHKDTEMAAFVADRILEM 424

Query: 371 NPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDR 430
           + ++++G +V L+N YAA  ++++ AR+R  +++  V K  G SW+E G  VH F +GDR
Sbjct: 425 D-SSSSGLHVLLSNAYAAAGRYEEAARMRKMLRDRGVKKETGLSWVEEGNKVHTFTAGDR 483

Query: 431 VHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKV 490
            H + V I+EKL+ELE+ M+ AGYV D  F L AV  E K + + +HSE+LAIAFGLI  
Sbjct: 484 SHAKWVEIYEKLEELEEEMEKAGYVADTSFVLRAVDGEEKNETIRYHSERLAIAFGLITF 543

Query: 491 PLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           P G PIRV KNLRVCGDCH A K++S    R +IVRD  RFH F+DG CSCGDYW
Sbjct: 544 PPGRPIRVMKNLRVCGDCHAAIKFMSKCCGRVLIVRDNNRFHRFEDGKCSCGDYW 598



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 61/254 (24%), Positives = 125/254 (49%), Gaps = 17/254 (6%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTA----SWNTM 76
           G++ DA+ LFD++P+ +VVS++ M+       DD V A   F++  I+D      +++++
Sbjct: 175 GEIGDARHLFDEMPERNVVSWSGMIYG-YAQLDDGVEALTLFKQALIEDVDVNDFTFSSV 233

Query: 77  I-----SGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKS 131
           I     S F++   +     L ++  + +S   SA+IS Y +CG ++ A ++F   P ++
Sbjct: 234 IRVCSSSTFLELGKLIHGLCLKMSF-DSSSFVGSALISLYSKCGVIEGAYQVFDEIPTRN 292

Query: 132 VVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLG 191
           +  W +M+    +  + +  +      L   M  +G++PN     SVL  CSH   ++ G
Sbjct: 293 LGLWNSMLIACAQHAHTQRVFG-----LFEEMGNVGMKPNFIXFLSVLYACSHAGLVEKG 347

Query: 192 KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI-QRKDVVTWNAMISGYAQ 250
           ++   L+    +  +T     L+ +  + G L++A  +  ++  R     W A+++G   
Sbjct: 348 REYFSLMRDYGIEPETEHYASLVDLLGRAGKLQEAVSVIKQMPMRPTESVWGALLTGCRI 407

Query: 251 HGKGEKALRLFDKM 264
           H   E A  + D++
Sbjct: 408 HKDTEMAAFVADRI 421



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 82/172 (47%), Gaps = 13/172 (7%)

Query: 171 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 230
           N   + ++LL  +   SL+ G Q+H  + K  L         LI++Y K      + ++F
Sbjct: 24  NYRQICNLLLSFTRSRSLRQGLQLHAHILKFGLQTIPLVSHNLINLYSKTQLPLFSLQVF 83

Query: 231 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVD 290
            E  +K   TW+++IS +AQ+     AL+ F +M ++G++PD   + +   AC      D
Sbjct: 84  DETPKKSSTTWSSVISAFAQNEAPLLALQFFRRMLNDGVRPDDHIYPSATKACGFLRRSD 143

Query: 291 LGIQYFDSMVNDYGIAAKPDHY------TCMVDLLGRAGKLVEAVDLIKKMP 336
           +G          + +A K  +Y      + +VD+  + G++ +A  L  +MP
Sbjct: 144 VGKSV-------HCLAVKTGYYCDVFVGSSLVDMYAKCGEIGDARHLFDEMP 188


>gi|225427576|ref|XP_002268530.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Vitis vinifera]
          Length = 631

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 198/444 (44%), Positives = 281/444 (63%), Gaps = 6/444 (1%)

Query: 102 VSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLR 161
           V W+ MI GY+  G+L+ A  LF   P +SVV+W  MI+GY + G+ +     + +++ R
Sbjct: 194 VLWNVMIDGYVRIGELEVARNLFDEMPQRSVVSWNVMIAGYAQSGHFK-----EAVEVFR 248

Query: 162 MMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCG 221
            M    + PN  +L SVL   S L +L+LGK VH    ++ +  D    + LI MY KCG
Sbjct: 249 EMQMAEVPPNYVTLVSVLPAMSRLGALELGKWVHLYAVRNNIGVDDVLGSALIDMYAKCG 308

Query: 222 DLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLL 281
            +E A ++F  + +++VVTW+ +I+G A HG+ +  L  F+ M+  G+ P  +T++ LL 
Sbjct: 309 SIEKALQVFEGLPKRNVVTWSTIIAGLAMHGRAKDTLDHFEDMERAGVMPSDVTYIGLLS 368

Query: 282 ACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQP 341
           AC+HAGLV+ G  +FD MV   G+  + +HY CMVDLLGRAG L E+ +LI  MP KP  
Sbjct: 369 ACSHAGLVNEGRWFFDHMVRVSGLEPRIEHYGCMVDLLGRAGLLEESEELILNMPIKPDD 428

Query: 342 AIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLS 401
            I+  LL AC++H  +++ +  A +L  L P ++ G YV L+NIYA++  W+ VA++RL 
Sbjct: 429 VIWKALLGACKMHGNVEMGKRVAEHLMELAPHDS-GSYVALSNIYASLGNWEGVAKVRLM 487

Query: 402 MKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFA 461
           MKE +V K PG SWIE+  V+HEF   D  HP+   IH  L+E+ + + L GY P+    
Sbjct: 488 MKEMDVRKDPGCSWIELDGVIHEFLVEDDSHPKSKKIHSMLQEMSRNLILVGYRPNTTQV 547

Query: 462 LHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKR 521
           L  + EE KE  L +HSEK+AIAFGLI     TP+R+ KNLR+C DCH + K IS I KR
Sbjct: 548 LTNMDEEDKESSLNYHSEKIAIAFGLISTQPQTPLRITKNLRICEDCHSSIKLISKIYKR 607

Query: 522 EIIVRDTTRFHHFKDGTCSCGDYW 545
           +IIVRD  RFHHF +G+CSC DYW
Sbjct: 608 KIIVRDRKRFHHFVNGSCSCMDYW 631



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 70/309 (22%), Positives = 133/309 (43%), Gaps = 56/309 (18%)

Query: 117 LDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLS 176
           LD A ++F+     +  ++  +I    +     N   +  L  + M+    + PN  +  
Sbjct: 61  LDYARKIFRSMHRPNCFSYNTLIRALSE----SNDPCDALLVFIEMVEDCSVEPNCFTFP 116

Query: 177 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF------ 230
           SV   C     L+ G+QVH L  K  L  D   ++ ++ MY  CG +EDA +LF      
Sbjct: 117 SVFKACGRAERLREGRQVHGLAVKFGLDSDEFVVSNVVRMYLSCGVMEDAHRLFYRRVFV 176

Query: 231 --------------------------------LEIQR--------KDVVTWNAMISGYAQ 250
                                           LE+ R        + VV+WN MI+GYAQ
Sbjct: 177 DGCDGIRDKKRRVDGDVVLWNVMIDGYVRIGELEVARNLFDEMPQRSVVSWNVMIAGYAQ 236

Query: 251 HGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ-YFDSMVNDYGIAAKP 309
            G  ++A+ +F +M+   + P+ +T V++L A +  G ++LG   +  ++ N+ G+    
Sbjct: 237 SGHFKEAVEVFREMQMAEVPPNYVTLVSVLPAMSRLGALELGKWVHLYAVRNNIGVDDVL 296

Query: 310 DHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRL--DLAEFAAMNL 367
              + ++D+  + G + +A+ + + +P K     + T+++   +H R    L  F  M  
Sbjct: 297 G--SALIDMYAKCGSIEKALQVFEGLP-KRNVVTWSTIIAGLAMHGRAKDTLDHFEDMER 353

Query: 368 FNLNPANAA 376
             + P++  
Sbjct: 354 AGVMPSDVT 362



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 74/292 (25%), Positives = 135/292 (46%), Gaps = 34/292 (11%)

Query: 6   TVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRL 65
            V WN ++ G+ +  G+L+ A+ LFD++PQ  VVS+N+M++     S     A + F+ +
Sbjct: 193 VVLWNVMIDGYVRI-GELEVARNLFDEMPQRSVVSWNVMIAG-YAQSGHFKEAVEVFREM 250

Query: 66  PIKDTA-SWNTMISGFVQKKNMAK---ARDLFLAMPEKN----SVSWSAMISGYIECGQL 117
            + +   ++ T++S       +      + + L     N     V  SA+I  Y +CG +
Sbjct: 251 QMAEVPPNYVTLVSVLPAMSRLGALELGKWVHLYAVRNNIGVDDVLGSALIDMYAKCGSI 310

Query: 118 DKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSS 177
           +KA+++F+  P ++VV W+ +I+G    G      A+D L     M   G+ P+  +   
Sbjct: 311 EKALQVFEGLPKRNVVTWSTIIAGLAMHGR-----AKDTLDHFEDMERAGVMPSDVTYIG 365

Query: 178 VLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDL---------EDACK 228
           +L  CSH   +  G+     + +       + L P I  Y    DL          +   
Sbjct: 366 LLSACSHAGLVNEGRWFFDHMVR------VSGLEPRIEHYGCMVDLLGRAGLLEESEELI 419

Query: 229 LFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKP-DSITFVAL 279
           L + I+  DV+ W A++     HG  E   R+ + + +  + P DS ++VAL
Sbjct: 420 LNMPIKPDDVI-WKALLGACKMHGNVEMGKRVAEHLME--LAPHDSGSYVAL 468


>gi|115464255|ref|NP_001055727.1| Os05g0455900 [Oryza sativa Japonica Group]
 gi|53749358|gb|AAU90217.1| unknow protein [Oryza sativa Japonica Group]
 gi|113579278|dbj|BAF17641.1| Os05g0455900 [Oryza sativa Japonica Group]
 gi|222631826|gb|EEE63958.1| hypothetical protein OsJ_18783 [Oryza sativa Japonica Group]
          Length = 874

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 208/514 (40%), Positives = 297/514 (57%), Gaps = 42/514 (8%)

Query: 68  KDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMI--------------- 108
           ++  SW  +ISG +Q  ++  A  LF  M E     N  ++SAM+               
Sbjct: 367 RNVVSWTAIISGCIQNGDIPLAVVLFSRMREDRVMPNEFTYSAMLKASLSILPPQIHAQV 426

Query: 109 ----------------SGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSW 152
                           + Y + G  + A+ +FK+   K VVAW+AM+S + + G  E + 
Sbjct: 427 IKTNYQHIPFVGTALLASYSKFGSTEDALSIFKMIEQKDVVAWSAMLSCHAQAGDCEGA- 485

Query: 153 AEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSS-LQLGKQVHQLVFKSPLCKDTTALT 211
                 L   M   GI+PN  ++SSV+  C+  S+ +  G+Q H +  K          +
Sbjct: 486 ----TYLFNKMAIQGIKPNEFTISSVIDACACPSAGVDQGRQFHAISIKYRYHDAICVSS 541

Query: 212 PLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKP 271
            L+SMY + G+++ A  +F     +D+V+WN+MISGYAQHG   KA+  F +M+  G++ 
Sbjct: 542 ALVSMYSRKGNIDSAQIVFERQTDRDLVSWNSMISGYAQHGYSMKAIETFRQMEASGIQM 601

Query: 272 DSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDL 331
           D +TF+A+++ C H GLV  G QYFDSMV D+ I    +HY CMVDL  RAGKL E + L
Sbjct: 602 DGVTFLAVIMGCTHNGLVVEGQQYFDSMVRDHKINPTMEHYACMVDLYSRAGKLDETMSL 661

Query: 332 IKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKK 391
           I+ MPF     ++ TLL ACRVHK ++L +F+A  L +L P +++  YV L+NIYAA  K
Sbjct: 662 IRDMPFPAGAMVWRTLLGACRVHKNVELGKFSADKLLSLEPHDSS-TYVLLSNIYAAAGK 720

Query: 392 WDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKL 451
           W +   +R  M    V K  G SWI++   VH F + D+ HP    I++KLK +  R+K 
Sbjct: 721 WKERDEVRKLMDYRKVKKEAGCSWIQIKNKVHSFIAFDKSHPMSDQIYKKLKVIITRLKQ 780

Query: 452 AGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRA 511
            GY P+  F LH + E+ KE +L+ HSE+LA+AFGLI  P GTP+++ KNLRVCGDCH  
Sbjct: 781 DGYSPNTSFVLHDIAEDQKEAMLVAHSERLALAFGLIATPPGTPLQIVKNLRVCGDCHMV 840

Query: 512 TKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
            K +S IE REII+RD +RFHHF  G CSCGD+W
Sbjct: 841 MKMVSMIEDREIIMRDCSRFHHFNGGACSCGDFW 874



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 63/256 (24%), Positives = 123/256 (48%), Gaps = 6/256 (2%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI 164
           ++++  Y++CG + + +E+F+  P K+VV WT++++G             + + L   M 
Sbjct: 139 TSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWTSLLTGC-----AHAQMHSEVMALFFRMR 193

Query: 165 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 224
             GI PN  + +SVL   +   +L LG++VH    K            L++MY KCG +E
Sbjct: 194 AEGIWPNPFTFASVLSAVASQGALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVE 253

Query: 225 DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 284
           DA  +F  ++ +D+V+WN +++G   +    +AL+LF + +    K    T+  ++  C 
Sbjct: 254 DAKSVFNWMETRDMVSWNTLMAGLQLNECELEALQLFHESRATMGKMTQSTYATVIKLCA 313

Query: 285 HAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIF 344
           +   + L  Q   S V  +G     +  T + D   + G+L +A+++            +
Sbjct: 314 NLKQLALARQ-LHSCVLKHGFHLTGNVMTALADAYSKCGELADALNIFSMTTGSRNVVSW 372

Query: 345 GTLLSACRVHKRLDLA 360
             ++S C  +  + LA
Sbjct: 373 TAIISGCIQNGDIPLA 388



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 55/209 (26%), Positives = 108/209 (51%), Gaps = 7/209 (3%)

Query: 167 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCK-DTTALTPLISMYCKCGDLED 225
           G+  ++++LS VL  C  +    LG+Q+H L  K    + + +A T L+ MY KCG + +
Sbjct: 94  GVLVDSATLSCVLKACRSVPDRVLGEQLHCLCVKCGHDRGEVSAGTSLVDMYMKCGSVCE 153

Query: 226 ACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNH 285
             ++F  + +K+VVTW ++++G A      + + LF +M+ EG+ P+  TF ++L A   
Sbjct: 154 GIEVFEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVAS 213

Query: 286 AGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFG 345
            G +DLG Q   +    +G  +       ++++  + G + +A  +   M  +   + + 
Sbjct: 214 QGALDLG-QRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVS-WN 271

Query: 346 TLLSACRVHKRLDLAEFAAMNLFNLNPAN 374
           TL++      +L+  E  A+ LF+ + A 
Sbjct: 272 TLMAGL----QLNECELEALQLFHESRAT 296


>gi|414588833|tpg|DAA39404.1| TPA: hypothetical protein ZEAMMB73_882385 [Zea mays]
          Length = 668

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 214/540 (39%), Positives = 312/540 (57%), Gaps = 32/540 (5%)

Query: 25  DAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKK 84
           DA+  FD+IP P+ V    M S  + N + V      F+ +    +A       G V + 
Sbjct: 142 DARRAFDEIPTPNPVIVTAMASGCMRN-NLVYTTLSIFRSMVASGSA-------GVVDEA 193

Query: 85  NMAKARDLFLAMPEKNSVSW-----------------SAMISGYIECG--QLDKAVELFK 125
               A      +P++                      + +I  Y + G   L  A +LF 
Sbjct: 194 AALVALSASARVPDRGITGGIHALVSKIGLDGQTGVANTIIDAYAKGGGHDLGAARKLFD 253

Query: 126 VAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHL 185
           +   + VV+W  MI+ Y + G    +    GL    +++G  +R NA +LS+VLL C+H 
Sbjct: 254 MMD-RDVVSWNTMIALYAQNGLSTEAL---GLYSKMLIVGGDVRCNAVTLSAVLLACAHA 309

Query: 186 SSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMI 245
            ++Q GK++H  V +  L  +    T ++ MY KCG +E A K F +I+ K++++W+AMI
Sbjct: 310 GAIQTGKRIHNQVVRMGLEDNVYVGTSVVDMYSKCGKVEMAWKAFQKIKGKNILSWSAMI 369

Query: 246 SGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGI 305
           +GY  HG G++AL +F  M+  G+KP+ ITF+ +L AC+HAGL+  G  ++++M  ++GI
Sbjct: 370 AGYGMHGYGQEALHVFTDMRKSGLKPNYITFITVLAACSHAGLLSEGRYWYNTMKTEFGI 429

Query: 306 AAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAM 365
               +HY CMVDLLGRAG L EA  LIK+M  KP  A++G LLSACR++K ++LA+  A 
Sbjct: 430 EPGVEHYGCMVDLLGRAGCLDEAYGLIKEMKVKPDAALWGALLSACRIYKNVELAKICAE 489

Query: 366 NLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEF 425
            LF L+  N +G YV L+NIYA    W +V R+R+ +K   + K PGYS +E+    H F
Sbjct: 490 RLFELDATN-SGYYVLLSNIYAEAGMWKEVERMRVLVKTRGIEKPPGYSSVELKGKTHLF 548

Query: 426 RSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAF 485
             GD+ HP+   I+  L++L +R+  AGYVP+    LH +  E +E +L  HSEKLA+AF
Sbjct: 549 YVGDKSHPQYKEIYAYLEKLLERIHDAGYVPNTGSVLHDLDVEERESMLRIHSEKLAVAF 608

Query: 486 GLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
            L+    G+ I V KNLRVC DCH A K I+ +  REII+RD  RFHHFKDG CSCGDYW
Sbjct: 609 ALMNSVQGSVIHVIKNLRVCTDCHAAIKIITKLTGREIIIRDLKRFHHFKDGLCSCGDYW 668



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 63/256 (24%), Positives = 119/256 (46%), Gaps = 32/256 (12%)

Query: 10  NSVLAGFAKQRGK-LKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK 68
           N+++  +AK  G  L  A++LFD + + DVVS+N M++    N     A   + + L + 
Sbjct: 231 NTIIDAYAKGGGHDLGAARKLFDMMDR-DVVSWNTMIALYAQNGLSTEALGLYSKMLIVG 289

Query: 69  DTASWNTMI----------SGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLD 118
                N +           +G +Q       + + + + E N    ++++  Y +CG+++
Sbjct: 290 GDVRCNAVTLSAVLLACAHAGAIQTGKRIHNQVVRMGL-EDNVYVGTSVVDMYSKCGKVE 348

Query: 119 KAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSV 178
            A + F+    K++++W+AMI+GY   GY      ++ L +   M   G++PN  +  +V
Sbjct: 349 MAWKAFQKIKGKNILSWSAMIAGYGMHGY-----GQEALHVFTDMRKSGLKPNYITFITV 403

Query: 179 LLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMY-C------KCGDLEDACKLFL 231
           L  CSH   L  G+  +  +      K    + P +  Y C      + G L++A  L  
Sbjct: 404 LAACSHAGLLSEGRYWYNTM------KTEFGIEPGVEHYGCMVDLLGRAGCLDEAYGLIK 457

Query: 232 EIQRK-DVVTWNAMIS 246
           E++ K D   W A++S
Sbjct: 458 EMKVKPDAALWGALLS 473


>gi|297794613|ref|XP_002865191.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311026|gb|EFH41450.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 697

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 223/587 (37%), Positives = 324/587 (55%), Gaps = 54/587 (9%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  ++ V+W +++ G   + G +  A+ LF ++P  D+ ++N M+    L    V  A  
Sbjct: 123 MPERSVVSWTAMVNG-CFRFGMVDQAERLFCQMPVKDIAAWNAMVHG-YLQFGKVDDALK 180

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM----PEKNSVSWSAMISG------ 110
            F+++P K+  SW TMI G  Q +   +A +LF  M     +  S +++ +I+       
Sbjct: 181 LFKQMPRKNVISWTTMICGLDQNERSGEALNLFKNMLRCCIKSTSRTFTCVITACANAPA 240

Query: 111 -----------------------------YIECGQLDKAVELFKVAPVKSVVAWTAMISG 141
                                        Y  C + + + ++F     + V  WTA++SG
Sbjct: 241 FHMGTQVHGFIIKSGFLYEEYVTASLITLYANCKRTEDSRKVFGEMVHEKVAVWTALLSG 300

Query: 142 YMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKS 201
           Y       N   ED L +   MI   I PN S+ +S L  CS L +L  GK++H +  K 
Sbjct: 301 YSL-----NRKHEDALNVFSEMIRNSILPNQSTFASGLNSCSALGTLDWGKEIHGVAVKL 355

Query: 202 PLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLF 261
            L         L+ MY   G++ DA  +F+EI +K +V+WN++I G AQHG+G+ A  +F
Sbjct: 356 GLGTVAFVGNSLVVMYSDSGNVNDAVSVFIEIFKKSIVSWNSIIVGCAQHGRGKWAFVIF 415

Query: 262 DKMKDEGMKPDSITFVALLLACNHAGLVDLG---IQYFDSMVNDYGIAAKPDHYTCMVDL 318
            +M     +PD ITF  LL AC+H G +  G     Y  S +N   I  K  HYTCMVD+
Sbjct: 416 GQMIRLNKEPDEITFTGLLSACSHCGFLQKGRKLFYYISSGLNH--IDRKIQHYTCMVDI 473

Query: 319 LGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGC 378
           LGR G+L EA  LI+ M  KP   ++  LLSACR+H  +D  E AA  +FNL+  ++A  
Sbjct: 474 LGRCGELKEAEKLIESMVVKPNEMVWLALLSACRMHSDVDRGEKAAAAIFNLDSKSSAA- 532

Query: 379 YVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSI 438
           YV L+NIYA+  +W  V+++R+ MK+  ++K PG SW+ +    HEF SGDR  P  + I
Sbjct: 533 YVLLSNIYASAGRWSSVSKLRVKMKQKGIMKKPGSSWVVIRGKKHEFFSGDR--PHCLRI 590

Query: 439 HEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRV 498
            EKL+ L +++K  GYVPD   ALH V +E KE++L +HSE+LAIAFGLI    G+ + V
Sbjct: 591 FEKLEFLREKLKELGYVPDYRSALHDVEDEQKEEMLWYHSERLAIAFGLINTVEGSTVTV 650

Query: 499 FKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
            KNLRVC DCH   K IS +   +I++RD TRFHHFK+G CSCGDYW
Sbjct: 651 MKNLRVCEDCHTVIKLISRVVGCKIVLRDPTRFHHFKNGMCSCGDYW 697



 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 112/379 (29%), Positives = 189/379 (49%), Gaps = 31/379 (8%)

Query: 22  KLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFV 81
           +L +A+E+FD++P P V  Y  M+S     S+ +V A + F  +P++D  SWN+MISG V
Sbjct: 50  RLDEAREVFDQVPSPHVSLYTKMISG-YTRSNRLVDALNLFDEMPLRDVVSWNSMISGCV 108

Query: 82  QKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISG 141
           +  ++  A  +F  MPE++ VSW+AM++G    G +D+A  LF   PVK + AW AM+ G
Sbjct: 109 ECGDIDTAVKMFDEMPERSVVSWTAMVNGCFRFGMVDQAERLFCQMPVKDIAAWNAMVHG 168

Query: 142 YMKFGYVEN--------------SWAE------------DGLKLLRMMIGLGIRPNASSL 175
           Y++FG V++              SW              + L L + M+   I+  + + 
Sbjct: 169 YLQFGKVDDALKLFKQMPRKNVISWTTMICGLDQNERSGEALNLFKNMLRCCIKSTSRTF 228

Query: 176 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR 235
           + V+  C++  +  +G QVH  + KS    +      LI++Y  C   ED+ K+F E+  
Sbjct: 229 TCVITACANAPAFHMGTQVHGFIIKSGFLYEEYVTASLITLYANCKRTEDSRKVFGEMVH 288

Query: 236 KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQY 295
           + V  W A++SGY+ + K E AL +F +M    + P+  TF + L +C+  G +D G + 
Sbjct: 289 EKVAVWTALLSGYSLNRKHEDALNVFSEMIRNSILPNQSTFASGLNSCSALGTLDWGKEI 348

Query: 296 FDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHK 355
               V   G+         +V +   +G + +AV +  ++ FK     + +++  C  H 
Sbjct: 349 HGVAVK-LGLGTVAFVGNSLVVMYSDSGNVNDAVSVFIEI-FKKSIVSWNSIIVGCAQHG 406

Query: 356 RLDLAE--FAAMNLFNLNP 372
           R   A   F  M   N  P
Sbjct: 407 RGKWAFVIFGQMIRLNKEP 425


>gi|115467246|ref|NP_001057222.1| Os06g0231400 [Oryza sativa Japonica Group]
 gi|51535413|dbj|BAD37283.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113595262|dbj|BAF19136.1| Os06g0231400 [Oryza sativa Japonica Group]
 gi|125596589|gb|EAZ36369.1| hypothetical protein OsJ_20697 [Oryza sativa Japonica Group]
          Length = 602

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 194/444 (43%), Positives = 273/444 (61%), Gaps = 6/444 (1%)

Query: 102 VSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLR 161
           VSW+ M+ G    G +D A E+F   P +++V+W +MISGY+K          D L++  
Sbjct: 165 VSWTTMVGGLCRLGLVDDAREVFDAMPARNLVSWNSMISGYVKADRFL-----DALEVFD 219

Query: 162 MMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCG 221
            M  LG+  N    +S L+ C+   +L  G+++++ V +S +  D    T ++ MYCKCG
Sbjct: 220 EMRALGVEGNGFVATSALVACTGAGALGRGREIYRWVEQSGIEVDAKLATAVVDMYCKCG 279

Query: 222 DLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLL 281
            +++A  +F  +  + + TWN MI G+A HG+ + AL LF +M+  G+ PD +T + +L 
Sbjct: 280 CVDEAWGVFDSLPARGLTTWNCMIGGFAVHGRCDDALELFHQMEAAGVAPDDVTLLNVLT 339

Query: 282 ACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQP 341
           AC HAG V  G +Y + +V+ +GI  K +HY CMVDL GRAG+L EA  +I +MP  P  
Sbjct: 340 ACAHAGEVSEGRRYLNHIVSRHGIEPKGEHYGCMVDLFGRAGQLDEAKKVIDEMPMDPDL 399

Query: 342 AIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLS 401
           A+ G LL AC++H  +DL E     + +L+P N+ G YV LAN+ A   +WD+V ++R  
Sbjct: 400 AVLGALLGACKIHGDVDLGEAIGWRVIDLDPDNS-GRYVLLANLLAGAGRWDEVGKVRRL 458

Query: 402 MKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFA 461
           M E NV K  G S IEV     EFR G+  HP+   I+    ++  R++  GYVPD   A
Sbjct: 459 MDERNVSKEAGRSVIEVDGEACEFRCGNLRHPQAREIYAMAVDMVSRIRAEGYVPDTGEA 518

Query: 462 LHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKR 521
           LH V EE KE  LL HSEKLAIAFGL++      +R+ KNLRVC DCH ATKY+S +  R
Sbjct: 519 LHDVAEEDKEAALLCHSEKLAIAFGLLRARPRETLRITKNLRVCRDCHEATKYVSRVFGR 578

Query: 522 EIIVRDTTRFHHFKDGTCSCGDYW 545
           EI+VRD +RFHHFKDG CSC DYW
Sbjct: 579 EIVVRDRSRFHHFKDGMCSCKDYW 602



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 78/331 (23%), Positives = 144/331 (43%), Gaps = 54/331 (16%)

Query: 7   VNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSD--DVVAAFDFFQR 64
           V+W +++ G  +  G + DA+E+FD +P  ++VS+N M+S  +      D +  FD  + 
Sbjct: 165 VSWTTMVGGLCRL-GLVDDAREVFDAMPARNLVSWNSMISGYVKADRFLDALEVFDEMRA 223

Query: 65  LPIKDTASWNT-MISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMISGYIECGQLDK 119
           L ++      T  +        + + R+++  +     E ++   +A++  Y +CG +D+
Sbjct: 224 LGVEGNGFVATSALVACTGAGALGRGREIYRWVEQSGIEVDAKLATAVVDMYCKCGCVDE 283

Query: 120 AVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVL 179
           A  +F   P + +  W  MI G+   G       +D L+L   M   G+ P+  +L +VL
Sbjct: 284 AWGVFDSLPARGLTTWNCMIGGFAVHGRC-----DDALELFHQMEAAGVAPDDVTLLNVL 338

Query: 180 LGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVV 239
             C+H   +  G++                L  ++S +               I+ K   
Sbjct: 339 TACAHAGEVSEGRRY---------------LNHIVSRH--------------GIEPKG-E 368

Query: 240 TWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSM 299
            +  M+  + + G+ ++A ++ D+M    M PD     ALL AC   G VDLG       
Sbjct: 369 HYGCMVDLFGRAGQLDEAKKVIDEMP---MDPDLAVLGALLGACKIHGDVDLG-----EA 420

Query: 300 VNDYGIAAKPDH---YTCMVDLLGRAGKLVE 327
           +    I   PD+   Y  + +LL  AG+  E
Sbjct: 421 IGWRVIDLDPDNSGRYVLLANLLAGAGRWDE 451


>gi|357519251|ref|XP_003629914.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523936|gb|AET04390.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 727

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 215/590 (36%), Positives = 320/590 (54%), Gaps = 54/590 (9%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIP--QPDVVSYNIMLSCILLNSDDVVAA 58
           M  + +++W +++ GF    G++ +A+  F+ +P    DV ++N M++    N+  V  A
Sbjct: 147 MPQRNSISWTTIIHGFLST-GRVNEAERFFNAMPYVDKDVATWNAMVNG-YCNNGRVNDA 204

Query: 59  FDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSA------------ 106
              F ++P +D  SW ++I G  +     +A   F  M   + V  S+            
Sbjct: 205 LRLFCQMPSRDVISWTSIIVGLDRNGKSYQALFFFKNMVGFSGVGISSTTLVCGLSAAAK 264

Query: 107 ------------------------------MISGYIECGQLDKAVELFKVAPVKSVVAWT 136
                                         +++ Y  C ++  A ++F     K+VV WT
Sbjct: 265 ILDFYAGIQIHCCMFKFGFCCGLDEFVSASLVTFYASCKRMGDACKVFGETVCKNVVVWT 324

Query: 137 AMISGY-MKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVH 195
           A+++G  +   +VE       L++   M+   + PN SS +S L  C  L  L+ G+ +H
Sbjct: 325 ALLTGCGLNDKHVE------ALEVFSEMMRFNVVPNESSFTSALNSCVGLEDLEKGRVIH 378

Query: 196 QLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGE 255
               K  L         L+ MY KCG + DA  +F  I  K+VV+WN++I G AQHG G 
Sbjct: 379 AAGIKMGLENAVYTGNSLVVMYSKCGFIGDALCVFKGICEKNVVSWNSVIVGCAQHGCGT 438

Query: 256 KALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCM 315
            AL LF +M  EG++ D IT   LL AC+ +G++     +F        +    +HY CM
Sbjct: 439 WALVLFKEMLREGVESDEITLTGLLSACSRSGMLQKARCFFGYFARKRSMKLTVEHYACM 498

Query: 316 VDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANA 375
           VD+LGR G++ EA  L   MP +    ++  LLSACRVH  LD+AE AA  +F + P + 
Sbjct: 499 VDVLGRCGEVEEAEALATSMPVEANSMVWLVLLSACRVHSSLDVAERAAKRIFEMEP-DC 557

Query: 376 AGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPEL 435
           +  YV L+N+YA+ ++W +VARIR+ MK N +VK PG SWI +  + HEF S DR HP  
Sbjct: 558 SAAYVLLSNLYASSRRWLEVARIRMKMKHNGIVKQPGSSWITLKGMRHEFLSADRSHPLT 617

Query: 436 VSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTP 495
             I+EKL  L  +++  GY+PD +FALH V  E  E++L +HSE+LAIAFGL+    G+ 
Sbjct: 618 EEIYEKLVWLGVKLRELGYIPDQQFALHDVEIEQNEEMLSYHSERLAIAFGLLSTVEGST 677

Query: 496 IRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           I + KNLRVCGDCH A   ++ I  REI+VRD++RFHHFK+G CSCGDYW
Sbjct: 678 ITIMKNLRVCGDCHTAITLMAKIVNREIVVRDSSRFHHFKNGICSCGDYW 727



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 89/303 (29%), Positives = 145/303 (47%), Gaps = 36/303 (11%)

Query: 22  KLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP--IKDTASWNTMISG 79
           KL  A+ +F+KIP P V  Y  +L     N +++  A + F ++P   KDT SWN++I  
Sbjct: 72  KLDSARAVFNKIPSPHVSLYTKLLLAYAHN-NNLHEAINLFNQIPSNTKDTISWNSVIKA 130

Query: 80  FVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPV--KSVVAWTA 137
            +   +   A  LF  MP++NS+SW+ +I G++  G++++A   F   P   K V  W A
Sbjct: 131 SIICNDFVTAVKLFDEMPQRNSISWTTIIHGFLSTGRVNEAERFFNAMPYVDKDVATWNA 190

Query: 138 MISGYMKFGYVEN--------------SWAE------------DGLKLLRMMIGL-GIRP 170
           M++GY   G V +              SW                L   + M+G  G+  
Sbjct: 191 MVNGYCNNGRVNDALRLFCQMPSRDVISWTSIIVGLDRNGKSYQALFFFKNMVGFSGVGI 250

Query: 171 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLC--KDTTALTPLISMYCKCGDLEDACK 228
           ++++L   L   + +     G Q+H  +FK   C   D      L++ Y  C  + DACK
Sbjct: 251 SSTTLVCGLSAAAKILDFYAGIQIHCCMFKFGFCCGLDEFVSASLVTFYASCKRMGDACK 310

Query: 229 LFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGL 288
           +F E   K+VV W A+++G   + K  +AL +F +M    + P+  +F + L +C   GL
Sbjct: 311 VFGETVCKNVVVWTALLTGCGLNDKHVEALEVFSEMMRFNVVPNESSFTSALNSC--VGL 368

Query: 289 VDL 291
            DL
Sbjct: 369 EDL 371


>gi|356565095|ref|XP_003550780.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Glycine max]
          Length = 640

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 196/494 (39%), Positives = 296/494 (59%), Gaps = 8/494 (1%)

Query: 54  DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE 113
           D  +A   F  +   +  +WN +++   +  ++  A+D+F  MP +N  SW+ M++GY +
Sbjct: 153 DSGSARRVFDEMSEPNVVTWNAVLTAAFRCGDVEGAQDVFGCMPVRNLTSWNGMLAGYAK 212

Query: 114 CGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNAS 173
            G+L  A  +F   P++  V+W+ MI      G+  N   ++     R ++   IR N  
Sbjct: 213 AGELGLARRVFYEMPLRDEVSWSTMI-----VGFAHNGCFDEAFGFFRELLREEIRTNEV 267

Query: 174 SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI 233
           SL+ VL  C+   + + GK +H  V K+      +    LI  Y KCG++  A  +F  +
Sbjct: 268 SLTGVLSACAQAGAFEFGKILHGFVEKAGFLYVGSVNNALIDTYSKCGNVAMARLVFQNM 327

Query: 234 Q-RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 292
              + +V+W ++I+G A HG GE+A++LF +M++ G++PD ITF++LL AC+H+GLV+ G
Sbjct: 328 PVARSIVSWTSIIAGLAMHGCGEEAIQLFHEMEESGVRPDGITFISLLYACSHSGLVEEG 387

Query: 293 IQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACR 352
              F  M N YGI    +HY CMVDL GRA +L +A + I +MP  P   I+ TLL AC 
Sbjct: 388 CGLFSKMKNLYGIEPAIEHYGCMVDLYGRAARLQKAYEFICEMPVSPNAIIWRTLLGACS 447

Query: 353 VHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPG 412
           +H  +++AE     L  ++P N +G +V L+N+YA   KW DV+ IR +M E+++ K PG
Sbjct: 448 IHGNIEMAELVKARLAEMDPDN-SGDHVLLSNVYAVAGKWKDVSSIRRTMTEHSMKKTPG 506

Query: 413 YSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKL-AGYVPDLEFALHAVGEEVKE 471
           +S IE+  V++ F +G++ +      HEKL+E+  R++  AGY P L   LH + EE KE
Sbjct: 507 WSMIEIDKVIYGFVAGEKPNEVTEEAHEKLREIMLRLRTEAGYAPQLRSVLHDIEEEEKE 566

Query: 472 QLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRF 531
             +  HSEKLA AFG+ K+P G  +R+ KNLRVCGDCH   K IS + + EIIVRD +RF
Sbjct: 567 DSVSKHSEKLAAAFGIAKLPKGRILRIVKNLRVCGDCHTVMKLISKVYQVEIIVRDRSRF 626

Query: 532 HHFKDGTCSCGDYW 545
           H FKDG CSC DYW
Sbjct: 627 HSFKDGFCSCRDYW 640



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 72/289 (24%), Positives = 136/289 (47%), Gaps = 30/289 (10%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNS--DDVVAA 58
           M V+   +WN +LAG+AK  G+L  A+ +F ++P  D VS++ M+     N   D+   A
Sbjct: 195 MPVRNLTSWNGMLAGYAKA-GELGLARRVFYEMPLRDEVSWSTMIVGFAHNGCFDE---A 250

Query: 59  FDFFQRLPIKDTASWNTMISGFVQKKNMAKARD---LFLAMPEKNSVSW-----SAMISG 110
           F FF+ L  ++  +    ++G +     A A +   +     EK    +     +A+I  
Sbjct: 251 FGFFRELLREEIRTNEVSLTGVLSACAQAGAFEFGKILHGFVEKAGFLYVGSVNNALIDT 310

Query: 111 YIECGQLDKAVELFKVAPV-KSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIR 169
           Y +CG +  A  +F+  PV +S+V+WT++I+G    G       E+ ++L   M   G+R
Sbjct: 311 YSKCGNVAMARLVFQNMPVARSIVSWTSIIAGLAMHG-----CGEEAIQLFHEMEESGVR 365

Query: 170 PNASSLSSVLLGCSHLSSLQLG----KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLED 225
           P+  +  S+L  CSH   ++ G     ++  L    P  +       ++ +Y +   L+ 
Sbjct: 366 PDGITFISLLYACSHSGLVEEGCGLFSKMKNLYGIEPAIEHYGC---MVDLYGRAARLQK 422

Query: 226 ACKLFLEIQ-RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDS 273
           A +   E+    + + W  ++   + HG  E A  +  ++ +  M PD+
Sbjct: 423 AYEFICEMPVSPNAIIWRTLLGACSIHGNIEMAELVKARLAE--MDPDN 469



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/166 (23%), Positives = 70/166 (42%), Gaps = 35/166 (21%)

Query: 168 IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC 227
           + P++ + +  L   ++   L+ G Q+H   F+          T LISMY +CGD   A 
Sbjct: 99  LSPDSFTFAFALKAVANSRHLRPGIQLHSQAFRHGFDAHIFVGTTLISMYAECGDSGSAR 158

Query: 228 KLFLEIQRKDVVTWNA-------------------------------MISGYAQHGKGEK 256
           ++F E+   +VVTWNA                               M++GYA+ G+   
Sbjct: 159 RVFDEMSEPNVVTWNAVLTAAFRCGDVEGAQDVFGCMPVRNLTSWNGMLAGYAKAGELGL 218

Query: 257 ALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVND 302
           A R+F +M       D +++  +++   H G  D    +F  ++ +
Sbjct: 219 ARRVFYEMPLR----DEVSWSTMIVGFAHNGCFDEAFGFFRELLRE 260


>gi|297848728|ref|XP_002892245.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338087|gb|EFH68504.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 664

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 194/492 (39%), Positives = 300/492 (60%), Gaps = 11/492 (2%)

Query: 58  AFDFFQRLP--IKDTAS--WNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE 113
           AF  F+  P  IK  +   WN +++G+ + K+M  A  LF +MPE+NS SWS +I GY++
Sbjct: 180 AFQVFEETPDRIKKESILLWNVLVNGYCRAKDMQMATTLFRSMPERNSGSWSTLIKGYVD 239

Query: 114 CGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNAS 173
            G+L++A +LF++ P K+VV+WT +I+G+ + G  E +     +     M+  G++PN  
Sbjct: 240 NGELNRAKQLFELMPEKNVVSWTTLINGFSQTGDYETA-----ISTYFEMLEKGLKPNEY 294

Query: 174 SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI 233
           ++++VL  CS   +L  G ++H  +  + +  D    T L+ MY KCG+++ A  +F  +
Sbjct: 295 TVAAVLSACSKSGALGSGIRIHGYILDNGIKLDRAIGTSLLDMYAKCGEVDCAATVFSNM 354

Query: 234 QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGI 293
             KD+++W AMI G+A HG+  +A++ F +M   G KPD + F+A+L AC ++G VDLG+
Sbjct: 355 NHKDILSWTAMIQGWAVHGRFHQAIQCFRQMMYSGEKPDEVVFLAVLTACLNSGEVDLGL 414

Query: 294 QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRV 353
            +FDSM  DY I     HY  +VDLLGRAGKL EA +L++ MP  P    +  L  AC+ 
Sbjct: 415 NFFDSMRLDYAIEPTLKHYVLVVDLLGRAGKLDEAHELVEYMPINPDLTTWAALYRACKA 474

Query: 354 HKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGY 413
           HK  +  +    NL  L+P    G Y+ L   +AA  K+ DV + RLS+++    +  G 
Sbjct: 475 HKS-NRTDIVLQNLLELDP-ELRGSYIFLDKTHAAKGKYQDVEKRRLSLQKKVKERSMGC 532

Query: 414 SWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQL 473
           S+IE+   +++F + D  H +   I  KL+ +       GY+P  ++++H + EE KE +
Sbjct: 533 SYIELDCQLNKFAADDYTHKQAQEIRLKLEGIISLAIERGYIPGADWSIHDIEEEEKESV 592

Query: 474 LLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHH 533
              HSEKLA+  GL++   GT IR+ KNLR+CGDCH   KY+S I +R I++RD  +FHH
Sbjct: 593 TGIHSEKLALTLGLLRTAPGTTIRIIKNLRICGDCHSLMKYVSKISQRGILLRDARQFHH 652

Query: 534 FKDGTCSCGDYW 545
           FKDG+CSCGDYW
Sbjct: 653 FKDGSCSCGDYW 664



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 59/264 (22%), Positives = 117/264 (44%), Gaps = 25/264 (9%)

Query: 99  KNSVSWSAMISGYIECGQL----DKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAE 154
           +  V  S + +  + C  L    D ++ +F+ +  ++   + A+I G       EN+  E
Sbjct: 54  RRGVLSSRVAAQLVSCSSLLKSPDYSLSIFRNSEERNPFVFNALIRGL-----TENARFE 108

Query: 155 DGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLI 214
             ++   +M+ LG++P+  +   VL   S L    LG+ +H    K+ +  D+     L+
Sbjct: 109 CSVRHFILMLTLGVKPDRLTFPFVLKSNSKLGFRWLGRALHAATLKNFVDCDSFVRVSLV 168

Query: 215 SMYCKCGDLEDACKLFLE----IQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMK 270
            MY K G L  A ++F E    I+++ ++ WN +++GY +    + A  LF  M +    
Sbjct: 169 DMYAKTGQLNHAFQVFEETPDRIKKESILLWNVLVNGYCRAKDMQMATTLFRSMPER--- 225

Query: 271 PDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVD 330
            +S ++  L+      G ++   Q F+ M     ++     +T +++   + G    A+ 
Sbjct: 226 -NSGSWSTLIKGYVDNGELNRAKQLFELMPEKNVVS-----WTTLINGFSQTGDYETAIS 279

Query: 331 LIKKM---PFKPQPAIFGTLLSAC 351
              +M     KP       +LSAC
Sbjct: 280 TYFEMLEKGLKPNEYTVAAVLSAC 303


>gi|359473281|ref|XP_003631282.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g40405-like [Vitis vinifera]
          Length = 615

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 199/454 (43%), Positives = 275/454 (60%), Gaps = 6/454 (1%)

Query: 92  LFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENS 151
           +F ++ E + V  +AM+S   + G +  A +LF     K  +AW AMISGY++ G     
Sbjct: 168 VFSSICEPDLVCQTAMVSACAKMGDVGFARKLFDKMSHKDPIAWNAMISGYVQCGQ---- 223

Query: 152 WAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALT 211
            + + L L  +M   G++ N  S+ SVL  CSHL +L  G+  H  + ++ L    T  T
Sbjct: 224 -SREALSLFNLMQREGVKVNEVSMVSVLSACSHLGALDQGRWAHAYIERNKLRMTLTLGT 282

Query: 212 PLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKP 271
            LI MY KCG++  A ++F  ++ K+V TW++ I G A +G GEK L LF  MK + ++P
Sbjct: 283 ALIDMYAKCGNMNKAMEVFWGMKEKNVYTWSSAIGGLAMNGAGEKCLELFSLMKQDSVQP 342

Query: 272 DSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDL 331
           + ITFV++L  C+  GLV+ G ++F+SM   YGI  + +HY CMVDL GRAG L EA++ 
Sbjct: 343 NEITFVSVLRGCSVVGLVEEGRKHFESMSKVYGIEPRLEHYGCMVDLYGRAGHLDEALNF 402

Query: 332 IKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKK 391
           I  MP +P    +G LL+AC++++ +++ E A+  +  L   N  G YV L+NIYA  K 
Sbjct: 403 INSMPVRPHVGAWGALLNACKIYRNMEMGELASRKIVELEAKN-HGAYVLLSNIYADSKD 461

Query: 392 WDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKL 451
           WD V+ +R +M    V K PG S IEVG  VHEF  GD+ HP    I   L E+ +R+KL
Sbjct: 462 WDRVSNVRQTMNVKGVRKQPGCSVIEVGGEVHEFFVGDKSHPRYAEIQVMLGEISRRLKL 521

Query: 452 AGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRA 511
           +GYV +       + EE KE  L  HSEK+AIAFGLI +    PIR+ KNLRVC DCH A
Sbjct: 522 SGYVANTNPVFFDIEEEEKEDALCMHSEKIAIAFGLISLSPDVPIRIVKNLRVCWDCHDA 581

Query: 512 TKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           TK IS    REI+VRD  RFHHF+DG CSC  YW
Sbjct: 582 TKMISKAFNREIVVRDRNRFHHFRDGECSCKGYW 615



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 82/326 (25%), Positives = 132/326 (40%), Gaps = 74/326 (22%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLS-CILLNSDDVVAAFDFFQRLPIKDTASWNTMISG 79
           G L     +F  I +PD+V    M+S C  +   DV  A   F ++  KD  +WN MISG
Sbjct: 160 GGLDACHRVFSSICEPDLVCQTAMVSACAKMG--DVGFARKLFDKMSHKDPIAWNAMISG 217

Query: 80  FVQKKNMAKARDLFLAMPEK----NSVS------------------W------------- 104
           +VQ     +A  LF  M  +    N VS                  W             
Sbjct: 218 YVQCGQSREALSLFNLMQREGVKVNEVSMVSVLSACSHLGALDQGRWAHAYIERNKLRMT 277

Query: 105 ----SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLL 160
               +A+I  Y +CG ++KA+E+F     K+V  W++ I      G   N   E  L+L 
Sbjct: 278 LTLGTALIDMYAKCGNMNKAMEVFWGMKEKNVYTWSSAIG-----GLAMNGAGEKCLELF 332

Query: 161 RMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTP-------L 213
            +M    ++PN  +  SVL GCS +  ++ G++  + + K         + P       +
Sbjct: 333 SLMKQDSVQPNEITFVSVLRGCSVVGLVEEGRKHFESMSK------VYGIEPRLEHYGCM 386

Query: 214 ISMYCKCGDLEDACKLFLEIQ-RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPD 272
           + +Y + G L++A      +  R  V  W A+++          A +++  M+   M   
Sbjct: 387 VDLYGRAGHLDEALNFINSMPVRPHVGAWGALLN----------ACKIYRNME---MGEL 433

Query: 273 SITFVALLLACNHAGLVDLGIQYFDS 298
           +   +  L A NH   V L   Y DS
Sbjct: 434 ASRKIVELEAKNHGAYVLLSNIYADS 459



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 53/201 (26%), Positives = 91/201 (45%), Gaps = 34/201 (16%)

Query: 170 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC-- 227
           P+  + + ++   + L +   G  VH    K     D    + LI MY + G L DAC  
Sbjct: 109 PDNYTFTFLVRTSAQLLAHGTGSSVHGAAVKYGFEYDPHVQSGLIYMYAELGGL-DACHR 167

Query: 228 ------------------------------KLFLEIQRKDVVTWNAMISGYAQHGKGEKA 257
                                         KLF ++  KD + WNAMISGY Q G+  +A
Sbjct: 168 VFSSICEPDLVCQTAMVSACAKMGDVGFARKLFDKMSHKDPIAWNAMISGYVQCGQSREA 227

Query: 258 LRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVD 317
           L LF+ M+ EG+K + ++ V++L AC+H G +D G ++  + +    +       T ++D
Sbjct: 228 LSLFNLMQREGVKVNEVSMVSVLSACSHLGALDQG-RWAHAYIERNKLRMTLTLGTALID 286

Query: 318 LLGRAGKLVEAVDLIKKMPFK 338
           +  + G + +A+++   M  K
Sbjct: 287 MYAKCGNMNKAMEVFWGMKEK 307


>gi|115469684|ref|NP_001058441.1| Os06g0694300 [Oryza sativa Japonica Group]
 gi|53791823|dbj|BAD53889.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|53792844|dbj|BAD53877.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|113596481|dbj|BAF20355.1| Os06g0694300 [Oryza sativa Japonica Group]
 gi|125598347|gb|EAZ38127.1| hypothetical protein OsJ_22476 [Oryza sativa Japonica Group]
          Length = 648

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 190/474 (40%), Positives = 295/474 (62%), Gaps = 8/474 (1%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVV 133
           N++I  +V   ++  AR +F  M EK+ +SW++++  Y   G +  A E+F   PVK +V
Sbjct: 181 NSLIGAYVACGDVGAARKVFDEMVEKDVISWTSIVVAYTRSGDMRSAEEVFGRCPVKDMV 240

Query: 134 AWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ 193
           AWTAM++GY      +N+     L++   M  LG+  +  SL+  +  C+ L +L+    
Sbjct: 241 AWTAMVTGY-----AQNAMPVKALEVFDRMAELGMVIDEVSLTGAISACAQLGALRRAAW 295

Query: 194 VHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGK 253
           V ++  ++    +    + L+ MY KCG +++A K+F  +Q K+V T+++MI+G A HG+
Sbjct: 296 VQEIAERTGFGNNVVVGSGLVDMYAKCGLIDEASKVFYGMQEKNVYTYSSMIAGLASHGR 355

Query: 254 GEKALRLFDKMKDEG-MKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY 312
             +A+ LF +M +   ++P+ +TF+ +L AC+HAG+V  G  YF  M + YGI    DHY
Sbjct: 356 ASEAIALFKEMVNRANVEPNHVTFIGVLTACSHAGMVGEGRYYFAQMKDKYGIMPSADHY 415

Query: 313 TCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNP 372
            CMVDLLGRAG + EA+DL++ M   P   ++G LL ACR+H + ++A+  A +LF L P
Sbjct: 416 ACMVDLLGRAGLVDEALDLVRSMSVTPHGGVWGALLGACRIHGKSEIAKVVAEHLFKLEP 475

Query: 373 ANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIE-VGTVVHEFRSGDRV 431
             + G YV L+NI A+  KW++V+++R+ M++  + K P  S  E    +VH+F +GD  
Sbjct: 476 -ESIGNYVLLSNILASAGKWEEVSKVRILMRKQRLKKDPAVSLFEGRDGLVHQFFAGDNA 534

Query: 432 HPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVP 491
           HP    I + L EL  ++KL GYVP L   ++ V +E KE+LL+ HSEKLA++FGL+ + 
Sbjct: 535 HPRTHEIKKALLELVAKLKLEGYVPILSSIVYDVNDEEKERLLMGHSEKLALSFGLLTLG 594

Query: 492 LGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
            G  IR+ KNLR+C DCH   + +S +E  EIIVRD  RFHHFK+G CSCG +W
Sbjct: 595 SGCTIRIIKNLRICDDCHLFMQLVSRVESVEIIVRDNMRFHHFKNGECSCGGFW 648



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 73/308 (23%), Positives = 126/308 (40%), Gaps = 62/308 (20%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G +  A+++FD++ + DV+S+  ++      S D+ +A + F R P+KD  +W  M++G+
Sbjct: 191 GDVGAARKVFDEMVEKDVISWTSIV-VAYTRSGDMRSAEEVFGRCPVKDMVAWTAMVTGY 249

Query: 81  VQKKNMAKARDLFLAMPE---------------------------------------KNS 101
            Q     KA ++F  M E                                        N 
Sbjct: 250 AQNAMPVKALEVFDRMAELGMVIDEVSLTGAISACAQLGALRRAAWVQEIAERTGFGNNV 309

Query: 102 VSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLR 161
           V  S ++  Y +CG +D+A ++F     K+V  +++MI+G    G      A + + L +
Sbjct: 310 VVGSGLVDMYAKCGLIDEASKVFYGMQEKNVYTYSSMIAGLASHGR-----ASEAIALFK 364

Query: 162 MMIG-LGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKC 220
            M+    + PN  +   VL  CSH   +  G+      +     KD   + P    Y   
Sbjct: 365 EMVNRANVEPNHVTFIGVLTACSHAGMVGEGR------YYFAQMKDKYGIMPSADHYACM 418

Query: 221 GDLEDACKLF---LEIQRKDVVT-----WNAMISGYAQHGKGEKALRLFDKMKDEGMKPD 272
            DL     L    L++ R   VT     W A++     HGK E A  + + +    ++P+
Sbjct: 419 VDLLGRAGLVDEALDLVRSMSVTPHGGVWGALLGACRIHGKSEIAKVVAEHLFK--LEPE 476

Query: 273 SITFVALL 280
           SI    LL
Sbjct: 477 SIGNYVLL 484


>gi|359486639|ref|XP_002284011.2| PREDICTED: pentatricopeptide repeat-containing protein At2g39620-like
            [Vitis vinifera]
          Length = 1005

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 207/530 (39%), Positives = 288/530 (54%), Gaps = 46/530 (8%)

Query: 56   VAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP------------------ 97
             AA   F R+  +D  +WN++I+G+ Q  +   A D+F  +                   
Sbjct: 482  TAALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPAC 541

Query: 98   ---------------------EKNSVSWSAMISGYIECGQLDKAVELF-KVAPVKSVVAW 135
                                 E +    +A+I  Y +CG L  A  LF K    K  V W
Sbjct: 542  ALLNDLDQGTCIHGLIVKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTW 601

Query: 136  TAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVH 195
              +I+ YM+ G+     A++ +     M      PN+ +  SVL   ++L++ + G   H
Sbjct: 602  NVIIAAYMQNGH-----AKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFH 656

Query: 196  QLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGE 255
              + +     +T     LI MY KCG L+ + KLF E+  KD V+WNAM+SGYA HG G+
Sbjct: 657  ACIIQMGFLSNTLVGNSLIDMYAKCGQLDYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGD 716

Query: 256  KALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCM 315
            +A+ LF  M++  ++ DS++FV++L AC HAGLV+ G + F SM + Y I    +HY CM
Sbjct: 717  RAIALFSLMQESQVQIDSVSFVSVLSACRHAGLVEEGRKIFHSMSDKYHIKPDLEHYACM 776

Query: 316  VDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANA 375
            VDLLGRAG   E +  IK MP +P   ++G LL +CR+H  + L E A  +L  L P N 
Sbjct: 777  VDLLGRAGLFDETLGFIKVMPVEPDAGVWGALLGSCRMHSNVKLGEVALDHLVKLEPRNP 836

Query: 376  AGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPEL 435
            A  +V L++IYA   +W D  + R  M +  + K PG SW+E+   VH FR GD+ HP+L
Sbjct: 837  AH-FVVLSSIYAQSGRWADAGKARSKMNDLGLKKTPGCSWVELKNKVHAFRVGDKSHPQL 895

Query: 436  VSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTP 495
             S+H     L ++M+  GYVPD    L  V EE KE  L  HSE+LAI F L+  P G+ 
Sbjct: 896  ESMHLLWNTLLEKMEKIGYVPDRSCVLQNVEEEDKEMFLYSHSERLAITFALLNTPPGST 955

Query: 496  IRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
            I++ KNLRVC DCH  TK+IS I  R IIVRD TRFHHF+DG CSC DYW
Sbjct: 956  IQIVKNLRVCADCHTTTKFISKITTRRIIVRDATRFHHFEDGICSCNDYW 1005



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 91/287 (31%), Positives = 151/287 (52%), Gaps = 14/287 (4%)

Query: 13  LAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPI----K 68
           L     + G LK A+E+FDK+P+ DVV++N M++  L  S+D   A DFF+ + +     
Sbjct: 170 LVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAG-LSQSEDPCEAVDFFRSMQLVGVEP 228

Query: 69  DTASWNTMISGFVQKKNMAKARDL--FLAMPEKNSVSWSAMISGYIECGQLDKAVELFKV 126
            + S   +  G  +  N+   R +  ++   + +S   + +I  Y +CG +D A  +F  
Sbjct: 229 SSVSLLNLFPGICKLSNIELCRSIHGYVFRRDFSSAVSNGLIDLYSKCGDVDVARRVFDQ 288

Query: 127 APVKSVVAWTAMISGYMKFG-YVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHL 185
              +  V+W  M++GY   G +VE       L+L   M    +R N  S  S  L  +  
Sbjct: 289 MVDQDDVSWGTMMAGYAHNGCFVEV------LELFDKMKLGNVRINKVSAVSAFLAAAET 342

Query: 186 SSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMI 245
             L+ GK++H    +  +  D    TPL+ MY KCG+ E A +LF  +Q +D+V W+A+I
Sbjct: 343 IDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAII 402

Query: 246 SGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 292
           +   Q G  E+AL LF +M+++ MKP+ +T +++L AC    L+ LG
Sbjct: 403 AALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLG 449



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 107/386 (27%), Positives = 180/386 (46%), Gaps = 37/386 (9%)

Query: 7   VNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP 66
           V+W +++AG+A   G   +  ELFDK+           L  + +N    V+AF     L 
Sbjct: 295 VSWGTMMAGYA-HNGCFVEVLELFDKMK----------LGNVRINKVSAVSAF-----LA 338

Query: 67  IKDTASWNT--MISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELF 124
             +T        I G   ++ +    D+ +A P         ++  Y +CG+ +KA +LF
Sbjct: 339 AAETIDLEKGKEIHGCALQQRIDS--DILVATP---------LMVMYAKCGETEKAKQLF 387

Query: 125 KVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSH 184
                + +VAW+A+I+  ++ GY      E+ L L + M    ++PN  +L S+L  C+ 
Sbjct: 388 WGLQGRDLVAWSAIIAALVQTGY-----PEEALSLFQEMQNQKMKPNRVTLMSILPACAD 442

Query: 185 LSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAM 244
           LS L+LGK +H    K+ +  D +  T L+SMY KCG    A   F  +  +D+VTWN++
Sbjct: 443 LSLLKLGKSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSL 502

Query: 245 ISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYG 304
           I+GYAQ G    A+ +F K++   + PD+ T V ++ AC     +D G      ++   G
Sbjct: 503 INGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQGT-CIHGLIVKLG 561

Query: 305 IAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSAC--RVHKRLDLAEF 362
             +       ++D+  + G L  A  L  K  F      +  +++A     H +  ++ F
Sbjct: 562 FESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEAISSF 621

Query: 363 AAMNLFNLNPANAAGCYVQLANIYAA 388
             M L N +P +     V  A  Y A
Sbjct: 622 HQMRLENFHPNSVTFVSVLPAAAYLA 647



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 72/272 (26%), Positives = 126/272 (46%), Gaps = 54/272 (19%)

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM------PEKNSVSW----------- 104
           F   P      WN+MI  + + K   +A +++  M      P+K + ++           
Sbjct: 86  FDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKACTGALNL 145

Query: 105 ----------------------SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGY 142
                                 + ++  Y + G L +A E+F   P + VVAW AMI+G 
Sbjct: 146 QEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGL 205

Query: 143 MKFGYVENSWAED---GLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVF 199
                   S +ED    +   R M  +G+ P++ SL ++  G   LS+++L + +H  VF
Sbjct: 206 --------SQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIELCRSIHGYVF 257

Query: 200 KSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALR 259
           +      +     LI +Y KCGD++ A ++F ++  +D V+W  M++GYA +G   + L 
Sbjct: 258 RRDF--SSAVSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLE 315

Query: 260 LFDKMKDEGMKPDSITFVALLLACNHAGLVDL 291
           LFDKMK   ++ + ++ V+  LA   A  +DL
Sbjct: 316 LFDKMKLGNVRINKVSAVSAFLAA--AETIDL 345



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 93/182 (51%), Gaps = 5/182 (2%)

Query: 99  KNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLK 158
           K+  S + +I+ Y    + D A  +F   P  S + W +MI  Y +     +    + L+
Sbjct: 61  KHHHSITHLINLYSLFHKCDLARSVFDSTPNPSRILWNSMIRAYTR-----SKQYNEALE 115

Query: 159 LLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYC 218
           +   M+  G+ P+  + + VL  C+   +LQ G   H  + +  L +D      L+ MY 
Sbjct: 116 MYYCMVEKGLEPDKYTFTFVLKACTGALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYS 175

Query: 219 KCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVA 278
           K GDL+ A ++F ++ ++DVV WNAMI+G +Q     +A+  F  M+  G++P S++ + 
Sbjct: 176 KMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLN 235

Query: 279 LL 280
           L 
Sbjct: 236 LF 237



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 53/223 (23%), Positives = 100/223 (44%), Gaps = 11/223 (4%)

Query: 178 VLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKD 237
           +L  C HL+ L    Q+H  +  S   K   ++T LI++Y      + A  +F       
Sbjct: 38  LLSSCKHLNPLL---QIHAQIIVSGF-KHHHSITHLINLYSLFHKCDLARSVFDSTPNPS 93

Query: 238 VVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFD 297
            + WN+MI  Y +  +  +AL ++  M ++G++PD  TF  +L AC  A  +  G+ +F 
Sbjct: 94  RILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKACTGALNLQEGV-WFH 152

Query: 298 SMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRL 357
             ++  G+         +VD+  + G L  A ++  KMP +   A    +    +     
Sbjct: 153 GEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPC 212

Query: 358 DLAE-FAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIR 399
           +  + F +M L  + P++     V L N++  + K  ++   R
Sbjct: 213 EAVDFFRSMQLVGVEPSS-----VSLLNLFPGICKLSNIELCR 250


>gi|449528002|ref|XP_004170996.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like, partial [Cucumis sativus]
          Length = 658

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 217/546 (39%), Positives = 316/546 (57%), Gaps = 21/546 (3%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
           NS+++ +AK  G++  A+ +FDK+    VVS+  ++S  + N D + A   F +      
Sbjct: 124 NSLVSMYAK-FGQISYARIVFDKLHDRTVVSWTSIISGYVQNGDPMEALNVFKEMRQCNV 182

Query: 70  TASWNTMIS---GFVQKKNMAKARD-------LFLAMPEKNSVSWSAMISGYIECGQLDK 119
              W  ++S    +   +++ + +        L L       +S + M   Y + G ++ 
Sbjct: 183 KPDWIALVSVMTAYTNVEDLGQGKSIHGLVTKLGLEFEPDIVISLTTM---YAKRGLVEV 239

Query: 120 AVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVL 179
           A   F      +++ W AMISGY   GY      E+ +KL R MI   IR ++ ++ S +
Sbjct: 240 ARFFFNRMEKPNLILWNAMISGYANNGY-----GEEAIKLFREMITKNIRVDSITMRSAV 294

Query: 180 LGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVV 239
           L  + + SL+L + +   + KS    DT   T LI MY KCG +  A  +F  +  KDVV
Sbjct: 295 LASAQVGSLELARWLDGYISKSEYRDDTFVNTGLIDMYAKCGSIYLARCVFDRVADKDVV 354

Query: 240 TWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSM 299
            W+ MI GY  HG G++A+ L+++MK  G+ P+  TF+ LL AC ++GLV  G + F  M
Sbjct: 355 LWSVMIMGYGLHGHGQEAICLYNEMKQAGVCPNDGTFIGLLTACKNSGLVKEGWELFHLM 414

Query: 300 VNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDL 359
             D+GI     HY+C+VDLLGRAG L +A D I  MP KP  +++G LLSAC++H+++ L
Sbjct: 415 -PDHGIEPHHQHYSCVVDLLGRAGYLNQAYDFIMSMPIKPGVSVWGALLSACKIHRKVRL 473

Query: 360 AEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVG 419
            E AA  LF L+P N  G YVQL+N+YA+   W  VA +RL M +  + K  G+S IE+ 
Sbjct: 474 GEIAAEQLFILDPYNT-GHYVQLSNLYASAHLWTRVANVRLMMTQKGLNKDLGHSSIEIN 532

Query: 420 TVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSE 479
             +  F+ GDR HP+   I E+L  LEKR+K AGYVP +E  LH +  E  E+ L  HSE
Sbjct: 533 GNLETFQVGDRSHPKSKEIFEELDRLEKRLKAAGYVPHMESVLHDLNHEEIEETLCHHSE 592

Query: 480 KLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTC 539
           +LA+A+G+I    GT +R+ KNLR C +CH A K IS +  REII+RD  RFHHFKDG C
Sbjct: 593 RLAVAYGIISTAPGTTLRITKNLRACINCHSAIKLISKLVDREIIIRDAKRFHHFKDGVC 652

Query: 540 SCGDYW 545
           SCGD+W
Sbjct: 653 SCGDFW 658



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/247 (26%), Positives = 115/247 (46%), Gaps = 15/247 (6%)

Query: 108 ISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLG 167
           I+  +  G ++ A + F+      ++ W A+I GY +   V+          +RM + + 
Sbjct: 26  INACLHFGDVNYAHKAFREVSEPDILLWNAIIKGYTQKNIVDAP--------IRMYMDMQ 77

Query: 168 I---RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 224
           I    PN  +   VL  C   S   +GKQ+H   FK     +      L+SMY K G + 
Sbjct: 78  ISQVHPNCFTFLYVLKACGGTSVEGIGKQIHGQTFKYGFGSNVFVQNSLVSMYAKFGQIS 137

Query: 225 DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 284
            A  +F ++  + VV+W ++ISGY Q+G   +AL +F +M+   +KPD I  V+++ A  
Sbjct: 138 YARIVFDKLHDRTVVSWTSIISGYVQNGDPMEALNVFKEMRQCNVKPDWIALVSVMTA-- 195

Query: 285 HAGLVDLGI-QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAI 343
           +  + DLG  +    +V   G+  +PD    +  +  + G LVE          KP   +
Sbjct: 196 YTNVEDLGQGKSIHGLVTKLGLEFEPDIVISLTTMYAKRG-LVEVARFFFNRMEKPNLIL 254

Query: 344 FGTLLSA 350
           +  ++S 
Sbjct: 255 WNAMISG 261



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 64/143 (44%), Gaps = 1/143 (0%)

Query: 193 QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHG 252
           QV+  +  S L K    +   I+     GD+  A K F E+   D++ WNA+I GY Q  
Sbjct: 5   QVYVQLIVSGLHKCRFLMIKFINACLHFGDVNYAHKAFREVSEPDILLWNAIIKGYTQKN 64

Query: 253 KGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY 312
             +  +R++  M+   + P+  TF+ +L AC    +  +G Q        YG  +     
Sbjct: 65  IVDAPIRMYMDMQISQVHPNCFTFLYVLKACGGTSVEGIGKQ-IHGQTFKYGFGSNVFVQ 123

Query: 313 TCMVDLLGRAGKLVEAVDLIKKM 335
             +V +  + G++  A  +  K+
Sbjct: 124 NSLVSMYAKFGQISYARIVFDKL 146


>gi|413945386|gb|AFW78035.1| hypothetical protein ZEAMMB73_343828 [Zea mays]
          Length = 608

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 200/461 (43%), Positives = 281/461 (60%), Gaps = 13/461 (2%)

Query: 89  ARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYV 148
           AR +F ++  KNSV W+A+ISGY   G   +A++LF+  P   +  WTA+ISG++K G  
Sbjct: 157 ARKVFDSIGVKNSVVWTALISGYASNGCTGEALDLFQSMPAHGLFTWTALISGFVKAGNY 216

Query: 149 ENSWAEDGLKLLRMMIGLGIR-PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDT 207
             +     + L   M    IR  +A  L++V+ G + L++L LG+Q+H  V +       
Sbjct: 217 TGA-----MGLFVEMRRDDIRIHDAFVLATVIGGAADLAALVLGRQLHGFVMRLGFLSSM 271

Query: 208 TALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE 267
                L+ MY KC D+  A ++F  I  +DV++W  ++ G AQHG+ E+   L+++M   
Sbjct: 272 IVGNALVDMYSKCSDIHSAREVFEGITVRDVISWTTILVGEAQHGRAEEVFALYNRMLLA 331

Query: 268 GMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVE 327
           GMKP+ +TFV L+ AC+HAGLV  G Q FDSM  +YG+     HYTC +DLL R+G L E
Sbjct: 332 GMKPNEVTFVGLIYACSHAGLVQKGRQLFDSMKREYGMKPGVQHYTCYLDLLSRSGYLSE 391

Query: 328 AVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYA 387
           A  LI  MP++P  A +G LLSAC+ H    +    A NL  L P + +  Y+ L+N+YA
Sbjct: 392 AEKLITTMPYEPDEATWGALLSACKKHNDTQMCLRVADNLLELRPKDPS-TYILLSNVYA 450

Query: 388 AMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGD---RVHPELVSIHEKLKE 444
              KWD VA++R  M E  + K+PGYSW+E G     F +G+    V  E+      L+E
Sbjct: 451 VNCKWDSVAKVRKIMAEMEIRKVPGYSWVEAGRESRIFHAGEVPLDVGEEITCF---LEE 507

Query: 445 LEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRV 504
           L   M+  GYVPD    +H + E  KEQ L  HSE+LA+AFG++K P G+ IRV KNLRV
Sbjct: 508 LVSEMRKRGYVPDTSSVMHDLEEHEKEQHLFVHSERLAVAFGILKSPPGSVIRVVKNLRV 567

Query: 505 CGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           CGDCH   K+ISAI +R+IIVRD +RFHHF+DG CSC ++W
Sbjct: 568 CGDCHTVMKFISAIAQRKIIVRDASRFHHFEDGNCSCSEFW 608



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 62/189 (32%), Positives = 94/189 (49%), Gaps = 6/189 (3%)

Query: 107 MISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGL 166
           ++S Y     L  A   F  AP + +  ++A+++         +S  E  L LLR M+  
Sbjct: 42  LVSAYARSCLLPDARRAFDDAPRRDLHLYSALLAAVS-----HSSDPELVLPLLRRMLSD 96

Query: 167 -GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLED 225
             +RP+   L+S+      L SL+LG+Q+H     SP   D    + LI MYCKCG  +D
Sbjct: 97  DALRPDHFVLASLASAAGRLRSLRLGRQLHAHFAASPYSADNVVKSSLIDMYCKCGVPQD 156

Query: 226 ACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNH 285
           A K+F  I  K+ V W A+ISGYA +G   +AL LF  M   G+   +      + A N+
Sbjct: 157 ARKVFDSIGVKNSVVWTALISGYASNGCTGEALDLFQSMPAHGLFTWTALISGFVKAGNY 216

Query: 286 AGLVDLGIQ 294
            G + L ++
Sbjct: 217 TGAMGLFVE 225



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 70/298 (23%), Positives = 136/298 (45%), Gaps = 35/298 (11%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           + VK +V W ++++G+A   G   +A +LF  +P   + ++  ++S   + + +   A  
Sbjct: 164 IGVKNSVVWTALISGYASN-GCTGEALDLFQSMPAHGLFTWTALISG-FVKAGNYTGAMG 221

Query: 61  FF-----QRLPIKDTASWNTMISGFVQKKNMAKARDL--------FLAMPEKNSVSWSAM 107
            F       + I D     T+I G      +   R L        FL+    + +  +A+
Sbjct: 222 LFVEMRRDDIRIHDAFVLATVIGGAADLAALVLGRQLHGFVMRLGFLS----SMIVGNAL 277

Query: 108 ISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLG 167
           +  Y +C  +  A E+F+   V+ V++WT ++ G  + G  E  +A     L   M+  G
Sbjct: 278 VDMYSKCSDIHSAREVFEGITVRDVISWTTILVGEAQHGRAEEVFA-----LYNRMLLAG 332

Query: 168 IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKS----PLCKDTTALTPLISMYCKCGDL 223
           ++PN  +   ++  CSH   +Q G+Q+   + +     P  +  T    L+S   + G L
Sbjct: 333 MKPNEVTFVGLIYACSHAGLVQKGRQLFDSMKREYGMKPGVQHYTCYLDLLS---RSGYL 389

Query: 224 EDACKLFLEIQRK-DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKP-DSITFVAL 279
            +A KL   +  + D  TW A++S   +H   +  LR+ D + +  ++P D  T++ L
Sbjct: 390 SEAEKLITTMPYEPDEATWGALLSACKKHNDTQMCLRVADNLLE--LRPKDPSTYILL 445



 Score = 42.4 bits (98), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 27/104 (25%), Positives = 49/104 (47%), Gaps = 1/104 (0%)

Query: 192 KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQH 251
           ++VH  + K  L    +A   L+S Y +   L DA + F +  R+D+  ++A+++  +  
Sbjct: 21  RRVHARLLKEGLADLPSAPALLVSAYARSCLLPDARRAFDDAPRRDLHLYSALLAAVSHS 80

Query: 252 GKGEKALRLFDKM-KDEGMKPDSITFVALLLACNHAGLVDLGIQ 294
              E  L L  +M  D+ ++PD     +L  A      + LG Q
Sbjct: 81  SDPELVLPLLRRMLSDDALRPDHFVLASLASAAGRLRSLRLGRQ 124


>gi|225453758|ref|XP_002270092.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 687

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 210/546 (38%), Positives = 311/546 (56%), Gaps = 19/546 (3%)

Query: 11  SVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP---- 66
           + L  F    G    A ++FD+    DVV++NIM++   LN      AFD    +     
Sbjct: 150 NALIQFYHNCGSFGCACDVFDESTVRDVVTWNIMINA-HLNKGLSEKAFDLLDEMTKLDN 208

Query: 67  -IKDTASWNTMISGFVQKKNMAKARDLF-----LAMPEKNSVSWSAMISGYIECGQLDKA 120
              D  +  +++    Q  N+ + + L      L + E   V+ +A++  Y +C  ++ A
Sbjct: 209 LRPDEVTMVSLVPACAQLGNLERGKFLHSYSKELGLDENLRVN-NAILDMYCKCDDIESA 267

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLL 180
            E+F     K V++WT+M+SG  K GY +     + L L + M    I  +  +L  VL 
Sbjct: 268 QEVFNRIREKDVLSWTSMLSGLAKSGYFQ-----EALALFQKMQLNKIELDEITLVGVLS 322

Query: 181 GCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVT 240
            C+   +L  GK +H L+ K  +  D    T L+ MY KCG ++ A ++F  ++ ++V T
Sbjct: 323 ACAQTGALDQGKYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFT 382

Query: 241 WNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV 300
           WNA+I G A HG GE A+ LFD+M+ + + PD +TF+ALL AC+HAGLVD G+  F +M 
Sbjct: 383 WNALIGGLAMHGHGEDAISLFDQMEHDKLMPDDVTFIALLCACSHAGLVDEGLAMFQAMK 442

Query: 301 NDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLA 360
           N + I  + +HY C+VDLL RA K+ +A+  I+ MP K    ++ TLL ACR     DLA
Sbjct: 443 NKFQIEPRMEHYGCVVDLLCRARKVDDALAFIENMPIKANSVLWATLLGACRSGGHFDLA 502

Query: 361 EFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGT 420
           E     +  L P ++ G YV L+N+YA + +WD   ++R  MK   + K PG SWIE+  
Sbjct: 503 EKIGRRVIELEP-DSCGRYVMLSNLYAGVSQWDHALKLRKQMKNKGIEKTPGCSWIELNG 561

Query: 421 VVHEFRSGDRVHPELVSIHEKLKELEKRMKL-AGYVPDLEFALHAVGEEVKEQLLLFHSE 479
           ++H+F +GDR H +   I+  ++E+ +R+ L  G+VP     L  + EE KE  L  HSE
Sbjct: 562 MIHQFVAGDRSHLQTEQIYAMIEEMTRRVNLDGGHVPGTANVLFDIEEEEKEHSLFLHSE 621

Query: 480 KLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTC 539
           KLAIA GLI  P G+PIR+ KNLRVC DCH   K  S +  REI+ RD +RFHHFK+G+C
Sbjct: 622 KLAIALGLISTPSGSPIRIVKNLRVCNDCHSFLKVTSKVYNREIVARDRSRFHHFKEGSC 681

Query: 540 SCGDYW 545
           SC D+W
Sbjct: 682 SCMDFW 687



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 106/222 (47%), Gaps = 7/222 (3%)

Query: 115 GQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASS 174
           G L+ A +LF             MI GY +    +N +  + + L   M+  G+  +  +
Sbjct: 59  GDLNYARKLFTQMQNPDPFICNTMIRGYAR---SQNPY--EAVSLYYFMVERGVPVDNYT 113

Query: 175 LSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ 234
              VL  C+ L +++LG++ H  V K+    D   +  LI  Y  CG    AC +F E  
Sbjct: 114 YPFVLAACARLGAVKLGRRFHCEVLKNGFGSDLFVINALIQFYHNCGSFGCACDVFDEST 173

Query: 235 RKDVVTWNAMISGYAQHGKGEKALRLFDKM-KDEGMKPDSITFVALLLACNHAGLVDLGI 293
            +DVVTWN MI+ +   G  EKA  L D+M K + ++PD +T V+L+ AC   G ++ G 
Sbjct: 174 VRDVVTWNIMINAHLNKGLSEKAFDLLDEMTKLDNLRPDEVTMVSLVPACAQLGNLERG- 232

Query: 294 QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335
           ++  S   + G+         ++D+  +   +  A ++  ++
Sbjct: 233 KFLHSYSKELGLDENLRVNNAILDMYCKCDDIESAQEVFNRI 274



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/142 (31%), Positives = 73/142 (51%), Gaps = 5/142 (3%)

Query: 168 IRPNA--SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYC--KCGDL 223
           I+P++  + L SV    +H +S+   KQ H L+ ++ L  +    + LIS       GDL
Sbjct: 2   IKPSSKCTKLISVDFLKTHCTSISKTKQAHALLLRTHLLHNPLFSSKLISFLALSHSGDL 61

Query: 224 EDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC 283
             A KLF ++Q  D    N MI GYA+     +A+ L+  M + G+  D+ T+  +L AC
Sbjct: 62  NYARKLFTQMQNPDPFICNTMIRGYARSQNPYEAVSLYYFMVERGVPVDNYTYPFVLAAC 121

Query: 284 NHAGLVDLGIQYF-DSMVNDYG 304
              G V LG ++  + + N +G
Sbjct: 122 ARLGAVKLGRRFHCEVLKNGFG 143


>gi|449465002|ref|XP_004150218.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
 gi|449500809|ref|XP_004161200.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 926

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 206/545 (37%), Positives = 302/545 (55%), Gaps = 32/545 (5%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M+ KT V+W S++ G+ ++ G    A +LFD++    VV              DV A   
Sbjct: 414 MDEKTVVSWTSMITGYVRE-GLSDGAIKLFDEMKSRGVVP-------------DVYAVTS 459

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
                 I        ++  ++++ N+           E NS   +A+   Y +CG +  A
Sbjct: 460 ILNACAINGNLKSGKIVHDYIRENNL-----------ETNSFVSNALTDMYAKCGSMKDA 508

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLL 180
            ++F     K V++W  MI GY K     NS   + L L   M     +P+ ++++ +L 
Sbjct: 509 HDVFSHMKKKDVISWNTMIGGYTK-----NSLPNEALTLFAEMQRES-KPDGTTVACILP 562

Query: 181 GCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVT 240
            C+ L++L  G+++H    ++   +D      ++ MY KCG L  A  LF  I  KD+V+
Sbjct: 563 ACASLAALDKGREIHGYALRNGYSEDKYVTNAVVDMYVKCGLLVLARSLFDMIPNKDLVS 622

Query: 241 WNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV 300
           W  MI+GY  HG G +A+  F++M+  G++PD ++F+++L AC+H+GL+D G + F+ M 
Sbjct: 623 WTVMIAGYGMHGYGSEAINTFNQMRMTGIEPDEVSFISILYACSHSGLLDEGWKIFNIMK 682

Query: 301 NDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLA 360
            +  I    +HY CMVDLL R G LV+A   IK MP KP   I+G LL  CR+H  + LA
Sbjct: 683 KECQIEPNLEHYACMVDLLARTGNLVKAHKFIKAMPIKPDATIWGALLCGCRIHHDVKLA 742

Query: 361 EFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGT 420
           E  A  +F L P N  G YV LANIYA  +KW++V ++R  + +  + K PG SWIE+  
Sbjct: 743 EKVAERIFELEPEN-TGYYVLLANIYAEAEKWEEVQKLRKKIGQRGLKKNPGCSWIEIKG 801

Query: 421 VVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEK 480
            ++ F +GD   P+   I   LK L  +MK  GY P   +AL    E  KE  L  HSEK
Sbjct: 802 KINIFVAGDCSKPQAKKIELLLKRLRSKMKEEGYSPKTAYALLNADEREKEVALCGHSEK 861

Query: 481 LAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCS 540
           LA+AFG++ +P G  IRV KNLRVCGDCH   K++S    REII+RD++RFHHFKDG+CS
Sbjct: 862 LAMAFGMLNLPPGKTIRVTKNLRVCGDCHEMAKFMSKSASREIILRDSSRFHHFKDGSCS 921

Query: 541 CGDYW 545
           C  YW
Sbjct: 922 CRGYW 926



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 88/331 (26%), Positives = 167/331 (50%), Gaps = 24/331 (7%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLS--CILLNSDDVVAAFDFFQRLPIK-DTASWNTMI 77
           G LK+ + +FDK+ +  +  +N+M+S      N  + +  F     L IK ++ ++++++
Sbjct: 199 GDLKEGRMVFDKLSESKIFLWNLMISEYSGSGNYGESINLFKQMLELGIKPNSYTFSSIL 258

Query: 78  SGFVQKKNMAKARDLF-----LAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSV 132
             F     + + R +      L     N+V  +++IS Y    ++  A +LF     + V
Sbjct: 259 KCFAAVARVEEGRQVHGLICKLGFNSYNTVV-NSLISFYFVGRKVRCAQKLFDELTDRDV 317

Query: 133 VAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGK 192
           ++W +MISGY+K     N   + G+++   M+  G+  + +++ +V + C+++ +L LGK
Sbjct: 318 ISWNSMISGYVK-----NGLDDRGIEIFIKMLVFGVDIDLATMVNVFVACANIGTLLLGK 372

Query: 193 QVHQLVFKS-PLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQH 251
            +H    K+  L ++      L+ MY KCGDL  A ++F  +  K VV+W +MI+GY + 
Sbjct: 373 VLHSYSIKAATLDREVRFNNTLLDMYSKCGDLNSAIRVFERMDEKTVVSWTSMITGYVRE 432

Query: 252 GKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDY----GIAA 307
           G  + A++LFD+MK  G+ PD     ++L AC   G +  G      +V+DY     +  
Sbjct: 433 GLSDGAIKLFDEMKSRGVVPDVYAVTSILNACAINGNLKSG-----KIVHDYIRENNLET 487

Query: 308 KPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 338
                  + D+  + G + +A D+   M  K
Sbjct: 488 NSFVSNALTDMYAKCGSMKDAHDVFSHMKKK 518



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 71/233 (30%), Positives = 119/233 (51%), Gaps = 15/233 (6%)

Query: 111 YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRP 170
           Y++CG L +   +F       +  W  MIS Y   G    S     + L + M+ LGI+P
Sbjct: 195 YVKCGDLKEGRMVFDKLSESKIFLWNLMISEYSGSGNYGES-----INLFKQMLELGIKP 249

Query: 171 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 230
           N+ + SS+L   + ++ ++ G+QVH L+ K       T +  LIS Y     +  A KLF
Sbjct: 250 NSYTFSSILKCFAAVARVEEGRQVHGLICKLGFNSYNTVVNSLISFYFVGRKVRCAQKLF 309

Query: 231 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVD 290
            E+  +DV++WN+MISGY ++G  ++ + +F KM   G+  D  T V + +AC + G + 
Sbjct: 310 DELTDRDVISWNSMISGYVKNGLDDRGIEIFIKMLVFGVDIDLATMVNVFVACANIGTLL 369

Query: 291 LGIQYFDSMVNDYGI-AAKPDH----YTCMVDLLGRAGKLVEAVDLIKKMPFK 338
           LG      +++ Y I AA  D        ++D+  + G L  A+ + ++M  K
Sbjct: 370 LG-----KVLHSYSIKAATLDREVRFNNTLLDMYSKCGDLNSAIRVFERMDEK 417



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 70/136 (51%), Gaps = 11/136 (8%)

Query: 177 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK 236
           S+L  C+   S++ G++V  ++  S +  D      L+ MY KCGDL++   +F ++   
Sbjct: 155 SILQLCAERKSIRDGRRVRSIIESSGVMIDGILGVKLVFMYVKCGDLKEGRMVFDKLSES 214

Query: 237 DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN-----------H 285
            +  WN MIS Y+  G   +++ LF +M + G+KP+S TF ++L               H
Sbjct: 215 KIFLWNLMISEYSGSGNYGESINLFKQMLELGIKPNSYTFSSILKCFAAVARVEEGRQVH 274

Query: 286 AGLVDLGIQYFDSMVN 301
             +  LG   ++++VN
Sbjct: 275 GLICKLGFNSYNTVVN 290


>gi|296083798|emb|CBI24015.3| unnamed protein product [Vitis vinifera]
          Length = 569

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 202/479 (42%), Positives = 282/479 (58%), Gaps = 39/479 (8%)

Query: 69  DTASWNTMISGFVQKKNMAKARDLFLAMPEK--NSVSWSAMISGYIECGQLDKAVELFKV 126
           D  S N +I  +V  +++ +AR +F  MP++  NSVSW+AMI+ Y++  +L +A  LF  
Sbjct: 128 DGFSLNNLIHMYVNFQSLEQARRVFDNMPQRDRNSVSWNAMIAAYVQSNRLHEAFALFDR 187

Query: 127 APVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLS 186
             +++VV                                     +    +S+L  C+ L 
Sbjct: 188 MRLENVVL------------------------------------DKFVAASMLSACTGLG 211

Query: 187 SLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMIS 246
           +L+ GK +H  + KS +  D+   T +I MYCKCG LE A ++F E+ +K + +WN MI 
Sbjct: 212 ALEQGKWIHGYIEKSGIELDSKLATTVIDMYCKCGCLEKASEVFNELPQKGISSWNCMIG 271

Query: 247 GYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIA 306
           G A HGKGE A+ LF +M+ E + PD ITFV +L AC H+GLV+ G  YF  M    G+ 
Sbjct: 272 GLAMHGKGEAAIELFKEMEREMVAPDGITFVNVLSACAHSGLVEEGKHYFQYMTEVLGLK 331

Query: 307 AKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMN 366
              +H+ CMVDLLGRAG L EA  LI +MP  P   + G L+ ACR+H   +L E     
Sbjct: 332 PGMEHFGCMVDLLGRAGLLEEARKLINEMPVNPDAGVLGALVGACRIHGNTELGEQIGKK 391

Query: 367 LFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFR 426
           +  L P N +G YV LAN+YA+  +W+DVA++R  M +  V K PG+S IE  + V EF 
Sbjct: 392 VIELEPHN-SGRYVLLANLYASAGRWEDVAKVRKLMNDRGVKKAPGFSMIESESGVDEFI 450

Query: 427 SGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFG 486
           +G R HP+   I+ KL E+ + ++  GYVPD +  LH + EE KE  L +HSEKLAIAFG
Sbjct: 451 AGGRAHPQAKEIYAKLDEILETIRSIGYVPDTDGVLHDIDEEEKENPLYYHSEKLAIAFG 510

Query: 487 LIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           L+K   G  +R+ KNLR+C DCH+A+K IS +  REII+RD  RFHHF+ G CSC DYW
Sbjct: 511 LLKTKPGETLRISKNLRICRDCHQASKLISKVYDREIIIRDRNRFHHFRMGGCSCKDYW 569



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 54/197 (27%), Positives = 96/197 (48%), Gaps = 3/197 (1%)

Query: 144 KFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPL 203
           K GY+    A + + +   M+   + PN  +   ++  C    +++ GKQ+H  V K   
Sbjct: 66  KSGYLRWQLARNCIFMYSRMLHKSVSPNKFTYPPLIRACCIDYAIEEGKQIHAHVLKFGF 125

Query: 204 CKDTTALTPLISMYCKCGDLEDACKLFLEIQRKD--VVTWNAMISGYAQHGKGEKALRLF 261
             D  +L  LI MY     LE A ++F  + ++D   V+WNAMI+ Y Q  +  +A  LF
Sbjct: 126 GADGFSLNNLIHMYVNFQSLEQARRVFDNMPQRDRNSVSWNAMIAAYVQSNRLHEAFALF 185

Query: 262 DKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGR 321
           D+M+ E +  D     ++L AC   G ++ G ++    +   GI       T ++D+  +
Sbjct: 186 DRMRLENVVLDKFVAASMLSACTGLGALEQG-KWIHGYIEKSGIELDSKLATTVIDMYCK 244

Query: 322 AGKLVEAVDLIKKMPFK 338
            G L +A ++  ++P K
Sbjct: 245 CGCLEKASEVFNELPQK 261



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 74/311 (23%), Positives = 133/311 (42%), Gaps = 44/311 (14%)

Query: 23  LKDAQELFDKIPQPD--VVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           L+ A+ +FD +PQ D   VS+N M++   + S+ +  AF  F R+ ++     N ++  F
Sbjct: 145 LEQARRVFDNMPQRDRNSVSWNAMIAA-YVQSNRLHEAFALFDRMRLE-----NVVLDKF 198

Query: 81  VQKKNMAKARDL--------FLAMPEKNSVSW-----SAMISGYIECGQLDKAVELFKVA 127
           V    ++    L             EK+ +       + +I  Y +CG L+KA E+F   
Sbjct: 199 VAASMLSACTGLGALEQGKWIHGYIEKSGIELDSKLATTVIDMYCKCGCLEKASEVFNEL 258

Query: 128 PVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSS 187
           P K + +W  MI G    G       E  ++L + M    + P+  +  +VL  C+H   
Sbjct: 259 PQKGISSWNCMIGGLAMHGK-----GEAAIELFKEMEREMVAPDGITFVNVLSACAHSGL 313

Query: 188 LQLGKQVHQLVFKSPLCKDTTALTP-------LISMYCKCGDLEDACKLFLEIQ-RKDVV 239
           ++ GK   Q +       +   L P       ++ +  + G LE+A KL  E+    D  
Sbjct: 314 VEEGKHYFQYM------TEVLGLKPGMEHFGCMVDLLGRAGLLEEARKLINEMPVNPDAG 367

Query: 240 TWNAMISGYAQHGKGEKALRLFDKMKDEGMKP-DSITFVALLLACNHAGLVDLGIQYFDS 298
              A++     HG  E   ++  K+ +  ++P +S  +V L      AG  +  +     
Sbjct: 368 VLGALVGACRIHGNTELGEQIGKKVIE--LEPHNSGRYVLLANLYASAGRWE-DVAKVRK 424

Query: 299 MVNDYGIAAKP 309
           ++ND G+   P
Sbjct: 425 LMNDRGVKKAP 435


>gi|79329389|ref|NP_001031987.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171830|sp|Q9FND7.1|PP410_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g40405
 gi|10178152|dbj|BAB11597.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332007161|gb|AED94544.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 612

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 193/470 (41%), Positives = 287/470 (61%), Gaps = 6/470 (1%)

Query: 76  MISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAW 135
           +IS + +   +     +F ++P  + V  +AM++    CG +  A +LF+  P +  +AW
Sbjct: 149 LISLYAELGCLDSCHKVFNSIPCPDFVCRTAMVTACARCGDVVFARKLFEGMPERDPIAW 208

Query: 136 TAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVH 195
            AMISGY + G      + + L +  +M   G++ N  ++ SVL  C+ L +L  G+  H
Sbjct: 209 NAMISGYAQVGE-----SREALNVFHLMQLEGVKVNGVAMISVLSACTQLGALDQGRWAH 263

Query: 196 QLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGE 255
             + ++ +       T L+ +Y KCGD+E A ++F  ++ K+V TW++ ++G A +G GE
Sbjct: 264 SYIERNKIKITVRLATTLVDLYAKCGDMEKAMEVFWGMEEKNVYTWSSALNGLAMNGFGE 323

Query: 256 KALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCM 315
           K L LF  MK +G+ P+++TFV++L  C+  G VD G ++FDSM N++GI  + +HY C+
Sbjct: 324 KCLELFSLMKQDGVTPNAVTFVSVLRGCSVVGFVDEGQRHFDSMRNEFGIEPQLEHYGCL 383

Query: 316 VDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANA 375
           VDL  RAG+L +AV +I++MP KP  A++ +LL A R++K L+L   A+  +  L  AN 
Sbjct: 384 VDLYARAGRLEDAVSIIQQMPMKPHAAVWSSLLHASRMYKNLELGVLASKKMLELETAN- 442

Query: 376 AGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPEL 435
            G YV L+NIYA    WD+V+ +R SMK   V K PG S +EV   VHEF  GD+ HP+ 
Sbjct: 443 HGAYVLLSNIYADSNDWDNVSHVRQSMKSKGVRKQPGCSVMEVNGEVHEFFVGDKSHPKY 502

Query: 436 VSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTP 495
             I    K++ +R++LAGY  D    +  + EE KE  L  HSEK AIAFG++ +    P
Sbjct: 503 TQIDAVWKDISRRLRLAGYKADTTPVMFDIDEEEKEDALCLHSEKAAIAFGIMSLKEDVP 562

Query: 496 IRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           IR+ KNLRVCGDCH+ +  IS I  REIIVRD  RFHHFKDG CSC  +W
Sbjct: 563 IRIVKNLRVCGDCHQVSMMISKIFNREIIVRDRNRFHHFKDGHCSCNGFW 612



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 88/365 (24%), Positives = 148/365 (40%), Gaps = 82/365 (22%)

Query: 117 LDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLG--IRPNASS 174
           LD A ++   +   ++ A  +MI  + K    E S+        R ++  G  ++P+  +
Sbjct: 56  LDYANQILDRSEKPTLFALNSMIRAHCKSPVPEKSF-----DFYRRILSSGNDLKPDNYT 110

Query: 175 LSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMY----------------- 217
           ++ ++  C+ L   + G QVH +  +     D    T LIS+Y                 
Sbjct: 111 VNFLVQACTGLRMRETGLQVHGMTIRRGFDNDPHVQTGLISLYAELGCLDSCHKVFNSIP 170

Query: 218 --------------CKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDK 263
                          +CGD+  A KLF  +  +D + WNAMISGYAQ G+  +AL +F  
Sbjct: 171 CPDFVCRTAMVTACARCGDVVFARKLFEGMPERDPIAWNAMISGYAQVGESREALNVFHL 230

Query: 264 MKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAG 323
           M+ EG+K + +  +++L AC   G +D G ++  S +    I       T +VDL  + G
Sbjct: 231 MQLEGVKVNGVAMISVLSACTQLGALDQG-RWAHSYIERNKIKITVRLATTLVDLYAKCG 289

Query: 324 ----------------------------------KLVEAVDLIKKMPFKPQPAIFGTLLS 349
                                             K +E   L+K+    P    F ++L 
Sbjct: 290 DMEKAMEVFWGMEEKNVYTWSSALNGLAMNGFGEKCLELFSLMKQDGVTPNAVTFVSVLR 349

Query: 350 ACRVHKRLDLAE--FAAM-NLFNLNPA-NAAGCYVQLANIYAAMKKWDDVARI--RLSMK 403
            C V   +D  +  F +M N F + P     GC   L ++YA   + +D   I  ++ MK
Sbjct: 350 GCSVVGFVDEGQRHFDSMRNEFGIEPQLEHYGC---LVDLYARAGRLEDAVSIIQQMPMK 406

Query: 404 ENNVV 408
            +  V
Sbjct: 407 PHAAV 411



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 87/330 (26%), Positives = 134/330 (40%), Gaps = 74/330 (22%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G L    ++F+ IP PD V    M++       DVV A   F+ +P +D  +WN MISG+
Sbjct: 157 GCLDSCHKVFNSIPCPDFVCRTAMVTACA-RCGDVVFARKLFEGMPERDPIAWNAMISGY 215

Query: 81  VQKKNMAKARDLFLAMP-EKNSVSWSAMIS------------------GYIE-------- 113
            Q     +A ++F  M  E   V+  AMIS                   YIE        
Sbjct: 216 AQVGESREALNVFHLMQLEGVKVNGVAMISVLSACTQLGALDQGRWAHSYIERNKIKITV 275

Query: 114 ------------CGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLR 161
                       CG ++KA+E+F     K+V  W++ ++     G   N + E  L+L  
Sbjct: 276 RLATTLVDLYAKCGDMEKAMEVFWGMEEKNVYTWSSALN-----GLAMNGFGEKCLELFS 330

Query: 162 MMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTP-------LI 214
           +M   G+ PNA +  SVL GCS +  +  G    Q  F S   ++   + P       L+
Sbjct: 331 LMKQDGVTPNAVTFVSVLRGCSVVGFVDEG----QRHFDS--MRNEFGIEPQLEHYGCLV 384

Query: 215 SMYCKCGDLEDACKLFLEIQRK-DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDS 273
            +Y + G LEDA  +  ++  K     W++++     +   E  +    KM +       
Sbjct: 385 DLYARAGRLEDAVSIIQQMPMKPHAAVWSSLLHASRMYKNLELGVLASKKMLE------- 437

Query: 274 ITFVALLLACNHAGLVDLGIQYFDSMVNDY 303
                 L   NH   V L   Y DS  ND+
Sbjct: 438 ------LETANHGAYVLLSNIYADS--NDW 459


>gi|297743898|emb|CBI36868.3| unnamed protein product [Vitis vinifera]
          Length = 541

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 219/551 (39%), Positives = 302/551 (54%), Gaps = 50/551 (9%)

Query: 9   WNSVLAGFAKQR----GKLKDAQELFDKIP----QPDVVSYNIML----SCILLNSDDVV 56
           WN+++    + R    G       +F ++     QPD  ++  +L    S  LL+    V
Sbjct: 27  WNTLIRAHVQARAQPTGPTHSPISIFVRMRFHGVQPDFHTFPFLLQSFASPSLLHLGRSV 86

Query: 57  AAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQ 116
            A      L I D     ++IS +     +  AR+LF  MPE+N +SWS MI+GY+ CGQ
Sbjct: 87  HAQILRFGLAI-DPFVQTSLISMYSSSGLVDMARNLFAVMPERNVISWSCMINGYVRCGQ 145

Query: 117 LDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLG-IRPNASSL 175
             +A+ LF+                                     M+G+  +RPN  ++
Sbjct: 146 YKEALALFREM----------------------------------QMLGVNDVRPNEFTM 171

Query: 176 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI-Q 234
           S VL  C  L +L+ GK  H  + K  +  D    T LI MY KCG +E A  +F  +  
Sbjct: 172 SGVLAACGRLGALEHGKWAHAYIDKCGMPVDVVLGTALIDMYAKCGSVEKATWVFSNLGP 231

Query: 235 RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ 294
            KDV+ W+AMISG A HG  E+ + LF KM ++G++P+++TF+A+  AC H GLV  G  
Sbjct: 232 NKDVMAWSAMISGLAMHGLAEECVGLFSKMINQGVRPNAVTFLAVFCACVHGGLVSEGKD 291

Query: 295 YFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVH 354
           Y   M  DY I     HY CMVDL GRAG++ EA +++K MP +P   ++G LLS  R+H
Sbjct: 292 YLRRMTEDYSIIPTIQHYGCMVDLYGRAGRIKEAWNVVKSMPMEPDVLVWGALLSGSRMH 351

Query: 355 KRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYS 414
             ++  E A   L  L P N +G YV L+N+YA   +W+DV  +R  M+   + K+PG S
Sbjct: 352 GDIETCELALKKLIELEPTN-SGAYVLLSNVYAKRGRWEDVRHVRDLMETMGIKKVPGCS 410

Query: 415 WIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLL 474
            IEVG V+HEF  GD  HPE   IH  L+E+ +R+K+ GYV + +  L  + EE KE  L
Sbjct: 411 LIEVGGVLHEFFVGDDSHPETRQIHMMLEEILERLKVEGYVGNTKEVLLDLDEEGKELAL 470

Query: 475 LFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHF 534
             HSEKLA+A+G +K   GTPIR+ KNLR+C DCH A K IS +  REIIVRD  RFHHF
Sbjct: 471 SLHSEKLALAYGFLKTSPGTPIRIVKNLRICRDCHVAIKMISKVFDREIIVRDCNRFHHF 530

Query: 535 KDGTCSCGDYW 545
             G CSC DYW
Sbjct: 531 TQGLCSCRDYW 541



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/205 (24%), Positives = 98/205 (47%), Gaps = 4/205 (1%)

Query: 128 PVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSS 187
           P      W  +I  +++            + +   M   G++P+  +   +L   +  S 
Sbjct: 20  PTLESFLWNTLIRAHVQARAQPTGPTHSPISIFVRMRFHGVQPDFHTFPFLLQSFASPSL 79

Query: 188 LQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISG 247
           L LG+ VH  + +  L  D    T LISMY   G ++ A  LF  +  ++V++W+ MI+G
Sbjct: 80  LHLGRSVHAQILRFGLAIDPFVQTSLISMYSSSGLVDMARNLFAVMPERNVISWSCMING 139

Query: 248 YAQHGKGEKALRLFDKMKDEG---MKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYG 304
           Y + G+ ++AL LF +M+  G   ++P+  T   +L AC   G ++ G ++  + ++  G
Sbjct: 140 YVRCGQYKEALALFREMQMLGVNDVRPNEFTMSGVLAACGRLGALEHG-KWAHAYIDKCG 198

Query: 305 IAAKPDHYTCMVDLLGRAGKLVEAV 329
           +       T ++D+  + G + +A 
Sbjct: 199 MPVDVVLGTALIDMYAKCGSVEKAT 223


>gi|242045096|ref|XP_002460419.1| hypothetical protein SORBIDRAFT_02g027830 [Sorghum bicolor]
 gi|241923796|gb|EER96940.1| hypothetical protein SORBIDRAFT_02g027830 [Sorghum bicolor]
          Length = 635

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 204/533 (38%), Positives = 310/533 (58%), Gaps = 16/533 (3%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G + DA+ +FD IP  DVVS+  +++    N     A       L  +   S  T  S F
Sbjct: 111 GAVSDARHVFDGIPTRDVVSWTYLITGYAQNDMPAEALGLLPDMLRARFRPSGFTFTS-F 169

Query: 81  VQKKNMAKARDLFLAMP--------EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSV 132
           ++       R +   M         +++    SA++  Y  C Q+D A+ +F     K+ 
Sbjct: 170 LKAAGACGGRGIGEQMHALAVKYNLDEDVYVGSALLDMYARCQQMDMAIRVFDWLDSKNE 229

Query: 133 VAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGK 192
           V+W A+I+G+ + G  E +     +K   M    G      + SSV    + + +L+ G+
Sbjct: 230 VSWNALIAGFARKGDGETTL----MKFAEMQRN-GFGATHFTYSSVFSALARIGALEQGR 284

Query: 193 QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHG 252
            VH  + KS           ++ MY K G + DA K+F  + ++D+VTWN M++ +AQ+G
Sbjct: 285 WVHAHMIKSGQKLTAFVANTILGMYAKSGSMVDARKVFDRVDQRDLVTWNTMLTAFAQYG 344

Query: 253 KGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY 312
            G++A+  F++++  G++ + ITF+++L AC+H GLV  G QYFD M+ DY +  + DHY
Sbjct: 345 LGKEAVAHFEEIRKYGIQLNQITFLSVLTACSHGGLVKEGKQYFD-MMKDYNVEPEIDHY 403

Query: 313 TCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNP 372
              VDLLGRAG L EA+  + KMP +P  A++G LL ACR+HK   + ++AA ++F L+P
Sbjct: 404 VSFVDLLGRAGLLKEALIFVFKMPMEPTAAVWGALLGACRMHKNAKIGQYAADHVFELDP 463

Query: 373 ANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVH 432
            +  G  V L NIYA+  +WDD AR+R  MK   V K P  SW+E+   VH F + D  H
Sbjct: 464 EDT-GPPVLLYNIYASTGQWDDAARVRKMMKATGVKKEPACSWVEIENSVHMFVADDSTH 522

Query: 433 PELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPL 492
           P+   I+   +E+  R+K AGYVP+ ++ L  + E+ +E  L +HSEK+A+AF LI +P 
Sbjct: 523 PKSEEIYRMWEEVNTRIKKAGYVPNTDYVLLHIKEQERETKLQYHSEKIALAFALINMPA 582

Query: 493 GTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           G  IR+ KN+R+CGDCH A +Y+S + KREI+VRDT RFHHF +G+CSCGDYW
Sbjct: 583 GATIRIMKNIRICGDCHSAFRYVSEVFKREIVVRDTNRFHHFSNGSCSCGDYW 635



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 62/224 (27%), Positives = 112/224 (50%), Gaps = 9/224 (4%)

Query: 73  WNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISGYIECGQLDKAVELFKVAP 128
           ++++I+   Q KN+A AR +   +       +    +++I  Y +CG +  A  +F   P
Sbjct: 65  YHSIITACAQSKNLAGARAIHSHLSRSRLAGDGFLLNSLIHMYCKCGAVSDARHVFDGIP 124

Query: 129 VKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSL 188
            + VV+WT +I+GY      +N    + L LL  M+    RP+  + +S L         
Sbjct: 125 TRDVVSWTYLITGY-----AQNDMPAEALGLLPDMLRARFRPSGFTFTSFLKAAGACGGR 179

Query: 189 QLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGY 248
            +G+Q+H L  K  L +D    + L+ MY +C  ++ A ++F  +  K+ V+WNA+I+G+
Sbjct: 180 GIGEQMHALAVKYNLDEDVYVGSALLDMYARCQQMDMAIRVFDWLDSKNEVSWNALIAGF 239

Query: 249 AQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 292
           A+ G GE  L  F +M+  G      T+ ++  A    G ++ G
Sbjct: 240 ARKGDGETTLMKFAEMQRNGFGATHFTYSSVFSALARIGALEQG 283



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 45/139 (32%), Positives = 69/139 (49%)

Query: 156 GLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLIS 215
           GL+ L +++   + P      S++  C+   +L   + +H  + +S L  D   L  LI 
Sbjct: 46  GLRELDLLLTGELAPTPRVYHSIITACAQSKNLAGARAIHSHLSRSRLAGDGFLLNSLIH 105

Query: 216 MYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSIT 275
           MYCKCG + DA  +F  I  +DVV+W  +I+GYAQ+    +AL L   M     +P   T
Sbjct: 106 MYCKCGAVSDARHVFDGIPTRDVVSWTYLITGYAQNDMPAEALGLLPDMLRARFRPSGFT 165

Query: 276 FVALLLACNHAGLVDLGIQ 294
           F + L A    G   +G Q
Sbjct: 166 FTSFLKAAGACGGRGIGEQ 184


>gi|449451892|ref|XP_004143694.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Cucumis sativus]
          Length = 673

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 217/546 (39%), Positives = 316/546 (57%), Gaps = 21/546 (3%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
           NS+++ +AK  G++  A+ +FDK+    VVS+  ++S  + N D + A   F +      
Sbjct: 139 NSLVSMYAK-FGQISYARIVFDKLHDRTVVSWTSIISGYVQNGDPMEALNVFKEMRQCNV 197

Query: 70  TASWNTMIS---GFVQKKNMAKARD-------LFLAMPEKNSVSWSAMISGYIECGQLDK 119
              W  ++S    +   +++ + +        L L       +S + M   Y + G ++ 
Sbjct: 198 KPDWIALVSVMTAYTNVEDLGQGKSIHGLVTKLGLEFEPDIVISLTTM---YAKRGLVEV 254

Query: 120 AVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVL 179
           A   F      +++ W AMISGY   GY      E+ +KL R MI   IR ++ ++ S +
Sbjct: 255 ARFFFNRMEKPNLILWNAMISGYANNGY-----GEEAIKLFREMITKNIRVDSITMRSAV 309

Query: 180 LGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVV 239
           L  + + SL+L + +   + KS    DT   T LI MY KCG +  A  +F  +  KDVV
Sbjct: 310 LASAQVGSLELARWLDGYISKSEYRDDTFVNTGLIDMYAKCGSIYLARCVFDRVADKDVV 369

Query: 240 TWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSM 299
            W+ MI GY  HG G++A+ L+++MK  G+ P+  TF+ LL AC ++GLV  G + F  M
Sbjct: 370 LWSVMIMGYGLHGHGQEAICLYNEMKQAGVCPNDGTFIGLLTACKNSGLVKEGWELFHLM 429

Query: 300 VNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDL 359
             D+GI     HY+C+VDLLGRAG L +A D I  MP KP  +++G LLSAC++H+++ L
Sbjct: 430 -PDHGIEPHHQHYSCVVDLLGRAGYLNQAYDFIMSMPIKPGVSVWGALLSACKIHRKVRL 488

Query: 360 AEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVG 419
            E AA  LF L+P N  G YVQL+N+YA+   W  VA +RL M +  + K  G+S IE+ 
Sbjct: 489 GEIAAEQLFILDPYNT-GHYVQLSNLYASAHLWTRVANVRLMMTQKGLNKDLGHSSIEIN 547

Query: 420 TVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSE 479
             +  F+ GDR HP+   I E+L  LEKR+K AGYVP +E  LH +  E  E+ L  HSE
Sbjct: 548 GNLETFQVGDRSHPKSKEIFEELDRLEKRLKAAGYVPHMESVLHDLNHEEIEETLCHHSE 607

Query: 480 KLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTC 539
           +LA+A+G+I    GT +R+ KNLR C +CH A K IS +  REII+RD  RFHHFKDG C
Sbjct: 608 RLAVAYGIISTAPGTTLRITKNLRACINCHSAIKLISKLVDREIIIRDAKRFHHFKDGVC 667

Query: 540 SCGDYW 545
           SCGD+W
Sbjct: 668 SCGDFW 673



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/247 (26%), Positives = 115/247 (46%), Gaps = 15/247 (6%)

Query: 108 ISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLG 167
           I+  +  G ++ A + F+      ++ W A+I GY +   V+          +RM + + 
Sbjct: 41  INACLHFGDVNYAHKAFREVSEPDILLWNAIIKGYTQKNIVDAP--------IRMYMDMQ 92

Query: 168 I---RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 224
           I    PN  +   VL  C   S   +GKQ+H   FK     +      L+SMY K G + 
Sbjct: 93  ISQVHPNCFTFLYVLKACGGTSVEGIGKQIHGQTFKYGFGSNVFVQNSLVSMYAKFGQIS 152

Query: 225 DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 284
            A  +F ++  + VV+W ++ISGY Q+G   +AL +F +M+   +KPD I  V+++ A  
Sbjct: 153 YARIVFDKLHDRTVVSWTSIISGYVQNGDPMEALNVFKEMRQCNVKPDWIALVSVMTA-- 210

Query: 285 HAGLVDLGI-QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAI 343
           +  + DLG  +    +V   G+  +PD    +  +  + G LVE          KP   +
Sbjct: 211 YTNVEDLGQGKSIHGLVTKLGLEFEPDIVISLTTMYAKRG-LVEVARFFFNRMEKPNLIL 269

Query: 344 FGTLLSA 350
           +  ++S 
Sbjct: 270 WNAMISG 276



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 64/143 (44%), Gaps = 1/143 (0%)

Query: 193 QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHG 252
           QV+  +  S L K    +   I+     GD+  A K F E+   D++ WNA+I GY Q  
Sbjct: 20  QVYVQLIVSGLHKCRFLMIKFINACLHFGDVNYAHKAFREVSEPDILLWNAIIKGYTQKN 79

Query: 253 KGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY 312
             +  +R++  M+   + P+  TF+ +L AC    +  +G Q        YG  +     
Sbjct: 80  IVDAPIRMYMDMQISQVHPNCFTFLYVLKACGGTSVEGIGKQ-IHGQTFKYGFGSNVFVQ 138

Query: 313 TCMVDLLGRAGKLVEAVDLIKKM 335
             +V +  + G++  A  +  K+
Sbjct: 139 NSLVSMYAKFGQISYARIVFDKL 161


>gi|449490721|ref|XP_004158687.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g21065-like [Cucumis sativus]
          Length = 609

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 205/552 (37%), Positives = 311/552 (56%), Gaps = 47/552 (8%)

Query: 34  PQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLF 93
           PQ    + +++ + + L++    AA   F ++   +  +WNTMI GF + +N + A +LF
Sbjct: 65  PQNPDFNKHLIFALVSLSAPMSFAA-QIFNQIQAPNIFTWNTMIRGFAESENPSPAVELF 123

Query: 94  LAM-------PEKNSVSW---------------------------------SAMISGYIE 113
             M       P+ ++  +                                 ++++  Y  
Sbjct: 124 SQMHAASSILPDTHTFPFLFKAVAKLMDVSLGEGIHSVVVRNGFDSLRFVQNSLVHMYSV 183

Query: 114 CGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNAS 173
            G L  A ++F++   +  VAW ++I+G+       N    + L L R M   G+ P+  
Sbjct: 184 LGSLXSAYQVFEIMSYRDRVAWNSVINGF-----ALNGMPNEALTLYREMGSEGVEPDGF 238

Query: 174 SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI 233
           ++ S+L  C  L +L LG++VH  + K  L ++  A   L+ +Y KCG+  DA K+F E+
Sbjct: 239 TMVSLLSACVELGALALGERVHMYMVKVGLVQNQHASNALLDLYSKCGNFRDAQKVFDEM 298

Query: 234 QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGI 293
           + + VV+W ++I G A +G G +AL+LF +++ +G+KP  ITFV +L AC+H G++D G 
Sbjct: 299 EERSVVSWTSLIVGLAVNGLGNEALKLFGELERQGLKPSEITFVGVLYACSHCGMLDEGF 358

Query: 294 QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRV 353
            YF  M  +YGI  + +H+ CMVDLL RAGK+ +A D I+ MP  P   I+ TLL AC +
Sbjct: 359 NYFRRMKEEYGILPRIEHHGCMVDLLCRAGKVGDAYDYIRNMPVPPNAVIWRTLLGACTI 418

Query: 354 HKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGY 413
           H  L+L E A   +  L   + +G +V L+N+YA+ ++W DV  +R  M    V K PGY
Sbjct: 419 HGHLELGEVARAEIQRLEQRH-SGDFVLLSNLYASERRWLDVQNVRKIMLMKGVKKTPGY 477

Query: 414 SWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQL 473
           S +E+   V+EF  GDR HP+    +  L ++ + +K+ GYVP     L  + EE KE  
Sbjct: 478 SLVELKNRVYEFIMGDRSHPQSEETYAMLAKITQLLKIEGYVPRTVNVLADIEEEEKETA 537

Query: 474 LLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHH 533
           L  H+EK+AIAF L+  P GTPIR+ KNLRVC DCH A K IS + +REIIVRD +RFHH
Sbjct: 538 LSHHTEKVAIAFMLVNTPPGTPIRIMKNLRVCADCHLAIKLISKVFEREIIVRDRSRFHH 597

Query: 534 FKDGTCSCGDYW 545
           FKDG+CSC DYW
Sbjct: 598 FKDGSCSCKDYW 609


>gi|357497455|ref|XP_003619016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494031|gb|AES75234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 999

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 209/555 (37%), Positives = 315/555 (56%), Gaps = 32/555 (5%)

Query: 3   VKTTVNWN----SVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAA 58
           +KT   +N    SVL     + GKL  A ++F ++ + DVVS+  M++      D    A
Sbjct: 465 LKTGFQFNVYVSSVLIDMYAKHGKLDHALKIFRRLKENDVVSWTAMIAG-YTQHDKFTEA 523

Query: 59  FDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSW--------SAMISG 110
            + F+ +  +   S N   +  +      +A D    +  ++ +S         +A++S 
Sbjct: 524 LNLFKEMQDQGIKSDNIGFASAISACAGIQALDQGRQIHAQSCLSGYSDDLSIGNALVSL 583

Query: 111 YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRP 170
           Y  CG++ +A   F     K  V+W +++SG+ + GY E     + L +   M   G+  
Sbjct: 584 YARCGKVREAYAAFDQIYAKDNVSWNSLVSGFAQSGYFE-----EALNIFAQMNKAGLEI 638

Query: 171 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 230
           N+ +  S +   ++++++++GKQ+H ++ K+    +T     LI++Y KCG ++D     
Sbjct: 639 NSFTFGSAVSAAANIANVRIGKQIHGMIRKTGYDSETEVSNALITLYAKCGTIDD----- 693

Query: 231 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVD 290
                   ++WN+MI+GY+QHG G +AL+LF+ MK   + P+ +TFV +L AC+H GLVD
Sbjct: 694 --------ISWNSMITGYSQHGCGFEALKLFEDMKQLDVLPNHVTFVGVLSACSHVGLVD 745

Query: 291 LGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSA 350
            GI YF SM   + +  KP+HY C+VDLLGR+G L  A   +++MP +P   ++ TLLSA
Sbjct: 746 EGISYFRSMSEAHNLVPKPEHYACVVDLLGRSGLLSRAKRFVEEMPIQPDAMVWRTLLSA 805

Query: 351 CRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKM 410
           C VHK +D+ EFAA +L  L P ++A  YV ++N+YA   KWD   R R  MK+  V K 
Sbjct: 806 CNVHKNIDIGEFAASHLLELEPKDSA-TYVLVSNMYAVSGKWDCRDRTRQMMKDRGVKKE 864

Query: 411 PGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVK 470
           PG SW+EV   VH F +GD+ HP    I+E L+ L+ R    GYVP     L       K
Sbjct: 865 PGRSWVEVDNSVHAFFAGDQNHPRADMIYEYLRGLDFRAAENGYVPRCNSLLSDAEIRQK 924

Query: 471 EQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTR 530
           +   + HSE+LAIAFGL+ +   TP+ VFKNLRVC DCH   K++S I  R IIVRD+ R
Sbjct: 925 DPTEIIHSERLAIAFGLLSLTSSTPLYVFKNLRVCEDCHNWIKHVSKITDRVIIVRDSYR 984

Query: 531 FHHFKDGTCSCGDYW 545
           FHHFK G+CSC DYW
Sbjct: 985 FHHFKVGSCSCKDYW 999



 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 116/472 (24%), Positives = 213/472 (45%), Gaps = 88/472 (18%)

Query: 19  QRGKLKDAQELFDKIPQPDVVSYNIMLS---------------C-ILLNSDDVVAAFDFF 62
           + G L  A+++F+ +   D VS+  M+S               C I+L++   V  F+F 
Sbjct: 211 KNGFLSSAKKVFENLKARDSVSWVAMISGLSQNGYEEEAMLLFCQIVLSACTKVEFFEFG 270

Query: 63  QRLP--------IKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIEC 114
           ++L           +T   N +++ + +  N++ A  +F  M +++ VS++++ISG  + 
Sbjct: 271 KQLHGLVLKQGFSSETYVCNALVTLYSRSGNLSSAEQIFHCMSQRDRVSYNSLISGLAQQ 330

Query: 115 GQLDKAVELFK-------------VAPVKS--------------------------VVAW 135
           G +++A+ LFK             VA + S                          +V  
Sbjct: 331 GYINRALALFKKMNLDCQKPDCVTVASLLSACASVGALPNGKQFHSYAIKAGMTSDIVVE 390

Query: 136 TAMISGYMK-------------FGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGC 182
            +++  Y+K             +G ++N       ++   M   GI PN  +  S+L  C
Sbjct: 391 GSLLDLYVKCSDIKTAHEFFLCYGQLDN--LNKSFQIFTQMQIEGIVPNQFTYPSILKTC 448

Query: 183 SHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWN 242
           + L +  LG+Q+H  V K+    +    + LI MY K G L+ A K+F  ++  DVV+W 
Sbjct: 449 TTLGATDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKHGKLDHALKIFRRLKENDVVSWT 508

Query: 243 AMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ-YFDSMVN 301
           AMI+GY QH K  +AL LF +M+D+G+K D+I F + + AC     +D G Q +  S ++
Sbjct: 509 AMIAGYTQHDKFTEALNLFKEMQDQGIKSDNIGFASAISACAGIQALDQGRQIHAQSCLS 568

Query: 302 DYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAE 361
            Y       +   +V L  R GK+ EA     ++  K   + + +L+S        +   
Sbjct: 569 GYSDDLSIGN--ALVSLYARCGKVREAYAAFDQIYAKDNVS-WNSLVSGFAQSGYFE--- 622

Query: 362 FAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGY 413
             A+N+F     N AG  +      +A+    ++A +R+  + + +++  GY
Sbjct: 623 -EALNIF--AQMNKAGLEINSFTFGSAVSAAANIANVRIGKQIHGMIRKTGY 671



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 107/425 (25%), Positives = 177/425 (41%), Gaps = 85/425 (20%)

Query: 54  DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK-------------- 99
           D+  A + F  +PI+  + WN + + F+ ++ M +   LF  M  K              
Sbjct: 112 DLNCAVNVFDEMPIRSLSCWNRIFNTFIAERLMGRVPGLFRRMLTKNVEFDERIFAVVLR 171

Query: 100 ----NSVSW----------------------SAMISGYIECGQLDKAVELFKVAPVKSVV 133
               N+VS+                      + +I  Y + G L  A ++F+    +  V
Sbjct: 172 GCSGNAVSFRFVEQIHAKTITSGFESSTFICNPLIDLYFKNGFLSSAKKVFENLKARDSV 231

Query: 134 AWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ 193
           +W AMISG  + GY E +          M++   I         VL  C+ +   + GKQ
Sbjct: 232 SWVAMISGLSQNGYEEEA----------MLLFCQI---------VLSACTKVEFFEFGKQ 272

Query: 194 VHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGK 253
           +H LV K     +T     L+++Y + G+L  A ++F  + ++D V++N++ISG AQ G 
Sbjct: 273 LHGLVLKQGFSSETYVCNALVTLYSRSGNLSSAEQIFHCMSQRDRVSYNSLISGLAQQGY 332

Query: 254 GEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFD-----SMVNDYGIAAK 308
             +AL LF KM  +  KPD +T  +LL AC   G +  G Q+        M +D  +   
Sbjct: 333 INRALALFKKMNLDCQKPDCVTVASLLSACASVGALPNGKQFHSYAIKAGMTSDIVVEGS 392

Query: 309 -PDHYTCMVDL---------LGRAGKLVEAVDLIKKMPFK---PQPAIFGTLLSACRVHK 355
             D Y    D+          G+   L ++  +  +M  +   P    + ++L  C    
Sbjct: 393 LLDLYVKCSDIKTAHEFFLCYGQLDNLNKSFQIFTQMQIEGIVPNQFTYPSILKTCTTLG 452

Query: 356 RLDLAEFAAMNLFNLNPANAAGCYVQ--LANIYAAMKKWDDVARIRLSMKENNVVK---- 409
             DL E     +  L        YV   L ++YA   K D   +I   +KEN+VV     
Sbjct: 453 ATDLGEQIHTQV--LKTGFQFNVYVSSVLIDMYAKHGKLDHALKIFRRLKENDVVSWTAM 510

Query: 410 MPGYS 414
           + GY+
Sbjct: 511 IAGYT 515



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 71/273 (26%), Positives = 117/273 (42%), Gaps = 41/273 (15%)

Query: 107 MISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMK---FGYVENSWAEDGLKLLRMM 163
           +I  Y+  G L+ AV +F   P++S+  W  + + ++     G V          L R M
Sbjct: 103 LIDFYLAFGDLNCAVNVFDEMPIRSLSCWNRIFNTFIAERLMGRVPG--------LFRRM 154

Query: 164 IGLGIRPNASSLSSVLLGCS-HLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGD 222
           +   +  +    + VL GCS +  S +  +Q+H     S     T    PLI +Y K G 
Sbjct: 155 LTKNVEFDERIFAVVLRGCSGNAVSFRFVEQIHAKTITSGFESSTFICNPLIDLYFKNGF 214

Query: 223 LEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMK----------------- 265
           L  A K+F  ++ +D V+W AMISG +Q+G  E+A+ LF ++                  
Sbjct: 215 LSSAKKVFENLKARDSVSWVAMISGLSQNGYEEEAMLLFCQIVLSACTKVEFFEFGKQLH 274

Query: 266 ----DEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGR 321
                +G   ++    AL+   + +G +    Q F  M     ++     Y  ++  L +
Sbjct: 275 GLVLKQGFSSETYVCNALVTLYSRSGNLSSAEQIFHCMSQRDRVS-----YNSLISGLAQ 329

Query: 322 AGKLVEAVDLIKKMPF---KPQPAIFGTLLSAC 351
            G +  A+ L KKM     KP      +LLSAC
Sbjct: 330 QGYINRALALFKKMNLDCQKPDCVTVASLLSAC 362


>gi|225460265|ref|XP_002278647.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Vitis vinifera]
          Length = 610

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 199/458 (43%), Positives = 286/458 (62%), Gaps = 7/458 (1%)

Query: 89  ARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYV 148
            R +F ++  KNS+SW+AMISGY + G+   A++LF+  PVK++++WTA+ISG ++ G  
Sbjct: 159 GRVVFDSISSKNSISWTAMISGYAQSGRKLDAIQLFQKMPVKNLLSWTALISGLVQSG-- 216

Query: 149 ENSWAEDGLKLLRMMIGLGIR-PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDT 207
             +W  D   L   M   GI   +   LSS++   ++L+ L LGKQ+H LV         
Sbjct: 217 --NWV-DSFYLFMEMRSKGIDIVDPFILSSIIGASANLAVLGLGKQIHCLVILLGYESSL 273

Query: 208 TALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE 267
                L+ MY KC D+  A K+F  + ++D+V+W ++I G AQHG  E+AL L+++M   
Sbjct: 274 FVSNALVDMYAKCSDVLAAKKIFGRMVQRDIVSWTSIIVGTAQHGLAEEALSLYNRMLST 333

Query: 268 GMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVE 327
           G+KP+ +TFV L+ AC+H GLV  G  +F+SM+ DYGI     HYTC++DLL R+G L E
Sbjct: 334 GLKPNEVTFVGLIYACSHVGLVSKGRYFFNSMIKDYGINPSLQHYTCLLDLLSRSGHLEE 393

Query: 328 AVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYA 387
           A +LIK MPFKP  A +  LLSAC  H+   +    A +L +L P + +  Y+ L+NIYA
Sbjct: 394 AENLIKAMPFKPDEATWAALLSACNHHRNTLIGIRVADHLLSLKPEDPS-TYILLSNIYA 452

Query: 388 AMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEK 447
           +   W+ V+++R  M    V K PGYS I +G     F +G+  HP    I   L+EL+ 
Sbjct: 453 SAAMWESVSKVRRLMAAMEVKKEPGYSCIVLGKESQVFLAGETSHPAKEEIFGLLEELDA 512

Query: 448 RMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGD 507
            MK  GY+PD    LH + ++ KE+ L +HSE+LA+A+GL+K   G  + + KNLRVCGD
Sbjct: 513 EMKKRGYIPDTSSVLHDLEQQEKERQLFWHSERLAVAYGLLKGIPGMVLHIVKNLRVCGD 572

Query: 508 CHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           CH   K+IS I KREI+VRD  R+HHFKDG CSC ++W
Sbjct: 573 CHTVLKFISIIVKREIVVRDANRYHHFKDGKCSCNNFW 610



 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 97/190 (51%), Gaps = 21/190 (11%)

Query: 107 MISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGL 166
           +I+ Y +CG +  A+ LF   P +  ++W ++++         N+ A      L M   +
Sbjct: 44  LINMYGKCGLIQDALNLFNQLPHRDPISWASILTA--------NNQANLPHLTLSMFPAM 95

Query: 167 ----GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGD 222
               G++P+    + ++  C+ L +++ GKQVH     SP+  D    + L+ MY KCG 
Sbjct: 96  FKQDGLQPDHYVFACLVKACAILGAMKQGKQVHATFIVSPVSDDDVVKSSLVDMYAKCGL 155

Query: 223 LEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA 282
            +    +F  I  K+ ++W AMISGYAQ G+   A++LF KM  + +    +++ AL+  
Sbjct: 156 PDIGRVVFDSISSKNSISWTAMISGYAQSGRKLDAIQLFQKMPVKNL----LSWTALI-- 209

Query: 283 CNHAGLVDLG 292
              +GLV  G
Sbjct: 210 ---SGLVQSG 216



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 72/294 (24%), Positives = 140/294 (47%), Gaps = 27/294 (9%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           ++ K +++W ++++G+A Q G+  DA +LF K+P  +++S+  ++S  L+ S + V +F 
Sbjct: 166 ISSKNSISWTAMISGYA-QSGRKLDAIQLFQKMPVKNLLSWTALISG-LVQSGNWVDSFY 223

Query: 61  FFQRL-----PIKDTASWNTMISGFVQKKNMAKARDL----FLAMPEKNSVSWSAMISGY 111
            F  +      I D    +++I        +   + +     L   E +    +A++  Y
Sbjct: 224 LFMEMRSKGIDIVDPFILSSIIGASANLAVLGLGKQIHCLVILLGYESSLFVSNALVDMY 283

Query: 112 IECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPN 171
            +C  +  A ++F     + +V+WT++I G  + G      AE+ L L   M+  G++PN
Sbjct: 284 AKCSDVLAAKKIFGRMVQRDIVSWTSIIVGTAQHGL-----AEEALSLYNRMLSTGLKPN 338

Query: 172 ASSLSSVLLGCSHLSSLQLGKQVHQLVFK----SPLCKDTTALTPLISMYCKCGDLEDAC 227
             +   ++  CSH+  +  G+     + K    +P  +  T L  L+S   + G LE+A 
Sbjct: 339 EVTFVGLIYACSHVGLVSKGRYFFNSMIKDYGINPSLQHYTCLLDLLS---RSGHLEEAE 395

Query: 228 KLFLEIQRK-DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKP-DSITFVAL 279
            L   +  K D  TW A++S    H      +R+ D +    +KP D  T++ L
Sbjct: 396 NLIKAMPFKPDEATWAALLSACNHHRNTLIGIRVADHLLS--LKPEDPSTYILL 447



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 51/197 (25%), Positives = 89/197 (45%), Gaps = 31/197 (15%)

Query: 173 SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLE 232
           S L   L  C+   S  +GK++H  + K+ + +  +    LI+MY KCG ++DA  LF +
Sbjct: 4   SHLVYQLQACARHQSPPIGKKLHCHIIKTGIDQCKSLSNNLINMYGKCGLIQDALNLFNQ 63

Query: 233 IQRKDVVTWNAMISGYAQHGKGEKALRLFDKM-KDEGMKPDSITFVALLLACNHAGLVDL 291
           +  +D ++W ++++   Q       L +F  M K +G++PD   F  L+ AC   G +  
Sbjct: 64  LPHRDPISWASILTANNQANLPHLTLSMFPAMFKQDGLQPDHYVFACLVKACAILGAMKQ 123

Query: 292 GIQYF---------------DSMVNDYGIAAKPD---------------HYTCMVDLLGR 321
           G Q                  S+V+ Y     PD                +T M+    +
Sbjct: 124 GKQVHATFIVSPVSDDDVVKSSLVDMYAKCGLPDIGRVVFDSISSKNSISWTAMISGYAQ 183

Query: 322 AGKLVEAVDLIKKMPFK 338
           +G+ ++A+ L +KMP K
Sbjct: 184 SGRKLDAIQLFQKMPVK 200


>gi|449433141|ref|XP_004134356.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 654

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 203/533 (38%), Positives = 315/533 (59%), Gaps = 14/533 (2%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNS--DDVVAAFDFFQRLPIK-DTASWNTMI 77
           G LK A+ LF+++   + V +  M+S  + N   ++ +  +   +      D  +  T++
Sbjct: 128 GDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLV 187

Query: 78  SGFVQKKNMAKARDLFLAMPEKN----SVSWSAMISGYIECGQLDKAVELFKVAPVKSVV 133
           S   + K++     L   + E +    +V  SA+++ Y +CG L  A ++F     K V 
Sbjct: 188 SACAELKDLGVGMKLHSHIREMDMKICAVLGSALVNMYAKCGDLKTARQVFDKLSDKDVY 247

Query: 134 AWTAMISGYMKFGYVENSWAEDGLKLLRMMIG-LGIRPNASSLSSVLLGCSHLSSLQLGK 192
           AW+A+I     FGYV+N+ + + L+L R + G   +RPN  ++ +V+  C+ L  L+ G+
Sbjct: 248 AWSALI-----FGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAVISACAQLGDLETGR 302

Query: 193 QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHG 252
            VH  + ++      +    LI M+ KCGD++ A ++F  +  KD+++WN+M++G+A HG
Sbjct: 303 WVHDYITRTQKGHSVSLNNSLIDMFSKCGDIDAAKRIFDSMSYKDLISWNSMVNGFALHG 362

Query: 253 KGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY 312
            G +AL  F  M+   ++PD ITF+ +L AC+HAGLV  G + F  +   YG+  K +HY
Sbjct: 363 LGREALAQFRLMQTTDLQPDEITFIGVLTACSHAGLVQEGKKLFYEIEALYGVRLKSEHY 422

Query: 313 TCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNP 372
            CMVDLL RAG L EA + I+ MP +P  AI+G++L ACRV+  L+L E AA  L  L P
Sbjct: 423 GCMVDLLCRAGLLAEAREFIRVMPLQPDGAIWGSMLGACRVYNNLELGEEAARFLLKLEP 482

Query: 373 ANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVH 432
            N  G Y+ L+NIYA  K W++V ++R  M E  + K PG S + +  + H F +GD  H
Sbjct: 483 TN-DGVYILLSNIYAKRKMWNEVKKVRELMNEKGIQKTPGCSSVVIDNIAHSFLAGDCSH 541

Query: 433 PELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPL 492
           PE+  I   L+++ +++KLAGYV D    L  + +  KE+ +  HSEKLA+ +GL+K  +
Sbjct: 542 PEIAEISIMLRQVREKLKLAGYVADTSEVLLNIDDNKKEESVSQHSEKLALCYGLLKSEI 601

Query: 493 GTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           G  I + KNLRVC DCH   K +S I +R+I +RD  RFHHFKDG+CSC DYW
Sbjct: 602 GGRIVILKNLRVCSDCHTLIKLVSKIYQRQITLRDRNRFHHFKDGSCSCRDYW 654



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 94/381 (24%), Positives = 175/381 (45%), Gaps = 59/381 (15%)

Query: 40  SYNIMLSCIL-LNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPE 98
           S N +++ +L + S  V  A+  F      D  +WN+M+  FV      +A   +  M E
Sbjct: 12  SLNKLIAHVLSMGSLGVGYAYSVFAHTRELDVLTWNSMLRAFVNSNMPRRALQSYTEMLE 71

Query: 99  K-----NSVSWSAMISG--------------------------YIE---------CGQLD 118
           +     +  ++ +++ G                          YIE         CG L 
Sbjct: 72  RSRNVPDRFTFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLK 131

Query: 119 KAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSV 178
            A  LF+    ++ V WT+MISGYMK     N    + L L + M   G  P+  +++++
Sbjct: 132 SARFLFERMGHRNKVVWTSMISGYMK-----NHCPNEALLLYKKMEEDGFSPDEVTMATL 186

Query: 179 LLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDV 238
           +  C+ L  L +G ++H  + +  +       + L++MY KCGDL+ A ++F ++  KDV
Sbjct: 187 VSACAELKDLGVGMKLHSHIREMDMKICAVLGSALVNMYAKCGDLKTARQVFDKLSDKDV 246

Query: 239 VTWNAMISGYAQHGKGEKALRLFDKMK-DEGMKPDSITFVALLLACNHAGLVDLGIQYFD 297
             W+A+I GY ++ +  +AL+LF ++     M+P+ +T +A++ AC   G ++ G     
Sbjct: 247 YAWSALIFGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAVISACAQLGDLETG----- 301

Query: 298 SMVNDYGIAAKPDHY----TCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRV 353
             V+DY    +  H       ++D+  + G +  A  +   M +K   + + ++++   +
Sbjct: 302 RWVHDYITRTQKGHSVSLNNSLIDMFSKCGDIDAAKRIFDSMSYKDLIS-WNSMVNGFAL 360

Query: 354 H--KRLDLAEFAAMNLFNLNP 372
           H   R  LA+F  M   +L P
Sbjct: 361 HGLGREALAQFRLMQTTDLQP 381



 Score = 42.4 bits (98), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 48/198 (24%), Positives = 77/198 (38%), Gaps = 38/198 (19%)

Query: 226 ACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMK-PDSITFVALLLACN 284
           A  +F   +  DV+TWN+M+  +       +AL+ + +M +     PD  TF +LL  C 
Sbjct: 31  AYSVFAHTRELDVLTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLKGCA 90

Query: 285 -----------HAGLV------DLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLV- 326
                      H  +V      DL I+   +++N Y           + + +G   K+V 
Sbjct: 91  LLLEFKVGKVLHGQVVKYMLHSDLYIE--TTLLNMYAACGDLKSARFLFERMGHRNKVVW 148

Query: 327 --------------EAVDLIKKMP---FKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFN 369
                         EA+ L KKM    F P      TL+SAC   K L +      ++  
Sbjct: 149 TSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSHIRE 208

Query: 370 LNPANAAGCYVQLANIYA 387
           ++    A     L N+YA
Sbjct: 209 MDMKICAVLGSALVNMYA 226


>gi|297598748|ref|NP_001046155.2| Os02g0191200 [Oryza sativa Japonica Group]
 gi|46390971|dbj|BAD16484.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50726401|dbj|BAD34012.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|255670678|dbj|BAF08069.2| Os02g0191200 [Oryza sativa Japonica Group]
          Length = 744

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 218/584 (37%), Positives = 327/584 (55%), Gaps = 46/584 (7%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILL--NSDDVVAA 58
           ++VK  V W  +++G AK  G L D Q L  + P  DV+S+  +++       + + V  
Sbjct: 168 IHVKDAVAWTMLISGLAKM-GMLCDTQLLLSQAPVRDVISWTSLIAAYSRANRAREAVGC 226

Query: 59  FDFFQRLPI-KDTASWNTMISGFVQKKNMAKARDLFLAMPEK------------------ 99
           F       I  D  +   ++S   + K++   R L L + EK                  
Sbjct: 227 FKTMLSHGIAPDEVTVIAVLSACAKLKDLELGRSLHLLVEEKGMPTSENLVVALIDMYAK 286

Query: 100 ------------------NSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISG 141
                                SW+A+I GY + G +D A  LF    V+ ++ + +M++G
Sbjct: 287 CGDFGHAQQVFDALGRGPRPQSWNAIIDGYCKHGHVDVARSLFDEMEVRDIITFNSMMTG 346

Query: 142 YMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKS 201
           Y+  G +      + L L   M    +R +  ++ ++L  C+ L +LQ G+ +H  + + 
Sbjct: 347 YIHSGQLR-----EALLLFMSMRRHDLRVDNFTVVNLLTACASLGALQQGRALHACIEQR 401

Query: 202 PLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLF 261
            +  D    T L+ MY KCG +++A  +F  + ++DV TW AMI+G A +G G+ AL  F
Sbjct: 402 LVEADIYLGTALLDMYMKCGRVDEATIVFQRMGKRDVHTWTAMIAGLAFNGMGKAALEHF 461

Query: 262 DKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGR 321
            +M+ +G +P+S++++A+L AC+H+ L++ G  YFD M   Y I  + +HY CM+DLLGR
Sbjct: 462 YQMRCDGFQPNSVSYIAVLTACSHSCLLNEGRLYFDEMRILYNIHPQIEHYGCMIDLLGR 521

Query: 322 AGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQ 381
           +G L EA+DL+K MP +P   I+ ++LSACRVHK +DLA+ AA +L  L P +  G YVQ
Sbjct: 522 SGLLDEAMDLVKTMPIQPNAVIWASILSACRVHKHIDLAQCAAEHLLKLEP-DEDGVYVQ 580

Query: 382 LANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEK 441
           L NIY   ++W++ ++IR+ M+E  V K  GYS I V   VH+F   D+ HP ++ I   
Sbjct: 581 LYNIYIDSRQWENASKIRMLMEERQVKKTAGYSSITVAGQVHKFVVSDKSHPRILEIIAM 640

Query: 442 LKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKN 501
           L+E+  R+K  GY P        V EE KEQ LL HSEKLAIAFGLI +    P+ + KN
Sbjct: 641 LEEISHRLKSLGYSPLTSQITVDVDEEEKEQALLAHSEKLAIAFGLINLAPNLPVHIRKN 700

Query: 502 LRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           LRVC DCH A K IS +  REIIVRD +RFHHF++GTCSC D+W
Sbjct: 701 LRVCEDCHSAIKLISRLWNREIIVRDRSRFHHFREGTCSCNDFW 744



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 80/294 (27%), Positives = 144/294 (48%), Gaps = 38/294 (12%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVV 133
           N++I  +++    A AR  F  +  K++V+W+ +ISG  + G L     L   APV+ V+
Sbjct: 146 NSLIHMYIRLGLAADARRAFDEIHVKDAVAWTMLISGLAKMGMLCDTQLLLSQAPVRDVI 205

Query: 134 AWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ 193
           +WT++I+ Y +      + A + +   + M+  GI P+  ++ +VL  C+ L  L+LG+ 
Sbjct: 206 SWTSLIAAYSR-----ANRAREAVGCFKTMLSHGIAPDEVTVIAVLSACAKLKDLELGRS 260

Query: 194 VHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA-----------------------CK-- 228
           +H LV +  +      +  LI MY KCGD   A                       CK  
Sbjct: 261 LHLLVEEKGMPTSENLVVALIDMYAKCGDFGHAQQVFDALGRGPRPQSWNAIIDGYCKHG 320

Query: 229 -------LFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLL 281
                  LF E++ +D++T+N+M++GY   G+  +AL LF  M+   ++ D+ T V LL 
Sbjct: 321 HVDVARSLFDEMEVRDIITFNSMMTGYIHSGQLREALLLFMSMRRHDLRVDNFTVVNLLT 380

Query: 282 ACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335
           AC   G +  G +   + +    + A     T ++D+  + G++ EA  + ++M
Sbjct: 381 ACASLGALQQG-RALHACIEQRLVEADIYLGTALLDMYMKCGRVDEATIVFQRM 433


>gi|302142249|emb|CBI19452.3| unnamed protein product [Vitis vinifera]
          Length = 921

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 232/641 (36%), Positives = 344/641 (53%), Gaps = 106/641 (16%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKI------PQPDVVSYNIMLSCI--------- 48
           K  V+WN+++A   +QRG+ ++A  LF ++       QP+ V++  +LS +         
Sbjct: 288 KDVVSWNAMIAA-NEQRGEGENALGLFRRMLKVEPPVQPNRVTFLSLLSAVSGLSALRCG 346

Query: 49  -----------------LLNS--------DDVVAAFDFFQRLPIKDTASWNTMISGFVQK 83
                            + NS         +V  A + F+RL ++D  SWN+M++G+ Q 
Sbjct: 347 REIHAHIFRLSLEVDTSITNSLITFYSKCREVGKAREIFERLLLRDIISWNSMLAGYEQN 406

Query: 84  KNMAKARDLFLAM------PEKNSVSW--------------------------------- 104
           +   +  D+F  M      P+ +S++                                  
Sbjct: 407 EQQGRCFDIFKRMMLSGIEPDSHSLTIIFNAASRDSSGLIYFRRGKEIHGYILRRITPGG 466

Query: 105 ------SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLK 158
                 +A++  Y +  ++  A ++FK    +   +W AM+ GY +     N+  ED L 
Sbjct: 467 VSLSVSNAILKMYAKFNRIADAEKIFKGMKNRDSYSWNAMMDGYSR-----NAKFEDVLM 521

Query: 159 LLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLV---FKSPLCKDTTAL----T 211
           +   ++  G   +  SLS +L  C  L SLQLGKQ H +V   F    C    +L     
Sbjct: 522 IFLDILKQGFPLDHVSLSILLTSCGRLVSLQLGKQFHAVVAKLFNGQDCPHQDSLLSINN 581

Query: 212 PLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKP 271
            LISMY KCG ++DA ++FL+++RKDV +W AMI+G A HG   +AL+LF++MK +G+KP
Sbjct: 582 ALISMYSKCGSIKDAAQVFLKMERKDVFSWTAMITGCAHHGLAVEALQLFERMKTDGIKP 641

Query: 272 DSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDL 331
           + +TF+ALL+AC H GLV  G  YFDSM NDYG++   +HY CM+DL GR+G+   A  L
Sbjct: 642 NQVTFLALLMACAHGGLVQEGSYYFDSMYNDYGLSPSIEHYACMIDLFGRSGQFDRAKSL 701

Query: 332 IK--KMPFKPQP----AIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANI 385
           ++     FKP       ++  LL AC   K+LDL   AA  +  L P + A  Y+ LAN+
Sbjct: 702 VEFGITLFKPYHDDILNLWKVLLGACHASKQLDLGVEAATKILELEPEDEA-TYILLANL 760

Query: 386 YAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKEL 445
           YA+   W+D  ++R +M++  + K  G SWI+ G   H F +GD  HP+   I+EKL +L
Sbjct: 761 YASSGLWEDAIKVRKAMRDKGLRKEVGCSWIDTGNRRHVFVAGDVYHPQRKEIYEKLAQL 820

Query: 446 EKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTP-IRVFKNLRV 504
               +  GYVP  E  LH V E  KE +L  HSEKLA++FGL+   +G   IRV KNLRV
Sbjct: 821 NYSCRRMGYVPMTELVLHDVDETEKEAILGCHSEKLAVSFGLLNCGVGNGVIRVMKNLRV 880

Query: 505 CGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           C DCH   K+ S +EKREI++RD+ RFH F+DG+CSCGDYW
Sbjct: 881 CEDCHSWMKFASLLEKREILLRDSQRFHLFRDGSCSCGDYW 921



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 78/289 (26%), Positives = 149/289 (51%), Gaps = 23/289 (7%)

Query: 21  GKLKDAQELFDKIP--QPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTA----SWN 74
           G L+DAQ +FD+      D++ +N +++  + +   V     F + + +   A    ++ 
Sbjct: 170 GVLEDAQRVFDETSLLALDILLWNSIIAAYIFHGCWVEVLRLFCKMVSVGVVAPTELTYA 229

Query: 75  TMI-----SGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPV 129
           +++     SG  +   M   R +   +   N   W+++++ Y +CG L  A +LF+    
Sbjct: 230 SVVNACGSSGEEKYGAMVHGRIIKAGLEATNL--WNSLVTFYGKCGNLQHASQLFERISR 287

Query: 130 KSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLG--IRPNASSLSSVLLGCSHLSS 187
           K VV+W AMI+   + G  EN+     L L R M+ +   ++PN  +  S+L   S LS+
Sbjct: 288 KDVVSWNAMIAANEQRGEGENA-----LGLFRRMLKVEPPVQPNRVTFLSLLSAVSGLSA 342

Query: 188 LQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISG 247
           L+ G+++H  +F+  L  DT+    LI+ Y KC ++  A ++F  +  +D+++WN+M++G
Sbjct: 343 LRCGREIHAHIFRLSLEVDTSITNSLITFYSKCREVGKAREIFERLLLRDIISWNSMLAG 402

Query: 248 YAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYF 296
           Y Q+ +  +   +F +M   G++PDS +   +    N A     G+ YF
Sbjct: 403 YEQNEQQGRCFDIFKRMMLSGIEPDSHSLTIIF---NAASRDSSGLIYF 448



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 95/406 (23%), Positives = 187/406 (46%), Gaps = 65/406 (16%)

Query: 3   VKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFF 62
           ++ T  WNS++  + K  G L+ A +LF++I + DVVS+N M++      +    A   F
Sbjct: 256 LEATNLWNSLVTFYGKC-GNLQHASQLFERISRKDVVSWNAMIAANEQRGEG-ENALGLF 313

Query: 63  QRL-----PIK-DTASWNTMISGFVQKKNMAKARDLF-----LAMPEKNSVSWSAMISGY 111
           +R+     P++ +  ++ +++S       +   R++      L++    S++ +++I+ Y
Sbjct: 314 RRMLKVEPPVQPNRVTFLSLLSAVSGLSALRCGREIHAHIFRLSLEVDTSIT-NSLITFY 372

Query: 112 IECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPN 171
            +C ++ KA E+F+   ++ +++W +M++GY      +N        + + M+  GI P+
Sbjct: 373 SKCREVGKAREIFERLLLRDIISWNSMLAGYE-----QNEQQGRCFDIFKRMMLSGIEPD 427

Query: 172 ASSLSSVLLGCSHLSS----LQLGKQVHQLVFK--SPLCKDTTALTPLISMYCKCGDLED 225
           + SL+ +    S  SS     + GK++H  + +  +P     +    ++ MY K   + D
Sbjct: 428 SHSLTIIFNAASRDSSGLIYFRRGKEIHGYILRRITPGGVSLSVSNAILKMYAKFNRIAD 487

Query: 226 ACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNH 285
           A K+F  ++ +D  +WNAM+ GY+++ K E  L +F  +  +G   D ++   LL +C  
Sbjct: 488 AEKIFKGMKNRDSYSWNAMMDGYSRNAKFEDVLMIFLDILKQGFPLDHVSLSILLTSCGR 547

Query: 286 AGLVDLGIQYF---------------DSM--VNDYGIAAKPD------------------ 310
              + LG Q+                DS+  +N+  I+                      
Sbjct: 548 LVSLQLGKQFHAVVAKLFNGQDCPHQDSLLSINNALISMYSKCGSIKDAAQVFLKMERKD 607

Query: 311 --HYTCMVDLLGRAGKLVEAVDLIKKMP---FKPQPAIFGTLLSAC 351
              +T M+      G  VEA+ L ++M     KP    F  LL AC
Sbjct: 608 VFSWTAMITGCAHHGLAVEALQLFERMKTDGIKPNQVTFLALLMAC 653



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 73/272 (26%), Positives = 130/272 (47%), Gaps = 42/272 (15%)

Query: 116 QLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSL 175
           +L  A +LF   P + V++W+A+I+ Y + G    ++      L + M+G G++PN  SL
Sbjct: 70  RLKCAQQLFDNFPNRDVISWSALIAAYSRCGNFAQAFG-----LFQKMMGEGLQPNGFSL 124

Query: 176 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ- 234
           +S+L        + L +Q+H    ++    D+      I+MY +CG LEDA ++F E   
Sbjct: 125 ASLLKVSCSTGEIGLCRQLHGWSIRTGFGLDSGIRAAWITMYSRCGVLEDAQRVFDETSL 184

Query: 235 -RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEG-MKPDSITFVALLLACNHAG----- 287
              D++ WN++I+ Y  HG   + LRLF KM   G + P  +T+ +++ AC  +G     
Sbjct: 185 LALDILLWNSIIAAYIFHGCWVEVLRLFCKMVSVGVVAPTELTYASVVNACGSSGEEKYG 244

Query: 288 ------LVDLGIQ---YFDSMVNDYGIAAKPDHYTCMVDLLGRA---------------G 323
                 ++  G++    ++S+V  YG      H + + + + R                G
Sbjct: 245 AMVHGRIIKAGLEATNLWNSLVTFYGKCGNLQHASQLFERISRKDVVSWNAMIAANEQRG 304

Query: 324 KLVEAVDLIKKM-----PFKPQPAIFGTLLSA 350
           +   A+ L ++M     P +P    F +LLSA
Sbjct: 305 EGENALGLFRRMLKVEPPVQPNRVTFLSLLSA 336



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 61/122 (50%), Gaps = 2/122 (1%)

Query: 173 SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLE 232
           S+++S     SHL + QL  Q H   F S      +A +  +    +   L+ A +LF  
Sbjct: 23  SNVTSFRFLHSHLRNKQLEFQNHG--FSSQFIFRCSACSKFLVSQSEHERLKCAQQLFDN 80

Query: 233 IQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 292
              +DV++W+A+I+ Y++ G   +A  LF KM  EG++P+  +  +LL      G + L 
Sbjct: 81  FPNRDVISWSALIAAYSRCGNFAQAFGLFQKMMGEGLQPNGFSLASLLKVSCSTGEIGLC 140

Query: 293 IQ 294
            Q
Sbjct: 141 RQ 142


>gi|357453927|ref|XP_003597244.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355486292|gb|AES67495.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 678

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 217/547 (39%), Positives = 305/547 (55%), Gaps = 33/547 (6%)

Query: 16  FAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRL---------- 65
           F  + G L+DA ++FD +   +VVS+  M+ C  +       A D F+ L          
Sbjct: 148 FYSKCGFLRDAWKVFDDMVVKNVVSWTGMI-CGCIEFGKFREAVDLFRGLLESGLRPDGF 206

Query: 66  ----PIKDTASWNTMISGFVQKKNMAK---ARDLFLAMPEKNSVSWSAMISGYIECGQLD 118
                ++  A    + SG    + M +   +R++F+A         ++++  Y +CG ++
Sbjct: 207 VIVRVLRACARLGDLESGRWIDRCMRECGLSRNVFVA---------TSLVDMYTKCGSME 257

Query: 119 KAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSV 178
           +A  +F     K +V W+AMI GY       N    + ++L   M  + +RP+  ++   
Sbjct: 258 EARFVFDGMVEKDIVCWSAMIQGY-----ASNGLPREAIELFFEMRKVNVRPDCYAMVGA 312

Query: 179 LLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDV 238
           L  C+ L +L+LG     L+       +    T LI  Y KCG +E+A  ++  ++ KD 
Sbjct: 313 LSSCASLGALELGNWAKGLMNYEEFLSNPVLGTSLIDFYAKCGSMEEALGVYKMMKEKDR 372

Query: 239 VTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDS 298
           V +NA+ISG A +G+   A  +F +M   G+ P+  TFV LL  C HAGLVD G  YF+S
Sbjct: 373 VVFNAVISGLAMYGQVGAAFGVFGQMGKFGIPPNEHTFVGLLCGCTHAGLVDDGRHYFNS 432

Query: 299 MVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLD 358
           M +D+ +    +HY CMVDLL RAG L EA +LIK MP K    ++G+LL  CR+H+   
Sbjct: 433 MSHDFSVTPTIEHYGCMVDLLARAGFLDEAHNLIKGMPMKANVIVWGSLLGGCRLHRETQ 492

Query: 359 LAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEV 418
           LAE     L  L P N+ G YV L+NIY+A ++WD+  +IR ++ E  + K+PGYSW+EV
Sbjct: 493 LAEHVLKQLIELEPWNS-GHYVLLSNIYSASRRWDEAEKIRSTVNEKGMQKLPGYSWVEV 551

Query: 419 GTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHS 478
             VVHEF  GD  HP    I+EKL+ L K +K AGY P  EF L  V EE KE  L  HS
Sbjct: 552 DGVVHEFLVGDTSHPLSQKIYEKLESLFKDLKEAGYNPTTEFVLFDVEEEEKEHFLGCHS 611

Query: 479 EKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGT 538
           EKLA+AF LI       IRV KNLRVCGDCH A K+IS +  REI++RD  RFH F DG 
Sbjct: 612 EKLAVAFALISTGAKYVIRVVKNLRVCGDCHEAIKHISKVTGREIVIRDNNRFHCFSDGA 671

Query: 539 CSCGDYW 545
           CSC DYW
Sbjct: 672 CSCRDYW 678



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/206 (30%), Positives = 100/206 (48%), Gaps = 5/206 (2%)

Query: 123 LFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGC 182
           +F   P  S       +   M  G V      + + L   M    I P++ + S VL  C
Sbjct: 59  VFHKTPTNS----NTFLYNTMIRGMVSKDRFNNAVHLYASMHKAAIVPDSFTFSFVLKAC 114

Query: 183 SHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWN 242
           + L+   LG  +H LVFK+    D    T ++  Y KCG L DA K+F ++  K+VV+W 
Sbjct: 115 ARLNLFHLGVMIHSLVFKTGFDCDVFVKTNVVCFYSKCGFLRDAWKVFDDMVVKNVVSWT 174

Query: 243 AMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVND 302
            MI G  + GK  +A+ LF  + + G++PD    V +L AC   G ++ G ++ D  + +
Sbjct: 175 GMICGCIEFGKFREAVDLFRGLLESGLRPDGFVIVRVLRACARLGDLESG-RWIDRCMRE 233

Query: 303 YGIAAKPDHYTCMVDLLGRAGKLVEA 328
            G++      T +VD+  + G + EA
Sbjct: 234 CGLSRNVFVATSLVDMYTKCGSMEEA 259


>gi|297738694|emb|CBI27939.3| unnamed protein product [Vitis vinifera]
          Length = 764

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 206/559 (36%), Positives = 323/559 (57%), Gaps = 28/559 (5%)

Query: 3   VKTTVN-----WNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVA 57
           +K+ +N     WNS++  +AK  G    A ++F +IP+ DVVS+  +++  +  ++   +
Sbjct: 218 IKSGINPDSHLWNSLVNVYAKC-GSANYACKVFGEIPERDVVSWTALITGFV--AEGYGS 274

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQ-KKNMAKARDLFL-----AMPEKNSVSW-----SA 106
               F ++  +    +N  +  F+   ++ +   D+ L     A   KNS+       +A
Sbjct: 275 GLRIFNQMLAE---GFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTA 331

Query: 107 MISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGL 166
           ++  Y +   L+ A  +F     + + AWT +++GY + G       E  +K    M   
Sbjct: 332 LVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQDGQ-----GEKAVKCFIQMQRE 386

Query: 167 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 226
           G++PN  +L+S L GCS +++L  G+Q+H +  K+    D    + L+ MY KCG +EDA
Sbjct: 387 GVKPNEFTLASSLSGCSRIATLDSGRQLHSMAIKAGQSGDMFVASALVDMYAKCGCVEDA 446

Query: 227 CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHA 286
             +F  +  +D V+WN +I GY+QHG+G KAL+ F+ M DEG  PD +TF+ +L AC+H 
Sbjct: 447 EVVFDGLVSRDTVSWNTIICGYSQHGQGGKALKAFEAMLDEGTVPDEVTFIGVLSACSHM 506

Query: 287 GLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGT 346
           GL++ G ++F+S+   YGI    +HY CMVD+LGRAGK  E    I++M       I+ T
Sbjct: 507 GLIEEGKKHFNSLSKIYGITPTIEHYACMVDILGRAGKFHEVESFIEEMKLTSNVLIWET 566

Query: 347 LLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENN 406
           +L AC++H  ++  E AAM LF L P   +  Y+ L+N++AA   WDDV  +R  M    
Sbjct: 567 VLGACKMHGNIEFGERAAMKLFELEPEIDSN-YILLSNMFAAKGMWDDVTNVRALMSTRG 625

Query: 407 VVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVG 466
           V K PG SW+EV   VH F S D  HP++  IH KL++L +++   GY P+ +  LH V 
Sbjct: 626 VKKEPGCSWVEVNGQVHVFLSHDGSHPKIREIHLKLQDLHQKLMSVGYTPNTDHVLHNVS 685

Query: 467 EEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVR 526
           +  K++LL +HSE+LA+AF L+       IR+FKNLR+CGDCH   K IS I  +E++VR
Sbjct: 686 DREKQELLFYHSERLALAFALLSTSTRKTIRIFKNLRICGDCHDFMKSISEITNQELVVR 745

Query: 527 DTTRFHHFKDGTCSCGDYW 545
           D   FHHFK+G+CSC ++W
Sbjct: 746 DINCFHHFKNGSCSCQNFW 764



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 82/305 (26%), Positives = 132/305 (43%), Gaps = 41/305 (13%)

Query: 48  ILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVS 103
           + +  + +  A    + +PI+D   WN  +S       + +A  LF  M       N   
Sbjct: 33  VYVKCESLQCARQVLEEMPIQDVQQWNQKLSSANSPYPLQEAVQLFYLMRHTRIRLNQFI 92

Query: 104 WSAMISGYIECGQLDKAVELF----KVAPVKSVVAWTAMISGYMKFGYVENSW------- 152
           ++++IS     G       +     K      ++   A ++ YMK   VEN W       
Sbjct: 93  FASLISAAASLGDNHYGESIHACVCKYGFESDILISNAFVTMYMKTQSVENGWQFFKAMM 152

Query: 153 -------------------AEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ 193
                               + G ++L  ++  G  PN  +  S+L  C+    L  GK 
Sbjct: 153 IENLASRNNLLSGFCDTETCDQGPRILIQLLVEGFEPNMYTFISILKTCASKGDLNEGKA 212

Query: 194 VHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGK 253
           +H  V KS +  D+     L+++Y KCG    ACK+F EI  +DVV+W A+I+G+   G 
Sbjct: 213 IHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIPERDVVSWTALITGFVAEGY 272

Query: 254 GEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV------NDYGIAA 307
           G   LR+F++M  EG  P+  TF+++L +C+    VDLG Q    +V      ND+   A
Sbjct: 273 G-SGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTA 331

Query: 308 KPDHY 312
             D Y
Sbjct: 332 LVDMY 336



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 49/235 (20%), Positives = 106/235 (45%), Gaps = 10/235 (4%)

Query: 104 WSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWA--EDGLKLLR 161
           WS++++ Y++C  L  A ++ +  P++ V  W   +S         NS    ++ ++L  
Sbjct: 27  WSSLVNVYVKCESLQCARQVLEEMPIQDVQQWNQKLSS-------ANSPYPLQEAVQLFY 79

Query: 162 MMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCG 221
           +M    IR N    +S++   + L     G+ +H  V K     D       ++MY K  
Sbjct: 80  LMRHTRIRLNQFIFASLISAAASLGDNHYGESIHACVCKYGFESDILISNAFVTMYMKTQ 139

Query: 222 DLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLL 281
            +E+  + F  +  +++ + N ++SG+      ++  R+  ++  EG +P+  TF+++L 
Sbjct: 140 SVENGWQFFKAMMIENLASRNNLLSGFCDTETCDQGPRILIQLLVEGFEPNMYTFISILK 199

Query: 282 ACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 336
            C   G ++ G +     V   GI      +  +V++  + G    A  +  ++P
Sbjct: 200 TCASKGDLNEG-KAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIP 253



 Score = 43.5 bits (101), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 49/95 (51%), Gaps = 5/95 (5%)

Query: 198 VFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKA 257
           V K+ +C D+   + L+++Y KC  L+ A ++  E+  +DV  WN  +S        ++A
Sbjct: 15  VIKNGICPDSHLWSSLVNVYVKCESLQCARQVLEEMPIQDVQQWNQKLSSANSPYPLQEA 74

Query: 258 LRLFDKMKDEGMKPDSITFVALLLAC-----NHAG 287
           ++LF  M+   ++ +   F +L+ A      NH G
Sbjct: 75  VQLFYLMRHTRIRLNQFIFASLISAAASLGDNHYG 109


>gi|297735590|emb|CBI18084.3| unnamed protein product [Vitis vinifera]
          Length = 496

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 205/435 (47%), Positives = 262/435 (60%), Gaps = 18/435 (4%)

Query: 123 LFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGC 182
           LF      ++  W  MI G      V N   +D ++   +M   G  PN  +   VL  C
Sbjct: 68  LFHQIKQPNIFLWNTMIRGL-----VSNDCFDDAIEFYGLMRSEGFLPNNFTFPFVLKAC 122

Query: 183 SHLSSLQLGKQVHQLVFKS---------PLCKDTTALTPLISMYCKCGDLEDACKLFLEI 233
           + L  LQLG ++H LV K           + ++    T L+ MY KCG++E A  +F  +
Sbjct: 123 ARLLDLQLGVKIHTLVVKEWIHKCIMEMGMVRNVFVGTSLVDMYAKCGNMEKARSVFDGM 182

Query: 234 QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE---GMKPDSITFVALLLACNHAGLVD 290
             KD+V+W AMI GYA +G  ++A+ LF +M+ E   G+KPD  TF+ LL  C HAGLVD
Sbjct: 183 PEKDIVSWGAMIQGYALNGLPKEAIDLFLQMQRENKLGIKPDGNTFIGLLCGCTHAGLVD 242

Query: 291 LGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSA 350
            G +YF+SM   + +    +HY CMVDLLGRAG L EA  LI+ MP +    ++G LL A
Sbjct: 243 EGRRYFNSMYRFFSLTPSIEHYGCMVDLLGRAGLLDEAHQLIRNMPMEANAIVWGALLGA 302

Query: 351 CRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKM 410
           CR+H+   LAE A   L  L P N+ G YV L+NIY+A  KWD+ A++RLSM E  + K 
Sbjct: 303 CRIHRDTQLAELALKQLIELEPWNS-GNYVLLSNIYSANLKWDEAAKVRLSMNEKRIQKP 361

Query: 411 PGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVK 470
           PG SWIEV  +VHEF  GD+ HP    I+ KL EL K+MK+AGYVP  +F L  + EE K
Sbjct: 362 PGCSWIEVDGIVHEFLVGDKYHPLSEKIYAKLDELTKKMKVAGYVPTTDFVLFDIEEEEK 421

Query: 471 EQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTR 530
           E  L  HSEKLAIAFGLI       IRV KNLRVCGDCH A K IS+I  REI VRD  R
Sbjct: 422 EHFLGCHSEKLAIAFGLISATPTAVIRVVKNLRVCGDCHMAIKLISSITGREITVRDNNR 481

Query: 531 FHHFKDGTCSCGDYW 545
           FH F++G+CSC DYW
Sbjct: 482 FHCFREGSCSCNDYW 496



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 61/255 (23%), Positives = 109/255 (42%), Gaps = 48/255 (18%)

Query: 29  LFDKIPQPDVVSYNIMLSCILLNS--DDVVAAFDFFQR---LPIKDTASWNTMISGFVQK 83
           LF +I QP++  +N M+  ++ N   DD +  +   +    LP       N     FV K
Sbjct: 68  LFHQIKQPNIFLWNTMIRGLVSNDCFDDAIEFYGLMRSEGFLP-------NNFTFPFVLK 120

Query: 84  KNMAKARDLFLAMP-------------------EKNSVSWSAMISGYIECGQLDKAVELF 124
              A+  DL L +                     +N    ++++  Y +CG ++KA  +F
Sbjct: 121 A-CARLLDLQLGVKIHTLVVKEWIHKCIMEMGMVRNVFVGTSLVDMYAKCGNMEKARSVF 179

Query: 125 KVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSH 184
              P K +V+W AMI GY   G  +   A D    ++    LGI+P+ ++   +L GC+H
Sbjct: 180 DGMPEKDIVSWGAMIQGYALNGLPKE--AIDLFLQMQRENKLGIKPDGNTFIGLLCGCTH 237

Query: 185 LSSLQLGKQVHQLVFKSPLCKDTTALTPLISMY-C------KCGDLEDACKLFLEI-QRK 236
              +  G++    +++        +LTP I  Y C      + G L++A +L   +    
Sbjct: 238 AGLVDEGRRYFNSMYR------FFSLTPSIEHYGCMVDLLGRAGLLDEAHQLIRNMPMEA 291

Query: 237 DVVTWNAMISGYAQH 251
           + + W A++     H
Sbjct: 292 NAIVWGALLGACRIH 306



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 35/144 (24%), Positives = 63/144 (43%), Gaps = 8/144 (5%)

Query: 203 LCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFD 262
           LC D   L  ++       D      LF +I++ ++  WN MI G   +   + A+  + 
Sbjct: 42  LCHDNYLLNMILRCSFDFSDTNYTRFLFHQIKQPNIFLWNTMIRGLVSNDCFDDAIEFYG 101

Query: 263 KMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDY--------GIAAKPDHYTC 314
            M+ EG  P++ TF  +L AC     + LG++    +V ++        G+       T 
Sbjct: 102 LMRSEGFLPNNFTFPFVLKACARLLDLQLGVKIHTLVVKEWIHKCIMEMGMVRNVFVGTS 161

Query: 315 MVDLLGRAGKLVEAVDLIKKMPFK 338
           +VD+  + G + +A  +   MP K
Sbjct: 162 LVDMYAKCGNMEKARSVFDGMPEK 185


>gi|224089505|ref|XP_002308737.1| predicted protein [Populus trichocarpa]
 gi|222854713|gb|EEE92260.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 207/555 (37%), Positives = 309/555 (55%), Gaps = 55/555 (9%)

Query: 35  QPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFL 94
           + D+V  N +L+ +     D+V A   F  +  +D  +W  +I+G+ Q     + +D  L
Sbjct: 47  RDDLVMQNTLLN-LYAKCGDLVYARKLFDEMSSRDVVTWTALITGYSQHD---RPQDALL 102

Query: 95  AMPE--------------------------------------------KNSVSWSAMISG 110
            +PE                                             N     A++  
Sbjct: 103 LLPEMLRIGLKPNQFTLASLLKAASGVGSTDVLQGRQLHGLCLRYGYDSNVYVSCAILDM 162

Query: 111 YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRP 170
           Y  C  L++A  +F V   K+ V+W A+I+GY + G  + ++      L   M+   ++P
Sbjct: 163 YARCHHLEEAQLIFDVMVSKNEVSWNALIAGYARKGQGDKAFC-----LFSNMLRENVKP 217

Query: 171 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 230
              + SSVL  C+ + SL+ GK VH L+ K            L+ MY K G +EDA K+F
Sbjct: 218 THFTYSSVLCACASMGSLEQGKWVHALMIKWGEKLVAFVGNTLLDMYAKSGSIEDAKKVF 277

Query: 231 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVD 290
             + ++DVV+WN+M++GY+QHG G+ AL+ F++M    + P+ ITF+ +L AC+HAGL+D
Sbjct: 278 DRLAKRDVVSWNSMLTGYSQHGLGKVALQRFEEMLRTRIAPNDITFLCVLTACSHAGLLD 337

Query: 291 LGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSA 350
            G  YFD M+  Y +  +  HY  MVDLLGRAG L  A+  I +MP KP  A++G LL A
Sbjct: 338 EGRHYFD-MMKKYNVEPQISHYVTMVDLLGRAGHLDRAIQFISEMPIKPTAAVWGALLGA 396

Query: 351 CRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKM 410
           CR+HK ++L  +AA  +F L+ ++  G +V L NIYA   +W+D A++R  MKE+ V K 
Sbjct: 397 CRMHKNMELGGYAAECIFELD-SHYPGTHVLLYNIYALAGRWNDAAKVRKMMKESGVKKE 455

Query: 411 PGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVK 470
           P  SW+E+   VH F + D  HP+   IH   +++  ++K  GYVPD    L  + ++ +
Sbjct: 456 PACSWVEMENEVHVFVADDDAHPQRREIHNMWEQISDKIKEIGYVPDSSHVLLCMDQQER 515

Query: 471 EQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTR 530
           E  L +HSEKLA+AF L+  P G+ IR+ KN+R+CGDCH A K++S + +REIIVRDT R
Sbjct: 516 EAKLQYHSEKLALAFALLNTPPGSTIRIKKNIRICGDCHSAFKFVSKLVEREIIVRDTNR 575

Query: 531 FHHFKDGTCSCGDYW 545
           FHHF DG CSC DYW
Sbjct: 576 FHHFCDGACSCEDYW 590



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 55/153 (35%), Positives = 82/153 (53%), Gaps = 1/153 (0%)

Query: 177 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK 236
           ++L  C+HL+ L  GK +H L+  S    D      L+++Y KCGDL  A KLF E+  +
Sbjct: 20  TLLKRCTHLNKLNEGKIIHALLLNSRFRDDLVMQNTLLNLYAKCGDLVYARKLFDEMSSR 79

Query: 237 DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVD-LGIQY 295
           DVVTW A+I+GY+QH + + AL L  +M   G+KP+  T  +LL A +  G  D L  + 
Sbjct: 80  DVVTWTALITGYSQHDRPQDALLLLPEMLRIGLKPNQFTLASLLKAASGVGSTDVLQGRQ 139

Query: 296 FDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEA 328
              +   YG  +       ++D+  R   L EA
Sbjct: 140 LHGLCLRYGYDSNVYVSCAILDMYARCHHLEEA 172


>gi|225463123|ref|XP_002265412.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g34160-like [Vitis vinifera]
          Length = 573

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 197/442 (44%), Positives = 274/442 (61%), Gaps = 8/442 (1%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI 164
           + +I  Y +CG LD A  +F   P++ V AW A+I+G       + S + + L L   M 
Sbjct: 139 TTLIDAYAKCGDLDSAQRVFDEIPLRDVAAWNALIAGL-----AQGSKSSEALALFNRMR 193

Query: 165 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 224
             G + N  S+   L  CS L +L+ G+ VH  V K  L  +      +I MY KCG  +
Sbjct: 194 AEGEKINEISVLGALAACSQLGALRAGEGVHACVRKMDLDINVQVCNAVIDMYAKCGFAD 253

Query: 225 DACKLFLEIQ-RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC 283
              ++F  +   K VVTWN MI  +A HG G +AL LF++M    ++ DS+T++A+L AC
Sbjct: 254 KGFRVFSTMTCGKSVVTWNTMIMAFAMHGDGCRALELFEEMGKTQVEMDSVTYLAVLCAC 313

Query: 284 NHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAI 343
           NHAGLV+ G++ FD MV   G+     HY  +VDLLGRAG+L EA  +I  MP  P   +
Sbjct: 314 NHAGLVEEGVRLFDEMVG-RGVNRNVKHYGSVVDLLGRAGRLGEAYRIINSMPIVPDVVL 372

Query: 344 FGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMK 403
           + +LL AC+ +  +++AE A+  L  +  +N+ G +V L+N+YAA ++W+DV R+R +MK
Sbjct: 373 WQSLLGACKTYGNVEMAEMASRKLVEMG-SNSCGDFVLLSNVYAARERWEDVGRVREAMK 431

Query: 404 ENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALH 463
             +V K+PG+S+IEV  V+H+F +GD+ HP+   I+ KL E+  R+K  GYV +    LH
Sbjct: 432 SRDVRKVPGFSYIEVEGVIHKFVNGDQSHPDWREIYAKLDEIRFRIKAFGYVAETSLVLH 491

Query: 464 AVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREI 523
            +GEE KE  L  HSEKLA+AFGLI    GTPIRV KNLR+CGDCH   K IS I  +EI
Sbjct: 492 DIGEEDKENALCHHSEKLAVAFGLISTSEGTPIRVNKNLRICGDCHVVIKLISKIYDQEI 551

Query: 524 IVRDTTRFHHFKDGTCSCGDYW 545
           IVRD  RFH FKDG+CSC DYW
Sbjct: 552 IVRDRARFHRFKDGSCSCRDYW 573



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 45/125 (36%), Positives = 69/125 (55%)

Query: 168 IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC 227
           + P+A + S  L+  +   +L    Q+H  + +     D    T LI  Y KCGDL+ A 
Sbjct: 96  LHPDALTFSFSLIASARALALSETSQIHSHLLRRGCHADILLGTTLIDAYAKCGDLDSAQ 155

Query: 228 KLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG 287
           ++F EI  +DV  WNA+I+G AQ  K  +AL LF++M+ EG K + I+ +  L AC+  G
Sbjct: 156 RVFDEIPLRDVAAWNALIAGLAQGSKSSEALALFNRMRAEGEKINEISVLGALAACSQLG 215

Query: 288 LVDLG 292
            +  G
Sbjct: 216 ALRAG 220



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 55/250 (22%), Positives = 104/250 (41%), Gaps = 22/250 (8%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G L  AQ +FD+IP  DV ++N +++ +   S     A   F R+  +        + G 
Sbjct: 149 GDLDSAQRVFDEIPLRDVAAWNALIAGLAQGSKS-SEALALFNRMRAEGEKINEISVLGA 207

Query: 81  V---QKKNMAKARDLFLAMPEK-----NSVSWSAMISGYIECGQLDKAVELFKVAPV-KS 131
           +    +    +A +   A   K     N    +A+I  Y +CG  DK   +F      KS
Sbjct: 208 LAACSQLGALRAGEGVHACVRKMDLDINVQVCNAVIDMYAKCGFADKGFRVFSTMTCGKS 267

Query: 132 VVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLG---IRPNASSLSSVLLGCSHLSSL 188
           VV W  MI  +   G        DG + L +   +G   +  ++ +  +VL  C+H   +
Sbjct: 268 VVTWNTMIMAFAMHG--------DGCRALELFEEMGKTQVEMDSVTYLAVLCACNHAGLV 319

Query: 189 QLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ-RKDVVTWNAMISG 247
           + G ++   +    + ++      ++ +  + G L +A ++   +    DVV W +++  
Sbjct: 320 EEGVRLFDEMVGRGVNRNVKHYGSVVDLLGRAGRLGEAYRIINSMPIVPDVVLWQSLLGA 379

Query: 248 YAQHGKGEKA 257
              +G  E A
Sbjct: 380 CKTYGNVEMA 389


>gi|242094040|ref|XP_002437510.1| hypothetical protein SORBIDRAFT_10g028370 [Sorghum bicolor]
 gi|241915733|gb|EER88877.1| hypothetical protein SORBIDRAFT_10g028370 [Sorghum bicolor]
          Length = 653

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 190/474 (40%), Positives = 294/474 (62%), Gaps = 8/474 (1%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVV 133
           N++I  +V   ++  AR +   M  K+ +SW+++++ Y     +  A E+F + PVK +V
Sbjct: 186 NSLIGAYVACGDVGAARKVLDEMVVKDVISWTSIVAAYSRSRDMGSAEEVFALCPVKDMV 245

Query: 134 AWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ 193
           AWTAM++GY      +N+     L+    M G G+  +  SL+  +  C+ L +++    
Sbjct: 246 AWTAMVTGY-----AQNAMPVKALEAFEQMAGAGMPIDEVSLTGAISACAQLGAVRRAVW 300

Query: 194 VHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGK 253
           + ++  +S L ++    + L+ MY KCG +++AC++F  +Q K+V T+++MI G A HG+
Sbjct: 301 IQEIADRSGLGRNVVVGSGLVDMYAKCGLIDEACRVFEGMQEKNVYTYSSMIVGLASHGR 360

Query: 254 GEKALRLFDKM-KDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY 312
              A+ LF+ M +   ++P+ +TF+ +L AC+HAG+V  G  YF  M + YGI    DHY
Sbjct: 361 ANDAIALFNDMVRRADVEPNHVTFIGVLTACSHAGMVKEGRYYFAQMKDRYGILPSADHY 420

Query: 313 TCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNP 372
           TCMVDLLGRAG ++EA+DL+K M  +P   ++G LL ACR+H    +A+ AA +LF L P
Sbjct: 421 TCMVDLLGRAGLVIEALDLVKSMTVEPHGGVWGALLGACRIHGNTKVAKVAAQHLFKLEP 480

Query: 373 ANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIE-VGTVVHEFRSGDRV 431
               G YV L+N  A+  +WD+V+++R  M+   + K P  S  E    +VH+F +GD  
Sbjct: 481 -EGIGNYVLLSNTLASAGEWDEVSKVRKLMRIRGLKKDPAVSSFEGRDGLVHQFFAGDNT 539

Query: 432 HPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVP 491
           HP +  I + L EL  R+KLAGYVP L   ++ V +E KE+LL+ HSEKLA++FGL+ + 
Sbjct: 540 HPWMHEIKKTLLELRARLKLAGYVPVLSSVVYNVSDEEKERLLMGHSEKLALSFGLLTLE 599

Query: 492 LGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
             + IR+ KNLR+C DCH   + +S +E  EIIVRD  RFHHF+DG CSCG +W
Sbjct: 600 SRSSIRIVKNLRICEDCHLFIRLVSKVEPIEIIVRDNMRFHHFRDGECSCGGFW 653



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 74/325 (22%), Positives = 124/325 (38%), Gaps = 82/325 (25%)

Query: 12  VLAGFAKQR-------------GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAA 58
           +L GF K R             G +  A+++ D++   DV+S+  +++     S D+ +A
Sbjct: 174 LLGGFDKHRFVENSLIGAYVACGDVGAARKVLDEMVVKDVISWTSIVAA-YSRSRDMGSA 232

Query: 59  FDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLF-----LAMP---------------- 97
            + F   P+KD  +W  M++G+ Q     KA + F       MP                
Sbjct: 233 EEVFALCPVKDMVAWTAMVTGYAQNAMPVKALEAFEQMAGAGMPIDEVSLTGAISACAQL 292

Query: 98  ------------------EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMI 139
                              +N V  S ++  Y +CG +D+A  +F+    K+V  +++MI
Sbjct: 293 GAVRRAVWIQEIADRSGLGRNVVVGSGLVDMYAKCGLIDEACRVFEGMQEKNVYTYSSMI 352

Query: 140 SGYMKFGYVENSWAEDGLKLLRMMIGLG-IRPNASSLSSVLLGCSHLSSLQLGKQVHQLV 198
            G    G      A D + L   M+    + PN  +   VL  CSH   ++ G+      
Sbjct: 353 VGLASHGR-----ANDAIALFNDMVRRADVEPNHVTFIGVLTACSHAGMVKEGR------ 401

Query: 199 FKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVV----------TWNAMISGY 248
           +     KD   + P    Y    DL     L +E    D+V           W A++   
Sbjct: 402 YYFAQMKDRYGILPSADHYTCMVDLLGRAGLVIEAL--DLVKSMTVEPHGGVWGALLGAC 459

Query: 249 AQHGKGE----KALRLFDKMKDEGM 269
             HG  +     A  LF K++ EG+
Sbjct: 460 RIHGNTKVAKVAAQHLF-KLEPEGI 483


>gi|227463000|gb|ACP39952.1| pentatricopeptide repeat protein [Gossypium hirsutum]
 gi|227463002|gb|ACP39953.1| pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 592

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 210/536 (39%), Positives = 316/536 (58%), Gaps = 30/536 (5%)

Query: 26  AQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDF-------FQRLPIKDTASWNTMIS 78
            + LF  IP+PD   ++ +++        + + F F       ++R+ + + +S N   S
Sbjct: 71  TRRLFFSIPKPDTFLFHSLIT--------LTSKFSFPQESLLCYRRMLLANISSSNYTFS 122

Query: 79  GFVQKKNMAKARDL--------FLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVK 130
             ++      A  +        ++     ++   +A++S Y + G +  A ++F   P K
Sbjct: 123 AVIKSSADLTAFSIGETIHCHVYICGYGLDAYVQAALVSFYAKSGHVMIARKVFDKMPEK 182

Query: 131 SVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQL 190
           +VVAW +MISGY      +N + ++ ++L  +M  LG++P++S+  S+L  C+ + ++ L
Sbjct: 183 TVVAWNSMISGYE-----QNGFGKEAVELFFLMQDLGVKPDSSTFVSLLSACAQVGAIGL 237

Query: 191 GKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQ 250
           G  VH+ + ++    +    T L++MY +CG++  A ++F  ++ K++V W AMISGY  
Sbjct: 238 GFWVHEYIARNCFDLNVVLGTALMNMYSRCGNVSKAREVFDSMEEKNIVAWTAMISGYGM 297

Query: 251 HGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPD 310
           HG G +A+ LF++M  +G +P+++TFVA+L AC HAGLVD G Q F +M  +YG+    +
Sbjct: 298 HGHGSQAIELFNEMSFDGPRPNNVTFVAVLSACAHAGLVDEGRQIFTTMKQEYGLVPSVE 357

Query: 311 HYTCMVDLLGRAGKLVEAVDLIKKM-PFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFN 369
           H  CMVD+LGRAG L EA   IK   P +P PA++  +L AC++HK  DL    A +L +
Sbjct: 358 HQVCMVDMLGRAGHLNEAYQFIKNTSPKEPAPAVWTAMLGACKMHKNFDLGVEVAEHLLS 417

Query: 370 LNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGD 429
           + P N  G YV L+NIYA   + D V +IR  M  N + K  GYS I+V   V+ F  GD
Sbjct: 418 IEPENP-GHYVMLSNIYALAGRMDRVEKIRNIMIRNRLKKEVGYSTIDVDHKVYLFSMGD 476

Query: 430 RVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIK 489
           + HP+   I+  L EL  R + AGY+P  E  +H V EE +E  L +HSEKLAIAFGL+K
Sbjct: 477 KSHPKTNQIYLYLDELMSRCREAGYIPASESVMHEVEEEEREYALRYHSEKLAIAFGLLK 536

Query: 490 VPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
              G  IR+ KNLR+C DCH A KYIS I  REI VRD  RFHHFKDG+CSC DYW
Sbjct: 537 TGSGVAIRIVKNLRMCEDCHTAIKYISIIANREINVRDRLRFHHFKDGSCSCQDYW 592



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 71/262 (27%), Positives = 119/262 (45%), Gaps = 35/262 (13%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLN--SDDVVAAFDFFQRLPI 67
            + L  F  + G +  A+++FDK+P+  VV++N M+S    N    + V  F   Q L +
Sbjct: 156 QAALVSFYAKSGHVMIARKVFDKMPEKTVVAWNSMISGYEQNGFGKEAVELFFLMQDLGV 215

Query: 68  K-DTASWNTMISGFVQKKNMAK--------ARDLFLAMPEKNSVSWSAMISGYIECGQLD 118
           K D++++ +++S   Q   +          AR+ F    + N V  +A+++ Y  CG + 
Sbjct: 216 KPDSSTFVSLLSACAQVGAIGLGFWVHEYIARNCF----DLNVVLGTALMNMYSRCGNVS 271

Query: 119 KAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSV 178
           KA E+F     K++VAWTAMISGY   G+         ++L   M   G RPN  +  +V
Sbjct: 272 KAREVFDSMEEKNIVAWTAMISGYGMHGH-----GSQAIELFNEMSFDGPRPNNVTFVAV 326

Query: 179 LLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTP-------LISMYCKCGDLEDACKLFL 231
           L  C+H   +  G+Q+   +      K    L P       ++ M  + G L +A +   
Sbjct: 327 LSACAHAGLVDEGRQIFTTM------KQEYGLVPSVEHQVCMVDMLGRAGHLNEAYQFIK 380

Query: 232 EIQRKD--VVTWNAMISGYAQH 251
               K+     W AM+     H
Sbjct: 381 NTSPKEPAPAVWTAMLGACKMH 402


>gi|414587344|tpg|DAA37915.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
 gi|414587345|tpg|DAA37916.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
          Length = 920

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 205/543 (37%), Positives = 310/543 (57%), Gaps = 13/543 (2%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNS--DDVVAAFDFFQRLPI 67
           + VL     + G L  A+++ + + + DVVS+  M++  + +   ++ +A F   Q   +
Sbjct: 384 SGVLIDMYSKYGCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGV 443

Query: 68  -KDTASWNTMISGFVQKKNMAKARDL----FLAMPEKNSVSWSAMISGYIECGQLDKAVE 122
             D     +  S     K M +   +    +++    +   W+ +++ Y  CG+ ++A  
Sbjct: 444 WPDNIGLASAASACAGIKAMRQGLQIHARVYVSGYAADISIWNTLVNLYARCGRSEEAFS 503

Query: 123 LFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGC 182
           LF+    K  + W  +ISG   FG  ++   +  L +   M   G + N  +  S +   
Sbjct: 504 LFREIEHKDEITWNGLISG---FG--QSRLYKQALMVFMKMGQAGAKYNVFTFISAISAL 558

Query: 183 SHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWN 242
           ++L+ ++ GKQVH    K+    +T     LIS+Y KCG +EDA  +F E+  ++ V+WN
Sbjct: 559 ANLADIKQGKQVHGRAVKTGHTSETEVANALISLYGKCGSIEDAKMIFSEMSLRNEVSWN 618

Query: 243 AMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVND 302
            +I+  +QHG+G +AL LFD+MK EG+KP+ +TF+ +L AC+H GLV+ G+ YF SM N 
Sbjct: 619 TIITSCSQHGRGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSNV 678

Query: 303 YGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEF 362
           YG+   PDHY C+VD+LGRAG+L  A   + +MP      I+ TLLSAC+VHK +++ E 
Sbjct: 679 YGLNPIPDHYACVVDILGRAGQLDRARRFVDEMPITANAMIWRTLLSACKVHKNIEIGEL 738

Query: 363 AAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVV 422
           AA +L  L P ++A  YV L+N YA   KW +  ++R  MK+  + K PG SWIEV   V
Sbjct: 739 AAKHLLELEPHDSAS-YVLLSNAYAVTGKWANRDQVRKMMKDRGIRKEPGRSWIEVKNAV 797

Query: 423 HEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLA 482
           H F  GDR+HP    I++ L EL  R+   GY  +     H   +E K+     HSEKLA
Sbjct: 798 HAFFVGDRLHPLSDQIYKFLSELNDRLSKIGYKQENPNLFHEKEQEQKDPTAFVHSEKLA 857

Query: 483 IAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCG 542
           +AFGL+ +P   P+RV KNLRVC DCH   K  S + +REI++RD  RFHHF  G+CSCG
Sbjct: 858 VAFGLMTLPPCIPLRVIKNLRVCDDCHSWMKCTSEVTRREIVLRDVYRFHHFNSGSCSCG 917

Query: 543 DYW 545
           DYW
Sbjct: 918 DYW 920



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 84/327 (25%), Positives = 160/327 (48%), Gaps = 13/327 (3%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLS--CILLNSDDVVAAFDFFQRLPIK-DTASWNTMI 77
           G  K A+ +F  +   D V++N ++S      + +  +  FD  Q   ++ D  +  +++
Sbjct: 193 GSFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLL 252

Query: 78  SGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISGYIECGQLDKAVELFKVAPVKSVV 133
           +      ++ K + L   + +     + ++  +++  Y++CG ++ A ++F +    +VV
Sbjct: 253 AACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVV 312

Query: 134 AWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ 193
            W  M+  Y +   +  S+     ++   M   GI PN  +   +L  C+    ++LG+Q
Sbjct: 313 LWNLMLVAYGQISDLAKSF-----EIFGQMQATGIHPNQFTYPCILRTCTCTGQIELGEQ 367

Query: 194 VHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGK 253
           +H L  K+    D      LI MY K G L+ A K+   ++++DVV+W +MI+GY QH  
Sbjct: 368 IHSLSIKNGFESDMYVSGVLIDMYSKYGCLDKARKILEMLEKRDVVSWTSMIAGYVQHDF 427

Query: 254 GEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYT 313
            E+AL  F +M+D G+ PD+I   +   AC     +  G+Q   + V   G AA    + 
Sbjct: 428 CEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQ-IHARVYVSGYAADISIWN 486

Query: 314 CMVDLLGRAGKLVEAVDLIKKMPFKPQ 340
            +V+L  R G+  EA  L +++  K +
Sbjct: 487 TLVNLYARCGRSEEAFSLFREIEHKDE 513



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 116/227 (51%), Gaps = 6/227 (2%)

Query: 107 MISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGL 166
           +I  Y + G + +A ++FK    +  V+W AM+SGY + G       ++  +L   M   
Sbjct: 84  LIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQSGL-----GKEAFRLYSQMHWT 138

Query: 167 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 226
            + P    LSSVL  C+       G+ +H  V+K   C +T     LI++Y   G  + A
Sbjct: 139 AVIPTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNALIALYLGFGSFKLA 198

Query: 227 CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHA 286
            ++F ++   D VT+N +ISG+AQ G GE AL++FD+M+  G++PD +T  +LL AC   
Sbjct: 199 ERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASV 258

Query: 287 GLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIK 333
           G +  G Q   S +   G++        ++DL  + G +  A D+  
Sbjct: 259 GDLQKGKQ-LHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFN 304



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 84/347 (24%), Positives = 161/347 (46%), Gaps = 55/347 (15%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDK------IPQPDVVSYNIMLSCI---LLN 51
           ++ +  V+W ++L+G+A Q G  K+A  L+ +      IP P V+S +++ +C    L  
Sbjct: 104 LSSRDHVSWVAMLSGYA-QSGLGKEAFRLYSQMHWTAVIPTPYVLS-SVLSACTKGKLFA 161

Query: 52  SDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGY 111
              ++ A   +++    +T   N +I+ ++   +   A  +F  M   + V+++ +ISG+
Sbjct: 162 QGRMIHA-QVYKQAFCSETFVGNALIALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGH 220

Query: 112 IECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPN 171
            +CG                                      E  L++   M   G+RP+
Sbjct: 221 AQCGH------------------------------------GECALQIFDEMQLSGLRPD 244

Query: 172 ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFL 231
             +++S+L  C+ +  LQ GKQ+H  + K+ +  D      L+ +Y KCGD+E A  +F 
Sbjct: 245 CVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFN 304

Query: 232 EIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDL 291
              R +VV WN M+  Y Q     K+  +F +M+  G+ P+  T+  +L  C   G ++L
Sbjct: 305 LGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNQFTYPCILRTCTCTGQIEL 364

Query: 292 GIQYFD-SMVNDYGIAAKPDHYTC--MVDLLGRAGKLVEAVDLIKKM 335
           G Q    S+ N +    + D Y    ++D+  + G L +A  +++ +
Sbjct: 365 GEQIHSLSIKNGF----ESDMYVSGVLIDMYSKYGCLDKARKILEML 407



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 70/290 (24%), Positives = 127/290 (43%), Gaps = 36/290 (12%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNI--MLSCI--LLNSDDVVAAF 59
           K  + WN +++GF + R   K A  +F K+ Q     YN+   +S I  L N  D+    
Sbjct: 511 KDEITWNGLISGFGQSR-LYKQALMVFMKMGQAG-AKYNVFTFISAISALANLADIKQGK 568

Query: 60  DFFQRL----PIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECG 115
               R        +T   N +IS + +  ++  A+ +F  M  +N VSW+ +I+   + G
Sbjct: 569 QVHGRAVKTGHTSETEVANALISLYGKCGSIEDAKMIFSEMSLRNEVSWNTIITSCSQHG 628

Query: 116 QLDKAVELFKVAPVKSV----VAWTAMISGYMKFGYVENSWAEDGLKLLRMM---IGLGI 168
           +  +A++LF     + +    V +  +++     G V     E+GL   + M    GL  
Sbjct: 629 RGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLV-----EEGLSYFKSMSNVYGLNP 683

Query: 169 RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKC------GD 222
            P+  +    +LG     + QL +   + V + P+  +      L+S  CK       G+
Sbjct: 684 IPDHYACVVDILG----RAGQLDR-ARRFVDEMPITANAMIWRTLLSA-CKVHKNIEIGE 737

Query: 223 LEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPD 272
           L  A K  LE++  D  ++  + + YA  GK     ++   MKD G++ +
Sbjct: 738 L--AAKHLLELEPHDSASYVLLSNAYAVTGKWANRDQVRKMMKDRGIRKE 785


>gi|15241448|ref|NP_199236.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170229|sp|Q9FFG8.1|PP417_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g44230
 gi|9759524|dbj|BAB10990.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|91806984|gb|ABE66219.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332007694|gb|AED95077.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 657

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 203/549 (36%), Positives = 320/549 (58%), Gaps = 20/549 (3%)

Query: 9   WNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCIL--------LNSDDVVAAFD 60
           W +V+ G+A + GK  +A  ++  + + ++   +   S +L        LN      A  
Sbjct: 117 WTAVIRGYAIE-GKFDEAIAMYGCMRKEEITPVSFTFSALLKACGTMKDLNLGRQFHAQT 175

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
           F  R         NTMI  +V+ +++  AR +F  MPE++ +SW+ +I+ Y   G ++ A
Sbjct: 176 FRLR-GFCFVYVGNTMIDMYVKCESIDCARKVFDEMPERDVISWTELIAAYARVGNMECA 234

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLL 180
            ELF+  P K +VAWTAM++G+      +N+  ++ L+    M   GIR +  +++  + 
Sbjct: 235 AELFESLPTKDMVAWTAMVTGF-----AQNAKPQEALEYFDRMEKSGIRADEVTVAGYIS 289

Query: 181 GCSHLSSLQLGKQVHQLVFKSPLCKDTTAL--TPLISMYCKCGDLEDACKLFLEIQRKDV 238
            C+ L + +   +  Q+  KS        +  + LI MY KCG++E+A  +F+ +  K+V
Sbjct: 290 ACAQLGASKYADRAVQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFMSMNNKNV 349

Query: 239 VTWNAMISGYAQHGKGEKALRLFDKMKDEG-MKPDSITFVALLLACNHAGLVDLGIQYFD 297
            T+++MI G A HG+ ++AL LF  M  +  +KP+++TFV  L+AC+H+GLVD G Q FD
Sbjct: 350 FTYSSMILGLATHGRAQEALHLFHYMVTQTEIKPNTVTFVGALMACSHSGLVDQGRQVFD 409

Query: 298 SMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRL 357
           SM   +G+    DHYTCMVDLLGR G+L EA++LIK M  +P   ++G LL ACR+H   
Sbjct: 410 SMYQTFGVQPTRDHYTCMVDLLGRTGRLQEALELIKTMSVEPHGGVWGALLGACRIHNNP 469

Query: 358 DLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSW-I 416
           ++AE AA +LF L P +  G Y+ L+N+YA+   W  V R+R  +KE  + K P  SW +
Sbjct: 470 EIAEIAAEHLFELEP-DIIGNYILLSNVYASAGDWGGVLRVRKLIKEKGLKKTPAVSWVV 528

Query: 417 EVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLF 476
           +    +H+F  G+  HP    I +KL+EL +R+ + GY PDL    + V +  K  +L+ 
Sbjct: 529 DKNGQMHKFFPGNLNHPMSNKIQDKLEELVERLTVLGYQPDLSSVPYDVSDNAKRLILIQ 588

Query: 477 HSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKD 536
           H+EKLA+AF L+     + I + KNLR+C DCH+  +  S +  + II+RD  RFHHF+ 
Sbjct: 589 HTEKLALAFSLLTTNRDSTITIMKNLRMCLDCHKFMRLASEVTGKVIIMRDNMRFHHFRS 648

Query: 537 GTCSCGDYW 545
           G CSCGD+W
Sbjct: 649 GDCSCGDFW 657



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 72/289 (24%), Positives = 121/289 (41%), Gaps = 82/289 (28%)

Query: 89  ARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYV 148
           AR +   +  +N   W+A+I GY   G+ D+A+ ++                G M+    
Sbjct: 102 ARRVIEPVQFRNPFLWTAVIRGYAIEGKFDEAIAMY----------------GCMR---- 141

Query: 149 ENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK-SPLC--- 204
                E+            I P + + S++L  C  +  L LG+Q H   F+    C   
Sbjct: 142 ----KEE------------ITPVSFTFSALLKACGTMKDLNLGRQFHAQTFRLRGFCFVY 185

Query: 205 ---------------------------KDTTALTPLISMYCKCGDLEDACKLFLEIQRKD 237
                                      +D  + T LI+ Y + G++E A +LF  +  KD
Sbjct: 186 VGNTMIDMYVKCESIDCARKVFDEMPERDVISWTELIAAYARVGNMECAAELFESLPTKD 245

Query: 238 VVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFD 297
           +V W AM++G+AQ+ K ++AL  FD+M+  G++ D +T    + AC   G      +Y D
Sbjct: 246 MVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAGYISACAQLG----ASKYAD 301

Query: 298 SMVNDYGIAAK-----PDHY---TCMVDLLGRAGKLVEAVDLIKKMPFK 338
             V    IA K      DH    + ++D+  + G + EAV++   M  K
Sbjct: 302 RAVQ---IAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFMSMNNK 347



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 44/125 (35%), Positives = 66/125 (52%), Gaps = 5/125 (4%)

Query: 173 SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLED--ACKLF 230
           SSL S L  C +L+ +   KQ+H  V +  L +    LT LI    K G   D  A ++ 
Sbjct: 50  SSLISKLDDCINLNQI---KQIHGHVLRKGLDQSCYILTKLIRTLTKLGVPMDPYARRVI 106

Query: 231 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVD 290
             +Q ++   W A+I GYA  GK ++A+ ++  M+ E + P S TF ALL AC     ++
Sbjct: 107 EPVQFRNPFLWTAVIRGYAIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGTMKDLN 166

Query: 291 LGIQY 295
           LG Q+
Sbjct: 167 LGRQF 171


>gi|356538057|ref|XP_003537521.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Glycine max]
          Length = 611

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 222/577 (38%), Positives = 319/577 (55%), Gaps = 48/577 (8%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSY-NIMLSCILLNS---------------- 52
           N++L  + K  G ++DA +LFD +P+ D V++ +++ +C L N                 
Sbjct: 42  NTLLNAYGKC-GLIQDALQLFDALPRRDPVAWASLLTACNLSNRPHRALSISRSLLSTGF 100

Query: 53  --DDVVAA---------------------FDFFQRLPIKDTASWNTMISGFVQKKNMAKA 89
             D  V A                       FF      D    +++I  + +       
Sbjct: 101 HPDHFVFASLVKACANLGVLHVKQGKQVHARFFLSPFSDDDVVKSSLIDMYAKFGLPDYG 160

Query: 90  RDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVE 149
           R +F ++   NS+SW+ MISGY   G+  +A  LF+  P +++ AWTA+ISG ++ G   
Sbjct: 161 RAVFDSISSLNSISWTTMISGYARSGRKFEAFRLFRQTPYRNLFAWTALISGLVQSGN-- 218

Query: 150 NSWAEDGLKLLRMMIGLGIR-PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTT 208
                D   L   M   GI   +   LSSV+  C++L+  +LGKQ+H +V          
Sbjct: 219 ---GVDAFHLFVEMRHEGISVTDPLVLSSVVGACANLALWELGKQMHGVVITLGYESCLF 275

Query: 209 ALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEG 268
               LI MY KC DL  A  +F E+ RKDVV+W ++I G AQHG+ E+AL L+D+M   G
Sbjct: 276 ISNALIDMYAKCSDLVAAKYIFCEMCRKDVVSWTSIIVGTAQHGQAEEALALYDEMVLAG 335

Query: 269 MKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEA 328
           +KP+ +TFV L+ AC+HAGLV  G   F +MV D+GI+    HYTC++DL  R+G L EA
Sbjct: 336 VKPNEVTFVGLIHACSHAGLVSKGRTLFRTMVEDHGISPSLQHYTCLLDLFSRSGHLDEA 395

Query: 329 VDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAA 388
            +LI+ MP  P    +  LLS+C+ H    +A   A +L NL P + +  Y+ L+NIYA 
Sbjct: 396 ENLIRTMPVNPDEPTWAALLSSCKRHGNTQMAVRIADHLLNLKPEDPSS-YILLSNIYAG 454

Query: 389 MKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKR 448
              W+DV+++R  M      K PGYS I++G   H F +G+  HP    I   ++EL++ 
Sbjct: 455 AGMWEDVSKVRKLMMTLEAKKAPGYSCIDLGKGSHVFYAGETSHPMRDEIIGLMRELDEE 514

Query: 449 MKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDC 508
           M+  GY PD    LH + ++ KE+ L +HSE+LA+A+GL+K   GT IR+ KNLRVCGDC
Sbjct: 515 MRKRGYAPDTSSVLHDMDQQEKERQLFWHSERLAVAYGLLKAVPGTVIRIVKNLRVCGDC 574

Query: 509 HRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           H   K ISAI  REI VRD  R+HHFKDG CSC D+W
Sbjct: 575 HTVLKLISAITNREIYVRDAKRYHHFKDGNCSCNDFW 611



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/199 (24%), Positives = 89/199 (44%), Gaps = 33/199 (16%)

Query: 172 ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFL 231
           A SL S L   +  S L L K++H  + K+ L +       L++ Y KCG ++DA +LF 
Sbjct: 4   AQSLQSQLCSAARQSPL-LAKKLHAQIIKAGLNQHEPIPNTLLNAYGKCGLIQDALQLFD 62

Query: 232 EIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLV-- 289
            + R+D V W ++++      +  +AL +   +   G  PD   F +L+ AC + G++  
Sbjct: 63  ALPRRDPVAWASLLTACNLSNRPHRALSISRSLLSTGFHPDHFVFASLVKACANLGVLHV 122

Query: 290 ----DLGIQYF-----------DSMVNDYGIAAKPDH---------------YTCMVDLL 319
                +  ++F            S+++ Y     PD+               +T M+   
Sbjct: 123 KQGKQVHARFFLSPFSDDDVVKSSLIDMYAKFGLPDYGRAVFDSISSLNSISWTTMISGY 182

Query: 320 GRAGKLVEAVDLIKKMPFK 338
            R+G+  EA  L ++ P++
Sbjct: 183 ARSGRKFEAFRLFRQTPYR 201


>gi|15231970|ref|NP_187494.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207322|sp|Q9SR82.1|PP219_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g08820
 gi|6403507|gb|AAF07847.1|AC010871_23 unknown protein [Arabidopsis thaliana]
 gi|12322725|gb|AAG51349.1|AC012562_10 unknown protein; 90102-88045 [Arabidopsis thaliana]
 gi|332641162|gb|AEE74683.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 685

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 210/533 (39%), Positives = 306/533 (57%), Gaps = 15/533 (2%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRL---PIK-DTASWNTM 76
           G+L DA +LFD+IP   VV++  + S     S     A D F+++    +K D+     +
Sbjct: 160 GRLNDAHKLFDEIPDRSVVTWTALFSG-YTTSGRHREAIDLFKKMVEMGVKPDSYFIVQV 218

Query: 77  ISGFVQKKNMAKARDLFLAMPE----KNSVSWSAMISGYIECGQLDKAVELFKVAPVKSV 132
           +S  V   ++     +   M E    KNS   + +++ Y +CG+++KA  +F     K +
Sbjct: 219 LSACVHVGDLDSGEWIVKYMEEMEMQKNSFVRTTLVNLYAKCGKMEKARSVFDSMVEKDI 278

Query: 133 VAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGK 192
           V W+ MI GY       NS+ ++G++L   M+   ++P+  S+   L  C+ L +L LG+
Sbjct: 279 VTWSTMIQGY-----ASNSFPKEGIELFLQMLQENLKPDQFSIVGFLSSCASLGALDLGE 333

Query: 193 QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHG 252
               L+ +     +      LI MY KCG +    ++F E++ KD+V  NA ISG A++G
Sbjct: 334 WGISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFKEMKEKDIVIMNAAISGLAKNG 393

Query: 253 KGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY 312
             + +  +F + +  G+ PD  TF+ LL  C HAGL+  G+++F+++   Y +    +HY
Sbjct: 394 HVKLSFAVFGQTEKLGISPDGSTFLGLLCGCVHAGLIQDGLRFFNAISCVYALKRTVEHY 453

Query: 313 TCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNP 372
            CMVDL GRAG L +A  LI  MP +P   ++G LLS CR+ K   LAE     L  L P
Sbjct: 454 GCMVDLWGRAGMLDDAYRLICDMPMRPNAIVWGALLSGCRLVKDTQLAETVLKELIALEP 513

Query: 373 ANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVH 432
            NA G YVQL+NIY+   +WD+ A +R  M +  + K+PGYSWIE+   VHEF + D+ H
Sbjct: 514 WNA-GNYVQLSNIYSVGGRWDEAAEVRDMMNKKGMKKIPGYSWIELEGKVHEFLADDKSH 572

Query: 433 PELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPL 492
           P    I+ KL++L   M+L G+VP  EF    V EE KE++L +HSEKLA+A GLI    
Sbjct: 573 PLSDKIYAKLEDLGNEMRLMGFVPTTEFVFFDVEEEEKERVLGYHSEKLAVALGLISTDH 632

Query: 493 GTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           G  IRV KNLRVCGDCH   K IS I +REI+VRD  RFH F +G+CSC DYW
Sbjct: 633 GQVIRVVKNLRVCGDCHEVMKLISKITRREIVVRDNNRFHCFTNGSCSCNDYW 685



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 71/216 (32%), Positives = 108/216 (50%), Gaps = 12/216 (5%)

Query: 123 LFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGC 182
           LF      ++  + ++I+G+     V N    + L L   +   G+  +  +   VL  C
Sbjct: 67  LFSHTQFPNIFLYNSLINGF-----VNNHLFHETLDLFLSIRKHGLYLHGFTFPLVLKAC 121

Query: 183 SHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWN 242
           +  SS +LG  +H LV K     D  A+T L+S+Y   G L DA KLF EI  + VVTW 
Sbjct: 122 TRASSRKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWT 181

Query: 243 AMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG---IQYFDSM 299
           A+ SGY   G+  +A+ LF KM + G+KPDS   V +L AC H G +D G   ++Y + M
Sbjct: 182 ALFSGYTTSGRHREAIDLFKKMVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEM 241

Query: 300 VNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335
                   +    T +V+L  + GK+ +A  +   M
Sbjct: 242 EMQKNSFVR----TTLVNLYAKCGKMEKARSVFDSM 273



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 63/268 (23%), Positives = 103/268 (38%), Gaps = 39/268 (14%)

Query: 174 SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI 233
           +L SV    +HL      KQ+H  +    L  DT  +  L+         + +  LF   
Sbjct: 18  TLISVACTVNHL------KQIHVSLINHHLHHDTFLVNLLLKRTLFFRQTKYSYLLFSHT 71

Query: 234 QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGI 293
           Q  ++  +N++I+G+  +    + L LF  ++  G+     TF  +L AC  A    LGI
Sbjct: 72  QFPNIFLYNSLINGFVNNHLFHETLDLFLSIRKHGLYLHGFTFPLVLKACTRASSRKLGI 131

Query: 294 QYFDSMVN---DYGIAAK-----------------------PDH----YTCMVDLLGRAG 323
                +V    ++ +AA                        PD     +T +      +G
Sbjct: 132 DLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSG 191

Query: 324 KLVEAVDLIKK---MPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYV 380
           +  EA+DL KK   M  KP       +LSAC     LD  E+    +  +     +    
Sbjct: 192 RHREAIDLFKKMVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEMEMQKNSFVRT 251

Query: 381 QLANIYAAMKKWDDVARIRLSMKENNVV 408
            L N+YA   K +    +  SM E ++V
Sbjct: 252 TLVNLYAKCGKMEKARSVFDSMVEKDIV 279


>gi|147770365|emb|CAN78152.1| hypothetical protein VITISV_040250 [Vitis vinifera]
          Length = 606

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 211/518 (40%), Positives = 304/518 (58%), Gaps = 24/518 (4%)

Query: 6   TVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCIL---LNSDD-------- 54
           T  WNS L   A+    + DA  LF ++ Q DV       S +L   LN  D        
Sbjct: 93  TFVWNSCLKALAEGDSPI-DAIMLFYRLRQYDVCPDTFTCSSVLRACLNLLDLSNGRILH 151

Query: 55  -VVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE 113
            VV    F   L ++     N ++  +     M +AR LF  MP+++ V+W+ MI+  I+
Sbjct: 152 GVVEKVGFRSNLYLQ-----NMIVHLYASCGEMGEARLLFEKMPQRDVVTWNIMIAQLIK 206

Query: 114 CGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNAS 173
            G  + A +LF   P ++V +WT+MI+GY++ G      A++ + L   M   G++ N  
Sbjct: 207 QGDHEGAYDLFSRMPERNVRSWTSMIAGYVQCGK-----AKEAIHLFAKMEEAGVKCNEV 261

Query: 174 SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI 233
           ++ +VL  C+ L +L LG ++H+   +    ++      LI MY KCG LE+ACK+F E+
Sbjct: 262 TVVAVLAACADLGALDLGMRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEM 321

Query: 234 QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGI 293
           + + VV+W+AMI G A HG+ E+ALRLF  M   G++P+ +TF+ LL AC+H GL+  G 
Sbjct: 322 EERTVVSWSAMIGGLAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGR 381

Query: 294 QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRV 353
           ++F SM  DYGI  + +HY CMVDLL RAG L EA + I  MP KP   ++G LL ACRV
Sbjct: 382 RFFASMTRDYGIIPQIEHYGCMVDLLSRAGLLHEAHEFILNMPMKPNGVVWGALLGACRV 441

Query: 354 HKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGY 413
           HK +++AE A  +L  L+P N  G YV L+NIYA   +W+D AR+R  MK+  V K PG+
Sbjct: 442 HKNVEMAEEAIKHLLELDPLN-DGYYVVLSNIYAEAGRWEDTARVRKFMKDRQVKKTPGW 500

Query: 414 SWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQL 473
           S I V  VVHEF +G+  HP+   I ++ +EL + M+L GYVP+    L  + E  K + 
Sbjct: 501 SSITVDGVVHEFVAGEESHPDTEQIFQRWEELLEEMRLKGYVPNTSVVLLDIEEGEKVKF 560

Query: 474 LLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRA 511
           +  HSEKLA+ FGL+  P  TPIR+ KNLR+C DCH A
Sbjct: 561 VSRHSEKLALVFGLMNTPAETPIRIMKNLRICEDCHSA 598



 Score = 42.0 bits (97), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 80/177 (45%), Gaps = 16/177 (9%)

Query: 168 IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKS--PLCKDTTALTPLISMYCKCG---D 222
           ++P +S    + L  +  S  +L +QVH  + K+  PL     ++ PL  +   C     
Sbjct: 22  VKPQSSETLKIDLLRNFNSPFEL-RQVHAQIIKTNAPL-----SILPLTRVGLVCAFTPS 75

Query: 223 LEDACKLF--LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 280
              A ++F  +E Q+ +   WN+ +   A+      A+ LF +++   + PD+ T  ++L
Sbjct: 76  FHYAQQIFECVEKQKPETFVWNSCLKALAEGDSPIDAIMLFYRLRQYDVCPDTFTCSSVL 135

Query: 281 LACNHAGLVDLGI-QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 336
            AC    L+DL   +    +V   G  +       +V L    G++ EA  L +KMP
Sbjct: 136 RAC--LNLLDLSNGRILHGVVEKVGFRSNLYLQNMIVHLYASCGEMGEARLLFEKMP 190


>gi|15228590|ref|NP_187008.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207453|sp|Q9SS60.1|PP210_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g03580
 gi|6091764|gb|AAF03474.1|AC009327_13 hypothetical protein [Arabidopsis thaliana]
 gi|28393735|gb|AAO42278.1| unknown protein [Arabidopsis thaliana]
 gi|29824355|gb|AAP04138.1| unknown protein [Arabidopsis thaliana]
 gi|332640438|gb|AEE73959.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 882

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 221/621 (35%), Positives = 336/621 (54%), Gaps = 82/621 (13%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQ--PDVVS------------------ 40
           M+V+ +V++N+++ G+ K     +  +   + + Q  PD+++                  
Sbjct: 268 MDVRDSVSYNTMICGYLKLEMVEESVRMFLENLDQFKPDLLTVSSVLRACGHLRDLSLAK 327

Query: 41  --YNIMLSC----------ILLN----SDDVVAAFDFFQRLPIKDTASWNTMISGFVQKK 84
             YN ML            IL++      D++ A D F  +  KDT SWN++ISG++Q  
Sbjct: 328 YIYNYMLKAGFVLESTVRNILIDVYAKCGDMITARDVFNSMECKDTVSWNSIISGYIQSG 387

Query: 85  NMAKARDLF---LAMPEKN---------SVSW---------------------------S 105
           ++ +A  LF   + M E+          SVS                            +
Sbjct: 388 DLMEAMKLFKMMMIMEEQADHITYLMLISVSTRLADLKFGKGLHSNGIKSGICIDLSVSN 447

Query: 106 AMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIG 165
           A+I  Y +CG++  ++++F        V W  +IS  ++FG         GL++   M  
Sbjct: 448 ALIDMYAKCGEVGDSLKIFSSMGTGDTVTWNTVISACVRFGDFAT-----GLQVTTQMRK 502

Query: 166 LGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLED 225
             + P+ ++    L  C+ L++ +LGK++H  + +     +      LI MY KCG LE+
Sbjct: 503 SEVVPDMATFLVTLPMCASLAAKRLGKEIHCCLLRFGYESELQIGNALIEMYSKCGCLEN 562

Query: 226 ACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNH 285
           + ++F  + R+DVVTW  MI  Y  +G+GEKAL  F  M+  G+ PDS+ F+A++ AC+H
Sbjct: 563 SSRVFERMSRRDVVTWTGMIYAYGMYGEGEKALETFADMEKSGIVPDSVVFIAIIYACSH 622

Query: 286 AGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFG 345
           +GLVD G+  F+ M   Y I    +HY C+VDLL R+ K+ +A + I+ MP KP  +I+ 
Sbjct: 623 SGLVDEGLACFEKMKTHYKIDPMIEHYACVVDLLSRSQKISKAEEFIQAMPIKPDASIWA 682

Query: 346 TLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKEN 405
           ++L ACR    ++ AE  +  +  LNP +  G  +  +N YAA++KWD V+ IR S+K+ 
Sbjct: 683 SVLRACRTSGDMETAERVSRRIIELNP-DDPGYSILASNAYAALRKWDKVSLIRKSLKDK 741

Query: 406 NVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPD-LEFALHA 464
           ++ K PGYSWIEVG  VH F SGD   P+  +I++ L+ L   M   GY+PD  E + + 
Sbjct: 742 HITKNPGYSWIEVGKNVHVFSSGDDSAPQSEAIYKSLEILYSLMAKEGYIPDPREVSQNL 801

Query: 465 VGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREII 524
             EE K +L+  HSE+LAIAFGL+    GTP++V KNLRVCGDCH  TK IS I  REI+
Sbjct: 802 EEEEEKRRLICGHSERLAIAFGLLNTEPGTPLQVMKNLRVCGDCHEVTKLISKIVGREIL 861

Query: 525 VRDTTRFHHFKDGTCSCGDYW 545
           VRD  RFH FKDGTCSC D W
Sbjct: 862 VRDANRFHLFKDGTCSCKDRW 882



 Score =  108 bits (269), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 98/426 (23%), Positives = 177/426 (41%), Gaps = 88/426 (20%)

Query: 4   KTTVNWNSVLAGFAKQ---------RGKLKDAQELFDKIPQPDVVSY----------NIM 44
           K    WNS++  F+K           GKL++++   DK   P V+            +++
Sbjct: 69  KNVYLWNSIIRAFSKNGLFPEALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDLV 128

Query: 45  LSCIL---LNSDDVVA---------------AFDFFQRLPIKDTASWNTMISGFVQKKNM 86
              IL     SD  V                A   F  +P++D  SWN++ISG+      
Sbjct: 129 YEQILDMGFESDLFVGNALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLISGYSSHGYY 188

Query: 87  AKARDLFLAM------PEKNSVS---------------------------------WSAM 107
            +A +++  +      P+  +VS                                  + +
Sbjct: 189 EEALEIYHELKNSWIVPDSFTVSSVLPAFGNLLVVKQGQGLHGFALKSGVNSVVVVNNGL 248

Query: 108 ISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGL- 166
           ++ Y++  +   A  +F    V+  V++  MI GY+K   VE S        +RM +   
Sbjct: 249 VAMYLKFRRPTDARRVFDEMDVRDSVSYNTMICGYLKLEMVEES--------VRMFLENL 300

Query: 167 -GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLED 225
              +P+  ++SSVL  C HL  L L K ++  + K+    ++T    LI +Y KCGD+  
Sbjct: 301 DQFKPDLLTVSSVLRACGHLRDLSLAKYIYNYMLKAGFVLESTVRNILIDVYAKCGDMIT 360

Query: 226 ACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNH 285
           A  +F  ++ KD V+WN++ISGY Q G   +A++LF  M     + D IT++ L+     
Sbjct: 361 ARDVFNSMECKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISVSTR 420

Query: 286 AGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFG 345
              +  G     + +   GI         ++D+  + G++ +++ +   M        + 
Sbjct: 421 LADLKFGKGLHSNGIKS-GICIDLSVSNALIDMYAKCGEVGDSLKIFSSMG-TGDTVTWN 478

Query: 346 TLLSAC 351
           T++SAC
Sbjct: 479 TVISAC 484



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 90/411 (21%), Positives = 181/411 (44%), Gaps = 83/411 (20%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCIL----------- 49
           M V+  V+WNS+++G++   G  ++A E++ ++    +V  +  +S +L           
Sbjct: 167 MPVRDLVSWNSLISGYSSH-GYYEEALEIYHELKNSWIVPDSFTVSSVLPAFGNLLVVKQ 225

Query: 50  -----------------LNSDDVVAAFDFFQR----------LPIKDTASWNTMISGFVQ 82
                            + ++ +VA +  F+R          + ++D+ S+NTMI G+++
Sbjct: 226 GQGLHGFALKSGVNSVVVVNNGLVAMYLKFRRPTDARRVFDEMDVRDSVSYNTMICGYLK 285

Query: 83  KKNMAKA----------------------------RDLFLAMPEKN----------SVSW 104
            + + ++                            RDL LA    N          S   
Sbjct: 286 LEMVEESVRMFLENLDQFKPDLLTVSSVLRACGHLRDLSLAKYIYNYMLKAGFVLESTVR 345

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI 164
           + +I  Y +CG +  A ++F     K  V+W ++ISGY++ G +      + +KL +MM+
Sbjct: 346 NILIDVYAKCGDMITARDVFNSMECKDTVSWNSIISGYIQSGDL-----MEAMKLFKMMM 400

Query: 165 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 224
            +  + +  +   ++   + L+ L+ GK +H    KS +C D +    LI MY KCG++ 
Sbjct: 401 IMEEQADHITYLMLISVSTRLADLKFGKGLHSNGIKSGICIDLSVSNALIDMYAKCGEVG 460

Query: 225 DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 284
           D+ K+F  +   D VTWN +IS   + G     L++  +M+   + PD  TF+  L  C 
Sbjct: 461 DSLKIFSSMGTGDTVTWNTVISACVRFGDFATGLQVTTQMRKSEVVPDMATFLVTLPMCA 520

Query: 285 HAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335
                 LG +    ++  +G  ++      ++++  + G L  +  + ++M
Sbjct: 521 SLAAKRLGKEIHCCLLR-FGYESELQIGNALIEMYSKCGCLENSSRVFERM 570



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 88/168 (52%), Gaps = 5/168 (2%)

Query: 125 KVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSH 184
           +V+P K+V  W ++I  + K     N    + L+    +    + P+  +  SV+  C+ 
Sbjct: 64  RVSPAKNVYLWNSIIRAFSK-----NGLFPEALEFYGKLRESKVSPDKYTFPSVIKACAG 118

Query: 185 LSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAM 244
           L   ++G  V++ +       D      L+ MY + G L  A ++F E+  +D+V+WN++
Sbjct: 119 LFDAEMGDLVYEQILDMGFESDLFVGNALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSL 178

Query: 245 ISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 292
           ISGY+ HG  E+AL ++ ++K+  + PDS T  ++L A  +  +V  G
Sbjct: 179 ISGYSSHGYYEEALEIYHELKNSWIVPDSFTVSSVLPAFGNLLVVKQG 226


>gi|242092564|ref|XP_002436772.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
 gi|241914995|gb|EER88139.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
          Length = 825

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 210/533 (39%), Positives = 304/533 (57%), Gaps = 15/533 (2%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G ++DA+ +F+ IP  DV+ ++ ++S     S     AF+ F R+           +SG 
Sbjct: 300 GYIEDARTVFEIIPHDDVILWSFLIS-RYAQSYQNEQAFEMFLRMMRSSVVPNEFSLSGV 358

Query: 81  VQK-KNMA------KARDLFLAMP-EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSV 132
           +Q   N+A      +  +L + +  E      +A++  Y +C  ++ ++E+F+     + 
Sbjct: 359 LQACANVAFLDLGQQIHNLVIKLGYESELFVGNALMDVYAKCRNMENSLEIFRSLRDANE 418

Query: 133 VAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGK 192
           V+W  +I GY + G+     AED L + + M    +     + SSVL  C++ +S++   
Sbjct: 419 VSWNTIIVGYCQSGF-----AEDALSVFQEMRAAHVLSTQVTFSSVLRACANTASIKHTV 473

Query: 193 QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHG 252
           Q+H L+ KS    DT     LI  Y KCG + DA K+F  I + DVV+WNA+ISGYA HG
Sbjct: 474 QIHSLIEKSTFNNDTIVCNSLIDTYAKCGCIRDALKVFESIIQCDVVSWNAIISGYALHG 533

Query: 253 KGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY 312
           +   AL LF++M     KP+ +TFVALL  C   GLV+ G+  F+SM  D+ I    DHY
Sbjct: 534 RATDALELFNRMNKSDTKPNDVTFVALLSVCGSTGLVNQGLSLFNSMTMDHRIKPSMDHY 593

Query: 313 TCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNP 372
           TC+V LLGRAG+L +A+  I  +P  P P ++  LLS+C VHK + L +F+A  +  + P
Sbjct: 594 TCIVRLLGRAGRLNDALKFIGDIPSTPSPMVWRALLSSCVVHKNVALGKFSAEKVLEIEP 653

Query: 373 ANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVH 432
            +    YV L+N+YAA    D VA +R SM+   V K  G SW+E+   VH F  G   H
Sbjct: 654 QDETT-YVLLSNMYAAAGILDQVALLRKSMRNIGVKKEVGLSWVEIKGEVHAFSVGSADH 712

Query: 433 PELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPL 492
           P++  I+  L+ L  +    GYVPD+   LH V EE K ++L  HSE+LA+A+GL   P 
Sbjct: 713 PDMRIINAMLEWLNLKASREGYVPDINVVLHDVDEEEKARMLWVHSERLALAYGLSMTPP 772

Query: 493 GTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           G PIR+ KNLR C DCH   K IS I +REI+VRD  RFHHF +G CSCGDYW
Sbjct: 773 GHPIRIMKNLRSCLDCHTVFKVISKIVQREIVVRDINRFHHFDEGICSCGDYW 825



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 87/298 (29%), Positives = 138/298 (46%), Gaps = 14/298 (4%)

Query: 11  SVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDT 70
           +VL     + G L  A+ LFD +P+ ++VS+  ++    L      AA   F+RL  +  
Sbjct: 88  NVLLNLYAKLGPLAAARRLFDGMPERNMVSFVTLVQGYALRGGFEEAA-GLFRRLQREGH 146

Query: 71  ASWNTMISGFVQKKNMAKARDLFLAMP--------EKNSVSWSAMISGYIECGQLDKAVE 122
              + +++  ++      A  L   +         ++N+   S++I  Y  CG +  A  
Sbjct: 147 EVNHFVLTTILKVLVAMDAPGLTCCIHACACKLGHDRNAFVGSSLIDAYSLCGAVSHARC 206

Query: 123 LFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGC 182
           +F     K  V WTAM+S Y      EN   ED L     M   G +PN   L+SVL   
Sbjct: 207 VFDGIIWKDAVTWTAMVSCYS-----ENDIPEDALNTFSKMRMAGAKPNPFVLTSVLKAA 261

Query: 183 SHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWN 242
             LSS  LGK +H    K+    +      L+ MY KCG +EDA  +F  I   DV+ W+
Sbjct: 262 VCLSSAVLGKGIHGCAVKTLCDTEPHVGGALLDMYAKCGYIEDARTVFEIIPHDDVILWS 321

Query: 243 AMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV 300
            +IS YAQ  + E+A  +F +M    + P+  +   +L AC +   +DLG Q  + ++
Sbjct: 322 FLISRYAQSYQNEQAFEMFLRMMRSSVVPNEFSLSGVLQACANVAFLDLGQQIHNLVI 379



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 73/277 (26%), Positives = 116/277 (41%), Gaps = 55/277 (19%)

Query: 69  DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAP 128
           DT   N +++ + +   +A AR LF  MPE+N VS+  ++ GY   G  ++A  LF+   
Sbjct: 83  DTFCANVLLNLYAKLGPLAAARRLFDGMPERNMVSFVTLVQGYALRGGFEEAAGLFR--- 139

Query: 129 VKSVVAWTAMISGYMKFGYVENSWAEDG-LKLLRMMIGLGIRPNASSLSSVLLGCSHLSS 187
                          + G+  N +     LK+L  M   G           L  C H  +
Sbjct: 140 ------------RLQREGHEVNHFVLTTILKVLVAMDAPG-----------LTCCIHACA 176

Query: 188 LQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISG 247
            +LG   +  V  S           LI  Y  CG +  A  +F  I  KD VTW AM+S 
Sbjct: 177 CKLGHDRNAFVGSS-----------LIDAYSLCGAVSHARCVFDGIIWKDAVTWTAMVSC 225

Query: 248 YAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA--CNHAGLVDLGIQYFDSMVNDYGI 305
           Y+++   E AL  F KM+  G KP+     ++L A  C  + ++  GI         +G 
Sbjct: 226 YSENDIPEDALNTFSKMRMAGAKPNPFVLTSVLKAAVCLSSAVLGKGI---------HGC 276

Query: 306 AAK------PDHYTCMVDLLGRAGKLVEAVDLIKKMP 336
           A K      P     ++D+  + G + +A  + + +P
Sbjct: 277 AVKTLCDTEPHVGGALLDMYAKCGYIEDARTVFEIIP 313



 Score = 47.4 bits (111), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 42/183 (22%), Positives = 81/183 (44%), Gaps = 22/183 (12%)

Query: 152 WAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVH-QLVFKSPLCK-DTTA 209
           W +D L  L +      + ++ + + +L  C      + G+ VH ++V +  + + DT  
Sbjct: 32  WLDDELASLALP-----KLDSYACARLLQRCIARGDARAGRAVHARVVQRGGVAQLDTFC 86

Query: 210 LTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGM 269
              L+++Y K G L  A +LF  +  +++V++  ++ GYA  G  E+A  LF +++ EG 
Sbjct: 87  ANVLLNLYAKLGPLAAARRLFDGMPERNMVSFVTLVQGYALRGGFEEAAGLFRRLQREGH 146

Query: 270 KPDSITFVAL-----------LLACNHAGLVDLGIQ----YFDSMVNDYGIAAKPDHYTC 314
           + +      +           L  C HA    LG         S+++ Y +     H  C
Sbjct: 147 EVNHFVLTTILKVLVAMDAPGLTCCIHACACKLGHDRNAFVGSSLIDAYSLCGAVSHARC 206

Query: 315 MVD 317
           + D
Sbjct: 207 VFD 209


>gi|115486527|ref|NP_001068407.1| Os11g0661000 [Oryza sativa Japonica Group]
 gi|108864631|gb|ABG22570.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113645629|dbj|BAF28770.1| Os11g0661000 [Oryza sativa Japonica Group]
 gi|215694601|dbj|BAG89792.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215701272|dbj|BAG92696.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 610

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 218/578 (37%), Positives = 325/578 (56%), Gaps = 47/578 (8%)

Query: 8   NWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLS----------------CIL-- 49
           N  ++++ +AK R  L DA  LFD+ P+ D+  Y+ +L+                C+L  
Sbjct: 40  NPAALVSAYAKSR-LLPDALHLFDETPRRDIYIYSSLLTAVSHSASPELALPILRCMLSA 98

Query: 50  --LNSDDVV--AAFDFFQRLPIK-----------------DTASWNTMISGFVQKKNMAK 88
             L+ D  V  +    F RL  +                 D    ++++  + +  +   
Sbjct: 99  DALHPDHFVISSVASVFARLRSRRLGRQLHAHFVVSPYNGDDVVKSSLVDMYCKCGSPDD 158

Query: 89  ARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYV 148
            R +F +M  KNSV W+A++SGY   G+ ++A++LF+  P +++ AWTA+ISG +  G  
Sbjct: 159 GRKVFDSMSAKNSVVWTALVSGYASNGRSEEALQLFRSMPGRNLFAWTALISGLVNTGE- 217

Query: 149 ENSWAEDGLKLLRMMIGLGIR-PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDT 207
               +   ++L   M   G+R  +A  LS V+ G + L++  LG+Q+H    +     + 
Sbjct: 218 ----SVGAVELFVEMRRDGVRIDDAFVLSIVIGGSADLAAFVLGRQLHGSTMRLGFLSNM 273

Query: 208 TALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE 267
                LI MY KC D+  A ++F  I  +DV++W  M+ G AQHG+ E+AL L+D+M   
Sbjct: 274 IVGNALIDMYSKCSDILSAREVFEGITFRDVISWTTMVVGEAQHGRAEEALALYDRMVLA 333

Query: 268 GMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVE 327
           G KP+ +TFV L+ AC+HAGLV  G Q F+SM N+YGI  +  HYTC +DLL R+G L+E
Sbjct: 334 GAKPNEVTFVGLIYACSHAGLVQKGRQLFESMKNEYGITPRLQHYTCYLDLLSRSGHLLE 393

Query: 328 AVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYA 387
           A +L+  MP++P  A +G LLSAC  +K  ++    +  L  L P +++  Y+ L+N+YA
Sbjct: 394 AEELMTTMPYEPDEATWGALLSACTKYKDAEMCIRISDKLLELRPKDSS-TYILLSNVYA 452

Query: 388 AMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEK 447
              KWD VA++R  M    + K PGYSWIE G     F +G+        I   L+E+  
Sbjct: 453 VNGKWDSVAKVRKCMIGLEIRKEPGYSWIEAGREFRLFHAGEVPLDVREEIMVFLEEMVL 512

Query: 448 RMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGD 507
            M+  GYVPD    +H + E  KE  L  HSE+LA+AFGLIK P G+ IRV KNLRVC D
Sbjct: 513 EMRKRGYVPDTSSVMHDLEESEKEHHLFLHSERLAVAFGLIKSPPGSVIRVVKNLRVCVD 572

Query: 508 CHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           CH   K IS I  R+I+VRD++RFHHF+ G CSC ++W
Sbjct: 573 CHTVMKLISEITHRKIVVRDSSRFHHFEGGKCSCSEFW 610



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 75/297 (25%), Positives = 143/297 (48%), Gaps = 33/297 (11%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M+ K +V W ++++G+A   G+ ++A +LF  +P  ++ ++  ++S  L+N+ + V A +
Sbjct: 166 MSAKNSVVWTALVSGYASN-GRSEEALQLFRSMPGRNLFAWTALISG-LVNTGESVGAVE 223

Query: 61  FFQRL-----PIKDTASWNTMISGFVQKKNMAKARDLFLAMPE----KNSVSWSAMISGY 111
            F  +      I D    + +I G          R L  +        N +  +A+I  Y
Sbjct: 224 LFVEMRRDGVRIDDAFVLSIVIGGSADLAAFVLGRQLHGSTMRLGFLSNMIVGNALIDMY 283

Query: 112 IECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPN 171
            +C  +  A E+F+    + V++WT M+ G  + G      AE+ L L   M+  G +PN
Sbjct: 284 SKCSDILSAREVFEGITFRDVISWTTMVVGEAQHGR-----AEEALALYDRMVLAGAKPN 338

Query: 172 ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYC-------KCGDLE 224
             +   ++  CSH   +Q G+Q    +F+S   K+   +TP +  Y        + G L 
Sbjct: 339 EVTFVGLIYACSHAGLVQKGRQ----LFES--MKNEYGITPRLQHYTCYLDLLSRSGHLL 392

Query: 225 DACKLFLEIQRK-DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKP-DSITFVAL 279
           +A +L   +  + D  TW A++S   ++   E  +R+ DK+ +  ++P DS T++ L
Sbjct: 393 EAEELMTTMPYEPDEATWGALLSACTKYKDAEMCIRISDKLLE--LRPKDSSTYILL 447


>gi|449494077|ref|XP_004159440.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g34160-like [Cucumis sativus]
          Length = 576

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 207/536 (38%), Positives = 307/536 (57%), Gaps = 19/536 (3%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G L  A  +F  IP P    +N ++    L+SD   A F +            + +   F
Sbjct: 49  GDLSYALHIFRYIPYPSTNDWNAVIRGTALSSDPANAVFWYRAMAASNGLHRIDALTCSF 108

Query: 81  VQK---KNMAKARDLFLAMP------EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKS 131
             K   + +A++  + L           + +  + ++  Y + G LD A +LF   P   
Sbjct: 109 ALKACARALARSEAIQLHSQLLRFGFNADVLLQTTLLDAYAKIGDLDLAQKLFDEMPQPD 168

Query: 132 VVAWTAMISGYMKFGYVENSWAEDGLKLL-RMMIGLGIRPNASSLSSVLLGCSHLSSLQL 190
           + +W A+I+G+      + S   D +    RM +   +RPNA ++   LL CS L +L+ 
Sbjct: 169 IASWNALIAGF-----AQGSRPADAIMTFKRMKVDGNLRPNAVTVQGALLACSQLGALKE 223

Query: 191 GKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ-RKDVVTWNAMISGYA 249
           G+ VH+ + +  L  +      +I MY KCG ++ A  +F  ++  K ++TWN MI  +A
Sbjct: 224 GESVHKYIVEEKLDSNVQVCNVVIDMYAKCGSMDKAYWVFENMRCDKSLITWNTMIMAFA 283

Query: 250 QHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKP 309
            HG G KAL LF+K+   GM PD+++++A+L ACNHAGLV+ G++ F+SM    G+    
Sbjct: 284 MHGDGHKALDLFEKLGRSGMSPDAVSYLAVLCACNHAGLVEDGLKLFNSMTQR-GLEPNI 342

Query: 310 DHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFN 369
            HY  MVDLLGRAG+L EA D++  +PF P   ++ TLL ACR +  +++AE A+  L  
Sbjct: 343 KHYGSMVDLLGRAGRLKEAYDIVSSLPF-PNMVLWQTLLGACRTYGDVEMAELASRKLVE 401

Query: 370 LNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGD 429
           +    + G +V L+N+YAA ++WDDV R+R +M+  +V K PG+S+IE+   +++F +GD
Sbjct: 402 MGFI-SCGXFVLLSNVYAARQRWDDVGRVRDAMRRRDVKKTPGFSYIEIKGKMYKFVNGD 460

Query: 430 RVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIK 489
           + H     I+ KL E+  R+K  GY  D    LH +G+E KE  L +HSEKLA+AFGL  
Sbjct: 461 QSHSSCREIYAKLDEINLRIKAYGYSADTSNVLHDIGDEDKENALCYHSEKLAVAFGLTC 520

Query: 490 VPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
              GTPI+V KNLR+CGDCH   K IS I  REIIVRD TRFH FK+G CSC DYW
Sbjct: 521 TEEGTPIQVIKNLRICGDCHVVIKLISKIYIREIIVRDRTRFHRFKEGLCSCKDYW 576



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 58/260 (22%), Positives = 111/260 (42%), Gaps = 48/260 (18%)

Query: 8   NWNSVLAGFAKQRGKLKDAQELFDKIP-----QPDVVSYN-IMLSCILLNSDDVVAAFDF 61
           +WN+++AGFA Q  +  DA   F ++      +P+ V+    +L+C  L +         
Sbjct: 171 SWNALIAGFA-QGSRPADAIMTFKRMKVDGNLRPNAVTVQGALLACSQLGA--------- 220

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAV 121
                +K+  S +  I   V++K             + N    + +I  Y +CG +DKA 
Sbjct: 221 -----LKEGESVHKYI---VEEK------------LDSNVQVCNVVIDMYAKCGSMDKAY 260

Query: 122 ELFKVAPV-KSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGL---GIRPNASSLSS 177
            +F+     KS++ W  MI  +   G        DG K L +   L   G+ P+A S  +
Sbjct: 261 WVFENMRCDKSLITWNTMIMAFAMHG--------DGHKALDLFEKLGRSGMSPDAVSYLA 312

Query: 178 VLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKD 237
           VL  C+H   ++ G ++   + +  L  +      ++ +  + G L++A  +   +   +
Sbjct: 313 VLCACNHAGLVEDGLKLFNSMTQRGLEPNIKHYGSMVDLLGRAGRLKEAYDIVSSLPFPN 372

Query: 238 VVTWNAMISGYAQHGKGEKA 257
           +V W  ++     +G  E A
Sbjct: 373 MVLWQTLLGACRTYGDVEMA 392


>gi|242055215|ref|XP_002456753.1| hypothetical protein SORBIDRAFT_03g041980 [Sorghum bicolor]
 gi|241928728|gb|EES01873.1| hypothetical protein SORBIDRAFT_03g041980 [Sorghum bicolor]
          Length = 521

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 191/444 (43%), Positives = 275/444 (61%), Gaps = 9/444 (2%)

Query: 105 SAMISGY--IEC-GQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLR 161
           +A++  Y  + C G    A  +F   P + VV WT++++G  + G    +     ++   
Sbjct: 84  NALVDAYARLPCAGGAATARAVFDEMPRRDVVTWTSLLTGLARAGAHAAA-----VRAYH 138

Query: 162 MMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCG 221
            M+  G++ +  ++++VL  C+  ++L +G+ VH       LC   +    L+SMY K G
Sbjct: 139 GMVAAGVQTDEFAVAAVLSSCAGSTALDVGRSVHAAAVHLGLCPFRSVGNSLVSMYAKTG 198

Query: 222 DLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLL 281
            L DA  +F  +  +  +TW A+I GYAQ+G+G ++L ++  M   G +PD +TF+ LL 
Sbjct: 199 ALHDARAVFDAMPARCTITWTALIVGYAQNGRGRRSLEVYTDMVRSGCRPDYVTFIGLLF 258

Query: 282 ACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQP 341
           AC+HAGLVD G  +F SM  DYGIA  PDHY CMVDLLGRAG+L EA+DL+ +   +   
Sbjct: 259 ACSHAGLVDAGRDHFRSMAVDYGIAPGPDHYACMVDLLGRAGRLDEAMDLLNRSSTELDA 318

Query: 342 AIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLS 401
            ++ +LL ACRVH+  +LAE AA  ++ L+P +A   YV L+N+Y+  ++W DVARIR  
Sbjct: 319 TVWKSLLGACRVHRNAELAERAAEMVWRLDPTDAVP-YVMLSNLYSRARRWGDVARIRAL 377

Query: 402 MKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFA 461
           MK   + K PG SW+ V  V H F   DR HP    I+ K++E+ +R++  GYVPD ++A
Sbjct: 378 MKARGITKEPGCSWVGVNGVTHLFHVEDRGHPRAAEIYRKVEEMTERIRAEGYVPDTDWA 437

Query: 462 LHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKR 521
           L     E +E+ L +HSE+LA+AFGL+ VP   PIRVFKNLRVCGDCH A K ++    R
Sbjct: 438 LQDEAPEGRERGLAYHSERLAVAFGLLAVPAAAPIRVFKNLRVCGDCHTAIKMVAKAYGR 497

Query: 522 EIIVRDTTRFHHFKDGTCSCGDYW 545
            II+RD   FHH KDG CSCGDYW
Sbjct: 498 VIILRDANCFHHMKDGECSCGDYW 521


>gi|224111152|ref|XP_002315764.1| predicted protein [Populus trichocarpa]
 gi|222864804|gb|EEF01935.1| predicted protein [Populus trichocarpa]
          Length = 452

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 196/457 (42%), Positives = 281/457 (61%), Gaps = 6/457 (1%)

Query: 89  ARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYV 148
           A+ LF  +  +N V  +AMISGY   G+++ A  +F     K +V W+AMISGY      
Sbjct: 2   AQKLFTKISSRNLVVLTAMISGYSRVGRVEDARLIFDQMEEKDLVCWSAMISGY-----A 56

Query: 149 ENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTT 208
           E+   ++ L L   M   GI+P+  ++ SV+  C+ L  L   K +H  V K+ L     
Sbjct: 57  ESDKPQEALNLFSEMQVFGIKPDQVTILSVISACARLGVLDRAKWIHMYVDKNGLGGALP 116

Query: 209 ALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEG 268
               LI MY KCG+L  A  +F ++Q ++V++W +MI+ +A HG    AL+ F +MKDE 
Sbjct: 117 VNNALIDMYAKCGNLGAARGVFEKMQSRNVISWTSMINAFAIHGDASNALKFFYQMKDEN 176

Query: 269 MKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEA 328
           +KP+ +TFV +L AC+HAGLV+ G + F SM N++ I  K +HY CMVDL GRA  L +A
Sbjct: 177 IKPNGVTFVGVLYACSHAGLVEEGRRTFASMTNEHNITPKHEHYGCMVDLFGRANLLRDA 236

Query: 329 VDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAA 388
           ++L++ MP  P   I+G+L++AC++H   +L EFAA  +  L P +  G  VQL+NIYA 
Sbjct: 237 LELVETMPLAPNVVIWGSLMAACQIHGENELGEFAAKQVLELEP-DHDGALVQLSNIYAK 295

Query: 389 MKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKR 448
            ++W DV  +R  MK+  + K  G S IE+   V+EF   D+ H +   I+EKL E+ K 
Sbjct: 296 DRRWQDVGELRNLMKQRGISKERGCSRIELNNQVYEFVMADKKHKQADKIYEKLDEVVKE 355

Query: 449 MKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDC 508
           +KL GY P+    L  V EE K++++L+HSEKLA+ +GL+    G+ IR+ KNLRVC DC
Sbjct: 356 LKLVGYTPNTRSVLVDVEEEGKKEVVLWHSEKLALCYGLMGEGKGSCIRIVKNLRVCEDC 415

Query: 509 HRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           H   K +S +   EIIVRD TRFHH+K G CSC DYW
Sbjct: 416 HTFIKLVSKVYGMEIIVRDRTRFHHYKAGVCSCNDYW 452



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 58/263 (22%), Positives = 128/263 (48%), Gaps = 19/263 (7%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQ 63
           +  V   ++++G+++  G+++DA+ +FD++ + D+V ++ M+S     SD    A + F 
Sbjct: 12  RNLVVLTAMISGYSRV-GRVEDARLIFDQMEEKDLVCWSAMISG-YAESDKPQEALNLFS 69

Query: 64  RLPI----KDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWS-----AMISGYIEC 114
            + +     D  +  ++IS   +   + +A+ + + + +KN +  +     A+I  Y +C
Sbjct: 70  EMQVFGIKPDQVTILSVISACARLGVLDRAKWIHMYV-DKNGLGGALPVNNALIDMYAKC 128

Query: 115 GQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASS 174
           G L  A  +F+    ++V++WT+MI+ +   G   N+     LK    M    I+PN  +
Sbjct: 129 GNLGAARGVFEKMQSRNVISWTSMINAFAIHGDASNA-----LKFFYQMKDENIKPNGVT 183

Query: 175 LSSVLLGCSHLSSLQLGKQVH-QLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI 233
              VL  CSH   ++ G++    +  +  +         ++ ++ +   L DA +L   +
Sbjct: 184 FVGVLYACSHAGLVEEGRRTFASMTNEHNITPKHEHYGCMVDLFGRANLLRDALELVETM 243

Query: 234 Q-RKDVVTWNAMISGYAQHGKGE 255
               +VV W ++++    HG+ E
Sbjct: 244 PLAPNVVIWGSLMAACQIHGENE 266


>gi|414883627|tpg|DAA59641.1| TPA: hypothetical protein ZEAMMB73_113196 [Zea mays]
          Length = 637

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 209/533 (39%), Positives = 309/533 (57%), Gaps = 21/533 (3%)

Query: 28  ELFDKIPQPDVVSYNIMLSCILLNSD-DVVAAFDFFQR--------LPIKDTASW----- 73
            LF ++P+ +  S+  +L+ +  + D +  AA     R        L +K  A+      
Sbjct: 111 RLFPRLPRRNPHSFTFLLASLSNHLDTEPAAAGSIASRFMGTHVHALAVKAGAAGDLYVR 170

Query: 74  NTMISGFVQKKNMAKARDLFLAMP-EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSV 132
           N  I  +    ++A  R +F  +P  ++ V+W+A+++GY+  G +  A E+F   PV+  
Sbjct: 171 NAQIHFYGVCGDVAAMRKVFDELPIVRDVVTWNAVLAGYVRAGMVGVAREVFDGMPVRDE 230

Query: 133 VAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGK 192
           V+W+ +I GY+K G  E +     L + + M+  G++ N +++ + L   + L  L+ GK
Sbjct: 231 VSWSTVIGGYVKEGEPEVA-----LGVFKNMVAQGVKANEAAIVTALSAAAQLGLLEQGK 285

Query: 193 QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHG 252
            VH++V +  +         LI MY KCG +  A ++F  + R+DV  WN+MI G A HG
Sbjct: 286 FVHEVVKRVGMTMSVNLGAALIDMYSKCGSVAAAKEVFDAMPRRDVFAWNSMICGLATHG 345

Query: 253 KGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY 312
            G  A++LF+K   EG  P SITFV +L AC+  GLVD G +YF  M   Y I ++ +HY
Sbjct: 346 LGHDAVQLFEKFVSEGFCPTSITFVGVLNACSRTGLVDEGRRYFKLMAEKYDIESEMEHY 405

Query: 313 TCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNP 372
            CMVDLL RAG + EAV+LI+ M   P P ++GT+LSAC+ H  +DL       L  L+P
Sbjct: 406 GCMVDLLSRAGLVQEAVELIEGMRIPPDPVLWGTILSACKRHGLVDLGITVGNKLIELDP 465

Query: 373 ANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVH 432
           A+  G YV LA+IYA  KKWD+V ++R  M      K  G+S +E   +VH+F  GD  H
Sbjct: 466 AH-DGYYVLLASIYAKAKKWDEVRKVRKLMSNRGTSKSAGWSLMEAHGIVHKFLVGDMNH 524

Query: 433 PELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPL 492
            +   I+  L  + +R+  AGYVPD+   LH +G+E K   +  HSE+LAIA+G I V  
Sbjct: 525 KDSARIYNMLCTINRRLAEAGYVPDVSSVLHDIGDEEKVHAIKVHSERLAIAYGFIVVEA 584

Query: 493 GTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           G+PIR+ KNL VCGDCH  +K ++ +  REI+VRD +RFHH KDG CSC DYW
Sbjct: 585 GSPIRIVKNLSVCGDCHEFSKMVTKVFGREIVVRDGSRFHHMKDGKCSCHDYW 637


>gi|297814704|ref|XP_002875235.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321073|gb|EFH51494.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 579

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 206/521 (39%), Positives = 297/521 (57%), Gaps = 44/521 (8%)

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM--------------------- 96
           A   F ++P ++  SW TMIS + + K   KA +L + M                     
Sbjct: 67  AHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDGVRPNVYTYSSVLRACNG 126

Query: 97  ---------------PEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISG 141
                           E +    SA+I  + + G+ + A+ +F        + W ++I  
Sbjct: 127 MSDVRMLHCGIIKEGLESDVYVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIG- 185

Query: 142 YMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKS 201
               G+ +NS ++  L+L + M   G     ++L+SVL  C+ L+ L+LG Q H  + K 
Sbjct: 186 ----GFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVKY 241

Query: 202 PLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLF 261
              +D      L+ MYCKCG LEDA ++F +++ +DV+TW+ MISG AQ+G  ++AL+LF
Sbjct: 242 D--QDLILNNALVDMYCKCGSLEDARRVFNQMKERDVITWSTMISGLAQNGYSQEALKLF 299

Query: 262 DKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGR 321
           + MK  G KP+ IT V +L AC+HAGL++ G  YF SM   YGI    +HY CM+DLLG+
Sbjct: 300 ELMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGINPGREHYGCMIDLLGK 359

Query: 322 AGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQ 381
           AGKL +AV L+ +M  +P    + TLL ACRV + + LAE+AA  +  L+P + AG Y  
Sbjct: 360 AGKLDDAVKLLNEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPED-AGTYTV 418

Query: 382 LANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEK 441
           L+NIYA  +KWD V  IR  M++  + K PG SWIEV   +H F  GD  HP++V +++K
Sbjct: 419 LSNIYANSQKWDSVEEIRKRMRDIGIKKEPGCSWIEVNKQIHAFIIGDESHPQIVEVNKK 478

Query: 442 LKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKN 501
           L +L  R+   GYVP+  F L  +  E  E  L  HSEKLA+AFGL+ +P    IR+ KN
Sbjct: 479 LNQLIHRLIGIGYVPETNFVLQDLEGEQMEDSLRHHSEKLALAFGLMTLPSEKVIRIRKN 538

Query: 502 LRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCG 542
           LR+CGDCH   K  S +E R I++RD  R+HHF+DG CSCG
Sbjct: 539 LRICGDCHVFCKLASKLENRNIVIRDPIRYHHFQDGKCSCG 579



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 77/272 (28%), Positives = 140/272 (51%), Gaps = 17/272 (6%)

Query: 69  DTASWNTMISGFVQKKNMAKA----RDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELF 124
           D+A+++ +I   +  + + +     R L+    +      + +I+ Y++   L+ A +LF
Sbjct: 12  DSATYSELIKCCLSHRAVHEGNLICRHLYFNGHQPMMFLVNVLINMYVKFNLLNDAHQLF 71

Query: 125 KVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSH 184
              P ++V++WT MIS Y K         +  L+LL +M+  G+RPN  + SSVL  C+ 
Sbjct: 72  DQMPQRNVISWTTMISAYSKC-----KIHQKALELLVLMLRDGVRPNVYTYSSVLRACNG 126

Query: 185 LSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAM 244
           +S +++   +H  + K  L  D    + LI ++ K G+ EDA  +F E+   D + WN++
Sbjct: 127 MSDVRM---LHCGIIKEGLESDVYVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSI 183

Query: 245 ISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN-DY 303
           I G+AQ+ + + AL LF +MK  G   +  T  ++L AC    L++LG+Q    +V  D 
Sbjct: 184 IGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVKYDQ 243

Query: 304 GIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335
            +         +VD+  + G L +A  +  +M
Sbjct: 244 DLILN----NALVDMYCKCGSLEDARRVFNQM 271



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 64/259 (24%), Positives = 119/259 (45%), Gaps = 26/259 (10%)

Query: 3   VKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFF 62
           +++ V   S L     + G+ +DA  +FD++   D + +N ++     NS   V A + F
Sbjct: 142 LESDVYVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDV-ALELF 200

Query: 63  QRLP----IKDTASWNTMISGFVQKK--NMAKARDLFLAMPEKNSVSWSAMISGYIECGQ 116
           +R+     I + A+  +++          +     + +   +++ +  +A++  Y +CG 
Sbjct: 201 KRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVKYDQDLILNNALVDMYCKCGS 260

Query: 117 LDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLS 176
           L+ A  +F     + V+ W+ MISG  + GY     +++ LKL  +M   G +PN  ++ 
Sbjct: 261 LEDARRVFNQMKERDVITWSTMISGLAQNGY-----SQEALKLFELMKSSGTKPNYITIV 315

Query: 177 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTP-------LISMYCKCGDLEDACKL 229
            VL  CSH   L+ G       F+S   K    + P       +I +  K G L+DA KL
Sbjct: 316 GVLFACSHAGLLEDG----WYYFRS--MKKLYGINPGREHYGCMIDLLGKAGKLDDAVKL 369

Query: 230 FLEIQ-RKDVVTWNAMISG 247
             E++   D VTW  ++  
Sbjct: 370 LNEMECEPDAVTWRTLLGA 388


>gi|357134267|ref|XP_003568739.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Brachypodium distachyon]
          Length = 818

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 223/612 (36%), Positives = 331/612 (54%), Gaps = 72/612 (11%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELF----DKIPQPDVVSYNIMLS-CILLNSDDVVAA 58
           +T+V W  ++  +  Q G      ELF    D   +PD  S + M+S C  L S  +   
Sbjct: 209 RTSVVWTLLITRYV-QAGCASKVVELFLHMLDDGFEPDGYSMSSMISACTELGSVRLGQQ 267

Query: 59  FDFFQ-RLP-IKDTASWNTMISGFVQ---KKNMAKARDLFLAMPEKNSVSWSAMISGYIE 113
                 RL  + D+     ++  + +   +++M  AR +F  MP  N +SW+A+ISGY++
Sbjct: 268 LHSVALRLGLVSDSCVSCGLVDMYAKLKMERSMEHARKVFKTMPRHNVMSWTALISGYVQ 327

Query: 114 CG-QLDKAVELFK------VAP----------------------------VKSVVAWTAM 138
            G Q +  + LF+      + P                            +K+ +A   +
Sbjct: 328 SGVQENNVMALFREMLNESIRPNHITYSNLLKACANLSDQDSGRQIHAHVLKTSIAHVNV 387

Query: 139 ISGYMKFGYVENSWAEDGLKLLRMMIGLGI----------RPNAS--------------- 173
           +   +   Y E+   E+  K    +    I          R NAS               
Sbjct: 388 VGNALVSMYAESGCMEEARKAFDQLYETNILSMSPDVETERNNASCSSKIEGMDDGVSTF 447

Query: 174 SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI 233
           + +S+L   + +  L  G+++H L  K+    D      L+SMY +CG LEDAC+ F E+
Sbjct: 448 TFASLLSAAASVGLLTKGQKLHALSMKAGFRSDQGISNSLVSMYARCGYLEDACRAFDEM 507

Query: 234 QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGI 293
           +  +V++W ++ISG A+HG  ++AL +F  M   G+KP+ +T++A+L AC+H GLV  G 
Sbjct: 508 KDHNVISWTSIISGLAKHGYAKQALSMFHDMILAGVKPNDVTYIAVLSACSHVGLVKEGK 567

Query: 294 QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRV 353
           ++F SM  D+G+  + +HY C+VDLL R+G + EA   I +MP K    ++ TLLSACR 
Sbjct: 568 EHFRSMQKDHGLLPRMEHYACIVDLLARSGLVEEARQFINEMPCKADALVWKTLLSACRT 627

Query: 354 HKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGY 413
           +   ++ E AA ++ NL P + A  YV L+N+YA    WD+VARIR  M++ N+ K  G 
Sbjct: 628 YGNTEIGEIAANHVINLEPRDPAP-YVLLSNLYADAGLWDEVARIRSLMRDKNLSKETGL 686

Query: 414 SWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQL 473
           SW++VG  +HEFR+GD  HP  + I+ KL  L + +K  GYVPD    LH + EE+KEQ 
Sbjct: 687 SWMDVGNTIHEFRAGDTSHPLAIDIYAKLVTLIREIKDIGYVPDTSIVLHDMSEELKEQY 746

Query: 474 LLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHH 533
           LL HSEK+A+AFGLI      P+R+FKNLRVC DCH A KYIS    REII+RD+ RFH 
Sbjct: 747 LLQHSEKIAVAFGLITTSATKPMRIFKNLRVCADCHSAIKYISKSTGREIILRDSNRFHR 806

Query: 534 FKDGTCSCGDYW 545
            KDG CSCG+YW
Sbjct: 807 MKDGICSCGEYW 818



 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 88/342 (25%), Positives = 148/342 (43%), Gaps = 61/342 (17%)

Query: 42  NIMLSCILLN----SDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP 97
           ++ + C L++    + D+VAA   F  L  + +  W  +I+ +VQ    +K  +LFL M 
Sbjct: 179 DVSVGCALIDMFARNGDLVAAQRVFDGLIERTSVVWTLLITRYVQAGCASKVVELFLHML 238

Query: 98  ----EKNSVSWSAMISGYIE--------------------------CGQLD--------- 118
               E +  S S+MIS   E                          CG +D         
Sbjct: 239 DDGFEPDGYSMSSMISACTELGSVRLGQQLHSVALRLGLVSDSCVSCGLVDMYAKLKMER 298

Query: 119 ---KAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSL 175
               A ++FK  P  +V++WTA+ISGY++ G  EN    + + L R M+   IRPN  + 
Sbjct: 299 SMEHARKVFKTMPRHNVMSWTALISGYVQSGVQEN----NVMALFREMLNESIRPNHITY 354

Query: 176 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR 235
           S++L  C++LS    G+Q+H  V K+ +         L+SMY + G +E+A K F ++  
Sbjct: 355 SNLLKACANLSDQDSGRQIHAHVLKTSIAHVNVVGNALVSMYAESGCMEEARKAFDQLYE 414

Query: 236 KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKP--DSITFVALLLACNHAGLVDLGI 293
            ++++ +  +     +             K EGM     + TF +LL A    GL+  G 
Sbjct: 415 TNILSMSPDVETERNNASCSS--------KIEGMDDGVSTFTFASLLSAAASVGLLTKG- 465

Query: 294 QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335
           Q   ++    G  +       +V +  R G L +A     +M
Sbjct: 466 QKLHALSMKAGFRSDQGISNSLVSMYARCGYLEDACRAFDEM 507



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 70/247 (28%), Positives = 124/247 (50%), Gaps = 11/247 (4%)

Query: 98  EKNSVSWSAMISGYIECGQLDKAVELF-KVAPVKSVVAWTAMISGYMKFGYVENSWAEDG 156
           + ++V  +++++ Y +CG ++ A  +F ++  V+ +V+WTAM S   +     N    + 
Sbjct: 73  DTDAVVANSLLTMYSKCGAVEAARRVFDQMCGVRDLVSWTAMASCLAR-----NGAERES 127

Query: 157 LKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQL-GKQVHQLVFKSPL-CKDTTALTPLI 214
           L+LL  M+ LG+RPNA +L +    C      +L G  V   V K+     D +    LI
Sbjct: 128 LRLLGEMLELGLRPNAFTLCAAARACFPQELFRLAGGVVLGFVLKTGFWGTDVSVGCALI 187

Query: 215 SMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSI 274
            M+ + GDL  A ++F  +  +  V W  +I+ Y Q G   K + LF  M D+G +PD  
Sbjct: 188 DMFARNGDLVAAQRVFDGLIERTSVVWTLLITRYVQAGCASKVVELFLHMLDDGFEPDGY 247

Query: 275 TFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKK 334
           +  +++ AC   G V LG Q   S+    G+ +       +VD+  +  K+  +++  +K
Sbjct: 248 SMSSMISACTELGSVRLG-QQLHSVALRLGLVSDSCVSCGLVDMYAKL-KMERSMEHARK 305

Query: 335 MPFKPQP 341
           + FK  P
Sbjct: 306 V-FKTMP 311


>gi|15232648|ref|NP_190263.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207666|sp|Q9STF3.1|PP265_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g46790, chloroplastic; AltName: Full=Protein
           CHLORORESPIRATORY REDUCTION 2; Flags: Precursor
 gi|5541680|emb|CAB51186.1| putative protein [Arabidopsis thaliana]
 gi|110741961|dbj|BAE98921.1| hypothetical protein [Arabidopsis thaliana]
 gi|332644684|gb|AEE78205.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 657

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 202/546 (36%), Positives = 327/546 (59%), Gaps = 19/546 (3%)

Query: 13  LAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILL--NSDDVVAAFDFFQRLPIK-D 69
           L G     G +  A+++FDK  +  +  +N +   + L  + ++V+  +    R+ ++ D
Sbjct: 118 LIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVESD 177

Query: 70  TASWNTMISGFVQKK----NMAKARDLFLAMPEKNSVS----WSAMISGYIECGQLDKAV 121
             ++  ++   V  +    ++ K +++   +  +   S     + ++  Y   G +D A 
Sbjct: 178 RFTYTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSSHVYIMTTLVDMYARFGCVDYAS 237

Query: 122 ELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI--GLGIRPNASSLSSVL 179
            +F   PV++VV+W+AMI+ Y K     N  A + L+  R M+       PN+ ++ SVL
Sbjct: 238 YVFGGMPVRNVVSWSAMIACYAK-----NGKAFEALRTFREMMRETKDSSPNSVTMVSVL 292

Query: 180 LGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVV 239
             C+ L++L+ GK +H  + +  L      ++ L++MY +CG LE   ++F  +  +DVV
Sbjct: 293 QACASLAALEQGKLIHGYILRRGLDSILPVISALVTMYGRCGKLEVGQRVFDRMHDRDVV 352

Query: 240 TWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSM 299
           +WN++IS Y  HG G+KA+++F++M   G  P  +TFV++L AC+H GLV+ G + F++M
Sbjct: 353 SWNSLISSYGVHGYGKKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFETM 412

Query: 300 VNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDL 359
             D+GI  + +HY CMVDLLGRA +L EA  +++ M  +P P ++G+LL +CR+H  ++L
Sbjct: 413 WRDHGIKPQIEHYACMVDLLGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVEL 472

Query: 360 AEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVG 419
           AE A+  LF L P N AG YV LA+IYA  + WD+V R++  ++   + K+PG  W+EV 
Sbjct: 473 AERASRRLFALEPKN-AGNYVLLADIYAEAQMWDEVKRVKKLLEHRGLQKLPGRCWMEVR 531

Query: 420 TVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSE 479
             ++ F S D  +P +  IH  L +L + MK  GY+P  +  L+ +  E KE+++L HSE
Sbjct: 532 RKMYSFVSVDEFNPLMEQIHAFLVKLAEDMKEKGYIPQTKGVLYELETEEKERIVLGHSE 591

Query: 480 KLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTC 539
           KLA+AFGLI    G PIR+ KNLR+C DCH  TK+IS   ++EI+VRD  RFH FK+G C
Sbjct: 592 KLALAFGLINTSKGEPIRITKNLRLCEDCHLFTKFISKFMEKEILVRDVNRFHRFKNGVC 651

Query: 540 SCGDYW 545
           SCGDYW
Sbjct: 652 SCGDYW 657



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 81/176 (46%), Gaps = 11/176 (6%)

Query: 170 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 229
           P+  +   ++L C H SSL    +VH+ +  +   +D    T LI MY   G ++ A K+
Sbjct: 75  PSQQTYELLILCCGHRSSLSDALRVHRHILDNGSDQDPFLATKLIGMYSDLGSVDYARKV 134

Query: 230 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC------ 283
           F + +++ +  WNA+       G GE+ L L+ KM   G++ D  T+  +L AC      
Sbjct: 135 FDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKACVASECT 194

Query: 284 -NHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 338
            NH     +  +   + +   G ++     T +VD+  R G +  A  +   MP +
Sbjct: 195 VNHL----MKGKEIHAHLTRRGYSSHVYIMTTLVDMYARFGCVDYASYVFGGMPVR 246



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/261 (21%), Positives = 112/261 (42%), Gaps = 30/261 (11%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M V+  V+W++++A +AK  GK  +A   F +           M+     +S + V    
Sbjct: 243 MPVRNVVSWSAMIACYAKN-GKAFEALRTFRE-----------MMRETKDSSPNSVTMVS 290

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
             Q            +I G++ ++ +    D  L +        SA+++ Y  CG+L+  
Sbjct: 291 VLQACASLAALEQGKLIHGYILRRGL----DSILPV-------ISALVTMYGRCGKLEVG 339

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLL 180
             +F     + VV+W ++IS Y   GY      +  +++   M+  G  P   +  SVL 
Sbjct: 340 QRVFDRMHDRDVVSWNSLISSYGVHGY-----GKKAIQIFEEMLANGASPTPVTFVSVLG 394

Query: 181 GCSHLSSLQLGKQVHQLVFKSPLCK-DTTALTPLISMYCKCGDLEDACKLFLEIQRK-DV 238
            CSH   ++ GK++ + +++    K        ++ +  +   L++A K+  +++ +   
Sbjct: 395 ACSHEGLVEEGKRLFETMWRDHGIKPQIEHYACMVDLLGRANRLDEAAKMVQDMRTEPGP 454

Query: 239 VTWNAMISGYAQHGKGEKALR 259
             W +++     HG  E A R
Sbjct: 455 KVWGSLLGSCRIHGNVELAER 475


>gi|356545004|ref|XP_003540936.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Glycine max]
          Length = 629

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 207/545 (37%), Positives = 316/545 (57%), Gaps = 16/545 (2%)

Query: 9   WNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYN-----IMLSCIL---LNSDDVVAAFD 60
           + S++ GF    G   DA  LF ++ +  V++ N     ++ +C+L   L S   V    
Sbjct: 93  YTSLIDGFV-SFGSYTDAINLFCQMVRKHVLADNYAVTAMLKACVLQRALGSGKEVHGLV 151

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
               L +  + +   ++  + +   +  AR +F  MPE++ V+ + MI    +CG +++A
Sbjct: 152 LKSGLGLDRSIALK-LVELYGKCGVLEDARKMFDGMPERDVVACTVMIGSCFDCGMVEEA 210

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLL 180
           +E+F     +  V WT +I G      V N     GL++ R M   G+ PN  +   VL 
Sbjct: 211 IEVFNEMGTRDTVCWTMVIDGL-----VRNGEFNRGLEVFREMQVKGVEPNEVTFVCVLS 265

Query: 181 GCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVT 240
            C+ L +L+LG+ +H  + K  +  +      LI+MY +CGD+++A  LF  ++ KDV T
Sbjct: 266 ACAQLGALELGRWIHAYMRKCGVEVNRFVAGALINMYSRCGDIDEAQALFDGVRVKDVST 325

Query: 241 WNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV 300
           +N+MI G A HGK  +A+ LF +M  E ++P+ ITFV +L AC+H GLVDLG + F+SM 
Sbjct: 326 YNSMIGGLALHGKSIEAVELFSEMLKERVRPNGITFVGVLNACSHGGLVDLGGEIFESME 385

Query: 301 NDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLA 360
             +GI  + +HY CMVD+LGR G+L EA D I +M  +    +  +LLSAC++HK + + 
Sbjct: 386 MIHGIEPEVEHYGCMVDILGRVGRLEEAFDFIGRMGVEADDKMLCSLLSACKIHKNIGMG 445

Query: 361 EFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGT 420
           E  A  L + +    +G ++ L+N YA++ +W   A +R  M++  ++K PG S IEV  
Sbjct: 446 EKVA-KLLSEHYRIDSGSFIMLSNFYASLGRWSYAAEVREKMEKGGIIKEPGCSSIEVNN 504

Query: 421 VVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEK 480
            +HEF SGD  HPE   I++KL+EL    K  GY+P  E ALH + +E KE  L  HSE+
Sbjct: 505 AIHEFFSGDLRHPERKRIYKKLEELNYLTKFEGYLPATEVALHDIDDEQKELALAVHSER 564

Query: 481 LAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCS 540
           LAI +GL+     T +RV KNLR+C DCH   K I+ I +R+I+VRD  RFHHF++G CS
Sbjct: 565 LAICYGLVSTEAYTTLRVGKNLRICDDCHAMIKLIAKITRRKIVVRDRNRFHHFENGECS 624

Query: 541 CGDYW 545
           C DYW
Sbjct: 625 CKDYW 629



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 90/357 (25%), Positives = 156/357 (43%), Gaps = 74/357 (20%)

Query: 111 YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRP 170
           Y +   +D A++LF+     +V  +T++I G++ FG    S+  D + L   M+   +  
Sbjct: 69  YCKVNYIDHAIKLFRCTQNPNVYLYTSLIDGFVSFG----SYT-DAINLFCQMVRKHVLA 123

Query: 171 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL- 229
           +  +++++L  C    +L  GK+VH LV KS L  D +    L+ +Y KCG LEDA K+ 
Sbjct: 124 DNYAVTAMLKACVLQRALGSGKEVHGLVLKSGLGLDRSIALKLVELYGKCGVLEDARKMF 183

Query: 230 ------------------------------FLEIQRKDVVTWNAMISGYAQHGKGEKALR 259
                                         F E+  +D V W  +I G  ++G+  + L 
Sbjct: 184 DGMPERDVVACTVMIGSCFDCGMVEEAIEVFNEMGTRDTVCWTMVIDGLVRNGEFNRGLE 243

Query: 260 LFDKMKDEGMKPDSITFVALLLACNHAGLVDLG-------------IQYF--DSMVNDYG 304
           +F +M+ +G++P+ +TFV +L AC   G ++LG             +  F   +++N Y 
Sbjct: 244 VFREMQVKGVEPNEVTFVCVLSACAQLGALELGRWIHAYMRKCGVEVNRFVAGALINMYS 303

Query: 305 IAAKPDH---------------YTCMVDLLGRAGKLVEAVDLIKKM---PFKPQPAIFGT 346
                D                Y  M+  L   GK +EAV+L  +M     +P    F  
Sbjct: 304 RCGDIDEAQALFDGVRVKDVSTYNSMIGGLALHGKSIEAVELFSEMLKERVRPNGITFVG 363

Query: 347 LLSACRVHKRLDLAE--FAAMNLFN-LNP-ANAAGCYVQ-LANIYAAMKKWDDVARI 398
           +L+AC     +DL    F +M + + + P     GC V  L  +    + +D + R+
Sbjct: 364 VLNACSHGGLVDLGGEIFESMEMIHGIEPEVEHYGCMVDILGRVGRLEEAFDFIGRM 420



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 36/145 (24%), Positives = 64/145 (44%), Gaps = 1/145 (0%)

Query: 192 KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQH 251
           + +H    K+   +D      L+ +YCK   ++ A KLF   Q  +V  + ++I G+   
Sbjct: 44  QSIHCHAIKTRTSQDPFVAFELLRVYCKVNYIDHAIKLFRCTQNPNVYLYTSLIDGFVSF 103

Query: 252 GKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDH 311
           G    A+ LF +M  + +  D+    A+L AC     +  G +    +V   G+      
Sbjct: 104 GSYTDAINLFCQMVRKHVLADNYAVTAMLKACVLQRALGSG-KEVHGLVLKSGLGLDRSI 162

Query: 312 YTCMVDLLGRAGKLVEAVDLIKKMP 336
              +V+L G+ G L +A  +   MP
Sbjct: 163 ALKLVELYGKCGVLEDARKMFDGMP 187


>gi|357126224|ref|XP_003564788.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Brachypodium distachyon]
          Length = 515

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 184/441 (41%), Positives = 278/441 (63%), Gaps = 6/441 (1%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI 164
           +A++  Y +  +   A  LF   P + VV WT++++G  + G  + +     L++ R M+
Sbjct: 81  NALVDAYAKLSRGGAARALFDEMPRRDVVTWTSLLTGLARSGSHDAA-----LRVYRDMV 135

Query: 165 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 224
             G+ P+   +++ L  C+  ++L+LG+ VH    +  L    +    L+SMY K G L 
Sbjct: 136 ASGVEPDEYVVAAALSSCAGSTTLELGQSVHATAVRLGLEPFLSVGNSLVSMYAKTGSLR 195

Query: 225 DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 284
           +A K+F   + +  VTW A+I GYAQ+G+GE++L+++ +M   G +PD +TF+ LL AC+
Sbjct: 196 EARKVFDATRLRCPVTWTALIVGYAQNGRGEESLQVYAEMVHSGCRPDYVTFIGLLFACS 255

Query: 285 HAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIF 344
           HAGLVD G  +F SM  D+GI   PDHY CMVD+LGRAG+L EA++L+ +   K    ++
Sbjct: 256 HAGLVDAGRAHFKSMQADHGITPGPDHYACMVDVLGRAGRLDEAMELLDQSTMKLDATVW 315

Query: 345 GTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKE 404
             LL ACR H+  +LAE AA  ++ L+P +A   Y+ L+N+Y+  ++W DVARIR  MK 
Sbjct: 316 KALLGACRTHRNAELAERAAEMVWRLDPTDAVP-YIMLSNLYSRERRWSDVARIRTLMKS 374

Query: 405 NNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHA 464
             + K PG SW+    V H F   DR HP    I+ K++E+ ++++  G+V D ++AL  
Sbjct: 375 RGIAKEPGCSWVVASGVTHLFYVEDRGHPRTDEIYRKVEEMMEKVRAEGFVADTDWALQD 434

Query: 465 VGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREII 524
              E +E+ L  HSE+LA+AFGL+ +P G P+RVFKNLRVCGDCH A K ++ +  REII
Sbjct: 435 EAPEGREKGLAHHSERLAVAFGLLALPAGAPVRVFKNLRVCGDCHVAIKMVAKVYGREII 494

Query: 525 VRDTTRFHHFKDGTCSCGDYW 545
           +RD+  FHH +DG CSCGDYW
Sbjct: 495 LRDSNCFHHMRDGVCSCGDYW 515


>gi|297743497|emb|CBI36364.3| unnamed protein product [Vitis vinifera]
          Length = 832

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 224/600 (37%), Positives = 337/600 (56%), Gaps = 58/600 (9%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIP------QPDVVSYNIMLS-CILLNSD 53
           M  +  V WNS+++  A Q G   DA  LF ++       QPD  ++  +L+ C    +D
Sbjct: 236 MGERNQVTWNSIISAEA-QFGHFNDALVLFLRMQESEDGIQPDQFTFTTLLTLCANQRND 294

Query: 54  DVVAAFD--FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGY 111
           +          +    K+      ++  + +   +  A+++F  M E+N+ SW++MI GY
Sbjct: 295 NQGRQIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGY 354

Query: 112 IECGQLDKAVELFKVAPVKSV----VAWTAMISGYMKFG-----------YVENSWAEDG 156
            + G+  +A+ LFK   +  +     + ++M+S  +               V N+  E+G
Sbjct: 355 QQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEG 414

Query: 157 L---KLLRMMIGLGIRP--------------NASSLSSVLLGCSHLSSLQLGKQVHQL-V 198
           +    L+ M    G                 N +  +S+L G ++   L+     H L +
Sbjct: 415 ILQVVLVDMYAKCGSMDYAWKVYDQTIKKDRNTALWNSILAGYAN-KGLKKESFNHFLEM 473

Query: 199 FKSPLCKDTTAL----------TPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGY 248
            +S +  D   +          T L+ MY KCG +  A  +F  +  K++V+WNAMISGY
Sbjct: 474 LESDIEYDVLTMVTIVNLLVLETALVDMYSKCGAITKARTVFDNMNGKNIVSWNAMISGY 533

Query: 249 AQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK 308
           ++HG  ++AL L+++M  +GM P+ +TF+A+L AC+H GLV+ G++ F SM  DY I AK
Sbjct: 534 SKHGCSKEALILYEEMPKKGMYPNEVTFLAILSACSHTGLVEEGLRIFTSMQEDYNIEAK 593

Query: 309 PDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLF 368
            +HYTCMVDLLGRAG+L +A + ++KMP +P+ + +G LL ACRVHK +D+   AA  LF
Sbjct: 594 AEHYTCMVDLLGRAGRLEDAKEFVEKMPIEPEVSTWGALLGACRVHKDMDMGRLAAQRLF 653

Query: 369 NLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSG 428
            L+P N  G YV ++NIYAA  +W +V  IR  MK   V K PG SWIE+ + +  F +G
Sbjct: 654 ELDPQN-PGPYVIMSNIYAAAGRWKEVEDIRQMMKMKGVKKDPGVSWIEINSEIQIFHAG 712

Query: 429 DRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGE---EVKEQLLLFHSEKLAIAF 485
            + HP+   I+  L+ L  + K  GY+PD  F L  V +   E +E+ LL HSE+LA++ 
Sbjct: 713 SKTHPKTEEIYNNLRHLTLQSKGLGYIPDTSFILQNVKDIKEEEEEEYLLQHSERLALSL 772

Query: 486 GLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           GLI +P  + IRVFKNLR+CGDCH ATK+IS I  R II RDT RFHHF++G CSCGDYW
Sbjct: 773 GLISLPKKSTIRVFKNLRICGDCHTATKFISKITGRRIIARDTNRFHHFENGKCSCGDYW 832



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 71/268 (26%), Positives = 143/268 (53%), Gaps = 16/268 (5%)

Query: 26  AQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRL------PIKDTASWNTMISG 79
           A++LF+++P+ ++ ++N M+       DD + A+  F R+      P   T +    + G
Sbjct: 128 ARKLFEEMPERNLTAWNTMI-LAYARVDDYMEAWGIFDRMLKIGVCPDNFTFASALRVCG 186

Query: 80  FVQKKNMAKA--RDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTA 137
            ++ ++  K     L     + ++   +A+I  Y +C   +  +++F     ++ V W +
Sbjct: 187 ALRSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNS 246

Query: 138 MISGYMKFGYVENSWAEDGLKL-LRMMIGL-GIRPNASSLSSVLLGCSHLSSLQLGKQVH 195
           +IS   +FG+       D L L LRM     GI+P+  + +++L  C++  +   G+Q+H
Sbjct: 247 IISAEAQFGHFN-----DALVLFLRMQESEDGIQPDQFTFTTLLTLCANQRNDNQGRQIH 301

Query: 196 QLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGE 255
             + ++ + K+    T L+ MY +CG L  A ++F  +  ++  +WN+MI GY Q+G+ +
Sbjct: 302 AHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNGETQ 361

Query: 256 KALRLFDKMKDEGMKPDSITFVALLLAC 283
           +ALRLF +M+  G+KPD  +  ++L +C
Sbjct: 362 EALRLFKQMQLNGIKPDCFSLSSMLSSC 389



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 73/253 (28%), Positives = 111/253 (43%), Gaps = 39/253 (15%)

Query: 85  NMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMK 144
           ++  AR LF  MPE+N  +W+ MI  Y                         A +  YM+
Sbjct: 124 DLCYARKLFEEMPERNLTAWNTMILAY-------------------------ARVDDYME 158

Query: 145 FGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLC 204
                 +W      +   M+ +G+ P+  + +S L  C  L S   GKQVH  +      
Sbjct: 159 ------AWG-----IFDRMLKIGVCPDNFTFASALRVCGALRSRDGGKQVHSKLIACGFK 207

Query: 205 KDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKM 264
            DT     LI MY KC D E   K+F E+  ++ VTWN++IS  AQ G    AL LF +M
Sbjct: 208 GDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQFGHFNDALVLFLRM 267

Query: 265 K--DEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRA 322
           +  ++G++PD  TF  LL  C +    + G Q    ++    I       T +V +    
Sbjct: 268 QESEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRA-NITKNIIVETELVHMYSEC 326

Query: 323 GKLVEAVDLIKKM 335
           G+L  A ++  +M
Sbjct: 327 GRLNYAKEIFNRM 339



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 77/326 (23%), Positives = 130/326 (39%), Gaps = 56/326 (17%)

Query: 171 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC--- 227
           N    SS++  C   +S Q GK +H  +  +    D   +T ++ +Y + G L+D C   
Sbjct: 70  NPLPYSSLIQDCIDSNSFQRGKSIHTQMISNGYNPDAYLMTKILMLYARSGCLDDLCYAR 129

Query: 228 KLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN--- 284
           KLF E+  +++  WN MI  YA+     +A  +FD+M   G+ PD+ TF + L  C    
Sbjct: 130 KLFEEMPERNLTAWNTMILAYARVDDYMEAWGIFDRMLKIGVCPDNFTFASALRVCGALR 189

Query: 285 --------HAGLVDLGIQYFDSMVNDYGI---AAKPDHYTCM--VDLLG----------- 320
                   H+ L+  G +  D+ V +  I   A   D  +C+   D +G           
Sbjct: 190 SRDGGKQVHSKLIACGFK-GDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSII 248

Query: 321 ----RAGKLVEAVDLIKKMP-----FKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLN 371
               + G   +A+ L  +M       +P    F TLL+ C   +  +       +L   N
Sbjct: 249 SAEAQFGHFNDALVLFLRMQESEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRAN 308

Query: 372 PANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRV 431
                    +L ++Y+   + +    I   M E N      YSW    +++  ++     
Sbjct: 309 ITKNIIVETELVHMYSECGRLNYAKEIFNRMAERN-----AYSW---NSMIEGYQQNGET 360

Query: 432 HPELVSIHEKLKELEKRMKLAGYVPD 457
              L         L K+M+L G  PD
Sbjct: 361 QEAL--------RLFKQMQLNGIKPD 378


>gi|449446363|ref|XP_004140941.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g34160-like [Cucumis sativus]
          Length = 576

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 207/536 (38%), Positives = 307/536 (57%), Gaps = 19/536 (3%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G L  A  +F  IP P    +N ++    L+SD   A F +            + +   F
Sbjct: 49  GDLSYALHIFRYIPYPSTNDWNAVIRGTALSSDPANAVFWYRAMAASNGLHRIDALTCSF 108

Query: 81  VQK---KNMAKARDLFLAMP------EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKS 131
             K   + +A++  + L           + +  + ++  Y + G LD A +LF   P   
Sbjct: 109 ALKACARALARSEAIQLHSQLLRFGFNADVLLQTTLLDAYAKIGDLDLAQKLFDEMPQPD 168

Query: 132 VVAWTAMISGYMKFGYVENSWAEDGLKLL-RMMIGLGIRPNASSLSSVLLGCSHLSSLQL 190
           + +W A+I+G+      + S   D +    RM +   +RPNA ++   LL CS L +L+ 
Sbjct: 169 IASWNALIAGF-----AQGSRPADAIMTFKRMKVDGNLRPNAVTVQGALLACSQLGALKE 223

Query: 191 GKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ-RKDVVTWNAMISGYA 249
           G+ VH+ + +  L  +      +I MY KCG ++ A  +F  ++  K ++TWN MI  +A
Sbjct: 224 GESVHKYIVEEKLNSNVQVCNVVIDMYAKCGSMDKAYWVFENMRCDKSLITWNTMIMAFA 283

Query: 250 QHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKP 309
            HG G KAL LF+K+   GM PD+++++A+L ACNHAGLV+ G++ F+SM    G+    
Sbjct: 284 MHGDGHKALDLFEKLGRSGMSPDAVSYLAVLCACNHAGLVEDGLKLFNSMTQR-GLEPNI 342

Query: 310 DHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFN 369
            HY  MVDLLGRAG+L EA D++  +PF P   ++ TLL ACR +  +++AE A+  L  
Sbjct: 343 KHYGSMVDLLGRAGRLKEAYDIVSSLPF-PNMVLWQTLLGACRTYGDVEMAELASRKLVE 401

Query: 370 LNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGD 429
           +    + G +V L+N+YAA ++WDDV R+R +M+  +V K PG+S+IE+   +++F +GD
Sbjct: 402 MGFI-SCGDFVLLSNVYAARQRWDDVGRVRDAMRRRDVKKTPGFSYIEIKGKMYKFVNGD 460

Query: 430 RVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIK 489
           + H     I+ KL E+  R+K  GY  D    LH +G+E KE  L +HSEKLA+AFGL  
Sbjct: 461 QSHSSCREIYAKLDEINLRIKAYGYSADTSNVLHDIGDEDKENALCYHSEKLAVAFGLTC 520

Query: 490 VPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
              GTPI+V KNLR+CGDCH   K IS I  REIIVRD TRFH FK+G CSC DYW
Sbjct: 521 TEEGTPIQVIKNLRICGDCHVVIKLISKIYIREIIVRDRTRFHRFKEGLCSCKDYW 576



 Score = 48.5 bits (114), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 58/260 (22%), Positives = 110/260 (42%), Gaps = 48/260 (18%)

Query: 8   NWNSVLAGFAKQRGKLKDAQELFDKIP-----QPDVVSYN-IMLSCILLNSDDVVAAFDF 61
           +WN+++AGFA Q  +  DA   F ++      +P+ V+    +L+C  L +         
Sbjct: 171 SWNALIAGFA-QGSRPADAIMTFKRMKVDGNLRPNAVTVQGALLACSQLGA--------- 220

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAV 121
                +K+  S +  I   V++K               N    + +I  Y +CG +DKA 
Sbjct: 221 -----LKEGESVHKYI---VEEK------------LNSNVQVCNVVIDMYAKCGSMDKAY 260

Query: 122 ELFKVAPV-KSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGL---GIRPNASSLSS 177
            +F+     KS++ W  MI  +   G        DG K L +   L   G+ P+A S  +
Sbjct: 261 WVFENMRCDKSLITWNTMIMAFAMHG--------DGHKALDLFEKLGRSGMSPDAVSYLA 312

Query: 178 VLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKD 237
           VL  C+H   ++ G ++   + +  L  +      ++ +  + G L++A  +   +   +
Sbjct: 313 VLCACNHAGLVEDGLKLFNSMTQRGLEPNIKHYGSMVDLLGRAGRLKEAYDIVSSLPFPN 372

Query: 238 VVTWNAMISGYAQHGKGEKA 257
           +V W  ++     +G  E A
Sbjct: 373 MVLWQTLLGACRTYGDVEMA 392


>gi|297819260|ref|XP_002877513.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323351|gb|EFH53772.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 657

 Score =  384 bits (985), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 201/546 (36%), Positives = 326/546 (59%), Gaps = 19/546 (3%)

Query: 13  LAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILL--NSDDVVAAFDFFQRLPIK-D 69
           L G     G +  A+++FDK  +  +  +N +   + L  + ++V+  +    R+ ++ D
Sbjct: 118 LIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVESD 177

Query: 70  TASWNTMISGFVQKK----NMAKARDLFLAMPEKNSVS----WSAMISGYIECGQLDKAV 121
             ++  ++   V  +    ++ K +++   +  +   S     + ++  Y   G +D A 
Sbjct: 178 RFTYTYVLKACVASECTADHLTKGKEIHAHLTRRGYNSHVYIMTTLVDMYARFGCVDYAS 237

Query: 122 ELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIG--LGIRPNASSLSSVL 179
            +F   PV++VV+W+AMI+ Y K     N  A + L+  R M+       PN+ ++ SVL
Sbjct: 238 YVFNGMPVRNVVSWSAMIACYAK-----NGKAFEALRTFREMMTETKDSSPNSVTMVSVL 292

Query: 180 LGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVV 239
             C+ L++L+ G+ +H  + +  L      ++ L++MY +CG L+   ++F  +  +DVV
Sbjct: 293 QACASLAALEQGRLIHGYILRRGLDSILPVISALVTMYGRCGKLDVGQRVFDRMHDRDVV 352

Query: 240 TWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSM 299
           +WN++IS Y  HG G KA+++F++M   G  P  +TFV++L AC+H GLV+ G + F+SM
Sbjct: 353 SWNSLISSYGVHGYGRKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFESM 412

Query: 300 VNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDL 359
             D+GI  + +HY CMVDLLGRA +L EA  +++ M  +P P ++G+LL +CR+H  ++L
Sbjct: 413 WRDHGIKPQVEHYACMVDLLGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVEL 472

Query: 360 AEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVG 419
           AE A+  LF L P N AG YV LA+IYA  + WD+V R++  ++   + K+PG  W+EV 
Sbjct: 473 AERASRRLFALEPKN-AGNYVLLADIYAEAQMWDEVKRVKKLLEHRGLQKLPGRCWMEVR 531

Query: 420 TVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSE 479
             ++ F S D  +P +  IH  L +L + MK  GY+P  +  L+ +  E KE+++L HSE
Sbjct: 532 RKMYSFVSMDEFNPLMEQIHAFLVKLAEDMKEKGYIPQTKGVLYELETEEKERIVLGHSE 591

Query: 480 KLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTC 539
           KLA+AFGLI    G PIR+ KNLR+C DCH  TK+IS   ++EI+VRD  RFH FK+G C
Sbjct: 592 KLALAFGLINTSKGEPIRITKNLRLCEDCHLFTKFISKFMEKEILVRDVNRFHRFKNGVC 651

Query: 540 SCGDYW 545
           SCGDYW
Sbjct: 652 SCGDYW 657



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 60/114 (52%)

Query: 170 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 229
           P+  +   ++L C H SSL  G +VH+ +  +   +D    T LI MY   G ++ A K+
Sbjct: 75  PSQQTYELLILCCGHRSSLSDGLRVHRHILDNGSDQDPFLATKLIGMYSDLGSVDYARKV 134

Query: 230 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC 283
           F + +++ +  WNA+       G GE+ L L+ KM   G++ D  T+  +L AC
Sbjct: 135 FDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKAC 188



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 56/261 (21%), Positives = 112/261 (42%), Gaps = 30/261 (11%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M V+  V+W++++A +AK  GK  +A   F +           M++    +S + V    
Sbjct: 243 MPVRNVVSWSAMIACYAKN-GKAFEALRTFRE-----------MMTETKDSSPNSVTMVS 290

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
             Q            +I G++ ++ +    D  L +        SA+++ Y  CG+LD  
Sbjct: 291 VLQACASLAALEQGRLIHGYILRRGL----DSILPV-------ISALVTMYGRCGKLDVG 339

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLL 180
             +F     + VV+W ++IS Y   GY         +++   M+  G  P   +  SVL 
Sbjct: 340 QRVFDRMHDRDVVSWNSLISSYGVHGY-----GRKAIQIFEEMLANGASPTPVTFVSVLG 394

Query: 181 GCSHLSSLQLGKQVHQLVFKSPLCK-DTTALTPLISMYCKCGDLEDACKLFLEIQRK-DV 238
            CSH   ++ GK++ + +++    K        ++ +  +   L++A K+  +++ +   
Sbjct: 395 ACSHEGLVEEGKRLFESMWRDHGIKPQVEHYACMVDLLGRANRLDEAAKMVQDMRTEPGP 454

Query: 239 VTWNAMISGYAQHGKGEKALR 259
             W +++     HG  E A R
Sbjct: 455 KVWGSLLGSCRIHGNVELAER 475


>gi|147770672|emb|CAN62482.1| hypothetical protein VITISV_010810 [Vitis vinifera]
          Length = 704

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 204/536 (38%), Positives = 318/536 (59%), Gaps = 22/536 (4%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G + DA+ LFD++P+ +++S+N ++   L+++ D   AF  F  +    + + + M   F
Sbjct: 180 GMMIDARRLFDEMPEKNILSWNTIIGG-LVDAGDYFEAFRLFLMMWQXFSDAGSRM---F 235

Query: 81  VQKKNMAKARDLFLAMPEKNSVSWS-----------AMISGYIECGQLDKAVELFKVAPV 129
           V     +    L  A  + +S S             A+I  Y +CG ++ A  +F   P 
Sbjct: 236 VTMIRASAGLGLIFAGRQLHSCSLKTGVGGDVFVACALIDMYSKCGSIEDAQCVFDQMPE 295

Query: 130 KSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQ 189
           K+ V W ++I+GY   GY     +E+ L +   M   G++ +  + S ++  C+ L+SL+
Sbjct: 296 KTTVGWNSIIAGYALHGY-----SEEALSMYYEMRDSGVKIDNFTFSIIIRICARLASLE 350

Query: 190 LGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYA 249
             KQ H  + +     D  A T L+ +Y K G +EDA  +F  +  K+V++WNA+I+GY 
Sbjct: 351 HAKQAHAGLVRHGFGLDIVANTALVDLYSKWGRIEDAKHVFDMMPHKNVISWNALIAGYG 410

Query: 250 QHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKP 309
            HG+G +A+ +F++M  EGM P+ +TF+A+L AC+++GL D G + F+SM  D+ I  + 
Sbjct: 411 NHGRGVEAVEMFERMLHEGMVPNHVTFLAVLSACSYSGLSDRGWEIFESMSRDHKIKPRA 470

Query: 310 DHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFN 369
            HY CM++LLGR G L EA  LIK  PFKP   ++  LL+ACRVHK  +L +FAA  L+ 
Sbjct: 471 MHYACMIELLGREGLLDEAFALIKDAPFKPTVNMWAALLTACRVHKNFELGKFAAEKLYG 530

Query: 370 LNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGD 429
           + P   +  YV L NIY    + ++ A +  ++K   +  +P  SWIE+    + F SGD
Sbjct: 531 MGPEKLSN-YVVLLNIYNXSGRLEEAAAVIQTLKRRGLRMLPACSWIEIKKQPYGFISGD 589

Query: 430 RVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIK 489
           + H +   I++KL EL   +   GYVP  +F L  V E+ +E++LL+HSEKLAIAFGLI 
Sbjct: 590 KCHAQSKEIYQKLDELMLEISKHGYVPQXKFLLPDVDEQ-EERVLLYHSEKLAIAFGLIN 648

Query: 490 VPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
               TP+++ ++ R+CGDCH A K I+ + +REI+VRD +RFHHFKDG+CSCGDYW
Sbjct: 649 TSDWTPLQIVQSHRICGDCHSAIKLIALVTRREIVVRDASRFHHFKDGSCSCGDYW 704



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 74/291 (25%), Positives = 140/291 (48%), Gaps = 17/291 (5%)

Query: 58  AFDFFQRLPIK-----DTASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMI 108
           A + F+ L +      D+ +++ ++S  +  K++   + +F  M     + +    + ++
Sbjct: 114 ALELFEILELNGAYDMDSETYDALVSACIGLKSIRGVKKVFNYMINSGLDPDEYLRNRVL 173

Query: 109 SGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFG-YVENSWAEDGLKLLRMMIGLG 167
             +++CG +  A  LF   P K++++W  +I G +  G Y E        +L  MM    
Sbjct: 174 LMHVKCGMMIDARRLFDEMPEKNILSWNTIIGGLVDAGDYFE------AFRLFLMMWQXF 227

Query: 168 IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC 227
               +    +++   + L  +  G+Q+H    K+ +  D      LI MY KCG +EDA 
Sbjct: 228 SDAGSRMFVTMIRASAGLGLIFAGRQLHSCSLKTGVGGDVFVACALIDMYSKCGSIEDAQ 287

Query: 228 KLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG 287
            +F ++  K  V WN++I+GYA HG  E+AL ++ +M+D G+K D+ TF  ++  C    
Sbjct: 288 CVFDQMPEKTTVGWNSIIAGYALHGYSEEALSMYYEMRDSGVKIDNFTFSIIIRICARLA 347

Query: 288 LVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 338
            ++   Q    +V  +G        T +VDL  + G++ +A  +   MP K
Sbjct: 348 SLEHAKQAHAGLVR-HGFGLDIVANTALVDLYSKWGRIEDAKHVFDMMPHK 397



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 70/300 (23%), Positives = 123/300 (41%), Gaps = 49/300 (16%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCI------LLNSDD 54
           M  KTTV WNS++AG+A   G  ++A  ++ ++    V   N   S I      L + + 
Sbjct: 293 MPEKTTVGWNSIIAGYALH-GYSEEALSMYYEMRDSGVKIDNFTFSIIIRICARLASLEH 351

Query: 55  VVAAFDFFQRLPIK-DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE 113
              A     R     D  +   ++  + +   +  A+ +F  MP KN +SW+A+I+GY  
Sbjct: 352 AKQAHAGLVRHGFGLDIVANTALVDLYSKWGRIEDAKHVFDMMPHKNVISWNALIAGYGN 411

Query: 114 CGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNAS 173
            G+  +AVE+F+                                     M+  G+ PN  
Sbjct: 412 HGRGVEAVEMFE------------------------------------RMLHEGMVPNHV 435

Query: 174 SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTA-LTPLISMYCKCGDLEDACKLFLE 232
           +  +VL  CS+      G ++ + + +    K        +I +  + G L++A  L  +
Sbjct: 436 TFLAVLSACSYSGLSDRGWEIFESMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIKD 495

Query: 233 IQRKDVVT-WNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSIT-FVALLLACNHAGLVD 290
              K  V  W A+++    H   E  L  F   K  GM P+ ++ +V LL   N +G ++
Sbjct: 496 APFKPTVNMWAALLTACRVHKNFE--LGKFAAEKLYGMGPEKLSNYVVLLNIYNXSGRLE 553


>gi|147781801|emb|CAN65443.1| hypothetical protein VITISV_011420 [Vitis vinifera]
          Length = 485

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 198/483 (40%), Positives = 287/483 (59%), Gaps = 13/483 (2%)

Query: 69  DTASWNTMISGFVQKKNMAKARDLF-----LAMPEKNSVSWSAMISGYIECGQLDKAVEL 123
           D  +  +++    Q  N+ + + L      L + E  SV+ +A++  Y +C  ++ A E+
Sbjct: 10  DEVTMVSLVPACAQLGNLERGKLLHSYSKELGLDENLSVN-NAILDMYCKCDDIESAQEV 68

Query: 124 FKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCS 183
           F     K V++WT+M+SG  K GY + S     L L R M    I P+  +L  VL  C+
Sbjct: 69  FNRIREKDVLSWTSMLSGLAKSGYFQES-----LALFRKMQLHKIEPDEITLVGVLSACA 123

Query: 184 HLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNA 243
              +L  GK +H L+ K  +  D    T L+ MY KCG ++ A ++F  ++ ++V TWNA
Sbjct: 124 QTGALDQGKYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNA 183

Query: 244 MISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDY 303
           MI G A HG GE A+ LFD+M+ + + PD +TF+ALL AC+HAGLVD G+  F +M N +
Sbjct: 184 MIGGLAMHGHGEDAISLFDQMEXDKLMPDDVTFIALLCACSHAGLVDEGLAMFQAMKNKF 243

Query: 304 GIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFA 363
            I  + +HY C+VDLL RA K+ +A+  I+ MP K    ++ TLL ACR     DLAE  
Sbjct: 244 QIEPRMEHYGCVVDLLCRARKVDDALAFIENMPIKANSVLWATLLGACRSGGHFDLAEKI 303

Query: 364 AMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVH 423
              +  L P ++ G YV L+N+YA + +WD   ++R  MK   + K PG SWIE+  ++H
Sbjct: 304 XRRVIELEP-DSCGRYVMLSNLYAGVSQWDHALKLRKQMKNKGIEKTPGCSWIELNGMIH 362

Query: 424 EFRSGDRVHPELVSIHEKLKELEKRMKL-AGYVPDLEFALHAVGEEVKEQLLLFHSEKLA 482
           +F +GDR H +   I+  ++E+ +R+ L  G+VP     L  + EE KE  L  HSEKLA
Sbjct: 363 QFVAGDRSHLQTEQIYAMIEEMTRRVNLDGGHVPGTANVLFDIEEEEKEHSLFLHSEKLA 422

Query: 483 IAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCG 542
           IA GLI  P G+PIR+ KNLRVC DCH   K  S +  REI+ RD +RFHHFK+G+CSC 
Sbjct: 423 IALGLISTPSGSPIRIVKNLRVCNDCHSFLKVTSKVYNREIVARDRSRFHHFKEGSCSCM 482

Query: 543 DYW 545
           D+W
Sbjct: 483 DFW 485



 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 90/318 (28%), Positives = 147/318 (46%), Gaps = 52/318 (16%)

Query: 168 IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC 227
           +RP+  ++ S++  C+ L +L+ GK +H    +  L ++ +    ++ MYCKC D+E A 
Sbjct: 7   LRPDEVTMVSLVPACAQLGNLERGKLLHSYSKELGLDENLSVNNAILDMYCKCDDIESAQ 66

Query: 228 KLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG 287
           ++F  I+ KDV++W +M+SG A+ G  +++L LF KM+   ++PD IT V +L AC   G
Sbjct: 67  EVFNRIREKDVLSWTSMLSGLAKSGYFQESLALFRKMQLHKIEPDEITLVGVLSACAQTG 126

Query: 288 LVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK--------- 338
            +D G +Y   +++ + I       T +VD+  + G +  A+ + ++M  +         
Sbjct: 127 ALDQG-KYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNAMI 185

Query: 339 -------------------------PQPAIFGTLLSACRVHKRLD--LAEFAAM-NLFNL 370
                                    P    F  LL AC     +D  LA F AM N F +
Sbjct: 186 GGLAMHGHGEDAISLFDQMEXDKLMPDDVTFIALLCACSHAGLVDEGLAMFQAMKNKFQI 245

Query: 371 NP-ANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGD 429
            P     GC V L       +K DD     L+  EN  +K     W    T++   RSG 
Sbjct: 246 EPRMEHYGCVVDL---LCRARKVDDA----LAFIENMPIKANSVLW---ATLLGACRSGG 295

Query: 430 RVHPELVS-IHEKLKELE 446
             H +L   I  ++ ELE
Sbjct: 296 --HFDLAEKIXRRVIELE 311



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 56/268 (20%), Positives = 110/268 (41%), Gaps = 60/268 (22%)

Query: 53  DDVVAAFDFFQRLPIKDTASWNTMISGFVQ----KKNMAKARDLFLAMPEKNSVSW---- 104
           DD+ +A + F R+  KD  SW +M+SG  +    ++++A  R + L   E + ++     
Sbjct: 60  DDIESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQESLALFRKMQLHKIEPDEITLVGVL 119

Query: 105 -------------------------------SAMISGYIECGQLDKAVELFKVAPVKSVV 133
                                          +A++  Y +CG +D A+++F+   V++V 
Sbjct: 120 SACAQTGALDQGKYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVF 179

Query: 134 AWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ 193
            W AMI G    G+      ED + L   M    + P+  +  ++L  CSH   +  G  
Sbjct: 180 TWNAMIGGLAMHGH-----GEDAISLFDQMEXDKLMPDDVTFIALLCACSHAGLVDEGLA 234

Query: 194 VHQLVFKSPLCKDTTALTPLISMY-------CKCGDLEDACKLFLEIQRK-DVVTWNAMI 245
           + Q +      K+   + P +  Y       C+   ++DA      +  K + V W  ++
Sbjct: 235 MFQAM------KNKFQIEPRMEHYGCVVDLLCRARKVDDALAFIENMPIKANSVLWATLL 288

Query: 246 SGYAQHGKGEKALRLFDKMKDEGMKPDS 273
                 G  + A ++  ++ +  ++PDS
Sbjct: 289 GACRSGGHFDLAEKIXRRVIE--LEPDS 314


>gi|224139038|ref|XP_002326752.1| predicted protein [Populus trichocarpa]
 gi|222834074|gb|EEE72551.1| predicted protein [Populus trichocarpa]
          Length = 559

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 206/543 (37%), Positives = 302/543 (55%), Gaps = 44/543 (8%)

Query: 42  NIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK-- 99
           N++ +C L +   +  A   F+++    T  +NTMI G+V   NM  A  L+  M E+  
Sbjct: 22  NLVATCALSDWGSMDYACSIFRQIDQPGTFEFNTMIRGYVNVMNMENALFLYYEMLERGV 81

Query: 100 -----------------NSVSWSAMISGYI--------------------ECGQLDKAVE 122
                             S+     I GYI                    +CG+++ +  
Sbjct: 82  ESDNFTYPALFKACASLRSIEEGMQIHGYIFKRGLEGDLFVQNSLINMYGKCGKIELSCS 141

Query: 123 LFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGC 182
           +F+    + V +W+A+I+ +   G     W+E       M      RP  S L SVL  C
Sbjct: 142 VFEHMDRRDVASWSAIIAAHASLGM----WSECLSVFGEMSREGSCRPEESILVSVLSAC 197

Query: 183 SHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWN 242
           +HL +L LG+  H  + ++    +    T LI MY KCG +E    LF  + +K+ ++++
Sbjct: 198 THLGALDLGRCTHVTLLRNIREMNVIVQTSLIDMYVKCGCIEKGLSLFQRMVKKNQLSYS 257

Query: 243 AMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVND 302
            MI+G A HG+G +AL++F  M +EG+KPD + ++ +L ACNHAGLVD G+Q F+ M  +
Sbjct: 258 VMITGLAMHGRGMEALQVFSDMLEEGLKPDDVVYLGVLSACNHAGLVDEGLQCFNRMKLE 317

Query: 303 YGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEF 362
           +GI     HY C+V L+GRAG L +A++ I+ MP KP   ++  LLSAC+ H  L++ E 
Sbjct: 318 HGIEPTIQHYGCIVHLMGRAGMLNKALEHIRSMPIKPNEVVWRGLLSACKFHHNLEIGEI 377

Query: 363 AAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVV 422
           AA +L  LN +N  G YV L+N+YA  K+W+DVA+IR  M      + PG+S ++V   +
Sbjct: 378 AAKSLGELNSSN-PGDYVVLSNMYARAKRWEDVAKIRTEMARKGFTQTPGFSLVQVERKI 436

Query: 423 HEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLA 482
           ++F S D  HP+   ++E + ++E ++K  GY PD    L  V EE K Q L  HS+KLA
Sbjct: 437 YKFVSQDMSHPQCKGMYEMIHQMEWQLKFEGYSPDTSQVLFDVDEEEKRQRLKAHSQKLA 496

Query: 483 IAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCG 542
           +AF LI    G PIR+ +NLR+C DCH  TK IS I +REI VRD  RFHHFKDGTCSC 
Sbjct: 497 MAFALIHTSQGAPIRIARNLRMCNDCHTYTKLISVIYQREITVRDRNRFHHFKDGTCSCR 556

Query: 543 DYW 545
           DYW
Sbjct: 557 DYW 559


>gi|108864632|gb|ABG22571.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 692

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 218/578 (37%), Positives = 325/578 (56%), Gaps = 47/578 (8%)

Query: 8   NWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLS----------------CIL-- 49
           N  ++++ +AK R  L DA  LFD+ P+ D+  Y+ +L+                C+L  
Sbjct: 122 NPAALVSAYAKSR-LLPDALHLFDETPRRDIYIYSSLLTAVSHSASPELALPILRCMLSA 180

Query: 50  --LNSDDVV--AAFDFFQRLPIK-----------------DTASWNTMISGFVQKKNMAK 88
             L+ D  V  +    F RL  +                 D    ++++  + +  +   
Sbjct: 181 DALHPDHFVISSVASVFARLRSRRLGRQLHAHFVVSPYNGDDVVKSSLVDMYCKCGSPDD 240

Query: 89  ARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYV 148
            R +F +M  KNSV W+A++SGY   G+ ++A++LF+  P +++ AWTA+ISG +  G  
Sbjct: 241 GRKVFDSMSAKNSVVWTALVSGYASNGRSEEALQLFRSMPGRNLFAWTALISGLVNTGE- 299

Query: 149 ENSWAEDGLKLLRMMIGLGIR-PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDT 207
               +   ++L   M   G+R  +A  LS V+ G + L++  LG+Q+H    +     + 
Sbjct: 300 ----SVGAVELFVEMRRDGVRIDDAFVLSIVIGGSADLAAFVLGRQLHGSTMRLGFLSNM 355

Query: 208 TALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE 267
                LI MY KC D+  A ++F  I  +DV++W  M+ G AQHG+ E+AL L+D+M   
Sbjct: 356 IVGNALIDMYSKCSDILSAREVFEGITFRDVISWTTMVVGEAQHGRAEEALALYDRMVLA 415

Query: 268 GMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVE 327
           G KP+ +TFV L+ AC+HAGLV  G Q F+SM N+YGI  +  HYTC +DLL R+G L+E
Sbjct: 416 GAKPNEVTFVGLIYACSHAGLVQKGRQLFESMKNEYGITPRLQHYTCYLDLLSRSGHLLE 475

Query: 328 AVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYA 387
           A +L+  MP++P  A +G LLSAC  +K  ++    +  L  L P +++  Y+ L+N+YA
Sbjct: 476 AEELMTTMPYEPDEATWGALLSACTKYKDAEMCIRISDKLLELRPKDSS-TYILLSNVYA 534

Query: 388 AMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEK 447
              KWD VA++R  M    + K PGYSWIE G     F +G+        I   L+E+  
Sbjct: 535 VNGKWDSVAKVRKCMIGLEIRKEPGYSWIEAGREFRLFHAGEVPLDVREEIMVFLEEMVL 594

Query: 448 RMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGD 507
            M+  GYVPD    +H + E  KE  L  HSE+LA+AFGLIK P G+ IRV KNLRVC D
Sbjct: 595 EMRKRGYVPDTSSVMHDLEESEKEHHLFLHSERLAVAFGLIKSPPGSVIRVVKNLRVCVD 654

Query: 508 CHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           CH   K IS I  R+I+VRD++RFHHF+ G CSC ++W
Sbjct: 655 CHTVMKLISEITHRKIVVRDSSRFHHFEGGKCSCSEFW 692



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 75/297 (25%), Positives = 142/297 (47%), Gaps = 33/297 (11%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M+ K +V W ++++G+A   G+ ++A +LF  +P  ++ ++  ++S  L+N+ + V A +
Sbjct: 248 MSAKNSVVWTALVSGYASN-GRSEEALQLFRSMPGRNLFAWTALISG-LVNTGESVGAVE 305

Query: 61  FFQRL-----PIKDTASWNTMISGFVQKKNMAKARDLFLAMPE----KNSVSWSAMISGY 111
            F  +      I D    + +I G          R L  +        N +  +A+I  Y
Sbjct: 306 LFVEMRRDGVRIDDAFVLSIVIGGSADLAAFVLGRQLHGSTMRLGFLSNMIVGNALIDMY 365

Query: 112 IECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPN 171
            +C  +  A E+F+    + V++WT M+ G  + G      AE+ L L   M+  G +PN
Sbjct: 366 SKCSDILSAREVFEGITFRDVISWTTMVVGEAQHGR-----AEEALALYDRMVLAGAKPN 420

Query: 172 ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYC-------KCGDLE 224
             +   ++  CSH   +Q G+Q    +F+S   K+   +TP +  Y        + G L 
Sbjct: 421 EVTFVGLIYACSHAGLVQKGRQ----LFES--MKNEYGITPRLQHYTCYLDLLSRSGHLL 474

Query: 225 DACKLFLEIQ-RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKP-DSITFVAL 279
           +A +L   +    D  TW A++S   ++   E  +R+ DK+ +  ++P DS T++ L
Sbjct: 475 EAEELMTTMPYEPDEATWGALLSACTKYKDAEMCIRISDKLLE--LRPKDSSTYILL 529


>gi|357484833|ref|XP_003612704.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355514039|gb|AES95662.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 572

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 214/535 (40%), Positives = 316/535 (59%), Gaps = 18/535 (3%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDD------VVAAFDFFQRLPIKDTASWN 74
           G +  A  +F +I +P    YN M   I  N +D      ++   D  +R    D  ++ 
Sbjct: 46  GSMDYACSIFTQIDEPSSFDYNTM---IRGNVNDMKLEEALLLYVDMIERGVEPDKFTYP 102

Query: 75  TMISGF----VQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVK 130
            ++       V  + +     +F    E + +  +++I+ Y +CG++  A ++F     K
Sbjct: 103 FVLKACSLLGVVDEGIQVHGHVFKMGLEGDVIVQNSLINMYGKCGEIKNACDVFNGMDEK 162

Query: 131 SVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQL 190
           SV +W+A+I  +     VE  W E  + L +M      R   S+L +VL  C+HL S  L
Sbjct: 163 SVASWSAIIGAH---ACVE-MWNECLMLLGKMSSEGRCRVEESTLVNVLSACTHLGSPDL 218

Query: 191 GKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQ 250
           GK +H ++ ++    +    T LI MY K G LE   ++F  +  K+  ++  MISG A 
Sbjct: 219 GKCIHGILLRNISELNVVVKTSLIDMYVKSGCLEKGLRVFKNMSEKNRYSYTVMISGLAI 278

Query: 251 HGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPD 310
           HG+G++AL++F +M +EG+ PD + +V +  AC+HAGLV+ G+Q F SM  ++ I     
Sbjct: 279 HGRGKEALKVFSEMIEEGLAPDDVVYVGVFSACSHAGLVEEGLQCFKSMQFEHKIEPTVQ 338

Query: 311 HYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNL 370
           HY CMVDLLGR G L EA +LIK M  KP   I+ +LLSAC+VH  L++ + AA NLF L
Sbjct: 339 HYGCMVDLLGRFGMLKEAYELIKSMSIKPNDVIWRSLLSACKVHHNLEIGKIAAENLFML 398

Query: 371 NPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDR 430
           N  N+ G Y+ LAN+YA  +KWDDVA+IR  + E N+V+ PG+S IE    V++F S D+
Sbjct: 399 NQNNS-GDYLVLANMYAKAQKWDDVAKIRTKLAERNLVQTPGFSLIEAKRKVYKFVSQDK 457

Query: 431 VHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKV 490
             P+   I+E + ++E ++K  GY+PD    L  V +E K++ L FHS+KLAIAFGLI  
Sbjct: 458 SIPQWNIIYEMIHQMEWQLKFEGYIPDTSQVLLDVDDEEKKERLKFHSQKLAIAFGLIHT 517

Query: 491 PLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
             G+P+R+ +NLR+C DCH  TKYIS I +REI VRD  RFHHFK+G+CSC DYW
Sbjct: 518 SEGSPLRITRNLRMCSDCHTYTKYISMIYEREITVRDRLRFHHFKNGSCSCKDYW 572



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 78/158 (49%), Gaps = 3/158 (1%)

Query: 184 HLSSLQLGKQVHQLVFKSPLCKDTTALTPLISM--YCKCGDLEDACKLFLEIQRKDVVTW 241
           H + ++  KQVH  V K  +  DT  ++ L++     K G ++ AC +F +I       +
Sbjct: 7   HNNHMEEFKQVHAHVLKCGIFFDTFCMSNLVATCALTKWGSMDYACSIFTQIDEPSSFDY 66

Query: 242 NAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN 301
           N MI G     K E+AL L+  M + G++PD  T+  +L AC+  G+VD GIQ     V 
Sbjct: 67  NTMIRGNVNDMKLEEALLLYVDMIERGVEPDKFTYPFVLKACSLLGVVDEGIQ-VHGHVF 125

Query: 302 DYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKP 339
             G+         ++++ G+ G++  A D+   M  K 
Sbjct: 126 KMGLEGDVIVQNSLINMYGKCGEIKNACDVFNGMDEKS 163


>gi|224135349|ref|XP_002322051.1| predicted protein [Populus trichocarpa]
 gi|222869047|gb|EEF06178.1| predicted protein [Populus trichocarpa]
          Length = 924

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 212/554 (38%), Positives = 308/554 (55%), Gaps = 36/554 (6%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
           N+ +  +AK  G L  A+++F  I    V S+N ++     N D   A    FQ      
Sbjct: 389 NAFILAYAKC-GALNSAEKVFHGIGDKTVSSWNALIGGHAQNGDPRKALHLLFQMTYSGQ 447

Query: 70  TASWNTM------------------ISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGY 111
              W T+                  I G+V +  +    D F+          ++++S Y
Sbjct: 448 QPDWFTISSLLLACAHLKSLQYGKEIHGYVLRNGLET--DFFVG---------TSLLSHY 496

Query: 112 IECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPN 171
           I CG+   A  LF     K++V+W AMISGY      +N    + L L R  +  GI+ +
Sbjct: 497 IHCGKASSARVLFDRMKDKNLVSWNAMISGY-----SQNGLPYESLALFRKSLSEGIQSH 551

Query: 172 ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFL 231
             ++ SV   CS LS+L+LGK+ H  V K+   +D      +I MY K G ++++ K+F 
Sbjct: 552 EIAIVSVFGACSQLSALRLGKEAHGYVLKALQTEDAFVGCSIIDMYAKSGCIKESRKVFD 611

Query: 232 EIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDL 291
            ++ K+V +WNA+I  +  HG G++A+ L+++MK  G  PD  T++ +L+AC HAGLV+ 
Sbjct: 612 GLKDKNVASWNAIIVAHGIHGHGKEAIELYERMKKVGQMPDRFTYIGILMACGHAGLVEE 671

Query: 292 GIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSAC 351
           G++YF  M N   I  K +HY C++D+L RAG+L +A+ L+ +MP +    I+ +LL +C
Sbjct: 672 GLKYFKEMQNFNLIEPKLEHYACLIDMLARAGRLDDALRLVNEMPEEADNRIWSSLLRSC 731

Query: 352 RVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMP 411
           R    L++ E  A  L  L P  A   YV L+N+YA + KWD V R+R  MKE  + K  
Sbjct: 732 RTFGALEIGEKVAKKLLELEPDKAEN-YVLLSNLYAGLGKWDGVRRVRQMMKEIGLQKDA 790

Query: 412 GYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKE 471
           G SWIEVG  V+ F  GD + P+   I    + LE+R+   GY P+    LH VGEE K 
Sbjct: 791 GCSWIEVGGRVYSFVVGDSLQPKSAEIRVIWRRLEERISEIGYKPNTSSVLHEVGEEEKI 850

Query: 472 QLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRF 531
            +L  HSEKLAI+FGL+K   GT +R++KNLR+C DCH A K IS   +REI+VRD  RF
Sbjct: 851 DILRGHSEKLAISFGLLKTTKGTTLRIYKNLRICADCHNAAKLISKAVEREIVVRDNKRF 910

Query: 532 HHFKDGTCSCGDYW 545
           HHF+DG CSC DYW
Sbjct: 911 HHFRDGLCSCCDYW 924



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 75/287 (26%), Positives = 138/287 (48%), Gaps = 34/287 (11%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELF-DKIPQPDVVSYNIMLSCILLNSDDVVAAF 59
           M  K  + WN++++G+ +  G   D  ++F D +   D    N     ++     ++   
Sbjct: 105 METKNLIQWNALVSGYTRN-GLYGDVVKVFMDLVSDTDFQPDNFTFPSVIKACGGILDV- 162

Query: 60  DFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDK 119
               RL          +I G V K  M    D+F+          +A++  Y +CG +D+
Sbjct: 163 ----RL--------GEVIHGMVIK--MGLVLDVFVG---------NALVGMYGKCGAVDE 199

Query: 120 AVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGL-GIRPNASSLSSV 178
           A+++F   P  ++V+W +MI  +      EN ++ D   LL  M+G  G+ P+  ++ ++
Sbjct: 200 AMKVFDFMPETNLVSWNSMICAF-----SENGFSRDSFDLLMEMLGEEGLLPDVVTVVTI 254

Query: 179 LLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDV 238
           L  C+    + +G  +H L  K  L ++      ++ MY KCG L +A   F++   K+V
Sbjct: 255 LPVCAGEGEVDIGMGIHGLAVKLGLSEEVMVNNAMVYMYSKCGYLNEAQMSFVKNNNKNV 314

Query: 239 VTWNAMISGYAQHGKGEKALRLFDKMKDEG--MKPDSITFVALLLAC 283
           V+WN MIS ++  G   +A  L  +M+ +G  MK + +T + +L AC
Sbjct: 315 VSWNTMISAFSLEGDVNEAFNLLQEMQIQGEEMKANEVTILNVLPAC 361



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 72/294 (24%), Positives = 139/294 (47%), Gaps = 18/294 (6%)

Query: 42  NIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPE--- 98
           N+  + IL+ S    AAF     + ++   +   ++     +K++   R L   + +   
Sbjct: 20  NLTTALILIQSHSQNAAF-----ISLQAKEAIGLLLQACGNQKDIETGRRLHKFVSDSTH 74

Query: 99  --KNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDG 156
              + V  + +I  Y  CG    +  +F     K+++ W A++SGY +     N    D 
Sbjct: 75  YRNDYVLNTRLIKMYAMCGSPLDSRLVFDNMETKNLIQWNALVSGYTR-----NGLYGDV 129

Query: 157 LKLLRMMIG-LGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLIS 215
           +K+   ++     +P+  +  SV+  C  +  ++LG+ +H +V K  L  D      L+ 
Sbjct: 130 VKVFMDLVSDTDFQPDNFTFPSVIKACGGILDVRLGEVIHGMVIKMGLVLDVFVGNALVG 189

Query: 216 MYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKM-KDEGMKPDSI 274
           MY KCG +++A K+F  +   ++V+WN+MI  ++++G    +  L  +M  +EG+ PD +
Sbjct: 190 MYGKCGAVDEAMKVFDFMPETNLVSWNSMICAFSENGFSRDSFDLLMEMLGEEGLLPDVV 249

Query: 275 TFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEA 328
           T V +L  C   G VD+G+     +    G++ +      MV +  + G L EA
Sbjct: 250 TVVTILPVCAGEGEVDIGMG-IHGLAVKLGLSEEVMVNNAMVYMYSKCGYLNEA 302



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 87/162 (53%), Gaps = 5/162 (3%)

Query: 178 VLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTAL-TPLISMYCKCGDLEDACKLFLEIQRK 236
           +L  C +   ++ G+++H+ V  S   ++   L T LI MY  CG   D+  +F  ++ K
Sbjct: 49  LLQACGNQKDIETGRRLHKFVSDSTHYRNDYVLNTRLIKMYAMCGSPLDSRLVFDNMETK 108

Query: 237 DVVTWNAMISGYAQHGKGEKALRLF-DKMKDEGMKPDSITFVALLLACNHAGLVDLGI-Q 294
           +++ WNA++SGY ++G     +++F D + D   +PD+ TF +++ AC   G++D+ + +
Sbjct: 109 NLIQWNALVSGYTRNGLYGDVVKVFMDLVSDTDFQPDNFTFPSVIKAC--GGILDVRLGE 166

Query: 295 YFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 336
               MV   G+         +V + G+ G + EA+ +   MP
Sbjct: 167 VIHGMVIKMGLVLDVFVGNALVGMYGKCGAVDEAMKVFDFMP 208


>gi|225432810|ref|XP_002283562.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g43790-like [Vitis vinifera]
          Length = 590

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 213/538 (39%), Positives = 303/538 (56%), Gaps = 24/538 (4%)

Query: 26  AQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWN--TMISGF--- 80
           A  +F+ IP P +  YN ++S +         AF  + R+    T   N  T  S F   
Sbjct: 59  ALSIFNHIPNPTIFLYNTLISSLANIKPHTHIAFSLYSRVLTHTTLKPNGFTFPSLFKAC 118

Query: 81  -----VQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAW 135
                ++         L    P  +    +A+++ Y +CG++     LF       + +W
Sbjct: 119 GSQPWLRHGRALHTHVLKFLEPTCDPFVQAALLNYYAKCGKVGACRYLFNQISKPDLASW 178

Query: 136 TAMISGYMKFGYVENSWA--ED---GLKLLRMMIGLG---IRPNASSLSSVLLGCSHLSS 187
            +++S Y     V NS A  ED    L++L + I +    I+ N  +L +++  C+ L +
Sbjct: 179 NSILSAY-----VHNSGAICEDVSLSLEVLTLFIEMQKSLIKANEVTLVALISACAELGA 233

Query: 188 LQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISG 247
           L  G   H  V K  L  +    T LI MY KCG L+ AC+LF ++  +D + +NAMI G
Sbjct: 234 LSQGAWAHVYVLKHNLKLNHFVGTALIDMYSKCGCLDLACQLFDQLPHRDTLCYNAMIGG 293

Query: 248 YAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAA 307
           +A HG G +AL LF KM  EG+ PD +T V  + +C+H GLV+ G   F+SM   YG+  
Sbjct: 294 FAIHGYGHQALDLFKKMTLEGLAPDDVTLVVTMCSCSHVGLVEEGCDVFESMKEVYGVEP 353

Query: 308 KPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNL 367
           K +HY C+VDLLGRAG+L EA + +  MP KP   I+ +LL A RVH  L++ E    +L
Sbjct: 354 KLEHYGCLVDLLGRAGRLREAEERVLNMPMKPNAVIWRSLLGAARVHGNLEIGEVVLKHL 413

Query: 368 FNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRS 427
             L P   +G YV L+N+YA++ +WDDV R+R  MK++ + K+PG S +EVG  +HEF  
Sbjct: 414 IQLEP-ETSGNYVLLSNMYASINRWDDVKRVRKLMKDHGINKVPGSSLVEVGGAMHEFLM 472

Query: 428 GDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGL 487
           GD+ HP    I+ KL+E+ +R+   G+ P     L  + EE KE  L +HSE+LAIAF L
Sbjct: 473 GDKTHPRSKEIYLKLEEMSRRLHEYGHKPRTLEVLFDIEEEEKEDALSYHSERLAIAFAL 532

Query: 488 IKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           I      PIR+ KNLRVCGDCH ++K IS I +REIIVRD  RFHHFK+G CSC DYW
Sbjct: 533 IASHHCAPIRIIKNLRVCGDCHTSSKLISKIYEREIIVRDRNRFHHFKEGACSCSDYW 590



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 71/284 (25%), Positives = 126/284 (44%), Gaps = 37/284 (13%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSD----------DVVAAF 59
            + L  +  + GK+   + LF++I +PD+ S+N +LS  + NS           +V+  F
Sbjct: 147 QAALLNYYAKCGKVGACRYLFNQISKPDLASWNSILSAYVHNSGAICEDVSLSLEVLTLF 206

Query: 60  DFFQRLPIK-DTASWNTMISGFVQKKNMAK---ARDLFLAMPEK-NSVSWSAMISGYIEC 114
              Q+  IK +  +   +IS   +   +++   A    L    K N    +A+I  Y +C
Sbjct: 207 IEMQKSLIKANEVTLVALISACAELGALSQGAWAHVYVLKHNLKLNHFVGTALIDMYSKC 266

Query: 115 GQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASS 174
           G LD A +LF   P +  + + AMI G+   GY         L L + M   G+ P+  +
Sbjct: 267 GCLDLACQLFDQLPHRDTLCYNAMIGGFAIHGY-----GHQALDLFKKMTLEGLAPDDVT 321

Query: 175 LSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTP-------LISMYCKCGDLEDAC 227
           L   +  CSH+  ++ G      VF+S   K+   + P       L+ +  + G L +A 
Sbjct: 322 LVVTMCSCSHVGLVEEGCD----VFES--MKEVYGVEPKLEHYGCLVDLLGRAGRLREAE 375

Query: 228 KLFLEIQRK-DVVTWNAMISGYAQHGK---GEKALRLFDKMKDE 267
           +  L +  K + V W +++     HG    GE  L+   +++ E
Sbjct: 376 ERVLNMPMKPNAVIWRSLLGAARVHGNLEIGEVVLKHLIQLEPE 419


>gi|15240085|ref|NP_196272.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170345|sp|Q9FG16.1|PP367_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g06540
 gi|10178110|dbj|BAB11403.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332003649|gb|AED91032.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 622

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 199/517 (38%), Positives = 303/517 (58%), Gaps = 12/517 (2%)

Query: 31  DKIPQPDVVSYNIMLSCILLNSDDVVAAFDF-FQRLPIKDTASWNTMISGFVQKKNMAKA 89
           D I  P ++  +  + C+L+          F FQ     D    N+++  +     +A A
Sbjct: 116 DNITFPFLIKASSEMECVLVGEQTHSQIVRFGFQ----NDVYVENSLVHMYANCGFIAAA 171

Query: 90  RDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVE 149
             +F  M  ++ VSW++M++GY +CG ++ A E+F   P +++  W+ MI+GY K     
Sbjct: 172 GRIFGQMGFRDVVSWTSMVAGYCKCGMVENAREMFDEMPHRNLFTWSIMINGYAK----- 226

Query: 150 NSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTA 209
           N+  E  + L   M   G+  N + + SV+  C+HL +L+ G++ ++ V KS +  +   
Sbjct: 227 NNCFEKAIDLFEFMKREGVVANETVMVSVISSCAHLGALEFGERAYEYVVKSHMTVNLIL 286

Query: 210 LTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGM 269
            T L+ M+ +CGD+E A  +F  +   D ++W+++I G A HG   KA+  F +M   G 
Sbjct: 287 GTALVDMFWRCGDIEKAIHVFEGLPETDSLSWSSIIKGLAVHGHAHKAMHYFSQMISLGF 346

Query: 270 KPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAV 329
            P  +TF A+L AC+H GLV+ G++ +++M  D+GI  + +HY C+VD+LGRAGKL EA 
Sbjct: 347 IPRDVTFTAVLSACSHGGLVEKGLEIYENMKKDHGIEPRLEHYGCIVDMLGRAGKLAEAE 406

Query: 330 DLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAM 389
           + I KM  KP   I G LL AC+++K  ++AE     L  + P + +G YV L+NIYA  
Sbjct: 407 NFILKMHVKPNAPILGALLGACKIYKNTEVAERVGNMLIKVKPEH-SGYYVLLSNIYACA 465

Query: 390 KKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSG-DRVHPELVSIHEKLKELEKR 448
            +WD +  +R  MKE  V K PG+S IE+   +++F  G D+ HPE+  I  K +E+  +
Sbjct: 466 GQWDKIESLRDMMKEKLVKKPPGWSLIEIDGKINKFTMGDDQKHPEMGKIRRKWEEILGK 525

Query: 449 MKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDC 508
           ++L GY  +   A   V EE KE  +  HSEKLAIA+G++K   GT IR+ KNLRVC DC
Sbjct: 526 IRLIGYKGNTGDAFFDVDEEEKESSIHMHSEKLAIAYGMMKTKPGTTIRIVKNLRVCEDC 585

Query: 509 HRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           H  TK IS +  RE+IVRD  RFHHF++G CSC DYW
Sbjct: 586 HTVTKLISEVYGRELIVRDRNRFHHFRNGVCSCRDYW 622



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/205 (22%), Positives = 106/205 (51%), Gaps = 17/205 (8%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNS--DDVVAA 58
           M  +  V+W S++AG+ K  G +++A+E+FD++P  ++ +++IM++    N+  +  +  
Sbjct: 178 MGFRDVVSWTSMVAGYCKC-GMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDL 236

Query: 59  FDFFQRLPIKDTASWNTMISGFVQKKNMA------KARDLFL-AMPEKNSVSWSAMISGY 111
           F+F +R  +   A+   M+S      ++       +A +  + +    N +  +A++  +
Sbjct: 237 FEFMKREGV--VANETVMVSVISSCAHLGALEFGERAYEYVVKSHMTVNLILGTALVDMF 294

Query: 112 IECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPN 171
             CG ++KA+ +F+  P    ++W+++I G    G+     A   +     MI LG  P 
Sbjct: 295 WRCGDIEKAIHVFEGLPETDSLSWSSIIKGLAVHGH-----AHKAMHYFSQMISLGFIPR 349

Query: 172 ASSLSSVLLGCSHLSSLQLGKQVHQ 196
             + ++VL  CSH   ++ G ++++
Sbjct: 350 DVTFTAVLSACSHGGLVEKGLEIYE 374



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 45/200 (22%), Positives = 91/200 (45%), Gaps = 32/200 (16%)

Query: 168 IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC 227
           I P+  +   ++   S +  + +G+Q H  + +     D      L+ MY  CG +  A 
Sbjct: 113 IWPDNITFPFLIKASSEMECVLVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGFIAAAG 172

Query: 228 KLFLEIQRKDVVTWNA-------------------------------MISGYAQHGKGEK 256
           ++F ++  +DVV+W +                               MI+GYA++   EK
Sbjct: 173 RIFGQMGFRDVVSWTSMVAGYCKCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEK 232

Query: 257 ALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMV 316
           A+ LF+ MK EG+  +    V+++ +C H G ++ G + ++ +V  + +       T +V
Sbjct: 233 AIDLFEFMKREGVVANETVMVSVISSCAHLGALEFGERAYEYVVKSH-MTVNLILGTALV 291

Query: 317 DLLGRAGKLVEAVDLIKKMP 336
           D+  R G + +A+ + + +P
Sbjct: 292 DMFWRCGDIEKAIHVFEGLP 311



 Score = 45.4 bits (106), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 50/238 (21%), Positives = 97/238 (40%), Gaps = 25/238 (10%)

Query: 177 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGD----------LEDA 226
           ++L  CS  S L++   +H  + ++ L  D    + L+++   C D          L  A
Sbjct: 17  ALLQSCSSFSDLKI---IHGFLLRTHLISDVFVASRLLAL---CVDDSTFNKPTNLLGYA 70

Query: 227 CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHA 286
             +F +IQ  ++  +N +I  ++   +  KA   + +M    + PD+ITF  L+ A +  
Sbjct: 71  YGIFSQIQNPNLFVFNLLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASSEM 130

Query: 287 GLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGT 346
             V +G Q    +V  +G          +V +    G +  A  +  +M F+   +    
Sbjct: 131 ECVLVGEQTHSQIVR-FGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRDVVSWTSM 189

Query: 347 LLSACRV----HKRLDLAEFAAMNLFN----LNPANAAGCYVQLANIYAAMKKWDDVA 396
           +   C+     + R    E    NLF     +N      C+ +  +++  MK+   VA
Sbjct: 190 VAGYCKCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGVVA 247


>gi|449434238|ref|XP_004134903.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 609

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 204/552 (36%), Positives = 311/552 (56%), Gaps = 47/552 (8%)

Query: 34  PQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLF 93
           PQ    + +++ + + L++    AA   F ++   +  +WNTMI GF + +N + A +LF
Sbjct: 65  PQNPDFNKHLIFALVSLSAPMSFAA-QIFNQIQAPNIFTWNTMIRGFAESENPSPAVELF 123

Query: 94  LAM-------PEKNSVSW---------------------------------SAMISGYIE 113
             M       P+ ++  +                                 ++++  Y  
Sbjct: 124 SQMHAASSILPDTHTFPFLFKAVAKLMDVSLGEGIHSVVVRNGFDSLRFVQNSLVHMYSV 183

Query: 114 CGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNAS 173
            G  + A ++F++   +  VAW ++I+G+       N    + L L R M   G+ P+  
Sbjct: 184 FGFAESAYQVFEIMSYRDRVAWNSVINGF-----ALNGMPNEALTLYREMGSEGVEPDGF 238

Query: 174 SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI 233
           ++ S+L  C  L +L LG++VH  + K  L ++  A   L+ +Y KCG+  DA K+F E+
Sbjct: 239 TMVSLLSACVELGALALGERVHMYMVKVGLVQNQHASNALLDLYSKCGNFRDAQKVFDEM 298

Query: 234 QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGI 293
           + + VV+W ++I G A +G G +AL+LF +++ +G+KP  ITFV +L AC+H G++D G 
Sbjct: 299 EERSVVSWTSLIVGLAVNGLGNEALKLFGELERQGLKPSEITFVGVLYACSHCGMLDEGF 358

Query: 294 QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRV 353
            YF  M  +YGI  + +H+ CMVDLL RAGK+ +A D I+ MP  P   I+ TLL AC +
Sbjct: 359 NYFRRMKEEYGILPRIEHHGCMVDLLCRAGKVGDAYDYIRNMPVPPNAVIWRTLLGACTI 418

Query: 354 HKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGY 413
           H  L+L E A   +  L   + +G +V L+N+YA+ ++W DV  +R  M    V K PGY
Sbjct: 419 HGHLELGEVARAEIQRLEQRH-SGDFVLLSNLYASERRWLDVQNVRKIMLMKGVKKTPGY 477

Query: 414 SWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQL 473
           S +E+   V+EF  GDR HP+    +  L ++ + +K+ GYVP     L  + EE KE  
Sbjct: 478 SLVELKNRVYEFIMGDRSHPQSEETYAMLAKITQLLKIEGYVPRTVNVLADIEEEEKETA 537

Query: 474 LLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHH 533
           L  H+EK+AIAF L+  P GTPIR+ KNLRVC DCH A K IS + +REIIVRD +RFHH
Sbjct: 538 LSHHTEKVAIAFMLVNTPPGTPIRIMKNLRVCADCHLAIKLISKVFEREIIVRDRSRFHH 597

Query: 534 FKDGTCSCGDYW 545
           FKDG+CSC DYW
Sbjct: 598 FKDGSCSCKDYW 609


>gi|356537880|ref|XP_003537434.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Glycine max]
          Length = 638

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 193/449 (42%), Positives = 274/449 (61%), Gaps = 7/449 (1%)

Query: 98  EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGL 157
           E N V  + M+ GY   G L  A ELF     +SVV+W  MISGY      +N + ++ +
Sbjct: 196 EFNVVLCNVMVDGYARVGNLKAARELFDRMAQRSVVSWNVMISGY-----AQNGFYKEAI 250

Query: 158 KLLRMMIGLG-IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISM 216
           ++   M+ +G + PN  +L SVL   S L  L+LGK VH    K+ +  D    + L+ M
Sbjct: 251 EIFHRMMQMGDVLPNRVTLVSVLPAISRLGVLELGKWVHLYAEKNKIRIDDVLGSALVDM 310

Query: 217 YCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITF 276
           Y KCG +E A ++F  + + +V+TWNA+I G A HGK         +M+  G+ P  +T+
Sbjct: 311 YAKCGSIEKAIQVFERLPQNNVITWNAVIGGLAMHGKANDIFNYLSRMEKCGISPSDVTY 370

Query: 277 VALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 336
           +A+L AC+HAGLVD G  +F+ MVN  G+  K +HY CMVDLLGRAG L EA +LI  MP
Sbjct: 371 IAILSACSHAGLVDEGRSFFNDMVNSVGLKPKIEHYGCMVDLLGRAGYLEEAEELILNMP 430

Query: 337 FKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVA 396
            KP   I+  LL A ++HK + +   AA  L  + P ++ G YV L+N+YA+   WD VA
Sbjct: 431 MKPDDVIWKALLGASKMHKNIKIGMRAAEVLMQMAPHDS-GAYVALSNMYASSGNWDGVA 489

Query: 397 RIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVP 456
            +RL MK+ ++ K PG SWIE+  V+HEF   D  H     IH  L+E+  ++ L G++P
Sbjct: 490 AVRLMMKDMDIRKDPGCSWIEIDGVIHEFLVEDDSHSRAKDIHSMLEEISNKLSLEGHMP 549

Query: 457 DLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYIS 516
           D    L  + E+ KE +L +HSEK+A+AFGLI  P  TP+ + KNLR+C DCH + K IS
Sbjct: 550 DTTQVLLKMDEKHKESVLHYHSEKIAVAFGLISTPPKTPLCIVKNLRICEDCHSSMKLIS 609

Query: 517 AIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
            + +R+I++RD  RFHHF+ G+CSC DYW
Sbjct: 610 KMYERKIVIRDRKRFHHFEHGSCSCMDYW 638



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 66/265 (24%), Positives = 118/265 (44%), Gaps = 52/265 (19%)

Query: 120 AVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVL 179
           A+ +F   P ++  AW  +I         ++   +  L   +M+    + PN  +  SVL
Sbjct: 68  ALSVFDQLPERNCFAWNTVIRA---LAETQDRHLDALLVFCQMLSEATVEPNQFTFPSVL 124

Query: 180 LGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA------------- 226
             C+ ++ L  GKQVH L+ K  L  D   +T L+ MY  CG +EDA             
Sbjct: 125 KACAVMARLAEGKQVHGLLLKFGLVDDEFVVTNLLRMYVMCGSMEDANVLFYRNVEGVDD 184

Query: 227 -----------------C-----------------KLFLEIQRKDVVTWNAMISGYAQHG 252
                            C                 +LF  + ++ VV+WN MISGYAQ+G
Sbjct: 185 VRNLVRDERGREFNVVLCNVMVDGYARVGNLKAARELFDRMAQRSVVSWNVMISGYAQNG 244

Query: 253 KGEKALRLFDKMKDEG-MKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDH 311
             ++A+ +F +M   G + P+ +T V++L A +  G+++LG ++         I      
Sbjct: 245 FYKEAIEIFHRMMQMGDVLPNRVTLVSVLPAISRLGVLELG-KWVHLYAEKNKIRIDDVL 303

Query: 312 YTCMVDLLGRAGKLVEAVDLIKKMP 336
            + +VD+  + G + +A+ + +++P
Sbjct: 304 GSALVDMYAKCGSIEKAIQVFERLP 328



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 83/325 (25%), Positives = 140/325 (43%), Gaps = 48/325 (14%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSC---------------------- 47
           N ++ G+A+  G LK A+ELFD++ Q  VVS+N+M+S                       
Sbjct: 203 NVMVDGYARV-GNLKAARELFDRMAQRSVVSWNVMISGYAQNGFYKEAIEIFHRMMQMGD 261

Query: 48  ILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAM 107
           +L N   +V+      RL + +   W  + +    +KN  +  D+            SA+
Sbjct: 262 VLPNRVTLVSVLPAISRLGVLELGKWVHLYA----EKNKIRIDDVL----------GSAL 307

Query: 108 ISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLG 167
           +  Y +CG ++KA+++F+  P  +V+ W A+I G    G      A D    L  M   G
Sbjct: 308 VDMYAKCGSIEKAIQVFERLPQNNVITWNAVIGGLAMHGK-----ANDIFNYLSRMEKCG 362

Query: 168 IRPNASSLSSVLLGCSHLSSLQLGKQ-VHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 226
           I P+  +  ++L  CSH   +  G+   + +V    L         ++ +  + G LE+A
Sbjct: 363 ISPSDVTYIAILSACSHAGLVDEGRSFFNDMVNSVGLKPKIEHYGCMVDLLGRAGYLEEA 422

Query: 227 CKLFLEIQRK-DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKP-DSITFVALLLACN 284
            +L L +  K D V W A++     H   +  +R  + +    M P DS  +VAL     
Sbjct: 423 EELILNMPMKPDDVIWKALLGASKMHKNIKIGMRAAEVLMQ--MAPHDSGAYVALSNMYA 480

Query: 285 HAGLVDLGIQYFDSMVNDYGIAAKP 309
            +G  D G+     M+ D  I   P
Sbjct: 481 SSGNWD-GVAAVRLMMKDMDIRKDP 504


>gi|147843467|emb|CAN82070.1| hypothetical protein VITISV_010010 [Vitis vinifera]
          Length = 1005

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 206/530 (38%), Positives = 286/530 (53%), Gaps = 46/530 (8%)

Query: 56   VAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP------------------ 97
             AA   F R+  +D  +WN++I+G+ Q  +   A D+F  +                   
Sbjct: 482  TAALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPAC 541

Query: 98   ---------------------EKNSVSWSAMISGYIECGQLDKAVELF-KVAPVKSVVAW 135
                                 E +    +A+I  Y +CG L  A  LF K    K  V W
Sbjct: 542  ALLNDLDQGTCIHGLIVKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTW 601

Query: 136  TAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVH 195
              +I+ YM+ G+     A++ +     M      PN+ +  SVL   ++L++ + G   H
Sbjct: 602  NVIIAAYMQNGH-----AKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFH 656

Query: 196  QLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGE 255
              + +     +T     LI MY KCG L  + KLF E+  KD V+WNAM+SGYA HG G+
Sbjct: 657  ACIIQMGFLSNTLVGNSLIDMYAKCGQLXYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGD 716

Query: 256  KALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCM 315
            +A+ LF  M++  ++ DS++FV++L AC H GLV+ G + F SM + Y I    +HY CM
Sbjct: 717  RAIALFSLMQESQVQIDSVSFVSVLSACRHXGLVEEGRKIFHSMSDKYHIKPDLEHYACM 776

Query: 316  VDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANA 375
            VDLLGRAG   E +  IK MP +P   ++G LL +CR+H  + L E A  +L  L P N 
Sbjct: 777  VDLLGRAGLFDETLGFIKVMPVEPDAGVWGALLGSCRMHSNVKLGEVALDHLVKLEPRNP 836

Query: 376  AGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPEL 435
            A  +V L++IYA   +W D  + R  M +  + K PG SW+E+   VH FR GD+ HP+L
Sbjct: 837  AH-FVVLSSIYAQSGRWADAGKARSKMNDLGLKKTPGCSWVELKNKVHAFRVGDKSHPQL 895

Query: 436  VSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTP 495
             S+H     L ++M+  GYVPD    L  V EE KE  L  HSE+LAI F L+  P G+ 
Sbjct: 896  ESMHLLWNTLLEKMEKIGYVPDRSCVLQNVEEEDKEMFLYSHSERLAITFALLNTPPGST 955

Query: 496  IRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
            I++ KNLRVC DCH  TK+IS I  R IIVRD TRFHHF+DG CSC DYW
Sbjct: 956  IQIVKNLRVCADCHTTTKFISKITTRRIIVRDATRFHHFEDGICSCNDYW 1005



 Score =  142 bits (357), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 91/287 (31%), Positives = 151/287 (52%), Gaps = 14/287 (4%)

Query: 13  LAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPI----K 68
           L     + G LK A+E+FDK+P+ DVV++N M++  L  S+D   A DFF+ + +     
Sbjct: 170 LVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAG-LSQSEDPCEAVDFFRSMQLVGVEP 228

Query: 69  DTASWNTMISGFVQKKNMAKARDL--FLAMPEKNSVSWSAMISGYIECGQLDKAVELFKV 126
            + S   +  G  +  N+   R +  ++   + +S   + +I  Y +CG +D A  +F  
Sbjct: 229 SSVSLLNLFPGICKLSNIELCRSIHGYVFRRDFSSAVSNGLIDLYSKCGDVDVARRVFDQ 288

Query: 127 APVKSVVAWTAMISGYMKFG-YVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHL 185
              +  V+W  M++GY   G +VE       L+L   M    +R N  S  S  L  +  
Sbjct: 289 MVDQDDVSWGTMMAGYAHNGCFVEV------LELFDKMKLGNVRINKVSAVSAFLAAAET 342

Query: 186 SSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMI 245
             L+ GK++H    +  +  D    TPL+ MY KCG+ E A +LF  +Q +D+V W+A+I
Sbjct: 343 IDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAII 402

Query: 246 SGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 292
           +   Q G  E+AL LF +M+++ MKP+ +T +++L AC    L+ LG
Sbjct: 403 AALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLG 449



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 107/386 (27%), Positives = 180/386 (46%), Gaps = 37/386 (9%)

Query: 7   VNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP 66
           V+W +++AG+A   G   +  ELFDK+           L  + +N    V+AF     L 
Sbjct: 295 VSWGTMMAGYA-HNGCFVEVLELFDKMK----------LGNVRINKVSAVSAF-----LA 338

Query: 67  IKDTASWNT--MISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELF 124
             +T        I G   ++ +    D+ +A P         ++  Y +CG+ +KA +LF
Sbjct: 339 AAETIDLEKGKEIHGCALQQRIDS--DILVATP---------LMVMYAKCGETEKAKQLF 387

Query: 125 KVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSH 184
                + +VAW+A+I+  ++ GY      E+ L L + M    ++PN  +L S+L  C+ 
Sbjct: 388 WGLQGRDLVAWSAIIAALVQTGY-----PEEALSLFQEMQNQKMKPNRVTLMSILPACAD 442

Query: 185 LSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAM 244
           LS L+LGK +H    K+ +  D +  T L+SMY KCG    A   F  +  +D+VTWN++
Sbjct: 443 LSLLKLGKSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSL 502

Query: 245 ISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYG 304
           I+GYAQ G    A+ +F K++   + PD+ T V ++ AC     +D G      ++   G
Sbjct: 503 INGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQGT-CIHGLIVKLG 561

Query: 305 IAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSAC--RVHKRLDLAEF 362
             +       ++D+  + G L  A  L  K  F      +  +++A     H +  ++ F
Sbjct: 562 FESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEAISSF 621

Query: 363 AAMNLFNLNPANAAGCYVQLANIYAA 388
             M L N +P +     V  A  Y A
Sbjct: 622 HQMRLENFHPNSVTFVSVLPAAAYLA 647



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 72/272 (26%), Positives = 126/272 (46%), Gaps = 54/272 (19%)

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM------PEKNSVSW----------- 104
           F   P      WN+MI  + + K   +A +++  M      P+K + ++           
Sbjct: 86  FDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKACTGALNL 145

Query: 105 ----------------------SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGY 142
                                 + ++  Y + G L +A E+F   P + VVAW AMI+G 
Sbjct: 146 QEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGL 205

Query: 143 MKFGYVENSWAED---GLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVF 199
                   S +ED    +   R M  +G+ P++ SL ++  G   LS+++L + +H  VF
Sbjct: 206 --------SQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIELCRSIHGYVF 257

Query: 200 KSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALR 259
           +       +    LI +Y KCGD++ A ++F ++  +D V+W  M++GYA +G   + L 
Sbjct: 258 RRDFSSAVS--NGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLE 315

Query: 260 LFDKMKDEGMKPDSITFVALLLACNHAGLVDL 291
           LFDKMK   ++ + ++ V+  LA   A  +DL
Sbjct: 316 LFDKMKLGNVRINKVSAVSAFLAA--AETIDL 345



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 93/182 (51%), Gaps = 5/182 (2%)

Query: 99  KNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLK 158
           K+  S + +I+ Y    + D A  +F   P  S + W +MI  Y +     +    + L+
Sbjct: 61  KHHHSITHLINLYSLFHKCDLARSVFDSTPNPSRILWNSMIRAYTR-----SKQYNEALE 115

Query: 159 LLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYC 218
           +   M+  G+ P+  + + VL  C+   +LQ G   H  + +  L +D      L+ MY 
Sbjct: 116 MYYCMVEKGLEPDKYTFTFVLKACTGALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYS 175

Query: 219 KCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVA 278
           K GDL+ A ++F ++ ++DVV WNAMI+G +Q     +A+  F  M+  G++P S++ + 
Sbjct: 176 KMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLN 235

Query: 279 LL 280
           L 
Sbjct: 236 LF 237



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 53/223 (23%), Positives = 100/223 (44%), Gaps = 11/223 (4%)

Query: 178 VLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKD 237
           +L  C HL+ L    Q+H  +  S   K   ++T LI++Y      + A  +F       
Sbjct: 38  LLSSCKHLNPLL---QIHAQIIVSGF-KHHHSITHLINLYSLFHKCDLARSVFDSTPNPS 93

Query: 238 VVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFD 297
            + WN+MI  Y +  +  +AL ++  M ++G++PD  TF  +L AC  A  +  G+ +F 
Sbjct: 94  RILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKACTGALNLQEGV-WFH 152

Query: 298 SMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRL 357
             ++  G+         +VD+  + G L  A ++  KMP +   A    +    +     
Sbjct: 153 GEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPC 212

Query: 358 DLAE-FAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIR 399
           +  + F +M L  + P++     V L N++  + K  ++   R
Sbjct: 213 EAVDFFRSMQLVGVEPSS-----VSLLNLFPGICKLSNIELCR 250


>gi|449468888|ref|XP_004152153.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
 gi|449515059|ref|XP_004164567.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
          Length = 721

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 206/539 (38%), Positives = 315/539 (58%), Gaps = 31/539 (5%)

Query: 7   VNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP 66
           + W+ +++ FA Q G+ + A E+F ++ +  V+      S +L  S D+       + L 
Sbjct: 214 IPWSFMISRFA-QSGQSEKALEIFCQMRRAFVIPNQFTFSSVLQASADI-------ESLD 265

Query: 67  IKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKV 126
           +  T   + + +G         + D+F++         +A+++ Y +CG +++++ELF+ 
Sbjct: 266 LSKTIHGHALKAGL--------STDVFVS---------NALMACYAKCGCIEQSMELFEA 308

Query: 127 APVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLS 186
              ++ V+W  +I  Y++ G       E  L L   M+   ++    + SS+L  C+ L+
Sbjct: 309 LSDRNDVSWNTIIVSYVQLGD-----GERALSLFSNMLRYQVQATEVTYSSILRACATLA 363

Query: 187 SLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMIS 246
           +L+LG QVH L  K+   +D      LI MY KCG ++DA  +F  +  +D V+WNA+I 
Sbjct: 364 ALELGLQVHCLTAKTIYGQDVAVGNALIDMYAKCGSIKDARFMFDMLDLRDKVSWNAIIC 423

Query: 247 GYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIA 306
           GY+ HG G +A+++F+ MK+   KPD +TFV +L AC++ G +D G QYF SM  DYGI 
Sbjct: 424 GYSMHGLGVEAIKMFNLMKETKCKPDELTFVGVLSACSNTGRLDEGKQYFTSMKQDYGIE 483

Query: 307 AKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMN 366
              +HYTCMV L+GR+G L +AV  I+ +PF+P   I+  LL AC +H  ++L   +A  
Sbjct: 484 PCMEHYTCMVWLMGRSGNLDQAVKFIEDIPFEPSVMIWRALLGACVIHNDVELGRISAQR 543

Query: 367 LFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFR 426
           +  L P + A  +V L+NIYA  ++W +VA +R  MK   V K PG SWIE    VH F 
Sbjct: 544 VLELEPRDEAS-HVLLSNIYARARRWGNVAYVRKHMKRKGVKKEPGLSWIENQGNVHCFT 602

Query: 427 SGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFG 486
             D  H +L  I+  L+ L  + + AGY P L   L  V ++ KE+LL  HSE+LA+AFG
Sbjct: 603 VADTSHADLKLINGMLEFLNMKTRKAGYSPQLNAVLLDVEDDEKERLLWLHSERLALAFG 662

Query: 487 LIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           L+++P G PIR+ KNLR+C DCH   K IS I  R+IIVRD  RFHHF++G+CSC DYW
Sbjct: 663 LVRMPAGCPIRIIKNLRICVDCHSVIKLISKIVGRDIIVRDMNRFHHFENGSCSCADYW 721



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 78/271 (28%), Positives = 133/271 (49%), Gaps = 14/271 (5%)

Query: 29  LFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK----DTASWNTMISGFVQKK 84
           +FD++P+ + VS+ + L      S+  + AF+ F RL  +    +   + T++   V  +
Sbjct: 2   VFDEMPERNTVSF-VTLIHGYAQSNKFIEAFELFARLHGEGHELNPFVFTTVLKLLVSME 60

Query: 85  NMAKARDLFLAMPE----KNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMIS 140
                R +   + +     N+   +A+I  Y   G +  A E+F     K +V+WT MI+
Sbjct: 61  WAELGRIVHGCVLKVGYGSNTFIGTALIDAYSVSGCVSMAREVFDEISSKDMVSWTGMIA 120

Query: 141 GYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK 200
            Y      EN    + L+    M   G +PN  + + VL  C  L +   GK VH  V K
Sbjct: 121 SY-----AENDCFSEALEFFSQMRVAGFKPNNFTFAGVLKACLGLQNFDAGKTVHCSVLK 175

Query: 201 SPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRL 260
           +   +D      L+ +Y +CGD +DA + F ++ + DV+ W+ MIS +AQ G+ EKAL +
Sbjct: 176 TNYERDLYVGVGLLELYTRCGDNDDAWRAFGDMPKNDVIPWSFMISRFAQSGQSEKALEI 235

Query: 261 FDKMKDEGMKPDSITFVALLLACNHAGLVDL 291
           F +M+   + P+  TF ++L A      +DL
Sbjct: 236 FCQMRRAFVIPNQFTFSSVLQASADIESLDL 266



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/176 (31%), Positives = 87/176 (49%), Gaps = 12/176 (6%)

Query: 123 LFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGC 182
           +F   P ++ V++  +I GY +     N + E   +L   + G G   N    ++VL   
Sbjct: 2   VFDEMPERNTVSFVTLIHGYAQ----SNKFIE-AFELFARLHGEGHELNPFVFTTVLKLL 56

Query: 183 SHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWN 242
             +   +LG+ VH  V K     +T   T LI  Y   G +  A ++F EI  KD+V+W 
Sbjct: 57  VSMEWAELGRIVHGCVLKVGYGSNTFIGTALIDAYSVSGCVSMAREVFDEISSKDMVSWT 116

Query: 243 AMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDS 298
            MI+ YA++    +AL  F +M+  G KP++ TF  +L AC       LG+Q FD+
Sbjct: 117 GMIASYAENDCFSEALEFFSQMRVAGFKPNNFTFAGVLKAC-------LGLQNFDA 165


>gi|297745783|emb|CBI15839.3| unnamed protein product [Vitis vinifera]
          Length = 505

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 189/450 (42%), Positives = 271/450 (60%), Gaps = 8/450 (1%)

Query: 98  EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSV--VAWTAMISGYMKFGYVENSWAED 155
           E + +  + ++  Y + G +++A  LF     ++   V W  MIS Y++ G    +    
Sbjct: 62  EYDMILQTGLLDFYAKHGYVEEARNLFDNMTERNSNSVTWNTMISAYVQCGEFGTA---- 117

Query: 156 GLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLIS 215
            + + + M    ++P   ++ S+L  C+HL +L +G+ +H  +    L  D      LI 
Sbjct: 118 -ISMFQQMQSENVKPTEVTMVSLLSACAHLGALDMGEWIHGYIRTKRLKIDVVLGNALID 176

Query: 216 MYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSIT 275
           MYCKCG LE A  +F  + RK++  WN++I G   +G+GE+A+  F  M+ EG+KPD +T
Sbjct: 177 MYCKCGALEAAIDVFHGLSRKNIFCWNSIIVGLGMNGRGEEAIAAFIVMEKEGIKPDGVT 236

Query: 276 FVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335
           FV +L  C+H+GL+  G +YF  M+  YG+    +HY CMVDLLGRAG L EA++LI+ M
Sbjct: 237 FVGILSGCSHSGLLSAGQRYFSEMLGVYGLEPGVEHYGCMVDLLGRAGYLKEALELIRAM 296

Query: 336 PFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDV 395
           P KP   + G+LL AC++HK   L E     L  L+P +  G YV L+N+YA++ +WDDV
Sbjct: 297 PMKPNSMVLGSLLRACQIHKDTKLGEQVTQQLLELDPCD-GGNYVFLSNLYASLSRWDDV 355

Query: 396 ARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYV 455
              R  M +  V K PG S IEV  +VHEF +GD  HP+   I+  L E+ K +K  G+V
Sbjct: 356 NTCRKLMIKRGVHKTPGCSSIEVNNIVHEFVAGDTSHPQFTQINAFLDEIAKELKGQGHV 415

Query: 456 PDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYI 515
           P+    LH + EE KE  + +HSE++A+AFGL+  P G  IRV KNLR C DCH A K I
Sbjct: 416 PNTANVLHDIEEEEKEGAIRYHSERIAVAFGLMSTPPGKTIRVVKNLRTCSDCHSAMKLI 475

Query: 516 SAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           S   KREIIVRD  RFHHF++G+CSC DYW
Sbjct: 476 SNAFKREIIVRDRKRFHHFRNGSCSCNDYW 505



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 78/300 (26%), Positives = 132/300 (44%), Gaps = 40/300 (13%)

Query: 148 VENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDT 207
           +E+    D L     M+   + P+ +S S +L  C+     QLG+  H  + K     D 
Sbjct: 6   LESGVCPDFLGFYSGMLRNDVLPSKTSFSLILRSCAISGEAQLGEAFHCQIMKMGFEYDM 65

Query: 208 TALTPLISMYCKCGDLEDACKLFLEIQRK--DVVTWNAMISGYAQHGKGEKALRLFDKMK 265
              T L+  Y K G +E+A  LF  +  +  + VTWN MIS Y Q G+   A+ +F +M+
Sbjct: 66  ILQTGLLDFYAKHGYVEEARNLFDNMTERNSNSVTWNTMISAYVQCGEFGTAISMFQQMQ 125

Query: 266 DEGMKPDSITFVALLLACNHAGLVDLG---------------IQYFDSMVNDY------- 303
            E +KP  +T V+LL AC H G +D+G               +   +++++ Y       
Sbjct: 126 SENVKPTEVTMVSLLSACAHLGALDMGEWIHGYIRTKRLKIDVVLGNALIDMYCKCGALE 185

Query: 304 -------GIAAKP----DHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACR 352
                  G++ K     +     + + GR  + + A  +++K   KP    F  +LS C 
Sbjct: 186 AAIDVFHGLSRKNIFCWNSIIVGLGMNGRGEEAIAAFIVMEKEGIKPDGVTFVGILSGCS 245

Query: 353 VHKRLDLAE--FAAM-NLFNLNPA-NAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVV 408
               L   +  F+ M  ++ L P     GC V L      +K+  ++ R  + MK N++V
Sbjct: 246 HSGLLSAGQRYFSEMLGVYGLEPGVEHYGCMVDLLGRAGYLKEALELIRA-MPMKPNSMV 304



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 61/265 (23%), Positives = 93/265 (35%), Gaps = 77/265 (29%)

Query: 69  DTASWNTMISGFVQKKNMAKARDLFLAMPEKN---------------------------- 100
           ++ +WNTMIS +VQ      A  +F  M  +N                            
Sbjct: 97  NSVTWNTMISAYVQCGEFGTAISMFQQMQSENVKPTEVTMVSLLSACAHLGALDMGEWIH 156

Query: 101 -----------SVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVE 149
                       V  +A+I  Y +CG L+ A+++F     K++  W ++I      G   
Sbjct: 157 GYIRTKRLKIDVVLGNALIDMYCKCGALEAAIDVFHGLSRKNIFCWNSII-----VGLGM 211

Query: 150 NSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTA 209
           N   E+ +    +M   GI+P+  +   +L GCSH   L  G    Q  F   L      
Sbjct: 212 NGRGEEAIAAFIVMEKEGIKPDGVTFVGILSGCSHSGLLSAG----QRYFSEML--GVYG 265

Query: 210 LTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGM 269
           L P +  Y                          M+    + G  ++AL L   M    M
Sbjct: 266 LEPGVEHY------------------------GCMVDLLGRAGYLKEALELIRAMP---M 298

Query: 270 KPDSITFVALLLACNHAGLVDLGIQ 294
           KP+S+   +LL AC       LG Q
Sbjct: 299 KPNSMVLGSLLRACQIHKDTKLGEQ 323



 Score = 43.5 bits (101), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 67/157 (42%), Gaps = 17/157 (10%)

Query: 57  AAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISGYI 112
           AA D F  L  K+   WN++I G        +A   F+ M ++    + V++  ++SG  
Sbjct: 186 AAIDVFHGLSRKNIFCWNSIIVGLGMNGRGEEAIAAFIVMEKEGIKPDGVTFVGILSGCS 245

Query: 113 ECGQLDKAVELFK-----VAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLG 167
             G L      F            V  +  M+    + GY+     ++ L+L+R M    
Sbjct: 246 HSGLLSAGQRYFSEMLGVYGLEPGVEHYGCMVDLLGRAGYL-----KEALELIRAM---P 297

Query: 168 IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLC 204
           ++PN+  L S+L  C      +LG+QV Q + +   C
Sbjct: 298 MKPNSMVLGSLLRACQIHKDTKLGEQVTQQLLELDPC 334


>gi|449480302|ref|XP_004155856.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 654

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 202/533 (37%), Positives = 313/533 (58%), Gaps = 14/533 (2%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNS--DDVVAAFDFFQRLPIK-DTASWNTMI 77
           G LK A+ LF+++   + V +  M+S  + N   ++ +  +   +      D  +  T++
Sbjct: 128 GDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLV 187

Query: 78  SGFVQKKNMAKARDLFLAMPEKN----SVSWSAMISGYIECGQLDKAVELFKVAPVKSVV 133
           S   + K++     L   + E +    +V  SA+++ Y +CG L  A ++F     K V 
Sbjct: 188 SACAELKDLGVGMKLHSHIREMDMKICAVLGSALVNMYAKCGDLKTARQVFDQLSDKDVY 247

Query: 134 AWTAMISGYMKFGYVENSWAEDGLKLLRMMIG-LGIRPNASSLSSVLLGCSHLSSLQLGK 192
           AW+A+I     FGYV+N+ + + L+L R + G   +RPN  ++ +V+  C+ L  L+ G+
Sbjct: 248 AWSALI-----FGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAVISACAQLGDLETGR 302

Query: 193 QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHG 252
            VH  + ++      +    LI M+ KCGD++ A ++F  +  KD+++WN+M++G A HG
Sbjct: 303 WVHDYITRTQKGHSVSLNNSLIDMFSKCGDIDAAKRIFDSMSYKDLISWNSMVNGLALHG 362

Query: 253 KGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY 312
            G +AL  F  M+   ++PD ITF+ +L AC+HAGLV  G + F  +   YG+  K +HY
Sbjct: 363 LGREALAQFHLMQTTDLQPDEITFIGVLTACSHAGLVQEGKKLFYEIEALYGVRLKSEHY 422

Query: 313 TCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNP 372
            CMVDLL RAG L EA + I+ MP +P  AI+G++L ACRV+  L+L E AA  L  L P
Sbjct: 423 GCMVDLLCRAGLLAEAREFIRVMPLQPDGAIWGSMLGACRVYNNLELGEEAARCLLELEP 482

Query: 373 ANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVH 432
            N  G Y+ L+NIYA  K W++V ++R  M E  + K PG S + +  + H F +GD  H
Sbjct: 483 TN-DGVYILLSNIYARRKMWNEVKKVRELMNEKGIQKTPGCSSVVIDNIAHSFLAGDCSH 541

Query: 433 PELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPL 492
           PE+  I   L+++ +++KL GYV D    L  + +  KE+ +  HSEKLA+ +GL+K  +
Sbjct: 542 PEIAEISIMLRQVREKLKLVGYVADTSEVLLNIDDNKKEESVSQHSEKLALCYGLLKSEI 601

Query: 493 GTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           G  I + KNLRVC DCH   K +S I +R+I +RD  RFHHFKDG+CSC DYW
Sbjct: 602 GGRIVILKNLRVCSDCHTLIKLVSKIYQRQITLRDRNRFHHFKDGSCSCRDYW 654



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 90/384 (23%), Positives = 175/384 (45%), Gaps = 56/384 (14%)

Query: 3   VKTTVNWNSVLAGFAKQ---RGKLKDAQELFDKIPQ-PDVVSY-NIMLSCILLNSDDV-- 55
           V   + WNS+L  F      R  L+   E+ ++    PD  ++ +++  C LL    V  
Sbjct: 40  VLDVLTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLKGCALLLEFKVGK 99

Query: 56  VAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECG 115
           V      + +   D     T+++ +    ++  AR LF  M  +N V W++MISGY++  
Sbjct: 100 VLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNH 159

Query: 116 QLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSL 175
             ++A+ L+K                            EDG             P+  ++
Sbjct: 160 CPNEALLLYK-------------------------KMEEDGFS-----------PDEVTM 183

Query: 176 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR 235
           ++++  C+ L  L +G ++H  + +  +       + L++MY KCGDL+ A ++F ++  
Sbjct: 184 ATLVSACAELKDLGVGMKLHSHIREMDMKICAVLGSALVNMYAKCGDLKTARQVFDQLSD 243

Query: 236 KDVVTWNAMISGYAQHGKGEKALRLFDKMK-DEGMKPDSITFVALLLACNHAGLVDLGIQ 294
           KDV  W+A+I GY ++ +  +AL+LF ++     M+P+ +T +A++ AC   G ++ G  
Sbjct: 244 KDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAVISACAQLGDLETG-- 301

Query: 295 YFDSMVNDYGIAAKPDHY----TCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSA 350
                V+DY    +  H       ++D+  + G +  A  +   M +K   + + ++++ 
Sbjct: 302 ---RWVHDYITRTQKGHSVSLNNSLIDMFSKCGDIDAAKRIFDSMSYKDLIS-WNSMVNG 357

Query: 351 CRVH--KRLDLAEFAAMNLFNLNP 372
             +H   R  LA+F  M   +L P
Sbjct: 358 LALHGLGREALAQFHLMQTTDLQP 381



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 57/175 (32%), Positives = 90/175 (51%), Gaps = 8/175 (4%)

Query: 120 AVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIR-PNASSLSSV 178
           A  +F    V  V+ W +M+  +     V ++     L+    M+      P+  +  S+
Sbjct: 31  AYSVFAHTRVLDVLTWNSMLRAF-----VNSNMPRRALQSYTEMLERSRNVPDRFTFPSL 85

Query: 179 LLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDV 238
           L GC+ L   ++GK +H  V K  L  D    T L++MY  CGDL+ A  LF  +  ++ 
Sbjct: 86  LKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNK 145

Query: 239 VTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGI 293
           V W +MISGY ++    +AL L+ KM+++G  PD +T   L+ AC  A L DLG+
Sbjct: 146 VVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSAC--AELKDLGV 198


>gi|224127907|ref|XP_002320193.1| predicted protein [Populus trichocarpa]
 gi|222860966|gb|EEE98508.1| predicted protein [Populus trichocarpa]
          Length = 498

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 202/506 (39%), Positives = 297/506 (58%), Gaps = 16/506 (3%)

Query: 48  ILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVS 103
           + + +D + ++   F  +  K+  +WN++ISG+  K +   A+ L   M E+    + ++
Sbjct: 1   MYVKNDCLTSSQAIFDNMKNKNIVAWNSLISGYSFKGHFDHAKRLLNRMKEEGIKPDLIT 60

Query: 104 WSAMISGYIECGQLDKAVELFKVAPVK----SVVAWTAMISGYMKFGYVENSWAEDGLKL 159
           W+++++GY   G   +A+ L     +     +VV+WTA+ISG  + G    S     ++ 
Sbjct: 61  WNSLVAGYSMRGHTKEALALIHDIKISGLTPNVVSWTALISGCSQNGNYSES-----IEA 115

Query: 160 LRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCK 219
              M   GI+PN++++SS+L  C  LS LQ GK++H L  +    +D    T LI  Y K
Sbjct: 116 FVQMQEEGIKPNSATISSLLRTCGGLSLLQKGKEIHCLSIRKSFIEDLYVATALIDTYSK 175

Query: 220 CGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVAL 279
            GDLE A K+F   + K + +WN MI G+A +G G + + L D M+  G+ PD+ITF AL
Sbjct: 176 SGDLESAHKVFWSAE-KTLASWNCMIMGFAINGCGREVIALLDGMQRAGILPDAITFTAL 234

Query: 280 LLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKP 339
           L  C ++GLV+ G + FD M NDYGI    +HY+CM DLLGRAG L EA D I+ MP KP
Sbjct: 235 LSGCKNSGLVEEGWKCFDMMSNDYGIKPTIEHYSCMADLLGRAGYLDEAWDFIQTMPIKP 294

Query: 340 QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIR 399
             +++G +L +CR+H  ++ AE AA  LF L P N+A  YV + ++YA   +W+DV RI+
Sbjct: 295 DASVWGAMLGSCRIHGNIEFAEIAAKELFKLEPYNSAN-YVLMLSLYAMSNRWEDVDRIK 353

Query: 400 LSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLE 459
             M    +     +SWI++   VH F +G   H +   I+ +L +L   +K  GY+PD+ 
Sbjct: 354 DLMDTRGIKPRQVWSWIQIDQRVHLFSAGGIPHQDEGEIYYELYQLVSELKKFGYLPDVN 413

Query: 460 FALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIE 519
                + EE K ++LL H+EKLAI +GLIK     PIRV KN R+C DCH A K IS + 
Sbjct: 414 CVYQNIDEEEKVKMLLSHTEKLAITYGLIKTS-SAPIRVIKNTRICSDCHTAAKLISLVR 472

Query: 520 KREIIVRDTTRFHHFKDGTCSCGDYW 545
            REI +RD  RFHHFK G CSC DYW
Sbjct: 473 SREIFLRDGVRFHHFKAGKCSCNDYW 498



 Score = 40.0 bits (92), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 82/182 (45%), Gaps = 24/182 (13%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQ----PDVVSYNIMLSCILLNSDDVVAAF 59
           KT  +WN ++ GFA   G  ++   L D + +    PD +++  +LS    NS  V   +
Sbjct: 191 KTLASWNCMIMGFAIN-GCGREVIALLDGMQRAGILPDAITFTALLSG-CKNSGLVEEGW 248

Query: 60  DFFQRLP----IKDTASWNTMISGFVQKKN-MAKARDLFLAMPEKNSVS-WSAM-----I 108
             F  +     IK T    + ++  + +   + +A D    MP K   S W AM     I
Sbjct: 249 KCFDMMSNDYGIKPTIEHYSCMADLLGRAGYLDEAWDFIQTMPIKPDASVWGAMLGSCRI 308

Query: 109 SGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGI 168
            G IE  ++  A ELFK+ P  S   +  M+S Y     + N W ED  ++  +M   GI
Sbjct: 309 HGNIEFAEI-AAKELFKLEPYNS-ANYVLMLSLYA----MSNRW-EDVDRIKDLMDTRGI 361

Query: 169 RP 170
           +P
Sbjct: 362 KP 363


>gi|359481819|ref|XP_002283419.2| PREDICTED: MATE efflux family protein 1 [Vitis vinifera]
          Length = 977

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 196/441 (44%), Positives = 273/441 (61%), Gaps = 18/441 (4%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI 164
           S+M+  Y +CG++  A ++F   P ++VV+W+ MI GY + G  E+   E+ L+L +  +
Sbjct: 49  SSMVDMYAKCGEIGDARKMFDEMPDRNVVSWSGMIYGYSQMG--ED---EEALRLFKQAL 103

Query: 165 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 224
              +  N  + SSV+  C + + L+LGKQ+H L  K+     +   + LIS+Y KCG +E
Sbjct: 104 IEDLDVNDFTFSSVVRVCGNSTLLELGKQIHGLCLKTSYDSSSFVGSSLISLYSKCGVIE 163

Query: 225 DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 284
           DA  +F EI  +++  WNAM+   AQH   EKA  LF +M+  GMKP+ ITF+ +L AC+
Sbjct: 164 DAYLVFHEIPIRNLGMWNAMLIACAQHAHTEKAFDLFKQMEGVGMKPNFITFLCVLYACS 223

Query: 285 HAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIF 344
           HAGLV+ G  YF+ M  +YGI     HY  MVDLLGRAGKL +AV +IKKMP +P  +++
Sbjct: 224 HAGLVEKGQFYFELM-KEYGIEPGAQHYASMVDLLGRAGKLKDAVSIIKKMPMEPTESVW 282

Query: 345 GTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKE 404
           G LL+ CR+H   +LA F A  +F L P ++A              ++++ AR R  +++
Sbjct: 283 GALLTGCRIHGDTELASFVADRVFELGPVSSAA------------GRYEEAARARKMLRD 330

Query: 405 NNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHA 464
             V K  G SW+E G  +H F +GDR HP    I++KL+EL + M+ AGY+ D  F L  
Sbjct: 331 QGVKKETGLSWVEEGNRIHTFAAGDRSHPYTKDIYKKLEELGEEMERAGYIADTSFVLQE 390

Query: 465 VGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREII 524
           V  E K Q + +HSE+LAIAFGLI  P   PIRV KNLRVCGDCH A K++S    R II
Sbjct: 391 VDGEEKNQTIRYHSERLAIAFGLISFPPERPIRVMKNLRVCGDCHTAIKFMSKCCGRTII 450

Query: 525 VRDTTRFHHFKDGTCSCGDYW 545
           VRD  RFH F+DG CSC DYW
Sbjct: 451 VRDNNRFHRFEDGNCSCRDYW 471



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 57/204 (27%), Positives = 104/204 (50%), Gaps = 14/204 (6%)

Query: 163 MIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGD 222
           M+  G+RP+     S    C  LS   +G+ VH    K+    D    + ++ MY KCG+
Sbjct: 1   MLDNGVRPDDHIFPSATKACGILSRCDIGQSVHSFAVKTGYDCDVFVGSSMVDMYAKCGE 60

Query: 223 LEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA 282
           + DA K+F E+  ++VV+W+ MI GY+Q G+ E+ALRLF +   E +  +  TF +++  
Sbjct: 61  IGDARKMFDEMPDRNVVSWSGMIYGYSQMGEDEEALRLFKQALIEDLDVNDFTFSSVVRV 120

Query: 283 CNHAGLVDLGIQYFDSMVNDYGIAAKPDH------YTCMVDLLGRAGKLVEAVDLIKKMP 336
           C ++ L++LG Q        +G+  K  +       + ++ L  + G + +A  +  ++P
Sbjct: 121 CGNSTLLELGKQI-------HGLCLKTSYDSSSFVGSSLISLYSKCGVIEDAYLVFHEIP 173

Query: 337 FKPQPAIFGTLLSACRVHKRLDLA 360
            +    ++  +L AC  H   + A
Sbjct: 174 IR-NLGMWNAMLIACAQHAHTEKA 196



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 58/257 (22%), Positives = 122/257 (47%), Gaps = 15/257 (5%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G++ DA+++FD++P  +VVS++ M+       +D   A   F++  I+D    +   S  
Sbjct: 59  GEIGDARKMFDEMPDRNVVSWSGMIYGYSQMGED-EEALRLFKQALIEDLDVNDFTFSSV 117

Query: 81  VQKKNMAKARDL--------FLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSV 132
           V+    +   +L             + +S   S++IS Y +CG ++ A  +F   P++++
Sbjct: 118 VRVCGNSTLLELGKQIHGLCLKTSYDSSSFVGSSLISLYSKCGVIEDAYLVFHEIPIRNL 177

Query: 133 VAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGK 192
             W AM+         +++  E    L + M G+G++PN  +   VL  CSH   ++ G+
Sbjct: 178 GMWNAML-----IACAQHAHTEKAFDLFKQMEGVGMKPNFITFLCVLYACSHAGLVEKGQ 232

Query: 193 QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVT-WNAMISGYAQH 251
              +L+ +  +         ++ +  + G L+DA  +  ++  +   + W A+++G   H
Sbjct: 233 FYFELMKEYGIEPGAQHYASMVDLLGRAGKLKDAVSIIKKMPMEPTESVWGALLTGCRIH 292

Query: 252 GKGEKALRLFDKMKDEG 268
           G  E A  + D++ + G
Sbjct: 293 GDTELASFVADRVFELG 309


>gi|225456313|ref|XP_002280013.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic [Vitis vinifera]
          Length = 704

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 204/536 (38%), Positives = 318/536 (59%), Gaps = 22/536 (4%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G + DA+ LFD++P+ +++S+N ++   L+++ D   AF  F  +    + + + M   F
Sbjct: 180 GMMIDARRLFDEMPEKNILSWNTIIGG-LVDAGDYFEAFRLFLMMWQDFSDAGSRM---F 235

Query: 81  VQKKNMAKARDLFLAMPEKNSVSWS-----------AMISGYIECGQLDKAVELFKVAPV 129
           V     +    L  A  + +S S             A+I  Y +CG ++ A  +F   P 
Sbjct: 236 VTMIRASAGLGLIFAGRQLHSCSLKTGVGGDVFVACALIDMYSKCGSIEDAQCVFDQMPE 295

Query: 130 KSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQ 189
           K+ V W ++I+GY   GY     +E+ L +   M   G++ +  + S ++  C+ L+SL+
Sbjct: 296 KTTVGWNSIIAGYALHGY-----SEEALSMYYEMRDSGVKIDNFTFSIIIRICARLASLE 350

Query: 190 LGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYA 249
             KQ H  + +     D  A T L+ +Y K G +EDA  +F  +  K+V++WNA+I+GY 
Sbjct: 351 HAKQAHAGLVRHGFGLDIVANTALVDLYSKWGRIEDAKHVFDMMPHKNVISWNALIAGYG 410

Query: 250 QHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKP 309
            HG+G +A+ +F++M  EGM P+ +TF+A+L AC+++GL D G + F+SM  D+ I  + 
Sbjct: 411 NHGRGVEAVEMFERMLHEGMVPNHVTFLAVLSACSYSGLSDRGWEIFESMSRDHKIKPRA 470

Query: 310 DHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFN 369
            HY CM++LLGR G L EA  LIK  PFKP   ++  LL+ACRVHK  +L +FAA  L+ 
Sbjct: 471 MHYACMIELLGREGLLDEAFALIKDAPFKPTVNMWAALLTACRVHKNFELGKFAAEKLYG 530

Query: 370 LNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGD 429
           + P   +  YV L NIY    + ++ A +  ++K   +  +P  SWIE+    + F SGD
Sbjct: 531 MGPEKLSN-YVVLLNIYNRSGRLEEAAAVIQTLKRRGLRMLPACSWIEIKKQPYGFISGD 589

Query: 430 RVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIK 489
           + H +   I++KL EL   +   GYVP  +F L  V E+ +E++LL+HSEKLAIAFGLI 
Sbjct: 590 KCHAQSKEIYQKLDELMLEISKHGYVPQDKFLLPDVDEQ-EERVLLYHSEKLAIAFGLIN 648

Query: 490 VPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
               TP+++ ++ R+CGDCH A K I+ + +REI+VRD +RFHHFKDG+CSCGDYW
Sbjct: 649 TSDWTPLQIVQSHRICGDCHSAIKLIALVTRREIVVRDASRFHHFKDGSCSCGDYW 704



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 74/291 (25%), Positives = 140/291 (48%), Gaps = 17/291 (5%)

Query: 58  AFDFFQRLPIK-----DTASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMI 108
           A + F+ L +      D+ +++ ++S  +  K++   + +F  M     + +    + ++
Sbjct: 114 ALELFEILELNGAYDMDSETYDALVSACIGLKSIRGVKKVFNYMINSGLDPDEYLRNRVL 173

Query: 109 SGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFG-YVENSWAEDGLKLLRMMIGLG 167
             +++CG +  A  LF   P K++++W  +I G +  G Y E        +L  MM    
Sbjct: 174 LMHVKCGMMIDARRLFDEMPEKNILSWNTIIGGLVDAGDYFE------AFRLFLMMWQDF 227

Query: 168 IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC 227
               +    +++   + L  +  G+Q+H    K+ +  D      LI MY KCG +EDA 
Sbjct: 228 SDAGSRMFVTMIRASAGLGLIFAGRQLHSCSLKTGVGGDVFVACALIDMYSKCGSIEDAQ 287

Query: 228 KLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG 287
            +F ++  K  V WN++I+GYA HG  E+AL ++ +M+D G+K D+ TF  ++  C    
Sbjct: 288 CVFDQMPEKTTVGWNSIIAGYALHGYSEEALSMYYEMRDSGVKIDNFTFSIIIRICARLA 347

Query: 288 LVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 338
            ++   Q    +V  +G        T +VDL  + G++ +A  +   MP K
Sbjct: 348 SLEHAKQAHAGLVR-HGFGLDIVANTALVDLYSKWGRIEDAKHVFDMMPHK 397



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 76/343 (22%), Positives = 134/343 (39%), Gaps = 81/343 (23%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCI------LLNSDD 54
           M  KTTV WNS++AG+A   G  ++A  ++ ++    V   N   S I      L + + 
Sbjct: 293 MPEKTTVGWNSIIAGYALH-GYSEEALSMYYEMRDSGVKIDNFTFSIIIRICARLASLEH 351

Query: 55  VVAAFDFFQRLPIK-DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE 113
              A     R     D  +   ++  + +   +  A+ +F  MP KN +SW+A+I+GY  
Sbjct: 352 AKQAHAGLVRHGFGLDIVANTALVDLYSKWGRIEDAKHVFDMMPHKNVISWNALIAGYGN 411

Query: 114 CGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNAS 173
            G+  +AVE+F+                                     M+  G+ PN  
Sbjct: 412 HGRGVEAVEMFE------------------------------------RMLHEGMVPNHV 435

Query: 174 SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI 233
           +  +VL  CS+      G ++ + + +    K         +M+  C             
Sbjct: 436 TFLAVLSACSYSGLSDRGWEIFESMSRDHKIKPR-------AMHYAC------------- 475

Query: 234 QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGI 293
                     MI    + G  ++A  L   +KD   KP    + ALL AC      +LG 
Sbjct: 476 ----------MIELLGREGLLDEAFAL---IKDAPFKPTVNMWAALLTACRVHKNFELGK 522

Query: 294 QYFDSMVNDYGIA-AKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335
              + +   YG+   K  +Y  ++++  R+G+L EA  +I+ +
Sbjct: 523 FAAEKL---YGMGPEKLSNYVVLLNIYNRSGRLEEAAAVIQTL 562


>gi|413934850|gb|AFW69401.1| hypothetical protein ZEAMMB73_719952 [Zea mays]
          Length = 742

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 211/551 (38%), Positives = 322/551 (58%), Gaps = 17/551 (3%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELF-----DKIPQPDVVSYNIMLSCILLNSDDVVAA 58
           +  V+W S++AG+++  G+  DA   F     D +   +V     + +C  L + D+   
Sbjct: 200 RNVVSWTSLIAGYSRA-GRPADAVYCFNCMLSDGVAPDEVAVIGALSACSKLKNLDLGRL 258

Query: 59  FDFF---QRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPE-KNSVSWSAMISGYIEC 114
                  +R+ + D      +I  + +  ++A+A+ +F A+   +    W+A+I GY + 
Sbjct: 259 LHLLVGQKRIRMTDNLV-VALIDMYAKCGDIAQAQAVFDAVGRGQKPEPWNAIIDGYCKL 317

Query: 115 GQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASS 174
           G +D A  LF     + V+ + +MI+GY+  G +      D L+L   M   G+R +  +
Sbjct: 318 GHVDVARSLFDQMGARDVITFNSMITGYIHSGRLR-----DALQLFMQMRRHGMRADNFT 372

Query: 175 LSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ 234
           + S+L  C+ L +L  G+ +H  + +  + +D    T L+ MY KCG +++A  +F  + 
Sbjct: 373 VVSLLTACASLGALPHGRALHASIEQRIVEEDVYLGTALLDMYMKCGRVDEATAVFHRMG 432

Query: 235 RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ 294
            +DV TW AMI+G A +G G+ AL  F +MK +G +P S+T++A+L AC+H+ L+D G  
Sbjct: 433 ERDVHTWTAMIAGLAFNGMGKDALESFCQMKRDGFQPTSVTYIAVLTACSHSSLLDEGRL 492

Query: 295 YFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVH 354
           +F+ M + + +  + +HY CM+DLL R+G L EA+ L++ MP +P   I+G++LSACRVH
Sbjct: 493 HFNEMRSLHKLHPQVEHYGCMIDLLARSGLLDEAMHLVQTMPMQPNAVIWGSILSACRVH 552

Query: 355 KRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYS 414
           K +DLA  AA +L  L P   A  YVQL NIY   ++W D  R+R+ M+E  V K  GYS
Sbjct: 553 KNIDLARHAAEHLLKLAPEEDA-VYVQLYNIYIDSRQWADAKRVRMLMEERGVKKTAGYS 611

Query: 415 WIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLL 474
            I V   VH+F + D+ HP  + I   ++E+  R+K  GY P        V EE KEQ L
Sbjct: 612 SITVAGQVHKFVANDQSHPWTLEIMAMMEEIACRLKSVGYSPVTSRIAVDVDEEEKEQAL 671

Query: 475 LFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHF 534
           L HSEK+AIAFGLI +P   PI + KNLRVC DCH A K +S +  REIIVRD +RFHHF
Sbjct: 672 LAHSEKIAIAFGLISLPPSLPIHIVKNLRVCEDCHSAIKLVSQLWNREIIVRDRSRFHHF 731

Query: 535 KDGTCSCGDYW 545
           +DG CSC D+W
Sbjct: 732 RDGACSCNDFW 742



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 87/296 (29%), Positives = 141/296 (47%), Gaps = 42/296 (14%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVV 133
           N +I  +        AR  F  +P K++V W+ +I G +  G LD+A  L   AP ++VV
Sbjct: 144 NPLIHMYASMGLTDDARRAFDEIPAKDAVVWATVIGGLVRWGLLDEARRLLVQAPERNVV 203

Query: 134 AWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ 193
           +WT++I+GY + G        D +     M+  G+ P+  ++   L  CS L +L LG+ 
Sbjct: 204 SWTSLIAGYSRAGR-----PADAVYCFNCMLSDGVAPDEVAVIGALSACSKLKNLDLGRL 258

Query: 194 VHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA-----------------------CK-- 228
           +H LV +  +      +  LI MY KCGD+  A                       CK  
Sbjct: 259 LHLLVGQKRIRMTDNLVVALIDMYAKCGDIAQAQAVFDAVGRGQKPEPWNAIIDGYCKLG 318

Query: 229 -------LFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLL 281
                  LF ++  +DV+T+N+MI+GY   G+   AL+LF +M+  GM+ D+ T V+LL 
Sbjct: 319 HVDVARSLFDQMGARDVITFNSMITGYIHSGRLRDALQLFMQMRRHGMRADNFTVVSLLT 378

Query: 282 ACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY--TCMVDLLGRAGKLVEAVDLIKKM 335
           AC   G +  G     S+        + D Y  T ++D+  + G++ EA  +  +M
Sbjct: 379 ACASLGALPHGRALHASIEQRI---VEEDVYLGTALLDMYMKCGRVDEATAVFHRM 431


>gi|414867547|tpg|DAA46104.1| TPA: hypothetical protein ZEAMMB73_772392 [Zea mays]
          Length = 677

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 210/533 (39%), Positives = 311/533 (58%), Gaps = 19/533 (3%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G +++A  +FD +P+ D V+++ M++   + +   V A   + R+     +    ++ G 
Sbjct: 156 GAMEEAIRVFDGMPRKDRVAWSTMVAG-FVTAGRPVEALAMYSRMREHGVSDDEVVMVGV 214

Query: 81  VQK-KNMAKAR-------DLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSV 132
           +Q   +   AR        L       + V+ ++++S Y + G LD A ++F++ P ++ 
Sbjct: 215 IQACMSTGNARIGASVHGRLLRHCMRMDVVTTTSLVSMYAKNGHLDVACQVFRMMPYRND 274

Query: 133 VAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGK 192
           V W+A+ISG+      +N  A + L L R +   G++P + +L S LL C+ +  L+LGK
Sbjct: 275 VTWSALISGF-----AQNGRAVEALDLFRELQADGLQPCSWALVSALLACASVGFLKLGK 329

Query: 193 QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHG 252
            +H  + +  L       T ++ MY KCG LE A KLF ++  +D+V WNA+I+    HG
Sbjct: 330 SIHGFILRR-LEWQCILGTAVLDMYSKCGSLESARKLFNKLSSRDLVLWNAIIACCGTHG 388

Query: 253 KGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY 312
            G  AL LF ++ + G+KPD  TF +LL A +H+GLV+ G  +FD M+ ++GI     HY
Sbjct: 389 CGHDALALFQELNETGIKPDHATFASLLSALSHSGLVEEGKFWFDRMIKEFGIEPAEKHY 448

Query: 313 TCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNP 372
            C+VDLL R+G + EA D++  M  +P  AI+  LLS C  +K+L+L E  A  +  L P
Sbjct: 449 VCIVDLLARSGLVEEANDMLASMQTEPTIAIWVILLSGCLNNKKLELGETIAKKILELRP 508

Query: 373 ANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVH 432
            +  G    ++N+YAA KKWD V  IR  MK++   K+PGYS IEV    H F   D+ H
Sbjct: 509 ED-IGVLALVSNLYAAAKKWDKVREIRKLMKDSGSKKVPGYSLIEVKGTRHAFVMEDQSH 567

Query: 433 PELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPL 492
           P+   I + + +L   M+  GYVP  EF  H + E   +QLL +HSE+LAIAFGL+    
Sbjct: 568 PQHREILKMVAKLNSEMRKLGYVPRTEFVYHDLDE---DQLLSYHSERLAIAFGLLNTSP 624

Query: 493 GTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           GT + + KNLRVCGDCH A KYIS I  REI+VRD  RFHHFKDG CSCGDYW
Sbjct: 625 GTRLVIIKNLRVCGDCHDAIKYISKIVDREIVVRDAKRFHHFKDGACSCGDYW 677



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 47/204 (23%), Positives = 97/204 (47%), Gaps = 7/204 (3%)

Query: 135 WTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQV 194
           W  ++S + + G          L++ R +     RPN+++ +  L  C+ L  L   + V
Sbjct: 76  WNGLLSAHSRAGA-----PGAALRVFRALPS-SARPNSTTFTLTLTACARLGDLDAAESV 129

Query: 195 HQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKG 254
               F +    D    + L+ +Y +CG +E+A ++F  + RKD V W+ M++G+   G+ 
Sbjct: 130 RVRAFAAGYGHDVFVCSALLHLYSRCGAMEEAIRVFDGMPRKDRVAWSTMVAGFVTAGRP 189

Query: 255 EKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTC 314
            +AL ++ +M++ G+  D +  V ++ AC   G   +G      ++  + +       T 
Sbjct: 190 VEALAMYSRMREHGVSDDEVVMVGVIQACMSTGNARIGASVHGRLLR-HCMRMDVVTTTS 248

Query: 315 MVDLLGRAGKLVEAVDLIKKMPFK 338
           +V +  + G L  A  + + MP++
Sbjct: 249 LVSMYAKNGHLDVACQVFRMMPYR 272


>gi|298205169|emb|CBI17228.3| unnamed protein product [Vitis vinifera]
          Length = 590

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 207/534 (38%), Positives = 303/534 (56%), Gaps = 42/534 (7%)

Query: 23  LKDAQELFDKIPQPDVVSYNIMLSCILLNS--DDVVAAFDFFQRLPIK-DTASWNTMISG 79
           L  A  +F     P++  +N ++  +  NS  +  V+ F    RL I+ D  +   ++  
Sbjct: 88  LDYALSIFRCFDHPNLFVFNALIRGLAENSRFEGSVSHFVLMLRLSIRPDRLTLPFVLKS 147

Query: 80  FVQKKNMAKARDLFLAMP----EKNSVSWSAMISGYIECGQLDKAVELFKVAP----VKS 131
                ++   R L   +     E +S    +++  Y++ G+L   ++LF  +P     +S
Sbjct: 148 VAALVDVGLGRCLHGGVMKLGLEFDSFVRVSLVDMYVKIGELGFGLQLFDESPQRNKAES 207

Query: 132 VVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLG 191
           ++ W                               G+RPN  ++ S LL C+ + +LQ+G
Sbjct: 208 ILLWN------------------------------GVRPNDLTVVSALLACTKIGALQVG 237

Query: 192 KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQH 251
           +++H  +  +    +    T L+ MY KCG+++ A ++F+E + KD++TW+ MI G+A H
Sbjct: 238 ERIHNYLSSNGFQLNRGIGTALVDMYAKCGNIKSASRVFVETKGKDLLTWSVMIWGWAIH 297

Query: 252 GKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDH 311
           G  ++AL+ F KMK  G+ PD + F+A+L AC+H+G VD G+ +F+SM  DY I     H
Sbjct: 298 GCFDQALQCFVKMKSAGINPDEVIFLAILTACSHSGNVDQGLNFFESMRLDYSIEPTMKH 357

Query: 312 YTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLN 371
           YT +VDLLGRAG+L EA+  I+ MP  P   I+G L  ACR HK +++AE  A  L  L 
Sbjct: 358 YTLIVDLLGRAGRLDEALSFIQSMPINPDFVIWGALFCACRAHKNIEMAELTAEKLLQLE 417

Query: 372 PANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRV 431
           P +  G YV L+N+YAA+ +W+DV R+R  MK   V K PG+S+IEV   VH F +GD  
Sbjct: 418 PKHP-GSYVFLSNVYAAVGRWEDVERVRTLMKNRGVEKDPGWSYIEVEGQVHSFVAGDHA 476

Query: 432 HPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVP 491
           H     I  KL+E+    K  GY+P+  + LH + EE KE  L  HSEKLA+AFGLI   
Sbjct: 477 HVRAEEISLKLEEITASAKQEGYMPETAWVLHNIEEEEKEDALGSHSEKLALAFGLISTA 536

Query: 492 LGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
            G+ IR+ KNLRVCGDCH   KY S + +REII+RD  RFHHFKDGTCSCGDYW
Sbjct: 537 PGSTIRIVKNLRVCGDCHSMMKYASKLSRREIILRDIKRFHHFKDGTCSCGDYW 590



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 60/241 (24%), Positives = 103/241 (42%), Gaps = 35/241 (14%)

Query: 92  LFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENS 151
           +FL     NS   + +IS       LD A+ +F+     ++  + A+I G       ENS
Sbjct: 63  IFLHNLFSNSRVVTQLISSSCSLKSLDYALSIFRCFDHPNLFVFNALIRGL-----AENS 117

Query: 152 WAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALT 211
             E  +    +M+ L IRP+  +L  VL   + L  + LG+ +H  V K  L  D+    
Sbjct: 118 RFEGSVSHFVLMLRLSIRPDRLTLPFVLKSVAALVDVGLGRCLHGGVMKLGLEFDSFVRV 177

Query: 212 PLISMYCKCGDLEDACKLFLEIQRKD----VVTWNAMISGYAQHGKGEKALRLFDKMKDE 267
            L+ MY K G+L    +LF E  +++    ++ WN                         
Sbjct: 178 SLVDMYVKIGELGFGLQLFDESPQRNKAESILLWN------------------------- 212

Query: 268 GMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVE 327
           G++P+ +T V+ LLAC   G + +G +   + ++  G        T +VD+  + G +  
Sbjct: 213 GVRPNDLTVVSALLACTKIGALQVG-ERIHNYLSSNGFQLNRGIGTALVDMYAKCGNIKS 271

Query: 328 A 328
           A
Sbjct: 272 A 272



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 58/251 (23%), Positives = 101/251 (40%), Gaps = 44/251 (17%)

Query: 193 QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHG 252
           Q+H  +F   L  ++  +T LIS  C    L+ A  +F      ++  +NA+I G A++ 
Sbjct: 58  QIHAQIFLHNLFSNSRVVTQLISSSCSLKSLDYALSIFRCFDHPNLFVFNALIRGLAENS 117

Query: 253 KGEKALRLFDKMKDEGMKPDSITF------VALLL-----ACNHAGLVDLGIQYFDSMVN 301
           + E ++  F  M    ++PD +T       VA L+      C H G++ LG++ FDS V 
Sbjct: 118 RFEGSVSHFVLMLRLSIRPDRLTLPFVLKSVAALVDVGLGRCLHGGVMKLGLE-FDSFVR 176

Query: 302 DYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP-------------FKPQPAIFGTLL 348
                        +VD+  + G+L   + L  + P              +P      + L
Sbjct: 177 -----------VSLVDMYVKIGELGFGLQLFDESPQRNKAESILLWNGVRPNDLTVVSAL 225

Query: 349 SACRVHKRLDLAE----FAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKE 404
            AC     L + E    + + N F LN     G    L ++YA        +R+ +  K 
Sbjct: 226 LACTKIGALQVGERIHNYLSSNGFQLN----RGIGTALVDMYAKCGNIKSASRVFVETKG 281

Query: 405 NNVVKMPGYSW 415
            +++      W
Sbjct: 282 KDLLTWSVMIW 292


>gi|296081589|emb|CBI20594.3| unnamed protein product [Vitis vinifera]
          Length = 572

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 213/539 (39%), Positives = 306/539 (56%), Gaps = 20/539 (3%)

Query: 13  LAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQR------LP 66
           L G       ++ A  +F  +  P++ ++N  L  +  NS     A  FF         P
Sbjct: 30  LIGACADHANVRQAALIFAHLASPNIFAHNATLKALAQNSH-WFHAIQFFNHQVSSPNAP 88

Query: 67  IKDTASWNTMI---SGFVQKKNMAKARDLFLAMP-EKNSVSWSAMISGYIECGQLDKAVE 122
             D  ++ +++   +G     N  K   +      E N    +++I  Y + G L  A  
Sbjct: 89  NPDEFTFTSVLKACAGLAHVVNGQKIHAMVTKQGFESNLFVRNSLIDMYFKAGYLLLARH 148

Query: 123 LFKVAPVK--SVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLG-IRPNASSLSSVL 179
           LF    V+  +VV W AMI+GY      +N    D +++ RMM   G + PN  +L SVL
Sbjct: 149 LFDEMFVRDRNVVCWNAMIAGY-----AQNEKYSDAIEVFRMMQQFGGVVPNDVTLVSVL 203

Query: 180 LGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVV 239
             C+HL +L LGK +   + +  +         L  MY KCG + +A ++F +++ +DV+
Sbjct: 204 PACAHLGALDLGKWIDGFISRREMALGLFLGNALADMYAKCGCITEARRVFNKMEERDVI 263

Query: 240 TWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSM 299
           +W+ +I G A +G  ++A   F +M D G KP+ + F+ LL AC HAGLV  G+  F++M
Sbjct: 264 SWSIIICGLAMYGHADEAFGCFYEMLDCGEKPNDVVFMGLLTACTHAGLVKKGLNCFNTM 323

Query: 300 VNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDL 359
             +YG++ K +HY C+VDLL RAG+L +A D+I  MP KP   I+G LL  CR+++    
Sbjct: 324 DKEYGVSPKVEHYGCVVDLLSRAGELDKAEDMISSMPMKPNVIIWGALLGGCRIYRDSGR 383

Query: 360 AEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVG 419
            +    ++  L+ ++ +G YV LAN+Y++M + DD A+ RL M+EN V+K PG SWIEV 
Sbjct: 384 GQRVVQHILELD-SDHSGSYVYLANVYSSMGRLDDAAKCRLRMRENGVLKTPGCSWIEVD 442

Query: 420 TVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSE 479
             VHEF  GD  HPE   I+  ++EL  +MKLAGY P  +  +H++ EE KE  L  HSE
Sbjct: 443 NTVHEFFMGDLSHPESNKIYSMIRELMWKMKLAGYKPKTDLVVHSIDEEEKEDALSIHSE 502

Query: 480 KLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGT 538
           KLAIAFGLI    GT IRV KNLR+C DCH A K IS I KREIIVRD +RFHHFKDG 
Sbjct: 503 KLAIAFGLISTSEGTTIRVVKNLRICNDCHDAAKIISGIVKREIIVRDRSRFHHFKDGA 561



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 62/264 (23%), Positives = 115/264 (43%), Gaps = 40/264 (15%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQ 63
           +  V WN+++AG+A Q  K  DA E+F  + Q            ++ N   +V+      
Sbjct: 158 RNVVCWNAMIAGYA-QNEKYSDAIEVFRMMQQ---------FGGVVPNDVTLVSVLPACA 207

Query: 64  RLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVEL 123
            L   D   W   I GF+ ++ MA    LFL          +A+   Y +CG + +A  +
Sbjct: 208 HLGALDLGKW---IDGFISRREMALG--LFLG---------NALADMYAKCGCITEARRV 253

Query: 124 FKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCS 183
           F     + V++W+ +I G   +G+     A++       M+  G +PN      +L  C+
Sbjct: 254 FNKMEERDVISWSIIICGLAMYGH-----ADEAFGCFYEMLDCGEKPNDVVFMGLLTACT 308

Query: 184 HLSSLQLGKQVHQLVFK----SPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK-DV 238
           H   ++ G      + K    SP  +    +  L+S   + G+L+ A  +   +  K +V
Sbjct: 309 HAGLVKKGLNCFNTMDKEYGVSPKVEHYGCVVDLLS---RAGELDKAEDMISSMPMKPNV 365

Query: 239 VTWNAMISG---YAQHGKGEKALR 259
           + W A++ G   Y   G+G++ ++
Sbjct: 366 IIWGALLGGCRIYRDSGRGQRVVQ 389


>gi|297805648|ref|XP_002870708.1| hypothetical protein ARALYDRAFT_493946 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297316544|gb|EFH46967.1| hypothetical protein ARALYDRAFT_493946 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1111

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 192/442 (43%), Positives = 277/442 (62%), Gaps = 7/442 (1%)

Query: 105  SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI 164
            +A+++ Y + G L  + +LF+   VK++V+W  MI       +++N  AE+GL    M  
Sbjct: 676  NALMNLYGKTGDLISSCKLFEDLSVKNLVSWNTMI-----VIHLQNGLAEEGLAYFNMSR 730

Query: 165  GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 224
             +G++P+ ++  +VL  C  +  ++L + +H L+       +T   T L+ +Y K G LE
Sbjct: 731  WVGLKPDQATFLAVLRVCEDIGVVRLSQGIHGLIMFCGFNANTCITTALLDLYAKLGRLE 790

Query: 225  DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 284
            D+  +FLEI   D + W AM++ YA HG G  A++ F+ M   G+ PD +TF  LL AC+
Sbjct: 791  DSSTVFLEITSPDSMAWTAMLAAYATHGYGRDAIKHFELMVHYGLSPDHVTFTHLLNACS 850

Query: 285  HAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIF 344
            H+GLV+ G  YF++M   Y I  + DHY+CMVDL+GR+G L +A  LIK+MP +P   ++
Sbjct: 851  HSGLVEEGRYYFETMSKRYRIEPRLDHYSCMVDLMGRSGLLQDAYGLIKEMPMEPSSGVW 910

Query: 345  GTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKE 404
            G LL ACRV+K   L   AA  LF L P +    Y+ L+NIY+A   W D +RIR  MK+
Sbjct: 911  GALLGACRVYKDTQLGTKAAKRLFELEPRDGRN-YIMLSNIYSASGLWKDASRIRNLMKQ 969

Query: 405  NNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLA-GYVPDLEFALH 463
              +V+  GYS+IE G  +H+F  GD  HPE   I +KLKE+ K+MK   G+    EF LH
Sbjct: 970  KGLVRASGYSYIEHGNKIHKFVVGDWSHPESEKIQKKLKEIRKKMKSELGFKSRTEFVLH 1029

Query: 464  AVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREI 523
             V E+VKE+++  HSEK+A+AFGL+ +    PI + KNLR+CGDCH   K IS IEKR I
Sbjct: 1030 DVDEDVKEEMINQHSEKIAMAFGLLVISPMEPIIIRKNLRICGDCHETAKAISLIEKRRI 1089

Query: 524  IVRDTTRFHHFKDGTCSCGDYW 545
            I+RD+ RFHHF +G+CSC DYW
Sbjct: 1090 IIRDSKRFHHFLEGSCSCRDYW 1111



 Score =  369 bits (946), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 189/462 (40%), Positives = 281/462 (60%), Gaps = 6/462 (1%)

Query: 76  MISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAW 135
           +IS + +   +     +F ++   + V  +AM++    CG +  A +LF+  P K  +AW
Sbjct: 157 LISLYAELGCLDSCHKVFNSVSYPDFVCRTAMVTACARCGDVAFARKLFEGMPEKDPIAW 216

Query: 136 TAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVH 195
            AMISGY + G      + + L L  +M   G++ N  S+ SVL  C+ L +L  G+  H
Sbjct: 217 NAMISGYAQVGE-----SREALNLFHLMQLEGVKVNGVSMISVLSACTQLGALDQGRWAH 271

Query: 196 QLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGE 255
             + ++ +       T L+ +Y KCGD++ A ++F  ++ K+V TW++ ++G A +G GE
Sbjct: 272 SYIERNKIKITVRLGTTLVDLYAKCGDMDKAMEVFWGMEEKNVYTWSSALNGLAMNGFGE 331

Query: 256 KALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCM 315
           K L+LF  MK +G+ P+++TFV++L  C+  G VD G ++FDSM N++GI  + DHY C+
Sbjct: 332 KCLKLFSLMKQDGVTPNAVTFVSVLRGCSVVGFVDEGQKHFDSMRNEFGIEPQLDHYGCL 391

Query: 316 VDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANA 375
           VDL  RAG+L +AV +I++MP K   A++ +LL A R++K L+L   A+  +  L  +N 
Sbjct: 392 VDLYARAGRLEDAVSIIQQMPMKAHAAVWSSLLHASRMYKNLELGVLASKKMLELETSN- 450

Query: 376 AGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPEL 435
            G YV L+NIYA    WD+V+ +R SMK   V K PG S +EV   VHEF  GD+ HP+ 
Sbjct: 451 HGAYVLLSNIYADSDDWDNVSHVRQSMKSKGVRKQPGCSVMEVNGEVHEFFVGDKSHPKY 510

Query: 436 VSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTP 495
             I    K++ +R++LAGY  D    +  + EE KE  L  HSEK AIAFG++ +    P
Sbjct: 511 NEIDAVWKDISRRLRLAGYKADTTPVMFDIDEEEKEDALCLHSEKAAIAFGIMSLKADVP 570

Query: 496 IRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDG 537
           IR+ KNLRVCGDCH+ +  IS I  REIIVRD  RFHHFKDG
Sbjct: 571 IRIVKNLRVCGDCHQVSMMISKIFNREIIVRDRNRFHHFKDG 612



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 67/217 (30%), Positives = 113/217 (52%), Gaps = 5/217 (2%)

Query: 159 LLRMMIG-LGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMY 217
           L RMM   +G RPN  +  S++  C H  + + G  +H LV KS + ++   +  L+++Y
Sbjct: 623 LSRMMRSEVGFRPNEVTFLSMISACVHGGNKEEGVCIHGLVMKSGVLEEVKVVNALMNLY 682

Query: 218 CKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFV 277
            K GDL  +CKLF ++  K++V+WN MI  + Q+G  E+ L  F+  +  G+KPD  TF+
Sbjct: 683 GKTGDLISSCKLFEDLSVKNLVSWNTMIVIHLQNGLAEEGLAYFNMSRWVGLKPDQATFL 742

Query: 278 ALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPF 337
           A+L  C   G+V L  Q    ++   G  A     T ++DL  + G+L ++  +  ++  
Sbjct: 743 AVLRVCEDIGVVRLS-QGIHGLIMFCGFNANTCITTALLDLYAKLGRLEDSSTVFLEIT- 800

Query: 338 KPQPAIFGTLLSACRVH--KRLDLAEFAAMNLFNLNP 372
            P    +  +L+A   H   R  +  F  M  + L+P
Sbjct: 801 SPDSMAWTAMLAAYATHGYGRDAIKHFELMVHYGLSP 837



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 90/363 (24%), Positives = 153/363 (42%), Gaps = 78/363 (21%)

Query: 117 LDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLS 176
           LD A ++   +   ++ A  +MI  + K    E S+  D    + +  G G++P+  +++
Sbjct: 64  LDYANQILDRSDKPTLFALNSMIRAHCKSPVPEKSF--DFYSRI-LSSGNGLKPDNYTVN 120

Query: 177 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMY------------------- 217
            ++  C+ L   + G QVH +  +     D    T LIS+Y                   
Sbjct: 121 FLVQACTGLGMRETGLQVHGMTIRRGFDNDPHVQTGLISLYAELGCLDSCHKVFNSVSYP 180

Query: 218 ------------CKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMK 265
                        +CGD+  A KLF  +  KD + WNAMISGYAQ G+  +AL LF  M+
Sbjct: 181 DFVCRTAMVTACARCGDVAFARKLFEGMPEKDPIAWNAMISGYAQVGESREALNLFHLMQ 240

Query: 266 DEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKL 325
            EG+K + ++ +++L AC   G +D G ++  S +    I       T +VDL  + G +
Sbjct: 241 LEGVKVNGVSMISVLSACTQLGALDQG-RWAHSYIERNKIKITVRLGTTLVDLYAKCGDM 299

Query: 326 VEAVD----------------------------------LIKKMPFKPQPAIFGTLLSAC 351
            +A++                                  L+K+    P    F ++L  C
Sbjct: 300 DKAMEVFWGMEEKNVYTWSSALNGLAMNGFGEKCLKLFSLMKQDGVTPNAVTFVSVLRGC 359

Query: 352 RVHKRLDLAE--FAAM-NLFNLNPA-NAAGCYVQLANIYAAMKKWDDVARI--RLSMKEN 405
            V   +D  +  F +M N F + P  +  GC   L ++YA   + +D   I  ++ MK +
Sbjct: 360 SVVGFVDEGQKHFDSMRNEFGIEPQLDHYGC---LVDLYARAGRLEDAVSIIQQMPMKAH 416

Query: 406 NVV 408
             V
Sbjct: 417 AAV 419



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 71/272 (26%), Positives = 115/272 (42%), Gaps = 59/272 (21%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G L    ++F+ +  PD V    M++       DV  A   F+ +P KD  +WN MISG+
Sbjct: 165 GCLDSCHKVFNSVSYPDFVCRTAMVTACA-RCGDVAFARKLFEGMPEKDPIAWNAMISGY 223

Query: 81  VQKKNMAKARDLFLAMP----EKNSVSWSAMISG-------------------------- 110
            Q     +A +LF  M     + N VS  +++S                           
Sbjct: 224 AQVGESREALNLFHLMQLEGVKVNGVSMISVLSACTQLGALDQGRWAHSYIERNKIKITV 283

Query: 111 ---------YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLR 161
                    Y +CG +DKA+E+F     K+V  W++ ++     G   N + E  LKL  
Sbjct: 284 RLGTTLVDLYAKCGDMDKAMEVFWGMEEKNVYTWSSALN-----GLAMNGFGEKCLKLFS 338

Query: 162 MMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTP-------LI 214
           +M   G+ PNA +  SVL GCS +  +  G    Q  F S   ++   + P       L+
Sbjct: 339 LMKQDGVTPNAVTFVSVLRGCSVVGFVDEG----QKHFDS--MRNEFGIEPQLDHYGCLV 392

Query: 215 SMYCKCGDLEDACKLFLEIQRK-DVVTWNAMI 245
            +Y + G LEDA  +  ++  K     W++++
Sbjct: 393 DLYARAGRLEDAVSIIQQMPMKAHAAVWSSLL 424



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 61/269 (22%), Positives = 119/269 (44%), Gaps = 26/269 (9%)

Query: 11  SVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLN--SDDVVAAFDFFQRLPIK 68
           + L     + G L  + +LF+ +   ++VS+N M+   L N  +++ +A F+  + + +K
Sbjct: 676 NALMNLYGKTGDLISSCKLFEDLSVKNLVSWNTMIVIHLQNGLAEEGLAYFNMSRWVGLK 735

Query: 69  -DTASWNTMIS-----GFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVE 122
            D A++  ++      G V+         +F      N+   +A++  Y + G+L+ +  
Sbjct: 736 PDQATFLAVLRVCEDIGVVRLSQGIHGLIMFCGF-NANTCITTALLDLYAKLGRLEDSST 794

Query: 123 LFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGC 182
           +F        +AWTAM++ Y   GY       D +K   +M+  G+ P+  + + +L  C
Sbjct: 795 VFLEITSPDSMAWTAMLAAYATHGY-----GRDAIKHFELMVHYGLSPDHVTFTHLLNAC 849

Query: 183 SHLSSLQLGKQVHQLVFK----SPLCKDTTALTPLISMYCKCGDLEDACKLFLEI-QRKD 237
           SH   ++ G+   + + K     P     + +  L+    + G L+DA  L  E+     
Sbjct: 850 SHSGLVEEGRYYFETMSKRYRIEPRLDHYSCMVDLMG---RSGLLQDAYGLIKEMPMEPS 906

Query: 238 VVTWNAMISG---YAQHGKGEKAL-RLFD 262
              W A++     Y     G KA  RLF+
Sbjct: 907 SGVWGALLGACRVYKDTQLGTKAAKRLFE 935


>gi|297792601|ref|XP_002864185.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297310020|gb|EFH40444.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 588

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 203/530 (38%), Positives = 313/530 (59%), Gaps = 18/530 (3%)

Query: 25  DAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRL------PIKDTASWNTMIS 78
           D++  F+  PQ    +++ ++SC   N    ++  +F +++      P        T   
Sbjct: 68  DSRRAFEDSPQKSATTWSSIISCFAQNELPWMS-LEFLRKMMAGSLRPDDHVLPSATKSC 126

Query: 79  GFVQKKNMAKARDLFLAMP---EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAW 135
           G + + ++ K+    L+M    + +    S+++  Y +CG++  A ++F   P+++VV W
Sbjct: 127 GILSRCDIGKSVHC-LSMKTGYDADVFVGSSLVDMYAKCGEIVYARKMFDEMPLRNVVTW 185

Query: 136 TAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVH 195
           + M+ GY + G  EN   E+ L L +  +   +  N  S S+V+  C++ + L+LG+Q+ 
Sbjct: 186 SGMMYGYAQMG--EN---EEALWLFKEALFENLAVNDYSFSTVISVCANSTLLELGRQIQ 240

Query: 196 QLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGE 255
            L  KS     +   + L+S+Y KCGDLE A ++F E+  +++  WNAM+   AQH   +
Sbjct: 241 GLCIKSSFDSSSFVGSSLVSLYSKCGDLEGAYQVFDEVPMRNLGIWNAMLKACAQHSHTQ 300

Query: 256 KALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCM 315
           K + LF +MK  GMKP+ ITF+ +L AC+HAGLVD G  YFD ++ +  I     HY  +
Sbjct: 301 KVIELFKRMKLSGMKPNFITFLNVLNACSHAGLVDEGKYYFD-LMKESRIEPTDKHYASL 359

Query: 316 VDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANA 375
           VD+LGRAGKL EA++++  MP  P  +++G LL++C +HK  +LA FAA  +F L P  +
Sbjct: 360 VDMLGRAGKLEEALEIVTNMPIDPTESVWGALLTSCTIHKNTELAAFAADKVFELGPV-S 418

Query: 376 AGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPEL 435
           +G ++ L+N YAA  +++D A+ R  +++    K  G SW+E    VH F +G+R H   
Sbjct: 419 SGMHISLSNAYAADGRFEDAAKARKLLRDRGEKKETGLSWVEERNKVHTFAAGERRHERS 478

Query: 436 VSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTP 495
             I+EKL EL + M+ AGYV D  + L  V  + K Q + +HSE+LAIAFGLI  P   P
Sbjct: 479 KEIYEKLAELGEEMEKAGYVADTSYVLREVDGDEKNQTIRYHSERLAIAFGLITFPADRP 538

Query: 496 IRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           IRV KNLRVCGDCH A K++S   +R IIVRD  RFH F+DG CSC DYW
Sbjct: 539 IRVMKNLRVCGDCHNAIKFMSICTRRVIIVRDNNRFHRFEDGKCSCNDYW 588



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 40/168 (23%), Positives = 74/168 (44%), Gaps = 1/168 (0%)

Query: 171 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 230
           N + +  +LL  +   S+  G Q+H  + KS L         LI+ Y K     D+ + F
Sbjct: 14  NYNQICDLLLSSARSRSIVKGLQLHGYIVKSGLSLIPLVANNLINFYSKSQLPFDSRRAF 73

Query: 231 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVD 290
            +  +K   TW+++IS +AQ+     +L    KM    ++PD     +   +C      D
Sbjct: 74  EDSPQKSATTWSSIISCFAQNELPWMSLEFLRKMMAGSLRPDDHVLPSATKSCGILSRCD 133

Query: 291 LGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 338
           +G +    +    G  A     + +VD+  + G++V A  +  +MP +
Sbjct: 134 IG-KSVHCLSMKTGYDADVFVGSSLVDMYAKCGEIVYARKMFDEMPLR 180


>gi|147811587|emb|CAN70294.1| hypothetical protein VITISV_005974 [Vitis vinifera]
          Length = 562

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 209/534 (39%), Positives = 314/534 (58%), Gaps = 16/534 (2%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCIL--LNSDDVVAAFDFFQRLPIK-DTASWNTMI 77
           G +  A  +F ++ +P    +N M+   +  +N+++ +  +       +K D  ++ T++
Sbjct: 36  GSMDYACSIFRQMDEPGSFZFNTMMRGHVKDMNTEEALITYKEMAERGVKPDNFTYPTLL 95

Query: 78  SGF-----VQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSV 132
                   V++     A  L L + E +    +++IS Y +CG++     +F+    +SV
Sbjct: 96  KACARLPAVEEGMQVHAHILKLGL-ENDVFVQNSLISMYGKCGEIGVCCAVFEQMNERSV 154

Query: 133 VAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGI-RPNASSLSSVLLGCSHLSSLQLG 191
            +W+A+I+ +   G     W+ D L+LL  M   G  R   S L SVL  C+HL +L LG
Sbjct: 155 ASWSALITAHASLGM----WS-DCLRLLGDMSNEGYWRAEESILVSVLSACTHLGALDLG 209

Query: 192 KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQH 251
           + VH  + ++    +    T LI MY KCG L     LF ++ +K+ ++++ MISG A H
Sbjct: 210 RSVHGFLLRNVSGLNVIVETSLIEMYLKCGXLYKGMCLFQKMAKKNKLSYSVMISGLAMH 269

Query: 252 GKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDH 311
           G G + LR+F +M ++G++PD I +V +L AC+HAGLV  G+Q F+ M  ++GI     H
Sbjct: 270 GYGREGLRIFTEMLEQGLEPDDIVYVGVLNACSHAGLVQEGLQCFNRMKLEHGIEPTIQH 329

Query: 312 YTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLN 371
           Y CMVDL+GRAGK+ EA++LIK MP +P   ++ +LLSA +VH  L   E AA  LF L+
Sbjct: 330 YGCMVDLMGRAGKIDEALELIKSMPMEPNDVLWRSLLSASKVHNNLQAGEIAAKQLFKLD 389

Query: 372 PANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRV 431
              A+  YV L+N+YA  ++W+DVAR R +M    + + PG+S +EV   +H F S D  
Sbjct: 390 SQKASD-YVVLSNMYAQAQRWEDVARTRTNMFSKGLSQRPGFSLVEVKRKMHRFVSQDAG 448

Query: 432 HPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVP 491
           HP+  S++E L ++E ++K  GY PD    L  V EE K+Q L  HS+KLAIA+ LI   
Sbjct: 449 HPQSESVYEMLYQMEWQLKFEGYXPDTTQVLCDVDEEEKKQRLSGHSQKLAIAYALIHTS 508

Query: 492 LGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
            G+P+R+ +NLR+C DCH  TK IS I  REI VRD  RFHHFKDG CSC DYW
Sbjct: 509 QGSPVRIVRNLRMCNDCHTYTKLISIIFDREITVRDRHRFHHFKDGACSCRDYW 562


>gi|297810061|ref|XP_002872914.1| hypothetical protein ARALYDRAFT_327675 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297318751|gb|EFH49173.1| hypothetical protein ARALYDRAFT_327675 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1305

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 200/494 (40%), Positives = 299/494 (60%), Gaps = 18/494 (3%)

Query: 62   FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISGYIECGQL 117
            F  +  K+  +WN++ISG      + +A  L   M ++    N+V+W++++SGY   G+ 
Sbjct: 820  FDMMDEKNIVAWNSLISGLSYTGLLKEAEALISRMEKEGIKSNAVTWNSLVSGYATWGKT 879

Query: 118  DKAV----ELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNAS 173
            +KA+    ++ K     +VV+WTA++SG  K G   N     GLK+   M   G+ PN++
Sbjct: 880  EKALAVVGKMKKNGVEPNVVSWTAILSGCSKNGNFGN-----GLKIFLKMQEEGVSPNSA 934

Query: 174  SLSSVL--LGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFL 231
            ++SS+L  LGC  LS L  GK+VH    K+ L +D    T L+ MY K GDL+ A ++F 
Sbjct: 935  TISSLLRILGC--LSLLYSGKEVHSFCLKNNLTRDAHVATALVDMYAKSGDLQSAAEIFW 992

Query: 232  EIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDL 291
             I+ K + +WN MI GYA   +GE+ + +F+ M + G++PD+ITF ++L  C ++GLV  
Sbjct: 993  GIKNKPLASWNCMIMGYAMFRRGEEGIAVFNAMLEAGIEPDAITFTSVLSVCKNSGLVRE 1052

Query: 292  GIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSAC 351
            G +YFD M + YG+    +H +CMV+LLGR+G L EA D I+ MP KP   I+G  LS+C
Sbjct: 1053 GWKYFDLMRSHYGVIPTIEHCSCMVELLGRSGYLDEAWDFIRTMPLKPDATIWGAFLSSC 1112

Query: 352  RVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMP 411
            ++H+ L+LAE A   L  L P N+A  Y+ + N+Y+ + +W DV RIR SM  N V    
Sbjct: 1113 KIHRDLELAEIAWKRLQVLEPHNSAN-YMMMINLYSNLNRWGDVERIRNSMSNNRVRVQD 1171

Query: 412  GYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKE 471
             +SWI++   VH F +  + HP+   I+ +L +L   MK +GY+PD       V E  KE
Sbjct: 1172 LWSWIQIDQTVHIFYAEGKAHPDEGEIYFELYKLVSEMKKSGYMPDTRCIHQNVSESEKE 1231

Query: 472  QLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRF 531
            +LL+ H+EKLA+ +GLIK     PIRV KN  +C DCH   KYIS +  REI++++  R 
Sbjct: 1232 KLLMGHTEKLAMTYGLIKKKGIAPIRVVKNTNLCSDCHTVAKYISVLRNREIVLQEGARV 1291

Query: 532  HHFKDGTCSCGDYW 545
            HHF+DG CSC + W
Sbjct: 1292 HHFRDGKCSCNNSW 1305



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 94/387 (24%), Positives = 170/387 (43%), Gaps = 83/387 (21%)

Query: 11  SVLAGFAKQRGKLKDAQELFDKIPQPDVVSYN--IMLSCILLNSDDVVAAFDFFQ----- 63
           S L GF  +   L  A ++FD++P+ D +++N  +M++    N +  V  F   +     
Sbjct: 564 SALMGFYGRCVSLDLANKIFDEMPKRDDLAWNEIVMVNLQSGNWEKAVKLFRVMRFSGAK 623

Query: 64  ------------------------------RLPIKDTASW-NTMISGFVQKKNMAKARDL 92
                                         RL  +   S  N++I  + +   +  +R +
Sbjct: 624 AYDSTMVKLLQVCSNKEGFAQGRQIHGYVLRLGFESNVSMCNSLIVMYSRNGKLESSRKV 683

Query: 93  FLAMPEKNSVSWSAMISGYIECGQLDKAV----ELFKVAPVKSVVAWTAMISGYMKFGYV 148
           F +M ++N  SW++++S Y   G +D A+    E+        +V W +++S     GY 
Sbjct: 684 FNSMVDRNLSSWNSIVSSYTRLGYVDDAMGLLDEMETCGLKPDIVTWNSLLS-----GYA 738

Query: 149 ENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTT 208
             + + D + +L+ +   G++PN SS+SS+L        ++LGK +H  V ++ L  D  
Sbjct: 739 SKALSRDAIAVLKRIQIAGLKPNTSSISSLLQAVYEPGLVKLGKAIHGYVIRNQLWYDVY 798

Query: 209 ALTPLISMYCKCGDLEDACKLFLEIQRKDV------------------------------ 238
             T LI MY K G L  A  +F  +  K++                              
Sbjct: 799 VETTLIDMYIKTGYLPYARMVFDMMDEKNIVAWNSLISGLSYTGLLKEAEALISRMEKEG 858

Query: 239 -----VTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGI 293
                VTWN+++SGYA  GK EKAL +  KMK  G++P+ +++ A+L  C+  G    G+
Sbjct: 859 IKSNAVTWNSLVSGYATWGKTEKALAVVGKMKKNGVEPNVVSWTAILSGCSKNGNFGNGL 918

Query: 294 QYFDSMVNDYGIAAKPDHYTCMVDLLG 320
           + F  M  + G++      + ++ +LG
Sbjct: 919 KIFLKM-QEEGVSPNSATISSLLRILG 944



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 76/326 (23%), Positives = 156/326 (47%), Gaps = 17/326 (5%)

Query: 89  ARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYV 148
           A  +F  MP+++ ++W+ ++   ++ G  +KAV+LF+V       A+ + +   ++    
Sbjct: 579 ANKIFDEMPKRDDLAWNEIVMVNLQSGNWEKAVKLFRVMRFSGAKAYDSTMVKLLQVCSN 638

Query: 149 ENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTT 208
           +  +A+ G ++   ++ LG   N S  +S+++  S    L+  ++    VF S + ++ +
Sbjct: 639 KEGFAQ-GRQIHGYVLRLGFESNVSMCNSLIVMYSRNGKLESSRK----VFNSMVDRNLS 693

Query: 209 ALTPLISMYCKCGDLEDACKLFLEIQ----RKDVVTWNAMISGYAQHGKGEKALRLFDKM 264
           +   ++S Y + G ++DA  L  E++    + D+VTWN+++SGYA       A+ +  ++
Sbjct: 694 SWNSIVSSYTRLGYVDDAMGLLDEMETCGLKPDIVTWNSLLSGYASKALSRDAIAVLKRI 753

Query: 265 KDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVND---YGIAAKPDHYTCMVDLLGR 321
           +  G+KP++ +  +LL A    GLV LG      ++ +   Y +  +    T ++D+  +
Sbjct: 754 QIAGLKPNTSSISSLLQAVYEPGLVKLGKAIHGYVIRNQLWYDVYVE----TTLIDMYIK 809

Query: 322 AGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQ 381
            G L  A  +   M  K   A + +L+S       L  AE     +      + A  +  
Sbjct: 810 TGYLPYARMVFDMMDEKNIVA-WNSLISGLSYTGLLKEAEALISRMEKEGIKSNAVTWNS 868

Query: 382 LANIYAAMKKWDDVARIRLSMKENNV 407
           L + YA   K +    +   MK+N V
Sbjct: 869 LVSGYATWGKTEKALAVVGKMKKNGV 894



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 76/306 (24%), Positives = 130/306 (42%), Gaps = 40/306 (13%)

Query: 107 MISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGL 166
           +I+ Y+E G+   A  +F +   ++ V+W   +     FG  +    E+ ++L       
Sbjct: 463 LITRYLEFGEFGYASAVFFLGFPRNQVSWRDFLEKAEDFGVEKYKVLEEFVRLQNK---- 518

Query: 167 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPL-CKDTTALTPLISMYCKCGDLED 225
           G+  +   L+ V   C+ L    LG  +H  + K  L   DT  ++ L+  Y +C  L+ 
Sbjct: 519 GVNFDEVVLAMVFRICAVLMYRFLGFTIHGGLIKRGLDNSDTRVVSALMGFYGRCVSLDL 578

Query: 226 ACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN- 284
           A K+F E+ ++D + WN ++    Q G  EKA++LF  M+  G K    T V LL  C+ 
Sbjct: 579 ANKIFDEMPKRDDLAWNEIVMVNLQSGNWEKAVKLFRVMRFSGAKAYDSTMVKLLQVCSN 638

Query: 285 ----------HAGLVDLGIQYFDSMVND----YGIAAKPDH----YTCMVDL-------- 318
                     H  ++ LG +   SM N     Y    K +     +  MVD         
Sbjct: 639 KEGFAQGRQIHGYVLRLGFESNVSMCNSLIVMYSRNGKLESSRKVFNSMVDRNLSSWNSI 698

Query: 319 ---LGRAGKLVEAVDLIKKMP---FKPQPAIFGTLLS--ACRVHKRLDLAEFAAMNLFNL 370
                R G + +A+ L+ +M     KP    + +LLS  A +   R  +A    + +  L
Sbjct: 699 VSSYTRLGYVDDAMGLLDEMETCGLKPDIVTWNSLLSGYASKALSRDAIAVLKRIQIAGL 758

Query: 371 NPANAA 376
            P  ++
Sbjct: 759 KPNTSS 764


>gi|125557337|gb|EAZ02873.1| hypothetical protein OsI_25005 [Oryza sativa Indica Group]
          Length = 651

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 196/492 (39%), Positives = 293/492 (59%), Gaps = 20/492 (4%)

Query: 57  AAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPE-KNSVSWSAMISGYIECG 115
           AA D F R         N ++  +    ++   R +F  +P  ++ ++W+ +++GY+  G
Sbjct: 177 AAGDLFVR---------NALVHFYGVSGDVGAMRRVFDELPRVRDVLTWNEVLAGYVRAG 227

Query: 116 QLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSL 175
            +  A E+F   PV+  ++W+ ++ GY+K         E  L + R M+  G+RPN +++
Sbjct: 228 MMTVAREVFDEMPVRDEISWSTLVGGYVK-----EEELEVALGVFRNMVEQGVRPNQAAV 282

Query: 176 SSVLLGCSHLSSLQLGKQVHQLVFKS--PLCKDTTALTPLISMYCKCGDLEDACKLFLEI 233
            + L   + L  L+ GK VH +V +S  P+C +  A   L+ MY KCG +  A ++F  +
Sbjct: 283 VTALSAAARLGLLEHGKFVHNVVQRSGMPVCMNVGA--ALVDMYAKCGCVAVAREVFDGM 340

Query: 234 QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGI 293
           +R+DV  WNAMI G A HG G  A+ LF++   EG+ P ++TFV +L  C+ +GLV  G 
Sbjct: 341 RRRDVFAWNAMICGLAAHGLGRDAVELFERFISEGLSPTNVTFVGVLNGCSRSGLVAEGR 400

Query: 294 QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRV 353
           +YF  +V  Y I  + +HY CMVDLLGRAG + EA++LI+ M   P P ++GT+LS+C+ 
Sbjct: 401 RYFKLIVEKYRIEPEMEHYGCMVDLLGRAGLVPEAIELIEGMHIAPDPVLWGTILSSCKT 460

Query: 354 HKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGY 413
           H  +DL       L  L+P + +G YV L+ IYA   KWD+V  +R  M      K  G+
Sbjct: 461 HGLVDLGVSVGNKLIELDPTH-SGYYVLLSGIYAKANKWDEVREVRKLMSSRGTNKSAGW 519

Query: 414 SWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQL 473
           S +E    VH+F  GD  H + V I++ L  + KR+  AGYVPD+   LH +GEE K   
Sbjct: 520 SLMEAHGKVHKFLVGDTYHKDSVQIYDTLDMINKRLTEAGYVPDVSSVLHDIGEEEKVHA 579

Query: 474 LLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHH 533
           +  HSE+LAIA+G I +  G+PIR+ KNLRVCGDCH  +K ++ + +REIIVRD +RFHH
Sbjct: 580 VKVHSERLAIAYGFIVLEAGSPIRIVKNLRVCGDCHEFSKMVTMVFQREIIVRDGSRFHH 639

Query: 534 FKDGTCSCGDYW 545
            K+G CSC DYW
Sbjct: 640 MKEGKCSCLDYW 651



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/178 (23%), Positives = 75/178 (42%), Gaps = 33/178 (18%)

Query: 190 LGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR-KDVVTWNAMISGY 248
           LG  VH L  K+    D      L+  Y   GD+    ++F E+ R +DV+TWN +++GY
Sbjct: 164 LGSHVHALAVKAGAAGDLFVRNALVHFYGVSGDVGAMRRVFDELPRVRDVLTWNEVLAGY 223

Query: 249 AQHG-------------------------------KGEKALRLFDKMKDEGMKPDSITFV 277
            + G                               + E AL +F  M ++G++P+    V
Sbjct: 224 VRAGMMTVAREVFDEMPVRDEISWSTLVGGYVKEEELEVALGVFRNMVEQGVRPNQAAVV 283

Query: 278 ALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335
             L A    GL++ G ++  ++V   G+    +    +VD+  + G +  A ++   M
Sbjct: 284 TALSAAARLGLLEHG-KFVHNVVQRSGMPVCMNVGAALVDMYAKCGCVAVAREVFDGM 340


>gi|357509743|ref|XP_003625160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|124360204|gb|ABN08217.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355500175|gb|AES81378.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 596

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 219/551 (39%), Positives = 312/551 (56%), Gaps = 47/551 (8%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQE----LFDKIPQPDVVSYNIMLSCILLNSDDVVAAF 59
           K+   W+SV++ FA+    L         L   +P  D +  +   SC +L+S       
Sbjct: 84  KSATTWSSVISSFAQNDLPLLSLNYFRLMLRQGVPPDDHIFPSATKSCGILSS------- 136

Query: 60  DFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDK 119
                LP+        M+  F  K   A   D+F+          S++I  Y +CG +  
Sbjct: 137 -----LPVAK------MLHCFALKT--AYHLDIFVG---------SSVIDMYAKCGDICY 174

Query: 120 AVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI----GLGIRPNASSL 175
           A  +F   P ++VV+W+ +I GY++ G  + S     L+L +  +      G+  N  +L
Sbjct: 175 AHNVFDEMPYRNVVSWSGLIYGYVQLGEDDES-----LRLFKRFLVEEENEGV--NDFTL 227

Query: 176 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR 235
           SSVL  C   + LQ+G+ +H L FK+         + LIS+Y KCG +E+A  +F E+  
Sbjct: 228 SSVLRVCGGSTLLQMGRLIHGLSFKTSFDSSCFVASSLISLYSKCGVVEEAYDVFEEVTV 287

Query: 236 KDVVTWNAMISGYAQHGKGEKALRLFDKMKD-EGMKPDSITFVALLLACNHAGLVDLGIQ 294
           +++  WNAM+   AQH   +K   LFDKMK   GMK + ITF+ +L AC+HAGLV+ G  
Sbjct: 288 RNLGMWNAMLIACAQHAHTDKTFELFDKMKSVGGMKANFITFLCVLYACSHAGLVEKGKY 347

Query: 295 YFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVH 354
           YF+ ++ DYGI     HY+ MVDLLGRAGKL +AV LI++MP +P  +++G LL+ CR+H
Sbjct: 348 YFE-LMKDYGIEPGTQHYSTMVDLLGRAGKLNDAVKLIEEMPMEPTESVWGALLTGCRLH 406

Query: 355 KRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYS 414
               LA + A  +  L    ++G +V L+N YAA  +W++ A+ R  M++  + K  G S
Sbjct: 407 GNTKLASYVADRVSELGSV-SSGLHVMLSNAYAAAGRWEEAAKARKMMRDRGIKKETGLS 465

Query: 415 WIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLL 474
           W+E G  +H F +GDR H + V I++KL EL + M  AGYV D  F L  V  E K + +
Sbjct: 466 WVEEGNRIHTFAAGDRSHAKSVEIYDKLDELGEEMDKAGYVADTSFVLKEVDGEEKSRSI 525

Query: 475 LFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHF 534
            +HSE+LAIAFG I  P G PIRV KNLRVCGDCH A K+IS    R IIVRD  RFH F
Sbjct: 526 RYHSERLAIAFGFITFPHGQPIRVMKNLRVCGDCHTAIKFISKCTGRVIIVRDNNRFHRF 585

Query: 535 KDGTCSCGDYW 545
           +DG C+CGDYW
Sbjct: 586 EDGKCTCGDYW 596



 Score = 43.5 bits (101), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 39/174 (22%), Positives = 78/174 (44%), Gaps = 9/174 (5%)

Query: 169 RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK 228
           +P   +L + LL  +   SL  G Q+H  + K  L         LI+ Y K      + +
Sbjct: 17  QPLYRNLCNTLLSLTFSRSLPKGLQLHAHIIKLGLQTIPLLSHHLINFYSKTHLPYSSLQ 76

Query: 229 LFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGL 288
           +F +   K   TW+++IS +AQ+     +L  F  M  +G+ PD   F +   +C     
Sbjct: 77  IFHDSPHKSATTWSSVISSFAQNDLPLLSLNYFRLMLRQGVPPDDHIFPSATKSCGILSS 136

Query: 289 VDLGIQYFDSMVNDYGI--AAKPDHY--TCMVDLLGRAGKLVEAVDLIKKMPFK 338
           + +       M++ + +  A   D +  + ++D+  + G +  A ++  +MP++
Sbjct: 137 LPVA-----KMLHCFALKTAYHLDIFVGSSVIDMYAKCGDICYAHNVFDEMPYR 185


>gi|357167019|ref|XP_003580964.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Brachypodium distachyon]
          Length = 861

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 205/549 (37%), Positives = 308/549 (56%), Gaps = 31/549 (5%)

Query: 9   WNSVLAGFAKQRGKLKDAQELFDKIPQ------PDVVSYNIMLSCI---LLNSDDVVAAF 59
           WN+++ G+A+  G  ++A ELF ++         +     ++ +C    +    + V  +
Sbjct: 332 WNAMICGYAQHGGMDEEAIELFSRMEAEAGCAPSETTMAGVLPACARSEVFTGKEAVHGY 391

Query: 60  DFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDK 119
              +R    +    N ++  + +   M +A  +F  +  ++ VSW+ +I+G I  G + +
Sbjct: 392 -VVKRDMASNRFVQNALMDMYARLGRMDEAHTIFAMIDLRDIVSWNTLITGCIVQGLISE 450

Query: 120 AVELFKVAPVKSVVA-WTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSV 178
           A +L +   + S  A    M+ G        +  + DG + +         PN  +L ++
Sbjct: 451 AFQLVREMQLPSSAASGETMLEG--------DDTSVDGQRCM---------PNNITLMTL 493

Query: 179 LLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDV 238
           L GC+ L++   GK++H    +  L  D    + L+ MY KCG L  A  +F  + R++V
Sbjct: 494 LPGCAVLAAPARGKEIHGYAVRHALESDLAVGSALVDMYAKCGCLALARAVFDRLPRRNV 553

Query: 239 VTWNAMISGYAQHGKGEKALRLFDKMKDEG-MKPDSITFVALLLACNHAGLVDLGIQYFD 297
           +TWN +I  Y  HG G++AL LFD+M   G   P+ +TF+A L AC+H+GLVD G++ F 
Sbjct: 554 ITWNVLIMAYGMHGLGDEALALFDRMVANGEATPNEVTFIAALAACSHSGLVDRGLELFQ 613

Query: 298 SMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKPQPAIFGTLLSACRVHKR 356
            M  DYG    P  + C+VD+LGRAG+L EA  +I  M P + Q + + T+L ACR+H+ 
Sbjct: 614 GMKRDYGFEPTPYLHACVVDVLGRAGRLDEAYGIISSMAPGEHQVSAWSTMLGACRLHRN 673

Query: 357 LDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWI 416
           + L   AA  LF L P + A  YV L NIY+A   W++   +R  M++  V K PG SWI
Sbjct: 674 VKLGRIAAERLFELEP-DEASHYVLLCNIYSAAGLWENSTEVRGMMRQRGVAKEPGCSWI 732

Query: 417 EVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLF 476
           E+   +H F +G+  HPE   +H  +  L +RM+  GYVPD    LH V E  K  +L +
Sbjct: 733 ELDGAIHRFMAGESAHPESAQVHAHMDALWERMRREGYVPDTSCVLHDVDEAEKAAMLRY 792

Query: 477 HSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKD 536
           HSEKLAIAFGL++ P G  IRV KNLRVC DCH A K+IS +  REI++RD  RFHHF+D
Sbjct: 793 HSEKLAIAFGLLRAPPGATIRVAKNLRVCNDCHEAAKFISRMVGREIVLRDVRRFHHFRD 852

Query: 537 GTCSCGDYW 545
           GTCSCGDYW
Sbjct: 853 GTCSCGDYW 861



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 81/284 (28%), Positives = 138/284 (48%), Gaps = 20/284 (7%)

Query: 105 SAMISGYIECGQLDKAVELFKVAP--VKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRM 162
           +A+++ Y  CG LD A+ LF   P  ++  V++ ++IS    F      W    L  LR 
Sbjct: 89  NALLTAYARCGDLDAALALFAATPPDLRDAVSYNSLISALCLF----RRWGH-ALDALRD 143

Query: 163 MIGLGIRPNASSLSSVLLGCSHLSSL--QLGKQVHQLVFKSPLC---KDTTALTPLISMY 217
           M+      ++ +L SVLL CSHL+    +LG++ H    K       ++      L+SMY
Sbjct: 144 MLA-DHEVSSFTLVSVLLACSHLADQGHRLGREAHAFALKHGFLDKGRERFPFNALLSMY 202

Query: 218 CKCGDLEDACKLFLEIQRK--DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSIT 275
            + G ++DA +LF        D+VTWN MIS   Q G+ E+A+++   M   G++PD +T
Sbjct: 203 ARLGLVDDAQRLFFSSGAGVGDLVTWNTMISLLVQGGRCEEAVQVLYDMVALGVRPDGVT 262

Query: 276 FVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335
           F + L AC+   L+ +G +    ++ D  +AA     + +VD+     ++  A  +   +
Sbjct: 263 FASALPACSRLELLGVGREVHAFVLKDDDLAANSFVASALVDMYASNEQVSHARRVFDMV 322

Query: 336 P-FKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGC 378
           P    Q  ++  ++     H  +D     A+ LF+   A  AGC
Sbjct: 323 PEHGRQLGMWNAMICGYAQHGGMD---EEAIELFSRMEAE-AGC 362



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 64/270 (23%), Positives = 127/270 (47%), Gaps = 18/270 (6%)

Query: 9   WNSVLAGFAKQRGKLKDAQELF--DKIPQPDVVSYNIMLSCILLNS---DDVVAAFDFFQ 63
           +N++L+ +A+  G + DAQ LF        D+V++N M+S ++      + V   +D   
Sbjct: 195 FNALLSMYARL-GLVDDAQRLFFSSGAGVGDLVTWNTMISLLVQGGRCEEAVQVLYDMVA 253

Query: 64  RLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPE-----KNSVSWSAMISGYIECGQLD 118
                D  ++ + +    + + +   R++   + +      NS   SA++  Y    Q+ 
Sbjct: 254 LGVRPDGVTFASALPACSRLELLGVGREVHAFVLKDDDLAANSFVASALVDMYASNEQVS 313

Query: 119 KAVELFKVAPV--KSVVAWTAMISGYMKFGYVENSWAEDGLKLL-RMMIGLGIRPNASSL 175
            A  +F + P   + +  W AMI GY + G ++    E+ ++L  RM    G  P+ +++
Sbjct: 314 HARRVFDMVPEHGRQLGMWNAMICGYAQHGGMD----EEAIELFSRMEAEAGCAPSETTM 369

Query: 176 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR 235
           + VL  C+        + VH  V K  +  +      L+ MY + G +++A  +F  I  
Sbjct: 370 AGVLPACARSEVFTGKEAVHGYVVKRDMASNRFVQNALMDMYARLGRMDEAHTIFAMIDL 429

Query: 236 KDVVTWNAMISGYAQHGKGEKALRLFDKMK 265
           +D+V+WN +I+G    G   +A +L  +M+
Sbjct: 430 RDIVSWNTLITGCIVQGLISEAFQLVREMQ 459


>gi|297739912|emb|CBI30094.3| unnamed protein product [Vitis vinifera]
          Length = 614

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 194/463 (41%), Positives = 292/463 (63%), Gaps = 16/463 (3%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  K  V+WN+++ G+A Q G++  A  LF+K+P+ +VVS+N ++S +L     +  A  
Sbjct: 156 MPNKNVVSWNTMIDGYA-QNGRIDSAMYLFEKMPERNVVSWNTVMS-MLAQCGRIEEARR 213

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
            F R+P +D  SW  MI+G + +     A DLF  MPE++  SW+ MI+G I+ G L +A
Sbjct: 214 LFDRMPERDVISWTAMIAGLLDE-----ALDLFERMPERDLPSWNTMITGLIQNGDLRRA 268

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLL-RMMIGLGIRPNASSLSSVL 179
            +LF   P K+V++WT MI+G ++ G      +E+ LK+  RM+   G +PN  +  SVL
Sbjct: 269 RKLFNEMPKKNVISWTTMITGCVQEGE-----SEEALKIFSRMLSTNGAKPNQGTFVSVL 323

Query: 180 LGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLE--IQRKD 237
             CS+L+ L  G+QVHQ++ K+     T  ++ LI+MY KCG+L  A K+F +    ++D
Sbjct: 324 GACSNLAGLGEGQQVHQIISKTVYQDSTFVVSALINMYSKCGELGTARKMFDDGMTSQRD 383

Query: 238 VVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFD 297
           +V+WN +I+ YA HG G++A+  F +M+  G KPD +T+V LL AC+HAGLV+ G++YFD
Sbjct: 384 LVSWNGIIAAYAHHGYGKEAINFFKEMRKSGFKPDDVTYVGLLSACSHAGLVEEGLKYFD 443

Query: 298 SMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRL 357
            +V D  I  + DHY C+VDL GRAG+L EA   I+++  KP   ++G LL+ C VH  +
Sbjct: 444 ELVKDRSILVREDHYACLVDLCGRAGRLKEAFGFIERLETKPSARVWGALLAGCNVHANV 503

Query: 358 DLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIE 417
            + + AA  L  + P N AG Y+ L+NIYA+  KW + AR+RL MK+  + K PG SWIE
Sbjct: 504 KIGKQAAKKLLEVEPEN-AGTYLLLSNIYASTGKWREAARVRLKMKDKGLKKQPGCSWIE 562

Query: 418 VGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEF 460
           VG  VH F  GD+ H +   I+  L++L  +MK AGY P+ +F
Sbjct: 563 VGNRVHVFVVGDKSHSQSKLIYSLLRDLHSKMKKAGYEPNNDF 605



 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 101/366 (27%), Positives = 163/366 (44%), Gaps = 85/366 (23%)

Query: 69  DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELF-KVA 127
           + A  N MI+   +   + +AR LF  M E + ++W+ +ISGYI+CG +++A  LF +V 
Sbjct: 66  NVARCNWMITNLSKDGRIMEARRLFDEMREPDVITWTTVISGYIKCGMIEEARRLFDRVD 125

Query: 128 PVKSVVAWTAMISGYMKF--------------------------GYVENSWAEDGLKLLR 161
             K+VV WTAM+ GY++                           GY +N   +  + L  
Sbjct: 126 AKKNVVTWTAMVGGYIRSNKISDAEKLFNEMPNKNVVSWNTMIDGYAQNGRIDSAMYLFE 185

Query: 162 MMIGLGIRPNASSLSSVLLGCSHLSSLQ--------------------LGKQVHQLVFKS 201
            M    +  + +++ S+L  C  +   +                    L  +   L  + 
Sbjct: 186 KMPERNV-VSWNTVMSMLAQCGRIEEARRLFDRMPERDVISWTAMIAGLLDEALDLFERM 244

Query: 202 PLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLF 261
           P  +D  +   +I+   + GDL  A KLF E+ +K+V++W  MI+G  Q G+ E+AL++F
Sbjct: 245 PE-RDLPSWNTMITGLIQNGDLRRARKLFNEMPKKNVISWTTMITGCVQEGESEEALKIF 303

Query: 262 DKM-KDEGMKPDSITFVALLLACNHAGLVDLGIQ---------YFDS------MVNDY-- 303
            +M    G KP+  TFV++L AC++   +  G Q         Y DS      ++N Y  
Sbjct: 304 SRMLSTNGAKPNQGTFVSVLGACSNLAGLGEGQQVHQIISKTVYQDSTFVVSALINMYSK 363

Query: 304 ----GIAAK--PDHYTCMVDLLGRAGKLV---------EAVDLIKKM---PFKPQPAIFG 345
               G A K   D  T   DL+   G +          EA++  K+M    FKP    + 
Sbjct: 364 CGELGTARKMFDDGMTSQRDLVSWNGIIAAYAHHGYGKEAINFFKEMRKSGFKPDDVTYV 423

Query: 346 TLLSAC 351
            LLSAC
Sbjct: 424 GLLSAC 429


>gi|356577722|ref|XP_003556972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Glycine max]
          Length = 820

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 203/547 (37%), Positives = 309/547 (56%), Gaps = 51/547 (9%)

Query: 42  NIMLSCILLNSDDVVAAFD----FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP 97
           ++ + C L++     AA +     F  +   +  SW  +ISG+VQ +   +A  LF  M 
Sbjct: 282 DVFVGCTLVDMYAKSAAVENSRKIFNTMLHHNVMSWTALISGYVQSRQEQEAIKLFCNML 341

Query: 98  E----KNSVSWSA-----------------------------------MISGYIECGQLD 118
                 N  ++S+                                   +I+ Y   G ++
Sbjct: 342 HGHVTPNCFTFSSVLKACASLPDFGIGKQLHGQTIKLGLSTINCVGNSLINMYARSGTME 401

Query: 119 KAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSV 178
            A + F +   K+++++        K    + S+  +         G+G  P   + + +
Sbjct: 402 CARKAFNILFEKNLISYNTAADANAKALDSDESFNHE-----VEHTGVGASP--FTYACL 454

Query: 179 LLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDV 238
           L G + + ++  G+Q+H L+ KS    +      LISMY KCG+ E A ++F ++  ++V
Sbjct: 455 LSGAACIGTIVKGEQIHALIVKSGFGTNLCINNALISMYSKCGNKEAALQVFNDMGYRNV 514

Query: 239 VTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDS 298
           +TW ++ISG+A+HG   KAL LF +M + G+KP+ +T++A+L AC+H GL+D   ++F+S
Sbjct: 515 ITWTSIISGFAKHGFATKALELFYEMLEIGVKPNEVTYIAVLSACSHVGLIDEAWKHFNS 574

Query: 299 MVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLD 358
           M  ++ I+ + +HY CMVDLLGR+G L+EA++ I  MPF     ++ T L +CRVH+   
Sbjct: 575 MHYNHSISPRMEHYACMVDLLGRSGLLLEAIEFINSMPFDADALVWRTFLGSCRVHRNTK 634

Query: 359 LAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEV 418
           L E AA  +    P + A  Y+ L+N+YA+  +WDDVA +R SMK+  ++K  GYSWIEV
Sbjct: 635 LGEHAAKKILEREPHDPAT-YILLSNLYASEGRWDDVAALRKSMKQKKLIKETGYSWIEV 693

Query: 419 GTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHS 478
              VH+F  GD  HP+   I+++L EL  ++K  GY+P+ +F LH V +E KEQ L  HS
Sbjct: 694 DNQVHKFHVGDTSHPQARKIYDELDELALKIKNLGYIPNTDFVLHDVEDEQKEQYLFQHS 753

Query: 479 EKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGT 538
           EK+A+A+ LI  P   PIRVFKNLRVCGDCH A KYIS +  REI+VRD  RFHH KDG 
Sbjct: 754 EKIAVAYALISTPKPKPIRVFKNLRVCGDCHTAIKYISIVTGREIVVRDANRFHHIKDGK 813

Query: 539 CSCGDYW 545
           CSC DYW
Sbjct: 814 CSCNDYW 820



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 60/189 (31%), Positives = 99/189 (52%), Gaps = 8/189 (4%)

Query: 106 AMISGYIECG-QLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI 164
           A+I  + + G  +  A  +F     K++V WT MI+ Y + G ++     D + L   ++
Sbjct: 186 ALIDMFTKGGLDIQSARMVFDKMQHKNLVTWTLMITRYSQLGLLD-----DAVDLFCRLL 240

Query: 165 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 224
                P+  +L+S+L  C  L    LGKQ+H  V +S L  D      L+ MY K   +E
Sbjct: 241 VSEYTPDKFTLTSLLSACVELEFFSLGKQLHSWVIRSGLASDVFVGCTLVDMYAKSAAVE 300

Query: 225 DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 284
           ++ K+F  +   +V++W A+ISGY Q  + ++A++LF  M    + P+  TF ++L AC 
Sbjct: 301 NSRKIFNTMLHHNVMSWTALISGYVQSRQEQEAIKLFCNMLHGHVTPNCFTFSSVLKAC- 359

Query: 285 HAGLVDLGI 293
            A L D GI
Sbjct: 360 -ASLPDFGI 367



 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 72/333 (21%), Positives = 147/333 (44%), Gaps = 21/333 (6%)

Query: 16  FAKQRGKLKDAQELFDKIPQPDVVSYNIMLS--CILLNSDDVVAAFDFFQRLPIK----D 69
           F K    ++ A+ +FDK+   ++V++ +M++    L   DD V   D F RL +     D
Sbjct: 191 FTKGGLDIQSARMVFDKMQHKNLVTWTLMITRYSQLGLLDDAV---DLFCRLLVSEYTPD 247

Query: 70  TASWNTMISGFVQKKNMAKARDLFLAMPEKNSVS----WSAMISGYIECGQLDKAVELFK 125
             +  +++S  V+ +  +  + L   +      S       ++  Y +   ++ + ++F 
Sbjct: 248 KFTLTSLLSACVELEFFSLGKQLHSWVIRSGLASDVFVGCTLVDMYAKSAAVENSRKIFN 307

Query: 126 VAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHL 185
                +V++WTA+ISGY     V++   ++ +KL   M+   + PN  + SSVL  C+ L
Sbjct: 308 TMLHHNVMSWTALISGY-----VQSRQEQEAIKLFCNMLHGHVTPNCFTFSSVLKACASL 362

Query: 186 SSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMI 245
               +GKQ+H    K  L         LI+MY + G +E A K F  +  K+++++N   
Sbjct: 363 PDFGIGKQLHGQTIKLGLSTINCVGNSLINMYARSGTMECARKAFNILFEKNLISYNTAA 422

Query: 246 SGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGI 305
              A+    +++     +++  G+     T+  LL      G +  G Q   +++   G 
Sbjct: 423 DANAKALDSDESFN--HEVEHTGVGASPFTYACLLSGAACIGTIVKGEQ-IHALIVKSGF 479

Query: 306 AAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 338
                    ++ +  + G    A+ +   M ++
Sbjct: 480 GTNLCINNALISMYSKCGNKEAALQVFNDMGYR 512



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 63/217 (29%), Positives = 97/217 (44%), Gaps = 41/217 (18%)

Query: 176 SSVLL-GCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI- 233
           SS+LL  C    +L+LGK +H  +  S L  D+  L  LI++Y KCGD E+A  +F  + 
Sbjct: 42  SSLLLKACIRSGNLELGKLLHHKLIDSGLPLDSVLLNSLITLYSKCGDWENALSIFRNMG 101

Query: 234 -QRKDVVTWNAMISGYAQHGKGEKALRLFDKM---KDEGMKPDSITFVALLLACNHAGLV 289
             ++D+V+W+A+IS +A +    +AL  F  M       + P+   F ALL +C++    
Sbjct: 102 HHKRDLVSWSAIISCFANNSMESRALLTFLHMLQCSRNIIYPNEYCFTALLRSCSNPLFF 161

Query: 290 DLGIQ---------YFDS-----------------------MVNDYGIAAKPDHYTCMVD 317
             G+          YFDS                       MV D         +T M+ 
Sbjct: 162 TTGLAIFAFLLKTGYFDSHVCVGCALIDMFTKGGLDIQSARMVFDKMQHKNLVTWTLMIT 221

Query: 318 LLGRAGKLVEAVDLIKKM---PFKPQPAIFGTLLSAC 351
              + G L +AVDL  ++    + P      +LLSAC
Sbjct: 222 RYSQLGLLDDAVDLFCRLLVSEYTPDKFTLTSLLSAC 258


>gi|75273443|sp|Q9LIQ7.1|PP252_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g24000, mitochondrial; Flags: Precursor
 gi|9294669|dbj|BAB03018.1| unnamed protein product [Arabidopsis thaliana]
          Length = 633

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 211/545 (38%), Positives = 321/545 (58%), Gaps = 19/545 (3%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
           N++L  +AK  G L++A+++F+K+PQ D V++  ++S      D    A  FF ++ ++ 
Sbjct: 99  NTLLNMYAKC-GSLEEARKVFEKMPQRDFVTWTTLISG-YSQHDRPCDALLFFNQM-LRF 155

Query: 70  TASWNTMISGFVQKKNMAKARDL---------FLAMPEKNSVSWSAMISGYIECGQLDKA 120
             S N      V K   A+ R                + N    SA++  Y   G +D A
Sbjct: 156 GYSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDA 215

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLL 180
             +F     ++ V+W A+I+G+ +      S  E  L+L + M+  G RP+  S +S+  
Sbjct: 216 QLVFDALESRNDVSWNALIAGHAR-----RSGTEKALELFQGMLRDGFRPSHFSYASLFG 270

Query: 181 GCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVT 240
            CS    L+ GK VH  + KS       A   L+ MY K G + DA K+F  + ++DVV+
Sbjct: 271 ACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVS 330

Query: 241 WNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV 300
           WN++++ YAQHG G++A+  F++M+  G++P+ I+F+++L AC+H+GL+D G  Y++ M 
Sbjct: 331 WNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACSHSGLLDEGWHYYELMK 390

Query: 301 NDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLA 360
            D GI  +  HY  +VDLLGRAG L  A+  I++MP +P  AI+  LL+ACR+HK  +L 
Sbjct: 391 KD-GIVPEAWHYVTVVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALLNACRMHKNTELG 449

Query: 361 EFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGT 420
            +AA ++F L+P +  G +V L NIYA+  +W+D AR+R  MKE+ V K P  SW+E+  
Sbjct: 450 AYAAEHVFELDPDDP-GPHVILYNIYASGGRWNDAARVRKKMKESGVKKEPACSWVEIEN 508

Query: 421 VVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEK 480
            +H F + D  HP+   I  K +E+  ++K  GYVPD    +  V ++ +E  L +HSEK
Sbjct: 509 AIHMFVANDERHPQREEIARKWEEVLAKIKELGYVPDTSHVIVHVDQQEREVNLQYHSEK 568

Query: 481 LAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCS 540
           +A+AF L+  P G+ I + KN+RVCGDCH A K  S +  REIIVRDT RFHHFKDG CS
Sbjct: 569 IALAFALLNTPPGSTIHIKKNIRVCGDCHTAIKLASKVVGREIIVRDTNRFHHFKDGNCS 628

Query: 541 CGDYW 545
           C DYW
Sbjct: 629 CKDYW 633



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 63/271 (23%), Positives = 115/271 (42%), Gaps = 43/271 (15%)

Query: 176 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR 235
           +++L  C+    L  G+ VH  + +S    D      L++MY KCG LE+A K+F ++ +
Sbjct: 64  NTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMPQ 123

Query: 236 KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA--------CNH-- 285
           +D VTW  +ISGY+QH +   AL  F++M   G  P+  T  +++ A        C H  
Sbjct: 124 RDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQL 183

Query: 286 ----------------AGLVDLGIQY---------FDSMVNDYGIAAKPDHYTCMVDLLG 320
                           + L+DL  +Y         FD++ +   ++     +  ++    
Sbjct: 184 HGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVS-----WNALIAGHA 238

Query: 321 RAGKLVEAVDLIKKM---PFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAG 377
           R     +A++L + M    F+P    + +L  AC     L+  ++    +        A 
Sbjct: 239 RRSGTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAF 298

Query: 378 CYVQLANIYAAMKKWDDVARIRLSMKENNVV 408
               L ++YA      D  +I   + + +VV
Sbjct: 299 AGNTLLDMYAKSGSIHDARKIFDRLAKRDVV 329



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 60/264 (22%), Positives = 106/264 (40%), Gaps = 47/264 (17%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQ----PDVVSYNIML----SCILLNS 52
           +  +  V+WN+++AG A++ G  K A ELF  + +    P   SY  +     S   L  
Sbjct: 222 LESRNDVSWNALIAGHARRSGTEK-ALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQ 280

Query: 53  DDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYI 112
              V A+       +   A  NT++  + +  ++  AR +F  + +++ VSW+++++ Y 
Sbjct: 281 GKWVHAYMIKSGEKLVAFAG-NTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYA 339

Query: 113 ECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNA 172
           + G                             FG     W E+       M  +GIRPN 
Sbjct: 340 QHG-----------------------------FGKEAVWWFEE-------MRRVGIRPNE 363

Query: 173 SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLE 232
            S  SVL  CSH   L  G   ++L+ K  +  +      ++ +  + GDL  A +   E
Sbjct: 364 ISFLSVLTACSHSGLLDEGWHYYELMKKDGIVPEAWHYVTVVDLLGRAGDLNRALRFIEE 423

Query: 233 IQ-RKDVVTWNAMISGYAQHGKGE 255
           +        W A+++    H   E
Sbjct: 424 MPIEPTAAIWKALLNACRMHKNTE 447


>gi|115473893|ref|NP_001060545.1| Os07g0662700 [Oryza sativa Japonica Group]
 gi|24414187|dbj|BAC22429.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|113612081|dbj|BAF22459.1| Os07g0662700 [Oryza sativa Japonica Group]
 gi|125559498|gb|EAZ05034.1| hypothetical protein OsI_27217 [Oryza sativa Indica Group]
 gi|125601406|gb|EAZ40982.1| hypothetical protein OsJ_25464 [Oryza sativa Japonica Group]
          Length = 544

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 208/516 (40%), Positives = 292/516 (56%), Gaps = 17/516 (3%)

Query: 35  QPDVVSYNIMLSCILLNS--DDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDL 92
           QP    +N ++     +   DD    FD       +DT S+N+MI       ++  AR L
Sbjct: 41  QPYARVHNALIQAYAASGLVDDARRVFDGMSH---RDTVSFNSMIHAHAMSGDVVSARRL 97

Query: 93  FLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSW 152
           F  +P    V+W++M++G    G +  A  LF+  PV+ +V+W AM+SG        N  
Sbjct: 98  FERVPSPTPVTWTSMVAGLCRAGDVAAARRLFEEMPVRDLVSWNAMMSGL-----AGNRR 152

Query: 153 AEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCK--DTTAL 210
             + L L R M+  G  PN  ++ S L  C+   +L+ GK +H  V +  L +  D    
Sbjct: 153 PVEALCLFRRMMAEGFAPNRGTVLSALAACAGAGALETGKWIHAFVERKRLFRWWDEFLG 212

Query: 211 TPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMK-DEGM 269
           T L+ MY KCG +E A  +F +++ ++  TWNAMI+G A +G   KAL +F KM+ D  +
Sbjct: 213 TALLDMYAKCGAVELALDVFTKLRSRNTCTWNAMINGLAMNGYSAKALDMFRKMELDRTV 272

Query: 270 KPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAV 329
            PD +TFV +LLAC+H G VD+G ++F  +   YGI    +HY CMVDLL R+G L EA 
Sbjct: 273 VPDEVTFVGVLLACSHGGFVDVGREHFHMIEKKYGIRLILEHYACMVDLLARSGHLQEAH 332

Query: 330 DLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAM 389
            +I  MP KP   ++  LL  CR+HK + +AE A   +     A  +G +V L+N+YAA+
Sbjct: 333 KIIAGMPMKPDAVVWRALLGGCRLHKDVKMAETAISEM----EATCSGDHVLLSNLYAAV 388

Query: 390 KKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRM 449
            +W  V  +R +M+   + K+PG S IE+   +HEF SGD+ HP    IH KL E+  RM
Sbjct: 389 GRWSGVEDVRRTMRSKGIEKIPGCSSIEINDSIHEFVSGDKSHPSYNDIHAKLAEISARM 448

Query: 450 KLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCH 509
           +  GYV +     + V EE KEQ L  HSEKLAIAFGLI  P    IR+ KNLR C DCH
Sbjct: 449 QQQGYVTETAEVFYDVEEEEKEQALGHHSEKLAIAFGLIGGPPNVAIRIVKNLRFCADCH 508

Query: 510 RATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           +  K +S I   EI+VRD  RFHHF +G CSC D+W
Sbjct: 509 KFAKLVSQIYHWEIVVRDRARFHHFTEGACSCNDFW 544


>gi|296085273|emb|CBI29005.3| unnamed protein product [Vitis vinifera]
          Length = 587

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 193/432 (44%), Positives = 268/432 (62%), Gaps = 7/432 (1%)

Query: 115 GQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASS 174
           G+ D A  LF   P + VV+W +M++ Y + G        + L L   M  +G++P  ++
Sbjct: 162 GKRDDAFGLFSEMPCRDVVSWNSMLACYAQCGK-----PNEALALFDQMRAVGVKPTEAT 216

Query: 175 LSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ 234
           + S+L  C+HL +L  G  +H  +  + +  ++   T L+ MY KCG +  A ++F  ++
Sbjct: 217 VVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAME 276

Query: 235 RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ 294
            KDV+ WN +I+G A HG  ++A RLF +MK+ G++P+ ITFVA+L AC+HAG+VD G +
Sbjct: 277 SKDVLAWNTIIAGMAIHGHVKEAQRLFKEMKEAGVEPNDITFVAMLSACSHAGMVDEGQK 336

Query: 295 YFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVH 354
             D M + YGI  K +HY C++DLL RAG L EA++LI  MP +P P   G LL  CR+H
Sbjct: 337 LLDCMSSSYGIEPKVEHYGCVIDLLARAGLLEEAMELIGTMPMEPNPCALGALLGGCRIH 396

Query: 355 KRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYS 414
              +L E     L NL P + +G Y+ L+NIYAA KKWDD  ++R  MK N + K+PG S
Sbjct: 397 GNFELGEMVGKRLINLQPCH-SGRYILLSNIYAAAKKWDDARKVRNLMKVNGISKVPGVS 455

Query: 415 WIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLA-GYVPDLEFALHAVGEEVKEQL 473
            IE+  +VH F +GD  HPE   I+EKL E+  R+K A G+  D    L  + EE KE  
Sbjct: 456 VIELKGMVHRFVAGDWSHPESNKIYEKLNEIHTRLKSAIGHSADTGDVLLDMEEEDKEHA 515

Query: 474 LLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHH 533
           L  HSEKLAIA+GL+ +     IR+ KNLRVC DCH  TK IS +  REIIVRD  RFHH
Sbjct: 516 LPVHSEKLAIAYGLLHLDSKEAIRIVKNLRVCRDCHHVTKLISKVYGREIIVRDRNRFHH 575

Query: 534 FKDGTCSCGDYW 545
           F+DG CSC D+W
Sbjct: 576 FEDGECSCLDFW 587



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 71/288 (24%), Positives = 124/288 (43%), Gaps = 45/288 (15%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILL--NSDDVVAAFDFFQRLPIKDT-ASWNTMI 77
           GK  DA  LF ++P  DVVS+N ML+C       ++ +A FD  + + +K T A+  +++
Sbjct: 162 GKRDDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLL 221

Query: 78  SGFVQKKNMAKARDLFLAMP----EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVV 133
           S       + K   L   +     E NS+  +A++  Y +CG++  A ++F     K V+
Sbjct: 222 SACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVL 281

Query: 134 AWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ 193
           AW  +I+G    G+V     ++  +L + M   G+ PN  +  ++L  CSH   +  G++
Sbjct: 282 AWNTIIAGMAIHGHV-----KEAQRLFKEMKEAGVEPNDITFVAMLSACSHAGMVDEGQK 336

Query: 194 VHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGK 253
           +   +  S        + P +  Y                          +I   A+ G 
Sbjct: 337 LLDCMSSS------YGIEPKVEHY------------------------GCVIDLLARAGL 366

Query: 254 GEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN 301
            E+A+ L   M    M+P+     ALL  C   G  +LG      ++N
Sbjct: 367 LEEAMELIGTMP---MEPNPCALGALLGGCRIHGNFELGEMVGKRLIN 411



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 61/273 (22%), Positives = 112/273 (41%), Gaps = 51/273 (18%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDK-----IPQPDVVSYNIMLSCILLNSDD- 54
           M  +  V+WNS+LA +A Q GK  +A  LFD+     +   +    +++ +C  L + D 
Sbjct: 174 MPCRDVVSWNSMLACYA-QCGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDK 232

Query: 55  --------------------------------VVAAFDFFQRLPIKDTASWNTMISGFVQ 82
                                           +  A   F  +  KD  +WNT+I+G   
Sbjct: 233 GLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAI 292

Query: 83  KKNMAKARDLFLAMPEK----NSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAM 138
             ++ +A+ LF  M E     N +++ AM+S     G +D+  +L     + S       
Sbjct: 293 HGHVKEAQRLFKEMKEAGVEPNDITFVAMLSACSHAGMVDEGQKLLDC--MSSSYGIEPK 350

Query: 139 ISGYMKFGYVENSWAEDGL--KLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQ 196
           +  Y   G V +  A  GL  + + ++  + + PN  +L ++L GC    + +LG+ V +
Sbjct: 351 VEHY---GCVIDLLARAGLLEEAMELIGTMPMEPNPCALGALLGGCRIHGNFELGEMVGK 407

Query: 197 LVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 229
            +     C     +  L ++Y      +DA K+
Sbjct: 408 RLINLQPCHSGRYIL-LSNIYAAAKKWDDARKV 439


>gi|22328607|ref|NP_193141.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635650|sp|O23266.3|PP308_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g14050, mitochondrial; Flags: Precursor
 gi|332657965|gb|AEE83365.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 612

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 197/479 (41%), Positives = 291/479 (60%), Gaps = 17/479 (3%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVV 133
           ++++  + +   +  A+ +F ++  KN++SW+AM+SGY + G+ ++A+ELF++ PVK++ 
Sbjct: 144 SSLVDMYAKCGLLNSAKAVFDSIRVKNTISWTAMVSGYAKSGRKEEALELFRILPVKNLY 203

Query: 134 AWTAMISGYMKFG------YVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSS 187
           +WTA+ISG+++ G       V      + + +L  ++          LSS++  C++L++
Sbjct: 204 SWTALISGFVQSGKGLEAFSVFTEMRRERVDILDPLV----------LSSIVGACANLAA 253

Query: 188 LQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISG 247
              G+QVH LV              LI MY KC D+  A  +F  ++ +DVV+W ++I G
Sbjct: 254 SIAGRQVHGLVIALGFDSCVFISNALIDMYAKCSDVIAAKDIFSRMRHRDVVSWTSLIVG 313

Query: 248 YAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAA 307
            AQHG+ EKAL L+D M   G+KP+ +TFV L+ AC+H G V+ G + F SM  DYGI  
Sbjct: 314 MAQHGQAEKALALYDDMVSHGVKPNEVTFVGLIYACSHVGFVEKGRELFQSMTKDYGIRP 373

Query: 308 KPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNL 367
              HYTC++DLLGR+G L EA +LI  MPF P    +  LLSAC+   R  +    A +L
Sbjct: 374 SLQHYTCLLDLLGRSGLLDEAENLIHTMPFPPDEPTWAALLSACKRQGRGQMGIRIADHL 433

Query: 368 FNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRS 427
            +         Y+ L+NIYA+   W  V+  R  + E  V K PG+S +EV      F +
Sbjct: 434 VSSFKLKDPSTYILLSNIYASASLWGKVSEARRKLGEMEVRKDPGHSSVEVRKETEVFYA 493

Query: 428 GDRVHPELVSIHEKLKELEKRMKLA-GYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFG 486
           G+  HP    I   LK+LE+ M++  GYVPD  + LH + E+ KE+LL +HSE+ A+A+G
Sbjct: 494 GETSHPLKEDIFRLLKKLEEEMRIRNGYVPDTSWILHDMDEQEKEKLLFWHSERSAVAYG 553

Query: 487 LIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           L+K   GTPIR+ KNLRVCGDCH   K+IS I +REIIVRD TR+HHFK G CSC D+W
Sbjct: 554 LLKAVPGTPIRIVKNLRVCGDCHVVLKHISEITEREIIVRDATRYHHFKGGKCSCNDFW 612



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 72/290 (24%), Positives = 141/290 (48%), Gaps = 18/290 (6%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           + VK T++W ++++G+AK  G+ ++A ELF  +P  ++ S+  ++S   + S   + AF 
Sbjct: 166 IRVKNTISWTAMVSGYAKS-GRKEEALELFRILPVKNLYSWTALISG-FVQSGKGLEAFS 223

Query: 61  FF-----QRLPIKDTASWNTMISGFVQKKNMAKARD---LFLAMPEKNSVSWS-AMISGY 111
            F     +R+ I D    ++++            R    L +A+   + V  S A+I  Y
Sbjct: 224 VFTEMRRERVDILDPLVLSSIVGACANLAASIAGRQVHGLVIALGFDSCVFISNALIDMY 283

Query: 112 IECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPN 171
            +C  +  A ++F     + VV+WT++I G  + G      AE  L L   M+  G++PN
Sbjct: 284 AKCSDVIAAKDIFSRMRHRDVVSWTSLIVGMAQHGQ-----AEKALALYDDMVSHGVKPN 338

Query: 172 ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDT-TALTPLISMYCKCGDLEDACKLF 230
             +   ++  CSH+  ++ G+++ Q + K    + +    T L+ +  + G L++A  L 
Sbjct: 339 EVTFVGLIYACSHVGFVEKGRELFQSMTKDYGIRPSLQHYTCLLDLLGRSGLLDEAENLI 398

Query: 231 LEIQ-RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVAL 279
             +    D  TW A++S   + G+G+  +R+ D +       D  T++ L
Sbjct: 399 HTMPFPPDEPTWAALLSACKRQGRGQMGIRIADHLVSSFKLKDPSTYILL 448



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 83/157 (52%), Gaps = 4/157 (2%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI 164
           + +++ Y +CG    A+++F   P +  +AW ++++   +     N   +       +  
Sbjct: 42  NTLVNVYGKCGAASHALQVFDEMPHRDHIAWASVLTALNQ----ANLSGKTLSVFSSVGS 97

Query: 165 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 224
             G+RP+    S+++  C++L S+  G+QVH     S    D    + L+ MY KCG L 
Sbjct: 98  SSGLRPDDFVFSALVKACANLGSIDHGRQVHCHFIVSEYANDEVVKSSLVDMYAKCGLLN 157

Query: 225 DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLF 261
            A  +F  I+ K+ ++W AM+SGYA+ G+ E+AL LF
Sbjct: 158 SAKAVFDSIRVKNTISWTAMVSGYAKSGRKEEALELF 194



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 69/149 (46%), Gaps = 4/149 (2%)

Query: 182 CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTW 241
           C+   +L   K +H  + K  + +       L+++Y KCG    A ++F E+  +D + W
Sbjct: 13  CARNRTLTTAKALHAHIVKLGIVQCCPLANTLVNVYGKCGAASHALQVFDEMPHRDHIAW 72

Query: 242 NAMISGYAQHGKGEKAL-RLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ-YFDSM 299
            ++++   Q     K L          G++PD   F AL+ AC + G +D G Q +   +
Sbjct: 73  ASVLTALNQANLSGKTLSVFSSVGSSSGLRPDDFVFSALVKACANLGSIDHGRQVHCHFI 132

Query: 300 VNDYGIAAKPDHYTCMVDLLGRAGKLVEA 328
           V++Y  A      + +VD+  + G L  A
Sbjct: 133 VSEY--ANDEVVKSSLVDMYAKCGLLNSA 159


>gi|224069701|ref|XP_002303023.1| predicted protein [Populus trichocarpa]
 gi|222844749|gb|EEE82296.1| predicted protein [Populus trichocarpa]
          Length = 621

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 195/457 (42%), Positives = 276/457 (60%), Gaps = 19/457 (4%)

Query: 89  ARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYV 148
           AR +F  MPE++ V+ + MI+ Y + G             +K  V WTAMI G      V
Sbjct: 184 ARRVFDEMPERDVVASTVMINYYFDHG-------------IKDTVCWTAMIDGL-----V 225

Query: 149 ENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTT 208
            N  +   L++ R M    + PN  ++  VL  CS L +LQLG+ V   + K  +  +  
Sbjct: 226 RNGESNRALEVFRNMQREDVMPNEVTIVCVLSACSELGALQLGRWVRSYMDKHRIELNHF 285

Query: 209 ALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEG 268
               LI+MY +CGD+++A ++F +++ K+V+T+N+MI G+A HGK  +A+ LF  +  +G
Sbjct: 286 VGGALINMYSRCGDIDEAQRVFEQMKEKNVITYNSMIMGFALHGKSVEAVELFRGLIKQG 345

Query: 269 MKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEA 328
             P S+TFV +L AC+H GL +LG + F SM  DYGI  + +HY CMVDLLGR G+L EA
Sbjct: 346 FTPSSVTFVGVLNACSHGGLAELGFEIFHSMAKDYGIEPQIEHYGCMVDLLGRLGRLEEA 405

Query: 329 VDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAA 388
              I+ M   P   + G LLSAC++H  L+LAE  A +L     A++ G Y+ L+N Y++
Sbjct: 406 YSFIRMMKVAPDHVMLGALLSACKIHGNLELAERVAKSLVACKNADS-GTYILLSNAYSS 464

Query: 389 MKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKR 448
             KW + A +R +M+E  + K PG S IEV   +HEF  GD  HP+   I++KL+EL + 
Sbjct: 465 SGKWKEAAEVRTNMREEGIEKEPGCSSIEVNNEIHEFLLGDLRHPQKEKIYKKLEELNQI 524

Query: 449 MKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDC 508
           ++L GY P  E  LH + +  KE  L  HSE+LAI +GLI     T +RV KNLRVC DC
Sbjct: 525 LRLEGYTPATEVVLHDIEKSEKEWALAIHSERLAICYGLISTKPLTTLRVVKNLRVCNDC 584

Query: 509 HRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           H   K IS I +R+I+VRD  RFHHF++G CSCGDYW
Sbjct: 585 HLTIKLISNITRRKIVVRDRNRFHHFENGVCSCGDYW 621



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 82/292 (28%), Positives = 128/292 (43%), Gaps = 59/292 (20%)

Query: 114 CGQLDK---AVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRP 170
           C  L+    A ++F      +V  +TA+I G      V + +  DG+ L   MI   + P
Sbjct: 74  CSNLNSIGYASKIFSHTQNPNVYLYTALIDGL-----VLSCYYTDGIHLYYQMINSSLVP 128

Query: 171 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 230
           ++ +++SVL  C    +L+ G++VH  V K  L  + +    LI +Y KCG  EDA ++F
Sbjct: 129 DSYAVTSVLKACGCHLALKEGREVHSQVLKLGLSSNRSIRIKLIELYGKCGAFEDARRVF 188

Query: 231 LEIQRKDVVT------------------WNAMISGYAQHGKGEKALRLFDKMKDEGMKPD 272
            E+  +DVV                   W AMI G  ++G+  +AL +F  M+ E + P+
Sbjct: 189 DEMPERDVVASTVMINYYFDHGIKDTVCWTAMIDGLVRNGESNRALEVFRNMQREDVMPN 248

Query: 273 SITFVALLLACNHAGLVDLG---IQYFD------------SMVNDYGIAAKPDH------ 311
            +T V +L AC+  G + LG     Y D            +++N Y      D       
Sbjct: 249 EVTIVCVLSACSELGALQLGRWVRSYMDKHRIELNHFVGGALINMYSRCGDIDEAQRVFE 308

Query: 312 ---------YTCMVDLLGRAGKLVEAVDLIK---KMPFKPQPAIFGTLLSAC 351
                    Y  M+      GK VEAV+L +   K  F P    F  +L+AC
Sbjct: 309 QMKEKNVITYNSMIMGFALHGKSVEAVELFRGLIKQGFTPSSVTFVGVLNAC 360



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 81/354 (22%), Positives = 136/354 (38%), Gaps = 93/354 (26%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G  +DA+ +FD++P+ DVV+  +M+              +++    IKDT  W  MI G 
Sbjct: 179 GAFEDARRVFDEMPERDVVASTVMI--------------NYYFDHGIKDTVCWTAMIDGL 224

Query: 81  VQKKNMAKARDLFLAMP---------------------------------------EKNS 101
           V+     +A ++F  M                                        E N 
Sbjct: 225 VRNGESNRALEVFRNMQREDVMPNEVTIVCVLSACSELGALQLGRWVRSYMDKHRIELNH 284

Query: 102 VSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLR 161
               A+I+ Y  CG +D+A  +F+    K+V+ + +MI G+   G      + + ++L R
Sbjct: 285 FVGGALINMYSRCGDIDEAQRVFEQMKEKNVITYNSMIMGFALHGK-----SVEAVELFR 339

Query: 162 MMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCG 221
            +I  G  P++ +   VL  CSH    +LG +    +F S + KD   + P I  Y    
Sbjct: 340 GLIKQGFTPSSVTFVGVLNACSHGGLAELGFE----IFHS-MAKD-YGIEPQIEHY---- 389

Query: 222 DLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLL 281
                                 M+    + G+ E+A      MK   + PD +   ALL 
Sbjct: 390 --------------------GCMVDLLGRLGRLEEAYSFIRMMK---VAPDHVMLGALLS 426

Query: 282 ACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335
           AC   G ++L  +   S+V      A    Y  + +    +GK  EA ++   M
Sbjct: 427 ACKIHGNLELAERVAKSLVACKN--ADSGTYILLSNAYSSSGKWKEAAEVRTNM 478



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 61/283 (21%), Positives = 126/283 (44%), Gaps = 20/283 (7%)

Query: 3   VKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDV------- 55
           +K TV W +++ G  +  G+   A E+F  + + DV+   + + C+L    ++       
Sbjct: 211 IKDTVCWTAMIDGLVRN-GESNRALEVFRNMQREDVMPNEVTIVCVLSACSELGALQLGR 269

Query: 56  -VAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIEC 114
            V ++    R+ +        +I+ + +  ++ +A+ +F  M EKN +++++MI G+   
Sbjct: 270 WVRSYMDKHRIELNHFVG-GALINMYSRCGDIDEAQRVFEQMKEKNVITYNSMIMGFALH 328

Query: 115 GQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI-GLGIRPNAS 173
           G+  +AVELF+    +     +    G +         AE G ++   M    GI P   
Sbjct: 329 GKSVEAVELFRGLIKQGFTPSSVTFVGVLN-ACSHGGLAELGFEIFHSMAKDYGIEPQIE 387

Query: 174 SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKC-GDLEDA---CKL 229
               ++     L  L+   + +  +    +  D   L  L+S  CK  G+LE A    K 
Sbjct: 388 HYGCMVDLLGRLGRLE---EAYSFIRMMKVAPDHVMLGALLSA-CKIHGNLELAERVAKS 443

Query: 230 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPD 272
            +  +  D  T+  + + Y+  GK ++A  +   M++EG++ +
Sbjct: 444 LVACKNADSGTYILLSNAYSSSGKWKEAAEVRTNMREEGIEKE 486



 Score = 42.0 bits (97), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 61/300 (20%), Positives = 115/300 (38%), Gaps = 61/300 (20%)

Query: 177 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK 236
           S+L  C H + +     ++  + ++   +D   +  L+ +      +  A K+F   Q  
Sbjct: 37  SLLQNCKHNNQI---PPIYAKIIRNHHHQDPFVVFELLRVCSNLNSIGYASKIFSHTQNP 93

Query: 237 DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN-----------H 285
           +V  + A+I G          + L+ +M +  + PDS    ++L AC            H
Sbjct: 94  NVYLYTALIDGLVLSCYYTDGIHLYYQMINSSLVPDSYAVTSVLKACGCHLALKEGREVH 153

Query: 286 AGLVDLGI------------------------QYFDSMVNDYGIAAKP------DH---- 311
           + ++ LG+                        + FD M     +A+        DH    
Sbjct: 154 SQVLKLGLSSNRSIRIKLIELYGKCGAFEDARRVFDEMPERDVVASTVMINYYFDHGIKD 213

Query: 312 ---YTCMVDLLGRAGKLVEAVDLIKKMPFK---PQPAIFGTLLSACRVHKRLDLAEF--A 363
              +T M+D L R G+   A+++ + M  +   P       +LSAC     L L  +  +
Sbjct: 214 TVCWTAMIDGLVRNGESNRALEVFRNMQREDVMPNEVTIVCVLSACSELGALQLGRWVRS 273

Query: 364 AMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVH 423
            M+   +   +  G    L N+Y+     D+  R+   MKE NV+    Y+ + +G  +H
Sbjct: 274 YMDKHRIELNHFVGG--ALINMYSRCGDIDEAQRVFEQMKEKNVIT---YNSMIMGFALH 328


>gi|359484317|ref|XP_003633097.1| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Vitis vinifera]
          Length = 1005

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 202/535 (37%), Positives = 304/535 (56%), Gaps = 19/535 (3%)

Query: 21   GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
            G ++D   +F+     D++S+N +LS    N         F Q L      +  T IS  
Sbjct: 480  GSVQDGCRVFEATTNRDLISWNALLSGFHDNETCDTGLRIFNQMLAEGFNPNMYTFISIL 539

Query: 81   VQKKNMAKARDLFL-----AMPEKNSVSW-----SAMISGYIECGQLDKAVELFKVAPVK 130
               ++ +   D+ L     A   KNS+       +A++  Y +   L+ A  +F     +
Sbjct: 540  ---RSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKR 596

Query: 131  SVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQL 190
             + AWT +++GY + G       E  +K    M   G++PN  +L+S L GCS +++L  
Sbjct: 597  DLFAWTVIVAGYAQDGQ-----GEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDS 651

Query: 191  GKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQ 250
            G+Q+H +  K+    D    + L+ MY KCG +EDA  +F  +  +D V+WN +I GY+Q
Sbjct: 652  GRQLHSMAIKAGQSGDMFVASALVDMYAKCGCVEDAEVVFDGLVSRDTVSWNTIICGYSQ 711

Query: 251  HGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPD 310
            HG+G KAL+ F+ M DEG  PD +TF+ +L AC+H GL++ G ++F+S+   YGI    +
Sbjct: 712  HGQGGKALKAFEAMLDEGTVPDEVTFIGVLSACSHMGLIEEGKKHFNSLSKIYGITPTIE 771

Query: 311  HYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNL 370
            HY CMVD+LGRAGK  E    I++M       I+ T+L AC++H  ++  E AAM LF L
Sbjct: 772  HYACMVDILGRAGKFHEVESFIEEMKLTSNVLIWETVLGACKMHGNIEFGERAAMKLFEL 831

Query: 371  NPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDR 430
             P   +  Y+ L+N++AA   WDDV  +R  M    V K PG SW+EV   VH F S D 
Sbjct: 832  EPEIDSN-YILLSNMFAAKGMWDDVTNVRALMSTRGVKKEPGCSWVEVNGQVHVFLSHDG 890

Query: 431  VHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKV 490
             HP++  IH KL++L +++   GY P+ +  LH V +  K++LL +HSE+LA+AF L+  
Sbjct: 891  SHPKIREIHLKLQDLHQKLMSVGYTPNTDHVLHNVSDREKQELLFYHSERLALAFALLST 950

Query: 491  PLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
                 IR+FKNLR+CGDCH   K IS I  +E++VRD   FHHFK+G+CSC ++W
Sbjct: 951  STRKTIRIFKNLRICGDCHDFMKSISEITNQELVVRDINCFHHFKNGSCSCQNFW 1005



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 100/405 (24%), Positives = 174/405 (42%), Gaps = 84/405 (20%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCIL---LNSDDVVA 57
           M  +  V+WN++L GFA Q G  +    LF ++   ++      LS +L    NS ++ A
Sbjct: 290 MPKQNAVSWNALLNGFA-QMGDAEKVLNLFCRMTGSEINFSKFTLSTVLKGCANSGNLRA 348

Query: 58  -----------------------------------AFDFFQRLPIKDTASWNTMISGFVQ 82
                                              A   F R+   D  SW+ +I+   Q
Sbjct: 349 GQIVHSLAIRIGCELDEFISCCLVDMYSKCGLAGDALKVFVRIEDPDVVSWSAIITCLDQ 408

Query: 83  KKNMAKARDLFLAMP---------------------------------------EKNSVS 103
           K    +A ++F  M                                        E ++  
Sbjct: 409 KGQSREAAEVFKRMRHSGVIPNQFTLASLVSAATDLGDLYYGESIHACVCKYGFEYDNTV 468

Query: 104 WSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMM 163
            +A+++ Y++ G +     +F+    + +++W A++SG+      +N   + GL++   M
Sbjct: 469 CNALVTMYMKIGSVQDGCRVFEATTNRDLISWNALLSGFH-----DNETCDTGLRIFNQM 523

Query: 164 IGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDL 223
           +  G  PN  +  S+L  CS LS + LGKQVH  + K+ L  +    T L+ MY K   L
Sbjct: 524 LAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFL 583

Query: 224 EDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC 283
           EDA  +F  + ++D+  W  +++GYAQ G+GEKA++ F +M+ EG+KP+  T  + L  C
Sbjct: 584 EDAETIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGC 643

Query: 284 NHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEA 328
           +    +D G Q   SM    G +      + +VD+  + G + +A
Sbjct: 644 SRIATLDSGRQ-LHSMAIKAGQSGDMFVASALVDMYAKCGCVEDA 687



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 77/304 (25%), Positives = 139/304 (45%), Gaps = 50/304 (16%)

Query: 54  DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMIS 109
           ++V A   F  +P ++  SWN +++GF Q  +  K  +LF  M       +  + S ++ 
Sbjct: 279 EMVLAERVFLCMPKQNAVSWNALLNGFAQMGDAEKVLNLFCRMTGSEINFSKFTLSTVLK 338

Query: 110 G-----------------------------------YIECGQLDKAVELFKVAPVKSVVA 134
           G                                   Y +CG    A+++F       VV+
Sbjct: 339 GCANSGNLRAGQIVHSLAIRIGCELDEFISCCLVDMYSKCGLAGDALKVFVRIEDPDVVS 398

Query: 135 WTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQV 194
           W+A+I+   + G      + +  ++ + M   G+ PN  +L+S++   + L  L  G+ +
Sbjct: 399 WSAIITCLDQKGQ-----SREAAEVFKRMRHSGVIPNQFTLASLVSAATDLGDLYYGESI 453

Query: 195 HQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKG 254
           H  V K     D T    L++MY K G ++D C++F     +D+++WNA++SG+  +   
Sbjct: 454 HACVCKYGFEYDNTVCNALVTMYMKIGSVQDGCRVFEATTNRDLISWNALLSGFHDNETC 513

Query: 255 EKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV------NDYGIAAK 308
           +  LR+F++M  EG  P+  TF+++L +C+    VDLG Q    +V      ND+   A 
Sbjct: 514 DTGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTAL 573

Query: 309 PDHY 312
            D Y
Sbjct: 574 VDMY 577



 Score =  115 bits (287), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 79/290 (27%), Positives = 133/290 (45%), Gaps = 55/290 (18%)

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSW------------- 104
           F  +P +D  SW  +I+GFV +   + A +LF  M     E N  ++             
Sbjct: 186 FGEIPERDVVSWTALITGFVAEGYGSGAVNLFCEMRREGVEANEFTYATALKACSMCLDL 245

Query: 105 ----------------------SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGY 142
                                 SA++  Y +CG++  A  +F   P ++ V+W A+++G+
Sbjct: 246 EFGKQVHAEAIKVGDFSDLFVGSALVDLYAKCGEMVLAERVFLCMPKQNAVSWNALLNGF 305

Query: 143 MKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSP 202
            + G      AE  L L   M G  I  +  +LS+VL GC++  +L+ G+ VH L  +  
Sbjct: 306 AQMGD-----AEKVLNLFCRMTGSEINFSKFTLSTVLKGCANSGNLRAGQIVHSLAIRIG 360

Query: 203 LCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFD 262
              D      L+ MY KCG   DA K+F+ I+  DVV+W+A+I+   Q G+  +A  +F 
Sbjct: 361 CELDEFISCCLVDMYSKCGLAGDALKVFVRIEDPDVVSWSAIITCLDQKGQSREAAEVFK 420

Query: 263 KMKDEGMKPDSITFVALLLACN-----------HAGLVDLGIQYFDSMVN 301
           +M+  G+ P+  T  +L+ A             HA +   G +Y +++ N
Sbjct: 421 RMRHSGVIPNQFTLASLVSAATDLGDLYYGESIHACVCKYGFEYDNTVCN 470



 Score =  115 bits (287), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 66/232 (28%), Positives = 118/232 (50%), Gaps = 6/232 (2%)

Query: 104 WSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMM 163
           W+++++ Y +CG  + A ++F   P + VV+WTA+I+G++  GY         + L   M
Sbjct: 166 WNSLVNVYAKCGSANYACKVFGEIPERDVVSWTALITGFVAEGY-----GSGAVNLFCEM 220

Query: 164 IGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDL 223
              G+  N  + ++ L  CS    L+ GKQVH    K     D    + L+ +Y KCG++
Sbjct: 221 RREGVEANEFTYATALKACSMCLDLEFGKQVHAEAIKVGDFSDLFVGSALVDLYAKCGEM 280

Query: 224 EDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC 283
             A ++FL + +++ V+WNA+++G+AQ G  EK L LF +M    +     T   +L  C
Sbjct: 281 VLAERVFLCMPKQNAVSWNALLNGFAQMGDAEKVLNLFCRMTGSEINFSKFTLSTVLKGC 340

Query: 284 NHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335
            ++G +  G Q   S+    G         C+VD+  + G   +A+ +  ++
Sbjct: 341 ANSGNLRAG-QIVHSLAIRIGCELDEFISCCLVDMYSKCGLAGDALKVFVRI 391



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 85/163 (52%), Gaps = 5/163 (3%)

Query: 176 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR 235
           S +L  C+    L  GK +H  V KS +  D+     L+++Y KCG    ACK+F EI  
Sbjct: 132 SGMLRTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIPE 191

Query: 236 KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQY 295
           +DVV+W A+I+G+   G G  A+ LF +M+ EG++ +  T+   L AC+    ++ G Q 
Sbjct: 192 RDVVSWTALITGFVAEGYGSGAVNLFCEMRREGVEANEFTYATALKACSMCLDLEFGKQV 251

Query: 296 FDSMVNDYGIAAKPDHY--TCMVDLLGRAGKLVEAVDLIKKMP 336
               +    +    D +  + +VDL  + G++V A  +   MP
Sbjct: 252 HAEAIK---VGDFSDLFVGSALVDLYAKCGEMVLAERVFLCMP 291


>gi|357449183|ref|XP_003594868.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355483916|gb|AES65119.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 874

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 214/558 (38%), Positives = 310/558 (55%), Gaps = 51/558 (9%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQ 63
           +T   WN+++AG+ +     +  +   + + +  +   ++ LS +L      V    F  
Sbjct: 352 RTIAVWNAMIAGYVRNEFDYEAIELFVEMVFELGLSPNSVTLSSVL---PACVRCESFLD 408

Query: 64  RLPI----------KDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE 113
           +  I          KD    N ++  + +   +  AR +F +M  K+ VSW+ MI+GY+ 
Sbjct: 409 KEGIHSCVVKWGFEKDKYVQNALMDMYSRMGRIEIARSIFGSMNRKDIVSWNTMITGYVV 468

Query: 114 CGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNAS 173
           CG+ D A+ L              M  G  +         ED            ++PN+ 
Sbjct: 469 CGRHDDALNLLH-----------DMQRGQAEHRINTFDDYEDNKN-------FPLKPNSV 510

Query: 174 SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI 233
           +L +VL GC+ L++L  GK++H    K  L KD    + L+ MY KCG L  +  +F ++
Sbjct: 511 TLMTVLPGCAALAALGKGKEIHAYAVKQMLSKDVAVGSALVDMYAKCGCLNLSRTVFEQM 570

Query: 234 QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEG-----MKPDSITFVALLLACNHAGL 288
             ++V+TWN +I  Y  HGKGE+AL+LF +M +EG     ++P+ +T++A+  + +H+G+
Sbjct: 571 SVRNVITWNVLIMAYGMHGKGEEALKLFRRMVEEGDNNREIRPNEVTYIAIFASLSHSGM 630

Query: 289 VDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPA-IFGTL 347
           VD G+  F +M   +GI    DHY C+VDLLGR+G++ EA +LIK MP   +    + +L
Sbjct: 631 VDEGLNLFYTMKAKHGIEPTSDHYACLVDLLGRSGQIEEAYNLIKTMPSNMKKVDAWSSL 690

Query: 348 LSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNV 407
           L AC++H+ L++ E AA NLF L+P           N+     K   + R    MKE  V
Sbjct: 691 LGACKIHQNLEIGEIAAKNLFVLDP-----------NVLDYGTKQSMLGR---KMKEKGV 736

Query: 408 VKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGE 467
            K PG SWIE G  VH+F +GD  HP+   +HE L+ L  RMK  GYVPD    LH VGE
Sbjct: 737 RKEPGCSWIEHGDEVHKFLAGDVSHPQSKEVHEYLETLSLRMKKEGYVPDTSCVLHNVGE 796

Query: 468 EVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRD 527
           E KE +L  HSE+LAIAFGL+    GT IRV KNLRVC DCH ATK+IS I  REII+RD
Sbjct: 797 EEKETMLCGHSERLAIAFGLLNTSPGTTIRVAKNLRVCNDCHVATKFISKIVDREIILRD 856

Query: 528 TTRFHHFKDGTCSCGDYW 545
             RFHHF++GTCSCGDYW
Sbjct: 857 VRRFHHFRNGTCSCGDYW 874



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 93/341 (27%), Positives = 163/341 (47%), Gaps = 22/341 (6%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIML--SCILLNSDDVVAAFDFFQRLPI 67
           NS++  + K  G +  A+ +FD+I   D VS+N M+  +C     +  V  F       +
Sbjct: 124 NSLVNMYGKC-GDIDAARRVFDEITNRDDVSWNSMINAACRFEEWELAVHLFRLMLLENV 182

Query: 68  KDTA--------SWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDK 119
             T+        + + +I+G +  K   +     L   +  + + +A+++ Y + G++ +
Sbjct: 183 GPTSFTLVSVAHACSNLINGLLLGK---QVHAFVLRNGDWRTFTNNALVTMYAKLGRVYE 239

Query: 120 AVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVL 179
           A  LF V   K +V+W  +IS        +N   E+ L  L +M+  G+RPN  +L+SVL
Sbjct: 240 AKTLFDVFDDKDLVSWNTIIS-----SLSQNDRFEEALLYLHVMLQSGVRPNGVTLASVL 294

Query: 180 LGCSHLSSLQLGKQVHQLVF-KSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDV 238
             CSHL  L  GK++H  V   + L +++     L+ MYC C   E    +F  + R+ +
Sbjct: 295 PACSHLEMLGCGKEIHAFVLMNNDLIENSFVGCALVDMYCNCKQPEKGRLVFDGMFRRTI 354

Query: 239 VTWNAMISGYAQHGKGEKALRLFDKMKDE-GMKPDSITFVALLLACNHAGLVDLGIQYFD 297
             WNAMI+GY ++    +A+ LF +M  E G+ P+S+T  ++L AC       L  +   
Sbjct: 355 AVWNAMIAGYVRNEFDYEAIELFVEMVFELGLSPNSVTLSSVLPACVRCESF-LDKEGIH 413

Query: 298 SMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 338
           S V  +G          ++D+  R G++  A  +   M  K
Sbjct: 414 SCVVKWGFEKDKYVQNALMDMYSRMGRIEIARSIFGSMNRK 454



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 87/311 (27%), Positives = 140/311 (45%), Gaps = 36/311 (11%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRL---- 65
           N+ L     + G++ +A+ LFD     D+VS+N ++S +  N D    A  +   +    
Sbjct: 224 NNALVTMYAKLGRVYEAKTLFDVFDDKDLVSWNTIISSLSQN-DRFEEALLYLHVMLQSG 282

Query: 66  --PIKDTASWNTMISGFVQKKNMAKARDLFLAMPE---KNSVSWSAMISGYIECGQLDKA 120
             P   T +        ++     K    F+ M     +NS    A++  Y  C Q +K 
Sbjct: 283 VRPNGVTLASVLPACSHLEMLGCGKEIHAFVLMNNDLIENSFVGCALVDMYCNCKQPEKG 342

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKL-LRMMIGLGIRPNASSLSSVL 179
             +F     +++  W AMI+GY     V N +  + ++L + M+  LG+ PN+ +LSSVL
Sbjct: 343 RLVFDGMFRRTIAVWNAMIAGY-----VRNEFDYEAIELFVEMVFELGLSPNSVTLSSVL 397

Query: 180 LGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVV 239
             C    S    + +H  V K    KD      L+ MY + G +E A  +F  + RKD+V
Sbjct: 398 PACVRCESFLDKEGIHSCVVKWGFEKDKYVQNALMDMYSRMGRIEIARSIFGSMNRKDIV 457

Query: 240 TWNAMISGYA---------------QHGKGEKALRLFDKMKDEG---MKPDSITFVALLL 281
           +WN MI+GY                Q G+ E  +  FD  +D     +KP+S+T + +L 
Sbjct: 458 SWNTMITGYVVCGRHDDALNLLHDMQRGQAEHRINTFDDYEDNKNFPLKPNSVTLMTVLP 517

Query: 282 ACNHAGLVDLG 292
            C  A L  LG
Sbjct: 518 GC--AALAALG 526



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 44/123 (35%), Positives = 70/123 (56%)

Query: 163 MIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGD 222
           M+  G+ P+  +  +VL   + +  L LGKQ+H  VFK      T     L++MY KCGD
Sbjct: 76  MVTAGVPPDNFAFPAVLKATAGIQDLNLGKQLHAHVFKFGQALPTAVPNSLVNMYGKCGD 135

Query: 223 LEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA 282
           ++ A ++F EI  +D V+WN+MI+   +  + E A+ LF  M  E + P S T V++  A
Sbjct: 136 IDAARRVFDEITNRDDVSWNSMINAACRFEEWELAVHLFRLMLLENVGPTSFTLVSVAHA 195

Query: 283 CNH 285
           C++
Sbjct: 196 CSN 198


>gi|297820538|ref|XP_002878152.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323990|gb|EFH54411.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 886

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 209/547 (38%), Positives = 300/547 (54%), Gaps = 58/547 (10%)

Query: 51  NSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK-----NSVSWS 105
           N   V++    F  +  +    WN MI+G+ Q +   +A  LF+ M E      NS + +
Sbjct: 346 NCKQVLSGCRVFDGMFDRKIGLWNAMITGYAQNEYDEEALLLFIEMEESAGLLANSTTMA 405

Query: 106 -----------------------------------AMISGYIECGQLDKAVELFKVAPVK 130
                                              A++  Y   G++D A  +F     +
Sbjct: 406 GVVPACVRSGAFSKKEAIHGFVVKRGLDRDRFVQNALMDMYSRLGKIDIAKRIFGKMEDR 465

Query: 131 SVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGL-----------GIRPNASSLSSVL 179
            +V W  +I+GY     V +   ED L +L  M  L            ++PN+ +L ++L
Sbjct: 466 DLVTWNTIITGY-----VFSERHEDALLMLHKMQILERKASERASRVSLKPNSITLMTIL 520

Query: 180 LGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVV 239
             C+ LS+L  GK++H    K+ L  D    + L+ MY KCG L+ + K+F +I  ++V+
Sbjct: 521 PSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPIRNVI 580

Query: 240 TWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSM 299
           TWN ++  Y  HG  + A+ +   M  +G+KP+ +TF+++  AC+H+G+V+ G++ F +M
Sbjct: 581 TWNVIVMAYGMHGNSQDAIDMLRMMMVQGVKPNEVTFISVFAACSHSGMVNEGLKIFYNM 640

Query: 300 VNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK-PQPAIFGTLLSACRVHKRLD 358
             DYG+    DHY C+VDLLGRAG++ EA  LI  +P    +   + +LL ACR+H  L+
Sbjct: 641 KKDYGVEPSSDHYACVVDLLGRAGRVKEAYQLINLIPRNFDKAGAWSSLLGACRIHNNLE 700

Query: 359 LAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEV 418
           + E AA NL  L P N A  YV LANIY++   W     +R +MK   V K PG SWIE 
Sbjct: 701 IGEIAAQNLIQLEP-NVASHYVLLANIYSSAGLWYKATEVRRNMKAQGVRKEPGCSWIEH 759

Query: 419 GTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHS 478
           G  VH+F +GD  HP+   +   L+ L +RM+  GY+PD    LH V E+ KE LL  HS
Sbjct: 760 GDEVHKFVAGDSSHPQSEKLRGYLETLWERMRKEGYIPDTSCVLHNVEEDEKEILLCGHS 819

Query: 479 EKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGT 538
           EKLAIAFG++    GT IRV KNLRVC DCH ATK+IS +  REII+RD  RFHHFK+GT
Sbjct: 820 EKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLATKFISKVVDREIILRDVRRFHHFKNGT 879

Query: 539 CSCGDYW 545
           CSCGDYW
Sbjct: 880 CSCGDYW 886



 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 87/342 (25%), Positives = 161/342 (47%), Gaps = 19/342 (5%)

Query: 6   TVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRL 65
           +V   + L    ++ G      ++FD+I + + VS+N ++S  L + +    A + F+ +
Sbjct: 128 SVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISS-LCSFEKWEMALEAFRCM 186

Query: 66  PIKDT-ASWNTMISGFVQKKNMAKARDLFLAMP---------EKNSVSWSAMISGYIECG 115
             +D   S  T++S  +   N      L +            E NS   + +++ Y + G
Sbjct: 187 LDEDVEPSSFTLVSVALACSNFPMPEGLLMGKQVHAYGLRKGELNSFIINTLVAMYGKMG 246

Query: 116 QLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSL 175
           +L  +  L      + +V W  ++S        +N    + L+ LR M+  G+ P+  ++
Sbjct: 247 KLASSKVLLGSFEGRDLVTWNTVLSSL-----CQNEQFLEALEYLREMVLEGVEPDGFTI 301

Query: 176 SSVLLGCSHLSSLQLGKQVHQLVFKS-PLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ 234
           SSVL  CSHL  L+ GK++H    K+  L +++   + L+ MYC C  +   C++F  + 
Sbjct: 302 SSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGCRVFDGMF 361

Query: 235 RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE-GMKPDSITFVALLLACNHAGLVDLGI 293
            + +  WNAMI+GYAQ+   E+AL LF +M++  G+  +S T   ++ AC  +G      
Sbjct: 362 DRKIGLWNAMITGYAQNEYDEEALLLFIEMEESAGLLANSTTMAGVVPACVRSGAFSKK- 420

Query: 294 QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335
           +     V   G+         ++D+  R GK+  A  +  KM
Sbjct: 421 EAIHGFVVKRGLDRDRFVQNALMDMYSRLGKIDIAKRIFGKM 462



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 64/208 (30%), Positives = 104/208 (50%), Gaps = 14/208 (6%)

Query: 163 MIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDT-TALTPLISMYCKCG 221
           MI LGI+P+  +  ++L   + L  + LGKQ+H  V+K     D+ T    L+++Y KCG
Sbjct: 84  MIVLGIKPDNFAFPALLKAVADLQDMDLGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCG 143

Query: 222 DLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLL 281
           D     K+F  I  ++ V+WN++IS      K E AL  F  M DE ++P S T V++ L
Sbjct: 144 DFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDEDVEPSSFTLVSVAL 203

Query: 282 ACNH----AGLVDLGIQYFDSMVNDYGIAAKPDH---YTCMVDLLGRAGKLVEAVDLIKK 334
           AC++     GL+ +G Q     V+ YG+     +      +V + G+ GKL  +  L+  
Sbjct: 204 ACSNFPMPEGLL-MGKQ-----VHAYGLRKGELNSFIINTLVAMYGKMGKLASSKVLLGS 257

Query: 335 MPFKPQPAIFGTLLSACRVHKRLDLAEF 362
              +        L S C+  + L+  E+
Sbjct: 258 FEGRDLVTWNTVLSSLCQNEQFLEALEY 285


>gi|224055823|ref|XP_002298671.1| predicted protein [Populus trichocarpa]
 gi|222845929|gb|EEE83476.1| predicted protein [Populus trichocarpa]
          Length = 609

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 220/576 (38%), Positives = 320/576 (55%), Gaps = 47/576 (8%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVS--------------------YNIMLSCIL 49
           N++L  + K    L+DA  LFD++PQ D VS                    ++ M +   
Sbjct: 41  NTLLDAYGKC-NLLQDAHYLFDEMPQRDHVSWASILTAYNQAKLPNKTLSIFHYMFTTDR 99

Query: 50  LNSDDVVAAF-------------------DFFQRLPIKDTASWNTMISGFVQKKNMAKAR 90
           L  D  V A                     F     + D    ++++  + +    + AR
Sbjct: 100 LQPDHFVYATLLKACASLCSLRLGKQVHARFVLSPFVDDDVVKSSLVDMYAKCGLPSIAR 159

Query: 91  DLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVEN 150
            +F ++  K SVSW+AM+SGY   G  D+A+ELF   PV+++ +WTA+ISG ++ GY   
Sbjct: 160 SVFDSILVKTSVSWTAMLSGYARSGLKDEAMELFLRTPVRNLYSWTALISGLVQSGY--- 216

Query: 151 SWAEDGLKLLRMMIGLGIR-PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTA 209
               DG  +   M   G+   +   LSSV+  C++L+ L LGKQ+H LV  S        
Sbjct: 217 --CIDGCYMFIEMRREGVDIVDPLVLSSVVGACANLAVLGLGKQIHGLVIGSGYESCLFI 274

Query: 210 LTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGM 269
              L+ MY KC D+  A  +F  +  +DVV+W ++I G AQHG+ ++AL L+D+M    +
Sbjct: 275 SNALVDMYAKCSDILAARNVFNRMLHRDVVSWTSIIVGAAQHGRAKEALDLYDQMVLAEI 334

Query: 270 KPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAV 329
           KP+ +TFV L+ AC+HAGLV  G + F +M+ DY I+     +TC +DLL R+G L EA 
Sbjct: 335 KPNEVTFVGLIYACSHAGLVSKGRKLFKAMIEDYRISPSLQLFTCFLDLLSRSGHLNEAE 394

Query: 330 DLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAM 389
           DLIK MP KP    +  LLSAC+ H   ++    A  L +LN  +    YV L+N+YA  
Sbjct: 395 DLIKTMPHKPDEPTWAALLSACKHHGNTEMGVRIADRLLSLN-MHEPSTYVLLSNVYAGA 453

Query: 390 KKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRM 449
            KW+ ++R+R  M +  V + PGYS I++G     F +G+  HP    I   LKEL+  M
Sbjct: 454 GKWEQMSRVRKLMTDMEVKRKPGYSSIDLGKESQVFHAGETCHPMKDEIFGLLKELDAEM 513

Query: 450 KLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCH 509
           +  GY+PD  + LH + E+ KE+ L +HSE+ A+A+GL+K   GT IR+ KNLR+CGDCH
Sbjct: 514 RKRGYIPDTSYVLHDMEEQEKERELFWHSERWAVAYGLLKAVPGTVIRIVKNLRICGDCH 573

Query: 510 RATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
              K  S+I  +EIIVRD TR+HHFKDG CSC D+W
Sbjct: 574 TFLKLTSSIVHKEIIVRDATRYHHFKDGRCSCNDFW 609



 Score = 55.1 bits (131), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 60/123 (48%), Gaps = 2/123 (1%)

Query: 173 SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLE 232
           S L  + L   H + L   K++H  + KS L +       L+  Y KC  L+DA  LF E
Sbjct: 4   SYLHRLKLCTKHQAPLN-AKKIHAQIVKSGLNQCQPLPNTLLDAYGKCNLLQDAHYLFDE 62

Query: 233 IQRKDVVTWNAMISGYAQHGKGEKALRLFDKM-KDEGMKPDSITFVALLLACNHAGLVDL 291
           + ++D V+W ++++ Y Q     K L +F  M   + ++PD   +  LL AC     + L
Sbjct: 63  MPQRDHVSWASILTAYNQAKLPNKTLSIFHYMFTTDRLQPDHFVYATLLKACASLCSLRL 122

Query: 292 GIQ 294
           G Q
Sbjct: 123 GKQ 125


>gi|413937268|gb|AFW71819.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 830

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 212/544 (38%), Positives = 309/544 (56%), Gaps = 38/544 (6%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQ 63
           +  V+W +++ G   Q G +  A  LF ++ +  V   ++  S IL  S+          
Sbjct: 323 QNVVSWTAMIDG-CIQNGDIPLAAALFSRMREDGVAPNDLTYSTILTVSE---------- 371

Query: 64  RLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVEL 123
                  AS+   I   V K N            E      +A++  Y +    ++A+ +
Sbjct: 372 -------ASFPPQIHAQVIKTNY-----------ECTPTVGTALMVSYSKLCSTEEALSI 413

Query: 124 FKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGC- 182
           FK+   K VV+W+AM++ Y + G  + + A +    + M    G++PN  ++SS +  C 
Sbjct: 414 FKMIDQKDVVSWSAMLTCYAQAG--DCNGATNAFIKMTMH---GLKPNEFTISSAIDACA 468

Query: 183 SHLSSLQLGKQVHQLVFKSPLCKDTTALTP-LISMYCKCGDLEDACKLFLEIQRKDVVTW 241
           S  + + LG+Q H +  K   C D   ++  L+SMY + G +E+A  +F     +D+++W
Sbjct: 469 SPAAGVDLGRQFHAISIKHR-CHDALCVSSALVSMYARKGSIENAQCVFERQTDRDLLSW 527

Query: 242 NAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN 301
           N+M+SGYAQHG  +KAL +F +M+ EG+  D +TF+++++ C HAGLV+ G QYFD MV 
Sbjct: 528 NSMLSGYAQHGYSQKALDVFRQMEVEGIDMDGLTFLSVIMGCAHAGLVEEGQQYFDLMVR 587

Query: 302 DYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAE 361
           DYGI    DHY CMVDL  RAGKL E + LI+ MPF   P I+  LL ACRVHK ++L +
Sbjct: 588 DYGITPTMDHYACMVDLYSRAGKLDETMSLIEGMPFPAGPTIWRALLGACRVHKNVELGK 647

Query: 362 FAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTV 421
            AA  L +L P ++A  YV L+NIY+A  KW +   +R  M    V K  G SWI++   
Sbjct: 648 LAAEKLLSLEPLDSA-TYVLLSNIYSAAGKWKEKDEVRKLMDTKKVRKEAGCSWIQIKNK 706

Query: 422 VHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKL 481
           VH F + D+ HP    I+ KL+ +  ++K  GY PD  F  H V E+ KE +L  HSE+L
Sbjct: 707 VHFFIASDKSHPLSEQIYAKLRAMTAKLKQEGYCPDTSFVPHDVAEDQKEAMLAMHSERL 766

Query: 482 AIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSC 541
           A+AFGLI  P   P+ +FKNLRV GD H   K +S IE REI++RD  RFHHFK G CSC
Sbjct: 767 ALAFGLIATPPAAPLHIFKNLRVSGDGHTVMKMVSEIEDREIVMRDCCRFHHFKSGVCSC 826

Query: 542 GDYW 545
           GD+W
Sbjct: 827 GDFW 830



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 90/295 (30%), Positives = 159/295 (53%), Gaps = 19/295 (6%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAA---FDFFQRLP 66
           NS++  +AK  G +++A+ +F ++   D+VS+N +++ ++LN  D+ A     D    + 
Sbjct: 196 NSLMNMYAKC-GLVEEARVVFCRMETRDMVSWNTLMAGLVLNGRDLEALQLFHDSRSSIT 254

Query: 67  IKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSW----SAMISGYIECGQLDKAVE 122
           +   ++++T+I+     K++  AR L  ++ +    S+    +A++  Y + GQLDKA++
Sbjct: 255 MLTESTYSTVINLCANLKHLGLARQLHSSVLKHGFHSYGNVMTALMDAYNKAGQLDKALD 314

Query: 123 LFKV-APVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLG 181
           +F + +  ++VV+WTAMI G ++ G +  + A     L   M   G+ PN  + S++L  
Sbjct: 315 VFLLMSGSQNVVSWTAMIDGCIQNGDIPLAAA-----LFSRMREDGVAPNDLTYSTILT- 368

Query: 182 CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTW 241
              +S      Q+H  V K+      T  T L+  Y K    E+A  +F  I +KDVV+W
Sbjct: 369 ---VSEASFPPQIHAQVIKTNYECTPTVGTALMVSYSKLCSTEEALSIFKMIDQKDVVSW 425

Query: 242 NAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC-NHAGLVDLGIQY 295
           +AM++ YAQ G    A   F KM   G+KP+  T  + + AC + A  VDLG Q+
Sbjct: 426 SAMLTCYAQAGDCNGATNAFIKMTMHGLKPNEFTISSAIDACASPAAGVDLGRQF 480



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 64/257 (24%), Positives = 126/257 (49%), Gaps = 8/257 (3%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI 164
           ++++  Y+    +    ++F+    ++VV WT++++GY++ G +      D + L   M 
Sbjct: 95  TSLVDMYMNWHSVLDGRKVFEGMLKRNVVTWTSLLTGYIQAGVLL-----DVMSLFFRMR 149

Query: 165 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 224
             G+ PN  + SSVL   +    + LG+ VH    K   C        L++MY KCG +E
Sbjct: 150 AEGVWPNPFTFSSVLSMVASQGMVDLGQHVHAQSIKFGCCSTVFVCNSLMNMYAKCGLVE 209

Query: 225 DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 284
           +A  +F  ++ +D+V+WN +++G   +G+  +AL+LF   +         T+  ++  C 
Sbjct: 210 EARVVFCRMETRDMVSWNTLMAGLVLNGRDLEALQLFHDSRSSITMLTESTYSTVINLC- 268

Query: 285 HAGLVDLGI-QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAI 343
            A L  LG+ +   S V  +G  +  +  T ++D   +AG+L +A+D+   M        
Sbjct: 269 -ANLKHLGLARQLHSSVLKHGFHSYGNVMTALMDAYNKAGQLDKALDVFLLMSGSQNVVS 327

Query: 344 FGTLLSACRVHKRLDLA 360
           +  ++  C  +  + LA
Sbjct: 328 WTAMIDGCIQNGDIPLA 344



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 64/269 (23%), Positives = 122/269 (45%), Gaps = 37/269 (13%)

Query: 48  ILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVS 103
           + +N   V+     F+ +  ++  +W ++++G++Q   +     LF  M  +    N  +
Sbjct: 100 MYMNWHSVLDGRKVFEGMLKRNVVTWTSLLTGYIQAGVLLDVMSLFFRMRAEGVWPNPFT 159

Query: 104 WSAMIS-----GYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSW------ 152
           +S+++S     G ++ GQ   A +  K     +V    ++++ Y K G VE +       
Sbjct: 160 FSSVLSMVASQGMVDLGQHVHA-QSIKFGCCSTVFVCNSLMNMYAKCGLVEEARVVFCRM 218

Query: 153 -AEDGLKLLRMMIGLGIRP-------------------NASSLSSVLLGCSHLSSLQLGK 192
              D +    +M GL +                       S+ S+V+  C++L  L L +
Sbjct: 219 ETRDMVSWNTLMAGLVLNGRDLEALQLFHDSRSSITMLTESTYSTVINLCANLKHLGLAR 278

Query: 193 QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ-RKDVVTWNAMISGYAQH 251
           Q+H  V K         +T L+  Y K G L+ A  +FL +   ++VV+W AMI G  Q+
Sbjct: 279 QLHSSVLKHGFHSYGNVMTALMDAYNKAGQLDKALDVFLLMSGSQNVVSWTAMIDGCIQN 338

Query: 252 GKGEKALRLFDKMKDEGMKPDSITFVALL 280
           G    A  LF +M+++G+ P+ +T+  +L
Sbjct: 339 GDIPLAAALFSRMREDGVAPNDLTYSTIL 367


>gi|347954524|gb|AEP33762.1| organelle transcript processing 82, partial [Hesperis matronalis]
          Length = 672

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 219/566 (38%), Positives = 321/566 (56%), Gaps = 52/566 (9%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
           ++ L     Q G+L+DAQ++FD+    DVVSY  +++    +   + +A   F  +PIKD
Sbjct: 113 HTSLISMYAQNGRLEDAQKVFDRSSHRDVVSYTALITG-YASRGYIESAQKMFDEIPIKD 171

Query: 70  TASWNTMISGFVQKKNMAKARDLFLAM------PEKNSV--------------------S 103
             SWN MISG+ +  N  KA +LF  M      P+++++                    S
Sbjct: 172 VVSWNAMISGYAETGNYKKALELFKEMMKTNVKPDESTMATVVSACAQSGSIELGRQVHS 231

Query: 104 W-------------SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVEN 150
           W             +A+I  Y +CG+++ A EL +    K V++W  +I GY      + 
Sbjct: 232 WINDHGFGSNLKIVNALIDLYSKCGEVETACELLEGLSNKDVISWNTLIGGYTHMNLYK- 290

Query: 151 SWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLV---FKSPLCKDT 207
               + L L + M+  G  PN  ++ S+L  C+HL ++ +G+ +H  +    K  +  + 
Sbjct: 291 ----EALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKKLKGVVVTNA 346

Query: 208 TAL-TPLISMYCKCGDLEDACKLFLEIQ-RKDVVTWNAMISGYAQHGKGEKALRLFDKMK 265
           ++L T LI MY KCGD++ A ++       + + TWNAMI G+A HG+   A  +F +M+
Sbjct: 347 SSLRTSLIDMYAKCGDIDAAPQVSDSSAFNRSLSTWNAMIFGFAMHGRANAAFDIFSRMR 406

Query: 266 DEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKL 325
             G++PD ITFV LL AC+H+G++DLG   F SM  DY I  K +HY CM+DLLG +G  
Sbjct: 407 KNGIEPDDITFVGLLSACSHSGMLDLGRNIFRSMRQDYNITPKLEHYGCMIDLLGHSGLF 466

Query: 326 VEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANI 385
            EA ++I  MP +P   I+ +LL AC++H  L+L E  A  L  + P N  G YV L+NI
Sbjct: 467 KEAEEMINTMPMEPDGVIWCSLLKACKIHGNLELGESFAKKLIKIEPEN-PGSYVLLSNI 525

Query: 386 YAAMKKWDDVARIRLSMKENNV-VKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKE 444
           YA   KW++V +IR  + +  +  K+PG S IE+ +VVHEF  GD++HP+   I+  L+E
Sbjct: 526 YATAGKWNEVXKIRTLLNDKGMKKKVPGCSSIEIDSVVHEFIIGDKLHPQNREIYGMLEE 585

Query: 445 LEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRV 504
           +E  ++ AG+VPD    L  + EE KE  L  HSEKLAIAFGLI    GT + + KNLRV
Sbjct: 586 MEVLLEEAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRV 645

Query: 505 CGDCHRATKYISAIEKREIIVRDTTR 530
           C +CH ATK IS I KREII RD TR
Sbjct: 646 CRNCHEATKLISKIYKREIIARDRTR 671



 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 80/253 (31%), Positives = 120/253 (47%), Gaps = 37/253 (14%)

Query: 117 LDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLS 176
           L  A+ +F+  P  + + W  M  G+       +S     LKL  +MI LG+ PN  +  
Sbjct: 25  LPYAISVFETIPEPNQLIWNIMFRGH-----ALSSDPVSALKLYVVMISLGLLPNFFTFP 79

Query: 177 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK-------- 228
            +L  C+   + + G+Q+H  V K     D    T LISMY + G LEDA K        
Sbjct: 80  FLLKSCAKSKTFKEGQQIHGHVLKLGFDLDLYVHTSLISMYAQNGRLEDAQKVFDRSSHR 139

Query: 229 -----------------------LFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMK 265
                                  +F EI  KDVV+WNAMISGYA+ G  +KAL LF +M 
Sbjct: 140 DVVSYTALITGYASRGYIESAQKMFDEIPIKDVVSWNAMISGYAETGNYKKALELFKEMM 199

Query: 266 DEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKL 325
              +KPD  T   ++ AC  +G ++LG Q   S +ND+G  +       ++DL  + G++
Sbjct: 200 KTNVKPDESTMATVVSACAQSGSIELGRQ-VHSWINDHGFGSNLKIVNALIDLYSKCGEV 258

Query: 326 VEAVDLIKKMPFK 338
             A +L++ +  K
Sbjct: 259 ETACELLEGLSNK 271


>gi|359495698|ref|XP_003635064.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Vitis vinifera]
          Length = 650

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 214/544 (39%), Positives = 317/544 (58%), Gaps = 15/544 (2%)

Query: 9   WNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDF--FQRLP 66
           + +++ GF    G   DA +L+ ++    ++  N +++ IL      +A  +        
Sbjct: 115 YTALIDGFVSS-GNYFDAIQLYSRMLHDSILPDNYLMASILKACGSQLALREGREVHSRA 173

Query: 67  IKDTASWNTMISGFVQK-----KNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAV 121
           +K   S N ++   + +       +  AR +F  MPE + V+ + MIS Y + G +++A 
Sbjct: 174 LKLGLSSNRLVRLRIMELYGKCGELGDARRVFEEMPE-DVVASTVMISSYSDQGLVEEAG 232

Query: 122 ELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLG 181
            +F     K  V WTAMI G+     V N      L+  R M G  +RPN  ++  VL  
Sbjct: 233 AVFSRVRRKDTVCWTAMIDGF-----VRNEEMNRALEAFRGMQGENVRPNEFTIVCVLSA 287

Query: 182 CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTW 241
           CS L +L++G+ VH  + K  +  +      LI+MY +CG +++A  +F E++ +DV+T+
Sbjct: 288 CSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITY 347

Query: 242 NAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN 301
           N MISG + +GK  +A+ LF  M    ++P ++TFV +L AC+H GLVD G + F SM  
Sbjct: 348 NTMISGLSMNGKSRQAIELFRVMIGRRLRPTNVTFVGVLNACSHGGLVDFGFKIFHSMTR 407

Query: 302 DYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAE 361
           DYG+  + +HY CMVDLLGR G+L EA DLI+ M   P   + GTLLSAC++HK L+L E
Sbjct: 408 DYGVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELGE 467

Query: 362 FAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTV 421
             A  L +   A+ +G YV L+++YA+  KW + A++R  MKE  + K PG S IEV   
Sbjct: 468 QVAKVLEDRGQAD-SGTYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSIEVNNE 526

Query: 422 VHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKL 481
           +HEF  GD  HP    I+EKL+EL + ++L GY P+ E  L  + +  KE  L  HSE+L
Sbjct: 527 IHEFLLGDLRHPRKERIYEKLEELNRLLRLEGYHPEKEVVLQDIEDGEKEWALAIHSERL 586

Query: 482 AIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSC 541
           AI +GLI     T IRV KNLRVC DCH A K I+ I +R+++VRD  RFH+F++G CSC
Sbjct: 587 AICYGLISTEPCTVIRVMKNLRVCYDCHSAIKLIAKITRRKVVVRDRNRFHYFENGACSC 646

Query: 542 GDYW 545
           GDYW
Sbjct: 647 GDYW 650



 Score = 46.2 bits (108), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 34/158 (21%), Positives = 75/158 (47%), Gaps = 7/158 (4%)

Query: 185 LSSLQLGKQVHQLV------FKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDV 238
           +S LQ  K ++Q++       ++   +D   +  L+    KC  ++ A ++F      +V
Sbjct: 53  ISLLQRSKHINQVLPIHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNV 112

Query: 239 VTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDS 298
             + A+I G+   G    A++L+ +M  + + PD+    ++L AC     +  G +   S
Sbjct: 113 YLYTALIDGFVSSGNYFDAIQLYSRMLHDSILPDNYLMASILKACGSQLALREGRE-VHS 171

Query: 299 MVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 336
                G+++       +++L G+ G+L +A  + ++MP
Sbjct: 172 RALKLGLSSNRLVRLRIMELYGKCGELGDARRVFEEMP 209


>gi|334185551|ref|NP_001189950.1| uncharacterized protein [Arabidopsis thaliana]
 gi|75274240|sp|Q9LUJ2.1|PP249_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g22690
 gi|9279687|dbj|BAB01244.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643145|gb|AEE76666.1| uncharacterized protein [Arabidopsis thaliana]
          Length = 842

 Score =  380 bits (976), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 195/473 (41%), Positives = 286/473 (60%), Gaps = 7/473 (1%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVV 133
           N +I  +++      A  +F  M  K  V+W+++++GY+E G++D A E F+  P K++V
Sbjct: 376 NALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIV 435

Query: 134 AWTAMISGYMKFGYVENSWAEDGLKLL-RMMIGLGIRPNASSLSSVLLGCSHLSSLQLGK 192
           +W  +ISG      V+ S  E+ +++   M    G+  +  ++ S+   C HL +L L K
Sbjct: 436 SWNTIISGL-----VQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAK 490

Query: 193 QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHG 252
            ++  + K+ +  D    T L+ M+ +CGD E A  +F  +  +DV  W A I   A  G
Sbjct: 491 WIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAG 550

Query: 253 KGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY 312
             E+A+ LFD M ++G+KPD + FV  L AC+H GLV  G + F SM+  +G++ +  HY
Sbjct: 551 NAERAIELFDDMIEQGLKPDGVAFVGALTACSHGGLVQQGKEIFYSMLKLHGVSPEDVHY 610

Query: 313 TCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNP 372
            CMVDLLGRAG L EAV LI+ MP +P   I+ +LL+ACRV   +++A +AA  +  L P
Sbjct: 611 GCMVDLLGRAGLLEEAVQLIEDMPMEPNDVIWNSLLAACRVQGNVEMAAYAAEKIQVLAP 670

Query: 373 ANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVH 432
               G YV L+N+YA+  +W+D+A++RLSMKE  + K PG S I++    HEF SGD  H
Sbjct: 671 ERT-GSYVLLSNVYASAGRWNDMAKVRLSMKEKGLRKPPGTSSIQIRGKTHEFTSGDESH 729

Query: 433 PELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPL 492
           PE+ +I   L E+ +R    G+VPDL   L  V E+ K  +L  HSEKLA+A+GLI    
Sbjct: 730 PEMPNIEAMLDEVSQRASHLGHVPDLSNVLMDVDEKEKIFMLSRHSEKLAMAYGLISSNK 789

Query: 493 GTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           GT IR+ KNLRVC DCH   K+ S +  REII+RD  RFH+ + G CSCGD+W
Sbjct: 790 GTTIRIVKNLRVCSDCHSFAKFASKVYNREIILRDNNRFHYIRQGKCSCGDFW 842



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 90/373 (24%), Positives = 163/373 (43%), Gaps = 52/373 (13%)

Query: 13  LAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTAS 72
           L  F  + G+L  A+++FD++ + +VVS+  M+ C     D    A D F R+   +  +
Sbjct: 175 LVHFYAECGELDSARKVFDEMSERNVVSWTSMI-CGYARRDFAKDAVDLFFRMVRDEEVT 233

Query: 73  WNTM-----ISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMISGYIECGQLDKAVEL 123
            N++     IS   + +++     ++  +     E N +  SA++  Y++C  +D A  L
Sbjct: 234 PNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRL 293

Query: 124 FKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCS 183
           F      ++    AM S Y++ G        + L +  +M+  G+RP+  S+ S +  CS
Sbjct: 294 FDEYGASNLDLCNAMASNYVRQGLTR-----EALGVFNLMMDSGVRPDRISMLSAISSCS 348

Query: 184 HLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNA 243
            L ++  GK  H  V ++           LI MY KC   + A ++F  +  K VVTWN+
Sbjct: 349 QLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNS 408

Query: 244 MISGYAQHGKGEKALRLFDKMKD--------------------------------EGMKP 271
           +++GY ++G+ + A   F+ M +                                EG+  
Sbjct: 409 IVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNA 468

Query: 272 DSITFVALLLACNHAGLVDLG--IQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAV 329
           D +T +++  AC H G +DL   I Y+   +   GI       T +VD+  R G    A+
Sbjct: 469 DGVTMMSIASACGHLGALDLAKWIYYY---IEKNGIQLDVRLGTTLVDMFSRCGDPESAM 525

Query: 330 DLIKKMPFKPQPA 342
            +   +  +   A
Sbjct: 526 SIFNSLTNRDVSA 538



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 63/210 (30%), Positives = 115/210 (54%), Gaps = 17/210 (8%)

Query: 77  ISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWT 136
           I G + K  M  A+DLF+          ++++  Y ECG+LD A ++F     ++VV+WT
Sbjct: 156 IHGLIVK--MGYAKDLFVQ---------NSLVHFYAECGELDSARKVFDEMSERNVVSWT 204

Query: 137 AMISGYMKFGYVENSWAEDGLKL-LRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVH 195
           +MI GY +       +A+D + L  RM+    + PN+ ++  V+  C+ L  L+ G++V+
Sbjct: 205 SMICGYAR-----RDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVY 259

Query: 196 QLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGE 255
             +  S +  +   ++ L+ MY KC  ++ A +LF E    ++   NAM S Y + G   
Sbjct: 260 AFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTR 319

Query: 256 KALRLFDKMKDEGMKPDSITFVALLLACNH 285
           +AL +F+ M D G++PD I+ ++ + +C+ 
Sbjct: 320 EALGVFNLMMDSGVRPDRISMLSAISSCSQ 349



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 53/191 (27%), Positives = 98/191 (51%), Gaps = 6/191 (3%)

Query: 146 GYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCK 205
           GY  +    + + L   M+  GI P+  +    L  C+   +   G Q+H L+ K    K
Sbjct: 108 GYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIVKMGYAK 167

Query: 206 DTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKM- 264
           D      L+  Y +CG+L+ A K+F E+  ++VV+W +MI GYA+    + A+ LF +M 
Sbjct: 168 DLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFFRMV 227

Query: 265 KDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGK 324
           +DE + P+S+T V ++ AC     ++ G + + + + + GI       + +VD+  +   
Sbjct: 228 RDEEVTPNSVTMVCVISACAKLEDLETGEKVY-AFIRNSGIEVNDLMVSALVDMYMKC-- 284

Query: 325 LVEAVDLIKKM 335
              A+D+ K++
Sbjct: 285 --NAIDVAKRL 293



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 70/280 (25%), Positives = 135/280 (48%), Gaps = 26/280 (9%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNS--DDVVAA 58
           M+ KT V WNS++AG+  + G++  A E F+ +P+ ++VS+N ++S ++  S  ++ +  
Sbjct: 398 MSNKTVVTWNSIVAGYV-ENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEV 456

Query: 59  FDFFQRLPIKDTASWNTMIS-----GFVQKKNMAKARDLFLAMPEKNSVSW-----SAMI 108
           F   Q     + A   TM+S     G +   ++AK    ++   EKN +       + ++
Sbjct: 457 FCSMQSQEGVN-ADGVTMMSIASACGHLGALDLAKWIYYYI---EKNGIQLDVRLGTTLV 512

Query: 109 SGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGI 168
             +  CG  + A+ +F     + V AWTA I      G      AE  ++L   MI  G+
Sbjct: 513 DMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGN-----AERAIELFDDMIEQGL 567

Query: 169 RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK-SPLCKDTTALTPLISMYCKCGDLEDAC 227
           +P+  +    L  CSH   +Q GK++   + K   +  +      ++ +  + G LE+A 
Sbjct: 568 KPDGVAFVGALTACSHGGLVQQGKEIFYSMLKLHGVSPEDVHYGCMVDLLGRAGLLEEAV 627

Query: 228 KLF--LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMK 265
           +L   + ++  DV+ WN++++     G  E A    +K++
Sbjct: 628 QLIEDMPMEPNDVI-WNSLLAACRVQGNVEMAAYAAEKIQ 666



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 57/122 (46%), Gaps = 7/122 (5%)

Query: 177 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLED---ACKLFLEI 233
           S L  C  +  L   K  H+ + K  L  D + +T L++  C+ G  E    A ++F   
Sbjct: 37  SSLKNCKTIDEL---KMFHRSLTKQGLDNDVSTITKLVARSCELGTRESLSFAKEVFENS 93

Query: 234 QRKDVV-TWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 292
           +       +N++I GYA  G   +A+ LF +M + G+ PD  TF   L AC  +     G
Sbjct: 94  ESYGTCFMYNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNG 153

Query: 293 IQ 294
           IQ
Sbjct: 154 IQ 155


>gi|334185836|ref|NP_001190038.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
 gi|218546754|sp|P0C899.1|PP271_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g49142
 gi|332644983|gb|AEE78504.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
          Length = 686

 Score =  380 bits (976), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 211/491 (42%), Positives = 278/491 (56%), Gaps = 21/491 (4%)

Query: 68  KDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVE----- 122
           +D  SWN+++ G+ Q +    A ++   M E   +S  A     +     +   E     
Sbjct: 204 RDVVSWNSLVVGYAQNQRFDDALEVCREM-ESVKISHDAGTMASLLPAVSNTTTENVMYV 262

Query: 123 ---LFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVL 179
               FK+   KS+V+W  MI  YMK     N+   + ++L   M   G  P+A S++SVL
Sbjct: 263 KDMFFKMGK-KSLVSWNVMIGVYMK-----NAMPVEAVELYSRMEADGFEPDAVSITSVL 316

Query: 180 LGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVV 239
             C   S+L LGK++H  + +  L  +      LI MY KCG LE A  +F  ++ +DVV
Sbjct: 317 PACGDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDVV 376

Query: 240 TWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSM 299
           +W AMIS Y   G+G  A+ LF K++D G+ PDSI FV  L AC+HAGL++ G   F  M
Sbjct: 377 SWTAMISAYGFSGRGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLM 436

Query: 300 VNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDL 359
            + Y I  + +H  CMVDLLGRAGK+ EA   I+ M  +P   ++G LL ACRVH   D+
Sbjct: 437 TDHYKITPRLEHLACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALLGACRVHSDTDI 496

Query: 360 AEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVG 419
              AA  LF L P   +G YV L+NIYA   +W++V  IR  MK   + K PG S +EV 
Sbjct: 497 GLLAADKLFQLAPEQ-SGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVN 555

Query: 420 TVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSE 479
            ++H F  GDR HP+   I+ +L  L K+MK  GYVPD E ALH V EE KE  L  HSE
Sbjct: 556 RIIHTFLVGDRSHPQSDEIYRELDVLVKKMKELGYVPDSESALHDVEEEDKETHLAVHSE 615

Query: 480 KLAIAFGLIKVP-----LGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHF 534
           KLAI F L+            IR+ KNLR+CGDCH A K IS I  REII+RDT RFH F
Sbjct: 616 KLAIVFALMNTKEEEEDSNNTIRITKNLRICGDCHVAAKLISQITSREIIIRDTNRFHVF 675

Query: 535 KDGTCSCGDYW 545
           + G CSCGDYW
Sbjct: 676 RFGVCSCGDYW 686



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 69/255 (27%), Positives = 122/255 (47%), Gaps = 11/255 (4%)

Query: 100 NSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKL 159
           NS     ++  Y     +  A ++F   P ++V+    MI  Y     V N +  +G+K+
Sbjct: 73  NSSLGVKLMRAYASLKDVASARKVFDEIPERNVIIINVMIRSY-----VNNGFYGEGVKV 127

Query: 160 LRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCK 219
              M G  +RP+  +   VL  CS   ++ +G+++H    K  L         L+SMY K
Sbjct: 128 FGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGK 187

Query: 220 CGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVAL 279
           CG L +A  +  E+ R+DVV+WN+++ GYAQ+ + + AL +  +M+   +  D+ T  +L
Sbjct: 188 CGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASL 247

Query: 280 LLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP--- 336
           L A ++    +  + Y   M    G  +    +  M+ +  +    VEAV+L  +M    
Sbjct: 248 LPAVSNTTTEN--VMYVKDMFFKMGKKSLVS-WNVMIGVYMKNAMPVEAVELYSRMEADG 304

Query: 337 FKPQPAIFGTLLSAC 351
           F+P      ++L AC
Sbjct: 305 FEPDAVSITSVLPAC 319



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 94/414 (22%), Positives = 171/414 (41%), Gaps = 98/414 (23%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCIL-----LNSDDV 55
           M+ +  V+WNS++ G+A Q  +  DA E+  ++    +      ++ +L       +++V
Sbjct: 201 MSRRDVVSWNSLVVGYA-QNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTENV 259

Query: 56  VAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAM---- 107
           +   D F ++  K   SWN MI  +++     +A +L+  M     E ++VS +++    
Sbjct: 260 MYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPAC 319

Query: 108 -----------ISGYIE--------------------CGQLDKAVELFKVAPVKSVVAWT 136
                      I GYIE                    CG L+KA ++F+    + VV+WT
Sbjct: 320 GDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDVVSWT 379

Query: 137 AMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQ 196
           AMIS Y   G+  +    D + L   +   G+ P++ +  + L  CSH   L+ G+   +
Sbjct: 380 AMISAY---GF--SGRGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFK 434

Query: 197 LVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEK 256
           L+       D   +TP +           AC                M+    + GK ++
Sbjct: 435 LM------TDHYKITPRLEHL--------AC----------------MVDLLGRAGKVKE 464

Query: 257 ALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIA-AKPDHYTCM 315
           A R    ++D  M+P+   + ALL AC      D+G+   D +   + +A  +  +Y  +
Sbjct: 465 AYRF---IQDMSMEPNERVWGALLGACRVHSDTDIGLLAADKL---FQLAPEQSGYYVLL 518

Query: 316 VDLLGRAGKLVEAV---DLIKKMPFKPQPA--------IFGTLLSACRVHKRLD 358
            ++  +AG+  E     +++K    K  P         I  T L   R H + D
Sbjct: 519 SNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVGDRSHPQSD 572



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 70/144 (48%), Gaps = 1/144 (0%)

Query: 192 KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQH 251
           + VH  +    L  +++    L+  Y    D+  A K+F EI  ++V+  N MI  Y  +
Sbjct: 59  RTVHSRIILEDLRCNSSLGVKLMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNN 118

Query: 252 GKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDH 311
           G   + +++F  M    ++PD  TF  +L AC+ +G + +G +   S     G+++    
Sbjct: 119 GFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGS-ATKVGLSSTLFV 177

Query: 312 YTCMVDLLGRAGKLVEAVDLIKKM 335
              +V + G+ G L EA  ++ +M
Sbjct: 178 GNGLVSMYGKCGFLSEARLVLDEM 201


>gi|302780908|ref|XP_002972228.1| hypothetical protein SELMODRAFT_97343 [Selaginella moellendorffii]
 gi|300159695|gb|EFJ26314.1| hypothetical protein SELMODRAFT_97343 [Selaginella moellendorffii]
          Length = 487

 Score =  380 bits (976), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 194/452 (42%), Positives = 283/452 (62%), Gaps = 11/452 (2%)

Query: 98  EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGL 157
           E N+V  +A+++ Y + G LD+A  +F+    K +V+WTA++S Y +    E+ + E  L
Sbjct: 43  ESNTVVATALVNMYGKAGCLDEATRVFRGLERKDLVSWTALMSAYSR----EDLYRE-AL 97

Query: 158 KLLRMMI--GL-GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPL-CKDTTALTPL 213
           +L R M   GL G +P+ S  + +L  C+ LS+   G+  H+ + +      D      +
Sbjct: 98  QLFREMTLHGLDGTKPDRSYFAFLLQACATLSAAAEGRLAHRRIQECGYDSSDGVLGLGI 157

Query: 214 ISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDS 273
           I+MY KCG+L  A ++F  +  +D V W  +ISGYA HG  E++L +F +M+ +G KPD 
Sbjct: 158 INMYGKCGNLRAAHEVFDGMSERDTVAWTTIISGYAHHGHSEESLLMFWRMQQDGSKPDG 217

Query: 274 ITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIK 333
           ++ + +L  C+HAGLV+ G  +F  +  ++G+     HY CM+DLLGR+G L  A  +I+
Sbjct: 218 VSLLCVLSVCSHAGLVEQGWDFFLDITKEFGVEPGEKHYGCMIDLLGRSGDLEAAEVMIR 277

Query: 334 KMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWD 393
           +MPF+     +   L+AC+VH   +  + AA  +  L P  AA  YV L+NIYAA  +WD
Sbjct: 278 RMPFQATAMNWAIFLAACKVHSDTERGKRAAEKVLELEPVPAA--YVSLSNIYAAAGEWD 335

Query: 394 DVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAG 453
            V R+R +MK   + K PG S IEV + VHEF +GD+ HP    I+  L+ L ++M+ +G
Sbjct: 336 QVDRVRSAMKAMGLQKDPGRSSIEVNSRVHEFWAGDKSHPRAAEIYGLLESLTRQMEGSG 395

Query: 454 YVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATK 513
           YVPD +  L  V EE KE+LL FHSEKLAIAFGL+  P G+ +R+ KNLRVCGDCH A K
Sbjct: 396 YVPDTKLVLLNVSEEQKERLLCFHSEKLAIAFGLLSTPAGSSLRIIKNLRVCGDCHTAAK 455

Query: 514 YISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           ++S I  REI +RD+ RFHHF+DG CSCGDYW
Sbjct: 456 FVSRIAGREIFMRDSQRFHHFQDGHCSCGDYW 487



 Score = 41.2 bits (95), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 2/76 (2%)

Query: 264 MKDEGMKPDSITFVALLLACNHAGLVDLGI-QYFDSMVNDYGIAAKPDHYTCMVDLLGRA 322
           M+ EG+ PD I FVA L AC  A L DL + +   S V + G+ +     T +V++ G+A
Sbjct: 1   MQQEGVLPDKICFVATLNACGGA-LADLRLGKLIHSCVLEAGLESNTVVATALVNMYGKA 59

Query: 323 GKLVEAVDLIKKMPFK 338
           G L EA  + + +  K
Sbjct: 60  GCLDEATRVFRGLERK 75


>gi|297833632|ref|XP_002884698.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330538|gb|EFH60957.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 685

 Score =  380 bits (976), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 205/533 (38%), Positives = 303/533 (56%), Gaps = 15/533 (2%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP----IKDTASWNTM 76
           G+L DA ++F++IP+  VV++  + S     +     A D F+++       D+     +
Sbjct: 160 GRLNDAHKVFEEIPERSVVTWTALFSG-YTTAGKHREAIDLFKKMVEMGVRPDSYFIVQV 218

Query: 77  ISGFVQKKNMAKARDLFLAMPE----KNSVSWSAMISGYIECGQLDKAVELFKVAPVKSV 132
           +S  V   ++     +   M E    KNS   + +++ Y +CG+++KA  +F     K +
Sbjct: 219 LSACVHVGDLDSGEWIVKHMEEMEMQKNSFVRTTLVNLYAKCGKMEKARSVFDSMGEKDI 278

Query: 133 VAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGK 192
           V W+ MI GY       NS+ ++G++    M+   ++P+  S+   L  C+ L +L LG+
Sbjct: 279 VTWSTMIQGY-----ASNSFPKEGIEFFLQMLQENLKPDQFSIVGFLSSCASLGALDLGE 333

Query: 193 QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHG 252
               L+ +     +      LI MY KCG +    ++F E++ KD+V  NA ISG A++G
Sbjct: 334 WGISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFKEMKEKDIVIMNAAISGLAKNG 393

Query: 253 KGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY 312
             + +  +F + +  G+ PD  TF+ LL  C HAGL+  G+++F+++   Y +    +HY
Sbjct: 394 HVKLSFAVFGQTEKLGISPDGSTFLGLLCGCVHAGLIQDGLRFFNAISCVYALKRTVEHY 453

Query: 313 TCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNP 372
            CMVDL GRAG L +A  LI  MP +P   ++G LLS CR+ K   LAE     L  L P
Sbjct: 454 GCMVDLWGRAGMLDDAYRLICDMPMRPNAIVWGALLSGCRLVKDTQLAETVLKELIALEP 513

Query: 373 ANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVH 432
            NA G YVQL+NIY+   +WD+ A +R  M    + K+PGYSWIE+   VHEF + D+ H
Sbjct: 514 WNA-GNYVQLSNIYSVSGRWDEAAEVRDMMNRKGMKKIPGYSWIELEGTVHEFLADDKSH 572

Query: 433 PELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPL 492
           P    I+ KL++L   M+L G+VP  EF    V +E KE++L  HSEKLA+AFGLI    
Sbjct: 573 PLSDKIYAKLEDLGNEMRLMGFVPTTEFVFFDVEDEEKERVLGHHSEKLAVAFGLISTDH 632

Query: 493 GTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           G  IRV KNLRVCGDCH   K IS I +REI+VRD  RFH F +G+CSC DYW
Sbjct: 633 GQVIRVVKNLRVCGDCHEVMKLISKITRREIVVRDNNRFHCFTNGSCSCNDYW 685



 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 88/358 (24%), Positives = 162/358 (45%), Gaps = 52/358 (14%)

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK------------------ 99
           +F  F      +   +NT+I+GFV      +  DLFL++ +                   
Sbjct: 64  SFLLFSHTQFPNIFLYNTLINGFVNNHLFHETLDLFLSIRKHGLNLHGFTFPLVLKACTR 123

Query: 100 ---------------------NSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAM 138
                                +  + ++++S Y   G+L+ A ++F+  P +SVV WTA+
Sbjct: 124 ASNRKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKVFEEIPERSVVTWTAL 183

Query: 139 ISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLV 198
            SGY   G        + + L + M+ +G+RP++  +  VL  C H+  L  G+ + + +
Sbjct: 184 FSGYTTAGK-----HREAIDLFKKMVEMGVRPDSYFIVQVLSACVHVGDLDSGEWIVKHM 238

Query: 199 FKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKAL 258
            +  + K++   T L+++Y KCG +E A  +F  +  KD+VTW+ MI GYA +   ++ +
Sbjct: 239 EEMEMQKNSFVRTTLVNLYAKCGKMEKARSVFDSMGEKDIVTWSTMIQGYASNSFPKEGI 298

Query: 259 RLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDL 318
             F +M  E +KPD  + V  L +C   G +DLG ++  S+++ +           ++D+
Sbjct: 299 EFFLQMLQENLKPDQFSIVGFLSSCASLGALDLG-EWGISLIDRHEFLTNLFMANALIDM 357

Query: 319 LGRAGKLVEAVDLIKKMPFKP----QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNP 372
             + G +    ++ K+M  K       AI G    A   H +L  A F       ++P
Sbjct: 358 YAKCGAMARGFEVFKEMKEKDIVIMNAAISGL---AKNGHVKLSFAVFGQTEKLGISP 412



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 59/250 (23%), Positives = 95/250 (38%), Gaps = 33/250 (13%)

Query: 192 KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQH 251
           KQVH  +    L  DT  +  L+           +  LF   Q  ++  +N +I+G+  +
Sbjct: 30  KQVHVSLIHHHLHHDTFLVNLLLKRTLFFRQTHYSFLLFSHTQFPNIFLYNTLINGFVNN 89

Query: 252 GKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN---DYGIAAK 308
               + L LF  ++  G+     TF  +L AC  A    LGI     +V    ++ +AA 
Sbjct: 90  HLFHETLDLFLSIRKHGLNLHGFTFPLVLKACTRASNRKLGIDLHSLVVKCGFNHDVAAM 149

Query: 309 -----------------------PDH----YTCMVDLLGRAGKLVEAVDLIKK---MPFK 338
                                  P+     +T +      AGK  EA+DL KK   M  +
Sbjct: 150 TSLLSIYSGSGRLNDAHKVFEEIPERSVVTWTALFSGYTTAGKHREAIDLFKKMVEMGVR 209

Query: 339 PQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARI 398
           P       +LSAC     LD  E+   ++  +     +     L N+YA   K +    +
Sbjct: 210 PDSYFIVQVLSACVHVGDLDSGEWIVKHMEEMEMQKNSFVRTTLVNLYAKCGKMEKARSV 269

Query: 399 RLSMKENNVV 408
             SM E ++V
Sbjct: 270 FDSMGEKDIV 279


>gi|20146256|dbj|BAB89038.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
            sativa Japonica Group]
 gi|125571007|gb|EAZ12522.1| hypothetical protein OsJ_02419 [Oryza sativa Japonica Group]
          Length = 1062

 Score =  380 bits (976), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 204/538 (37%), Positives = 326/538 (60%), Gaps = 21/538 (3%)

Query: 21   GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP----IKDTASWNTM 76
            G++ +  E+F+ +   DVVS+N ++  +  +   +  +   F  +     + +  ++   
Sbjct: 533  GRMSECWEIFNSMSAHDVVSWNSIMGVMASSQAPITESVQVFSNMMKSGLVPNKVTFVNF 592

Query: 77   ISGFVQKKNMAKARDLFLAM-----PEKNSVSWSAMISGYIECGQLDKAVELF-KVAPVK 130
            ++       +   + +   M      E N+V  +A++S Y + G +D    LF +++  +
Sbjct: 593  LAALTPLSVLELGKQIHSVMLKHGVTEDNAVD-NALMSCYAKSGDVDSCERLFSRMSGRR 651

Query: 131  SVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQL 190
              ++W +MISGY+  G+++     + +  + +M+      +  + S VL  C+ +++L+ 
Sbjct: 652  DAISWNSMISGYIYNGHLQ-----EAMDCVCLMMHSEQMMDHCTFSIVLNACASVAALER 706

Query: 191  GKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQ 250
            G ++H    +S L  D    + L+ MY KCG ++ A K+F  + +K+  +WN+MISGYA+
Sbjct: 707  GMEMHAFGLRSHLESDVVVESALVDMYSKCGRIDYASKVFHSMSQKNEFSWNSMISGYAR 766

Query: 251  HGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPD 310
            HG G KAL +F++M++ G  PD +TFV++L AC+HAGLV+ G+ YF+ ++ DYGI  + +
Sbjct: 767  HGLGRKALEIFEEMQESGESPDHVTFVSVLSACSHAGLVERGLDYFE-LMEDYGILPRIE 825

Query: 311  HYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHK---RLDLAEFAAMNL 367
            HY+C++DLLGRAG+L +  + +K+MP KP   I+ T+L AC+  K   ++DL   A+  L
Sbjct: 826  HYSCVIDLLGRAGELDKIQEYMKRMPMKPNTLIWRTVLVACQQSKHRAKIDLGTEASRML 885

Query: 368  FNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRS 427
              L P N    YV  +  +AA+ +W+D A+ R +MK   V K  G SW+ +   VH F +
Sbjct: 886  LELEPQNPVN-YVLSSKFHAAIGRWEDTAKARAAMKGAAVKKEAGRSWVTLTDGVHTFIA 944

Query: 428  GDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGL 487
            GDR HP    I+EKL  L ++++ AGYVP  E+ LH + EE KE+LL +HSEKLA+AF L
Sbjct: 945  GDRSHPNTKEIYEKLNFLIQKIRNAGYVPLTEYVLHDLEEENKEELLRYHSEKLAVAFVL 1004

Query: 488  IKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
             +   G PIR+ KNLRVCGDCH A +YIS I  R+II+RD+ RFHHFKDG CSCGDYW
Sbjct: 1005 TRSSSGGPIRIMKNLRVCGDCHTAFRYISQIVGRQIILRDSIRFHHFKDGKCSCGDYW 1062



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 83/257 (32%), Positives = 122/257 (47%), Gaps = 36/257 (14%)

Query: 91  DLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVEN 150
           DLFLA         + +++ Y +  +LD A  +F   P ++ V+WT +ISG++  G    
Sbjct: 99  DLFLA---------NHLVNSYAKGARLDAARRVFDGMPGRNAVSWTCLISGHVLSGL--- 146

Query: 151 SWAEDGLKLLRMMI--GLGIRPNASSLSSVLLGCSHLSSLQLG--KQVHQLVFKSPLCKD 206
              ED   L R M+  G G RP + +  SVL  C      +LG   QVH LV K+    +
Sbjct: 147 --PEDAFPLFRAMLREGPGCRPTSFTFGSVLRACQDSGPDRLGFAVQVHGLVSKTEFTSN 204

Query: 207 TTALTPLISMY--CKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKM 264
           TT    LISMY  C  G    A ++F     +D++TWNA++S YA+ G       LF  M
Sbjct: 205 TTVCNALISMYGSCSVGPPILAQRVFDTTPVRDLITWNALMSVYAKRGDAICTFTLFRAM 264

Query: 265 K--DEG--MKPDSITFVALL----LACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY--TC 314
           +  D G  ++P   TF +L+    L+    GL+D   Q F  ++         D Y  + 
Sbjct: 265 QYDDSGIELRPTEHTFGSLITATYLSSCSLGLLD---QLFVRVLKS---GCSSDLYVGSA 318

Query: 315 MVDLLGRAGKLVEAVDL 331
           +V    R G L EA D+
Sbjct: 319 LVSAFARHGMLDEAKDI 335



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 78/357 (21%), Positives = 169/357 (47%), Gaps = 27/357 (7%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
           +++++ FA+  G L +A++++  + + + V+ N +++ ++       AA  F   +  +D
Sbjct: 317 SALVSAFARH-GMLDEAKDIYLGLKERNAVTLNGLIAGLVKQQHGEAAAEIF---MGARD 372

Query: 70  TASWN--------TMISGF-VQKKNMAKARDLFLA------MPEKNSVSWSAMISGYIEC 114
           +A+ N        + I+ F   ++ + K R++         +  K +VS + +++ Y +C
Sbjct: 373 SAAVNVDTYVVLLSAIAEFSTAEQGLRKGREVHAHVLRAGHIYRKIAVS-NGLVNMYAKC 431

Query: 115 GQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASS 174
           G +DKA  +F++   +  ++W  +I+   + GY E +     L     M    I P+  +
Sbjct: 432 GAIDKACRVFQLMEARDRISWNTIITALDQNGYCEAAMMNYCL-----MRQNSIGPSNFA 486

Query: 175 LSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ 234
             S L  C+ L  L  G+Q+H    K  L  DT+    L+ MY +CG + +  ++F  + 
Sbjct: 487 AISGLSSCAGLGLLAAGQQLHCDAVKWGLYLDTSVSNALVKMYGECGRMSECWEIFNSMS 546

Query: 235 RKDVVTWNAMISGYA-QHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGI 293
             DVV+WN+++   A       +++++F  M   G+ P+ +TFV  L A     +++LG 
Sbjct: 547 AHDVVSWNSIMGVMASSQAPITESVQVFSNMMKSGLVPNKVTFVNFLAALTPLSVLELGK 606

Query: 294 QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSA 350
           Q    M+  +G+         ++    ++G +     L  +M  +     + +++S 
Sbjct: 607 QIHSVMLK-HGVTEDNAVDNALMSCYAKSGDVDSCERLFSRMSGRRDAISWNSMISG 662



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 74/332 (22%), Positives = 156/332 (46%), Gaps = 34/332 (10%)

Query: 26  AQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTA--------SWNTMI 77
           AQ +FD  P  D++++N ++S +     D +  F  F+ +   D+         ++ ++I
Sbjct: 226 AQRVFDTTPVRDLITWNALMS-VYAKRGDAICTFTLFRAMQYDDSGIELRPTEHTFGSLI 284

Query: 78  SG-FVQKKNMAKARDLFLAMPEKNSVS----WSAMISGYIECGQLDKAVELFKVAPVKSV 132
           +  ++   ++     LF+ + +    S     SA++S +   G LD+A +++     ++ 
Sbjct: 285 TATYLSSCSLGLLDQLFVRVLKSGCSSDLYVGSALVSAFARHGMLDEAKDIYLGLKERNA 344

Query: 133 VAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASS--------LSSVLLGCSH 184
           V    +I+G +K  + E + AE         I +G R +A+         LS++    + 
Sbjct: 345 VTLNGLIAGLVKQQHGEAA-AE---------IFMGARDSAAVNVDTYVVLLSAIAEFSTA 394

Query: 185 LSSLQLGKQVHQLVFKSPLCKDTTALT-PLISMYCKCGDLEDACKLFLEIQRKDVVTWNA 243
              L+ G++VH  V ++       A++  L++MY KCG ++ AC++F  ++ +D ++WN 
Sbjct: 395 EQGLRKGREVHAHVLRAGHIYRKIAVSNGLVNMYAKCGAIDKACRVFQLMEARDRISWNT 454

Query: 244 MISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDY 303
           +I+   Q+G  E A+  +  M+   + P +   ++ L +C   GL+  G Q     V  +
Sbjct: 455 IITALDQNGYCEAAMMNYCLMRQNSIGPSNFAAISGLSSCAGLGLLAAGQQLHCDAVK-W 513

Query: 304 GIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335
           G+         +V + G  G++ E  ++   M
Sbjct: 514 GLYLDTSVSNALVKMYGECGRMSECWEIFNSM 545



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 76/376 (20%), Positives = 137/376 (36%), Gaps = 122/376 (32%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQ----PDVVSY--------------- 41
           M+    V+WNS++   A  +  + ++ ++F  + +    P+ V++               
Sbjct: 545 MSAHDVVSWNSIMGVMASSQAPITESVQVFSNMMKSGLVPNKVTFVNFLAALTPLSVLEL 604

Query: 42  --------------------NIMLSCILLNSDDVVAAFDFFQRLP-IKDTASWNTMISGF 80
                               N ++SC    S DV +    F R+   +D  SWN+MISG+
Sbjct: 605 GKQIHSVMLKHGVTEDNAVDNALMSC-YAKSGDVDSCERLFSRMSGRRDAISWNSMISGY 663

Query: 81  VQKKNMAKARDLFLAMP---------------------------------------EKNS 101
           +   ++ +A D    M                                        E + 
Sbjct: 664 IYNGHLQEAMDCVCLMMHSEQMMDHCTFSIVLNACASVAALERGMEMHAFGLRSHLESDV 723

Query: 102 VSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLR 161
           V  SA++  Y +CG++D A ++F     K+  +W +MISGY + G          L++  
Sbjct: 724 VVESALVDMYSKCGRIDYASKVFHSMSQKNEFSWNSMISGYARHGL-----GRKALEIFE 778

Query: 162 MMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCG 221
            M   G  P+  +  SVL  CSH   ++ G    +L+       +   + P I  Y    
Sbjct: 779 EMQESGESPDHVTFVSVLSACSHAGLVERGLDYFELM-------EDYGILPRIEHYSCVI 831

Query: 222 DLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLL 281
           DL                            G+  +  ++ + MK   MKP+++ +  +L+
Sbjct: 832 DLL---------------------------GRAGELDKIQEYMKRMPMKPNTLIWRTVLV 864

Query: 282 ACN---HAGLVDLGIQ 294
           AC    H   +DLG +
Sbjct: 865 ACQQSKHRAKIDLGTE 880



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 62/266 (23%), Positives = 106/266 (39%), Gaps = 46/266 (17%)

Query: 192 KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQH 251
           + +H  V K  L  D      L++ Y K   L+ A ++F  +  ++ V+W  +ISG+   
Sbjct: 85  ESLHLEVVKRGLTHDLFLANHLVNSYAKGARLDAARRVFDGMPGRNAVSWTCLISGHVLS 144

Query: 252 GKGEKALRLFDKMKDE--GMKPDSITFVALLLACNHAGLVDLGI---------------- 293
           G  E A  LF  M  E  G +P S TF ++L AC  +G   LG                 
Sbjct: 145 GLPEDAFPLFRAMLREGPGCRPTSFTFGSVLRACQDSGPDRLGFAVQVHGLVSKTEFTSN 204

Query: 294 -QYFDSMVNDYG--------IAAKPDHYTCMVDLL---------GRAGKLVEAVDLIKKM 335
               +++++ YG        +A +    T + DL+          + G  +    L + M
Sbjct: 205 TTVCNALISMYGSCSVGPPILAQRVFDTTPVRDLITWNALMSVYAKRGDAICTFTLFRAM 264

Query: 336 PF-------KPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYV--QLANIY 386
            +       +P    FG+L++A  +     L     + +  L    ++  YV   L + +
Sbjct: 265 QYDDSGIELRPTEHTFGSLITATYL-SSCSLGLLDQLFVRVLKSGCSSDLYVGSALVSAF 323

Query: 387 AAMKKWDDVARIRLSMKENNVVKMPG 412
           A     D+   I L +KE N V + G
Sbjct: 324 ARHGMLDEAKDIYLGLKERNAVTLNG 349


>gi|356534289|ref|XP_003535689.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g43790-like [Glycine max]
          Length = 591

 Score =  380 bits (976), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 201/538 (37%), Positives = 303/538 (56%), Gaps = 19/538 (3%)

Query: 26  AQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMI-------- 77
           A  +F+ IP P +  YN ++S +  +SD +  AF  +  +    T   N+          
Sbjct: 55  AFTIFNHIPNPTLFLYNTLISSLTHHSDQIHLAFSLYNHILTHKTLQPNSFTFPSLFKAC 114

Query: 78  --SGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAW 135
               ++Q      A  L    P  +    +++++ Y + G+L  +  LF       +  W
Sbjct: 115 ASHPWLQHGPPLHAHVLKFLQPPYDPFVQNSLLNFYAKYGKLCVSRYLFDQISEPDLATW 174

Query: 136 TAMISGYMK--------FGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSS 187
             M++ Y +          + +   + + L L   M    I+PN  +L +++  CS+L +
Sbjct: 175 NTMLAAYAQSASHVSYSTSFEDADMSLEALHLFCDMQLSQIKPNEVTLVALISACSNLGA 234

Query: 188 LQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISG 247
           L  G   H  V ++ L  +    T L+ MY KCG L  AC+LF E+  +D   +NAMI G
Sbjct: 235 LSQGAWAHGYVLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDELSDRDTFCYNAMIGG 294

Query: 248 YAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAA 307
           +A HG G +AL L+  MK E + PD  T V  + AC+H GLV+ G++ F+SM   +G+  
Sbjct: 295 FAVHGHGNQALELYRNMKLEDLVPDGATIVVTMFACSHGGLVEEGLEIFESMKGVHGMEP 354

Query: 308 KPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNL 367
           K +HY C++DLLGRAG+L EA + ++ MP KP   ++ +LL A ++H  L++ E A  +L
Sbjct: 355 KLEHYGCLIDLLGRAGRLKEAEERLQDMPMKPNAILWRSLLGAAKLHGNLEMGEAALKHL 414

Query: 368 FNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRS 427
             L P   +G YV L+N+YA++ +W+DV R+R+ MK++ V K+PG+S +E+   +HEF +
Sbjct: 415 IELEP-ETSGNYVLLSNMYASIGRWNDVKRVRMLMKDHGVDKLPGFSLVEINGAMHEFLT 473

Query: 428 GDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGL 487
           GD+ HP    I+ K+ E+ +R+   G+ P     L  V EE KE  L +HSE+LAIAF L
Sbjct: 474 GDKAHPFSKEIYSKIGEINRRLLEYGHKPRTSEVLFDVEEEDKEDFLSYHSERLAIAFAL 533

Query: 488 IKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           I      PIR+ KNLRVCGDCH  TK ISA  +R+IIVRD  RFHHFKDG+CSC DYW
Sbjct: 534 IASSSSMPIRIIKNLRVCGDCHAITKLISAAYQRDIIVRDRNRFHHFKDGSCSCLDYW 591


>gi|356529928|ref|XP_003533538.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic-like [Glycine max]
          Length = 690

 Score =  380 bits (975), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 207/574 (36%), Positives = 319/574 (55%), Gaps = 47/574 (8%)

Query: 11  SVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDT 70
           S   G    RG  +    + +   +PD+   N +L  + +    ++ A   F  +P KD 
Sbjct: 125 SACVGLRSIRGVKRVFNYMVNSGFEPDLYVMNRVLF-VHVKCGLMLDARKLFDEMPEKDM 183

Query: 71  ASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISG---------------- 110
           ASW TMI GFV   N ++A  LFL M E+     S +++ MI                  
Sbjct: 184 ASWMTMIGGFVDSGNFSEAFGLFLCMWEEFNDGRSRTFTTMIRASAGLGLVQVGRQIHSC 243

Query: 111 -------------------YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENS 151
                              Y +CG ++ A  +F   P K+ V W ++I+ Y   GY    
Sbjct: 244 ALKRGVGDDTFVSCALIDMYSKCGSIEDAHCVFDQMPEKTTVGWNSIIASYALHGY---- 299

Query: 152 WAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALT 211
            +E+ L     M   G + +  ++S V+  C+ L+SL+  KQ H  + +     D  A T
Sbjct: 300 -SEEALSFYYEMRDSGAKIDHFTISIVIRICARLASLEYAKQAHAALVRRGYDTDIVANT 358

Query: 212 PLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKP 271
            L+  Y K G +EDA  +F  ++RK+V++WNA+I+GY  HG+GE+A+ +F++M  EGM P
Sbjct: 359 ALVDFYSKWGRMEDAWHVFNRMRRKNVISWNALIAGYGNHGQGEEAVEMFEQMLREGMIP 418

Query: 272 DSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDL 331
           + +TF+A+L AC+++GL + G + F SM  D+ +  +  HY CMV+LLGR G L EA +L
Sbjct: 419 NHVTFLAVLSACSYSGLSERGWEIFYSMSRDHKVKPRAMHYACMVELLGREGLLDEAYEL 478

Query: 332 IKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKK 391
           I+  PFKP   ++ TLL+ACR+H+ L+L + AA NL+ + P      Y+ L N+Y +  K
Sbjct: 479 IRSAPFKPTTNMWATLLTACRMHENLELGKLAAENLYGMEPEKLCN-YIVLLNLYNSSGK 537

Query: 392 WDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKL 451
             + A +  ++K   +  +P  +WIEV    + F  GD+ H +   I+EK+  +   +  
Sbjct: 538 LKEAAGVLQTLKRKGLRMLPACTWIEVKKQSYAFLCGDKSHSQTKEIYEKVNNMMVEISR 597

Query: 452 AGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRA 511
            GYV + +  L  V EE ++++L +HSEKLAIAFGLI  P  TP+++ +  RVCGDCH A
Sbjct: 598 HGYVEENKALLPDVDEE-EQRILKYHSEKLAIAFGLINTPHWTPLQITQGHRVCGDCHSA 656

Query: 512 TKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
            K+I+ +  REI+VRD +RFHHF+DG+CSCGDYW
Sbjct: 657 IKFIAMVTGREIVVRDASRFHHFRDGSCSCGDYW 690



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 79/172 (45%), Gaps = 1/172 (0%)

Query: 167 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 226
           G     S+  +++  C  L S++  K+V   +  S    D   +  ++ ++ KCG + DA
Sbjct: 112 GFDVGGSTYDALVSACVGLRSIRGVKRVFNYMVNSGFEPDLYVMNRVLFVHVKCGLMLDA 171

Query: 227 CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHA 286
            KLF E+  KD+ +W  MI G+   G   +A  LF  M +E     S TF  ++ A    
Sbjct: 172 RKLFDEMPEKDMASWMTMIGGFVDSGNFSEAFGLFLCMWEEFNDGRSRTFTTMIRASAGL 231

Query: 287 GLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 338
           GLV +G Q   S     G+         ++D+  + G + +A  +  +MP K
Sbjct: 232 GLVQVGRQ-IHSCALKRGVGDDTFVSCALIDMYSKCGSIEDAHCVFDQMPEK 282



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 64/278 (23%), Positives = 118/278 (42%), Gaps = 47/278 (16%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDA----QELFDKIPQPDVVSYNIMLS-CILLNSDDV 55
           M  KTTV WNS++A +A   G  ++A     E+ D   + D  + +I++  C  L S + 
Sbjct: 279 MPEKTTVGWNSIIASYALH-GYSEEALSFYYEMRDSGAKIDHFTISIVIRICARLASLEY 337

Query: 56  V--AAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE 113
              A     +R    D  +   ++  + +   M  A  +F  M  KN +SW+A+I+GY  
Sbjct: 338 AKQAHAALVRRGYDTDIVANTALVDFYSKWGRMEDAWHVFNRMRRKNVISWNALIAGYGN 397

Query: 114 CGQLDKAVELF----KVAPVKSVVAWTAMISGYMKFGYVENSW----------------- 152
            GQ ++AVE+F    +   + + V + A++S     G  E  W                 
Sbjct: 398 HGQGEEAVEMFEQMLREGMIPNHVTFLAVLSACSYSGLSERGWEIFYSMSRDHKVKPRAM 457

Query: 153 ---------AEDGL--KLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVF-- 199
                      +GL  +   ++     +P  +  +++L  C    +L+LGK   + ++  
Sbjct: 458 HYACMVELLGREGLLDEAYELIRSAPFKPTTNMWATLLTACRMHENLELGKLAAENLYGM 517

Query: 200 -KSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK 236
               LC        L+++Y   G L++A  +   ++RK
Sbjct: 518 EPEKLCN----YIVLLNLYNSSGKLKEAAGVLQTLKRK 551


>gi|302804779|ref|XP_002984141.1| hypothetical protein SELMODRAFT_119895 [Selaginella moellendorffii]
 gi|300147990|gb|EFJ14651.1| hypothetical protein SELMODRAFT_119895 [Selaginella moellendorffii]
          Length = 487

 Score =  380 bits (975), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 194/452 (42%), Positives = 283/452 (62%), Gaps = 11/452 (2%)

Query: 98  EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGL 157
           E N+V  +A+++ Y + G LD+A  +F+    K +V+WTA++S Y +    E+ + E  L
Sbjct: 43  ESNTVVATALVNMYGKAGCLDEATRVFRGLGRKDLVSWTALMSAYSR----EDLYRE-AL 97

Query: 158 KLLRMMI--GL-GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPL-CKDTTALTPL 213
           +L R M   GL G +P+ S  + +L  C+ LS+   G+  H+ + +      D      +
Sbjct: 98  QLFREMTLHGLDGTKPDRSYFAFLLQACATLSAAAEGRLAHRRIQECGYDSSDGVLGLGI 157

Query: 214 ISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDS 273
           I+MY KCG+L  A ++F  +  +D V W  +ISGYA HG  E++L +F +M+ +G KPD 
Sbjct: 158 INMYGKCGNLRAAHEVFDGMSERDTVAWTTIISGYAHHGHSEESLLMFWRMQQDGSKPDG 217

Query: 274 ITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIK 333
           ++ + +L  C+HAGLV+ G  +F  +  ++G+     HY CM+DLLGR+G L  A  +I+
Sbjct: 218 VSLLCVLSVCSHAGLVEQGWDFFLDITKEFGVEPGEKHYGCMIDLLGRSGDLEAAEVMIR 277

Query: 334 KMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWD 393
           +MPF+     +   L+AC+VH   +  + AA  +  L P  AA  YV L+NIYAA  +WD
Sbjct: 278 RMPFQATAMNWAIFLAACKVHSDTERGKRAAEKVLELEPVPAA--YVSLSNIYAAAGEWD 335

Query: 394 DVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAG 453
            V R+R +MK   + K PG S IEV + VHEF +GD+ HP    I+  L+ L ++M+ +G
Sbjct: 336 QVDRVRSAMKAMGLQKDPGRSSIEVNSRVHEFWAGDKSHPRAAEIYGLLESLTRQMEGSG 395

Query: 454 YVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATK 513
           YVPD +  L  V EE KE+LL FHSEKLAIAFGL+  P G+ +R+ KNLRVCGDCH A K
Sbjct: 396 YVPDTKLVLLNVSEEQKERLLCFHSEKLAIAFGLLSTPAGSSLRIIKNLRVCGDCHTAAK 455

Query: 514 YISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           ++S I  REI +RD+ RFHHF+DG CSCGDYW
Sbjct: 456 FVSRIAGREIFMRDSQRFHHFQDGHCSCGDYW 487



 Score = 40.8 bits (94), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 2/76 (2%)

Query: 264 MKDEGMKPDSITFVALLLACNHAGLVDLGI-QYFDSMVNDYGIAAKPDHYTCMVDLLGRA 322
           M+ EG+ PD I FVA L AC  A L DL + +   S V + G+ +     T +V++ G+A
Sbjct: 1   MQQEGVLPDKICFVATLNACGGA-LADLRLGKLIHSCVLEAGLESNTVVATALVNMYGKA 59

Query: 323 GKLVEAVDLIKKMPFK 338
           G L EA  + + +  K
Sbjct: 60  GCLDEATRVFRGLGRK 75


>gi|108863919|gb|ABG22332.1| vegetative storage protein, putative [Oryza sativa Japonica Group]
          Length = 645

 Score =  380 bits (975), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 211/544 (38%), Positives = 302/544 (55%), Gaps = 16/544 (2%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSD---DVVAAFDFFQRLP 66
            S+L+ +AK  G L  AQ +FD++P P  V +  +++  +   D    V  A + F    
Sbjct: 110 TSLLSLYAKC-GLLHRAQRVFDEMPHPSTVPWTALITAYMDAGDLREAVHVARNAFANGM 168

Query: 67  IKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISG-----YIECGQLDKAV 121
             D+ +   +++   +  ++A    ++ A  E+  V+ S  ++      Y++CG++ KA 
Sbjct: 169 RPDSFTAVRVLTACARIADLATGETVWRA-AEQEGVAQSVFVATAAVDLYVKCGEMAKAR 227

Query: 122 ELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLG 181
           E+F     K  VAW AM+ GY   G+       + L L   M   G++P+  +++  L  
Sbjct: 228 EVFDKMRHKDAVAWGAMVGGYASNGH-----PREALDLFLAMQAEGMKPDCYAVAGALSA 282

Query: 182 CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTW 241
           C+ L +L LG+Q  ++V       +    T LI MY KCG   +A  +F ++++KD++ W
Sbjct: 283 CTRLGALDLGRQAIRMVDWDEFLDNPVLGTALIDMYAKCGSTVEAWVVFQQMRKKDIIVW 342

Query: 242 NAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN 301
           NAMI G    G  + A  L  +M+  G+K +  TF+ LL +C H GL+  G +YF +M  
Sbjct: 343 NAMILGLGMTGHEKIAFALVGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTK 402

Query: 302 DYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAE 361
            Y I+ + +HY CMVDLL RAG L EA  L+  MP      I G LL  C++H+  +LAE
Sbjct: 403 LYHISPRIEHYGCMVDLLSRAGLLQEAHQLVDDMPMPANAVILGALLGGCKIHRNTELAE 462

Query: 362 FAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTV 421
                L  L P N+ G YV L+NIY+   +W+D A++RL MK   V K+P  SW+E    
Sbjct: 463 HVLKQLILLEPWNS-GNYVMLSNIYSNRGRWEDAAKLRLDMKAKGVEKVPACSWVEFEGK 521

Query: 422 VHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKL 481
           VHEFR GD+ HP    I++KL EL   MK  GY P  E  +  V +E KE  L+ HSEKL
Sbjct: 522 VHEFRVGDKSHPLSDQIYKKLDELGLEMKTMGYEPTTEVVMFDVEDEEKEHTLVHHSEKL 581

Query: 482 AIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSC 541
           AIAF L+    G  IRV KNLRVC DCH A K +S I  REIIVRD  RFH F+DG+CSC
Sbjct: 582 AIAFNLLITGPGETIRVTKNLRVCSDCHTAIKLVSRITHREIIVRDNNRFHCFRDGSCSC 641

Query: 542 GDYW 545
            DYW
Sbjct: 642 NDYW 645



 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 66/209 (31%), Positives = 96/209 (45%), Gaps = 9/209 (4%)

Query: 170 PNASSLSS--VLLGCSHLS-SLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 226
           PN S L+    L   S L   L+ G+Q+H    K P   +   LT L+S+Y KCG L  A
Sbjct: 66  PNPSHLTIPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLSLYAKCGLLHRA 125

Query: 227 CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHA 286
            ++F E+     V W A+I+ Y   G   +A+ +       GM+PDS T V +L AC  A
Sbjct: 126 QRVFDEMPHPSTVPWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTAC--A 183

Query: 287 GLVDLGI-QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFG 345
            + DL   +         G+A      T  VDL  + G++ +A ++  KM  K   A +G
Sbjct: 184 RIADLATGETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVA-WG 242

Query: 346 TLLS--ACRVHKRLDLAEFAAMNLFNLNP 372
            ++   A   H R  L  F AM    + P
Sbjct: 243 AMVGGYASNGHPREALDLFLAMQAEGMKP 271


>gi|359483532|ref|XP_002265722.2| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 824

 Score =  380 bits (975), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 205/554 (37%), Positives = 314/554 (56%), Gaps = 50/554 (9%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQ----PDVVSYNIML-----SCILLN 51
           M  ++ V+W S++AG+A++ G    +  LF ++ +    PD+ +   +L     + +L N
Sbjct: 312 MGERSVVSWTSMIAGYARE-GLSDMSVRLFHEMEKEGISPDIFTITTILHACACTGLLEN 370

Query: 52  SDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGY 111
             DV                        ++++  M    DLF++         +A++  Y
Sbjct: 371 GKDV----------------------HNYIKENKMQS--DLFVS---------NALMDMY 397

Query: 112 IECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPN 171
            +CG +  A  +F    VK +V+W  MI GY K     NS   + L L   M     +PN
Sbjct: 398 AKCGSMGDAHSVFSEMQVKDIVSWNTMIGGYSK-----NSLPNEALNLFVEM-QYNSKPN 451

Query: 172 ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFL 231
           + +++ +L  C+ L++L+ G+++H  + ++    D      L+ MY KCG L  A  LF 
Sbjct: 452 SITMACILPACASLAALERGQEIHGHILRNGFSLDRHVANALVDMYLKCGALGLARLLFD 511

Query: 232 EIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDL 291
            I  KD+V+W  MI+GY  HG G +A+  F++M++ G++PD ++F+++L AC+H+GL+D 
Sbjct: 512 MIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYACSHSGLLDE 571

Query: 292 GIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSAC 351
           G  +F+ M N+  I  K +HY C+VDLL RAG L +A   IK MP +P   I+G LL  C
Sbjct: 572 GWGFFNMMRNNCCIEPKSEHYACIVDLLARAGNLSKAYKFIKMMPIEPDATIWGALLCGC 631

Query: 352 RVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMP 411
           R++  + LAE  A ++F L P N  G YV LANIYA  +KW++V ++R  +    + K P
Sbjct: 632 RIYHDVKLAEKVAEHVFELEPEN-TGYYVLLANIYAEAEKWEEVKKLRERIGRRGLRKNP 690

Query: 412 GYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKE 471
           G SWIE+   VH F +GD  HP    I   LK+   RMK  G+ P + +AL    +  KE
Sbjct: 691 GCSWIEIKGKVHIFVTGDSSHPLANKIELLLKKTRTRMKEEGHFPKMRYALIKADDTEKE 750

Query: 472 QLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRF 531
             L  HSEK+A+AFG++ +P G  +RV KNLRVCGDCH   K++S + KR+II+RD+ RF
Sbjct: 751 MALCGHSEKIAMAFGILSLPPGKTVRVTKNLRVCGDCHEMAKFMSKMVKRDIILRDSNRF 810

Query: 532 HHFKDGTCSCGDYW 545
           HHFKDG+CSC  +W
Sbjct: 811 HHFKDGSCSCRGHW 824



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 92/341 (26%), Positives = 170/341 (49%), Gaps = 29/341 (8%)

Query: 21  GKLKDAQELFDKIPQPDV---VSYNIMLSCILLNS-DDVVAAFDFFQRLPIK-DTASWNT 75
           G L+ A EL ++ P+PD+      +++  C  L S  D        Q   ++ D    + 
Sbjct: 82  GNLRRAMELINQSPKPDLELRTYCSVLQLCADLKSIQDGRRIHSIIQSNDVEVDGVLGSK 141

Query: 76  MISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFK------VAPV 129
           ++  +V   ++ + R +F  +  +    W+ +++GY + G   +++ LFK      +  V
Sbjct: 142 LVFMYVTCGDLREGRRIFDKVANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRRV 201

Query: 130 KS------------VVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSS 177
           +S            V++W +MISGY     V N  +E GL L   M+ LGI  + +++ S
Sbjct: 202 ESARKLFDELGDRDVISWNSMISGY-----VSNGLSEKGLDLFEQMLLLGINTDLATMVS 256

Query: 178 VLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKD 237
           V+ GCS+   L LG+ +H    K+   K+ T    L+ MY K G+L  A ++F  +  + 
Sbjct: 257 VVAGCSNTGMLLLGRALHGYAIKASFGKELTLNNCLLDMYSKSGNLNSAIQVFETMGERS 316

Query: 238 VVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFD 297
           VV+W +MI+GYA+ G  + ++RLF +M+ EG+ PD  T   +L AC   GL++ G +   
Sbjct: 317 VVSWTSMIAGYAREGLSDMSVRLFHEMEKEGISPDIFTITTILHACACTGLLENG-KDVH 375

Query: 298 SMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 338
           + + +  + +       ++D+  + G + +A  +  +M  K
Sbjct: 376 NYIKENKMQSDLFVSNALMDMYAKCGSMGDAHSVFSEMQVK 416


>gi|357480897|ref|XP_003610734.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512069|gb|AES93692.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 726

 Score =  380 bits (975), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 206/547 (37%), Positives = 315/547 (57%), Gaps = 16/547 (2%)

Query: 7   VNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP 66
           V WN ++ G+  Q G   DA  LF+ +   D+   +++L C +L++        + + + 
Sbjct: 188 VAWNMIIDGYC-QNGHYDDALRLFEDMRSSDMKPDSVIL-CTVLSACGHAGNLSYGRTIH 245

Query: 67  --IKDTAS------WNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLD 118
             +KD            +I+ +     M  AR ++  +  K+ +  +AM+SGY + G + 
Sbjct: 246 EFVKDNGYAIDSHLQTALINMYANCGAMDLARKIYDGLSSKHLIVSTAMLSGYAKLGMVK 305

Query: 119 KAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSV 178
            A  +F     + +V W+AMISGY      E+   ++ LKL   M+     P+  ++ SV
Sbjct: 306 DARFIFDQMIERDLVCWSAMISGY-----AESDQPQEALKLFDEMLQKRSVPDQITMLSV 360

Query: 179 LLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDV 238
           +  CSH+ +L     +H  V +S   +  +    LI MY KCG+L  A ++F  + RK+V
Sbjct: 361 ISACSHVGALAQANWIHTYVDRSGFGRALSVNNALIDMYAKCGNLVKAREVFENMPRKNV 420

Query: 239 VTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDS 298
           ++W++MI+ +A HG  + A++LF +MK+  ++P+ +TF+ +L AC HAGLV+ G + F S
Sbjct: 421 ISWSSMINAFAMHGNADSAIKLFRRMKEVNIEPNGVTFIGVLYACGHAGLVEEGEKLFSS 480

Query: 299 MVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLD 358
           M+N++GI+   +HY CMVDL  RA  L +A++LI+ MPF P   I+G+L+SAC+VH   +
Sbjct: 481 MINEHGISPTREHYGCMVDLYCRANFLRKAIELIETMPFAPNVIIWGSLMSACQVHGEAE 540

Query: 359 LAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEV 418
           L EFAA  L  L P +  G  V L+NIYA  K+W+DV  IR SM    + K    S IE+
Sbjct: 541 LGEFAAKRLLELEP-DHDGALVVLSNIYAKEKRWNDVGLIRKSMSYKGISKEKASSRIEI 599

Query: 419 GTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHS 478
              VH F   DR H +   I+EKL E+  ++KL GY P     L  + EE K++L+L+HS
Sbjct: 600 NNQVHMFMMADRYHKQSDEIYEKLDEVVSKLKLVGYKPSTSGILIDLEEEDKKELVLWHS 659

Query: 479 EKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGT 538
           EKLA+ +GLI     + IR+ KNLR+C DCH   K +S + + EI+VRD TRFHH   G 
Sbjct: 660 EKLAVCYGLISRRNESCIRIVKNLRICEDCHSFMKLVSKVYQIEIVVRDRTRFHHCSGGI 719

Query: 539 CSCGDYW 545
           CSC DYW
Sbjct: 720 CSCRDYW 726



 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 80/301 (26%), Positives = 142/301 (47%), Gaps = 40/301 (13%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI 164
           + +I+ Y  C ++  A  LF        VAW  +I GY + G+      +D L+L   M 
Sbjct: 160 TGLIAMYASCRRIMDARLLFDKMCHPDAVAWNMIIDGYCQNGHY-----DDALRLFEDMR 214

Query: 165 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 224
              ++P++  L +VL  C H  +L  G+ +H+ V  +    D+   T LI+MY  CG ++
Sbjct: 215 SSDMKPDSVILCTVLSACGHAGNLSYGRTIHEFVKDNGYAIDSHLQTALINMYANCGAMD 274

Query: 225 -------------------------------DACKLFLEIQRKDVVTWNAMISGYAQHGK 253
                                          DA  +F ++  +D+V W+AMISGYA+  +
Sbjct: 275 LARKIYDGLSSKHLIVSTAMLSGYAKLGMVKDARFIFDQMIERDLVCWSAMISGYAESDQ 334

Query: 254 GEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYT 313
            ++AL+LFD+M  +   PD IT ++++ AC+H G +     +  + V+  G         
Sbjct: 335 PQEALKLFDEMLQKRSVPDQITMLSVISACSHVGALAQA-NWIHTYVDRSGFGRALSVNN 393

Query: 314 CMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLA--EFAAMNLFNLN 371
            ++D+  + G LV+A ++ + MP K   + + ++++A  +H   D A   F  M   N+ 
Sbjct: 394 ALIDMYAKCGNLVKAREVFENMPRKNVIS-WSSMINAFAMHGNADSAIKLFRRMKEVNIE 452

Query: 372 P 372
           P
Sbjct: 453 P 453



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 57/162 (35%), Positives = 82/162 (50%), Gaps = 5/162 (3%)

Query: 174 SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI 233
           S  S+L   S +S+   G ++H L  K     D    T LI+MY  C  + DA  LF ++
Sbjct: 123 SFPSLLKAVSKVSAFNHGLEIHGLASKLGFVDDPFIQTGLIAMYASCRRIMDARLLFDKM 182

Query: 234 QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGI 293
              D V WN +I GY Q+G  + ALRLF+ M+   MKPDS+    +L AC HAG +  G 
Sbjct: 183 CHPDAVAWNMIIDGYCQNGHYDDALRLFEDMRSSDMKPDSVILCTVLSACGHAGNLSYG- 241

Query: 294 QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335
           +     V D G A      T ++++    G    A+DL +K+
Sbjct: 242 RTIHEFVKDNGYAIDSHLQTALINMYANCG----AMDLARKI 279


>gi|224119910|ref|XP_002318193.1| predicted protein [Populus trichocarpa]
 gi|222858866|gb|EEE96413.1| predicted protein [Populus trichocarpa]
          Length = 533

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 205/536 (38%), Positives = 314/536 (58%), Gaps = 19/536 (3%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP-----IKDTASWNT 75
           G   D +++FD++   D+V +  M++     ++    A   F+++      + D+ +  +
Sbjct: 6   GLFVDCRKIFDEMSTKDLVCWTAMITA-YEQAEKPEEALILFKKMQQEEGLLADSIAVVS 64

Query: 76  MISGFVQKKNMAKARDLFLAMPEKNSVS----WSAMISGYIECGQLDKAVELFKVAPVKS 131
           + S   Q  ++  A  +      K+ +      +++++ + +CG  +KA  +F +   + 
Sbjct: 65  VASAVGQLGDVKNAHTVHGYAFRKSLIEELCVGNSILAMHTKCGNTEKARLVFDMMMERD 124

Query: 132 VVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLG 191
           V++W +M+SGY      +N  A + L L   M     +P   +   ++  C++L    LG
Sbjct: 125 VISWNSMLSGY-----TQNGQATEALLLFDEMRDSDCQPTPVTALIMVSACAYLGFRHLG 179

Query: 192 KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI--QRKDVVTWNAMISGYA 249
           ++ H  +  S +  DT     L+ MY KCGDLE A  LF  I    ++  +WN +ISGY 
Sbjct: 180 RKFHDFIVDSRMEIDTNLSNALMDMYAKCGDLEKAVDLFNGIPPTERNAGSWNVLISGYG 239

Query: 250 QHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKP 309
            HG G++AL LF +M++EG++P+  TF ++L AC+HAGL+D G + F  M     +  + 
Sbjct: 240 MHGHGKEALELFSRMQEEGVEPNHFTFTSILSACSHAGLIDEGRKCFAEM-KRLSVTLED 298

Query: 310 DHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFN 369
            H+ C+VD+LGRAG L EA DLIK+MP  P   ++G LL AC++H  ++L + AA NL  
Sbjct: 299 KHHACVVDMLGRAGLLQEAFDLIKEMPSPPSDGVWGALLLACKIHGNMELGKTAASNLLQ 358

Query: 370 LNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGD 429
           L P N  G YV ++NIYAA  KW +V ++R  MK   + K   +S IE G  +  F + D
Sbjct: 359 LEP-NHTGYYVLMSNIYAASNKWKEVWKLRQDMKNKGLKKPAAFSMIEYGKDILGFHTAD 417

Query: 430 RVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIK 489
           + +P    +++K++ L   MK+AGYVPDL  ALH V EE KE++L +HSEKLA+AFG++K
Sbjct: 418 QENPYRHEVYKKMESLAIEMKMAGYVPDLSCALHDVEEEDKERMLNYHSEKLAVAFGVLK 477

Query: 490 VPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           +  G  IRV KNLRVC DCH A KYIS I +R+IIVRD  RFHHF+ GTCSC DYW
Sbjct: 478 IDPGMVIRVTKNLRVCNDCHSAFKYISHIYQRKIIVRDANRFHHFQGGTCSCKDYW 533



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 66/227 (29%), Positives = 118/227 (51%), Gaps = 7/227 (3%)

Query: 111 YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLL-RMMIGLGIR 169
           Y +CG      ++F     K +V WTAMI+      Y +    E+ L L  +M    G+ 
Sbjct: 2   YAKCGLFVDCRKIFDEMSTKDLVCWTAMIT-----AYEQAEKPEEALILFKKMQQEEGLL 56

Query: 170 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 229
            ++ ++ SV      L  ++    VH   F+  L ++      +++M+ KCG+ E A  +
Sbjct: 57  ADSIAVVSVASAVGQLGDVKNAHTVHGYAFRKSLIEELCVGNSILAMHTKCGNTEKARLV 116

Query: 230 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLV 289
           F  +  +DV++WN+M+SGY Q+G+  +AL LFD+M+D   +P  +T + ++ AC + G  
Sbjct: 117 FDMMMERDVISWNSMLSGYTQNGQATEALLLFDEMRDSDCQPTPVTALIMVSACAYLGFR 176

Query: 290 DLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 336
            LG ++ D +V D  +    +    ++D+  + G L +AVDL   +P
Sbjct: 177 HLGRKFHDFIV-DSRMEIDTNLSNALMDMYAKCGDLEKAVDLFNGIP 222



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/75 (46%), Positives = 45/75 (60%), Gaps = 1/75 (1%)

Query: 216 MYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKM-KDEGMKPDSI 274
           MY KCG   D  K+F E+  KD+V W AMI+ Y Q  K E+AL LF KM ++EG+  DSI
Sbjct: 1   MYAKCGLFVDCRKIFDEMSTKDLVCWTAMITAYEQAEKPEEALILFKKMQQEEGLLADSI 60

Query: 275 TFVALLLACNHAGLV 289
             V++  A    G V
Sbjct: 61  AVVSVASAVGQLGDV 75


>gi|359495599|ref|XP_003635033.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Vitis vinifera]
          Length = 650

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 201/460 (43%), Positives = 284/460 (61%), Gaps = 7/460 (1%)

Query: 86  MAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKF 145
           +  AR +F  MPE + V+ + MIS Y + G +++A  +F     K  V WTAMI G+   
Sbjct: 198 LGDARRVFEEMPE-DVVASTVMISSYSDQGLVEEAGAVFSRVRRKDTVCWTAMIDGF--- 253

Query: 146 GYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCK 205
             V N      L+  R M G  +RPN  ++  VL  CS L +L++G+ VH  + K  +  
Sbjct: 254 --VRNEETNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIEL 311

Query: 206 DTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMK 265
           +      LI+MY +CG +++A  +F E++ +DV+T+N MISG + +GK  +A+ LF  M 
Sbjct: 312 NLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMV 371

Query: 266 DEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKL 325
              ++P ++TFV +L AC+H GLVD G + F SM  DY +  + +HY CMVDLLGR G+L
Sbjct: 372 GRRLRPTNVTFVGVLNACSHGGLVDFGFEIFHSMARDYRVEPQIEHYGCMVDLLGRVGRL 431

Query: 326 VEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANI 385
            EA DLI+ M   P   + GTLLSAC++HK L+L E  A  L +   A+ +G YV L+++
Sbjct: 432 EEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVAKELEDRGQAD-SGTYVLLSHV 490

Query: 386 YAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKEL 445
           YA+  KW + A++R  MKE  + K PG S IEV   +HEF  GD  HP+   I+EKL+EL
Sbjct: 491 YASSGKWKEAAQVRAKMKEAGMQKEPGCSSIEVNNEIHEFLLGDLRHPQKERIYEKLEEL 550

Query: 446 EKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVC 505
            + ++L GY P+ E  L  + +  KE  L  HSE+LAI +GLI     T IRV KNLRVC
Sbjct: 551 NRLLRLEGYHPEKEVVLQDIEDGEKEWALAMHSERLAICYGLISTEPCTMIRVMKNLRVC 610

Query: 506 GDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
            DCH A K I+ I +R+I+VRD  RFH+F++G CSCGDYW
Sbjct: 611 YDCHSAIKLIAKITRRKIVVRDRNRFHYFENGACSCGDYW 650



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 72/296 (24%), Positives = 134/296 (45%), Gaps = 43/296 (14%)

Query: 113 ECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFG-YVENSWAEDGLKLLRMMIGLGIRPN 171
           +C  +D A  +F+     +V  +TA+I G++  G Y+E       ++L   M+   I P+
Sbjct: 93  KCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGNYLE------AIQLYSRMLHESILPD 146

Query: 172 ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFL 231
              ++S+L  C    +L+ G++VH    K     +      ++ +Y KCG+L DA ++F 
Sbjct: 147 NYLMASILKACGSQLALREGREVHSRALKLGFSSNRLVRLRIMELYGKCGELGDARRVFE 206

Query: 232 E------------------------------IQRKDVVTWNAMISGYAQHGKGEKALRLF 261
           E                              ++RKD V W AMI G+ ++ +  +AL  F
Sbjct: 207 EMPEDVVASTVMISSYSDQGLVEEAGAVFSRVRRKDTVCWTAMIDGFVRNEETNRALEAF 266

Query: 262 DKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGR 321
             M+ E ++P+  T V +L AC+  G +++G ++  S +  + I         ++++  R
Sbjct: 267 RGMQGENVRPNEFTIVCVLSACSQLGALEIG-RWVHSYMRKFEIELNLFVGNALINMYSR 325

Query: 322 AGKLVEAVDLIKKMPFKPQPAI-FGTLLSACRVH--KRLDLAEFAAMNLFNLNPAN 374
            G + EA  +  +M  K +  I + T++S   ++   R  +  F  M    L P N
Sbjct: 326 CGSIDEAQTVFDEM--KDRDVITYNTMISGLSMNGKSRQAIELFRVMVGRRLRPTN 379



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 91/356 (25%), Positives = 139/356 (39%), Gaps = 85/356 (23%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDD--VVAAFDFFQRLPIKDTASWNTMIS 78
           G+L DA+ +F+++P+ DVV+  +M+S     SD   V  A   F R+  KDT  W  MI 
Sbjct: 196 GELGDARRVFEEMPE-DVVASTVMISSY---SDQGLVEEAGAVFSRVRRKDTVCWTAMID 251

Query: 79  GFVQKKNMAKARDLFLAMP---------------------------------------EK 99
           GFV+ +   +A + F  M                                        E 
Sbjct: 252 GFVRNEETNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIEL 311

Query: 100 NSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKL 159
           N    +A+I+ Y  CG +D+A  +F     + V+ +  MISG        N  +   ++L
Sbjct: 312 NLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSM-----NGKSRQAIEL 366

Query: 160 LRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCK 219
            R+M+G  +RP   +   VL  CSH   +  G +    +F S + +D   + P I  Y  
Sbjct: 367 FRVMVGRRLRPTNVTFVGVLNACSHGGLVDFGFE----IFHS-MARDYR-VEPQIEHY-- 418

Query: 220 CGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVAL 279
                                   M+    + G+ E+A  L   MK   M PD I    L
Sbjct: 419 ----------------------GCMVDLLGRVGRLEEAYDLIRTMK---MTPDHIMLGTL 453

Query: 280 LLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335
           L AC     ++LG Q    +  D G  A    Y  +  +   +GK  EA  +  KM
Sbjct: 454 LSACKMHKNLELGEQVAKEL-EDRG-QADSGTYVLLSHVYASSGKWKEAAQVRAKM 507



 Score = 47.8 bits (112), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 31/143 (21%), Positives = 68/143 (47%), Gaps = 1/143 (0%)

Query: 194 VHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGK 253
           +H  + ++   +D   +  L+    KC  ++ A ++F      +V  + A+I G+   G 
Sbjct: 68  IHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGN 127

Query: 254 GEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYT 313
             +A++L+ +M  E + PD+    ++L AC     +  G +   S     G ++      
Sbjct: 128 YLEAIQLYSRMLHESILPDNYLMASILKACGSQLALREGRE-VHSRALKLGFSSNRLVRL 186

Query: 314 CMVDLLGRAGKLVEAVDLIKKMP 336
            +++L G+ G+L +A  + ++MP
Sbjct: 187 RIMELYGKCGELGDARRVFEEMP 209


>gi|356524120|ref|XP_003530680.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g40405-like [Glycine max]
          Length = 616

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 197/460 (42%), Positives = 279/460 (60%), Gaps = 6/460 (1%)

Query: 86  MAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKF 145
           ++   ++F    E + V+ +AM++   +CG +D A ++F   P +  V W AMI+GY + 
Sbjct: 163 LSSCHNVFDGAVEPDLVTQTAMLNACAKCGDIDFARKMFDEMPERDHVTWNAMIAGYAQC 222

Query: 146 GYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCK 205
           G      + + L +  +M   G++ N  S+  VL  C+HL  L  G+ VH  V +  +  
Sbjct: 223 GR-----SREALDVFHLMQMEGVKLNEVSMVLVLSACTHLQVLDHGRWVHAYVERYKVRM 277

Query: 206 DTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMK 265
             T  T L+ MY KCG+++ A ++F  ++ ++V TW++ I G A +G GE++L LF+ MK
Sbjct: 278 TVTLGTALVDMYAKCGNVDRAMQVFWGMKERNVYTWSSAIGGLAMNGFGEESLDLFNDMK 337

Query: 266 DEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKL 325
            EG++P+ ITF+++L  C+  GLV+ G ++FDSM N YGI  + +HY  MVD+ GRAG+L
Sbjct: 338 REGVQPNGITFISVLKGCSVVGLVEEGRKHFDSMRNVYGIGPQLEHYGLMVDMYGRAGRL 397

Query: 326 VEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANI 385
            EA++ I  MP +P    +  LL ACR++K  +L E A   +  L   N  G YV L+NI
Sbjct: 398 KEALNFINSMPMRPHVGAWSALLHACRMYKNKELGEIAQRKIVELEDKND-GAYVLLSNI 456

Query: 386 YAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKEL 445
           YA  K W+ V+ +R +MK   V K+PG S IEV   VHEF  GD+ HP    I  KL+E+
Sbjct: 457 YADYKNWESVSSLRQTMKAKGVKKLPGCSVIEVDGEVHEFIVGDKSHPRYDEIEMKLEEI 516

Query: 446 EKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVC 505
            K ++L+GYV +    L  + EE KE  L  HSEK+AIAFGLI +    PIRV  NLR+C
Sbjct: 517 SKCLRLSGYVANTNPVLFDIEEEEKEDALSKHSEKVAIAFGLISLKGVVPIRVVMNLRIC 576

Query: 506 GDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
            DCH   K IS I  REIIVRD  RFHHFKDG CSC DYW
Sbjct: 577 WDCHNVAKMISKIFNREIIVRDRNRFHHFKDGECSCKDYW 616



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 56/199 (28%), Positives = 92/199 (46%), Gaps = 32/199 (16%)

Query: 168 IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMY---------- 217
           + P+  + + ++  C+ L +   G  VH  V K     D    T L+ MY          
Sbjct: 108 LSPDNYTFTFLVRTCAQLQAHVTGLCVHGAVIKHGFELDPHVQTGLVFMYAELGCLSSCH 167

Query: 218 ---------------------CKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEK 256
                                 KCGD++ A K+F E+  +D VTWNAMI+GYAQ G+  +
Sbjct: 168 NVFDGAVEPDLVTQTAMLNACAKCGDIDFARKMFDEMPERDHVTWNAMIAGYAQCGRSRE 227

Query: 257 ALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMV 316
           AL +F  M+ EG+K + ++ V +L AC H  ++D G ++  + V  Y +       T +V
Sbjct: 228 ALDVFHLMQMEGVKLNEVSMVLVLSACTHLQVLDHG-RWVHAYVERYKVRMTVTLGTALV 286

Query: 317 DLLGRAGKLVEAVDLIKKM 335
           D+  + G +  A+ +   M
Sbjct: 287 DMYAKCGNVDRAMQVFWGM 305



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 72/297 (24%), Positives = 125/297 (42%), Gaps = 62/297 (20%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G L     +FD   +PD+V+   ML+       D+  A   F  +P +D  +WN MI+G+
Sbjct: 161 GCLSSCHNVFDGAVEPDLVTQTAMLNACA-KCGDIDFARKMFDEMPERDHVTWNAMIAGY 219

Query: 81  VQKKNMAKARDLFLAMPEK----NSVS------------------W-------------- 104
            Q     +A D+F  M  +    N VS                  W              
Sbjct: 220 AQCGRSREALDVFHLMQMEGVKLNEVSMVLVLSACTHLQVLDHGRWVHAYVERYKVRMTV 279

Query: 105 ---SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLR 161
              +A++  Y +CG +D+A+++F     ++V  W++ I      G   N + E+ L L  
Sbjct: 280 TLGTALVDMYAKCGNVDRAMQVFWGMKERNVYTWSSAIG-----GLAMNGFGEESLDLFN 334

Query: 162 MMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTP-------LI 214
            M   G++PN  +  SVL GCS +  ++ G++     F S   ++   + P       ++
Sbjct: 335 DMKREGVQPNGITFISVLKGCSVVGLVEEGRK----HFDS--MRNVYGIGPQLEHYGLMV 388

Query: 215 SMYCKCGDLEDACKLFLEI-QRKDVVTWNAMISG---YAQHGKGEKALRLFDKMKDE 267
            MY + G L++A      +  R  V  W+A++     Y     GE A R   +++D+
Sbjct: 389 DMYGRAGRLKEALNFINSMPMRPHVGAWSALLHACRMYKNKELGEIAQRKIVELEDK 445


>gi|302754942|ref|XP_002960895.1| hypothetical protein SELMODRAFT_74842 [Selaginella moellendorffii]
 gi|300171834|gb|EFJ38434.1| hypothetical protein SELMODRAFT_74842 [Selaginella moellendorffii]
          Length = 903

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 227/624 (36%), Positives = 325/624 (52%), Gaps = 91/624 (14%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIML-----------------S 46
           +  V+WN++L  +A Q G + +A  LF ++    +    + L                  
Sbjct: 289 RDVVSWNAMLGAYA-QHGHMSEAALLFARMLHEGISPSKVTLVNASTGCSSLRFGRMIHG 347

Query: 47  CIL---LNSDDVVA---------------AFDFFQRLPIKDTASWNTMISGFVQKKNMAK 88
           C L   L+ D V+                A   F+R+P  +  SWNTMI+G  QK  M +
Sbjct: 348 CALEKGLDRDIVLGNALLDMYTRCGSPEEARHLFKRIPC-NAVSWNTMIAGSSQKGQMKR 406

Query: 89  ARDLFLAM----------------------PEK---------------------NSVSWS 105
           A +LF  M                      PE+                          +
Sbjct: 407 AVELFQRMQLEGMAPVRATYLNLLEAVASNPEEARAMAEGRKLHSRIVSCGYASEPAIGT 466

Query: 106 AMISGYIECGQLDKAVELFKVAPVKS---VVAWTAMISGYMKFGYVENSWAEDGLKLLRM 162
           A++  Y  CG +D+A   F+   ++    VV+W A+IS   + G+      +  L   R 
Sbjct: 467 AVVKMYASCGAIDEAAASFQRGAMEDRHDVVSWNAIISSLSQHGH-----GKRALGFFRR 521

Query: 163 MIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGD 222
           M   G+ PN  +  +VL  C+  ++L  G+ VH  +  S +  +    T L SMY +CG 
Sbjct: 522 MDLHGVAPNQITCVAVLDACAGAAALTEGEIVHDHLRHSGMESNLFVATALASMYGRCGS 581

Query: 223 LEDACKLFLEIQ-RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLL 281
           LE A ++F ++   +DVV +NAMI+ Y+Q+G   +AL+LF +M+ EG +PD  +FV++L 
Sbjct: 582 LESAREIFEKVAVERDVVIFNAMIAAYSQNGLAGEALKLFWRMQQEGSRPDEQSFVSVLS 641

Query: 282 ACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQP 341
           AC+H GL D G + F SM   YGIA   DHY C VD+LGRAG L +A +LI+ M  KP  
Sbjct: 642 ACSHGGLADEGWEIFRSMRQSYGIAPSEDHYACAVDVLGRAGWLADAEELIRCMDVKPTV 701

Query: 342 AIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLS 401
            ++ TLL ACR ++ +D    A   +  L+P + +  YV L+NI A   KWD+ A +R  
Sbjct: 702 LVWKTLLGACRKYRDVDRGRLANSMVRELDPGDESA-YVVLSNILAGAGKWDEAAEVRTE 760

Query: 402 MKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFA 461
           M+   + K  G SWIE+ + VHEF +GDR HP    I+ +L+ L   ++  GYVPD    
Sbjct: 761 MESRGLRKEAGKSWIEIKSRVHEFVAGDRSHPRSEEIYRELERLHAEIREIGYVPDTRLV 820

Query: 462 LHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKR 521
           L  V E  KE+LL  HSE+LAIA G++     T +RV KNLRVC DCH ATK+IS I  +
Sbjct: 821 LRKVDEAEKERLLCQHSERLAIALGVMSSSTDT-VRVMKNLRVCEDCHNATKFISKIVNK 879

Query: 522 EIIVRDTTRFHHFKDGTCSCGDYW 545
           EI+VRDT RFHHF DG+CSCGDYW
Sbjct: 880 EIVVRDTHRFHHFVDGSCSCGDYW 903



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 96/360 (26%), Positives = 172/360 (47%), Gaps = 18/360 (5%)

Query: 2   NVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDF 61
            ++ T+  ++ LA    + G L  A+E+FD+  + DVVS+N ML     +     AA  F
Sbjct: 255 GLEQTLVVSTALASAYARLGHLYQAKEVFDRAAERDVVSWNAMLGAYAQHGHMSEAALLF 314

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISGYIECGQL 117
            + L    + S  T+++      ++   R +     EK    + V  +A++  Y  CG  
Sbjct: 315 ARMLHEGISPSKVTLVNASTGCSSLRFGRMIHGCALEKGLDRDIVLGNALLDMYTRCGSP 374

Query: 118 DKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASS--- 174
           ++A  LFK  P  + V+W  MI+G  + G ++ +     ++L + M   G+ P  ++   
Sbjct: 375 EEARHLFKRIPCNA-VSWNTMIAGSSQKGQMKRA-----VELFQRMQLEGMAPVRATYLN 428

Query: 175 -LSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLE- 232
            L +V        ++  G+++H  +       +    T ++ MY  CG +++A   F   
Sbjct: 429 LLEAVASNPEEARAMAEGRKLHSRIVSCGYASEPAIGTAVVKMYASCGAIDEAAASFQRG 488

Query: 233 --IQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVD 290
               R DVV+WNA+IS  +QHG G++AL  F +M   G+ P+ IT VA+L AC  A  + 
Sbjct: 489 AMEDRHDVVSWNAIISSLSQHGHGKRALGFFRRMDLHGVAPNQITCVAVLDACAGAAALT 548

Query: 291 LGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSA 350
            G    D + +  G+ +     T +  + GR G L  A ++ +K+  +    IF  +++A
Sbjct: 549 EGEIVHDHLRHS-GMESNLFVATALASMYGRCGSLESAREIFEKVAVERDVVIFNAMIAA 607



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 79/320 (24%), Positives = 138/320 (43%), Gaps = 60/320 (18%)

Query: 60  DFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISG----- 110
           + F RL ++D ASW T+I+ + +     +A  +F  M ++    ++V++ A++       
Sbjct: 83  EVFSRLEVRDEASWTTIITAYTEHGQAKRAIGMFHRMQQEGVRCDAVTFLAVLKACARLG 142

Query: 111 ------------------------------YIECGQLDKAVELFKVAPVKSVVAWTAMIS 140
                                         Y  CG +  A+ LF+    + +V+W A I+
Sbjct: 143 DLSQGRSIHAWIVESGLKGKSVLANLLLHIYGSCGCVASAMLLFEKME-RDLVSWNAAIA 201

Query: 141 GYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK 200
              + G +  +     L+L + M   G+RP   +L   L  C+   +++  + +H +V +
Sbjct: 202 ANAQSGDLGIA-----LELFQRMQLEGVRPARITLVIALTVCA---TIRQAQAIHFIVRE 253

Query: 201 SPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRL 260
           S L +     T L S Y + G L  A ++F     +DVV+WNAM+  YAQHG   +A  L
Sbjct: 254 SGLEQTLVVSTALASAYARLGHLYQAKEVFDRAAERDVVSWNAMLGAYAQHGHMSEAALL 313

Query: 261 FDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDH----YTCMV 316
           F +M  EG+ P  +T V     C+           F  M++   +    D        ++
Sbjct: 314 FARMLHEGISPSKVTLVNASTGCSSL--------RFGRMIHGCALEKGLDRDIVLGNALL 365

Query: 317 DLLGRAGKLVEAVDLIKKMP 336
           D+  R G   EA  L K++P
Sbjct: 366 DMYTRCGSPEEARHLFKRIP 385



 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 89/173 (51%), Gaps = 6/173 (3%)

Query: 111 YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRP 170
           Y++C  L    E+F    V+   +WT +I+ Y + G      A+  + +   M   G+R 
Sbjct: 72  YLKCESLGDVEEVFSRLEVRDEASWTTIITAYTEHGQ-----AKRAIGMFHRMQQEGVRC 126

Query: 171 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 230
           +A +  +VL  C+ L  L  G+ +H  + +S L   +     L+ +Y  CG +  A  LF
Sbjct: 127 DAVTFLAVLKACARLGDLSQGRSIHAWIVESGLKGKSVLANLLLHIYGSCGCVASAMLLF 186

Query: 231 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC 283
            +++R D+V+WNA I+  AQ G    AL LF +M+ EG++P  IT V  L  C
Sbjct: 187 EKMER-DLVSWNAAIAANAQSGDLGIALELFQRMQLEGVRPARITLVIALTVC 238



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 81/148 (54%), Gaps = 3/148 (2%)

Query: 188 LQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISG 247
           L  G+++H  +    L ++      L+ +Y KC  L D  ++F  ++ +D  +W  +I+ 
Sbjct: 45  LSQGRRIHARIVSLGLEEELG--NHLLRLYLKCESLGDVEEVFSRLEVRDEASWTTIITA 102

Query: 248 YAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAA 307
           Y +HG+ ++A+ +F +M+ EG++ D++TF+A+L AC   G +  G +   + + + G+  
Sbjct: 103 YTEHGQAKRAIGMFHRMQQEGVRCDAVTFLAVLKACARLGDLSQG-RSIHAWIVESGLKG 161

Query: 308 KPDHYTCMVDLLGRAGKLVEAVDLIKKM 335
           K      ++ + G  G +  A+ L +KM
Sbjct: 162 KSVLANLLLHIYGSCGCVASAMLLFEKM 189


>gi|302767396|ref|XP_002967118.1| hypothetical protein SELMODRAFT_87370 [Selaginella moellendorffii]
 gi|300165109|gb|EFJ31717.1| hypothetical protein SELMODRAFT_87370 [Selaginella moellendorffii]
          Length = 903

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 229/623 (36%), Positives = 321/623 (51%), Gaps = 89/623 (14%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDK-----IPQPDVVSYNIMLSCILLN------- 51
           +  V+WN++L  +A Q G + +A  LF +     IP   V   N    C  L        
Sbjct: 289 RDVVSWNAMLGAYA-QHGHMSEAALLFARMLHEGIPPSKVTLVNASTGCSSLRFGRMIHA 347

Query: 52  -------SDDVV---AAFDFFQRLPIKDTA------------SWNTMISGFVQKKNMAKA 89
                    D+V   A  D + R    + A            SWNTMI+G  QK  M +A
Sbjct: 348 CALEKGLDRDIVLGNALLDMYTRCGSPEEARHLFEGIPGNAVSWNTMIAGSSQKGQMKRA 407

Query: 90  RDLFLAM----------------------PEK---------------------NSVSWSA 106
            +LF  M                      PE+                          +A
Sbjct: 408 LELFQRMQLEGMAPVRATYLNLLEAVASNPEEARAMAEGRKLHSRIVSCGYASEPAIGTA 467

Query: 107 MISGYIECGQLDKAVELFKVAPVKS---VVAWTAMISGYMKFGYVENSWAEDGLKLLRMM 163
           ++  Y  CG +D+A   F+   ++    VV+W A+IS   + G+      +  L   R M
Sbjct: 468 VVKMYASCGAIDEAAASFQRGAMEDRHDVVSWNAIISSLSQHGH-----GKRALGFFRRM 522

Query: 164 IGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDL 223
              G+ PN  +  +VL  C+  ++L  G  VH  +  S +  +    T L SMY +CG L
Sbjct: 523 DLHGVAPNQITCVAVLDACAGAAALTEGVIVHDHLRHSGMESNVFVATALASMYGRCGSL 582

Query: 224 EDACKLFLEIQ-RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA 282
           E A ++F ++   +DVV +NAMI+ Y+Q+G   +AL+LF +M+ EG +PD  +FV++L A
Sbjct: 583 ESAREIFEKVAVERDVVIFNAMIAAYSQNGLAGEALKLFWRMQQEGSRPDEQSFVSVLSA 642

Query: 283 CNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPA 342
           C+H GL D G + F SM   YGIA   DHY C VD+LGRAG L +A +LI+ M  KP   
Sbjct: 643 CSHGGLADEGWEIFRSMRQSYGIAPSEDHYACAVDVLGRAGWLADAEELIRCMDVKPTVL 702

Query: 343 IFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSM 402
           ++ TLL ACR ++ +D    A   +  L+P + +  YV L+NI A   KWD+ A +R  M
Sbjct: 703 VWKTLLGACRKYRDVDRGRLANSMVRELDPGDESA-YVVLSNILAGAGKWDEAAEVRTEM 761

Query: 403 KENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFAL 462
           +   + K  G SWIE+ + VHEF +GDR HP    I+ +L+ L   ++  GYVPD    L
Sbjct: 762 ESRGLRKQAGKSWIEIKSRVHEFVAGDRSHPRSEEIYRELERLHAEIREIGYVPDTRLVL 821

Query: 463 HAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKRE 522
             V E  KE+LL  HSE+LAIA G++     T +RV KNLRVC DCH ATK+IS I  +E
Sbjct: 822 RKVDEAEKERLLCQHSERLAIALGVMSSSTDT-VRVMKNLRVCEDCHNATKFISKIVNKE 880

Query: 523 IIVRDTTRFHHFKDGTCSCGDYW 545
           I+VRDT RFHHF DG+CSCGDYW
Sbjct: 881 IVVRDTHRFHHFVDGSCSCGDYW 903



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 96/360 (26%), Positives = 172/360 (47%), Gaps = 18/360 (5%)

Query: 2   NVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDF 61
            ++ T+  ++ LA    + G L  A+E+FD+  + DVVS+N ML     +     AA  F
Sbjct: 255 GLEQTLVVSTALASAYARLGHLDQAKEVFDRAAERDVVSWNAMLGAYAQHGHMSEAALLF 314

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISGYIECGQL 117
            + L      S  T+++      ++   R +     EK    + V  +A++  Y  CG  
Sbjct: 315 ARMLHEGIPPSKVTLVNASTGCSSLRFGRMIHACALEKGLDRDIVLGNALLDMYTRCGSP 374

Query: 118 DKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASS--- 174
           ++A  LF+  P  + V+W  MI+G  + G ++ +     L+L + M   G+ P  ++   
Sbjct: 375 EEARHLFEGIP-GNAVSWNTMIAGSSQKGQMKRA-----LELFQRMQLEGMAPVRATYLN 428

Query: 175 -LSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLE- 232
            L +V        ++  G+++H  +       +    T ++ MY  CG +++A   F   
Sbjct: 429 LLEAVASNPEEARAMAEGRKLHSRIVSCGYASEPAIGTAVVKMYASCGAIDEAAASFQRG 488

Query: 233 --IQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVD 290
               R DVV+WNA+IS  +QHG G++AL  F +M   G+ P+ IT VA+L AC  A  + 
Sbjct: 489 AMEDRHDVVSWNAIISSLSQHGHGKRALGFFRRMDLHGVAPNQITCVAVLDACAGAAALT 548

Query: 291 LGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSA 350
            G+   D + +  G+ +     T +  + GR G L  A ++ +K+  +    IF  +++A
Sbjct: 549 EGVIVHDHLRHS-GMESNVFVATALASMYGRCGSLESAREIFEKVAVERDVVIFNAMIAA 607



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 102/365 (27%), Positives = 178/365 (48%), Gaps = 25/365 (6%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWN-TMISG 79
           G +  A  LF+++ + D+VS+N  ++     S D+  A + FQR+ ++       T++  
Sbjct: 177 GCVASAMLLFERMER-DLVSWNAAIAANA-QSGDLDMALELFQRMQLEGVRPARITLVIT 234

Query: 80  FVQKKNMAKARDLFLAMPE----KNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAW 135
                 + +AR +   + E    +  V  +A+ S Y   G LD+A E+F  A  + VV+W
Sbjct: 235 LSVCAKIRQARAIHSIVRESGLEQTLVVSTALASAYARLGHLDQAKEVFDRAAERDVVSW 294

Query: 136 TAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVH 195
            AM+  Y + G++    +E  L   RM+   GI P+  +L +   GCS   SL+ G+ +H
Sbjct: 295 NAMLGAYAQHGHM----SEAALLFARML-HEGIPPSKVTLVNASTGCS---SLRFGRMIH 346

Query: 196 QLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGE 255
               +  L +D      L+ MY +CG  E+A  LF  I   + V+WN MI+G +Q G+ +
Sbjct: 347 ACALEKGLDRDIVLGNALLDMYTRCGSPEEARHLFEGIP-GNAVSWNTMIAGSSQKGQMK 405

Query: 256 KALRLFDKMKDEGMKPDSITFVALLLAC----NHAGLVDLGIQYFDSMVNDYGIAAKPDH 311
           +AL LF +M+ EGM P   T++ LL A       A  +  G +    +V+  G A++P  
Sbjct: 406 RALELFQRMQLEGMAPVRATYLNLLEAVASNPEEARAMAEGRKLHSRIVS-CGYASEPAI 464

Query: 312 YTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAI--FGTLLSACRV--HKRLDLAEFAAMNL 367
            T +V +    G + EA    ++   + +  +  +  ++S+     H +  L  F  M+L
Sbjct: 465 GTAVVKMYASCGAIDEAAASFQRGAMEDRHDVVSWNAIISSLSQHGHGKRALGFFRRMDL 524

Query: 368 FNLNP 372
             + P
Sbjct: 525 HGVAP 529



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 81/355 (22%), Positives = 153/355 (43%), Gaps = 74/355 (20%)

Query: 60  DFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISG----- 110
           + F RL ++D ASW T+I+ + +     +A  +F  M ++    ++V++ A++       
Sbjct: 83  EVFSRLEVRDEASWTTIITAYTEHGQAKRAIWMFHRMQQEGVRCDAVTFLAVLKACARLG 142

Query: 111 ------------------------------YIECGQLDKAVELFKVAPVKSVVAWTAMIS 140
                                         Y  CG +  A+ LF+    + +V+W A I+
Sbjct: 143 DLSQGRSIHAWIVESGLEGKSVLANLLLHIYGSCGCVASAMLLFERME-RDLVSWNAAIA 201

Query: 141 GYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK 200
              + G ++ +     L+L + M   G+RP   +L   L  C+    ++  + +H +V +
Sbjct: 202 ANAQSGDLDMA-----LELFQRMQLEGVRPARITLVITLSVCA---KIRQARAIHSIVRE 253

Query: 201 SPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRL 260
           S L +     T L S Y + G L+ A ++F     +DVV+WNAM+  YAQHG   +A  L
Sbjct: 254 SGLEQTLVVSTALASAYARLGHLDQAKEVFDRAAERDVVSWNAMLGAYAQHGHMSEAALL 313

Query: 261 FDKMKDEGMKPDSITFVALLLACN--------HAGLVDLG----IQYFDSMVNDYGIAAK 308
           F +M  EG+ P  +T V     C+        HA  ++ G    I   +++++ Y     
Sbjct: 314 FARMLHEGIPPSKVTLVNASTGCSSLRFGRMIHACALEKGLDRDIVLGNALLDMYTRCGS 373

Query: 309 PDH--------------YTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLS 349
           P+               +  M+    + G++  A++L ++M  +    +  T L+
Sbjct: 374 PEEARHLFEGIPGNAVSWNTMIAGSSQKGQMKRALELFQRMQLEGMAPVRATYLN 428



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 74/327 (22%), Positives = 133/327 (40%), Gaps = 79/327 (24%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVV 133
           N ++  +++ +++    ++F  +  ++  SW+ +I+ Y E GQ  +A+ +F         
Sbjct: 66  NHLLRLYLKCESLGDVEEVFSRLEVRDEASWTTIITAYTEHGQAKRAIWMFH-------- 117

Query: 134 AWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ 193
                                        M   G+R +A +  +VL  C+ L  L  G+ 
Sbjct: 118 ----------------------------RMQQEGVRCDAVTFLAVLKACARLGDLSQGRS 149

Query: 194 VHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGK 253
           +H  + +S L   +     L+ +Y  CG +  A  LF  ++R D+V+WNA I+  AQ G 
Sbjct: 150 IHAWIVESGLEGKSVLANLLLHIYGSCGCVASAMLLFERMER-DLVSWNAAIAANAQSGD 208

Query: 254 GEKALRLFDKMKDEGMKPDSITFVALLLACN--------HAGLVDLGIQ----------- 294
            + AL LF +M+ EG++P  IT V  L  C         H+ + + G++           
Sbjct: 209 LDMALELFQRMQLEGVRPARITLVITLSVCAKIRQARAIHSIVRESGLEQTLVVSTALAS 268

Query: 295 ------YFDSMVNDYGIAAKPD--HYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAI--- 343
                 + D     +  AA+ D   +  M+    + G + EA  L  +M  +  P     
Sbjct: 269 AYARLGHLDQAKEVFDRAAERDVVSWNAMLGAYAQHGHMSEAALLFARMLHEGIPPSKVT 328

Query: 344 ------------FGTLLSACRVHKRLD 358
                       FG ++ AC + K LD
Sbjct: 329 LVNASTGCSSLRFGRMIHACALEKGLD 355



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/148 (25%), Positives = 81/148 (54%), Gaps = 3/148 (2%)

Query: 188 LQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISG 247
           L  G+++H  +    L ++      L+ +Y KC  L D  ++F  ++ +D  +W  +I+ 
Sbjct: 45  LSQGRRIHARIVSLGLEEELG--NHLLRLYLKCESLGDVEEVFSRLEVRDEASWTTIITA 102

Query: 248 YAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAA 307
           Y +HG+ ++A+ +F +M+ EG++ D++TF+A+L AC   G +  G +   + + + G+  
Sbjct: 103 YTEHGQAKRAIWMFHRMQQEGVRCDAVTFLAVLKACARLGDLSQG-RSIHAWIVESGLEG 161

Query: 308 KPDHYTCMVDLLGRAGKLVEAVDLIKKM 335
           K      ++ + G  G +  A+ L ++M
Sbjct: 162 KSVLANLLLHIYGSCGCVASAMLLFERM 189


>gi|297816218|ref|XP_002875992.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321830|gb|EFH52251.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 721

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 221/531 (41%), Positives = 298/531 (56%), Gaps = 51/531 (9%)

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP----------------------- 97
           F+    ++D  SWN+MI  + Q K  AKA  L+  M                        
Sbjct: 196 FYGMDGLRDEVSWNSMIVAYGQHKEGAKALALYKEMIFKGFKIDMFTLASVLNALTSLDH 255

Query: 98  ----------------EKNSVSWSAMISGYIECGQLD---KAVELFKVAPVKSVVAWTAM 138
                            +NS   S +I  Y +CG  D    + ++F+      +V W  M
Sbjct: 256 LIGGRQFHGKLIKAGFHQNSHVGSGLIDFYSKCGGRDGMSDSEKVFQEILSPDLVLWNTM 315

Query: 139 ISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLV 198
           ISGY     +    +E+ +K  R M  +G RP+  S   V   CS+LSS   GKQ+H L 
Sbjct: 316 ISGYS----MNEEHSEEAVKSFRQMQRIGHRPDDCSFVCVTSACSNLSSPSQGKQIHGLA 371

Query: 199 FKSPLCKDTTALT-PLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKA 257
            KS +  +  ++   LIS+Y K G+L DA ++F  +   + V++N MI GYAQHG G +A
Sbjct: 372 IKSNIPSNRISVNNALISLYYKSGNLLDARRVFDRMPELNAVSFNCMIKGYAQHGHGTEA 431

Query: 258 LRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVD 317
           LRL+ +M D G+ P++ITFVA+L AC H G VD G +YF++M   + I  + +HY+CM+D
Sbjct: 432 LRLYQRMLDSGIAPNNITFVAILSACAHCGKVDEGQKYFNTMKETFKIEPEAEHYSCMID 491

Query: 318 LLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAG 377
           LLGRAGKL EA   I  MP+KP    +  LL ACR HK + LAE AA  L  + P  AA 
Sbjct: 492 LLGRAGKLEEAERFIDAMPYKPGSVAWAALLGACRKHKNMALAERAAKELMVMQPL-AAT 550

Query: 378 CYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVS 437
            YV LAN+YA   KW+++A +R SM+   + K PG SWIEV    H F + D  HP +  
Sbjct: 551 PYVMLANMYADAGKWEEMASVRKSMRGKRIRKKPGCSWIEVKKKKHVFVAEDWSHPMIRE 610

Query: 438 IHEKLKELEKRMKLAGYVPDLEFAL---HAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGT 494
           ++E L+E+ K+MK  GYV D ++A+      GE  +E  L  HSEKLA+AFGL+    G 
Sbjct: 611 VNEYLEEMMKKMKKVGYVMDKKWAMVKEDEAGEGEEEMRLGHHSEKLAVAFGLMSTRDGE 670

Query: 495 PIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
            I V KNLR+CGDCH A K++SA+  REIIVRD  RFH FKDG CSCGDYW
Sbjct: 671 EIVVVKNLRICGDCHNAIKFMSAVAGREIIVRDNLRFHCFKDGKCSCGDYW 721



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 94/340 (27%), Positives = 172/340 (50%), Gaps = 18/340 (5%)

Query: 8   NWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPI 67
           ++N ++  +AK   K+  A++LFD+ PQPD VSYN ++S    ++ + VAA   F+R+  
Sbjct: 76  SYNVIVKAYAKD-SKIHIARQLFDENPQPDTVSYNTLISG-YADARETVAAMVLFKRMRE 133

Query: 68  ----KDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSW--SAMISGYIECGQLDKAV 121
                D  + + +I+    + ++ K    F      +S S   +A ++ Y + G L +AV
Sbjct: 134 LGFEVDGFTLSGLIAACCDRVDLIKQLHCFAVSGGFDSYSSVNNAFVTYYSKGGLLREAV 193

Query: 122 ELF-KVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLL 180
            +F  +  ++  V+W +MI       Y ++      L L + MI  G + +  +L+SVL 
Sbjct: 194 SVFYGMDGLRDEVSWNSMI-----VAYGQHKEGAKALALYKEMIFKGFKIDMFTLASVLN 248

Query: 181 GCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCG---DLEDACKLFLEIQRKD 237
             + L  L  G+Q H  + K+   +++   + LI  Y KCG    + D+ K+F EI   D
Sbjct: 249 ALTSLDHLIGGRQFHGKLIKAGFHQNSHVGSGLIDFYSKCGGRDGMSDSEKVFQEILSPD 308

Query: 238 VVTWNAMISGYAQHGK-GEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYF 296
           +V WN MISGY+ + +  E+A++ F +M+  G +PD  +FV +  AC++      G Q  
Sbjct: 309 LVLWNTMISGYSMNEEHSEEAVKSFRQMQRIGHRPDDCSFVCVTSACSNLSSPSQGKQIH 368

Query: 297 DSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 336
              +     + +      ++ L  ++G L++A  +  +MP
Sbjct: 369 GLAIKSNIPSNRISVNNALISLYYKSGNLLDARRVFDRMP 408



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 54/198 (27%), Positives = 93/198 (46%), Gaps = 8/198 (4%)

Query: 86  MAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKF 145
           ++ AR  F +  E N  S++ ++  Y +  ++  A +LF   P    V++  +ISGY   
Sbjct: 59  LSYARAAFDSTEEPNVFSYNVIVKAYAKDSKIHIARQLFDENPQPDTVSYNTLISGY--- 115

Query: 146 GYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCK 205
              +       + L + M  LG   +  +LS ++  C     + L KQ+H          
Sbjct: 116 --ADARETVAAMVLFKRMRELGFEVDGFTLSGLIAAC--CDRVDLIKQLHCFAVSGGFDS 171

Query: 206 DTTALTPLISMYCKCGDLEDACKLFLEIQR-KDVVTWNAMISGYAQHGKGEKALRLFDKM 264
            ++     ++ Y K G L +A  +F  +   +D V+WN+MI  Y QH +G KAL L+ +M
Sbjct: 172 YSSVNNAFVTYYSKGGLLREAVSVFYGMDGLRDEVSWNSMIVAYGQHKEGAKALALYKEM 231

Query: 265 KDEGMKPDSITFVALLLA 282
             +G K D  T  ++L A
Sbjct: 232 IFKGFKIDMFTLASVLNA 249



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 79/359 (22%), Positives = 131/359 (36%), Gaps = 111/359 (30%)

Query: 20  RGKLKDAQELFDKIPQPDVVSYNIMLSCILLN---SDDVVAAFDFFQRL----------- 65
           R  + D++++F +I  PD+V +N M+S   +N   S++ V +F   QR+           
Sbjct: 291 RDGMSDSEKVFQEILSPDLVLWNTMISGYSMNEEHSEEAVKSFRQMQRIGHRPDDCSFVC 350

Query: 66  --------------------------PIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK 99
                                     P    +  N +IS + +  N+  AR +F  MPE 
Sbjct: 351 VTSACSNLSSPSQGKQIHGLAIKSNIPSNRISVNNALISLYYKSGNLLDARRVFDRMPEL 410

Query: 100 NSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKL 159
           N+VS++ MI GY + G                                       + L+L
Sbjct: 411 NAVSFNCMIKGYAQHGH------------------------------------GTEALRL 434

Query: 160 LRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCK 219
            + M+  GI PN  +  ++L  C+H   +  G++    +      K+T  + P    Y  
Sbjct: 435 YQRMLDSGIAPNNITFVAILSACAHCGKVDEGQKYFNTM------KETFKIEPEAEHY-- 486

Query: 220 CGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVAL 279
                                 + MI    + GK E+A R  D M     KP S+ + AL
Sbjct: 487 ----------------------SCMIDLLGRAGKLEEAERFIDAMP---YKPGSVAWAAL 521

Query: 280 LLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 338
           L AC     + L  +    ++    +AA P  Y  + ++   AGK  E   + K M  K
Sbjct: 522 LGACRKHKNMALAERAAKELMVMQPLAATP--YVMLANMYADAGKWEEMASVRKSMRGK 578



 Score = 52.0 bits (123), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 53/217 (24%), Positives = 85/217 (39%), Gaps = 42/217 (19%)

Query: 174 SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCG------------ 221
           S   +LL       L  GK +H L  KS +   T      +++Y KCG            
Sbjct: 10  SFRDLLLKSVAERDLFTGKSLHALYVKSIVASSTYLSNHFVNLYSKCGCLSYARAAFDST 69

Query: 222 -------------------DLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFD 262
                               +  A +LF E  + D V++N +ISGYA   +   A+ LF 
Sbjct: 70  EEPNVFSYNVIVKAYAKDSKIHIARQLFDENPQPDTVSYNTLISGYADARETVAAMVLFK 129

Query: 263 KMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCM----VDL 318
           +M++ G + D  T   L+ AC     VDL  Q     ++ + ++   D Y+ +    V  
Sbjct: 130 RMRELGFEVDGFTLSGLIAAC--CDRVDLIKQ-----LHCFAVSGGFDSYSSVNNAFVTY 182

Query: 319 LGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHK 355
             + G L EAV +   M        + +++ A   HK
Sbjct: 183 YSKGGLLREAVSVFYGMDGLRDEVSWNSMIVAYGQHK 219


>gi|356568485|ref|XP_003552441.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At3g23330-like [Glycine max]
          Length = 1011

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 212/591 (35%), Positives = 324/591 (54%), Gaps = 63/591 (10%)

Query: 10   NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
            NS+L  + K +   + A+ LF+ + + DVVS+NIM+    L + DV  + D F+RLP KD
Sbjct: 429  NSILDLYLKCK-VFEYAERLFELMNEGDVVSWNIMIGA-YLRAGDVEKSLDMFRRLPYKD 486

Query: 70   TASWNTMISGFVQKKNMAKARDLFLAM----PEKNSVSWS-------------------- 105
              SWNT++ G +Q      A +    M     E ++V++S                    
Sbjct: 487  VVSWNTIVDGLLQCGYERHALEQLYCMVECGTEFSAVTFSIALILASSLSHVELGRQLHG 546

Query: 106  ---------------AMISGYIECGQLDKAVELFKVAPVK----------------SVVA 134
                           +++  Y +CG++DKA  + +  P+                  +V+
Sbjct: 547  MVLKFGFDSDGFIRSSLVEMYCKCGRMDKASIILRDVPLDVLRKGNARVSYKEPKAGIVS 606

Query: 135  WTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQV 194
            W +M+SGY     V N   EDGLK  R+M+   +  +  ++++++  C++   L+ G+ V
Sbjct: 607  WGSMVSGY-----VWNGKYEDGLKTFRLMVRELVVVDIRTVTTIISACANAGILEFGRHV 661

Query: 195  HQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKG 254
            H  V K     D    + LI MY K G L+DA  +F +    ++V W +MISGYA HG+G
Sbjct: 662  HAYVQKIGHRIDAYVGSSLIDMYSKSGSLDDAWMVFRQSNEPNIVMWTSMISGYALHGQG 721

Query: 255  EKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTC 314
              A+ LF++M ++G+ P+ +TF+ +L AC+HAGL++ G +YF  M + Y I    +H T 
Sbjct: 722  MHAIGLFEEMLNQGIIPNEVTFLGVLNACSHAGLIEEGCRYFRMMKDAYCINPGVEHCTS 781

Query: 315  MVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPAN 374
            MVDL GRAG L +  + I K       +++ + LS+CR+HK +++ ++ +  L  + P++
Sbjct: 782  MVDLYGRAGHLTKTKNFIFKNGISHLTSVWKSFLSSCRLHKNVEMGKWVSEMLLQVAPSD 841

Query: 375  AAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPE 434
              G YV L+N+ A+  +WD+ AR+R  M +  V K PG SWI++   +H F  GDR HP+
Sbjct: 842  P-GAYVLLSNMCASNHRWDEAARVRSLMHQRGVKKQPGQSWIQLKDQIHTFVMGDRSHPQ 900

Query: 435  LVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGT 494
               I+  L  L  R+K  GY  D++  +  V EE  E L+  HSEKLA+ FG+I     T
Sbjct: 901  DDEIYSYLDILIGRLKEIGYSFDVKLVMQDVEEEQGEVLISHHSEKLAVVFGIINTANRT 960

Query: 495  PIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
            PIR+ KNLR+C DCH   KY S +  REIIVRD  RFHHFK G+CSCGDYW
Sbjct: 961  PIRIIKNLRICTDCHNFIKYASQLLDREIIVRDIHRFHHFKHGSCSCGDYW 1011



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 103/405 (25%), Positives = 193/405 (47%), Gaps = 70/405 (17%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCIL-LNSDDVVAAFDFFQRLPIK 68
           N +L  +AK    +  AQ+LFD+IPQ +  ++ I++S      S ++V  F+ F+ +  K
Sbjct: 328 NHLLTLYAKSN-NMAHAQKLFDEIPQRNTQTWTILISGFARAGSSEMV--FNLFREMQAK 384

Query: 69  ---------------------------------------DTASWNTMISGFVQKKNMAKA 89
                                                  D    N+++  +++ K    A
Sbjct: 385 GACPNQYTLSSVLKCCSLDNNLQLGKGVHAWMLRNGIDVDVVLGNSILDLYLKCKVFEYA 444

Query: 90  RDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVE 149
             LF  M E + VSW+ MI  Y+  G ++K++++F+  P K VV+W  ++ G ++ GY  
Sbjct: 445 ERLFELMNEGDVVSWNIMIGAYLRAGDVEKSLDMFRRLPYKDVVSWNTIVDGLLQCGYER 504

Query: 150 NSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTA 209
           ++     L+ L  M+  G   +A + S  L+  S LS ++LG+Q+H +V K     D   
Sbjct: 505 HA-----LEQLYCMVECGTEFSAVTFSIALILASSLSHVELGRQLHGMVLKFGFDSDGFI 559

Query: 210 LTPLISMYCKCGDLEDACKLF----LEIQRK------------DVVTWNAMISGYAQHGK 253
            + L+ MYCKCG ++ A  +     L++ RK             +V+W +M+SGY  +GK
Sbjct: 560 RSSLVEMYCKCGRMDKASIILRDVPLDVLRKGNARVSYKEPKAGIVSWGSMVSGYVWNGK 619

Query: 254 GEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY- 312
            E  L+ F  M  E +  D  T   ++ AC +AG+++ G ++  + V    I  + D Y 
Sbjct: 620 YEDGLKTFRLMVRELVVVDIRTVTTIISACANAGILEFG-RHVHAYVQK--IGHRIDAYV 676

Query: 313 -TCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKR 356
            + ++D+  ++G L +A  ++ +   +P   ++ +++S   +H +
Sbjct: 677 GSSLIDMYSKSGSLDDAW-MVFRQSNEPNIVMWTSMISGYALHGQ 720



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/175 (24%), Positives = 80/175 (45%), Gaps = 30/175 (17%)

Query: 194 VHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGK 253
           +H L  K+   +       L+++Y K  ++  A KLF EI +++  TW  +ISG+A+ G 
Sbjct: 311 LHALYVKNGSLQTLNPANHLLTLYAKSNNMAHAQKLFDEIPQRNTQTWTILISGFARAGS 370

Query: 254 GEKALRLFDKMKDEGMKPDSITFVALLLACN-----------HAGLVDLGIQ-------- 294
            E    LF +M+ +G  P+  T  ++L  C+           HA ++  GI         
Sbjct: 371 SEMVFNLFREMQAKGACPNQYTLSSVLKCCSLDNNLQLGKGVHAWMLRNGIDVDVVLGNS 430

Query: 295 ----YFDSMVNDYG-----IAAKPD--HYTCMVDLLGRAGKLVEAVDLIKKMPFK 338
               Y    V +Y      +  + D   +  M+    RAG + +++D+ +++P+K
Sbjct: 431 ILDLYLKCKVFEYAERLFELMNEGDVVSWNIMIGAYLRAGDVEKSLDMFRRLPYK 485


>gi|297611064|ref|NP_001065554.2| Os11g0109600 [Oryza sativa Japonica Group]
 gi|255679703|dbj|BAF27399.2| Os11g0109600 [Oryza sativa Japonica Group]
          Length = 1124

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 211/544 (38%), Positives = 302/544 (55%), Gaps = 16/544 (2%)

Query: 10   NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSD---DVVAAFDFFQRLP 66
             S+L+ +AK  G L  AQ +FD++P P  V +  +++  +   D    V  A + F    
Sbjct: 589  TSLLSLYAKC-GLLHRAQRVFDEMPHPSTVPWTALITAYMDAGDLREAVHVARNAFANGM 647

Query: 67   IKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISG-----YIECGQLDKAV 121
              D+ +   +++   +  ++A    ++ A  E+  V+ S  ++      Y++CG++ KA 
Sbjct: 648  RPDSFTAVRVLTACARIADLATGETVWRAA-EQEGVAQSVFVATAAVDLYVKCGEMAKAR 706

Query: 122  ELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLG 181
            E+F     K  VAW AM+ GY   G+       + L L   M   G++P+  +++  L  
Sbjct: 707  EVFDKMRHKDAVAWGAMVGGYASNGH-----PREALDLFLAMQAEGMKPDCYAVAGALSA 761

Query: 182  CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTW 241
            C+ L +L LG+Q  ++V       +    T LI MY KCG   +A  +F ++++KD++ W
Sbjct: 762  CTRLGALDLGRQAIRMVDWDEFLDNPVLGTALIDMYAKCGSTVEAWVVFQQMRKKDIIVW 821

Query: 242  NAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN 301
            NAMI G    G  + A  L  +M+  G+K +  TF+ LL +C H GL+  G +YF +M  
Sbjct: 822  NAMILGLGMTGHEKIAFALVGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTK 881

Query: 302  DYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAE 361
             Y I+ + +HY CMVDLL RAG L EA  L+  MP      I G LL  C++H+  +LAE
Sbjct: 882  LYHISPRIEHYGCMVDLLSRAGLLQEAHQLVDDMPMPANAVILGALLGGCKIHRNTELAE 941

Query: 362  FAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTV 421
                 L  L P N+ G YV L+NIY+   +W+D A++RL MK   V K+P  SW+E    
Sbjct: 942  HVLKQLILLEPWNS-GNYVMLSNIYSNRGRWEDAAKLRLDMKAKGVEKVPACSWVEFEGK 1000

Query: 422  VHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKL 481
            VHEFR GD+ HP    I++KL EL   MK  GY P  E  +  V +E KE  L+ HSEKL
Sbjct: 1001 VHEFRVGDKSHPLSDQIYKKLDELGLEMKTMGYEPTTEVVMFDVEDEEKEHTLVHHSEKL 1060

Query: 482  AIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSC 541
            AIAF L+    G  IRV KNLRVC DCH A K +S I  REIIVRD  RFH F+DG+CSC
Sbjct: 1061 AIAFNLLITGPGETIRVTKNLRVCSDCHTAIKLVSRITHREIIVRDNNRFHCFRDGSCSC 1120

Query: 542  GDYW 545
             DYW
Sbjct: 1121 NDYW 1124



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 66/209 (31%), Positives = 96/209 (45%), Gaps = 9/209 (4%)

Query: 170 PNASSLSS--VLLGCSHLS-SLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 226
           PN S L+    L   S L   L+ G+Q+H    K P   +   LT L+S+Y KCG L  A
Sbjct: 545 PNPSHLTIPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLSLYAKCGLLHRA 604

Query: 227 CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHA 286
            ++F E+     V W A+I+ Y   G   +A+ +       GM+PDS T V +L AC  A
Sbjct: 605 QRVFDEMPHPSTVPWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTAC--A 662

Query: 287 GLVDLGI-QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFG 345
            + DL   +         G+A      T  VDL  + G++ +A ++  KM  K   A +G
Sbjct: 663 RIADLATGETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVA-WG 721

Query: 346 TLLS--ACRVHKRLDLAEFAAMNLFNLNP 372
            ++   A   H R  L  F AM    + P
Sbjct: 722 AMVGGYASNGHPREALDLFLAMQAEGMKP 750


>gi|222615375|gb|EEE51507.1| hypothetical protein OsJ_32672 [Oryza sativa Japonica Group]
          Length = 1100

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 211/544 (38%), Positives = 302/544 (55%), Gaps = 16/544 (2%)

Query: 10   NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSD---DVVAAFDFFQRLP 66
             S+L+ +AK  G L  AQ +FD++P P  V +  +++  +   D    V  A + F    
Sbjct: 565  TSLLSLYAKC-GLLHRAQRVFDEMPHPSTVPWTALITAYMDAGDLREAVHVARNAFANGM 623

Query: 67   IKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISG-----YIECGQLDKAV 121
              D+ +   +++   +  ++A    ++ A  E+  V+ S  ++      Y++CG++ KA 
Sbjct: 624  RPDSFTAVRVLTACARIADLATGETVWRAA-EQEGVAQSVFVATAAVDLYVKCGEMAKAR 682

Query: 122  ELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLG 181
            E+F     K  VAW AM+ GY   G+       + L L   M   G++P+  +++  L  
Sbjct: 683  EVFDKMRHKDAVAWGAMVGGYASNGH-----PREALDLFLAMQAEGMKPDCYAVAGALSA 737

Query: 182  CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTW 241
            C+ L +L LG+Q  ++V       +    T LI MY KCG   +A  +F ++++KD++ W
Sbjct: 738  CTRLGALDLGRQAIRMVDWDEFLDNPVLGTALIDMYAKCGSTVEAWVVFQQMRKKDIIVW 797

Query: 242  NAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN 301
            NAMI G    G  + A  L  +M+  G+K +  TF+ LL +C H GL+  G +YF +M  
Sbjct: 798  NAMILGLGMTGHEKIAFALVGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTK 857

Query: 302  DYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAE 361
             Y I+ + +HY CMVDLL RAG L EA  L+  MP      I G LL  C++H+  +LAE
Sbjct: 858  LYHISPRIEHYGCMVDLLSRAGLLQEAHQLVDDMPMPANAVILGALLGGCKIHRNTELAE 917

Query: 362  FAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTV 421
                 L  L P N+ G YV L+NIY+   +W+D A++RL MK   V K+P  SW+E    
Sbjct: 918  HVLKQLILLEPWNS-GNYVMLSNIYSNRGRWEDAAKLRLDMKAKGVEKVPACSWVEFEGK 976

Query: 422  VHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKL 481
            VHEFR GD+ HP    I++KL EL   MK  GY P  E  +  V +E KE  L+ HSEKL
Sbjct: 977  VHEFRVGDKSHPLSDQIYKKLDELGLEMKTMGYEPTTEVVMFDVEDEEKEHTLVHHSEKL 1036

Query: 482  AIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSC 541
            AIAF L+    G  IRV KNLRVC DCH A K +S I  REIIVRD  RFH F+DG+CSC
Sbjct: 1037 AIAFNLLITGPGETIRVTKNLRVCSDCHTAIKLVSRITHREIIVRDNNRFHCFRDGSCSC 1096

Query: 542  GDYW 545
             DYW
Sbjct: 1097 NDYW 1100



 Score = 78.6 bits (192), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 66/209 (31%), Positives = 96/209 (45%), Gaps = 9/209 (4%)

Query: 170 PNASSLSS--VLLGCSHLS-SLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 226
           PN S L+    L   S L   L+ G+Q+H    K P   +   LT L+S+Y KCG L  A
Sbjct: 521 PNPSHLTIPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLSLYAKCGLLHRA 580

Query: 227 CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHA 286
            ++F E+     V W A+I+ Y   G   +A+ +       GM+PDS T V +L AC  A
Sbjct: 581 QRVFDEMPHPSTVPWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTAC--A 638

Query: 287 GLVDLGI-QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFG 345
            + DL   +         G+A      T  VDL  + G++ +A ++  KM  K   A +G
Sbjct: 639 RIADLATGETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVA-WG 697

Query: 346 TLLS--ACRVHKRLDLAEFAAMNLFNLNP 372
            ++   A   H R  L  F AM    + P
Sbjct: 698 AMVGGYASNGHPREALDLFLAMQAEGMKP 726


>gi|222612904|gb|EEE51036.1| hypothetical protein OsJ_31684 [Oryza sativa Japonica Group]
          Length = 637

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 203/530 (38%), Positives = 301/530 (56%), Gaps = 46/530 (8%)

Query: 55  VVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM------PEKNSVS----- 103
           V  A   F  +P +D  SW ++I+G+ Q     +A  L   M      P   + +     
Sbjct: 115 VADARRVFDGMPARDMCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKA 174

Query: 104 ---------------------W-------SAMISGYIECGQLDKAVELFKVAPVKSVVAW 135
                                W       SA++  Y  CG++D A+ +F     K+ V+W
Sbjct: 175 AGASASSGIGEQIHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSW 234

Query: 136 TAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVH 195
            A+I+G+ + G  E +     L +   M   G      + SSV    + + +L+ GK VH
Sbjct: 235 NALIAGFARKGDGETT-----LLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVH 289

Query: 196 QLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGE 255
             + KS           ++ MY K G + DA K+F  + +KDVVTWN+M++ +AQ+G G 
Sbjct: 290 AHMIKSGERLSAFVGNTILDMYAKSGSMIDARKVFDRVDKKDVVTWNSMLTAFAQYGLGR 349

Query: 256 KALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCM 315
           +A+  F++M+  G+  + ITF+++L AC+H GLV  G QYFD M+ +Y +  + DHY  +
Sbjct: 350 EAVTHFEEMRKCGVHLNQITFLSILTACSHGGLVKEGKQYFD-MMKEYNLEPEIDHYVTV 408

Query: 316 VDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANA 375
           VDLLGRAG L +A+  I KMP KP  A++G LL +CR+HK   + +FAA ++F L+P + 
Sbjct: 409 VDLLGRAGLLNDALVFIFKMPMKPTAAVWGALLGSCRMHKNAKIGQFAADHVFELDPDDT 468

Query: 376 AGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPEL 435
            G  V L NIYA+  +WD  AR+R  MK   V K P  SW+E+   VH F + D  HP  
Sbjct: 469 -GPPVLLYNIYASTGQWDAAARVRKMMKATGVKKEPACSWVEIENSVHMFVANDDTHPRS 527

Query: 436 VSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTP 495
             I++K +E+  +++ AGYVP+ ++ L  V E+ ++  L +HSEK+A+AF LI +PLG  
Sbjct: 528 EEIYKKWEEISIQIRKAGYVPNTDYVLLHVDEQERQAKLQYHSEKIALAFALINMPLGAT 587

Query: 496 IRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           IR+ KN+R+CGDCH A +YIS + KREI+VRDT RFHHF  G+CSCGDYW
Sbjct: 588 IRIMKNIRICGDCHSAFRYISKVFKREIVVRDTNRFHHFSSGSCSCGDYW 637



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 62/246 (25%), Positives = 126/246 (51%), Gaps = 7/246 (2%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI 164
           +++I  Y +CG +  A  +F   P + + +WT++I+GY      +N   ++ L LL  M+
Sbjct: 103 NSLIHLYCKCGAVADARRVFDGMPARDMCSWTSLIAGY-----AQNDMPDEALGLLPGML 157

Query: 165 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 224
               +PN  + +S+L      +S  +G+Q+H L  K     D    + L+ MY +CG ++
Sbjct: 158 RGRFKPNGFTFASLLKAAGASASSGIGEQIHALTVKYDWHDDVYVGSALLDMYARCGRMD 217

Query: 225 DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 284
            A  +F +++ K+ V+WNA+I+G+A+ G GE  L +F +M+  G +    T+ ++  A  
Sbjct: 218 MAIAVFDQLESKNGVSWNALIAGFARKGDGETTLLMFAEMQRNGFEATHFTYSSVFSAIA 277

Query: 285 HAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIF 344
             G ++ G      M+   G          ++D+  ++G +++A  +  ++  K     +
Sbjct: 278 GIGALEQGKWVHAHMIKS-GERLSAFVGNTILDMYAKSGSMIDARKVFDRVD-KKDVVTW 335

Query: 345 GTLLSA 350
            ++L+A
Sbjct: 336 NSMLTA 341



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 80/168 (47%), Gaps = 13/168 (7%)

Query: 177 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK 236
           S++  C+   SL   + +H  +  S           LI +YCKCG + DA ++F  +  +
Sbjct: 69  SLITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVADARRVFDGMPAR 128

Query: 237 DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYF 296
           D+ +W ++I+GYAQ+   ++AL L   M     KP+  TF +LL A   +    +G Q  
Sbjct: 129 DMCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGIGEQI- 187

Query: 297 DSMVNDYGIAAKPDHY------TCMVDLLGRAGKLVEAVDLIKKMPFK 338
                 + +  K D +      + ++D+  R G++  A+ +  ++  K
Sbjct: 188 ------HALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESK 229


>gi|413944893|gb|AFW77542.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 829

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 197/533 (36%), Positives = 316/533 (59%), Gaps = 20/533 (3%)

Query: 22  KLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK----DTASWNTMI 77
            L +A+E+F+++P+ +V+++  +LS  +            F ++  +    +  ++++M+
Sbjct: 308 SLHNAREVFNRMPKHNVMAWTALLSGYVQRGSQDNQVMILFCKMLNEGIRPNHITYSSML 367

Query: 78  SGFVQKKNMAKARDLFLAMPEKN----SVSWSAMISGYIECGQLDKAVELFKVAPVKSVV 133
                  +    R +     + N    +V  +A++S Y E G +++A   F     K++V
Sbjct: 368 KACANLGDQDSGRQIHTHCVKSNLADLNVVGNALVSMYAESGSIEEARHAFDQLYEKNMV 427

Query: 134 AWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ 193
           +++  + G  +     N++ +   ++ RM +G+    +  +  S++   + +  L  G++
Sbjct: 428 SFSGNLDGDGR----SNTYQD--YQIERMELGI----STFTFGSLISAAASVGMLTKGQR 477

Query: 194 VHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGK 253
           +H L  K+    D      L+SMY +CG L DAC++F E+   +V++W +MISG A+HG 
Sbjct: 478 LHALSLKAGFGSDRAIGNSLVSMYSRCGYLVDACQVFDEMNDHNVISWTSMISGLAKHGY 537

Query: 254 GEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYT 313
             +AL LF  M   G+KP+ +T++A+L AC+HAGLV  G ++F  M   +G+  + +HY 
Sbjct: 538 AARALELFHDMIAAGVKPNDVTYIAVLSACSHAGLVKEGKEHFRMMQKHHGLIPRMEHYA 597

Query: 314 CMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPA 373
           CMVDLLGR+G + +A+D I +MP +    ++ TLL AC+ H  +D+ E AA ++  L P 
Sbjct: 598 CMVDLLGRSGLVEDALDFINEMPCQVDALVWKTLLGACKTHNNMDIGEIAANHVIQLEPQ 657

Query: 374 NAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHP 433
           + A  YV L+N+YA    WD VARIR  M++ N++K  G SW+ V   +HEFR+GD  HP
Sbjct: 658 DPAP-YVLLSNLYAEAGLWDQVARIRSLMRDKNLMKEKGLSWMHVDNTIHEFRAGDTSHP 716

Query: 434 ELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLG 493
           +   I+ KL+ L + +K+ GYVPD    LH + +E+KE  LL HSEK+A+AFGLI     
Sbjct: 717 QAEEIYTKLETLIREIKVMGYVPDTSVVLHDMSDELKELCLLQHSEKIAVAFGLISCTSA 776

Query: 494 T-PIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           T PIR+FKNLRVC DCH A KY+S    REII+RD+ RFH  KDG CSCG+YW
Sbjct: 777 TKPIRIFKNLRVCVDCHSALKYVSKATGREIILRDSNRFHRMKDGECSCGEYW 829



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 65/223 (29%), Positives = 110/223 (49%), Gaps = 40/223 (17%)

Query: 76  MISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAW 135
           +I  F +  ++   R +F  + E+  V W+ +I+ Y + G  D+AVELF           
Sbjct: 195 LIDMFAKNGDLVAMRRVFDGLFERTVVVWTLLITRYAQSGYSDEAVELF----------- 243

Query: 136 TAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVH 195
                       +EN                G +P+  +LSS+L  C+ L S +LG+Q+H
Sbjct: 244 ---------LDMLEN----------------GFQPDQYTLSSMLSACTELGSFRLGQQLH 278

Query: 196 QLVFKSPLCKDTTALTPLISMYCKCGD---LEDACKLFLEIQRKDVVTWNAMISGYAQHG 252
            L  +  L  D+     L+ MY K  +   L +A ++F  + + +V+ W A++SGY Q G
Sbjct: 279 SLALRLGLESDSCVSCGLVDMYAKSHNGQSLHNAREVFNRMPKHNVMAWTALLSGYVQRG 338

Query: 253 -KGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ 294
            +  + + LF KM +EG++P+ IT+ ++L AC + G  D G Q
Sbjct: 339 SQDNQVMILFCKMLNEGIRPNHITYSSMLKACANLGDQDSGRQ 381



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 96/391 (24%), Positives = 156/391 (39%), Gaps = 84/391 (21%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELF----DKIPQPDVVSYNIMLS-CILLNSDDVVAA 58
           +T V W  ++  +A Q G   +A ELF    +   QPD  + + MLS C  L S  +   
Sbjct: 218 RTVVVWTLLITRYA-QSGYSDEAVELFLDMLENGFQPDQYTLSSMLSACTELGSFRLGQQ 276

Query: 59  FDFFQ-RLPIK-DTASWNTMISGFVQKKN---MAKARDLFLAMPEKNSVSWSAMISGYIE 113
                 RL ++ D+     ++  + +  N   +  AR++F  MP+ N ++W+A++SGY++
Sbjct: 277 LHSLALRLGLESDSCVSCGLVDMYAKSHNGQSLHNAREVFNRMPKHNVMAWTALLSGYVQ 336

Query: 114 CGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNAS 173
            G  D  V                                   + L   M+  GIRPN  
Sbjct: 337 RGSQDNQV-----------------------------------MILFCKMLNEGIRPNHI 361

Query: 174 SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI 233
           + SS+L  C++L     G+Q+H    KS L         L+SMY + G +E+A   F ++
Sbjct: 362 TYSSMLKACANLGDQDSGRQIHTHCVKSNLADLNVVGNALVSMYAESGSIEEARHAFDQL 421

Query: 234 QRKDVV------------------------------TWNAMISGYAQHGKGEKALRLFDK 263
             K++V                              T+ ++IS  A  G   K  RL   
Sbjct: 422 YEKNMVSFSGNLDGDGRSNTYQDYQIERMELGISTFTFGSLISAAASVGMLTKGQRLHAL 481

Query: 264 MKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAG 323
               G   D     +L+   +  G +    Q FD M ND+ + +    +T M+  L + G
Sbjct: 482 SLKAGFGSDRAIGNSLVSMYSRCGYLVDACQVFDEM-NDHNVIS----WTSMISGLAKHG 536

Query: 324 KLVEAVDLIKKM---PFKPQPAIFGTLLSAC 351
               A++L   M     KP    +  +LSAC
Sbjct: 537 YAARALELFHDMIAAGVKPNDVTYIAVLSAC 567



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 70/249 (28%), Positives = 117/249 (46%), Gaps = 13/249 (5%)

Query: 95  AMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPV--KSVVAWTAMISGYMKFGYVENSW 152
           ++ E ++V  +++++ Y +C  +  A  +F   PV  + +V+WTAM S   +     N  
Sbjct: 78  SLLETDAVVANSLLTLYSKCSAVAAARSVFDGMPVGLRDLVSWTAMASCLSR-----NGA 132

Query: 153 AEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQL-GKQVHQLVFKSPL-CKDTTAL 210
             + L+L    +  G+ PNA +L +    C       L G  V  LVFK      D +  
Sbjct: 133 EAEALRLFGETLEEGLLPNAFTLCAATQACFASELFHLAGGAVLGLVFKLGFWGTDVSVG 192

Query: 211 TPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMK 270
             LI M+ K GDL    ++F  +  + VV W  +I+ YAQ G  ++A+ LF  M + G +
Sbjct: 193 CALIDMFAKNGDLVAMRRVFDGLFERTVVVWTLLITRYAQSGYSDEAVELFLDMLENGFQ 252

Query: 271 PDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRA---GKLVE 327
           PD  T  ++L AC   G   LG Q   S+    G+ +       +VD+  ++     L  
Sbjct: 253 PDQYTLSSMLSACTELGSFRLG-QQLHSLALRLGLESDSCVSCGLVDMYAKSHNGQSLHN 311

Query: 328 AVDLIKKMP 336
           A ++  +MP
Sbjct: 312 AREVFNRMP 320



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 61/252 (24%), Positives = 121/252 (48%), Gaps = 22/252 (8%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQ--RLPI 67
           N++++ +A + G +++A+  FD++ + ++VS++       L+ D     +  +Q  R+ +
Sbjct: 399 NALVSMYA-ESGSIEEARHAFDQLYEKNMVSFSGN-----LDGDGRSNTYQDYQIERMEL 452

Query: 68  K-DTASWNTMIS-----GFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAV 121
              T ++ ++IS     G + K     A  L        ++  ++++S Y  CG L  A 
Sbjct: 453 GISTFTFGSLISAAASVGMLTKGQRLHALSLKAGFGSDRAIG-NSLVSMYSRCGYLVDAC 511

Query: 122 ELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLG 181
           ++F      +V++WT+MISG  K GY     A   L+L   MI  G++PN  +  +VL  
Sbjct: 512 QVFDEMNDHNVISWTSMISGLAKHGY-----AARALELFHDMIAAGVKPNDVTYIAVLSA 566

Query: 182 CSHLSSLQLGKQVHQLVFK-SPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ-RKDVV 239
           CSH   ++ GK+  +++ K   L         ++ +  + G +EDA     E+  + D +
Sbjct: 567 CSHAGLVKEGKEHFRMMQKHHGLIPRMEHYACMVDLLGRSGLVEDALDFINEMPCQVDAL 626

Query: 240 TWNAMISGYAQH 251
            W  ++     H
Sbjct: 627 VWKTLLGACKTH 638


>gi|449443492|ref|XP_004139511.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Cucumis sativus]
          Length = 678

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 211/567 (37%), Positives = 317/567 (55%), Gaps = 51/567 (8%)

Query: 22  KLKDAQELFDKIP----QPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMI 77
           KLK  + +   I     + D+V  N +L+ +      +  A D F ++P KD  SW  +I
Sbjct: 120 KLKQGRAIHAHIQSSTFEDDLVLLNFILN-MYAKCGSLEEAQDLFDKMPTKDMVSWTVLI 178

Query: 78  SGFVQKKNMAKARDLFLAM------PEKNSVS---------------------------- 103
           SG+ Q    ++A  LF  M      P + ++S                            
Sbjct: 179 SGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKASGTGPSDHHGRQLHAFSLKYGYD 238

Query: 104 -----WSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLK 158
                 S+++  Y     + +A  +F     K+VV+W A+I+G+ + G       E  ++
Sbjct: 239 MNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALIAGHARKGE-----GEHVMR 293

Query: 159 LLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYC 218
           L   M+  G  P   + SSV   C+   SL+ GK VH  V KS           LI MY 
Sbjct: 294 LFLQMLRQGFEPTHFTYSSVFTACASSGSLEQGKWVHAHVIKSGGQPIAYIGNTLIDMYA 353

Query: 219 KCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVA 278
           K G ++DA K+F  + ++D+V+WN++ISGYAQHG G +AL+LF++M    ++P+ ITF++
Sbjct: 354 KSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEALQLFEQMLKAKVQPNEITFLS 413

Query: 279 LLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 338
           +L AC+H+GL+D G QY+  ++  + I A+  H+  +VDLLGRAG+L EA   I++MP K
Sbjct: 414 VLTACSHSGLLDEG-QYYFELMKKHKIEAQVAHHVTVVDLLGRAGRLNEANKFIEEMPIK 472

Query: 339 PQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARI 398
           P  A++G LL +CR+HK +DL  +AA  +F L+P ++ G +V L+NIYA+  +  D A++
Sbjct: 473 PTAAVWGALLGSCRMHKNMDLGVYAAEQIFELDPHDS-GPHVLLSNIYASAGRLSDAAKV 531

Query: 399 RLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDL 458
           R  MKE+ V K P  SW+E+   VH F + D  HP    I    +++  ++K  GYVPD 
Sbjct: 532 RKMMKESGVKKEPACSWVEIENEVHVFVANDDSHPMREEIQRMWEKISGKIKEIGYVPDT 591

Query: 459 EFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAI 518
              L  + ++ +E  L +HSEKLA+AF ++K P G  IR+ KN+R+CGDCH A K+ S +
Sbjct: 592 SHVLFFMNQQDRELKLQYHSEKLALAFAVLKTPPGLTIRIKKNIRICGDCHSAFKFASRV 651

Query: 519 EKREIIVRDTTRFHHFKDGTCSCGDYW 545
             REIIVRDT RFHHF  G CSC DYW
Sbjct: 652 LGREIIVRDTNRFHHFLHGMCSCRDYW 678



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 82/161 (50%), Gaps = 1/161 (0%)

Query: 168 IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC 227
           + P  +  S +L  C++L  L+ G+ +H  +  S    D   L  +++MY KCG LE+A 
Sbjct: 101 LEPERTLYSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCGSLEEAQ 160

Query: 228 KLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG 287
            LF ++  KD+V+W  +ISGY+Q G+  +AL LF KM   G +P+  T  +LL A    G
Sbjct: 161 DLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKASG-TG 219

Query: 288 LVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEA 328
             D   +   +    YG        + ++D+  R   + EA
Sbjct: 220 PSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREA 260


>gi|414876354|tpg|DAA53485.1| TPA: hypothetical protein ZEAMMB73_494075 [Zea mays]
          Length = 830

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 207/538 (38%), Positives = 325/538 (60%), Gaps = 22/538 (4%)

Query: 23  LKDAQELFDKIPQPDVVSYNIMLSCILL--NSDDVVAAFDFFQRLPIK-DTASWNTMISG 79
           L  A+++FD+ P  ++  +N ML  + L  + ++ +       RL +  D+ S+   +  
Sbjct: 300 LPAARQVFDEAPVKNIFVWNAMLKALALADHGEEALTCLADMGRLGVPVDSYSYAHGLKA 359

Query: 80  FVQKKNM-----AKARDLFLAMPEK----NSVSWSAMISGYIECGQLDKAVELFKVAPVK 130
            +          A+ R++      +    ++   + +I  Y + G +  A  +F   P +
Sbjct: 360 CIAASASHLPASARVREMHAHAIRRGYGLHTHVATTLIDCYAKLGIVSYAERVFTSMPDR 419

Query: 131 SVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIG--LGIRPNASSLSSVLLGCSHLSSL 188
           ++V+W+AMI  Y K     N    D +++ + M+     + PN+ ++ SVL  C+ +++L
Sbjct: 420 NLVSWSAMIGCYAK-----NERPGDAIQIFQEMMASDADLVPNSITIVSVLHACAGVNAL 474

Query: 189 QLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI-QRKDVVTWNAMISG 247
             GK +H  + +       + L  L++MY KCG LE    +F  I +R++VV+WN++ISG
Sbjct: 475 GQGKVLHAYILRRGFDLLVSVLNALMAMYMKCGCLETGRYIFNWIGRRRNVVSWNSLISG 534

Query: 248 YAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAA 307
           Y  HG G ++L++F++M +EG+ P+ ITFV++L AC+H GLV+ G + F+SMV +Y +  
Sbjct: 535 YGMHGFGRESLQVFEEMIEEGISPNIITFVSVLGACSHVGLVEQGKKLFESMV-EYNVTP 593

Query: 308 KPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNL 367
           + +HY CMVDLLGRAG+L EAV+LI+ M  +P P ++G+LL ACR+H  ++ AE A  +L
Sbjct: 594 RAEHYACMVDLLGRAGRLDEAVELIQSMRIQPSPQVWGSLLGACRIHGHVEYAEMACSHL 653

Query: 368 FNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRS 427
           F+L P NA G YV LA+IYA  K  + V  ++  ++E+ + K+PG SWIEV   ++ F S
Sbjct: 654 FDLEPRNA-GNYVLLADIYARAKLQNQVDVLKELLEEHALEKVPGCSWIEVKKKLYSFVS 712

Query: 428 GDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGL 487
            D  +P++  +   + E   +MK  GYVPD    L+ + EE KE++LL HSEKLA+AFGL
Sbjct: 713 VDNKNPQVEELQALIGEFVTQMKNEGYVPDTRSVLYDIEEEEKERILLGHSEKLAVAFGL 772

Query: 488 IKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           IK   G  IR+ KNLR+C DCH  TK+IS    REI+VRD  RFHHF++G CSC DYW
Sbjct: 773 IKTGSGEAIRITKNLRLCEDCHSVTKFISKFTDREIVVRDVNRFHHFRNGVCSCRDYW 830



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 73/279 (26%), Positives = 121/279 (43%), Gaps = 41/279 (14%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G+L  A  L   +P P   +Y  +L       D  +AA    +RL               
Sbjct: 231 GRLAQATALLQGLPAPTQRTYESLLLAAARARDTALAA-AVHRRL--------------- 274

Query: 81  VQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMIS 140
             + +     D FL+         + +I  Y     L  A ++F  APVK++  W AM+ 
Sbjct: 275 --EADPVFRSDPFLS---------TRLIEAYAALSALPAARQVFDEAPVKNIFVWNAMLK 323

Query: 141 GYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGC-----SHLSSLQLGKQVH 195
                 +      E+ L  L  M  LG+  ++ S +  L  C     SHL +    +++H
Sbjct: 324 ALALADH-----GEEALTCLADMGRLGVPVDSYSYAHGLKACIAASASHLPASARVREMH 378

Query: 196 QLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGE 255
               +      T   T LI  Y K G +  A ++F  +  +++V+W+AMI  YA++ +  
Sbjct: 379 AHAIRRGYGLHTHVATTLIDCYAKLGIVSYAERVFTSMPDRNLVSWSAMIGCYAKNERPG 438

Query: 256 KALRLFDKM--KDEGMKPDSITFVALLLACNHAGLVDLG 292
            A+++F +M   D  + P+SIT V++L AC  AG+  LG
Sbjct: 439 DAIQIFQEMMASDADLVPNSITIVSVLHAC--AGVNALG 475


>gi|224118652|ref|XP_002331415.1| predicted protein [Populus trichocarpa]
 gi|222873629|gb|EEF10760.1| predicted protein [Populus trichocarpa]
          Length = 458

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 186/440 (42%), Positives = 276/440 (62%), Gaps = 7/440 (1%)

Query: 107 MISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGL 166
           ++  Y +CG L  A ++F +A VK+V  WT++I GY   GY       + L L + ++  
Sbjct: 25  LLGMYAKCGDLISARKVFDMALVKTVFLWTSIIGGYTHMGY-----PAEALLLFKKLLKT 79

Query: 167 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 226
            I+PN ++L+++L  C+ L SL +GK++ + +  +    D    T LI M+ KCG +  A
Sbjct: 80  AIKPNGATLATILSACADLGSLDMGKEIEEYILSNGFQSDRQVQTSLIHMFSKCGSIGKA 139

Query: 227 CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKD-EGMKPDSITFVALLLACNH 285
             +F  I  KD+  W++MI+GYA HG  E+AL LF KM + + +KPD++ F ++LLAC+H
Sbjct: 140 ISVFERISDKDLAAWSSMINGYAIHGMAEEALGLFHKMLEIKEIKPDAVVFTSILLACSH 199

Query: 286 AGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFG 345
            GLV+ G+++F SM  D+GI    +HY C+VDLLGRAG+   A+  I+ MP K Q  ++ 
Sbjct: 200 VGLVEDGLKFFKSMQKDFGIVPSVEHYMCLVDLLGRAGQFELALKTIRVMPVKLQAQVWA 259

Query: 346 TLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKEN 405
             LSAC  H  L+L E AA  L  +NP + A  YV +AN+Y +M KW + A  R  M + 
Sbjct: 260 PFLSACTKHCNLELGELAARKLLYMNPGSHAN-YVLMANLYTSMGKWKEAAVTRSLMIDR 318

Query: 406 NVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAV 465
            +VK PG+S +E+   VH F +GDR H + + I++KL+E+  ++  AGYVP+ +  +H +
Sbjct: 319 GLVKAPGWSQVEINGSVHVFIAGDRSHTQSIDIYKKLEEINLKLAEAGYVPETDTVIHDL 378

Query: 466 GEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIV 525
             E KE+ L  HSE+LAIAFGLI    G+ +R+ KN R C DCH A K+IS I  R +IV
Sbjct: 379 EREEKEEALKVHSERLAIAFGLISTEAGSTLRIMKNHRTCVDCHSALKFISKITGRHLIV 438

Query: 526 RDTTRFHHFKDGTCSCGDYW 545
           RD +RFHHF+ G C+C D+W
Sbjct: 439 RDGSRFHHFESGKCTCKDFW 458



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 52/88 (59%), Gaps = 6/88 (6%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI 164
           +++I  + +CG + KA+ +F+    K + AW++MI+GY   G      AE+ L L   M+
Sbjct: 124 TSLIHMFSKCGSIGKAISVFERISDKDLAAWSSMINGYAIHGM-----AEEALGLFHKML 178

Query: 165 GLG-IRPNASSLSSVLLGCSHLSSLQLG 191
            +  I+P+A   +S+LL CSH+  ++ G
Sbjct: 179 EIKEIKPDAVVFTSILLACSHVGLVEDG 206



 Score = 42.4 bits (98), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 84/183 (45%), Gaps = 21/183 (11%)

Query: 3   VKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFF 62
           VKT   W S++ G+    G   +A  LF K+ +  +      L+ IL    D+  + D  
Sbjct: 47  VKTVFLWTSIIGGYT-HMGYPAEALLLFKKLLKTAIKPNGATLATILSACADL-GSLDMG 104

Query: 63  QRLP--------IKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIEC 114
           + +           D     ++I  F +  ++ KA  +F  + +K+  +WS+MI+GY   
Sbjct: 105 KEIEEYILSNGFQSDRQVQTSLIHMFSKCGSIGKAISVFERISDKDLAAWSSMINGYAIH 164

Query: 115 GQLDKAVELF-KVAPVKSV----VAWTAMISGYMKFGYVENSWAEDGLKLLR-MMIGLGI 168
           G  ++A+ LF K+  +K +    V +T+++      G V     EDGLK  + M    GI
Sbjct: 165 GMAEEALGLFHKMLEIKEIKPDAVVFTSILLACSHVGLV-----EDGLKFFKSMQKDFGI 219

Query: 169 RPN 171
            P+
Sbjct: 220 VPS 222


>gi|224122590|ref|XP_002330519.1| predicted protein [Populus trichocarpa]
 gi|222872453|gb|EEF09584.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 216/577 (37%), Positives = 305/577 (52%), Gaps = 48/577 (8%)

Query: 11  SVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIM---LSCILLNSDDVVAAFDFFQRLPI 67
           S L   A   G L+  Q +   I +    S N++   L  + + S  V      F+ +  
Sbjct: 156 SSLVSTATNMGDLRYGQSIHGCICKYGFESDNLVSNPLIMMYMKSRCVEDGNKVFEAMTN 215

Query: 68  KDTASWNTMISGFVQKKNMAKARDLFLAM------------------------PE----- 98
            D  SWN ++SGF   +   +   +F  M                        PE     
Sbjct: 216 PDLVSWNALLSGFYDSQTCGRGPRIFYQMLLEGFKPNMFTFISVLRSCSSLLDPEFGKQV 275

Query: 99  -----KNSVS-----WSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYV 148
                KNS        +A++  Y +   L+ A   F     + + +WT +ISGY      
Sbjct: 276 HAHIIKNSSDDDDFVGTALVDMYAKARCLEDAGVAFDRLVNRDIFSWTVIISGY-----A 330

Query: 149 ENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTT 208
           +   AE  +K  R M   GI+PN  +L+S L GCSH+++L+ G+Q+H +  K+    D  
Sbjct: 331 QTDQAEKAVKYFRQMQREGIKPNEYTLASCLSGCSHMATLENGRQLHAVAVKAGHFGDIF 390

Query: 209 ALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEG 268
             + L+ +Y KCG +E A  +F  +  +D+V+WN +ISGY+QHG+GEKAL  F  M  EG
Sbjct: 391 VGSALVDLYGKCGCMEHAEAIFKGLISRDIVSWNTIISGYSQHGQGEKALEAFRMMLSEG 450

Query: 269 MKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEA 328
           + PD  TF+ +L AC+  GLV+ G + FDSM   YGI    +HY CMVD+LGRAGK  E 
Sbjct: 451 IMPDEATFIGVLSACSFMGLVEEGKKRFDSMSKIYGINPSIEHYACMVDILGRAGKFNEV 510

Query: 329 VDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAA 388
              I++M   P   I+ T+L AC++H  +D  E AA  LF + P   +  Y+ L+NI+A+
Sbjct: 511 KIFIEEMNLTPYSLIWETVLGACKLHGNVDFGEKAAKKLFEMEPMMDSS-YILLSNIFAS 569

Query: 389 MKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKR 448
             +WDDV  IR  M    + K PG SW+EV   VH F S D  HP++  I+ KL +L + 
Sbjct: 570 KGRWDDVRNIRALMTSRGIKKEPGCSWVEVDGQVHVFLSQDGSHPKIREIYAKLDKLGQS 629

Query: 449 MKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDC 508
           +   GYVP  E  LH V  + K + L +HSE+LA++F L+      PIR+FKNLR+C DC
Sbjct: 630 LMSIGYVPKTEVVLHNVSNKEKMEHLYYHSERLALSFALLSTNAVKPIRIFKNLRICEDC 689

Query: 509 HRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           H   K IS I  +EI+VRD  RFHHFK GTCSC D W
Sbjct: 690 HDFMKLISDITNQEIVVRDIRRFHHFKRGTCSCQDRW 726



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 105/418 (25%), Positives = 172/418 (41%), Gaps = 96/418 (22%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDD------ 54
           M  K  V+WN++L G+A Q G  K   +LF K+ + +       LS +L    +      
Sbjct: 11  MPEKNGVSWNALLNGYA-QLGDGKKVLKLFCKMKECETKFSKFTLSTVLKGCANTGSLRE 69

Query: 55  --------------------------------VVAAFDFFQRLPIKDTASWNTMISGFVQ 82
                                           V  A   F ++   D  +W+ MI+G  Q
Sbjct: 70  GKVLHALALRSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKIRNPDVVAWSAMITGLDQ 129

Query: 83  KKNMAKARDLFLAMPEK----NSVSWSAMISGYIECGQL--------------------- 117
           + +  +A +LF  M  K    N  + S+++S     G L                     
Sbjct: 130 QGHGQEAAELFHLMRRKGARPNQFTLSSLVSTATNMGDLRYGQSIHGCICKYGFESDNLV 189

Query: 118 ----------DKAVE----LFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMM 163
                      + VE    +F+      +V+W A++S     G+ ++     G ++   M
Sbjct: 190 SNPLIMMYMKSRCVEDGNKVFEAMTNPDLVSWNALLS-----GFYDSQTCGRGPRIFYQM 244

Query: 164 IGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDL 223
           +  G +PN  +  SVL  CS L   + GKQVH  + K+    D    T L+ MY K   L
Sbjct: 245 LLEGFKPNMFTFISVLRSCSSLLDPEFGKQVHAHIIKNSSDDDDFVGTALVDMYAKARCL 304

Query: 224 EDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC 283
           EDA   F  +  +D+ +W  +ISGYAQ  + EKA++ F +M+ EG+KP+  T  + L  C
Sbjct: 305 EDAGVAFDRLVNRDIFSWTVIISGYAQTDQAEKAVKYFRQMQREGIKPNEYTLASCLSGC 364

Query: 284 NHAGLVDLGIQYFDSMVNDYGIAAKPDHY------TCMVDLLGRAGKLVEAVDLIKKM 335
           +H   ++ G Q        + +A K  H+      + +VDL G+ G +  A  + K +
Sbjct: 365 SHMATLENGRQL-------HAVAVKAGHFGDIFVGSALVDLYGKCGCMEHAEAIFKGL 415



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 106/222 (47%), Gaps = 37/222 (16%)

Query: 86  MAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKF 145
           M  A  LF  MPEKN VSW+A+++GY + G   K ++LF                   K 
Sbjct: 1   MELAERLFFGMPEKNGVSWNALLNGYAQLGDGKKVLKLF------------------CKM 42

Query: 146 GYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCK 205
              E  +++                   +LS+VL GC++  SL+ GK +H L  +S    
Sbjct: 43  KECETKFSK------------------FTLSTVLKGCANTGSLREGKVLHALALRSGCEI 84

Query: 206 DTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMK 265
           D      L+ MY KCG + DA K+F +I+  DVV W+AMI+G  Q G G++A  LF  M+
Sbjct: 85  DEFLGCSLVDMYSKCGTVYDALKVFTKIRNPDVVAWSAMITGLDQQGHGQEAAELFHLMR 144

Query: 266 DEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAA 307
            +G +P+  T  +L+    + G +  G Q     +  YG  +
Sbjct: 145 RKGARPNQFTLSSLVSTATNMGDLRYG-QSIHGCICKYGFES 185


>gi|86438643|emb|CAJ26357.1| Selenium binding protein [Brachypodium sylvaticum]
          Length = 624

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 203/530 (38%), Positives = 300/530 (56%), Gaps = 46/530 (8%)

Query: 55  VVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM------PEKNSVS----- 103
           VV A   F ++  KD  SW ++I+G+ Q    A+A  L   M      P   + +     
Sbjct: 102 VVEAHKVFDKMRKKDMVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTFASLLKA 161

Query: 104 ---------------------W-------SAMISGYIECGQLDKAVELFKVAPVKSVVAW 135
                                W       SA++  Y  CG++D A  +F     K+ V+W
Sbjct: 162 AGAYADSGIGGQIHALAVKCDWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSW 221

Query: 136 TAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVH 195
            A+ISG+ + G       E  L +   M   G      + SS+  G + + +L+ GK VH
Sbjct: 222 NALISGFARKGD-----GETALMVFAEMQRNGFEATHFTYSSIFSGLAGIGALEQGKWVH 276

Query: 196 QLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGE 255
             + KS           ++ MY K G + DA K+F  +  KD+VTWN+M++ +AQ+G G+
Sbjct: 277 AHMVKSRQKLTAFVGNTMLDMYAKSGSMIDARKVFERVLNKDLVTWNSMLTAFAQYGLGK 336

Query: 256 KALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCM 315
           +A+  F++M+  G+  + ITF+ +L AC+H GLV  G  YFD M+ +Y +  + +HY  +
Sbjct: 337 EAVSHFEEMRKSGIYLNQITFLCILTACSHGGLVKEGKHYFD-MIKEYNLEPEIEHYVTV 395

Query: 316 VDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANA 375
           VDLLGRAG L  A+  I KMP +P  A++G LL+ACR+HK   + +FAA ++F L+P ++
Sbjct: 396 VDLLGRAGLLNYALVFIFKMPMEPTAAVWGALLAACRMHKNAKVGQFAADHVFQLDPDDS 455

Query: 376 AGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPEL 435
            G  V L NIYA+   WD  AR+R  MK   V K P  SW+E+G  VH F + D  HP  
Sbjct: 456 -GPPVLLYNIYASTGHWDAAARVRKMMKATGVKKEPACSWVEIGNSVHMFVANDDTHPRA 514

Query: 436 VSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTP 495
             I++   E+  +++  GYVPD+++ L  V E+ +E  L +HSEK+A+AF LI++P G  
Sbjct: 515 EEIYKMWDEISMKIRKEGYVPDMDYVLLHVDEQEREANLQYHSEKIALAFALIQMPAGAT 574

Query: 496 IRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           IR+ KN+R+CGDCH A KYIS + +REI+VRDT RFHHF +G+CSCGDYW
Sbjct: 575 IRIMKNIRICGDCHSAFKYISKVFEREIVVRDTNRFHHFSNGSCSCGDYW 624



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 67/271 (24%), Positives = 138/271 (50%), Gaps = 18/271 (6%)

Query: 73  WNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMISGYIECGQLDKAVELFKVAP 128
           ++  I+   Q KN+  AR +   +     E ++   +++I  Y +CG + +A ++F    
Sbjct: 54  YHAFITACAQSKNLDDARKIHGHLASSRFEGDAFLDNSLIHLYCKCGSVVEAHKVFDKMR 113

Query: 129 VKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSL 188
            K +V+WT++I+GY      +N    + + LL  M+    +PN  + +S+L      +  
Sbjct: 114 KKDMVSWTSLIAGY-----AQNDMPAEAIGLLPGMLKGRFKPNGFTFASLLKAAGAYADS 168

Query: 189 QLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGY 248
            +G Q+H L  K    +D    + L+ MY +CG ++ A  +F ++  K+ V+WNA+ISG+
Sbjct: 169 GIGGQIHALAVKCDWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALISGF 228

Query: 249 AQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK 308
           A+ G GE AL +F +M+  G +    T+ ++      +GL  +G       V+ + + ++
Sbjct: 229 ARKGDGETALMVFAEMQRNGFEATHFTYSSIF-----SGLAGIGALEQGKWVHAHMVKSR 283

Query: 309 PDHY----TCMVDLLGRAGKLVEAVDLIKKM 335
                     M+D+  ++G +++A  + +++
Sbjct: 284 QKLTAFVGNTMLDMYAKSGSMIDARKVFERV 314



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 85/177 (48%), Gaps = 13/177 (7%)

Query: 168 IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC 227
           + P      + +  C+   +L   +++H  +  S    D      LI +YCKCG + +A 
Sbjct: 47  LAPTPRVYHAFITACAQSKNLDDARKIHGHLASSRFEGDAFLDNSLIHLYCKCGSVVEAH 106

Query: 228 KLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG 287
           K+F ++++KD+V+W ++I+GYAQ+    +A+ L   M     KP+  TF +LL A     
Sbjct: 107 KVFDKMRKKDMVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTFASLLKAAGAYA 166

Query: 288 LVDLGIQYFDSMVNDYGIAAKPDHY------TCMVDLLGRAGKLVEAVDLIKKMPFK 338
              +G Q        + +A K D +      + ++D+  R GK+  A  +  K+  K
Sbjct: 167 DSGIGGQI-------HALAVKCDWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSK 216



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 46/239 (19%), Positives = 99/239 (41%), Gaps = 13/239 (5%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDF--FQRLPIKDTA-SWNTMI 77
           GK+  A  +FDK+   + VS+N ++S      D   A   F   QR   + T  +++++ 
Sbjct: 201 GKMDMATAVFDKLDSKNGVSWNALISGFARKGDGETALMVFAEMQRNGFEATHFTYSSIF 260

Query: 78  SGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISGYIECGQLDKAVELFKVAPVKSVV 133
           SG      + + + +   M +      +   + M+  Y + G +  A ++F+    K +V
Sbjct: 261 SGLAGIGALEQGKWVHAHMVKSRQKLTAFVGNTMLDMYAKSGSMIDARKVFERVLNKDLV 320

Query: 134 AWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ 193
            W +M++ + ++G       ++ +     M   GI  N  +   +L  CSH   ++ GK 
Sbjct: 321 TWNSMLTAFAQYGL-----GKEAVSHFEEMRKSGIYLNQITFLCILTACSHGGLVKEGKH 375

Query: 194 VHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI-QRKDVVTWNAMISGYAQH 251
              ++ +  L  +      ++ +  + G L  A     ++        W A+++    H
Sbjct: 376 YFDMIKEYNLEPEIEHYVTVVDLLGRAGLLNYALVFIFKMPMEPTAAVWGALLAACRMH 434


>gi|357119334|ref|XP_003561397.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g62890-like [Brachypodium distachyon]
          Length = 635

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 201/529 (37%), Positives = 311/529 (58%), Gaps = 17/529 (3%)

Query: 28  ELFDKIPQPDVVSYNIMLSCI---LLNSDDVVAAF--DFFQRLPIKDTASWNTMISGFVQ 82
            LF  +P+ ++ S+  +L+ I   L  +D   ++F       L +K  A+ +  +   + 
Sbjct: 113 RLFPNLPRRNLHSFTFLLASISNHLDATDHRASSFLGSHVHALAVKAGAAGDLYVRNALT 172

Query: 83  K-----KNMAKARDLFLAMPE-KNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWT 136
                  ++   R +F  +P  ++ V+W+A+++GY+  G +  A E+F+  PV+  V+W+
Sbjct: 173 HFYGVCGDVGAMRTVFDELPRVRDVVTWNAVLAGYVRAGMVRAAREVFEEMPVRDEVSWS 232

Query: 137 AMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQ 196
            ++ GY+K G ++ +     L + R M+  G+R N +++ + L   + +  L+ G+ VH+
Sbjct: 233 TLVGGYVKEGELDVA-----LGVFRDMVEKGVRVNEAAVVTALSAAAQMGLLEHGRFVHE 287

Query: 197 LVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEK 256
           +V ++ +         L+ M+ KCG +  A ++F  + R+DV  WNAMI G A HG G+ 
Sbjct: 288 VVQRTGMPVSVNVGAALVDMFSKCGCVAVAREVFDGMPRRDVFAWNAMICGLASHGLGQD 347

Query: 257 ALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMV 316
           A+ LF +  DEG+ P  ITFV +L AC+  GLV  G +YF  MV+ Y I  + +HY CMV
Sbjct: 348 AVELFWRFLDEGLWPTDITFVGVLNACSRCGLVAEGRRYFKLMVDKYRIEPEMEHYGCMV 407

Query: 317 DLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAA 376
           DLLGRAG + EA++LI+ M   P P ++GT+LSAC+ H  +DL       L  L PA+  
Sbjct: 408 DLLGRAGLVSEAIELIEGMHIAPDPVLWGTVLSACKTHNLVDLGITVGNKLIELEPAH-D 466

Query: 377 GCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELV 436
           G YV LA+IYA  KKWD+V  +R  M      K  G+S +E    +H+F  GD  H + V
Sbjct: 467 GHYVLLASIYAKAKKWDEVREVRKLMSSRGTGKSAGWSLMEAQGNLHKFLVGDMDHKDSV 526

Query: 437 SIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPI 496
            I+  L  + +R+  AGYVPD+   LH +G+E K   +  HSE+LAIA+G I   +G+PI
Sbjct: 527 QIYNMLDMINRRLADAGYVPDVSSVLHDIGDEEKVHAIKVHSERLAIAYGFIVTEVGSPI 586

Query: 497 RVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           R+ KNL+VCGDCH  +K ++ +  REIIVRD +RFHH K+G CSC DYW
Sbjct: 587 RIVKNLQVCGDCHEFSKMVTKVFNREIIVRDGSRFHHMKEGKCSCLDYW 635



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 79/342 (23%), Positives = 142/342 (41%), Gaps = 50/342 (14%)

Query: 2   NVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNS--DDVVAAF 59
            V+  V WN+VLAG+ +  G ++ A+E+F+++P  D VS++ ++   +     D  +  F
Sbjct: 193 RVRDVVTWNAVLAGYVRA-GMVRAAREVFEEMPVRDEVSWSTLVGGYVKEGELDVALGVF 251

Query: 60  -DFFQRLPIKDTASWNTMISGFVQKKNMAKARDLF-----LAMPEKNSVSWSAMISGYIE 113
            D  ++    + A+  T +S   Q   +   R +        MP   +V  +A++  + +
Sbjct: 252 RDMVEKGVRVNEAAVVTALSAAAQMGLLEHGRFVHEVVQRTGMPVSVNVG-AALVDMFSK 310

Query: 114 CGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNAS 173
           CG +  A E+F   P + V AW AMI G    G       +D ++L    +  G+ P   
Sbjct: 311 CGCVAVAREVFDGMPRRDVFAWNAMICGLASHGL-----GQDAVELFWRFLDEGLWPTDI 365

Query: 174 SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI 233
           +   VL  CS    +  G++  +L+       D   + P +  Y                
Sbjct: 366 TFVGVLNACSRCGLVAEGRRYFKLMV------DKYRIEPEMEHY---------------- 403

Query: 234 QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGI 293
                     M+    + G   +A+ L + M    + PD + +  +L AC    LVDLGI
Sbjct: 404 --------GCMVDLLGRAGLVSEAIELIEGMH---IAPDPVLWGTVLSACKTHNLVDLGI 452

Query: 294 QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335
              + ++      A   HY  +  +  +A K  E  ++ K M
Sbjct: 453 TVGNKLIELE--PAHDGHYVLLASIYAKAKKWDEVREVRKLM 492


>gi|357462829|ref|XP_003601696.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355490744|gb|AES71947.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 616

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 219/566 (38%), Positives = 313/566 (55%), Gaps = 47/566 (8%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLS---------------------------------- 46
           G LKDA +LFD +PQ D V++  +LS                                  
Sbjct: 57  GLLKDALKLFDALPQQDHVAWATVLSACNLSNLPHKAFSISLPILHEGLQPDHFVFSSLI 116

Query: 47  --CILLNSDDVVAAFDFFQRLPI----KDTASWNTMISGFVQKKNMAKARDLFLAMPEKN 100
             C  L S  V        R  +    +D    ++++  + + +     R +F ++ E +
Sbjct: 117 KACANLGSVHVKLGKQLHARFLLSPFFEDDVVKSSLVDMYAKFELPDYGRAVFDSIFELS 176

Query: 101 SVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLL 160
           S+SW+AMISGY   G+  +A+ELF+ +P K++ AWTA+ISG ++ G      A D L L 
Sbjct: 177 SISWTAMISGYARSGRKLEALELFRESPFKNLYAWTALISGLVQSGN-----ANDALYLF 231

Query: 161 RMMIGLGIR-PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCK 219
             M   G+   +   LSSV+  C++ +  +LGKQVH +V              L+ MY K
Sbjct: 232 VEMRREGVSIADPLVLSSVVGACANSAVRELGKQVHCVVITLGYESCLFISNALVDMYAK 291

Query: 220 CGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVAL 279
           C D+  A  +F E++RKDVV+W ++I G AQHG  E+AL L+D M   G+KP+ +TFV L
Sbjct: 292 CSDVVAAKYIFCEMRRKDVVSWTSIIVGTAQHGLAEEALTLYDDMVLAGVKPNEVTFVGL 351

Query: 280 LLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKP 339
           + AC+H GLV  G   F SMV D+GI     HYTC++DL  R+G L EA +LI+ MP KP
Sbjct: 352 IYACSHVGLVSKGRALFKSMVEDFGIRPSLQHYTCLLDLFSRSGHLDEAENLIRTMPVKP 411

Query: 340 QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIR 399
               +  LLSAC+ H    +A   A +L +L P + +  Y+ L+NIYA    W++V+ +R
Sbjct: 412 DEPTWAALLSACKHHGNTKMAVRIADHLLDLKPEDPSS-YILLSNIYAGAGMWENVSMVR 470

Query: 400 LSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLE 459
             M    V K+PGYS +++G     F +G+   P    I   + +L+  M+  GYVPD  
Sbjct: 471 KLMAVKEVKKVPGYSCVDLGREFQVFHAGEASQPMKDEILGLMTKLDSEMRRRGYVPDTS 530

Query: 460 FALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIE 519
             L  + ++ KE+ L +HSE+LA+A+GL+K   GT IR+ KNLRVCGDCH   K ISAI 
Sbjct: 531 SVLLDMDQQEKERQLFWHSERLALAYGLLKAVPGTTIRIVKNLRVCGDCHTVLKLISAIT 590

Query: 520 KREIIVRDTTRFHHFKDGTCSCGDYW 545
            REI VRD  R+HHFKDG CSC D+W
Sbjct: 591 SREIYVRDVKRYHHFKDGKCSCNDFW 616



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 67/286 (23%), Positives = 140/286 (48%), Gaps = 18/286 (6%)

Query: 5   TTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILL--NSDDVVAAFDFF 62
           ++++W ++++G+A+   KL +A ELF + P  ++ ++  ++S ++   N++D +  F   
Sbjct: 176 SSISWTAMISGYARSGRKL-EALELFRESPFKNLYAWTALISGLVQSGNANDALYLFVEM 234

Query: 63  QR--LPIKDTASWNTMISGFVQK--KNMAKARDLFLAMPEKNSVSW--SAMISGYIECGQ 116
           +R  + I D    ++++        + + K     +      S  +  +A++  Y +C  
Sbjct: 235 RREGVSIADPLVLSSVVGACANSAVRELGKQVHCVVITLGYESCLFISNALVDMYAKCSD 294

Query: 117 LDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLS 176
           +  A  +F     K VV+WT++I G  + G      AE+ L L   M+  G++PN  +  
Sbjct: 295 VVAAKYIFCEMRRKDVVSWTSIIVGTAQHGL-----AEEALTLYDDMVLAGVKPNEVTFV 349

Query: 177 SVLLGCSHLSSLQLGKQVHQ-LVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR 235
            ++  CSH+  +  G+ + + +V    +       T L+ ++ + G L++A  L   +  
Sbjct: 350 GLIYACSHVGLVSKGRALFKSMVEDFGIRPSLQHYTCLLDLFSRSGHLDEAENLIRTMPV 409

Query: 236 K-DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 280
           K D  TW A++S    HG  + A+R+ D + D  +KP+  +   LL
Sbjct: 410 KPDEPTWAALLSACKHHGNTKMAVRIADHLLD--LKPEDPSSYILL 453



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/223 (26%), Positives = 101/223 (45%), Gaps = 39/223 (17%)

Query: 106 AMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIG 165
            +I  Y +CG L  A++LF   P +  VAW  ++S       + +      L +L     
Sbjct: 48  TLIDAYGKCGLLKDALKLFDALPQQDHVAWATVLSA-CNLSNLPHKAFSISLPILHE--- 103

Query: 166 LGIRPNASSLSSVLLGCSHLSS--LQLGKQVHQLVFKSPLCKD----------------- 206
            G++P+    SS++  C++L S  ++LGKQ+H     SP  +D                 
Sbjct: 104 -GLQPDHFVFSSLIKACANLGSVHVKLGKQLHARFLLSPFFEDDVVKSSLVDMYAKFELP 162

Query: 207 --------------TTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHG 252
                         + + T +IS Y + G   +A +LF E   K++  W A+ISG  Q G
Sbjct: 163 DYGRAVFDSIFELSSISWTAMISGYARSGRKLEALELFRESPFKNLYAWTALISGLVQSG 222

Query: 253 KGEKALRLFDKMKDEGMK-PDSITFVALLLACNHAGLVDLGIQ 294
               AL LF +M+ EG+   D +   +++ AC ++ + +LG Q
Sbjct: 223 NANDALYLFVEMRREGVSIADPLVLSSVVGACANSAVRELGKQ 265



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/181 (28%), Positives = 83/181 (45%), Gaps = 32/181 (17%)

Query: 190 LGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYA 249
           + K++H  + KS L         LI  Y KCG L+DA KLF  + ++D V W  ++S   
Sbjct: 26  IAKKLHAQIIKSGLNHHHPFPKTLIDAYGKCGLLKDALKLFDALPQQDHVAWATVLSACN 85

Query: 250 QHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGL--VDLGIQ---------YFD- 297
                 KA  +   +  EG++PD   F +L+ AC + G   V LG Q         +F+ 
Sbjct: 86  LSNLPHKAFSISLPILHEGLQPDHFVFSSLIKACANLGSVHVKLGKQLHARFLLSPFFED 145

Query: 298 -----SMVNDYGIAAKPDH---------------YTCMVDLLGRAGKLVEAVDLIKKMPF 337
                S+V+ Y     PD+               +T M+    R+G+ +EA++L ++ PF
Sbjct: 146 DVVKSSLVDMYAKFELPDYGRAVFDSIFELSSISWTAMISGYARSGRKLEALELFRESPF 205

Query: 338 K 338
           K
Sbjct: 206 K 206


>gi|413944176|gb|AFW76825.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 823

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 208/537 (38%), Positives = 300/537 (55%), Gaps = 23/537 (4%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G ++DA  +F+ IP  DV+ ++ ++S    +  +   AF+ F R+           +SG 
Sbjct: 298 GDIEDAHAIFEMIPHDDVILWSFLISRYAQSCQNE-QAFEMFLRMMRSFVVPNEFSLSGV 356

Query: 81  VQKKNMAKARDLFLAMPEK------------NSVSWSAMISGYIECGQLDKAVELFKVAP 128
           +Q    A A   FL + E+                 +A++  Y +C  ++ ++E+F    
Sbjct: 357 LQ----ACANIAFLELGEQIHNLAIKLGYESELFVGNALMDMYAKCRNMENSLEIFSSLQ 412

Query: 129 VKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSL 188
             + V+W  +I GY + G+     AED L +   M    +     + SSVL  C++ SS+
Sbjct: 413 DANEVSWNTIIVGYCQSGF-----AEDALSVFHEMRAAHMLSTQVTFSSVLRACANTSSI 467

Query: 189 QLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGY 248
           +   Q+H L+ KS    DT     LI  Y KCG + DA K+F  I   DVV+WN++IS Y
Sbjct: 468 KHAVQIHSLIEKSTFNNDTIVCNSLIDTYAKCGFIRDALKVFESIVECDVVSWNSIISAY 527

Query: 249 AQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK 308
           A HG+   AL LFD+M    +K + +TFV+LL  C   GLV+ G+  F+SM+ D+ I   
Sbjct: 528 ALHGRATNALELFDRMNKSDIKANDVTFVSLLSVCGSTGLVNQGLWLFNSMMMDHRIKPS 587

Query: 309 PDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLF 368
            +HYTC+V LLGRAG+L +A+  I  +P  P P ++  LLS+C VHK + L  +AA  + 
Sbjct: 588 MEHYTCIVRLLGRAGRLTDALKFIGDIPSTPSPMVWRALLSSCVVHKNVALGRYAAEKVL 647

Query: 369 NLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSG 428
           ++ P +    YV L+N+YAA    D+VA  R SM+   V K  G SW+E+   VH F  G
Sbjct: 648 DIEPHDET-TYVLLSNMYAAAGILDEVALWRKSMRNVGVKKEAGLSWVEIKGEVHAFSVG 706

Query: 429 DRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLI 488
              HP++  I+  L+ L  +    GYVPD+   LH V EE K ++L  HSE+LA+A+GL 
Sbjct: 707 SADHPDMRIINAMLEWLNLKASREGYVPDINVVLHDVDEEEKARMLWVHSERLALAYGLS 766

Query: 489 KVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
             P G PIR+ KNLR C DCH   K IS I +REIIVRD  RFHHF++G CSCGDYW
Sbjct: 767 MTPPGHPIRIMKNLRSCLDCHTMFKVISKIVQREIIVRDINRFHHFEEGICSCGDYW 823



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 85/292 (29%), Positives = 135/292 (46%), Gaps = 14/292 (4%)

Query: 11  SVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDT 70
           +VL  F  + G L  A+ LFD +P+ + VS+  ++    L  +    A + F+RL  +  
Sbjct: 86  NVLLNFYAKLGPLATARRLFDGMPERNRVSFVTLMQGYALRGE-FEEALELFRRLQREGH 144

Query: 71  ASWNTMISGFVQKKNMAKARDLFLAMP--------EKNSVSWSAMISGYIECGQLDKAVE 122
              + +++  ++      A  L   +         ++N+   +A+I  Y  CG +  A  
Sbjct: 145 EVNHFVLTTILKVLVTMDAPGLACGIHACACKLGHDRNAFVGTALIDAYSLCGAVCHARC 204

Query: 123 LFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGC 182
           +F     K  V WTAM+S Y      EN   E  L     M   G +PN   L+S L   
Sbjct: 205 VFDGIVGKDAVTWTAMVSCYS-----ENDIPEYALNTFSKMRMTGFKPNPFVLTSALKAA 259

Query: 183 SHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWN 242
             LSS  LGK +H    K+    +      L+ MY KCGD+EDA  +F  I   DV+ W+
Sbjct: 260 VCLSSALLGKGIHGCSVKTLYDTEPHVGGALLDMYAKCGDIEDAHAIFEMIPHDDVILWS 319

Query: 243 AMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ 294
            +IS YAQ  + E+A  +F +M    + P+  +   +L AC +   ++LG Q
Sbjct: 320 FLISRYAQSCQNEQAFEMFLRMMRSFVVPNEFSLSGVLQACANIAFLELGEQ 371



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 70/270 (25%), Positives = 117/270 (43%), Gaps = 41/270 (15%)

Query: 69  DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAP 128
           DT   N +++ + +   +A AR LF  MPE+N VS+  ++ GY   G+ ++A+ELF+   
Sbjct: 81  DTFCANVLLNFYAKLGPLATARRLFDGMPERNRVSFVTLMQGYALRGEFEEALELFR--- 137

Query: 129 VKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSL 188
                                        +L R     G   N   L+++L     + + 
Sbjct: 138 -----------------------------RLQRE----GHEVNHFVLTTILKVLVTMDAP 164

Query: 189 QLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGY 248
            L   +H    K    ++    T LI  Y  CG +  A  +F  I  KD VTW AM+S Y
Sbjct: 165 GLACGIHACACKLGHDRNAFVGTALIDAYSLCGAVCHARCVFDGIVGKDAVTWTAMVSCY 224

Query: 249 AQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA--CNHAGLVDLGIQYFDSMVNDYGIA 306
           +++   E AL  F KM+  G KP+     + L A  C  + L+  GI +  S+   Y   
Sbjct: 225 SENDIPEYALNTFSKMRMTGFKPNPFVLTSALKAAVCLSSALLGKGI-HGCSVKTLYD-- 281

Query: 307 AKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 336
            +P     ++D+  + G + +A  + + +P
Sbjct: 282 TEPHVGGALLDMYAKCGDIEDAHAIFEMIP 311



 Score = 48.1 bits (113), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 61/261 (23%), Positives = 110/261 (42%), Gaps = 47/261 (18%)

Query: 130 KSVVAWTAMISGYMKFGYVEN---SWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLS 186
           +S++   + I+G +      N    W +D L  L +      + ++ + +  L  C    
Sbjct: 5   RSLLPTFSQINGLLSRNLAANEALQWLDDELASLALP-----KLDSYACARFLQRCIARG 59

Query: 187 SLQLGKQVH-QLVFKSPLCK-DTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAM 244
             + G+ VH ++V +  + + DT     L++ Y K G L  A +LF  +  ++ V++  +
Sbjct: 60  DARAGRAVHARVVQRGGVAQLDTFCANVLLNFYAKLGPLATARRLFDGMPERNRVSFVTL 119

Query: 245 ISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL----------LACN-HAGLVDLGI 293
           + GYA  G+ E+AL LF +++ EG + +      +L          LAC  HA    LG 
Sbjct: 120 MQGYALRGEFEEALELFRRLQREGHEVNHFVLTTILKVLVTMDAPGLACGIHACACKLGH 179

Query: 294 Q----YFDSMVNDYGIAAKPDHYTCMVDLLGRAGK-------LVE----------AVDLI 332
                   ++++ Y +     H  C+ D  G  GK       +V           A++  
Sbjct: 180 DRNAFVGTALIDAYSLCGAVCHARCVFD--GIVGKDAVTWTAMVSCYSENDIPEYALNTF 237

Query: 333 KKM---PFKPQPAIFGTLLSA 350
            KM    FKP P +  + L A
Sbjct: 238 SKMRMTGFKPNPFVLTSALKA 258


>gi|356555295|ref|XP_003545969.1| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Glycine max]
          Length = 626

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 206/535 (38%), Positives = 309/535 (57%), Gaps = 18/535 (3%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTM-ISG 79
           G   DAQ+LFD++P  D +S+N ++S       D+      F  +  +    WN + +  
Sbjct: 100 GSTPDAQKLFDEMPHKDSISWNSLVSG-FSRIGDLGNCLRVFYTMRYEMAFEWNELTLLS 158

Query: 80  FVQKKNMAKARD---------LFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVK 130
            +     AKARD         + L M  +  V  +A I+ Y + G +D A +LF   P +
Sbjct: 159 VISACAFAKARDEGWCLHCCAVKLGMELEVKVV-NAFINMYGKFGCVDSAFKLFWALPEQ 217

Query: 131 SVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQL 190
           ++V+W +M++ +      +N    + +    MM   G+ P+ +++ S+L  C  L   +L
Sbjct: 218 NMVSWNSMLAVW-----TQNGIPNEAVNYFNMMRVNGLFPDEATILSLLQACEKLPLGRL 272

Query: 191 GKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQ 250
            + +H ++F   L ++ T  T L+++Y K G L  + K+F EI + D V   AM++GYA 
Sbjct: 273 VEAIHGVIFTCGLNENITIATTLLNLYSKLGRLNVSHKVFAEISKPDKVALTAMLAGYAM 332

Query: 251 HGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPD 310
           HG G++A+  F     EGMKPD +TF  LL AC+H+GLV  G  YF  M + Y +  + D
Sbjct: 333 HGHGKEAIEFFKWTVREGMKPDHVTFTHLLSACSHSGLVMDGKYYFQIMSDFYRVQPQLD 392

Query: 311 HYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNL 370
           HY+CMVDLLGR G L +A  LIK MP +P   ++G LL ACRV++ ++L + AA NL  L
Sbjct: 393 HYSCMVDLLGRCGMLNDAYRLIKSMPLEPNSGVWGALLGACRVYRNINLGKEAAENLIAL 452

Query: 371 NPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDR 430
           NP++    Y+ L+NIY+A   W D +++R  MK    ++  G S+IE G  +H F   D 
Sbjct: 453 NPSDPRN-YIMLSNIYSAAGLWSDASKVRALMKTKVFIRNAGCSFIEHGNKIHRFVVDDY 511

Query: 431 VHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKV 490
            HP+   IH KL+E+ +++K  G+V + E  LH V EEVK  ++  HSEK+A+AFGL+  
Sbjct: 512 SHPDSDKIHRKLEEIMRKIKEVGFVSETESILHDVDEEVKTDMINKHSEKIALAFGLLVS 571

Query: 491 PLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
               P+ + KNLR+C DCH   K++S IEKR II+RD+ RFHHF DG CSC DYW
Sbjct: 572 NADMPLVIIKNLRICLDCHNTAKFVSLIEKRTIIIRDSKRFHHFSDGLCSCADYW 626



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 72/279 (25%), Positives = 123/279 (44%), Gaps = 39/279 (13%)

Query: 107 MISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMM-IG 165
           ++S Y+  G    A +LF   P K  ++W +++SG+ + G + N      L++   M   
Sbjct: 92  LVSCYLNMGSTPDAQKLFDEMPHKDSISWNSLVSGFSRIGDLGNC-----LRVFYTMRYE 146

Query: 166 LGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLED 225
           +    N  +L SV+  C+   +   G  +H    K  +  +   +   I+MY K G ++ 
Sbjct: 147 MAFEWNELTLLSVISACAFAKARDEGWCLHCCAVKLGMELEVKVVNAFINMYGKFGCVDS 206

Query: 226 ACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNH 285
           A KLF  +  +++V+WN+M++ + Q+G   +A+  F+ M+  G+ PD  T ++LL AC  
Sbjct: 207 AFKLFWALPEQNMVSWNSMLAVWTQNGIPNEAVNYFNMMRVNGLFPDEATILSLLQACEK 266

Query: 286 AGLVDL-----GIQYFDSMVNDYGIA-----------------------AKPDHYTCMVD 317
             L  L     G+ +   +  +  IA                       +KPD       
Sbjct: 267 LPLGRLVEAIHGVIFTCGLNENITIATTLLNLYSKLGRLNVSHKVFAEISKPDKVALTAM 326

Query: 318 LLGRA--GKLVEAVDLIK---KMPFKPQPAIFGTLLSAC 351
           L G A  G   EA++  K   +   KP    F  LLSAC
Sbjct: 327 LAGYAMHGHGKEAIEFFKWTVREGMKPDHVTFTHLLSAC 365



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 55/102 (53%), Gaps = 1/102 (0%)

Query: 192 KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQH 251
           + +H  V KS   +D      L+S Y   G   DA KLF E+  KD ++WN+++SG+++ 
Sbjct: 71  RVIHARVIKSLDYRDGFIGDQLVSCYLNMGSTPDAQKLFDEMPHKDSISWNSLVSGFSRI 130

Query: 252 GKGEKALRLFDKMKDE-GMKPDSITFVALLLACNHAGLVDLG 292
           G     LR+F  M+ E   + + +T ++++ AC  A   D G
Sbjct: 131 GDLGNCLRVFYTMRYEMAFEWNELTLLSVISACAFAKARDEG 172


>gi|356502930|ref|XP_003520267.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Glycine max]
          Length = 780

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 216/560 (38%), Positives = 308/560 (55%), Gaps = 28/560 (5%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDA-----QELFDKIPQPDVVSYNIMLSCILLNSD-- 53
           M  K  V+WN+++  FA   G L D      QE+  K  +P+V++   +LS      D  
Sbjct: 234 MPGKDVVSWNAMINAFA--LGGLPDKALLLFQEMEMKDVKPNVITMVSVLSACAKKIDLE 291

Query: 54  ------DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAM 107
                   +    F + L +      N M+  +V+   +  A+DLF  M EK+ VSW+ M
Sbjct: 292 FGRWICSYIENNGFTEHLILN-----NAMLDMYVKCGCINDAKDLFNKMSEKDIVSWTTM 346

Query: 108 ISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLR-MMIGL 166
           + G+ + G  D+A  +F   P K   AW A+IS Y      +N      L L   M +  
Sbjct: 347 LDGHAKLGNYDEAHCIFDAMPHKWTAAWNALISAYE-----QNGKPRVALSLFHEMQLSK 401

Query: 167 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 226
             +P+  +L   L   + L ++  G  +H  + K  +  +    T L+ MY KCG+L  A
Sbjct: 402 DAKPDEVTLICALCASAQLGAIDFGHWIHVYIKKHDINLNCHLATSLLDMYAKCGNLNKA 461

Query: 227 CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHA 286
            ++F  ++RKDV  W+AMI   A +G+G+ AL LF  M +  +KP+++TF  +L ACNHA
Sbjct: 462 MEVFHAVERKDVYVWSAMIGALAMYGQGKAALDLFSSMLEAYIKPNAVTFTNILCACNHA 521

Query: 287 GLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGT 346
           GLV+ G Q F+ M   YGI  +  HY C+VD+ GRAG L +A   I+KMP  P  A++G 
Sbjct: 522 GLVNEGEQLFEQMEPLYGIVPQIQHYVCVVDIFGRAGLLEKAASFIEKMPIPPTAAVWGA 581

Query: 347 LLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENN 406
           LL AC  H  ++LAE A  NL  L P N  G +V L+NIYA    W+ V+ +R  M++++
Sbjct: 582 LLGACSRHGNVELAELAYQNLLELEPCN-HGAFVLLSNIYAKAGDWEKVSNLRKLMRDSD 640

Query: 407 VVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVG 466
           V K P  S I+V  +VHEF  GD  HP    I+ KL E+ ++ K  GY PD+   L    
Sbjct: 641 VKKEPWCSSIDVNGIVHEFLVGDNSHPFSQKIYSKLDEISEKFKPIGYKPDMSNLLQLSE 700

Query: 467 EE-VKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIV 525
           E+ + EQ L  HSEKLAIAFGLI      PIR+ KN+R+CGDCH   K +S +  R+I++
Sbjct: 701 EDNLMEQSLNVHSEKLAIAFGLISTASSQPIRIVKNIRICGDCHAFAKLVSQLYDRDILL 760

Query: 526 RDTTRFHHFKDGTCSCGDYW 545
           RD  RFHHF+ G CSC DYW
Sbjct: 761 RDRYRFHHFRGGKCSCLDYW 780



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 88/364 (24%), Positives = 155/364 (42%), Gaps = 68/364 (18%)

Query: 26  AQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRL------PIKDTASW------ 73
           A+ +F++IPQP++  +N ++     +SD   +   F   L      P K T  +      
Sbjct: 125 AKNVFNQIPQPNLYCWNTLIRGYASSSDPTQSFLIFLHMLHSCSEFPNKFTFPFLFKAAS 184

Query: 74  -------NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKV 126
                   +++ G V K +++   DLF+          +++I+ Y   G  D A  +F  
Sbjct: 185 RLKVLHLGSVLHGMVIKASLSS--DLFIL---------NSLINFYGSSGAPDLAHRVFTN 233

Query: 127 APVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLS 186
            P K VV+W AMI+ +   G       +  L L + M    ++PN  ++ SVL  C+   
Sbjct: 234 MPGKDVVSWNAMINAFALGGL-----PDKALLLFQEMEMKDVKPNVITMVSVLSACAKKI 288

Query: 187 SLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVT------ 240
            L+ G+ +   +  +   +       ++ MY KCG + DA  LF ++  KD+V+      
Sbjct: 289 DLEFGRWICSYIENNGFTEHLILNNAMLDMYVKCGCINDAKDLFNKMSEKDIVSWTTMLD 348

Query: 241 -------------------------WNAMISGYAQHGKGEKALRLFDKMK-DEGMKPDSI 274
                                    WNA+IS Y Q+GK   AL LF +M+  +  KPD +
Sbjct: 349 GHAKLGNYDEAHCIFDAMPHKWTAAWNALISAYEQNGKPRVALSLFHEMQLSKDAKPDEV 408

Query: 275 TFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKK 334
           T +  L A    G +D G  +    +  + I       T ++D+  + G L +A+++   
Sbjct: 409 TLICALCASAQLGAIDFG-HWIHVYIKKHDINLNCHLATSLLDMYAKCGNLNKAMEVFHA 467

Query: 335 MPFK 338
           +  K
Sbjct: 468 VERK 471



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 73/237 (30%), Positives = 113/237 (47%), Gaps = 9/237 (3%)

Query: 105 SAMISGYI--ECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRM 162
           S +++ Y    C  L  A  +F   P  ++  W  +I GY        S+    L  L M
Sbjct: 108 SKLLTAYAISSCSCLIYAKNVFNQIPQPNLYCWNTLIRGYASSSDPTQSF----LIFLHM 163

Query: 163 MIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGD 222
           +      PN  +   +    S L  L LG  +H +V K+ L  D   L  LI+ Y   G 
Sbjct: 164 LHSCSEFPNKFTFPFLFKAASRLKVLHLGSVLHGMVIKASLSSDLFILNSLINFYGSSGA 223

Query: 223 LEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA 282
            + A ++F  +  KDVV+WNAMI+ +A  G  +KAL LF +M+ + +KP+ IT V++L A
Sbjct: 224 PDLAHRVFTNMPGKDVVSWNAMINAFALGGLPDKALLLFQEMEMKDVKPNVITMVSVLSA 283

Query: 283 CNHAGLVDLGI-QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 338
           C  A  +DL   ++  S + + G          M+D+  + G + +A DL  KM  K
Sbjct: 284 C--AKKIDLEFGRWICSYIENNGFTEHLILNNAMLDMYVKCGCINDAKDLFNKMSEK 338


>gi|449527343|ref|XP_004170671.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g24000, mitochondrial-like [Cucumis sativus]
          Length = 677

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 213/567 (37%), Positives = 318/567 (56%), Gaps = 52/567 (9%)

Query: 22  KLKDAQELFDKIP----QPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMI 77
           KLK  + +   I     + D+V  N +L+ +      +  A D F ++P KD  SW  +I
Sbjct: 120 KLKQGRAIHAHIQSSTFEDDLVLLNFILN-MYAKCGSLEEAQDLFDKMPTKDMVSWTVLI 178

Query: 78  SGFVQKKNMAKARDLFLAM------PEKNSVS---------------------------- 103
           SG+ Q    ++A  LF  M      P + ++S                            
Sbjct: 179 SGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKASGTGPSDHHGRQLHAFSLKYGYD 238

Query: 104 -----WSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLK 158
                 S+++  Y     + +A  +F     K+VV+W A+I+G+ + G       E  ++
Sbjct: 239 MNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALIAGHARKGE-----GEHVMR 293

Query: 159 LLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYC 218
           L   M+  G  P   + SSVL  C+   SL+ GK VH  V KS           LI MY 
Sbjct: 294 LFXQMLRQGFEPTHFTYSSVL-ACASSGSLEQGKWVHAHVIKSGGQPIAYIGNTLIDMYA 352

Query: 219 KCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVA 278
           K G ++DA K+F  + ++D+V+WN++ISGYAQHG G +AL+LF++M    ++P+ ITF++
Sbjct: 353 KSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEALQLFEQMLKAKVQPNEITFLS 412

Query: 279 LLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 338
           +L AC+H+GL+D G QY+  ++  + I A+  H+  +VDLLGRAG+L EA   I++MP K
Sbjct: 413 VLTACSHSGLLDEG-QYYFELMKKHKIEAQVAHHVTVVDLLGRAGRLNEANKFIEEMPIK 471

Query: 339 PQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARI 398
           P  A++G LL ACR+HK +DL  +AA  +F L+P ++ G +V L+NIYA+  +  D A++
Sbjct: 472 PTAAVWGALLGACRMHKNMDLGVYAAEQIFELDPHDS-GPHVLLSNIYASAGRLSDAAKV 530

Query: 399 RLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDL 458
           R  MKE+ V K P  SW+E+   VH F + D  HP    I    +++  ++K  GYVPD 
Sbjct: 531 RKMMKESGVKKEPACSWVEIENEVHVFVANDDSHPMREEIQRMWEKISGKIKEIGYVPDT 590

Query: 459 EFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAI 518
              L  + ++ +E  L +HSEKLA+AF ++K P G  IR+ KN+R+CGDCH A K+ S +
Sbjct: 591 SHVLFFMNQQDRELKLQYHSEKLALAFAVLKTPPGLTIRIKKNIRICGDCHSAFKFASRV 650

Query: 519 EKREIIVRDTTRFHHFKDGTCSCGDYW 545
             REIIVRDT RFHHF  G CSC DYW
Sbjct: 651 LGREIIVRDTNRFHHFLHGMCSCRDYW 677



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 82/161 (50%), Gaps = 1/161 (0%)

Query: 168 IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC 227
           + P  +  S +L  C++L  L+ G+ +H  +  S    D   L  +++MY KCG LE+A 
Sbjct: 101 LEPERTLYSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCGSLEEAQ 160

Query: 228 KLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG 287
            LF ++  KD+V+W  +ISGY+Q G+  +AL LF KM   G +P+  T  +LL A    G
Sbjct: 161 DLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKASG-TG 219

Query: 288 LVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEA 328
             D   +   +    YG        + ++D+  R   + EA
Sbjct: 220 PSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREA 260



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 74/358 (20%), Positives = 140/358 (39%), Gaps = 96/358 (26%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIP----QPDVVSYNIMLSCILLNSDDVV 56
           +  K  V+WN+++AG A+ +G+ +    LF ++     +P   +Y+ +L+C    S   +
Sbjct: 267 LAAKNVVSWNALIAGHAR-KGEGEHVMRLFXQMLRQGFEPTHFTYSSVLACA---SSGSL 322

Query: 57  AAFDFFQRLPIKDTAS-----WNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGY 111
               +     IK          NT+I  + +  ++  A+ +F  + +++ VSW+++ISGY
Sbjct: 323 EQGKWVHAHVIKSGGQPIAYIGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGY 382

Query: 112 IECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPN 171
            + G   +A++LF+                                     M+   ++PN
Sbjct: 383 AQHGLGAEALQLFE------------------------------------QMLKAKVQPN 406

Query: 172 ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFL 231
             +  SVL  CSH   L  G+   +L+ K  +         ++ +  + G L +A K   
Sbjct: 407 EITFLSVLTACSHSGLLDEGQYYFELMKKHKIEAQVAHHVTVVDLLGRAGRLNEANKFIE 466

Query: 232 EIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDL 291
           E+                                   +KP +  + ALL AC     +DL
Sbjct: 467 EMP----------------------------------IKPTAAVWGALLGACRMHKNMDL 492

Query: 292 GI----QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP---FKPQPA 342
           G+    Q F+   +D G       +  + ++   AG+L +A  + K M     K +PA
Sbjct: 493 GVYAAEQIFELDPHDSGP------HVLLSNIYASAGRLSDAAKVRKMMKESGVKKEPA 544


>gi|356560286|ref|XP_003548424.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
           mitochondrial-like [Glycine max]
          Length = 911

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 198/493 (40%), Positives = 292/493 (59%), Gaps = 16/493 (3%)

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISGYIECGQL 117
           F     K+  +WN++ISG+  K     A  L   M E+    + V+W++++SGY   G+ 
Sbjct: 426 FHHTKNKNICAWNSLISGYTYKGLFDNAEKLLNQMKEEGIKPDLVTWNSLVSGYSMSGRS 485

Query: 118 DKAVELFK----VAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNAS 173
           ++A+ +      +    +VV+WTAMISG       +N    D L+    M    ++PN++
Sbjct: 486 EEALAVINRIKSLGLTPNVVSWTAMISGC-----CQNENYMDALQFFSQMQEENVKPNST 540

Query: 174 SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI 233
           ++ ++L  C+  S L++G+++H    +     D    T LI MY K G L+ A ++F  I
Sbjct: 541 TICTLLRACAGSSLLKIGEEIHCFSMRHGFLDDIYIATALIDMYGKGGKLKVAHEVFRNI 600

Query: 234 QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGI 293
           + K +  WN M+ GYA +G GE+   LFD+M+  G++PD+ITF ALL  C ++GLV  G 
Sbjct: 601 KEKTLPCWNCMMMGYAIYGHGEEVFTLFDEMRKTGVRPDAITFTALLSGCKNSGLVMDGW 660

Query: 294 QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRV 353
           +YFDSM  DY I    +HY+CMVDLLG+AG L EA+D I  +P K   +I+G +L+ACR+
Sbjct: 661 KYFDSMKTDYNINPTIEHYSCMVDLLGKAGFLDEALDFIHAVPQKADASIWGAVLAACRL 720

Query: 354 HKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPG- 412
           HK + +AE AA NL  L P N+A  Y  + NIY+   +W DV R++ SM     VK+P  
Sbjct: 721 HKDIKIAEIAARNLLRLEPYNSAN-YALMMNIYSTFDRWGDVERLKESMTALG-VKIPNV 778

Query: 413 YSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQ 472
           +SWI+V   +H F +  + HPE   I+ +L +L   +K  GYV D+      + +  KE+
Sbjct: 779 WSWIQVKQTIHVFSTEGKSHPEEGEIYFELYQLISEIKKLGYVLDINCVHQNIDDSEKEK 838

Query: 473 LLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFH 532
           +LL H+EKLA+ +GL+K   G+PIRV KN R+C DCH   KYIS    REI +RD  RFH
Sbjct: 839 VLLSHTEKLAMTYGLMKTKGGSPIRVVKNTRICHDCHTTAKYISLARNREIFLRDGGRFH 898

Query: 533 HFKDGTCSCGDYW 545
           HF +G CSC D W
Sbjct: 899 HFMNGECSCKDRW 911



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 92/369 (24%), Positives = 171/369 (46%), Gaps = 25/369 (6%)

Query: 9   WNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCIL--------LNSDDVVAAFD 60
           WN+++    +   K +DA ELF ++      + +  +  +L        LN    +  + 
Sbjct: 200 WNTIVMANLRSE-KWEDALELFRRMQSASAKATDGTIVKLLQACGKLRALNEGKQIHGYV 258

Query: 61  F-FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYI--EC--G 115
             F R  + +T+  N+++S + +   +  AR  F +  + NS SW+++IS Y   +C  G
Sbjct: 259 IRFGR--VSNTSICNSIVSMYSRNNRLELARVAFDSTEDHNSASWNSIISSYAVNDCLNG 316

Query: 116 QLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSL 175
             D   E+        ++ W +++SG++  G  EN      L   R +   G +P++ S+
Sbjct: 317 AWDLLQEMESSGVKPDIITWNSLLSGHLLQGSYENV-----LTNFRSLQSAGFKPDSCSI 371

Query: 176 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR 235
           +S L     L    LGK++H  + +S L  D    T L+  Y K   L+ A  +F   + 
Sbjct: 372 TSALQAVIGLGCFNLGKEIHGYIMRSKLEYDVYVCTSLVDKYIKNDCLDKAEVVFHHTKN 431

Query: 236 KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQY 295
           K++  WN++ISGY   G  + A +L ++MK+EG+KPD +T+ +L+   + +G  +  +  
Sbjct: 432 KNICAWNSLISGYTYKGLFDNAEKLLNQMKEEGIKPDLVTWNSLVSGYSMSGRSEEALAV 491

Query: 296 FDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP---FKPQPAIFGTLLSACR 352
            +  +   G+      +T M+    +    ++A+    +M     KP      TLL AC 
Sbjct: 492 INR-IKSLGLTPNVVSWTAMISGCCQNENYMDALQFFSQMQEENVKPNSTTICTLLRACA 550

Query: 353 VHKRLDLAE 361
               L + E
Sbjct: 551 GSSLLKIGE 559



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 59/251 (23%), Positives = 114/251 (45%), Gaps = 10/251 (3%)

Query: 80  FVQKKNMAKARDL---FLAMPEKNSVSW--SAMISGYIECGQLDKAVELFKVAPVKSVVA 134
           F + + +   R+L    + MP+K ++     +M+  Y++ G  + A ++F V   ++ + 
Sbjct: 38  FGEIRTLNSVRELHAQIIKMPKKRNLVTMDGSMMRNYLQFGDFESATKVFFVGFARNYLL 97

Query: 135 WTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQV 194
           W + I  +  FG      + + L + + +   G++ ++ +L+ VL  C  L  L LG +V
Sbjct: 98  WNSFIEEFASFG----GDSHEILAVFKELHDKGVKFDSKALTVVLKICLALMELWLGMEV 153

Query: 195 HQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKG 254
           H  + K     D      LI++Y K   ++ A ++F E   ++   WN ++    +  K 
Sbjct: 154 HACLVKRGFHVDVHLSCALINLYEKYLGIDGANQVFDETPLQEDFLWNTIVMANLRSEKW 213

Query: 255 EKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTC 314
           E AL LF +M+    K    T V LL AC     ++ G Q    ++  +G  +       
Sbjct: 214 EDALELFRRMQSASAKATDGTIVKLLQACGKLRALNEGKQIHGYVIR-FGRVSNTSICNS 272

Query: 315 MVDLLGRAGKL 325
           +V +  R  +L
Sbjct: 273 IVSMYSRNNRL 283


>gi|297819536|ref|XP_002877651.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323489|gb|EFH53910.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1217

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 208/486 (42%), Positives = 277/486 (56%), Gaps = 19/486 (3%)

Query: 68  KDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVE----- 122
           +D  SWN++++G+ Q +    A ++   M E   +S  A     +     +   E     
Sbjct: 205 RDVVSWNSLVAGYAQNQRFDDALEVCREM-ESVKISHDAGTMASLLPAVSNTTTENVMYV 263

Query: 123 ---LFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVL 179
               FK+   KS+V+W  MI  YMK     N+   + ++L   M   G  P+A S++SVL
Sbjct: 264 KDMFFKMGK-KSLVSWNVMIGVYMK-----NAMPVEAVELYSGMEADGFEPDAVSITSVL 317

Query: 180 LGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVV 239
             C   S+L LGK++H  + +  L  +      LI MY KCG L+ A  +F  ++ +DVV
Sbjct: 318 PACGDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLDRARDVFENMKSRDVV 377

Query: 240 TWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSM 299
           +W AMIS Y   G+G  A+ LF KM+D G+ PDSI FV  L AC+HAGL++ G   F  M
Sbjct: 378 SWTAMISAYGFSGRGCDAVALFSKMQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLM 437

Query: 300 VNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDL 359
            + Y I  + +H  CMVDLLGRAGK+ EA   I++MP +P   ++G LL ACRVH   D+
Sbjct: 438 TDHYKITPRLEHLACMVDLLGRAGKVKEAYKFIQEMPMEPNERVWGALLGACRVHSNTDI 497

Query: 360 AEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVG 419
              AA  LF L P   +G YV L+NIYA   +W++V  IR  MK   + K PG S +EV 
Sbjct: 498 GLLAADKLFQLAPEQ-SGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVN 556

Query: 420 TVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSE 479
            ++H F  GDR HP+   I+ +L  L K+MK  GYVPD E ALH V EE KE  L  HSE
Sbjct: 557 RIIHTFLVGDRSHPQSAEIYRELDVLVKKMKELGYVPDSESALHDVEEEDKETHLAVHSE 616

Query: 480 KLAIAFGLIKVP---LGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKD 536
           KLAI F L+          IR+ KNLR+CGDCH A K IS I  REII+RDT RFH F+ 
Sbjct: 617 KLAIVFALMNTEEEDSNNAIRITKNLRICGDCHVAAKLISQITSREIIIRDTNRFHVFRF 676

Query: 537 GTCSCG 542
           G CSC 
Sbjct: 677 GVCSCA 682



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 67/255 (26%), Positives = 121/255 (47%), Gaps = 11/255 (4%)

Query: 100 NSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKL 159
           NS     ++  Y     +  A ++F   P ++V+    MI  Y     V N +  +G+++
Sbjct: 74  NSSLGVKLMRAYASLKDVATARKVFDEIPERNVIIINVMIRSY-----VNNGFYREGIQV 128

Query: 160 LRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCK 219
              M    ++P+  +   VL  CS   ++ +GK++H    K  L         L+SMY K
Sbjct: 129 FGTMCSCHVKPDHYTFPCVLKACSCSGNIVIGKKIHGSATKVGLSSTLFVGNGLVSMYGK 188

Query: 220 CGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVAL 279
           CG L +A  +  E+ R+DVV+WN++++GYAQ+ + + AL +  +M+   +  D+ T  +L
Sbjct: 189 CGFLSEARLVLDEMSRRDVVSWNSLVAGYAQNQRFDDALEVCREMESVKISHDAGTMASL 248

Query: 280 LLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP--- 336
           L A ++    +  + Y   M    G  +    +  M+ +  +    VEAV+L   M    
Sbjct: 249 LPAVSNTTTEN--VMYVKDMFFKMGKKSLVS-WNVMIGVYMKNAMPVEAVELYSGMEADG 305

Query: 337 FKPQPAIFGTLLSAC 351
           F+P      ++L AC
Sbjct: 306 FEPDAVSITSVLPAC 320



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 94/410 (22%), Positives = 169/410 (41%), Gaps = 98/410 (23%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCIL-----LNSDDV 55
           M+ +  V+WNS++AG+A Q  +  DA E+  ++    +      ++ +L       +++V
Sbjct: 202 MSRRDVVSWNSLVAGYA-QNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTENV 260

Query: 56  VAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAM---- 107
           +   D F ++  K   SWN MI  +++     +A +L+  M     E ++VS +++    
Sbjct: 261 MYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSGMEADGFEPDAVSITSVLPAC 320

Query: 108 -----------ISGYIE--------------------CGQLDKAVELFKVAPVKSVVAWT 136
                      I GYIE                    CG LD+A ++F+    + VV+WT
Sbjct: 321 GDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLDRARDVFENMKSRDVVSWT 380

Query: 137 AMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQ 196
           AMIS Y   G+  +    D + L   M   G+ P++ +  + L  CSH   L+ G+   +
Sbjct: 381 AMISAY---GF--SGRGCDAVALFSKMQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFK 435

Query: 197 LVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEK 256
           L+       D   +TP +           AC                M+    + GK ++
Sbjct: 436 LM------TDHYKITPRLEHL--------AC----------------MVDLLGRAGKVKE 465

Query: 257 ALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPD-HYTCM 315
           A +   +M    M+P+   + ALL AC      D+G+   D +   + +A +   +Y  +
Sbjct: 466 AYKFIQEMP---MEPNERVWGALLGACRVHSNTDIGLLAADKL---FQLAPEQSGYYVLL 519

Query: 316 VDLLGRAGKLVEAV---DLIKKMPFKPQPA--------IFGTLLSACRVH 354
            ++  +AG+  E     +++K    K  P         I  T L   R H
Sbjct: 520 SNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVGDRSH 569



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 46/195 (23%), Positives = 91/195 (46%), Gaps = 2/195 (1%)

Query: 188 LQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISG 247
           L+  + VH  +    L  +++    L+  Y    D+  A K+F EI  ++V+  N MI  
Sbjct: 56  LKTLRTVHSRIISEDLRYNSSLGVKLMRAYASLKDVATARKVFDEIPERNVIIINVMIRS 115

Query: 248 YAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAA 307
           Y  +G   + +++F  M    +KPD  TF  +L AC+ +G + +G +   S     G+++
Sbjct: 116 YVNNGFYREGIQVFGTMCSCHVKPDHYTFPCVLKACSCSGNIVIGKKIHGSATK-VGLSS 174

Query: 308 KPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNL 367
                  +V + G+ G L EA  ++ +M  +     + +L++    ++R D A      +
Sbjct: 175 TLFVGNGLVSMYGKCGFLSEARLVLDEMS-RRDVVSWNSLVAGYAQNQRFDDALEVCREM 233

Query: 368 FNLNPANAAGCYVQL 382
            ++  ++ AG    L
Sbjct: 234 ESVKISHDAGTMASL 248


>gi|296088738|emb|CBI38188.3| unnamed protein product [Vitis vinifera]
          Length = 744

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 211/564 (37%), Positives = 310/564 (54%), Gaps = 46/564 (8%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G++  A+E+FD I   D+VS+  M++C   N D    A   F ++ +      N   +  
Sbjct: 188 GRVDVAREVFDGILYKDMVSWTGMVTCFAEN-DCFKEALKLFSQMRMVGFKPNNFTFASV 246

Query: 81  VQKKNMAKARDL--------FLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSV 132
            +     +A D+          +  E +     A++  Y + G +D A   F+  P K V
Sbjct: 247 FKACLGLEAFDVGKSVHGCALKSRYELDLYVGVALLDLYTKSGDIDDARRAFEEIPKKDV 306

Query: 133 VAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGK 192
           + W+ MI+ Y      ++  +++ +++   M    + PN  + +SVL  C+ +  L LG 
Sbjct: 307 IPWSFMIARY-----AQSDQSKEAVEMFFQMRQALVLPNQFTFASVLQACATMEGLNLGN 361

Query: 193 QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHG 252
           Q+H  V K  L  D      L+ +Y KCG +E++ +LF E   ++ VTWN +I G+ Q G
Sbjct: 362 QIHCHVIKIGLHSDVFVSNALMDVYAKCGRMENSMELFAESPHRNDVTWNTVIVGHVQLG 421

Query: 253 KGEKALRLFDKMKDE-------------------------------GMKPDSITFVALLL 281
            GEKALRLF  M +                                 +KPD +TFV +L 
Sbjct: 422 DGEKALRLFLNMLEYRVQATEVTYSSALRACASLAALEPGLQIHSLTVKPDKLTFVGVLS 481

Query: 282 ACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQP 341
           AC +AGL+D G  YF SM+ D+GI    +HYTCMV LLGR G L +AV LI ++PF+P  
Sbjct: 482 ACANAGLLDQGQAYFTSMIQDHGIEPCIEHYTCMVWLLGRGGHLDKAVKLIDEIPFQPSV 541

Query: 342 AIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLS 401
            ++  LL AC +H  ++L   +A  +  + P + A  +V L+N+YA  K+WD+VA +R +
Sbjct: 542 MVWRALLGACVIHNDIELGRISAQRVLEMEPQDKA-THVLLSNMYATAKRWDNVASVRKN 600

Query: 402 MKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFA 461
           MK   V K PG SWIE    VH F  GD  HPE+  I+  L+ L  + K AGY+P+    
Sbjct: 601 MKRKGVKKEPGLSWIESQGTVHSFTVGDTSHPEVRVINGMLEWLHMKTKKAGYIPNYNVV 660

Query: 462 LHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKR 521
           L  V +E KE+LL  HSE+LA++FG+I+ P G+PIR+ KNLR+C DCH A K IS + +R
Sbjct: 661 LLDVEDEEKERLLWVHSERLALSFGIIRTPSGSPIRIMKNLRICVDCHAAIKCISKVVQR 720

Query: 522 EIIVRDTTRFHHFKDGTCSCGDYW 545
           EI+VRD  RFHHF++G CSCGDYW
Sbjct: 721 EIVVRDINRFHHFQEGLCSCGDYW 744



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 95/394 (24%), Positives = 166/394 (42%), Gaps = 73/394 (18%)

Query: 15  GFAKQRGKLKDAQELFDKIPQPDVVSY---NIMLSCILLNSDDVVAAF--DFFQRLPIKD 69
           GF+ Q  KL   QE    +   +  S+   N +  CI  +          +  +R    D
Sbjct: 15  GFSVQSAKL--TQEFVGHVSPSEFNSHAYANALQDCIQKDEPSRGKGLHCEILKRGGCLD 72

Query: 70  TASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE---------------- 113
             +WN +++ +V+   +  A  LF  MPE+N++S+  +I GY E                
Sbjct: 73  LFAWNILLNMYVKSDFLCDASKLFDEMPERNTISFVTLIQGYAESVRFLEAIELFVRLHR 132

Query: 114 ---------------------CGQLDKAVE--LFKVAPVKSVVAWTAMISGYMKFGYV-- 148
                                CG+L   +   +FK+    +    TA+I  Y   G V  
Sbjct: 133 EGHELNPFVFTTILKLLVSTDCGELGWGIHACIFKLGHESNAFVGTALIDAYSVCGRVDV 192

Query: 149 ------------------------ENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSH 184
                                   EN   ++ LKL   M  +G +PN  + +SV   C  
Sbjct: 193 AREVFDGILYKDMVSWTGMVTCFAENDCFKEALKLFSQMRMVGFKPNNFTFASVFKACLG 252

Query: 185 LSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAM 244
           L +  +GK VH    KS    D      L+ +Y K GD++DA + F EI +KDV+ W+ M
Sbjct: 253 LEAFDVGKSVHGCALKSRYELDLYVGVALLDLYTKSGDIDDARRAFEEIPKKDVIPWSFM 312

Query: 245 ISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYG 304
           I+ YAQ  + ++A+ +F +M+   + P+  TF ++L AC     ++LG Q    ++   G
Sbjct: 313 IARYAQSDQSKEAVEMFFQMRQALVLPNQFTFASVLQACATMEGLNLGNQIHCHVIK-IG 371

Query: 305 IAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 338
           + +       ++D+  + G++  +++L  + P +
Sbjct: 372 LHSDVFVSNALMDVYAKCGRMENSMELFAESPHR 405



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 52/214 (24%), Positives = 87/214 (40%), Gaps = 33/214 (15%)

Query: 171 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 230
           N+ + ++ L  C        GK +H  + K   C D  A   L++MY K   L DA KLF
Sbjct: 37  NSHAYANALQDCIQKDEPSRGKGLHCEILKRGGCLDLFAWNILLNMYVKSDFLCDASKLF 96

Query: 231 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEG--MKPDSITFVALLLACNHAGL 288
            E+  ++ +++  +I GYA+  +  +A+ LF ++  EG  + P   T +  LL     G 
Sbjct: 97  DEMPERNTISFVTLIQGYAESVRFLEAIELFVRLHREGHELNPFVFTTILKLLVSTDCGE 156

Query: 289 VDLGIQ-------------YFDSMVNDYGIAAKPD---------------HYTCMVDLLG 320
           +  GI                 ++++ Y +  + D                +T MV    
Sbjct: 157 LGWGIHACIFKLGHESNAFVGTALIDAYSVCGRVDVAREVFDGILYKDMVSWTGMVTCFA 216

Query: 321 RAGKLVEAVDLIKKM---PFKPQPAIFGTLLSAC 351
                 EA+ L  +M    FKP    F ++  AC
Sbjct: 217 ENDCFKEALKLFSQMRMVGFKPNNFTFASVFKAC 250


>gi|77553706|gb|ABA96502.1| SEC14 cytosolic factor, putative [Oryza sativa Japonica Group]
 gi|125535837|gb|EAY82325.1| hypothetical protein OsI_37535 [Oryza sativa Indica Group]
 gi|125578563|gb|EAZ19709.1| hypothetical protein OsJ_35285 [Oryza sativa Japonica Group]
          Length = 630

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 198/552 (35%), Positives = 324/552 (58%), Gaps = 18/552 (3%)

Query: 3   VKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFF 62
           V  TV  N +L     + G+   A+ +FD +    ++S+N M++    N +DV  A   F
Sbjct: 88  VTDTVTCN-ILINLYTKCGQNDCARRVFDAMSVRSIISWNTMIAGYTHNREDV-EALKLF 145

Query: 63  QRLPIKDTA----SWNTMISGFVQKKNMAKARDLF-----LAMPEKNSVSWSAMISGYIE 113
            R+  + T     + ++ +     K  + + + L      LA+   + V  +A +  Y +
Sbjct: 146 SRMHREGTQMTEFTLSSTLCACAAKYAIIECKQLHTIAIKLALDSSSFVG-TAFLDVYAK 204

Query: 114 CGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNAS 173
           C  +  A  +F+  P K+ V W+++ +G+     V+N   E+ L L +     G++    
Sbjct: 205 CNMIKDACWVFENMPEKTSVTWSSLFAGF-----VQNGLHEEVLCLFQSTQREGMQLTEF 259

Query: 174 SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI 233
           ++SS+L  C+ L+ +  G QVH ++ K    ++    T L+ +Y KCG +E + ++F ++
Sbjct: 260 TVSSILSTCASLALIIEGTQVHAVIVKHGFHRNLFVATSLVDVYAKCGQIEKSYEVFADM 319

Query: 234 QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGI 293
           + K+VV WNAMI+ +++H    +A+ LF+KM+  G+ P+ +T++++L AC+H GLV+ G 
Sbjct: 320 EEKNVVLWNAMIASFSRHAHSWEAMILFEKMQQVGIFPNEVTYLSILSACSHTGLVEEGR 379

Query: 294 QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRV 353
            YF+ +++D        HY+CMVD+LGR+GK  EA  L+ KMPF+P  +++G+LL + R+
Sbjct: 380 HYFNLLLSDRTAEPNVLHYSCMVDVLGRSGKTDEAWKLLDKMPFEPTASMWGSLLGSSRI 439

Query: 354 HKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGY 413
           HK + LA  AA  LF L P N  G +V L+N+YAA   W++V   R  ++++   K  G 
Sbjct: 440 HKNIRLARIAAEQLFRLEPEN-GGNHVLLSNVYAASGNWENVVVARKYLRDSGAKKEMGR 498

Query: 414 SWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQL 473
           SWIE    +H F +G+R HP +  ++ KL+E+   M+   +  + +  LH V  + KE+L
Sbjct: 499 SWIEAKGKIHVFVAGEREHPGITDVYNKLEEIYHEMRKISHRANTQCDLHDVHADQKEEL 558

Query: 474 LLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHH 533
           L  HSEKLA AFGLI +P   PI ++KNLR+CGDCH   K +S I +R++IVRD  RFHH
Sbjct: 559 LKHHSEKLAFAFGLISLPPNIPITIYKNLRICGDCHSFMKIVSCITERQVIVRDINRFHH 618

Query: 534 FKDGTCSCGDYW 545
           FKDG+CSCGD+W
Sbjct: 619 FKDGSCSCGDFW 630



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 37/110 (33%), Positives = 59/110 (53%)

Query: 174 SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI 233
           +L  +L  C+   SL +GK  H L     L  DT     LI++Y KCG  + A ++F  +
Sbjct: 58  TLHELLQLCAKRRSLLVGKSCHGLAIHFGLVTDTVTCNILINLYTKCGQNDCARRVFDAM 117

Query: 234 QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC 283
             + +++WN MI+GY  + +  +AL+LF +M  EG +    T  + L AC
Sbjct: 118 SVRSIISWNTMIAGYTHNREDVEALKLFSRMHREGTQMTEFTLSSTLCAC 167


>gi|326509211|dbj|BAJ91522.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 878

 Score =  377 bits (967), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 206/566 (36%), Positives = 308/566 (54%), Gaps = 62/566 (10%)

Query: 22  KLKDAQELFDKIPQPD--VVSYNIMLSCILLNSDDVVAAFDFFQRL-------PIKDTAS 72
           K+  A+ +FD +P+P   +  +N M+ C    +     A + F R+       P + T S
Sbjct: 333 KVASARRVFDMVPEPSRQLGMWNAMI-CGYAQAGMDEEALELFSRMEAEAGCAPSETTMS 391

Query: 73  W-------------NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDK 119
                            + G+V K+ MA            N    +A++  Y   G++D 
Sbjct: 392 GVLPACARSEGFAGKEAMHGYVVKRGMAG-----------NRFVQNALMDMYARLGEMDV 440

Query: 120 AVELFKVAPVKSVVAWTAMISGYMKFGYVENSW------------------AEDGLKLLR 161
           A  +F +   + VV+W  +I+G +  G+   ++                   E+G +  R
Sbjct: 441 ARRIFAMIDPRDVVSWNTLITGCVVQGHAAEAFQLVTEMQLPSPSPSSSSTTEEG-EAHR 499

Query: 162 MMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCG 221
            M      PN  +L ++L GC+ L++   GK++H    +  L  D    + L+ MY KCG
Sbjct: 500 CM------PNNITLMTLLPGCAALAAPARGKEIHGYAVRHALESDIAVGSALVDMYAKCG 553

Query: 222 DLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEG-MKPDSITFVALL 280
            L  +  +F  + R++V+TWN +I  Y  HG G++A+ LFD+M   G   P+ +TF+A L
Sbjct: 554 CLAASRAVFDRLPRRNVITWNVLIMAYGMHGLGDEAVALFDEMAAGGEATPNEVTFIAAL 613

Query: 281 LACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKP 339
            AC+H+GLVD G++ F  M  D+G+   PD + C+VD+LGRAG+L EA  +I  M P + 
Sbjct: 614 AACSHSGLVDRGLELFHGMERDHGVKPTPDLHACVVDVLGRAGRLDEAYSIITSMEPGEQ 673

Query: 340 QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIR 399
           Q + + +LL ACR+H+ ++L E AA  LF L P  A+  YV L NIY+A   WD    +R
Sbjct: 674 QVSAWSSLLGACRLHRNVELGEVAAERLFELEPGEASH-YVLLCNIYSAAGMWDKSVAVR 732

Query: 400 LSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLE 459
           + M+   V K PG SWIE+   +H F +G+  HP    +H  +  L +RM+  GY PD  
Sbjct: 733 VRMRRQGVAKEPGCSWIELDGAIHRFMAGESSHPASAEVHAHMDALWERMRREGYAPDTS 792

Query: 460 FALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIE 519
             LH V E+ K  +L +HSEKLAIAFGL++ P G  IRV KNLRVC DCH A K++S + 
Sbjct: 793 CVLHDVDEDEKAAMLRYHSEKLAIAFGLLRAPPGAAIRVAKNLRVCNDCHEAAKFMSKMV 852

Query: 520 KREIIVRDTTRFHHFKDGTCSCGDYW 545
            R+I++RD  RFHHF+DG+CSCGDYW
Sbjct: 853 GRDIVLRDVRRFHHFRDGSCSCGDYW 878



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 77/248 (31%), Positives = 119/248 (47%), Gaps = 22/248 (8%)

Query: 105 SAMISGYIECGQLDKAVELFKVA--PVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRM 162
           +A+++ Y  CG LD A+ LF      ++  V++ ++IS    F      W E  L  LR 
Sbjct: 104 NALLTAYARCGDLDAALALFAATATELRDAVSYNSLISALCLF----RQW-ERALDALRD 158

Query: 163 MIGLGIRPNASS--LSSVLLGCSHL---SSLQLGKQVHQLVFKSPLCKDTTALTP---LI 214
           M+  G R + SS  L SVLL CSHL      +LG++ H    K     +     P   L+
Sbjct: 159 MLAEG-RHDVSSFTLVSVLLACSHLPGDDGRRLGREAHAFALKRGFLDEGRERFPFNALL 217

Query: 215 SMYCKCGDLEDACKLFLEIQRK------DVVTWNAMISGYAQHGKGEKALRLFDKMKDEG 268
           SMY + G ++DA  LF            DVVTWN MIS   Q G+  +A+ +   M   G
Sbjct: 218 SMYARLGLVDDAQSLFRTTAAAFSPGGGDVVTWNTMISLLVQGGRCAEAVEVLYDMVSLG 277

Query: 269 MKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEA 328
           ++PD +TF + L AC+   ++ LG +    ++ D  +AA     + +VD+     K+  A
Sbjct: 278 VRPDGVTFASALPACSRLEMLALGREMHAVVLKDADLAANSFVASALVDMYAGNEKVASA 337

Query: 329 VDLIKKMP 336
             +   +P
Sbjct: 338 RRVFDMVP 345


>gi|225427070|ref|XP_002275784.1| PREDICTED: pentatricopeptide repeat-containing protein At1g31920
           [Vitis vinifera]
 gi|297742017|emb|CBI33804.3| unnamed protein product [Vitis vinifera]
          Length = 605

 Score =  377 bits (967), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 208/534 (38%), Positives = 313/534 (58%), Gaps = 16/534 (2%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCIL--LNSDDVVAAFDFFQRLPIK-DTASWNTMI 77
           G +  A  +F ++ +     +N M+   +  +N+++ +  +       +K D  ++ T++
Sbjct: 79  GSMDYACSIFRQMDELGSFQFNTMMRGHVKDMNTEEALITYKEMAERGVKPDNFTYPTLL 138

Query: 78  SGF-----VQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSV 132
                   V++     A  L L + E +    +++IS Y +CG++     +F+    +SV
Sbjct: 139 KACARLPAVEEGMQVHAHILKLGL-ENDVFVQNSLISMYGKCGEIGVCCAVFEQMNERSV 197

Query: 133 VAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGI-RPNASSLSSVLLGCSHLSSLQLG 191
            +W+A+I+ +   G     W+ D L+LL  M   G  R   S L SVL  C+HL +L LG
Sbjct: 198 ASWSALITAHASLGM----WS-DCLRLLGDMSNEGYWRAEESILVSVLSACTHLGALDLG 252

Query: 192 KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQH 251
           + VH  + ++    +    T LI MY KCG L     LF ++ +K+ ++++ MISG A H
Sbjct: 253 RSVHGFLLRNVSGLNVIVETSLIEMYLKCGSLYKGMCLFQKMAKKNKLSYSVMISGLAMH 312

Query: 252 GKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDH 311
           G G + LR+F +M ++G++PD I +V +L AC+HAGLV  G+Q F+ M  ++GI     H
Sbjct: 313 GYGREGLRIFTEMLEQGLEPDDIVYVGVLNACSHAGLVQEGLQCFNRMKLEHGIEPTIQH 372

Query: 312 YTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLN 371
           Y CMVDL+GRAGK+ EA++LIK MP +P   ++ +LLSA +VH  L   E AA  LF L+
Sbjct: 373 YGCMVDLMGRAGKIDEALELIKSMPMEPNDVLWRSLLSASKVHNNLQAGEIAAKQLFKLD 432

Query: 372 PANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRV 431
              A+  YV L+N+YA  ++W+DVA+ R +M    + + PG+S +EV   +H F S D  
Sbjct: 433 SQKASD-YVVLSNMYAQAQRWEDVAKTRTNMFSKGLSQRPGFSLVEVKRKMHRFVSQDAG 491

Query: 432 HPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVP 491
           HP+  S++E L ++E ++K  GY PD    L  V EE K+Q L  HS+KLAIA+ LI   
Sbjct: 492 HPQSESVYEMLYQMEWQLKFEGYSPDTTQVLCDVDEEEKKQRLSGHSQKLAIAYALIHTS 551

Query: 492 LGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
            G+PIR+ +NLR+C DCH  TK IS I  REI VRD  RFHHFKDG CSC DYW
Sbjct: 552 QGSPIRIVRNLRMCNDCHTYTKLISIIFDREITVRDRHRFHHFKDGACSCRDYW 605


>gi|413918610|gb|AFW58542.1| hypothetical protein ZEAMMB73_242801 [Zea mays]
          Length = 941

 Score =  377 bits (967), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 197/523 (37%), Positives = 290/523 (55%), Gaps = 45/523 (8%)

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISG----------- 110
           F+ + I+D  SW T+++ F Q    ++A ++ L + ++  +  S MI             
Sbjct: 425 FESMGIRDHISWTTILACFAQSSRHSEALEMILELQKEGIMVDSMMIGSILETCCGLKSI 484

Query: 111 ---------------------------YIECGQLDKAVELFKVAPVKSVVAWTAMISGYM 143
                                      Y ECG+ D ++ LF+    K +V+WT+MI+   
Sbjct: 485 SLLKQVHCYAIRNGLLDLILENRLIDIYGECGEFDHSLNLFQRVEKKDIVSWTSMINCCT 544

Query: 144 KFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPL 203
             G +  +     + L   M    I+P++ +L S+L+  + LSSL  GKQVH  + +   
Sbjct: 545 NNGRLNGA-----VFLFTEMQKANIQPDSVALVSILVAIAGLSSLTKGKQVHGFLIRRNF 599

Query: 204 CKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDK 263
             +   ++ L+ MY  CG +  A ++F   + KDVV W AMI+    HG G++A+ LF +
Sbjct: 600 PIEGPVVSSLVDMYSGCGSMNYAIRVFERAKCKDVVLWTAMINATGMHGHGKQAIDLFKR 659

Query: 264 MKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAG 323
           M   G+ PD ++F+ALL AC+H+ LV+ G  Y D MV+ Y +    +HY C+VD+LGR+G
Sbjct: 660 MLQTGLTPDHVSFLALLYACSHSKLVEEGKHYLDIMVSKYRLKPWQEHYACVVDILGRSG 719

Query: 324 KLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLA 383
           +  EA + IK MP  P+ A++  LL ACRVH+   LA  AA  L  L P N  G Y+ ++
Sbjct: 720 QTEEAYEFIKTMPMDPKSAVWCALLGACRVHRNYGLAVVAANKLLELEPDN-PGNYILVS 778

Query: 384 NIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLK 443
           N++A M KW++    R  M E  + K P  SWIE+G  +H F SGD  H +  +IH KL 
Sbjct: 779 NVFAEMGKWNNAKETRTRMAERGLRKNPACSWIEIGNNIHTFTSGDYCHRDSEAIHLKLS 838

Query: 444 ELEKRMKL-AGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNL 502
           E+ + ++   GYV D  F LH   EE K  +L  HSE++AIAFGLI    G PIR+ KNL
Sbjct: 839 EITEMLRREGGYVEDTRFVLHDTSEEEKIDMLHKHSERIAIAFGLISTRPGMPIRIAKNL 898

Query: 503 RVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           RVCGDCH  TK +S + +R+I+VRD  RFHHF  G+CSC D+W
Sbjct: 899 RVCGDCHEFTKLVSKLFERDIVVRDANRFHHFSGGSCSCEDFW 941



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 84/282 (29%), Positives = 129/282 (45%), Gaps = 36/282 (12%)

Query: 111 YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRP 170
           Y  CG++D A  LF   P ++V +W A++  Y+  G    +    G   +R     G  P
Sbjct: 105 YGRCGRVDDARRLFNGMPARTVFSWNALVGAYLSSGSAGEAMRVYGA--MRASAAPGSAP 162

Query: 171 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 230
           +  +L+SVL  C      + G +VH L  K  L K T     LI MY KCG L+ A ++F
Sbjct: 163 DGCTLASVLKACGAEGDGRCGGEVHGLAVKVGLDKSTLVANALIGMYAKCGLLDSALRVF 222

Query: 231 LEIQR--KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGL 288
             +Q+  +DV +WN+++SG  Q+G+  +AL LF  M+  G   +S T VA+L  C   GL
Sbjct: 223 EWLQQDARDVASWNSVVSGCVQNGRTLEALALFRGMQSAGFPMNSYTSVAVLQVCAELGL 282

Query: 289 VDLG----------------------IQY-----FDSMVNDYGIAAKPDH--YTCMVDLL 319
           + LG                      + Y      DS +  +G  A+ D+  +  M+   
Sbjct: 283 LSLGRELHAALLKCGSELNIQCNALLVMYAKYGRVDSALRVFGQIAEKDYISWNSMLSCY 342

Query: 320 GRAGKLVEAVDLIKKM---PFKPQPAIFGTLLSACRVHKRLD 358
            +     EA+D   +M    F+P  A   +L SA     RL+
Sbjct: 343 VQNSFYAEAIDFFGEMLQHGFQPDHACVVSLSSALGHLSRLN 384



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 83/370 (22%), Positives = 165/370 (44%), Gaps = 51/370 (13%)

Query: 47  CILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKN------ 100
           C LL  D  +  F++ Q+   +D ASWN+++SG VQ     +A  LF  M          
Sbjct: 212 CGLL--DSALRVFEWLQQ-DARDVASWNSVVSGCVQNGRTLEALALFRGMQSAGFPMNSY 268

Query: 101 --------------------------------SVSWSAMISGYIECGQLDKAVELFKVAP 128
                                           ++  +A++  Y + G++D A+ +F    
Sbjct: 269 TSVAVLQVCAELGLLSLGRELHAALLKCGSELNIQCNALLVMYAKYGRVDSALRVFGQIA 328

Query: 129 VKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSL 188
            K  ++W +M+S Y     V+NS+  + +     M+  G +P+ + + S+     HLS L
Sbjct: 329 EKDYISWNSMLSCY-----VQNSFYAEAIDFFGEMLQHGFQPDHACVVSLSSALGHLSRL 383

Query: 189 QLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGY 248
             G++ H    K  L  D      L+ MY KCG +E + K+F  +  +D ++W  +++ +
Sbjct: 384 NNGREFHAYAIKQRLHTDLQVGNTLMDMYIKCGSIECSAKVFESMGIRDHISWTTILACF 443

Query: 249 AQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK 308
           AQ  +  +AL +  +++ EG+  DS+   ++L  C     + L  Q     + +  +   
Sbjct: 444 AQSSRHSEALEMILELQKEGIMVDSMMIGSILETCCGLKSISLLKQVHCYAIRNGLLDLI 503

Query: 309 PDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAE--FAAMN 366
            ++   ++D+ G  G+   +++L +++  K     + ++++ C  + RL+ A   F  M 
Sbjct: 504 LENR--LIDIYGECGEFDHSLNLFQRVE-KKDIVSWTSMINCCTNNGRLNGAVFLFTEMQ 560

Query: 367 LFNLNPANAA 376
             N+ P + A
Sbjct: 561 KANIQPDSVA 570



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 43/180 (23%), Positives = 86/180 (47%), Gaps = 12/180 (6%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNS--DDVVAAFDFFQRLPIK-DTASWNTMI 77
           G+   +  LF ++ + D+VS+  M++C   N   +  V  F   Q+  I+ D+ +  +++
Sbjct: 516 GEFDHSLNLFQRVEKKDIVSWTSMINCCTNNGRLNGAVFLFTEMQKANIQPDSVALVSIL 575

Query: 78  SGFVQKKNMAKARDLFLAMPEKN----SVSWSAMISGYIECGQLDKAVELFKVAPVKSVV 133
                  ++ K + +   +  +N        S+++  Y  CG ++ A+ +F+ A  K VV
Sbjct: 576 VAIAGLSSLTKGKQVHGFLIRRNFPIEGPVVSSLVDMYSGCGSMNYAIRVFERAKCKDVV 635

Query: 134 AWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ 193
            WTAMI+     G+      +  + L + M+  G+ P+  S  ++L  CSH   ++ GK 
Sbjct: 636 LWTAMINATGMHGH-----GKQAIDLFKRMLQTGLTPDHVSFLALLYACSHSKLVEEGKH 690



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 53/103 (51%), Gaps = 6/103 (5%)

Query: 191 GKQVH-QLVFKSPLCKDTTAL--TPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISG 247
           G+QVH   V    L +D      T L+ MY +CG ++DA +LF  +  + V +WNA++  
Sbjct: 76  GRQVHAHAVTTGSLNEDDDGFLATKLVFMYGRCGRVDDARRLFNGMPARTVFSWNALVGA 135

Query: 248 YAQHGKGEKALRLFDKMKDE---GMKPDSITFVALLLACNHAG 287
           Y   G   +A+R++  M+     G  PD  T  ++L AC   G
Sbjct: 136 YLSSGSAGEAMRVYGAMRASAAPGSAPDGCTLASVLKACGAEG 178


>gi|302824741|ref|XP_002994011.1| hypothetical protein SELMODRAFT_137997 [Selaginella moellendorffii]
 gi|300138173|gb|EFJ04951.1| hypothetical protein SELMODRAFT_137997 [Selaginella moellendorffii]
          Length = 434

 Score =  377 bits (967), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 193/440 (43%), Positives = 275/440 (62%), Gaps = 7/440 (1%)

Query: 107 MISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGL 166
           MI+ Y   G++  A   F  AP ++  +W AMI+GY + G+ + +     L L R M   
Sbjct: 1   MIAAYARHGRMIHAKTTFDAAPRRNSSSWNAMIAGYAQNGHCKAA-----LHLFRAMNNE 55

Query: 167 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 226
           G R +  +  + +  C+ LS+L  G+ +H +   + L       T +++MY KCG+L+DA
Sbjct: 56  GQRCDMVTFVAAIDACAGLSALVAGRSLHSIAAAAGLVAHVEISTAIVNMYAKCGNLDDA 115

Query: 227 CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHA 286
             +F  I+ K++++W+ MI+ + Q+G  ++AL  F  M  +G+ PD++TF ++L AC+HA
Sbjct: 116 TIVFSSIRNKNLISWSTMITAFVQNGHTDRALDAFLAMNVDGLFPDAVTFKSILSACSHA 175

Query: 287 GLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGT 346
           GL + G  +FD +V+D+GI    DH+ CMVDLLGR+G+L+EA +L++ MPF P    + T
Sbjct: 176 GLFEHGFFHFDLLVHDFGITPTMDHFKCMVDLLGRSGRLLEAEELVQTMPFVPDDVTWNT 235

Query: 347 LLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENN 406
           LL+ACRVHK ++  + AA  L  L  +   G YV L+NI+AA     + A++R  M+   
Sbjct: 236 LLAACRVHKSVERGKRAAEVLLELT-SEIPGYYVLLSNIHAAAGDHAEKAKVRDLMEARG 294

Query: 407 VVKMPGYSWIEVGTVVHEFRSGDRV-HPELVSIHEKLKELEKRMKLAGYVPDLEFALHAV 465
           V K PG+S IE+    HEF +G++  HP+   I E+LK L   MK  GYVPD    L  V
Sbjct: 295 VRKKPGWSTIEINDRFHEFTAGEKFQHPKKQQILEELKRLSVLMKEDGYVPDTTEVLRLV 354

Query: 466 GEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIV 525
            E+ KE LL FHSEKLAIA GLI  P GT +RV KNLRVC DCH ATK+IS I  R+IIV
Sbjct: 355 NEDEKESLLFFHSEKLAIACGLISTPPGTTLRVVKNLRVCSDCHSATKFISKITGRKIIV 414

Query: 526 RDTTRFHHFKDGTCSCGDYW 545
           RD  RFHH ++G CSCGDYW
Sbjct: 415 RDLNRFHHTENGVCSCGDYW 434



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 60/264 (22%), Positives = 107/264 (40%), Gaps = 29/264 (10%)

Query: 12  VLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK--- 68
           ++A +A+  G++  A+  FD  P+ +  S+N M++    N     AA   F+ +  +   
Sbjct: 1   MIAAYARH-GRMIHAKTTFDAAPRRNSSSWNAMIAGYAQNG-HCKAALHLFRAMNNEGQR 58

Query: 69  -DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSW----SAMISGYIECGQLDKAVEL 123
            D  ++   I        +   R L         V+     +A+++ Y +CG LD A  +
Sbjct: 59  CDMVTFVAAIDACAGLSALVAGRSLHSIAAAAGLVAHVEISTAIVNMYAKCGNLDDATIV 118

Query: 124 FKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCS 183
           F     K++++W+ MI+      +V+N   +  L     M   G+ P+A +  S+L  CS
Sbjct: 119 FSSIRNKNLISWSTMIT-----AFVQNGHTDRALDAFLAMNVDGLFPDAVTFKSILSACS 173

Query: 184 HLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR-------- 235
           H    + G       F   L      +TP +  +    DL       LE +         
Sbjct: 174 HAGLFEHG------FFHFDLLVHDFGITPTMDHFKCMVDLLGRSGRLLEAEELVQTMPFV 227

Query: 236 KDVVTWNAMISGYAQHGKGEKALR 259
            D VTWN +++    H   E+  R
Sbjct: 228 PDDVTWNTLLAACRVHKSVERGKR 251


>gi|356526561|ref|XP_003531885.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 658

 Score =  377 bits (967), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 190/450 (42%), Positives = 281/450 (62%), Gaps = 8/450 (1%)

Query: 98  EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGL 157
           E N    + ++  Y + G +  A  +F   P K+ V+W+AMI+ + K     N      L
Sbjct: 215 EANIHVMTTLLDVYAKFGSVSYANSVFCAMPTKNFVSWSAMIACFAK-----NEMPMKAL 269

Query: 158 KLLRMMI--GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLIS 215
           +L ++M+       PN+ ++ ++L  C+ L++L+ GK +H  + +  L      L  LI+
Sbjct: 270 ELFQLMMFEACNSVPNSVTMVNMLQACAGLAALEQGKLIHGYILRRQLDSILPVLNALIT 329

Query: 216 MYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSIT 275
           MY +CG++    ++F  ++++DVV+WN++IS Y  HG G+KA+++F+ M  +G+ P  I+
Sbjct: 330 MYGRCGEVLMGQRVFDNMKKRDVVSWNSLISIYGMHGFGKKAIQIFENMIHQGVSPSYIS 389

Query: 276 FVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335
           F+ +L AC+HAGLV+ G   F+SM++ Y I    +HY CMVDLLGRA +L EA+ LI+ M
Sbjct: 390 FITVLGACSHAGLVEEGKILFESMLSKYRIHPGMEHYACMVDLLGRANRLGEAIKLIEDM 449

Query: 336 PFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDV 395
            F+P P ++G+LL +CR+H  ++LAE A+  LF L P N AG YV LA+IYA  K W + 
Sbjct: 450 HFEPGPTVWGSLLGSCRIHCNVELAERASTVLFELEPRN-AGNYVLLADIYAEAKLWSEA 508

Query: 396 ARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYV 455
             +   ++   + K+PG SWIEV   V+ F S D  +P++  IH  L +L   MK  GYV
Sbjct: 509 KSVMKLLEARGLQKLPGCSWIEVKRKVYSFVSVDEHNPQIEEIHALLVKLSNEMKAQGYV 568

Query: 456 PDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYI 515
           P     L+ + EE KE+++L HSEKLA+AFGLI    G  IR+ KNLR+C DCH  TK+I
Sbjct: 569 PQTNVVLYDLDEEEKERIVLGHSEKLAVAFGLINTAKGETIRIRKNLRLCEDCHAVTKFI 628

Query: 516 SAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           S    REI+VRD  RFHHF+DG CSCGDYW
Sbjct: 629 SKFANREILVRDVNRFHHFRDGVCSCGDYW 658



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 67/265 (25%), Positives = 122/265 (46%), Gaps = 17/265 (6%)

Query: 37  DVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM 96
           D+ S N  L   L    ++  A       P     ++  +I    QK +++   D+   +
Sbjct: 45  DINSNNNQLIQSLCKGGNLKQALHLLCCEPNPTQQTFEHLIYSCAQKNSLSYGLDVHRCL 104

Query: 97  PE----KNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSW 152
            +    ++    + +I+ Y E G +D+A+++F     +++  W A+       G+     
Sbjct: 105 VDSGFDQDPFLATKLINMYYELGSIDRALKVFDETRERTIYVWNALFRALAMVGH----- 159

Query: 153 AEDGLKLLRMMIGLGIRPNASSLSSVLLGC--SHLS--SLQLGKQVHQLVFKSPLCKDTT 208
            ++ L L   M  +G   +  + + VL  C  S LS   L+ GK++H  + +     +  
Sbjct: 160 GKELLDLYIQMNWIGTPSDRFTYTYVLKACVVSELSVCPLRKGKEIHAHILRHGYEANIH 219

Query: 209 ALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEG 268
            +T L+ +Y K G +  A  +F  +  K+ V+W+AMI+ +A++    KAL LF  M  E 
Sbjct: 220 VMTTLLDVYAKFGSVSYANSVFCAMPTKNFVSWSAMIACFAKNEMPMKALELFQLMMFEA 279

Query: 269 MK--PDSITFVALLLACNHAGLVDL 291
               P+S+T V +L AC  AGL  L
Sbjct: 280 CNSVPNSVTMVNMLQAC--AGLAAL 302



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 51/222 (22%), Positives = 94/222 (42%), Gaps = 5/222 (2%)

Query: 170 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 229
           P   +   ++  C+  +SL  G  VH+ +  S   +D    T LI+MY + G ++ A K+
Sbjct: 76  PTQQTFEHLIYSCAQKNSLSYGLDVHRCLVDSGFDQDPFLATKLINMYYELGSIDRALKV 135

Query: 230 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLV 289
           F E + + +  WNA+    A  G G++ L L+ +M   G   D  T+  +L AC  + L 
Sbjct: 136 FDETRERTIYVWNALFRALAMVGHGKELLDLYIQMNWIGTPSDRFTYTYVLKACVVSELS 195

Query: 290 DLGIQ---YFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGT 346
              ++      + +  +G  A     T ++D+  + G +  A  +   MP K    +  +
Sbjct: 196 VCPLRKGKEIHAHILRHGYEANIHVMTTLLDVYAKFGSVSYANSVFCAMPTK--NFVSWS 253

Query: 347 LLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAA 388
            + AC     + +       L      N+    V + N+  A
Sbjct: 254 AMIACFAKNEMPMKALELFQLMMFEACNSVPNSVTMVNMLQA 295


>gi|357518907|ref|XP_003629742.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523764|gb|AET04218.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 616

 Score =  377 bits (967), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 188/482 (39%), Positives = 286/482 (59%), Gaps = 9/482 (1%)

Query: 67  IKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKV 126
           + D    NT+I  +V+   +  AR +F  MP ++ V+W+ +I  Y   G +D A ELF  
Sbjct: 141 VNDLYVGNTIIHMYVKFGVLDCARKVFDEMPHRDVVTWTELIVAYARSGDMDSACELFVG 200

Query: 127 APVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLS 186
            PVK +VAWT+M++GY      +N+  +  L+  R M   G+  +  +L   +  C+ L 
Sbjct: 201 LPVKDMVAWTSMVTGYS-----QNAMPKKALQFFRKMREAGVVTDEITLVGAISACAQLG 255

Query: 187 SLQLGKQVHQLVFKSPLCKDTTAL--TPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAM 244
                  + ++   S     +     + LI MY KCG++E+A  +F  ++  +V ++++M
Sbjct: 256 VSGYADWIREIAESSRFGSGSNVFVGSALIDMYSKCGNVEEAYNVFKGMKEMNVFSYSSM 315

Query: 245 ISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYG 304
           I G+A HG+   A++LF +M + G+KP+ +TFV L  AC+HAG+V+ G Q F +M   YG
Sbjct: 316 IVGFAVHGRARSAIKLFYEMLENGIKPNHVTFVGLFTACSHAGMVEQGQQLFGAMKECYG 375

Query: 305 IAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAA 364
           ++   DHY CM DLLGRAG L +A+ L++ MP +P   ++G LL A  +H   D+AE A+
Sbjct: 376 VSPTADHYACMADLLGRAGHLEKALQLVQTMPMEPNGGVWGALLGASHIHGNPDVAEIAS 435

Query: 365 MNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEV-GTVVH 423
            +LF L P N  G Y+ L+  YA   KWDDV+R+R  M+E  + K PG SW+E    ++H
Sbjct: 436 RSLFELEPDN-LGNYLLLSKTYALAAKWDDVSRVRKLMREKQLRKNPGCSWVEAKNGIIH 494

Query: 424 EFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAI 483
           EF +GD  HPE+  I + L +L +R+K  GY P L    + + +E K  LL+ HSEKLA+
Sbjct: 495 EFFAGDVKHPEINEIKKALDDLLQRLKCTGYQPKLNSVPYDIDDEGKRCLLVSHSEKLAL 554

Query: 484 AFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGD 543
           A+GL+    G+ I++ KNLR+C DCH      S +  R+IIVRD  RFHHF +G CSC +
Sbjct: 555 AYGLLSTDAGSTIKIMKNLRICEDCHIVMCGASKLTGRKIIVRDNMRFHHFLNGACSCNN 614

Query: 544 YW 545
           +W
Sbjct: 615 FW 616



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 70/297 (23%), Positives = 125/297 (42%), Gaps = 62/297 (20%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
           N+++  + K  G L  A+++FD++P  DVV++  ++      S D+ +A + F  LP+KD
Sbjct: 148 NTIIHMYVK-FGVLDCARKVFDEMPHRDVVTWTELI-VAYARSGDMDSACELFVGLPVKD 205

Query: 70  TASWNTMISGFVQKKNMAKARDLFLAMPEKNSVS----------------------W--- 104
             +W +M++G+ Q     KA   F  M E   V+                      W   
Sbjct: 206 MVAWTSMVTGYSQNAMPKKALQFFRKMREAGVVTDEITLVGAISACAQLGVSGYADWIRE 265

Query: 105 ----------------SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYV 148
                           SA+I  Y +CG +++A  +FK     +V ++++MI G+   G  
Sbjct: 266 IAESSRFGSGSNVFVGSALIDMYSKCGNVEEAYNVFKGMKEMNVFSYSSMIVGFAVHGR- 324

Query: 149 ENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTT 208
               A   +KL   M+  GI+PN  +   +   CSH   ++ G+Q+   +      K+  
Sbjct: 325 ----ARSAIKLFYEMLENGIKPNHVTFVGLFTACSHAGMVEQGQQLFGAM------KECY 374

Query: 209 ALTPLISMYC-------KCGDLEDACKLFLEI-QRKDVVTWNAMISGYAQHGKGEKA 257
            ++P    Y        + G LE A +L   +    +   W A++     HG  + A
Sbjct: 375 GVSPTADHYACMADLLGRAGHLEKALQLVQTMPMEPNGGVWGALLGASHIHGNPDVA 431



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 58/238 (24%), Positives = 103/238 (43%), Gaps = 50/238 (21%)

Query: 135 WTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQV 194
           ++A+I  Y + G   +S     ++L   M+   + P + + S++    S L +  LG Q+
Sbjct: 80  YSALIRAYARNGPFHHS-----IRLYTSMLNNNVSPVSFTFSALF---SLLKNPSLGSQL 131

Query: 195 HQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVT-------------- 240
           H   F      D      +I MY K G L+ A K+F E+  +DVVT              
Sbjct: 132 HLHAFLFGFVNDLYVGNTIIHMYVKFGVLDCARKVFDEMPHRDVVTWTELIVAYARSGDM 191

Query: 241 -----------------WNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC 283
                            W +M++GY+Q+   +KAL+ F KM++ G+  D IT V  + AC
Sbjct: 192 DSACELFVGLPVKDMVAWTSMVTGYSQNAMPKKALQFFRKMREAGVVTDEITLVGAISAC 251

Query: 284 NHAGLVDLGIQYFDSMVND------YGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335
                  LG+  +   + +      +G  +     + ++D+  + G + EA ++ K M
Sbjct: 252 -----AQLGVSGYADWIREIAESSRFGSGSNVFVGSALIDMYSKCGNVEEAYNVFKGM 304



 Score = 46.6 bits (109), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 25/101 (24%), Positives = 50/101 (49%), Gaps = 3/101 (2%)

Query: 183 SHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK---LFLEIQRKDVV 239
           SH ++L   KQ+H  ++++ L + +  +T L+        +        LF ++   +  
Sbjct: 19  SHCTTLNHAKQLHAHIYRNNLHQSSYVITNLLRFITTLPHIPVHTYPHLLFSQVHSPNPF 78

Query: 240 TWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 280
            ++A+I  YA++G    ++RL+  M +  + P S TF AL 
Sbjct: 79  LYSALIRAYARNGPFHHSIRLYTSMLNNNVSPVSFTFSALF 119


>gi|357143522|ref|XP_003572950.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Brachypodium distachyon]
          Length = 874

 Score =  376 bits (966), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 224/620 (36%), Positives = 330/620 (53%), Gaps = 82/620 (13%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDK---IPQPDVVSYNIML------------ 45
           M  +  V+WN+++AG      +L+  Q   D    + +    +Y+ ++            
Sbjct: 262 METRDMVSWNTLMAGLLLNEHQLEALQLFHDSRASMAKLSQSTYSTVIKLCANLKQLALA 321

Query: 46  ----SCIL---LNSDDVVA---------------AFDFFQRLP-IKDTASWNTMISGFVQ 82
               SC+L    +SD  V                AF+ F  +P  ++  SW  MI G +Q
Sbjct: 322 RQLHSCVLKHGFHSDGNVMTAIMDAYSKCGELDDAFNIFLLMPGSQNVVSWTAMIGGCIQ 381

Query: 83  KKNMAKARDLFLAMPEKN------------------------------------SVSWSA 106
             ++  A  LF  M E N                                    SV  +A
Sbjct: 382 NADIPLAAALFSRMREDNVKPNEFTYSTVLTASIPILLPQIHAQIIKTNYQHAPSVG-TA 440

Query: 107 MISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGL 166
           +++ Y + G  ++A+ +FK+   K VVAW+AM+S Y + G  + +       +   M   
Sbjct: 441 LLASYSKLGNTEEALSIFKMIDHKDVVAWSAMLSCYSQAGDCDGA-----TNVFIKMSMQ 495

Query: 167 GIRPNASSLSSVLLGC-SHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLED 225
           G++PN  ++SS +  C S  + +  G+Q H +  K          + L++MY + G ++ 
Sbjct: 496 GMKPNEFTISSAIDACASPTAGIDQGRQFHAISIKYRYQDAICVGSALVTMYARKGSIDS 555

Query: 226 ACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNH 285
           A  +F     +D+V+WN+MISGYAQHG  ++AL  F +M+  G++ D  TF+A+++ C H
Sbjct: 556 ARIVFERQTDRDLVSWNSMISGYAQHGYSKEALDTFRQMETVGIEMDGATFLAVIVGCTH 615

Query: 286 AGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFG 345
           AGLV  G QYFDSMV D+ I+   +HY+CMVDL  RAGKL E ++LI+ MPF     ++ 
Sbjct: 616 AGLVKEGQQYFDSMVMDHNISPTMEHYSCMVDLYSRAGKLDETMNLIEGMPFPAGAMVWR 675

Query: 346 TLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKEN 405
           TLL ACRVHK ++L + AA  L  L P ++A  YV L+NIYAA  +W +   +R  M   
Sbjct: 676 TLLGACRVHKNVELGKLAAQKLLLLEPDDSA-TYVLLSNIYAAAGRWKERDEVRKLMDSK 734

Query: 406 NVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAV 465
            V K  G SWI++   VH F + D+ HP    I+ KLK +  R+K  GY P+    LH +
Sbjct: 735 KVKKEAGCSWIQIKNKVHSFIACDKSHPLSEQIYAKLKAMTTRLKQEGYCPNTSVVLHDI 794

Query: 466 GEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIV 525
            EE KE +L+ HSE+LA+AFGLI  P  TP+++ KNLRVCGDCH   K +S IE REII+
Sbjct: 795 AEEQKETMLVMHSERLALAFGLIATPPRTPLQIVKNLRVCGDCHMVMKMVSLIEDREIIM 854

Query: 526 RDTTRFHHFKDGTCSCGDYW 545
           RD +RFHHF  G CSCGD+W
Sbjct: 855 RDCSRFHHFNAGACSCGDFW 874



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 87/295 (29%), Positives = 152/295 (51%), Gaps = 19/295 (6%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAA---FDFFQRLP 66
           NS++  ++K  G +++A+ +F ++   D+VS+N +++ +LLN   + A     D    + 
Sbjct: 240 NSLINMYSKC-GLVEEAKAVFRQMETRDMVSWNTLMAGLLLNEHQLEALQLFHDSRASMA 298

Query: 67  IKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVS----WSAMISGYIECGQLDKAVE 122
               ++++T+I      K +A AR L   + +    S     +A++  Y +CG+LD A  
Sbjct: 299 KLSQSTYSTVIKLCANLKQLALARQLHSCVLKHGFHSDGNVMTAIMDAYSKCGELDDAFN 358

Query: 123 LFKVAP-VKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLG 181
           +F + P  ++VV+WTAMI      G ++N+       L   M    ++PN  + S+VL  
Sbjct: 359 IFLLMPGSQNVVSWTAMIG-----GCIQNADIPLAAALFSRMREDNVKPNEFTYSTVLTA 413

Query: 182 CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTW 241
               S   L  Q+H  + K+      +  T L++ Y K G+ E+A  +F  I  KDVV W
Sbjct: 414 ----SIPILLPQIHAQIIKTNYQHAPSVGTALLASYSKLGNTEEALSIFKMIDHKDVVAW 469

Query: 242 NAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC-NHAGLVDLGIQY 295
           +AM+S Y+Q G  + A  +F KM  +GMKP+  T  + + AC +    +D G Q+
Sbjct: 470 SAMLSCYSQAGDCDGATNVFIKMSMQGMKPNEFTISSAIDACASPTAGIDQGRQF 524



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 70/271 (25%), Positives = 135/271 (49%), Gaps = 10/271 (3%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI 164
           +A++  Y++CG ++    +F+  P ++VV WT++++GY     V+     D + L   M 
Sbjct: 139 TALVDMYMKCGGVEDGRVVFEGMPKRNVVTWTSLLTGY-----VQGRACSDVMALFFRMR 193

Query: 165 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTT-ALTPLISMYCKCGDL 223
             G+ PN  + +SVL   +   ++ LG++VH    K   C+ T      LI+MY KCG +
Sbjct: 194 AEGVWPNPFTFTSVLSAVASQGAVDLGRRVHAQSVKFG-CRSTVFVCNSLINMYSKCGLV 252

Query: 224 EDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC 283
           E+A  +F +++ +D+V+WN +++G   +    +AL+LF   +    K    T+  ++  C
Sbjct: 253 EEAKAVFRQMETRDMVSWNTLMAGLLLNEHQLEALQLFHDSRASMAKLSQSTYSTVIKLC 312

Query: 284 NHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAI 343
            +   + L  Q   S V  +G  +  +  T ++D   + G+L +A ++   MP       
Sbjct: 313 ANLKQLALARQ-LHSCVLKHGFHSDGNVMTAIMDAYSKCGELDDAFNIFLLMPGSQNVVS 371

Query: 344 FGTLLSACRVHKRLDLAE--FAAMNLFNLNP 372
           +  ++  C  +  + LA   F+ M   N+ P
Sbjct: 372 WTAMIGGCIQNADIPLAAALFSRMREDNVKP 402



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/261 (23%), Positives = 123/261 (47%), Gaps = 45/261 (17%)

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISG------- 110
           F+ +P ++  +W ++++G+VQ +  +    LF  M  +    N  ++++++S        
Sbjct: 158 FEGMPKRNVVTWTSLLTGYVQGRACSDVMALFFRMRAEGVWPNPFTFTSVLSAVASQGAV 217

Query: 111 ----------------------------YIECGQLDKAVELFKVAPVKSVVAWTAMISGY 142
                                       Y +CG +++A  +F+    + +V+W  +++G 
Sbjct: 218 DLGRRVHAQSVKFGCRSTVFVCNSLINMYSKCGLVEEAKAVFRQMETRDMVSWNTLMAGL 277

Query: 143 MKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSP 202
           +      N    + L+L         + + S+ S+V+  C++L  L L +Q+H  V K  
Sbjct: 278 LL-----NEHQLEALQLFHDSRASMAKLSQSTYSTVIKLCANLKQLALARQLHSCVLKHG 332

Query: 203 LCKDTTALTPLISMYCKCGDLEDACKLFLEIQ-RKDVVTWNAMISGYAQHGKGEKALRLF 261
              D   +T ++  Y KCG+L+DA  +FL +   ++VV+W AMI G  Q+     A  LF
Sbjct: 333 FHSDGNVMTAIMDAYSKCGELDDAFNIFLLMPGSQNVVSWTAMIGGCIQNADIPLAAALF 392

Query: 262 DKMKDEGMKPDSITFVALLLA 282
            +M+++ +KP+  T+  +L A
Sbjct: 393 SRMREDNVKPNEFTYSTVLTA 413


>gi|326497609|dbj|BAK05894.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 676

 Score =  376 bits (966), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 212/545 (38%), Positives = 315/545 (57%), Gaps = 19/545 (3%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
           +SVL  +AK  G + DA ++FD++ + D V+++ M++   +N+   V A + + R+    
Sbjct: 142 SSVLNLYAKC-GAMDDAVKVFDRMRKRDRVTWSTMVTG-FVNAGQPVQAIEMYMRMRRDG 199

Query: 70  TASWNTMISGFVQK------KNMAKARDLFL---AMPEKNSVSWSAMISGYIECGQLDKA 120
             +   +I G +Q         M  +   +L   AM + + V  ++++  Y + G  D+A
Sbjct: 200 LEADEVVIVGVMQACAATGDARMGASVHGYLLRHAM-QMDVVISTSLVDMYAKNGLFDQA 258

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLL 180
             +F++ P ++ V+W+A+IS   ++G      A++ L L RMM   G+ PN+  +   LL
Sbjct: 259 RRVFELMPHRNDVSWSALISQLAQYGN-----ADEALGLFRMMQVSGLHPNSGPVVGALL 313

Query: 181 GCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVT 240
            CS L  L+LGK +H  + ++ L  D    T +I MY KCG L  A  LF ++  +D+++
Sbjct: 314 ACSDLGLLKLGKSIHGFILRT-LELDRMVGTAVIDMYSKCGSLSSAQMLFDKVVSRDLIS 372

Query: 241 WNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV 300
           WN MI+    HG+G  AL LF +MK   ++PD  TF +LL A +H+GLV+ G  +F+ MV
Sbjct: 373 WNVMIACCGAHGRGRDALSLFQEMKRNEVRPDHATFASLLSALSHSGLVEEGKFWFNCMV 432

Query: 301 NDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLA 360
           N+YGI     H  C+VDLL R+G + EA  L+  +  KP  +I   LLS C  + +L+L 
Sbjct: 433 NEYGIEPGEKHLVCIVDLLARSGLVEEANGLVASLHSKPTISILVALLSGCLNNNKLELG 492

Query: 361 EFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGT 420
           E  A  +  L P +  G    ++N+YAA K W  V  +R  MK++   K PG S IE+  
Sbjct: 493 ESTAEKILELQPGDV-GVLALVSNLYAAAKNWYKVREVRKLMKDHGSKKAPGCSSIEIRG 551

Query: 421 VVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEK 480
            +H F   D+ HP+   I + + +L+  M+  GY+P  EF  H + E VKEQLL  HSE+
Sbjct: 552 ALHTFVMEDQSHPQHRQILQMVMKLDSEMRKMGYIPKTEFVYHDLEEGVKEQLLSRHSER 611

Query: 481 LAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCS 540
           LA AFGL+    GT + V KNLRVCGDCH A KY+S I  REI+VRD  RFHHFKDG CS
Sbjct: 612 LATAFGLLNTSPGTRLVVIKNLRVCGDCHDAIKYMSKIADREIVVRDAKRFHHFKDGACS 671

Query: 541 CGDYW 545
           CGDYW
Sbjct: 672 CGDYW 676



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/272 (22%), Positives = 129/272 (47%), Gaps = 12/272 (4%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVK--SVVAWTAMISGYMKFGYVENSWAEDGLKLLRM 162
           S + + Y   G L  A      AP    S+ AW A+++ + +      +   + L++ R 
Sbjct: 40  SCLATAYARAGDLAAAESTLATAPTSPSSIPAWNALLAAHSR-----GASPHEALRVFRA 94

Query: 163 MIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGD 222
           +     RP++++ +  L  C+ L  L  G+ V      +    D    + ++++Y KCG 
Sbjct: 95  LPP-AARPDSTTFTLALSACARLGDLATGEVVTDRASGAGYGNDIFVCSSVLNLYAKCGA 153

Query: 223 LEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA 282
           ++DA K+F  ++++D VTW+ M++G+   G+  +A+ ++ +M+ +G++ D +  V ++ A
Sbjct: 154 MDDAVKVFDRMRKRDRVTWSTMVTGFVNAGQPVQAIEMYMRMRRDGLEADEVVIVGVMQA 213

Query: 283 CNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPA 342
           C   G   +G      ++  + +       T +VD+  + G   +A  + + MP +   +
Sbjct: 214 CAATGDARMGASVHGYLLR-HAMQMDVVISTSLVDMYAKNGLFDQARRVFELMPHRNDVS 272

Query: 343 IFGTLLSACRVHKRLD--LAEFAAMNLFNLNP 372
            +  L+S    +   D  L  F  M +  L+P
Sbjct: 273 -WSALISQLAQYGNADEALGLFRMMQVSGLHP 303


>gi|297794983|ref|XP_002865376.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311211|gb|EFH41635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 658

 Score =  376 bits (966), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 200/549 (36%), Positives = 314/549 (57%), Gaps = 20/549 (3%)

Query: 9   WNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCIL--------LNSDDVVAAFD 60
           W +V+ G+  + GK  +A  ++  + + ++   +   S +L        LN      A  
Sbjct: 118 WTAVIRGYTIE-GKFDEAIAMYGCMRKEEITPVSFTFSALLKACGSMGDLNLGRQFHAQT 176

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
           F  R         NTMI  +V+  ++  AR +F  MPE++ +SW+ +I+ Y   G ++ A
Sbjct: 177 FRLR-GFCFVYVGNTMIDMYVKCGSIVCARKVFDEMPERDVISWTELIAAYARVGNMESA 235

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLL 180
            +LF+  P K +VAWTAM++G+      +N+  ++ L+    M   GIR +  +++  + 
Sbjct: 236 ADLFESLPTKDMVAWTAMVTGF-----AQNAKPQEALEYFDRMEKSGIRADEVTVAGYIS 290

Query: 181 GCSHLSSLQLGKQVHQLVFKSPLCKDTTAL--TPLISMYCKCGDLEDACKLFLEIQRKDV 238
            C+ L + +   +  Q+  KS        +  + LI MY KCG++E+A  +F+ +  K+V
Sbjct: 291 ACAQLGASKYADRAVQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFVSMNNKNV 350

Query: 239 VTWNAMISGYAQHGKGEKALRLFDKMKDE-GMKPDSITFVALLLACNHAGLVDLGIQYFD 297
            ++++MI G A HG+ ++AL LF  M  +  +KP+++TFV  L AC+H+GLVD G Q F 
Sbjct: 351 FSYSSMILGLATHGRAQEALDLFHYMVTQTAIKPNTVTFVGALTACSHSGLVDQGRQVFA 410

Query: 298 SMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRL 357
           SM   +G+    DHYTCMVDLLGRAG+L EA++LIK M  +P   ++G LL ACR+H   
Sbjct: 411 SMYQTFGVEPTRDHYTCMVDLLGRAGRLQEALELIKTMSVEPHGGVWGALLGACRIHNNP 470

Query: 358 DLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSW-I 416
           D+AE AA +LF L P +  G Y+ L+N+Y++   W  V  +R  +KE  + K P  SW +
Sbjct: 471 DIAEIAAEHLFELEP-DIIGNYILLSNVYSSAGDWGGVLSVRKLIKEKGLKKTPAVSWVV 529

Query: 417 EVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLF 476
           +    +H+F  G+  HP    I +KL+EL +R+   GY PDL    + V +  K  +L+ 
Sbjct: 530 DKNGQMHKFFPGNLNHPMSKKIQDKLEELVERLTALGYQPDLSSVPYDVSDNAKRLILIQ 589

Query: 477 HSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKD 536
           H+EKLA+AF L+       I++ KNLR+C DCH   +  S +  R II+RD  RFHHF+ 
Sbjct: 590 HTEKLALAFSLLTTNRDYTIKIMKNLRMCQDCHMFMRLASEVTGRVIIMRDNMRFHHFRS 649

Query: 537 GTCSCGDYW 545
           G CSCGD+W
Sbjct: 650 GACSCGDFW 658



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 80/166 (48%), Gaps = 6/166 (3%)

Query: 173 SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC--KLF 230
           SSL S L  C +L+ +   KQ+H  V +  L +    LT LI    K G   D    ++ 
Sbjct: 51  SSLISKLDDCINLNQI---KQIHGHVLRKGLDQSCYILTKLIRTLTKLGVPMDPYPRRVI 107

Query: 231 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVD 290
             +Q ++   W A+I GY   GK ++A+ ++  M+ E + P S TF ALL AC   G ++
Sbjct: 108 EPVQFRNPFLWTAVIRGYTIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGSMGDLN 167

Query: 291 LGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 336
           LG Q+        G        T M+D+  + G +V A  +  +MP
Sbjct: 168 LGRQFHAQTFRLRGFCFVYVGNT-MIDMYVKCGSIVCARKVFDEMP 212


>gi|357135382|ref|XP_003569289.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Brachypodium distachyon]
          Length = 1054

 Score =  376 bits (966), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 212/538 (39%), Positives = 327/538 (60%), Gaps = 21/538 (3%)

Query: 21   GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP----IKDTASWNTM 76
            G   ++ E+F+ + + D+VS+N ++  ++ +      + + F  +       +  ++  +
Sbjct: 525  GARSESWEIFNSMAEHDIVSWNSIMGVMVSSHAPTAESVEVFSNMMRSGLTPNKVTFVNL 584

Query: 77   ISGF-----VQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFK-VAPVK 130
            +S       ++      A  L     E N+V  +A++S Y + G +D   +LF  ++  +
Sbjct: 585  LSALSPLSVLELGKQVHAVVLKHGAIEDNAVD-NALMSCYAKSGDMDSCEQLFSSMSGRR 643

Query: 131  SVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQL 190
              V+W +MISGY+  G+++ +     +  + +M+      +  + S VL  C+ +++L+ 
Sbjct: 644  DAVSWNSMISGYIYNGHLQET-----MDCVWLMMHSNQMLDCCTFSIVLNACASVAALER 698

Query: 191  GKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQ 250
            G ++H    +S L  D    + L+ MY KCG ++ A K+F  + +K+  +WN+MISGYA+
Sbjct: 699  GMEMHAFGIRSQLESDVVVESALLDMYSKCGRIDYASKVFNSMSQKNEFSWNSMISGYAR 758

Query: 251  HGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPD 310
            HG GEKAL +F++M+  G  PD +TFV++L AC+HAGLVD G+ YF+ M+ D+GI    +
Sbjct: 759  HGLGEKALEIFEEMQRNGACPDHVTFVSVLSACSHAGLVDRGLDYFE-MMEDHGILPHIE 817

Query: 311  HYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHK---RLDLAEFAAMNL 367
            HY+C++DLLGRAGKL++  + I +MP KP   I+ T+L ACR  K   R+DL + A+  L
Sbjct: 818  HYSCVIDLLGRAGKLLKIQEYINRMPMKPNTLIWRTVLVACRQSKDGDRIDLGKEASRML 877

Query: 368  FNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRS 427
              L P N    YV  +N YAA  +W+D A+ R +M    + K  G SW+ +G  VH F +
Sbjct: 878  LELEPQNPVN-YVLASNFYAATGRWEDTAKARAAMGGAAMKKEAGQSWVTLGDGVHTFIA 936

Query: 428  GDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGL 487
            GDR HP    I+EKL  L +++K AGYVP  EFAL+ + EE KE+LL +HSEKLA+AF L
Sbjct: 937  GDRSHPNTKEIYEKLNFLIQKIKNAGYVPMTEFALYDLEEENKEELLSYHSEKLAVAFVL 996

Query: 488  IKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
             +     PIR+ KNLRVCGDCH A +YIS I  R+II+RD+ RFHHF+DG CSCGDYW
Sbjct: 997  TRSSSDVPIRIMKNLRVCGDCHTAFRYISQIVCRQIILRDSIRFHHFEDGKCSCGDYW 1054



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 69/298 (23%), Positives = 148/298 (49%), Gaps = 20/298 (6%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLN--SDDVVAAFDFFQRLPI 67
           +++++ FA+  G L +A+++F  + + + V+ N ++  ++    S++ V  F   +   +
Sbjct: 309 SALVSAFARH-GMLDEAKDIFINLKERNAVTLNGLIVGLVKQHCSEEAVGIFMGTRDSFV 367

Query: 68  KDTASWNTMISGFVQ----KKNMAKARDLFLAMPEKNSVSW-----SAMISGYIECGQLD 118
            +T ++  ++S   +    +  + + R++   +     +       + +++ Y +CG +D
Sbjct: 368 VNTDTFVVLLSAVAEFSIPEDGLMRGREVHGHILRTGLIDLKIALSNGLVNMYAKCGAID 427

Query: 119 KAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLG-IRPNASSLSS 177
           KA  +F++   +  V+W  +IS   + G+ E      G  +   M+  G I P+  +  S
Sbjct: 428 KASRVFRLLCARDRVSWNTIISVLDQNGFCE------GAMMNYCMMRQGCISPSNFAAIS 481

Query: 178 VLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKD 237
            L  C+ L  L  G+QVH    K  L  DT+    L+ MY  CG   ++ ++F  +   D
Sbjct: 482 GLSSCASLRLLTAGQQVHCDAVKWGLDLDTSVSNALVKMYGDCGARSESWEIFNSMAEHD 541

Query: 238 VVTWNAMIS-GYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ 294
           +V+WN+++    + H    +++ +F  M   G+ P+ +TFV LL A +   +++LG Q
Sbjct: 542 IVSWNSIMGVMVSSHAPTAESVEVFSNMMRSGLTPNKVTFVNLLSALSPLSVLELGKQ 599



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 78/295 (26%), Positives = 128/295 (43%), Gaps = 53/295 (17%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVV 133
           N +++ + +   +A AR +F  M E+N+VSW+ ++SGY+  G  D+A  +FK        
Sbjct: 95  NHLVNLYAKGSRLAAARQVFDGMLERNAVSWTCLVSGYVLSGITDEAFRVFK-------- 146

Query: 134 AWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSS--LQLG 191
              AM+    +F                       RP   +  SVL  C       L   
Sbjct: 147 ---AMLWEGSEFS----------------------RPTPFTFGSVLRACQDAGPDLLAFA 181

Query: 192 KQVHQLVFKSPLCKDTTALTPLISMY--CKCGDLEDACKLFLEIQRKDVVTWNAMISGYA 249
            QVH LV K+    +TT    LISMY  C  G    A ++F     +D++TWNA++S YA
Sbjct: 182 VQVHGLVSKTIYASNTTVCNALISMYGNCSVGLPLQAQQVFDTTPVRDLITWNALMSVYA 241

Query: 250 QHGKGEKALRLFDKMKDEG----MKPDSITFVALLLACN----HAGLVDLGIQYFDSMVN 301
           + G       LF  M  +     ++P+  TF +L+ A +     +G++D   Q F  ++ 
Sbjct: 242 KKGYVVSTFTLFMAMLHDDSAIELRPNEHTFGSLITATSLSSCSSGVLD---QVFARVLK 298

Query: 302 DYGIAAKPDHY--TCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVH 354
                +  D Y  + +V    R G L EA D+   +  +    + G ++   + H
Sbjct: 299 S---GSSSDLYVGSALVSAFARHGMLDEAKDIFINLKERNAVTLNGLIVGLVKQH 350



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 76/332 (22%), Positives = 146/332 (43%), Gaps = 34/332 (10%)

Query: 26  AQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTA--------SWNTMI 77
           AQ++FD  P  D++++N ++S +      VV+ F  F  +   D+A        ++ ++I
Sbjct: 218 AQQVFDTTPVRDLITWNALMS-VYAKKGYVVSTFTLFMAMLHDDSAIELRPNEHTFGSLI 276

Query: 78  SGFVQKKNMAKARDLFLAMPEKNSVS-----WSAMISGYIECGQLDKAVELFKVAPVKSV 132
           +        +   D   A   K+  S      SA++S +   G LD+A ++F     ++ 
Sbjct: 277 TATSLSSCSSGVLDQVFARVLKSGSSSDLYVGSALVSAFARHGMLDEAKDIFINLKERNA 336

Query: 133 VAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRP----NASSLSSVLLGCSHLS-- 186
           V    +I      G V+   +E+ + +      +G R     N  +   +L   +  S  
Sbjct: 337 VTLNGLI-----VGLVKQHCSEEAVGIF-----MGTRDSFVVNTDTFVVLLSAVAEFSIP 386

Query: 187 --SLQLGKQVHQLVFKSPLCKDTTALTP-LISMYCKCGDLEDACKLFLEIQRKDVVTWNA 243
              L  G++VH  + ++ L     AL+  L++MY KCG ++ A ++F  +  +D V+WN 
Sbjct: 387 EDGLMRGREVHGHILRTGLIDLKIALSNGLVNMYAKCGAIDKASRVFRLLCARDRVSWNT 446

Query: 244 MISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDY 303
           +IS   Q+G  E A+  +  M+   + P +   ++ L +C    L+  G Q     V  +
Sbjct: 447 IISVLDQNGFCEGAMMNYCMMRQGCISPSNFAAISGLSSCASLRLLTAGQQVHCDAVK-W 505

Query: 304 GIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335
           G+         +V + G  G   E+ ++   M
Sbjct: 506 GLDLDTSVSNALVKMYGDCGARSESWEIFNSM 537



 Score = 52.0 bits (123), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 51/99 (51%), Gaps = 3/99 (3%)

Query: 192 KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQH 251
           +++H  + K  L  D      L+++Y K   L  A ++F  +  ++ V+W  ++SGY   
Sbjct: 76  ERLHLELVKRGLTHDLFLSNHLVNLYAKGSRLAAARQVFDGMLERNAVSWTCLVSGYVLS 135

Query: 252 GKGEKALRLFDKMKDEG---MKPDSITFVALLLACNHAG 287
           G  ++A R+F  M  EG    +P   TF ++L AC  AG
Sbjct: 136 GITDEAFRVFKAMLWEGSEFSRPTPFTFGSVLRACQDAG 174


>gi|449434296|ref|XP_004134932.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
 gi|449479547|ref|XP_004155632.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 638

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 193/480 (40%), Positives = 287/480 (59%), Gaps = 7/480 (1%)

Query: 67  IKDTASWNTMISGFVQKKNMAKARDLFLAMPE-KNSVSWSAMISGYIECGQLDKAVELFK 125
           +KD    N +I  +     +  A+ +F  +P  ++ VSW++MI G++  GQ+  A +LF 
Sbjct: 165 VKDVFVRNALIHLYCTCCRVESAKQVFDEVPSSRDVVSWNSMIVGFVRLGQISVAQKLFV 224

Query: 126 VAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHL 185
             P K V++W  +ISG      V+N   E  L   + +    +RPN + L S+L   + L
Sbjct: 225 EMPEKDVISWGTIISGC-----VQNGELEKALDYFKELGEQKLRPNEAILVSLLAAAAQL 279

Query: 186 SSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMI 245
            +L+ GK++H +          +  T L+ MY KCG ++++  LF  +  KD  +WN MI
Sbjct: 280 GTLEYGKRIHSIANSLRFPMTASLGTALVDMYAKCGCIDESRFLFDRMPEKDKWSWNVMI 339

Query: 246 SGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGI 305
            G A HG G++AL LF+K   +G  P ++TF+ +L AC+ AGLV  G  +F  M + YGI
Sbjct: 340 CGLATHGLGQEALALFEKFLTQGFHPVNVTFIGVLTACSRAGLVSEGKHFFKLMTDTYGI 399

Query: 306 AAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAM 365
             + +HY CMVDLL RAG + +AV++I +MP  P P ++ ++L +C+VH  ++L E    
Sbjct: 400 EPEMEHYGCMVDLLSRAGFVYDAVEMINRMPAPPDPVLWASVLGSCQVHGFIELGEEIGN 459

Query: 366 NLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEF 425
            L  ++P +  G YVQLA I+A ++KW+DV+++R  M E N  K+ G+S IE    VH F
Sbjct: 460 KLIQMDPTHN-GHYVQLARIFARLRKWEDVSKVRRLMAERNSNKIAGWSLIEAEGRVHRF 518

Query: 426 RSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAF 485
            +GD+ H     I++ L+ +  R+  AGY  ++   LH + EE KE  +  HSE+LAIAF
Sbjct: 519 VAGDKEHERTTEIYKMLEIMGVRIAAAGYSANVSSVLHDIEEEEKENAIKEHSERLAIAF 578

Query: 486 GLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           GL+    G  IR+ KNLRVCGDCH  +K IS + +REIIVRD +RFHHFK G CSC DYW
Sbjct: 579 GLLVTKDGDCIRIIKNLRVCGDCHEVSKIISLVFEREIIVRDGSRFHHFKKGICSCQDYW 638



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 83/318 (26%), Positives = 129/318 (40%), Gaps = 45/318 (14%)

Query: 59  FDFFQRLP---IKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECG 115
           F FF  LP   +    S      G  Q K  A AR L L +     ++   +    I   
Sbjct: 20  FHFFSTLPNPRLPPPFSSLPPTPGITQIKQ-AHARILVLGLANDGRITSHLLAFLAISSS 78

Query: 116 QL--DKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI-GLGIRPNA 172
            L  D A+ ++      +V A   MI  ++K     +S     + L   M       PN 
Sbjct: 79  SLPSDYALSIYNSISHPTVFATNNMIRCFVKGDLPRHS-----ISLYSHMCRSFVAAPNK 133

Query: 173 SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLED------- 225
            +L+ VL  CS+  +++ G QV   V K    KD      LI +YC C  +E        
Sbjct: 134 HTLTFVLQACSNAFAIREGAQVQTHVIKLGFVKDVFVRNALIHLYCTCCRVESAKQVFDE 193

Query: 226 -------------------------ACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRL 260
                                    A KLF+E+  KDV++W  +ISG  Q+G+ EKAL  
Sbjct: 194 VPSSRDVVSWNSMIVGFVRLGQISVAQKLFVEMPEKDVISWGTIISGCVQNGELEKALDY 253

Query: 261 FDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLG 320
           F ++ ++ ++P+    V+LL A    G ++ G +   S+ N           T +VD+  
Sbjct: 254 FKELGEQKLRPNEAILVSLLAAAAQLGTLEYG-KRIHSIANSLRFPMTASLGTALVDMYA 312

Query: 321 RAGKLVEAVDLIKKMPFK 338
           + G + E+  L  +MP K
Sbjct: 313 KCGCIDESRFLFDRMPEK 330


>gi|86439692|emb|CAJ19324.1| selenium binding protein [Triticum aestivum]
          Length = 624

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 210/555 (37%), Positives = 314/555 (56%), Gaps = 39/555 (7%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
           NS++  + K R  L DA+ +FD++ + D+VS+  +++    N             +P++ 
Sbjct: 90  NSLIHMYCKCRSVL-DARNVFDQMRRKDMVSWTSLIAGYAQND------------MPVEA 136

Query: 70  TASWNTMISGFVQKKNMAKARDLFLAMPEKNS------------VSW-------SAMISG 110
                 M+ G  +      A  L  A    +S              W       SA++  
Sbjct: 137 IGLLPGMLKGRFKPNGFTFASLLKAAGAYADSGTGRQIHALAVKCGWHEDVYVGSALLDM 196

Query: 111 YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRP 170
           Y  CG++D A  +F     K+ V+W A+ISG+ + G       E  L     M+  G   
Sbjct: 197 YARCGKMDMATAVFDKLDSKNGVSWNALISGFARKGD-----GESALMTFAEMLRNGFEA 251

Query: 171 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 230
              + SSV    + L +L+ GK VH  V KS           L+ MY K G + DA K+F
Sbjct: 252 THFTYSSVFSSIARLGALEQGKWVHAHVIKSRQKLTAFVGNTLLDMYAKSGSMIDARKVF 311

Query: 231 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVD 290
             +  KD+VTWN+M++ +AQ+G G++A+  F++M+  G+  + ITF+ +L AC+H GLV 
Sbjct: 312 DRVDNKDLVTWNSMLTAFAQYGLGKEAVSHFEEMRKSGVYLNQITFLCILTACSHGGLVK 371

Query: 291 LGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSA 350
            G +YF+ M+ +Y +  + DHY  +V LLGRAG L  A+  I KMP +P  A++G LL+A
Sbjct: 372 EGKRYFE-MMKEYDLEPEIDHYVTVVALLGRAGLLNYALVFIFKMPMEPTAAVWGALLAA 430

Query: 351 CRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKM 410
           CR+HK   + +FAA ++F L+P ++ G  V L NIYA+  +WD  AR+R+ MK   V K 
Sbjct: 431 CRMHKNAKVGQFAADHVFELDPDDS-GPPVLLYNIYASTGQWDAAARVRMMMKTTGVKKE 489

Query: 411 PGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVK 470
           P  SW+E+   VH F + D  HP+   I++   E+ K+++  GYVPD+++ L  V ++ K
Sbjct: 490 PACSWVEMENSVHMFVANDDTHPQAEEIYKMWGEISKKIRKEGYVPDMDYVLLHVDDQEK 549

Query: 471 EQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTR 530
           E  L +HSEKLA+AF LI++P G  IR+ KN+R+CGDCH A KYIS +  REI+VRDT R
Sbjct: 550 EANLQYHSEKLALAFALIEMPAGATIRIMKNIRICGDCHSAFKYISKVFGREIVVRDTNR 609

Query: 531 FHHFKDGTCSCGDYW 545
           FHHF  G+CSCGDYW
Sbjct: 610 FHHFSSGSCSCGDYW 624



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 59/224 (26%), Positives = 111/224 (49%), Gaps = 9/224 (4%)

Query: 73  WNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISGYIECGQLDKAVELFKVAP 128
           + + I+   Q KN+  AR +   +       ++   +++I  Y +C  +  A  +F    
Sbjct: 54  YRSFITACAQSKNLEDARKIHAHLGSSRFAGDAFLDNSLIHMYCKCRSVLDARNVFDQMR 113

Query: 129 VKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSL 188
            K +V+WT++I+GY      +N    + + LL  M+    +PN  + +S+L      +  
Sbjct: 114 RKDMVSWTSLIAGY-----AQNDMPVEAIGLLPGMLKGRFKPNGFTFASLLKAAGAYADS 168

Query: 189 QLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGY 248
             G+Q+H L  K    +D    + L+ MY +CG ++ A  +F ++  K+ V+WNA+ISG+
Sbjct: 169 GTGRQIHALAVKCGWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALISGF 228

Query: 249 AQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 292
           A+ G GE AL  F +M   G +    T+ ++  +    G ++ G
Sbjct: 229 ARKGDGESALMTFAEMLRNGFEATHFTYSSVFSSIARLGALEQG 272



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 88/188 (46%), Gaps = 13/188 (6%)

Query: 157 LKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISM 216
           L+ L ++    + P      S +  C+   +L+  +++H  +  S    D      LI M
Sbjct: 36  LRDLDLLDAGELAPTPRVYRSFITACAQSKNLEDARKIHAHLGSSRFAGDAFLDNSLIHM 95

Query: 217 YCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITF 276
           YCKC  + DA  +F +++RKD+V+W ++I+GYAQ+    +A+ L   M     KP+  TF
Sbjct: 96  YCKCRSVLDARNVFDQMRRKDMVSWTSLIAGYAQNDMPVEAIGLLPGMLKGRFKPNGFTF 155

Query: 277 VALLLACNHAGLVDLGIQYFDSMVNDYGIAAK----PDHY--TCMVDLLGRAGKLVEAVD 330
            +LL A         G Q        + +A K     D Y  + ++D+  R GK+  A  
Sbjct: 156 ASLLKAAGAYADSGTGRQI-------HALAVKCGWHEDVYVGSALLDMYARCGKMDMATA 208

Query: 331 LIKKMPFK 338
           +  K+  K
Sbjct: 209 VFDKLDSK 216



 Score = 40.4 bits (93), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 59/298 (19%), Positives = 120/298 (40%), Gaps = 47/298 (15%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           ++ K  V+WN++++GFA+ +G  + A   F ++ +    + +   S +          F 
Sbjct: 213 LDSKNGVSWNALISGFAR-KGDGESALMTFAEMLRNGFEATHFTYSSV----------FS 261

Query: 61  FFQRLPIKDTASW-----------------NTMISGFVQKKNMAKARDLFLAMPEKNSVS 103
              RL   +   W                 NT++  + +  +M  AR +F  +  K+ V+
Sbjct: 262 SIARLGALEQGKWVHAHVIKSRQKLTAFVGNTLLDMYAKSGSMIDARKVFDRVDNKDLVT 321

Query: 104 WSAMISGYIECGQLDKAV----ELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKL 159
           W++M++ + + G   +AV    E+ K     + + +  +++     G V     ++G + 
Sbjct: 322 WNSMLTAFAQYGLGKEAVSHFEEMRKSGVYLNQITFLCILTACSHGGLV-----KEGKRY 376

Query: 160 LRMMIGLGIRPNASSLSSV--LLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLIS-- 215
             MM    + P      +V  LLG + L +  L       +FK P+         L++  
Sbjct: 377 FEMMKEYDLEPEIDHYVTVVALLGRAGLLNYAL-----VFIFKMPMEPTAAVWGALLAAC 431

Query: 216 -MYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPD 272
            M+      + A     E+   D      + + YA  G+ + A R+   MK  G+K +
Sbjct: 432 RMHKNAKVGQFAADHVFELDPDDSGPPVLLYNIYASTGQWDAAARVRMMMKTTGVKKE 489


>gi|326504484|dbj|BAJ91074.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 823

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 210/532 (39%), Positives = 296/532 (55%), Gaps = 63/532 (11%)

Query: 76  MISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECG-QLDKAVELF---------- 124
           M +    +++M  AR +F  MP  N +SW+A+ISGY++CG Q + AVEL           
Sbjct: 293 MYTKLQMEQSMECARKVFKRMPTHNVMSWTALISGYVQCGGQENNAVELLCEMLNESIEP 352

Query: 125 -----------------------------KVAPVKSVVAWTAMISGYMKFGYVE------ 149
                                        K +     V   A++S Y + G +E      
Sbjct: 353 NHLTYSSLLKACANLSDQDSGRQIHARVMKTSIGNVNVVGNALVSMYAESGCMEEARKAF 412

Query: 150 NSWAEDGLKLLRMMIGLGIRPNAS---SLSSVLLGCSHLSSLQL------------GKQV 194
           +   E  L      IG   R NAS    + S+ +G S  +   L            G+Q+
Sbjct: 413 DQLYERNLLSTSSDIGETGRSNASWSSQIESMDVGVSTFTFASLLSAAATVGLPTKGQQL 472

Query: 195 HQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR-KDVVTWNAMISGYAQHGK 253
           H L  K+    D      L+SMY +CG L+DAC+ F E++   +V++W ++IS  A+HG 
Sbjct: 473 HALSIKTGFESDKGISNSLVSMYSRCGYLDDACRAFDEMEDDHNVISWTSIISALAKHGH 532

Query: 254 GEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYT 313
            E+AL LF  M   G+KP+ +T++A+L AC+H GLV  G +YF SM  D+ +  + +HY 
Sbjct: 533 AERALSLFHDMILSGVKPNDVTYIAVLSACSHVGLVKEGKEYFRSMQKDHRLIPRMEHYA 592

Query: 314 CMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPA 373
           CMVDLL R+G + EA++ I +MP K    ++ TLL ACR ++ +++ E AA ++ +L P 
Sbjct: 593 CMVDLLARSGLVQEALEFINEMPCKADALVWKTLLGACRTYENIEIGEIAARHVIDLEPQ 652

Query: 374 NAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHP 433
           + A  YV L+N+YA    WD+VARIR  M+  N+ K  G SW+ VG  +HEFR+GD  HP
Sbjct: 653 DPAP-YVLLSNLYAHGGLWDEVARIRSLMRHRNLSKETGLSWMHVGNTIHEFRAGDTSHP 711

Query: 434 ELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLG 493
               I+ KL  L + +K  GYVPD    LH + +++KEQ LL HSEK+A+AFGLI     
Sbjct: 712 RAQEIYAKLAVLIREIKDIGYVPDTSIVLHDMSDKLKEQCLLQHSEKIAVAFGLITTLPT 771

Query: 494 TPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
            PIR+FKNLRVC DCH A KYIS    REII+RD+ RFH  KDG CSCG+YW
Sbjct: 772 KPIRIFKNLRVCADCHSAIKYISKSTGREIILRDSNRFHRMKDGKCSCGEYW 823



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 99/392 (25%), Positives = 170/392 (43%), Gaps = 93/392 (23%)

Query: 42  NIMLSCILLN----SDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP 97
           ++ + C L++    + D+VAA   F  L  +    W  MI+ +VQ     KA +LFL M 
Sbjct: 182 DVSVGCALIDMFARNGDLVAARKVFNGLVERTVVVWTLMITRYVQGGCAGKAVELFLGML 241

Query: 98  EK----NSVSWSAMISGYIE--------------------------CG--------QLDK 119
           E     +  + S+M+S   E                          CG        Q+++
Sbjct: 242 EDGFEPDGYTMSSMVSACAEQGSAGLGQQLHSLVLRLGLVSDTCVSCGLVDMYTKLQMEQ 301

Query: 120 AVE----LFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSL 175
           ++E    +FK  P  +V++WTA+ISGY++ G  EN    + ++LL  M+   I PN  + 
Sbjct: 302 SMECARKVFKRMPTHNVMSWTALISGYVQCGGQEN----NAVELLCEMLNESIEPNHLTY 357

Query: 176 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR 235
           SS+L  C++LS    G+Q+H  V K+ +         L+SMY + G +E+A K F ++  
Sbjct: 358 SSLLKACANLSDQDSGRQIHARVMKTSIGNVNVVGNALVSMYAESGCMEEARKAFDQLYE 417

Query: 236 KDVV------------------------------TWNAMISGYAQHG---KGEKALRLFD 262
           ++++                              T+ +++S  A  G   KG++   L  
Sbjct: 418 RNLLSTSSDIGETGRSNASWSSQIESMDVGVSTFTFASLLSAAATVGLPTKGQQLHALSI 477

Query: 263 KMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRA 322
           K   E  K  S + V++   C   G +D   + FD M +D+ + +    +T ++  L + 
Sbjct: 478 KTGFESDKGISNSLVSMYSRC---GYLDDACRAFDEMEDDHNVIS----WTSIISALAKH 530

Query: 323 GKLVEAVDLIKKMPF---KPQPAIFGTLLSAC 351
           G    A+ L   M     KP    +  +LSAC
Sbjct: 531 GHAERALSLFHDMILSGVKPNDVTYIAVLSAC 562



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 69/236 (29%), Positives = 109/236 (46%), Gaps = 47/236 (19%)

Query: 70  TASWNT-------MISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVE 122
           T  W T       +I  F +  ++  AR +F  + E+  V W+ MI+ Y++ G   KAVE
Sbjct: 176 TGFWGTDVSVGCALIDMFARNGDLVAARKVFNGLVERTVVVWTLMITRYVQGGCAGKAVE 235

Query: 123 LFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGC 182
           LF                     G +E+                G  P+  ++SS++  C
Sbjct: 236 LF--------------------LGMLED----------------GFEPDGYTMSSMVSAC 259

Query: 183 SHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKC---GDLEDACKLFLEIQRKDVV 239
           +   S  LG+Q+H LV +  L  DT     L+ MY K      +E A K+F  +   +V+
Sbjct: 260 AEQGSAGLGQQLHSLVLRLGLVSDTCVSCGLVDMYTKLQMEQSMECARKVFKRMPTHNVM 319

Query: 240 TWNAMISGYAQHGKGE-KALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ 294
           +W A+ISGY Q G  E  A+ L  +M +E ++P+ +T+ +LL AC +    D G Q
Sbjct: 320 SWTALISGYVQCGGQENNAVELLCEMLNESIEPNHLTYSSLLKACANLSDQDSGRQ 375



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 68/240 (28%), Positives = 117/240 (48%), Gaps = 11/240 (4%)

Query: 105 SAMISGYIECGQLDKAVELFK-VAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMM 163
           +++++ Y +CG +  A  +F  +  ++ +V+WTAM      F    N   ++ L LL  M
Sbjct: 83  NSLLTMYSKCGHVRAARRVFDGMRGLRDLVSWTAM-----AFCLTRNGAEQEALVLLGEM 137

Query: 164 IGLGIRPNASSLSSVLLGCSHLSSLQL-GKQVHQLVFKSPL-CKDTTALTPLISMYCKCG 221
           +  G+RPNA +L +    C      +  G  V     K+     D +    LI M+ + G
Sbjct: 138 LESGLRPNAFTLCAAAHACFPGELFRSSGGTVLGFAIKTGFWGTDVSVGCALIDMFARNG 197

Query: 222 DLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLL 281
           DL  A K+F  +  + VV W  MI+ Y Q G   KA+ LF  M ++G +PD  T  +++ 
Sbjct: 198 DLVAARKVFNGLVERTVVVWTLMITRYVQGGCAGKAVELFLGMLEDGFEPDGYTMSSMVS 257

Query: 282 ACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQP 341
           AC   G   LG Q   S+V   G+ +       +VD+  +  ++ ++++  +K+ FK  P
Sbjct: 258 ACAEQGSAGLG-QQLHSLVLRLGLVSDTCVSCGLVDMYTKL-QMEQSMECARKV-FKRMP 314



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 54/96 (56%), Gaps = 2/96 (2%)

Query: 190 LGKQVH-QLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR-KDVVTWNAMISG 247
           LG+ +H +L+    L  D      L++MY KCG +  A ++F  ++  +D+V+W AM   
Sbjct: 61  LGRALHRRLLGTEVLDADALVANSLLTMYSKCGHVRAARRVFDGMRGLRDLVSWTAMAFC 120

Query: 248 YAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC 283
             ++G  ++AL L  +M + G++P++ T  A   AC
Sbjct: 121 LTRNGAEQEALVLLGEMLESGLRPNAFTLCAAAHAC 156


>gi|297800728|ref|XP_002868248.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314084|gb|EFH44507.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 725

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 215/559 (38%), Positives = 322/559 (57%), Gaps = 22/559 (3%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILL------NSDD 54
           M+ +  V WN+++  + +  G L +A +LF+++   +V+   ++L  I+       N   
Sbjct: 175 MSQRDVVTWNTMIERYCRF-GLLDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRY 233

Query: 55  VVAAFDFFQRLPIK-DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE 113
             A +DF     ++ DT     +++ +     M  A + F  M  +N    +AM+SGY +
Sbjct: 234 NRAIYDFLIENDVRMDTHLLTALVTMYAGAGCMDMAMEFFRKMSVRNLFVSTAMVSGYSK 293

Query: 114 CGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNAS 173
            G+LD A  +F    +K +V WT MIS Y      E+   ++ L++   M   GI+P+  
Sbjct: 294 AGRLDDARVIFDQTEMKDLVCWTTMISAY-----AESDHPQEALRVFEEMCCSGIKPDVV 348

Query: 174 SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI 233
           ++ SV+  C +L +L   K VH+    + L         LI+MY KCG L+ A  +F ++
Sbjct: 349 TMLSVISACVNLGTLDKAKWVHRYTHLNGLESVLPIDNALINMYAKCGGLDAARDVFEKM 408

Query: 234 QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGI 293
             ++VV+W++MI+ +A HG+   +L LF +MK E ++P+ +TFV +L  C+H+GLV+ G 
Sbjct: 409 PTRNVVSWSSMINAFAMHGEASDSLSLFAQMKQENVEPNEVTFVGVLYGCSHSGLVEEGK 468

Query: 294 QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRV 353
           + F SM ++Y I  K +HY CMVDL GRA  L EA+++I+ MP  P   I+G+L+SACRV
Sbjct: 469 KIFASMTDEYNITPKIEHYGCMVDLFGRANLLREALEVIESMPMAPNVVIWGSLMSACRV 528

Query: 354 HKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGY 413
           H  L+L E AA  +  L P +  G  V ++NIYA   +WD V  IR  M++  V K  G 
Sbjct: 529 HGELELGELAAKRILKLEP-DHDGALVLMSNIYAREYRWDYVRIIRWIMEKKKVFKEKGL 587

Query: 414 SWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQL 473
           S I++    HEF  GD+ H +   I+ KL E+  ++KLAGYVPD    L  V EE K+ L
Sbjct: 588 SRIDLNGKSHEFLIGDKRHKQSNEIYTKLYEVVSKLKLAGYVPDGGSVLVDVEEEEKKDL 647

Query: 474 LLFHSEKLAIAFGLI-------KVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVR 526
           +L+HSEKLA+ FGL+       K   G  IR+ KNLRVC DCH   K +S + + EIIVR
Sbjct: 648 VLWHSEKLALCFGLMNKEKEEEKGSCGV-IRIVKNLRVCEDCHAFFKLVSKVYELEIIVR 706

Query: 527 DTTRFHHFKDGTCSCGDYW 545
           D TRFH +KDG CSC DYW
Sbjct: 707 DRTRFHRYKDGLCSCRDYW 725



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 94/392 (23%), Positives = 175/392 (44%), Gaps = 56/392 (14%)

Query: 26  AQELFDKI-PQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKK 84
           A  LF  I P P+ + +N +L   L  S +  A   F+QR  I+        IS     K
Sbjct: 66  ALNLFSSISPLPESIVFNSLLR-DLSRSGEPRATILFYQR--IRHVGGRFDRISFPPILK 122

Query: 85  NMAKARDLFLAMPEKNSVSW-----------SAMISGYIECGQLDKAVELFKVAPVKSVV 133
            ++K   LF  M E +  ++           + ++  Y  CG+++ A  +F     + VV
Sbjct: 123 AVSKVSALFEGM-ELHGFAFKIATLSDPFVETGLMDMYAACGRINYARNVFDEMSQRDVV 181

Query: 134 AWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ 193
            W  MI  Y +FG +     ++  KL   M    + P+   L +++  C    +++  + 
Sbjct: 182 TWNTMIERYCRFGLL-----DEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRA 236

Query: 194 VHQLVFKSPLCKDTTALTPLISMYC-------------------------------KCGD 222
           ++  + ++ +  DT  LT L++MY                                K G 
Sbjct: 237 IYDFLIENDVRMDTHLLTALVTMYAGAGCMDMAMEFFRKMSVRNLFVSTAMVSGYSKAGR 296

Query: 223 LEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA 282
           L+DA  +F + + KD+V W  MIS YA+    ++ALR+F++M   G+KPD +T ++++ A
Sbjct: 297 LDDARVIFDQTEMKDLVCWTTMISAYAESDHPQEALRVFEEMCCSGIKPDVVTMLSVISA 356

Query: 283 CNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPA 342
           C + G +D   ++     +  G+ +       ++++  + G L  A D+ +KMP +    
Sbjct: 357 CVNLGTLDKA-KWVHRYTHLNGLESVLPIDNALINMYAKCGGLDAARDVFEKMPTR-NVV 414

Query: 343 IFGTLLSACRVHKRL--DLAEFAAMNLFNLNP 372
            + ++++A  +H      L+ FA M   N+ P
Sbjct: 415 SWSSMINAFAMHGEASDSLSLFAQMKQENVEP 446



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/233 (25%), Positives = 106/233 (45%), Gaps = 6/233 (2%)

Query: 166 LGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLED 225
           +G R +  S   +L   S +S+L  G ++H   FK     D    T L+ MY  CG +  
Sbjct: 108 VGGRFDRISFPPILKAVSKVSALFEGMELHGFAFKIATLSDPFVETGLMDMYAACGRINY 167

Query: 226 ACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNH 285
           A  +F E+ ++DVVTWN MI  Y + G  ++A +LF++MKD  + PD +    ++ AC  
Sbjct: 168 ARNVFDEMSQRDVVTWNTMIERYCRFGLLDEAFKLFEEMKDSNVMPDEMILCNIVSACGR 227

Query: 286 AGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFG 345
            G +      +D ++ +  +       T +V +   AG +  A++  +KM  +    +  
Sbjct: 228 TGNMRYNRAIYDFLIEN-DVRMDTHLLTALVTMYAGAGCMDMAMEFFRKMSVR-NLFVST 285

Query: 346 TLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARI 398
            ++S      RLD A      +F+        C+  + + YA      +  R+
Sbjct: 286 AMVSGYSKAGRLDDARV----IFDQTEMKDLVCWTTMISAYAESDHPQEALRV 334


>gi|297835482|ref|XP_002885623.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331463|gb|EFH61882.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 624

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 210/545 (38%), Positives = 318/545 (58%), Gaps = 19/545 (3%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
           N++L  +AK  G L++A+++FDK+P+ D V++  ++S    +     A   F Q L    
Sbjct: 90  NTLLNMYAKC-GSLEEARKVFDKMPERDFVTWTTLISGYSQHDRPFDALVLFNQMLRFGF 148

Query: 70  TASWNTMISGFVQKKNMAKARDL---------FLAMPEKNSVSWSAMISGYIECGQLDKA 120
           + +  T+ S  V K   A+ R                + N    SA++  Y   G +D A
Sbjct: 149 SPNEFTLSS--VIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDA 206

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLL 180
             +F     ++ V+W A+I+G+ +         E  L+L + M+  G RP+  S +S+  
Sbjct: 207 QLVFDALESRNDVSWNALIAGHAR-----RCGTEKALELFQGMLREGFRPSHFSYASLFG 261

Query: 181 GCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVT 240
            CS    L+ GK VH  + KS       A   L+ MY K G + DA K+F  + ++DVV+
Sbjct: 262 ACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVS 321

Query: 241 WNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV 300
           WN++++ YAQHG G +A+  F++M+  G++P+ I+F+++L AC+H+GL+D G  Y++ M 
Sbjct: 322 WNSLLTAYAQHGFGNEAVCWFEEMRRGGIRPNEISFLSVLTACSHSGLLDEGWHYYELMK 381

Query: 301 NDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLA 360
            D GI  +  HY  +VDLLGRAG L  A+  I++MP +P  AI+  LL+ACR+HK  +L 
Sbjct: 382 KD-GIVLEAWHYVTIVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALLNACRMHKNTELG 440

Query: 361 EFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGT 420
            +AA ++F L+P +  G +V L NIYA+  +W+D AR+R  MKE+ V K P  SW+E+  
Sbjct: 441 AYAAEHVFELDPDDP-GPHVILYNIYASGGRWNDAARVRKKMKESGVKKEPACSWVEIEN 499

Query: 421 VVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEK 480
            +H F + D  HP+   I  K +E+  ++K  GYVPD    +  V ++ +E  L +HSEK
Sbjct: 500 AIHMFVANDERHPQREEIARKWEEVLAKIKELGYVPDTSHVIVHVDQQEREVNLQYHSEK 559

Query: 481 LAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCS 540
           +A+AF L+  P G+ I + KN+RVCGDCH A K  S    REIIVRDT RFHHFKDG CS
Sbjct: 560 IALAFALLNTPPGSTIHIKKNIRVCGDCHSAIKLASKAVGREIIVRDTNRFHHFKDGACS 619

Query: 541 CGDYW 545
           C DYW
Sbjct: 620 CKDYW 624



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 75/294 (25%), Positives = 141/294 (47%), Gaps = 12/294 (4%)

Query: 65  LPIKDTASWNTMISGFVQKKNMAKAR----DLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
           +P+ D   +NT++      K + + R     L  ++   + V  + +++ Y +CG L++A
Sbjct: 47  IPV-DRRFYNTLLKKCTVFKLLTQGRIVHGHLIQSIFRHDLVMNNTLLNMYAKCGSLEEA 105

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLL 180
            ++F   P +  V WT +ISGY      ++    D L L   M+  G  PN  +LSSV+ 
Sbjct: 106 RKVFDKMPERDFVTWTTLISGYS-----QHDRPFDALVLFNQMLRFGFSPNEFTLSSVIK 160

Query: 181 GCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVT 240
             +       G Q+H    K     +    + L+ +Y + G ++DA  +F  ++ ++ V+
Sbjct: 161 AAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVS 220

Query: 241 WNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV 300
           WNA+I+G+A+    EKAL LF  M  EG +P   ++ +L  AC+  G ++ G      M+
Sbjct: 221 WNALIAGHARRCGTEKALELFQGMLREGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMI 280

Query: 301 NDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVH 354
              G          ++D+  ++G + +A  +  ++  K     + +LL+A   H
Sbjct: 281 KS-GEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLA-KRDVVSWNSLLTAYAQH 332



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 60/264 (22%), Positives = 105/264 (39%), Gaps = 47/264 (17%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQ----PDVVSYNIML----SCILLNS 52
           +  +  V+WN+++AG A++ G  K A ELF  + +    P   SY  +     S   L  
Sbjct: 213 LESRNDVSWNALIAGHARRCGTEK-ALELFQGMLREGFRPSHFSYASLFGACSSTGFLEQ 271

Query: 53  DDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYI 112
              V A+       +   A  NT++  + +  ++  AR +F  + +++ VSW+++++ Y 
Sbjct: 272 GKWVHAYMIKSGEKLVAFAG-NTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYA 330

Query: 113 ECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNA 172
           + G                             FG     W E+       M   GIRPN 
Sbjct: 331 QHG-----------------------------FGNEAVCWFEE-------MRRGGIRPNE 354

Query: 173 SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLE 232
            S  SVL  CSH   L  G   ++L+ K  +  +      ++ +  + GDL  A +   E
Sbjct: 355 ISFLSVLTACSHSGLLDEGWHYYELMKKDGIVLEAWHYVTIVDLLGRAGDLNRALRFIEE 414

Query: 233 IQ-RKDVVTWNAMISGYAQHGKGE 255
           +        W A+++    H   E
Sbjct: 415 MPIEPTAAIWKALLNACRMHKNTE 438


>gi|359491264|ref|XP_002280276.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 684

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 189/460 (41%), Positives = 282/460 (61%), Gaps = 4/460 (0%)

Query: 86  MAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKF 145
           M  AR +F  M E++  SW++++ GY + G++D+A ELF + PV++ V+W  MISG++  
Sbjct: 229 MEDARKVFNQMSERDVFSWTSLLGGYAKHGEMDRACELFNMMPVRNDVSWAVMISGFLGC 288

Query: 146 GYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCK 205
           G     + E       M+    + PN + L  VL  C+HL +L  G  +H  + K  + +
Sbjct: 289 G----RYPEALTFFCNMLCDDRVNPNEAVLVCVLSACAHLGALDQGNWIHLYIDKIGIRQ 344

Query: 206 DTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMK 265
            +   T LI MY KCG ++ A ++F  I ++DV+++ +MISG + HG G+ ALR+F +M 
Sbjct: 345 SSNISTALIDMYAKCGRIDCASRVFNGICKRDVLSFTSMISGLSYHGLGKDALRVFYQML 404

Query: 266 DEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKL 325
           DE + P+ IT + +L  C+H+GLV+ G     +M + +GIA K +HY C +DLLGRAG L
Sbjct: 405 DENVMPNEITILGVLNGCSHSGLVEEGSSILANMESLWGIAPKIEHYGCYIDLLGRAGYL 464

Query: 326 VEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANI 385
             A++++K MP +P   I+  LLSA R+H  ++L E    ++  L  ++  G  V L+N+
Sbjct: 465 ERALEVVKTMPMEPDIVIWRALLSASRIHHNVNLGEQIISHIGQLKSSDHNGGEVLLSNL 524

Query: 386 YAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKEL 445
           YA++ +W+ V  +R  M +      PG SWIEV  +VHEFR  D++HP++V I  KL E+
Sbjct: 525 YASLGRWERVTEMRKLMVDRRSESSPGCSWIEVNGLVHEFRVADQLHPQIVEIRNKLNEI 584

Query: 446 EKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVC 505
            KR+   GY  +       + EE KEQ + +HSEKLAIAFGL+    GT IR+ KNLR C
Sbjct: 585 LKRLSQIGYSANTMQVSFDLNEEEKEQAVAWHSEKLAIAFGLMSTEPGTLIRIVKNLRTC 644

Query: 506 GDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
            DCH A K IS +  REI+VRD +RFH F +G CSC D+W
Sbjct: 645 EDCHSALKTISQVYGREIVVRDRSRFHTFIEGDCSCKDFW 684



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 60/234 (25%), Positives = 103/234 (44%), Gaps = 40/234 (17%)

Query: 127 APVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLG---IRPNASSLSSVLLGCS 183
           +P   +  W  MI  Y K   + NS     L  LRM+   G   + P+  + + V+  CS
Sbjct: 134 SPSPPIKLWNVMIRTYSK---IRNSQEPIHL-FLRMLTLDGPMQVVPDEYTFTFVITSCS 189

Query: 184 HLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNA 243
           H  SL  G+ VH +V KS    +      +I+M      +EDA K+F ++  +DV +W +
Sbjct: 190 HQISLIYGEIVHGMVVKSGFESNLYVGNSVINMCSVFARMEDARKVFNQMSERDVFSWTS 249

Query: 244 MISGYAQHGKGEKALRLFDKMK--------------------------------DEGMKP 271
           ++ GYA+HG+ ++A  LF+ M                                 D+ + P
Sbjct: 250 LLGGYAKHGEMDRACELFNMMPVRNDVSWAVMISGFLGCGRYPEALTFFCNMLCDDRVNP 309

Query: 272 DSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKL 325
           +    V +L AC H G +D G  +    ++  GI    +  T ++D+  + G++
Sbjct: 310 NEAVLVCVLSACAHLGALDQG-NWIHLYIDKIGIRQSSNISTALIDMYAKCGRI 362



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 70/287 (24%), Positives = 129/287 (44%), Gaps = 35/287 (12%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M+ +   +W S+L G+AK  G++  A ELF+ +P  + VS+ +M+S   L       A  
Sbjct: 239 MSERDVFSWTSLLGGYAKH-GEMDRACELFNMMPVRNDVSWAVMISG-FLGCGRYPEALT 296

Query: 61  FFQRLPIKDTASWNTMI----------SGFVQKKNMAKARDLFLAMPEKNSVSWSAMISG 110
           FF  +   D  + N  +           G + + N        + + + +++S +A+I  
Sbjct: 297 FFCNMLCDDRVNPNEAVLVCVLSACAHLGALDQGNWIHLYIDKIGIRQSSNIS-TALIDM 355

Query: 111 YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRP 170
           Y +CG++D A  +F     + V+++T+MISG    G       +D L++   M+   + P
Sbjct: 356 YAKCGRIDCASRVFNGICKRDVLSFTSMISGLSYHGL-----GKDALRVFYQMLDENVMP 410

Query: 171 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMY-C------KCGDL 223
           N  ++  VL GCSH   ++ G  +   +      +    + P I  Y C      + G L
Sbjct: 411 NEITILGVLNGCSHSGLVEEGSSILANM------ESLWGIAPKIEHYGCYIDLLGRAGYL 464

Query: 224 EDACKLFLEI-QRKDVVTWNAMISGYAQHGK---GEKALRLFDKMKD 266
           E A ++   +    D+V W A++S    H     GE+ +    ++K 
Sbjct: 465 ERALEVVKTMPMEPDIVIWRALLSASRIHHNVNLGEQIISHIGQLKS 511


>gi|334185549|ref|NP_188908.2| uncharacterized protein [Arabidopsis thaliana]
 gi|332643144|gb|AEE76665.1| uncharacterized protein [Arabidopsis thaliana]
          Length = 938

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 196/478 (41%), Positives = 287/478 (60%), Gaps = 11/478 (2%)

Query: 72  SW----NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVA 127
           SW    N +I  +++      A  +F  M  K  V+W+++++GY+E G++D A E F+  
Sbjct: 370 SWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETM 429

Query: 128 PVKSVVAWTAMISGYMKFGYVENSWAEDGLKLL-RMMIGLGIRPNASSLSSVLLGCSHLS 186
           P K++V+W  +ISG      V+ S  E+ +++   M    G+  +  ++ S+   C HL 
Sbjct: 430 PEKNIVSWNTIISGL-----VQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLG 484

Query: 187 SLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMIS 246
           +L L K ++  + K+ +  D    T L+ M+ +CGD E A  +F  +  +DV  W A I 
Sbjct: 485 ALDLAKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIG 544

Query: 247 GYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIA 306
             A  G  E+A+ LFD M ++G+KPD + FV  L AC+H GLV  G + F SM+  +G++
Sbjct: 545 AMAMAGNAERAIELFDDMIEQGLKPDGVAFVGALTACSHGGLVQQGKEIFYSMLKLHGVS 604

Query: 307 AKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMN 366
            +  HY CMVDLLGRAG L EAV LI+ MP +P   I+ +LL+ACRV   +++A +AA  
Sbjct: 605 PEDVHYGCMVDLLGRAGLLEEAVQLIEDMPMEPNDVIWNSLLAACRVQGNVEMAAYAAEK 664

Query: 367 LFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFR 426
           +  L P    G YV L+N+YA+  +W+D+A++RLSMKE  + K PG S I++    HEF 
Sbjct: 665 IQVLAPERT-GSYVLLSNVYASAGRWNDMAKVRLSMKEKGLRKPPGTSSIQIRGKTHEFT 723

Query: 427 SGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFG 486
           SGD  HPE+ +I   L E+ +R    G+VPDL   L  V E+ K  +L  HSEKLA+A+G
Sbjct: 724 SGDESHPEMPNIEAMLDEVSQRASHLGHVPDLSNVLMDVDEKEKIFMLSRHSEKLAMAYG 783

Query: 487 LIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDY 544
           LI    GT IR+ KNLRVC DCH   K+ S +  REII+RD  RFH+ + G CSCGD+
Sbjct: 784 LISSNKGTTIRIVKNLRVCSDCHSFAKFASKVYNREIILRDNNRFHYIRQGKCSCGDF 841



 Score =  115 bits (287), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 89/366 (24%), Positives = 161/366 (43%), Gaps = 52/366 (14%)

Query: 13  LAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTAS 72
           L  F  + G+L  A+++FD++ + +VVS+  M+ C     D    A D F R+   +  +
Sbjct: 175 LVHFYAECGELDSARKVFDEMSERNVVSWTSMI-CGYARRDFAKDAVDLFFRMVRDEEVT 233

Query: 73  WNTM-----ISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMISGYIECGQLDKAVEL 123
            N++     IS   + +++     ++  +     E N +  SA++  Y++C  +D A  L
Sbjct: 234 PNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRL 293

Query: 124 FKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCS 183
           F      ++    AM S Y++ G        + L +  +M+  G+RP+  S+ S +  CS
Sbjct: 294 FDEYGASNLDLCNAMASNYVRQGLTR-----EALGVFNLMMDSGVRPDRISMLSAISSCS 348

Query: 184 HLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNA 243
            L ++  GK  H  V ++           LI MY KC   + A ++F  +  K VVTWN+
Sbjct: 349 QLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNS 408

Query: 244 MISGYAQHGKGEKALRLFDKMKD--------------------------------EGMKP 271
           +++GY ++G+ + A   F+ M +                                EG+  
Sbjct: 409 IVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNA 468

Query: 272 DSITFVALLLACNHAGLVDLG--IQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAV 329
           D +T +++  AC H G +DL   I Y+   +   GI       T +VD+  R G    A+
Sbjct: 469 DGVTMMSIASACGHLGALDLAKWIYYY---IEKNGIQLDVRLGTTLVDMFSRCGDPESAM 525

Query: 330 DLIKKM 335
            +   +
Sbjct: 526 SIFNSL 531



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 125/237 (52%), Gaps = 28/237 (11%)

Query: 77  ISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWT 136
           I G + K  M  A+DLF+          ++++  Y ECG+LD A ++F     ++VV+WT
Sbjct: 156 IHGLIVK--MGYAKDLFVQ---------NSLVHFYAECGELDSARKVFDEMSERNVVSWT 204

Query: 137 AMISGYMKFGYVENSWAEDGLKL-LRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVH 195
           +MI GY +       +A+D + L  RM+    + PN+ ++  V+  C+ L  L+ G++V+
Sbjct: 205 SMICGYAR-----RDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVY 259

Query: 196 QLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGE 255
             +  S +  +   ++ L+ MY KC  ++ A +LF E    ++   NAM S Y + G   
Sbjct: 260 AFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTR 319

Query: 256 KALRLFDKMKDEGMKPDSITFVALLLACN-----------HAGLVDLGIQYFDSMVN 301
           +AL +F+ M D G++PD I+ ++ + +C+           H  ++  G + +D++ N
Sbjct: 320 EALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICN 376



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 53/191 (27%), Positives = 98/191 (51%), Gaps = 6/191 (3%)

Query: 146 GYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCK 205
           GY  +    + + L   M+  GI P+  +    L  C+   +   G Q+H L+ K    K
Sbjct: 108 GYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIVKMGYAK 167

Query: 206 DTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKM- 264
           D      L+  Y +CG+L+ A K+F E+  ++VV+W +MI GYA+    + A+ LF +M 
Sbjct: 168 DLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFFRMV 227

Query: 265 KDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGK 324
           +DE + P+S+T V ++ AC     ++ G + + + + + GI       + +VD+  +   
Sbjct: 228 RDEEVTPNSVTMVCVISACAKLEDLETGEKVY-AFIRNSGIEVNDLMVSALVDMYMKC-- 284

Query: 325 LVEAVDLIKKM 335
              A+D+ K++
Sbjct: 285 --NAIDVAKRL 293



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 70/280 (25%), Positives = 135/280 (48%), Gaps = 26/280 (9%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNS--DDVVAA 58
           M+ KT V WNS++AG+  + G++  A E F+ +P+ ++VS+N ++S ++  S  ++ +  
Sbjct: 398 MSNKTVVTWNSIVAGYV-ENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEV 456

Query: 59  FDFFQRLPIKDTASWNTMIS-----GFVQKKNMAKARDLFLAMPEKNSVSW-----SAMI 108
           F   Q     + A   TM+S     G +   ++AK    ++   EKN +       + ++
Sbjct: 457 FCSMQSQEGVN-ADGVTMMSIASACGHLGALDLAKWIYYYI---EKNGIQLDVRLGTTLV 512

Query: 109 SGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGI 168
             +  CG  + A+ +F     + V AWTA I      G      AE  ++L   MI  G+
Sbjct: 513 DMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGN-----AERAIELFDDMIEQGL 567

Query: 169 RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK-SPLCKDTTALTPLISMYCKCGDLEDAC 227
           +P+  +    L  CSH   +Q GK++   + K   +  +      ++ +  + G LE+A 
Sbjct: 568 KPDGVAFVGALTACSHGGLVQQGKEIFYSMLKLHGVSPEDVHYGCMVDLLGRAGLLEEAV 627

Query: 228 KLF--LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMK 265
           +L   + ++  DV+ WN++++     G  E A    +K++
Sbjct: 628 QLIEDMPMEPNDVI-WNSLLAACRVQGNVEMAAYAAEKIQ 666



 Score = 48.5 bits (114), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 57/122 (46%), Gaps = 7/122 (5%)

Query: 177 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLED---ACKLFLEI 233
           S L  C  +  L   K  H+ + K  L  D + +T L++  C+ G  E    A ++F   
Sbjct: 37  SSLKNCKTIDEL---KMFHRSLTKQGLDNDVSTITKLVARSCELGTRESLSFAKEVFENS 93

Query: 234 QRKDVV-TWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 292
           +       +N++I GYA  G   +A+ LF +M + G+ PD  TF   L AC  +     G
Sbjct: 94  ESYGTCFMYNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNG 153

Query: 293 IQ 294
           IQ
Sbjct: 154 IQ 155


>gi|242047142|ref|XP_002461317.1| hypothetical protein SORBIDRAFT_02g000820 [Sorghum bicolor]
 gi|241924694|gb|EER97838.1| hypothetical protein SORBIDRAFT_02g000820 [Sorghum bicolor]
          Length = 640

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 198/464 (42%), Positives = 277/464 (59%), Gaps = 16/464 (3%)

Query: 92  LFLAM-PEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVEN 150
           LF  M P+ + VS +AM++ Y + G LD A  LF   P K ++ W AM+ GY + G    
Sbjct: 183 LFDGMQPDPHVVSVTAMLTCYAKMGLLDDARSLFDGLPSKDLICWNAMMDGYTQHGR--- 239

Query: 151 SWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCK---DT 207
               + L+L R M+  G+ P+  S+   L   + L + + G+ +H  V  S   +   + 
Sbjct: 240 --PSEALRLFRRMLRSGVEPDEVSVVLALSAVAQLGTAESGRWLHSFVTNSSSRRVRLNA 297

Query: 208 TALTPLISMYCKCGDLEDACKLF--LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMK 265
              T LI MY KCG LEDA  +F  L    +D+V WNAM++GYA HG   +AL  F +++
Sbjct: 298 RVGTALIDMYYKCGSLEDAVAVFGDLGAGDRDIVAWNAMVNGYAMHGHSREALAAFGQLR 357

Query: 266 DEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKL 325
            +G+ P  ITF+ +L AC+H+GLVD G + F SM  +YGI  K +HY CMVDLLGRAG++
Sbjct: 358 AQGLWPTDITFIGVLNACSHSGLVDEGRELFRSMAEEYGIEPKVEHYGCMVDLLGRAGRV 417

Query: 326 VEAVDLIKKMP-FKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLAN 384
            EA +L++ M   KP   ++ +LL+ACR+HK ++L +  A +L     AN +G YV L+N
Sbjct: 418 EEAFELVQSMTRTKPDAVMWASLLAACRLHKNMELGQRIADHLVANGLAN-SGTYVLLSN 476

Query: 385 IYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKE 444
           +YAA   W +V R+R  M+ + + K PG S +EVG  V EF +GDR HP    I+ KL+E
Sbjct: 477 MYAAAGNWREVGRVRAMMRASGIQKEPGCSAVEVGRRVVEFVAGDRSHPRAAEIYAKLEE 536

Query: 445 LEKRMKLAGYVPDLE---FALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKN 501
           +    +  G+VP  E     L       KEQ L  HSEKLA+AFGLI  P GT I++ KN
Sbjct: 537 VNGMARARGHVPRTELVLHDLDDDDTAAKEQALAVHSEKLALAFGLISTPPGTAIKIVKN 596

Query: 502 LRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           LR C DCH   K +S +  R+I+ RD  RFHHF DG+C+CGDYW
Sbjct: 597 LRACADCHAVLKLVSEVTGRKIVFRDRNRFHHFVDGSCTCGDYW 640



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 78/301 (25%), Positives = 124/301 (41%), Gaps = 44/301 (14%)

Query: 111 YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRP 170
           Y   G+LD AV L +  P  + V +T+ I  +   G    + A     L  M++  G+ P
Sbjct: 72  YAASGRLDLAVALLRRTPDPTAVFYTSAIHAHSSRGLHHAALA----LLSEMLLSHGLLP 127

Query: 171 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMY------------- 217
            A +LS+ L  C     L +G+ +H    K  L  +    T L+ MY             
Sbjct: 128 TAHTLSASLPACG---GLAVGRALHGYAVKLALSGEPYVATALLGMYARAGDAAAARVLF 184

Query: 218 -------------------CKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKAL 258
                               K G L+DA  LF  +  KD++ WNAM+ GY QHG+  +AL
Sbjct: 185 DGMQPDPHVVSVTAMLTCYAKMGLLDDARSLFDGLPSKDLICWNAMMDGYTQHGRPSEAL 244

Query: 259 RLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG--IQYFDSMVNDYGIAAKPDHYTCMV 316
           RLF +M   G++PD ++ V  L A    G  + G  +  F +  +   +       T ++
Sbjct: 245 RLFRRMLRSGVEPDEVSVVLALSAVAQLGTAESGRWLHSFVTNSSSRRVRLNARVGTALI 304

Query: 317 DLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLL---SACRVHKRLDLAEFAAMNLFNLNPA 373
           D+  + G L +AV +   +    +  +    +    A   H R  LA F  +    L P 
Sbjct: 305 DMYYKCGSLEDAVAVFGDLGAGDRDIVAWNAMVNGYAMHGHSREALAAFGQLRAQGLWPT 364

Query: 374 N 374
           +
Sbjct: 365 D 365



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 82/307 (26%), Positives = 126/307 (41%), Gaps = 71/307 (23%)

Query: 29  LFDKI-PQPDVVSYNIMLSCILLNS--DDVVAAFDFFQRLPIKDTASWNTMISGFVQKKN 85
           LFD + P P VVS   ML+C       DD   A   F  LP KD   WN M+ G+ Q   
Sbjct: 183 LFDGMQPDPHVVSVTAMLTCYAKMGLLDD---ARSLFDGLPSKDLICWNAMMDGYTQHGR 239

Query: 86  MAKARDLFLAM------PEKNSV----------------SW------------------- 104
            ++A  LF  M      P++ SV                 W                   
Sbjct: 240 PSEALRLFRRMLRSGVEPDEVSVVLALSAVAQLGTAESGRWLHSFVTNSSSRRVRLNARV 299

Query: 105 -SAMISGYIECGQLDKAVELFK--VAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLR 161
            +A+I  Y +CG L+ AV +F    A  + +VAW AM++GY   G+   + A  G     
Sbjct: 300 GTALIDMYYKCGSLEDAVAVFGDLGAGDRDIVAWNAMVNGYAMHGHSREALAAFG----- 354

Query: 162 MMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMY-C-- 218
            +   G+ P   +   VL  CSH   +  G++    +F+S    +   + P +  Y C  
Sbjct: 355 QLRAQGLWPTDITFIGVLNACSHSGLVDEGRE----LFRS--MAEEYGIEPKVEHYGCMV 408

Query: 219 ----KCGDLEDACKLFLEIQRK--DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPD 272
               + G +E+A +L   + R   D V W ++++    H   E   R+ D +   G+  +
Sbjct: 409 DLLGRAGRVEEAFELVQSMTRTKPDAVMWASLLAACRLHKNMELGQRIADHLVANGLA-N 467

Query: 273 SITFVAL 279
           S T+V L
Sbjct: 468 SGTYVLL 474


>gi|225452893|ref|XP_002278719.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15340,
           mitochondrial-like [Vitis vinifera]
          Length = 632

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 210/560 (37%), Positives = 314/560 (56%), Gaps = 26/560 (4%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLN----SDDVVAA- 58
           K TV+W +++  F +      +A  +F ++ +  V    + L C+        D VV A 
Sbjct: 81  KDTVDWTTLMGCFVRHNVS-DEALLIFVEMRRCGVKPDEVTLVCLFGGCARLGDVVVGAQ 139

Query: 59  -FDFFQRLPIKDTA-SWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQ 116
                 ++ +     + N ++  + +   M +AR +F  M  ++ VSW+ ++ G I    
Sbjct: 140 GHGCMVKMGLGGVEKACNAVMDMYAKSGLMGEARRVFYEMKGQSVVSWTVILDGVIRSEG 199

Query: 117 LDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI-GLGIRPNASSL 175
           +     +F   P ++ VAWT MI+GY+  G  + S+A     L+R MI  L +  N  +L
Sbjct: 200 VRNGRVVFDEMPERNEVAWTIMIAGYLDSGLTQESFA-----LVREMIFDLEMELNYVTL 254

Query: 176 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCK-DTTALTPLISMYCKCGDLEDACKLFLEIQ 234
            S+L  CS    L +G+ VH    K+   + +    T ++ MY KCG +  A K F ++ 
Sbjct: 255 CSILTACSQSGDLMMGRWVHAYALKTKEKELNIMVGTAMVDMYAKCGRIHIAFKFFKKMP 314

Query: 235 RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ 294
           +++VV+WNAM+SG A HG G  AL +F +M  E  KPD +TF ++L AC+H+GLVD G  
Sbjct: 315 QRNVVSWNAMLSGLAMHGLGRAALDIFPQMFKEA-KPDDVTFTSVLSACSHSGLVDQGCF 373

Query: 295 YFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVH 354
           YF ++ + YGI  K +HY CMVDLLGRAG+L EA  L+++MP +P   + G+LL +C +H
Sbjct: 374 YFGNLESVYGITPKVEHYACMVDLLGRAGRLEEAEILVREMPIRPNEVVLGSLLGSCSIH 433

Query: 355 KRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYS 414
            +L L E     L  L+P N    ++ L+N+YA   K +    +R  +K+  + K+PG S
Sbjct: 434 GKLQLGEHLLQELVQLDPQNTE-YHILLSNMYALAGKQNRANSLRQVLKKRGIKKVPGMS 492

Query: 415 WIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHA---------V 465
            I VG  VH+F +GD+ HP    ++  L E+  R++LAGY P+      A         V
Sbjct: 493 SIHVGGQVHQFSAGDKSHPRTREVYNMLDEMIPRLRLAGYAPNTALQTFAGCDSLEDDLV 552

Query: 466 GEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIV 525
            +E KEQ L  HSEKLAI FGLI    G P+ +FKNLR+C DCH A K +S I  REI++
Sbjct: 553 EQEEKEQALFSHSEKLAICFGLISTGPGVPLHIFKNLRICQDCHSAIKIVSKIYNREIVI 612

Query: 526 RDTTRFHHFKDGTCSCGDYW 545
           RD  RFH FK+G+CSC DYW
Sbjct: 613 RDRNRFHCFKEGSCSCCDYW 632



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 64/271 (23%), Positives = 118/271 (43%), Gaps = 49/271 (18%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPV--KSVVAWTAMISGYMKFGYVENSWAEDGLKLLRM 162
           +A++  Y  CG   +A ++F   P   K  V WT ++  +     V ++ +++ L +   
Sbjct: 54  NALLQFYASCGCAWQARKVFDEIPHSHKDTVDWTTLMGCF-----VRHNVSDEALLIFVE 108

Query: 163 MIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGD 222
           M   G++P+  +L  +  GC+ L  + +G Q H  + K  L     A   ++ MY K G 
Sbjct: 109 MRRCGVKPDEVTLVCLFGGCARLGDVVVGAQGHGCMVKMGLGGVEKACNAVMDMYAKSGL 168

Query: 223 LEDACKLFLEIQRKDVVTWNA-------------------------------MISGYAQH 251
           + +A ++F E++ + VV+W                                 MI+GY   
Sbjct: 169 MGEARRVFYEMKGQSVVSWTVILDGVIRSEGVRNGRVVFDEMPERNEVAWTIMIAGYLDS 228

Query: 252 GKGEKALRLFDKMK-DEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPD 310
           G  +++  L  +M  D  M+ + +T  ++L AC+ +G + +G       V+ Y +  K  
Sbjct: 229 GLTQESFALVREMIFDLEMELNYVTLCSILTACSQSGDLMMG-----RWVHAYALKTKEK 283

Query: 311 HY-----TCMVDLLGRAGKLVEAVDLIKKMP 336
                  T MVD+  + G++  A    KKMP
Sbjct: 284 ELNIMVGTAMVDMYAKCGRIHIAFKFFKKMP 314


>gi|147801010|emb|CAN60118.1| hypothetical protein VITISV_016374 [Vitis vinifera]
          Length = 1166

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 201/531 (37%), Positives = 301/531 (56%), Gaps = 18/531 (3%)

Query: 21   GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSD--DVVAAFDFFQRLPIKDTASWNTMIS 78
            G + +A+++   +PQPD V++N ++     N +  + V A+   +   I   A++ TM+S
Sbjct: 548  GMMMEAKKVLQTMPQPDRVTWNALIGGHAENEEPNEAVKAYKLIREKGIP--ANYITMVS 605

Query: 79   GF--------VQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVK 130
                      + K  M     + L   E +    +++I+ Y +CG L+ +  +F     K
Sbjct: 606  VLGACSAPDDLLKHGMPIHAHIVLTGFESDDYVKNSLITMYAKCGDLNSSNYIFDGLGNK 665

Query: 131  SVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQL 190
            S + W AM++     G       E+ LK+   M  +G+  +  S S  L   ++L+ L+ 
Sbjct: 666  SPITWNAMVAANAHHG-----CGEEALKIFGEMRNVGVNLDQFSFSGGLAATANLAVLEE 720

Query: 191  GKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQ 250
            G+Q+H LV K     D       + MY KCG++ D  K+  +   +  ++WN +IS +A+
Sbjct: 721  GQQLHGLVIKLGFESDLHVTNAAMDMYGKCGEMHDVLKMLPQPINRSRLSWNILISAFAR 780

Query: 251  HGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPD 310
            HG  +KA   F +M   G KPD +TFV+LL ACNH GLVD G+ Y+DSM  ++G+    +
Sbjct: 781  HGCFQKARETFHEMLKLGPKPDHVTFVSLLSACNHGGLVDEGLAYYDSMTREFGVFPGIE 840

Query: 311  HYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNL 370
            H  C++DLLGR+G+L  A   IK+MP  P    + +LL+ACR+H  L+LA   A +L  L
Sbjct: 841  HCVCIIDLLGRSGRLSHAEGFIKEMPVPPNDLAWRSLLAACRIHGNLELARKTAEHLLEL 900

Query: 371  NPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDR 430
            +P++ +  YV  +N+ A   KW+DV  +R  M  NN+ K P  SW+++   VH F  G++
Sbjct: 901  DPSDDSA-YVLYSNVCATSGKWEDVENLRKEMGSNNIKKQPACSWVKLKDKVHSFGMGEK 959

Query: 431  VHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKV 490
             HP+   I  KL EL K  K AGYVPD  FALH + EE KE  L  HSE+LA+AFGLI  
Sbjct: 960  YHPQASRISAKLGELMKMTKEAGYVPDTSFALHDMDEEQKEYNLWNHSERLALAFGLINT 1019

Query: 491  PLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSC 541
            P  + +R+FKNLRVCGDCH   K++S I  R+I++RD  RFHHF  G CSC
Sbjct: 1020 PESSTLRIFKNLRVCGDCHSVYKFVSGIVGRKIVLRDPYRFHHFSGGKCSC 1070



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/266 (25%), Positives = 116/266 (43%), Gaps = 44/266 (16%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVV 133
           NT+I+ + +  N+  AR +F  M  +N  SWS M+SGY+  G  ++AV LF         
Sbjct: 133 NTLINMYSKFGNIEHARYVFDEMRHRNEASWSTMLSGYVRVGLYEEAVGLFC-------- 184

Query: 134 AWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSL-QLGK 192
                                        M GLG+ PN   ++S++  CS    +   G 
Sbjct: 185 ----------------------------QMWGLGVEPNGFMVASLITACSRSGYMADEGF 216

Query: 193 QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHG 252
           QVH  V K+ +  D    T L+  Y   G + +A KLF E+   +VV+W +++ GY+  G
Sbjct: 217 QVHGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSG 276

Query: 253 KGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVD---LGIQYFDSMVNDYGIAAKP 309
              + L ++ +M+ EG+  +  TF  +  +C   GL++   LG Q    ++  YG     
Sbjct: 277 NPGEVLNVYQRMRQEGVSGNQNTFATVTSSC---GLLEDQVLGYQVLGHII-QYGFEDSV 332

Query: 310 DHYTCMVDLLGRAGKLVEAVDLIKKM 335
                ++ +      + EA  +   M
Sbjct: 333 SVANSLISMFSSFSSVEEACYVFDHM 358



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 107/449 (23%), Positives = 208/449 (46%), Gaps = 45/449 (10%)

Query: 11  SVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPI--- 67
           + L  F    G + +AQ+LF+++P  +VVS+  ++     +S +     + +QR+     
Sbjct: 235 TALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLM-VGYSDSGNPGEVLNVYQRMRQEGV 293

Query: 68  ---KDTASWNTMISGFVQKKNMA-KARDLFLAMPEKNSVS-WSAMISGYIECGQLDKAVE 122
              ++T +  T   G ++ + +  +     +    ++SVS  +++IS +     +++A  
Sbjct: 294 SGNQNTFATVTSSCGLLEDQVLGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSVEEACY 353

Query: 123 LFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGC 182
           +F       +++W AMIS Y   G    S     L+    M  L    N+++LSS+L  C
Sbjct: 354 VFDHMNECDIISWNAMISAYAHHGLCRES-----LRCFHWMRHLHNETNSTTLSSLLSVC 408

Query: 183 SHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWN 242
           S + +L+ G+ +H LV K  L  +      L+++Y + G  EDA  +F  +  +D+++WN
Sbjct: 409 SSVDNLKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQAMTERDLISWN 468

Query: 243 AMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC-NHAGLVDLGIQYFDSMV- 300
           +M++ Y Q GK    L++  ++   G   + +TF + L AC N   L++  I +   +V 
Sbjct: 469 SMMACYVQDGKCLDGLKILAELLQMGKVMNHVTFASALAACSNPECLIESKIVHALIIVA 528

Query: 301 --NDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLD 358
             +D+ I         +V + G+ G ++EA  +++ MP +P    +  L+     ++  +
Sbjct: 529 GFHDFLIVGNA-----LVTMYGKLGMMMEAKKVLQTMP-QPDRVTWNALIGGHAENEEPN 582

Query: 359 LAEFAAMNLFNLN--PANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWI 416
            A   A  L      PAN    Y+ + ++  A    DD+ +            MP    I
Sbjct: 583 EA-VKAYKLIREKGIPAN----YITMVSVLGACSAPDDLLK----------HGMP----I 623

Query: 417 EVGTVVHEFRSGDRVHPELVSIHEKLKEL 445
               V+  F S D V   L++++ K  +L
Sbjct: 624 HAHIVLTGFESDDYVKNSLITMYAKCGDL 652



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 80/159 (50%), Gaps = 2/159 (1%)

Query: 179 LLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDV 238
           L G S ++S   GK +H       +         LI+MY K G++E A  +F E++ ++ 
Sbjct: 101 LKGFSEITSQMAGKALHAFCIVGSVNLGIFQTNTLINMYSKFGNIEHARYVFDEMRHRNE 160

Query: 239 VTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG-LVDLGIQYFD 297
            +W+ M+SGY + G  E+A+ LF +M   G++P+     +L+ AC+ +G + D G Q   
Sbjct: 161 ASWSTMLSGYVRVGLYEEAVGLFCQMWGLGVEPNGFMVASLITACSRSGYMADEGFQVHG 220

Query: 298 SMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 336
            +V   GI       T +V   G  G +  A  L ++MP
Sbjct: 221 FVVKT-GILGDVYVGTALVHFYGSIGLVYNAQKLFEEMP 258


>gi|357131283|ref|XP_003567268.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Brachypodium distachyon]
          Length = 654

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 209/540 (38%), Positives = 319/540 (59%), Gaps = 22/540 (4%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILL--NSDDVVAAFDFFQRLPIK-DTASWNTMI 77
           G L  A+++FD+ P  ++  +N +L  + L  + D+ +A      RL +  D+ S+   +
Sbjct: 122 GALPAARQVFDETPVKNIFVWNALLKALALADHGDEALARLADMGRLGVPVDSYSYTHGL 181

Query: 78  SGFV-----QKKNMAKARDLFLAMPEKNSVSWSAMISGYIEC----GQLDKAVELFKVAP 128
              +          A+ R++      +     + + +  I+C    G +  A  +F   P
Sbjct: 182 KACIAVSASHAPASARVREVHAHAIRRGYALHTHVATTLIDCYAKLGIVRYAESVFAAMP 241

Query: 129 VKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIG--LGIRPNASSLSSVLLGCSHLS 186
            ++VV+W+AMI  Y K     N    D ++L + M+     + PN+ ++ SVL  C+ ++
Sbjct: 242 ERNVVSWSAMIGCYAK-----NERPADAIELFKDMMASDADLVPNSITIVSVLNACAGVN 296

Query: 187 SLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI-QRKDVVTWNAMI 245
           +L  GK +H  + +       + L  L++MY +CG LE    +F  I  R+DVV+WN++I
Sbjct: 297 ALSHGKLLHAYILRRGFDSLVSVLNALMAMYMRCGCLEVGRHIFKWIGHRRDVVSWNSLI 356

Query: 246 SGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGI 305
           SGY  HG G +A+++F++M   G  P  ITF+++L AC+HAGLV+ G   F+SMV +YG+
Sbjct: 357 SGYGMHGFGPEAVQVFEEMIHVGFSPSIITFISVLGACSHAGLVNEGKMLFESMV-EYGV 415

Query: 306 AAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAM 365
             + +HY CMVDLLGRAG+L EA++LI+ M  +P P ++G LL ACR+H  ++ AE A  
Sbjct: 416 TPRAEHYACMVDLLGRAGQLDEAMELIRSMHIEPSPQVWGALLGACRIHGHVEYAEIACS 475

Query: 366 NLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEF 425
           +LF+L P NA G YV LA+IYA  K  + V  ++  ++E+ + K+ G SWIEV   +H F
Sbjct: 476 HLFDLEPRNA-GNYVLLADIYARAKLHNQVGVLKELLEEHALEKVTGCSWIEVKKKLHSF 534

Query: 426 RSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAF 485
            S D  +P +  +   + E   +MK  GYVPD    L+ +  E KE++L+ HSEKLA+AF
Sbjct: 535 TSVDNKNPPVEQLQALIGEFVAQMKNQGYVPDTGIVLYDIEGEEKERILIGHSEKLAVAF 594

Query: 486 GLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           GLI    G  IR+ KNLR+C DCH  TK+IS   +REI+VRD  RFHHF+DG CSCGDYW
Sbjct: 595 GLINTCSGEVIRITKNLRLCEDCHSVTKFISKFTEREIVVRDVNRFHHFRDGVCSCGDYW 654



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 60/210 (28%), Positives = 98/210 (46%), Gaps = 20/210 (9%)

Query: 107 MISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGL 166
           +I  Y   G L  A ++F   PVK++  W A++       +      ++ L  L  M  L
Sbjct: 114 LIEAYAALGALPAARQVFDETPVKNIFVWNALLKALALADH-----GDEALARLADMGRL 168

Query: 167 GIRPNASSLSSVLLGC-----SHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCG 221
           G+  ++ S +  L  C     SH  +    ++VH    +      T   T LI  Y K G
Sbjct: 169 GVPVDSYSYTHGLKACIAVSASHAPASARVREVHAHAIRRGYALHTHVATTLIDCYAKLG 228

Query: 222 DLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKM--KDEGMKPDSITFVAL 279
            +  A  +F  +  ++VV+W+AMI  YA++ +   A+ LF  M   D  + P+SIT V++
Sbjct: 229 IVRYAESVFAAMPERNVVSWSAMIGCYAKNERPADAIELFKDMMASDADLVPNSITIVSV 288

Query: 280 LLAC------NHAGLVDLGI--QYFDSMVN 301
           L AC      +H  L+   I  + FDS+V+
Sbjct: 289 LNACAGVNALSHGKLLHAYILRRGFDSLVS 318


>gi|356568841|ref|XP_003552616.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 658

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 192/450 (42%), Positives = 279/450 (62%), Gaps = 8/450 (1%)

Query: 98  EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGL 157
           E N    + ++  Y + G +  A  +F   P K+ V+W+AMI+ + K     N      L
Sbjct: 215 EANIHVMTTLLDVYAKFGSVSYANSVFCAMPTKNFVSWSAMIACFAK-----NEMPMKAL 269

Query: 158 KLLRMMI--GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLIS 215
           +L ++M+       PN+ ++ +VL  C+ L++L+ GK +H  + +  L      L  LI+
Sbjct: 270 ELFQLMMLEAHDSVPNSVTMVNVLQACAGLAALEQGKLIHGYILRRGLDSILPVLNALIT 329

Query: 216 MYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSIT 275
           MY +CG++    ++F  ++ +DVV+WN++IS Y  HG G+KA+++F+ M  +G  P  I+
Sbjct: 330 MYGRCGEILMGQRVFDNMKNRDVVSWNSLISIYGMHGFGKKAIQIFENMIHQGSSPSYIS 389

Query: 276 FVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335
           F+ +L AC+HAGLV+ G   F+SM++ Y I    +HY CMVDLLGRA +L EA+ LI+ M
Sbjct: 390 FITVLGACSHAGLVEEGKILFESMLSKYRIHPGMEHYACMVDLLGRANRLDEAIKLIEDM 449

Query: 336 PFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDV 395
            F+P P ++G+LL +CR+H  ++LAE A+  LF L P N AG YV LA+IYA  K W + 
Sbjct: 450 HFEPGPTVWGSLLGSCRIHCNVELAERASTLLFELEPRN-AGNYVLLADIYAEAKMWSEA 508

Query: 396 ARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYV 455
             +   ++   + K+PG SWIEV   V+ F S D  +P++  IH  L +L   MK  GYV
Sbjct: 509 KSVMKLLEARGLQKLPGCSWIEVKRKVYSFVSVDEHNPQIEEIHALLVKLSNEMKAQGYV 568

Query: 456 PDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYI 515
           P     L+ + EE KE+++L HSEKLA+AFGLI    G  IR+ KNLR+C DCH  TK+I
Sbjct: 569 PQTNVVLYDLDEEEKERIVLGHSEKLAVAFGLINTVKGETIRIRKNLRLCEDCHAVTKFI 628

Query: 516 SAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           S    REI+VRD  RFHHFKDG CSCGDYW
Sbjct: 629 SKFANREILVRDVNRFHHFKDGVCSCGDYW 658



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 81/291 (27%), Positives = 130/291 (44%), Gaps = 44/291 (15%)

Query: 8   NWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSY-NIMLSCILLNSDDVVAAFDFFQRLP 66
           N N ++    K  G LK A  L    P P   ++ +++ SC   NS  +    D  +RL 
Sbjct: 49  NNNQLIQSLCKG-GNLKQAIHLLCCEPNPTQRTFEHLICSCAQQNS--LSDGLDVHRRL- 104

Query: 67  IKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKV 126
                    + SGF Q        D FLA         + +I+ Y E G +D+A ++F  
Sbjct: 105 ---------VSSGFDQ--------DPFLA---------TKLINMYYELGSIDRARKVFDE 138

Query: 127 APVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCS--- 183
              +++  W A+       G       ++ L L   M  +GI  +  + + VL  C    
Sbjct: 139 TRERTIYVWNALFRALAMVG-----CGKELLDLYVQMNWIGIPSDRFTYTFVLKACVVSE 193

Query: 184 -HLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWN 242
             +S LQ GK++H  + +     +   +T L+ +Y K G +  A  +F  +  K+ V+W+
Sbjct: 194 LSVSPLQKGKEIHAHILRHGYEANIHVMTTLLDVYAKFGSVSYANSVFCAMPTKNFVSWS 253

Query: 243 AMISGYAQHGKGEKALRLFDKMKDEGMK--PDSITFVALLLACNHAGLVDL 291
           AMI+ +A++    KAL LF  M  E     P+S+T V +L AC  AGL  L
Sbjct: 254 AMIACFAKNEMPMKALELFQLMMLEAHDSVPNSVTMVNVLQAC--AGLAAL 302



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 52/222 (23%), Positives = 96/222 (43%), Gaps = 5/222 (2%)

Query: 170 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 229
           P   +   ++  C+  +SL  G  VH+ +  S   +D    T LI+MY + G ++ A K+
Sbjct: 76  PTQRTFEHLICSCAQQNSLSDGLDVHRRLVSSGFDQDPFLATKLINMYYELGSIDRARKV 135

Query: 230 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLV 289
           F E + + +  WNA+    A  G G++ L L+ +M   G+  D  T+  +L AC  + L 
Sbjct: 136 FDETRERTIYVWNALFRALAMVGCGKELLDLYVQMNWIGIPSDRFTYTFVLKACVVSELS 195

Query: 290 DLGIQ---YFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGT 346
              +Q      + +  +G  A     T ++D+  + G +  A  +   MP K    +  +
Sbjct: 196 VSPLQKGKEIHAHILRHGYEANIHVMTTLLDVYAKFGSVSYANSVFCAMPTK--NFVSWS 253

Query: 347 LLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAA 388
            + AC     + +       L  L   ++    V + N+  A
Sbjct: 254 AMIACFAKNEMPMKALELFQLMMLEAHDSVPNSVTMVNVLQA 295



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 66/273 (24%), Positives = 115/273 (42%), Gaps = 54/273 (19%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELF--------DKIPQPDVVSYNIMLSCILLNS 52
           M  K  V+W++++A FAK    +K A ELF        D +P   V   N++ +C  L  
Sbjct: 244 MPTKNFVSWSAMIACFAKNEMPMK-ALELFQLMMLEAHDSVPN-SVTMVNVLQACAGL-- 299

Query: 53  DDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYI 112
               AA +               +I G++ +      R L   +P  N     A+I+ Y 
Sbjct: 300 ----AALE------------QGKLIHGYILR------RGLDSILPVLN-----ALITMYG 332

Query: 113 ECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNA 172
            CG++     +F     + VV+W ++IS Y   G+      +  +++   MI  G  P+ 
Sbjct: 333 RCGEILMGQRVFDNMKNRDVVSWNSLISIYGMHGF-----GKKAIQIFENMIHQGSSPSY 387

Query: 173 SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCK-----DTTALTPLISMYCKCGDLEDAC 227
            S  +VL  CSH   ++ GK    ++F+S L K            ++ +  +   L++A 
Sbjct: 388 ISFITVLGACSHAGLVEEGK----ILFESMLSKYRIHPGMEHYACMVDLLGRANRLDEAI 443

Query: 228 KLFLEIQRKDVVT-WNAMISGYAQHGKGEKALR 259
           KL  ++  +   T W +++     H   E A R
Sbjct: 444 KLIEDMHFEPGPTVWGSLLGSCRIHCNVELAER 476


>gi|15237212|ref|NP_200075.1| mitochondrial RNA editing factor 1 [Arabidopsis thaliana]
 gi|75180446|sp|Q9LTF4.1|PP429_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g52630
 gi|8953718|dbj|BAA98081.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332008860|gb|AED96243.1| mitochondrial RNA editing factor 1 [Arabidopsis thaliana]
          Length = 588

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 192/441 (43%), Positives = 276/441 (62%), Gaps = 7/441 (1%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI 164
           S+++  Y +CG++  A ++F   P ++VV W+ M+ GY + G  EN   E+ L L +  +
Sbjct: 155 SSLVDMYAKCGEIVYARKMFDEMPQRNVVTWSGMMYGYAQMG--EN---EEALWLFKEAL 209

Query: 165 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 224
              +  N  S SSV+  C++ + L+LG+Q+H L  KS     +   + L+S+Y KCG  E
Sbjct: 210 FENLAVNDYSFSSVISVCANSTLLELGRQIHGLSIKSSFDSSSFVGSSLVSLYSKCGVPE 269

Query: 225 DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 284
            A ++F E+  K++  WNAM+  YAQH   +K + LF +MK  GMKP+ ITF+ +L AC+
Sbjct: 270 GAYQVFNEVPVKNLGIWNAMLKAYAQHSHTQKVIELFKRMKLSGMKPNFITFLNVLNACS 329

Query: 285 HAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIF 344
           HAGLVD G  YFD M  +  I     HY  +VD+LGRAG+L EA+++I  MP  P  +++
Sbjct: 330 HAGLVDEGRYYFDQM-KESRIEPTDKHYASLVDMLGRAGRLQEALEVITNMPIDPTESVW 388

Query: 345 GTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKE 404
           G LL++C VHK  +LA FAA  +F L P  ++G ++ L+N YAA  +++D A+ R  +++
Sbjct: 389 GALLTSCTVHKNTELAAFAADKVFELGPV-SSGMHISLSNAYAADGRFEDAAKARKLLRD 447

Query: 405 NNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHA 464
               K  G SW+E    VH F +G+R H +   I+EKL EL + M+ AGY+ D  + L  
Sbjct: 448 RGEKKETGLSWVEERNKVHTFAAGERRHEKSKEIYEKLAELGEEMEKAGYIADTSYVLRE 507

Query: 465 VGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREII 524
           V  + K Q + +HSE+LAIAFGLI  P   PIRV KNLRVCGDCH A K++S   +R II
Sbjct: 508 VDGDEKNQTIRYHSERLAIAFGLITFPADRPIRVMKNLRVCGDCHNAIKFMSVCTRRVII 567

Query: 525 VRDTTRFHHFKDGTCSCGDYW 545
           VRD  RFH F+DG CSC DYW
Sbjct: 568 VRDNNRFHRFEDGKCSCNDYW 588



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 49/148 (33%), Positives = 84/148 (56%)

Query: 147 YVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKD 206
           + +N      L+ L+ M+   +RP+   L S    C+ LS   +G+ VH L  K+    D
Sbjct: 91  FAQNELPWMSLEFLKKMMAGNLRPDDHVLPSATKSCAILSRCDIGRSVHCLSMKTGYDAD 150

Query: 207 TTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKD 266
               + L+ MY KCG++  A K+F E+ +++VVTW+ M+ GYAQ G+ E+AL LF +   
Sbjct: 151 VFVGSSLVDMYAKCGEIVYARKMFDEMPQRNVVTWSGMMYGYAQMGENEEALWLFKEALF 210

Query: 267 EGMKPDSITFVALLLACNHAGLVDLGIQ 294
           E +  +  +F +++  C ++ L++LG Q
Sbjct: 211 ENLAVNDYSFSSVISVCANSTLLELGRQ 238


>gi|15239745|ref|NP_199702.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170778|sp|Q9FI80.1|PP425_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g48910
 gi|10177180|dbj|BAB10314.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|15810559|gb|AAL07167.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|332008359|gb|AED95742.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 646

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 193/444 (43%), Positives = 272/444 (61%), Gaps = 6/444 (1%)

Query: 102 VSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLR 161
           V W+ MI GY+  G    A  LF     +SVV+W  MISGY   G+ +     D +++ R
Sbjct: 209 VLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFK-----DAVEVFR 263

Query: 162 MMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCG 221
            M    IRPN  +L SVL   S L SL+LG+ +H     S +  D    + LI MY KCG
Sbjct: 264 EMKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCG 323

Query: 222 DLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLL 281
            +E A  +F  + R++V+TW+AMI+G+A HG+   A+  F KM+  G++P  + ++ LL 
Sbjct: 324 IIEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLT 383

Query: 282 ACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQP 341
           AC+H GLV+ G +YF  MV+  G+  + +HY CMVDLLGR+G L EA + I  MP KP  
Sbjct: 384 ACSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKPDD 443

Query: 342 AIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLS 401
            I+  LL ACR+   +++ +  A  L ++ P ++ G YV L+N+YA+   W +V+ +RL 
Sbjct: 444 VIWKALLGACRMQGNVEMGKRVANILMDMVPHDS-GAYVALSNMYASQGNWSEVSEMRLR 502

Query: 402 MKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFA 461
           MKE ++ K PG S I++  V+HEF   D  HP+   I+  L E+  +++LAGY P     
Sbjct: 503 MKEKDIRKDPGCSLIDIDGVLHEFVVEDDSHPKAKEINSMLVEISDKLRLAGYRPITTQV 562

Query: 462 LHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKR 521
           L  + EE KE +L +HSEK+A AFGLI    G PIR+ KNLR+C DCH + K IS + KR
Sbjct: 563 LLNLEEEDKENVLHYHSEKIATAFGLISTSPGKPIRIVKNLRICEDCHSSIKLISKVYKR 622

Query: 522 EIIVRDTTRFHHFKDGTCSCGDYW 545
           +I VRD  RFHHF+DG+CSC DYW
Sbjct: 623 KITVRDRKRFHHFQDGSCSCMDYW 646



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 79/349 (22%), Positives = 148/349 (42%), Gaps = 84/349 (24%)

Query: 81  VQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMIS 140
           +  +++  A  +F  MP++N  SW+ +I G+ E  + DKA           ++A T    
Sbjct: 70  LHHRDLDYAHKIFNQMPQRNCFSWNTIIRGFSESDE-DKA-----------LIAITL--- 114

Query: 141 GYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK 200
                                MM    + PN  +  SVL  C+    +Q GKQ+H L  K
Sbjct: 115 ------------------FYEMMSDEFVEPNRFTFPSVLKACAKTGKIQEGKQIHGLALK 156

Query: 201 SPLCKDTTALTPLISMYCKCGDLEDA---------------------------------- 226
                D   ++ L+ MY  CG ++DA                                  
Sbjct: 157 YGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMTDRRKRDGEIVLWNVMID 216

Query: 227 -------CK----LFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSIT 275
                  CK    LF +++++ VV+WN MISGY+ +G  + A+ +F +MK   ++P+ +T
Sbjct: 217 GYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMKKGDIRPNYVT 276

Query: 276 FVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335
            V++L A +  G ++LG ++      D GI       + ++D+  + G + +A+ + +++
Sbjct: 277 LVSVLPAISRLGSLELG-EWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIHVFERL 335

Query: 336 PFKPQPAIFGTLLSACRVHKRLDLAE--FAAMNLFNLNPANAAGCYVQL 382
           P +     +  +++   +H +   A   F  M    + P++ A  Y+ L
Sbjct: 336 P-RENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVA--YINL 381



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 78/283 (27%), Positives = 137/283 (48%), Gaps = 18/283 (6%)

Query: 7   VNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNS--DDVVAAFDFFQR 64
           V WN ++ G+ +  G  K A+ LFDK+ Q  VVS+N M+S   LN    D V  F   ++
Sbjct: 209 VLWNVMIDGYMRL-GDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMKK 267

Query: 65  LPIK-DTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISGYIECGQLDK 119
             I+ +  +  +++    +  ++     L L   +     + V  SA+I  Y +CG ++K
Sbjct: 268 GDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEK 327

Query: 120 AVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVL 179
           A+ +F+  P ++V+ W+AMI+G+   G      A D +     M   G+RP+  +  ++L
Sbjct: 328 AIHVFERLPRENVITWSAMINGFAIHGQ-----AGDAIDCFCKMRQAGVRPSDVAYINLL 382

Query: 180 LGCSHLSSLQLGKQ-VHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK-D 237
             CSH   ++ G++   Q+V    L         ++ +  + G L++A +  L +  K D
Sbjct: 383 TACSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKPD 442

Query: 238 VVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKP-DSITFVAL 279
            V W A++      G  E   R+ + + D  M P DS  +VAL
Sbjct: 443 DVIWKALLGACRMQGNVEMGKRVANILMD--MVPHDSGAYVAL 483



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 58/110 (52%), Gaps = 9/110 (8%)

Query: 193 QVHQLVFKSPLCKDTTALTPLISMYCKCGDLED-----ACKLFLEIQRKDVVTWNAMISG 247
           Q+H +  KS   +DT A   ++  +C   DL       A K+F ++ +++  +WN +I G
Sbjct: 41  QIHAVFIKSGQMRDTLAAAEILR-FCATSDLHHRDLDYAHKIFNQMPQRNCFSWNTIIRG 99

Query: 248 YAQ--HGKGEKALRLF-DKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ 294
           +++    K   A+ LF + M DE ++P+  TF ++L AC   G +  G Q
Sbjct: 100 FSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKACAKTGKIQEGKQ 149


>gi|357477865|ref|XP_003609218.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355510273|gb|AES91415.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1134

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 213/551 (38%), Positives = 332/551 (60%), Gaps = 27/551 (4%)

Query: 10   NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
            N++L  +A +   + + Q++F ++P+ D VS+N  +  +      V+ A  +F  +    
Sbjct: 596  NALLTLYA-ETDSINECQKVFFQMPEYDQVSWNSFIGALAKYEASVLQALKYFLEMM--- 651

Query: 70   TASWN----------TMISGF--VQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQL 117
             A W             +S F  +   +   A  L  ++ + N++  +A+++ Y +C Q+
Sbjct: 652  QAGWRPNRVTFINILAAVSSFSVLGLGHQIHALILKYSVADDNAIE-NALLAFYGKCEQM 710

Query: 118  DKAVELF-KVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLS 176
            +    +F +++  +  V+W +MISGY+  G +  +     + L+  M+  G + +  + +
Sbjct: 711  EDCEIIFSRMSERRDEVSWNSMISGYLHSGILHKA-----MDLVWPMMQRGQKLDGFTFA 765

Query: 177  SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK 236
            +VL  C+ +++L+ G +VH    ++ L  D    + L+ MY KCG ++ A + F  +  +
Sbjct: 766  TVLSACASVATLERGMEVHACAVRACLESDVVVGSALVDMYAKCGKIDYASRFFELMPVR 825

Query: 237  DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYF 296
            ++ +WN+MISGYA+HG G+KAL++F +MK  G  PD +TFV +L AC+H GLVD G ++F
Sbjct: 826  NIYSWNSMISGYARHGHGQKALKIFTRMKQHGQSPDHVTFVGVLSACSHVGLVDEGYKHF 885

Query: 297  DSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSA-CRVHK 355
             SM   YG++ + +H++CMVDLLGRAG + +  D IK MP  P   I+ T+L A CR + 
Sbjct: 886  KSMGEVYGLSPRIEHFSCMVDLLGRAGDVKKIEDFIKTMPMDPNILIWRTVLGACCRANG 945

Query: 356  R-LDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYS 414
            R  +L + AA  L  L P NA   YV L+N++AA   W+DV   RL+M++  V K  G S
Sbjct: 946  RNTELGQRAAKMLIELEPQNAVN-YVLLSNMHAAGGNWEDVVEARLAMRKAAVKKDAGCS 1004

Query: 415  WIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLL 474
            W+ +   VH F +GD+ HPE   I+EKLKEL  +++ AGYVP+ ++AL+ +  E KE+LL
Sbjct: 1005 WVNMKDGVHLFVAGDQTHPEKEKIYEKLKELMNKIRDAGYVPETKYALYDLELENKEELL 1064

Query: 475  LFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHF 534
             +HSEKLAIAF L +     PIR+ KNLRVCGDCH A KYIS I  R+II+RD+ RFHHF
Sbjct: 1065 SYHSEKLAIAFVLTRKS-ELPIRIMKNLRVCGDCHTAFKYISKIVGRQIILRDSNRFHHF 1123

Query: 535  KDGTCSCGDYW 545
              G CSCGDYW
Sbjct: 1124 GGGMCSCGDYW 1134



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 92/337 (27%), Positives = 152/337 (45%), Gaps = 53/337 (15%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVV 133
           NT+I+ +V+  N+  AR LF  MP+KN VSWS +ISGY +    D+A  LFK        
Sbjct: 179 NTLINIYVRIGNLVSARKLFDEMPQKNLVSWSCLISGYTQNRMPDEACSLFK-------- 230

Query: 134 AWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSS--LQLG 191
                                        +I  G+ PN  ++ S L  C    S  ++LG
Sbjct: 231 ----------------------------GVISSGLLPNHFAVGSALRACQQCGSTGIKLG 262

Query: 192 KQVHQLVFKSPLCKDTTALTPLISMYCKC-GDLEDACKLFLEIQRKDVVTWNAMISGYAQ 250
            Q+H  + K P   D      L+SMY  C G ++DA ++F EI+ ++ VTWN++IS Y +
Sbjct: 263 MQIHAFICKLPCVSDMILSNVLMSMYSDCSGSIDDAHRVFDEIKFRNSVTWNSIISVYCR 322

Query: 251 HGKGEKALRLFDKMKDEG----MKPDSITFVALLLACNHAGLVDLGIQYFDSM---VNDY 303
            G    A +LF  M+ EG    ++P+  T  +L+ A     L D G+   + M   +   
Sbjct: 323 RGDAVSAFKLFSVMQMEGVELNLRPNEYTLCSLVTAA--CSLADCGLVLLEQMLTRIEKS 380

Query: 304 GIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAE-F 362
           G        + +V+   R G +  A  + K+M  +    + G ++   R H+  + A+ F
Sbjct: 381 GFLRDLYVGSALVNGFARYGLMDCAKMIFKQMYDRNAVTMNGLMVGLARQHQGEEAAKVF 440

Query: 363 AAM-NLFNLNPANAA---GCYVQLANIYAAMKKWDDV 395
             M +L  +N  +       + + +N+    +K  +V
Sbjct: 441 KEMKDLVEINSESLVVLLSTFTEFSNLKEGKRKGQEV 477



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 83/362 (22%), Positives = 168/362 (46%), Gaps = 34/362 (9%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQ 63
           +  V  N ++ G A+Q  + ++A ++F ++   D+V          +NS+ +V     F 
Sbjct: 415 RNAVTMNGLMVGLARQH-QGEEAAKVFKEMK--DLVE---------INSESLVVLLSTFT 462

Query: 64  RLP-IKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVE 122
               +K+       +  ++ +  +  AR          S+  +A+++ Y +C  +D A  
Sbjct: 463 EFSNLKEGKRKGQEVHAYLFRSGLVDARI---------SIG-NALVNMYGKCTAIDNACS 512

Query: 123 LFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGC 182
           +F++ P K  V+W +MISG        N   E+ +     M   G+ P+  S+ S L  C
Sbjct: 513 VFQLMPSKDTVSWNSMISGL-----DHNERFEEAVSCFHTMKRNGMVPSNFSVISTLSSC 567

Query: 183 SHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWN 242
           S L  L LG+Q+H   FK  L  D +    L+++Y +   + +  K+F ++   D V+WN
Sbjct: 568 SSLGWLTLGRQIHGEGFKWGLDLDVSVSNALLTLYAETDSINECQKVFFQMPEYDQVSWN 627

Query: 243 AMISGYAQHGKGE-KALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN 301
           + I   A++     +AL+ F +M   G +P+ +TF+ +L A +   ++ LG Q   +++ 
Sbjct: 628 SFIGALAKYEASVLQALKYFLEMMQAGWRPNRVTFINILAAVSSFSVLGLGHQ-IHALIL 686

Query: 302 DYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACR----VHKRL 357
            Y +A        ++   G+  ++ +   +  +M  +     + +++S       +HK +
Sbjct: 687 KYSVADDNAIENALLAFYGKCEQMEDCEIIFSRMSERRDEVSWNSMISGYLHSGILHKAM 746

Query: 358 DL 359
           DL
Sbjct: 747 DL 748



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 81/313 (25%), Positives = 149/313 (47%), Gaps = 44/313 (14%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
           N +++ ++   G + DA  +FD+I   + V++N ++S +     D V+AF  F  + ++ 
Sbjct: 282 NVLMSMYSDCSGSIDDAHRVFDEIKFRNSVTWNSIIS-VYCRRGDAVSAFKLFSVMQMEG 340

Query: 70  ----------------TASWNTMISGFVQKKNMAKA-------RDLFLAMPEKNSVSWSA 106
                           TA+ +    G V  + M          RDL++          SA
Sbjct: 341 VELNLRPNEYTLCSLVTAACSLADCGLVLLEQMLTRIEKSGFLRDLYVG---------SA 391

Query: 107 MISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGL 166
           +++G+   G +D A  +FK    ++ V    ++ G  +         E+  K+ + M  L
Sbjct: 392 LVNGFARYGLMDCAKMIFKQMYDRNAVTMNGLMVGLAR-----QHQGEEAAKVFKEMKDL 446

Query: 167 GIRPNASSLSSVLLGCSHLSSLQLGK----QVHQLVFKSPLCKDTTAL-TPLISMYCKCG 221
            +  N+ SL  +L   +  S+L+ GK    +VH  +F+S L     ++   L++MY KC 
Sbjct: 447 -VEINSESLVVLLSTFTEFSNLKEGKRKGQEVHAYLFRSGLVDARISIGNALVNMYGKCT 505

Query: 222 DLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLL 281
            +++AC +F  +  KD V+WN+MISG   + + E+A+  F  MK  GM P + + ++ L 
Sbjct: 506 AIDNACSVFQLMPSKDTVSWNSMISGLDHNERFEEAVSCFHTMKRNGMVPSNFSVISTLS 565

Query: 282 ACNHAGLVDLGIQ 294
           +C+  G + LG Q
Sbjct: 566 SCSSLGWLTLGRQ 578



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 85/347 (24%), Positives = 151/347 (43%), Gaps = 47/347 (13%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDV----- 55
           M  K TV+WNS+++G      + ++A   F  + +  +V  N  +   L +   +     
Sbjct: 517 MPSKDTVSWNSMISGLDHNE-RFEEAVSCFHTMKRNGMVPSNFSVISTLSSCSSLGWLTL 575

Query: 56  ---VAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYI 112
              +    F   L + D +  N +++ + +  ++ + + +F  MPE + VSW++ I    
Sbjct: 576 GRQIHGEGFKWGLDL-DVSVSNALLTLYAETDSINECQKVFFQMPEYDQVSWNSFI---- 630

Query: 113 ECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNA 172
             G L K    ++ + +++                         LK    M+  G RPN 
Sbjct: 631 --GALAK----YEASVLQA-------------------------LKYFLEMMQAGWRPNR 659

Query: 173 SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLE 232
            +  ++L   S  S L LG Q+H L+ K  +  D      L++ Y KC  +ED   +F  
Sbjct: 660 VTFINILAAVSSFSVLGLGHQIHALILKYSVADDNAIENALLAFYGKCEQMEDCEIIFSR 719

Query: 233 I-QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDL 291
           + +R+D V+WN+MISGY   G   KA+ L   M   G K D  TF  +L AC     ++ 
Sbjct: 720 MSERRDEVSWNSMISGYLHSGILHKAMDLVWPMMQRGQKLDGFTFATVLSACASVATLER 779

Query: 292 GIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 338
           G++     V    + +     + +VD+  + GK+  A    + MP +
Sbjct: 780 GMEVHACAVRA-CLESDVVVGSALVDMYAKCGKIDYASRFFELMPVR 825



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 60/111 (54%), Gaps = 2/111 (1%)

Query: 186 SSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMI 245
           SSL     +H  ++K+    D      LI++Y + G+L  A KLF E+ +K++V+W+ +I
Sbjct: 154 SSLYDANHLHLQLYKTGFTDDVFFCNTLINIYVRIGNLVSARKLFDEMPQKNLVSWSCLI 213

Query: 246 SGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGL--VDLGIQ 294
           SGY Q+   ++A  LF  +   G+ P+     + L AC   G   + LG+Q
Sbjct: 214 SGYTQNRMPDEACSLFKGVISSGLLPNHFAVGSALRACQQCGSTGIKLGMQ 264


>gi|147780302|emb|CAN70248.1| hypothetical protein VITISV_032008 [Vitis vinifera]
          Length = 679

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 199/515 (38%), Positives = 310/515 (60%), Gaps = 15/515 (2%)

Query: 18  KQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNS--DDVVAAFDFFQRLPIK-DTASWN 74
           K+   L   +++F+ +P+ D+VS+N ++S    N   +D +          ++ D+ + +
Sbjct: 141 KESYYLGSLRKVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLS 200

Query: 75  TMISGFVQKKNMAKARDLFLAMPEKNSVS-----WSAMISGYIECGQLDKAVELFKVAPV 129
           +++  F +  N+ K +++      +N         S++I  Y +C ++D +  +F + P 
Sbjct: 201 SVLPIFAEYVNLLKGKEIH-GYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQ 259

Query: 130 KSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQ 189
              ++W ++I+G      V+N   ++GLK  + M+   I+PN  S SS++  C+HL++L 
Sbjct: 260 HDGISWNSIIAGC-----VQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLH 314

Query: 190 LGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYA 249
           LGKQ+H  + +S    +    + L+ MY KCG++  A  +F +++  D+V+W AMI GYA
Sbjct: 315 LGKQLHGYIIRSRFDGNVFIASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGYA 374

Query: 250 QHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKP 309
            HG    A+ LF +M+ EG+KP+ + F+A+L AC+HAGLVD   +YF+SM  DY I    
Sbjct: 375 LHGHAYDAISLFKRMEVEGVKPNYVAFMAVLTACSHAGLVDEAWKYFNSMTQDYRIIPGL 434

Query: 310 DHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFN 369
           +HY  + DLLGR G+L EA + I  M  +P  +++ TLL+ACRVHK ++LAE  +  LF 
Sbjct: 435 EHYAAVADLLGRVGRLEEAYEFISDMHIEPTGSVWSTLLAACRVHKNIELAEKVSKKLFT 494

Query: 370 LNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGD 429
           ++P N  G YV L+NIY+A  +W D  ++R++M++  + K P  SWIE+   VH F +GD
Sbjct: 495 VDPQN-IGAYVLLSNIYSAAGRWKDARKLRIAMRDKGMKKKPACSWIEIKNKVHAFVAGD 553

Query: 430 RVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIK 489
           + HP    I+E LK L ++M+  GYV D    LH V EE K  LL  HSE+LAI FG+I 
Sbjct: 554 KSHPYYDRINEALKVLLEQMEREGYVLDTTEVLHDVEEEQKRYLLCSHSERLAITFGIIS 613

Query: 490 VPLGTPIRVFKNLRVCGDCHRATKYISAIEKREII 524
            P GT IRV KNLRVC DCH ATK+IS I  REI+
Sbjct: 614 TPAGTTIRVTKNLRVCVDCHTATKFISKIVGREIV 648


>gi|413943926|gb|AFW76575.1| hypothetical protein ZEAMMB73_444227 [Zea mays]
          Length = 869

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 204/558 (36%), Positives = 306/558 (54%), Gaps = 52/558 (9%)

Query: 9   WNSVLAGFAKQRGKLKDAQELFDKI-PQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPI 67
           WN+++ G+A Q G  ++A ELF ++  +  VV     ++ +L                  
Sbjct: 343 WNAMVCGYA-QAGMDEEALELFARMEAEAGVVPSETTIAGVL-------------PACAR 388

Query: 68  KDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVA 127
            +T +    + G+V K+ MA            N    +A++  Y   G ++ A  +F   
Sbjct: 389 SETFAGKEAVHGYVLKRGMAD-----------NPFVQNALMDLYARLGDMEAARWIFAAI 437

Query: 128 PVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLG------------------IR 169
             + VV+W  +I+G +  G++      D  +L+R M   G                  + 
Sbjct: 438 EPRDVVSWNTLITGCVVQGHIH-----DAFQLVREMQQQGRFTDATTEDGIAGTDEEPVV 492

Query: 170 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 229
           PN  +L ++L GC+ L++   GK++H    +  L  D    + L+ MY KCG L  +  +
Sbjct: 493 PNNVTLMTLLPGCAMLAAPAKGKEIHGYAMRHALDSDIAVGSALVDMYAKCGCLALSRAV 552

Query: 230 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKM-KDEGMKPDSITFVALLLACNHAGL 288
           F  + +++V+TWN +I  Y  HG G++A+ LFD+M      KP+ +TF+A L AC+H+G+
Sbjct: 553 FDRLPKRNVITWNVLIMAYGMHGLGDEAIALFDRMVMSNEAKPNEVTFIAALAACSHSGM 612

Query: 289 VDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKPQPAIFGTL 347
           VD G++ F SM  ++G+   PD + C VD+LGRAG+L EA  +I  M P + Q + + + 
Sbjct: 613 VDRGMELFHSMKRNHGVQPTPDLHACAVDILGRAGRLDEAYSIITSMEPGEQQVSAWSSF 672

Query: 348 LSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNV 407
           L ACR+H+ + L E AA  LF L P + A  YV L NIY+A   W+  + +R  M++  V
Sbjct: 673 LGACRLHRNVPLGEIAAERLFQLEP-DEASHYVLLCNIYSAAGLWEKSSEVRNRMRQRGV 731

Query: 408 VKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGE 467
            K PG SWIE+  V+H F +G+  HPE   +H  +  L +RM+  GY PD    LH + E
Sbjct: 732 SKEPGCSWIELDGVIHRFMAGESAHPESTLVHAHMDALWERMRNQGYTPDTSSVLHDIEE 791

Query: 468 EVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRD 527
             K  +L +HSEKLAIAFGL++ P G  IRV KNLRVC DCH A K+IS +  REI++RD
Sbjct: 792 SEKAAILRYHSEKLAIAFGLLRTPPGATIRVAKNLRVCNDCHEAAKFISRMVGREIVLRD 851

Query: 528 TTRFHHFKDGTCSCGDYW 545
             RFHHF DG CSCGDYW
Sbjct: 852 VRRFHHFVDGACSCGDYW 869



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 113/222 (50%), Gaps = 13/222 (5%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI 164
           +A+++ Y  CG L  A+ LF   P +  V + ++I+    F      W    L  LR M+
Sbjct: 100 NALLTAYARCGDLTAALALFNAMPSRDAVTFNSLIAALCLF----RRWLP-ALDALRDML 154

Query: 165 GLGIRPNASSLSSVLLGCSHLSS-LQLGKQVHQLVFKSPLCK--DTTALTPLISMYCKCG 221
             G   ++ +L SVLL CSHL+  L+LG++ H    K+      +  A   L+SMY + G
Sbjct: 155 LEGHPLSSFTLVSVLLACSHLAEDLRLGREAHAFALKNGFLDGDERFAFNALLSMYARLG 214

Query: 222 DLEDACKLFLEIQRKD-----VVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITF 276
            ++DA  LF  +   D     VVTWN M+S   Q G+  +A+ +   M   G++PD ITF
Sbjct: 215 LVDDAQMLFGSVDTTDSPGGGVVTWNTMVSLLVQSGRCGEAIEVIYDMVARGVRPDGITF 274

Query: 277 VALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDL 318
            + L AC+   ++ LG +    ++ D  +AA     + +VD+
Sbjct: 275 ASALPACSQLEMLSLGREMHAYVLKDSDLAANSFVASALVDM 316



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 89/376 (23%), Positives = 160/376 (42%), Gaps = 58/376 (15%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKI----PQPDVVSYNIMLSCILLNSDDVV 56
           M  +  V +NS++A     R  L     L D +    P       +++L+C  L  D  +
Sbjct: 122 MPSRDAVTFNSLIAALCLFRRWLPALDALRDMLLEGHPLSSFTLVSVLLACSHLAEDLRL 181

Query: 57  A--AFDFFQR---LPIKDTASWNTMISGFVQKKNMAKARDLFLAM-----PEKNSVSWSA 106
              A  F  +   L   +  ++N ++S + +   +  A+ LF ++     P    V+W+ 
Sbjct: 182 GREAHAFALKNGFLDGDERFAFNALLSMYARLGLVDDAQMLFGSVDTTDSPGGGVVTWNT 241

Query: 107 MISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGL 166
           M+S  ++ G+  +A+E                                    ++  M+  
Sbjct: 242 MVSLLVQSGRCGEAIE------------------------------------VIYDMVAR 265

Query: 167 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK-SPLCKDTTALTPLISMYCKCGDLED 225
           G+RP+  + +S L  CS L  L LG+++H  V K S L  ++   + L+ MY     +  
Sbjct: 266 GVRPDGITFASALPACSQLEMLSLGREMHAYVLKDSDLAANSFVASALVDMYASHERVGV 325

Query: 226 ACKLFLEIQ--RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE-GMKPDSITFVALLLA 282
           A ++F  +    + +  WNAM+ GYAQ G  E+AL LF +M+ E G+ P   T   +L A
Sbjct: 326 ARRVFDMVPGGHRQLGLWNAMVCGYAQAGMDEEALELFARMEAEAGVVPSETTIAGVLPA 385

Query: 283 CNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPA 342
           C  +     G +     V   G+A  P     ++DL  R G +  A  +   +  +P+  
Sbjct: 386 CARSETF-AGKEAVHGYVLKRGMADNPFVQNALMDLYARLGDMEAARWIFAAI--EPRDV 442

Query: 343 I-FGTLLSACRVHKRL 357
           + + TL++ C V   +
Sbjct: 443 VSWNTLITGCVVQGHI 458


>gi|356502497|ref|XP_003520055.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 852

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 208/544 (38%), Positives = 301/544 (55%), Gaps = 54/544 (9%)

Query: 11  SVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIML-SCILLNSDDVVAAFDFFQRLPIKD 69
           S L     + G L  A+ + + +   DVVS+N M+  C+    ++   A   F+++  ++
Sbjct: 354 SALVDMYAKCGDLGSAKRVLENMEDDDVVSWNSMIVGCVRHGFEE--EAILLFKKMHARN 411

Query: 70  T--------ASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAV 121
                    +  N  I G +  K++     +     E   +  +A++  Y +   L+ A 
Sbjct: 412 MKIDHYTFPSVLNCCIVGRIDGKSVHCL--VIKTGFENYKLVSNALVDMYAKTEDLNCAY 469

Query: 122 ELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLG 181
            +F+    K V++WT++++GY      +N   E+ LK    M   G+ P+   ++S+L  
Sbjct: 470 AVFEKMFEKDVISWTSLVTGY-----TQNGSHEESLKTFCDMRISGVSPDQFIVASILSA 524

Query: 182 CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTW 241
           C+ L+ L+ GKQVH    K  L    +    L++MY KCG L+DA  +F+ +  +DV+TW
Sbjct: 525 CAELTLLEFGKQVHSDFIKLGLRSSLSVNNSLVTMYAKCGCLDDADAIFVSMHVRDVITW 584

Query: 242 NAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN 301
            A+I GYA++GKG  +L+ F +MK                                    
Sbjct: 585 TALIVGYARNGKGRDSLKYFQQMK-----------------------------------K 609

Query: 302 DYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAE 361
            YGI   P+HY CM+DL GR GKL EA +++ +M  KP   ++  LL+ACRVH  L+L E
Sbjct: 610 IYGIEPGPEHYACMIDLFGRLGKLDEAKEILNQMDVKPDATVWKALLAACRVHGNLELGE 669

Query: 362 FAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTV 421
            AA NLF L P NA   YV L+N+Y A +KWDD A+IR  MK   + K PG SWIE+ + 
Sbjct: 670 RAATNLFELEPMNAMP-YVMLSNMYLAARKWDDAAKIRRLMKSKGITKEPGCSWIEMNSR 728

Query: 422 VHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKL 481
           +H F S DR HP    I+ K+ E+ +R+K  GYVPD+ F+LH +  E KE  L +HSEKL
Sbjct: 729 LHTFISEDRGHPREAEIYSKIDEIIRRIKEVGYVPDMNFSLHDMDREGKEAGLAYHSEKL 788

Query: 482 AIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSC 541
           A+AFGL+  P G PIR+FKNLRVCGDCH A KYIS +  R II+RD+  FHHFK+G CSC
Sbjct: 789 AVAFGLLASPPGAPIRIFKNLRVCGDCHSAMKYISGVFTRHIILRDSNCFHHFKEGECSC 848

Query: 542 GDYW 545
            DYW
Sbjct: 849 EDYW 852



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 85/265 (32%), Positives = 142/265 (53%), Gaps = 10/265 (3%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVV 133
           N +++G  +   +  AR+LF  M +++  +W+ M+SGY   G+L +A ELF     +S +
Sbjct: 119 NQLLNGLSKSGQIDDARELFDKMLQRDEYTWNTMVSGYANVGRLVEARELFNGFSSRSSI 178

Query: 134 AWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ 193
            W+++ISGY +FG    + A D  K +R+    G +P+  +L S+L GCS L  +Q G+ 
Sbjct: 179 TWSSLISGYCRFG--RQAEAFDLFKRMRLE---GQKPSQYTLGSILRGCSALGLIQKGEM 233

Query: 194 VHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF--LEIQRKDVVTWNAMISGYAQH 251
           +H  V K+    +   +  L+ MY KC  + +A  LF  L   + + V W AM++GYAQ+
Sbjct: 234 IHGYVVKNGFESNVYVVAGLVDMYAKCRHISEAEILFKGLAFNKGNHVLWTAMVTGYAQN 293

Query: 252 GKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV-NDYGIAAKPD 310
           G   KA+  F  M  EG++ +  TF ++L AC+       G Q    +V N +G  A   
Sbjct: 294 GDDHKAIEFFRYMHTEGVESNQFTFPSILTACSSVSAHCFGEQVHGCIVRNGFGCNAYVQ 353

Query: 311 HYTCMVDLLGRAGKLVEAVDLIKKM 335
             + +VD+  + G L  A  +++ M
Sbjct: 354 --SALVDMYAKCGDLGSAKRVLENM 376



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 122/480 (25%), Positives = 205/480 (42%), Gaps = 85/480 (17%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQ 63
           ++  + N +L G +K  G++ DA+ELFDK+ Q D  ++N M+S    N   +V A + F 
Sbjct: 113 QSIFHSNQLLNGLSKS-GQIDDARELFDKMLQRDEYTWNTMVSG-YANVGRLVEARELFN 170

Query: 64  RLPIKDTASWNTMISGFVQKKNMAKARDLFLAM------PEKNS-------------VSW 104
               + + +W+++ISG+ +    A+A DLF  M      P + +             +  
Sbjct: 171 GFSSRSSITWSSLISGYCRFGRQAEAFDLFKRMRLEGQKPSQYTLGSILRGCSALGLIQK 230

Query: 105 SAMISGYI--------------------ECGQLDKAVELFKVAPVK--SVVAWTAMISGY 142
             MI GY+                    +C  + +A  LFK       + V WTAM++GY
Sbjct: 231 GEMIHGYVVKNGFESNVYVVAGLVDMYAKCRHISEAEILFKGLAFNKGNHVLWTAMVTGY 290

Query: 143 MKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSP 202
                 +N      ++  R M   G+  N  +  S+L  CS +S+   G+QVH  + ++ 
Sbjct: 291 -----AQNGDDHKAIEFFRYMHTEGVESNQFTFPSILTACSSVSAHCFGEQVHGCIVRNG 345

Query: 203 LCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFD 262
              +    + L+ MY KCGDL  A ++   ++  DVV+WN+MI G  +HG  E+A+ LF 
Sbjct: 346 FGCNAYVQSALVDMYAKCGDLGSAKRVLENMEDDDVVSWNSMIVGCVRHGFEEEAILLFK 405

Query: 263 KMKDEGMKPDSITFVALLLAC---------NHAGLVDLGIQYF----DSMVNDYGIAAKP 309
           KM    MK D  TF ++L  C          H  ++  G + +    +++V+ Y   AK 
Sbjct: 406 KMHARNMKIDHYTFPSVLNCCIVGRIDGKSVHCLVIKTGFENYKLVSNALVDMY---AKT 462

Query: 310 DHYTC------------------MVDLLGRAGKLVEAVDLIKKMPF---KPQPAIFGTLL 348
           +   C                  +V    + G   E++     M      P   I  ++L
Sbjct: 463 EDLNCAYAVFEKMFEKDVISWTSLVTGYTQNGSHEESLKTFCDMRISGVSPDQFIVASIL 522

Query: 349 SACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVV 408
           SAC     L+  +    +   L   ++      L  +YA     DD   I +SM   +V+
Sbjct: 523 SACAELTLLEFGKQVHSDFIKLGLRSSLSVNNSLVTMYAKCGCLDDADAIFVSMHVRDVI 582



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 81/179 (45%), Gaps = 3/179 (1%)

Query: 172 ASSLSSVLLGCSHLSSLQLGKQVH--QLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 229
           A S  S+      L+ L    Q+   + +F   L +D      ++S Y   G L +A +L
Sbjct: 109 ADSYQSIFHSNQLLNGLSKSGQIDDARELFDKMLQRDEYTWNTMVSGYANVGRLVEAREL 168

Query: 230 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLV 289
           F     +  +TW+++ISGY + G+  +A  LF +M+ EG KP   T  ++L  C+  GL+
Sbjct: 169 FNGFSSRSSITWSSLISGYCRFGRQAEAFDLFKRMRLEGQKPSQYTLGSILRGCSALGLI 228

Query: 290 DLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLL 348
             G      +V + G  +       +VD+  +   + EA  L K + F     +  T +
Sbjct: 229 QKGEMIHGYVVKN-GFESNVYVVAGLVDMYAKCRHISEAEILFKGLAFNKGNHVLWTAM 286


>gi|356529748|ref|XP_003533450.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Glycine max]
          Length = 604

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 207/544 (38%), Positives = 305/544 (56%), Gaps = 46/544 (8%)

Query: 42  NIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK-- 99
           N++ +C L     +  A   F+++    +  +NTMI G V   N+ +A  L++ M E+  
Sbjct: 67  NLVATCALSRWGSMEYACSIFRQIEEPGSFEYNTMIRGNVNSMNLEEALLLYVEMLERGI 126

Query: 100 -------------------------------------NSVSWSAMISGYIECGQLDKAVE 122
                                                +    + +I+ Y +CG ++ A  
Sbjct: 127 EPDNFTYPFVLKACSLLGALKEGVQIHAHVFKAGLEGDVFVQNGLINMYGKCGAIEHASV 186

Query: 123 LFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGI-RPNASSLSSVLLG 181
           +F+    KSV +W+++I  +         W E  L LL  M G G  R   S L S L  
Sbjct: 187 VFEQMDEKSVASWSSIIGAHASV----EMWHE-CLMLLGDMSGEGRHRAEESILVSALSA 241

Query: 182 CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTW 241
           C+HL S   G+ +H ++ ++    +    T LI MY K G LE    +F  + +K+  ++
Sbjct: 242 CTHLGSPNFGRCIHGILLRNISELNVAVKTSLIDMYVKSGSLEKGLCVFQNMAQKNRYSY 301

Query: 242 NAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN 301
             +I+G A HG+G +AL +F  M +EG+ PD + +V +L AC+HAGLV+ G+Q F+ +  
Sbjct: 302 TVIITGLAIHGRGREALSVFSDMLEEGLAPDDVVYVGVLSACSHAGLVNEGLQCFNRLQF 361

Query: 302 DYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAE 361
           ++ I     HY CMVDL+GRAG L  A DLIK MP KP   ++ +LLSAC+VH  L++ E
Sbjct: 362 EHKIKPTIQHYGCMVDLMGRAGMLKGAYDLIKSMPIKPNDVVWRSLLSACKVHHNLEIGE 421

Query: 362 FAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTV 421
            AA N+F LN  N  G Y+ LAN+YA  KKW DVARIR  M E ++V+ PG+S +E    
Sbjct: 422 IAAENIFKLNQHNP-GDYLVLANMYARAKKWADVARIRTEMAEKHLVQTPGFSLVEANRN 480

Query: 422 VHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKL 481
           V++F S D+  P+  +I++ ++++E ++K  GY PD+   L  V E+ K Q L  HS+KL
Sbjct: 481 VYKFVSQDKSQPQCETIYDMIQQMEWQLKFEGYTPDMSQVLLDVDEDEKRQRLKHHSQKL 540

Query: 482 AIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSC 541
           AIAF LI+   G+ IR+ +N+R+C DCH  TK+IS I +REI VRD  RFHHFKDGTCSC
Sbjct: 541 AIAFALIQTSEGSRIRISRNIRMCNDCHTYTKFISVIYEREITVRDRNRFHHFKDGTCSC 600

Query: 542 GDYW 545
            DYW
Sbjct: 601 KDYW 604


>gi|297736155|emb|CBI24193.3| unnamed protein product [Vitis vinifera]
          Length = 1083

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 210/578 (36%), Positives = 314/578 (54%), Gaps = 51/578 (8%)

Query: 10   NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCI------------------LLN 51
            NS+++ F+     +++A  +FD + + D++S+N M+S                    L N
Sbjct: 515  NSLISMFS-SFSSVEEACYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMRHLHN 573

Query: 52   SDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNM-----------------AKARD--- 91
              +              D   W   I G V K  +                  ++ D   
Sbjct: 574  ETNSTTLSSLLSVCSSVDNLKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAEL 633

Query: 92   LFLAMPEKNSVSWSAMISGYIECGQ----LDKAVELFKVAPVKSVVAWTAMISGYMKFGY 147
            +F AM E++ +SW++M++ Y++ G+    L    EL ++     V  W A+I G+     
Sbjct: 634  VFQAMTERDLISWNSMMACYVQDGKCLDGLKILAELLQMGKPDRVT-WNALIGGH----- 687

Query: 148  VENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDT 207
             EN    + +K  +++   GI  N  ++ S L   ++L+ L+ G+Q+H LV K     D 
Sbjct: 688  AENEEPNEAVKAYKLIREKGIPANYITMVS-LAATANLAVLEEGQQLHGLVIKLGFESDL 746

Query: 208  TALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE 267
                  + MY KCG++ D  K+  +   +  ++WN +IS +A+HG  +KA   F +M   
Sbjct: 747  HVTNAAMDMYGKCGEMHDVLKMLPQPINRSRLSWNILISAFARHGCFQKARETFHEMLKL 806

Query: 268  GMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVE 327
            G KPD +TFV+LL ACNH GLVD G+ Y+DSM  ++G+    +H  C++DLLGR+G+L  
Sbjct: 807  GPKPDHVTFVSLLSACNHGGLVDEGLAYYDSMTREFGVFPGIEHCVCIIDLLGRSGRLSH 866

Query: 328  AVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYA 387
            A   IK+MP  P    + +LL+ACR+H  L+LA   A +L  L+P++ +  YV  +N+ A
Sbjct: 867  AEGFIKEMPVPPNDLAWRSLLAACRIHGNLELARKTAEHLLELDPSDDSA-YVLYSNVCA 925

Query: 388  AMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEK 447
               KW+DV  +R  M  NN+ K P  SW+++   VH F  G++ HP+   I  KL EL K
Sbjct: 926  TSGKWEDVENLRKEMGSNNIKKQPACSWVKLKDKVHSFGMGEKYHPQASRISAKLGELMK 985

Query: 448  RMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGD 507
              K AGYVPD  FALH + EE KE  L  HSE+LA+AFGLI  P  + +R+FKNLRVCGD
Sbjct: 986  MTKEAGYVPDTSFALHDMDEEQKEYNLWNHSERLALAFGLINTPESSTLRIFKNLRVCGD 1045

Query: 508  CHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
            CH   K++S I  R+I++RD  RFHHF  G CSCGDYW
Sbjct: 1046 CHSVYKFVSGIVGRKIVLRDPYRFHHFSGGKCSCGDYW 1083



 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 101/376 (26%), Positives = 158/376 (42%), Gaps = 87/376 (23%)

Query: 42  NIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNS 101
           N  L    +   DV+AA + F  +P +   SW  M+SG+ Q     KA  LF  M     
Sbjct: 68  NTKLIIFYVKVGDVIAARNVFDGMPERSVVSWTAMVSGYSQNGRFEKAFVLFSDMRHCGV 127

Query: 102 VSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLR 161
            +  A++  + +CG+++ A  LF     + VV+W AMI GY   G+     A+D   + R
Sbjct: 128 KANHALVDFHSKCGKMEDASYLFGTMMERDVVSWNAMIGGYAVQGF-----ADDSFCMFR 182

Query: 162 MMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVF---------------------- 199
            M+  G+ P+  +L SVL   +    L +  Q+H ++                       
Sbjct: 183 SMLRGGLVPDCYTLGSVLRASAEGGGLIIANQIHGIITQLGYGSYDIVTGLLINAYAKNG 242

Query: 200 ---------KSPLCKD---TTAL-------------TPLISMYCKCGDLEDACKLFLEIQ 234
                    K  L KD   +TAL               LI MY K G++EDA + F E++
Sbjct: 243 SLRSAKDLRKGMLKKDLFSSTALITGYAHEGIYTMGNALIDMYAKSGEIEDAKRAFDEME 302

Query: 235 RKDVVTWNAMISGYAQHGKG---------------------------------EKALRLF 261
            K+V++W ++ISGYA+HG G                                 E+A+ LF
Sbjct: 303 EKNVISWTSLISGYAKHGYGHMAHARYVFDEMRHRNEASWSTMLSGYVRVGLYEEAVGLF 362

Query: 262 DKMKDEGMKPDSITFVALLLACNHAG-LVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLG 320
            +M   G++P+     +L+ AC+ +G + D G Q    +V   GI       T +V   G
Sbjct: 363 CQMWGLGVEPNGFMVASLITACSRSGYMADEGFQVHGFVVKT-GILGDVYVGTALVHFYG 421

Query: 321 RAGKLVEAVDLIKKMP 336
             G +  A  L ++MP
Sbjct: 422 SIGLVYNAQKLFEEMP 437



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 88/345 (25%), Positives = 160/345 (46%), Gaps = 36/345 (10%)

Query: 17  AKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNS----DDVVAAFDFFQRLPIKDTAS 72
           + + G L  A ++   I Q    SY+I ++ +L+N+      + +A D  + +  KD  S
Sbjct: 203 SAEGGGLIIANQIHGIITQLGYGSYDI-VTGLLINAYAKNGSLRSAKDLRKGMLKKDLFS 261

Query: 73  WNTMISGFVQKK----------------NMAKARDLFLAMPEKNSVSWSAMISGYIE--C 114
              +I+G+  +                  +  A+  F  M EKN +SW+++ISGY +   
Sbjct: 262 STALITGYAHEGIYTMGNALIDMYAKSGEIEDAKRAFDEMEEKNVISWTSLISGYAKHGY 321

Query: 115 GQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASS 174
           G +  A  +F     ++  +W+ M+SGY++ G  E     + + L   M GLG+ PN   
Sbjct: 322 GHMAHARYVFDEMRHRNEASWSTMLSGYVRVGLYE-----EAVGLFCQMWGLGVEPNGFM 376

Query: 175 LSSVLLGCSHLSSL-QLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI 233
           ++S++  CS    +   G QVH  V K+ +  D    T L+  Y   G + +A KLF E+
Sbjct: 377 VASLITACSRSGYMADEGFQVHGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQKLFEEM 436

Query: 234 QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVD--- 290
              +VV+W +++ GY+  G   + L ++ +M+ EG+  +  TF  +  +C   GL++   
Sbjct: 437 PDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEGVSGNQNTFATVTSSC---GLLEDQV 493

Query: 291 LGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335
           LG Q    ++  YG          ++ +      + EA  +   M
Sbjct: 494 LGYQVLGHIIQ-YGFEDSVSVANSLISMFSSFSSVEEACYVFDHM 537



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 79/307 (25%), Positives = 142/307 (46%), Gaps = 47/307 (15%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDF-FQRLPIK 68
           N+++  +AK  G+++DA+  FD++ + +V+S+  ++S    +    +A   + F  +  +
Sbjct: 279 NALIDMYAKS-GEIEDAKRAFDEMEEKNVISWTSLISGYAKHGYGHMAHARYVFDEMRHR 337

Query: 69  DTASWNTMISGFVQKKNMAKARDLFLAM----PEKNSVSWSAMI-----SGYI------- 112
           + ASW+TM+SG+V+     +A  LF  M     E N    +++I     SGY+       
Sbjct: 338 NEASWSTMLSGYVRVGLYEEAVGLFCQMWGLGVEPNGFMVASLITACSRSGYMADEGFQV 397

Query: 113 ------------------------ECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYV 148
                                     G +  A +LF+  P  +VV+WT+++ GY   G  
Sbjct: 398 HGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSGN- 456

Query: 149 ENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTT 208
                 + L + + M   G+  N ++ ++V   C  L    LG QV   + +       +
Sbjct: 457 ----PGEVLNVYQRMRQEGVSGNQNTFATVTSSCGLLEDQVLGYQVLGHIIQYGFEDSVS 512

Query: 209 ALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEG 268
               LISM+     +E+AC +F  +   D+++WNAMIS YA HG   ++LR F  M+   
Sbjct: 513 VANSLISMFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMRHLH 572

Query: 269 MKPDSIT 275
            + +S T
Sbjct: 573 NETNSTT 579



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 85/382 (22%), Positives = 172/382 (45%), Gaps = 27/382 (7%)

Query: 5   TTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVS-----YNIMLSCILLNSDDVVAAF 59
             V+W S++ G++   G   +   ++ ++ Q  V         +  SC LL  +D V  +
Sbjct: 440 NVVSWTSLMVGYSDS-GNPGEVLNVYQRMRQEGVSGNQNTFATVTSSCGLL--EDQVLGY 496

Query: 60  DFFQRL---PIKDTAS-WNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECG 115
                +     +D+ S  N++IS F    ++ +A  +F  M E + +SW+AMIS Y   G
Sbjct: 497 QVLGHIIQYGFEDSVSVANSLISMFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHHG 556

Query: 116 QLDKAVELFK-VAPVKSVVAWTAMISGYMKFGYVEN-SWAEDGLKLLRMMIGLGIRPNAS 173
              +++  F  +  + +    T + S       V+N  W   G  +  +++ LG+  N  
Sbjct: 557 LCRESLRCFHWMRHLHNETNSTTLSSLLSVCSSVDNLKW---GRGIHGLVVKLGLDSNVC 613

Query: 174 SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL---F 230
             +++L     L S     +  +LVF++   +D  +   +++ Y + G   D  K+    
Sbjct: 614 ICNTLLT----LYSEAGRSEDAELVFQAMTERDLISWNSMMACYVQDGKCLDGLKILAEL 669

Query: 231 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVD 290
           L++ + D VTWNA+I G+A++ +  +A++ +  ++++G+  + IT V+L    N A L +
Sbjct: 670 LQMGKPDRVTWNALIGGHAENEEPNEAVKAYKLIREKGIPANYITMVSLAATANLAVLEE 729

Query: 291 LGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSA 350
              Q    +V   G  +        +D+ G+ G++ + + ++ + P       +  L+SA
Sbjct: 730 --GQQLHGLVIKLGFESDLHVTNAAMDMYGKCGEMHDVLKMLPQ-PINRSRLSWNILISA 786

Query: 351 CRVHKRLDLAEFAAMNLFNLNP 372
              H     A      +  L P
Sbjct: 787 FARHGCFQKARETFHEMLKLGP 808



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 64/141 (45%), Gaps = 9/141 (6%)

Query: 191 GKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQ 250
           G  +H  +  +    D    T LI  Y K GD+  A  +F  +  + VV+W AM+SGY+Q
Sbjct: 49  GHLIHTHLITNGFGSDLHLNTKLIIFYVKVGDVIAARNVFDGMPERSVVSWTAMVSGYSQ 108

Query: 251 HGKGEKALRLFDKMKDEGMKPDSITFVALLLACNH--------AGLVDLGIQYFDSMVND 302
           +G+ EKA  LF  M+  G+K +    V     C            +++  +  +++M+  
Sbjct: 109 NGRFEKAFVLFSDMRHCGVKANH-ALVDFHSKCGKMEDASYLFGTMMERDVVSWNAMIGG 167

Query: 303 YGIAAKPDHYTCMVDLLGRAG 323
           Y +    D   CM   + R G
Sbjct: 168 YAVQGFADDSFCMFRSMLRGG 188


>gi|225457315|ref|XP_002281558.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
           [Vitis vinifera]
 gi|297733922|emb|CBI15169.3| unnamed protein product [Vitis vinifera]
          Length = 615

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 200/511 (39%), Positives = 296/511 (57%), Gaps = 13/511 (2%)

Query: 42  NIMLSCILLNSDDVVAAFDFFQRLP---IKDTASWNTMISGFVQ--KKNMAKARDLFLAM 96
           N M+ C   ++  + + F + Q        D++++ T++    Q  ++ + KA    +  
Sbjct: 111 NSMIRCYTDSNKHLHSVFIYTQMWKNGIFPDSSTFPTVLKSVAQLCRQELGKAIHCCIIQ 170

Query: 97  P--EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAE 154
              E N    +A+++ Y  C  +  A ++F   P +++V+W A+I+GY       N    
Sbjct: 171 MGFESNVYVSTALVNMYGTCSSVSDARQVFDEIPDRNIVSWNALITGYN-----HNRMFR 225

Query: 155 DGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLI 214
             + + R M   G +P   ++  VLL C+HL +L  G+ +   +  + L  +    T LI
Sbjct: 226 KVIDVFREMQIAGAKPVEVTMVGVLLACAHLGALNQGRWIDDYIDHNRLRLNVFVGTALI 285

Query: 215 SMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSI 274
            MY KCG +++A K+F  ++ K+V TWN +ISGYA +G+GE AL+ F +M  E  KPD +
Sbjct: 286 DMYAKCGVVDEAEKIFKAMRVKNVYTWNVLISGYAMNGRGESALQAFSRMIMEKFKPDEV 345

Query: 275 TFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKK 334
           TF+ +L AC H GLV+ G  YF SM  ++G+  + +HY CMVDLLGRAG L EA  LI+ 
Sbjct: 346 TFLGVLCACCHQGLVNEGRTYFTSMKEEFGLRPRIEHYGCMVDLLGRAGFLDEAQQLIQA 405

Query: 335 MPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDD 394
           M  +P P I+  LL ACR+H  + L EFA   L  L P N    YV LAN+YA  ++WD 
Sbjct: 406 MSMQPDPIIWRELLGACRIHGNIQLGEFAIKKLLELEPNNGEN-YVLLANLYARDQRWDK 464

Query: 395 VARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGY 454
           V  +R  M    V K+PG S IE+  VV+EF   + + P    +++ L ++ K++KLAGY
Sbjct: 465 VGEVREMMDCRRVRKVPGCSSIEIDNVVYEFVVSNYIKPGFEEVYKLLADMNKKLKLAGY 524

Query: 455 VPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKY 514
           V D   A + + EE KE  L++HSEKLA+AFGL+K P G  +R+ KNLR+C DCH   K 
Sbjct: 525 VADTGMASYDIEEEEKEHSLMYHSEKLALAFGLLKSPSGLTLRIVKNLRICQDCHGFFKI 584

Query: 515 ISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           +S + +R+I VRD  RFHHF  G CSC DYW
Sbjct: 585 VSKVYRRDISVRDRNRFHHFVGGACSCKDYW 615



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 71/299 (23%), Positives = 117/299 (39%), Gaps = 45/299 (15%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNS-----DDV 55
           M  ++ V  ++ L         + DA+++FD+IP  ++VS+N +++    N       DV
Sbjct: 171 MGFESNVYVSTALVNMYGTCSSVSDARQVFDEIPDRNIVSWNALITGYNHNRMFRKVIDV 230

Query: 56  VAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP--EKNSVSWSAMISGYIE 113
                     P++ T     +    +   N  +  D ++       N    +A+I  Y +
Sbjct: 231 FREMQIAGAKPVEVTMVGVLLACAHLGALNQGRWIDDYIDHNRLRLNVFVGTALIDMYAK 290

Query: 114 CGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNAS 173
           CG +D+A ++FK   VK+V  W  +IS     GY  N   E  L+    MI    +P+  
Sbjct: 291 CGVVDEAEKIFKAMRVKNVYTWNVLIS-----GYAMNGRGESALQAFSRMIMEKFKPDEV 345

Query: 174 SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI 233
           +   VL  C H   +  G+      F S   K+   L P I  Y                
Sbjct: 346 TFLGVLCACCHQGLVNEGRT----YFTS--MKEEFGLRPRIEHY---------------- 383

Query: 234 QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 292
                     M+    + G  ++A +L   M    M+PD I +  LL AC   G + LG
Sbjct: 384 --------GCMVDLLGRAGFLDEAQQLIQAM---SMQPDPIIWRELLGACRIHGNIQLG 431


>gi|356510957|ref|XP_003524199.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Glycine max]
          Length = 617

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 186/475 (39%), Positives = 291/475 (61%), Gaps = 9/475 (1%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVV 133
           N +I  +V+  ++  AR +F  MPE++ +SW+ +I  Y   G +  A +LF   PVK +V
Sbjct: 149 NAVIDMYVKCGSLRCARMVFDEMPERDVISWTGLIVAYTRIGDMRAARDLFDGLPVKDMV 208

Query: 134 AWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ 193
            WTAM++GY      +N+   D L++ R +   G+  +  +L  V+  C+ L + +    
Sbjct: 209 TWTAMVTGY-----AQNAMPMDALEVFRRLRDEGVEIDEVTLVGVISACAQLGASKYANW 263

Query: 194 VHQLVFKSPLCKDTTAL--TPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQH 251
           +  +   S        L  + LI MY KCG++E+A  +F  ++ ++V ++++MI G+A H
Sbjct: 264 IRDIAESSGFGVGDNVLVGSALIDMYSKCGNVEEAYDVFKGMRERNVFSYSSMIVGFAIH 323

Query: 252 GKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDH 311
           G+   A++LF  M + G+KP+ +TFV +L AC+HAGLVD G Q F SM   YG+A   + 
Sbjct: 324 GRARAAIKLFYDMLETGVKPNHVTFVGVLTACSHAGLVDQGQQLFASMEKCYGVAPTAEL 383

Query: 312 YTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLN 371
           Y CM DLL RAG L +A+ L++ MP +   A++G LL A  VH   D+AE A+  LF L 
Sbjct: 384 YACMTDLLSRAGYLEKALQLVETMPMESDGAVWGALLGASHVHGNPDVAEIASKRLFELE 443

Query: 372 PANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEV-GTVVHEFRSGDR 430
           P N  G Y+ L+N YA+  +WDDV+++R  ++E N+ K PG+SW+E    ++H+F +GD 
Sbjct: 444 PDN-IGNYLLLSNTYASAGRWDDVSKVRKLLREKNLKKNPGWSWVEAKNGMIHKFVAGDV 502

Query: 431 VHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKV 490
            HP++  I ++L +L +R+K  GY P+L    + + +  K  LL+ HSEKLA+AFGL+  
Sbjct: 503 SHPKINEIKKELNDLLERLKGIGYQPNLSSLPYGINDREKRLLLMAHSEKLALAFGLLST 562

Query: 491 PLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
            +G+ I++ KNLR+C DCH      S +  R+I+VRD TRFHHF +G CSC ++W
Sbjct: 563 DVGSTIKIMKNLRICEDCHIVMCGASKVTGRKIVVRDNTRFHHFLNGACSCSNFW 617



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 80/321 (24%), Positives = 142/321 (44%), Gaps = 66/321 (20%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
           N+V+  + K  G L+ A+ +FD++P+ DV+S+  ++        D+ AA D F  LP+KD
Sbjct: 149 NAVIDMYVKC-GSLRCARMVFDEMPERDVISWTGLI-VAYTRIGDMRAARDLFDGLPVKD 206

Query: 70  TASWNTMISGFVQKKNMAKARDLFLAMPEK------------------------------ 99
             +W  M++G+ Q      A ++F  + ++                              
Sbjct: 207 MVTWTAMVTGYAQNAMPMDALEVFRRLRDEGVEIDEVTLVGVISACAQLGASKYANWIRD 266

Query: 100 -----------NSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYV 148
                      N +  SA+I  Y +CG +++A ++FK    ++V ++++MI G+   G  
Sbjct: 267 IAESSGFGVGDNVLVGSALIDMYSKCGNVEEAYDVFKGMRERNVFSYSSMIVGFAIHGR- 325

Query: 149 ENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK----SPLC 204
               A   +KL   M+  G++PN  +   VL  CSH   +  G+Q+   + K    +P  
Sbjct: 326 ----ARAAIKLFYDMLETGVKPNHVTFVGVLTACSHAGLVDQGQQLFASMEKCYGVAPTA 381

Query: 205 KDTTALTPLISMYCKCGDLEDACKLFLEI-QRKDVVTWNAMISGYAQHGKGEKA----LR 259
           +    +T L+S   + G LE A +L   +    D   W A++     HG  + A     R
Sbjct: 382 ELYACMTDLLS---RAGYLEKALQLVETMPMESDGAVWGALLGASHVHGNPDVAEIASKR 438

Query: 260 LFDKMKDEGMKPDSITFVALL 280
           LF+      ++PD+I    LL
Sbjct: 439 LFE------LEPDNIGNYLLL 453



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 49/205 (23%), Positives = 85/205 (41%), Gaps = 8/205 (3%)

Query: 186 SSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK---LFLEIQRKDVVTWN 242
           SSL   K+VH  ++   L + +  LT L+ +      +        LF ++   +   W 
Sbjct: 19  SSLNQAKEVHAQIYIKNLQQSSYVLTKLLRLVTALPHVPLHSYPRLLFSQLHTPNPFAWT 78

Query: 243 AMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVND 302
           A+I  YA  G   +AL  +  M+   + P S TF AL  AC       LG Q     +  
Sbjct: 79  ALIRAYALRGPLSQALSFYSSMRKRRVSPISFTFSALFSACAAVRHSALGAQLHAQTLLL 138

Query: 303 YGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEF 362
            G ++       ++D+  + G L  A  +  +MP +   +  G +++  R+    D+   
Sbjct: 139 GGFSSDLYVNNAVIDMYVKCGSLRCARMVFDEMPERDVISWTGLIVAYTRIG---DMR-- 193

Query: 363 AAMNLFNLNPANAAGCYVQLANIYA 387
           AA +LF+  P      +  +   YA
Sbjct: 194 AARDLFDGLPVKDMVTWTAMVTGYA 218


>gi|357111691|ref|XP_003557645.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Brachypodium distachyon]
          Length = 598

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 204/520 (39%), Positives = 301/520 (57%), Gaps = 13/520 (2%)

Query: 33  IPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDL 92
           +P PD  S N +L     ++   VA     + L   DT ++  ++    +   +     L
Sbjct: 85  LPSPDPFSLNTVLRIFASSARPRVALALHRRHLAPPDTHTYPPLLQACARLLALRYGEGL 144

Query: 93  FLAMPEKNSVSW----SAMISGYIECGQLDKAVELFK--VAPVKSVVAWTAMISGYMKFG 146
                +   VS     ++++  Y  CG  + A  +F     P +++V+W ++++G+    
Sbjct: 145 HAEACKNGLVSLVFVKNSLVHLYGACGLFESAHRVFDEIPPPERNLVSWNSVLNGF---- 200

Query: 147 YVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKD 206
              N    + L + R M+ +   P+  ++ SVL  C+ +  L LG++VH  V K  L  +
Sbjct: 201 -AANGRPNEVLTVFREMLEVEFAPDGFTVVSVLTACAEIGVLALGRRVHVFVAKVGLVGN 259

Query: 207 TTALTPLISMYCKCGDLEDACKLFLEIQ-RKDVVTWNAMISGYAQHGKGEKALRLFDKMK 265
             A   LI +Y KCG ++DA K+F E+   + VV+W ++I G A +G G  AL+LF  M+
Sbjct: 260 AHAGNALIDLYAKCGGVDDARKMFGEMGVGRTVVSWTSLIVGLAVNGFGMDALQLFSMME 319

Query: 266 DEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKL 325
            E + P  IT V +L AC+H GLVD G +YFD M  +YGI  + +H  CMVDLLGRAG++
Sbjct: 320 REKLMPTEITMVGVLYACSHCGLVDDGFRYFDQMKAEYGITPRIEHLGCMVDLLGRAGRV 379

Query: 326 VEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANI 385
            EA + I  MP +P   ++ TLL AC +HK+L++ E A   L  L+P ++ G YV L+N+
Sbjct: 380 EEAHNYITTMPLEPNAVVWRTLLGACAMHKKLEIGEAAWARLVELDPGHS-GDYVLLSNL 438

Query: 386 YAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKEL 445
           YA + +W DV  +R +M  + V K PG+S +E+   V+EF  GDR HPE   I+E L ++
Sbjct: 439 YAGVGRWADVHVLRKTMVTHGVRKNPGHSLVELRNSVYEFVMGDRSHPETDQIYEMLGDI 498

Query: 446 EKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVC 505
            +R++  GY+P     L  + +E KE  L +HSE+LAIAF L+K   GTPIR+ KNLRVC
Sbjct: 499 AERLRRQGYIPHTSNVLADIEDEEKESALNYHSERLAIAFALLKSLPGTPIRIVKNLRVC 558

Query: 506 GDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           GDCH A K IS +  REIIVRD +RFHHFK G CSC DYW
Sbjct: 559 GDCHMAIKLISKVYDREIIVRDRSRFHHFKGGACSCKDYW 598



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 57/247 (23%), Positives = 114/247 (46%), Gaps = 17/247 (6%)

Query: 21  GKLKDAQELFDKIPQPD--VVSYNIMLSCILLNS--DDVVAAF-DFFQRLPIKDTASWNT 75
           G  + A  +FD+IP P+  +VS+N +L+    N   ++V+  F +  +     D  +  +
Sbjct: 171 GLFESAHRVFDEIPPPERNLVSWNSVLNGFAANGRPNEVLTVFREMLEVEFAPDGFTVVS 230

Query: 76  MISGFVQKKNMAKARDLFLAMPE----KNSVSWSAMISGYIECGQLDKAVELFKVAPV-K 130
           +++   +   +A  R + + + +     N+ + +A+I  Y +CG +D A ++F    V +
Sbjct: 231 VLTACAEIGVLALGRRVHVFVAKVGLVGNAHAGNALIDLYAKCGGVDDARKMFGEMGVGR 290

Query: 131 SVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQL 190
           +VV+WT++I      G   N +  D L+L  MM    + P   ++  VL  CSH   +  
Sbjct: 291 TVVSWTSLI-----VGLAVNGFGMDALQLFSMMEREKLMPTEITMVGVLYACSHCGLVDD 345

Query: 191 G-KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ-RKDVVTWNAMISGY 248
           G +   Q+  +  +      L  ++ +  + G +E+A      +    + V W  ++   
Sbjct: 346 GFRYFDQMKAEYGITPRIEHLGCMVDLLGRAGRVEEAHNYITTMPLEPNAVVWRTLLGAC 405

Query: 249 AQHGKGE 255
           A H K E
Sbjct: 406 AMHKKLE 412


>gi|357127001|ref|XP_003565175.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Brachypodium distachyon]
          Length = 849

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 207/547 (37%), Positives = 320/547 (58%), Gaps = 19/547 (3%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRL--PI 67
           N+++A + +  G L  A  +FD I    V S+N ++     N +   AA + F+ +    
Sbjct: 311 NALIAAYGRC-GCLLHACRVFDGICSKMVSSWNALIGAHAQNGE-ASAAIELFREMTNAC 368

Query: 68  KDTASWNTMISGFVQKKNM-----AKARDLFLAMP--EKNSVSWSAMISGYIECGQLDKA 120
                W ++ S  +   N+      KA   F+     EK+S    +++S YI+CG+   A
Sbjct: 369 GQKPDWFSIGSLLLACGNLKHLLHGKAAHGFILRNGLEKDSFIRVSLLSVYIQCGRESLA 428

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGL--GIRPNASSLSSV 178
             LF     K  V+W  MI+GY      +N    + L+L R M     G  P+  + +S 
Sbjct: 429 RVLFDAVEEKDEVSWNTMIAGY-----SQNGLPGESLQLFREMQSKKGGHWPSLLAATSA 483

Query: 179 LLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDV 238
           L+ CS L +++LGK++H    K+ LC+D+   + +I MY KCG ++DA   F  ++ KD 
Sbjct: 484 LVACSELPAVRLGKEMHCFALKADLCEDSFLSSSIIDMYSKCGSVDDARVFFDRLKAKDA 543

Query: 239 VTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDS 298
           V+W  MI+GYA +G+G++A+ L+DKM  EGM+PD  T++ LL+AC HAG+++ G+ +F  
Sbjct: 544 VSWTVMITGYAVNGRGKEAVGLYDKMGREGMEPDGFTYLGLLMACGHAGMLEDGLCFFQE 603

Query: 299 MVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLD 358
           M N   I AK +HY C++ +L RAG+  +AV L++ MP +P   I  ++LSAC +H  ++
Sbjct: 604 MRNLPKIEAKLEHYACVIGMLSRAGRFADAVALMEVMPEEPDAKILSSVLSACHMHGEVE 663

Query: 359 LAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEV 418
           L +  A  L  L P  A   YV  +N+YA  ++WD++ ++R  +++  V K PG SWI++
Sbjct: 664 LGKKVADKLLELEPHKAEH-YVLASNMYAGSRQWDEMRKVRKMLRDAGVAKEPGCSWIDI 722

Query: 419 GTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHS 478
              V+ F +G+   PE+  + +    LE++++ AGY PD    LH + EE K + L +HS
Sbjct: 723 AGKVYSFVAGENSLPEMHKVRKMWYSLEEKIRAAGYAPDTTVMLHELEEEEKVEALRWHS 782

Query: 479 EKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGT 538
           EK AIAFGL++    T +RVFKN+R+C DCH A K IS +  REI+VRD  RFHHF+DG 
Sbjct: 783 EKQAIAFGLLRTAGPTKVRVFKNIRMCKDCHNAAKLISKVADREIVVRDKKRFHHFRDGL 842

Query: 539 CSCGDYW 545
           CSCGDYW
Sbjct: 843 CSCGDYW 849



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 66/233 (28%), Positives = 116/233 (49%), Gaps = 27/233 (11%)

Query: 94  LAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWA 153
           L + + +    ++++S Y  CG++D A ++F+    +++V+W A+++             
Sbjct: 92  LGLADGDPFVGNSLVSMYGRCGRVDDAEKVFEGMAGRNLVSWNALMAAVAD--------P 143

Query: 154 EDGLKLLRMMI---GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTAL 210
             GL+L R  +   G    P+ ++L +VL  C+ L+  + G+ VH L  KS         
Sbjct: 144 RRGLELFRDCLEDLGGTAAPDEATLVTVLPMCAALAWPETGRAVHGLAVKSGWDAAPRVS 203

Query: 211 TPLISMYCKCGDLEDACKLFLEI---QRKDVVTWNAMISGYAQHGKGEKALRLFD--KMK 265
             L+ MY KCG++ DA   FLE      ++VV+WN M+ GYA++G+   A  L    +M+
Sbjct: 204 NVLVDMYAKCGEMADAECAFLEAPPGAGRNVVSWNVMLGGYARNGEAGAAFGLLREMQME 263

Query: 266 DEGMKPDSITFVALLLACN-----------HAGLVDLGIQYFDSMVNDYGIAA 307
           + G+  D IT +++L  C+           HA +V  G+     MV +  IAA
Sbjct: 264 ERGVPADEITMLSVLPVCSGLPELAKLRELHAFVVRRGLHLTGDMVPNALIAA 316



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/179 (27%), Positives = 84/179 (46%), Gaps = 12/179 (6%)

Query: 155 DGLKLLRMMIGL--GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCK-DTTALT 211
           D L +L  ++    G+ P+  +L   L  C        G+QVH +  K  L   D     
Sbjct: 48  DALAILPRLLAASDGVAPDRFTLPPALKSCRG----DDGRQVHAVAAKLGLADGDPFVGN 103

Query: 212 PLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEG--M 269
            L+SMY +CG ++DA K+F  +  +++V+WNA+++  A   +G +  R  D ++D G   
Sbjct: 104 SLVSMYGRCGRVDDAEKVFEGMAGRNLVSWNALMAAVADPRRGLELFR--DCLEDLGGTA 161

Query: 270 KPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEA 328
            PD  T V +L  C      + G +    +    G  A P     +VD+  + G++ +A
Sbjct: 162 APDEATLVTVLPMCAALAWPETG-RAVHGLAVKSGWDAAPRVSNVLVDMYAKCGEMADA 219


>gi|147789959|emb|CAN73858.1| hypothetical protein VITISV_024322 [Vitis vinifera]
          Length = 1539

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 210/559 (37%), Positives = 334/559 (59%), Gaps = 23/559 (4%)

Query: 1    MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
            + + T V+ ++ L     + G   +  ++F  +P+ D VS+N ++  +  +   V  A  
Sbjct: 990  LGLDTDVSVSNALLALYAETGCFTECLKVFSLMPEYDQVSWNSVIGALSDSEASVSQAVK 1049

Query: 61   FF----------QRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISG 110
            +F           R+   +  S  + +S   +  +   A  L   + +  ++  +A++S 
Sbjct: 1050 YFLEMMRGGWGLSRVTFINILSAVSSLS-LHEVSHQIHALVLKYCLSDDTAIG-NALLSC 1107

Query: 111  YIECGQLDKAVELF-KVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIR 169
            Y +CG++++  ++F +++  +  V+W +MISGY     + N      + L+  M+  G R
Sbjct: 1108 YGKCGEMNECEKIFARMSETRDEVSWNSMISGY-----IHNELLHKAMDLVWFMMQKGQR 1162

Query: 170  PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 229
             ++ + ++VL  C+ +++L+ G +VH    ++ +  D    + L+ MY KCG ++ A + 
Sbjct: 1163 LDSFTFATVLSACASVATLERGMEVHACGIRACMESDVVVGSALVDMYSKCGRIDYASRF 1222

Query: 230  FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSIT-FVALLLACNHAGL 288
            F  +  ++V +WN+MISGYA+HG GEKAL+LF +M  +G  PD +   + +L AC+H G 
Sbjct: 1223 FELMPLRNVYSWNSMISGYARHGHGEKALKLFTRMMLDGQPPDHVAPLLGVLSACSHVGF 1282

Query: 289  VDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLL 348
            V+ G ++F SM   Y ++ + +H++CMVDLLGRAGKL E  D I  MP KP   I+ T+L
Sbjct: 1283 VEEGFEHFKSMSEVYRLSPRVEHFSCMVDLLGRAGKLDEVGDFINSMPMKPNVLIWRTVL 1342

Query: 349  SAC-RVHKR-LDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENN 406
             AC R + R  +L   AA  L  L P NA   YV LAN+YA+ +KW+DVA+ R +MKE  
Sbjct: 1343 GACCRANGRNTELGRRAAEMLLELEPQNAVN-YVLLANMYASGEKWEDVAKARXAMKEAA 1401

Query: 407  VVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVG 466
            V K  G SW+ +   VH F +GD++HPE   I++KL+EL ++M+ AGY+P  ++AL  + 
Sbjct: 1402 VKKEAGCSWVTMKDGVHVFVAGDKLHPEKDXIYDKLRELNRKMRDAGYIPQTKYALFDLE 1461

Query: 467  EEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVR 526
             E KE+LL +HSEK+A+AF L +     PIR+ KNLRVCGDCH A  YIS I  R+I++R
Sbjct: 1462 LENKEELLSYHSEKIAVAFVLTRQS-ALPIRIMKNLRVCGDCHSAFGYISKIVGRQIVLR 1520

Query: 527  DTTRFHHFKDGTCSCGDYW 545
            D+ RFHHF+DG CSCGDYW
Sbjct: 1521 DSNRFHHFEDGKCSCGDYW 1539



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 89/351 (25%), Positives = 152/351 (43%), Gaps = 59/351 (16%)

Query: 37   DVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM 96
            DVV  N+++S      D    A   F R+ I+++ SWN++IS + ++ +   A DLF +M
Sbjct: 681  DVVVCNVLISMYGSCLDSANDARSVFDRIGIRNSISWNSIISVYSRRGDXVSAYDLFSSM 740

Query: 97   PEK---------------------NSVSW------------------------SAMISGY 111
             ++                     +SV +                        SA++SG+
Sbjct: 741  QKEGLGFSFKPNEYTFGSLITAACSSVDFGLCVLEQMLARVEKSGFLQDLYVGSALVSGF 800

Query: 112  IECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPN 171
               G  D A  +F+   V++VV+   ++      G V+    E   K+   M  L +  N
Sbjct: 801  ARFGLTDDAKNIFEQMGVRNVVSMNGLM-----VGLVKQKQGEAAAKVFHEMKDL-VGIN 854

Query: 172  ASSLSSVLLGCSHLSSLQ----LGKQVHQLVFKSPLCKDTTAL-TPLISMYCKCGDLEDA 226
            + S   +L   S  S L+     G++VH  V ++ L  +  A+   L++MY K G + DA
Sbjct: 855  SDSYVVLLSAFSEFSVLEEGRRKGREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADA 914

Query: 227  CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHA 286
            C +F  +  KD V+WN++ISG  Q+   E A   F +M+  G  P + T ++ L +C   
Sbjct: 915  CSVFELMVEKDSVSWNSLISGLDQNECSEDAAESFLRMRRTGSMPSNFTLISTLSSCASL 974

Query: 287  GLVDLGIQ-YFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 336
            G + LG Q + D +    G+         ++ L    G   E + +   MP
Sbjct: 975  GWIMLGEQIHCDGL--KLGLDTDVSVSNALLALYAETGCFTECLKVFSLMP 1023



 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 69/234 (29%), Positives = 107/234 (45%), Gaps = 45/234 (19%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVV 133
           NT+I+ +V+  ++  A+ LF  M  +N V+W+ +ISGY + G+ D+A   F         
Sbjct: 583 NTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGYTQNGKPDEACARF--------- 633

Query: 134 AWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGC--SHLSSLQLG 191
                                      R M+  G  PN  +  S L  C  S  S  +LG
Sbjct: 634 ---------------------------RDMVRAGFIPNHYAFGSALRACQESGPSGCKLG 666

Query: 192 KQVHQLVFKSPLCKDTTALTPLISMYCKCGD-LEDACKLFLEIQRKDVVTWNAMISGYAQ 250
            Q+H L+ K+    D      LISMY  C D   DA  +F  I  ++ ++WN++IS Y++
Sbjct: 667 VQIHGLISKTRYGSDVVVCNVLISMYGSCLDSANDARSVFDRIGIRNSISWNSIISVYSR 726

Query: 251 HGKGEKALRLFDKMKDEGM----KPDSITFVALLLACNHAGLVDLGIQYFDSMV 300
            G    A  LF  M+ EG+    KP+  TF +L+ A   +  VD G+   + M+
Sbjct: 727 RGDXVSAYDLFSSMQKEGLGFSFKPNEYTFGSLITAACSS--VDFGLCVLEQML 778



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 81/369 (21%), Positives = 169/369 (45%), Gaps = 23/369 (6%)

Query: 10   NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAA--FDFFQRLPI 67
            +++++GFA+  G   DA+ +F+++   +VVS N ++  ++       AA  F   + L  
Sbjct: 794  SALVSGFAR-FGLTDDAKNIFEQMGVRNVVSMNGLMVGLVKQKQGEAAAKVFHEMKDLVG 852

Query: 68   KDTASWNTMISGF----VQKKNMAKARDLF-----LAMPEKNSVSWSAMISGYIECGQLD 118
             ++ S+  ++S F    V ++   K R++        + +      + +++ Y + G + 
Sbjct: 853  INSDSYVVLLSAFSEFSVLEEGRRKGREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIA 912

Query: 119  KAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSV 178
             A  +F++   K  V+W ++ISG       +N  +ED  +    M   G  P+  +L S 
Sbjct: 913  DACSVFELMVEKDSVSWNSLISGL-----DQNECSEDAAESFLRMRRTGSMPSNFTLIST 967

Query: 179  LLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDV 238
            L  C+ L  + LG+Q+H    K  L  D +    L+++Y + G   +  K+F  +   D 
Sbjct: 968  LSSCASLGWIMLGEQIHCDGLKLGLDTDVSVSNALLALYAETGCFTECLKVFSLMPEYDQ 1027

Query: 239  VTWNAMISGYA-QHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFD 297
            V+WN++I   +       +A++ F +M   G     +TF+ +L A +   L ++  Q   
Sbjct: 1028 VSWNSVIGALSDSEASVSQAVKYFLEMMRGGWGLSRVTFINILSAVSSLSLHEVSHQ-IH 1086

Query: 298  SMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSAC----RV 353
            ++V  Y ++        ++   G+ G++ E   +  +M        + +++S       +
Sbjct: 1087 ALVLKYCLSDDTAIGNALLSCYGKCGEMNECEKIFARMSETRDEVSWNSMISGYIHNELL 1146

Query: 354  HKRLDLAEF 362
            HK +DL  F
Sbjct: 1147 HKAMDLVWF 1155


>gi|302764608|ref|XP_002965725.1| hypothetical protein SELMODRAFT_84657 [Selaginella moellendorffii]
 gi|300166539|gb|EFJ33145.1| hypothetical protein SELMODRAFT_84657 [Selaginella moellendorffii]
          Length = 502

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 196/456 (42%), Positives = 281/456 (61%), Gaps = 16/456 (3%)

Query: 100 NSVSWSAMISGYIECGQLDKAVELF---KVAPVKSVVAWTAMISGYMKFGYVENSWAEDG 156
           N +  +A+++ Y +C ++ +A++LF        ++VV+W+AMI  Y   G       ++ 
Sbjct: 53  NLLVQNALVNFYAKCSKIPEAMKLFGEMSERTSRTVVSWSAMIGAYALHGR-----GQEA 107

Query: 157 LKLLRMMIGLG-IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTAL--TPL 213
           L L   M   G + PNA + + V   C  +  L+ G+++H L   S   K ++ +    L
Sbjct: 108 LLLFHRMRKDGRVEPNAMTFTGVFNACGVVEDLEQGREIHALAMASGELKSSSPILENAL 167

Query: 214 ISMYCKCGDLEDACKLFLEIQRKDV----VTWNAMISGYAQHGKGEKALRLFDKMKDEGM 269
           ++M+ + G LE+A K+F  +   D     V+W AMI+  AQHG+G++AL LF +M  EGM
Sbjct: 168 LNMFVRFGSLEEARKVFDAMDHPDAFSNSVSWTAMIAALAQHGQGDEALELFKEMNLEGM 227

Query: 270 KPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAV 329
             D+ TF+ +L AC+HAGL+   +++F SMV DY IA    HY   +D +GRAG+L +A 
Sbjct: 228 VADATTFICVLRACSHAGLIKESLEFFHSMVEDYAIAPTETHYCRALDTIGRAGRLQDAE 287

Query: 330 DLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAM 389
           +LI  MPF P+   + TLL+ACR+H + + A   A  L  L P ++   Y  L N+YAA 
Sbjct: 288 ELIHSMPFHPETVTWKTLLNACRIHSQAERATKVAELLAKLAPEDSMA-YTLLGNVYAAT 346

Query: 390 KKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRM 449
           +++ D  R+R SM +  + K+P  S+IEV   VHEF +GDR HP    I  +L++L  RM
Sbjct: 347 ERYGDQMRVRKSMTDRGLKKVPRKSFIEVKNKVHEFVAGDRAHPSRDEILLELEKLGGRM 406

Query: 450 KLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCH 509
           + AGYVP+ +  LHAV EE KEQL+  HSEKLAIAFGLI  P GTP+ + KNLRVC DCH
Sbjct: 407 REAGYVPNTKDVLHAVNEEEKEQLIGLHSEKLAIAFGLIATPPGTPLLIVKNLRVCSDCH 466

Query: 510 RATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
            ATK I+ I +R I+VRDT RFHH +DG CSC DYW
Sbjct: 467 AATKVIAKIMRRRIVVRDTHRFHHLEDGQCSCKDYW 502



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 94/178 (52%), Gaps = 5/178 (2%)

Query: 163 MIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGD 222
           M   G+ P+  ++S  L  CS L S + G ++H+   +     +      L++ Y KC  
Sbjct: 10  MQSHGLFPSDFTISVALSSCSSLKSFERGARIHRWADEHGYGSNLLVQNALVNFYAKCSK 69

Query: 223 LEDACKLFLEIQR---KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEG-MKPDSITFVA 278
           + +A KLF E+     + VV+W+AMI  YA HG+G++AL LF +M+ +G ++P+++TF  
Sbjct: 70  IPEAMKLFGEMSERTSRTVVSWSAMIGAYALHGRGQEALLLFHRMRKDGRVEPNAMTFTG 129

Query: 279 LLLACNHAGLVDLGIQ-YFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335
           +  AC     ++ G + +  +M +    ++ P     ++++  R G L EA  +   M
Sbjct: 130 VFNACGVVEDLEQGREIHALAMASGELKSSSPILENALLNMFVRFGSLEEARKVFDAM 187


>gi|357504267|ref|XP_003622422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355497437|gb|AES78640.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 952

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 203/554 (36%), Positives = 319/554 (57%), Gaps = 20/554 (3%)

Query: 4   KTTVNWNSVLAGFAK----QRGKLKDAQELFDKIPQPDVVS-YNIMLSCILLN---SDDV 55
           +  V WNS+ + +      Q+G L   +E+     +PD+V+  +I+ +C  L    S  V
Sbjct: 407 RNVVTWNSLSSCYVNCGFPQKG-LNVFREMVLNGVKPDLVTMLSILHACSDLQDLKSGKV 465

Query: 56  VAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECG 115
           +  F     + ++D    N ++S + +   + +A+ +F  +P +   SW+ +++ Y    
Sbjct: 466 IHGFAVRHGM-VEDVFVCNALLSLYAKCVCVREAQVVFDLIPHREVASWNGILTAYFTNK 524

Query: 116 QLDKAVELFKVAPVKSV----VAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPN 171
           + +K + +F       V    + W+ +I G +K     NS  E+ +++ R M  +G +P+
Sbjct: 525 EYEKGLYMFSQMNRDEVKADEITWSVVIGGCVK-----NSRIEEAMEIFRKMQTMGFKPD 579

Query: 172 ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFL 231
            +++ S+L  CS    L++GK++H  VF+     D      L+ MY KCG L  +  +F 
Sbjct: 580 ETTIYSILRACSLSECLRMGKEIHCYVFRHWKDWDLARTNALVDMYAKCGGLSLSRNVFD 639

Query: 232 EIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDL 291
            +  KDV +WN MI     HG G++AL LF+KM    +KPDS TF  +L AC+H+ LV+ 
Sbjct: 640 MMPIKDVFSWNTMIFANGMHGNGKEALSLFEKMLLSMVKPDSATFTCVLSACSHSMLVEE 699

Query: 292 GIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSAC 351
           G+Q F+SM  D+ +  + +HYTC+VD+  RAG L EA   I++MP +P    +   L+ C
Sbjct: 700 GVQIFNSMSRDHLVEPEAEHYTCVVDIYSRAGCLEEAYGFIQRMPMEPTAIAWKAFLAGC 759

Query: 352 RVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMP 411
           RV+K ++LA+ +A  LF ++P N +  YV L NI    K W + ++IR  MKE  + K P
Sbjct: 760 RVYKNVELAKISAKKLFEIDP-NGSANYVTLFNILVTAKLWSEASKIRKLMKERGITKTP 818

Query: 412 GYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKE 471
           G SW  VG  VH F +GD+ + E   I+  L EL  ++K AGY PD ++ LH + +E K 
Sbjct: 819 GCSWFHVGNRVHTFVAGDKSNMESDKIYNFLDELFAKIKAAGYKPDTDYVLHDIDQEEKA 878

Query: 472 QLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRF 531
           + L  HSEKLA+AFG++ +   + IRVFKNLR+CGDCH A KY+S +    I+VRD+ RF
Sbjct: 879 ESLCNHSEKLAVAFGILNLNGQSTIRVFKNLRICGDCHNAIKYMSNVVGVTIVVRDSLRF 938

Query: 532 HHFKDGTCSCGDYW 545
           HHFK+G CSC D+W
Sbjct: 939 HHFKNGNCSCKDFW 952



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 82/307 (26%), Positives = 154/307 (50%), Gaps = 21/307 (6%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK- 68
           +S    F  +   +++AQ +FD +P  DVV++N + SC  +N        + F+ + +  
Sbjct: 179 SSAFVNFYAKCLCVREAQTVFDLMPHRDVVTWNSLSSC-YVNCGFPQKGLNVFREMVLDG 237

Query: 69  ---DTASWNTMISGFVQKKNMAKARDLF-----LAMPEKNSVSWSAMISGYIECGQLDKA 120
              D  + + ++S     +++   + +        M E   VS +A+++ Y  C  + +A
Sbjct: 238 VKPDPVTVSCILSACSDLQDLKSGKAIHGFALKHGMVENVFVS-NALVNLYESCLCVREA 296

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLL 180
             +F + P ++V+ W ++ S Y+  G+      + GL + R M   G++P+  ++SS+L 
Sbjct: 297 QAVFDLMPHRNVITWNSLASCYVNCGF-----PQKGLNVFREMGLNGVKPDPMAMSSILP 351

Query: 181 GCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVT 240
            CS L  L+ GK +H    K  + +D    T L+++Y  C  + +A  +F  +  ++VVT
Sbjct: 352 ACSQLKDLKSGKTIHGFAVKHGMVEDVFVCTALVNLYANCLCVREAQTVFDLMPHRNVVT 411

Query: 241 WNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN-----HAGLVDLGIQY 295
           WN++ S Y   G  +K L +F +M   G+KPD +T +++L AC+      +G V  G   
Sbjct: 412 WNSLSSCYVNCGFPQKGLNVFREMVLNGVKPDLVTMLSILHACSDLQDLKSGKVIHGFAV 471

Query: 296 FDSMVND 302
              MV D
Sbjct: 472 RHGMVED 478



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 89/361 (24%), Positives = 172/361 (47%), Gaps = 32/361 (8%)

Query: 11  SVLAGFAKQRGKLK---DAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPI 67
           S+   F    GK K    A+ +FD +   DVV++N + +C  +N        + F+++ +
Sbjct: 76  SIGNAFIHAYGKCKCVEGARRVFDDLVARDVVTWNSLSAC-YVNCGFPQQGLNVFRKMGL 134

Query: 68  K----DTASWNTMISGFVQKKNMAKARDL--FL---AMPEKNSVSWSAMISGYIECGQLD 118
                +  + ++++ G    +++   +++  F+    M E   VS SA ++ Y +C  + 
Sbjct: 135 NKVKANPLTVSSILPGCSDLQDLKSGKEIHGFVVRHGMVEDVFVS-SAFVNFYAKCLCVR 193

Query: 119 KAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSV 178
           +A  +F + P + VV W ++ S Y+  G+      + GL + R M+  G++P+  ++S +
Sbjct: 194 EAQTVFDLMPHRDVVTWNSLSSCYVNCGF-----PQKGLNVFREMVLDGVKPDPVTVSCI 248

Query: 179 LLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDV 238
           L  CS L  L+ GK +H    K  + ++      L+++Y  C  + +A  +F  +  ++V
Sbjct: 249 LSACSDLQDLKSGKAIHGFALKHGMVENVFVSNALVNLYESCLCVREAQAVFDLMPHRNV 308

Query: 239 VTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNH-----AGLVDLGI 293
           +TWN++ S Y   G  +K L +F +M   G+KPD +   ++L AC+      +G    G 
Sbjct: 309 ITWNSLASCYVNCGFPQKGLNVFREMGLNGVKPDPMAMSSILPACSQLKDLKSGKTIHGF 368

Query: 294 QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRV 353
                MV D  +       T +V+L      + EA  +   MP +    +    LS+C V
Sbjct: 369 AVKHGMVEDVFVC------TALVNLYANCLCVREAQTVFDLMPHR--NVVTWNSLSSCYV 420

Query: 354 H 354
           +
Sbjct: 421 N 421



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 35/140 (25%), Positives = 65/140 (46%), Gaps = 1/140 (0%)

Query: 145 FGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLC 204
           FG + +    + +K+       GI+P+     +V   C+        KQ H    +  + 
Sbjct: 14  FG-IPHGLPNEAIKIYTSSRARGIKPDKPVFMAVAKACAASRDALKVKQFHDDATRCGVM 72

Query: 205 KDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKM 264
            D +     I  Y KC  +E A ++F ++  +DVVTWN++ + Y   G  ++ L +F KM
Sbjct: 73  SDVSIGNAFIHAYGKCKCVEGARRVFDDLVARDVVTWNSLSACYVNCGFPQQGLNVFRKM 132

Query: 265 KDEGMKPDSITFVALLLACN 284
               +K + +T  ++L  C+
Sbjct: 133 GLNKVKANPLTVSSILPGCS 152


>gi|224082530|ref|XP_002306730.1| predicted protein [Populus trichocarpa]
 gi|222856179|gb|EEE93726.1| predicted protein [Populus trichocarpa]
          Length = 578

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 200/524 (38%), Positives = 290/524 (55%), Gaps = 47/524 (8%)

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK---------------------- 99
           F ++    T  WN +I GF+Q  N   A   + +M  K                      
Sbjct: 62  FSQIRTPSTNDWNAIIRGFIQSPNPTNAFAWYKSMISKSRKVDALTCSFVLKACARVLAR 121

Query: 100 -----------------NSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGY 142
                            +++  + ++  Y + G++D A ++F     + + +W A+ISG+
Sbjct: 122 LESIQIHTHIVRKGFIADALLGTTLLDVYAKVGEIDSAEKVFDEMVKRDIASWNALISGF 181

Query: 143 MKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSP 202
                 + S   + L L + M   G +PN  S+   L  C+ L   + G+++H  +    
Sbjct: 182 -----AQGSKPTEALSLFKRMEIDGFKPNEISVLGALSACAQLGDFKEGEKIHGYIKVER 236

Query: 203 LCKDTTALTPLISMYCKCGDLEDACKLFLEIQ-RKDVVTWNAMISGYAQHGKGEKALRLF 261
              +      +I MY KCG ++ A  +F  +  RKD+VTWN MI  +A HG+G KAL LF
Sbjct: 237 FDMNAQVCNVVIDMYAKCGFVDKAYLVFESMSCRKDIVTWNTMIMAFAMHGEGCKALELF 296

Query: 262 DKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGR 321
           +KM   G+ PD ++++A+L ACNH GLV+ G + F+SM N  G+     HY  +VDLLGR
Sbjct: 297 EKMDQSGVSPDDVSYLAVLCACNHGGLVEEGFRLFNSMEN-CGVKPNVKHYGSVVDLLGR 355

Query: 322 AGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQ 381
           AG+L EA D++  MP  P   ++ TLL A R H+ +++AE  +  L  +  +N  G +V 
Sbjct: 356 AGRLHEAYDIVNSMPTVPDIVLWQTLLGASRTHRNVEIAETVSRKLVEMG-SNHCGDFVL 414

Query: 382 LANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEK 441
           L+N+YAA ++W DV R+R +MK  +V K+PG S+IE   V+H+F + D+ H     I+ K
Sbjct: 415 LSNVYAARERWADVGRVREAMKNRDVKKVPGLSYIEGNGVIHKFYNADKSHESWREIYAK 474

Query: 442 LKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKN 501
           L E+  R+K  GYV +  F LH +GEE KE +L  HSEKLA+AFGLI    GTPI+V KN
Sbjct: 475 LDEIRFRVKEYGYVAETSFVLHDIGEEDKENVLGHHSEKLAVAFGLISTSEGTPIQVIKN 534

Query: 502 LRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           LR+CGDCH   K IS I  REIIVRD  RFH FK+G CSC DYW
Sbjct: 535 LRICGDCHFVIKLISKIYDREIIVRDRVRFHRFKEGFCSCRDYW 578


>gi|326520445|dbj|BAK07481.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 596

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 202/520 (38%), Positives = 302/520 (58%), Gaps = 13/520 (2%)

Query: 33  IPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDL 92
           +P PD  S N +L     ++   +A     +RL   DT ++  ++    +   + +   L
Sbjct: 83  LPDPDPFSLNTVLRIAASSAHPRIALALHRRRLAPPDTHTYPPLLQACTRLLALREGESL 142

Query: 93  FLAMPEKNSVSW----SAMISGYIECGQLDKAVELFKVAPV--KSVVAWTAMISGYMKFG 146
                +   V+     ++++  Y  CG  + A  +F   PV  +++V+W ++++G+    
Sbjct: 143 HAEAAKNGLVALVFVKNSLVHHYGACGLFESAHRVFDEIPVLERNLVSWNSVMNGF---- 198

Query: 147 YVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKD 206
              N    + L + R  +   + P+  ++ SVL  C+ + +L LG++VH    K  L  +
Sbjct: 199 -AANGRPNEVLTIFRETLEADLMPDGFTIVSVLTACAEIGALTLGRRVHVFASKVGLVGN 257

Query: 207 TTALTPLISMYCKCGDLEDACKLFLEIQ-RKDVVTWNAMISGYAQHGKGEKALRLFDKMK 265
           +     LI +Y KCG +EDA K+F E+   + VV+W ++I G A +G G+ AL LF  M+
Sbjct: 258 SHVGNALIDLYAKCGGVEDAWKVFEEMGVARTVVSWTSLIVGLAGNGFGKDALELFGLME 317

Query: 266 DEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKL 325
            E + P  IT V +L AC+H GLVD G +YF+ M + YGIA   +H  CMVDLLGRAG++
Sbjct: 318 RERLIPTDITMVGVLYACSHCGLVDDGFRYFNEMQDKYGIAPGIEHLGCMVDLLGRAGRV 377

Query: 326 VEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANI 385
            EA + I  MP +P   ++ TLL AC +HK+L+L E A   L  L+P ++ G YV L+N+
Sbjct: 378 EEAHNYITTMPVEPNAVVWRTLLGACAMHKKLELGEAAWARLVELDPGHS-GDYVLLSNL 436

Query: 386 YAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKEL 445
           YAA+ +W D   +R +M  + V K PG+S +E+   V+EF  GDR HPE   I++ L E+
Sbjct: 437 YAAVGRWADAHVLRKTMATHGVRKNPGHSLVELRNSVYEFVMGDRSHPESDQIYQTLAEI 496

Query: 446 EKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVC 505
            +R++  GYVP     L  + EE KE  L +HSE+LAIAF L+K   G+PIR+ KNLR+C
Sbjct: 497 AERLRCQGYVPRTSNVLADIEEEEKETALNYHSERLAIAFALLKSLPGSPIRIVKNLRMC 556

Query: 506 GDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           GDCH   K IS +  REIIVRD +RFHHFK G CSC DYW
Sbjct: 557 GDCHLVIKLISKVYDREIIVRDRSRFHHFKGGECSCKDYW 596


>gi|225432688|ref|XP_002282622.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Vitis vinifera]
          Length = 684

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 208/540 (38%), Positives = 306/540 (56%), Gaps = 27/540 (5%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNS--DDVVAAFDFFQRLPIKDTASWNTMIS 78
           G  ++A+++FD++P+ ++ ++N  LS  +L    DD + AF  F+         W   + 
Sbjct: 157 GLTEEARKMFDEMPERNIATWNAYLSNSVLEGRYDDALTAFIEFRH------EGWEPNLI 210

Query: 79  GFVQKKNM-AKARDLFLAMP----------EKNSVSWSAMISGYIECGQLDKAVELFKVA 127
            F    N  A A  L L             E +    + +I  Y +C Q+  +  +F   
Sbjct: 211 TFCAFLNACAGASYLRLGRQLHGFVLQSGFEADVSVANGLIDFYGKCHQVGCSEIIFSGI 270

Query: 128 PVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSS 187
              + V+W +MI       YV+N   E    +       GI P    +SSVL  C+ LS 
Sbjct: 271 SKPNDVSWCSMI-----VSYVQNDEEEKACLVFLRARKEGIEPTDFMVSSVLSACAGLSV 325

Query: 188 LQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISG 247
           L++GK VH L  K+ +  +    + L+ MY KCG +EDA + F E+  +++VTWNAMI G
Sbjct: 326 LEVGKSVHTLAVKACVVGNIFVGSALVDMYGKCGSIEDAERAFDEMPERNLVTWNAMIGG 385

Query: 248 YAQHGKGEKALRLFDKMK--DEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGI 305
           YA  G+ + A+ LFD+M      + P+ +TFV +L AC+ AG V++G++ F+SM   YGI
Sbjct: 386 YAHQGQADMAVTLFDEMTCGSHRVAPNYVTFVCVLSACSRAGSVNVGMEIFESMRGRYGI 445

Query: 306 AAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAM 365
               +HY C+VDLLGRAG + +A   IKKMP +P  +++G LL A ++  + +L + AA 
Sbjct: 446 EPGAEHYACVVDLLGRAGMVEQAYQFIKKMPIRPTVSVWGALLGASKMFGKSELGKVAAD 505

Query: 366 NLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEF 425
           NLF L+P ++ G +V L+N++AA  +W++   +R  MK+  + K  G SWI  G  VH F
Sbjct: 506 NLFELDPLDS-GNHVLLSNMFAAAGRWEEATLVRKEMKDVGIKKGAGCSWITAGNAVHVF 564

Query: 426 RSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAF 485
           ++ D  H     I   L +L   M+ AGY+PD  FAL  + EE K   + +HSEK+A+AF
Sbjct: 565 QAKDTSHERNSEIQAMLAKLRGEMEAAGYIPDTSFALFDLEEEEKAMEVWYHSEKIALAF 624

Query: 486 GLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           GLI +P G PIR+ KNLR+CGDCH A K+IS I  REIIVRD   FH F+D  CSC DYW
Sbjct: 625 GLISIPAGVPIRITKNLRICGDCHSAIKFISGIVGREIIVRDNNLFHRFRDNQCSCRDYW 684



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 67/221 (30%), Positives = 101/221 (45%), Gaps = 6/221 (2%)

Query: 101 SVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLL 160
           S  ++ +++ Y +  + + A  L  + P +SVV WTA+I+G      V+N      L   
Sbjct: 42  SFIYNHLVNMYSKLDRPNSAQLLLSLTPNRSVVTWTALIAGS-----VQNGRFTSALFHF 96

Query: 161 RMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKC 220
             M    I+PN  +          L S  +GKQVH L  K+    D         MY K 
Sbjct: 97  SNMRRDSIQPNDFTFPCAFKASGSLRSPLVGKQVHALAVKAGQISDVFVGCSAFDMYSKA 156

Query: 221 GDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 280
           G  E+A K+F E+  +++ TWNA +S     G+ + AL  F + + EG +P+ ITF A L
Sbjct: 157 GLTEEARKMFDEMPERNIATWNAYLSNSVLEGRYDDALTAFIEFRHEGWEPNLITFCAFL 216

Query: 281 LACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGR 321
            AC  A  + LG Q     V   G  A       ++D  G+
Sbjct: 217 NACAGASYLRLGRQ-LHGFVLQSGFEADVSVANGLIDFYGK 256


>gi|302785459|ref|XP_002974501.1| hypothetical protein SELMODRAFT_101455 [Selaginella moellendorffii]
 gi|300158099|gb|EFJ24723.1| hypothetical protein SELMODRAFT_101455 [Selaginella moellendorffii]
          Length = 635

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 210/575 (36%), Positives = 317/575 (55%), Gaps = 54/575 (9%)

Query: 7   VNWNSVLAGFAKQR-------------GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSD 53
           ++++ VL GF   R             G L+ A+ +F   P+ +V S+ IM++    N  
Sbjct: 79  IHYHIVLCGFKSSRYLCNLLVEMYGKCGSLQAAKSVFHITPRRNVFSWTIMVAAFAHNGH 138

Query: 54  DVVA---------------AFDFFQRLPIKDTASWNTMISGFVQKKNMAKA---RDLFLA 95
            + A               +  F + L      SW  +  G    + +A      D+F+A
Sbjct: 139 YMDALNLLEIMDLEGISPNSITFIELLGAVAALSW--LDRGRALHRRIACCGFLADIFVA 196

Query: 96  MPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAED 155
                    + +I+ Y +C  L  A  +F+    +SV+AWTA+++ Y   G+       D
Sbjct: 197 ---------NCLINMYAKCRSLADACSVFESLTSRSVIAWTALVAAYALNGFFR-----D 242

Query: 156 GLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLIS 215
            LK+  +M   G+ P   +  +V+  C+ ++   +G++VH  V  +    +      LI+
Sbjct: 243 ALKVFLLMTLDGVEPTEVTFVTVVDVCADIAVFGIGREVHG-VIDARSEANVCVGNALIN 301

Query: 216 MYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE-----GMK 270
           MY KC   ++A K+F  +QRKD++TWN+MI+ Y Q+G G +AL ++ +M++      G+ 
Sbjct: 302 MYGKCASPDEARKVFDAMQRKDIITWNSMIAVYGQNGYGFQALEIYKRMQESRMTILGIT 361

Query: 271 PDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVD 330
            D ITF+ +L AC+HAGLV    + + SM+ DYG         C++DLLGRAG L EA +
Sbjct: 362 HDDITFIGVLFACSHAGLVKDSCKLYSSMIGDYGFKPTSLQCGCLIDLLGRAGWLDEAEE 421

Query: 331 LIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMK 390
            I  MP+ P   I+  LL AC  H  ++ A  AA  +  L P ++ G YV L+N+YA  +
Sbjct: 422 FINSMPYHPDHTIWTILLGACITHADVERAARAADRIMALRPTDS-GSYVALSNLYALAE 480

Query: 391 KWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMK 450
           +WDD+AR+R  M +  V KM G S IE+G V+HEF +GD  HP    I+E+L+ +E  ++
Sbjct: 481 RWDDMARMRKLMDQRGVFKMAGKSSIEIGGVLHEFIAGDTSHPRKREIYEELRRIEGVIR 540

Query: 451 LAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHR 510
             GYVPD++  LH    E KE++  FHSE+LAIAFG+I  P GT +R+ KNLRVC DCH 
Sbjct: 541 ERGYVPDIKAVLHNAAREAKEKMCCFHSERLAIAFGMISSPGGTELRIMKNLRVCPDCHS 600

Query: 511 ATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           ATK IS    R+IIVRD  RFH F++G+CSC DYW
Sbjct: 601 ATKIISKFSGRKIIVRDANRFHEFRNGSCSCEDYW 635



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 80/171 (46%), Gaps = 1/171 (0%)

Query: 168 IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC 227
           + P+A  L+  L  C   +++  GK++H  +              L+ MY KCG L+ A 
Sbjct: 53  VSPSAEVLAWYLRRCGSEAAIAEGKRIHYHIVLCGFKSSRYLCNLLVEMYGKCGSLQAAK 112

Query: 228 KLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG 287
            +F    R++V +W  M++ +A +G    AL L + M  EG+ P+SITF+ LL A     
Sbjct: 113 SVFHITPRRNVFSWTIMVAAFAHNGHYMDALNLLEIMDLEGISPNSITFIELLGAVAALS 172

Query: 288 LVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 338
            +D G +     +   G  A      C++++  +   L +A  + + +  +
Sbjct: 173 WLDRG-RALHRRIACCGFLADIFVANCLINMYAKCRSLADACSVFESLTSR 222


>gi|224088870|ref|XP_002308572.1| predicted protein [Populus trichocarpa]
 gi|222854548|gb|EEE92095.1| predicted protein [Populus trichocarpa]
          Length = 433

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 190/439 (43%), Positives = 267/439 (60%), Gaps = 6/439 (1%)

Query: 107 MISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGL 166
           M++G+   GQ+    +LF   P + V++W  M+       YV N    + L+  + M   
Sbjct: 1   MLAGFARDGQVSVVQKLFDEMPERDVISWNTML-----MAYVHNGKLGEALECFKRMRES 55

Query: 167 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 226
           G+ P+ ++L ++L   + L  L+ G+ +H ++    L    +  T L+ MY KCG +E +
Sbjct: 56  GLVPDEATLVTMLSASAQLCLLEHGQSIHSIIDSLSLPMTISIGTALLDMYAKCGCIEQS 115

Query: 227 CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHA 286
             LF  + R+DV TWN MI G A HG G+ AL LF++  +EG+ P ++TFV +L AC+ A
Sbjct: 116 RLLFENMPRRDVSTWNVMICGLASHGLGKDALTLFERFLNEGLHPMNVTFVGVLNACSRA 175

Query: 287 GLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGT 346
           GLV  G  YF  M + YGI  + +HY CMVDLLGRAG + EA+ +I+ M   P P ++  
Sbjct: 176 GLVKEGRHYFQMMTDSYGIEPEMEHYGCMVDLLGRAGLVFEAIKVIESMAISPDPVLWAM 235

Query: 347 LLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENN 406
           +L ACR+H   +L E     L  L+P    G YVQLA+IYA  +KW+DV R+R  M E N
Sbjct: 236 VLCACRIHGLAELGEKIGNRLIELDP-TYDGHYVQLASIYANSRKWEDVVRVRRLMAERN 294

Query: 407 VVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVG 466
             K+ G+S IE    VH F +G R H + + I + L+ +E R+  AGYVP++   LH +G
Sbjct: 295 TSKVAGWSLIEARGKVHRFVAGHREHEQSLEIQKMLEIIETRLAAAGYVPNVSPVLHDIG 354

Query: 467 EEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVR 526
           EE KE  +  HSE+LAIAFGL+    G+ IR+ KNLRVC DCH  TK IS + +REIIVR
Sbjct: 355 EEEKENAIKVHSERLAIAFGLLVTGPGSCIRIVKNLRVCWDCHEVTKMISRVFEREIIVR 414

Query: 527 DTTRFHHFKDGTCSCGDYW 545
           D +RFHHFK+G CSC DYW
Sbjct: 415 DGSRFHHFKEGKCSCLDYW 433



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 72/290 (24%), Positives = 127/290 (43%), Gaps = 50/290 (17%)

Query: 12  VLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP----I 67
           +LAGFA+  G++   Q+LFD++P+ DV+S+N ML   + N   +  A + F+R+     +
Sbjct: 1   MLAGFARD-GQVSVVQKLFDEMPERDVISWNTMLMAYVHNG-KLGEALECFKRMRESGLV 58

Query: 68  KDTASWNTMISGFVQKKNMAKARDLF-----LAMPEKNSVSWSAMISGYIECGQLDKAVE 122
            D A+  TM+S   Q   +   + +      L++P   S+  +A++  Y +CG ++++  
Sbjct: 59  PDEATLVTMLSASAQLCLLEHGQSIHSIIDSLSLPMTISIG-TALLDMYAKCGCIEQSRL 117

Query: 123 LFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGC 182
           LF+  P + V  W  MI G    G       +D L L    +  G+ P   +   VL  C
Sbjct: 118 LFENMPRRDVSTWNVMICGLASHGL-----GKDALTLFERFLNEGLHPMNVTFVGVLNAC 172

Query: 183 SHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWN 242
           S    ++ G+   Q++       D+  + P +  Y    DL     L  E          
Sbjct: 173 SRAGLVKEGRHYFQMM------TDSYGIEPEMEHYGCMVDLLGRAGLVFE---------- 216

Query: 243 AMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 292
                         A+++ + M    + PD + +  +L AC   GL +LG
Sbjct: 217 --------------AIKVIESM---AISPDPVLWAMVLCACRIHGLAELG 249


>gi|115453719|ref|NP_001050460.1| Os03g0441400 [Oryza sativa Japonica Group]
 gi|108709057|gb|ABF96852.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113548931|dbj|BAF12374.1| Os03g0441400 [Oryza sativa Japonica Group]
 gi|215767379|dbj|BAG99607.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 837

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 205/542 (37%), Positives = 298/542 (54%), Gaps = 33/542 (6%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G +KDA+  F+ IP  DV+  + M+S     S+    AF+ F RL           +S  
Sbjct: 312 GDIKDARLAFEMIPYDDVILLSFMIS-RYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSV 370

Query: 81  VQK-KNMAK----------------ARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVEL 123
           +Q   NM +                  DLF+          +A++  Y +C  +D ++++
Sbjct: 371 LQACTNMVQLDFGKQIHNHAIKIGHESDLFVG---------NALMDFYAKCNDMDSSLKI 421

Query: 124 FKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCS 183
           F      + V+W  ++ G+ + G       E+ L +   M    +     + SSVL  C+
Sbjct: 422 FSSLRDANEVSWNTIVVGFSQSGL-----GEEALSVFCEMQAAQMPCTQVTYSSVLRACA 476

Query: 184 HLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNA 243
             +S++   Q+H  + KS    DT     LI  Y KCG + DA K+F  +  +D+++WNA
Sbjct: 477 STASIRHAGQIHCSIEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWNA 536

Query: 244 MISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDY 303
           +ISGYA HG+   AL LFD+M    ++ + ITFVALL  C+  GLV+ G+  FDSM  D+
Sbjct: 537 IISGYALHGQAADALELFDRMNKSNVESNDITFVALLSVCSSTGLVNHGLSLFDSMRIDH 596

Query: 304 GIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFA 363
           GI    +HYTC+V LLGRAG+L +A+  I  +P  P   ++  LLS+C +HK + L  F+
Sbjct: 597 GIKPSMEHYTCIVRLLGRAGRLNDALQFIGDIPSAPSAMVWRALLSSCIIHKNVALGRFS 656

Query: 364 AMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVH 423
           A  +  + P +    YV L+N+YAA    D VA +R SM+   V K+PG SW+E+   +H
Sbjct: 657 AEKILEIEPQDET-TYVLLSNMYAAAGSLDQVALLRKSMRNIGVRKVPGLSWVEIKGEIH 715

Query: 424 EFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAI 483
            F  G   HP++  I+  L+ L  +    GY+PD+   LH V +E K ++L  HSE+LA+
Sbjct: 716 AFSVGSVDHPDMRVINAMLEWLNLKTSREGYIPDINVVLHDVDKEQKTRMLWVHSERLAL 775

Query: 484 AFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGD 543
           A+GL+  P G PIR+ KNLR C DCH A   IS I KREIIVRD  RFHHF+DG CSCGD
Sbjct: 776 AYGLVMTPPGHPIRILKNLRSCLDCHTAFTVISKIVKREIIVRDINRFHHFEDGKCSCGD 835

Query: 544 YW 545
           YW
Sbjct: 836 YW 837



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 85/301 (28%), Positives = 137/301 (45%), Gaps = 20/301 (6%)

Query: 11  SVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDT 70
           +VL     + G L  A+ LFD++P+ ++VS+ + L        D  AA   F+RL  +  
Sbjct: 100 NVLLNMYGKLGPLASARRLFDRMPERNMVSF-VTLVQAHAQRGDFEAAAALFRRLRWEGH 158

Query: 71  ASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSW-----------SAMISGYIECGQLDK 119
                +++  ++   +A A D        +S +W           S +I  Y  C  +  
Sbjct: 159 EVNQFVLTTMLK---LAIAMDAAGLAGGVHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSD 215

Query: 120 AVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVL 179
           A  +F     K  V WTAM+S Y      EN   E+  ++   M   G +PN  +L+SVL
Sbjct: 216 AEHVFNGIVRKDAVVWTAMVSCYS-----ENDCPENAFRVFSKMRVSGCKPNPFALTSVL 270

Query: 180 LGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVV 239
                L S+ LGK +H    K+    +      L+ MY KCGD++DA   F  I   DV+
Sbjct: 271 KAAVCLPSVVLGKGIHGCAIKTLNDTEPHVGGALLDMYAKCGDIKDARLAFEMIPYDDVI 330

Query: 240 TWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSM 299
             + MIS YAQ  + E+A  LF ++    + P+  +  ++L AC +   +D G Q  +  
Sbjct: 331 LLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACTNMVQLDFGKQIHNHA 390

Query: 300 V 300
           +
Sbjct: 391 I 391



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 62/276 (22%), Positives = 118/276 (42%), Gaps = 18/276 (6%)

Query: 7   VNWNSVLAGFAKQRGKLKDAQELF-----DKIPQPDVVSYNIMLSCILLNSDDVVAAF-- 59
           V+WN+++ GF+ Q G  ++A  +F      ++P   V   +++ +C    S         
Sbjct: 431 VSWNTIVVGFS-QSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASIRHAGQIHC 489

Query: 60  DFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDK 119
              +     DT   N++I  + +   +  A  +F  + E++ +SW+A+ISGY   GQ   
Sbjct: 490 SIEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWNAIISGYALHGQAAD 549

Query: 120 AVELFKVAPVKSV----VAWTAMISGYMKFGYVENSWAEDGLKLL-RMMIGLGIRPNASS 174
           A+ELF      +V    + + A++S     G V +     GL L   M I  GI+P+   
Sbjct: 550 ALELFDRMNKSNVESNDITFVALLSVCSSTGLVNH-----GLSLFDSMRIDHGIKPSMEH 604

Query: 175 LSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ 234
            + ++        L    Q    +  +P      AL     ++        + +  LEI+
Sbjct: 605 YTCIVRLLGRAGRLNDALQFIGDIPSAPSAMVWRALLSSCIIHKNVALGRFSAEKILEIE 664

Query: 235 RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMK 270
            +D  T+  + + YA  G  ++   L   M++ G++
Sbjct: 665 PQDETTYVLLSNMYAAAGSLDQVALLRKSMRNIGVR 700


>gi|357111099|ref|XP_003557352.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 685

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 208/578 (35%), Positives = 307/578 (53%), Gaps = 86/578 (14%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
           N+VL  +AK  G  +  +  F  + + D VS+NI++S  + N D ++ +   F   P++D
Sbjct: 152 NAVLDMYAKC-GDYECTKRAFKAMTKIDAVSWNIVISACMQNGD-ILGSMQLFDVSPLRD 209

Query: 70  TASWNTMISGFVQKKNMAKARDLFLAMP-------------------------------- 97
           T+SWNT+ISG ++    AKA D    M                                 
Sbjct: 210 TSSWNTVISGLMRNGCAAKALDCLYRMARARVVFNHYTYSTALALAGMLSLQDLGRQLHG 269

Query: 98  -------EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKS---VVAWTAMISGYMKFGY 147
                  + ++   S+++  Y +CG ++ AV +F      +     AW+AM++GY     
Sbjct: 270 RVLTAAVDTDAFVRSSLMDMYCKCGSMETAVLIFDSWSQLTGDMNFAWSAMVAGY----- 324

Query: 148 VENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDT 207
           V+N   E+  +  R M+  G+  +  +L+S +  C++   ++ G+     +F        
Sbjct: 325 VQNGREEEAFEFFRSMLREGVAAHQFTLTSAIAACANAGMVEQGR-----IF-------- 371

Query: 208 TALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE 267
                           + AC        K+V  W +M+  YA HGKG  A+ LF++M  E
Sbjct: 372 ----------------DRACA-------KNVALWTSMLCSYASHGKGRMAIELFNRMTAE 408

Query: 268 GMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVE 327
            + P+ IT V +L AC+H  LV+ G  +F  M ++YGI    +HY CMVDL GRAG L +
Sbjct: 409 KITPNEITLVGVLSACSHGRLVNEGDHFFKLMQDEYGIVPSIEHYNCMVDLYGRAGMLYK 468

Query: 328 AVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYA 387
           A + IK+   K +  ++ TLLSACR+HK ++ A+ A+ NL  L   +A G YV L+N+YA
Sbjct: 469 AHNFIKENNIKHEAIVWKTLLSACRLHKHMEYAKLASENLIQLEECDA-GSYVMLSNVYA 527

Query: 388 AMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEK 447
              KW D +++R SM+E  V K PG SWI +  ++H F +GD  HP    I+  L++L +
Sbjct: 528 THSKWLDTSKLRSSMRERRVWKQPGRSWIHLKNIMHTFVAGDTAHPRSAEIYAYLEKLME 587

Query: 448 RMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGD 507
           R+K  GY    +   H V EE +E  L FHSEKLAIAFG+I  P GTP+R+FKNLRVC D
Sbjct: 588 RLKDLGYTSRTDLVAHDVEEEQRETALKFHSEKLAIAFGIISTPSGTPLRIFKNLRVCVD 647

Query: 508 CHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           CH A KY+S    REI+VRD  RFHHFKD  CSC D+W
Sbjct: 648 CHEAIKYVSQATDREIVVRDLYRFHHFKDAKCSCEDFW 685



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 94/369 (25%), Positives = 164/369 (44%), Gaps = 29/369 (7%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKI-----PQPDVVSYNIMLSCIL----LNSDD 54
           ++   W + +AG A+  G+  D    F ++      +P+      +L C      + S  
Sbjct: 75  RSASAWTAFIAGCARS-GRHMDGLSAFTEMRAKGGAEPNAFVLAAVLRCCAGLRDMESGK 133

Query: 55  VVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIEC 114
            +  +   +     D    N ++  + +  +    +  F AM + ++VSW+ +IS  ++ 
Sbjct: 134 CIHGW-MLRNGAHLDVVLCNAVLDMYAKCGDYECTKRAFKAMTKIDAVSWNIVISACMQN 192

Query: 115 GQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASS 174
           G +  +++LF V+P++   +W  +ISG M+     N  A   L  L  M    +  N  +
Sbjct: 193 GDILGSMQLFDVSPLRDTSSWNTVISGLMR-----NGCAAKALDCLYRMARARVVFNHYT 247

Query: 175 LSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF---L 231
            S+ L     LS   LG+Q+H  V  + +  D    + L+ MYCKCG +E A  +F    
Sbjct: 248 YSTALALAGMLSLQDLGRQLHGRVLTAAVDTDAFVRSSLMDMYCKCGSMETAVLIFDSWS 307

Query: 232 EIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDL 291
           ++       W+AM++GY Q+G+ E+A   F  M  EG+     T  + + AC +AG+V+ 
Sbjct: 308 QLTGDMNFAWSAMVAGYVQNGREEEAFEFFRSMLREGVAAHQFTLTSAIAACANAGMVEQ 367

Query: 292 GIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP---FKPQPAIFGTLL 348
           G       + D   A     +T M+      GK   A++L  +M      P       +L
Sbjct: 368 G------RIFDRACAKNVALWTSMLCSYASHGKGRMAIELFNRMTAEKITPNEITLVGVL 421

Query: 349 SACRVHKRL 357
           SAC  H RL
Sbjct: 422 SACS-HGRL 429



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/182 (30%), Positives = 86/182 (47%), Gaps = 10/182 (5%)

Query: 86  MAKARDLFLAMPEKNSVSWSA-MISGYIEC---GQLDKAVELFKVAPVKSVVAWTAMISG 141
           + +++ L  + PEK     S  ++S  I C        A +L    P +S  AWTA I+G
Sbjct: 27  LQRSQSLCASAPEKGLARISQEIVSLPISCVRGHHFHNARKLLDETPKRSASAWTAFIAG 86

Query: 142 YMKFGYVENSWAEDGLK-LLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK 200
             + G        DGL     M    G  PNA  L++VL  C+ L  ++ GK +H  + +
Sbjct: 87  CARSGR-----HMDGLSAFTEMRAKGGAEPNAFVLAAVLRCCAGLRDMESGKCIHGWMLR 141

Query: 201 SPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRL 260
           +    D      ++ MY KCGD E   + F  + + D V+WN +IS   Q+G    +++L
Sbjct: 142 NGAHLDVVLCNAVLDMYAKCGDYECTKRAFKAMTKIDAVSWNIVISACMQNGDILGSMQL 201

Query: 261 FD 262
           FD
Sbjct: 202 FD 203


>gi|326497745|dbj|BAK05962.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 742

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 212/552 (38%), Positives = 320/552 (57%), Gaps = 17/552 (3%)

Query: 3   VKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQ----PDVVSYNIMLS-CILLNSDDVVA 57
           V+  V W  +++G+++  G+  +A + F+ +      PD V+   MLS C  L   +   
Sbjct: 199 VRNVVTWTGLISGYSRA-GRAAEAVDCFNSMLSDGIAPDEVTVIGMLSACGQLKDLNFGC 257

Query: 58  AFDFF---QRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPE-KNSVSWSAMISGYIE 113
           +       +R+ + D      +I  + +  +  +AR++F A+   +    W+AMI GY +
Sbjct: 258 SLHMLVGDKRMLMSDKLV-VALIDMYAKCGDTGRAREVFDALGRGRGPQPWNAMIDGYCK 316

Query: 114 CGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNAS 173
            G +D A  LF       V+ + ++I+GY+  G +      + L L   M   G+  +  
Sbjct: 317 VGHVDIARSLFDQMEDHDVITFNSLITGYIHGGRLR-----EALLLFTKMRRHGLGADNF 371

Query: 174 SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI 233
           ++  +L   + L +L  G+ +H  + +  + +D    T L+ MY KCG +E+A   F ++
Sbjct: 372 TMVGLLTASASLGALPQGRALHACIEQRLVERDVYLGTALLDMYMKCGRVEEAMVAFKQM 431

Query: 234 QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGI 293
             +DV TW+AMI G A +G G+ AL  F  MK +G   +S+T++A+L AC+H+ L+D G 
Sbjct: 432 SVRDVHTWSAMIGGLAFNGMGKAALEHFFWMKCDGFHANSVTYIAVLTACSHSCLLDEGR 491

Query: 294 QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRV 353
            YFD M   + I  + +HY CM+DLLGR+G L EA+DL++ MP +P   I+ ++LSACRV
Sbjct: 492 LYFDEMRLLHNIRPQIEHYGCMIDLLGRSGLLDEAMDLVQTMPMQPNAVIWASILSACRV 551

Query: 354 HKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGY 413
           HK +DLA+ AA +L  L PA  A  YVQ+ NIY   ++W+D ++IR  M++  V K  GY
Sbjct: 552 HKNVDLAQNAAHHLLKLEPAEDA-VYVQMYNIYIDSRQWEDASKIRRLMEKRGVKKTAGY 610

Query: 414 SWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQL 473
           S I V   VH+F  GDR HP++  I   ++E+ +R+K AGY P        V EE KEQ 
Sbjct: 611 SSIAVAGQVHKFIVGDRSHPQIAEIVVMMEEIGRRLKSAGYSPITSQITVDVDEEEKEQA 670

Query: 474 LLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHH 533
           LL HSEKLAIAFGL+ +    P+ + KNLRVC DCH A K IS +  REIIVRD +RFHH
Sbjct: 671 LLAHSEKLAIAFGLVSLAPNLPVHIIKNLRVCEDCHSAIKLISRLWNREIIVRDRSRFHH 730

Query: 534 FKDGTCSCGDYW 545
           F+ G CSC D+W
Sbjct: 731 FRGGVCSCNDFW 742



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 91/296 (30%), Positives = 136/296 (45%), Gaps = 19/296 (6%)

Query: 36  PDVVSYNIMLSCILLNSDDVV-----AAFDFFQRLPIKDTASWNTMISGFVQKKNMAKAR 90
           PD  +++ +  C       V+      A  F   LP       + +I  + +      AR
Sbjct: 101 PDAFTFHFLFKCCARGGAHVLLGRMLHAACFRTLLPSAVPLIASPIIHMYAELGLPGDAR 160

Query: 91  DLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVEN 150
             F     K+ V+W+ +ISG  + G LD A  L   APV++VV WT +ISGY + G    
Sbjct: 161 RAFDEASVKDVVAWTTVISGLAKMGLLDDARRLLARAPVRNVVTWTGLISGYSRAGR--- 217

Query: 151 SWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTAL 210
             A + +     M+  GI P+  ++  +L  C  L  L  G  +H LV    +      +
Sbjct: 218 --AAEAVDCFNSMLSDGIAPDEVTVIGMLSACGQLKDLNFGCSLHMLVGDKRMLMSDKLV 275

Query: 211 TPLISMYCKCGDLEDACKLFLEIQR-KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGM 269
             LI MY KCGD   A ++F  + R +    WNAMI GY + G  + A  LFD+M+D   
Sbjct: 276 VALIDMYAKCGDTGRAREVFDALGRGRGPQPWNAMIDGYCKVGHVDIARSLFDQMEDH-- 333

Query: 270 KPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKL 325
             D ITF +L+    H G +   +  F  M   +G+ A  D++T MV LL  +  L
Sbjct: 334 --DVITFNSLITGYIHGGRLREALLLFTKM-RRHGLGA--DNFT-MVGLLTASASL 383


>gi|359482590|ref|XP_002284545.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 648

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 203/530 (38%), Positives = 301/530 (56%), Gaps = 14/530 (2%)

Query: 23  LKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP---IKDTASWNTMISG 79
           L  A+ LFD+IP+ ++  +N+++     N     A   ++Q      + D  ++  ++  
Sbjct: 126 LSSARLLFDRIPKHNIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKA 185

Query: 80  FVQKKNMAKARDLFLAMP----EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAW 135
                 +   R++   +     EK+    +A+I  Y +CG +  A E+F    V+  V W
Sbjct: 186 CAALSAIEHGREIHEHVVQTGWEKDVFVGAALIDMYAKCGCVGSAREVFDKILVRDAVLW 245

Query: 136 TAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVH 195
            +M++ Y + G+ +       L L   M+  G+RP  ++L + +   +  ++L  G+++H
Sbjct: 246 NSMLAAYSQNGHPDAC-----LSLCSEMVLTGLRPTEATLVTAISASADNAALPQGRELH 300

Query: 196 QLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGE 255
            L ++          T L+ MY KCG +  A  LF  +  K VV+WNAMI+GYA HG   
Sbjct: 301 GLSWRQEFESHDKVKTALVDMYAKCGSVRVARNLFERLGVKRVVSWNAMITGYAMHGHAT 360

Query: 256 KALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCM 315
           +AL LF++M +   KPD ITFV +L AC+H GL++ G  +F++M+ DY I     HYTCM
Sbjct: 361 EALDLFEEM-NRVAKPDHITFVGVLSACSHGGLLEEGWMFFETMIRDYKIDPTVQHYTCM 419

Query: 316 VDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANA 375
           VDLLG +G+L EA +LI +M   P   ++G LL++C++H  ++L E A   L  L P +A
Sbjct: 420 VDLLGHSGRLDEAYNLIMQMKVLPDSGVWGALLNSCKIHANVELGEIALERLIELEPDDA 479

Query: 376 AGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPEL 435
            G YV L+NIYA   KW+ VA++R  M +  + K    SWIEV   VH F SGD  HP  
Sbjct: 480 -GNYVILSNIYAQAGKWEGVAKLRKLMTDRRLKKSIACSWIEVKNKVHAFLSGDTSHPLS 538

Query: 436 VSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTP 495
             I+ +L+ +   MK AGY P      H V ++ K  ++  HSE+LAIAFGLI  P GT 
Sbjct: 539 DEIYSELERVGGLMKEAGYSPSTGSVFHDVEDDEKANMVCSHSERLAIAFGLISTPPGTR 598

Query: 496 IRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           + + KNLR+C DCH A K+IS I +REI VRD  R+HHFKDG CSCGDYW
Sbjct: 599 LLITKNLRICEDCHVAIKFISKITEREITVRDVNRYHHFKDGVCSCGDYW 648



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 63/245 (25%), Positives = 117/245 (47%), Gaps = 18/245 (7%)

Query: 100 NSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKL 159
           ++V  + +++ Y  C  L  A  LF   P  ++  W  +I      GY  N   E  ++L
Sbjct: 109 DTVIATKLVNLYCVCDSLSSARLLFDRIPKHNIFLWNVLIR-----GYAWNGPYEAAVQL 163

Query: 160 LRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCK 219
              M   G+ P+  +   VL  C+ LS+++ G+++H+ V ++   KD      LI MY K
Sbjct: 164 YYQMFDYGLVPDNFTFPFVLKACAALSAIEHGREIHEHVVQTGWEKDVFVGAALIDMYAK 223

Query: 220 CGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVAL 279
           CG +  A ++F +I  +D V WN+M++ Y+Q+G  +  L L  +M   G++P   T V  
Sbjct: 224 CGCVGSAREVFDKILVRDAVLWNSMLAAYSQNGHPDACLSLCSEMVLTGLRPTEATLVTA 283

Query: 280 LLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY------TCMVDLLGRAGKLVEAVDLIK 333
           + A      +  G +        +G++ + +        T +VD+  + G +  A +L +
Sbjct: 284 ISASADNAALPQGREL-------HGLSWRQEFESHDKVKTALVDMYAKCGSVRVARNLFE 336

Query: 334 KMPFK 338
           ++  K
Sbjct: 337 RLGVK 341



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 73/281 (25%), Positives = 129/281 (45%), Gaps = 34/281 (12%)

Query: 168 IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC 227
           + P  S+ +S+L  C    +++ GKQ+H  V  +    DT   T L+++YC C  L  A 
Sbjct: 71  LTPTYSNYASLLQSCIARKAIKPGKQLHAQVCLAGFGFDTVIATKLVNLYCVCDSLSSAR 130

Query: 228 KLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG 287
            LF  I + ++  WN +I GYA +G  E A++L+ +M D G+ PD+ TF  +L AC    
Sbjct: 131 LLFDRIPKHNIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKACAALS 190

Query: 288 LVDLGIQYFDSMVN-----DYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPA 342
            ++ G +  + +V      D  + A       ++D+  + G +  A ++  K+  +    
Sbjct: 191 AIEHGREIHEHVVQTGWEKDVFVGAA------LIDMYAKCGCVGSAREVFDKILVR-DAV 243

Query: 343 IFGTLLSACRVHKRLD--LAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRL 400
           ++ ++L+A   +   D  L+  + M L  L P          A +  A+    D A +  
Sbjct: 244 LWNSMLAAYSQNGHPDACLSLCSEMVLTGLRPTE--------ATLVTAISASADNAALPQ 295

Query: 401 SMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEK 441
                   ++ G SW +      EF S D+V   LV ++ K
Sbjct: 296 GR------ELHGLSWRQ------EFESHDKVKTALVDMYAK 324



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 71/275 (25%), Positives = 117/275 (42%), Gaps = 47/275 (17%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIML----------SCILLNSDDVVAAFDFFQRLPIKDT 70
           G +  A+E+FDKI   D V +N ML          +C+ L S+ V+              
Sbjct: 225 GCVGSAREVFDKILVRDAVLWNSMLAAYSQNGHPDACLSLCSEMVLTGLR-------PTE 277

Query: 71  ASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSW-----------SAMISGYIECGQLDK 119
           A+  T IS       + + R+L       + +SW           +A++  Y +CG +  
Sbjct: 278 ATLVTAISASADNAALPQGREL-------HGLSWRQEFESHDKVKTALVDMYAKCGSVRV 330

Query: 120 AVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVL 179
           A  LF+   VK VV+W AMI+GY   G+     A + L L   M  +  +P+  +   VL
Sbjct: 331 ARNLFERLGVKRVVSWNAMITGYAMHGH-----ATEALDLFEEMNRVA-KPDHITFVGVL 384

Query: 180 LGCSHLSSLQLGKQVHQLVFKSPLCKDTTA-LTPLISMYCKCGDLEDACKLFLEIQ-RKD 237
             CSH   L+ G    + + +      T    T ++ +    G L++A  L ++++   D
Sbjct: 385 SACSHGGLLEEGWMFFETMIRDYKIDPTVQHYTCMVDLLGHSGRLDEAYNLIMQMKVLPD 444

Query: 238 VVTWNAMISGYAQHGK---GEKAL-RLFDKMKDEG 268
              W A+++    H     GE AL RL +   D+ 
Sbjct: 445 SGVWGALLNSCKIHANVELGEIALERLIELEPDDA 479


>gi|357123666|ref|XP_003563529.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Brachypodium distachyon]
          Length = 742

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 213/556 (38%), Positives = 321/556 (57%), Gaps = 27/556 (4%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKI----PQPDVVSYNIMLSCILLNSDDVVAAF 59
           +  ++W  +++G+++  G+  +A + F+ +     +PD V+   +LS      D V    
Sbjct: 200 RNVISWTGLISGYSRA-GRAAEAVDCFNSMLSDGIEPDEVTVIGLLSACAQLKDLV---- 254

Query: 60  DFFQRLPIKDTASWNTMISG---------FVQKKNMAKARDLFLAMPE-KNSVSWSAMIS 109
             F R   K       ++SG         + +  ++ +A ++F A+   +   SW+AMI 
Sbjct: 255 --FGRSLHKLVGEKGMLMSGKLVVALIDMYAKCGDIGRAWEVFDALGRGRRPQSWNAMID 312

Query: 110 GYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIR 169
           GY + G +D A  LF     + +V + ++I+GY+  G +      + L L   M    +R
Sbjct: 313 GYCKLGHVDVARYLFDQMEDRDLVTFNSLITGYIHGGRLR-----EALLLFMQMRRHDLR 367

Query: 170 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 229
            +  ++ S+L  C+ L +L  G+ +H  + +  +  D    T L+ MY KCG +E+A  +
Sbjct: 368 ADNFTMVSLLTACASLGALPQGRALHACIEQRLVEVDIYLGTALLDMYLKCGRVEEASLV 427

Query: 230 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLV 289
           F  +  +DV TW+AMI+G A +G G+ AL  F  MK +G +P+S+T++A+L AC+H+ L+
Sbjct: 428 FQAMSVRDVHTWSAMIAGLAFNGMGKAALEYFFWMKVDGFQPNSVTYIAILTACSHSCLL 487

Query: 290 DLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLS 349
           D G  YF+ M   + I    +HY CM+DLLGR+G L EA+DL++ MP +P   I+ ++LS
Sbjct: 488 DEGRLYFEEMRLLHNIRPLIEHYGCMIDLLGRSGLLDEAMDLVRTMPMQPNAVIWASILS 547

Query: 350 ACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVK 409
           ACRVHK  +LA  AA +L  L P   A  YVQL NIY   ++W+D ++IR  M+E  V K
Sbjct: 548 ACRVHKDANLARNAAEHLLKLEPDEDA-VYVQLYNIYIDSRQWEDASQIRRLMEERGVKK 606

Query: 410 MPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEV 469
             GYS I V   VH+F   DR HP+++ I   ++E+ +R+K  GY P        V EE 
Sbjct: 607 AAGYSSITVAGQVHKFIVCDRTHPQIMEITAMMEEITRRLKSVGYSPITSQITVDVDEEE 666

Query: 470 KEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTT 529
           KE  LL HSEK+AIAFGLI +    P+ + KNLRVC DCH A K IS I  REIIVRD +
Sbjct: 667 KEHALLAHSEKIAIAFGLISLAPNLPLHIIKNLRVCEDCHSAIKLISRIWNREIIVRDRS 726

Query: 530 RFHHFKDGTCSCGDYW 545
           RFHHF+DGTCSC D+W
Sbjct: 727 RFHHFRDGTCSCNDFW 742



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 79/159 (49%), Gaps = 3/159 (1%)

Query: 205 KDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKM 264
           KD  A T +IS   K G L+DA  L      ++V++W  +ISGY++ G+  +A+  F+ M
Sbjct: 169 KDAVAWTTVISGLAKLGLLDDAWCLLRHSPARNVISWTGLISGYSRAGRAAEAVDCFNSM 228

Query: 265 KDEGMKPDSITFVALLLACNHAGLVDLGI-QYFDSMVNDYGIAAKPDHYTCMVDLLGRAG 323
             +G++PD +T + LL AC  A L DL   +    +V + G+         ++D+  + G
Sbjct: 229 LSDGIEPDEVTVIGLLSAC--AQLKDLVFGRSLHKLVGEKGMLMSGKLVVALIDMYAKCG 286

Query: 324 KLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEF 362
            +  A ++   +    +P  +  ++        +D+A +
Sbjct: 287 DIGRAWEVFDALGRGRRPQSWNAMIDGYCKLGHVDVARY 325


>gi|302805647|ref|XP_002984574.1| hypothetical protein SELMODRAFT_120669 [Selaginella moellendorffii]
 gi|300147556|gb|EFJ14219.1| hypothetical protein SELMODRAFT_120669 [Selaginella moellendorffii]
          Length = 369

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 186/368 (50%), Positives = 242/368 (65%), Gaps = 1/368 (0%)

Query: 178 VLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKD 237
           VL  C+ L++L+ GK+VH +     +  +    T ++ MY KCG L++A + F  I+R D
Sbjct: 3   VLDACASLAALRDGKRVHAIARDHGVDSEVAVATAIVDMYSKCGCLDEAVEAFARIERHD 62

Query: 238 VVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFD 297
            V+W AM++ +AQHG  ++AL  F +M+++G KP+ +TFV LL AC+H GLV+ G +YFD
Sbjct: 63  TVSWTAMLAAFAQHGHIDRALATFQRMQEQGHKPNYVTFVHLLSACSHKGLVEEGRKYFD 122

Query: 298 SMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRL 357
            M   YGIA    HY CMVDLLGRAG L EA   + +MP  P  A+  +LLSACR +K +
Sbjct: 123 LMTARYGIAPDAQHYACMVDLLGRAGYLDEAEGFLNRMPGAPHAAVLKSLLSACRSYKDV 182

Query: 358 DLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIE 417
           D  E  A  +   +  + +  YV LA+IY A  KW++ ARIR  M E  V K PG S IE
Sbjct: 183 DRGERIAKRMLE-SFWDESMPYVVLASIYRAAGKWEEAARIRSLMVERGVRKDPGRSAIE 241

Query: 418 VGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFH 477
           V   V EF +GD  H ++  I  KL+EL   MK AGYVPD    LH V EE KEQ+LL+H
Sbjct: 242 VEGRVFEFVAGDMSHVQMNPIRAKLQELSSAMKKAGYVPDTSLVLHDVAEEEKEQVLLWH 301

Query: 478 SEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDG 537
           SEKLA+AFGL+  P G+PIRV KNLRVC DCH A K ISAIE+R I+ RD +RFHHF++G
Sbjct: 302 SEKLAVAFGLLNTPAGSPIRVIKNLRVCKDCHDAAKLISAIEQRRIVFRDLSRFHHFENG 361

Query: 538 TCSCGDYW 545
            CSCGDYW
Sbjct: 362 VCSCGDYW 369



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/204 (21%), Positives = 88/204 (43%), Gaps = 41/204 (20%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI 164
           +A++  Y +CG LD+AVE F        V+WTAM++ + + G+++ +     L   + M 
Sbjct: 36  TAIVDMYSKCGCLDEAVEAFARIERHDTVSWTAMLAAFAQHGHIDRA-----LATFQRMQ 90

Query: 165 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVF-KSPLCKDTTALTPLISMYCKCGDL 223
             G +PN  +   +L  CSH   ++ G++   L+  +  +  D      ++ +  + G L
Sbjct: 91  EQGHKPNYVTFVHLLSACSHKGLVEEGRKYFDLMTARYGIAPDAQHYACMVDLLGRAGYL 150

Query: 224 ED----------------------ACKLFLEIQRKDVVT-------WN------AMISGY 248
           ++                      AC+ + ++ R + +        W+       + S Y
Sbjct: 151 DEAEGFLNRMPGAPHAAVLKSLLSACRSYKDVDRGERIAKRMLESFWDESMPYVVLASIY 210

Query: 249 AQHGKGEKALRLFDKMKDEGMKPD 272
              GK E+A R+   M + G++ D
Sbjct: 211 RAAGKWEEAARIRSLMVERGVRKD 234



 Score = 48.5 bits (114), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 40/181 (22%), Positives = 81/181 (44%), Gaps = 18/181 (9%)

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISGYIE 113
           A + F R+   DT SW  M++ F Q  ++ +A   F  M E+    N V++  ++S    
Sbjct: 51  AVEAFARIERHDTVSWTAMLAAFAQHGHIDRALATFQRMQEQGHKPNYVTFVHLLSACSH 110

Query: 114 CGQLDKAVELFKVAPVKSVVA-----WTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGI 168
            G +++  + F +   +  +A     +  M+    + GY++ +        L  M G   
Sbjct: 111 KGLVEEGRKYFDLMTARYGIAPDAQHYACMVDLLGRAGYLDEAEG-----FLNRMPGA-- 163

Query: 169 RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK 228
            P+A+ L S+L  C     +  G+++ + + +S    ++     L S+Y   G  E+A +
Sbjct: 164 -PHAAVLKSLLSACRSYKDVDRGERIAKRMLES-FWDESMPYVVLASIYRAAGKWEEAAR 221

Query: 229 L 229
           +
Sbjct: 222 I 222


>gi|449479821|ref|XP_004155717.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 745

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 212/552 (38%), Positives = 307/552 (55%), Gaps = 39/552 (7%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQ 63
           K  V+  + L     + G L  AQ LFD++ +  VVS+ +M++  + +      A +F +
Sbjct: 223 KMEVSMTTALIDMYCKGGCLASAQRLFDRLSKRSVVSWTVMIAGCIRSCRLDEGAKNFNR 282

Query: 64  RLPIKDTASWNTMIS-----GFVQKKNMAKARDLFLAMPEKNSVSWS-----AMISGYIE 113
            L  K   +  T++S     GFV   ++ K    F A   +N    S     A+I  Y +
Sbjct: 283 MLEEKLFPNEITLLSLITECGFVGTLDLGK---WFHAYLLRNGFGMSLALVTALIDMYGK 339

Query: 114 CGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNAS 173
           CGQ+  A  LF     K V  W+ +IS Y        S  +    L   M+   ++PN  
Sbjct: 340 CGQVGYARALFNGVKKKDVKIWSVLISAYAHV-----SCMDQVFNLFVEMLNNDVKPNNV 394

Query: 174 SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI 233
           ++ S+L  C+   +L LGK  H  + +  L  D    T LI+MY KCGD+  A  LF E 
Sbjct: 395 TMVSLLSLCAEAGALDLGKWTHAYINRHGLEVDVILETALINMYAKCGDVTIARSLFNEA 454

Query: 234 QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGI 293
            ++D+  WN M++G++ HG G++AL LF +M+  G++P+ ITFV++  AC+H+GL++   
Sbjct: 455 MQRDIRMWNTMMAGFSMHGCGKEALELFSEMESHGVEPNDITFVSIFHACSHSGLME--- 511

Query: 294 QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRV 353
                            HY C+VDLLGRAG L EA ++I+ MP +P   I+G LL+AC++
Sbjct: 512 -----------------HYGCLVDLLGRAGHLDEAHNIIENMPMRPNTIIWGALLAACKL 554

Query: 354 HKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGY 413
           HK L L E AA  +  L+P N  G  V  +NIYA+ K+W+DV  +R +M  + + K PG 
Sbjct: 555 HKNLALGEVAARKILELDPQNC-GYSVLKSNIYASAKRWNDVTSVREAMSHSGMKKEPGL 613

Query: 414 SWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQL 473
           SWIEV   VH F+SGD+   +   ++E + E+  +++ +GY P+    L  + EE KE  
Sbjct: 614 SWIEVSGSVHHFKSGDKACTQTTKVYEMVTEMCIKLRESGYTPNTAAVLLNIDEEEKESA 673

Query: 474 LLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHH 533
           L +HSEKLA AFGLI    GTPIR+ KNLR+C DCH ATK +S I  R IIVRD  RFHH
Sbjct: 674 LSYHSEKLATAFGLISTAPGTPIRIVKNLRICDDCHAATKLLSKIYGRTIIVRDRNRFHH 733

Query: 534 FKDGTCSCGDYW 545
           F +G CSC  YW
Sbjct: 734 FSEGYCSCMGYW 745



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 88/330 (26%), Positives = 164/330 (49%), Gaps = 37/330 (11%)

Query: 31  DKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNT-----MISGFVQKKN 85
           + +PQ    S+N  L    + S+D  A  +F     +K  A  ++      + GF QK  
Sbjct: 65  NHLPQ---ASFNCYLH---MRSNDAAALDNFILPSLLKACAQASSGDLGRELHGFAQKNG 118

Query: 86  MAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMK- 144
            A   D+F+          +A+++ Y +CG L  A  +F   P + VV+WT M+  Y++ 
Sbjct: 119 FAS--DVFVC---------NALMNMYEKCGCLVSARLVFDQMPERDVVSWTTMLGCYVRS 167

Query: 145 --FGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSP 202
             FG        + L+L+R M  +G++ +  +L S++    +L  ++ G+ VH  + ++ 
Sbjct: 168 KAFG--------EALRLVREMQFVGVKLSGVALISLIAVFGNLLDMKSGRAVHGYIVRNV 219

Query: 203 LCK--DTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRL 260
             +  + +  T LI MYCK G L  A +LF  + ++ VV+W  MI+G  +  + ++  + 
Sbjct: 220 GDEKMEVSMTTALIDMYCKGGCLASAQRLFDRLSKRSVVSWTVMIAGCIRSCRLDEGAKN 279

Query: 261 FDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLG 320
           F++M +E + P+ IT ++L+  C   G +DLG ++F + +   G        T ++D+ G
Sbjct: 280 FNRMLEEKLFPNEITLLSLITECGFVGTLDLG-KWFHAYLLRNGFGMSLALVTALIDMYG 338

Query: 321 RAGKLVEAVDLIKKMPFKPQPAIFGTLLSA 350
           + G++  A  L   +  K    I+  L+SA
Sbjct: 339 KCGQVGYARALFNGVK-KKDVKIWSVLISA 367



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 88/187 (47%), Gaps = 6/187 (3%)

Query: 175 LSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ 234
           L S+L  C+  SS  LG+++H    K+    D      L++MY KCG L  A  +F ++ 
Sbjct: 91  LPSLLKACAQASSGDLGRELHGFAQKNGFASDVFVCNALMNMYEKCGCLVSARLVFDQMP 150

Query: 235 RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDL--G 292
            +DVV+W  M+  Y +     +ALRL  +M+  G+K   +  ++L+       L+D+  G
Sbjct: 151 ERDVVSWTTMLGCYVRSKAFGEALRLVREMQFVGVKLSGVALISLIAV--FGNLLDMKSG 208

Query: 293 IQYFDSMVNDYGIAA-KPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSAC 351
                 +V + G    +    T ++D+  + G L  A  L  ++  K     +  +++ C
Sbjct: 209 RAVHGYIVRNVGDEKMEVSMTTALIDMYCKGGCLASAQRLFDRLS-KRSVVSWTVMIAGC 267

Query: 352 RVHKRLD 358
               RLD
Sbjct: 268 IRSCRLD 274


>gi|359496846|ref|XP_002272372.2| PREDICTED: uncharacterized protein LOC100258406 [Vitis vinifera]
          Length = 1286

 Score =  374 bits (959), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 207/525 (39%), Positives = 305/525 (58%), Gaps = 14/525 (2%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRL-----PIKDTASWNT 75
           G L DA+ +FD++P  D+V++  +++    N+    A   F Q L     P   T S   
Sbjct: 137 GCLDDARRMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGFQPNHFTLSSLL 196

Query: 76  MISGFVQKKNMAKARDLF-LAMPEKNSVS-WSAMISGYIECGQLDKAVELFKVAPVKSVV 133
             SG     +       F L    ++SV   SA++  Y  CG +D A   F   P KS V
Sbjct: 197 KASGSEHGLDPGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEV 256

Query: 134 AWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ 193
           +W A+ISG+ + G       E  L LL  M     +P   + SSVL  C+ + +L+ GK 
Sbjct: 257 SWNALISGHARKGE-----GEHALHLLWKMQRKNFQPTHFTYSSVLSACASIGALEQGKW 311

Query: 194 VHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGK 253
           VH  + KS L         L+ MY K G ++DA ++F  + + DVV+WN M++G AQHG 
Sbjct: 312 VHAHMIKSGLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGL 371

Query: 254 GEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYT 313
           G++ L  F++M   G++P+ I+F+ +L AC+H+GL+D G+ YF+ ++  Y +     HY 
Sbjct: 372 GKETLDRFEQMLRIGIEPNEISFLCVLTACSHSGLLDEGLYYFE-LMKKYKVEPDVPHYV 430

Query: 314 CMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPA 373
             VDLLGR G L  A   I++MP +P  A++G LL ACR+HK ++L  +AA   F L+P 
Sbjct: 431 TFVDLLGRVGLLDRAERFIREMPIEPTAAVWGALLGACRMHKNMELGVYAAERAFELDPH 490

Query: 374 NAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHP 433
           ++ G  + L+NIYA+  +W DVA++R  MKE+ V K P  SW+E+   VH F + D  HP
Sbjct: 491 DS-GPRMLLSNIYASAGRWRDVAKVRKMMKESGVKKQPACSWVEIENAVHLFVANDETHP 549

Query: 434 ELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLG 493
            +  I  K +E+  ++K  GYVPD    L  V ++ +E+ L +HSEKLA+AF L+  P G
Sbjct: 550 RIKEIRGKWEEISGKIKEIGYVPDTSHVLLFVDQQEREEKLQYHSEKLALAFALLNTPTG 609

Query: 494 TPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGT 538
           +PIR+ KN+RVCGDCH A K++S +  REIIVRDT RFH F+DG+
Sbjct: 610 SPIRIKKNIRVCGDCHAAIKFVSKVVDREIIVRDTNRFHRFRDGS 654



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 76/248 (30%), Positives = 125/248 (50%), Gaps = 7/248 (2%)

Query: 107 MISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGL 166
           +++ Y +CG LD A  +F   P K +V WTA+I+     G+ +N+   D L L   M+ L
Sbjct: 129 IVNMYAKCGCLDDARRMFDEMPTKDMVTWTALIA-----GFSQNNRPRDALLLFPQMLRL 183

Query: 167 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 226
           G +PN  +LSS+L        L  G Q+H    K          + L+ MY +CG ++ A
Sbjct: 184 GFQPNHFTLSSLLKASGSEHGLDPGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAA 243

Query: 227 CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHA 286
              F  +  K  V+WNA+ISG+A+ G+GE AL L  KM+ +  +P   T+ ++L AC   
Sbjct: 244 QLAFDGMPTKSEVSWNALISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVLSACASI 303

Query: 287 GLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGT 346
           G ++ G      M+   G+         ++D+  +AG + +A  +  ++  KP    + T
Sbjct: 304 GALEQGKWVHAHMIKS-GLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRL-VKPDVVSWNT 361

Query: 347 LLSACRVH 354
           +L+ C  H
Sbjct: 362 MLTGCAQH 369


>gi|356562016|ref|XP_003549271.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 705

 Score =  374 bits (959), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 178/426 (41%), Positives = 269/426 (63%), Gaps = 6/426 (1%)

Query: 120 AVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVL 179
           A ++F  +PVK  V W+AMI GY + G      +   + L R M   G+ P+  ++ SVL
Sbjct: 286 AKKVFDESPVKDSVTWSAMIGGYARAGN-----SARAVTLFREMQVTGVCPDEITMVSVL 340

Query: 180 LGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVV 239
             C+ L +L+LGK +   + +  + +       LI M+ KCGD++ A K+F E++ + +V
Sbjct: 341 SACADLGALELGKWLESYIERKNIMRSVELCNALIDMFAKCGDVDRAVKVFREMKVRTIV 400

Query: 240 TWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSM 299
           +W +MI G A HG+G +A+ +FD+M ++G+ PD + F+ +L AC+H+GLVD G  YF++M
Sbjct: 401 SWTSMIVGLAMHGRGLEAVLVFDEMMEQGVDPDDVAFIGVLSACSHSGLVDKGHYYFNTM 460

Query: 300 VNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDL 359
            N + I  K +HY CMVD+L RAG++ EA++ ++ MP +P   I+ ++++AC     L L
Sbjct: 461 ENMFSIVPKIEHYGCMVDMLSRAGRVNEALEFVRAMPVEPNQVIWRSIVTACHARGELKL 520

Query: 360 AEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVG 419
            E  A  L    P++ +  YV L+NIYA + +W+   ++R  M    + K+PG + IE+ 
Sbjct: 521 GESVAKELIRREPSHESN-YVLLSNIYAKLLRWEKKTKVREMMDVKGMRKIPGSTMIEMN 579

Query: 420 TVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSE 479
             ++EF +GD+ H +   I+E ++E+ + +K AGYVP     L  + EE KE  L  HSE
Sbjct: 580 NEIYEFVAGDKSHDQYKEIYEMVEEMGREIKRAGYVPTTSQVLLDIDEEDKEDALYRHSE 639

Query: 480 KLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTC 539
           KLAIAF L+  P GTPIR+ KNLRVC DCH ATK+IS +  REI+VRD  RFHHFK+G C
Sbjct: 640 KLAIAFALLSTPPGTPIRIVKNLRVCEDCHSATKFISKVYNREIVVRDRNRFHHFKNGLC 699

Query: 540 SCGDYW 545
           SCGD+W
Sbjct: 700 SCGDFW 705



 Score = 65.1 bits (157), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 58/276 (21%), Positives = 112/276 (40%), Gaps = 60/276 (21%)

Query: 30  FDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKA 89
           F++ P       ++   C    S   V+A   F   P+KD+ +W+ MI G+ +  N A+A
Sbjct: 258 FEEDPHVRNTLVHMYCCCCQDGSSGPVSAKKVFDESPVKDSVTWSAMIGGYARAGNSARA 317

Query: 90  RDLFLAMP----------------------------------EKNSVSWS-----AMISG 110
             LF  M                                   E+ ++  S     A+I  
Sbjct: 318 VTLFREMQVTGVCPDEITMVSVLSACADLGALELGKWLESYIERKNIMRSVELCNALIDM 377

Query: 111 YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRP 170
           + +CG +D+AV++F+   V+++V+WT+MI G    G        + + +   M+  G+ P
Sbjct: 378 FAKCGDVDRAVKVFREMKVRTIVSWTSMIVGLAMHGR-----GLEAVLVFDEMMEQGVDP 432

Query: 171 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTP-------LISMYCKCGDL 223
           +  +   VL  CSH   +  G      +      ++  ++ P       ++ M  + G +
Sbjct: 433 DDVAFIGVLSACSHSGLVDKGHYYFNTM------ENMFSIVPKIEHYGCMVDMLSRAGRV 486

Query: 224 EDACKLFLEIQ-RKDVVTWNAMISGYAQHGKGEKAL 258
            +A +    +    + V W ++++  A H +GE  L
Sbjct: 487 NEALEFVRAMPVEPNQVIWRSIVT--ACHARGELKL 520


>gi|357132372|ref|XP_003567804.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
           mitochondrial-like [Brachypodium distachyon]
          Length = 851

 Score =  373 bits (958), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 210/587 (35%), Positives = 311/587 (52%), Gaps = 52/587 (8%)

Query: 5   TTVNWNSVLAGFAK---------------QRGKLKDA---QELFDKIPQPDVVSYNIMLS 46
           T   WN+VL+G A+               ++G   DA     L   +    +V + + + 
Sbjct: 271 TLATWNAVLSGCARHGRDREALAVLRRMLEQGLWPDATTVSSLLKSVANAGMVRHGMEVH 330

Query: 47  CILLNSDDVVAAFD-------------------FFQRLPIKDTASWNTMISGFVQKKNMA 87
           C  L    V  A+                     F  L  ++ A+WN++++G        
Sbjct: 331 CFFLRHGLVPDAYTGTALVDMYAKCGRLDCARRVFDTLEHRNLATWNSLVAGHAYAGQFE 390

Query: 88  KARDLFLAMP----EKNSVSWSAMISGYIECGQLDKAVELFK----VAPVKSVVAWTAMI 139
            A +L   M     + N  +W+ +I+GY   G   +A+ L +         +VV+WT++I
Sbjct: 391 AALELVERMKRNRLDPNVTTWNGLITGYSLNGLSSQAMLLLRQIKAAGLTPNVVSWTSLI 450

Query: 140 SGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVF 199
           SG        N   ED     + M   G++P+  ++  +L  C+ L+ L+ GK++H    
Sbjct: 451 SGS-----CHNGEYEDSFNFFKEMQKDGVQPSLVTMLVLLRACAGLALLKKGKELHCFAL 505

Query: 200 KSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALR 259
           +     D    T LI MY K G L  A ++F  IQ K++V  NAM++G A HG+  +A+ 
Sbjct: 506 RRAYDCDMVVGTALIDMYSKAGSLTSAKRIFGRIQNKNLVCCNAMLTGLAVHGQSHEAIT 565

Query: 260 LFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLL 319
           LF  +   G+KPDSITF ALL AC   GL+  G +YFD+M   YG+    ++Y CMVDLL
Sbjct: 566 LFHDLWRSGLKPDSITFTALLTACRSMGLITEGWEYFDNMETKYGVVPTAENYACMVDLL 625

Query: 320 GRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCY 379
            R+G L EA+ LI++ P  P  +++G LL+ C +H  LDLAE AA NLF L P N+A  Y
Sbjct: 626 ARSGYLDEAMALIERSPVDPGASLWGALLTGCSIHGNLDLAEVAARNLFRLEPYNSAN-Y 684

Query: 380 VQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIH 439
           + + ++Y   + +D+   ++ +MK   V   PG+SWI++   +H F      HPE   I 
Sbjct: 685 LMIMSLYEHEQMYDEADSLKYAMKARGVNTRPGWSWIQIEQGIHVFEVDGSPHPETAEIC 744

Query: 440 EKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGT-PIRV 498
           E+L  L +++K+ GYVPD    ++ V EE KE+LLL H+EKLAI +GLI       P+RV
Sbjct: 745 EELMSLVRQIKMTGYVPDTSCVVYNVPEEEKEKLLLCHTEKLAITYGLIHSDASRMPVRV 804

Query: 499 FKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
            KN R+C DCH   K+ISA+  R+II+RD  RFHHF DG CSC DYW
Sbjct: 805 IKNTRMCSDCHEVAKHISALCGRQIILRDAVRFHHFVDGNCSCNDYW 851



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 71/306 (23%), Positives = 135/306 (44%), Gaps = 45/306 (14%)

Query: 54  DVVAAFDFFQR-LPIKDTASWNTMISGFVQKKNMAKARDLFLAM----PEKNSVSWSAMI 108
           DV AA     R  P   + +W+ +++  V+   +  A +L   M    PE    +W+A++
Sbjct: 220 DVAAATAVLLRATPPPRSVAWDAVVACCVRLGLVDDAMELAGRMARDGPEPTLATWNAVL 279

Query: 109 SGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGI 168
           SG    G+ D+                                   + L +LR M+  G+
Sbjct: 280 SGCARHGR-DR-----------------------------------EALAVLRRMLEQGL 303

Query: 169 RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK 228
            P+A+++SS+L   ++   ++ G +VH    +  L  D    T L+ MY KCG L+ A +
Sbjct: 304 WPDATTVSSLLKSVANAGMVRHGMEVHCFFLRHGLVPDAYTGTALVDMYAKCGRLDCARR 363

Query: 229 LFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGL 288
           +F  ++ +++ TWN++++G+A  G+ E AL L ++MK   + P+  T+  L+   +  GL
Sbjct: 364 VFDTLEHRNLATWNSLVAGHAYAGQFEAALELVERMKRNRLDPNVTTWNGLITGYSLNGL 423

Query: 289 VDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP---FKPQPAIFG 345
               +      +   G+      +T ++      G+  ++ +  K+M     +P      
Sbjct: 424 SSQAMLLL-RQIKAAGLTPNVVSWTSLISGSCHNGEYEDSFNFFKEMQKDGVQPSLVTML 482

Query: 346 TLLSAC 351
            LL AC
Sbjct: 483 VLLRAC 488



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 63/267 (23%), Positives = 109/267 (40%), Gaps = 80/267 (29%)

Query: 99  KNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLK 158
           K++V W+  ++   E G+ D+A+  F                                  
Sbjct: 132 KDAVLWNKQVAMLAEAGEWDEAIGAF---------------------------------- 157

Query: 159 LLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTP--LISM 216
             R M   G+  +  +L+ VL  C   ++ + GK VH    K+ L  D   L P  L  M
Sbjct: 158 --REMQARGVAADGYALARVLHACGRAAARREGKAVHAHALKAGLV-DAHPLVPGFLAGM 214

Query: 217 YCKCGD--------------------------------LEDACKLFLEIQRK----DVVT 240
           Y +  D                                ++DA +L   + R      + T
Sbjct: 215 YAEGADVAAATAVLLRATPPPRSVAWDAVVACCVRLGLVDDAMELAGRMARDGPEPTLAT 274

Query: 241 WNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV 300
           WNA++SG A+HG+  +AL +  +M ++G+ PD+ T  +LL +  +AG+V  G++     +
Sbjct: 275 WNAVLSGCARHGRDREALAVLRRMLEQGLWPDATTVSSLLKSVANAGMVRHGMEVHCFFL 334

Query: 301 NDYGIAAKPDHY--TCMVDLLGRAGKL 325
             +G+   PD Y  T +VD+  + G+L
Sbjct: 335 R-HGLV--PDAYTGTALVDMYAKCGRL 358


>gi|110289149|gb|ABB47711.2| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 697

 Score =  373 bits (958), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 202/529 (38%), Positives = 300/529 (56%), Gaps = 46/529 (8%)

Query: 55  VVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM------PEKNSVS----- 103
           V  A   F  +P +D  SW ++I+G+ Q     +A  L   M      P   + +     
Sbjct: 115 VADARRVFDGMPARDMCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKA 174

Query: 104 ---------------------W-------SAMISGYIECGQLDKAVELFKVAPVKSVVAW 135
                                W       SA++  Y  CG++D A+ +F     K+ V+W
Sbjct: 175 AGASASSGIGEQIHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSW 234

Query: 136 TAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVH 195
            A+I+G+ + G  E +     L +   M   G      + SSV    + + +L+ GK VH
Sbjct: 235 NALIAGFARKGDGETT-----LLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVH 289

Query: 196 QLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGE 255
             + KS           ++ MY K G + DA K+F  + +KDVVTWN+M++ +AQ+G G 
Sbjct: 290 AHMIKSGERLSAFVGNTILDMYAKSGSMIDARKVFDRVDKKDVVTWNSMLTAFAQYGLGR 349

Query: 256 KALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCM 315
           +A+  F++M+  G+  + ITF+++L AC+H GLV  G QYFD M+ +Y +  + DHY  +
Sbjct: 350 EAVTHFEEMRKCGVHLNQITFLSILTACSHGGLVKEGKQYFD-MMKEYNLEPEIDHYVTV 408

Query: 316 VDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANA 375
           VDLLGRAG L +A+  I KMP KP  A++G LL +CR+HK   + +FAA ++F L+P + 
Sbjct: 409 VDLLGRAGLLNDALVFIFKMPMKPTAAVWGALLGSCRMHKNAKIGQFAADHVFELDPDDT 468

Query: 376 AGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPEL 435
            G  V L NIYA+  +WD  AR+R  MK   V K P  SW+E+   VH F + D  HP  
Sbjct: 469 -GPPVLLYNIYASTGQWDAAARVRKMMKATGVKKEPACSWVEIENSVHMFVANDDTHPRS 527

Query: 436 VSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTP 495
             I++K +E+  +++ AGYVP+ ++ L  V E+ ++  L +HSEK+A+AF LI +PLG  
Sbjct: 528 EEIYKKWEEISIQIRKAGYVPNTDYVLLHVDEQERQAKLQYHSEKIALAFALINMPLGAT 587

Query: 496 IRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDY 544
           IR+ KN+R+CGDCH A +YIS + KREI+VRDT RFHHF  G+CSCGDY
Sbjct: 588 IRIMKNIRICGDCHSAFRYISKVFKREIVVRDTNRFHHFSSGSCSCGDY 636



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 59/231 (25%), Positives = 119/231 (51%), Gaps = 6/231 (2%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI 164
           +++I  Y +CG +  A  +F   P + + +WT++I+GY      +N   ++ L LL  M+
Sbjct: 103 NSLIHLYCKCGAVADARRVFDGMPARDMCSWTSLIAGY-----AQNDMPDEALGLLPGML 157

Query: 165 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 224
               +PN  + +S+L      +S  +G+Q+H L  K     D    + L+ MY +CG ++
Sbjct: 158 RGRFKPNGFTFASLLKAAGASASSGIGEQIHALTVKYDWHDDVYVGSALLDMYARCGRMD 217

Query: 225 DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 284
            A  +F +++ K+ V+WNA+I+G+A+ G GE  L +F +M+  G +    T+ ++  A  
Sbjct: 218 MAIAVFDQLESKNGVSWNALIAGFARKGDGETTLLMFAEMQRNGFEATHFTYSSVFSAIA 277

Query: 285 HAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335
             G ++ G      M+   G          ++D+  ++G +++A  +  ++
Sbjct: 278 GIGALEQGKWVHAHMIKS-GERLSAFVGNTILDMYAKSGSMIDARKVFDRV 327



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 80/168 (47%), Gaps = 13/168 (7%)

Query: 177 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK 236
           S++  C+   SL   + +H  +  S           LI +YCKCG + DA ++F  +  +
Sbjct: 69  SLITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVADARRVFDGMPAR 128

Query: 237 DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYF 296
           D+ +W ++I+GYAQ+   ++AL L   M     KP+  TF +LL A   +    +G Q  
Sbjct: 129 DMCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGIGEQI- 187

Query: 297 DSMVNDYGIAAKPDHY------TCMVDLLGRAGKLVEAVDLIKKMPFK 338
                 + +  K D +      + ++D+  R G++  A+ +  ++  K
Sbjct: 188 ------HALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESK 229


>gi|115446651|ref|NP_001047105.1| Os02g0552100 [Oryza sativa Japonica Group]
 gi|46389885|dbj|BAD15486.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113536636|dbj|BAF09019.1| Os02g0552100 [Oryza sativa Japonica Group]
 gi|125582482|gb|EAZ23413.1| hypothetical protein OsJ_07107 [Oryza sativa Japonica Group]
 gi|215712305|dbj|BAG94432.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 586

 Score =  373 bits (958), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 195/481 (40%), Positives = 278/481 (57%), Gaps = 42/481 (8%)

Query: 69  DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAP 128
           D  SWNTM+SG+ +  ++  AR++F  MPE+N VSWSAM+   +  G+  +A+ +F    
Sbjct: 144 DVVSWNTMVSGYGKGGDLGAAREVFARMPERNLVSWSAMVDACVRAGEFGEALWVFD--- 200

Query: 129 VKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSL 188
                                             M+    RP+   L SVL  C+HL ++
Sbjct: 201 ---------------------------------RMMREEFRPDVVVLVSVLKACAHLGAV 227

Query: 189 QLGKQVHQLVFKSPLCKDTTAL---TPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMI 245
           + G+ VH+ +           L   T L+ MYCKCG +EDA ++F  + R+DVV WNAMI
Sbjct: 228 ERGRWVHRYLETGSFGGRRGNLMLETALVDMYCKCGCMEDAWQVFDGVHRRDVVLWNAMI 287

Query: 246 SGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGI 305
            G A +G GE+AL LF +M  +G  P+  TF+A+L AC H G VD G + F SM  DYGI
Sbjct: 288 GGLAMNGYGERALELFRRMLQKGFMPNESTFIAVLCACTHTGRVDEGKRVFKSM-QDYGI 346

Query: 306 AAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAM 365
             + +HY C+ DLLGRAG + EA  L+  MP +P  + +G L+S+C++H  +++ E    
Sbjct: 347 KPQREHYGCLADLLGRAGNVEEAEALLLDMPMEPHASQWGALMSSCQMHNDINVGERVGK 406

Query: 366 NLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEF 425
            L  L P +  G YV L N+YA   +W++   IR  M++    K  G S+IE+  +VHEF
Sbjct: 407 RLIELEPYD-GGRYVVLFNLYAVNGRWEEARTIRQMMEDRGAKKETGLSFIELNGLVHEF 465

Query: 426 RSGDRVHPELVSIHEKLKELEKRMKLAGYVPDL-EFALHAVGEEVKEQLLLFHSEKLAIA 484
            SGD  HP    I+  L+++E+R++L GYV D  +  +    EE K   L +HSE+LA+A
Sbjct: 466 ISGDTRHPLTRKIYALLEDIERRLQLIGYVKDTSQVIMDMDDEEDKGIALSYHSERLALA 525

Query: 485 FGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDY 544
           FG++ +P G PIR+ KNLRVC DCH  +K +S + +REIIVRD  RFH F+DG CSC DY
Sbjct: 526 FGILNIPQGVPIRIVKNLRVCRDCHVHSKLVSKLYEREIIVRDRHRFHVFRDGVCSCNDY 585

Query: 545 W 545
           W
Sbjct: 586 W 586



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 62/258 (24%), Positives = 104/258 (40%), Gaps = 49/258 (18%)

Query: 37  DVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM 96
           DVVS+N M+S       D+ AA + F R+P ++  SW+ M+   V+     +A  +F  M
Sbjct: 144 DVVSWNTMVSG-YGKGGDLGAAREVFARMPERNLVSWSAMVDACVRAGEFGEALWVFDRM 202

Query: 97  PEK------------------------------------------NSVSWSAMISGYIEC 114
             +                                          N +  +A++  Y +C
Sbjct: 203 MREEFRPDVVVLVSVLKACAHLGAVERGRWVHRYLETGSFGGRRGNLMLETALVDMYCKC 262

Query: 115 GQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASS 174
           G ++ A ++F     + VV W AMI G    GY      E  L+L R M+  G  PN S+
Sbjct: 263 GCMEDAWQVFDGVHRRDVVLWNAMIGGLAMNGY-----GERALELFRRMLQKGFMPNEST 317

Query: 175 LSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI- 233
             +VL  C+H   +  GK+V + +    +         L  +  + G++E+A  L L++ 
Sbjct: 318 FIAVLCACTHTGRVDEGKRVFKSMQDYGIKPQREHYGCLADLLGRAGNVEEAEALLLDMP 377

Query: 234 QRKDVVTWNAMISGYAQH 251
                  W A++S    H
Sbjct: 378 MEPHASQWGALMSSCQMH 395



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/235 (24%), Positives = 104/235 (44%), Gaps = 39/235 (16%)

Query: 187 SLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMIS 246
           SL L  +  ++++      D  +   ++S Y K GDL  A ++F  +  +++V+W+AM+ 
Sbjct: 125 SLGLLDRARRVLYSGGAALDVVSWNTMVSGYGKGGDLGAAREVFARMPERNLVSWSAMVD 184

Query: 247 GYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGI---QYFDS----- 298
              + G+  +AL +FD+M  E  +PD +  V++L AC H G V+ G    +Y ++     
Sbjct: 185 ACVRAGEFGEALWVFDRMMREEFRPDVVVLVSVLKACAHLGAVERGRWVHRYLETGSFGG 244

Query: 299 ----------MVNDY--------------GIAAKP-DHYTCMVDLLGRAGKLVEAVDLIK 333
                     +V+ Y              G+  +    +  M+  L   G    A++L +
Sbjct: 245 RRGNLMLETALVDMYCKCGCMEDAWQVFDGVHRRDVVLWNAMIGGLAMNGYGERALELFR 304

Query: 334 KM---PFKPQPAIFGTLLSACRVHKRLDLAE--FAAMNLFNLNPANAA-GCYVQL 382
           +M    F P  + F  +L AC    R+D  +  F +M  + + P     GC   L
Sbjct: 305 RMLQKGFMPNESTFIAVLCACTHTGRVDEGKRVFKSMQDYGIKPQREHYGCLADL 359


>gi|297741948|emb|CBI33393.3| unnamed protein product [Vitis vinifera]
          Length = 752

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 188/456 (41%), Positives = 284/456 (62%), Gaps = 9/456 (1%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  K  V+WNS+L G+ +  G+++   + F+++ + DVVS+N+M+    +   D+ ++++
Sbjct: 53  MPAKDLVSWNSMLTGYTRN-GEMRLGLQFFEEMAERDVVSWNLMVDG-FVEVGDLNSSWE 110

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
           FF+++P  +T SW TM+ GF +   +A+AR LF  MP +N V+W+AMI+ Y++   +D+A
Sbjct: 111 FFEKIPNPNTVSWVTMLCGFARFGKIAEARRLFDQMPIRNVVAWNAMIAAYVQNCHVDEA 170

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLL 180
           + LF   P K+ ++WT +I+GY++ G ++     +  +LL  M     +P+ S+ +  L 
Sbjct: 171 ISLFMEMPEKNSISWTTVINGYVRMGKLD-----EARQLLNQMPYRN-KPDQSTFACGLS 224

Query: 181 GCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVT 240
            C+HL++LQ+GKQ+HQLV KS    D      LI+MY KCG +  A  LF +I   DVV+
Sbjct: 225 SCAHLAALQVGKQLHQLVMKSGYATDLFVSNALITMYAKCGSISSAELLFKDIDHFDVVS 284

Query: 241 WNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV 300
           WN++I+ YA +G G +AL+LF KM+ EG+ PD +TFV +L AC+H GL+D G++ F  MV
Sbjct: 285 WNSLIAAYALNGNGREALKLFHKMEVEGVAPDEVTFVGILSACSHVGLIDQGLKLFKCMV 344

Query: 301 NDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLA 360
             Y I    +HY CMVDLLGRAG+L EA  L++ M       I+G LL ACR+H  L+LA
Sbjct: 345 QAYNIEPLAEHYACMVDLLGRAGRLEEAFQLVRGMKINANAGIWGALLGACRIHGNLELA 404

Query: 361 EFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGT 420
           +FAA  L    P   +  YV L+N+ A   +WD+VAR+R  MKE    K PG+SWIE+  
Sbjct: 405 KFAAEKLLEFEPHKTSN-YVLLSNMQAEAGRWDEVARVRRLMKEKGAEKQPGWSWIELQN 463

Query: 421 VVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVP 456
            VH F S D  HP  V +   L+ L   M+  G +P
Sbjct: 464 RVHAFLSEDPAHPRAVELCHILRSLTAHMRNTGDMP 499



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 76/279 (27%), Positives = 126/279 (45%), Gaps = 56/279 (20%)

Query: 76  MISGFVQKKNMAKARDLFLAMPEK-NSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVA 134
           MI+ + +   +AKAR+LF  +P K N V  +AM++GY +  Q D+A  LF   P K +V+
Sbjct: 1   MITCYTRNGELAKARNLFNLLPYKWNPVCCNAMVAGYAKNRQFDEARRLFDAMPAKDLVS 60

Query: 135 WTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQV 194
           W +M++GY + G                                         ++LG Q 
Sbjct: 61  WNSMLTGYTRNG----------------------------------------EMRLGLQ- 79

Query: 195 HQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKG 254
               F+    +D  +   ++  + + GDL  + + F +I   + V+W  M+ G+A+ GK 
Sbjct: 80  ---FFEEMAERDVVSWNLMVDGFVEVGDLNSSWEFFEKIPNPNTVSWVTMLCGFARFGKI 136

Query: 255 EKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTC 314
            +A RLFD+M    +   +    A +  C+    VD  I  F  M     I+     +T 
Sbjct: 137 AEARRLFDQMPIRNVVAWNAMIAAYVQNCH----VDEAISLFMEMPEKNSIS-----WTT 187

Query: 315 MVDLLGRAGKLVEAVDLIKKMPF--KPQPAIFGTLLSAC 351
           +++   R GKL EA  L+ +MP+  KP  + F   LS+C
Sbjct: 188 VINGYVRMGKLDEARQLLNQMPYRNKPDQSTFACGLSSC 226


>gi|125544467|gb|EAY90606.1| hypothetical protein OsI_12205 [Oryza sativa Indica Group]
          Length = 818

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 205/542 (37%), Positives = 297/542 (54%), Gaps = 33/542 (6%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G +KDA+  F+ IP  DV+  + M+S     S+    AF+ F RL           +S  
Sbjct: 293 GDIKDARLAFEMIPYDDVILLSFMIS-RYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSV 351

Query: 81  VQK-KNMAK----------------ARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVEL 123
           +Q   NM +                  DLF+          +A++  Y +C  +D ++++
Sbjct: 352 LQACTNMVQLDFGKQIHNHAIKIGHESDLFVG---------NALMDFYAKCNDMDSSLKI 402

Query: 124 FKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCS 183
           F      + V+W  ++ G+ + G       E+ L +   M    +     + SSVL  C+
Sbjct: 403 FSSLRDANEVSWNTIVVGFSQSGL-----GEEALSVFCEMQAAQMPCTQVTYSSVLRACA 457

Query: 184 HLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNA 243
             +S++   Q+H  + KS    DT     LI  Y KCG + DA K+F  +  +D+++WNA
Sbjct: 458 STASIRHAGQIHCSIEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWNA 517

Query: 244 MISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDY 303
           +ISGYA HG+   AL LFD+M    ++ + ITFVALL  C   GLV+ G+  FDSM  D+
Sbjct: 518 IISGYALHGQAADALELFDRMNKSNVESNDITFVALLSVCCSTGLVNHGLSLFDSMRIDH 577

Query: 304 GIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFA 363
           GI    +HYTC+V LLGRAG+L +A+  I  +P  P   ++  LLS+C +HK + L  F+
Sbjct: 578 GIKPSMEHYTCIVRLLGRAGRLNDALQFIGDIPSAPSAMVWRALLSSCIIHKNVALGRFS 637

Query: 364 AMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVH 423
           A  +  + P +    YV L+N+YAA    D VA +R SM+   V K+PG SW+E+   +H
Sbjct: 638 AEKILEIEPQDET-TYVLLSNMYAAAGSLDQVALLRKSMRNIGVRKVPGLSWVEIKGEIH 696

Query: 424 EFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAI 483
            F  G   HP++  I+  L+ L  +    GY+PD+   LH V +E K ++L  HSE+LA+
Sbjct: 697 AFSVGSVDHPDMRVINAMLEWLNLKTSREGYIPDINVVLHDVDKEQKTRMLWVHSERLAL 756

Query: 484 AFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGD 543
           A+GL+  P G PIR+ KNLR C DCH A   IS I KREIIVRD  RFHHF+DG CSCGD
Sbjct: 757 AYGLVMTPPGHPIRILKNLRSCLDCHTAFTVISKIVKREIIVRDINRFHHFEDGKCSCGD 816

Query: 544 YW 545
           YW
Sbjct: 817 YW 818



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 76/301 (25%), Positives = 127/301 (42%), Gaps = 39/301 (12%)

Query: 11  SVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDT 70
           +VL     + G L  A+ LFD++P+ ++VS+ + L        D  AA   F+RL  +  
Sbjct: 100 NVLLNMYGKLGPLASARRLFDRMPERNMVSF-VTLVQAHAQRGDFEAAAALFRRLRWEGH 158

Query: 71  ASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSW-----------SAMISGYIECGQLDK 119
                +++  ++   +A A D        +S +W           S +I  Y  C  +  
Sbjct: 159 EVNQFVLTTMLK---LAIAMDAAGLAGGVHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSD 215

Query: 120 AVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVL 179
           A  +F     K  V WTAM+S Y      EN   E+  +             A S S + 
Sbjct: 216 AEHVFNGIVRKDAVVWTAMVSCYS-----ENDCPENAFRC------------AQSCSLLA 258

Query: 180 LGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVV 239
           + C+        + +H    K+    +      L+ MY KCGD++DA   F  I   DV+
Sbjct: 259 ISCAR-------QGIHGCAIKTLNDTEPHVGGALLDMYAKCGDIKDARLAFEMIPYDDVI 311

Query: 240 TWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSM 299
             + MIS YAQ  + E+A  LF ++    + P+  +  ++L AC +   +D G Q  +  
Sbjct: 312 LLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACTNMVQLDFGKQIHNHA 371

Query: 300 V 300
           +
Sbjct: 372 I 372



 Score = 52.0 bits (123), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 61/278 (21%), Positives = 123/278 (44%), Gaps = 22/278 (7%)

Query: 7   VNWNSVLAGFAKQRGKLKDAQELF-----DKIPQPDVVSYNIMLSCI----LLNSDDVVA 57
           V+WN+++ GF+ Q G  ++A  +F      ++P   V   +++ +C     + ++  +  
Sbjct: 412 VSWNTIVVGFS-QSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASIRHAGQIHC 470

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQL 117
           + +  +     DT   N++I  + +   +  A  +F  + E++ +SW+A+ISGY   GQ 
Sbjct: 471 SIE--KSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWNAIISGYALHGQA 528

Query: 118 DKAVELFKVAPVKSV----VAWTAMISGYMKFGYVENSWAEDGLKLL-RMMIGLGIRPNA 172
             A+ELF      +V    + + A++S     G V +     GL L   M I  GI+P+ 
Sbjct: 529 ADALELFDRMNKSNVESNDITFVALLSVCCSTGLVNH-----GLSLFDSMRIDHGIKPSM 583

Query: 173 SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLE 232
              + ++        L    Q    +  +P      AL     ++        + +  LE
Sbjct: 584 EHYTCIVRLLGRAGRLNDALQFIGDIPSAPSAMVWRALLSSCIIHKNVALGRFSAEKILE 643

Query: 233 IQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMK 270
           I+ +D  T+  + + YA  G  ++   L   M++ G++
Sbjct: 644 IEPQDETTYVLLSNMYAAAGSLDQVALLRKSMRNIGVR 681


>gi|356536721|ref|XP_003536884.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g62890-like [Glycine max]
          Length = 1116

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 194/457 (42%), Positives = 283/457 (61%), Gaps = 4/457 (0%)

Query: 89  ARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYV 148
           AR  F  + + +  SW+A+I    + G +  A +LF   P K+V++W+ MI GY+  G  
Sbjct: 114 ARQAFDEITQPDLPSWNAIIHANAKAGMIHIARKLFDQMPEKNVISWSCMIHGYVSCG-- 171

Query: 149 ENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTT 208
           E   A    + L+ + G  +RPN  ++SSVL  C+ L +LQ GK VH  + K+ +  D  
Sbjct: 172 EYKAALSLFRSLQTLEGSQLRPNEFTMSSVLSACARLGALQHGKWVHAYIDKTGMKIDVV 231

Query: 209 ALTPLISMYCKCGDLEDACKLFLEI-QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE 267
             T LI MY KCG +E A  +F  +   KDV+ W+AMI+ ++ HG  E+ L LF +M ++
Sbjct: 232 LGTSLIDMYAKCGSIERAKCIFDNLGPEKDVMAWSAMITAFSMHGLSEECLELFARMVND 291

Query: 268 GMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVE 327
           G++P+++TFVA+L AC H GLV  G +YF  M+N+YG++    HY CMVDL  RAG++ +
Sbjct: 292 GVRPNAVTFVAVLCACVHGGLVSEGNEYFKRMMNEYGVSPMIQHYGCMVDLYSRAGRIED 351

Query: 328 AVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYA 387
           A +++K MP +P   I+G LL+  R+H  ++  E A   L  L+PAN++  YV L+N+YA
Sbjct: 352 AWNVVKSMPMEPDVMIWGALLNGARIHGDVETCEIAITKLLELDPANSSA-YVLLSNVYA 410

Query: 388 AMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEK 447
            + +W +V  +R  M+   + K+PG S +EV  V+ EF +GD  HPEL++++  L E+ K
Sbjct: 411 KLGRWREVRHLRDLMEVRGIKKLPGCSLVEVDGVIREFFAGDNSHPELLNLYVMLDEIMK 470

Query: 448 RMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGD 507
           R++  GY  +    L  + EE KE  L  HSEKLAIA+  ++   GT IR+ KNLR+C D
Sbjct: 471 RLEKHGYERNTGEVLLDLDEEGKEFALSLHSEKLAIAYCFLRTSPGTTIRIVKNLRICSD 530

Query: 508 CHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDY 544
           CH A K IS    REIIVRD  RFHHFK+G CSC DY
Sbjct: 531 CHVAIKIISKEFNREIIVRDCNRFHHFKNGLCSCKDY 567



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 69/278 (24%), Positives = 125/278 (44%), Gaps = 57/278 (20%)

Query: 26  AQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKN 85
           A++ FD+I QPD+ S+N ++      +  +  A   F ++P K+  SW+ MI G+V    
Sbjct: 114 ARQAFDEITQPDLPSWNAIIHAN-AKAGMIHIARKLFDQMPEKNVISWSCMIHGYVSCGE 172

Query: 86  MAKARDLFLAM---------PEKNSVS----------------W---------------- 104
              A  LF ++         P + ++S                W                
Sbjct: 173 YKAALSLFRSLQTLEGSQLRPNEFTMSSVLSACARLGALQHGKWVHAYIDKTGMKIDVVL 232

Query: 105 -SAMISGYIECGQLDKAVELF-KVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRM 162
            +++I  Y +CG +++A  +F  + P K V+AW+AMI+ +   G      +E+ L+L   
Sbjct: 233 GTSLIDMYAKCGSIERAKCIFDNLGPEKDVMAWSAMITAFSMHGL-----SEECLELFAR 287

Query: 163 MIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK----SPLCKDTTALTPLISMYC 218
           M+  G+RPNA +  +VL  C H   +  G +  + +      SP+ +       ++ +Y 
Sbjct: 288 MVNDGVRPNAVTFVAVLCACVHGGLVSEGNEYFKRMMNEYGVSPMIQHYGC---MVDLYS 344

Query: 219 KCGDLEDACKLFLEI-QRKDVVTWNAMISGYAQHGKGE 255
           + G +EDA  +   +    DV+ W A+++G   HG  E
Sbjct: 345 RAGRIEDAWNVVKSMPMEPDVMIWGALLNGARIHGDVE 382



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 83/191 (43%), Gaps = 9/191 (4%)

Query: 135 WTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQV 194
           W  +I    +   V+N      L L   M    + P+  +   +L     +++   G+Q+
Sbjct: 27  WNNLIRASTR-SRVQNPAFPPALSLYLRMRLHAVLPDLHTFPFLL---QSINTPHRGRQL 82

Query: 195 HQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKG 254
           H  +    L  D    T LI+MY  CG    A + F EI + D+ +WNA+I   A+ G  
Sbjct: 83  HAQILLLGLANDPFVQTSLINMYSSCGTPTFARQAFDEITQPDLPSWNAIIHANAKAGMI 142

Query: 255 EKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTC 314
             A +LFD+M ++ +    I++  ++      G     +  F S+    G   +P+ +T 
Sbjct: 143 HIARKLFDQMPEKNV----ISWSCMIHGYVSCGEYKAALSLFRSLQTLEGSQLRPNEFT- 197

Query: 315 MVDLLGRAGKL 325
           M  +L    +L
Sbjct: 198 MSSVLSACARL 208


>gi|225457427|ref|XP_002282084.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Vitis vinifera]
          Length = 643

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 189/486 (38%), Positives = 295/486 (60%), Gaps = 8/486 (1%)

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAV 121
           F+ +   +  +WN +++   +  ++  A  +F  MP +N  SW+ M++GY + G+L+ A 
Sbjct: 164 FEEMFEPNVVAWNAVVTACFRCGDVKGADMMFNRMPFRNLTSWNVMLAGYTKAGELELAR 223

Query: 122 ELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLG 181
           +LF   PVK  V+W+ MI      G+  N +  +     R +  +G+RPN  SL+  L  
Sbjct: 224 KLFLEMPVKDDVSWSTMI-----VGFAHNGFFYEAFGFFRELQQVGMRPNEVSLTGALSA 278

Query: 182 CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI-QRKDVVT 240
           C+   +++ GK +H  + KS      +    L+  Y KCG++  A  +F  + +++ +V+
Sbjct: 279 CADAGAIEFGKILHGFIEKSGFLWMVSVNNALLDTYSKCGNVGMARLVFERMPEKRSIVS 338

Query: 241 WNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV 300
           W +MI+G A HG GE+A++LF +M++ G++PD I F+++L AC+HAGL++ G +YF  M 
Sbjct: 339 WTSMIAGLAMHGYGEEAIQLFHEMEESGIRPDGIAFISILYACSHAGLIEKGYEYFYKMK 398

Query: 301 NDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLA 360
           + Y I    +HY CMVDL GRAG+L +A + I  MP  P   I+ TLL AC +H  + LA
Sbjct: 399 DIYNIEPAIEHYGCMVDLYGRAGQLDKAYEFIIHMPVLPTAIIWRTLLGACSIHGNVKLA 458

Query: 361 EFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGT 420
           E     L  L+P N +G +V L+NIYA   KW DVA +R SM +  + K PG+S IEV  
Sbjct: 459 ERVKERLSELDP-NNSGDHVLLSNIYAVAGKWKDVAAVRRSMTDQRMNKTPGWSMIEVDK 517

Query: 421 VVHEFRSGDRVHPELVSIHEKLKELEKRMKLAG-YVPDLEFALHAVGEEVKEQLLLFHSE 479
           +++ F +G+  +      +EKLKE+  ++++ G Y+P++   LH + +E KE  +  HSE
Sbjct: 518 IMYSFVAGEVQNSITEEAYEKLKEIMLKLRVEGCYIPEVGSVLHDIEDEEKEDSVSRHSE 577

Query: 480 KLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTC 539
           KLA+AFG+ ++  G+ IR+ KNLRVC DCH   K IS +   EI+VRD +RFH FK G+C
Sbjct: 578 KLAVAFGIARLCKGSIIRIVKNLRVCRDCHTVMKLISKVYGLEIVVRDRSRFHSFKTGSC 637

Query: 540 SCGDYW 545
           SC DYW
Sbjct: 638 SCRDYW 643



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 72/283 (25%), Positives = 133/283 (46%), Gaps = 30/283 (10%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  +   +WN +LAG+ K  G+L+ A++LF ++P  D VS++ M+     N      AF 
Sbjct: 198 MPFRNLTSWNVMLAGYTKA-GELELARKLFLEMPVKDDVSWSTMIVGFAHNG-FFYEAFG 255

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARD---LFLAMPEKNSVSW-----SAMISGYI 112
           FF+ L           ++G +     A A +   +     EK+   W     +A++  Y 
Sbjct: 256 FFRELQQVGMRPNEVSLTGALSACADAGAIEFGKILHGFIEKSGFLWMVSVNNALLDTYS 315

Query: 113 ECGQLDKAVELFKVAPVK-SVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPN 171
           +CG +  A  +F+  P K S+V+WT+MI+G    GY      E+ ++L   M   GIRP+
Sbjct: 316 KCGNVGMARLVFERMPEKRSIVSWTSMIAGLAMHGY-----GEEAIQLFHEMEESGIRPD 370

Query: 172 ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTP-------LISMYCKCGDLE 224
             +  S+L  CSH   ++ G   ++  +K    KD   + P       ++ +Y + G L+
Sbjct: 371 GIAFISILYACSHAGLIEKG---YEYFYK---MKDIYNIEPAIEHYGCMVDLYGRAGQLD 424

Query: 225 DACKLFLEIQ-RKDVVTWNAMISGYAQHGKGEKALRLFDKMKD 266
            A +  + +      + W  ++   + HG  + A R+ +++ +
Sbjct: 425 KAYEFIIHMPVLPTAIIWRTLLGACSIHGNVKLAERVKERLSE 467


>gi|224089225|ref|XP_002308660.1| predicted protein [Populus trichocarpa]
 gi|222854636|gb|EEE92183.1| predicted protein [Populus trichocarpa]
          Length = 487

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 189/457 (41%), Positives = 268/457 (58%), Gaps = 37/457 (8%)

Query: 89  ARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYV 148
           AR +F  M + +SVSWSAMI GY+  G+   A+ LF+   +K                  
Sbjct: 68  ARKVFDEMYKSDSVSWSAMIGGYVRVGRSSDAINLFREMQIK------------------ 109

Query: 149 ENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTT 208
                             G+ P+  ++ SVL  C+ L +L+LGK V   V K  + K+  
Sbjct: 110 ------------------GVCPDEITMVSVLSACTGLGALELGKWVESYVEKERVQKNVE 151

Query: 209 ALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEG 268
               LI M+ KCGD++ A  LF  ++ +++V+W ++I G A HG+G +A+ +F++M   G
Sbjct: 152 LSNALIDMFAKCGDVDKATNLFRSMRERNIVSWTSVIGGLAMHGRGVEAVAVFEEMVRSG 211

Query: 269 MKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEA 328
           + PD + F+ LL AC+H+GLVD G +YFDSM  D+ I  K +HY CMVD+L RAG + EA
Sbjct: 212 VTPDDVVFIGLLSACSHSGLVDKGKRYFDSMRKDFSIVPKIEHYGCMVDMLCRAGLVKEA 271

Query: 329 VDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAA 388
           +  +++MP  P P ++ TL++ACR H  L L E     L    P + +  YV L+NIYA 
Sbjct: 272 LKFVQEMPIDPNPVVWRTLINACRAHGELKLGEKITRQLIRNEPMHESN-YVLLSNIYAK 330

Query: 389 MKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKR 448
           M  W+   RIR +M    + K+PG + IE+   ++EF +GD+ H +   I+E + E+ K 
Sbjct: 331 MSDWEKKTRIREAMDMKGMKKIPGSTMIELDNEIYEFVAGDKSHAQSKEIYEMVDEMGKE 390

Query: 449 MKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDC 508
           MK AGY+P     L  + +E KE  L  HSEKLAIAF L+  P GT IR+ KNLRVC DC
Sbjct: 391 MKRAGYMPTTTEVLLDIDDEDKEDTLNRHSEKLAIAFALLNTPPGTLIRIVKNLRVCDDC 450

Query: 509 HRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           H A+K+IS I  REI+VRD  RFHHFK+G CSC D+W
Sbjct: 451 HSASKFISKIYNREIVVRDRNRFHHFKNGLCSCRDFW 487



 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 56/170 (32%), Positives = 92/170 (54%), Gaps = 5/170 (2%)

Query: 170 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKC----GDLED 225
           PN  +   VL  C+ + +L LGK VH  V K     +      L+ MYC C    G +E 
Sbjct: 8   PNKFTYPFVLKACAGIGNLNLGKSVHGSVMKFGFGDEVNVQNTLVHMYCCCRGGEGGIEF 67

Query: 226 ACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNH 285
           A K+F E+ + D V+W+AMI GY + G+   A+ LF +M+ +G+ PD IT V++L AC  
Sbjct: 68  ARKVFDEMYKSDSVSWSAMIGGYVRVGRSSDAINLFREMQIKGVCPDEITMVSVLSACTG 127

Query: 286 AGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335
            G ++LG ++ +S V    +    +    ++D+  + G + +A +L + M
Sbjct: 128 LGALELG-KWVESYVEKERVQKNVELSNALIDMFAKCGDVDKATNLFRSM 176



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 60/283 (21%), Positives = 110/283 (38%), Gaps = 51/283 (18%)

Query: 44  MLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP------ 97
           M  C       +  A   F  +   D+ SW+ MI G+V+    + A +LF  M       
Sbjct: 54  MYCCCRGGEGGIEFARKVFDEMYKSDSVSWSAMIGGYVRVGRSSDAINLFREMQIKGVCP 113

Query: 98  ---------------------------------EKNSVSWSAMISGYIECGQLDKAVELF 124
                                            +KN    +A+I  + +CG +DKA  LF
Sbjct: 114 DEITMVSVLSACTGLGALELGKWVESYVEKERVQKNVELSNALIDMFAKCGDVDKATNLF 173

Query: 125 KVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSH 184
           +    +++V+WT++I G    G        + + +   M+  G+ P+      +L  CSH
Sbjct: 174 RSMRERNIVSWTSVIGGLAMHGR-----GVEAVAVFEEMVRSGVTPDDVVFIGLLSACSH 228

Query: 185 LSSLQLGKQVHQLVFKS-PLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ-RKDVVTWN 242
              +  GK+    + K   +         ++ M C+ G +++A K   E+    + V W 
Sbjct: 229 SGLVDKGKRYFDSMRKDFSIVPKIEHYGCMVDMLCRAGLVKEALKFVQEMPIDPNPVVWR 288

Query: 243 AMISGYAQHGK---GEKALRLFDKMKDEGMKPDSITFVALLLA 282
            +I+    HG+   GEK  R    +++E M   +   ++ + A
Sbjct: 289 TLINACRAHGELKLGEKITRQL--IRNEPMHESNYVLLSNIYA 329


>gi|218184628|gb|EEC67055.1| hypothetical protein OsI_33800 [Oryza sativa Indica Group]
          Length = 513

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 185/441 (41%), Positives = 277/441 (62%), Gaps = 7/441 (1%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI 164
           SA++  Y  CG++D A+ +F     K+ V+W A+I+G+ + G  E +     L +   M 
Sbjct: 80  SALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKGDGETT-----LLMFAEMQ 134

Query: 165 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 224
             G      + SSV    + + +L+ GK VH  + KS           ++ MY K G + 
Sbjct: 135 RNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVGNTILDMYAKSGSMI 194

Query: 225 DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 284
           DA K+F  + +KD+VTWN+M++ +AQ+G G +A+  F++M+  G+  + ITF+++L AC+
Sbjct: 195 DARKVFDHVDKKDLVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQITFLSILTACS 254

Query: 285 HAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIF 344
           H GLV  G QYFD M+ ++ +  + DHY  +VDLLGRAG L +A+  I KMP KP  A++
Sbjct: 255 HGGLVKEGKQYFD-MMKEHNLEPEIDHYVTVVDLLGRAGLLNDALVFIFKMPMKPTAAVW 313

Query: 345 GTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKE 404
           G LL +CR+HK   + +FAA ++F L+P +  G  V L NIYA+  +WD  AR+R  MK 
Sbjct: 314 GALLGSCRMHKNAKIGQFAADHVFELDPDDT-GPPVLLYNIYASTGQWDAAARVRKMMKA 372

Query: 405 NNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHA 464
             V K P  SW+E+   VH F + D  HP    I++K +E+  +++ AGYVP+ ++ L  
Sbjct: 373 TGVKKEPACSWVEIENSVHMFVANDDTHPRSEEIYKKWEEISIQIRKAGYVPNTDYVLLH 432

Query: 465 VGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREII 524
           V E+ ++  L +HSEK+A+AF LI +PLG  IR+ KN+R+CGDCH A +YIS + +REI+
Sbjct: 433 VDEQERQAKLQYHSEKIALAFALINMPLGATIRIMKNIRICGDCHSAFRYISKVFEREIV 492

Query: 525 VRDTTRFHHFKDGTCSCGDYW 545
           VRDT RFHHF  G+CSCGDYW
Sbjct: 493 VRDTNRFHHFSSGSCSCGDYW 513



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 52/200 (26%), Positives = 103/200 (51%), Gaps = 6/200 (3%)

Query: 129 VKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSL 188
            + + +WT++I+GY      +N   ++ L LL  M+    +PN  + +S+L      +S 
Sbjct: 3   TRDMCSWTSLIAGY-----AQNDMPDEALGLLLGMLRGRFKPNGFTFASLLKAAGASASS 57

Query: 189 QLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGY 248
            +G+Q+H L  K     D    + L+ MY +CG ++ A  +F +++ K+ V+WNA+I+G+
Sbjct: 58  GIGEQIHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGF 117

Query: 249 AQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK 308
           A+ G GE  L +F +M+  G +    T+ ++  A    G ++ G      M+   G    
Sbjct: 118 ARKGDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKS-GERLS 176

Query: 309 PDHYTCMVDLLGRAGKLVEA 328
                 ++D+  ++G +++A
Sbjct: 177 AFVGNTILDMYAKSGSMIDA 196


>gi|413934702|gb|AFW69253.1| hypothetical protein ZEAMMB73_589560 [Zea mays]
          Length = 664

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 185/474 (39%), Positives = 290/474 (61%), Gaps = 8/474 (1%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVV 133
           N++IS +V   ++  AR +F  M  K+ +SW++++  Y     +  A E+F + PVK +V
Sbjct: 197 NSLISAYVACGDVGAARKVFDEMLVKDVISWTSIVVAYSRIRDMGSAEEVFALCPVKDMV 256

Query: 134 AWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ 193
           AWTAM++GY      +N+     L+    M   G+  +  SL+  +  C+ L +++    
Sbjct: 257 AWTAMVTGY-----AQNAMPVKALEAFEQMAVAGMPIDEVSLTGAISACAQLGAVKRAAW 311

Query: 194 VHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGK 253
           V ++  ++ L ++    + L+ MY KCG +++A K+F  +  K+V T+++MI G A HG+
Sbjct: 312 VQEIAERNGLGRNVVVGSGLVDMYAKCGLIDEARKVFEGMHDKNVYTYSSMIVGLASHGR 371

Query: 254 GEKALRLFDKM-KDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY 312
               + LF+ M +   ++P+ +TF+ +L AC+HAG+V  G  YF  M + YGI    DHY
Sbjct: 372 ANDVIALFNDMVRRADVEPNHVTFIGVLTACSHAGMVKEGRYYFAQMKDRYGILPSADHY 431

Query: 313 TCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNP 372
            CMVDLL R+G + EA+DL+K M  +P   ++G LL ACR+H   ++A+ AA +LF L P
Sbjct: 432 ACMVDLLARSGLVTEALDLVKSMTVEPHGGVWGALLGACRIHGNTEVAKIAAEHLFRLEP 491

Query: 373 ANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIE-VGTVVHEFRSGDRV 431
               G YV L+N  A+  +WD+V+++R  M+   + K P  SW E     VH+F +GD  
Sbjct: 492 -EGIGNYVLLSNTLASAGEWDEVSKLRKLMRIRGLKKDPAVSWFEGRDGFVHQFFAGDNT 550

Query: 432 HPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVP 491
           HP +  I ++L EL +++ LAGYVP L   ++ V EE KE+LL+ HSEKLA++FGL+ + 
Sbjct: 551 HPSMHEIKKRLLELREKLNLAGYVPILSSVVYNVSEEEKERLLMGHSEKLALSFGLLTLE 610

Query: 492 LGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
             + IR+ KNLR+C DCH   + +S +E  EI+VRD  RFHHF+DG CSCG +W
Sbjct: 611 SRSSIRIVKNLRICEDCHLFIRLVSKVEPIEILVRDNMRFHHFRDGECSCGGFW 664



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 65/270 (24%), Positives = 119/270 (44%), Gaps = 22/270 (8%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M VK  ++W S++  +++ R  +  A+E+F   P  D+V++  M++    N+  V A   
Sbjct: 219 MLVKDVISWTSIVVAYSRIR-DMGSAEEVFALCPVKDMVAWTAMVTGYAQNAMPVKALEA 277

Query: 61  FFQR----LPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNS-----VSWSAMISGY 111
           F Q     +PI D  S    IS   Q   + +A      + E+N      V  S ++  Y
Sbjct: 278 FEQMAVAGMPI-DEVSLTGAISACAQLGAVKRA-AWVQEIAERNGLGRNVVVGSGLVDMY 335

Query: 112 IECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLG-IRP 170
            +CG +D+A ++F+    K+V  +++MI G    G      A D + L   M+    + P
Sbjct: 336 AKCGLIDEARKVFEGMHDKNVYTYSSMIVGLASHGR-----ANDVIALFNDMVRRADVEP 390

Query: 171 NASSLSSVLLGCSHLSSLQLGKQVH-QLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 229
           N  +   VL  CSH   ++ G+    Q+  +  +         ++ +  + G + +A  L
Sbjct: 391 NHVTFIGVLTACSHAGMVKEGRYYFAQMKDRYGILPSADHYACMVDLLARSGLVTEALDL 450

Query: 230 F--LEIQRKDVVTWNAMISGYAQHGKGEKA 257
              + ++    V W A++     HG  E A
Sbjct: 451 VKSMTVEPHGGV-WGALLGACRIHGNTEVA 479


>gi|15229194|ref|NP_190540.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75183401|sp|Q9M2Y7.1|PP274_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g49710
 gi|6723416|emb|CAB66909.1| putative protein [Arabidopsis thaliana]
 gi|332645058|gb|AEE78579.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 721

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 218/531 (41%), Positives = 296/531 (55%), Gaps = 51/531 (9%)

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP----------------------- 97
           F+    ++D  SWN+MI  + Q K  AKA  L+  M                        
Sbjct: 196 FYGMDELRDEVSWNSMIVAYGQHKEGAKALALYKEMIFKGFKIDMFTLASVLNALTSLDH 255

Query: 98  ----------------EKNSVSWSAMISGYIECGQLD---KAVELFKVAPVKSVVAWTAM 138
                            +NS   S +I  Y +CG  D    + ++F+      +V W  M
Sbjct: 256 LIGGRQFHGKLIKAGFHQNSHVGSGLIDFYSKCGGCDGMYDSEKVFQEILSPDLVVWNTM 315

Query: 139 ISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLV 198
           ISGY     +    +E+ +K  R M  +G RP+  S   V   CS+LSS    KQ+H L 
Sbjct: 316 ISGYS----MNEELSEEAVKSFRQMQRIGHRPDDCSFVCVTSACSNLSSPSQCKQIHGLA 371

Query: 199 FKSPLCKDTTALT-PLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKA 257
            KS +  +  ++   LIS+Y K G+L+DA  +F  +   + V++N MI GYAQHG G +A
Sbjct: 372 IKSHIPSNRISVNNALISLYYKSGNLQDARWVFDRMPELNAVSFNCMIKGYAQHGHGTEA 431

Query: 258 LRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVD 317
           L L+ +M D G+ P+ ITFVA+L AC H G VD G +YF++M   + I  + +HY+CM+D
Sbjct: 432 LLLYQRMLDSGIAPNKITFVAVLSACAHCGKVDEGQEYFNTMKETFKIEPEAEHYSCMID 491

Query: 318 LLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAG 377
           LLGRAGKL EA   I  MP+KP    +  LL ACR HK + LAE AA  L  + P  AA 
Sbjct: 492 LLGRAGKLEEAERFIDAMPYKPGSVAWAALLGACRKHKNMALAERAANELMVMQPL-AAT 550

Query: 378 CYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVS 437
            YV LAN+YA  +KW+++A +R SM+   + K PG SWIEV    H F + D  HP +  
Sbjct: 551 PYVMLANMYADARKWEEMASVRKSMRGKRIRKKPGCSWIEVKKKKHVFVAEDWSHPMIRE 610

Query: 438 IHEKLKELEKRMKLAGYVPDLEFAL---HAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGT 494
           ++E L+E+ K+MK  GYV D ++A+      GE  +E  L  HSEKLA+AFGL+    G 
Sbjct: 611 VNEYLEEMMKKMKKVGYVMDKKWAMVKEDEAGEGDEEMRLGHHSEKLAVAFGLMSTRDGE 670

Query: 495 PIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
            + V KNLR+CGDCH A K++SA+  REIIVRD  RFH FKDG CSCGDYW
Sbjct: 671 ELVVVKNLRICGDCHNAIKFMSAVAGREIIVRDNLRFHCFKDGKCSCGDYW 721



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 93/340 (27%), Positives = 171/340 (50%), Gaps = 18/340 (5%)

Query: 8   NWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPI 67
           ++N ++  +AK   K+  A++LFD+IPQPD VSYN ++S    ++ +  AA   F+R+  
Sbjct: 76  SYNVIVKAYAKD-SKIHIARQLFDEIPQPDTVSYNTLISG-YADARETFAAMVLFKRMRK 133

Query: 68  ----KDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSW--SAMISGYIECGQLDKAV 121
                D  + + +I+    + ++ K    F      +S S   +A ++ Y + G L +AV
Sbjct: 134 LGFEVDGFTLSGLIAACCDRVDLIKQLHCFSVSGGFDSYSSVNNAFVTYYSKGGLLREAV 193

Query: 122 ELF-KVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLL 180
            +F  +  ++  V+W +MI       Y ++      L L + MI  G + +  +L+SVL 
Sbjct: 194 SVFYGMDELRDEVSWNSMI-----VAYGQHKEGAKALALYKEMIFKGFKIDMFTLASVLN 248

Query: 181 GCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE---DACKLFLEIQRKD 237
             + L  L  G+Q H  + K+   +++   + LI  Y KCG  +   D+ K+F EI   D
Sbjct: 249 ALTSLDHLIGGRQFHGKLIKAGFHQNSHVGSGLIDFYSKCGGCDGMYDSEKVFQEILSPD 308

Query: 238 VVTWNAMISGYAQHGK-GEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYF 296
           +V WN MISGY+ + +  E+A++ F +M+  G +PD  +FV +  AC++        Q  
Sbjct: 309 LVVWNTMISGYSMNEELSEEAVKSFRQMQRIGHRPDDCSFVCVTSACSNLSSPSQCKQIH 368

Query: 297 DSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 336
              +  +  + +      ++ L  ++G L +A  +  +MP
Sbjct: 369 GLAIKSHIPSNRISVNNALISLYYKSGNLQDARWVFDRMP 408



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/287 (23%), Positives = 127/287 (44%), Gaps = 11/287 (3%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVV 133
           N  ++ + +   ++ AR  F +  E N  S++ ++  Y +  ++  A +LF   P    V
Sbjct: 47  NHFVNLYSKCGRLSYARAAFYSTEEPNVFSYNVIVKAYAKDSKIHIARQLFDEIPQPDTV 106

Query: 134 AWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ 193
           ++  +ISGY        ++A   + L + M  LG   +  +LS ++  C     + L KQ
Sbjct: 107 SYNTLISGYAD---ARETFA--AMVLFKRMRKLGFEVDGFTLSGLIAAC--CDRVDLIKQ 159

Query: 194 VHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR-KDVVTWNAMISGYAQHG 252
           +H           ++     ++ Y K G L +A  +F  +   +D V+WN+MI  Y QH 
Sbjct: 160 LHCFSVSGGFDSYSSVNNAFVTYYSKGGLLREAVSVFYGMDELRDEVSWNSMIVAYGQHK 219

Query: 253 KGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY 312
           +G KAL L+ +M  +G K D  T  ++L A      +  G Q+   ++   G        
Sbjct: 220 EGAKALALYKEMIFKGFKIDMFTLASVLNALTSLDHLIGGRQFHGKLIKA-GFHQNSHVG 278

Query: 313 TCMVDLLGRAGKLVEAVDLIK--KMPFKPQPAIFGTLLSACRVHKRL 357
           + ++D   + G      D  K  +    P   ++ T++S   +++ L
Sbjct: 279 SGLIDFYSKCGGCDGMYDSEKVFQEILSPDLVVWNTMISGYSMNEEL 325



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 77/353 (21%), Positives = 128/353 (36%), Gaps = 111/353 (31%)

Query: 23  LKDAQELFDKIPQPDVVSYNIMLSCILLN---SDDVVAAFDFFQRL-------------- 65
           + D++++F +I  PD+V +N M+S   +N   S++ V +F   QR+              
Sbjct: 294 MYDSEKVFQEILSPDLVVWNTMISGYSMNEELSEEAVKSFRQMQRIGHRPDDCSFVCVTS 353

Query: 66  -----------------------PIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSV 102
                                  P    +  N +IS + +  N+  AR +F  MPE N+V
Sbjct: 354 ACSNLSSPSQCKQIHGLAIKSHIPSNRISVNNALISLYYKSGNLQDARWVFDRMPELNAV 413

Query: 103 SWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRM 162
           S++ MI GY + G                                       + L L + 
Sbjct: 414 SFNCMIKGYAQHGH------------------------------------GTEALLLYQR 437

Query: 163 MIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGD 222
           M+  GI PN  +  +VL  C+H   +  G++    +      K+T  + P    Y     
Sbjct: 438 MLDSGIAPNKITFVAVLSACAHCGKVDEGQEYFNTM------KETFKIEPEAEHY----- 486

Query: 223 LEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA 282
                              + MI    + GK E+A R  D M     KP S+ + ALL A
Sbjct: 487 -------------------SCMIDLLGRAGKLEEAERFIDAMP---YKPGSVAWAALLGA 524

Query: 283 CNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335
           C     + L  +  + ++    +AA P  Y  + ++   A K  E   + K M
Sbjct: 525 CRKHKNMALAERAANELMVMQPLAATP--YVMLANMYADARKWEEMASVRKSM 575



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/203 (25%), Positives = 81/203 (39%), Gaps = 42/203 (20%)

Query: 188 LQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLED---------------------- 225
           L  GK +H L  KS +   T      +++Y KCG L                        
Sbjct: 24  LFTGKSLHALYVKSIVASSTYLSNHFVNLYSKCGRLSYARAAFYSTEEPNVFSYNVIVKA 83

Query: 226 ---------ACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITF 276
                    A +LF EI + D V++N +ISGYA   +   A+ LF +M+  G + D  T 
Sbjct: 84  YAKDSKIHIARQLFDEIPQPDTVSYNTLISGYADARETFAAMVLFKRMRKLGFEVDGFTL 143

Query: 277 VALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCM----VDLLGRAGKLVEAVDLI 332
             L+ AC     VDL  Q     ++ + ++   D Y+ +    V    + G L EAV + 
Sbjct: 144 SGLIAAC--CDRVDLIKQ-----LHCFSVSGGFDSYSSVNNAFVTYYSKGGLLREAVSVF 196

Query: 333 KKMPFKPQPAIFGTLLSACRVHK 355
             M        + +++ A   HK
Sbjct: 197 YGMDELRDEVSWNSMIVAYGQHK 219


>gi|449457327|ref|XP_004146400.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Cucumis sativus]
          Length = 720

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 211/524 (40%), Positives = 296/524 (56%), Gaps = 52/524 (9%)

Query: 68  KDTASWNTMISGFVQKKNMAKARDLFLAMP------------------------------ 97
           +D  SWN+M+  ++Q +  +KA +L+L M                               
Sbjct: 203 RDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIVDIFTLASVLTAFTNVQDLLGGLQF 262

Query: 98  ---------EKNSVSWSAMISGYIECG--QLDKAVELFKVAPVKSVVAWTAMISGYMKFG 146
                     +NS   S +I  Y +CG   LD   ++F       +V W  MISGY  + 
Sbjct: 263 HAKLIKSGYHQNSHVGSGLIDLYSKCGGCMLD-CRKVFDEISNPDLVLWNTMISGYSLY- 320

Query: 147 YVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKD 206
                 +++ L+  R +  +G RP+  SL  V+  CS++SS   G+QVH L  K  +  +
Sbjct: 321 ---EDLSDEALECFRQLQVVGHRPDDCSLVCVISACSNMSSPSQGRQVHGLALKLDIPSN 377

Query: 207 TTALT-PLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMK 265
             ++   LI+MY KCG+L DA  LF  +   + V++N+MI+GYAQHG G ++L LF +M 
Sbjct: 378 RISVNNALIAMYSKCGNLRDAKTLFDTMPEHNTVSYNSMIAGYAQHGMGFQSLHLFQRML 437

Query: 266 DEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKL 325
           + G  P +ITF+++L AC H G V+ G  YF+ M   +GI  +  H++CM+DLLGRAGKL
Sbjct: 438 EMGFTPTNITFISVLAACAHTGRVEDGKIYFNMMKQKFGIEPEAGHFSCMIDLLGRAGKL 497

Query: 326 VEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANI 385
            EA  LI+ +PF P    +  LL ACR+H  ++LA  AA  L  L+P NAA  YV LANI
Sbjct: 498 SEAERLIETIPFDPGFFFWSALLGACRIHGNVELAIKAANRLLQLDPLNAAP-YVMLANI 556

Query: 386 YAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKEL 445
           Y+   +  D A +R  M++  V K PG SWIEV   +H F + D  HP +  I E L+E+
Sbjct: 557 YSDNGRLQDAASVRKLMRDRGVKKKPGCSWIEVNRRIHIFVAEDTFHPMIKKIQEYLEEM 616

Query: 446 EKRMKLAGYVPDLEFALHAVGEEV---KEQLLL-FHSEKLAIAFGLIKVPLGTPIRVFKN 501
            +++K  GY P++  AL    + V   +E+L L  HSEKLA++FGL+    G PI VFKN
Sbjct: 617 MRKIKKVGYTPEVRSALVGGDDRVWQREEELRLGHHSEKLAVSFGLMSTREGEPILVFKN 676

Query: 502 LRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           LR+C DCH A KYIS + KREI VRD+ RFH FKDG CSCG YW
Sbjct: 677 LRICVDCHNAIKYISEVVKREITVRDSHRFHCFKDGQCSCGGYW 720



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 84/338 (24%), Positives = 146/338 (43%), Gaps = 80/338 (23%)

Query: 72  SWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELF------- 124
           S+NT+IS + ++  +  A  LF  MP+ +SVS++ +I+ Y   G    A +LF       
Sbjct: 76  SFNTLISAYAKESYVEVAHQLFDEMPQPDSVSYNTLIAAYARRGDTQPAFQLFLEMREAF 135

Query: 125 -----------------KVAPVKSVVAWT-------------AMISGYMKFGYV------ 148
                             V  ++ + A +             A+I+ Y K G++      
Sbjct: 136 LDMDGFTLSGIITACGINVGLIRQLHALSVVTGLDSYVSVGNALITSYSKNGFLKEARRI 195

Query: 149 ---------ENSW---------AEDGLKLLRMMIGLGIRP---NASSLSSVLLGCSHLSS 187
                    E SW           +G K L + + + +R    +  +L+SVL   +++  
Sbjct: 196 FHWLSEDRDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIVDIFTLASVLTAFTNVQD 255

Query: 188 LQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGD-LEDACKLFLEIQRKDVVTWNAMIS 246
           L  G Q H  + KS   +++   + LI +Y KCG  + D  K+F EI   D+V WN MIS
Sbjct: 256 LLGGLQFHAKLIKSGYHQNSHVGSGLIDLYSKCGGCMLDCRKVFDEISNPDLVLWNTMIS 315

Query: 247 GYAQHGK-GEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGI 305
           GY+ +    ++AL  F +++  G +PD  + V ++ AC++      G Q        +G+
Sbjct: 316 GYSLYEDLSDEALECFRQLQVVGHRPDDCSLVCVISACSNMSSPSQGRQV-------HGL 368

Query: 306 AAKPDHYT-------CMVDLLGRAGKLVEAVDLIKKMP 336
           A K D  +        ++ +  + G L +A  L   MP
Sbjct: 369 ALKLDIPSNRISVNNALIAMYSKCGNLRDAKTLFDTMP 406



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 63/275 (22%), Positives = 131/275 (47%), Gaps = 9/275 (3%)

Query: 84  KNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYM 143
           + ++ AR +F    + N  S++ +IS Y +   ++ A +LF   P    V++  +I+ Y 
Sbjct: 57  RRLSAARRVFDHTHDCNVFSFNTLISAYAKESYVEVAHQLFDEMPQPDSVSYNTLIAAYA 116

Query: 144 KFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPL 203
           + G  + ++     +L   M    +  +  +LS ++  C    ++ L +Q+H L   + L
Sbjct: 117 RRGDTQPAF-----QLFLEMREAFLDMDGFTLSGIITACG--INVGLIRQLHALSVVTGL 169

Query: 204 CKDTTALTPLISMYCKCGDLEDACKLFLEI-QRKDVVTWNAMISGYAQHGKGEKALRLFD 262
               +    LI+ Y K G L++A ++F  + + +D V+WN+M+  Y QH +G KAL L+ 
Sbjct: 170 DSYVSVGNALITSYSKNGFLKEARRIFHWLSEDRDEVSWNSMVVAYMQHREGSKALELYL 229

Query: 263 KMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRA 322
           +M   G+  D  T  ++L A  +   +  G+Q+   ++   G        + ++DL  + 
Sbjct: 230 EMTVRGLIVDIFTLASVLTAFTNVQDLLGGLQFHAKLIKS-GYHQNSHVGSGLIDLYSKC 288

Query: 323 GKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRL 357
           G  +     +      P   ++ T++S   +++ L
Sbjct: 289 GGCMLDCRKVFDEISNPDLVLWNTMISGYSLYEDL 323



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 54/112 (48%), Gaps = 4/112 (3%)

Query: 188 LQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISG 247
           L+ GK +H L  KS +   T      + +Y KC  L  A ++F      +V ++N +IS 
Sbjct: 24  LRTGKSLHALYIKSFVPTSTYLSNHFLLLYSKCRRLSAARRVFDHTHDCNVFSFNTLISA 83

Query: 248 YAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSM 299
           YA+    E A +LFD+M     +PDS+++  L+ A    G      Q F  M
Sbjct: 84  YAKESYVEVAHQLFDEMP----QPDSVSYNTLIAAYARRGDTQPAFQLFLEM 131



 Score = 43.9 bits (102), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 71/155 (45%), Gaps = 11/155 (7%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQ 63
           + +VN N+++A ++K  G L+DA+ LFD +P+ + VSYN M++    +     +   F +
Sbjct: 378 RISVN-NALIAMYSKC-GNLRDAKTLFDTMPEHNTVSYNSMIAGYAQHGMGFQSLHLFQR 435

Query: 64  RLPIKDTASWNTMISGFVQKKNMAKARD---LFLAMPEKNSVS-----WSAMISGYIECG 115
            L +  T +  T IS      +  +  D    F  M +K  +      +S MI      G
Sbjct: 436 MLEMGFTPTNITFISVLAACAHTGRVEDGKIYFNMMKQKFGIEPEAGHFSCMIDLLGRAG 495

Query: 116 QLDKAVELFKVAPVK-SVVAWTAMISGYMKFGYVE 149
           +L +A  L +  P       W+A++      G VE
Sbjct: 496 KLSEAERLIETIPFDPGFFFWSALLGACRIHGNVE 530


>gi|413937223|gb|AFW71774.1| hypothetical protein ZEAMMB73_242527 [Zea mays]
          Length = 625

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 207/517 (40%), Positives = 289/517 (55%), Gaps = 43/517 (8%)

Query: 33  IPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDL 92
           +  P V +  + L C L    D    FD      + D  SWNTM+SG+ +  ++  AR++
Sbjct: 148 LAHPVVTNCLLKLYCALGMLSDARRVFDTSGATSL-DAFSWNTMVSGYGKCGDLEAAREV 206

Query: 93  FLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSW 152
           F+ MPE+  VSWSAMI   I  G+  +A+ +F                            
Sbjct: 207 FVRMPERGLVSWSAMIDACIRAGEFSEALRMFD--------------------------- 239

Query: 153 AEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCK--DTTAL 210
                     M+G G RP+A  LSSVL  C+HL +L+ G+ VH+ +    L +  D   L
Sbjct: 240 ---------QMMGNGFRPDAVVLSSVLKACAHLGALERGRWVHRFLKAEGLGRSPDNVML 290

Query: 211 -TPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGM 269
            T L+ MYCKCG +++A  +F  +Q +DVV WNAMI G A +G G++AL LF +M D G 
Sbjct: 291 ETALVDMYCKCGCMDEAWWVFDGVQSQDVVLWNAMIGGLAMNGHGKRALELFRRMLDMGF 350

Query: 270 KPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAV 329
            P+  TFV +L AC H G VD G + F SM  D+GI  + +HY C+ DLLGRAG L EA 
Sbjct: 351 VPNESTFVVVLCACTHTGRVDEGKEIFRSMC-DHGIEPRREHYGCLADLLGRAGLLEEAE 409

Query: 330 DLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAM 389
            ++  MP +P  + +G L+S+C +H  + + E     L  L P +  G YV L N+YA  
Sbjct: 410 AVLLDMPMEPHASQWGALMSSCLMHNNVGVGERVGKKLIELEP-DDGGRYVVLFNLYAVN 468

Query: 390 KKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRM 449
             W+D   +R  M+E    K  G S+IE   +VHEFRSGD  HP+   I+  L+++E+R+
Sbjct: 469 GLWEDAKALRKMMEERGAKKETGLSFIEWNGLVHEFRSGDTRHPQTRQIYALLEDMEQRL 528

Query: 450 KLAGYVPDLEFALHAV-GEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDC 508
           +L GYV D    L  +  EE K   L +HSE+LA+AFG++  P   PIR+ KNLRVC DC
Sbjct: 529 QLIGYVKDTSQVLMDMDDEEDKGNTLSYHSERLALAFGILNTPRHMPIRIVKNLRVCRDC 588

Query: 509 HRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           H   K +S + +REII+RD  RFH F+ G CSC D+W
Sbjct: 589 HVYAKLVSKLYQREIIMRDRHRFHLFRGGVCSCNDFW 625


>gi|357167803|ref|XP_003581340.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Brachypodium distachyon]
          Length = 940

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 198/524 (37%), Positives = 289/524 (55%), Gaps = 47/524 (8%)

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISG----------- 110
           F R+ IKD  SW T+I+ + Q     +A ++F    +K  +    M+ G           
Sbjct: 424 FDRMRIKDHISWTTIITCYAQSSRHIEALEIFRE-AQKEGIKVDPMMIGSILEACSGLET 482

Query: 111 ----------------------------YIECGQLDKAVELFKVAPVKSVVAWTAMISGY 142
                                       Y ECG++  ++++F+    K +V WT+MI+ Y
Sbjct: 483 ILLAKQLHCYAIRNGLLDLVVKNRIIDIYGECGEVYHSLKMFETVEQKDIVTWTSMINCY 542

Query: 143 MKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSP 202
              G +      + L L   M    ++P++ +L S+L     LSSL  GK+VH  + +  
Sbjct: 543 ANSGLLN-----EALVLFAEMQSTDVQPDSVALVSILGAIGGLSSLAKGKEVHGFLIRRN 597

Query: 203 LCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFD 262
              +   ++ L+ MY  CG L  A K+F  ++ KD+V W AMI+    HG G++A+ LF 
Sbjct: 598 FHMEEAIVSSLVDMYSGCGSLSGALKVFNAVKCKDMVLWTAMINATGMHGHGKQAIDLFK 657

Query: 263 KMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRA 322
           +M   G+ PD ++F+ALL AC+H+ LV+ G  Y D M++ Y +    +HY C+VDLLGR+
Sbjct: 658 RMLQTGVTPDHVSFLALLYACSHSKLVNEGKCYLDMMMSTYRLEPWQEHYACVVDLLGRS 717

Query: 323 GKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQL 382
           G+  EA + IK MP KP+  ++ +LL ACRVHK  +LA  AA  L  L P N  G YV +
Sbjct: 718 GQTEEAYEFIKSMPLKPKSVVWCSLLGACRVHKNHELAVVAANRLLELEPDN-PGNYVLV 776

Query: 383 ANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKL 442
           +N++A M KW++   +R  + E  + K P  SWIE+G  VH F + D  H +   I+ KL
Sbjct: 777 SNVFAEMGKWNNAKEVRARISERGLRKDPACSWIEIGNNVHTFTTRDNSHRDAERINLKL 836

Query: 443 KELEKRM-KLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKN 501
            E+ +R+ K  GY  D    LH V EE K  +L  HSE+LAI+FGLI    G P+R+ KN
Sbjct: 837 AEITERLRKEGGYTEDTRSVLHDVSEEEKVDVLHRHSERLAISFGLINTRPGMPLRIAKN 896

Query: 502 LRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           LRVCGDCH  TK +S +  R+I+VRD  RFHHF  G+CSCGD+W
Sbjct: 897 LRVCGDCHEFTKLVSKLFDRDIVVRDANRFHHFSGGSCSCGDFW 940



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 97/389 (24%), Positives = 183/389 (47%), Gaps = 51/389 (13%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQP-DVVSYNIMLSCILLNSDDVVAAFDFF 62
           ++T   N+++A +AK  G L  A  +F+ +    DV S+N M+S  L N    + A D F
Sbjct: 197 RSTFVANALIAMYAKC-GILDSAMRVFELMHDGRDVASWNSMISGCLQNGM-FLQALDLF 254

Query: 63  QRL--PIKDTASWNTM--ISGFVQKKNMAKARDLFLAMPEKNS---VSWSAMISGYIECG 115
           + +   +    S+ T+  +    +   +   R+L  A+ +  S   +  +A++  Y +CG
Sbjct: 255 RGMQRAVLSMNSYTTVGVLQVCTELAQLNLGRELHAALLKSGSEVNIQCNALLVMYTKCG 314

Query: 116 QLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSL 175
           ++D A+ +F+    K  ++W +M+S Y     V+N    + ++ +  M+  G +P+ + +
Sbjct: 315 RVDSALRVFREIDEKDYISWNSMLSCY-----VQNGLYAEAIEFISEMLRGGFQPDHACI 369

Query: 176 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR 235
            S+     HL  L  GK+VH    K  L  DT     L+ MY KC  +E +  +F  ++ 
Sbjct: 370 VSLSSAVGHLGWLLNGKEVHAYAIKQRLDSDTQVGNTLMDMYMKCRYIEYSAHVFDRMRI 429

Query: 236 KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN----------- 284
           KD ++W  +I+ YAQ  +  +AL +F + + EG+K D +   ++L AC+           
Sbjct: 430 KDHISWTTIITCYAQSSRHIEALEIFREAQKEGIKVDPMMIGSILEACSGLETILLAKQL 489

Query: 285 -----HAGLVDLGIQYFDSMVNDYGIAAKPDH---------------YTCMVDLLGRAGK 324
                  GL+DL ++  + +++ YG   +  H               +T M++    +G 
Sbjct: 490 HCYAIRNGLLDLVVK--NRIIDIYGECGEVYHSLKMFETVEQKDIVTWTSMINCYANSGL 547

Query: 325 LVEAVDLIKKMP---FKPQPAIFGTLLSA 350
           L EA+ L  +M     +P      ++L A
Sbjct: 548 LNEALVLFAEMQSTDVQPDSVALVSILGA 576



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 59/183 (32%), Positives = 93/183 (50%), Gaps = 3/183 (1%)

Query: 111 YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRP 170
           Y +CG++  A  LF     ++V +W A+I  Y+  G    +      + +R+    G+ P
Sbjct: 105 YGKCGRVADARLLFDGMSSRTVFSWNALIGAYLSSGSACEALGV--YRAMRLSAASGVAP 162

Query: 171 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 230
           +  +L+SVL         + G +VH L  K  L + T     LI+MY KCG L+ A ++F
Sbjct: 163 DGCTLASVLKASGVEGDGRCGCEVHGLAVKHGLDRSTFVANALIAMYAKCGILDSAMRVF 222

Query: 231 -LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLV 289
            L    +DV +WN+MISG  Q+G   +AL LF  M+   +  +S T V +L  C     +
Sbjct: 223 ELMHDGRDVASWNSMISGCLQNGMFLQALDLFRGMQRAVLSMNSYTTVGVLQVCTELAQL 282

Query: 290 DLG 292
           +LG
Sbjct: 283 NLG 285



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 73/166 (43%), Gaps = 6/166 (3%)

Query: 191 GKQVH-QLVFKSPLCKDTTAL-TPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGY 248
           G QVH   V    L  D   L T L+ MY KCG + DA  LF  +  + V +WNA+I  Y
Sbjct: 77  GVQVHAHAVATGSLEGDDGFLATKLLFMYGKCGRVADARLLFDGMSSRTVFSWNALIGAY 136

Query: 249 AQHGKGEKALRLFDKMK---DEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGI 305
              G   +AL ++  M+     G+ PD  T  ++L A    G    G +     V  +G+
Sbjct: 137 LSSGSACEALGVYRAMRLSAASGVAPDGCTLASVLKASGVEGDGRCGCEVHGLAVK-HGL 195

Query: 306 AAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSAC 351
                    ++ +  + G L  A+ + + M      A + +++S C
Sbjct: 196 DRSTFVANALIAMYAKCGILDSAMRVFELMHDGRDVASWNSMISGC 241


>gi|356557279|ref|XP_003546945.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Glycine max]
          Length = 631

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 210/561 (37%), Positives = 312/561 (55%), Gaps = 32/561 (5%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           + +   ++  + L  F      L++A  LFDKIP+ ++  +N+++     N     A   
Sbjct: 87  LGIAYNLDLATKLVNFYSVCNSLRNAHHLFDKIPKGNLFLWNVLIRAYAWNGPHETAISL 146

Query: 61  FFQRLP-------------IKDTASWNTMISGFVQKKNMAKA---RDLFLAMPEKNSVSW 104
           + Q L              +K  ++ +T+  G V  + + ++   RD+F+          
Sbjct: 147 YHQMLEYGLKPDNFTLPFVLKACSALSTIGEGRVIHERVIRSGWERDVFVG--------- 197

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI 164
           +A++  Y +CG +  A  +F     +  V W +M++ Y + G+ + S     L L   M 
Sbjct: 198 AALVDMYAKCGCVVDARHVFDKIVDRDAVLWNSMLAAYAQNGHPDES-----LSLCCEMA 252

Query: 165 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 224
             G+RP  ++L +V+   + ++ L  G+++H   ++     +    T LI MY KCG ++
Sbjct: 253 AKGVRPTEATLVTVISSSADIACLPHGREIHGFGWRHGFQYNDKVKTALIDMYAKCGSVK 312

Query: 225 DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 284
            AC LF  ++ K VV+WNA+I+GYA HG   +AL LF++M  E  +PD ITFV  L AC+
Sbjct: 313 VACVLFERLREKRVVSWNAIITGYAMHGLAVEALDLFERMMKEA-QPDHITFVGALAACS 371

Query: 285 HAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIF 344
              L+D G   ++ MV D  I    +HYTCMVDLLG  G+L EA DLI++M   P   ++
Sbjct: 372 RGRLLDEGRALYNLMVRDCRINPTVEHYTCMVDLLGHCGQLDEAYDLIRQMDVMPDSGVW 431

Query: 345 GTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKE 404
           G LL++C+ H  ++LAE A   L  L P ++ G YV LAN+YA   KW+ VAR+R  M +
Sbjct: 432 GALLNSCKTHGNVELAEVALEKLIELEPDDS-GNYVILANMYAQSGKWEGVARLRQLMID 490

Query: 405 NNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHA 464
             + K    SWIEV   V+ F SGD  HP   +I+ +LK LE  M+ AGYVPD     H 
Sbjct: 491 KGIKKNIACSWIEVKNKVYAFLSGDVSHPNSGAIYAELKRLEGLMREAGYVPDTGSVFHD 550

Query: 465 VGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREII 524
           V E+ K  ++  HSE+LAIAFGLI    GT + + KNLR+C DCH A K+IS I +REI 
Sbjct: 551 VEEDEKTDMVCSHSERLAIAFGLISTLPGTRLLITKNLRICEDCHVAIKFISKITEREIT 610

Query: 525 VRDTTRFHHFKDGTCSCGDYW 545
           VRD  R+HHF+ G CSCGDYW
Sbjct: 611 VRDVNRYHHFRHGLCSCGDYW 631



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 83/170 (48%), Gaps = 11/170 (6%)

Query: 171 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 230
           N    +S+L  C    +L+ GKQ+H  + +  +  +    T L++ Y  C  L +A  LF
Sbjct: 57  NHYYYASLLESCISAKALEPGKQLHARLCQLGIAYNLDLATKLVNFYSVCNSLRNAHHLF 116

Query: 231 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVD 290
            +I + ++  WN +I  YA +G  E A+ L+ +M + G+KPD+ T   +L AC+    + 
Sbjct: 117 DKIPKGNLFLWNVLIRAYAWNGPHETAISLYHQMLEYGLKPDNFTLPFVLKACSALSTIG 176

Query: 291 LGIQYFDSMV-----NDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335
            G    + ++      D  + A       +VD+  + G +V+A  +  K+
Sbjct: 177 EGRVIHERVIRSGWERDVFVGAA------LVDMYAKCGCVVDARHVFDKI 220


>gi|148906747|gb|ABR16520.1| unknown [Picea sitchensis]
          Length = 644

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 189/428 (44%), Positives = 276/428 (64%), Gaps = 8/428 (1%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  +  V+WN+++AG+  Q G ++DA +LF +IP+ DV+++N M++       DV  A +
Sbjct: 224 MPQRDVVSWNAMIAGYV-QNGLIEDALKLFQEIPKRDVITWNTMMAG-YAQCGDVENAVE 281

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
            F+++P ++  SWNTMI+G+VQ  ++ +A  LF  MPE+N +SW+A+ISG+ + GQ+++A
Sbjct: 282 LFEKMPEQNLVSWNTMIAGYVQNGSVKEAFKLFQIMPERNVISWNAVISGFAQNGQVEEA 341

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLL 180
           ++LFK  P  +VV+W AMI+GY      +N  AE+ LKL   M  + ++PN  + + VL 
Sbjct: 342 LKLFKTMPECNVVSWNAMIAGY-----SQNGQAENALKLFGQMQMVDMKPNTETFAIVLP 396

Query: 181 GCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVT 240
            C+ L+ L+ G + H++V +S    D      L+ MY KCG +EDA K+F  ++++D  +
Sbjct: 397 ACAALAVLEQGNEAHEVVIRSGFQSDVLVGNTLVGMYAKCGSIEDARKVFDRMRQQDSAS 456

Query: 241 WNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV 300
            +AMI GYA +G  +++L LF++M+  G+KPD +TFV +L AC HAGLVD G QYFD M 
Sbjct: 457 LSAMIVGYAINGCSKESLELFEQMQFTGLKPDRVTFVGVLSACCHAGLVDEGRQYFDIMT 516

Query: 301 NDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLA 360
             Y I    +HY CM+DLLGRAG   EA DLI KMP KP   ++G+LLSACR H  +DL 
Sbjct: 517 RFYHITPAMEHYGCMIDLLGRAGCFDEANDLINKMPIKPDADMWGSLLSACRTHNNIDLG 576

Query: 361 EFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGT 420
           E  A +L  LNP N A  YV L+NIYAA  +WDD+  +R  MK+  V K  G SWI +  
Sbjct: 577 EKVAQHLIALNPQNPAP-YVLLSNIYAAAGRWDDIGSVRNRMKDRKVKKKLGCSWIVIKK 635

Query: 421 VVHEFRSG 428
            VH F  G
Sbjct: 636 QVHAFLVG 643



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 97/380 (25%), Positives = 192/380 (50%), Gaps = 26/380 (6%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M VK  V+W +++A +A+     ++A   F ++    +   +   + IL    D+    +
Sbjct: 126 MPVKNVVSWTAMIAAYARHEHG-QEALGFFYEMQDVGIQPNHFTFASILPACTDLEVLGE 184

Query: 61  FFQRLPIKDTAS----WNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQ 116
           F   +      S     N ++  + ++  +  AR+LF  MP+++ VSW+AMI+GY++ G 
Sbjct: 185 FHDEIVKGGFESNVFVGNGLVDMYAKRGCIEFARELFDKMPQRDVVSWNAMIAGYVQNGL 244

Query: 117 LDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLS 176
           ++ A++LF+  P + V+ W  M++GY + G VEN+     ++L   M       N  S +
Sbjct: 245 IEDALKLFQEIPKRDVITWNTMMAGYAQCGDVENA-----VELFEKM----PEQNLVSWN 295

Query: 177 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK 236
           +++ G     S++   ++ Q++ +    ++  +   +IS + + G +E+A KLF  +   
Sbjct: 296 TMIAGYVQNGSVKEAFKLFQIMPE----RNVISWNAVISGFAQNGQVEEALKLFKTMPEC 351

Query: 237 DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYF 296
           +VV+WNAMI+GY+Q+G+ E AL+LF +M+   MKP++ TF  +L AC    +++ G +  
Sbjct: 352 NVVSWNAMIAGYSQNGQAENALKLFGQMQMVDMKPNTETFAIVLPACAALAVLEQGNEAH 411

Query: 297 DSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPA----IFGTLLSACR 352
           + ++   G  +       +V +  + G + +A  +  +M  +   +    I G  ++ C 
Sbjct: 412 EVVIRS-GFQSDVLVGNTLVGMYAKCGSIEDARKVFDRMRQQDSASLSAMIVGYAINGC- 469

Query: 353 VHKRLDLAEFAAMNLFNLNP 372
              +  L  F  M    L P
Sbjct: 470 --SKESLELFEQMQFTGLKP 487



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 109/404 (26%), Positives = 190/404 (47%), Gaps = 44/404 (10%)

Query: 70  TASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSW-SAMISGYIECGQLDKAVELF 124
           ++++++++ G +  K++  A+ L   M     E   +S  + ++S Y++ G L +A  +F
Sbjct: 64  SSTYDSLLQGCLNAKSLPDAKLLHAHMIQTQFECQDISLGNKLVSIYVKLGSLVEARRVF 123

Query: 125 KVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSH 184
              PVK+VV+WTAMI+ Y +  +      ++ L     M  +GI+PN  + +S+L  C+ 
Sbjct: 124 DEMPVKNVVSWTAMIAAYARHEH-----GQEALGFFYEMQDVGIQPNHFTFASILPACTD 178

Query: 185 LSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAM 244
           L  L    + H  + K     +      L+ MY K G +E A +LF ++ ++DVV+WNAM
Sbjct: 179 LEVL---GEFHDEIVKGGFESNVFVGNGLVDMYAKRGCIEFARELFDKMPQRDVVSWNAM 235

Query: 245 ISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYG 304
           I+GY Q+G  E AL+LF ++     K D IT+  ++      G V+  ++ F+ M     
Sbjct: 236 IAGYVQNGLIEDALKLFQEIP----KRDVITWNTMMAGYAQCGDVENAVELFEKMPEQNL 291

Query: 305 IAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK---PQPAIFGTLLSACRVHKRLDLAE 361
           ++     +  M+    + G + EA  L + MP +      A+        +V + L L  
Sbjct: 292 VS-----WNTMIAGYVQNGSVKEAFKLFQIMPERNVISWNAVISGFAQNGQVEEALKL-- 344

Query: 362 FAAMNLFNLNPANA--AGCYVQLANIYAAMKKWDDVARIRLSMKENN---VVKMP---GY 413
           F  M   N+   NA  AG Y Q      A+K +  +  +   MK N     + +P     
Sbjct: 345 FKTMPECNVVSWNAMIAG-YSQNGQAENALKLFGQMQMV--DMKPNTETFAIVLPACAAL 401

Query: 414 SWIEVGTVVHE------FRSGDRVHPELVSIHEKLKELEKRMKL 451
           + +E G   HE      F+S   V   LV ++ K   +E   K+
Sbjct: 402 AVLEQGNEAHEVVIRSGFQSDVLVGNTLVGMYAKCGSIEDARKV 445



 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 63/183 (34%), Positives = 106/183 (57%), Gaps = 5/183 (2%)

Query: 155 DGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPL-CKDTTALTPL 213
           + L +L+ M+  GI P++S+  S+L GC +  SL   K +H  + ++   C+D +    L
Sbjct: 47  EALHILQDMVENGIWPHSSTYDSLLQGCLNAKSLPDAKLLHAHMIQTQFECQDISLGNKL 106

Query: 214 ISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDS 273
           +S+Y K G L +A ++F E+  K+VV+W AMI+ YA+H  G++AL  F +M+D G++P+ 
Sbjct: 107 VSIYVKLGSLVEARRVFDEMPVKNVVSWTAMIAAYARHEHGQEALGFFYEMQDVGIQPNH 166

Query: 274 ITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIK 333
            TF ++L AC    L  LG ++ D +V   G  +       +VD+  + G +  A +L  
Sbjct: 167 FTFASILPACTD--LEVLG-EFHDEIVKG-GFESNVFVGNGLVDMYAKRGCIEFARELFD 222

Query: 334 KMP 336
           KMP
Sbjct: 223 KMP 225


>gi|225444329|ref|XP_002264248.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290
           [Vitis vinifera]
          Length = 767

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 215/563 (38%), Positives = 326/563 (57%), Gaps = 47/563 (8%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQ 63
           +  V+WNS+++GF    G+ + A   F+     D+VS     S +  N   V+A      
Sbjct: 231 RDVVSWNSLISGFTLN-GEAERALRTFE-----DMVSEGT--SAVEPNRVTVIALLKSCA 282

Query: 64  RLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVEL 123
            L   +T+SW       V +   ++   L +A   K+ V  +A++  +  CG L  A E+
Sbjct: 283 ELGCVETSSW-------VHEYISSRHSSLLVA---KDVVVLTALLDMHARCGNLALAREI 332

Query: 124 FKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMM------IGLGIRPNASSLSS 177
           F     K+VV W+AMI+GY      + S  E+ L+L R M      +G+ ++PNA +L S
Sbjct: 333 FDGVEGKNVVCWSAMIAGYE-----QGSCPEEALRLFRQMLMEGNMVGVEVKPNAVTLVS 387

Query: 178 VLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR-- 235
           V+  CS L + +    +H+    + L +D    + LI M  KCGD+E   ++F E+    
Sbjct: 388 VIAACSRLGASRSASMIHKYAVATGLDQDARIASALIDMCAKCGDIEHGRQVFSEMDEST 447

Query: 236 KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQY 295
           + VV+W++MI     HG+G++AL LF +M+  G +P+ IT++++L AC+HAGLV+ G   
Sbjct: 448 RTVVSWSSMIGAEGIHGEGKRALELFSEMRTGGYEPNEITYISVLSACSHAGLVEQGKSC 507

Query: 296 FDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHK 355
           F+SM  DYG++    HY C+VDLLGRAG L EA ++I  MP K   A++G+LL+AC +H 
Sbjct: 508 FNSMEKDYGMSPTGKHYACLVDLLGRAGHLDEAHNVILNMPIKADLALWGSLLAACHLHG 567

Query: 356 RLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSW 415
              L E     + +L+ +N+ G +V LAN+Y    +WDDV R+R+ ++ + + K+PG S+
Sbjct: 568 NCKLGEIVEKKILSLD-SNSVGHHVLLANMYEDAGRWDDVVRMRVELRRSGLRKIPGQSF 626

Query: 416 IEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRM-KLAGYVPDLEFALHAVGEEVKEQLL 474
           IE+G  V+ F + DR HPE   I+++L  L++R+ K A YV   E  L+    ++   +L
Sbjct: 627 IEIGNEVYSFMAEDRSHPESEMIYKELDGLDERVRKAAKYVT--ETGLNVEDGDIAGLIL 684

Query: 475 L--FHSEKLAIAFGLIKVP----------LGTPIRVFKNLRVCGDCHRATKYISAIEKRE 522
              +HSE+LAIAFGLI +             TPIR+ KNLRVC DCH  TK +S +  RE
Sbjct: 685 RCKYHSERLAIAFGLIMIDRHSTCSCSLRTATPIRITKNLRVCRDCHAYTKLVSKVIDRE 744

Query: 523 IIVRDTTRFHHFKDGTCSCGDYW 545
           +IVRD  RFHHF+DG CSCGDYW
Sbjct: 745 LIVRDAHRFHHFRDGFCSCGDYW 767



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 96/351 (27%), Positives = 162/351 (46%), Gaps = 43/351 (12%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQ 63
           K T +WNS++A  A Q    + A   F ++    V S N     +L       A     +
Sbjct: 16  KDTFHWNSLIAKNATQ--NPQTALTFFTRMQAHAVPSNNFTFPALL------KACAALRR 67

Query: 64  RLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVEL 123
            LP     ++ T          +  A D F A         +A++  Y +CG    A ++
Sbjct: 68  LLPTLQVHAYLT---------RLGLAADRFSA---------AALVDAYGKCGHAYYAAQV 109

Query: 124 FKVAPVKSV--VAWTAMISGYMKFGYVENSWAEDG-LKLLR-----MMIGLGIRPNASSL 175
           F   P  SV  V+WTA+IS Y   G V+ ++   G ++ +R        G+ +    + +
Sbjct: 110 FDEMPEGSVDVVSWTALISAYSSNGCVDEAFKAFGRMRWMRGWDGSECCGVDVVSLGALV 169

Query: 176 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF--LEI 233
           S+  +GC   + L+ G  VH LV K      T     ++ MY  C D+  A ++F  + I
Sbjct: 170 SACAVGCGS-NCLRRGSAVHGLVVKYGFGVSTHLGNSMVHMYSACKDVGGAWRVFNGIPI 228

Query: 234 QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEG---MKPDSITFVALLLACNHAGLVD 290
           +++DVV+WN++ISG+  +G+ E+ALR F+ M  EG   ++P+ +T +ALL +C   G V+
Sbjct: 229 EQRDVVSWNSLISGFTLNGEAERALRTFEDMVSEGTSAVEPNRVTVIALLKSCAELGCVE 288

Query: 291 LGI---QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 338
                 +Y  S  +   +A      T ++D+  R G L  A ++   +  K
Sbjct: 289 TSSWVHEYISSRHSSLLVAKDVVVLTALLDMHARCGNLALAREIFDGVEGK 339



 Score = 41.6 bits (96), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 47/104 (45%), Gaps = 2/104 (1%)

Query: 233 IQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 292
           I  KD   WN++I+  A     + AL  F +M+   +  ++ TF ALL AC     +   
Sbjct: 13  ISHKDTFHWNSLIAKNATQNP-QTALTFFTRMQAHAVPSNNFTFPALLKACAALRRLLPT 71

Query: 293 IQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 336
           +Q   + +   G+AA       +VD  G+ G    A  +  +MP
Sbjct: 72  LQ-VHAYLTRLGLAADRFSAAALVDAYGKCGHAYYAAQVFDEMP 114


>gi|212721478|ref|NP_001131178.1| uncharacterized protein LOC100192486 [Zea mays]
 gi|194690792|gb|ACF79480.1| unknown [Zea mays]
          Length = 617

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 193/470 (41%), Positives = 277/470 (58%), Gaps = 7/470 (1%)

Query: 76  MISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAW 135
           ++S +    ++A +R  F  +   + V  +AM++     G +D A +LF   P +  VAW
Sbjct: 155 VLSMYAALGDVASSRAAFAEIACPDVVCVTAMVAALAAGGDVDAARDLFDGMPQRDHVAW 214

Query: 136 TAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVH 195
           +AMI+GYM  G      + + L L   M+  G     ++L SVL  C+ + +L  GK VH
Sbjct: 215 SAMIAGYMHVGR-----SREALMLFDEMLSAGTTVGEATLVSVLTACAQIGTLDRGKWVH 269

Query: 196 QLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGE 255
             V    +       T L+ MY KCG +  A ++F  +  ++V TW + +SG A +G G 
Sbjct: 270 WYVRSRGMQMSIKLGTALVDMYSKCGAVVTAMEVFESMAERNVYTWTSAVSGLAMNGMGT 329

Query: 256 KALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCM 315
           + L+LF +M+  G++P+ ++FVA+L  C+ AGLVD G   FDSM + YG+   P+HY CM
Sbjct: 330 ECLQLFKRMEGAGIQPNGVSFVAVLRGCSMAGLVDEGRACFDSM-DKYGVDPWPEHYGCM 388

Query: 316 VDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANA 375
           VDL GRAG+L +A+  I  MP +P   ++G LL+A R+H  +DL ++A   L  +   N 
Sbjct: 389 VDLYGRAGRLDDAISFINDMPMEPHEGVWGALLNASRIHNSVDLGKYALDKLLAIESEND 448

Query: 376 AGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPEL 435
           A  +VQL+NIYA  + W  V+R+R  MK   V K+PG+S IEV   VHEF  G R+HP  
Sbjct: 449 AA-HVQLSNIYAESQNWKGVSRVRGMMKAKGVKKVPGWSTIEVDGKVHEFYVGGRLHPRY 507

Query: 436 VSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTP 495
             I   L E+++R++L GY  +    L  + EE KE  +  HSEKLA+AFGLI +P    
Sbjct: 508 NEIELMLAEMDRRLRLQGYTANTREVLFDIEEEEKEGAISLHSEKLALAFGLIVLPEDVE 567

Query: 496 IRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           IR+ KNLRVC DCHR  K +S +  REI++RD  RFHHFK G CSC DYW
Sbjct: 568 IRIVKNLRVCMDCHRYIKLVSKVFNREIVMRDRNRFHHFKGGECSCRDYW 617



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 58/255 (22%), Positives = 106/255 (41%), Gaps = 19/255 (7%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G +  A++LFD +PQ D V+++ M++  +       A   F + L    T    T++S  
Sbjct: 194 GDVDAARDLFDGMPQRDHVAWSAMIAGYMHVGRSREALMLFDEMLSAGTTVGEATLVSVL 253

Query: 81  VQKKNMAK----------ARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVK 130
                +             R   + M  K     +A++  Y +CG +  A+E+F+    +
Sbjct: 254 TACAQIGTLDRGKWVHWYVRSRGMQMSIKLG---TALVDMYSKCGAVVTAMEVFESMAER 310

Query: 131 SVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQL 190
           +V  WT+ +S     G   N    + L+L + M G GI+PN  S  +VL GCS    +  
Sbjct: 311 NVYTWTSAVS-----GLAMNGMGTECLQLFKRMEGAGIQPNGVSFVAVLRGCSMAGLVDE 365

Query: 191 GKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI-QRKDVVTWNAMISGYA 249
           G+     + K  +         ++ +Y + G L+DA     ++        W A+++   
Sbjct: 366 GRACFDSMDKYGVDPWPEHYGCMVDLYGRAGRLDDAISFINDMPMEPHEGVWGALLNASR 425

Query: 250 QHGKGEKALRLFDKM 264
            H   +      DK+
Sbjct: 426 IHNSVDLGKYALDKL 440


>gi|413923916|gb|AFW63848.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
          Length = 1174

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 217/626 (34%), Positives = 329/626 (52%), Gaps = 87/626 (13%)

Query: 1   MNVKTTVNWNSVLAGFA---------------KQRGKLK-DAQELFDKIP---------Q 35
           M ++  V WN++LAG+A               +  G L+ +A  L   +P         Q
Sbjct: 161 MPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQ 220

Query: 36  PDVVSYNIMLSCILLNSDDV----------------VAAFDFFQRLPIKDTASWNTMISG 79
              +    + +C+  N + V                V A   F  +P+++  +W+ +I G
Sbjct: 221 GTSIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSALIGG 280

Query: 80  FVQKKNMAKARDLF-------LAMPEKNSVSWS--------------------------- 105
           FV    M +A +LF       L      SV+ +                           
Sbjct: 281 FVLCDRMTEAFNLFKDMLVEGLCFLSATSVASALRVCASLADLHMGTQLHALIAKSGIHA 340

Query: 106 ------AMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKL 159
                 +++S Y + G +++A   F    VK  +++ A++SG      V+N  AE+   +
Sbjct: 341 DLTASNSLLSMYAKAGLINEATMFFDEIAVKDTISYGALLSGC-----VQNGKAEEAFLV 395

Query: 160 LRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCK 219
            + M    + P+ +++ S++  CSHL++LQ GK  H  V    L  +T+    LI MY K
Sbjct: 396 FKKMQACNMEPDIATMVSLIPACSHLAALQHGKCSHGSVIIRGLALETSICNSLIDMYAK 455

Query: 220 CGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVAL 279
           CG ++ + ++F ++  +DVV+WN MI+GY  HG G++A  LF  MK++G  PD +TF+ L
Sbjct: 456 CGKIDLSRQVFDKMPARDVVSWNTMIAGYGIHGLGKEATTLFLGMKNQGFAPDDVTFICL 515

Query: 280 LLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKP 339
           + AC+H+GLV  G  +FD+M + YGI  + +HY CMVDLL R G L EA   I+ MP K 
Sbjct: 516 IAACSHSGLVTEGKHWFDTMTHKYGILPRMEHYICMVDLLARGGLLDEAYQFIQSMPLKA 575

Query: 340 QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIR 399
              ++G LL ACR+HK +DL +  +  +  L P    G +V L+NI++A  ++D+ A +R
Sbjct: 576 DVRVWGALLGACRIHKNIDLGKQVSRIIQKLGP-EGTGNFVLLSNIFSAAGRFDEAAEVR 634

Query: 400 LSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLE 459
           +  K     K PGYSWIE+   +H F  GD+ HP    I+ +L  +   +K  GY  D  
Sbjct: 635 IIQKVKGFKKSPGYSWIEINGSLHAFVGGDQSHPCSRDIYHELDNIMVDIKKLGYQADTS 694

Query: 460 FALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIE 519
           F L  + EE KE+ LL+HSEKLAIAFG++ +     I V KNLRVCGDCH A KY++ + 
Sbjct: 695 FVLQDLEEEEKEKALLYHSEKLAIAFGVLSLNEDKTIFVTKNLRVCGDCHTAIKYMTLVR 754

Query: 520 KREIIVRDTTRFHHFKDGTCSCGDYW 545
            R IIVRDT RFHHFK+G CSCG++W
Sbjct: 755 NRTIIVRDTNRFHHFKNGQCSCGNFW 780



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 105/377 (27%), Positives = 174/377 (46%), Gaps = 41/377 (10%)

Query: 20  RGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISG 79
           RG+L  A+++FD+IP PD  +YN ++           AA D ++ + ++   + N     
Sbjct: 47  RGQLALARQVFDRIPAPDARAYNALIRAYSWLG-PFHAAIDLYRSM-LRFRVAPNKYTFP 104

Query: 80  FVQKK-----NMAKAR-------------DLFLAMPEKNSVSWSAMISGYIECGQLDKAV 121
           FV K      ++   R             DLF++         +A+I  YI C +   A 
Sbjct: 105 FVLKACSALVDLRAGRTIHAHAAAAGLHTDLFVS---------TALIDLYIRCARFGPAR 155

Query: 122 ELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLG 181
            +F   P++ VVAW AM++GY   G   ++ A     LL M    G+RPNAS+L S+L  
Sbjct: 156 NVFAKMPMRDVVAWNAMLAGYANHGMYHHAIAH----LLDMQDHGGLRPNASTLVSLLPL 211

Query: 182 CSHLSSLQLGKQVHQLVFKSPLCKDTTAL---TPLISMYCKCGDLEDACKLFLEIQRKDV 238
            +   +L  G  +H    ++ L ++   +   T L+ MY KC  L  AC++F  +  ++ 
Sbjct: 212 LAQHGALFQGTSIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRND 271

Query: 239 VTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVA-LLLACNHAGLVDLGIQYFD 297
           VTW+A+I G+    +  +A  LF  M  EG+   S T VA  L  C     + +G Q   
Sbjct: 272 VTWSALIGGFVLCDRMTEAFNLFKDMLVEGLCFLSATSVASALRVCASLADLHMGTQ-LH 330

Query: 298 SMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRL 357
           +++   GI A       ++ +  +AG + EA     ++  K   + +G LLS C  + + 
Sbjct: 331 ALIAKSGIHADLTASNSLLSMYAKAGLINEATMFFDEIAVKDTIS-YGALLSGCVQNGKA 389

Query: 358 DLA--EFAAMNLFNLNP 372
           + A   F  M   N+ P
Sbjct: 390 EEAFLVFKKMQACNMEP 406



 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 69/249 (27%), Positives = 112/249 (44%), Gaps = 20/249 (8%)

Query: 99  KNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLK 158
           K+   W   +  +I  GQL  A ++F   P     A+ A+I  Y   G    +     + 
Sbjct: 32  KDKKQWQQELEQHISRGQLALARQVFDRIPAPDARAYNALIRAYSWLGPFHAA-----ID 86

Query: 159 LLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYC 218
           L R M+   + PN  +   VL  CS L  L+ G+ +H     + L  D    T LI +Y 
Sbjct: 87  LYRSMLRFRVAPNKYTFPFVLKACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYI 146

Query: 219 KCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKAL-RLFDKMKDEGMKPDSITFV 277
           +C     A  +F ++  +DVV WNAM++GYA HG    A+  L D     G++P++ T V
Sbjct: 147 RCARFGPARNVFAKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLV 206

Query: 278 ALL-LACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY-------TCMVDLLGRAGKLVEAV 329
           +LL L   H  L      +  + ++ Y + A  +         T ++D+  +  +LV A 
Sbjct: 207 SLLPLLAQHGAL------FQGTSIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYAC 260

Query: 330 DLIKKMPFK 338
            +   MP +
Sbjct: 261 RVFHGMPVR 269


>gi|297833028|ref|XP_002884396.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330236|gb|EFH60655.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 882

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 217/622 (34%), Positives = 331/622 (53%), Gaps = 84/622 (13%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQ--PDVVS------------------ 40
           M V+ +V +N+++ G+ K     +  +   + + Q  PD+++                  
Sbjct: 268 MVVRDSVTYNTMICGYLKLEMVEESVKMFLENLDQFKPDILTVTSVLCACGHLRDLSLAK 327

Query: 41  --YNIMLSC----------ILLN----SDDVVAAFDFFQRLPIKDTASWNTMISGFVQKK 84
             YN ML            IL++      D++ A D F  +  KDT SWN++ISG++Q  
Sbjct: 328 YIYNYMLRAGFVLESTVKNILIDVYAKCGDMITARDVFNSMECKDTVSWNSIISGYIQSG 387

Query: 85  NMAKARDLF---LAMPEKN-------------------------------------SVSW 104
           ++ +A  LF   + M E+                                      SVS 
Sbjct: 388 DLMEAMKLFKMMMIMEEQADHITYLMLISLSTRLADLKFGKGLHSNGIKSGIYIDLSVS- 446

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI 164
           +A+I  Y +CG++  ++++F        V W  +IS  ++FG         GL++   M 
Sbjct: 447 NALIDMYAKCGEVGDSLKIFNSMGTLDTVTWNTVISACVRFGDFAT-----GLQVTTQMR 501

Query: 165 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 224
              + P+ ++    L  C+ L++ +LGK++H  + +     +      LI MY KCG LE
Sbjct: 502 KNKVVPDMATFLVTLPMCASLAAKRLGKEIHCCLLRFGYESELQIGNALIEMYSKCGCLE 561

Query: 225 DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 284
            + ++F  + R+DVVTW  MI  Y  +G+GEKAL  F  M+  G+ PDS+ F+AL+ AC+
Sbjct: 562 SSFRVFERMSRRDVVTWTGMIYAYGMYGEGEKALESFVDMEKSGIVPDSVVFIALIYACS 621

Query: 285 HAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIF 344
           H+GLV+ G+  F+ M   Y I    +HY C+VDLL R+ K+ +A + I+ MP +P  +I+
Sbjct: 622 HSGLVEKGLACFEKMKTHYKIDPMIEHYACVVDLLSRSQKISKAEEFIQAMPIEPDASIW 681

Query: 345 GTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKE 404
            ++L ACR    ++ AE  +  +  LNP +  G  +  +N YAA++KWD V+ IR S+++
Sbjct: 682 ASVLRACRTSGDMETAERVSRRIIELNP-DDPGYSILASNAYAALRKWDKVSLIRKSVRD 740

Query: 405 NNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPD-LEFALH 463
            ++ K PGYSWIE+G  VH F SGD   P+  +IH+ L+ L   M   GY+PD  E + +
Sbjct: 741 KHIKKNPGYSWIEIGKKVHVFCSGDDSAPQSEAIHKSLEILYSLMAKEGYIPDSREVSQN 800

Query: 464 AVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREI 523
              EE K +L+  HSE+LAIAFGL+    GTP++V KNLRVC DCH  TK IS I  REI
Sbjct: 801 LEEEEEKRRLICGHSERLAIAFGLLNTEPGTPLQVMKNLRVCSDCHEVTKLISKIVGREI 860

Query: 524 IVRDTTRFHHFKDGTCSCGDYW 545
           +VRD  RFH FKDG CSC D W
Sbjct: 861 LVRDANRFHLFKDGICSCKDRW 882



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 86/359 (23%), Positives = 170/359 (47%), Gaps = 17/359 (4%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  ++ +   + L     + G L  A+++FD++P  D+VS+N ++S    +      A +
Sbjct: 135 MGFESDLYVGNALVDMYSRMGLLSRARQVFDEMPVRDLVSWNSLISG-YSSHGYYEEALE 193

Query: 61  FFQRLP----IKDTASWNTMISGFVQKKNMAKARDL--FLAMPEKNSVSW--SAMISGYI 112
            +  L     + D+ + ++++  F     + + + L  F      NSVS   + +++ Y+
Sbjct: 194 IYHELRNSWIVPDSFTVSSVLPAFANLLVVKQGQGLHGFTLKSGVNSVSVVNNGLLAMYL 253

Query: 113 ECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNA 172
           +  +   A  +F    V+  V +  MI GY+K   VE S     +K+    +    +P+ 
Sbjct: 254 KFSRPTDARRVFDEMVVRDSVTYNTMICGYLKLEMVEES-----VKMFLENLD-QFKPDI 307

Query: 173 SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLE 232
            +++SVL  C HL  L L K ++  + ++    ++T    LI +Y KCGD+  A  +F  
Sbjct: 308 LTVTSVLCACGHLRDLSLAKYIYNYMLRAGFVLESTVKNILIDVYAKCGDMITARDVFNS 367

Query: 233 IQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 292
           ++ KD V+WN++ISGY Q G   +A++LF  M     + D IT++ L+        +  G
Sbjct: 368 MECKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISLSTRLADLKFG 427

Query: 293 IQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSAC 351
                + +   GI         ++D+  + G++ +++ +   M        + T++SAC
Sbjct: 428 KGLHSNGIKS-GIYIDLSVSNALIDMYAKCGEVGDSLKIFNSMG-TLDTVTWNTVISAC 484



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 85/158 (53%), Gaps = 5/158 (3%)

Query: 125 KVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSH 184
           +V+P K+V  W ++I  + K     N W    L+    +    + P+  +  SV+  C+ 
Sbjct: 64  RVSPAKNVYIWNSIIRAFSK-----NGWFPKALEFYGKLRESKVSPDKYTFPSVIKACAG 118

Query: 185 LSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAM 244
           L   ++G  V++ + +     D      L+ MY + G L  A ++F E+  +D+V+WN++
Sbjct: 119 LFDAEMGDLVYKQILEMGFESDLYVGNALVDMYSRMGLLSRARQVFDEMPVRDLVSWNSL 178

Query: 245 ISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA 282
           ISGY+ HG  E+AL ++ ++++  + PDS T  ++L A
Sbjct: 179 ISGYSSHGYYEEALEIYHELRNSWIVPDSFTVSSVLPA 216



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/175 (25%), Positives = 83/175 (47%), Gaps = 13/175 (7%)

Query: 169 RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK 228
           R +++ +S  L   S+L+ L   +++H LV    L         LI  Y        +  
Sbjct: 4   RVSSAFISRALSSSSNLNEL---RRIHALVISLGLDGSDFFSGKLIDKYSHFRAPASSLS 60

Query: 229 LFLEIQ-RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG 287
           +F  +   K+V  WN++I  ++++G   KAL  + K+++  + PD  TF +++ AC  AG
Sbjct: 61  VFRRVSPAKNVYIWNSIIRAFSKNGWFPKALEFYGKLRESKVSPDKYTFPSVIKAC--AG 118

Query: 288 LVD--LGIQYFDSMVNDYGIAAKPDHY--TCMVDLLGRAGKLVEAVDLIKKMPFK 338
           L D  +G   +  ++    +  + D Y    +VD+  R G L  A  +  +MP +
Sbjct: 119 LFDAEMGDLVYKQILE---MGFESDLYVGNALVDMYSRMGLLSRARQVFDEMPVR 170


>gi|5280987|emb|CAB46001.1| hypothetical protein [Arabidopsis thaliana]
 gi|7268109|emb|CAB78447.1| hypothetical protein [Arabidopsis thaliana]
          Length = 686

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 197/467 (42%), Positives = 283/467 (60%), Gaps = 33/467 (7%)

Query: 85  NMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMK 144
           N AKA  +F ++  KN++SW+AM+SGY + G+ ++A+ELF++ PVK++ +WTA+ISG+++
Sbjct: 225 NSAKA--VFDSIRVKNTISWTAMVSGYAKSGRKEEALELFRILPVKNLYSWTALISGFVQ 282

Query: 145 FG------YVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLV 198
            G       V      + + +L  ++          LSS++  C++L++   G+QVH   
Sbjct: 283 SGKGLEAFSVFTEMRRERVDILDPLV----------LSSIVGACANLAASIAGRQVHG-- 330

Query: 199 FKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKAL 258
                         LI MY KC D+  A  +F  ++ +DVV+W ++I G AQHG+ EKAL
Sbjct: 331 ------------NALIDMYAKCSDVIAAKDIFSRMRHRDVVSWTSLIVGMAQHGQAEKAL 378

Query: 259 RLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDL 318
            L+D M   G+KP+ +TFV L+ AC+H G V+ G + F SM  DYGI     HYTC++DL
Sbjct: 379 ALYDDMVSHGVKPNEVTFVGLIYACSHVGFVEKGRELFQSMTKDYGIRPSLQHYTCLLDL 438

Query: 319 LGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGC 378
           LGR+G L EA +LI  MPF P    +  LLSAC+   R  +    A +L +         
Sbjct: 439 LGRSGLLDEAENLIHTMPFPPDEPTWAALLSACKRQGRGQMGIRIADHLVSSFKLKDPST 498

Query: 379 YVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSI 438
           Y+ L+NIYA+   W  V+  R  + E  V K PG+S +EV      F +G+  HP    I
Sbjct: 499 YILLSNIYASASLWGKVSEARRKLGEMEVRKDPGHSSVEVRKETEVFYAGETSHPLKEDI 558

Query: 439 HEKLKELEKRMKLA-GYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIR 497
              LK+LE+ M++  GYVPD  + LH + E+ KE+LL +HSE+ A+A+GL+K   GTPIR
Sbjct: 559 FRLLKKLEEEMRIRNGYVPDTSWILHDMDEQEKEKLLFWHSERSAVAYGLLKAVPGTPIR 618

Query: 498 VFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDY 544
           + KNLRVCGDCH   K+IS I +REIIVRD TR+HHFK G CSC D+
Sbjct: 619 IVKNLRVCGDCHVVLKHISEITEREIIVRDATRYHHFKGGKCSCNDF 665



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 83/157 (52%), Gaps = 4/157 (2%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI 164
           + +++ Y +CG    A+++F   P +  +AW ++++   +     N   +       +  
Sbjct: 110 NTLVNVYGKCGAASHALQVFDEMPHRDHIAWASVLTALNQ----ANLSGKTLSVFSSVGS 165

Query: 165 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 224
             G+RP+    S+++  C++L S+  G+QVH     S    D    + L+ MY KCG L 
Sbjct: 166 SSGLRPDDFVFSALVKACANLGSIDHGRQVHCHFIVSEYANDEVVKSSLVDMYAKCGLLN 225

Query: 225 DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLF 261
            A  +F  I+ K+ ++W AM+SGYA+ G+ E+AL LF
Sbjct: 226 SAKAVFDSIRVKNTISWTAMVSGYAKSGRKEEALELF 262



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 67/307 (21%), Positives = 136/307 (44%), Gaps = 66/307 (21%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           + VK T++W ++++G+AK  G+ ++A ELF  +P  ++ S+  ++S   + S   + AF 
Sbjct: 234 IRVKNTISWTAMVSGYAKS-GRKEEALELFRILPVKNLYSWTALISG-FVQSGKGLEAFS 291

Query: 61  FF-----QRLPIKD---------------------TASWNTMISGFVQKKNMAKARDLFL 94
            F     +R+ I D                         N +I  + +  ++  A+D+F 
Sbjct: 292 VFTEMRRERVDILDPLVLSSIVGACANLAASIAGRQVHGNALIDMYAKCSDVIAAKDIFS 351

Query: 95  AMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAE 154
            M  ++ VSW+++I G  + GQ +KA+ L+                             +
Sbjct: 352 RMRHRDVVSWTSLIVGMAQHGQAEKALALY-----------------------------D 382

Query: 155 DGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDT-TALTPL 213
           D       M+  G++PN  +   ++  CSH+  ++ G+++ Q + K    + +    T L
Sbjct: 383 D-------MVSHGVKPNEVTFVGLIYACSHVGFVEKGRELFQSMTKDYGIRPSLQHYTCL 435

Query: 214 ISMYCKCGDLEDACKLFLEIQ-RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPD 272
           + +  + G L++A  L   +    D  TW A++S   + G+G+  +R+ D +       D
Sbjct: 436 LDLLGRSGLLDEAENLIHTMPFPPDEPTWAALLSACKRQGRGQMGIRIADHLVSSFKLKD 495

Query: 273 SITFVAL 279
             T++ L
Sbjct: 496 PSTYILL 502



 Score = 48.1 bits (113), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 67/144 (46%), Gaps = 4/144 (2%)

Query: 187 SLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMIS 246
           +L   K +H  + K  + +       L+++Y KCG    A ++F E+  +D + W ++++
Sbjct: 86  TLTTAKALHAHIVKLGIVQCCPLANTLVNVYGKCGAASHALQVFDEMPHRDHIAWASVLT 145

Query: 247 GYAQHGKGEKAL-RLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ-YFDSMVNDYG 304
              Q     K L          G++PD   F AL+ AC + G +D G Q +   +V++Y 
Sbjct: 146 ALNQANLSGKTLSVFSSVGSSSGLRPDDFVFSALVKACANLGSIDHGRQVHCHFIVSEY- 204

Query: 305 IAAKPDHYTCMVDLLGRAGKLVEA 328
            A      + +VD+  + G L  A
Sbjct: 205 -ANDEVVKSSLVDMYAKCGLLNSA 227


>gi|225433177|ref|XP_002281549.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15130 [Vitis vinifera]
 gi|296083673|emb|CBI23662.3| unnamed protein product [Vitis vinifera]
          Length = 685

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 213/571 (37%), Positives = 327/571 (57%), Gaps = 41/571 (7%)

Query: 1   MNVKTTVNWNSVLAG----FAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVV 56
           M VK+   W SV+         + G++  A+++F+K+P  ++VS+N M++    +  +  
Sbjct: 130 MCVKSGFEWVSVVGNATIDMYSKCGRIGMAEQVFNKMPFRNLVSWNAMIAG-HTHEGNGR 188

Query: 57  AAFDFFQRL----PIKDTASWNTMIS-----GFVQKKNMAKARDLFLAMP-EKNSVSWSA 106
            +   FQR+     + D  ++ + +      G ++      A  +    P    ++  SA
Sbjct: 189 KSLVLFQRMQGQGEVPDEFTFTSTLKACGALGAIRGGTQIHASLITRGFPISIRNIIASA 248

Query: 107 MISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGL 166
           ++  Y +CG L +A ++F     K++++W+A+I G+          A++G  L  M +  
Sbjct: 249 IVDLYAKCGYLFEAQKVFDRIEQKNLISWSALIQGF----------AQEGNLLEAMDLFR 298

Query: 167 GIRPNASSLS----SVLLGC-SHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCG 221
            +R + S++     S+++G  + L+ ++ GKQ+H  + K P   D +    +I MY KCG
Sbjct: 299 QLRESVSNVDGFVLSIMMGVFADLALVEQGKQMHCYILKVPSGLDISVANSIIDMYLKCG 358

Query: 222 DLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLL 281
             E+A +LF E+Q ++VV+W  MI+GY +HG GEKA+ LF++M+ +G++ D + ++ALL 
Sbjct: 359 LTEEAERLFSEMQVRNVVSWTVMITGYGKHGLGEKAIHLFNRMQLDGIELDEVAYLALLS 418

Query: 282 ACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQP 341
           AC+H+GL+    +YF  + N++ +    +HY CMVD+LGRAG+L EA +LI+ M  KP  
Sbjct: 419 ACSHSGLIRESQEYFSRLCNNHQMKPNIEHYACMVDILGRAGQLKEAKNLIENMKLKPNE 478

Query: 342 AIFGTLLSACRVHKRLDLAEFAAMNLFNL---NPANAAGCYVQLANIYAAMKKWDDVARI 398
            I+ TLLSACRVH  L++       LF +   NP N    YV ++NIYA    W +  R+
Sbjct: 479 GIWQTLLSACRVHGNLEIGREVGEILFRMDTDNPVN----YVMMSNIYAEAGYWKECERV 534

Query: 399 RLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMK-LAGYVPD 457
           R  +K   + K  G SW+E+   +H F  GD  HP    IHE LKE+E+R+K   GY   
Sbjct: 535 RKLVKAKGLKKEAGQSWVEINKEIHFFYGGDDTHPLTEKIHEMLKEMERRVKEEVGYAYG 594

Query: 458 LEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPL---GTPIRVFKNLRVCGDCHRATKY 514
           L FALH V EE KE+ L  HSEKLAI   L+   +   G  IRVFKNLRVCGDCH   K 
Sbjct: 595 LRFALHDVEEESKEENLRVHSEKLAIGLALVCDGMEKKGGVIRVFKNLRVCGDCHEFIKG 654

Query: 515 ISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           +S I K+  +VRD  RFH F+DG CSCGDYW
Sbjct: 655 LSKILKKVFVVRDANRFHRFEDGLCSCGDYW 685



 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 74/233 (31%), Positives = 124/233 (53%), Gaps = 6/233 (2%)

Query: 107 MISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGL 166
           +I  Y +C ++D A  +F     ++VV+WTA++ GY++ G  + S     L LL  M   
Sbjct: 45  LIDMYGKCSRVDLACSVFDRMLERNVVSWTALMCGYLQEGNAKGS-----LALLCEMGYS 99

Query: 167 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 226
           G++PN  + S+ L  C  L  ++ G Q+H +  KS     +      I MY KCG +  A
Sbjct: 100 GVKPNEFTFSTSLKACGALGVVENGMQIHGMCVKSGFEWVSVVGNATIDMYSKCGRIGMA 159

Query: 227 CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHA 286
            ++F ++  +++V+WNAMI+G+   G G K+L LF +M+ +G  PD  TF + L AC   
Sbjct: 160 EQVFNKMPFRNLVSWNAMIAGHTHEGNGRKSLVLFQRMQGQGEVPDEFTFTSTLKACGAL 219

Query: 287 GLVDLGIQYFDSMVN-DYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 338
           G +  G Q   S++   + I+ +    + +VDL  + G L EA  +  ++  K
Sbjct: 220 GAIRGGTQIHASLITRGFPISIRNIIASAIVDLYAKCGYLFEAQKVFDRIEQK 272



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 76/164 (46%), Gaps = 1/164 (0%)

Query: 175 LSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ 234
           L+ +L  CS       G QVH          D      LI MY KC  ++ AC +F  + 
Sbjct: 7   LAKLLRNCSKNGLFDQGLQVHAAAVNMGFGFDLIMNNDLIDMYGKCSRVDLACSVFDRML 66

Query: 235 RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ 294
            ++VV+W A++ GY Q G  + +L L  +M   G+KP+  TF   L AC   G+V+ G+Q
Sbjct: 67  ERNVVSWTALMCGYLQEGNAKGSLALLCEMGYSGVKPNEFTFSTSLKACGALGVVENGMQ 126

Query: 295 YFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 338
               M    G           +D+  + G++  A  +  KMPF+
Sbjct: 127 -IHGMCVKSGFEWVSVVGNATIDMYSKCGRIGMAEQVFNKMPFR 169


>gi|357438977|ref|XP_003589765.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355478813|gb|AES60016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 960

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 204/545 (37%), Positives = 314/545 (57%), Gaps = 22/545 (4%)

Query: 7   VNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCIL--LNSDDVVAAFDFFQR 64
           ++WNS++ G     G  +DA  LF+++ +  VV    +L  IL   +  D  +  +    
Sbjct: 345 ISWNSLITGVV-HFGLGEDALILFNQMRRSSVVLDEFILPTILGVCSGPDYASTGELLHG 403

Query: 65  LPIKDTAS-----WNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDK 119
             IK          N +I+ + +  +  KA  +F  MP +N++SW+AMI+ +   G + K
Sbjct: 404 YTIKSGMGSSAPVGNAIITMYAKCGDTDKADLVFRLMPLRNTISWTAMITAFSRSGDIGK 463

Query: 120 AVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVL 179
           A   F + P +++V W +M+S Y     V+N ++E+GLKL   M   G++P+  + ++ +
Sbjct: 464 ARGYFDMMPERNIVTWNSMLSTY-----VQNGFSEEGLKLYVSMRSNGVQPDWITFTTSI 518

Query: 180 LGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVV 239
             C+ L+ ++LG QV     K  L  + +    +++MY +CG +++A   F  I  KD++
Sbjct: 519 RACADLAIVKLGMQVVTHATKFGLSLNVSVANSIVTMYSRCGLIKEAKNTFDSIDDKDLI 578

Query: 240 TWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSM 299
           +WNAM++ +AQ+G G K +  F+ M     KP+ I++V++L  C+H GLV  G  YFDSM
Sbjct: 579 SWNAMLAAFAQNGLGIKVIDTFEDMLKTECKPNHISYVSVLSGCSHMGLVAEGKHYFDSM 638

Query: 300 VNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDL 359
              +GI+   +H++CMVDLLGRAG L +A DLI+ MPFKP   ++  LL +CRVH  L L
Sbjct: 639 TRVFGISPTNEHFSCMVDLLGRAGLLEQAKDLIEGMPFKPNATVWSALLGSCRVHHDLRL 698

Query: 360 AEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVG 419
           AE AA  L  L+   + G YV L+N+Y+   + D+VA +R  MK   +    G SWIEV 
Sbjct: 699 AETAAKKLMELDVEGSEG-YVLLSNMYSESGELDNVADMRKLMKVKGIRTSRGCSWIEVD 757

Query: 420 TVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSE 479
             VH F   +  HP++  ++ KL+E+ K ++  G    +E ++H   +        +HSE
Sbjct: 758 NRVHVFTVDETSHPQIKEVYLKLEEMMKMIEDTGKYITVESSVHRSKK--------YHSE 809

Query: 480 KLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTC 539
           KLA AFGL+ +P   PI V KNLRVC DCH   K +S +  RE+I+RD  RFHHFKDG C
Sbjct: 810 KLAFAFGLLNLPSWMPIHVMKNLRVCDDCHLVIKLLSLVTSRELIMRDGYRFHHFKDGIC 869

Query: 540 SCGDY 544
           SC DY
Sbjct: 870 SCKDY 874



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 95/451 (21%), Positives = 190/451 (42%), Gaps = 62/451 (13%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQ--PDVVSYNIMLS--------------- 46
           +    WN+++        ++ DA++LFD++P    D VS+  M+S               
Sbjct: 72  RNIFTWNTMIRALVSS-SRMSDAEKLFDEMPVRVKDSVSWTTMISGYSQNGFHSRSFETF 130

Query: 47  -CILLNSDDVVAAFDFFQ--------------RLPIK------------DTASWNTMISG 79
             ++ +++D    +D F               RL I+            +T   N+++  
Sbjct: 131 SLMIRDTNDGGKNYDPFSFTSVMKACGSLGDSRLAIQLHALVSKLGFGMETCIQNSVVGM 190

Query: 80  FVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMI 139
           +V+  ++  A  +F  +   +   W++MI GY +     KA+++F   P +  V+W  +I
Sbjct: 191 YVKCGDVDLAETVFFDIERPSLFCWNSMIYGYSQMYGPYKALQIFNRMPERDEVSWNTLI 250

Query: 140 SGYMKFGYVENSWAEDGLKLLRMMIGL---GIRPNASSLSSVLLGCSHLSSLQLGKQVHQ 196
           S + + G+        G++ L M + +   G  PN  +  SVL  C+  S L+ G  +H 
Sbjct: 251 SIFSQHGF--------GVQCLAMFVEMCNQGFSPNFMTYGSVLSACASTSDLKWGAHLHA 302

Query: 197 LVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEK 256
            + +     D      LI MY KCG L+ A ++F  ++  D ++WN++I+G    G GE 
Sbjct: 303 RILRMEHSLDLVFGNGLIDMYAKCGCLDLAKRVFKSLREHDHISWNSLITGVVHFGLGED 362

Query: 257 ALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMV 316
           AL LF++M+   +  D      +L  C+       G +         G+ +       ++
Sbjct: 363 ALILFNQMRRSSVVLDEFILPTILGVCSGPDYASTG-ELLHGYTIKSGMGSSAPVGNAII 421

Query: 317 DLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAA 376
            +  + G   +A  + + MP +   +    + +  R     D+ +  A   F++ P    
Sbjct: 422 TMYAKCGDTDKADLVFRLMPLRNTISWTAMITAFSRSG---DIGK--ARGYFDMMPERNI 476

Query: 377 GCYVQLANIYAAMKKWDDVARIRLSMKENNV 407
             +  + + Y      ++  ++ +SM+ N V
Sbjct: 477 VTWNSMLSTYVQNGFSEEGLKLYVSMRSNGV 507



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 75/259 (28%), Positives = 113/259 (43%), Gaps = 65/259 (25%)

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP--EKNSVSWSAMISGYIECG 115
           AF  FQ    ++  +WNTMI   V    M+ A  LF  MP   K+SVSW+ MISGY + G
Sbjct: 62  AFQVFQETHHRNIFTWNTMIRALVSSSRMSDAEKLFDEMPVRVKDSVSWTTMISGYSQNG 121

Query: 116 QLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSL 175
              ++ E F +           MI               DG          G   +  S 
Sbjct: 122 FHSRSFETFSL-----------MIRD-----------TNDG----------GKNYDPFSF 149

Query: 176 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR 235
           +SV+  C  L   +L  Q+H LV K     +T     ++ MY KCGD++ A  +F +I+R
Sbjct: 150 TSVMKACGSLGDSRLAIQLHALVSKLGFGMETCIQNSVVGMYVKCGDVDLAETVFFDIER 209

Query: 236 -------------------------------KDVVTWNAMISGYAQHGKGEKALRLFDKM 264
                                          +D V+WN +IS ++QHG G + L +F +M
Sbjct: 210 PSLFCWNSMIYGYSQMYGPYKALQIFNRMPERDEVSWNTLISIFSQHGFGVQCLAMFVEM 269

Query: 265 KDEGMKPDSITFVALLLAC 283
            ++G  P+ +T+ ++L AC
Sbjct: 270 CNQGFSPNFMTYGSVLSAC 288



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 78/181 (43%), Gaps = 8/181 (4%)

Query: 187 SLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMIS 246
           S  + +++H  +  S L      L  L+ MY  CG   DA ++F E   +++ TWN MI 
Sbjct: 23  SPHIARKLHAQLILSGLDSSLFLLNNLLHMYSNCGLTHDAFQVFQETHHRNIFTWNTMIR 82

Query: 247 GYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV---NDY 303
                 +   A +LFD+M       DS+++  ++   +  G      + F  M+   ND 
Sbjct: 83  ALVSSSRMSDAEKLFDEMPVR--VKDSVSWTTMISGYSQNGFHSRSFETFSLMIRDTNDG 140

Query: 304 GIAAKPDHYTCMVDLLGRAGKLVEAVD---LIKKMPFKPQPAIFGTLLSACRVHKRLDLA 360
           G    P  +T ++   G  G    A+    L+ K+ F  +  I  +++        +DLA
Sbjct: 141 GKNYDPFSFTSVMKACGSLGDSRLAIQLHALVSKLGFGMETCIQNSVVGMYVKCGDVDLA 200

Query: 361 E 361
           E
Sbjct: 201 E 201


>gi|296080932|emb|CBI18728.3| unnamed protein product [Vitis vinifera]
          Length = 607

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 210/538 (39%), Positives = 305/538 (56%), Gaps = 31/538 (5%)

Query: 26  AQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKN 85
           A  +F     P+V  Y  ++       D  V++ ++F  + +      ++++       +
Sbjct: 83  ASRIFQYTHNPNVYLYTALI-------DGFVSSGNYFDAIQLYSRMLHDSILPDNYLMAS 135

Query: 86  MAKARDLFLAMPEKNSVSWSAMISG--------------YIECGQLDKAVELFKVAP--- 128
           + KA    LA+ E   V   A+  G              Y +CG+L  A  +F+  P   
Sbjct: 136 ILKACGSQLALREGREVHSRALKLGLSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDV 195

Query: 129 -VKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSS 187
             K  V WTAMI G+     V N      L+  R M G  +RPN  ++  VL  CS L +
Sbjct: 196 VAKDTVCWTAMIDGF-----VRNEEMNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGA 250

Query: 188 LQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISG 247
           L++G+ VH  + K  +  +      LI+MY +CG +++A  +F E++ +DV+T+N MISG
Sbjct: 251 LEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISG 310

Query: 248 YAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAA 307
            + +GK  +A+ LF  M    ++P ++TFV +L AC+H GLVD G + F SM  DYG+  
Sbjct: 311 LSMNGKSRQAIELFRVMIGRRLRPTNVTFVGVLNACSHGGLVDFGFKIFHSMTRDYGVEP 370

Query: 308 KPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNL 367
           + +HY CMVDLLGR G+L EA DLI+ M   P   + GTLLSAC++HK L+L E  A  L
Sbjct: 371 QIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVAKVL 430

Query: 368 FNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRS 427
            +   A+ +G YV L+++YA+  KW + A++R  MKE  + K PG S IEV   +HEF  
Sbjct: 431 EDRGQAD-SGTYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSIEVNNEIHEFLL 489

Query: 428 GDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGL 487
           GD  HP    I+EKL+EL + ++L GY P+ E  L  + +  KE  L  HSE+LAI +GL
Sbjct: 490 GDLRHPRKERIYEKLEELNRLLRLEGYHPEKEVVLQDIEDGEKEWALAIHSERLAICYGL 549

Query: 488 IKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           I     T IRV KNLRVC DCH A K I+ I +R+++VRD  RFH+F++G CSCGDYW
Sbjct: 550 ISTEPCTVIRVMKNLRVCYDCHSAIKLIAKITRRKVVVRDRNRFHYFENGACSCGDYW 607



 Score = 46.6 bits (109), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 34/158 (21%), Positives = 75/158 (47%), Gaps = 7/158 (4%)

Query: 185 LSSLQLGKQVHQLV------FKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDV 238
           +S LQ  K ++Q++       ++   +D   +  L+    KC  ++ A ++F      +V
Sbjct: 36  ISLLQRSKHINQVLPIHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNV 95

Query: 239 VTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDS 298
             + A+I G+   G    A++L+ +M  + + PD+    ++L AC     +  G +   S
Sbjct: 96  YLYTALIDGFVSSGNYFDAIQLYSRMLHDSILPDNYLMASILKACGSQLALREGRE-VHS 154

Query: 299 MVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 336
                G+++       +++L G+ G+L +A  + ++MP
Sbjct: 155 RALKLGLSSNRLVRLRIMELYGKCGELGDARRVFEEMP 192


>gi|188509964|gb|ACD56648.1| putative pentatricopeptide repeat protein [Gossypioides kirkii]
          Length = 805

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 194/547 (35%), Positives = 309/547 (56%), Gaps = 35/547 (6%)

Query: 7   VNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLN--SDDVVAAFDFFQR 64
           +N+++ L     + G L  A  +F+K+ + +VVS+  M++    +  SD  +      ++
Sbjct: 286 INFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIRLLQQMEK 345

Query: 65  LPIK-DTASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMISGYIECGQLDK 119
             +K D  +  +++    +  ++   +D+   +     E N    +A++  Y +CG +D 
Sbjct: 346 EGVKLDVVATTSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYTKCGSMDG 405

Query: 120 AVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVL 179
           A  +F    VK +++W  MI                            ++P++ +++ +L
Sbjct: 406 ANSVFSTMVVKDIISWNTMIGE--------------------------LKPDSRTMACIL 439

Query: 180 LGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVV 239
             C+ LS+L+ GK++H  + ++    D      L+ +Y KCG L  A  LF  I  KD+V
Sbjct: 440 PACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLV 499

Query: 240 TWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSM 299
           +W  MISGY  HG G +A+  F++M+D G++PD ++F+++L AC+H+GL++ G ++F  M
Sbjct: 500 SWTVMISGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIM 559

Query: 300 VNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDL 359
            ND+ I  K +HY CMVDLL R G L +A + I+ +P  P   I+G LL  CR++  ++L
Sbjct: 560 KNDFNIEPKLEHYACMVDLLSRTGNLSKAYEFIETLPIAPDATIWGALLCGCRIYHDIEL 619

Query: 360 AEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVG 419
           AE  A  +F L P N  G YV LANIYA  +KW++V R+R  + +  + K PG SWIE+ 
Sbjct: 620 AEKVAERVFELEPEN-TGYYVLLANIYAEAEKWEEVKRMREKIGKKGLRKNPGCSWIEIK 678

Query: 420 TVVHEFRSGDR-VHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHS 478
             V+ F SG+   HP    I   LK++ ++MK  GY P  ++AL    E  KE  L  HS
Sbjct: 679 GKVNLFVSGNNSSHPHSKKIESLLKKMRRKMKEEGYFPKTKYALINADEMQKEMALCGHS 738

Query: 479 EKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGT 538
           EKLA+AFGL+ +P    +RV KNLRVCGDCH   K++S   +REI++RD+ RFHHFK+G 
Sbjct: 739 EKLAMAFGLLALPPRKTVRVTKNLRVCGDCHEMAKFMSKETRREIVLRDSNRFHHFKNGY 798

Query: 539 CSCGDYW 545
           CSC  +W
Sbjct: 799 CSCRGFW 805



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 91/313 (29%), Positives = 156/313 (49%), Gaps = 47/313 (15%)

Query: 76  MISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKS---- 131
           ++S +    ++ + R +F  M +KN   W+ M+S Y + G   +++ LFK+   K     
Sbjct: 140 LVSLYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGK 199

Query: 132 ----------------VVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSL 175
                           V++W +MISGY     V N   E GL++ + M+ LGI  + +++
Sbjct: 200 RPESASELFDKLCDRDVISWNSMISGY-----VSNGLTERGLEIYKQMMYLGIDVDLATI 254

Query: 176 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR 235
            SVL+GC++  +L LGK VH L  KS   +       L+ MY KCGDL+ A ++F ++  
Sbjct: 255 ISVLVGCANSGTLSLGKAVHSLAIKSTFERRINFSNTLLDMYSKCGDLDGALRVFEKMGE 314

Query: 236 KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQY 295
           ++VV+W +MI+GY + G+ + A+RL  +M+ EG+K D +   ++L AC  +G +D G   
Sbjct: 315 RNVVSWTSMIAGYTRDGRSDGAIRLLQQMEKEGVKLDVVATTSILHACARSGSLDNGKD- 373

Query: 296 FDSMVNDYGIA--AKPDHYTC--MVDLLGRAGKLVEAVDLIKKM-------------PFK 338
               V+DY  A   + + + C  ++D+  + G +  A  +   M               K
Sbjct: 374 ----VHDYIKANNMESNLFVCNALMDMYTKCGSMDGANSVFSTMVVKDIISWNTMIGELK 429

Query: 339 PQPAIFGTLLSAC 351
           P       +L AC
Sbjct: 430 PDSRTMACILPAC 442



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 88/376 (23%), Positives = 159/376 (42%), Gaps = 85/376 (22%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLS------------CIL-------LNSDDVVAAFDF 61
           G LK+ + +FD + + +V  +N M+S            C+        +      +A + 
Sbjct: 148 GDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESASEL 207

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP------------------------ 97
           F +L  +D  SWN+MISG+V      +  +++  M                         
Sbjct: 208 FDKLCDRDVISWNSMISGYVSNGLTERGLEIYKQMMYLGIDVDLATIISVLVGCANSGTL 267

Query: 98  ---------------EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGY 142
                          E+     + ++  Y +CG LD A+ +F+    ++VV+WT+MI+GY
Sbjct: 268 SLGKAVHSLAIKSTFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGY 327

Query: 143 MKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSP 202
            + G      ++  ++LL+ M   G++ +  + +S+L  C+   SL  GK VH  +  + 
Sbjct: 328 TRDGR-----SDGAIRLLQQMEKEGVKLDVVATTSILHACARSGSLDNGKDVHDYIKANN 382

Query: 203 LCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFD 262
           +  +      L+ MY KCG ++ A  +F  +  KD+++WN MI        GE       
Sbjct: 383 MESNLFVCNALMDMYTKCGSMDGANSVFSTMVVKDIISWNTMI--------GE------- 427

Query: 263 KMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRA 322
                 +KPDS T   +L AC     ++ G +    ++ + G ++       +VDL  + 
Sbjct: 428 ------LKPDSRTMACILPACASLSALERGKEIHGYILRN-GYSSDRHVANALVDLYVKC 480

Query: 323 GKLVEAVDLIKKMPFK 338
           G L  A  L   +P K
Sbjct: 481 GVLGLARLLFDMIPSK 496



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 59/257 (22%), Positives = 109/257 (42%), Gaps = 59/257 (22%)

Query: 130 KSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQ 189
           + V  + A I  + + G +EN+     ++L+ M     +     + SSVL  C+   SL 
Sbjct: 64  RQVTDYNAKILHFCQLGNLENA-----MELVCMCQKSELE--TKTYSSVLQLCAGSKSLT 116

Query: 190 LGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDL-------------------------- 223
            GK+VH ++  + +  D      L+S+Y  CGDL                          
Sbjct: 117 DGKKVHSIIKSNNVAVDEVLGLKLVSLYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYA 176

Query: 224 -------------------------EDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKAL 258
                                    E A +LF ++  +DV++WN+MISGY  +G  E+ L
Sbjct: 177 KIGDFKESICLFKIMVEKGIEGKRPESASELFDKLCDRDVISWNSMISGYVSNGLTERGL 236

Query: 259 RLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDL 318
            ++ +M   G+  D  T +++L+ C ++G + LG +   S+        + +    ++D+
Sbjct: 237 EIYKQMMYLGIDVDLATIISVLVGCANSGTLSLG-KAVHSLAIKSTFERRINFSNTLLDM 295

Query: 319 LGRAGKLVEAVDLIKKM 335
             + G L  A+ + +KM
Sbjct: 296 YSKCGDLDGALRVFEKM 312


>gi|58743498|gb|AAW81739.1| Putative Putative Pentatricopeptide (PPR) repeat-containing protein
           [Brassica oleracea]
          Length = 968

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 205/544 (37%), Positives = 310/544 (56%), Gaps = 15/544 (2%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP--- 66
           N+ +A +AK  G L  A  +F  I    V S+N ++     +SD  ++   +FQ      
Sbjct: 432 NAFVASYAKC-GSLSYAHRVFCSIRSKTVNSWNALIGGYSQSSDPRLSLDAYFQMKSSGL 490

Query: 67  IKDTASWNTMISGFVQKKNMAKARD----LFLAMPEKNSVSWSAMISGYIECGQLDKAVE 122
           + D  +  +++S   Q K++   ++    +     E++S  + +++S YI CG+L  A  
Sbjct: 491 LPDLFTVCSLLSACSQIKSLKLGKEVHGLIIRNRLERDSFVYISLLSLYIHCGELSTAHV 550

Query: 123 LFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGC 182
           LF     K++V+W  M++GY+     +N + E  L L R M+  G++P   S+ SV   C
Sbjct: 551 LFDAMEDKTLVSWNTMVNGYL-----QNGFPERALSLFRQMVLYGVQPCEISMMSVFGAC 605

Query: 183 SHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWN 242
           S L SL+LG++ H    K  L  +      +I MY K G + ++ K+F  ++ + V +WN
Sbjct: 606 SLLPSLRLGREAHGYALKCLLEDNAFIACSVIDMYAKNGSVMESFKVFNGLKERSVASWN 665

Query: 243 AMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVND 302
           AM+ GY  HG+ ++A++LF++M+  G  PD +TF+ +L ACNH+GLV  G+ Y D M   
Sbjct: 666 AMVMGYGIHGRAKEAIKLFEEMQRTGHCPDELTFLGVLTACNHSGLVHEGLTYLDQMKTL 725

Query: 303 YGIAAKPDHYTCMVDLLGRAGKLVEAVDL-IKKMPFKPQPAIFGTLLSACRVHKRLDLAE 361
           +G+     HY C++D+L RAGKL EA+ +  ++M  +P   I+  LLS+CR+HK L++ E
Sbjct: 726 FGMNPTLKHYACVIDMLVRAGKLDEALKIATEEMSEEPGVGIWNFLLSSCRIHKNLEMGE 785

Query: 362 FAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTV 421
             A  LF   P      YV L+N+YA   KWD+V ++R  MKE ++ K  G SWIE+   
Sbjct: 786 KIAAKLFVSEPEKPEN-YVLLSNLYAGSGKWDEVRKVRQRMKEMSLRKDAGCSWIELNGK 844

Query: 422 VHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKL 481
           V  F +G+        I      LE+ +   GY PD     H + EE K + L  HSEKL
Sbjct: 845 VFSFVAGESSLDGFEEIKSLWSVLEREIGKMGYRPDTSSVQHDLSEEEKTEQLRGHSEKL 904

Query: 482 AIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSC 541
           AI +GLI+   GT +RV+KNLR+C DCH A K IS + +REI+VRD  RFHHFK+G CSC
Sbjct: 905 AITYGLIRTSEGTTLRVYKNLRICVDCHNAAKLISKVMEREIVVRDNKRFHHFKNGFCSC 964

Query: 542 GDYW 545
           GDYW
Sbjct: 965 GDYW 968



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 80/286 (27%), Positives = 142/286 (49%), Gaps = 17/286 (5%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPI-- 67
           N+ L     + G + DAQ +F      +VVS+N M+      + D+   FD  +++    
Sbjct: 327 NNALMDMYSKCGCINDAQVIFKLNNNKNVVSWNTMVGG-FSAAGDIHKTFDLLRQMLAGG 385

Query: 68  ----KDTASWNTMISGFVQKKNMAKARDLFL-----AMPEKNSVSWSAMISGYIECGQLD 118
                D  +    +    ++  +   ++L            N +  +A ++ Y +CG L 
Sbjct: 386 GDLRADEVTILNAVPVCFEESVLPNLKELHCYSLKQEFVHNNELVANAFVASYAKCGSLS 445

Query: 119 KAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSV 178
            A  +F     K+V +W A+I GY      ++S     L     M   G+ P+  ++ S+
Sbjct: 446 YAHRVFCSIRSKTVNSWNALIGGYS-----QSSDPRLSLDAYFQMKSSGLLPDLFTVCSL 500

Query: 179 LLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDV 238
           L  CS + SL+LGK+VH L+ ++ L +D+     L+S+Y  CG+L  A  LF  ++ K +
Sbjct: 501 LSACSQIKSLKLGKEVHGLIIRNRLERDSFVYISLLSLYIHCGELSTAHVLFDAMEDKTL 560

Query: 239 VTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 284
           V+WN M++GY Q+G  E+AL LF +M   G++P  I+ +++  AC+
Sbjct: 561 VSWNTMVNGYLQNGFPERALSLFRQMVLYGVQPCEISMMSVFGACS 606



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 72/287 (25%), Positives = 132/287 (45%), Gaps = 37/287 (12%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDK-IPQPDVVSYNIMLSCILLNSDDVVAAFDFF 62
           K    WN+V++ +++      +  E+F K I +  ++  N    C       VV A    
Sbjct: 146 KNLFQWNAVISSYSRNE-LYHNVLEMFVKMITESGLLPDNFTFPC-------VVKACAGV 197

Query: 63  QRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVE 122
             + +         + G V K  + +  D+F++         +A++S Y   G +  A+ 
Sbjct: 198 SEVQV------GLAVHGLVVKTRLVE--DVFVS---------NALVSFYGTNGSVSDALR 240

Query: 123 LFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIG----LGIRPNASSLSSV 178
           +FK+ P +++V+W +MI  +      +N  +E+   LL  M+     +   P+ ++L++V
Sbjct: 241 VFKIMPERNLVSWNSMIRVFS-----DNGLSEECFLLLGQMMEKDDEIAFTPDVATLATV 295

Query: 179 LLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDV 238
           L  C+    + +GK VH L  K  L K+      L+ MY KCG + DA  +F     K+V
Sbjct: 296 LPVCARDREIGVGKGVHGLAMKLSLDKEVVVNNALMDMYSKCGCINDAQVIFKLNNNKNV 355

Query: 239 VTWNAMISGYAQHGKGEKALRLFDKMKDEG--MKPDSITFVALLLAC 283
           V+WN M+ G++  G   K   L  +M   G  ++ D +T +  +  C
Sbjct: 356 VSWNTMVGGFSAAGDIHKTFDLLRQMLAGGGDLRADEVTILNAVPVC 402



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 52/184 (28%), Positives = 94/184 (51%), Gaps = 10/184 (5%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKL-LRMM 163
           + +I+ Y  CG  D +  +F     K++  W A+IS Y +     N    + L++ ++M+
Sbjct: 121 TRVITMYSMCGSPDDSRSVFDALRKKNLFQWNAVISSYSR-----NELYHNVLEMFVKMI 175

Query: 164 IGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDL 223
              G+ P+  +   V+  C+ +S +Q+G  VH LV K+ L +D      L+S Y   G +
Sbjct: 176 TESGLLPDNFTFPCVVKACAGVSEVQVGLAVHGLVVKTRLVEDVFVSNALVSFYGTNGSV 235

Query: 224 EDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKM--KDE--GMKPDSITFVAL 279
            DA ++F  +  +++V+WN+MI  ++ +G  E+   L  +M  KD+     PD  T   +
Sbjct: 236 SDALRVFKIMPERNLVSWNSMIRVFSDNGLSEECFLLLGQMMEKDDEIAFTPDVATLATV 295

Query: 280 LLAC 283
           L  C
Sbjct: 296 LPVC 299



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 82/156 (52%), Gaps = 13/156 (8%)

Query: 188 LQLGKQVHQLVFKSP-LCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMIS 246
           +QLG+++HQLV +S  L  D    T +I+MY  CG  +D+  +F  +++K++  WNA+IS
Sbjct: 97  IQLGRKIHQLVSESARLSNDDVLCTRVITMYSMCGSPDDSRSVFDALRKKNLFQWNAVIS 156

Query: 247 GYAQHGKGEKALRLFDKMKDE-GMKPDSITFVALLLACN-----HAGLVDLGIQYFDSMV 300
            Y+++      L +F KM  E G+ PD+ TF  ++ AC        GL   G+     +V
Sbjct: 157 SYSRNELYHNVLEMFVKMITESGLLPDNFTFPCVVKACAGVSEVQVGLAVHGLVVKTRLV 216

Query: 301 NDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 336
            D  ++        +V   G  G + +A+ + K MP
Sbjct: 217 EDVFVS------NALVSFYGTNGSVSDALRVFKIMP 246


>gi|413923915|gb|AFW63847.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
          Length = 1274

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 217/626 (34%), Positives = 329/626 (52%), Gaps = 87/626 (13%)

Query: 1   MNVKTTVNWNSVLAGFA---------------KQRGKLK-DAQELFDKIP---------Q 35
           M ++  V WN++LAG+A               +  G L+ +A  L   +P         Q
Sbjct: 161 MPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQ 220

Query: 36  PDVVSYNIMLSCILLNSDDV----------------VAAFDFFQRLPIKDTASWNTMISG 79
              +    + +C+  N + V                V A   F  +P+++  +W+ +I G
Sbjct: 221 GTSIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSALIGG 280

Query: 80  FVQKKNMAKARDLF-------LAMPEKNSVSWS--------------------------- 105
           FV    M +A +LF       L      SV+ +                           
Sbjct: 281 FVLCDRMTEAFNLFKDMLVEGLCFLSATSVASALRVCASLADLHMGTQLHALIAKSGIHA 340

Query: 106 ------AMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKL 159
                 +++S Y + G +++A   F    VK  +++ A++SG      V+N  AE+   +
Sbjct: 341 DLTASNSLLSMYAKAGLINEATMFFDEIAVKDTISYGALLSGC-----VQNGKAEEAFLV 395

Query: 160 LRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCK 219
            + M    + P+ +++ S++  CSHL++LQ GK  H  V    L  +T+    LI MY K
Sbjct: 396 FKKMQACNMEPDIATMVSLIPACSHLAALQHGKCSHGSVIIRGLALETSICNSLIDMYAK 455

Query: 220 CGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVAL 279
           CG ++ + ++F ++  +DVV+WN MI+GY  HG G++A  LF  MK++G  PD +TF+ L
Sbjct: 456 CGKIDLSRQVFDKMPARDVVSWNTMIAGYGIHGLGKEATTLFLGMKNQGFAPDDVTFICL 515

Query: 280 LLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKP 339
           + AC+H+GLV  G  +FD+M + YGI  + +HY CMVDLL R G L EA   I+ MP K 
Sbjct: 516 IAACSHSGLVTEGKHWFDTMTHKYGILPRMEHYICMVDLLARGGLLDEAYQFIQSMPLKA 575

Query: 340 QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIR 399
              ++G LL ACR+HK +DL +  +  +  L P    G +V L+NI++A  ++D+ A +R
Sbjct: 576 DVRVWGALLGACRIHKNIDLGKQVSRIIQKLGP-EGTGNFVLLSNIFSAAGRFDEAAEVR 634

Query: 400 LSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLE 459
           +  K     K PGYSWIE+   +H F  GD+ HP    I+ +L  +   +K  GY  D  
Sbjct: 635 IIQKVKGFKKSPGYSWIEINGSLHAFVGGDQSHPCSRDIYHELDNIMVDIKKLGYQADTS 694

Query: 460 FALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIE 519
           F L  + EE KE+ LL+HSEKLAIAFG++ +     I V KNLRVCGDCH A KY++ + 
Sbjct: 695 FVLQDLEEEEKEKALLYHSEKLAIAFGVLSLNEDKTIFVTKNLRVCGDCHTAIKYMTLVR 754

Query: 520 KREIIVRDTTRFHHFKDGTCSCGDYW 545
            R IIVRDT RFHHFK+G CSCG++W
Sbjct: 755 NRTIIVRDTNRFHHFKNGQCSCGNFW 780



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 109/394 (27%), Positives = 178/394 (45%), Gaps = 42/394 (10%)

Query: 3   VKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFF 62
           VK    W   L      RG+L  A+++FD+IP PD  +YN ++           AA D +
Sbjct: 31  VKDKKQWQQELEQHI-SRGQLALARQVFDRIPAPDARAYNALIRAYSW-LGPFHAAIDLY 88

Query: 63  QRLPIKDTASWNTMISGFVQKK-----NMAKAR-------------DLFLAMPEKNSVSW 104
           + + ++   + N     FV K      ++   R             DLF++         
Sbjct: 89  RSM-LRFRVAPNKYTFPFVLKACSALVDLRAGRTIHAHAAAAGLHTDLFVS--------- 138

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI 164
           +A+I  YI C +   A  +F   P++ VVAW AM++GY   G   ++ A     LL M  
Sbjct: 139 TALIDLYIRCARFGPARNVFAKMPMRDVVAWNAMLAGYANHGMYHHAIAH----LLDMQD 194

Query: 165 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTAL---TPLISMYCKCG 221
             G+RPNAS+L S+L   +   +L  G  +H    ++ L ++   +   T L+ MY KC 
Sbjct: 195 HGGLRPNASTLVSLLPLLAQHGALFQGTSIHAYCLRACLEQNEEQVLIGTALLDMYAKCK 254

Query: 222 DLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVA-LL 280
            L  AC++F  +  ++ VTW+A+I G+    +  +A  LF  M  EG+   S T VA  L
Sbjct: 255 QLVYACRVFHGMPVRNDVTWSALIGGFVLCDRMTEAFNLFKDMLVEGLCFLSATSVASAL 314

Query: 281 LACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQ 340
             C     + +G Q   +++   GI A       ++ +  +AG + EA     ++  K  
Sbjct: 315 RVCASLADLHMGTQ-LHALIAKSGIHADLTASNSLLSMYAKAGLINEATMFFDEIAVKDT 373

Query: 341 PAIFGTLLSACRVHKRLDLA--EFAAMNLFNLNP 372
            + +G LLS C  + + + A   F  M   N+ P
Sbjct: 374 IS-YGALLSGCVQNGKAEEAFLVFKKMQACNMEP 406


>gi|334186267|ref|NP_192012.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635642|sp|Q9SV26.2|PP297_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g01030, mitochondrial; Flags: Precursor
 gi|332656570|gb|AEE81970.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 768

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 212/589 (35%), Positives = 326/589 (55%), Gaps = 61/589 (10%)

Query: 7   VNWNSVLAGFAKQRGKLKDA-------------------QELFDKIPQP----------- 36
           V WNS+L+G+A  +G  KDA                     L   + +P           
Sbjct: 191 VTWNSLLSGYA-SKGLSKDAIAVLKRMQIAGLKPSTSSISSLLQAVAEPGHLKLGKAIHG 249

Query: 37  ----DVVSYNIMLSCILLN----SDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAK 88
               + + Y++ +   L++    +  +  A   F  +  K+  +WN+++SG      +  
Sbjct: 250 YILRNQLWYDVYVETTLIDMYIKTGYLPYARMVFDMMDAKNIVAWNSLVSGLSYACLLKD 309

Query: 89  ARDLFLAMPEK----NSVSWSAMISGYIECGQLDKAVELFK------VAPVKSVVAWTAM 138
           A  L + M ++    ++++W+++ SGY   G+ +KA+++        VAP  +VV+WTA+
Sbjct: 310 AEALMIRMEKEGIKPDAITWNSLASGYATLGKPEKALDVIGKMKEKGVAP--NVVSWTAI 367

Query: 139 ISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVL--LGCSHLSSLQLGKQVHQ 196
            SG  K G   N+     LK+   M   G+ PNA+++S++L  LGC  LS L  GK+VH 
Sbjct: 368 FSGCSKNGNFRNA-----LKVFIKMQEEGVGPNAATMSTLLKILGC--LSLLHSGKEVHG 420

Query: 197 LVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEK 256
              +  L  D    T L+ MY K GDL+ A ++F  I+ K + +WN M+ GYA  G+GE+
Sbjct: 421 FCLRKNLICDAYVATALVDMYGKSGDLQSAIEIFWGIKNKSLASWNCMLMGYAMFGRGEE 480

Query: 257 ALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMV 316
            +  F  M + GM+PD+ITF ++L  C ++GLV  G +YFD M + YGI    +H +CMV
Sbjct: 481 GIAAFSVMLEAGMEPDAITFTSVLSVCKNSGLVQEGWKYFDLMRSRYGIIPTIEHCSCMV 540

Query: 317 DLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAA 376
           DLLGR+G L EA D I+ M  KP   I+G  LS+C++H+ L+LAE A   L  L P N+A
Sbjct: 541 DLLGRSGYLDEAWDFIQTMSLKPDATIWGAFLSSCKIHRDLELAEIAWKRLQVLEPHNSA 600

Query: 377 GCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELV 436
             Y+ + N+Y+ + +W+DV RIR  M+ N V     +SWI++   VH F +  + HP+  
Sbjct: 601 N-YMMMINLYSNLNRWEDVERIRNLMRNNRVRVQDLWSWIQIDQTVHIFYAEGKTHPDEG 659

Query: 437 SIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPI 496
            I+ +L +L   MK +GYVPD       + +  KE+LL+ H+EKLA+ +GLIK     PI
Sbjct: 660 DIYFELYKLVSEMKKSGYVPDTSCIHQDISDSEKEKLLMGHTEKLAMTYGLIKKKGLAPI 719

Query: 497 RVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           RV KN  +C D H   KY+S +  REI++++  R HHF+DG CSC D W
Sbjct: 720 RVVKNTNICSDSHTVAKYMSVLRNREIVLQEGARVHHFRDGKCSCNDSW 768



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 96/379 (25%), Positives = 172/379 (45%), Gaps = 51/379 (13%)

Query: 15  GFAKQRGKLKDAQELFDKIPQPDVVSYN--IMLSCILLNSDDVVAAFDFFQ--------- 63
           GF  +   L  A +LFD++P+ D +++N  +M++    N +  V  F   Q         
Sbjct: 31  GFYGRCVSLGFANKLFDEMPKRDDLAWNEIVMVNLRSGNWEKAVELFREMQFSGAKAYDS 90

Query: 64  --------------------------RLPIKDTASW-NTMISGFVQKKNMAKARDLFLAM 96
                                     RL ++   S  N++I  + +   +  +R +F +M
Sbjct: 91  TMVKLLQVCSNKEGFAEGRQIHGYVLRLGLESNVSMCNSLIVMYSRNGKLELSRKVFNSM 150

Query: 97  PEKNSVSWSAMISGYIECGQLDKAVELFKVAPV----KSVVAWTAMISGYMKFGYVENSW 152
            ++N  SW++++S Y + G +D A+ L     +      +V W +++SGY   G      
Sbjct: 151 KDRNLSSWNSILSSYTKLGYVDDAIGLLDEMEICGLKPDIVTWNSLLSGYASKGL----- 205

Query: 153 AEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTP 212
           ++D + +L+ M   G++P+ SS+SS+L   +    L+LGK +H  + ++ L  D    T 
Sbjct: 206 SKDAIAVLKRMQIAGLKPSTSSISSLLQAVAEPGHLKLGKAIHGYILRNQLWYDVYVETT 265

Query: 213 LISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPD 272
           LI MY K G L  A  +F  +  K++V WN+++SG +     + A  L  +M+ EG+KPD
Sbjct: 266 LIDMYIKTGYLPYARMVFDMMDAKNIVAWNSLVSGLSYACLLKDAEALMIRMEKEGIKPD 325

Query: 273 SITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLI 332
           +IT+ +L       G  +  +     M  + G+A     +T +     + G    A+ + 
Sbjct: 326 AITWNSLASGYATLGKPEKALDVIGKM-KEKGVAPNVVSWTAIFSGCSKNGNFRNALKVF 384

Query: 333 KKMP---FKPQPAIFGTLL 348
            KM      P  A   TLL
Sbjct: 385 IKMQEEGVGPNAATMSTLL 403



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/184 (29%), Positives = 96/184 (52%), Gaps = 5/184 (2%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI 164
           SA +  Y  C  L  A +LF   P +  +AW  ++   ++ G    +W E  ++L R M 
Sbjct: 27  SASMGFYGRCVSLGFANKLFDEMPKRDDLAWNEIVMVNLRSG----NW-EKAVELFREMQ 81

Query: 165 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 224
             G +   S++  +L  CS+      G+Q+H  V +  L  + +    LI MY + G LE
Sbjct: 82  FSGAKAYDSTMVKLLQVCSNKEGFAEGRQIHGYVLRLGLESNVSMCNSLIVMYSRNGKLE 141

Query: 225 DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 284
            + K+F  ++ +++ +WN+++S Y + G  + A+ L D+M+  G+KPD +T+ +LL    
Sbjct: 142 LSRKVFNSMKDRNLSSWNSILSSYTKLGYVDDAIGLLDEMEICGLKPDIVTWNSLLSGYA 201

Query: 285 HAGL 288
             GL
Sbjct: 202 SKGL 205



 Score = 65.1 bits (157), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 73/308 (23%), Positives = 123/308 (39%), Gaps = 72/308 (23%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIP----QPDVVSYNIMLSCI-LLNSDDV 55
           M+ K  V WNS+++G +     LKDA+ L  ++     +PD +++N + S    L   + 
Sbjct: 286 MDAKNIVAWNSLVSGLSYA-CLLKDAEALMIRMEKEGIKPDAITWNSLASGYATLGKPE- 343

Query: 56  VAAFDFFQRLPIKDTA----SWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWS-- 105
             A D   ++  K  A    SW  + SG  +  N   A  +F+ M E+    N+ + S  
Sbjct: 344 -KALDVIGKMKEKGVAPNVVSWTAIFSGCSKNGNFRNALKVFIKMQEEGVGPNAATMSTL 402

Query: 106 ---------------------------------AMISGYIECGQLDKAVELFKVAPVKSV 132
                                            A++  Y + G L  A+E+F     KS+
Sbjct: 403 LKILGCLSLLHSGKEVHGFCLRKNLICDAYVATALVDMYGKSGDLQSAIEIFWGIKNKSL 462

Query: 133 VAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGK 192
            +W  M+ GY  FG       E+G+    +M+  G+ P+A + +SVL  C +   +Q G 
Sbjct: 463 ASWNCMLMGYAMFGR-----GEEGIAAFSVMLEAGMEPDAITFTSVLSVCKNSGLVQEGW 517

Query: 193 QVHQLVFKSPLCKDTTALTPLISMYCKC--------GDLEDACKLFLEIQRK-DVVTWNA 243
           +   L+      +    + P I  +C C        G L++A      +  K D   W A
Sbjct: 518 KYFDLM------RSRYGIIPTIE-HCSCMVDLLGRSGYLDEAWDFIQTMSLKPDATIWGA 570

Query: 244 MISGYAQH 251
            +S    H
Sbjct: 571 FLSSCKIH 578



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/124 (30%), Positives = 59/124 (47%), Gaps = 12/124 (9%)

Query: 190 LGKQVHQLVFKSPL-CKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGY 248
           LG  +H  + K  L   DT  ++  +  Y +C  L  A KLF E+ ++D + WN ++   
Sbjct: 5   LGLTIHGGLIKRGLDNSDTRVVSASMGFYGRCVSLGFANKLFDEMPKRDDLAWNEIVMVN 64

Query: 249 AQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN-----------HAGLVDLGIQYFD 297
            + G  EKA+ LF +M+  G K    T V LL  C+           H  ++ LG++   
Sbjct: 65  LRSGNWEKAVELFREMQFSGAKAYDSTMVKLLQVCSNKEGFAEGRQIHGYVLRLGLESNV 124

Query: 298 SMVN 301
           SM N
Sbjct: 125 SMCN 128


>gi|414880744|tpg|DAA57875.1| TPA: hypothetical protein ZEAMMB73_657034, partial [Zea mays]
          Length = 1822

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 193/470 (41%), Positives = 277/470 (58%), Gaps = 7/470 (1%)

Query: 76   MISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAW 135
            ++S +    ++A +R  F  +   + V  +AM++     G +D A +LF   P +  VAW
Sbjct: 1360 VLSMYAALGDVASSRAAFAEIACPDVVCVTAMVAALAAGGDVDAARDLFDGMPQRDHVAW 1419

Query: 136  TAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVH 195
            +AMI+GYM  G      + + L L   M+  G     ++L SVL  C+ + +L  GK VH
Sbjct: 1420 SAMIAGYMHVGR-----SREALMLFDEMLSAGTTVGEATLVSVLTACAQIGTLDRGKWVH 1474

Query: 196  QLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGE 255
              V    +       T L+ MY KCG +  A ++F  +  ++V TW + +SG A +G G 
Sbjct: 1475 WYVRSRGMQMSIKLGTALVDMYSKCGAVVTAMEVFESMAERNVYTWTSAVSGLAMNGMGT 1534

Query: 256  KALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCM 315
            + L+LF +M+  G++P+ ++FVA+L  C+ AGLVD G   FDSM + YG+   P+HY CM
Sbjct: 1535 ECLQLFKRMEGAGIQPNGVSFVAVLRGCSMAGLVDEGRACFDSM-DKYGVDPWPEHYGCM 1593

Query: 316  VDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANA 375
            VDL GRAG+L +A+  I  MP +P   ++G LL+A R+H  +DL ++A   L  +   N 
Sbjct: 1594 VDLYGRAGRLDDAISFINDMPMEPHEGVWGALLNASRIHNSVDLGKYALDKLLAIESEND 1653

Query: 376  AGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPEL 435
            A  +VQL+NIYA  + W  V+R+R  MK   V K+PG+S IEV   VHEF  G R+HP  
Sbjct: 1654 A-AHVQLSNIYAESQNWKGVSRVRGMMKAKGVKKVPGWSTIEVDGKVHEFYVGGRLHPRY 1712

Query: 436  VSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTP 495
              I   L E+++R++L GY  +    L  + EE KE  +  HSEKLA+AFGLI +P    
Sbjct: 1713 NEIELMLAEMDRRLRLQGYTANTREVLFDIEEEEKEGAISLHSEKLALAFGLIVLPEDVE 1772

Query: 496  IRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
            IR+ KNLRVC DCHR  K +S +  REI++RD  RFHHFK G CSC DYW
Sbjct: 1773 IRIVKNLRVCMDCHRYIKLVSKVFNREIVMRDRNRFHHFKGGECSCRDYW 1822



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 59/256 (23%), Positives = 109/256 (42%), Gaps = 21/256 (8%)

Query: 21   GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
            G +  A++LFD +PQ D V+++ M++  +       A   F + L    T    T++S  
Sbjct: 1399 GDVDAARDLFDGMPQRDHVAWSAMIAGYMHVGRSREALMLFDEMLSAGTTVGEATLVSVL 1458

Query: 81   VQKKNMAK----------ARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVK 130
                 +             R   + M  K     +A++  Y +CG +  A+E+F+    +
Sbjct: 1459 TACAQIGTLDRGKWVHWYVRSRGMQMSIKLG---TALVDMYSKCGAVVTAMEVFESMAER 1515

Query: 131  SVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQL 190
            +V  WT+ +SG        N    + L+L + M G GI+PN  S  +VL GCS    +  
Sbjct: 1516 NVYTWTSAVSGLAM-----NGMGTECLQLFKRMEGAGIQPNGVSFVAVLRGCSMAGLVDE 1570

Query: 191  GKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF--LEIQRKDVVTWNAMISGY 248
            G+     + K  +         ++ +Y + G L+DA      + ++  + V W A+++  
Sbjct: 1571 GRACFDSMDKYGVDPWPEHYGCMVDLYGRAGRLDDAISFINDMPMEPHEGV-WGALLNAS 1629

Query: 249  AQHGKGEKALRLFDKM 264
              H   +      DK+
Sbjct: 1630 RIHNSVDLGKYALDKL 1645


>gi|125599128|gb|EAZ38704.1| hypothetical protein OsJ_23104 [Oryza sativa Japonica Group]
          Length = 1280

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 196/490 (40%), Positives = 294/490 (60%), Gaps = 13/490 (2%)

Query: 63   QRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSW----SAMISGYIECGQLD 118
            +RL + DT ++  +I    +   + +   L     +   V+     ++++  Y  CG  +
Sbjct: 797  RRLALPDTHTYPPLIQACARLLALREGECLHAEAAKNGFVTLVFVQNSLVHLYGACGLFE 856

Query: 119  KAVELFKVAPVK--SVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLS 176
             A ++F   PV+  ++V+W +M++ +       N    + L +   M+G+   P+  ++ 
Sbjct: 857  SAHKVFDEMPVRGRNLVSWNSMLNSF-----AANGRPNEVLTVFWEMLGVDFAPDGFTIV 911

Query: 177  SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR- 235
            SVL  C+   +L LG++VH  V K  L +++     LI +Y KCG + DA ++F E+   
Sbjct: 912  SVLTACAEFGALALGRRVHVYVEKVGLVENSHVSNALIDLYAKCGSVNDARRIFEEMGLG 971

Query: 236  KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQY 295
            + VV+W ++I G A +G G++AL LF  M+ E + P  IT V +L AC+H GLVD G +Y
Sbjct: 972  RTVVSWTSLIVGLAANGFGKEALELFSLMEREKLVPTEITMVGVLYACSHCGLVDDGFRY 1031

Query: 296  FDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHK 355
            FD M  DYGI+ + +H  CMVDLLGRAG++ EA D I  MP +P   ++ TLL +C +HK
Sbjct: 1032 FDRMKEDYGISPRIEHLGCMVDLLGRAGRVEEAYDYIITMPLEPNAVVWRTLLGSCAMHK 1091

Query: 356  RLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSW 415
            +L+L + A   L  L+P ++ G YV L+N+YAA+  W DV  +R +M ++ V K PG+S 
Sbjct: 1092 KLELGKVAWERLVELDPGHS-GDYVLLSNLYAAVGMWADVHVLRKTMVKDRVRKNPGHSL 1150

Query: 416  IEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLL 475
            +E+   V+EF  GDR HPE   I+E L E+ +R++  GY+P     L  + EE KE  L 
Sbjct: 1151 VELRNSVYEFVMGDRSHPESEQIYEMLAEIAERLRREGYIPRTSNVLADIEEEEKETALN 1210

Query: 476  FHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFK 535
            +HSE+LAIAF L+K   G PIR+ KNLR+CGDCH A   IS +  REIIVRD +RFHHF+
Sbjct: 1211 YHSERLAIAFALLKSLPGIPIRIIKNLRMCGDCHVAFNLISKVYDREIIVRDRSRFHHFQ 1270

Query: 536  DGTCSCGDYW 545
             G CSC DYW
Sbjct: 1271 GGACSCKDYW 1280


>gi|357160830|ref|XP_003578890.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Brachypodium distachyon]
          Length = 631

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 199/544 (36%), Positives = 315/544 (57%), Gaps = 17/544 (3%)

Query: 11  SVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDT 70
           ++L     + G+   A+ +FD +    +VS+N M++    + +DV  A   F R+  + T
Sbjct: 96  NILINLYTKCGRNDCARLVFDIMHVRSIVSWNTMIAGYTHSGEDV-QALKLFSRMHREGT 154

Query: 71  A----SWNTMISGFVQKKNMAKARDLF-----LAMPEKNSVSWSAMISGYIECGQLDKAV 121
                + ++ I     K  + + + L      LA+ + NS   +A++  Y +C  +  A 
Sbjct: 155 HMSEFTLSSTICACAAKYAINECKQLHTIALKLAL-DSNSFVGTAILDVYAKCNMIKDAC 213

Query: 122 ELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLG 181
            +F+  P +++V W+++ +GY     V+N   E+ L L R     G+     +LS++L  
Sbjct: 214 WVFEKMPERTLVTWSSLFAGY-----VQNGLHEEALHLFRCAQREGVELTEFTLSAILSA 268

Query: 182 CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTW 241
           C+ L+    G Q+H ++ K     +      L+ +Y +CG +E A  LF  ++ K+VV W
Sbjct: 269 CASLALKIEGIQLHAVILKCGFHGNFFVAASLVDVYARCGQIEKAYALFAYMEHKNVVIW 328

Query: 242 NAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN 301
           NAMI+ +++H    +A+ LF+KM+  G+ P+ +T++++L  C+HAGLV+ G  YF  +++
Sbjct: 329 NAMIASFSRHAHSWEAMILFEKMQQLGIFPNEVTYLSVLSVCSHAGLVEKGRHYFSLLMS 388

Query: 302 DYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAE 361
           D  +     HY+CMVD+LGR+GK  EA +L+ KMPF+P  +++G+LL +CR +  + LA 
Sbjct: 389 DRTVEPNVLHYSCMVDVLGRSGKTDEAWELLNKMPFEPTASMWGSLLGSCRNYNNIRLAR 448

Query: 362 FAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTV 421
            AA  LF L P N  G +V L+N+YAA   W++V   R  +K++   K  G SWIE    
Sbjct: 449 IAAEQLFQLEPDN-GGNHVLLSNVYAASGNWENVLMARKYLKDSGAKKEMGRSWIEAKGK 507

Query: 422 VHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKL 481
           VH F  G+R HP +  I+ KL+E+   M+       +E  LH V  E KE+LL  HSEKL
Sbjct: 508 VHVFVVGERKHPRITDIYNKLEEIYHEMRKFARRTSIECDLHDVHAEQKEELLKHHSEKL 567

Query: 482 AIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSC 541
           A++FGLI +P   PI + KNLR+CGDCH   K  + I +R +IVRDT RFHHFKDG+CSC
Sbjct: 568 ALSFGLISLPSNIPIIIHKNLRICGDCHSFMKIAAHITERLVIVRDTNRFHHFKDGSCSC 627

Query: 542 GDYW 545
           GD+W
Sbjct: 628 GDFW 631



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 72/241 (29%), Positives = 125/241 (51%), Gaps = 10/241 (4%)

Query: 100 NSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAED--GL 157
           ++++ + +I+ Y +CG+ D A  +F +  V+S+V+W  MI+GY   G       ED   L
Sbjct: 91  DTLTCNILINLYTKCGRNDCARLVFDIMHVRSIVSWNTMIAGYTHSG-------EDVQAL 143

Query: 158 KLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMY 217
           KL   M   G   +  +LSS +  C+   ++   KQ+H +  K  L  ++   T ++ +Y
Sbjct: 144 KLFSRMHREGTHMSEFTLSSTICACAAKYAINECKQLHTIALKLALDSNSFVGTAILDVY 203

Query: 218 CKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFV 277
            KC  ++DAC +F ++  + +VTW+++ +GY Q+G  E+AL LF   + EG++    T  
Sbjct: 204 AKCNMIKDACWVFEKMPERTLVTWSSLFAGYVQNGLHEEALHLFRCAQREGVELTEFTLS 263

Query: 278 ALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPF 337
           A+L AC    L   GIQ   +++   G          +VD+  R G++ +A  L   M  
Sbjct: 264 AILSACASLALKIEGIQ-LHAVILKCGFHGNFFVAASLVDVYARCGQIEKAYALFAYMEH 322

Query: 338 K 338
           K
Sbjct: 323 K 323



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 59/114 (51%), Gaps = 2/114 (1%)

Query: 171 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 230
           + S++S  L  C+   SL +GK  H L     L  DT     LI++Y KCG   D  +L 
Sbjct: 56  DVSAISQRLQLCAKRKSLLVGKSCHGLAIHFGLVTDTLTCNILINLYTKCGR-NDCARLV 114

Query: 231 LEIQR-KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC 283
            +I   + +V+WN MI+GY   G+  +AL+LF +M  EG      T  + + AC
Sbjct: 115 FDIMHVRSIVSWNTMIAGYTHSGEDVQALKLFSRMHREGTHMSEFTLSSTICAC 168


>gi|357480925|ref|XP_003610748.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512083|gb|AES93706.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 828

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 214/553 (38%), Positives = 309/553 (55%), Gaps = 22/553 (3%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDA----QELFDKIPQPDVVSYNIMLSCIL-------LNS 52
           K  V +N++++ +  Q G   +      E+  K  +PD V+   MLS I        L+ 
Sbjct: 287 KNLVMYNTIMSNYV-QHGLAGEVLVVLDEMLQKGQRPDKVT---MLSTIAACAQLGDLSV 342

Query: 53  DDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYI 112
                A+ F   L   D  S N +I  +++      A  +F +M  K  V+W+++I+G +
Sbjct: 343 GKSSHAYVFRNGLERLDNIS-NAIIDMYMKCGKREAACKVFDSMSNKTVVTWNSLIAGLV 401

Query: 113 ECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNA 172
             G+L+ A+ +F   P  ++V+W  MI        V+ S  E+ + LLR M   GI+ + 
Sbjct: 402 RDGELELALRIFGEMPESNLVSWNTMIGAM-----VQASMFEEAIDLLREMQNQGIKGDR 456

Query: 173 SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLE 232
            ++  +   C +L +L L K ++  + K+ +  D    T L+ M+ +CGD  +A ++F  
Sbjct: 457 VTMVGIASACGYLGALDLAKWIYTYIEKNDIHIDMQLGTALVDMFSRCGDPLNAMRVFEN 516

Query: 233 IQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 292
           ++++DV  W A I   A  G  + A+ LFD+M  + +K D   FVALL A +H G VD G
Sbjct: 517 MEKRDVSAWTAAIRVKAVEGNAKGAIELFDEMLKQDVKADDFVFVALLTAFSHGGYVDQG 576

Query: 293 IQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACR 352
            Q F +M   +G++ +  HY CMVDLLGRAG L EA DL+K MP KP   I+G+ L+ACR
Sbjct: 577 RQLFWAMEKIHGVSPQIVHYGCMVDLLGRAGLLEEAFDLMKSMPIKPNDVIWGSFLAACR 636

Query: 353 VHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPG 412
            HK ++ A +A   +  L P    G +V L+NIYA+  KW+DVAR+RL MKE    K+ G
Sbjct: 637 KHKNVEFANYADEKITQLAP-EKVGIHVLLSNIYASAGKWNDVARVRLQMKEKGFQKVAG 695

Query: 413 YSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQ 472
            S IEV  ++ EF SGD  H E   I   L+E+  R+   GYVPD    L  V E+ KE 
Sbjct: 696 SSSIEVHGLIREFTSGDESHTENAQIGLMLQEINCRISQVGYVPDTTNVLVDVDEQEKEH 755

Query: 473 LLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFH 532
           LL  HSEKLA+A+GLI    G PIRV KNLR+C DCH   K +S +  REI VRD  R+H
Sbjct: 756 LLSRHSEKLAMAYGLINTGKGIPIRVVKNLRMCSDCHSFAKLVSKLYGREITVRDNNRYH 815

Query: 533 HFKDGTCSCGDYW 545
            FK+G CSC D+W
Sbjct: 816 FFKEGFCSCRDFW 828



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 73/267 (27%), Positives = 136/267 (50%), Gaps = 17/267 (6%)

Query: 72  SWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKS 131
           S    + G V K  M   +DLF+A         +++I  Y  CG++D   ++F     ++
Sbjct: 139 SEGVQVHGVVVK--MGLVKDLFVA---------NSLIHFYAACGKVDLGRKVFDEMLERN 187

Query: 132 VVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLG 191
           VV+WT++I+GY        + A++ + L   M+ +G+ PN  ++   +  C+ L  L+LG
Sbjct: 188 VVSWTSLINGYSVV-----NMAKEAVCLFFEMVEVGVEPNPVTMVCAISACAKLKDLELG 242

Query: 192 KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQH 251
           K+V  L+ +  +  +T  +  L+ MY KCGD+    ++F E   K++V +N ++S Y QH
Sbjct: 243 KKVCNLMTELGVKSNTLVVNALLDMYMKCGDMYAVREIFDEFSDKNLVMYNTIMSNYVQH 302

Query: 252 GKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDH 311
           G   + L + D+M  +G +PD +T ++ + AC   G + +G +   + V   G+    + 
Sbjct: 303 GLAGEVLVVLDEMLQKGQRPDKVTMLSTIAACAQLGDLSVG-KSSHAYVFRNGLERLDNI 361

Query: 312 YTCMVDLLGRAGKLVEAVDLIKKMPFK 338
              ++D+  + GK   A  +   M  K
Sbjct: 362 SNAIIDMYMKCGKREAACKVFDSMSNK 388



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 87/345 (25%), Positives = 150/345 (43%), Gaps = 78/345 (22%)

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAK-ARDLFLAMPE---------------------- 98
           F  +  ++  SW ++I+G+    NMAK A  LF  M E                      
Sbjct: 180 FDEMLERNVVSWTSLINGY-SVVNMAKEAVCLFFEMVEVGVEPNPVTMVCAISACAKLKD 238

Query: 99  -----------------KNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISG 141
                             N++  +A++  Y++CG +    E+F     K++V +  ++S 
Sbjct: 239 LELGKKVCNLMTELGVKSNTLVVNALLDMYMKCGDMYAVREIFDEFSDKNLVMYNTIMSN 298

Query: 142 YMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKS 201
           Y++ G      A + L +L  M+  G RP+  ++ S +  C+ L  L +GK  H  VF++
Sbjct: 299 YVQHGL-----AGEVLVVLDEMLQKGQRPDKVTMLSTIAACAQLGDLSVGKSSHAYVFRN 353

Query: 202 PLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLF 261
            L +       +I MY KCG  E ACK+F  +  K VVTWN++I+G  + G+ E ALR+F
Sbjct: 354 GLERLDNISNAIIDMYMKCGKREAACKVFDSMSNKTVVTWNSLIAGLVRDGELELALRIF 413

Query: 262 D-------------------------------KMKDEGMKPDSITFVALLLACNHAGLVD 290
                                           +M+++G+K D +T V +  AC + G +D
Sbjct: 414 GEMPESNLVSWNTMIGAMVQASMFEEAIDLLREMQNQGIKGDRVTMVGIASACGYLGALD 473

Query: 291 LGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335
           L  ++  + +    I       T +VD+  R G  + A+ + + M
Sbjct: 474 LA-KWIYTYIEKNDIHIDMQLGTALVDMFSRCGDPLNAMRVFENM 517



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 67/271 (24%), Positives = 130/271 (47%), Gaps = 11/271 (4%)

Query: 84  KNMAKARDLFLAMPEKNSVSWSAMISGYIECG---QLDKAVELFKVAPVKSVVAWT--AM 138
           K + + + L   M +K   + + +I+  ++ G    L+ A+  FK         +T   +
Sbjct: 33  KTLIELKQLHCNMLKKGVFNINKLIAACVQMGTHESLNYALNAFKEDEGTKCSLYTCNTL 92

Query: 139 ISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLV 198
           I GY   G  +    E     L M+I +GI P+  +   +L  CS + +   G QVH +V
Sbjct: 93  IRGYAASGLCK----EAIFIYLHMIIVMGIVPDNFTFPFLLSACSKIMAFSEGVQVHGVV 148

Query: 199 FKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKAL 258
            K  L KD      LI  Y  CG ++   K+F E+  ++VV+W ++I+GY+     ++A+
Sbjct: 149 VKMGLVKDLFVANSLIHFYAACGKVDLGRKVFDEMLERNVVSWTSLINGYSVVNMAKEAV 208

Query: 259 RLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDL 318
            LF +M + G++P+ +T V  + AC     ++LG +  + M  + G+ +       ++D+
Sbjct: 209 CLFFEMVEVGVEPNPVTMVCAISACAKLKDLELGKKVCNLMT-ELGVKSNTLVVNALLDM 267

Query: 319 LGRAGKLVEAVDLIKKMPFKPQPAIFGTLLS 349
             + G +    ++  +   K    ++ T++S
Sbjct: 268 YMKCGDMYAVREIFDEFSDK-NLVMYNTIMS 297



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 64/271 (23%), Positives = 120/271 (44%), Gaps = 25/271 (9%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M+ KT V WNS++AG  +  G+L+ A  +F ++P+ ++VS+N M+   ++ +     A D
Sbjct: 385 MSNKTVVTWNSLIAGLVRD-GELELALRIFGEMPESNLVSWNTMIGA-MVQASMFEEAID 442

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDL---FLAMPEKNSVS-----WSAMISGYI 112
             + +  +        + G         A DL        EKN +       +A++  + 
Sbjct: 443 LLREMQNQGIKGDRVTMVGIASACGYLGALDLAKWIYTYIEKNDIHIDMQLGTALVDMFS 502

Query: 113 ECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNA 172
            CG    A+ +F+    + V AWTA I    +   VE + A+  ++L   M+   ++ + 
Sbjct: 503 RCGDPLNAMRVFENMEKRDVSAWTAAI----RVKAVEGN-AKGAIELFDEMLKQDVKADD 557

Query: 173 SSLSSVLLGCSHLSSLQLGKQVHQLVFK----SPLCKDTTALTPLISMYCKCGDLEDACK 228
               ++L   SH   +  G+Q+   + K    SP       +  L+    + G LE+A  
Sbjct: 558 FVFVALLTAFSHGGYVDQGRQLFWAMEKIHGVSPQIVHYGCMVDLLG---RAGLLEEAFD 614

Query: 229 LF--LEIQRKDVVTWNAMISGYAQHGKGEKA 257
           L   + I+  DV+ W + ++   +H   E A
Sbjct: 615 LMKSMPIKPNDVI-WGSFLAACRKHKNVEFA 644


>gi|125588235|gb|EAZ28899.1| hypothetical protein OsJ_12939 [Oryza sativa Japonica Group]
          Length = 611

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 205/542 (37%), Positives = 305/542 (56%), Gaps = 20/542 (3%)

Query: 17  AKQRGKLKDAQELFDKIPQP-DVVSYNIMLSCILLNSDDVVAAFD---FFQRL----PIK 68
           A+    L  A+++FD+IP P DVV YN +L            A +    F R+       
Sbjct: 77  AEAPAHLAYARQVFDRIPHPGDVVWYNTLLRGYARGGWGGGCAEEAARVFVRMMEEGVAP 136

Query: 69  DTASWNTMISGFVQKKNMAKARDL----FLAMPEKNSVSWSAMISGYIECGQLDKAVELF 124
           DT ++ +++      +   + R        A   ++      +I+ Y ECG +  A  +F
Sbjct: 137 DTYTFVSLLKACASARAGEEGRQAHGVAVKAGAAEHEYVAPTLINMYAECGDVRAARVMF 196

Query: 125 KVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSH 184
                + VV++ AMI+       V +S   + L L R M   G++P + +L SVL  C+ 
Sbjct: 197 DRMDGECVVSYNAMITAS-----VRSSLPGEALVLFREMQAKGLKPTSVTLISVLSACAL 251

Query: 185 LSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAM 244
           L +L+LG+ +H  + K  L       T LI MY KCG LEDA  +F +++ +D   W+ M
Sbjct: 252 LGALELGRWIHDYIRKMRLDSLVKVNTALIDMYAKCGSLEDAIGVFQDMESRDKQAWSVM 311

Query: 245 ISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYG 304
           +  YA HG G +A+ +F++MK +GMKPD +TF+ +L AC+H+G+V  G+QYFDSM  +YG
Sbjct: 312 MVAYANHGYGREAISMFEEMKKQGMKPDDVTFLGVLYACSHSGMVSEGLQYFDSM-REYG 370

Query: 305 IAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAA 364
           I +   HY C+ DLL R+G+L  A   I ++P KP   ++ TLLSAC  H  +D+ +   
Sbjct: 371 IVSGIKHYGCVTDLLARSGQLERAYKFIDELPIKPTAILWRTLLSACAGHGDVDMGKRVF 430

Query: 365 MNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHE 424
             +  L+ ++  G YV  +N+ A   +W+++  +R  M E  VVK+PG S IE+  +VHE
Sbjct: 431 ERILELDDSH-GGDYVIFSNLCANTGRWEEMNMVRKLMSEKGVVKVPGCSSIEIDNMVHE 489

Query: 425 FRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHA-VGEEVKEQLLLFHSEKLAI 483
           F +GD  HP        + E+ +++KL GYVP+     H  +GEE K   L +HSEKLAI
Sbjct: 490 FFAGDGSHPHSQEARRMVDEVIEQLKLVGYVPNTSHVFHVEMGEEEKATSLRYHSEKLAI 549

Query: 484 AFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGD 543
           +FGL+    GT +R+ KNLRVC DCH   K +S +  R II+RD  RFHHF+DG CSCGD
Sbjct: 550 SFGLLNTAPGTTLRIVKNLRVCPDCHSMAKLVSMVFNRRIILRDLNRFHHFEDGVCSCGD 609

Query: 544 YW 545
           YW
Sbjct: 610 YW 611


>gi|7488184|pir||E71401 probable selenium-binding protein - Arabidopsis thaliana
          Length = 1070

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 197/467 (42%), Positives = 283/467 (60%), Gaps = 33/467 (7%)

Query: 85  NMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMK 144
           N AKA  +F ++  KN++SW+AM+SGY + G+ ++A+ELF++ PVK++ +WTA+ISG+++
Sbjct: 94  NSAKA--VFDSIRVKNTISWTAMVSGYAKSGRKEEALELFRILPVKNLYSWTALISGFVQ 151

Query: 145 FG------YVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLV 198
            G       V      + + +L  ++          LSS++  C++L++   G+QVH   
Sbjct: 152 SGKGLEAFSVFTEMRRERVDILDPLV----------LSSIVGACANLAASIAGRQVHG-- 199

Query: 199 FKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKAL 258
                         LI MY KC D+  A  +F  ++ +DVV+W ++I G AQHG+ EKAL
Sbjct: 200 ------------NALIDMYAKCSDVIAAKDIFSRMRHRDVVSWTSLIVGMAQHGQAEKAL 247

Query: 259 RLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDL 318
            L+D M   G+KP+ +TFV L+ AC+H G V+ G + F SM  DYGI     HYTC++DL
Sbjct: 248 ALYDDMVSHGVKPNEVTFVGLIYACSHVGFVEKGRELFQSMTKDYGIRPSLQHYTCLLDL 307

Query: 319 LGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGC 378
           LGR+G L EA +LI  MPF P    +  LLSAC+   R  +    A +L +         
Sbjct: 308 LGRSGLLDEAENLIHTMPFPPDEPTWAALLSACKRQGRGQMGIRIADHLVSSFKLKDPST 367

Query: 379 YVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSI 438
           Y+ L+NIYA+   W  V+  R  + E  V K PG+S +EV      F +G+  HP    I
Sbjct: 368 YILLSNIYASASLWGKVSEARRKLGEMEVRKDPGHSSVEVRKETEVFYAGETSHPLKEDI 427

Query: 439 HEKLKELEKRMKLA-GYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIR 497
              LK+LE+ M++  GYVPD  + LH + E+ KE+LL +HSE+ A+A+GL+K   GTPIR
Sbjct: 428 FRLLKKLEEEMRIRNGYVPDTSWILHDMDEQEKEKLLFWHSERSAVAYGLLKAVPGTPIR 487

Query: 498 VFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDY 544
           + KNLRVCGDCH   K+IS I +REIIVRD TR+HHFK G CSC D+
Sbjct: 488 IVKNLRVCGDCHVVLKHISEITEREIIVRDATRYHHFKGGKCSCNDF 534



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 67/307 (21%), Positives = 136/307 (44%), Gaps = 66/307 (21%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           + VK T++W ++++G+AK  G+ ++A ELF  +P  ++ S+  ++S   + S   + AF 
Sbjct: 103 IRVKNTISWTAMVSGYAKS-GRKEEALELFRILPVKNLYSWTALISG-FVQSGKGLEAFS 160

Query: 61  FF-----QRLPIKD---------------------TASWNTMISGFVQKKNMAKARDLFL 94
            F     +R+ I D                         N +I  + +  ++  A+D+F 
Sbjct: 161 VFTEMRRERVDILDPLVLSSIVGACANLAASIAGRQVHGNALIDMYAKCSDVIAAKDIFS 220

Query: 95  AMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAE 154
            M  ++ VSW+++I G  + GQ +KA+ L+                             +
Sbjct: 221 RMRHRDVVSWTSLIVGMAQHGQAEKALALY-----------------------------D 251

Query: 155 DGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDT-TALTPL 213
           D       M+  G++PN  +   ++  CSH+  ++ G+++ Q + K    + +    T L
Sbjct: 252 D-------MVSHGVKPNEVTFVGLIYACSHVGFVEKGRELFQSMTKDYGIRPSLQHYTCL 304

Query: 214 ISMYCKCGDLEDACKLFLEIQ-RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPD 272
           + +  + G L++A  L   +    D  TW A++S   + G+G+  +R+ D +       D
Sbjct: 305 LDLLGRSGLLDEAENLIHTMPFPPDEPTWAALLSACKRQGRGQMGIRIADHLVSSFKLKD 364

Query: 273 SITFVAL 279
             T++ L
Sbjct: 365 PSTYILL 371



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 36/94 (38%), Positives = 56/94 (59%)

Query: 168 IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC 227
           +RP+    S+++  C++L S+  G+QVH     S    D    + L+ MY KCG L  A 
Sbjct: 38  LRPDDFVFSALVKACANLGSIDHGRQVHCHFIVSEYANDEVVKSSLVDMYAKCGLLNSAK 97

Query: 228 KLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLF 261
            +F  I+ K+ ++W AM+SGYA+ G+ E+AL LF
Sbjct: 98  AVFDSIRVKNTISWTAMVSGYAKSGRKEEALELF 131


>gi|302805077|ref|XP_002984290.1| hypothetical protein SELMODRAFT_119978 [Selaginella moellendorffii]
 gi|300148139|gb|EFJ14800.1| hypothetical protein SELMODRAFT_119978 [Selaginella moellendorffii]
          Length = 448

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 180/448 (40%), Positives = 280/448 (62%), Gaps = 7/448 (1%)

Query: 98  EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGL 157
           E  +V  +++++ Y  C  L  A  +F+  P K  + W A+++ Y + GY      ++ L
Sbjct: 8   EAETVVGTSLVNMYGRCHSLGNARLVFERIPCKDAITWNAIVTAYAQDGY-----GKEAL 62

Query: 158 KLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMY 217
           ++ + M   G++  +++  SVL  C+  S+L LG+ +HQ +  + L ++    T L++MY
Sbjct: 63  EIFQRMQQEGVKTGSATFISVLEACASTSALALGRVIHQNLVANGLDRELIVATALVNMY 122

Query: 218 CKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFV 277
            KCG L +A ++F +++  DVV W A+++G AQHG  E++  L  +M+ EG+KP+++TF+
Sbjct: 123 AKCGKLVEAREVFDQMEGMDVVAWTAIVAGSAQHGHIEESKDLMRRMELEGIKPNNVTFL 182

Query: 278 ALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPF 337
           +L+ AC+H+G +D     F +M  D+G    P+H+ C++DLLGR G+L EA ++I  MPF
Sbjct: 183 SLVFACSHSGYLDEARDCFIAMA-DHGFFPLPEHFRCVIDLLGRGGRLEEAQEVIDTMPF 241

Query: 338 KPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVAR 397
           +P    + T+LSACR+ K +  AE AA   + + P   +  Y+ ++N+YAA+++WDDV +
Sbjct: 242 EPGLTAWLTMLSACRLQKDVLRAEIAAEKCYEIEPTRPSA-YLLMSNLYAALERWDDVKK 300

Query: 398 IRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPD 457
           +R  M+   V K PG S IEV   +HEF + ++ HP+   I+E+L++L   +K AGYVPD
Sbjct: 301 VRRLMERRGVKKEPGLSCIEVKNRLHEFGAANKSHPQKDLIYEELRKLTLEIKEAGYVPD 360

Query: 458 LEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISA 517
               LH V EE K+  L  HSE+LA+ +GLI  P GT + V  NLR+C DCH A KYIS 
Sbjct: 361 TSLVLHNVDEETKQATLFHHSERLAVVYGLINTPPGTSLCVVNNLRMCSDCHTAFKYIST 420

Query: 518 IEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           I  REI+VRD  RFH F  G CSC DYW
Sbjct: 421 ISNREIVVRDANRFHTFATGGCSCKDYW 448



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/139 (35%), Positives = 83/139 (59%), Gaps = 1/139 (0%)

Query: 197 LVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEK 256
           +V K  L  +T   T L++MY +C  L +A  +F  I  KD +TWNA+++ YAQ G G++
Sbjct: 1   MVEKVGLEAETVVGTSLVNMYGRCHSLGNARLVFERIPCKDAITWNAIVTAYAQDGYGKE 60

Query: 257 ALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMV 316
           AL +F +M+ EG+K  S TF+++L AC     + LG     ++V + G+  +    T +V
Sbjct: 61  ALEIFQRMQQEGVKTGSATFISVLEACASTSALALGRVIHQNLVAN-GLDRELIVATALV 119

Query: 317 DLLGRAGKLVEAVDLIKKM 335
           ++  + GKLVEA ++  +M
Sbjct: 120 NMYAKCGKLVEAREVFDQM 138



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 72/162 (44%), Gaps = 44/162 (27%)

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWS---------------- 105
           F+R+P KD  +WN +++ + Q     +A ++F  M ++   + S                
Sbjct: 34  FERIPCKDAITWNAIVTAYAQDGYGKEALEIFQRMQQEGVKTGSATFISVLEACASTSAL 93

Query: 106 -----------------------AMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGY 142
                                  A+++ Y +CG+L +A E+F       VVAWTA+++G 
Sbjct: 94  ALGRVIHQNLVANGLDRELIVATALVNMYAKCGKLVEAREVFDQMEGMDVVAWTAIVAGS 153

Query: 143 MKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSH 184
            + G++E S       L+R M   GI+PN  +  S++  CSH
Sbjct: 154 AQHGHIEES-----KDLMRRMELEGIKPNNVTFLSLVFACSH 190


>gi|297744892|emb|CBI38389.3| unnamed protein product [Vitis vinifera]
          Length = 614

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 211/538 (39%), Positives = 305/538 (56%), Gaps = 31/538 (5%)

Query: 26  AQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKN 85
           A  +F     P+V  Y  ++    ++S + + A   + R+  +     N +++  +    
Sbjct: 90  ASRIFQYTHNPNVYLYTALIDG-FVSSGNYLEAIQLYSRMLHESILPDNYLMASIL---- 144

Query: 86  MAKARDLFLAMPEKNSVSWSAMISG--------------YIECGQLDKAVELFKVAP--- 128
             KA    LA+ E   V   A+  G              Y +CG+L  A  +F+  P   
Sbjct: 145 --KACGSQLALREGREVHSRALKLGFSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDV 202

Query: 129 -VKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSS 187
             K  V WTAMI G+     V N      L+  R M G  +RPN  ++  VL  CS L +
Sbjct: 203 VAKDTVCWTAMIDGF-----VRNEETNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGA 257

Query: 188 LQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISG 247
           L++G+ VH  + K  +  +      LI+MY +CG +++A  +F E++ +DV+T+N MISG
Sbjct: 258 LEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISG 317

Query: 248 YAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAA 307
            + +GK  +A+ LF  M    ++P ++TFV +L AC+H GLVD G + F SM  DY +  
Sbjct: 318 LSMNGKSRQAIELFRVMVGRRLRPTNVTFVGVLNACSHGGLVDFGFEIFHSMARDYRVEP 377

Query: 308 KPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNL 367
           + +HY CMVDLLGR G+L EA DLI+ M   P   + GTLLSAC++HK L+L E  A  L
Sbjct: 378 QIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVAKEL 437

Query: 368 FNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRS 427
            +   A+ +G YV L+++YA+  KW + A++R  MKE  + K PG S IEV   +HEF  
Sbjct: 438 EDRGQAD-SGTYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSIEVNNEIHEFLL 496

Query: 428 GDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGL 487
           GD  HP+   I+EKL+EL + ++L GY P+ E  L  + +  KE  L  HSE+LAI +GL
Sbjct: 497 GDLRHPQKERIYEKLEELNRLLRLEGYHPEKEVVLQDIEDGEKEWALAMHSERLAICYGL 556

Query: 488 IKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           I     T IRV KNLRVC DCH A K I+ I +R+I+VRD  RFH+F++G CSCGDYW
Sbjct: 557 ISTEPCTMIRVMKNLRVCYDCHSAIKLIAKITRRKIVVRDRNRFHYFENGACSCGDYW 614



 Score = 47.8 bits (112), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 31/143 (21%), Positives = 68/143 (47%), Gaps = 1/143 (0%)

Query: 194 VHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGK 253
           +H  + ++   +D   +  L+    KC  ++ A ++F      +V  + A+I G+   G 
Sbjct: 58  IHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGN 117

Query: 254 GEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYT 313
             +A++L+ +M  E + PD+    ++L AC     +  G +   S     G ++      
Sbjct: 118 YLEAIQLYSRMLHESILPDNYLMASILKACGSQLALREGRE-VHSRALKLGFSSNRLVRL 176

Query: 314 CMVDLLGRAGKLVEAVDLIKKMP 336
            +++L G+ G+L +A  + ++MP
Sbjct: 177 RIMELYGKCGELGDARRVFEEMP 199


>gi|125553513|gb|EAY99222.1| hypothetical protein OsI_21180 [Oryza sativa Indica Group]
          Length = 818

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 197/493 (39%), Positives = 283/493 (57%), Gaps = 15/493 (3%)

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMISGYIECGQL 117
           F  L  ++  +WN++++G+        A +L   M     + +  +W+ +I+GY   GQ 
Sbjct: 332 FDALEHRNLTTWNSLVAGYANAGRFDIALELVELMKKNRLDPDITTWNGLITGYSMNGQS 391

Query: 118 DKAVELFK----VAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNAS 173
            +AV L +         +VV+WT++ISG        N   ED       M   G++P+  
Sbjct: 392 SQAVLLLRQIKAAGVTPNVVSWTSLISGS-----CHNGEYEDSFYFCHEMQKDGVQPSLV 446

Query: 174 SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI 233
           ++S +L  C+ L+  + GK++H    +     D    T LI MY K G L  A  +F  I
Sbjct: 447 TMSVLLRACAGLALQKKGKELHCFALRRAYDCDMVVSTALIDMYSKGGSLVSAKVIFESI 506

Query: 234 QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGI 293
           Q+K++V  NAM++G A HG+G +A+ LF  M + G+KPDSITF ALL AC   GLV  G 
Sbjct: 507 QQKNLVLCNAMLTGLAVHGQGREAIELFHDMWNSGLKPDSITFTALLTACRSMGLVTEGW 566

Query: 294 QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRV 353
           +YFD M   YG+    ++Y CMVDLL R G L EA+D I++ P  P  + +G LL+ C +
Sbjct: 567 EYFDGMETKYGVKPTTENYACMVDLLARCGYLDEAMDFIERSPIDPGASHWGALLTGCSI 626

Query: 354 HKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGY 413
           H  L LAE AA NLF L P N+A  Y+ + N+Y   + +D+   ++ +MK   V   PG+
Sbjct: 627 HGNLALAEVAARNLFRLEPYNSAN-YLLMMNLYEYERMYDEAESLKYAMKARGVDSRPGW 685

Query: 414 SWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQL 473
           SWI++   +H F    + HPE   I+E+L  L  ++K AGYVPD     + V EE KE+L
Sbjct: 686 SWIQIEQGIHVFEVDGKPHPETAEIYEELIRLVFQIKKAGYVPDTSCIAYNVQEEEKEKL 745

Query: 474 LLFHSEKLAIAFGLIKVPLG-TPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFH 532
           LL H+EKLAI +GLI+      P+RV KN R+C DCH   K+IS++  R+II+RD  RFH
Sbjct: 746 LLGHTEKLAITYGLIRSDASRAPVRVMKNTRMCNDCHEVAKHISSLCDRQIILRDAVRFH 805

Query: 533 HFKDGTCSCGDYW 545
           HF DG CSC DYW
Sbjct: 806 HFVDGKCSCNDYW 818



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 59/205 (28%), Positives = 111/205 (54%), Gaps = 9/205 (4%)

Query: 80  FVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELF----KVAPVKSVVAW 135
           + +  ++A A  +  AM   + V W+A+++     G +D A+EL     +  P  +V  W
Sbjct: 183 YAENADVAAATRVLDAMGAGSVVPWNAVVACCARLGLVDDALELAARMSRSGPEPNVATW 242

Query: 136 TAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVH 195
             ++SG  + G        + L ++  M+  G+RP+A+++SS+L   ++   L+ G ++H
Sbjct: 243 NTVLSGCSRHGR-----DREALGVVASMLKQGLRPDATTVSSLLKSVANTGLLRHGMEIH 297

Query: 196 QLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGE 255
               ++ L  D    T L+ MY KCG L+ A K+F  ++ +++ TWN++++GYA  G+ +
Sbjct: 298 CFFLRNQLEPDVYTGTALVDMYAKCGRLDCAQKVFDALEHRNLTTWNSLVAGYANAGRFD 357

Query: 256 KALRLFDKMKDEGMKPDSITFVALL 280
            AL L + MK   + PD  T+  L+
Sbjct: 358 IALELVELMKKNRLDPDITTWNGLI 382



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 66/119 (55%), Gaps = 9/119 (7%)

Query: 213 LISMYCKCGDLEDACKLFLEIQRK----DVVTWNAMISGYAQHGKGEKALRLFDKMKDEG 268
           +++   + G ++DA +L   + R     +V TWN ++SG ++HG+  +AL +   M  +G
Sbjct: 210 VVACCARLGLVDDALELAARMSRSGPEPNVATWNTVLSGCSRHGRDREALGVVASMLKQG 269

Query: 269 MKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY--TCMVDLLGRAGKL 325
           ++PD+ T  +LL +  + GL+  G++     + +     +PD Y  T +VD+  + G+L
Sbjct: 270 LRPDATTVSSLLKSVANTGLLRHGMEIHCFFLRN---QLEPDVYTGTALVDMYAKCGRL 325



 Score = 47.0 bits (110), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 54/217 (24%), Positives = 95/217 (43%), Gaps = 27/217 (12%)

Query: 167 GIRP-NASSLSSVLLGCS--------HLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMY 217
           G+ P +A  L S+L  C+        H  + +L  Q+H L  ++ L +D      L+ + 
Sbjct: 38  GVPPYSAGVLVSLLRDCADLHGDDTDHRVARRLAPQLHSLAVRTGLSRDPRVTCALVDLL 97

Query: 218 CKCGDLEDACKLFLEIQR---KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGM---KP 271
            + G      +L  E      KD V WN  ++  A+  + ++A+ +F +M+  G+   + 
Sbjct: 98  ARLGRGPSCARLLHEAAEDGAKDAVLWNKHVAMLAEAEEWDEAIAVFREMQARGVPRRRG 157

Query: 272 DSITFVALLLACNHAGLVD--LGIQYFD-------SMVNDYGIAAKPDHYTCMVDLLGRA 322
            ++   AL LA +   LV   L   Y +       + V D   A     +  +V    R 
Sbjct: 158 RAVHAYALKLALDAHPLVPGFLAGMYAENADVAAATRVLDAMGAGSVVPWNAVVACCARL 217

Query: 323 GKLVEAVDLIKKMPFK-PQP--AIFGTLLSACRVHKR 356
           G + +A++L  +M    P+P  A + T+LS C  H R
Sbjct: 218 GLVDDALELAARMSRSGPEPNVATWNTVLSGCSRHGR 254


>gi|449446125|ref|XP_004140822.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 809

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 219/591 (37%), Positives = 322/591 (54%), Gaps = 74/591 (12%)

Query: 2   NVKTTVNWNSVLAGFAK------------------------------QRGKLKDAQELFD 31
           +V  +V+WNS+LAG+ +                               RG + +A +LFD
Sbjct: 140 SVLDSVSWNSILAGYIEIGNVEEAKHIYHQMPERSIIASNSMIVLFGMRGLVVEACKLFD 199

Query: 32  KIPQPDVVSYNIMLSCILLNS-------------------DDVVAAF------------- 59
           ++ + D+V+++ +++C   N                    D+VVA               
Sbjct: 200 EMLEKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSALSACANLLVVNM 259

Query: 60  -DFFQRLPIK-DTASW----NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE 113
                 L +K  T S+    N +I  + +  ++  AR LF      + +SW++MISGY++
Sbjct: 260 GKLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVARKLFDEAYLLDLISWNSMISGYLK 319

Query: 114 CGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNAS 173
           C  +D A  +F   P K VV+W++MISGY      +N   ++ L L + M   G +P+ +
Sbjct: 320 CNLVDNAKAIFDSMPEKDVVSWSSMISGY-----AQNDLFDETLALFQEMQMSGFKPDET 374

Query: 174 SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI 233
           +L SV+  C+ L++L+ GK VH  + ++ L  +    T LI MY KCG +E A ++F  +
Sbjct: 375 TLVSVISACARLAALEQGKWVHAYIKRNGLTINVILGTTLIDMYMKCGCVETALEVFYGM 434

Query: 234 QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGI 293
             K + TWNA+I G A +G  E +L +F  MK   + P+ ITF+ +L AC H GLVD G 
Sbjct: 435 IEKGISTWNALILGLAMNGLVESSLDMFSNMKKCHVTPNEITFMGVLGACRHMGLVDEGQ 494

Query: 294 QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRV 353
            +F SM++D+ I     HY CMVDLLGRAGKL EA +L+ +MP  P  A +G LL AC+ 
Sbjct: 495 HHFYSMIHDHKIQPNVKHYGCMVDLLGRAGKLQEAEELLNRMPMTPDVATWGALLGACKK 554

Query: 354 HKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGY 413
           H   ++       L  L P +  G +V L+NIYA+  KWDDV  IR  M ++ V+K+PG 
Sbjct: 555 HGDSEMGRRVGRKLIELQP-DHDGFHVLLSNIYASKGKWDDVLEIRGMMTKHRVLKIPGC 613

Query: 414 SWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQL 473
           S IE   V+HEF +GD+ HP++ +I + L E+  ++KL GY PD+   L  V EE KE  
Sbjct: 614 SMIEANGVIHEFLAGDKTHPDMDAIEDMLVEMAMKLKLEGYTPDINEVLLDVDEEEKEST 673

Query: 474 LLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREII 524
           L  HSEKLAIAFGLI +   TPIR+ KNLR+C DCH A K IS    R+I+
Sbjct: 674 LFRHSEKLAIAFGLINISPPTPIRIMKNLRICNDCHTAAKLISKAFCRKIV 724



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 85/330 (25%), Positives = 160/330 (48%), Gaps = 38/330 (11%)

Query: 37  DVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM 96
           DV   N +++C  + S+ +  A   F    + D+ SWN++++G+++  N+ +A+ ++  M
Sbjct: 112 DVYVRNTLINCFSVCSN-MTDACRVFNESSVLDSVSWNSILAGYIEIGNVEEAKHIYHQM 170

Query: 97  PEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDG 156
           PE++ ++ ++MI  +   G + +A +LF     K +V W+A+I+ +      +N   E+ 
Sbjct: 171 PERSIIASNSMIVLFGMRGLVVEACKLFDEMLEKDMVTWSALIACFQ-----QNEMYEEA 225

Query: 157 LKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISM 216
           ++    M  +G+  +     S L  C++L  + +GK +H L  K            LI M
Sbjct: 226 IRTFVGMHKIGVMVDEVVAVSALSACANLLVVNMGKLIHSLSLKIGTESYINLQNALIYM 285

Query: 217 YCKCGDLEDACKLFLE-------------------------------IQRKDVVTWNAMI 245
           Y KCGD+  A KLF E                               +  KDVV+W++MI
Sbjct: 286 YSKCGDIMVARKLFDEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMI 345

Query: 246 SGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGI 305
           SGYAQ+   ++ L LF +M+  G KPD  T V+++ AC     ++ G ++  + +   G+
Sbjct: 346 SGYAQNDLFDETLALFQEMQMSGFKPDETTLVSVISACARLAALEQG-KWVHAYIKRNGL 404

Query: 306 AAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335
                  T ++D+  + G +  A+++   M
Sbjct: 405 TINVILGTTLIDMYMKCGCVETALEVFYGM 434



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/185 (23%), Positives = 80/185 (43%), Gaps = 9/185 (4%)

Query: 116 QLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSL 175
            +D    +F      +   W  MI  Y     ++ +       L + M+   +  +  + 
Sbjct: 27  HIDYTRRIFNFIENTNCFMWNMMIRAY-----IQTNSPHFAFTLYKSMLSNYLGADNYTY 81

Query: 176 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR 235
             ++  CS   S    KQVH  V K     D      LI+ +  C ++ DAC++F E   
Sbjct: 82  PLLIQACSIRRSEWEAKQVHNHVLKLGFDSDVYVRNTLINCFSVCSNMTDACRVFNESSV 141

Query: 236 KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQY 295
            D V+WN++++GY + G  E+A  ++ +M +  +    I   ++++     GLV    + 
Sbjct: 142 LDSVSWNSILAGYIEIGNVEEAKHIYHQMPERSI----IASNSMIVLFGMRGLVVEACKL 197

Query: 296 FDSMV 300
           FD M+
Sbjct: 198 FDEML 202


>gi|302814190|ref|XP_002988779.1| hypothetical protein SELMODRAFT_128847 [Selaginella moellendorffii]
 gi|300143350|gb|EFJ10041.1| hypothetical protein SELMODRAFT_128847 [Selaginella moellendorffii]
          Length = 796

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 207/545 (37%), Positives = 311/545 (57%), Gaps = 17/545 (3%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
           N++L  +A+ +  L DA ++F ++P+ DVVS++ M++     +D    A +F+ ++ ++ 
Sbjct: 260 NALLTMYARCKC-LDDAAKIFQRLPRRDVVSWSAMIAA-FAETDLFDEAIEFYSKMQLEG 317

Query: 70  T-ASWNTMISGFVQKKNMAKAR------DLFLAMPEKNS-VSWSAMISGYIECGQLDKAV 121
              ++ T  S  +   ++   R      D  L    K + V+ +A++  Y   G LD+A 
Sbjct: 318 VRPNYYTFASVLLACASVGDLRAGRAVHDQILGNGYKITLVNGTALVDLYTSYGSLDEAR 377

Query: 122 ELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSL-SSVLL 180
            LF     +    WT +I GY K G+         L+L R M      P    + S V+ 
Sbjct: 378 SLFDQIENRDEGLWTVLIGGYSKQGHRTGV-----LELYREMKNTTKVPATKIIYSCVIS 432

Query: 181 GCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVT 240
            C+ L +    +Q H  +    +  D    T L++MY + G+LE A ++F ++  +D + 
Sbjct: 433 ACASLGAFADARQAHSDIEADGMISDFVLATSLVNMYSRWGNLESARQVFDKMSSRDTLA 492

Query: 241 WNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV 300
           W  +I+GYA+HG+   AL L+ +M+ EG +P  +TF+ +L AC+HAGL + G Q F S+ 
Sbjct: 493 WTTLIAGYAKHGEHGLALGLYKEMELEGAEPSELTFMVVLYACSHAGLQEQGKQLFISIQ 552

Query: 301 NDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLA 360
           +DY +     HY+C++DLL RAG+L +A +LI  MP +P    + +LL A R+HK +  A
Sbjct: 553 SDYAMHPNIAHYSCIIDLLSRAGRLSDAEELINAMPVEPNDVTWSSLLGASRIHKDVKRA 612

Query: 361 EFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGT 420
             AA  +  L+P + A  YV L+N++A       +A +R +M    V K  G SWIEV  
Sbjct: 613 THAAGQITKLDPVDPAS-YVLLSNVHAVTGNLAGMASVRNTMVARGVKKRRGSSWIEVAD 671

Query: 421 VVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEK 480
            +HEF  GD  HP    I  +L+ L  ++K AGYVP+ E  LH VGE+ KE LL  HSEK
Sbjct: 672 QIHEFNVGDNSHPRFQEIFAELQRLSPKIKEAGYVPESEEVLHDVGEKEKELLLRLHSEK 731

Query: 481 LAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCS 540
           LAIAFGLI    GT +R+F  LR+C DCH A K+ISAI +REIIVRD++RFH F+DG CS
Sbjct: 732 LAIAFGLIATAPGTTLRIFNTLRICHDCHSAVKFISAIARREIIVRDSSRFHKFRDGQCS 791

Query: 541 CGDYW 545
           CGDYW
Sbjct: 792 CGDYW 796



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 96/344 (27%), Positives = 174/344 (50%), Gaps = 30/344 (8%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
           N ++  + K  G +  A+  FD I + +  S+  ML+    N     AA D ++R+ ++ 
Sbjct: 62  NEIVRAYGKC-GSVASARVAFDAIARKNDYSWGSMLTAYAQNGH-YRAALDLYKRMDLQP 119

Query: 70  T-----------ASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLD 118
                       AS   +  G      ++  + L L +  +NS     +++ Y +CG L+
Sbjct: 120 NPVVYTTVLGACASIEALEEGKAIHSRISGTKGLKLDVILENS-----LLTMYAKCGSLE 174

Query: 119 KAVELF-KVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSS 177
            A  LF +++  +SV +W AMI+ Y + G+ E +        +R+   + + P+  + +S
Sbjct: 175 DAKRLFERMSGRRSVSSWNAMIAAYAQSGHFEEA--------IRLYEDMDVEPSVRTFTS 226

Query: 178 VLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKD 237
           VL  CS+L  L  G+++H L+       D +    L++MY +C  L+DA K+F  + R+D
Sbjct: 227 VLSACSNLGLLDQGRKIHALISSRGTELDLSLQNALLTMYARCKCLDDAAKIFQRLPRRD 286

Query: 238 VVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFD 297
           VV+W+AMI+ +A+    ++A+  + KM+ EG++P+  TF ++LLAC   G +  G    D
Sbjct: 287 VVSWSAMIAAFAETDLFDEAIEFYSKMQLEGVRPNYYTFASVLLACASVGDLRAGRAVHD 346

Query: 298 SMV-NDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQ 340
            ++ N Y I     + T +VDL    G L EA  L  ++  + +
Sbjct: 347 QILGNGYKITLV--NGTALVDLYTSYGSLDEARSLFDQIENRDE 388


>gi|302762388|ref|XP_002964616.1| hypothetical protein SELMODRAFT_82072 [Selaginella moellendorffii]
 gi|300168345|gb|EFJ34949.1| hypothetical protein SELMODRAFT_82072 [Selaginella moellendorffii]
          Length = 795

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 207/545 (37%), Positives = 311/545 (57%), Gaps = 17/545 (3%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
           N++L  +A+ +  L DA ++F ++P+ DVVS++ M++     +D    A +F+ ++ ++ 
Sbjct: 259 NALLTMYARCKC-LDDAAKIFQRLPRRDVVSWSAMIAA-FAETDLFDEAIEFYSKMQLEG 316

Query: 70  T-ASWNTMISGFVQKKNMAKAR------DLFLAMPEKNS-VSWSAMISGYIECGQLDKAV 121
              ++ T  S  +   ++   R      D  L    K + V+ +A++  Y   G LD+A 
Sbjct: 317 VRPNYYTFASVLLACASVGDLRAGRAVHDQILGNGYKITLVNGTALVDLYTSYGSLDEAR 376

Query: 122 ELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSL-SSVLL 180
            LF     +    WT +I GY K G+         L+L R M      P    + S V+ 
Sbjct: 377 SLFDQIENRDEGLWTVLIGGYSKQGHRTGV-----LELYREMKNTTKVPATKIIYSCVIS 431

Query: 181 GCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVT 240
            C+ L +    +Q H  +    +  D    T L++MY + G+LE A ++F ++  +D + 
Sbjct: 432 ACASLGAFADARQAHSDIEADGMISDFVLATSLVNMYSRWGNLESARQVFDKMSSRDTLA 491

Query: 241 WNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV 300
           W  +I+GYA+HG+   AL L+ +M+ EG +P  +TF+ +L AC+HAGL + G Q F S+ 
Sbjct: 492 WTTLIAGYAKHGEHGLALGLYKEMELEGAEPSELTFMVVLYACSHAGLQEQGKQLFISIQ 551

Query: 301 NDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLA 360
           +DY +     HY+C++DLL RAG+L +A +LI  MP +P    + +LL A R+HK +  A
Sbjct: 552 SDYAMHPNIAHYSCIIDLLSRAGRLSDAEELINAMPVEPNDVTWSSLLGASRIHKDVKRA 611

Query: 361 EFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGT 420
             AA  +  L+P + A  YV L+N++A       +A +R +M    V K  G SWIEV  
Sbjct: 612 THAAGQITKLDPVDPAS-YVLLSNVHAVTGNLAGMASVRNTMVARGVKKRRGSSWIEVAD 670

Query: 421 VVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEK 480
            +HEF  GD  HP    I  +L+ L  ++K AGYVP+ E  LH VGE+ KE LL  HSEK
Sbjct: 671 QIHEFNVGDNSHPRFQEIFAELQRLSPKIKEAGYVPESEEVLHDVGEKEKELLLRLHSEK 730

Query: 481 LAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCS 540
           LAIAFGLI    GT +R+F  LR+C DCH A K+ISAI +REIIVRD++RFH F+DG CS
Sbjct: 731 LAIAFGLIATAPGTTLRIFNTLRICHDCHSAVKFISAIARREIIVRDSSRFHKFRDGQCS 790

Query: 541 CGDYW 545
           CGDYW
Sbjct: 791 CGDYW 795



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 91/338 (26%), Positives = 173/338 (51%), Gaps = 19/338 (5%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK- 68
           N ++  + K  G +  A+  FD I + +  S+  ML+    N     AA D ++R+ ++ 
Sbjct: 62  NEIVRAYGKC-GSVASARAAFDAIARKNDYSWGSMLTAYAQNGH-YRAALDLYKRMDLQP 119

Query: 69  DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSW-----SAMISGYIECGQLDKAVEL 123
           +   + T++      K + + + +   +     +       +++++ Y +CG L+ A  L
Sbjct: 120 NPVVYTTVLGACASIKALEEGKAIHSRISGTKGLKLDVILENSLLTMYAKCGSLEDAKRL 179

Query: 124 FKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCS 183
           F+    +SV +W AMI+ Y + G+ E +        +R+   + + P+  + +SVL  CS
Sbjct: 180 FERMSGRSVSSWNAMIAAYAQSGHFEEA--------IRLYEDMDVEPSVRTFTSVLSACS 231

Query: 184 HLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNA 243
           +L  L  G+++H L+       D +    L++MY +C  L+DA K+F  + R+DVV+W+A
Sbjct: 232 NLGLLDQGRKIHALISSRGTELDLSLQNALLTMYARCKCLDDAAKIFQRLPRRDVVSWSA 291

Query: 244 MISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV-ND 302
           MI+ +A+    ++A+  + KM+ EG++P+  TF ++LLAC   G +  G    D ++ N 
Sbjct: 292 MIAAFAETDLFDEAIEFYSKMQLEGVRPNYYTFASVLLACASVGDLRAGRAVHDQILGNG 351

Query: 303 YGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQ 340
           Y I     + T +VDL    G L EA  L  ++  + +
Sbjct: 352 YKITLV--NGTALVDLYTSYGSLDEARSLFDQIENRDE 387


>gi|224104375|ref|XP_002313416.1| predicted protein [Populus trichocarpa]
 gi|222849824|gb|EEE87371.1| predicted protein [Populus trichocarpa]
          Length = 650

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 203/536 (37%), Positives = 322/536 (60%), Gaps = 19/536 (3%)

Query: 23  LKDAQELFDKIPQPDVVSYNIMLSCILL--NSDDVVAAFDFFQRLPI-KDTASWNTMISG 79
           + +A+++FDK     +  YN +   + L  + ++V+  +     + I  D  ++  ++  
Sbjct: 121 IDNARKVFDKTRNRTIYVYNALFRALSLAGHGEEVLNMYRRMNSIGIPSDRFTYTYVLKA 180

Query: 80  FVQKKN----MAKARDLFLAMPEKNSVSW----SAMISGYIECGQLDKAVELFKVAPVKS 131
            V  +     + K R++   +       +    + ++  Y + G +  A  +F   PVK+
Sbjct: 181 CVASECFVSLLNKGREIHAHILRHGYDGYVHIMTTLVDMYAKFGCVSNASCVFNQMPVKN 240

Query: 132 VVAWTAMISGYMKFGYVENSWAEDGLKLLR--MMIGLGIRPNASSLSSVLLGCSHLSSLQ 189
           VV+W+AMI+ Y K     N  A + L+L R  M+    + PN+ ++ SVL  C+ L++L+
Sbjct: 241 VVSWSAMIACYAK-----NGKAFEALELFRELMLETQDLCPNSVTMVSVLQACAALAALE 295

Query: 190 LGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYA 249
            G+ +H  + +  L      ++ L++MY +CG LE   ++F ++ ++DVV+WN++IS Y 
Sbjct: 296 QGRLIHGYILRKGLDSILPVISALVTMYARCGKLELGQRVFDQMDKRDVVSWNSLISSYG 355

Query: 250 QHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKP 309
            HG G+KA+ +F++M   G++P  I+FV++L AC+HAGLVD G   F+SM   +GI    
Sbjct: 356 VHGFGKKAIGIFEEMTYNGVEPSPISFVSVLGACSHAGLVDEGKMLFNSMHVAHGICPSV 415

Query: 310 DHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFN 369
           +HY CMVDLLGRA +L EA  +I+ M  +P P ++G+LL +CR+H  ++LAE A++ LF+
Sbjct: 416 EHYACMVDLLGRANRLEEAAKIIENMRIEPGPKVWGSLLGSCRIHCNVELAERASIRLFD 475

Query: 370 LNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGD 429
           L P N AG YV LA+IYA    WD V R++  ++   + K+PG SWIEV   ++ F S D
Sbjct: 476 LEPTN-AGNYVLLADIYAEAGMWDGVKRVKKLLEARGLQKVPGRSWIEVKRKIYSFVSVD 534

Query: 430 RVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIK 489
            V+P +  +H  L +L   +K  GYVP  +  L+ +    KE+++L HSEKLA+AFGLI 
Sbjct: 535 EVNPRMEQLHALLVKLSMELKEEGYVPQTKVVLYDLKAAEKERIVLGHSEKLAVAFGLIN 594

Query: 490 VPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
              G  IR+ K+LR+C DCH  TK+IS    +EI+VRD  RFHHF+DG CSCGDYW
Sbjct: 595 SSKGEVIRITKSLRLCEDCHSFTKFISKFANKEILVRDVNRFHHFRDGVCSCGDYW 650



 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 90/392 (22%), Positives = 163/392 (41%), Gaps = 85/392 (21%)

Query: 5   TTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIM-LSCILLNSDDVVAAFDFFQ 63
           +T + N ++    KQ G L  A EL    P P   +Y ++ LSC   NS           
Sbjct: 38  STADNNKLIQSLCKQ-GNLTQALELLSLEPNPAQHTYELLILSCTHQNS----------- 85

Query: 64  RLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVEL 123
            L        + + +GF Q        D FLA         + +I+ Y     +D A ++
Sbjct: 86  -LLDAQRVHRHLLENGFDQ--------DPFLA---------TKLINMYSFFDSIDNARKV 127

Query: 124 FKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGC- 182
           F     +++  + A+       G+      E+ L + R M  +GI  +  + + VL  C 
Sbjct: 128 FDKTRNRTIYVYNALFRALSLAGH-----GEEVLNMYRRMNSIGIPSDRFTYTYVLKACV 182

Query: 183 ---SHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVV 239
                +S L  G+++H  + +         +T L+ MY K G + +A  +F ++  K+VV
Sbjct: 183 ASECFVSLLNKGREIHAHILRHGYDGYVHIMTTLVDMYAKFGCVSNASCVFNQMPVKNVV 242

Query: 240 TWNAMISGYAQHGKGEKALRLFDK--MKDEGMKPDSITFV-------------------- 277
           +W+AMI+ YA++GK  +AL LF +  ++ + + P+S+T V                    
Sbjct: 243 SWSAMIACYAKNGKAFEALELFRELMLETQDLCPNSVTMVSVLQACAALAALEQGRLIHG 302

Query: 278 ---------------ALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRA 322
                          AL+      G ++LG + FD M     ++     +  ++   G  
Sbjct: 303 YILRKGLDSILPVISALVTMYARCGKLELGQRVFDQMDKRDVVS-----WNSLISSYGVH 357

Query: 323 GKLVEAVDLIKKMPF---KPQPAIFGTLLSAC 351
           G   +A+ + ++M +   +P P  F ++L AC
Sbjct: 358 GFGKKAIGIFEEMTYNGVEPSPISFVSVLGAC 389



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 62/272 (22%), Positives = 113/272 (41%), Gaps = 42/272 (15%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDV----V 56
           M VK  V+W++++A +AK  GK  +A ELF +               ++L + D+    V
Sbjct: 236 MPVKNVVSWSAMIACYAKN-GKAFEALELFRE---------------LMLETQDLCPNSV 279

Query: 57  AAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQ 116
                 Q            +I G++ +K +    D  L +        SA+++ Y  CG+
Sbjct: 280 TMVSVLQACAALAALEQGRLIHGYILRKGL----DSILPV-------ISALVTMYARCGK 328

Query: 117 LDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLS 176
           L+    +F     + VV+W ++IS Y   G+      +  + +   M   G+ P+  S  
Sbjct: 329 LELGQRVFDQMDKRDVVSWNSLISSYGVHGF-----GKKAIGIFEEMTYNGVEPSPISFV 383

Query: 177 SVLLGCSHLSSLQLGKQV-HQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ- 234
           SVL  CSH   +  GK + + +     +C        ++ +  +   LE+A K+   ++ 
Sbjct: 384 SVLGACSHAGLVDEGKMLFNSMHVAHGICPSVEHYACMVDLLGRANRLEEAAKIIENMRI 443

Query: 235 RKDVVTWNAMISGYAQHGKGEKA----LRLFD 262
                 W +++     H   E A    +RLFD
Sbjct: 444 EPGPKVWGSLLGSCRIHCNVELAERASIRLFD 475


>gi|297829702|ref|XP_002882733.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328573|gb|EFH58992.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 620

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 212/536 (39%), Positives = 305/536 (56%), Gaps = 25/536 (4%)

Query: 21  GKLKDAQELFDKIPQPDV--VSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMIS 78
           G ++DA+++F++ P      V YN ++S    NS    AAF  F+R+     +  +  I 
Sbjct: 99  GLVEDARKVFEENPHSSQLGVCYNALISGYTANSKVSDAAF-MFRRMKETGVSVDSVTIL 157

Query: 79  GFVQKKNMAK----ARDLFLAMPEKNSVS----WSAMISGYIECGQLDKAVELFKVAPVK 130
           G V    + +     R L     +  + S     ++ I+ Y++CG ++    LF   PVK
Sbjct: 158 GLVPLCTVPEYLWLGRSLHGECVKGGTYSEVAVLNSFITMYMKCGSVESGRRLFDEMPVK 217

Query: 131 SVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQL 190
            ++ W A+ISGY      +N  A D L+L   M   G+ P+  +L SVL  C+HL + ++
Sbjct: 218 GLITWNAVISGYS-----QNGLAYDVLELFEQMKSSGVCPDPFTLVSVLSSCAHLGAKKI 272

Query: 191 GKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQ 250
           G++V +LV  +    +      LISMY +CG+L  A  +F  +  K +V+W AMI  Y  
Sbjct: 273 GQEVGELVEANGFAPNVFLSNALISMYARCGNLAKARAVFDIMPVKSLVSWTAMIGCYGM 332

Query: 251 HGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPD 310
           HG GE  L LFD M   G++PD   FV +L AC+H+GL D G++ F +M  +Y +   P+
Sbjct: 333 HGMGETGLTLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLELFRAMKREYKLEPGPE 392

Query: 311 HYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNL 370
           HY+C+VDLLGRAG+L EA++ I  MP +P  A++G LL AC++HK +D+AE A   +   
Sbjct: 393 HYSCLVDLLGRAGRLDEAMEFIDSMPVEPDGAVWGALLGACKIHKNVDMAELAFAKVIEF 452

Query: 371 NPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDR 430
            P N  G YV ++NIY+  K  + + RIR+ M+E    K PGYS++E    VH F +GDR
Sbjct: 453 EPMN-IGYYVLMSNIYSDSKNQEGIWRIRVMMRERAFRKKPGYSYVEHKGKVHLFLAGDR 511

Query: 431 VHPELVSIHEKLKELEKR-MKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIK 489
            H +   +H  L ELE   M+LAG + D +      GEEV       HSE+LAIAFG++ 
Sbjct: 512 SHEQTEEVHRMLDELETSVMELAGNM-DCD-----RGEEVSSTTRE-HSERLAIAFGILN 564

Query: 490 VPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
              GT I V KNLRVC DCH   K +S I  R  +VRD +RFH+FKDG CSC DYW
Sbjct: 565 SIPGTEILVIKNLRVCEDCHVFIKLVSKIVDRRFVVRDASRFHYFKDGVCSCKDYW 620



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 59/186 (31%), Positives = 89/186 (47%), Gaps = 3/186 (1%)

Query: 155 DGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLI 214
           + + L R M+  G  P+A S   +L  C+ LS    G+Q+H  V +     +   LT LI
Sbjct: 33  ESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHVIRGGCEAEPFVLTALI 92

Query: 215 SMYCKCGDLEDACKLFLEIQRKDV--VTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPD 272
           SMYCKCG +EDA K+F E        V +NA+ISGY  + K   A  +F +MK+ G+  D
Sbjct: 93  SMYCKCGLVEDARKVFEENPHSSQLGVCYNALISGYTANSKVSDAAFMFRRMKETGVSVD 152

Query: 273 SITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLI 332
           S+T + L+  C     + LG       V   G  ++       + +  + G +     L 
Sbjct: 153 SVTILGLVPLCTVPEYLWLGRSLHGECVKG-GTYSEVAVLNSFITMYMKCGSVESGRRLF 211

Query: 333 KKMPFK 338
            +MP K
Sbjct: 212 DEMPVK 217



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 78/325 (24%), Positives = 130/325 (40%), Gaps = 58/325 (17%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQ----PDVVSY-NIMLSCILLNSD-- 53
           M VK  + WN+V++G++ Q G   D  ELF+++      PD  +  +++ SC  L +   
Sbjct: 214 MPVKGLITWNAVISGYS-QNGLAYDVLELFEQMKSSGVCPDPFTLVSVLSSCAHLGAKKI 272

Query: 54  -----DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMI 108
                ++V A  F   + +      N +IS + +  N+AKAR +F  MP K+ VSW+AMI
Sbjct: 273 GQEVGELVEANGFAPNVFLS-----NALISMYARCGNLAKARAVFDIMPVKSLVSWTAMI 327

Query: 109 SGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGI 168
             Y                             G    G       E GL L   MI  GI
Sbjct: 328 GCY-----------------------------GMHGMG-------ETGLTLFDDMIKRGI 351

Query: 169 RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKS-PLCKDTTALTPLISMYCKCGDLEDAC 227
           RP+ +    VL  CSH      G ++ + + +   L       + L+ +  + G L++A 
Sbjct: 352 RPDGAVFVMVLSACSHSGLTDKGLELFRAMKREYKLEPGPEHYSCLVDLLGRAGRLDEAM 411

Query: 228 KLFLEIQ-RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHA 286
           +    +    D   W A++     H   + A   F K+ +   +P +I +  L+      
Sbjct: 412 EFIDSMPVEPDGAVWGALLGACKIHKNVDMAELAFAKVIE--FEPMNIGYYVLMSNIYSD 469

Query: 287 GLVDLGIQYFDSMVNDYGIAAKPDH 311
                GI     M+ +     KP +
Sbjct: 470 SKNQEGIWRIRVMMRERAFRKKPGY 494


>gi|449448586|ref|XP_004142047.1| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Cucumis sativus]
          Length = 1037

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 202/527 (38%), Positives = 296/527 (56%), Gaps = 45/527 (8%)

Query: 58   AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK------------------ 99
            A    +RLP  D  SW  MI+G+VQ    ++A  LF  M  +                  
Sbjct: 517  ALRILRRLPEDDVVSWTAMIAGYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAG 576

Query: 100  ----------NSVSWSA-----------MISGYIECGQLDKAVELFKVAPVKSVVAWTAM 138
                      ++ S++A           +IS Y  CG++ +A   F+    K+ ++W ++
Sbjct: 577  IRALRQGQQIHAQSYAAGFGADLSINNALISLYARCGRIQEAYLAFEKIGDKNNISWNSL 636

Query: 139  ISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLV 198
            +SG  + GY E     + L++   M+      N  +  S +   + L++++ G+Q+H +V
Sbjct: 637  VSGLAQSGYFE-----EALQVFVRMLRTEAEVNMFTYGSAISAAASLANIKQGQQIHSMV 691

Query: 199  FKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKAL 258
             K+    +      LIS+Y K G + DA + F ++  ++V++WNAMI+GY+QHG G +AL
Sbjct: 692  LKTGYDSEREVSNSLISLYAKSGSISDAWREFNDMSERNVISWNAMITGYSQHGCGMEAL 751

Query: 259  RLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDL 318
            RLF++MK  G+ P+ +TFV +L AC+H GLV  G+ YF+SM   + +  K +HY C+VDL
Sbjct: 752  RLFEEMKVCGIMPNHVTFVGVLSACSHIGLVKEGLDYFESMFKIHDLVPKSEHYVCVVDL 811

Query: 319  LGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGC 378
            LGRAG+L  A++ IK+MP      I+ TLLSAC +HK +++ E AA +L  L P ++A  
Sbjct: 812  LGRAGQLDRAMEYIKEMPIPADAMIWRTLLSACVIHKNIEIGERAAHHLLELEPEDSA-T 870

Query: 379  YVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSI 438
            YV ++NIYA  ++W      R  MK+  V K PG SWIEV   VH F +GD++HP    I
Sbjct: 871  YVLISNIYAVSRQWIHRDWSRKLMKDRGVKKEPGRSWIEVKNAVHAFYAGDKLHPLTNQI 930

Query: 439  HEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRV 498
            +E +  L +R    GYV D    L+   +  K+ +   HSEKLAIAFGL+ +    PIRV
Sbjct: 931  YEYIGHLNRRTSEIGYVQDSFSLLNESEQGQKDPITHVHSEKLAIAFGLLSLGNNIPIRV 990

Query: 499  FKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
             KNLRVC DCH   KY+S I  R IIVRD  RFHHF  G CSC D+W
Sbjct: 991  MKNLRVCNDCHNWIKYVSKISNRSIIVRDAHRFHHFDGGVCSCKDFW 1037



 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 93/334 (27%), Positives = 161/334 (48%), Gaps = 16/334 (4%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLN--SDDVVAAFDFFQRLPI 67
           N ++A +++ R KL  A+ +F  +   D VSYN ++S ++    SD  +  F   QR  +
Sbjct: 300 NGLVALYSRSR-KLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCL 358

Query: 68  K-DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISG-----YIECGQLDKAV 121
           K D  +  +++S       + K   L  +   K  +S   ++ G     Y +C  ++ A 
Sbjct: 359 KPDCITVASLLSACASVGALHKGMQLH-SHAIKAGMSADIILEGSLLDLYSKCADVETAH 417

Query: 122 ELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLG 181
           + F     +++V W  M+  Y   G ++N    D  ++ R M   G+ PN  +  S+L  
Sbjct: 418 KFFLTTETENIVLWNVMLVAY---GQLDN--LSDSFEIFRQMQMEGMIPNQFTYPSILRT 472

Query: 182 CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTW 241
           C+ L +L LG+Q+H  V K+    +    + LI MY K G L  A ++   +   DVV+W
Sbjct: 473 CTSLGALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSW 532

Query: 242 NAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN 301
            AMI+GY QH    +AL+LF++M+  G++ D+I F + + AC     +  G Q   +   
Sbjct: 533 TAMIAGYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQG-QQIHAQSY 591

Query: 302 DYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335
             G  A       ++ L  R G++ EA    +K+
Sbjct: 592 AAGFGADLSINNALISLYARCGRIQEAYLAFEKI 625



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 82/344 (23%), Positives = 161/344 (46%), Gaps = 51/344 (14%)

Query: 3   VKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFF 62
           +K  V W ++++G + Q G  ++A  LF  +   ++     +LS +L  S  +   F+  
Sbjct: 223 MKDIVTWVAMISGLS-QNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKI-QLFELG 280

Query: 63  QRLPI--------KDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIEC 114
           ++L           +T   N +++ + + + +  A  +F  M  ++ VS++++ISG ++ 
Sbjct: 281 EQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQ 340

Query: 115 GQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASS 174
           G  D+A+ELF           T M                D LK           P+  +
Sbjct: 341 GFSDRALELF-----------TKM--------------QRDCLK-----------PDCIT 364

Query: 175 LSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ 234
           ++S+L  C+ + +L  G Q+H    K+ +  D      L+ +Y KC D+E A K FL  +
Sbjct: 365 VASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFLTTE 424

Query: 235 RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ 294
            +++V WN M+  Y Q      +  +F +M+ EGM P+  T+ ++L  C   G + LG Q
Sbjct: 425 TENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQ 484

Query: 295 YFDSMVNDYGIAAKPDHYTC--MVDLLGRAGKLVEAVDLIKKMP 336
               ++       + + Y C  ++D+  + G+L  A+ +++++P
Sbjct: 485 IHTHVIK---TGFQLNVYVCSVLIDMYAKYGQLALALRILRRLP 525



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 77/286 (26%), Positives = 132/286 (46%), Gaps = 17/286 (5%)

Query: 19  QRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMIS 78
           + G    A ++FD+     V S+N M+   +    +    F  F+R+  +         +
Sbjct: 105 RHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNF-QVFCLFRRMLAEGITPNGYTFA 163

Query: 79  GFVQK----------KNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAP 128
           G ++                +R  +        V+ + +I  Y + G ++ A ++F    
Sbjct: 164 GVLKACVGGDIAFNYVKQVHSRTFYYGFDSSPLVA-NLLIDLYSKNGYIESAKKVFNCIC 222

Query: 129 VKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSL 188
           +K +V W AMISG       +N   E+ + L   M    I P    LSSVL   + +   
Sbjct: 223 MKDIVTWVAMISGLS-----QNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLF 277

Query: 189 QLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGY 248
           +LG+Q+H LV K     +T     L+++Y +   L  A ++F  +  +D V++N++ISG 
Sbjct: 278 ELGEQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGL 337

Query: 249 AQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ 294
            Q G  ++AL LF KM+ + +KPD IT  +LL AC   G +  G+Q
Sbjct: 338 VQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQ 383



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 71/233 (30%), Positives = 103/233 (44%), Gaps = 11/233 (4%)

Query: 106 AMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIG 165
           +++  Y   G    AV++F     +SV +W  MI  +     V          L R M+ 
Sbjct: 98  SLVDNYFRHGDQHGAVKVFDENSNRSVFSWNKMIHVF-----VAQKSNFQVFCLFRRMLA 152

Query: 166 LGIRPNASSLSSVLLGCSHLS-SLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 224
            GI PN  + + VL  C     +    KQVH   F             LI +Y K G +E
Sbjct: 153 EGITPNGYTFAGVLKACVGGDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIE 212

Query: 225 DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 284
            A K+F  I  KD+VTW AMISG +Q+G  E+A+ LF  M    + P      ++L A  
Sbjct: 213 SAKKVFNCICMKDIVTWVAMISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSAST 272

Query: 285 HAGLVDLGIQYFDSMVNDYGIAAKPDHYTC--MVDLLGRAGKLVEAVDLIKKM 335
              L +LG Q    +V  +G  ++   Y C  +V L  R+ KL+ A  +   M
Sbjct: 273 KIQLFELGEQ-LHCLVIKWGFHSET--YVCNGLVALYSRSRKLISAERIFSTM 322



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 75/172 (43%)

Query: 157 LKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISM 216
           ++L+  M   G+R N  +   +L GC    SL    ++H  + KS    +   +  L+  
Sbjct: 43  IQLMNFMEERGVRSNYQNYLWLLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSLVDN 102

Query: 217 YCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITF 276
           Y + GD   A K+F E   + V +WN MI  +       +   LF +M  EG+ P+  TF
Sbjct: 103 YFRHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTF 162

Query: 277 VALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEA 328
             +L AC    +    ++   S    YG  + P     ++DL  + G +  A
Sbjct: 163 AGVLKACVGGDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESA 214


>gi|115470597|ref|NP_001058897.1| Os07g0150000 [Oryza sativa Japonica Group]
 gi|34393394|dbj|BAC82905.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610433|dbj|BAF20811.1| Os07g0150000 [Oryza sativa Japonica Group]
          Length = 592

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 196/490 (40%), Positives = 294/490 (60%), Gaps = 13/490 (2%)

Query: 63  QRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSW----SAMISGYIECGQLD 118
           +RL + DT ++  +I    +   + +   L     +   V+     ++++  Y  CG  +
Sbjct: 109 RRLALPDTHTYPPLIQACARLLALREGECLHAEAAKNGFVTLVFVQNSLVHLYGACGLFE 168

Query: 119 KAVELFKVAPVK--SVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLS 176
            A ++F   PV+  ++V+W +M++ +       N    + L +   M+G+   P+  ++ 
Sbjct: 169 SAHKVFDEMPVRGRNLVSWNSMLNSF-----AANGRPNEVLTVFWEMLGVDFAPDGFTIV 223

Query: 177 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ-R 235
           SVL  C+   +L LG++VH  V K  L +++     LI +Y KCG + DA ++F E+   
Sbjct: 224 SVLTACAEFGALALGRRVHVYVEKVGLVENSHVSNALIDLYAKCGSVNDARRIFEEMGLG 283

Query: 236 KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQY 295
           + VV+W ++I G A +G G++AL LF  M+ E + P  IT V +L AC+H GLVD G +Y
Sbjct: 284 RTVVSWTSLIVGLAANGFGKEALELFSLMEREKLVPTEITMVGVLYACSHCGLVDDGFRY 343

Query: 296 FDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHK 355
           FD M  DYGI+ + +H  CMVDLLGRAG++ EA D I  MP +P   ++ TLL +C +HK
Sbjct: 344 FDRMKEDYGISPRIEHLGCMVDLLGRAGRVEEAYDYIITMPLEPNAVVWRTLLGSCAMHK 403

Query: 356 RLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSW 415
           +L+L + A   L  L+P ++ G YV L+N+YAA+  W DV  +R +M ++ V K PG+S 
Sbjct: 404 KLELGKVAWERLVELDPGHS-GDYVLLSNLYAAVGMWADVHVLRKTMVKDRVRKNPGHSL 462

Query: 416 IEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLL 475
           +E+   V+EF  GDR HPE   I+E L E+ +R++  GY+P     L  + EE KE  L 
Sbjct: 463 VELRNSVYEFVMGDRSHPESEQIYEMLAEIAERLRREGYIPRTSNVLADIEEEEKETALN 522

Query: 476 FHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFK 535
           +HSE+LAIAF L+K   G PIR+ KNLR+CGDCH A   IS +  REIIVRD +RFHHF+
Sbjct: 523 YHSERLAIAFALLKSLPGIPIRIIKNLRMCGDCHVAFNLISKVYDREIIVRDRSRFHHFQ 582

Query: 536 DGTCSCGDYW 545
            G CSC DYW
Sbjct: 583 GGACSCKDYW 592


>gi|225442928|ref|XP_002265258.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Vitis vinifera]
          Length = 703

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 208/536 (38%), Positives = 302/536 (56%), Gaps = 17/536 (3%)

Query: 19  QRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWN--TM 76
           +R  +K A  ++ ++P  DV SYNI+++ +L N      A +   R+ + +   W+  T 
Sbjct: 176 RRSDVKGAMSVWYEVPGLDVFSYNIIINGLLENGYPS-EALEVLDRM-VDECIVWDNVTY 233

Query: 77  ISGFVQKKNMAKAR-------DLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPV 129
           ++ F    ++   R        +F    E +S   SA+I  Y +CG +  A ++F     
Sbjct: 234 VTAFGLCSHLKDLRLGLQVHCRMFRTGAEYDSFVSSAIIDMYGKCGNILNARKVFNRLQT 293

Query: 130 KSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQ 189
           K+VV+WTA+++ Y      +N   E+ L     M   G+ PN  + + +L  C+ +S+L 
Sbjct: 294 KNVVSWTAILAAYS-----QNGCFEEALNFFPEMEVDGLLPNEYTFAVLLNSCAGISALG 348

Query: 190 LGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYA 249
            GK +H  + KS           LI+MY K G +E A K+FLE+  +D +TW+AMI G +
Sbjct: 349 HGKLLHTRIKKSGFEDHIIVGNALINMYSKSGSIEAAHKVFLEMICRDSITWSAMICGLS 408

Query: 250 QHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKP 309
            HG G +AL +F +M      P  +TFV +L AC H G V  G  Y + ++   GI    
Sbjct: 409 HHGLGREALVVFQEMLAAKECPHYVTFVGVLSACAHLGSVQEGFYYLNQLMKQTGIEPGV 468

Query: 310 DHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFN 369
           +HYTC+V LL +AG+L EA + +K  P K     + TLLSAC VH+   L +  A  +  
Sbjct: 469 EHYTCIVGLLCKAGRLDEAENFMKSTPVKWDVVAWRTLLSACHVHQNYGLGKKVAELVLQ 528

Query: 370 LNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGD 429
           ++P +  G Y+ L+N+YA  K+WD V +IR  M+E NV K PG SWIE+   +H F S  
Sbjct: 529 MDPGDV-GTYILLSNMYAKAKRWDGVVKIRKLMRERNVKKEPGASWIEIRNSIHVFVSEG 587

Query: 430 RVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIK 489
           + HPE   I+EK++EL   ++  GYVPD+    H V +E K + + +HSEKLAIA+GL+K
Sbjct: 588 KTHPESNQIYEKVQELLTMIRPMGYVPDIAAVFHDVEDEQKREYVSYHSEKLAIAYGLMK 647

Query: 490 VPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
            P G PIRV KNLR+C DCH A K IS +  R IIVRD  RFH F DG CSC DYW
Sbjct: 648 TPSGAPIRVIKNLRMCVDCHSAVKLISKVTNRMIIVRDANRFHCFGDGGCSCADYW 703



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 67/242 (27%), Positives = 124/242 (51%), Gaps = 11/242 (4%)

Query: 100 NSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKL 159
           N V  +++I+ Y +C Q+  A  LF     ++VV+W A+++GY   G V      + L+L
Sbjct: 61  NIVQVNSLINLYAKCDQIMVARILFDGMRKRNVVSWGALMAGYFHNGLVL-----EVLRL 115

Query: 160 LRMMIGLG-IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYC 218
            + MI +  +RPN    ++++  CS    +  G Q H    KS L         LI MY 
Sbjct: 116 FKTMISVDYMRPNEYIFATIISSCSDSGQVVEGWQCHGYALKSGLVFHQYVKNALICMYS 175

Query: 219 KCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVA 278
           +  D++ A  ++ E+   DV ++N +I+G  ++G   +AL + D+M DE +  D++T+V 
Sbjct: 176 RRSDVKGAMSVWYEVPGLDVFSYNIIINGLLENGYPSEALEVLDRMVDECIVWDNVTYVT 235

Query: 279 LLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY--TCMVDLLGRAGKLVEAVDLIKKMP 336
               C+H   + LG+Q    M   +   A+ D +  + ++D+ G+ G ++ A  +  ++ 
Sbjct: 236 AFGLCSHLKDLRLGLQVHCRM---FRTGAEYDSFVSSAIIDMYGKCGNILNARKVFNRLQ 292

Query: 337 FK 338
            K
Sbjct: 293 TK 294



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/111 (31%), Positives = 63/111 (56%), Gaps = 3/111 (2%)

Query: 187 SLQLGKQVH-QLVFKSPLCKDTTA-LTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAM 244
           +L+ GK +H  L+  +   KD    +  LI++Y KC  +  A  LF  +++++VV+W A+
Sbjct: 40  NLKFGKMIHAHLIITNQATKDNIVQVNSLINLYAKCDQIMVARILFDGMRKRNVVSWGAL 99

Query: 245 ISGYAQHGKGEKALRLFDKMKD-EGMKPDSITFVALLLACNHAGLVDLGIQ 294
           ++GY  +G   + LRLF  M   + M+P+   F  ++ +C+ +G V  G Q
Sbjct: 100 MAGYFHNGLVLEVLRLFKTMISVDYMRPNEYIFATIISSCSDSGQVVEGWQ 150


>gi|242037817|ref|XP_002466303.1| hypothetical protein SORBIDRAFT_01g005310 [Sorghum bicolor]
 gi|241920157|gb|EER93301.1| hypothetical protein SORBIDRAFT_01g005310 [Sorghum bicolor]
          Length = 606

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 213/538 (39%), Positives = 302/538 (56%), Gaps = 23/538 (4%)

Query: 23  LKDAQELFDKIPQP-DVVSYNIMLSCILLNSD----DVVAAFDFFQRL----PIKDTASW 73
           L  A+++FD++P P D V YN +L     +S+    +  AA   F R+       DT ++
Sbjct: 77  LAYARQVFDRVPHPADAVWYNTLLRGYARSSNPSSSEAAAAVRVFVRMLEEGVAPDTYTF 136

Query: 74  NTMISGFV-----QKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAP 128
            +++         ++   A A  + L   + + V    +I+ Y ECG    A  +F    
Sbjct: 137 VSLLKACAAARAGEEGRQAHALAVKLGAADHDYVR-PTLINMYAECGDARAARVMFGGTD 195

Query: 129 VKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSL 188
              VV++ AMI+       V +S   + L L R M G G++P + ++ SVL  C+ L +L
Sbjct: 196 GGCVVSYNAMIAAA-----VRSSRPGEALVLFREMQGKGLKPTSVTVISVLSACALLGAL 250

Query: 189 QLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGY 248
           +LG+ VH  V K  L       T LI MY KCG LEDA  +F  ++ KD   W+ MI  Y
Sbjct: 251 ELGRWVHDYVRKIGLGSLVKVSTALIDMYAKCGSLEDAIDVFQGMESKDRQAWSVMIVAY 310

Query: 249 AQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK 308
           A HG G +A+ LF++MK EGMKPD ITF+ +L AC+H+GLV  G+QYFD M  D+GI   
Sbjct: 311 ANHGYGREAISLFEEMKKEGMKPDDITFLGVLYACSHSGLVSEGLQYFDDM-KDHGIVPG 369

Query: 309 PDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLF 368
             HY C+ DLL R+G+L  A   I ++P  P P ++ TLLSAC  H   +L +     + 
Sbjct: 370 IKHYGCVTDLLARSGQLERAYKFIDELPINPTPILWRTLLSACGGHGDFELGKRVFERIL 429

Query: 369 NLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSG 428
            L+ ++  G YV  +N+ A    W+++  +R  M E  VVK+PG S IE+   VHEF +G
Sbjct: 430 KLDDSH-GGDYVIFSNLCANTGYWEEMNMVRKLMSEKGVVKVPGCSSIEIDNTVHEFFAG 488

Query: 429 DRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHA-VGEEVKEQLLLFHSEKLAIAFGL 487
           D  HP+     + + E+  ++KL GYVP+     H  +GEE K   L +HSEKLAIAFGL
Sbjct: 489 DGRHPKSQEARKMVDEVIDQLKLVGYVPNTSHVFHVEMGEEEKAISLKYHSEKLAIAFGL 548

Query: 488 IKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           +    G  +RV KNLRVC DCH   K +S +  R II+RD  RFHHF++G CSCGDYW
Sbjct: 549 LNTAPGATLRVVKNLRVCPDCHSMAKLVSMVFNRRIILRDLNRFHHFEEGICSCGDYW 606


>gi|449479601|ref|XP_004155648.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Cucumis sativus]
          Length = 663

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 203/539 (37%), Positives = 306/539 (56%), Gaps = 26/539 (4%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIML---SCILLNSDDVVAAFDFFQRLPIKDTASWNTMI 77
           G +  A+ LF  +P PD   ++ +L   S    + D V+    F++R+        N   
Sbjct: 137 GSITYARRLFPTVPNPDSFLFDSLLKVTSKFGFSIDTVL----FYRRMLFSGAPQSNYTF 192

Query: 78  SGFVQKKNMAKARDLFLAMPEKNSVS----------WSAMISGYIECGQLDKAVELFKVA 127
           +  +  K  A    L L     + V            +A+I+ Y +   +  A ++F   
Sbjct: 193 TSVI--KACADLSALRLGKEIHSHVMVCGYGSDMYVQAALIALYAKASDMKVAKKVFDAM 250

Query: 128 PVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSS 187
           P ++++AW ++ISGY      +N   ++ + L  +M+  G +P+++++ S+L  CS L +
Sbjct: 251 PQRTIIAWNSLISGY-----DQNGLPQESIGLFHLMMESGFQPDSATIVSLLSSCSQLGA 305

Query: 188 LQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISG 247
           L  G  +H     +    +    T LI+MY +CG++  A ++F  ++ ++VVTW AMISG
Sbjct: 306 LDFGCWLHDYADGNGFDLNVVLGTSLINMYTRCGNVSKAREVFDSMKERNVVTWTAMISG 365

Query: 248 YAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAA 307
           Y  HG G +A+ LF +M+  G +P++ITFVA+L AC H+GL+D G + F SM   YG+  
Sbjct: 366 YGMHGYGRQAMELFTEMRAYGPRPNNITFVAVLSACAHSGLIDDGRRVFSSMKEAYGLVP 425

Query: 308 KPDHYTCMVDLLGRAGKLVEAVDLIKK-MPFKPQPAIFGTLLSACRVHKRLDLAEFAAMN 366
             +H  CMVD+ GRAG L +A   IKK +P +P PA++ ++L ACR+H+  DL    A +
Sbjct: 426 GVEHNVCMVDMFGRAGLLNDAYQFIKKFIPKEPGPAVWTSMLGACRMHRNFDLGVKVAEH 485

Query: 367 LFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFR 426
           + ++ P N  G YV L+NIYA   + D V  +R  M    + K  GYS IE+    + F 
Sbjct: 486 VLSVEPENP-GHYVMLSNIYALAGRMDRVEMVRNMMTRRRLKKQVGYSTIEINRKTYLFS 544

Query: 427 SGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFG 486
            GD+ HP+  +I+  L EL  R   +GYVP  E  +H + EE ++  L +HSEKLA+AFG
Sbjct: 545 MGDKSHPQTNTIYRYLDELMCRCSESGYVPAPESLMHDLEEEERDYALRYHSEKLALAFG 604

Query: 487 LIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           L+K   G  IR+ KNLR+C DCH A K+IS I  REIIVRD  RFHHFKDG+CSC DYW
Sbjct: 605 LLKTNQGETIRIVKNLRICEDCHSAIKHISIIADREIIVRDKFRFHHFKDGSCSCLDYW 663



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 81/305 (26%), Positives = 144/305 (47%), Gaps = 17/305 (5%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI 164
           + +IS     G +  A  LF   P      + +++    KFG+     + D +   R M+
Sbjct: 127 TKLISLVCTAGSITYARRLFPTVPNPDSFLFDSLLKVTSKFGF-----SIDTVLFYRRML 181

Query: 165 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 224
             G   +  + +SV+  C+ LS+L+LGK++H  V       D      LI++Y K  D++
Sbjct: 182 FSGAPQSNYTFTSVIKACADLSALRLGKEIHSHVMVCGYGSDMYVQAALIALYAKASDMK 241

Query: 225 DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 284
            A K+F  + ++ ++ WN++ISGY Q+G  ++++ LF  M + G +PDS T V+LL +C+
Sbjct: 242 VAKKVFDAMPQRTIIAWNSLISGYDQNGLPQESIGLFHLMMESGFQPDSATIVSLLSSCS 301

Query: 285 HAGLVDLGI---QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQP 341
             G +D G     Y D    D  +       T ++++  R G + +A ++   M  +   
Sbjct: 302 QLGALDFGCWLHDYADGNGFDLNVVLG----TSLINMYTRCGNVSKAREVFDSMKER-NV 356

Query: 342 AIFGTLLSACRVH--KRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIR 399
             +  ++S   +H   R  +  F  M  +   P N    +V + +  A     DD  R+ 
Sbjct: 357 VTWTAMISGYGMHGYGRQAMELFTEMRAYGPRPNNIT--FVAVLSACAHSGLIDDGRRVF 414

Query: 400 LSMKE 404
            SMKE
Sbjct: 415 SSMKE 419



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 79/347 (22%), Positives = 148/347 (42%), Gaps = 78/347 (22%)

Query: 11  SVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNS--DDVVAAFDFFQRLPIK 68
           +++A +AK    +K A+++FD +PQ  ++++N ++S    N    + +  F        +
Sbjct: 229 ALIALYAKA-SDMKVAKKVFDAMPQRTIIAWNSLISGYDQNGLPQESIGLFHLMMESGFQ 287

Query: 69  -DTASWNTMISGFVQK---------KNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLD 118
            D+A+  +++S   Q           + A      L     N V  +++I+ Y  CG + 
Sbjct: 288 PDSATIVSLLSSCSQLGALDFGCWLHDYADGNGFDL-----NVVLGTSLINMYTRCGNVS 342

Query: 119 KAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSV 178
           KA E+F     ++VV WTAMISGY   GY         ++L   M   G RPN  +  +V
Sbjct: 343 KAREVFDSMKERNVVTWTAMISGYGMHGY-----GRQAMELFTEMRAYGPRPNNITFVAV 397

Query: 179 LLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTP-------LISMYCKCGDLEDACKLFL 231
           L  C+H   +  G++    VF S   K+   L P       ++ M+ + G L DA +   
Sbjct: 398 LSACAHSGLIDDGRR----VFSS--MKEAYGLVPGVEHNVCMVDMFGRAGLLNDAYQFIK 451

Query: 232 EIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDL 291
           +   K+                                 P    + ++L AC      DL
Sbjct: 452 KFIPKE---------------------------------PGPAVWTSMLGACRMHRNFDL 478

Query: 292 GIQYFDSMVNDYGIAAKPD---HYTCMVDLLGRAGKLVEAVDLIKKM 335
           G++     V ++ ++ +P+   HY  + ++   AG++ + V++++ M
Sbjct: 479 GVK-----VAEHVLSVEPENPGHYVMLSNIYALAGRM-DRVEMVRNM 519



 Score = 55.5 bits (132), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 62/261 (23%), Positives = 103/261 (39%), Gaps = 55/261 (21%)

Query: 192 KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQH 251
           +QVH  +  S L +  + LT LIS+ C  G +  A +LF  +   D   +++++   ++ 
Sbjct: 108 QQVHAHIIVSGLHRSRSLLTKLISLVCTAGSITYARRLFPTVPNPDSFLFDSLLKVTSKF 167

Query: 252 GKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ-YFDSMVNDYGIAAKPD 310
           G     +  + +M   G    + TF +++ AC     + LG + +   MV  YG     D
Sbjct: 168 GFSIDTVLFYRRMLFSGAPQSNYTFTSVIKACADLSALRLGKEIHSHVMVCGYG----SD 223

Query: 311 HY--TCMVDLLGRAGKLVEAVDLIKKMP-------------------------------- 336
            Y    ++ L  +A  +  A  +   MP                                
Sbjct: 224 MYVQAALIALYAKASDMKVAKKVFDAMPQRTIIAWNSLISGYDQNGLPQESIGLFHLMME 283

Query: 337 --FKPQPAIFGTLLSACRVHKRLD----LAEFAAMNLFNLN---PANAAGCYVQLANIYA 387
             F+P  A   +LLS+C     LD    L ++A  N F+LN     +    Y +  N+  
Sbjct: 284 SGFQPDSATIVSLLSSCSQLGALDFGCWLHDYADGNGFDLNVVLGTSLINMYTRCGNVSK 343

Query: 388 AMKKWDDVARIRLSMKENNVV 408
           A + +D       SMKE NVV
Sbjct: 344 AREVFD-------SMKERNVV 357


>gi|356531902|ref|XP_003534515.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At3g23330-like [Glycine max]
          Length = 1011

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 207/591 (35%), Positives = 319/591 (53%), Gaps = 63/591 (10%)

Query: 10   NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
            NS+L  + K +   + A+ +F+ + + DVVS+NIM+S   L + DV  + D F+RLP KD
Sbjct: 429  NSILDLYLKCK-VFEYAERVFELMNEGDVVSWNIMISA-YLRAGDVEKSLDMFRRLPYKD 486

Query: 70   TASWNTMISGFVQKKNMAKARDLFLAMPE------------------------------- 98
              SWNT++ G +Q     +A +    M E                               
Sbjct: 487  VVSWNTIVDGLMQFGYERQALEQLYCMVECGTEFSVVTFSIALILSSSLSLVELGRQLHG 546

Query: 99   --------KNSVSWSAMISGYIECGQLDKAVELFKVAPVK----------------SVVA 134
                    ++    S+++  Y +CG++D A  + K  P+                  +V+
Sbjct: 547  MVLKFGFCRDGFIRSSLVEMYCKCGRMDNASIVLKDVPLDFLKNGNAGVTCKELKAGIVS 606

Query: 135  WTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQV 194
            W  M+SGY     V N   EDGLK  R+M+   +  +  ++++++  C++   L+ G+ V
Sbjct: 607  WGLMVSGY-----VWNGKYEDGLKTFRLMVRELVVVDIRTVTTIISACANAGILEFGRHV 661

Query: 195  HQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKG 254
            H    K     D    + LI MY K G L+DA  +F +    ++V W +MISG A HG+G
Sbjct: 662  HAYNHKIGHRIDAYVGSSLIDMYSKSGSLDDAWTIFRQTNEPNIVFWTSMISGCALHGQG 721

Query: 255  EKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTC 314
            ++A+ LF++M ++G+ P+ +TF+ +L AC HAGL++ G +YF  M + Y I    +H T 
Sbjct: 722  KQAICLFEEMLNQGIIPNEVTFLGVLNACCHAGLLEEGCRYFRMMKDAYCINPGVEHCTS 781

Query: 315  MVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPAN 374
            MVDL GRAG L E  + I +       +++ + LS+CR+HK +++ ++ +  L  + P++
Sbjct: 782  MVDLYGRAGHLTETKNFIFENGISHLTSVWKSFLSSCRLHKNVEMGKWVSEMLLQVAPSD 841

Query: 375  AAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPE 434
              G YV L+N+ A+  +WD+ AR+R  M +  + K PG SWI++   +H F  GDR HP+
Sbjct: 842  P-GAYVLLSNMCASNHRWDEAARVRSLMHQRGIKKQPGQSWIQLKDQIHTFIMGDRSHPQ 900

Query: 435  LVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGT 494
               I+  L  L  R+K  GY  D++  +  V EE  E L+  HSEKLA+ FG+I     T
Sbjct: 901  DEEIYSYLDILIGRLKEIGYSFDVKLVMQDVEEEQGEVLISHHSEKLAVVFGIINTANRT 960

Query: 495  PIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
            PIR+ KNLR+C DCH   KY S +  REII+RD  RFHHFK G CSCGDYW
Sbjct: 961  PIRIIKNLRICTDCHNFIKYASQLLDREIILRDIHRFHHFKHGGCSCGDYW 1011



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 101/409 (24%), Positives = 189/409 (46%), Gaps = 69/409 (16%)

Query: 6   TVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCI-LLNSDDVVAAFDFFQR 64
           T+N  + L     +   +  A++LFD+IPQ +  ++ I++S      S +VV  F  F+ 
Sbjct: 323 TLNSANYLLTLYVKSSNMDHARKLFDEIPQRNTQTWTILISGFSRAGSSEVV--FKLFRE 380

Query: 65  LPIK---------------------------------------DTASWNTMISGFVQKKN 85
           +  K                                       D    N+++  +++ K 
Sbjct: 381 MRAKGACPNQYTLSSLFKCCSLDINLQLGKGVHAWMLRNGIDADVVLGNSILDLYLKCKV 440

Query: 86  MAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKF 145
              A  +F  M E + VSW+ MIS Y+  G ++K++++F+  P K VV+W  ++ G M+F
Sbjct: 441 FEYAERVFELMNEGDVVSWNIMISAYLRAGDVEKSLDMFRRLPYKDVVSWNTIVDGLMQF 500

Query: 146 GYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCK 205
           GY         L+ L  M+  G   +  + S  L+  S LS ++LG+Q+H +V K   C+
Sbjct: 501 GY-----ERQALEQLYCMVECGTEFSVVTFSIALILSSSLSLVELGRQLHGMVLKFGFCR 555

Query: 206 DTTALTPLISMYCKCGDLEDACKLFLEIQ----------------RKDVVTWNAMISGYA 249
           D    + L+ MYCKCG +++A  +  ++                 +  +V+W  M+SGY 
Sbjct: 556 DGFIRSSLVEMYCKCGRMDNASIVLKDVPLDFLKNGNAGVTCKELKAGIVSWGLMVSGYV 615

Query: 250 QHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKP 309
            +GK E  L+ F  M  E +  D  T   ++ AC +AG+++ G         ++ I  + 
Sbjct: 616 WNGKYEDGLKTFRLMVRELVVVDIRTVTTIISACANAGILEFGRHVH---AYNHKIGHRI 672

Query: 310 DHY--TCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKR 356
           D Y  + ++D+  ++G L +A  + ++   +P    + +++S C +H +
Sbjct: 673 DAYVGSSLIDMYSKSGSLDDAWTIFRQTN-EPNIVFWTSMISGCALHGQ 720



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 42/175 (24%), Positives = 82/175 (46%), Gaps = 30/175 (17%)

Query: 194 VHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGK 253
           +H L  K+   +   +   L+++Y K  +++ A KLF EI +++  TW  +ISG+++ G 
Sbjct: 311 LHALSVKNGSLQTLNSANYLLTLYVKSSNMDHARKLFDEIPQRNTQTWTILISGFSRAGS 370

Query: 254 GEKALRLFDKMKDEGMKPDSITFVALLLACN-----------HAGLVDLGIQ-------- 294
            E   +LF +M+ +G  P+  T  +L   C+           HA ++  GI         
Sbjct: 371 SEVVFKLFREMRAKGACPNQYTLSSLFKCCSLDINLQLGKGVHAWMLRNGIDADVVLGNS 430

Query: 295 ----YFDSMVNDYG-----IAAKPD--HYTCMVDLLGRAGKLVEAVDLIKKMPFK 338
               Y    V +Y      +  + D   +  M+    RAG + +++D+ +++P+K
Sbjct: 431 ILDLYLKCKVFEYAERVFELMNEGDVVSWNIMISAYLRAGDVEKSLDMFRRLPYK 485


>gi|5262157|emb|CAB45786.1| putative protein (fragment) [Arabidopsis thaliana]
 gi|7267600|emb|CAB80912.1| putative protein (fragment) [Arabidopsis thaliana]
          Length = 500

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 196/496 (39%), Positives = 295/496 (59%), Gaps = 22/496 (4%)

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISGYIECGQL 117
           F  +  K+  +WN+++SG      +  A  L + M ++    ++++W+++ SGY   G+ 
Sbjct: 15  FDMMDAKNIVAWNSLVSGLSYACLLKDAEALMIRMEKEGIKPDAITWNSLASGYATLGKP 74

Query: 118 DKAVELFK------VAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPN 171
           +KA+++        VAP  +VV+WTA+ SG  K G   N+     LK+   M   G+ PN
Sbjct: 75  EKALDVIGKMKEKGVAP--NVVSWTAIFSGCSKNGNFRNA-----LKVFIKMQEEGVGPN 127

Query: 172 ASSLSSVL--LGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 229
           A+++S++L  LGC  LS L  GK+VH    +  L  D    T L+ MY K GDL+ A ++
Sbjct: 128 AATMSTLLKILGC--LSLLHSGKEVHGFCLRKNLICDAYVATALVDMYGKSGDLQSAIEI 185

Query: 230 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLV 289
           F  I+ K + +WN M+ GYA  G+GE+ +  F  M + GM+PD+ITF ++L  C ++GLV
Sbjct: 186 FWGIKNKSLASWNCMLMGYAMFGRGEEGIAAFSVMLEAGMEPDAITFTSVLSVCKNSGLV 245

Query: 290 DLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLS 349
             G +YFD M + YGI    +H +CMVDLLGR+G L EA D I+ M  KP   I+G  LS
Sbjct: 246 QEGWKYFDLMRSRYGIIPTIEHCSCMVDLLGRSGYLDEAWDFIQTMSLKPDATIWGAFLS 305

Query: 350 ACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVK 409
           +C++H+ L+LAE A   L  L P N+A  Y+ + N+Y+ + +W+DV RIR  M+ N V  
Sbjct: 306 SCKIHRDLELAEIAWKRLQVLEPHNSAN-YMMMINLYSNLNRWEDVERIRNLMRNNRVRV 364

Query: 410 MPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEV 469
              +SWI++   VH F +  + HP+   I+ +L +L   MK +GYVPD       + +  
Sbjct: 365 QDLWSWIQIDQTVHIFYAEGKTHPDEGDIYFELYKLVSEMKKSGYVPDTSCIHQDISDSE 424

Query: 470 KEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTT 529
           KE+LL+ H+EKLA+ +GLIK     PIRV KN  +C D H   KY+S +  REI++++  
Sbjct: 425 KEKLLMGHTEKLAMTYGLIKKKGLAPIRVVKNTNICSDSHTVAKYMSVLRNREIVLQEGA 484

Query: 530 RFHHFKDGTCSCGDYW 545
           R HHF+DG CSC D W
Sbjct: 485 RVHHFRDGKCSCNDSW 500



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 73/308 (23%), Positives = 123/308 (39%), Gaps = 72/308 (23%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIP----QPDVVSYNIMLSCI-LLNSDDV 55
           M+ K  V WNS+++G +     LKDA+ L  ++     +PD +++N + S    L   + 
Sbjct: 18  MDAKNIVAWNSLVSGLS-YACLLKDAEALMIRMEKEGIKPDAITWNSLASGYATLGKPE- 75

Query: 56  VAAFDFFQRLPIKDTA----SWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWS-- 105
             A D   ++  K  A    SW  + SG  +  N   A  +F+ M E+    N+ + S  
Sbjct: 76  -KALDVIGKMKEKGVAPNVVSWTAIFSGCSKNGNFRNALKVFIKMQEEGVGPNAATMSTL 134

Query: 106 ---------------------------------AMISGYIECGQLDKAVELFKVAPVKSV 132
                                            A++  Y + G L  A+E+F     KS+
Sbjct: 135 LKILGCLSLLHSGKEVHGFCLRKNLICDAYVATALVDMYGKSGDLQSAIEIFWGIKNKSL 194

Query: 133 VAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGK 192
            +W  M+ GY  FG       E+G+    +M+  G+ P+A + +SVL  C +   +Q G 
Sbjct: 195 ASWNCMLMGYAMFGR-----GEEGIAAFSVMLEAGMEPDAITFTSVLSVCKNSGLVQEGW 249

Query: 193 QVHQLVFKSPLCKDTTALTPLISMYCKC--------GDLEDACKLFLEIQRK-DVVTWNA 243
           +   L+      +    + P I  +C C        G L++A      +  K D   W A
Sbjct: 250 KYFDLM------RSRYGIIPTIE-HCSCMVDLLGRSGYLDEAWDFIQTMSLKPDATIWGA 302

Query: 244 MISGYAQH 251
            +S    H
Sbjct: 303 FLSSCKIH 310



 Score = 48.5 bits (114), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 62/136 (45%), Gaps = 4/136 (2%)

Query: 216 MYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSIT 275
           MY K G L  A  +F  +  K++V WN+++SG +     + A  L  +M+ EG+KPD+IT
Sbjct: 1   MYIKTGYLPYARMVFDMMDAKNIVAWNSLVSGLSYACLLKDAEALMIRMEKEGIKPDAIT 60

Query: 276 FVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335
           + +L       G  +  +     M  + G+A     +T +     + G    A+ +  KM
Sbjct: 61  WNSLASGYATLGKPEKALDVIGKM-KEKGVAPNVVSWTAIFSGCSKNGNFRNALKVFIKM 119

Query: 336 P---FKPQPAIFGTLL 348
                 P  A   TLL
Sbjct: 120 QEEGVGPNAATMSTLL 135


>gi|449497733|ref|XP_004160501.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
            protein At4g13650-like [Cucumis sativus]
          Length = 1037

 Score =  370 bits (950), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 202/527 (38%), Positives = 296/527 (56%), Gaps = 45/527 (8%)

Query: 58   AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK------------------ 99
            A    +RLP  D  SW  MI+G+VQ    ++A  LF  M  +                  
Sbjct: 517  ALRILRRLPEDDVVSWTAMIAGYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAG 576

Query: 100  ----------NSVSWSA-----------MISGYIECGQLDKAVELFKVAPVKSVVAWTAM 138
                      ++ S++A           +IS Y  CG++ +A   F+    K+ ++W ++
Sbjct: 577  IRALRQGQQIHAQSYAAGFGADLSINNALISLYARCGRIQEAYLAFEKIGDKNNISWNSL 636

Query: 139  ISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLV 198
            +SG  + GY E     + L++   M+      N  +  S +   + L++++ G+Q+H +V
Sbjct: 637  VSGLAQSGYFE-----EALQVFVRMLRTEAEVNMFTYGSAISAAASLANIKQGQQIHSMV 691

Query: 199  FKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKAL 258
             K+    +      LIS+Y K G + DA + F ++  ++V++WNAMI+GY+QHG G +AL
Sbjct: 692  LKTGYDSEREVSNSLISLYAKSGSISDAWREFNDMSERNVISWNAMITGYSQHGCGMEAL 751

Query: 259  RLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDL 318
            RLF++MK  G+ P+ +TFV +L AC+H GLV  G+ YF+SM   + +  K +HY C+VDL
Sbjct: 752  RLFEEMKVCGIMPNHVTFVGVLSACSHIGLVKEGLDYFESMFKIHDLVPKSEHYVCVVDL 811

Query: 319  LGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGC 378
            LGRAG+L  A++ IK+MP      I+ TLLSAC +HK +++ E AA +L  L P ++A  
Sbjct: 812  LGRAGQLDRAMEYIKEMPIPADAMIWRTLLSACVIHKNIEIGERAAHHLLELEPEDSA-T 870

Query: 379  YVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSI 438
            YV ++NIYA  ++W      R  MK+  V K PG SWIEV   VH F +GD++HP    I
Sbjct: 871  YVLISNIYAVSRQWIHRDWSRKLMKDXGVKKEPGRSWIEVKNAVHAFYAGDKLHPLTNQI 930

Query: 439  HEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRV 498
            +E +  L +R    GYV D    L+   +  K+ +   HSEKLAIAFGL+ +    PIRV
Sbjct: 931  YEYIGHLNRRTSEIGYVQDSFSLLNESEQGQKDPITHVHSEKLAIAFGLLSLGNNIPIRV 990

Query: 499  FKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
             KNLRVC DCH   KY+S I  R IIVRD  RFHHF  G CSC D+W
Sbjct: 991  MKNLRVCNDCHNWIKYVSKISNRSIIVRDAHRFHHFDGGVCSCKDFW 1037



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 93/334 (27%), Positives = 161/334 (48%), Gaps = 16/334 (4%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLN--SDDVVAAFDFFQRLPI 67
           N ++A +++ R KL  A+ +F  +   D VSYN ++S ++    SD  +  F   QR  +
Sbjct: 300 NGLVALYSRSR-KLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCL 358

Query: 68  K-DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISG-----YIECGQLDKAV 121
           K D  +  +++S       + K   L  +   K  +S   ++ G     Y +C  ++ A 
Sbjct: 359 KPDCITVASLLSACASVGALHKGMQLH-SHAIKAGMSADIILEGSLLDLYSKCADVETAH 417

Query: 122 ELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLG 181
           + F     +++V W  M+  Y   G ++N    D  ++ R M   G+ PN  +  S+L  
Sbjct: 418 KFFLXTETENIVLWNVMLVAY---GQLDN--LSDSFEIFRQMQMEGMIPNQFTYPSILRT 472

Query: 182 CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTW 241
           C+ L +L LG+Q+H  V K+    +    + LI MY K G L  A ++   +   DVV+W
Sbjct: 473 CTSLGALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSW 532

Query: 242 NAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN 301
            AMI+GY QH    +AL+LF++M+  G++ D+I F + + AC     +  G Q   +   
Sbjct: 533 TAMIAGYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQG-QQIHAQSY 591

Query: 302 DYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335
             G  A       ++ L  R G++ EA    +K+
Sbjct: 592 AAGFGADLSINNALISLYARCGRIQEAYLAFEKI 625



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 81/344 (23%), Positives = 162/344 (47%), Gaps = 51/344 (14%)

Query: 3   VKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFF 62
           +K  V W ++++G + Q G  ++A  LF  +   ++     +LS +L ++   +  F+  
Sbjct: 223 MKDIVTWVAMISGLS-QNGLEEEAILLFCDMHASEIFPTPYVLSSVL-SASTKIQLFELG 280

Query: 63  QRLPI--------KDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIEC 114
           ++L           +T   N +++ + + + +  A  +F  M  ++ VS++++ISG ++ 
Sbjct: 281 EQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQ 340

Query: 115 GQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASS 174
           G  D+A+ELF           T M                D LK           P+  +
Sbjct: 341 GFSDRALELF-----------TKM--------------QRDCLK-----------PDCIT 364

Query: 175 LSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ 234
           ++S+L  C+ + +L  G Q+H    K+ +  D      L+ +Y KC D+E A K FL  +
Sbjct: 365 VASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFLXTE 424

Query: 235 RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ 294
            +++V WN M+  Y Q      +  +F +M+ EGM P+  T+ ++L  C   G + LG Q
Sbjct: 425 TENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQ 484

Query: 295 YFDSMVNDYGIAAKPDHYTC--MVDLLGRAGKLVEAVDLIKKMP 336
               ++       + + Y C  ++D+  + G+L  A+ +++++P
Sbjct: 485 IHTHVIK---TGFQLNVYVCSVLIDMYAKYGQLALALRILRRLP 525



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 77/286 (26%), Positives = 132/286 (46%), Gaps = 17/286 (5%)

Query: 19  QRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMIS 78
           + G    A ++FD+     V S+N M+   +    +    F  F+R+  +         +
Sbjct: 105 RHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNF-QVFCLFRRMLAEGITPNGYTFA 163

Query: 79  GFVQK----------KNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAP 128
           G ++                +R  +        V+ + +I  Y + G ++ A ++F    
Sbjct: 164 GVLKACVGGDIAFNYVKQVHSRTFYYGFDSSPLVA-NLLIDLYSKNGYIESAKKVFNCIC 222

Query: 129 VKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSL 188
           +K +V W AMISG       +N   E+ + L   M    I P    LSSVL   + +   
Sbjct: 223 MKDIVTWVAMISGLS-----QNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLF 277

Query: 189 QLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGY 248
           +LG+Q+H LV K     +T     L+++Y +   L  A ++F  +  +D V++N++ISG 
Sbjct: 278 ELGEQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGL 337

Query: 249 AQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ 294
            Q G  ++AL LF KM+ + +KPD IT  +LL AC   G +  G+Q
Sbjct: 338 VQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQ 383



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 71/233 (30%), Positives = 103/233 (44%), Gaps = 11/233 (4%)

Query: 106 AMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIG 165
           +++  Y   G    AV++F     +SV +W  MI  +     V          L R M+ 
Sbjct: 98  SLVDNYFRHGDQHGAVKVFDENSNRSVFSWNKMIHVF-----VAQKSNFQVFCLFRRMLA 152

Query: 166 LGIRPNASSLSSVLLGCSHLS-SLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 224
            GI PN  + + VL  C     +    KQVH   F             LI +Y K G +E
Sbjct: 153 EGITPNGYTFAGVLKACVGGDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIE 212

Query: 225 DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 284
            A K+F  I  KD+VTW AMISG +Q+G  E+A+ LF  M    + P      ++L A  
Sbjct: 213 SAKKVFNCICMKDIVTWVAMISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSAST 272

Query: 285 HAGLVDLGIQYFDSMVNDYGIAAKPDHYTC--MVDLLGRAGKLVEAVDLIKKM 335
              L +LG Q    +V  +G  ++   Y C  +V L  R+ KL+ A  +   M
Sbjct: 273 KIQLFELGEQ-LHCLVIKWGFHSET--YVCNGLVALYSRSRKLISAERIFSTM 322



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 75/172 (43%)

Query: 157 LKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISM 216
           ++L+  M   G+R N  +   +L GC    SL    ++H  + KS    +   +  L+  
Sbjct: 43  IQLMNFMEERGVRSNYQNYLWLLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSLVDN 102

Query: 217 YCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITF 276
           Y + GD   A K+F E   + V +WN MI  +       +   LF +M  EG+ P+  TF
Sbjct: 103 YFRHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTF 162

Query: 277 VALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEA 328
             +L AC    +    ++   S    YG  + P     ++DL  + G +  A
Sbjct: 163 AGVLKACVGGDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESA 214


>gi|449434342|ref|XP_004134955.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Cucumis sativus]
          Length = 599

 Score =  370 bits (950), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 203/539 (37%), Positives = 306/539 (56%), Gaps = 26/539 (4%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIML---SCILLNSDDVVAAFDFFQRLPIKDTASWNTMI 77
           G +  A+ LF  +P PD   ++ +L   S    + D V+    F++R+        N   
Sbjct: 73  GSITYARRLFPTVPNPDSFLFDSLLKVTSKFGFSIDTVL----FYRRMLFSGAPQSNYTF 128

Query: 78  SGFVQKKNMAKARDLFLAMPEKNSVS----------WSAMISGYIECGQLDKAVELFKVA 127
           +  +  K  A    L L     + V            +A+I+ Y +   +  A ++F   
Sbjct: 129 TSVI--KACADLSALRLGKEIHSHVMVCGYGSDMYVQAALIALYAKASDMKVAKKVFDAM 186

Query: 128 PVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSS 187
           P ++++AW ++ISGY      +N   ++ + L  +M+  G +P+++++ S+L  CS L +
Sbjct: 187 PQRTIIAWNSLISGY-----DQNGLPQESIGLFHLMMESGFQPDSATIVSLLSSCSQLGA 241

Query: 188 LQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISG 247
           L  G  +H     +    +    T LI+MY +CG++  A ++F  ++ ++VVTW AMISG
Sbjct: 242 LDFGCWLHDYADGNGFDLNVVLGTSLINMYTRCGNVSKAREVFDSMKERNVVTWTAMISG 301

Query: 248 YAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAA 307
           Y  HG G +A+ LF +M+  G +P++ITFVA+L AC H+GL+D G + F SM   YG+  
Sbjct: 302 YGMHGYGRQAMELFTEMRAYGPRPNNITFVAVLSACAHSGLIDDGRRVFSSMKEAYGLVP 361

Query: 308 KPDHYTCMVDLLGRAGKLVEAVDLIKK-MPFKPQPAIFGTLLSACRVHKRLDLAEFAAMN 366
             +H  CMVD+ GRAG L +A   IKK +P +P PA++ ++L ACR+H+  DL    A +
Sbjct: 362 GVEHNVCMVDMFGRAGLLNDAYQFIKKFIPKEPGPAVWTSMLGACRMHRNFDLGVKVAEH 421

Query: 367 LFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFR 426
           + ++ P N  G YV L+NIYA   + D V  +R  M    + K  GYS IE+    + F 
Sbjct: 422 VLSVEPENP-GHYVMLSNIYALAGRMDRVEMVRNMMTRRRLKKQVGYSTIEINRKTYLFS 480

Query: 427 SGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFG 486
            GD+ HP+  +I+  L EL  R   +GYVP  E  +H + EE ++  L +HSEKLA+AFG
Sbjct: 481 MGDKSHPQTNTIYRYLDELMCRCSESGYVPAPESLMHDLEEEERDYALRYHSEKLALAFG 540

Query: 487 LIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           L+K   G  IR+ KNLR+C DCH A K+IS I  REIIVRD  RFHHFKDG+CSC DYW
Sbjct: 541 LLKTNQGETIRIVKNLRICEDCHSAIKHISIIADREIIVRDKFRFHHFKDGSCSCLDYW 599



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 81/305 (26%), Positives = 144/305 (47%), Gaps = 17/305 (5%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI 164
           + +IS     G +  A  LF   P      + +++    KFG+     + D +   R M+
Sbjct: 63  TKLISLVCTAGSITYARRLFPTVPNPDSFLFDSLLKVTSKFGF-----SIDTVLFYRRML 117

Query: 165 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 224
             G   +  + +SV+  C+ LS+L+LGK++H  V       D      LI++Y K  D++
Sbjct: 118 FSGAPQSNYTFTSVIKACADLSALRLGKEIHSHVMVCGYGSDMYVQAALIALYAKASDMK 177

Query: 225 DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 284
            A K+F  + ++ ++ WN++ISGY Q+G  ++++ LF  M + G +PDS T V+LL +C+
Sbjct: 178 VAKKVFDAMPQRTIIAWNSLISGYDQNGLPQESIGLFHLMMESGFQPDSATIVSLLSSCS 237

Query: 285 HAGLVDLGI---QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQP 341
             G +D G     Y D    D  +       T ++++  R G + +A ++   M  +   
Sbjct: 238 QLGALDFGCWLHDYADGNGFDLNVVLG----TSLINMYTRCGNVSKAREVFDSMKER-NV 292

Query: 342 AIFGTLLSACRVH--KRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIR 399
             +  ++S   +H   R  +  F  M  +   P N    +V + +  A     DD  R+ 
Sbjct: 293 VTWTAMISGYGMHGYGRQAMELFTEMRAYGPRPNNIT--FVAVLSACAHSGLIDDGRRVF 350

Query: 400 LSMKE 404
            SMKE
Sbjct: 351 SSMKE 355



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 87/349 (24%), Positives = 145/349 (41%), Gaps = 93/349 (26%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIP----QPDVVSYNIMLSCILLNSDDVV 56
           M  +T + WNS+++G+  Q G  +++  LF  +     QPD  +        LL+S   +
Sbjct: 186 MPQRTIIAWNSLISGY-DQNGLPQESIGLFHLMMESGFQPDSATI-----VSLLSSCSQL 239

Query: 57  AAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQ 116
            A DF   L   D A  N    GF          DL       N V  +++I+ Y  CG 
Sbjct: 240 GALDFGCWL--HDYADGN----GF----------DL-------NVVLGTSLINMYTRCGN 276

Query: 117 LDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLS 176
           + KA E+F     ++VV WTAMISGY   GY         ++L   M   G RPN  +  
Sbjct: 277 VSKAREVFDSMKERNVVTWTAMISGYGMHGY-----GRQAMELFTEMRAYGPRPNNITFV 331

Query: 177 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTP-------LISMYCKCGDLEDACKL 229
           +VL  C+H   +  G++    VF S   K+   L P       ++ M+ + G L DA + 
Sbjct: 332 AVLSACAHSGLIDDGRR----VFSS--MKEAYGLVPGVEHNVCMVDMFGRAGLLNDAYQF 385

Query: 230 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLV 289
             +   K+                                 P    + ++L AC      
Sbjct: 386 IKKFIPKE---------------------------------PGPAVWTSMLGACRMHRNF 412

Query: 290 DLGIQYFDSMVNDYGIAAKPD---HYTCMVDLLGRAGKLVEAVDLIKKM 335
           DLG++     V ++ ++ +P+   HY  + ++   AG++ + V++++ M
Sbjct: 413 DLGVK-----VAEHVLSVEPENPGHYVMLSNIYALAGRM-DRVEMVRNM 455



 Score = 55.5 bits (132), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 62/261 (23%), Positives = 103/261 (39%), Gaps = 55/261 (21%)

Query: 192 KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQH 251
           +QVH  +  S L +  + LT LIS+ C  G +  A +LF  +   D   +++++   ++ 
Sbjct: 44  QQVHAHIIVSGLHRSRSLLTKLISLVCTAGSITYARRLFPTVPNPDSFLFDSLLKVTSKF 103

Query: 252 GKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ-YFDSMVNDYGIAAKPD 310
           G     +  + +M   G    + TF +++ AC     + LG + +   MV  YG     D
Sbjct: 104 GFSIDTVLFYRRMLFSGAPQSNYTFTSVIKACADLSALRLGKEIHSHVMVCGYG----SD 159

Query: 311 HY--TCMVDLLGRAGKLVEAVDLIKKMP-------------------------------- 336
            Y    ++ L  +A  +  A  +   MP                                
Sbjct: 160 MYVQAALIALYAKASDMKVAKKVFDAMPQRTIIAWNSLISGYDQNGLPQESIGLFHLMME 219

Query: 337 --FKPQPAIFGTLLSACRVHKRLD----LAEFAAMNLFNLN---PANAAGCYVQLANIYA 387
             F+P  A   +LLS+C     LD    L ++A  N F+LN     +    Y +  N+  
Sbjct: 220 SGFQPDSATIVSLLSSCSQLGALDFGCWLHDYADGNGFDLNVVLGTSLINMYTRCGNVSK 279

Query: 388 AMKKWDDVARIRLSMKENNVV 408
           A + +D       SMKE NVV
Sbjct: 280 AREVFD-------SMKERNVV 293


>gi|357457659|ref|XP_003599110.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355488158|gb|AES69361.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 623

 Score =  370 bits (950), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 195/526 (37%), Positives = 306/526 (58%), Gaps = 39/526 (7%)

Query: 58  AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK-----NSVSWSAMISGYI 112
           A+  F  +P KD  SWN+++SG  +   + +   +F  M        N  ++ ++IS  +
Sbjct: 99  AYLLFDEMPKKDFVSWNSLVSGLAKIGQLGECLSVFCKMKSDSELKLNEFTFLSVISACV 158

Query: 113 ECGQLDKAVEL----FKVAPVKSVVAWTAMISGYMKFGYVEN----------------SW 152
                D+   +     K+  V  V    A+++ Y KFG+VE+                SW
Sbjct: 159 SEKACDEGYYVHCCAMKLGLVYEVKVVNALVNMYGKFGFVESAFRLFSEMPESEKSIVSW 218

Query: 153 -------AEDGL-----KLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK 200
                  A++G+         MM   G  P+ +++ S+L  C +    ++ + +H ++F 
Sbjct: 219 NSIVAVCAQNGMPNEAFNCFDMMRVNGFFPDDATMVSLLQACENFPLGRMVEVLHGVIFT 278

Query: 201 SPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRL 260
             L ++ T +T L+++Y K G L ++ K+F EI + D V W AM++GYA HG G++A+  
Sbjct: 279 CGLDENLTIVTTLLNLYSKLGRLNNSRKVFEEISKPDKVAWTAMLAGYAMHGCGKEAIEF 338

Query: 261 FDKM-KDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLL 319
           F+++ ++EGM+PD +TF  LL AC+H+GLV  G  +F  M + Y +  + DHY+CMVDLL
Sbjct: 339 FERIVREEGMEPDHVTFTHLLSACSHSGLVKEGKYFFRVMSDVYKVQPRLDHYSCMVDLL 398

Query: 320 GRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCY 379
           GR G L +A +LIK MPF+P   ++G LL ACRVH+ +DL + AA NL  L+P++    Y
Sbjct: 399 GRCGLLDDAHELIKNMPFEPNSGVWGALLGACRVHRNIDLGKEAAKNLIALDPSDPRN-Y 457

Query: 380 VQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIH 439
           + L+N+Y+A   W+D +++R  MK   + +  G S+IE G  +H F   D  HP+   IH
Sbjct: 458 IMLSNMYSAAGLWNDASKVRTLMKNKVLTRNQGCSFIEHGNKIHRFVVDDYTHPDSHRIH 517

Query: 440 EKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVF 499
           +KL+E+ K+++  G+V + E  LH V EEVK  ++  HSEK+A+A+GL+      P+ + 
Sbjct: 518 KKLEEVMKKIQDVGFVHETESILHDVDEEVKIDMITKHSEKIALAYGLLVTNADMPLVII 577

Query: 500 KNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           KNLR+C DCH   K++S +EKR II+RDT RFH F  G CSCGDYW
Sbjct: 578 KNLRICRDCHNTVKFVSMVEKRTIIIRDTKRFHQFSGGLCSCGDYW 623



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 64/250 (25%), Positives = 118/250 (47%), Gaps = 8/250 (3%)

Query: 107 MISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGL 166
           ++S Y++ G    A  LF   P K  V+W +++SG  K G +    +       +M    
Sbjct: 86  LVSCYLKMGPTKDAYLLFDEMPKKDFVSWNSLVSGLAKIGQLGECLS----VFCKMKSDS 141

Query: 167 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 226
            ++ N  +  SV+  C    +   G  VH    K  L  +   +  L++MY K G +E A
Sbjct: 142 ELKLNEFTFLSVISACVSEKACDEGYYVHCCAMKLGLVYEVKVVNALVNMYGKFGFVESA 201

Query: 227 CKLFLEI--QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 284
            +LF E+    K +V+WN++++  AQ+G   +A   FD M+  G  PD  T V+LL AC 
Sbjct: 202 FRLFSEMPESEKSIVSWNSIVAVCAQNGMPNEAFNCFDMMRVNGFFPDDATMVSLLQACE 261

Query: 285 HAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIF 344
           +  L  + ++    ++   G+       T +++L  + G+L  +  + +++  KP    +
Sbjct: 262 NFPLGRM-VEVLHGVIFTCGLDENLTIVTTLLNLYSKLGRLNNSRKVFEEIS-KPDKVAW 319

Query: 345 GTLLSACRVH 354
             +L+   +H
Sbjct: 320 TAMLAGYAMH 329



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 85/163 (52%), Gaps = 2/163 (1%)

Query: 175 LSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ 234
           LS+++L     SS+ + + +H  V KS   +D      L+S Y K G  +DA  LF E+ 
Sbjct: 48  LSTLILHLKSSSSVSICRIIHAHVIKSLDYRDGFIGDQLVSCYLKMGPTKDAYLLFDEMP 107

Query: 235 RKDVVTWNAMISGYAQHGKGEKALRLFDKMK-DEGMKPDSITFVALLLACNHAGLVDLGI 293
           +KD V+WN+++SG A+ G+  + L +F KMK D  +K +  TF++++ AC      D G 
Sbjct: 108 KKDFVSWNSLVSGLAKIGQLGECLSVFCKMKSDSELKLNEFTFLSVISACVSEKACDEG- 166

Query: 294 QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 336
            Y        G+  +      +V++ G+ G +  A  L  +MP
Sbjct: 167 YYVHCCAMKLGLVYEVKVVNALVNMYGKFGFVESAFRLFSEMP 209



 Score = 46.6 bits (109), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 55/253 (21%), Positives = 112/253 (44%), Gaps = 37/253 (14%)

Query: 21  GKLKDAQELFDKIPQPD--VVSYNIMLSCILLNSDDVVAAFDFFQRLPIK----DTASWN 74
           G ++ A  LF ++P+ +  +VS+N +++    N      AF+ F  + +     D A   
Sbjct: 196 GFVESAFRLFSEMPESEKSIVSWNSIVAVCAQNGMPN-EAFNCFDMMRVNGFFPDDA--- 251

Query: 75  TMISGFVQKKNMAKAR-------DLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVA 127
           TM+S     +N    R        +F    ++N    + +++ Y + G+L+ + ++F+  
Sbjct: 252 TMVSLLQACENFPLGRMVEVLHGVIFTCGLDENLTIVTTLLNLYSKLGRLNNSRKVFEEI 311

Query: 128 PVKSVVAWTAMISGYMKFGYVENSWAEDGLKLL-RMMIGLGIRPNASSLSSVLLGCSHLS 186
                VAWTAM++GY   G       ++ ++   R++   G+ P+  + + +L  CSH  
Sbjct: 312 SKPDKVAWTAMLAGYAMHG-----CGKEAIEFFERIVREEGMEPDHVTFTHLLSACSHSG 366

Query: 187 SLQLGKQVHQLVFKSPLCKDTTALTPLISMYC-------KCGDLEDACKLFLEIQ-RKDV 238
            ++ GK   +++       D   + P +  Y        +CG L+DA +L   +    + 
Sbjct: 367 LVKEGKYFFRVM------SDVYKVQPRLDHYSCMVDLLGRCGLLDDAHELIKNMPFEPNS 420

Query: 239 VTWNAMISGYAQH 251
             W A++     H
Sbjct: 421 GVWGALLGACRVH 433


>gi|297743669|emb|CBI36552.3| unnamed protein product [Vitis vinifera]
          Length = 726

 Score =  370 bits (950), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 214/577 (37%), Positives = 324/577 (56%), Gaps = 59/577 (10%)

Query: 22  KLKDAQELFDKIPQPDVVSYNIMLSCILLNS--DDVVAAFDFFQRLPIK-DTASWNTMIS 78
           ++  A+++FD + + D V +N M+S ++ NS  D+ +  F    +  I  D+ +   ++ 
Sbjct: 156 RVAAARKVFDGMLERDTVLWNTMVSGLVKNSCFDEAILIFGDMVKGGIGFDSTTVAAVLP 215

Query: 79  GFVQKKNMAKARDLFLAMPEKNSVSWSAMISG----YIECGQLDKAVELFKVAPVKSVVA 134
           G  + +++A    +     +    S + +I+G    Y +CG+++ A  LF       +V+
Sbjct: 216 GVAELQDLALGMGIQCLAMKVGFHSHAYVITGLACLYSKCGEIETARLLFGQIGQPDLVS 275

Query: 135 WTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQV 194
           + AMISGY       N+  E  ++L + ++  G + N+SS+  ++        L L + +
Sbjct: 276 YNAMISGYTC-----NNETESSVRLFKELLVSGEKVNSSSIVGLIPVFFPFGHLHLTRCI 330

Query: 195 HQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKG 254
           H    KS +  +++  T L ++Y +  ++E A  LF E   K + +WNAMISGYAQ+G  
Sbjct: 331 HGFCTKSGVVSNSSVSTALTTVYSRLNEIESARLLFDESSEKSLASWNAMISGYAQNGLT 390

Query: 255 EKALRLFDKMKDEGMKPD------------------------------------------ 272
           EKA+ LF +M+   ++P+                                          
Sbjct: 391 EKAISLFQEMQKCEVRPNPVTVTSILSACAQLGALSLGKWVHDLINRESFESNIFMLHSR 450

Query: 273 ----SITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEA 328
                +TF+++L AC+HAGLV  G + F SMV+D+G    P+HY CMVDLLGRAG L +A
Sbjct: 451 VSPTGVTFLSVLYACSHAGLVREGDEIFRSMVHDHGFEPLPEHYACMVDLLGRAGNLDKA 510

Query: 329 VDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAA 388
           +D I+KMP +P P ++G LL AC +HK  +LA  A+  LF L+P N  G YV L+NIY+A
Sbjct: 511 LDFIRKMPVEPGPPVWGALLGACMIHKDANLARLASDKLFELDPQNV-GYYVLLSNIYSA 569

Query: 389 MKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKR 448
            + + + A +R  +K   + K PG + IEV   +H F SGD+ HP+  +I+  L++L  +
Sbjct: 570 GQNYPEAASVRGVVKRRKLAKTPGCTLIEVANTLHIFTSGDQSHPQATAIYAMLEKLTGK 629

Query: 449 MKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDC 508
           M+ AG+  +   ALH V EE KE ++  HSEKLAIAFGLI    GT IR+ KNLRVC DC
Sbjct: 630 MREAGFQTETGTALHDVEEEEKELMVKVHSEKLAIAFGLITSEPGTEIRIIKNLRVCLDC 689

Query: 509 HRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           H ATK+IS I +R I+VRD  RFHHFKDG CSCGDYW
Sbjct: 690 HNATKFISKITERVIVVRDANRFHHFKDGICSCGDYW 726



 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 72/273 (26%), Positives = 126/273 (46%), Gaps = 30/273 (10%)

Query: 23  LKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQ 82
           +  A  LF  IP PD+  YN+++    LN+    +A   +  L        +     FV 
Sbjct: 58  IDQASLLFSTIPNPDLFLYNVLIRAFSLNNSPS-SAVSLYTHLRKSTPLEPDNFTYAFVI 116

Query: 83  KKNMAK---------------ARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVA 127
               +                  DLF+          SA+++ Y +  ++  A ++F   
Sbjct: 117 SGASSLGLGLLLHAHSIVAGFGSDLFVG---------SAIVACYFKFSRVAAARKVFDGM 167

Query: 128 PVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSS 187
             +  V W  M+SG +K     NS  ++ + +   M+  GI  +++++++VL G + L  
Sbjct: 168 LERDTVLWNTMVSGLVK-----NSCFDEAILIFGDMVKGGIGFDSTTVAAVLPGVAELQD 222

Query: 188 LQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISG 247
           L LG  +  L  K         +T L  +Y KCG++E A  LF +I + D+V++NAMISG
Sbjct: 223 LALGMGIQCLAMKVGFHSHAYVITGLACLYSKCGEIETARLLFGQIGQPDLVSYNAMISG 282

Query: 248 YAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 280
           Y  + + E ++RLF ++   G K +S + V L+
Sbjct: 283 YTCNNETESSVRLFKELLVSGEKVNSSSIVGLI 315


>gi|224125332|ref|XP_002329779.1| predicted protein [Populus trichocarpa]
 gi|222870841|gb|EEF07972.1| predicted protein [Populus trichocarpa]
          Length = 585

 Score =  370 bits (950), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 206/542 (38%), Positives = 309/542 (57%), Gaps = 15/542 (2%)

Query: 13  LAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTAS 72
           L   A   G +   +++F  +P PD   +  ++     + +  + +  F+ R+ + + + 
Sbjct: 50  LLNLACAAGSISYTRQIFLAVPNPDSFLFTSLIKSTSKSHNFSIYSLYFYSRMVLSNVSP 109

Query: 73  WNTMISGFVQ--------KKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELF 124
            N   +  ++        K        + +     +    +A+++ Y +CG L  A ++F
Sbjct: 110 SNYTFTSVIKSCADLSALKHGRVVHGHVLVHGFGLDVYVQAALVALYGKCGDLINARKVF 169

Query: 125 KVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSH 184
                +S+VAW +MISGY      +N +A++ + L   M   G+ P++++  SVL  C+H
Sbjct: 170 DKIRERSIVAWNSMISGYE-----QNGFAKEAIGLFDRMKETGVEPDSATFVSVLSACAH 224

Query: 185 LSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAM 244
           L +  LG  VH+ +  + L  +    T LI+MY +CG++  A ++F  ++ ++VV W AM
Sbjct: 225 LGAFSLGCWVHEYIVGNGLDLNVVLGTSLINMYIRCGNVSKAREVFDSMKERNVVAWTAM 284

Query: 245 ISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYG 304
           ISGY  +G G +A+ LF +M+  G+ P+SITFVA+L AC HAGLV+ G + F S+  +Y 
Sbjct: 285 ISGYGTNGYGSQAVELFHEMRRNGLFPNSITFVAVLSACAHAGLVNEGRRLFASIREEYH 344

Query: 305 IAAKPDHYTCMVDLLGRAGKLVEAVDLIKK-MPFKPQPAIFGTLLSACRVHKRLDLAEFA 363
           +    +H  C+VD+LGRAG L EA + IK+ +P  P PAI   +L AC++HK  DL    
Sbjct: 345 LVPGVEHNVCLVDMLGRAGLLDEAYNFIKEEIPENPAPAILTAMLGACKMHKNFDLGAQV 404

Query: 364 AMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVH 423
           A +L    P N A  YV L+NIYA   + D V  +R +M    + K  GYS +EV    +
Sbjct: 405 AEHLLAAEPENPAH-YVILSNIYALAGRMDQVEIVRNNMIRKCLKKQVGYSTVEVDQKTY 463

Query: 424 EFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAI 483
            F  GD+ H E  +I+  L EL  +   AGYVP  +  +H + EE +E  L +HSEKLAI
Sbjct: 464 LFSMGDKSHSETNAIYHYLDELMWKCSEAGYVPVSDSVMHELEEEEREYALRYHSEKLAI 523

Query: 484 AFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGD 543
           AFGL+K   GTPIR+ KNLR+C DCH A K+ISAI  REIIVRD  RFHHFK G+CSC D
Sbjct: 524 AFGLLKTSHGTPIRIVKNLRMCEDCHSAIKFISAISSREIIVRDKLRFHHFKVGSCSCLD 583

Query: 544 YW 545
           YW
Sbjct: 584 YW 585



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 64/292 (21%), Positives = 114/292 (39%), Gaps = 64/292 (21%)

Query: 188 LQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISG 247
           L L  QVH  +  S   +  + LT L+++ C  G +    ++FL +   D   + ++I  
Sbjct: 25  LYLLHQVHAHIIVSGYGRSRSLLTKLLNLACAAGSISYTRQIFLAVPNPDSFLFTSLIKS 84

Query: 248 YAQ-HGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG-IQYFDSMVNDYGI 305
            ++ H     +L  + +M    + P + TF +++ +C     +  G + +   +V+ +G+
Sbjct: 85  TSKSHNFSIYSLYFYSRMVLSNVSPSNYTFTSVIKSCADLSALKHGRVVHGHVLVHGFGL 144

Query: 306 AAKPDHYT--CMVDLLGRAGKLVEA----------------------------------V 329
               D Y    +V L G+ G L+ A                                   
Sbjct: 145 ----DVYVQAALVALYGKCGDLINARKVFDKIRERSIVAWNSMISGYEQNGFAKEAIGLF 200

Query: 330 DLIKKMPFKPQPAIFGTLLSACRVHKRLDLA----EFAAMNLFNLN---PANAAGCYVQL 382
           D +K+   +P  A F ++LSAC       L     E+   N  +LN     +    Y++ 
Sbjct: 201 DRMKETGVEPDSATFVSVLSACAHLGAFSLGCWVHEYIVGNGLDLNVVLGTSLINMYIRC 260

Query: 383 ANIYAAMKKWDDVARIRLSMKENNVVK----MPGYSWIEVGT----VVHEFR 426
            N+  A + +D       SMKE NVV     + GY     G+    + HE R
Sbjct: 261 GNVSKAREVFD-------SMKERNVVAWTAMISGYGTNGYGSQAVELFHEMR 305


>gi|6522552|emb|CAB61996.1| putative protein [Arabidopsis thaliana]
          Length = 1229

 Score =  370 bits (950), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 207/488 (42%), Positives = 274/488 (56%), Gaps = 21/488 (4%)

Query: 68  KDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVE----- 122
           +D  SWN+++ G+ Q +    A ++   M E   +S  A     +     +   E     
Sbjct: 204 RDVVSWNSLVVGYAQNQRFDDALEVCREM-ESVKISHDAGTMASLLPAVSNTTTENVMYV 262

Query: 123 ---LFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVL 179
               FK+   KS+V+W  MI  YMK     N+   + ++L   M   G  P+A S++SVL
Sbjct: 263 KDMFFKMGK-KSLVSWNVMIGVYMK-----NAMPVEAVELYSRMEADGFEPDAVSITSVL 316

Query: 180 LGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVV 239
             C   S+L LGK++H  + +  L  +      LI MY KCG LE A  +F  ++ +DVV
Sbjct: 317 PACGDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDVV 376

Query: 240 TWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSM 299
           +W AMIS Y   G+G  A+ LF K++D G+ PDSI FV  L AC+HAGL++ G   F  M
Sbjct: 377 SWTAMISAYGFSGRGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLM 436

Query: 300 VNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDL 359
            + Y I  + +H  CMVDLLGRAGK+ EA   I+ M  +P   ++G LL ACRVH   D+
Sbjct: 437 TDHYKITPRLEHLACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALLGACRVHSDTDI 496

Query: 360 AEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVG 419
              AA  LF L P   +G YV L+NIYA   +W++V  IR  MK   + K PG S +EV 
Sbjct: 497 GLLAADKLFQLAPEQ-SGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVN 555

Query: 420 TVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSE 479
            ++H F  GDR HP+   I+ +L  L K+MK  GYVPD E ALH V EE KE  L  HSE
Sbjct: 556 RIIHTFLVGDRSHPQSDEIYRELDVLVKKMKELGYVPDSESALHDVEEEDKETHLAVHSE 615

Query: 480 KLAIAFGLIKVP-----LGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHF 534
           KLAI F L+            IR+ KNLR+CGDCH A K IS I  REII+RDT RFH F
Sbjct: 616 KLAIVFALMNTKEEEEDSNNTIRITKNLRICGDCHVAAKLISQITSREIIIRDTNRFHVF 675

Query: 535 KDGTCSCG 542
           + G CSC 
Sbjct: 676 RFGVCSCA 683



 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 69/255 (27%), Positives = 122/255 (47%), Gaps = 11/255 (4%)

Query: 100 NSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKL 159
           NS     ++  Y     +  A ++F   P ++V+    MI  Y     V N +  +G+K+
Sbjct: 73  NSSLGVKLMRAYASLKDVASARKVFDEIPERNVIIINVMIRSY-----VNNGFYGEGVKV 127

Query: 160 LRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCK 219
              M G  +RP+  +   VL  CS   ++ +G+++H    K  L         L+SMY K
Sbjct: 128 FGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGK 187

Query: 220 CGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVAL 279
           CG L +A  +  E+ R+DVV+WN+++ GYAQ+ + + AL +  +M+   +  D+ T  +L
Sbjct: 188 CGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASL 247

Query: 280 LLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP--- 336
           L A ++    +  + Y   M    G  +    +  M+ +  +    VEAV+L  +M    
Sbjct: 248 LPAVSNTTTEN--VMYVKDMFFKMGKKSLVS-WNVMIGVYMKNAMPVEAVELYSRMEADG 304

Query: 337 FKPQPAIFGTLLSAC 351
           F+P      ++L AC
Sbjct: 305 FEPDAVSITSVLPAC 319



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 94/414 (22%), Positives = 171/414 (41%), Gaps = 98/414 (23%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCIL-----LNSDDV 55
           M+ +  V+WNS++ G+A Q  +  DA E+  ++    +      ++ +L       +++V
Sbjct: 201 MSRRDVVSWNSLVVGYA-QNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTENV 259

Query: 56  VAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAM---- 107
           +   D F ++  K   SWN MI  +++     +A +L+  M     E ++VS +++    
Sbjct: 260 MYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPAC 319

Query: 108 -----------ISGYIE--------------------CGQLDKAVELFKVAPVKSVVAWT 136
                      I GYIE                    CG L+KA ++F+    + VV+WT
Sbjct: 320 GDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDVVSWT 379

Query: 137 AMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQ 196
           AMIS Y   G+  +    D + L   +   G+ P++ +  + L  CSH   L+ G+   +
Sbjct: 380 AMISAY---GF--SGRGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFK 434

Query: 197 LVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEK 256
           L+       D   +TP +           AC                M+    + GK ++
Sbjct: 435 LM------TDHYKITPRLEHL--------AC----------------MVDLLGRAGKVKE 464

Query: 257 ALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPD-HYTCM 315
           A R    ++D  M+P+   + ALL AC      D+G+   D +   + +A +   +Y  +
Sbjct: 465 AYRF---IQDMSMEPNERVWGALLGACRVHSDTDIGLLAADKL---FQLAPEQSGYYVLL 518

Query: 316 VDLLGRAGKLVEAV---DLIKKMPFKPQPA--------IFGTLLSACRVHKRLD 358
            ++  +AG+  E     +++K    K  P         I  T L   R H + D
Sbjct: 519 SNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVGDRSHPQSD 572



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 70/144 (48%), Gaps = 1/144 (0%)

Query: 192 KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQH 251
           + VH  +    L  +++    L+  Y    D+  A K+F EI  ++V+  N MI  Y  +
Sbjct: 59  RTVHSRIILEDLRCNSSLGVKLMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNN 118

Query: 252 GKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDH 311
           G   + +++F  M    ++PD  TF  +L AC+ +G + +G +   S     G+++    
Sbjct: 119 GFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATK-VGLSSTLFV 177

Query: 312 YTCMVDLLGRAGKLVEAVDLIKKM 335
              +V + G+ G L EA  ++ +M
Sbjct: 178 GNGLVSMYGKCGFLSEARLVLDEM 201


>gi|449480927|ref|XP_004156032.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g49710-like [Cucumis sativus]
          Length = 720

 Score =  370 bits (950), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 210/526 (39%), Positives = 295/526 (56%), Gaps = 56/526 (10%)

Query: 68  KDTASWNTMISGFVQKKNMAKARDLFLAMP------------------------------ 97
           +D  SWN+M+  ++Q +  +KA +L+L M                               
Sbjct: 203 RDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIVDIFTLASVLTAFTNVQDLLGGLQF 262

Query: 98  ---------EKNSVSWSAMISGYIECG--QLDKAVELFKVAPVKSVVAWTAMISGYMKFG 146
                     +NS   S +I  Y +CG   LD   ++F       +V W  MISGY  + 
Sbjct: 263 HAKLIKSGYHQNSHVGSGLIDLYSKCGGCMLD-CRKVFDEISNPDLVLWNTMISGYSLY- 320

Query: 147 YVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKD 206
                 +++ L+  R + G+G RP+  SL  V+  CS++SS   G+QVH L  K  +  +
Sbjct: 321 ---EDLSDEALECFRQLQGVGHRPDDCSLVCVISACSNMSSPSQGRQVHGLALKLDIPSN 377

Query: 207 TTALT-PLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMK 265
             ++   LI+MY KCG+L DA  LF  +   + V++N+MI+GYAQHG G ++L LF +M 
Sbjct: 378 RISVNNALIAMYSKCGNLRDAKTLFDTMPEHNTVSYNSMIAGYAQHGMGFQSLHLFQRML 437

Query: 266 DEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKL 325
           +    P +ITF+++L AC H G V+ G  YF+ M   +GI  +  H++CM+DLLGRAGKL
Sbjct: 438 EMDFTPTNITFISVLAACAHTGRVEDGKIYFNMMKQKFGIEPEAGHFSCMIDLLGRAGKL 497

Query: 326 VEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANI 385
            EA  LI+ +PF P    +  LL ACR+H  ++LA  AA  L  L+P NAA  YV LANI
Sbjct: 498 SEAERLIETIPFDPGFFXWSALLGACRIHGNVELAIKAANRLLQLDPLNAAP-YVMLANI 556

Query: 386 YAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKEL 445
           Y+   +  D A +R  M++  V K PG SWIEV   +H F + D  HP +  I E L+E+
Sbjct: 557 YSDNGRLQDAASVRKLMRDRGVKKKPGCSWIEVNRRIHIFVAEDTFHPMIKKIQEYLEEM 616

Query: 446 EKRMKLAGYVPDLEFALHAVG------EEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVF 499
            +++K  GY P++  A  +VG      +  +E  L  HSEKLA++FGL+    G PI VF
Sbjct: 617 MRKIKKVGYTPEVRSA--SVGGDDRVWQREEELRLGHHSEKLAVSFGLMSTREGEPILVF 674

Query: 500 KNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           KNLR+C DCH A KYIS + KREI VRD+ RFH FKDG CSCG YW
Sbjct: 675 KNLRICVDCHNAIKYISEVVKREITVRDSHRFHCFKDGQCSCGGYW 720



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 84/338 (24%), Positives = 146/338 (43%), Gaps = 80/338 (23%)

Query: 72  SWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELF------- 124
           S+NT+IS + ++  +  A  LF  MP+ +SVS++ +I+ Y   G    A +LF       
Sbjct: 76  SFNTLISAYAKESYVEVAHQLFDEMPQPDSVSYNTLIAAYARRGDTQPAFQLFLEMREAF 135

Query: 125 -----------------KVAPVKSVVAWT-------------AMISGYMKFGYV------ 148
                             V  ++ + A +             A+I+ Y K G++      
Sbjct: 136 LDMDGFTLSGIITACGINVGLIRQLHALSVVTGLDSYVSVGNALITSYSKNGFLKEARRI 195

Query: 149 ---------ENSW---------AEDGLKLLRMMIGLGIRP---NASSLSSVLLGCSHLSS 187
                    E SW           +G K L + + + +R    +  +L+SVL   +++  
Sbjct: 196 FHWLSEDRDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIVDIFTLASVLTAFTNVQD 255

Query: 188 LQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGD-LEDACKLFLEIQRKDVVTWNAMIS 246
           L  G Q H  + KS   +++   + LI +Y KCG  + D  K+F EI   D+V WN MIS
Sbjct: 256 LLGGLQFHAKLIKSGYHQNSHVGSGLIDLYSKCGGCMLDCRKVFDEISNPDLVLWNTMIS 315

Query: 247 GYAQHGK-GEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGI 305
           GY+ +    ++AL  F +++  G +PD  + V ++ AC++      G Q        +G+
Sbjct: 316 GYSLYEDLSDEALECFRQLQGVGHRPDDCSLVCVISACSNMSSPSQGRQV-------HGL 368

Query: 306 AAKPDHYT-------CMVDLLGRAGKLVEAVDLIKKMP 336
           A K D  +        ++ +  + G L +A  L   MP
Sbjct: 369 ALKLDIPSNRISVNNALIAMYSKCGNLRDAKTLFDTMP 406



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 63/275 (22%), Positives = 131/275 (47%), Gaps = 9/275 (3%)

Query: 84  KNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYM 143
           + ++ AR +F    + N  S++ +IS Y +   ++ A +LF   P    V++  +I+ Y 
Sbjct: 57  RRLSAARRVFDHTHDCNVFSFNTLISAYAKESYVEVAHQLFDEMPQPDSVSYNTLIAAYA 116

Query: 144 KFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPL 203
           + G  + ++     +L   M    +  +  +LS ++  C    ++ L +Q+H L   + L
Sbjct: 117 RRGDTQPAF-----QLFLEMREAFLDMDGFTLSGIITACG--INVGLIRQLHALSVVTGL 169

Query: 204 CKDTTALTPLISMYCKCGDLEDACKLFLEI-QRKDVVTWNAMISGYAQHGKGEKALRLFD 262
               +    LI+ Y K G L++A ++F  + + +D V+WN+M+  Y QH +G KAL L+ 
Sbjct: 170 DSYVSVGNALITSYSKNGFLKEARRIFHWLSEDRDEVSWNSMVVAYMQHREGSKALELYL 229

Query: 263 KMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRA 322
           +M   G+  D  T  ++L A  +   +  G+Q+   ++   G        + ++DL  + 
Sbjct: 230 EMTVRGLIVDIFTLASVLTAFTNVQDLLGGLQFHAKLIKS-GYHQNSHVGSGLIDLYSKC 288

Query: 323 GKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRL 357
           G  +     +      P   ++ T++S   +++ L
Sbjct: 289 GGCMLDCRKVFDEISNPDLVLWNTMISGYSLYEDL 323



 Score = 55.5 bits (132), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 57/126 (45%), Gaps = 4/126 (3%)

Query: 174 SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI 233
           S    L  C     L+ GK +H L  KS +   T      + +Y KC  L  A ++F   
Sbjct: 10  SFRQFLKTCIAHRDLRTGKSLHALYIKSFVPTSTYLSNHFLLLYSKCRRLSAARRVFDHT 69

Query: 234 QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGI 293
              +V ++N +IS YA+    E A +LFD+M     +PDS+++  L+ A    G      
Sbjct: 70  HDCNVFSFNTLISAYAKESYVEVAHQLFDEMP----QPDSVSYNTLIAAYARRGDTQPAF 125

Query: 294 QYFDSM 299
           Q F  M
Sbjct: 126 QLFLEM 131



 Score = 45.4 bits (106), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 71/156 (45%), Gaps = 13/156 (8%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQ 63
           + +VN N+++A ++K  G L+DA+ LFD +P+ + VSYN M++    +      +   FQ
Sbjct: 378 RISVN-NALIAMYSKC-GNLRDAKTLFDTMPEHNTVSYNSMIAGYAQHGMG-FQSLHLFQ 434

Query: 64  RLPIKDTASWN-TMISGFVQKKNMAKARD---LFLAMPEKNSVS-----WSAMISGYIEC 114
           R+   D    N T IS      +  +  D    F  M +K  +      +S MI      
Sbjct: 435 RMLEMDFTPTNITFISVLAACAHTGRVEDGKIYFNMMKQKFGIEPEAGHFSCMIDLLGRA 494

Query: 115 GQLDKAVELFKVAPVK-SVVAWTAMISGYMKFGYVE 149
           G+L +A  L +  P       W+A++      G VE
Sbjct: 495 GKLSEAERLIETIPFDPGFFXWSALLGACRIHGNVE 530


>gi|215768832|dbj|BAH01061.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 842

 Score =  370 bits (949), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 215/590 (36%), Positives = 316/590 (53%), Gaps = 55/590 (9%)

Query: 2   NVKTTVNWNSVLAGFAK---------------QRGKLKDA---QELFDKIPQPDVVSYNI 43
           NV T   WN+VL+G ++               ++G   DA     L   +    ++ + +
Sbjct: 256 NVAT---WNTVLSGCSRHGRDREALGVVASMLKQGLRPDATTVSSLLKSVANTGLLRHGM 312

Query: 44  MLSCILLNSD---DV---VAAFDFFQR-------------LPIKDTASWNTMISGFVQKK 84
            + C  L +    DV    A  D + +             L  ++  +WN++++G+    
Sbjct: 313 EIHCFFLRNQLEPDVYTGTALVDMYAKCGRLDCAQKVLDALEHRNLTTWNSLVAGYANAG 372

Query: 85  NMAKARDLFLAMP----EKNSVSWSAMISGYIECGQLDKAVELFK----VAPVKSVVAWT 136
               A +L   M     + +  +W+ +I+GY   GQ  +AV L +         +VV+WT
Sbjct: 373 RFDIALELVELMKKNRLDPDITTWNGLITGYSMNGQSSQAVLLLRQIKAAGVTPNVVSWT 432

Query: 137 AMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQ 196
           ++ISG        N   ED       M   G++P+  ++S +L  C+ L+  + GK++H 
Sbjct: 433 SLISGS-----CHNGEYEDSFYFCHEMQKDGVQPSLVTMSVLLRACAGLALQKKGKELHC 487

Query: 197 LVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEK 256
              +     D    T LI MY K G L  A  +F  IQ+K++V  NAM++G A HG+G +
Sbjct: 488 FALRRAYDCDMVVSTALIDMYSKGGSLVSAKVIFESIQQKNLVLCNAMLTGLAVHGQGRE 547

Query: 257 ALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMV 316
           A+ LF  M + G+KPDSITF ALL AC   GLV  G +YFDSM   YG+    ++Y CMV
Sbjct: 548 AIELFHDMWNSGLKPDSITFTALLTACRSMGLVTEGWEYFDSMETKYGVKPTTENYACMV 607

Query: 317 DLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAA 376
           DLL R G L EA+D I++ P  P  + +G LL+ C +H  L LAE AA NLF L P N+A
Sbjct: 608 DLLARCGYLDEAMDFIERSPIDPGASHWGALLTGCSIHGNLALAEVAARNLFILEPYNSA 667

Query: 377 GCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELV 436
             Y+ + N+Y   + +D+   ++ +MK   V   PG+SWI++   +H F    + HPE  
Sbjct: 668 N-YLLMMNLYEYERMYDEAESLKYAMKARGVDSRPGWSWIQIEQGIHVFEVDGKPHPETA 726

Query: 437 SIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLG-TP 495
            I+E+L  L  ++K AGYVPD     + V EE KE+LLL H+EKLAI +GLI+      P
Sbjct: 727 EIYEELIRLVFQIKKAGYVPDTSCIAYNVQEEEKEKLLLGHTEKLAITYGLIRSDASRAP 786

Query: 496 IRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           +RV KN R+C DCH   K+IS++  R+II+RD  RFHHF DG CSC DYW
Sbjct: 787 VRVMKNTRMCNDCHEVAKHISSLCDRQIILRDAVRFHHFVDGKCSCNDYW 836



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 110/205 (53%), Gaps = 9/205 (4%)

Query: 80  FVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELF----KVAPVKSVVAW 135
           + +  ++A A  +  AM   + V W+A+++     G +D A+EL     +  P  +V  W
Sbjct: 201 YAENADVAAATRVLDAMGAGSVVPWNAVVACCARLGLVDDALELAARMSRSGPEPNVATW 260

Query: 136 TAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVH 195
             ++SG  + G        + L ++  M+  G+RP+A+++SS+L   ++   L+ G ++H
Sbjct: 261 NTVLSGCSRHGR-----DREALGVVASMLKQGLRPDATTVSSLLKSVANTGLLRHGMEIH 315

Query: 196 QLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGE 255
               ++ L  D    T L+ MY KCG L+ A K+   ++ +++ TWN++++GYA  G+ +
Sbjct: 316 CFFLRNQLEPDVYTGTALVDMYAKCGRLDCAQKVLDALEHRNLTTWNSLVAGYANAGRFD 375

Query: 256 KALRLFDKMKDEGMKPDSITFVALL 280
            AL L + MK   + PD  T+  L+
Sbjct: 376 IALELVELMKKNRLDPDITTWNGLI 400



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 58/258 (22%), Positives = 108/258 (41%), Gaps = 47/258 (18%)

Query: 154 EDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTP- 212
           ++ + + R M   G+  +  + + VL  C    +L+ G+ VH    K  L  D   L P 
Sbjct: 138 DEAIAVFREMQARGVPADGYTCARVLHACGRAGALREGRAVHAYALK--LALDAHPLVPG 195

Query: 213 -LISMYCKCGDL-------------------------------EDACKLFLEIQRK---- 236
            L  MY +  D+                               +DA +L   + R     
Sbjct: 196 FLAGMYAENADVAAATRVLDAMGAGSVVPWNAVVACCARLGLVDDALELAARMSRSGPEP 255

Query: 237 DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYF 296
           +V TWN ++SG ++HG+  +AL +   M  +G++PD+ T  +LL +  + GL+  G++  
Sbjct: 256 NVATWNTVLSGCSRHGRDREALGVVASMLKQGLRPDATTVSSLLKSVANTGLLRHGMEIH 315

Query: 297 DSMVNDYGIAAKPDHY--TCMVDLLGRAGKL---VEAVDLIKKMPFKPQPAIFGTLLSAC 351
              + +     +PD Y  T +VD+  + G+L    + +D ++        ++     +A 
Sbjct: 316 CFFLRN---QLEPDVYTGTALVDMYAKCGRLDCAQKVLDALEHRNLTTWNSLVAGYANAG 372

Query: 352 RVHKRLDLAEFAAMNLFN 369
           R    L+L E    N  +
Sbjct: 373 RFDIALELVELMKKNRLD 390



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 57/235 (24%), Positives = 96/235 (40%), Gaps = 45/235 (19%)

Query: 167 GIRP-NASSLSSVLLGCS--------HLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMY 217
           G+ P +A  L S+L  C+        H  + +L  Q+H L  ++ L +D      L+ + 
Sbjct: 38  GVPPYSAGVLVSLLRDCADLHGDDTDHRVARRLAPQLHSLAVRTGLSRDPRVTCALVDLL 97

Query: 218 CKCGDLEDACKLFLEIQR---KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSI 274
            + G      +L  E      KD V WN  ++  A+  + ++A+ +F +M+  G+  D  
Sbjct: 98  ARLGRGPSCARLLHEAAEDGAKDAVLWNKHVAMLAEAEEWDEAIAVFREMQARGVPADGY 157

Query: 275 TFVALLLACNHAGLVDLGI---QYFDSMVND------------YGIAAKPDHYTCMVDLL 319
           T   +L AC  AG +  G     Y   +  D            Y   A     T ++D +
Sbjct: 158 TCARVLHACGRAGALREGRAVHAYALKLALDAHPLVPGFLAGMYAENADVAAATRVLDAM 217

Query: 320 G---------------RAGKLVEAVDLIKKMPFK-PQP--AIFGTLLSACRVHKR 356
           G               R G + +A++L  +M    P+P  A + T+LS C  H R
Sbjct: 218 GAGSVVPWNAVVACCARLGLVDDALELAARMSRSGPEPNVATWNTVLSGCSRHGR 272


>gi|297804280|ref|XP_002870024.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315860|gb|EFH46283.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 871

 Score =  370 bits (949), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 201/550 (36%), Positives = 316/550 (57%), Gaps = 40/550 (7%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQ----PDVVSYNIMLSCILLNSDDVV 56
           M+ ++ V++ S++AG+A++ G   +A +LF+++ +    PDV +   +L+C   N     
Sbjct: 357 MSGRSVVSYTSMIAGYARE-GLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARNR---- 411

Query: 57  AAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQ 116
              D  +R            +  ++++ +M    D+F++         +A++  Y +CG 
Sbjct: 412 -LLDEGKR------------VHEWIKENDMG--FDIFVS---------NALMDMYAKCGS 447

Query: 117 LDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMM-IGLGIRPNASSL 175
           + +A  +F    VK +++W  +I GY K     N +A + L L  ++ +     P+  ++
Sbjct: 448 MREAELVFSEMRVKDIISWNTVIGGYSK-----NCYANEALSLFNLLLVEKRFSPDERTV 502

Query: 176 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR 235
           + VL  C+ LS+   G+++H  + ++    D      L+ MY KCG L  A  LF +I  
Sbjct: 503 ACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLARLLFDDITS 562

Query: 236 KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQY 295
           KD+V+W  MI+GY  HG G++A+ LF++M+  G++PD I+FV+LL AC+H+GLVD G ++
Sbjct: 563 KDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEPDEISFVSLLYACSHSGLVDEGWRF 622

Query: 296 FDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHK 355
           F+ M ++  I    +HY C+VD+L R G L +A   I+ MP  P   I+G LL  CR+H 
Sbjct: 623 FNIMRHECKIEPTVEHYACIVDMLARTGNLSKAYRFIENMPIPPDATIWGALLCGCRIHH 682

Query: 356 RLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSW 415
            + LAE  A  +F L P N  G YV +ANIYA  +KW++V R+R  + +  + K PG SW
Sbjct: 683 DVKLAERVAEKVFELEPEN-TGYYVLMANIYAEAEKWEEVKRLRKRIGQRGLRKNPGCSW 741

Query: 416 IEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLL 475
           IE+   V+ F +GD  +PE   I   L+ +  RM   GY P  ++AL    E  KE+ L 
Sbjct: 742 IEIKGRVNIFVAGDSSNPETEKIEAFLRGVRARMIEEGYSPLTKYALIDAEEMEKEEALC 801

Query: 476 FHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFK 535
            HSEKLA+A G+I    G  IRV KNLRVCGDCH   K++S + +REI++RD+ RFH FK
Sbjct: 802 GHSEKLAMALGIISSGHGKIIRVTKNLRVCGDCHEMAKFMSKLTRREIVLRDSNRFHQFK 861

Query: 536 DGTCSCGDYW 545
           DG CSC  +W
Sbjct: 862 DGHCSCRGFW 871



 Score =  138 bits (347), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 100/376 (26%), Positives = 187/376 (49%), Gaps = 30/376 (7%)

Query: 8   NWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPI 67
           N  S LA      G LK+A  +FD++     + +NI+++  L  S D   +   F+++  
Sbjct: 130 NLGSKLALMYTNCGDLKEASRVFDQVKIEKALFWNILMN-ELAKSGDFSGSIGLFKKMMS 188

Query: 68  K----DTASWNTMISGFVQKKNMAKARDLF-----LAMPEKNSVSWSAMISGYIECGQLD 118
                D+ +++ +   F   +++     L          E+NSV  +++++ Y++  ++D
Sbjct: 189 SGVEMDSYTFSCVSKSFSSLRSVNGGEQLHGYILKSGFGERNSVG-NSLVAFYLKNHRVD 247

Query: 119 KAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSV 178
            A ++F     + V++W ++I+GY     V N  AE GL +   M+  GI  + +++ SV
Sbjct: 248 SARKVFDEMTERDVISWNSIINGY-----VSNGLAEKGLSVFVQMLFSGIEIDLATIVSV 302

Query: 179 LLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDV 238
             GC+    + LG+ VH    K+   ++      L+ MY KCGDL+ A  +F E+  + V
Sbjct: 303 FAGCADSRLISLGRAVHCFGVKACFSREDRFCNTLLDMYSKCGDLDSAKVVFREMSGRSV 362

Query: 239 VTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDS 298
           V++ +MI+GYA+ G   +A++LF++M++EG+ PD  T  A+L  C    L+D G +  + 
Sbjct: 363 VSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARNRLLDEGKRVHEW 422

Query: 299 M-VNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK---PQPAIFGTLLSACRVH 354
           +  ND G      +   ++D+  + G + EA  +  +M  K       + G     C  +
Sbjct: 423 IKENDMGFDIFVSN--ALMDMYAKCGSMREAELVFSEMRVKDIISWNTVIGGYSKNCYAN 480

Query: 355 KRLDLAEFAAMNLFNL 370
           +        A++LFNL
Sbjct: 481 E--------ALSLFNL 488



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 70/130 (53%), Gaps = 2/130 (1%)

Query: 147 YVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKD 206
           + E+   ++ +KLL +     I P   +L SVL  C+   SL+ GK+V   +  +    D
Sbjct: 71  FCESGNLKNAVKLLHVSGKWDIDPR--TLCSVLQLCADSKSLKDGKEVDNFIRGNGFVLD 128

Query: 207 TTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKD 266
           +   + L  MY  CGDL++A ++F +++ +  + WN +++  A+ G    ++ LF KM  
Sbjct: 129 SNLGSKLALMYTNCGDLKEASRVFDQVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMS 188

Query: 267 EGMKPDSITF 276
            G++ DS TF
Sbjct: 189 SGVEMDSYTF 198


>gi|115455891|ref|NP_001051546.1| Os03g0795200 [Oryza sativa Japonica Group]
 gi|50400032|gb|AAT76420.1| putative PPR repeat containing protein [Oryza sativa Japonica
           Group]
 gi|108711537|gb|ABF99332.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113550017|dbj|BAF13460.1| Os03g0795200 [Oryza sativa Japonica Group]
          Length = 611

 Score =  370 bits (949), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 205/542 (37%), Positives = 305/542 (56%), Gaps = 20/542 (3%)

Query: 17  AKQRGKLKDAQELFDKIPQP-DVVSYNIMLSCILLNSDDVVAAFD---FFQRL----PIK 68
           A+    L  A+++FD+IP P DVV YN +L            A +    F R+       
Sbjct: 77  AEAPAHLAYARQVFDRIPHPGDVVWYNTLLRGYARGGGGGGGAEEAARVFVRMMEEGVAP 136

Query: 69  DTASWNTMISGFVQKKNMAKARDL----FLAMPEKNSVSWSAMISGYIECGQLDKAVELF 124
           DT ++ +++      +   + R        A   ++      +I+ Y ECG +  A  +F
Sbjct: 137 DTYTFVSLLKACASARAGEEGRQAHGVAVKAGAAEHEYVAPTLINMYAECGDVRAARVMF 196

Query: 125 KVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSH 184
                + VV++ AMI+       V +S   + L L R M   G++P + +L SVL  C+ 
Sbjct: 197 DRMDGECVVSYNAMITAS-----VRSSLPGEALVLFREMQAKGLKPTSVTLISVLSACAL 251

Query: 185 LSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAM 244
           L +L+LG+ +H  + K  L       T LI MY KCG LEDA  +F +++ +D   W+ M
Sbjct: 252 LGALELGRWIHDYIRKMRLDSLVKVNTALIDMYAKCGSLEDAIGVFQDMESRDKQAWSVM 311

Query: 245 ISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYG 304
           +  YA HG G +A+ +F++MK +GMKPD +TF+ +L AC+H+G+V  G+QYFDSM  +YG
Sbjct: 312 MVAYANHGYGREAISMFEEMKKQGMKPDDVTFLGVLYACSHSGMVSEGLQYFDSM-REYG 370

Query: 305 IAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAA 364
           I +   HY C+ DLL R+G+L  A   I ++P KP   ++ TLLSAC  H  +D+ +   
Sbjct: 371 IVSGIKHYGCVTDLLARSGQLERAYKFIDELPIKPTAILWRTLLSACAGHGDVDMGKRVF 430

Query: 365 MNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHE 424
             +  L+ ++  G YV  +N+ A   +W+++  +R  M E  VVK+PG S IE+  +VHE
Sbjct: 431 ERILELDDSH-GGDYVIFSNLCANTGRWEEMNMVRKLMSEKGVVKVPGCSSIEIDNMVHE 489

Query: 425 FRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHA-VGEEVKEQLLLFHSEKLAI 483
           F +GD  HP        + E+ +++KL GYVP+     H  +GEE K   L +HSEKLAI
Sbjct: 490 FFAGDGSHPHSQEARRMVDEVIEQLKLVGYVPNTSHVFHVEMGEEEKATSLRYHSEKLAI 549

Query: 484 AFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGD 543
           +FGL+    GT +R+ KNLRVC DCH   K +S +  R II+RD  RFHHF+DG CSCGD
Sbjct: 550 SFGLLNTAPGTTLRIVKNLRVCPDCHSMAKLVSMVFNRRIILRDLNRFHHFEDGVCSCGD 609

Query: 544 YW 545
           YW
Sbjct: 610 YW 611


>gi|296085848|emb|CBI31172.3| unnamed protein product [Vitis vinifera]
          Length = 644

 Score =  370 bits (949), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 189/460 (41%), Positives = 274/460 (59%), Gaps = 42/460 (9%)

Query: 122 ELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLG 181
           ++F++ P + +V+W  +ISG       +N   ED L ++R M    +RP++ +LSSVL  
Sbjct: 191 KVFEMMPKRDIVSWNTVISGN-----AQNGMHEDALMMVREMGNADLRPDSFTLSSVLPI 245

Query: 182 CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTW 241
            +   +L  GK++H    ++    D    + LI MY KC  ++D+C++F  + + D ++W
Sbjct: 246 FAEYVNLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISW 305

Query: 242 NAMISGYAQHGKGEKALRLFDKM------------------------------------K 265
           N++I+G  Q+G  ++ L+ F +M                                    +
Sbjct: 306 NSIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIR 365

Query: 266 DEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKL 325
            EG+KP+ + F+A+L AC+HAGLVD   +YF+SM  DY I    +HY  + DLLGR G+L
Sbjct: 366 MEGVKPNYVAFMAVLTACSHAGLVDEAWKYFNSMTQDYRIIPGLEHYAAVADLLGRVGRL 425

Query: 326 VEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANI 385
            EA + I  M  +P  +++ TLL+ACRVHK ++LAE  +  LF ++P N  G YV L+NI
Sbjct: 426 EEAYEFISDMHIEPTGSVWSTLLAACRVHKNIELAEKVSKKLFTVDPQNI-GAYVLLSNI 484

Query: 386 YAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKEL 445
           Y+A  +W D  ++R++M++  + K P  SWIE+   VH F +GD+ HP    I+E LK L
Sbjct: 485 YSAAGRWKDARKLRIAMRDKGMKKKPACSWIEIKNKVHAFVAGDKSHPYYDRINEALKVL 544

Query: 446 EKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVC 505
            ++M+  GYV D    LH V EE K  LL  HSE+LAI FG+I  P GT IRV KNLRVC
Sbjct: 545 LEQMEREGYVLDTTEVLHDVEEEQKRYLLCSHSERLAITFGIISTPAGTTIRVTKNLRVC 604

Query: 506 GDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
            DCH ATK+IS I  REI+VRD +RFHHFKDG CSCGD+W
Sbjct: 605 VDCHTATKFISKIVGREIVVRDNSRFHHFKDGKCSCGDFW 644



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 59/233 (25%), Positives = 104/233 (44%), Gaps = 40/233 (17%)

Query: 81  VQKKNMAK---ARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVK-SVVAWT 136
           V+ K+ AK   A+ L  ++P  + +S   ++S Y     L  ++ +F   P   + +AW 
Sbjct: 18  VKSKSQAKQLHAQILRTSLPSPSLLS--TILSIYSNLNLLHDSLLIFNSLPSPPTTLAWK 75

Query: 137 AMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQ 196
           ++I  Y   G   +S     L     M+  G  P+ +   SVL  C+ +  L+ G+ VH 
Sbjct: 76  SIIRCYTSHGLFLHS-----LSFFIQMLASGKYPDHNVFPSVLKSCTLMKDLRFGESVHG 130

Query: 197 LVFKSPLCKDTTALTPLISMYCKCGDLEDAC----------------------------- 227
            + +  +  D      L++MY K   LE+                               
Sbjct: 131 CIIRLGMGFDLYTCNALMNMYSKFWSLEEVNTYKKVFDEGKTSDVYSKKEKESYYLGSLR 190

Query: 228 KLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 280
           K+F  + ++D+V+WN +ISG AQ+G  E AL +  +M +  ++PDS T  ++L
Sbjct: 191 KVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVL 243



 Score = 41.6 bits (96), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 27/109 (24%), Positives = 50/109 (45%), Gaps = 2/109 (1%)

Query: 177 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK 236
           ++L   S + S    KQ+H  + ++ L    + L+ ++S+Y     L D+  +F  +   
Sbjct: 10  TLLQNPSSVKSKSQAKQLHAQILRTSL-PSPSLLSTILSIYSNLNLLHDSLLIFNSLPSP 68

Query: 237 -DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 284
              + W ++I  Y  HG    +L  F +M   G  PD   F ++L +C 
Sbjct: 69  PTTLAWKSIIRCYTSHGLFLHSLSFFIQMLASGKYPDHNVFPSVLKSCT 117


>gi|147833186|emb|CAN68635.1| hypothetical protein VITISV_030802 [Vitis vinifera]
          Length = 767

 Score =  370 bits (949), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 214/563 (38%), Positives = 325/563 (57%), Gaps = 47/563 (8%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQ 63
           +  V+WNS+++GF    G+ + A   F+     D+VS     S +  N   V+A      
Sbjct: 231 RDVVSWNSLISGFXLN-GEAERALRTFE-----DMVSEGT--SAVEPNRVTVIALLKSCA 282

Query: 64  RLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVEL 123
            L   +T+SW       V +   ++   L +A   K+ V  +A++  +  CG L  A E+
Sbjct: 283 ELGCVETSSW-------VHEYISSRHSSLLVA---KDVVVLTALLDMHARCGNLALAREI 332

Query: 124 FKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMM------IGLGIRPNASSLSS 177
           F     K+VV W+AMI+GY      + S  E+ L+L R M      +G+ ++PNA +L S
Sbjct: 333 FDGVEGKNVVCWSAMIAGYE-----QGSCPEEALRLFRQMLMEGNMVGVEVKPNAVTLVS 387

Query: 178 VLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR-- 235
           V+  CS L + +    +H+    + L +D    + LI M  KCGD+E   ++F E+    
Sbjct: 388 VIAACSRLGASRSASMIHKYAVATGLDQDARIASALIDMCAKCGDIEHGRQVFSEMDEST 447

Query: 236 KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQY 295
           + VV+W++MI     HG+G++AL LF +M+  G +P+ IT++++L AC+HAGLV+ G   
Sbjct: 448 RTVVSWSSMIGAEGIHGEGKRALELFSEMRTGGYEPNEITYISVLSACSHAGLVEQGKSC 507

Query: 296 FDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHK 355
           F+SM  DYG++    HY C+VDLLGRAG L EA ++I  MP K   A++G+LL+AC +H 
Sbjct: 508 FNSMEKDYGMSPTGKHYACLVDLLGRAGHLDEAHNVILNMPIKADLALWGSLLAACHLHG 567

Query: 356 RLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSW 415
              L E     + +L+ +N+ G +V LAN+Y    +WDDV R+R+ ++ + + K+PG S+
Sbjct: 568 NCKLGEIVEKKILSLD-SNSVGHHVLLANMYEDAGRWDDVVRMRVELRRSGLRKIPGQSF 626

Query: 416 IEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRM-KLAGYVPDLEFALHAVGEEVKEQLL 474
           IE+G  V+ F + DR HPE   I+++L  L++R+ K A YV   E  L+    ++   + 
Sbjct: 627 IEIGNEVYSFMAEDRSHPESEMIYKELDGLDERVRKAAKYVT--ETGLNVEDGDIAGLIX 684

Query: 475 L--FHSEKLAIAFGLIKVP----------LGTPIRVFKNLRVCGDCHRATKYISAIEKRE 522
              +HSE+LAIAFGLI +             TPIR+ KNLRVC DCH  TK +S +  RE
Sbjct: 685 RCKYHSERLAIAFGLIMIDRHSTCSCSLRTATPIRITKNLRVCRDCHAYTKLVSKVIDRE 744

Query: 523 IIVRDTTRFHHFKDGTCSCGDYW 545
           +IVRD  RFHHF+DG CSCGDYW
Sbjct: 745 LIVRDAHRFHHFRDGFCSCGDYW 767



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 96/351 (27%), Positives = 162/351 (46%), Gaps = 43/351 (12%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQ 63
           K T +WNS++A  A Q    + A   F ++    V S N     +L       A     +
Sbjct: 16  KDTFHWNSLIAKNATQ--NPQTALTFFTRMQAHAVPSNNFTFPALL------KACAALRR 67

Query: 64  RLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVEL 123
            LP     ++ T          +  A D F A         +A++  Y +CG    A ++
Sbjct: 68  LLPTLQVHAYLT---------RLGLAADRFSA---------AALVDAYGKCGHAYYAAQV 109

Query: 124 FKVAPVKSV--VAWTAMISGYMKFGYVENSWAEDG-LKLLR-----MMIGLGIRPNASSL 175
           F   P  SV  V+WTA+IS Y   G V+ ++   G ++ +R        G+ +    + +
Sbjct: 110 FDEMPEGSVDVVSWTALISAYSSNGCVDEAFXAFGRMRWMRGWDGSECCGVDVVSLGALV 169

Query: 176 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF--LEI 233
           S+  +GC   + L+ G  VH LV K      T     ++ MY  C D+  A ++F  + I
Sbjct: 170 SACAVGCGS-NCLRRGSAVHGLVVKYGFGVSTHLGNSMVHMYSACKDVGGAWRVFNGIPI 228

Query: 234 QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEG---MKPDSITFVALLLACNHAGLVD 290
           +++DVV+WN++ISG+  +G+ E+ALR F+ M  EG   ++P+ +T +ALL +C   G V+
Sbjct: 229 EQRDVVSWNSLISGFXLNGEAERALRTFEDMVSEGTSAVEPNRVTVIALLKSCAELGCVE 288

Query: 291 LGI---QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 338
                 +Y  S  +   +A      T ++D+  R G L  A ++   +  K
Sbjct: 289 TSSWVHEYISSRHSSLLVAKDVVVLTALLDMHARCGNLALAREIFDGVEGK 339



 Score = 41.6 bits (96), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 47/104 (45%), Gaps = 2/104 (1%)

Query: 233 IQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 292
           I  KD   WN++I+  A     + AL  F +M+   +  ++ TF ALL AC     +   
Sbjct: 13  ISHKDTFHWNSLIAKNATQNP-QTALTFFTRMQAHAVPSNNFTFPALLKACAALRRLLPT 71

Query: 293 IQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 336
           +Q   + +   G+AA       +VD  G+ G    A  +  +MP
Sbjct: 72  LQ-VHAYLTRLGLAADRFSAAALVDAYGKCGHAYYAAQVFDEMP 114


>gi|188509949|gb|ACD56635.1| putative pentatricopeptide repeat protein [Gossypium raimondii]
          Length = 667

 Score =  370 bits (949), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 193/547 (35%), Positives = 308/547 (56%), Gaps = 35/547 (6%)

Query: 7   VNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLN--SDDVVAAFDFFQR 64
           +N+++ L     + G L  A  +F+K+ + +VVS+  M++    +  SD  +      ++
Sbjct: 148 INFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGWSDGAIILLQQMEK 207

Query: 65  LPIK-DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVS----WSAMISGYIECGQLDK 119
             +K D  +  +++    +  ++   +D+   +   N  S     +A++  Y +CG ++ 
Sbjct: 208 EGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMASNLFVCNALMDMYAKCGSMEG 267

Query: 120 AVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVL 179
           A  +F    VK +++W  M+                            ++P++ +++ +L
Sbjct: 268 ANSVFSTMVVKDIISWNTMVGE--------------------------LKPDSRTMACIL 301

Query: 180 LGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVV 239
             C+ LS+L+ GK++H  + ++    D      L+ +Y KCG L  A  LF  I  KD+V
Sbjct: 302 PACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLV 361

Query: 240 TWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSM 299
           +W  MI+GY  HG G +A+  F++M+D G++PD ++F+++L AC+H+GL++ G ++F  M
Sbjct: 362 SWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIM 421

Query: 300 VNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDL 359
            ND+ I  K +HY CMVDLL R G L +A   I+ +P  P   I+G LL  CR++  ++L
Sbjct: 422 KNDFNIEPKLEHYACMVDLLSRTGNLSKAYKFIETLPIAPDATIWGALLCGCRIYHDIEL 481

Query: 360 AEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVG 419
           AE  A  +F L P N  G YV LANIYA  +KW++V R+R  + +  + K PG SWIE+ 
Sbjct: 482 AEKVAERVFELEPEN-TGYYVLLANIYAEAEKWEEVKRMREKIGKKGLRKNPGCSWIEIK 540

Query: 420 TVVHEFRSGDR-VHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHS 478
             V+ F SG+   HP    I   LK++ ++MK  GY P  ++AL    E  KE  L  HS
Sbjct: 541 GRVNLFVSGNNSSHPHSKKIESLLKKMRRKMKEEGYFPKTKYALINADEMQKEMALCGHS 600

Query: 479 EKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGT 538
           EKLA+AFGL+ +P    IRV KNLRVCGDCH   K++S   +REI++RD+ RFHHFKDG 
Sbjct: 601 EKLAMAFGLLTLPPRKTIRVTKNLRVCGDCHEMAKFMSKETRREIVLRDSNRFHHFKDGY 660

Query: 539 CSCGDYW 545
           CSC  +W
Sbjct: 661 CSCRGFW 667



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 87/309 (28%), Positives = 148/309 (47%), Gaps = 39/309 (12%)

Query: 76  MISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKS---- 131
           ++S +    ++ + R +F  M +KN   W+ M+S Y + G   +++ LFK+   K     
Sbjct: 2   LVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGK 61

Query: 132 ----------------VVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSL 175
                           V++W +MISGY     V N   E GL + + M+ LGI  + +++
Sbjct: 62  RSESASELFDKLCDRDVISWNSMISGY-----VSNGLTERGLGIYKQMMYLGIDVDLATI 116

Query: 176 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR 235
            SVL+GC+   +L LGK VH L  KS   +       L+ MY KCGDL+ A ++F ++  
Sbjct: 117 ISVLVGCAKSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGE 176

Query: 236 KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQY 295
           ++VV+W +MI+GY + G  + A+ L  +M+ EG+K D +   ++L AC  +G +D G   
Sbjct: 177 RNVVSWTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDV 236

Query: 296 FDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-------------PFKPQPA 342
            D  +    +A+       ++D+  + G +  A  +   M               KP   
Sbjct: 237 HD-YIKANNMASNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMVGELKPDSR 295

Query: 343 IFGTLLSAC 351
               +L AC
Sbjct: 296 TMACILPAC 304



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 95/384 (24%), Positives = 164/384 (42%), Gaps = 85/384 (22%)

Query: 13  LAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLS------------CIL-------LNSD 53
           L  F    G LK+ + +FD + + +V  +N M+S            C+        +   
Sbjct: 2   LVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGK 61

Query: 54  DVVAAFDFFQRLPIKDTASWNTMISGFVQ-----------KKNMAKARDLFLAMP----- 97
              +A + F +L  +D  SWN+MISG+V            K+ M    D+ LA       
Sbjct: 62  RSESASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLV 121

Query: 98  -----------------------EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVA 134
                                  E+     + ++  Y +CG LD A+ +F+    ++VV+
Sbjct: 122 GCAKSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVS 181

Query: 135 WTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQV 194
           WT+MI+GY + G     W++  + LL+ M   G++ +  +++S+L  C+   SL  GK V
Sbjct: 182 WTSMIAGYTRDG-----WSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDV 236

Query: 195 HQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKG 254
           H  +  + +  +      L+ MY KCG +E A  +F  +  KD+++WN M+        G
Sbjct: 237 HDYIKANNMASNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMV--------G 288

Query: 255 EKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTC 314
           E             +KPDS T   +L AC     ++ G +    ++ + G ++       
Sbjct: 289 E-------------LKPDSRTMACILPACASLSALERGKEIHGYILRN-GYSSDRHVANA 334

Query: 315 MVDLLGRAGKLVEAVDLIKKMPFK 338
           +VDL  + G L  A  L   +P K
Sbjct: 335 LVDLYVKCGVLGLARLLFDMIPSK 358


>gi|48475086|gb|AAT44155.1| hypothetical protein, contains pentrtricopeptide (PPR) repeat
           [Oryza sativa Japonica Group]
 gi|125568883|gb|EAZ10398.1| hypothetical protein OsJ_00231 [Oryza sativa Japonica Group]
          Length = 836

 Score =  370 bits (949), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 215/590 (36%), Positives = 316/590 (53%), Gaps = 55/590 (9%)

Query: 2   NVKTTVNWNSVLAGFAK---------------QRGKLKDA---QELFDKIPQPDVVSYNI 43
           NV T   WN+VL+G ++               ++G   DA     L   +    ++ + +
Sbjct: 256 NVAT---WNTVLSGCSRHGRDREALGVVASMLKQGLRPDATTVSSLLKSVANTGLLRHGM 312

Query: 44  MLSCILLNSD---DV---VAAFDFFQR-------------LPIKDTASWNTMISGFVQKK 84
            + C  L +    DV    A  D + +             L  ++  +WN++++G+    
Sbjct: 313 EIHCFFLRNQLEPDVYTGTALVDMYAKCGRLDCAQKVLDALEHRNLTTWNSLVAGYANAG 372

Query: 85  NMAKARDLFLAMP----EKNSVSWSAMISGYIECGQLDKAVELFK----VAPVKSVVAWT 136
               A +L   M     + +  +W+ +I+GY   GQ  +AV L +         +VV+WT
Sbjct: 373 RFDIALELVELMKKNRLDPDITTWNGLITGYSMNGQSSQAVLLLRQIKAAGVTPNVVSWT 432

Query: 137 AMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQ 196
           ++ISG        N   ED       M   G++P+  ++S +L  C+ L+  + GK++H 
Sbjct: 433 SLISGS-----CHNGEYEDSFYFCHEMQKDGVQPSLVTMSVLLRACAGLALQKKGKELHC 487

Query: 197 LVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEK 256
              +     D    T LI MY K G L  A  +F  IQ+K++V  NAM++G A HG+G +
Sbjct: 488 FALRRAYDCDMVVSTALIDMYSKGGSLVSAKVIFESIQQKNLVLCNAMLTGLAVHGQGRE 547

Query: 257 ALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMV 316
           A+ LF  M + G+KPDSITF ALL AC   GLV  G +YFDSM   YG+    ++Y CMV
Sbjct: 548 AIELFHDMWNSGLKPDSITFTALLTACRSMGLVTEGWEYFDSMETKYGVKPTTENYACMV 607

Query: 317 DLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAA 376
           DLL R G L EA+D I++ P  P  + +G LL+ C +H  L LAE AA NLF L P N+A
Sbjct: 608 DLLARCGYLDEAMDFIERSPIDPGASHWGALLTGCSIHGNLALAEVAARNLFILEPYNSA 667

Query: 377 GCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELV 436
             Y+ + N+Y   + +D+   ++ +MK   V   PG+SWI++   +H F    + HPE  
Sbjct: 668 N-YLLMMNLYEYERMYDEAESLKYAMKARGVDSRPGWSWIQIEQGIHVFEVDGKPHPETA 726

Query: 437 SIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLG-TP 495
            I+E+L  L  ++K AGYVPD     + V EE KE+LLL H+EKLAI +GLI+      P
Sbjct: 727 EIYEELIRLVFQIKKAGYVPDTSCIAYNVQEEEKEKLLLGHTEKLAITYGLIRSDASRAP 786

Query: 496 IRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           +RV KN R+C DCH   K+IS++  R+II+RD  RFHHF DG CSC DYW
Sbjct: 787 VRVMKNTRMCNDCHEVAKHISSLCDRQIILRDAVRFHHFVDGKCSCNDYW 836



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 110/205 (53%), Gaps = 9/205 (4%)

Query: 80  FVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELF----KVAPVKSVVAW 135
           + +  ++A A  +  AM   + V W+A+++     G +D A+EL     +  P  +V  W
Sbjct: 201 YAENADVAAATRVLDAMGAGSVVPWNAVVACCARLGLVDDALELAARMSRSGPEPNVATW 260

Query: 136 TAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVH 195
             ++SG  + G        + L ++  M+  G+RP+A+++SS+L   ++   L+ G ++H
Sbjct: 261 NTVLSGCSRHGR-----DREALGVVASMLKQGLRPDATTVSSLLKSVANTGLLRHGMEIH 315

Query: 196 QLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGE 255
               ++ L  D    T L+ MY KCG L+ A K+   ++ +++ TWN++++GYA  G+ +
Sbjct: 316 CFFLRNQLEPDVYTGTALVDMYAKCGRLDCAQKVLDALEHRNLTTWNSLVAGYANAGRFD 375

Query: 256 KALRLFDKMKDEGMKPDSITFVALL 280
            AL L + MK   + PD  T+  L+
Sbjct: 376 IALELVELMKKNRLDPDITTWNGLI 400



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 60/261 (22%), Positives = 110/261 (42%), Gaps = 49/261 (18%)

Query: 154 EDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTP- 212
           ++ + + R M   G+  +  + + VL  C    +L+ G+ VH    K  L  D   L P 
Sbjct: 138 DEAIAVFREMQARGVPADGYTCARVLHACGRAGALREGRAVHAYALK--LALDAHPLVPG 195

Query: 213 -LISMYCKCGDL-------------------------------EDACKLFLEIQRK---- 236
            L  MY +  D+                               +DA +L   + R     
Sbjct: 196 FLAGMYAENADVAAATRVLDAMGAGSVVPWNAVVACCARLGLVDDALELAARMSRSGPEP 255

Query: 237 DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYF 296
           +V TWN ++SG ++HG+  +AL +   M  +G++PD+ T  +LL +  + GL+  G++  
Sbjct: 256 NVATWNTVLSGCSRHGRDREALGVVASMLKQGLRPDATTVSSLLKSVANTGLLRHGMEIH 315

Query: 297 DSMVNDYGIAAKPDHY--TCMVDLLGRAGKL---VEAVDLIKKMPFKPQPAIFGTLLSAC 351
              + +     +PD Y  T +VD+  + G+L    + +D ++        ++     +A 
Sbjct: 316 CFFLRN---QLEPDVYTGTALVDMYAKCGRLDCAQKVLDALEHRNLTTWNSLVAGYANAG 372

Query: 352 RVHKRLDLAEFAAMNLFNLNP 372
           R    L+L E    N   L+P
Sbjct: 373 RFDIALELVELMKKN--RLDP 391



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 56/235 (23%), Positives = 96/235 (40%), Gaps = 45/235 (19%)

Query: 167 GIRP-NASSLSSVLLGCS--------HLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMY 217
           G+ P +A  L S+L  C+        H  + +L  Q+H L  ++ L +D      L+ + 
Sbjct: 38  GVPPYSAGVLVSLLRDCADLHGDDTDHRVARRLAPQLHSLAVRTGLSRDPRVTCALVDLL 97

Query: 218 CKCGDLEDACKLFLEIQR---KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSI 274
            + G      +L  E      KD V WN  ++  A+  + ++A+ +F +M+  G+  D  
Sbjct: 98  ARLGRGPSCARLLHEAAEDGAKDAVLWNKHVAMLAEAEEWDEAIAVFREMQARGVPADGY 157

Query: 275 TFVALLLACNHAGLVDLGIQY--------FDS-------MVNDYGIAAKPDHYTCMVDLL 319
           T   +L AC  AG +  G            D+       +   Y   A     T ++D +
Sbjct: 158 TCARVLHACGRAGALREGRAVHAYALKLALDAHPLVPGFLAGMYAENADVAAATRVLDAM 217

Query: 320 G---------------RAGKLVEAVDLIKKMPFK-PQP--AIFGTLLSACRVHKR 356
           G               R G + +A++L  +M    P+P  A + T+LS C  H R
Sbjct: 218 GAGSVVPWNAVVACCARLGLVDDALELAARMSRSGPEPNVATWNTVLSGCSRHGR 272


>gi|326526571|dbj|BAJ97302.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 851

 Score =  370 bits (949), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 211/560 (37%), Positives = 315/560 (56%), Gaps = 61/560 (10%)

Query: 31  DKIPQPDVVSYNIMLSC-ILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKA 89
           DK+P   V +Y     C  LL++D V      F  +  K  +SWNT+IS   Q+ N A A
Sbjct: 308 DKVPNALVAAYG---RCGRLLHADRV------FTDIRRKTVSSWNTLISAHAQQ-NTAAA 357

Query: 90  RDLFLAMP----------------------------------------EKNSVSWSAMIS 109
            +LF+ M                                         E+++V  ++++S
Sbjct: 358 IELFIQMTNACGLKPDGFSIGSLLMACADPKHLLHVKATHGFILRNGLERDTVIRASLLS 417

Query: 110 GYIECGQLDK-AVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGL-G 167
            YI C + +  A  LF     K  V W AMISGY      +N    + L+L R M  + G
Sbjct: 418 AYIRCSRTEYLARVLFDAMEEKGEVLWIAMISGY-----SQNGLPGESLQLFREMQSVEG 472

Query: 168 IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC 227
              +  S +S L+ CS LSS++LGK++H    K+ LC D    + LI MY KCG +EDA 
Sbjct: 473 HCSSVISATSALMACSELSSVRLGKEMHCFALKADLCDDPFLSSSLIDMYSKCGFVEDAR 532

Query: 228 KLFLEIQRKDV-VTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHA 286
             F  ++ +D  V+W AMI+GYA +G G +A+ L+ KM+ EGM+PD  T++ LL+AC HA
Sbjct: 533 TFFDRLKARDAKVSWTAMITGYAVNGLGREAVELYGKMRREGMEPDEFTYLGLLMACGHA 592

Query: 287 GLVDLGIQYFDSMVNDY-GIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFG 345
           G+++ G+++FD M N +  I  K +HY+C++ +L RAG+  +AV L+ +MP +P   I  
Sbjct: 593 GMLEEGLRFFDEMRNHHHKIEVKLEHYSCVIGMLSRAGRFADAVALMAEMPQEPDAKILS 652

Query: 346 TLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKEN 405
           ++LSAC +H   +L    A  L  L P + A  YV  +N+YA  ++WDD+ ++R  +++ 
Sbjct: 653 SVLSACHIHGEAELGSDVAERLLELEP-DKAEHYVLASNMYAGSRRWDDMRKVRKMLRDA 711

Query: 406 NVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAV 465
            + K PG SWI+V   V+ F +G+  HPE+  +    + LE+R++  GYVPD    LH +
Sbjct: 712 GIAKEPGCSWIDVAGKVYSFVAGENPHPEMEQVRGMWRSLEERIREIGYVPDTTVVLHEL 771

Query: 466 GEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIV 525
            EE K + L +HSEK A+ FGL++      +RVFKN+R+C DCH A + IS +  R+I+V
Sbjct: 772 EEEEKVEALWWHSEKQAVTFGLLRTATPATVRVFKNIRMCKDCHNAARLISKVTGRDIVV 831

Query: 526 RDTTRFHHFKDGTCSCGDYW 545
           RD  RFHHF+ G CSCGDYW
Sbjct: 832 RDKKRFHHFRGGICSCGDYW 851



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 84/297 (28%), Positives = 147/297 (49%), Gaps = 23/297 (7%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
           N+++  +AK  G+L DA+  F + P   VVS+N+ML     N  +  AAF   + + IK+
Sbjct: 209 NALVDMYAKC-GELADAERAFPEAPS--VVSWNVMLGAYTRNR-EAGAAFGLLRDMQIKE 264

Query: 70  TASWN-------TMISGFVQKKNMAKARDLFLAMPEKNSVSWS-----AMISGYIECGQL 117
             S         +++        +++ R+L      +   + S     A+++ Y  CG+L
Sbjct: 265 HGSVPADEITVLSVLPACSGPTELSRLRELHAFTVRRGLDAASDKVPNALVAAYGRCGRL 324

Query: 118 DKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSS 177
             A  +F     K+V +W  +IS + +    +N+ A   L  ++M    G++P+  S+ S
Sbjct: 325 LHADRVFTDIRRKTVSSWNTLISAHAQ----QNTAAAIEL-FIQMTNACGLKPDGFSIGS 379

Query: 178 VLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK-LFLEIQRK 236
           +L+ C+    L   K  H  + ++ L +DT     L+S Y +C   E   + LF  ++ K
Sbjct: 380 LLMACADPKHLLHVKATHGFILRNGLERDTVIRASLLSAYIRCSRTEYLARVLFDAMEEK 439

Query: 237 DVVTWNAMISGYAQHGKGEKALRLFDKMKD-EGMKPDSITFVALLLACNHAGLVDLG 292
             V W AMISGY+Q+G   ++L+LF +M+  EG     I+  + L+AC+    V LG
Sbjct: 440 GEVLWIAMISGYSQNGLPGESLQLFREMQSVEGHCSSVISATSALMACSELSSVRLG 496



 Score = 85.1 bits (209), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 87/312 (27%), Positives = 149/312 (47%), Gaps = 32/312 (10%)

Query: 79  GFVQKKNMAKARDLF-----LAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAP--VKS 131
           GF++    A  R +      L +P    V  ++++S Y  CG+++ A ++F   P   ++
Sbjct: 77  GFLRVGAAAAGRQVHALAAKLGLPGDPFVG-NSLVSMYGRCGRVEDAEKVFGGIPDAARN 135

Query: 132 VVAWTAMISGYMKFGYVENSWAEDGLKLLR-MMIGLGIRPNASSLSSVLLGCSHLSSLQL 190
           +V+W A+++         +     GL+L R  ++ +G   + ++L +VL  C+ L   + 
Sbjct: 136 IVSWNALMAAL-------SGDPRRGLELFRDCLVAVGGMVDEATLVTVLPMCAALGWSET 188

Query: 191 GKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQ 250
           G+ VH L  KS           L+ MY KCG+L DA + F E     VV+WN M+  Y +
Sbjct: 189 GRAVHGLAAKSGWDAPARVGNALVDMYAKCGELADAERAFPEA--PSVVSWNVMLGAYTR 246

Query: 251 HGKGEKALRLFDKM--KDEGMKP-DSITFVALLLACNHAGLVDLG-IQYFDSMVNDYGIA 306
           + +   A  L   M  K+ G  P D IT +++L AC+  G  +L  ++   +     G+ 
Sbjct: 247 NREAGAAFGLLRDMQIKEHGSVPADEITVLSVLPACS--GPTELSRLRELHAFTVRRGLD 304

Query: 307 AKPDHY-TCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAM 365
           A  D     +V   GR G+L+ A  +   +  K   + + TL+SA   H + + A  AA+
Sbjct: 305 AASDKVPNALVAAYGRCGRLLHADRVFTDIRRKTVSS-WNTLISA---HAQQNTA--AAI 358

Query: 366 NLFNLNPANAAG 377
            LF +   NA G
Sbjct: 359 ELF-IQMTNACG 369



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 84/189 (44%), Gaps = 11/189 (5%)

Query: 167 GIRPNASSLSSVLLGCSHL--SSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 224
           GI P+  +L      C  L   +   G+QVH L  K  L  D      L+SMY +CG +E
Sbjct: 61  GIAPDRFTLPPAARSCGFLRVGAAAAGRQVHALAAKLGLPGDPFVGNSLVSMYGRCGRVE 120

Query: 225 DACKLFLEI--QRKDVVTWNAMISGYAQHGKGEKALRLF-DKMKDEGMKPDSITFVALLL 281
           DA K+F  I    +++V+WNA+++  A  G   + L LF D +   G   D  T V +L 
Sbjct: 121 DAEKVFGGIPDAARNIVSWNALMA--ALSGDPRRGLELFRDCLVAVGGMVDEATLVTVLP 178

Query: 282 ACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQP 341
            C   G  + G +    +    G  A       +VD+  + G+L +A    +  P  P  
Sbjct: 179 MCAALGWSETG-RAVHGLAAKSGWDAPARVGNALVDMYAKCGELADAE---RAFPEAPSV 234

Query: 342 AIFGTLLSA 350
             +  +L A
Sbjct: 235 VSWNVMLGA 243


>gi|225457243|ref|XP_002281020.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 580

 Score =  369 bits (948), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 200/534 (37%), Positives = 300/534 (56%), Gaps = 17/534 (3%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G +  A  +F     P++  +N ++    + SD  + A   ++ + +   +  N+   GF
Sbjct: 55  GHVAYAHRIFSCTHHPNLFMWNTIIRGYSI-SDSPITAIALYRDMFLCGISP-NSYTFGF 112

Query: 81  VQKK-----NMAKARDLFLAMPEKNSVSWSAMISG----YIECGQLDKAVELFKVAPVKS 131
           V K       + + ++L   + +      + +++G    Y  CG +D A  +F   P   
Sbjct: 113 VLKACCKLLRLCEGQELHSQIVKVGLDFETPLVNGLIKLYAACGCMDYACVMFDEMPEPD 172

Query: 132 VVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLG 191
             +W+ M+SGY      +N  A + LKL R M    +  +A +L+SV+  C  L +L LG
Sbjct: 173 SASWSTMVSGY-----AQNGQAVEALKLFREMQAENVSSDAFTLASVVGVCGDLGALDLG 227

Query: 192 KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQH 251
           K VH  + K  +  D    T L+ MY KCG L++A K+F  +  +DV  W+ MI+GYA H
Sbjct: 228 KWVHSYMDKEGVKIDVVLGTALVGMYSKCGSLDNALKVFQGMAERDVTAWSTMIAGYAIH 287

Query: 252 GKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDH 311
           G GEKAL+LFD MK     P+ +TF ++L AC+H+GLV+ G Q F++M  +Y I  +  H
Sbjct: 288 GHGEKALQLFDAMKRSKTIPNCVTFTSVLSACSHSGLVEKGHQIFETMWTEYKITPQIKH 347

Query: 312 YTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLN 371
           Y CMVDL  RAG +  A   I+ MP +P   ++ TLL AC+ H   DL E  +  +  L+
Sbjct: 348 YGCMVDLFCRAGMVGHAHKFIQTMPIEPNVVLWRTLLGACKTHGYKDLGEHISRKILKLD 407

Query: 372 PANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRV 431
           P++    YV ++N+YA++ +W  V ++R  MK+    K  G+S IE+  +VH+F  GD  
Sbjct: 408 PSSPEN-YVLVSNVYASLGRWSSVCQVRSLMKDKAPKKQHGWSSIEINFMVHKFIMGDES 466

Query: 432 HPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVP 491
           HPE   I+  L ++ +++K  G+V      LH + EE KE  L  HSE+LAIA+GL+  P
Sbjct: 467 HPEREKIYGMLHQMARKLKQVGHVNSTVDVLHDIDEEEKEYALGLHSERLAIAYGLLHTP 526

Query: 492 LGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
            G+PIR+ KNLRVC DCH   K IS +  REIIVRD  RFHHF++  CSC DYW
Sbjct: 527 NGSPIRIVKNLRVCRDCHEVIKLISEVYNREIIVRDRVRFHHFRERGCSCNDYW 580


>gi|297800868|ref|XP_002868318.1| hypothetical protein ARALYDRAFT_330113 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297314154|gb|EFH44577.1| hypothetical protein ARALYDRAFT_330113 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1057

 Score =  369 bits (947), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 194/478 (40%), Positives = 289/478 (60%), Gaps = 17/478 (3%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVV 133
           ++++  + + + +  A+ +F ++  KN++SW+AM+SGY + G+ ++A+ELF+  PVK++ 
Sbjct: 81  SSLVDMYAKCRLLDCAKAVFDSIRVKNTISWTAMVSGYAKSGRKEEALELFRRLPVKNLY 140

Query: 134 AWTAMISGYMKFG------YVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSS 187
           +WTA+ISG+++ G       V      + + +L  ++          LSS++  C++L++
Sbjct: 141 SWTALISGFVQSGKGLEAFSVFTEMRRERVDILDPLV----------LSSIVGACANLAA 190

Query: 188 LQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISG 247
              G+QVH LV              LI MY KC D+  A  +F  ++ +DVV+W ++I G
Sbjct: 191 SIAGRQVHGLVIALGFDSCVFISNALIDMYAKCSDVIAAKDIFSRMRHRDVVSWTSLIVG 250

Query: 248 YAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAA 307
            AQHG+ EKAL L+D+M   G+KP+ +TFV L+ AC+H G V  G + F SM  DYGI  
Sbjct: 251 MAQHGQAEKALALYDEMVSHGVKPNEVTFVGLIYACSHVGFVAKGRELFQSMTKDYGIRP 310

Query: 308 KPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNL 367
              HYTC++DLLGR+G L EA +LI  MPF P    +  LLSAC+   +  +    A +L
Sbjct: 311 SLQHYTCLLDLLGRSGLLDEAENLIHTMPFPPDEPTWAALLSACKRQGQGQMGVRIADHL 370

Query: 368 FNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRS 427
            +         Y+ L+NIYA+   W  V+  R  + +  V K PGYS +EV      F +
Sbjct: 371 VSSFKPKDPSTYILLSNIYASASLWGKVSEARRKLGDMEVRKDPGYSSVEVRKETEVFYA 430

Query: 428 GDRVHPELVSIHEKLKELEKRMKLA-GYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFG 486
           G+  H     I   LK+LE+ M++  GYVPD  + LH + E+ KE+LL +HSE+ A+A+G
Sbjct: 431 GETSHALKEDIFRLLKKLEEEMRIRNGYVPDTSWILHDMDEQEKEKLLFWHSERSAVAYG 490

Query: 487 LIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDY 544
           L+K   GTPIR+ KNLRVCGDCH   K+IS I +REIIVRD TR+HHFK G CSC D+
Sbjct: 491 LLKAVPGTPIRIVKNLRVCGDCHVVLKHISEITEREIIVRDATRYHHFKGGKCSCNDF 548



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 72/290 (24%), Positives = 141/290 (48%), Gaps = 18/290 (6%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           + VK T++W ++++G+AK  G+ ++A ELF ++P  ++ S+  ++S   + S   + AF 
Sbjct: 103 IRVKNTISWTAMVSGYAKS-GRKEEALELFRRLPVKNLYSWTALISG-FVQSGKGLEAFS 160

Query: 61  FF-----QRLPIKDTASWNTMISGFVQKKNMAKARD---LFLAMPEKNSVSWS-AMISGY 111
            F     +R+ I D    ++++            R    L +A+   + V  S A+I  Y
Sbjct: 161 VFTEMRRERVDILDPLVLSSIVGACANLAASIAGRQVHGLVIALGFDSCVFISNALIDMY 220

Query: 112 IECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPN 171
            +C  +  A ++F     + VV+WT++I G  + G      AE  L L   M+  G++PN
Sbjct: 221 AKCSDVIAAKDIFSRMRHRDVVSWTSLIVGMAQHGQ-----AEKALALYDEMVSHGVKPN 275

Query: 172 ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDT-TALTPLISMYCKCGDLEDACKLF 230
             +   ++  CSH+  +  G+++ Q + K    + +    T L+ +  + G L++A  L 
Sbjct: 276 EVTFVGLIYACSHVGFVAKGRELFQSMTKDYGIRPSLQHYTCLLDLLGRSGLLDEAENLI 335

Query: 231 LEIQ-RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVAL 279
             +    D  TW A++S   + G+G+  +R+ D +       D  T++ L
Sbjct: 336 HTMPFPPDEPTWAALLSACKRQGQGQMGVRIADHLVSSFKPKDPSTYILL 385



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 37/97 (38%), Positives = 60/97 (61%)

Query: 168 IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC 227
           +RP+    S+++  C++L S++LGKQVH     S    D    + L+ MY KC  L+ A 
Sbjct: 38  LRPDDFVFSALVKACANLGSIKLGKQVHCHFIVSEYSNDDVVKSSLVDMYAKCRLLDCAK 97

Query: 228 KLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKM 264
            +F  I+ K+ ++W AM+SGYA+ G+ E+AL LF ++
Sbjct: 98  AVFDSIRVKNTISWTAMVSGYAKSGRKEEALELFRRL 134


>gi|302764988|ref|XP_002965915.1| hypothetical protein SELMODRAFT_167728 [Selaginella moellendorffii]
 gi|300166729|gb|EFJ33335.1| hypothetical protein SELMODRAFT_167728 [Selaginella moellendorffii]
          Length = 912

 Score =  369 bits (947), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 201/539 (37%), Positives = 316/539 (58%), Gaps = 16/539 (2%)

Query: 7   VNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP 66
           V W +++  +    GKL +++ ++  +P+ + VS+  M+     N + VV A      LP
Sbjct: 390 VAWTALIQAYGVN-GKLTESKRVYALMPERNRVSHTAMIIAYSQNGE-VVQARKMLDTLP 447

Query: 67  IKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKV 126
             D ++  +MI  + Q   +  AR++F ++   + ++ +AM+  Y     LD A  +F  
Sbjct: 448 DPDQSTRTSMIVAYAQNGYIKDAREMFDSIKNPDVIACNAMMEAYSSAQMLDHAKAMFDS 507

Query: 127 APVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLS 186
              K++V+W  M++ Y + G +      D  K +   I     P+ + +S  ++  ++  
Sbjct: 508 IKQKTLVSWNTMVAAYAQAGNL------DEAKSIFDSI-----PHKNVVSHNVMIVAYAH 556

Query: 187 SLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMIS 246
           ++ L +   + +F S   KDT   T +++M  + G L +A +LF ++  ++VV+WN++I+
Sbjct: 557 NMDLAEA--RRIFYSMDEKDTVTWTAMVAMVAQHGRLAEAQELFAKMPYRNVVSWNSLIA 614

Query: 247 GYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIA 306
           G A  G G  A+R    M++EG KPD ITF+ +L+AC+H GLV+ G  +F SM  D+G+ 
Sbjct: 615 GMASCGHGMAAVRYLYVMRNEGAKPDHITFMGILIACSHVGLVEEGWTHFTSMQGDHGLI 674

Query: 307 AKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMN 366
              +HY  MVD+LGRAG+L  A +L++ MPF P    +G+LL +C+ H  + L   AA +
Sbjct: 675 PWREHYCRMVDVLGRAGQLGAARELLETMPFIPDVGAWGSLLGSCKTHSDVKLGTRAAES 734

Query: 367 LFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFR 426
           L   +   ++G YV LAN+Y+++ +  D   +R  MK   V K PG S I V  V+H F 
Sbjct: 735 LLQFDD-QSSGPYVLLANMYSSVGRVADALAVRNRMKARGVKKQPGVSLIRVDGVLHRFV 793

Query: 427 SGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFG 486
           +G+  HP    I  +L  L++ MK AGY PD +  LH++ +E KE LL +HSEKLAIAF 
Sbjct: 794 AGEASHPRHQEILSELSRLQELMKKAGYQPDTKAVLHSILDEEKEVLLSYHSEKLAIAFA 853

Query: 487 LIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
            I    GTPIR+ KNLRVC DCH ATK++S + +REIIVRD  RFH+F++GTCSCGDYW
Sbjct: 854 SIACEPGTPIRIMKNLRVCSDCHTATKFLSKLLQREIIVRDGYRFHNFENGTCSCGDYW 912



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 91/335 (27%), Positives = 168/335 (50%), Gaps = 31/335 (9%)

Query: 22  KLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFV 81
           ++ DAQ +F+++P+P+V S  I++     N D + +A   F ++P  +  SWN++I+GF 
Sbjct: 62  RIDDAQAVFNELPEPNVFSRCILMQAYSENGD-LGSAKAIFDQIPSHNVVSWNSLIAGFS 120

Query: 82  QKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISG 141
           Q   M+ A ++F  MP  +S SW++MI+GY + G L  A  +F   P  +V++W A+I+G
Sbjct: 121 QHGFMSNADEIFARMPRWSSSSWNSMITGYAQSGDLASATAMFDRTPEHNVISWNALITG 180

Query: 142 YMKF-------GYVENSWAEDGLKLLRMMIGLGIRPNASSLSSV--------LLGCSHL- 185
           Y          G  + +   D +    M+       +  S   V        ++ C+ + 
Sbjct: 181 YSDNRMIPEAKGVFDRAPGRDKISWNAMLTAYAQSGDLDSAKEVFDRTPQQDIVSCTLMI 240

Query: 186 --SSLQ--LGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTW 241
              ++Q  LG  V   +F +   ++  + + +I +Y   G + +A  L   + ++D   W
Sbjct: 241 KACAVQEILGHAVE--IFAAMPDRNAVSYSFMIQIYIDQGKIGEAENLSRRMPQQDPTLW 298

Query: 242 NAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN 301
            +M+S Y++HG  E+A R+FD+      + D +++ ALL A   AG + L    F+ M  
Sbjct: 299 TSMLSAYSRHGLVEEARRIFDR---AARRDDEVSWNALLSAYAQAGHLHLARSTFERMPR 355

Query: 302 DYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 336
              +A     +T ++ + G+ G+L EA  L   +P
Sbjct: 356 HDVVA-----WTALIAVSGQNGQLEEAEVLYDLIP 385



 Score =  131 bits (330), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 91/333 (27%), Positives = 171/333 (51%), Gaps = 25/333 (7%)

Query: 5   TTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQR 64
             V+WNS++AGF+ Q G + +A E+F ++P+    S+N M++     S D+ +A   F R
Sbjct: 108 NVVSWNSLIAGFS-QHGFMSNADEIFARMPRWSSSSWNSMITG-YAQSGDLASATAMFDR 165

Query: 65  LPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELF 124
            P  +  SWN +I+G+   + + +A+ +F   P ++ +SW+AM++ Y + G LD A E+F
Sbjct: 166 TPEHNVISWNALITGYSDNRMIPEAKGVFDRAPGRDKISWNAMLTAYAQSGDLDSAKEVF 225

Query: 125 KVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSH 184
              P + +V+ T MI    K   V+       +++   M      P+ +++S   +   +
Sbjct: 226 DRTPQQDIVSCTLMI----KACAVQEILGH-AVEIFAAM------PDRNAVSYSFMIQIY 274

Query: 185 LSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK-DVVTWNA 243
           +   ++G +   L  + P  +D T  T ++S Y + G +E+A ++F    R+ D V+WNA
Sbjct: 275 IDQGKIG-EAENLSRRMPQ-QDPTLWTSMLSAYSRHGLVEEARRIFDRAARRDDEVSWNA 332

Query: 244 MISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDY 303
           ++S YAQ G    A   F++M     + D + + AL+      G ++     +D ++ + 
Sbjct: 333 LLSAYAQAGHLHLARSTFERMP----RHDVVAWTALIAVSGQNGQLEEAEVLYD-LIPER 387

Query: 304 GIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 336
            + A    +T ++   G  GKL E+  +   MP
Sbjct: 388 DLVA----WTALIQAYGVNGKLTESKRVYALMP 416



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 87/362 (24%), Positives = 170/362 (46%), Gaps = 46/362 (12%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQ 63
           +  ++WN++L  +A Q G L  A+E+FD+ PQ D+VS  +M+    +  + +  A + F 
Sbjct: 200 RDKISWNAMLTAYA-QSGDLDSAKEVFDRTPQQDIVSCTLMIKACAVQ-EILGHAVEIFA 257

Query: 64  RLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVEL 123
            +P ++  S++ MI  ++ +  + +A +L   MP+++   W++M+S Y   G +++A  +
Sbjct: 258 AMPDRNAVSYSFMIQIYIDQGKIGEAENLSRRMPQQDPTLWTSMLSAYSRHGLVEEARRI 317

Query: 124 F-KVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGC 182
           F + A     V+W A++S Y + G+         L L R       R +  + ++++   
Sbjct: 318 FDRAARRDDEVSWNALLSAYAQAGH---------LHLARSTFERMPRHDVVAWTALIAVS 368

Query: 183 SHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWN 242
                L+  + ++ L+ +    +D  A T LI  Y   G L ++ +++  +  ++ V+  
Sbjct: 369 GQNGQLEEAEVLYDLIPE----RDLVAWTALIQAYGVNGKLTESKRVYALMPERNRVSHT 424

Query: 243 AMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDS---- 298
           AMI  Y+Q+G+  +A ++ D + D    PD  T  ++++A    G +    + FDS    
Sbjct: 425 AMIIAYSQNGEVVQARKMLDTLPD----PDQSTRTSMIVAYAQNGYIKDAREMFDSIKNP 480

Query: 299 -------MVNDYGIAAKPDH---------------YTCMVDLLGRAGKLVEAVDLIKKMP 336
                  M+  Y  A   DH               +  MV    +AG L EA  +   +P
Sbjct: 481 DVIACNAMMEAYSSAQMLDHAKAMFDSIKQKTLVSWNTMVAAYAQAGNLDEAKSIFDSIP 540

Query: 337 FK 338
            K
Sbjct: 541 HK 542



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 68/281 (24%), Positives = 135/281 (48%), Gaps = 23/281 (8%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVV 133
           N +I  + +   +  A+ +F  +PE N  S   ++  Y E G L  A  +F   P  +VV
Sbjct: 51  NLIIQMYGKCSRIDDAQAVFNELPEPNVFSRCILMQAYSENGDLGSAKAIFDQIPSHNVV 110

Query: 134 AWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ 193
           +W ++I+G+ + G++ N+   D +   RM      R ++SS +S++ G +    L     
Sbjct: 111 SWNSLIAGFSQHGFMSNA---DEI-FARM-----PRWSSSSWNSMITGYAQSGDLASATA 161

Query: 194 VHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGK 253
               +F      +  +   LI+ Y     + +A  +F     +D ++WNAM++ YAQ G 
Sbjct: 162 ----MFDRTPEHNVISWNALITGYSDNRMIPEAKGVFDRAPGRDKISWNAMLTAYAQSGD 217

Query: 254 GEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYT 313
            + A  +FD+   +    D ++   ++ AC    ++   ++ F +M +   ++     Y+
Sbjct: 218 LDSAKEVFDRTPQQ----DIVSCTLMIKACAVQEILGHAVEIFAAMPDRNAVS-----YS 268

Query: 314 CMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVH 354
            M+ +    GK+ EA +L ++MP +  P ++ ++LSA   H
Sbjct: 269 FMIQIYIDQGKIGEAENLSRRMP-QQDPTLWTSMLSAYSRH 308


>gi|115468046|ref|NP_001057622.1| Os06g0472300 [Oryza sativa Japonica Group]
 gi|113595662|dbj|BAF19536.1| Os06g0472300, partial [Oryza sativa Japonica Group]
          Length = 397

 Score =  369 bits (947), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 187/400 (46%), Positives = 250/400 (62%), Gaps = 3/400 (0%)

Query: 146 GYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCK 205
           G+ ++      ++L   M   G   N  +L+SVL  C+ L +L++G+QVH  V K    K
Sbjct: 1   GFAQSGDGVGAIELFMRMKEAGFLSNQGTLTSVLRACTGLVTLEVGRQVHAHVLKYD--K 58

Query: 206 DTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMK 265
           D      L+ MYCKCG L+DA  LF  + ++DV++W+ MISG AQ+G+  +AL++FD MK
Sbjct: 59  DLILHNALLDMYCKCGSLQDADALFGRMPQRDVISWSTMISGLAQNGRSIEALKVFDMMK 118

Query: 266 DEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKL 325
            EG +P+ IT V +L AC+HAGLV+ G  YF SM   +GI  + +H  CMVDLLGRAGKL
Sbjct: 119 SEGPRPNHITMVGVLFACSHAGLVEDGWYYFSSMEKLFGIQPEREHCNCMVDLLGRAGKL 178

Query: 326 VEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANI 385
            +AV  I +M F+P   I+ TLL ACR+HK  DLA +AA  +  L P +  G  + L+N 
Sbjct: 179 DDAVKFIHEMNFQPDSVIWRTLLGACRMHKNADLAAYAAKEILRLEP-DDQGARILLSNT 237

Query: 386 YAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKEL 445
           YA +++W D  +    M++  V K PG SWIE+G  VH F +GD  HP   SI ++L  L
Sbjct: 238 YADLRQWADAEKSWKMMRDRGVKKDPGRSWIELGKQVHVFIAGDLSHPCSESIIQELSRL 297

Query: 446 EKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVC 505
             R+   GY P  EF L  +  E KE LL +HSEKLAIAFG +    G PIR+ KNLR+C
Sbjct: 298 FSRVTNLGYTPQTEFVLQDLATEQKEDLLKYHSEKLAIAFGTMNAMEGKPIRIMKNLRIC 357

Query: 506 GDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           GDCH   K +S  E + II+RD  RFHHF+DG CSC DYW
Sbjct: 358 GDCHAFAKLVSKSEGKVIIIRDPVRFHHFQDGVCSCNDYW 397



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 76/165 (46%), Gaps = 13/165 (7%)

Query: 98  EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGL 157
           +K+ +  +A++  Y +CG L  A  LF   P + V++W+ MIS     G  +N  + + L
Sbjct: 57  DKDLILHNALLDMYCKCGSLQDADALFGRMPQRDVISWSTMIS-----GLAQNGRSIEAL 111

Query: 158 KLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLG----KQVHQLVFKSPLCKDTTALTPL 213
           K+  MM   G RPN  ++  VL  CSH   ++ G      + +L    P  +    +  L
Sbjct: 112 KVFDMMKSEGPRPNHITMVGVLFACSHAGLVEDGWYYFSSMEKLFGIQPEREHCNCMVDL 171

Query: 214 ISMYCKCGDLEDACKLFLEIQ-RKDVVTWNAMISGYAQHGKGEKA 257
           +    + G L+DA K   E+  + D V W  ++     H   + A
Sbjct: 172 LG---RAGKLDDAVKFIHEMNFQPDSVIWRTLLGACRMHKNADLA 213


>gi|125546028|gb|EAY92167.1| hypothetical protein OsI_13880 [Oryza sativa Indica Group]
          Length = 671

 Score =  369 bits (947), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 204/542 (37%), Positives = 305/542 (56%), Gaps = 20/542 (3%)

Query: 17  AKQRGKLKDAQELFDKIPQP-DVVSYNIMLSCILLNSDDVVAAFD---FFQRL----PIK 68
           A+    L  A+++FD+IP P DV+ YN +L            A +    F R+       
Sbjct: 77  AEAPAHLAYARQVFDRIPHPGDVIWYNTLLRGYARGGGGGGGAEEAARVFVRMMEEGVAP 136

Query: 69  DTASWNTMISGFVQKKNMAKARDL----FLAMPEKNSVSWSAMISGYIECGQLDKAVELF 124
           DT ++ +++      +   + R        A   ++      +I+ Y ECG +  A  +F
Sbjct: 137 DTYTFVSLLKACASARAGEEGRQAHGVAVKAGAAEHEYVAPTLINMYAECGDVRAARVMF 196

Query: 125 KVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSH 184
                + VV++ AMI+       V +S   + L L R M   G++P + +L SVL  C+ 
Sbjct: 197 DRMDGECVVSYNAMITAS-----VRSSLPGEALVLFREMQAKGLKPTSVTLISVLSACAL 251

Query: 185 LSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAM 244
           L +L+LG+ +H  + K  L       T LI MY KCG LEDA  +F +++ +D   W+ M
Sbjct: 252 LGALELGRWIHDYIRKMRLDSLVKVNTALIDMYAKCGSLEDAIGVFQDMESRDKQAWSVM 311

Query: 245 ISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYG 304
           +  YA HG G +A+ +F++MK +GMKPD +TF+ +L AC+H+G+V  G+QYFDSM  +YG
Sbjct: 312 MVAYANHGYGREAISMFEEMKKQGMKPDDVTFLGVLYACSHSGMVSEGLQYFDSM-REYG 370

Query: 305 IAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAA 364
           I +   HY C+ DLL R+G+L  A   I ++P KP   ++ TLLSAC  H  +D+ +   
Sbjct: 371 IVSGIKHYGCVTDLLARSGQLERAYKFIDELPIKPTAILWRTLLSACAGHGDVDMGKRVF 430

Query: 365 MNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHE 424
             +  L+ ++  G YV  +N+ A   +W+++  +R  M E  VVK+PG S IE+  +VHE
Sbjct: 431 ERILELDDSH-GGDYVIFSNLCANTGRWEEMNMVRKLMSEKGVVKVPGCSSIEIDNMVHE 489

Query: 425 FRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHA-VGEEVKEQLLLFHSEKLAI 483
           F +GD  HP        + E+ +++KL GYVP+     H  +GEE K   L +HSEKLAI
Sbjct: 490 FFAGDGSHPHSQEARRMVDEVIEQLKLVGYVPNTSHVFHVEMGEEEKATSLRYHSEKLAI 549

Query: 484 AFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGD 543
           +FGL+    GT +R+ KNLRVC DCH   K +S +  R II+RD  RFHHF+DG CSCGD
Sbjct: 550 SFGLLNTAPGTTLRIVKNLRVCPDCHSMAKLVSMVFNRRIILRDLNRFHHFEDGVCSCGD 609

Query: 544 YW 545
           YW
Sbjct: 610 YW 611


>gi|18483237|gb|AAL73981.1|AF466201_10 putative vegetative storage protein [Sorghum bicolor]
          Length = 779

 Score =  369 bits (947), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 215/626 (34%), Positives = 330/626 (52%), Gaps = 87/626 (13%)

Query: 1   MNVKTTVNWNSVLAGFA---------------KQRGKLK-DAQELFDKIP---------- 34
           M ++  V WN++LAG+A               + RG L+ +A  L   +P          
Sbjct: 160 MPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDRGGLRPNASTLVSLLPLLAQHGALFQ 219

Query: 35  QPDVVSY-----------NIMLSCILLN----SDDVVAAFDFFQRLPIKDTASWNTMISG 79
              V +Y            +++   LL+       +V A   F  + +++  +W+ +I G
Sbjct: 220 GTSVHAYCLRAYLDQNEEQVLIGTALLDMYAKCKHLVYACRVFHGMTVRNEVTWSALIGG 279

Query: 80  FVQKKNMAKARDLFLAMPEKNSVSWSA--------------------------------- 106
           FV    M +A +LF  M  +     SA                                 
Sbjct: 280 FVLCDRMTEAFNLFKDMLVEGMCFLSATSVASALRVCASLADLRMGTQLHALLAKSGIHA 339

Query: 107 -------MISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKL 159
                  ++S Y + G +++A  LF    +K  +++ A++SGY     V+N  AE+   +
Sbjct: 340 DLTAGNSLLSMYAKAGLINEATMLFDEIAIKDTISYGALLSGY-----VQNGKAEEAFLV 394

Query: 160 LRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCK 219
            + M    ++P+ +++ S++  CSHL++LQ G+  H  V    L  +T+    LI MY K
Sbjct: 395 FKKMQACNVQPDIATMVSLIPACSHLAALQHGRCSHGSVIIRGLALETSICNSLIDMYAK 454

Query: 220 CGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVAL 279
           CG ++ + ++F ++  +D+V+WN MI+GY  HG G++A  LF  MK++G +PD +TF+ L
Sbjct: 455 CGRIDLSRQVFDKMPARDIVSWNTMIAGYGIHGLGKEATTLFLSMKNQGFEPDDVTFICL 514

Query: 280 LLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKP 339
           + AC+H+GLV  G  +FD+M + YGI  + +HY CMVDLL R G L EA   I+ MP K 
Sbjct: 515 IAACSHSGLVTEGKHWFDTMTHKYGILPRMEHYICMVDLLARGGFLDEAYQFIQSMPLKA 574

Query: 340 QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIR 399
              ++G LL ACR+HK +DL +  +  +  L P    G +V L+NI++A  ++D+ A +R
Sbjct: 575 DVRVWGALLGACRIHKNIDLGKQVSRMIQKLGP-EGTGNFVLLSNIFSAAGRFDEAAEVR 633

Query: 400 LSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLE 459
           +  K     K PG SWIE+   +H F  GD+ HP    I+ +L  +   +K  GY  D  
Sbjct: 634 IIQKVKGFKKSPGCSWIEINGSLHAFVGGDQSHPCSPDIYHELDNILIDIKKLGYQADTS 693

Query: 460 FALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIE 519
           F L  + EE KE+ LL+HSEKLAIAFG++ +     I V KNLRVCGDCH A KY++ + 
Sbjct: 694 FVLQDLEEEEKEKALLYHSEKLAIAFGVLSLNEDKTIFVTKNLRVCGDCHTAIKYMTLVR 753

Query: 520 KREIIVRDTTRFHHFKDGTCSCGDYW 545
            R IIVRD  RFHHFK+G CSCGD+W
Sbjct: 754 NRTIIVRDANRFHHFKNGQCSCGDFW 779



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 83/329 (25%), Positives = 143/329 (43%), Gaps = 38/329 (11%)

Query: 99  KNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWA---ED 155
           K++  W   +  +I  GQL  A ++F   P     A+ A+I  Y        SW      
Sbjct: 31  KDNKEWQQELEQHIARGQLALARQVFDRIPAPDARAYNALIRAY--------SWRGPFHA 82

Query: 156 GLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLIS 215
            + L R M+   + PN  +   VL  CS L+ L  G+ +H       L  D    T LI 
Sbjct: 83  AIDLYRSMLYFRVPPNKYTFPFVLKACSALADLCAGRTIHAHAAAVGLHTDLFVSTALID 142

Query: 216 MYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE-GMKPDSI 274
           +Y +C     A  +F ++  +DVV WNAM++GYA HG    A+     M+D  G++P++ 
Sbjct: 143 LYIRCARFGPAANVFAKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDRGGLRPNAS 202

Query: 275 TFVALL-LACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY-------TCMVDLLGRAGKLV 326
           T V+LL L   H  L      +  + V+ Y + A  D         T ++D+  +   LV
Sbjct: 203 TLVSLLPLLAQHGAL------FQGTSVHAYCLRAYLDQNEEQVLIGTALLDMYAKCKHLV 256

Query: 327 EAVDLIKKMPFKPQ---PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLA 383
            A  +   M  + +    A+ G  +   R+ +        A NLF  +      C++   
Sbjct: 257 YACRVFHGMTVRNEVTWSALIGGFVLCDRMTE--------AFNLFK-DMLVEGMCFLSAT 307

Query: 384 NIYAAMKKWDDVARIRLSMKENNVVKMPG 412
           ++ +A++    +A +R+  + + ++   G
Sbjct: 308 SVASALRVCASLADLRMGTQLHALLAKSG 336


>gi|302802806|ref|XP_002983157.1| hypothetical protein SELMODRAFT_117419 [Selaginella moellendorffii]
 gi|300149310|gb|EFJ15966.1| hypothetical protein SELMODRAFT_117419 [Selaginella moellendorffii]
          Length = 704

 Score =  369 bits (947), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 206/569 (36%), Positives = 322/569 (56%), Gaps = 45/569 (7%)

Query: 7   VNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSD------------- 53
           V W +++A  + Q G+L++A+ L+D IP+ D+V++  ++    +N               
Sbjct: 151 VAWTALIA-VSGQNGQLEEAEVLYDLIPERDLVAWTALIQAYGVNGQLTESKRVYALMPE 209

Query: 54  -----------------DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM 96
                            +VV A      LP  D ++  +MI  + Q   +  AR++F ++
Sbjct: 210 RNRVSHTAMIIAYSQNGEVVQARKMLDTLPDPDQSTRTSMIVAYAQNGYIKDAREMFDSI 269

Query: 97  PEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDG 156
              + ++ +AM+  Y     LD A  +F     K++V+W  M++ Y + G +      D 
Sbjct: 270 KNPDVIACNAMMEAYSSAQMLDHAKAMFDSIKQKTLVSWNTMVAAYAQAGNL------DE 323

Query: 157 LKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISM 216
            K +   I     P+ + +S  ++  ++  ++ L +   + +F S   KDT   T +++M
Sbjct: 324 AKSIFDSI-----PHKNVVSHNVMVVAYAHNMDLAEA--RRIFYSMDEKDTVTWTAMVAM 376

Query: 217 YCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITF 276
             + G L +A +LF ++  ++VV+WN++I+G A  G G  A+R    M++EG KPD ITF
Sbjct: 377 LAQHGRLAEAQELFAKMPYRNVVSWNSLIAGMASCGHGMAAVRYLYVMRNEGAKPDHITF 436

Query: 277 VALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 336
           + +L+AC+H GLV+ G  +F SM  D+G+    +HY  MVD+LGRAG+L  A +L++ MP
Sbjct: 437 MGILIACSHVGLVEEGWTHFTSMQGDHGLIPWREHYCRMVDVLGRAGQLGAARELLETMP 496

Query: 337 FKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVA 396
           F P    +G+LL +C+ H  + L   AA +L   +   ++G YV LAN+Y+++ +  D  
Sbjct: 497 FIPDVGAWGSLLGSCKTHSDVKLGTRAAESLLQFDD-QSSGPYVLLANMYSSVGRVADAL 555

Query: 397 RIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVP 456
            +R  MK   V K PG S I V  V+H F +G+  HP    I  +L  L++ MK AGY P
Sbjct: 556 AVRNRMKARGVKKQPGVSLIRVDGVLHRFVAGEASHPRHQEILSELSRLQELMKKAGYQP 615

Query: 457 DLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYIS 516
           D +  LH+V +E KE LL +HSEKLAIAF  I    GTPIR+ KNLRVC DCH ATK++S
Sbjct: 616 DTKAVLHSVLDEEKEVLLSYHSEKLAIAFASIACEPGTPIRIMKNLRVCSDCHTATKFLS 675

Query: 517 AIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
            + +REIIVRD  RFH+F++GTCSCGDYW
Sbjct: 676 KLLQREIIVRDGYRFHNFENGTCSCGDYW 704



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 95/358 (26%), Positives = 179/358 (50%), Gaps = 40/358 (11%)

Query: 5   TTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQR 64
           ++ +WNS++ G+A Q G L  A  +FD+ P+ +V+S+N +++    N     A    F  
Sbjct: 55  SSSSWNSMITGYA-QSGDLAGATAMFDRTPEHNVISWNALITGYSDNRMIPEAKGVIFDE 113

Query: 65  LPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELF 124
           +P ++  SWN ++S + Q  ++  AR  F  MP  + V+W+A+I+   + GQL++A  L+
Sbjct: 114 MPRREEVSWNALLSAYAQAGHVHLARSTFERMPRHDVVAWTALIAVSGQNGQLEEAEVLY 173

Query: 125 KVAPVKSVVAWTAMISGYMKFGYVENS---------------------WAEDG-LKLLRM 162
            + P + +VAWTA+I  Y   G +  S                     ++++G +   R 
Sbjct: 174 DLIPERDLVAWTALIQAYGVNGQLTESKRVYALMPERNRVSHTAMIIAYSQNGEVVQARK 233

Query: 163 MIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGD 222
           M+     P+ S+ +S+++  +    ++  ++    +F S    D  A   ++  Y     
Sbjct: 234 MLDTLPDPDQSTRTSMIVAYAQNGYIKDARE----MFDSIKNPDVIACNAMMEAYSSAQM 289

Query: 223 LEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA 282
           L+ A  +F  I++K +V+WN M++ YAQ G  ++A  +FD +  + +   ++  VA    
Sbjct: 290 LDHAKAMFDSIKQKTLVSWNTMVAAYAQAGNLDEAKSIFDSIPHKNVVSHNVMVVA---- 345

Query: 283 CNHAGLVDL--GIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 338
             +A  +DL    + F SM     +      +T MV +L + G+L EA +L  KMP++
Sbjct: 346 --YAHNMDLAEARRIFYSMDEKDTVT-----WTAMVAMLAQHGRLAEAQELFAKMPYR 396



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 81/334 (24%), Positives = 151/334 (45%), Gaps = 57/334 (17%)

Query: 54  DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE 113
           D+ +A   F ++P  +  SWN++I+GF Q   M+ A ++F  MP  +S SW++MI+GY +
Sbjct: 9   DLGSAKAIFDQIPSHNVVSWNSLIAGFSQHGFMSNADEIFARMPRWSSSSWNSMITGYAQ 68

Query: 114 CGQLDKAVELFKVAPVKSVVAWTAMISGY----------------------MKFGYVENS 151
            G L  A  +F   P  +V++W A+I+GY                      + +  + ++
Sbjct: 69  SGDLAGATAMFDRTPEHNVISWNALITGYSDNRMIPEAKGVIFDEMPRREEVSWNALLSA 128

Query: 152 WAEDG-LKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTAL 210
           +A+ G + L R       R +  + ++++        L+  + ++ L+ +    +D  A 
Sbjct: 129 YAQAGHVHLARSTFERMPRHDVVAWTALIAVSGQNGQLEEAEVLYDLIPE----RDLVAW 184

Query: 211 TPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMK 270
           T LI  Y   G L ++ +++  +  ++ V+  AMI  Y+Q+G+  +A ++ D + D    
Sbjct: 185 TALIQAYGVNGQLTESKRVYALMPERNRVSHTAMIIAYSQNGEVVQARKMLDTLPD---- 240

Query: 271 PDSITFVALLLACNHAGLVDLGIQYFDS-----------MVNDYGIAAKPDH-------- 311
           PD  T  ++++A    G +    + FDS           M+  Y  A   DH        
Sbjct: 241 PDQSTRTSMIVAYAQNGYIKDAREMFDSIKNPDVIACNAMMEAYSSAQMLDHAKAMFDSI 300

Query: 312 -------YTCMVDLLGRAGKLVEAVDLIKKMPFK 338
                  +  MV    +AG L EA  +   +P K
Sbjct: 301 KQKTLVSWNTMVAAYAQAGNLDEAKSIFDSIPHK 334



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 62/261 (23%), Positives = 121/261 (46%), Gaps = 21/261 (8%)

Query: 80  FVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMI 139
           + +  ++  A+ +F  +P  N VSW+++I+G+ + G +  A E+F   P  S  +W +MI
Sbjct: 4   YSENGDLGSAKAIFDQIPSHNVVSWNSLIAGFSQHGFMSNADEIFARMPRWSSSSWNSMI 63

Query: 140 SGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVF 199
           +GY + G +  + A         M       N  S ++++ G S    +   K V   +F
Sbjct: 64  TGYAQSGDLAGATA---------MFDRTPEHNVISWNALITGYSDNRMIPEAKGV---IF 111

Query: 200 KSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALR 259
                ++  +   L+S Y + G +  A   F  + R DVV W A+I+   Q+G+ E+A  
Sbjct: 112 DEMPRREEVSWNALLSAYAQAGHVHLARSTFERMPRHDVVAWTALIAVSGQNGQLEEAEV 171

Query: 260 LFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLL 319
           L+D + +     D + + AL+ A    G +    + +  M     ++     +T M+   
Sbjct: 172 LYDLIPER----DLVAWTALIQAYGVNGQLTESKRVYALMPERNRVS-----HTAMIIAY 222

Query: 320 GRAGKLVEAVDLIKKMPFKPQ 340
            + G++V+A  ++  +P   Q
Sbjct: 223 SQNGEVVQARKMLDTLPDPDQ 243



 Score = 45.4 bits (106), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 33/51 (64%)

Query: 214 ISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKM 264
           + +Y + GDL  A  +F +I   +VV+WN++I+G++QHG    A  +F +M
Sbjct: 1   MQVYSENGDLGSAKAIFDQIPSHNVVSWNSLIAGFSQHGFMSNADEIFARM 51


>gi|297836116|ref|XP_002885940.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331780|gb|EFH62199.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 944

 Score =  369 bits (946), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 188/519 (36%), Positives = 303/519 (58%), Gaps = 14/519 (2%)

Query: 16  FAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPI----KDTA 71
           F  +  ++ + + LF+++P+ D VSYN+++S     ++    + + F+ +      +   
Sbjct: 288 FYSKHDRVLETRNLFNEMPELDFVSYNVVISS-YSQAEQYEESLNLFREMQCMGFDRRNF 346

Query: 72  SWNTMISGFVQKKNMAKARDL----FLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVA 127
            + TM+S      ++   R +     +A  +      ++++  Y +C   D+A  +FK  
Sbjct: 347 PFATMLSIAANLSSLQVGRQVHCQAIVATADSILHVGNSLVDMYAKCEMFDEAELIFKSL 406

Query: 128 PVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSS 187
             +S V+WTA+ISGY     V+      GLKL   M G  +R + S+ ++VL   +  +S
Sbjct: 407 SQRSTVSWTALISGY-----VQKGLHGAGLKLFTKMRGANLRADQSTFATVLKASAGFAS 461

Query: 188 LQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISG 247
           L LGKQ+H  + +S   ++  + + L+ MY KCG ++DA ++F E+  ++ V+WNA+IS 
Sbjct: 462 LLLGKQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIKDAVQVFEEMPDRNAVSWNALISA 521

Query: 248 YAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAA 307
           YA +G GE A+  F KM   G++PDS++ + +L+AC+H G V+ G ++F +M   YGI  
Sbjct: 522 YADNGDGEAAIGAFTKMIQSGLQPDSVSILGVLIACSHCGFVEQGTEFFQAMSPIYGITP 581

Query: 308 KPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNL 367
           K  HY CM+DLLGR G+  EA  L+ +MPF+P   ++ ++L+ACR++K   LAE AA  L
Sbjct: 582 KKKHYACMLDLLGRNGRFAEAEKLMDEMPFEPDEIMWSSVLNACRIYKNQSLAERAAEQL 641

Query: 368 FNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRS 427
           F++     A  YV ++NIYAA  KW++V  ++ +M+E  + K+P YSW+EV   +H F S
Sbjct: 642 FSMEKLRDAAAYVSMSNIYAAAGKWENVRHVKKAMRERGIKKVPAYSWVEVNHKIHVFSS 701

Query: 428 GDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGL 487
            D+ HP    I +K+ EL   ++  GY PD    +  + E++K + L +HSE+LA+AF L
Sbjct: 702 NDQTHPNGDEIVKKINELTTEIEREGYKPDTSSVVQDIDEQMKIESLKYHSERLAVAFAL 761

Query: 488 IKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVR 526
           I  P G PI V KNLR C DCH A K IS I KR I  +
Sbjct: 762 ISTPEGCPIVVMKNLRACRDCHAAIKLISKIVKRVITTQ 800



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 84/273 (30%), Positives = 132/273 (48%), Gaps = 14/273 (5%)

Query: 69  DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAP 128
           DT   N  +   +++  ++ A  ++  MP KN+VS + MISGY++ G L  A  LF   P
Sbjct: 43  DTCRSNFTVEDLLRRGQVSAALKVYDEMPHKNTVSTNTMISGYVKMGDLSSARHLFDAMP 102

Query: 129 VKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSL 188
            ++VV WT ++ G+    Y  N+  ++  KL R M      P+  + +++L GC+     
Sbjct: 103 DRTVVTWTILM-GW----YAGNNHFDEAFKLFRQMCRSCTLPDYVTFTTLLPGCNDAVPQ 157

Query: 189 QLGKQVHQLVFKSPLCKDT----TALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAM 244
               QVH    K  L  DT    T    L+  YC+   L+ AC LF EI  KD VT+N +
Sbjct: 158 NAVGQVHAFAVK--LGFDTNLFLTVCNVLLKSYCEVRRLDLACVLFEEILDKDSVTFNTL 215

Query: 245 ISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGI-QYFDSMVNDY 303
           I+GY + G   +A+ LF KM+  G KP   TF  +L A    GL D  + Q    +    
Sbjct: 216 ITGYEKDGLYTEAIHLFLKMRQSGHKPSDFTFSGVLKAV--VGLHDFALGQQLHGLSVTT 273

Query: 304 GIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 336
           G +        ++    +  +++E  +L  +MP
Sbjct: 274 GFSRDASVGNQILHFYSKHDRVLETRNLFNEMP 306



 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 78/300 (26%), Positives = 141/300 (47%), Gaps = 20/300 (6%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  K TV+ N++++G+ K  G L  A+ LFD +P   VV++ I++     N +    AF 
Sbjct: 70  MPHKNTVSTNTMISGYVKM-GDLSSARHLFDAMPDRTVVTWTILMGWYAGN-NHFDEAFK 127

Query: 61  FFQRL----PIKDTASWNTMISG---FVQKKNMAKARDLFLAMPEKNSVSWSA---MISG 110
            F+++     + D  ++ T++ G    V +  + +     + +    ++  +    ++  
Sbjct: 128 LFRQMCRSCTLPDYVTFTTLLPGCNDAVPQNAVGQVHAFAVKLGFDTNLFLTVCNVLLKS 187

Query: 111 YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFG-YVENSWAEDGLKLLRMMIGLGIR 169
           Y E  +LD A  LF+    K  V +  +I+GY K G Y E       + L   M   G +
Sbjct: 188 YCEVRRLDLACVLFEEILDKDSVTFNTLITGYEKDGLYTE------AIHLFLKMRQSGHK 241

Query: 170 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 229
           P+  + S VL     L    LG+Q+H L   +   +D +    ++  Y K   + +   L
Sbjct: 242 PSDFTFSGVLKAVVGLHDFALGQQLHGLSVTTGFSRDASVGNQILHFYSKHDRVLETRNL 301

Query: 230 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL-LACNHAGL 288
           F E+   D V++N +IS Y+Q  + E++L LF +M+  G    +  F  +L +A N + L
Sbjct: 302 FNEMPELDFVSYNVVISSYSQAEQYEESLNLFREMQCMGFDRRNFPFATMLSIAANLSSL 361



 Score = 44.3 bits (103), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 48/126 (38%), Gaps = 31/126 (24%)

Query: 192 KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQH 251
           ++V   + K+    DT      +    + G +  A K++ E+  K+ V+ N MISGY + 
Sbjct: 29  RRVDARIIKTGFNTDTCRSNFTVEDLLRRGQVSAALKVYDEMPHKNTVSTNTMISGYVKM 88

Query: 252 GKGEKALRLFDKMK--------------------DEGMK-----------PDSITFVALL 280
           G    A  LFD M                     DE  K           PD +TF  LL
Sbjct: 89  GDLSSARHLFDAMPDRTVVTWTILMGWYAGNNHFDEAFKLFRQMCRSCTLPDYVTFTTLL 148

Query: 281 LACNHA 286
             CN A
Sbjct: 149 PGCNDA 154


>gi|297807343|ref|XP_002871555.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317392|gb|EFH47814.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 822

 Score =  369 bits (946), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 203/532 (38%), Positives = 295/532 (55%), Gaps = 46/532 (8%)

Query: 54  DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPE----KNSVSWSAMIS 109
           D+  AF  F  +P  D   W+ MI+ F Q     KA D+F+ M E     N  + S++++
Sbjct: 297 DMSDAFKVFNEMPKNDVVPWSFMIARFCQNGFCNKAVDIFIRMREGFVVPNEFTLSSILN 356

Query: 110 G-----------------------------------YIECGQLDKAVELFKVAPVKSVVA 134
           G                                   Y +C ++D AV+LF     K+VV+
Sbjct: 357 GCAIGKCSGLGEQLHGLVVKVGFDLDVYVSNALIDVYAKCEKMDTAVKLFAELSSKNVVS 416

Query: 135 WTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQV 194
           W  +I GY   G          L + R  +   +     + SS L  C+ L+S++LG QV
Sbjct: 417 WNTVIVGYENLGE-----GGKALNMFREALRNQVSVTEVTFSSALGACASLASMELGVQV 471

Query: 195 HQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKG 254
           H L  K+   K       LI MY KCGD++ A  +F E++  DV +WNA+ISGY+ HG G
Sbjct: 472 HGLAIKTNNAKRVAVSNSLIDMYAKCGDIKVAQTVFNEMETIDVASWNALISGYSTHGLG 531

Query: 255 EKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTC 314
            +ALR+FD MK    KP+ +TF+ +L  C++AGL+D G   F+SM+ D+GI    +HYTC
Sbjct: 532 RQALRIFDIMKGSDCKPNGLTFLGVLSGCSNAGLIDQGQDCFESMICDHGIEPCLEHYTC 591

Query: 315 MVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPAN 374
           MV L GR+G+L +A++LI+ +P++P   I+  +LSA       + A  +A  +  +NP +
Sbjct: 592 MVRLFGRSGQLDKAMNLIEGIPYEPSVMIWRAMLSASMNQYNEEFARRSAEEILKINPKD 651

Query: 375 AAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPE 434
            A  YV L+N+YA  K+W +VA IR SMKE  V K PG SWIE    VH F  G   HP+
Sbjct: 652 EA-TYVLLSNMYAGAKQWANVASIRKSMKEKGVKKEPGLSWIEHQGDVHFFSVGSSDHPD 710

Query: 435 LVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLG- 493
           +  I+  L+ L  +   AGYVPD    L  + +E K++ L  HSE+LA+A+GL+++P   
Sbjct: 711 MKLINGMLEWLNMKATRAGYVPDRNAVLLDMDDEEKDKRLWVHSERLALAYGLVRMPSSR 770

Query: 494 TPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
             I + KNLR+C DCH A K IS+I +R++++RD  RFHHF  G CSC D+W
Sbjct: 771 NRILIMKNLRICSDCHSAMKVISSIVQRDLVIRDMNRFHHFHAGVCSCDDHW 822



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 92/337 (27%), Positives = 153/337 (45%), Gaps = 20/337 (5%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK- 68
           N +L  + K  G  KDA  LFD++P+ + VSY  +         D V  +    R   + 
Sbjct: 88  NILLNAYVKA-GFDKDALNLFDEMPERNNVSYVTLTQGYACQ--DPVGLYSRLHREGHEL 144

Query: 69  DTASWNTMISGFVQKKNMAKARDLF-LAMP------EKNSVSWSAMISGYIECGQLDKAV 121
           +   + + +  FV   ++ KA   + L  P      + N+   +A+I+ Y  CG +D A 
Sbjct: 145 NPHVFTSFLKLFV---SLDKAEICWWLHSPIVKLGYDSNAFVGAALINAYSVCGSVDSAR 201

Query: 122 ELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLG 181
            +F+    K +V W  ++S Y     VEN   ED L+LL  M   G  PN  +  + L  
Sbjct: 202 SVFEGILCKDIVVWAGIVSCY-----VENGCFEDSLQLLSRMGMDGFMPNNYTFDTALKA 256

Query: 182 CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTW 241
              L +    K VH  + K+    D      L+ +Y + GD+ DA K+F E+ + DVV W
Sbjct: 257 SIGLGAFHFAKSVHGQILKTCYELDPRVGVGLLQLYTQLGDMSDAFKVFNEMPKNDVVPW 316

Query: 242 NAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN 301
           + MI+ + Q+G   KA+ +F +M++  + P+  T  ++L  C       LG Q    +V 
Sbjct: 317 SFMIARFCQNGFCNKAVDIFIRMREGFVVPNEFTLSSILNGCAIGKCSGLGEQ-LHGLVV 375

Query: 302 DYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 338
             G          ++D+  +  K+  AV L  ++  K
Sbjct: 376 KVGFDLDVYVSNALIDVYAKCEKMDTAVKLFAELSSK 412



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 71/231 (30%), Positives = 114/231 (49%), Gaps = 18/231 (7%)

Query: 111 YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRP 170
           Y + G +  A ++F   P   VV W+ MI+ + + G+     A D    +RM  G  + P
Sbjct: 292 YTQLGDMSDAFKVFNEMPKNDVVPWSFMIARFCQNGFCNK--AVD--IFIRMREGF-VVP 346

Query: 171 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 230
           N  +LSS+L GC+      LG+Q+H LV K     D      LI +Y KC  ++ A KLF
Sbjct: 347 NEFTLSSILNGCAIGKCSGLGEQLHGLVVKVGFDLDVYVSNALIDVYAKCEKMDTAVKLF 406

Query: 231 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVD 290
            E+  K+VV+WN +I GY   G+G KAL +F +     +    +TF + L AC     ++
Sbjct: 407 AELSSKNVVSWNTVIVGYENLGEGGKALNMFREALRNQVSVTEVTFSSALGACASLASME 466

Query: 291 LGIQYFDSMVNDYGIAAKPDH------YTCMVDLLGRAGKLVEAVDLIKKM 335
           LG+Q        +G+A K ++         ++D+  + G +  A  +  +M
Sbjct: 467 LGVQV-------HGLAIKTNNAKRVAVSNSLIDMYAKCGDIKVAQTVFNEM 510



 Score = 39.7 bits (91), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 56/257 (21%), Positives = 100/257 (38%), Gaps = 51/257 (19%)

Query: 192 KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQH 251
           K +H  + K   C D  A   L++ Y K G  +DA  LF E+  ++ V++  +  GYA  
Sbjct: 69  KAIHCDILKKGSCLDLFATNILLNAYVKAGFDKDALNLFDEMPERNNVSYVTLTQGYA-- 126

Query: 252 GKGEKALRLFDKMKDEG--MKPDSIT-FVALLLACN--------HAGLVDLGIQYFDS-- 298
              +  + L+ ++  EG  + P   T F+ L ++ +        H+ +V LG   +DS  
Sbjct: 127 --CQDPVGLYSRLHREGHELNPHVFTSFLKLFVSLDKAEICWWLHSPIVKLG---YDSNA 181

Query: 299 -----MVNDYGIAAKPDH---------------YTCMVDLLGRAGKLVEAVDLIKKM--- 335
                ++N Y +    D                +  +V      G   +++ L+ +M   
Sbjct: 182 FVGAALINAYSVCGSVDSARSVFEGILCKDIVVWAGIVSCYVENGCFEDSLQLLSRMGMD 241

Query: 336 PFKPQPAIFGTLLSACRVHKRLDLAEFAAMNL----FNLNPANAAGCYVQLANIYAAMKK 391
            F P    F T L A         A+     +    + L+P    G    L  +Y  +  
Sbjct: 242 GFMPNNYTFDTALKASIGLGAFHFAKSVHGQILKTCYELDPRVGVG----LLQLYTQLGD 297

Query: 392 WDDVARIRLSMKENNVV 408
             D  ++   M +N+VV
Sbjct: 298 MSDAFKVFNEMPKNDVV 314


>gi|296085287|emb|CBI29019.3| unnamed protein product [Vitis vinifera]
          Length = 408

 Score =  369 bits (946), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 192/451 (42%), Positives = 265/451 (58%), Gaps = 44/451 (9%)

Query: 96  MPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAED 155
           MPE+N VSW++M+SG+++CG +++A  LF   P + VV+W +M++ Y + G        +
Sbjct: 1   MPERNLVSWNSMLSGFVKCGNVEEAFGLFSEMPCRDVVSWNSMLACYAQCGK-----PNE 55

Query: 156 GLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLIS 215
            L L   M  +G+                                     ++   T L+ 
Sbjct: 56  ALALFDQMQAVGV-------------------------------------NSIVGTALVD 78

Query: 216 MYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSIT 275
           MY KCG +  A ++F  ++ KDV+ WN +I+G A  G  ++A +LF +MK+ G++P+ IT
Sbjct: 79  MYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAILGHVKEAQQLFKEMKEAGVEPNDIT 138

Query: 276 FVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335
           FVA+L AC+HAG+VD G +  D M + YGI  K +HY C++DLL RAG L EA++LI  M
Sbjct: 139 FVAMLSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGLLEEAMELIGTM 198

Query: 336 PFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDV 395
           P +P P   G LL  CR+H   +L E     L NL P + +G Y+ L+NIYAA KKWDD 
Sbjct: 199 PMEPNPCALGALLEGCRIHGNFELGEMVGKRLINLQPCH-SGRYILLSNIYAAAKKWDDA 257

Query: 396 ARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLA-GY 454
            ++R  MK N + K+PG S IE+  +VH F +GD  HPE   I+EKL E+  R+K A GY
Sbjct: 258 RKVRNLMKVNGISKVPGVSVIELKGMVHRFVAGDWSHPESNKIYEKLNEIHTRLKSAIGY 317

Query: 455 VPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKY 514
             D    L  + EE KE  L  HSEKLAIA+GL+ +     IR+ KNLRVC DCH  TK 
Sbjct: 318 SADTGNGLLDMEEEDKEHALAVHSEKLAIAYGLLHLDSKEAIRIVKNLRVCRDCHHVTKL 377

Query: 515 ISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           IS +   EIIVRD  RFHHF+DG CSC D+W
Sbjct: 378 ISKVYGGEIIVRDRNRFHHFEDGECSCLDFW 408



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 68/271 (25%), Positives = 119/271 (43%), Gaps = 41/271 (15%)

Query: 33  IPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDL 92
           +P+ ++VS+N MLS   +   +V  AF  F  +P +D  SWN+M++ + Q     +A  L
Sbjct: 1   MPERNLVSWNSMLSG-FVKCGNVEEAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALAL 59

Query: 93  FLAMPE--KNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVEN 150
           F  M     NS+  +A++  Y +CG++  A ++F     K V+AW  +I+G    G+V  
Sbjct: 60  FDQMQAVGVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAILGHV-- 117

Query: 151 SWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTAL 210
              ++  +L + M   G+ PN  +  ++L  CSH   +  G+++   +  S        +
Sbjct: 118 ---KEAQQLFKEMKEAGVEPNDITFVAMLSACSHAGMVDEGQKLLDCMSSS------YGI 168

Query: 211 TPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMK 270
            P +  Y                          +I   A+ G  E+A+ L   M    M+
Sbjct: 169 EPKVEHY------------------------GCVIDLLARAGLLEEAMELIGTMP---ME 201

Query: 271 PDSITFVALLLACNHAGLVDLGIQYFDSMVN 301
           P+     ALL  C   G  +LG      ++N
Sbjct: 202 PNPCALGALLEGCRIHGNFELGEMVGKRLIN 232


>gi|224092360|ref|XP_002309575.1| predicted protein [Populus trichocarpa]
 gi|222855551|gb|EEE93098.1| predicted protein [Populus trichocarpa]
          Length = 653

 Score =  369 bits (946), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 224/625 (35%), Positives = 325/625 (52%), Gaps = 90/625 (14%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIP----QPDVVSYNIML-SCILLNSDD---- 54
           +  V+W +++ G   Q G   ++  LF K+     +P+  +++  L +C LLN  D    
Sbjct: 36  RNVVSWTALMCGHI-QNGNPLESLLLFSKMGLSGVKPNDFTFSTNLKACGLLNGLDIGRQ 94

Query: 55  -----VVAAFDF------------------------FQRLPIKDTASWNTMISGFVQKKN 85
                V   FD                         F+ +P+++  SWN MI+G+     
Sbjct: 95  IHDICVKTGFDMVNVVGNSIIDMYSKCGRINEAACMFEVMPVRNLISWNAMIAGYTVAGF 154

Query: 86  MAKARDLFLAMPEK-----------------------------------------NSVSW 104
             KA  LF  M E                                          N+   
Sbjct: 155 CEKALVLFQKMQEVGGFLDEFTFTSTLKACSDLGAIKEGNQIHAFLITGGFLYSVNTAVA 214

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI 164
            A+I  Y++CG+L  A  +F     K V++WTA+I GY + G +  S     ++L R + 
Sbjct: 215 GALIDLYVKCGKLFMARRVFSHIEEKHVISWTALILGYAQEGNLAES-----MELFRQLR 269

Query: 165 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 224
              I+ +   LSS++   +  + +Q GKQ+H    K P   D +    ++ MY KCG + 
Sbjct: 270 ESSIQVDGFILSSMMGVFADFALVQQGKQMHAFAIKVPSGVDISVCNSILDMYLKCGMIN 329

Query: 225 DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 284
           +A +LF E+  ++V++W  MI+GY +HG G++A+RLFD+M+ +  +PD +T++A+LL C+
Sbjct: 330 EAERLFSEMPARNVISWTVMITGYGKHGLGKEAIRLFDEMQLDSTEPDDVTYLAVLLGCS 389

Query: 285 HAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIF 344
           H+GLV+ G +YF  + + +GI A+ +HY CMVDLLGRAG+L EA +L+  MP +    I+
Sbjct: 390 HSGLVEKGQEYFSRLCSYHGIKARVEHYACMVDLLGRAGRLKEAKNLVDSMPLEANVGIW 449

Query: 345 GTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKE 404
            TLLSACRVH  L+L +     L  L+  N    YV ++NIYA    W +  RIR  +K 
Sbjct: 450 QTLLSACRVHGDLELGKEVGGILLRLDSENPVN-YVMMSNIYADAGYWKECERIRELVKS 508

Query: 405 NNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLA-GYVPDLEFALH 463
             + K  G SW+E+   VH F  GD  HP    IHE LKE+E+RMK   GYV  +++ALH
Sbjct: 509 KKLKKEAGRSWVEIDKEVHFFYGGDDTHPLTEKIHEILKEMERRMKEELGYVYGVKYALH 568

Query: 464 AVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTP---IRVFKNLRVCGDCHRATKYISAIEK 520
            V EE K   L  HSEKLAI   L+   L      IRVFKNLRVCGDCH   K +S I +
Sbjct: 569 DVEEESKMDNLRVHSEKLAIGLALVCGGLEEGRKVIRVFKNLRVCGDCHEFIKGLSKILR 628

Query: 521 REIIVRDTTRFHHFKDGTCSCGDYW 545
              +VRD  RFH F+DG CSC DYW
Sbjct: 629 VVFVVRDANRFHRFEDGLCSCRDYW 653



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 83/328 (25%), Positives = 165/328 (50%), Gaps = 21/328 (6%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRL------PIKDTASWN 74
           G+L  A ++FD++ + +VVS+  ++ C  + + + + +   F ++      P   T S N
Sbjct: 21  GRLGVACDVFDRMLKRNVVSWTALM-CGHIQNGNPLESLLLFSKMGLSGVKPNDFTFSTN 79

Query: 75  TMISGFVQKKNMAKA-RDLFLAMP-EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSV 132
               G +   ++ +   D+ +    +  +V  +++I  Y +CG++++A  +F+V PV+++
Sbjct: 80  LKACGLLNGLDIGRQIHDICVKTGFDMVNVVGNSIIDMYSKCGRINEAACMFEVMPVRNL 139

Query: 133 VAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGK 192
           ++W AMI+GY   G+ E +     L L + M  +G   +  + +S L  CS L +++ G 
Sbjct: 140 ISWNAMIAGYTVAGFCEKA-----LVLFQKMQEVGGFLDEFTFTSTLKACSDLGAIKEGN 194

Query: 193 QVHQLVFKSPLCK--DTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQ 250
           Q+H  +         +T     LI +Y KCG L  A ++F  I+ K V++W A+I GYAQ
Sbjct: 195 QIHAFLITGGFLYSVNTAVAGALIDLYVKCGKLFMARRVFSHIEEKHVISWTALILGYAQ 254

Query: 251 HGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPD 310
            G   +++ LF ++++  ++ D     +++       LV  G Q     +    + +  D
Sbjct: 255 EGNLAESMELFRQLRESSIQVDGFILSSMMGVFADFALVQQGKQMHAFAIK---VPSGVD 311

Query: 311 HYTC--MVDLLGRAGKLVEAVDLIKKMP 336
              C  ++D+  + G + EA  L  +MP
Sbjct: 312 ISVCNSILDMYLKCGMINEAERLFSEMP 339



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 69/223 (30%), Positives = 116/223 (52%), Gaps = 6/223 (2%)

Query: 107 MISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGL 166
           +I  Y +CG+L  A ++F     ++VV+WTA++ G+     ++N    + L L   M   
Sbjct: 13  LIVMYGKCGRLGVACDVFDRMLKRNVVSWTALMCGH-----IQNGNPLESLLLFSKMGLS 67

Query: 167 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 226
           G++PN  + S+ L  C  L+ L +G+Q+H +  K+           +I MY KCG + +A
Sbjct: 68  GVKPNDFTFSTNLKACGLLNGLDIGRQIHDICVKTGFDMVNVVGNSIIDMYSKCGRINEA 127

Query: 227 CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHA 286
             +F  +  +++++WNAMI+GY   G  EKAL LF KM++ G   D  TF + L AC+  
Sbjct: 128 ACMFEVMPVRNLISWNAMIAGYTVAGFCEKALVLFQKMQEVGGFLDEFTFTSTLKACSDL 187

Query: 287 GLVDLGIQYFDSMVN-DYGIAAKPDHYTCMVDLLGRAGKLVEA 328
           G +  G Q    ++   +  +        ++DL  + GKL  A
Sbjct: 188 GAIKEGNQIHAFLITGGFLYSVNTAVAGALIDLYVKCGKLFMA 230


>gi|297741829|emb|CBI33142.3| unnamed protein product [Vitis vinifera]
          Length = 1198

 Score =  368 bits (945), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 198/504 (39%), Positives = 292/504 (57%), Gaps = 62/504 (12%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLS-CILLNSDDVVAAFDFF 62
           + TV+WNS++ G+ K  G   +++ LF  +P  +VVS+N M++ CI    + +  A+ +F
Sbjct: 4   RDTVSWNSIITGYWKN-GCFDESKRLFGLMPTKNVVSWNSMIAGCI--EDERIDEAWQYF 60

Query: 63  QRLPIKDTASWNTMISGFVQ---------------KKN----------------MAKARD 91
           Q +P ++TASWN MISG V+               ++N                + +AR 
Sbjct: 61  QAMPQRNTASWNAMISGLVRYDRVEEASRLFEEMPRRNVISYTAMVDGYAKIGEIEQARA 120

Query: 92  LFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMK------- 144
           LF  MP+KN VSW+ MISGY+E G+ D+A  LF+  P K++VA TAMI+GY K       
Sbjct: 121 LFNCMPQKNVVSWTVMISGYVENGKFDEAENLFEQMPDKNIVAMTAMITGYCKEGKTDKA 180

Query: 145 -------------------FGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHL 185
                               GY +N   E+ LKL   M+ +G++P+ S+L SVL  CS L
Sbjct: 181 KILFDQIPCRDLASWNAMITGYAQNGSGEEALKLHSQMLKMGMQPDHSTLISVLTACSSL 240

Query: 186 SSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMI 245
           +SLQ G++ H LV KS      +    LI+MYCKCG + D+   F +I   DVV+WNAMI
Sbjct: 241 ASLQEGRKTHVLVLKSGYESRISICNALITMYCKCGSILDSELAFRQIDHPDVVSWNAMI 300

Query: 246 SGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGI 305
           + +A+HG  ++AL  F +M+   ++PD ITF++LL AC HAG V   + +F+SM+  Y I
Sbjct: 301 AAFARHGFYDRALASFGEMRSNRVEPDGITFLSLLSACGHAGKVHESLNWFNSMIESYKI 360

Query: 306 AAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAM 365
             +P+H+ C+VD+L R G++ +A  +I++MPF+    I+G LL+AC VH  + L E AA 
Sbjct: 361 VPRPEHFACLVDILSRGGQVEKAYKIIQEMPFEADCGIWGALLAACHVHLNVKLGELAAK 420

Query: 366 NLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEF 425
            +  L P N +G YV L+NIYAA   W +V R+R  M+E  V K P YSW+E+   VH F
Sbjct: 421 KIVELEPQN-SGAYVVLSNIYAAAGMWGEVTRVRGLMREQGVKKQPAYSWMEIDNKVHFF 479

Query: 426 RSGDRVHPELVSIHEKLKELEKRM 449
              D  HPE+  I  +LK ++ +M
Sbjct: 480 LGDDASHPEIHRIRLELKGMKLQM 503



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 87/256 (33%), Positives = 150/256 (58%), Gaps = 22/256 (8%)

Query: 33  IPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRL----PIKDTASWNTMISGFVQKKNMAK 88
           +P  D VS+N +++    N       FD  +RL    P K+  SWN+MI+G ++ + + +
Sbjct: 1   MPHRDTVSWNSIITGYWKN-----GCFDESKRLFGLMPTKNVVSWNSMIAGCIEDERIDE 55

Query: 89  ARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYV 148
           A   F AMP++N+ SW+AMISG +   ++++A  LF+  P ++V+++TAM+ GY K G +
Sbjct: 56  AWQYFQAMPQRNTASWNAMISGLVRYDRVEEASRLFEEMPRRNVISYTAMVDGYAKIGEI 115

Query: 149 ENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTT 208
           E + A     L   M      P  + +S  ++   ++ + +  +  +  +F+    K+  
Sbjct: 116 EQARA-----LFNCM------PQKNVVSWTVMISGYVENGKFDEAEN--LFEQMPDKNIV 162

Query: 209 ALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEG 268
           A+T +I+ YCK G  + A  LF +I  +D+ +WNAMI+GYAQ+G GE+AL+L  +M   G
Sbjct: 163 AMTAMITGYCKEGKTDKAKILFDQIPCRDLASWNAMITGYAQNGSGEEALKLHSQMLKMG 222

Query: 269 MKPDSITFVALLLACN 284
           M+PD  T +++L AC+
Sbjct: 223 MQPDHSTLISVLTACS 238


>gi|357454909|ref|XP_003597735.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87240430|gb|ABD32288.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355486783|gb|AES67986.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 620

 Score =  368 bits (945), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 209/539 (38%), Positives = 307/539 (56%), Gaps = 32/539 (5%)

Query: 23  LKDAQELFDKIPQPDVVSYNIMLSCILLNS--DDVVAAF----DFFQR-----LP--IKD 69
           L +A+ LFDKIP+ ++  +N+++     N   D+ +  +    D+  R     LP  +K 
Sbjct: 98  LLNARNLFDKIPKQNLFLWNVLIRGYAWNGPHDNAIILYHKMLDYGLRPDNFTLPFVLKA 157

Query: 70  TASWNTMISGFVQKKNMAKA---RDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKV 126
            ++ + +  G    + + K+   RDLF+          +A+I  Y +CG +  A  +F  
Sbjct: 158 CSALSAIGEGRSIHEYVIKSGWERDLFVG---------AALIDMYAKCGCVMDAGRVFDK 208

Query: 127 APVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLS 186
             V+  V W +M++ Y + G+ + S     + L R M   G+RP  ++L +V+   + ++
Sbjct: 209 IVVRDAVLWNSMLAAYAQNGHPDES-----ISLCREMAANGVRPTEATLVTVISSSADVA 263

Query: 187 SLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMIS 246
            L  G+++H   ++     +    T LI MY KCG ++ A  LF  ++ K VV+WNA+I+
Sbjct: 264 CLPYGREIHGFGWRHGFQSNDKVKTALIDMYAKCGSVKVALALFERLREKRVVSWNAIIT 323

Query: 247 GYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIA 306
           GYA HG    AL LFDKM+ E  +PD ITFV +L AC+   L+D G   ++ MV DYGI 
Sbjct: 324 GYAMHGLAVGALDLFDKMRKED-RPDHITFVGVLAACSRGRLLDEGRALYNLMVRDYGIT 382

Query: 307 AKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMN 366
               HYTCM+DLLG  G+L EA DLI+ M  KP   ++G LL++C++H  ++LAE A   
Sbjct: 383 PTVQHYTCMIDLLGHCGQLDEAYDLIRNMSVKPDSGVWGALLNSCKIHGNVELAELALEK 442

Query: 367 LFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFR 426
           L  L P ++ G YV LAN+YA   KW+ V ++R  M +  + K    SWIEV   V+ F 
Sbjct: 443 LIELEPDDS-GNYVILANMYAQSGKWEGVEKLRQVMIDKRIKKNIACSWIEVKNKVYAFL 501

Query: 427 SGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFG 486
           +GD  H    +I+ +LK LE  M  AGY PD     H V E+ K  ++  HSE+LAIAFG
Sbjct: 502 AGDVSHSNSDAIYAELKRLEGLMHEAGYAPDTGSVFHDVEEDEKTSMVCSHSERLAIAFG 561

Query: 487 LIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           LI    GT + + KNLR+C DCH A K+IS I +REI VRD  R+H FK G CSCGD+W
Sbjct: 562 LISTSPGTRLLITKNLRICEDCHVAIKFISKIMEREITVRDVNRYHSFKHGMCSCGDHW 620



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 63/231 (27%), Positives = 115/231 (49%), Gaps = 6/231 (2%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI 164
           + ++  Y     L  A  LF   P +++  W  +I GY   G  +N+     + L   M+
Sbjct: 86  TKLVHLYAVSNSLLNARNLFDKIPKQNLFLWNVLIRGYAWNGPHDNA-----IILYHKML 140

Query: 165 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 224
             G+RP+  +L  VL  CS LS++  G+ +H+ V KS   +D      LI MY KCG + 
Sbjct: 141 DYGLRPDNFTLPFVLKACSALSAIGEGRSIHEYVIKSGWERDLFVGAALIDMYAKCGCVM 200

Query: 225 DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 284
           DA ++F +I  +D V WN+M++ YAQ+G  ++++ L  +M   G++P   T V ++ +  
Sbjct: 201 DAGRVFDKIVVRDAVLWNSMLAAYAQNGHPDESISLCREMAANGVRPTEATLVTVISSSA 260

Query: 285 HAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335
               +  G +        +G  +     T ++D+  + G +  A+ L +++
Sbjct: 261 DVACLPYGRE-IHGFGWRHGFQSNDKVKTALIDMYAKCGSVKVALALFERL 310



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 64/280 (22%), Positives = 129/280 (46%), Gaps = 28/280 (10%)

Query: 176 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR 235
           +S+L  C    +L  GKQ+H   +   +  +    T L+ +Y     L +A  LF +I +
Sbjct: 51  TSLLQSCIDSKALNPGKQLHAQFYHLGIAYNQDLATKLVHLYAVSNSLLNARNLFDKIPK 110

Query: 236 KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQY 295
           +++  WN +I GYA +G  + A+ L+ KM D G++PD+ T   +L AC+    +  G   
Sbjct: 111 QNLFLWNVLIRGYAWNGPHDNAIILYHKMLDYGLRPDNFTLPFVLKACSALSAIGEG--- 167

Query: 296 FDSMVNDYGIAA--KPDHY--TCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSAC 351
               +++Y I +  + D +    ++D+  + G +++A  +  K+  +    ++ ++L+A 
Sbjct: 168 --RSIHEYVIKSGWERDLFVGAALIDMYAKCGCVMDAGRVFDKIVVR-DAVLWNSMLAAY 224

Query: 352 RVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMP 411
             +   D     +++L     AN  G     A +   +    DVA +          ++ 
Sbjct: 225 AQNGHPD----ESISLCREMAAN--GVRPTEATLVTVISSSADVACLPYGR------EIH 272

Query: 412 GYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKL 451
           G+ W       H F+S D+V   L+ ++ K   ++  + L
Sbjct: 273 GFGW------RHGFQSNDKVKTALIDMYAKCGSVKVALAL 306



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 70/272 (25%), Positives = 113/272 (41%), Gaps = 35/272 (12%)

Query: 3   VKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFF 62
           V+  V WNS+LA +A Q G   ++  L  ++    V      L  ++ +S DV       
Sbjct: 211 VRDAVLWNSMLAAYA-QNGHPDESISLCREMAANGVRPTEATLVTVISSSADVAC----- 264

Query: 63  QRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVE 122
             LP      +   I GF  +              + N    +A+I  Y +CG +  A+ 
Sbjct: 265 --LP------YGREIHGFGWRHGF-----------QSNDKVKTALIDMYAKCGSVKVALA 305

Query: 123 LFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGC 182
           LF+    K VV+W A+I+GY   G      A   L L   M     RP+  +   VL  C
Sbjct: 306 LFERLREKRVVSWNAIITGYAMHGL-----AVGALDLFDKMRKED-RPDHITFVGVLAAC 359

Query: 183 SHLSSLQLGKQVHQLVFKS-PLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK-DVVT 240
           S    L  G+ ++ L+ +   +       T +I +   CG L++A  L   +  K D   
Sbjct: 360 SRGRLLDEGRALYNLMVRDYGITPTVQHYTCMIDLLGHCGQLDEAYDLIRNMSVKPDSGV 419

Query: 241 WNAMISGYAQHGKGEKALRLFDKMKDEGMKPD 272
           W A+++    HG  E A    +K+ +  ++PD
Sbjct: 420 WGALLNSCKIHGNVELAELALEKLIE--LEPD 449


>gi|125546238|gb|EAY92377.1| hypothetical protein OsI_14107 [Oryza sativa Indica Group]
          Length = 602

 Score =  368 bits (945), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 176/431 (40%), Positives = 270/431 (62%), Gaps = 6/431 (1%)

Query: 115 GQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASS 174
           G L  A  +F   P +S V W+AMI GY++ G      + D ++L R M   G++ +  +
Sbjct: 178 GFLGDARNVFDRMPKESAVTWSAMIGGYVRGGL-----SSDAVELFREMQANGVQADEVT 232

Query: 175 LSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ 234
           +  VL   + L +L+L + V + V +  + K  T    LI    KCGD++ A  +F  +Q
Sbjct: 233 VIGVLAAATDLGALELARWVRRFVEREGIGKSVTLCNALIDTLAKCGDVDGAVAVFEGMQ 292

Query: 235 RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ 294
           ++ VV+W ++I   A  G+G++A+R+F++MK  G+ PD + F+ +L AC+HAG+VD G  
Sbjct: 293 QRSVVSWTSVIDALAMEGRGKEAVRVFEEMKVAGVPPDDVAFIGVLTACSHAGMVDEGCG 352

Query: 295 YFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVH 354
           YFD+M  +YGI  K +HY CMVD+ GRAG +  A++ ++ MP +P P I+ +L+SACR H
Sbjct: 353 YFDAMKVEYGIEPKIEHYGCMVDMFGRAGMVERAMEFVRTMPIQPNPVIWRSLVSACRAH 412

Query: 355 KRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYS 414
            RL+L E    +L +  PA+ A  Y+ L+N++A  ++W + + IR  M +  + K+PG S
Sbjct: 413 GRLELGESITRSLLHEYPAHEAN-YIMLSNVFALTQRWKEKSEIRREMSKRGIKKVPGCS 471

Query: 415 WIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLL 474
            +E+   VHEF +GD  HP+   I+  ++E+ + ++  G++      L  + EE KE  L
Sbjct: 472 IVELDGEVHEFIAGDESHPQYKDIYRMVEEMARELRRVGHIAATSEVLLDLDEEDKEGAL 531

Query: 475 LFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHF 534
            +HSEKLAIAF L++ P GT +RV KNLRVC DCH A K IS + +REI+VRD +RFH F
Sbjct: 532 QWHSEKLAIAFALLRTPPGTQVRVVKNLRVCSDCHAAIKCISQVYRREIVVRDRSRFHRF 591

Query: 535 KDGTCSCGDYW 545
           KDG+CSC D+W
Sbjct: 592 KDGSCSCKDFW 602



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 64/294 (21%), Positives = 124/294 (42%), Gaps = 53/294 (18%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCIL---LNSDDVVAAFDFFQRLPIKDTASWNTMI 77
           G L DA+ +FD++P+   V+++ M+   +   L+SD    A + F+ +      +    +
Sbjct: 178 GFLGDARNVFDRMPKESAVTWSAMIGGYVRGGLSSD----AVELFREMQANGVQADEVTV 233

Query: 78  SGFVQKKNMAKARDL---FLAMPEKNSVSWS-----AMISGYIECGQLDKAVELFKVAPV 129
            G +       A +L        E+  +  S     A+I    +CG +D AV +F+    
Sbjct: 234 IGVLAAATDLGALELARWVRRFVEREGIGKSVTLCNALIDTLAKCGDVDGAVAVFEGMQQ 293

Query: 130 KSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQ 189
           +SVV+WT++I      G       ++ +++   M   G+ P+  +   VL  CSH   + 
Sbjct: 294 RSVVSWTSVIDALAMEGR-----GKEAVRVFEEMKVAGVPPDDVAFIGVLTACSHAGMVD 348

Query: 190 LGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYA 249
            G                            CG   DA K+   I+ K +  +  M+  + 
Sbjct: 349 EG----------------------------CGYF-DAMKVEYGIEPK-IEHYGCMVDMFG 378

Query: 250 QHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDY 303
           + G  E+A+     M    ++P+ + + +L+ AC   G ++LG     S++++Y
Sbjct: 379 RAGMVERAMEFVRTMP---IQPNPVIWRSLVSACRAHGRLELGESITRSLLHEY 429


>gi|358345892|ref|XP_003637008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355502943|gb|AES84146.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 647

 Score =  368 bits (945), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 219/591 (37%), Positives = 320/591 (54%), Gaps = 76/591 (12%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNS--DDVVAAFDFFQRLPI 67
           N+++  +AK  GK++DA ++F+++   DVV++N M++    N   +D ++ F   +   I
Sbjct: 78  NALVDMYAKC-GKMEDASKVFERMRFKDVVTWNAMVTGYSQNGRFEDALSLFGKMREEKI 136

Query: 68  K-DTASWNTMISGFVQKKNMAKARDLFLAM------PE--------------------KN 100
           + D  +W+++ISG+ Q+    +A D+F  M      P                     K 
Sbjct: 137 ELDVVTWSSVISGYAQRGFGCEAMDVFRQMCGCRCRPNVVTLMSLLSACASVGALLHGKE 196

Query: 101 SVSWS--------------------AMISGYIECGQLDKAVELF-KVAPV-KSVVAWTAM 138
           +  +S                    A+I  Y +C  L+ A  +F ++ P  + VV WT M
Sbjct: 197 THCYSVKFILKGEHNDDTDDLAVINALIDMYAKCKSLEVARAMFDEICPKDRDVVTWTVM 256

Query: 139 ISGYMKFGYVENSWAEDGLKLLRMMIGLG--IRPNASSLSSVLLGCSHLSSLQLGKQVHQ 196
           I GY + G      A   L+L   M  +   I PN  ++S VL+ C+ L++L+ GKQ+H 
Sbjct: 257 IGGYAQHGD-----ANHALQLFSEMFKIDNCIVPNDFTISCVLMACARLAALKFGKQIHA 311

Query: 197 LVFKSPLCKDTTALTP--LISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKG 254
            V +              LI MY K GD++ A  +F  + +++ V+W ++++GY  HG  
Sbjct: 312 YVLRRSRIDSDVLFVANCLIDMYSKSGDVDTAQVVFDSMSKRNAVSWTSLLTGYGMHGA- 370

Query: 255 EKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTC 314
             AL L           D ITF+ +L AC+H+G+VD GI  F  M  D+ +    +HY C
Sbjct: 371 --ALVL-----------DGITFLVVLYACSHSGMVDRGIDLFYRMSKDFVVDPGVEHYAC 417

Query: 315 MVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPAN 374
           M DL GRAG+L EA  LI  M  +P P ++  LLSACR H   +LAEFAA  L  L   N
Sbjct: 418 MADLFGRAGRLCEATRLINDMSMEPTPVVWIALLSACRTHSNEELAEFAAKKLLELKADN 477

Query: 375 AAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPE 434
             G Y  L+NIYA  ++W DVARIR  MK   + K PG+SW++    +  F  GDR H +
Sbjct: 478 D-GTYTLLSNIYANARRWKDVARIRYLMKRTGIKKRPGWSWVKGRKGMETFYVGDRTHLQ 536

Query: 435 LVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGT 494
              I+E L +L KR+K  GYVP   F+LH V +E K   LL HSEKLA+A+ ++ +P G 
Sbjct: 537 SQKIYETLADLIKRIKAIGYVPQTNFSLHDVDDEEKGDQLLEHSEKLALAYAILTLPPGA 596

Query: 495 PIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           PIR+ KNLR+CGD H A  YIS I + EII+RD++RFH FK+G+CSC  YW
Sbjct: 597 PIRITKNLRICGDFHSAITYISMIVEHEIILRDSSRFHQFKNGSCSCKGYW 647



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 106/366 (28%), Positives = 175/366 (47%), Gaps = 37/366 (10%)

Query: 6   TVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCI-LLNSDDVVAAFDFFQR 64
           +V+WNS+++ ++       DA  LF ++     V Y I+   + ++N   V     FF  
Sbjct: 23  SVSWNSIVSVYSHCFVP-NDAVFLFREM----TVGYGILPDTVGVVNILPVSGFLGFFVG 77

Query: 65  LPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELF 124
                    N ++  + +   M  A  +F  M  K+ V+W+AM++GY + G+ + A+ LF
Sbjct: 78  ---------NALVDMYAKCGKMEDASKVFERMRFKDVVTWNAMVTGYSQNGRFEDALSLF 128

Query: 125 -KVAPVK---SVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLL 180
            K+   K    VV W+++ISGY + G+       + + + R M G   RPN  +L S+L 
Sbjct: 129 GKMREEKIELDVVTWSSVISGYAQRGF-----GCEAMDVFRQMCGCRCRPNVVTLMSLLS 183

Query: 181 GCSHLSSLQLGKQVH----QLVFKSPLCKDT---TALTPLISMYCKCGDLEDACKLFLEI 233
            C+ + +L  GK+ H    + + K     DT     +  LI MY KC  LE A  +F EI
Sbjct: 184 ACASVGALLHGKETHCYSVKFILKGEHNDDTDDLAVINALIDMYAKCKSLEVARAMFDEI 243

Query: 234 --QRKDVVTWNAMISGYAQHGKGEKALRLFDKM--KDEGMKPDSITFVALLLACNHAGLV 289
             + +DVVTW  MI GYAQHG    AL+LF +M   D  + P+  T   +L+AC     +
Sbjct: 244 CPKDRDVVTWTVMIGGYAQHGDANHALQLFSEMFKIDNCIVPNDFTISCVLMACARLAAL 303

Query: 290 DLGIQYFDSMVNDYGIAAKPDHY-TCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLL 348
             G Q    ++    I +       C++D+  ++G +  A  +   M  K     + +LL
Sbjct: 304 KFGKQIHAYVLRRSRIDSDVLFVANCLIDMYSKSGDVDTAQVVFDSMS-KRNAVSWTSLL 362

Query: 349 SACRVH 354
           +   +H
Sbjct: 363 TGYGMH 368


>gi|356543252|ref|XP_003540076.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 934

 Score =  368 bits (945), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 196/534 (36%), Positives = 305/534 (57%), Gaps = 16/534 (2%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDD--VVAAFDFFQR--LPIKDTASWNTM 76
           G +  AQ +   +P  D V++N ++     N +    + AF+  +   +P+      N +
Sbjct: 408 GSMAAAQRVCKIMPDRDEVTWNALIGGHADNKEPNAAIEAFNLLREEGVPVNYITIVN-L 466

Query: 77  ISGFVQKKN-----MAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKS 131
           +S F+   +     M     + +A  E  +   S++I+ Y +CG L+ +  +F V   K+
Sbjct: 467 LSAFLSPDDLLDHGMPIHAHIVVAGFELETFVQSSLITMYAQCGDLNTSNYIFDVLANKN 526

Query: 132 VVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLG 191
              W A++S    +G       E+ LKL+  M   GI  +  S S       +L+ L  G
Sbjct: 527 SSTWNAILSANAHYGP-----GEEALKLIIKMRNDGIHLDQFSFSVAHAIIGNLTLLDEG 581

Query: 192 KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQH 251
           +Q+H L+ K     +   L   + MY KCG+++D  ++  + + +   +WN +IS  A+H
Sbjct: 582 QQLHSLIIKHGFESNDYVLNATMDMYGKCGEIDDVFRILPQPRSRSQRSWNILISALARH 641

Query: 252 GKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDH 311
           G  ++A   F +M D G++PD +TFV+LL AC+H GLVD G+ YF SM   +G+    +H
Sbjct: 642 GFFQQAREAFHEMLDLGLRPDHVTFVSLLSACSHGGLVDEGLAYFSSMSTKFGVPTGIEH 701

Query: 312 YTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLN 371
             C++DLLGRAGKL EA + I KMP  P   ++ +LL+AC++H  L+LA  AA  LF L+
Sbjct: 702 CVCIIDLLGRAGKLTEAENFINKMPVPPTDLVWRSLLAACKIHGNLELARKAADRLFELD 761

Query: 372 PANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRV 431
            ++ +  YV  +N+ A+ ++W DV  +R  M+ +N+ K P  SW+++   V  F  GD+ 
Sbjct: 762 SSDDSA-YVLYSNVCASTRRWRDVENVRKQMESHNIKKKPACSWVKLKNQVTTFGMGDQY 820

Query: 432 HPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVP 491
           HP+   I+ KL+EL+K ++ AGY+PD  ++L    EE KE  L  HSE++A+AFGLI   
Sbjct: 821 HPQNAEIYAKLEELKKIIREAGYMPDTSYSLQDTDEEQKEHNLWNHSERIALAFGLINSS 880

Query: 492 LGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
            G+P+R+FKNLRVCGDCH   K +S I  R+II+RD  RFHHF  G CSC DYW
Sbjct: 881 EGSPLRIFKNLRVCGDCHSVFKMVSQIIGRKIILRDAYRFHHFSSGKCSCSDYW 934



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 105/442 (23%), Positives = 192/442 (43%), Gaps = 55/442 (12%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
           NS+L+ ++ Q GK +DA+ +F K+ + D++S+N M++  + N +   A     + L  + 
Sbjct: 300 NSLLSMYS-QAGKSEDAEFVFHKMRERDLISWNSMMASHVDNGNYPRALELLIEMLQTRK 358

Query: 70  TASWNTMISGFVQKKNMAKARD----LFLAMPEKNSVSWSAMISGYIECGQLDKAVELFK 125
             ++ T  +      N+   +     + L     N +  +A+++ Y + G +  A  + K
Sbjct: 359 ATNYVTFTTALSACYNLETLKIVHAFVILLGLHHNLIIGNALVTMYGKFGSMAAAQRVCK 418

Query: 126 VAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLG-CSH 184
           + P +  V W A+I      G+ +N      ++   ++   G+  N  ++ ++L    S 
Sbjct: 419 IMPDRDEVTWNALIG-----GHADNKEPNAAIEAFNLLREEGVPVNYITIVNLLSAFLSP 473

Query: 185 LSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAM 244
              L  G  +H  +  +    +T   + LI+MY +CGDL  +  +F  +  K+  TWNA+
Sbjct: 474 DDLLDHGMPIHAHIVVAGFELETFVQSSLITMYAQCGDLNTSNYIFDVLANKNSSTWNAI 533

Query: 245 ISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV---- 300
           +S  A +G GE+AL+L  KM+++G+  D  +F        +  L+D G Q    ++    
Sbjct: 534 LSANAHYGPGEEALKLIIKMRNDGIHLDQFSFSVAHAIIGNLTLLDEGQQLHSLIIKHGF 593

Query: 301 --NDYGIAAKPDHY------------------------TCMVDLLGRAGKLVEAVDLIKK 334
             NDY + A  D Y                          ++  L R G   +A +   +
Sbjct: 594 ESNDYVLNATMDMYGKCGEIDDVFRILPQPRSRSQRSWNILISALARHGFFQQAREAFHE 653

Query: 335 M---PFKPQPAIFGTLLSACRVHKRLD--LAEFAAMNLFNLNPANAAGCYVQLANIYAAM 389
           M     +P    F +LLSAC     +D  LA F++M+     P     C   +  +  A 
Sbjct: 654 MLDLGLRPDHVTFVSLLSACSHGGLVDEGLAYFSSMSTKFGVPTGIEHCVCIIDLLGRAG 713

Query: 390 KKWDDVARIRLSMKENNVVKMP 411
           K         L+  EN + KMP
Sbjct: 714 K---------LTEAENFINKMP 726



 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 79/314 (25%), Positives = 142/314 (45%), Gaps = 46/314 (14%)

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISG------- 110
           F ++P ++ ASWN ++SGFV+     KA   F  M E     +S   +++++        
Sbjct: 15  FDKMPERNEASWNNLMSGFVRVGWYQKAMQFFCHMLEHGVRPSSYVAASLVTACDRSGCM 74

Query: 111 ----------YIEC-------------------GQLDKAVELFKVAPVKSVVAWTAMISG 141
                      I+C                   G + +   +FK     ++V+WT+++ G
Sbjct: 75  TEGAFQVHAHVIKCGLACDVFVGTSLLHFYGTFGWVAEVDMVFKEIEEPNIVSWTSLMVG 134

Query: 142 YMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKS 201
           Y   G V     ++ + + R +   G+  N +++++V+  C  L    LG QV   V KS
Sbjct: 135 YAYNGCV-----KEVMSVYRRLRRDGVYCNENAMATVIRSCGVLVDKMLGYQVLGSVIKS 189

Query: 202 PLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLF 261
            L    +    LISM+  C  +E+A  +F +++ +D ++WN++I+    +G  EK+L  F
Sbjct: 190 GLDTTVSVANSLISMFGNCDSIEEASCVFDDMKERDTISWNSIITASVHNGHCEKSLEYF 249

Query: 262 DKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGR 321
            +M+    K D IT  ALL  C  A  +  G +    MV   G+ +       ++ +  +
Sbjct: 250 SQMRYTHAKTDYITISALLPVCGSAQNLRWG-RGLHGMVVKSGLESNVCVCNSLLSMYSQ 308

Query: 322 AGKLVEAVDLIKKM 335
           AGK  +A  +  KM
Sbjct: 309 AGKSEDAEFVFHKM 322



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 90/409 (22%), Positives = 181/409 (44%), Gaps = 78/409 (19%)

Query: 7   VNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP 66
           V+W S++ G+A   G +K+   ++ ++ +  V      ++ ++ +   +V     +Q L 
Sbjct: 126 VSWTSLMVGYAYN-GCVKEVMSVYRRLRRDGVYCNENAMATVIRSCGVLVDKMLGYQVLG 184

Query: 67  ------IKDTAS-WNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDK 119
                 +  T S  N++IS F    ++ +A  +F  M E++++SW+++I+  +  G  +K
Sbjct: 185 SVIKSGLDTTVSVANSLISMFGNCDSIEEASCVFDDMKERDTISWNSIITASVHNGHCEK 244

Query: 120 AVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVL 179
           ++E F           + M   + K  Y+                         ++S++L
Sbjct: 245 SLEYF-----------SQMRYTHAKTDYI-------------------------TISALL 268

Query: 180 LGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVV 239
             C    +L+ G+ +H +V KS L  +      L+SMY + G  EDA  +F +++ +D++
Sbjct: 269 PVCGSAQNLRWGRGLHGMVVKSGLESNVCVCNSLLSMYSQAGKSEDAEFVFHKMRERDLI 328

Query: 240 TWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN--------HAGLVDL 291
           +WN+M++ +  +G   +AL L  +M       + +TF   L AC         HA ++ L
Sbjct: 329 SWNSMMASHVDNGNYPRALELLIEMLQTRKATNYVTFTTALSACYNLETLKIVHAFVILL 388

Query: 292 GIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSAC 351
           G+ +   + N             +V + G+ G +  A  + K MP + +   +  L+   
Sbjct: 389 GLHHNLIIGN------------ALVTMYGKFGSMAAAQRVCKIMPDRDE-VTWNALIGGH 435

Query: 352 RVHKRLDLAEFAAMNLFNL-----NPANAAGCYVQLANIYAAMKKWDDV 395
             +K  +    AA+  FNL      P N    Y+ + N+ +A    DD+
Sbjct: 436 ADNKEPN----AAIEAFNLLREEGVPVN----YITIVNLLSAFLSPDDL 476



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 50/221 (22%), Positives = 106/221 (47%), Gaps = 11/221 (4%)

Query: 111 YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRP 170
           Y + G ++ A  +F   P ++  +W  ++SG+++ G     W +  ++    M+  G+RP
Sbjct: 2   YSKFGSIEHAQHVFDKMPERNEASWNNLMSGFVRVG-----WYQKAMQFFCHMLEHGVRP 56

Query: 171 NASSLSSVLLGCSHLSSLQLGK-QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 229
           ++   +S++  C     +  G  QVH  V K  L  D    T L+  Y   G + +   +
Sbjct: 57  SSYVAASLVTACDRSGCMTEGAFQVHAHVIKCGLACDVFVGTSLLHFYGTFGWVAEVDMV 116

Query: 230 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLV 289
           F EI+  ++V+W +++ GYA +G  ++ + ++ +++ +G+  +      ++ +C    LV
Sbjct: 117 FKEIEEPNIVSWTSLMVGYAYNGCVKEVMSVYRRLRRDGVYCNENAMATVIRSC--GVLV 174

Query: 290 D--LGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEA 328
           D  LG Q   S++   G+         ++ + G    + EA
Sbjct: 175 DKMLGYQVLGSVIKS-GLDTTVSVANSLISMFGNCDSIEEA 214



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 66/288 (22%), Positives = 136/288 (47%), Gaps = 17/288 (5%)

Query: 3   VKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFF 62
           + TTV+  + L         +++A  +FD + + D +S+N +++  + N      + ++F
Sbjct: 191 LDTTVSVANSLISMFGNCDSIEEASCVFDDMKERDTISWNSIITASVHNGH-CEKSLEYF 249

Query: 63  QRLPIKDTASWNTMISGFV----QKKNMAKARDLFLAMP----EKNSVSWSAMISGYIEC 114
            ++      +    IS  +      +N+   R L   +     E N    ++++S Y + 
Sbjct: 250 SQMRYTHAKTDYITISALLPVCGSAQNLRWGRGLHGMVVKSGLESNVCVCNSLLSMYSQA 309

Query: 115 GQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASS 174
           G+ + A  +F     + +++W +M++      +V+N      L+LL  M+      N  +
Sbjct: 310 GKSEDAEFVFHKMRERDLISWNSMMA-----SHVDNGNYPRALELLIEMLQTRKATNYVT 364

Query: 175 LSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ 234
            ++ L  C +L +L++   VH  V    L  +      L++MY K G +  A ++   + 
Sbjct: 365 FTTALSACYNLETLKI---VHAFVILLGLHHNLIIGNALVTMYGKFGSMAAAQRVCKIMP 421

Query: 235 RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA 282
            +D VTWNA+I G+A + +   A+  F+ +++EG+  + IT V LL A
Sbjct: 422 DRDEVTWNALIGGHADNKEPNAAIEAFNLLREEGVPVNYITIVNLLSA 469



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 69/133 (51%), Gaps = 1/133 (0%)

Query: 216 MYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSIT 275
           MY K G +E A  +F ++  ++  +WN ++SG+ + G  +KA++ F  M + G++P S  
Sbjct: 1   MYSKFGSIEHAQHVFDKMPERNEASWNNLMSGFVRVGWYQKAMQFFCHMLEHGVRPSSYV 60

Query: 276 FVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335
             +L+ AC+ +G +  G     + V   G+A      T ++   G  G + E VD++ K 
Sbjct: 61  AASLVTACDRSGCMTEGAFQVHAHVIKCGLACDVFVGTSLLHFYGTFGWVAE-VDMVFKE 119

Query: 336 PFKPQPAIFGTLL 348
             +P    + +L+
Sbjct: 120 IEEPNIVSWTSLM 132


>gi|147819178|emb|CAN71462.1| hypothetical protein VITISV_018656 [Vitis vinifera]
          Length = 787

 Score =  368 bits (944), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 200/537 (37%), Positives = 305/537 (56%), Gaps = 46/537 (8%)

Query: 19  QRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFF----QRLPIKDTASWN 74
           + G + DA+  F++IP+ DV+ ++ M++     SD    A + F    Q L + +  ++ 
Sbjct: 287 KSGDIDDARXAFEEIPKKDVIPWSFMIA-RYAQSDQSKEAVEMFFQMRQALVLPNQFTFA 345

Query: 75  TMISGFVQKK-----NMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPV 129
           +++      +     N      + + +     VS +A++  Y +CG+++ ++ LF  +P 
Sbjct: 346 SVLQACATMEGLNLGNQIHCHVIKIGLHSDVFVS-NALMDVYAKCGRMENSMXLFAESPH 404

Query: 130 KS-VVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSL 188
           ++ V  W  +I G+++ G       E  L+L   M+   ++    + SS L  C+ L++L
Sbjct: 405 RNDVTPWNTVIVGHVQLGD-----GEKALRLFLNMLEYRVQATEVTYSSALRACASLAAL 459

Query: 189 QLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGY 248
           + G Q+H L  K+   KD      LI MY KCG ++DA  +F  + ++D V+WNAMISGY
Sbjct: 460 EPGLQIHSLTVKTTFDKDIVVTNALIDMYAKCGSIKDARLVFDLMNKQDEVSWNAMISGY 519

Query: 249 AQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK 308
           + HG                            LAC +AGL+D G  YF SM+ D+GI   
Sbjct: 520 SMHG----------------------------LACANAGLLDQGQAYFTSMIQDHGIEPC 551

Query: 309 PDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLF 368
            +HYTCMV LLGR G L +AV LI ++PF+P   ++  LL AC +H  ++L   +A ++ 
Sbjct: 552 IEHYTCMVWLLGRGGHLDKAVKLIDEIPFQPSVMVWRALLGACVIHNDIELGRISAQHVL 611

Query: 369 NLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSG 428
            + P + A  +V L+N+YA  K+WD+VA +R +MK   V K PG SWIE    VH F  G
Sbjct: 612 EMEPQDKA-THVLLSNMYATAKRWDNVASVRKNMKRKGVKKEPGLSWIESQGTVHSFTVG 670

Query: 429 DRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLI 488
           D  HPE+  I+  L+ L  + K AGY+P+    L  V +E KE+LL  HSE+LA++FG+I
Sbjct: 671 DTSHPEVRVINGMLEWLHMKTKKAGYIPNYNVVLLDVEDEEKERLLWVHSERLALSFGII 730

Query: 489 KVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           + P G+PIR+ KNLR+C DCH A K IS + +REI+VRD  RFHHF++G CSCGDYW
Sbjct: 731 RTPSGSPIRIMKNLRICVDCHAAIKCISKVVQREIVVRDINRFHHFQEGLCSCGDYW 787



 Score =  134 bits (338), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 94/348 (27%), Positives = 168/348 (48%), Gaps = 16/348 (4%)

Query: 9   WNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRL--- 65
           WN +L  + K    L DA +LFD++P+ + +S+  ++      S   + A + F RL   
Sbjct: 76  WNILLNMYVKS-DFLCDASKLFDEMPERNTISFVTLIQG-YAESVRFLEAIELFVRLHRE 133

Query: 66  -----PIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
                P   T     ++S    +        +F    E N+   +A+I  Y  CG++D A
Sbjct: 134 GHELNPFVFTTILKLLVSMDCGELGWGIHACIFKLGHESNAFVGTALIDAYSVCGRVDVA 193

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLL 180
            E+F     K +V+WT M++ +      EN   ++ LKL   M  +G +PN  + +SV  
Sbjct: 194 REVFDGILYKDMVSWTGMVTCF-----AENDCFKEALKLFSQMRMVGFKPNNFTFASVFK 248

Query: 181 GCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVT 240
            C  L +  +GK VH    KS    D      L+ +Y K GD++DA   F EI +KDV+ 
Sbjct: 249 ACLGLEAFDVGKSVHGCALKSRYELDLYVGVALLDLYTKSGDIDDARXAFEEIPKKDVIP 308

Query: 241 WNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV 300
           W+ MI+ YAQ  + ++A+ +F +M+   + P+  TF ++L AC     ++LG Q    ++
Sbjct: 309 WSFMIARYAQSDQSKEAVEMFFQMRQALVLPNQFTFASVLQACATMEGLNLGNQIHCHVI 368

Query: 301 NDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLL 348
              G+ +       ++D+  + G++  ++ L  + P +     + T++
Sbjct: 369 K-IGLHSDVFVSNALMDVYAKCGRMENSMXLFAESPHRNDVTPWNTVI 415



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 52/214 (24%), Positives = 90/214 (42%), Gaps = 33/214 (15%)

Query: 171 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 230
           N+ + ++ L  C        GK +H  + K   C D  A   L++MY K   L DA KLF
Sbjct: 37  NSHAYANALQDCIQKDEPSRGKGLHCEILKRGGCLDLFAWNILLNMYVKSDFLCDASKLF 96

Query: 231 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL-----LACN- 284
            E+  ++ +++  +I GYA+  +  +A+ LF ++  EG + +   F  +L     + C  
Sbjct: 97  DEMPERNTISFVTLIQGYAESVRFLEAIELFVRLHREGHELNPFVFTTILKLLVSMDCGE 156

Query: 285 -----HAGLVDLGIQ----YFDSMVNDYGIAAKPD---------------HYTCMVDLLG 320
                HA +  LG +       ++++ Y +  + D                +T MV    
Sbjct: 157 LGWGIHACIFKLGHESNAFVGTALIDAYSVCGRVDVAREVFDGILYKDMVSWTGMVTCFA 216

Query: 321 RAGKLVEAVDLIKKM---PFKPQPAIFGTLLSAC 351
                 EA+ L  +M    FKP    F ++  AC
Sbjct: 217 ENDCFKEALKLFSQMRMVGFKPNNFTFASVFKAC 250


>gi|147826737|emb|CAN70653.1| hypothetical protein VITISV_010023 [Vitis vinifera]
          Length = 1301

 Score =  368 bits (944), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 199/507 (39%), Positives = 293/507 (57%), Gaps = 62/507 (12%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLS-CILLNSDDVVAAF 59
           M  + TV+WNS++ G+ K  G   +++ LF  +P  +VVS+N M++ CI    + +  A+
Sbjct: 73  MPHRDTVSWNSIITGYWKN-GCFDESKRLFGLMPTKNVVSWNSMIAGCI--EDERIDEAW 129

Query: 60  DFFQRLPIKDTASWNTMISGFVQ---------------KKN----------------MAK 88
            +FQ +P ++TASWN MISG V+               ++N                + +
Sbjct: 130 QYFQAMPQRNTASWNAMISGLVRYDRVEEASRLFEEMPRRNVISYTAMVDGYAKIGEIEQ 189

Query: 89  ARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMK---- 144
           AR LF  MP+KN VSW+ MISGY+E G+ D+A  LF+  P K++VA TAMI+GY K    
Sbjct: 190 ARALFNCMPQKNVVSWTVMISGYVENGKFDEAENLFEQMPDKNIVAMTAMITGYCKEGKT 249

Query: 145 ----------------------FGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGC 182
                                  GY +N   E+ LKL   M+ +G++P+ S+L SVL  C
Sbjct: 250 DKAKILFDQIPCRDLASWNAMITGYAQNGSGEEALKLHSQMLKMGMQPDHSTLISVLTAC 309

Query: 183 SHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWN 242
           S L+SLQ G++ H LV KS      +    LI+MYCKCG + D+   F +I   DVV+WN
Sbjct: 310 SSLASLQEGRKTHVLVLKSGYESRISICNALITMYCKCGSILDSELAFRQIDHPDVVSWN 369

Query: 243 AMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVND 302
           AMI+ +A+HG  ++AL  F +M+   ++PD ITF++LL AC HAG V   + +F+SM+  
Sbjct: 370 AMIAAFARHGFYDRALASFGEMRSNRVEPDGITFLSLLSACGHAGKVHESLNWFNSMIXS 429

Query: 303 YGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEF 362
           Y I  +P+H+ C+VD+L R G++ +A  +I++MPF+    I+G LL+AC VH  + L E 
Sbjct: 430 YKIVXRPEHFACLVDILSRGGQVEKAYKIIQEMPFEADCGIWGALLAACHVHLNVKLGEL 489

Query: 363 AAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVV 422
           AA  +  L P N +G YV L+NIYAA   W +V R+R  M+E  V K P YSW+E+   V
Sbjct: 490 AAKKIVELEPQN-SGAYVVLSNIYAAAGMWGEVTRVRGLMREQGVKKQPAYSWMEIDNKV 548

Query: 423 HEFRSGDRVHPELVSIHEKLKELEKRM 449
           H F   D  HPE+  I  +LK ++ +M
Sbjct: 549 HFFLGDDASHPEIHRIRLELKGMKLQM 575



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 93/278 (33%), Positives = 163/278 (58%), Gaps = 22/278 (7%)

Query: 11  SVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRL----P 66
           +V  G   + G +  A+++FD++P  D VS+N +++    N       FD  +RL    P
Sbjct: 51  NVQIGNLARAGNIGAARQVFDEMPHRDTVSWNSIITGYWKN-----GCFDESKRLFGLMP 105

Query: 67  IKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKV 126
            K+  SWN+MI+G ++ + + +A   F AMP++N+ SW+AMISG +   ++++A  LF+ 
Sbjct: 106 TKNVVSWNSMIAGCIEDERIDEAWQYFQAMPQRNTASWNAMISGLVRYDRVEEASRLFEE 165

Query: 127 APVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLS 186
            P ++V+++TAM+ GY K G +E + A     L   M      P  + +S  ++   ++ 
Sbjct: 166 MPRRNVISYTAMVDGYAKIGEIEQARA-----LFNCM------PQKNVVSWTVMISGYVE 214

Query: 187 SLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMIS 246
           + +  +  +  +F+    K+  A+T +I+ YCK G  + A  LF +I  +D+ +WNAMI+
Sbjct: 215 NGKFDEAEN--LFEQMPDKNIVAMTAMITGYCKEGKTDKAKILFDQIPCRDLASWNAMIT 272

Query: 247 GYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 284
           GYAQ+G GE+AL+L  +M   GM+PD  T +++L AC+
Sbjct: 273 GYAQNGSGEEALKLHSQMLKMGMQPDHSTLISVLTACS 310



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 52/224 (23%), Positives = 98/224 (43%), Gaps = 20/224 (8%)

Query: 190 LGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYA 249
             +Q H L  K    +D  A    I    + G++  A ++F E+  +D V+WN++I+GY 
Sbjct: 30  FNRQFHPLSIKLFSTQDVYAFNVQIGNLARAGNIGAARQVFDEMPHRDTVSWNSIITGYW 89

Query: 250 QHGKGEKALRLFDKMKDEGMKP--DSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAA 307
           ++G  +++ RLF      G+ P  + +++ +++  C     +D   QYF +M      + 
Sbjct: 90  KNGCFDESKRLF------GLMPTKNVVSWNSMIAGCIEDERIDEAWQYFQAMPQRNTAS- 142

Query: 308 KPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFA-AMN 366
               +  M+  L R  ++ EA  L ++MP +        +     V     + E   A  
Sbjct: 143 ----WNAMISGLVRYDRVEEASRLFEEMPRR------NVISYTAMVDGYAKIGEIEQARA 192

Query: 367 LFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKM 410
           LFN  P      +  + + Y    K+D+   +   M + N+V M
Sbjct: 193 LFNCMPQKNVVSWTVMISGYVENGKFDEAENLFEQMPDKNIVAM 236


>gi|224129498|ref|XP_002320601.1| predicted protein [Populus trichocarpa]
 gi|222861374|gb|EEE98916.1| predicted protein [Populus trichocarpa]
          Length = 629

 Score =  368 bits (944), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 197/481 (40%), Positives = 282/481 (58%), Gaps = 8/481 (1%)

Query: 67  IKDTASWNTMISGFVQKKNMAKARDLFLAMP-EKNSVSWSAMISGYIECGQLDKAVELFK 125
           + D    + ++  +V    M  A  LF     E N V W+ MI GY+  G L  + ELF 
Sbjct: 155 VSDEFVRSNLVRVYVMCGAMKDAHVLFYQTRLEGNVVLWNVMIDGYVRMGDLRASRELFD 214

Query: 126 VAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHL 185
             P KSVV+W  MISG  + G+ +     + +++   M    + PN  +L SVL   S L
Sbjct: 215 SMPNKSVVSWNVMISGCAQNGHFK-----EAIEMFHDMQLGDVPPNYVTLVSVLPAVSRL 269

Query: 186 SSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ-RKDVVTWNAM 244
            +++LGK VH    K+ +  D    + LI MY KCG ++ A ++F  I+ +K+ +TW+A+
Sbjct: 270 GAIELGKWVHLFAEKNEIEIDDVLGSALIDMYSKCGSIDKAVQVFEGIRNKKNPITWSAI 329

Query: 245 ISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYG 304
           I G A HG+   AL  F +M+  G+ P  + ++ +L AC+HAGLV+ G   +  MVN  G
Sbjct: 330 IGGLAMHGRARDALDHFWRMQQAGVTPSDVVYIGVLSACSHAGLVEEGRSIYYHMVNIVG 389

Query: 305 IAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAA 364
           +  + +HY CMVDLLGRAG L EA  LI  MP KP   I   LL AC++H  +++ E  A
Sbjct: 390 LLPRIEHYGCMVDLLGRAGCLEEAEQLILNMPVKPDDVILKALLGACKMHGNIEMGERIA 449

Query: 365 MNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHE 424
             L    P ++ G YV L+N++A+   W+ V ++RL MKE ++ K PG SWIE+  V+HE
Sbjct: 450 KILMGWYPHDS-GSYVALSNMFASEGNWEGVVKVRLKMKELDIRKDPGCSWIELDGVIHE 508

Query: 425 FRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIA 484
           F   D  HP    IH  L+E+  R++  GY P+    L  + E+ K+  L +HSEK+AIA
Sbjct: 509 FLVEDDSHPRAEGIHSMLEEMSDRLRSVGYRPNTTQVLLNMDEKEKQSALHYHSEKIAIA 568

Query: 485 FGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDY 544
           FGLI     TP+++ KNLRVC DCH + K +S I  R+IIVRD  RFHHF++G+CSC DY
Sbjct: 569 FGLISTRPQTPLQIVKNLRVCEDCHSSIKLVSKIYNRKIIVRDRKRFHHFENGSCSCMDY 628

Query: 545 W 545
           W
Sbjct: 629 W 629



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 72/326 (22%), Positives = 136/326 (41%), Gaps = 63/326 (19%)

Query: 83  KKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGY 142
           ++ +  AR  F  +   N  SW+ +I             +LF V  +++++ ++ M++  
Sbjct: 62  QREIKYARKFFSQIHHPNCFSWNTIIRAL----ADSDDDDLFHVNSLEALLYFSHMLT-- 115

Query: 143 MKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSP 202
                       DGL          + PN  +   VL  C+ L+ ++ GKQ+H  V K  
Sbjct: 116 ------------DGL----------VEPNKFTFPCVLKACAKLARIEEGKQLHGFVVKLG 153

Query: 203 LCKDTTALTPLISMYCKCGDLEDACKLFLEIQ---------------------------- 234
           L  D    + L+ +Y  CG ++DA  LF + +                            
Sbjct: 154 LVSDEFVRSNLVRVYVMCGAMKDAHVLFYQTRLEGNVVLWNVMIDGYVRMGDLRASRELF 213

Query: 235 ----RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVD 290
                K VV+WN MISG AQ+G  ++A+ +F  M+   + P+ +T V++L A +  G ++
Sbjct: 214 DSMPNKSVVSWNVMISGCAQNGHFKEAIEMFHDMQLGDVPPNYVTLVSVLPAVSRLGAIE 273

Query: 291 LGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSA 350
           LG ++         I       + ++D+  + G + +AV + + +  K  P  +  ++  
Sbjct: 274 LG-KWVHLFAEKNEIEIDDVLGSALIDMYSKCGSIDKAVQVFEGIRNKKNPITWSAIIGG 332

Query: 351 CRVHKRLD--LAEFAAMNLFNLNPAN 374
             +H R    L  F  M    + P++
Sbjct: 333 LAMHGRARDALDHFWRMQQAGVTPSD 358



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 81/303 (26%), Positives = 130/303 (42%), Gaps = 52/303 (17%)

Query: 21  GKLKDAQELFDKIP-QPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISG 79
           G +KDA  LF +   + +VV +N+M+    +   D+ A+ + F  +P K   SWN MISG
Sbjct: 172 GAMKDAHVLFYQTRLEGNVVLWNVMIDG-YVRMGDLRASRELFDSMPNKSVVSWNVMISG 230

Query: 80  FVQKKNMAKARDLFLAM----------------------------------PEKNSVS-- 103
             Q  +  +A ++F  M                                   EKN +   
Sbjct: 231 CAQNGHFKEAIEMFHDMQLGDVPPNYVTLVSVLPAVSRLGAIELGKWVHLFAEKNEIEID 290

Query: 104 ---WSAMISGYIECGQLDKAVELFK-VAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKL 159
               SA+I  Y +CG +DKAV++F+ +   K+ + W+A+I G    G      A D L  
Sbjct: 291 DVLGSALIDMYSKCGSIDKAVQVFEGIRNKKNPITWSAIIGGLAMHGR-----ARDALDH 345

Query: 160 LRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQV-HQLVFKSPLCKDTTALTPLISMYC 218
              M   G+ P+      VL  CSH   ++ G+ + + +V    L         ++ +  
Sbjct: 346 FWRMQQAGVTPSDVVYIGVLSACSHAGLVEEGRSIYYHMVNIVGLLPRIEHYGCMVDLLG 405

Query: 219 KCGDLEDACKLFLEIQRK-DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKP-DSITF 276
           + G LE+A +L L +  K D V   A++     HG  E   R+   +   G  P DS ++
Sbjct: 406 RAGCLEEAEQLILNMPVKPDDVILKALLGACKMHGNIEMGERIAKILM--GWYPHDSGSY 463

Query: 277 VAL 279
           VAL
Sbjct: 464 VAL 466


>gi|326515658|dbj|BAK07075.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 796

 Score =  368 bits (944), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 200/549 (36%), Positives = 306/549 (55%), Gaps = 22/549 (4%)

Query: 11  SVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCIL-----LNSDDVVAAFDFFQRL 65
           S + G   ++G L +A  LF  +  P+VV +N M++ +      + +D +  A   +  +
Sbjct: 256 SAMVGMYAKKGALSEAVALFKSVLDPNVVVFNAMIAGLCRDEAAVGTDVLREALSLYSEV 315

Query: 66  PIKDTASWNTMISGFVQKKNMAKARDLFLAMP--------EKNSVSWSAMISGYIECGQL 117
             +         S  ++  N+A   +    +         + +    SA+I  Y+  G +
Sbjct: 316 QSRGMEPTEFTFSSVIRACNLAGDIEFGKQIHGQVLKHCFQGDDFIGSALIDLYLNSGCM 375

Query: 118 DKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSS 177
           +     F   P + VV WTAMISG      V+N   E  L L   ++G G++P+  ++SS
Sbjct: 376 EDGFRCFTSVPKQDVVTWTAMISGC-----VQNELFERALTLFHELLGAGLKPDPFTISS 430

Query: 178 VLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKD 237
           V+  C+ L+  + G+Q+     KS   + T      I MY + GD+  A + F E++  D
Sbjct: 431 VMNACASLAVARTGEQIQCFATKSGFGRFTAMGNSCIHMYARSGDVHAAVRRFQEMESHD 490

Query: 238 VVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFD 297
           +V+W+A+IS +AQHG    ALR F++M D  + P+ ITF+ +L AC+H GLVD G++Y++
Sbjct: 491 IVSWSAVISSHAQHGCARDALRFFNEMVDAKVVPNEITFLGVLTACSHGGLVDEGLKYYE 550

Query: 298 SMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRL 357
           +M  +Y ++    H TC+VDLLGRAG+L +A   I+   F  +P I+ +LL++CR+H+ +
Sbjct: 551 TMKEEYALSPTIKHCTCVVDLLGRAGRLADAEAFIRDSIFHDEPVIWRSLLASCRIHRDM 610

Query: 358 DLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIE 417
           +  +  A  +  L P+++A  YV L NIY    +    ++IR  MKE  V K PG SWIE
Sbjct: 611 ERGQLVADRIMELQPSSSAS-YVNLYNIYLDAGELSLASKIRDVMKERGVKKEPGLSWIE 669

Query: 418 VGTVVHEFRSGDRVHPELVSIHEKLKE-LEKRMKLAGYVPDLEFALHAVGEEVKEQLLLF 476
           + + VH F +GD+ HPE  +I+ KL E L K  KL         +   +  E  +  + +
Sbjct: 670 LRSGVHSFVAGDKSHPESNAIYSKLAEMLSKIDKLTATDASSTKSDDTIRNE--QSWMNW 727

Query: 477 HSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKD 536
           HSEKLA+A GLI +P   PIRV KNLRVC DCH   K IS  EKREI++RD  RFHHF+D
Sbjct: 728 HSEKLAVALGLIHLPQSAPIRVMKNLRVCRDCHLTMKLISKSEKREIVLRDAIRFHHFRD 787

Query: 537 GTCSCGDYW 545
           G+CSC DYW
Sbjct: 788 GSCSCADYW 796



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 98/354 (27%), Positives = 161/354 (45%), Gaps = 48/354 (13%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNS--DDVVAAFDFFQRL-- 65
           NS+++ +A+  G +  A+++FD   + D VS+N ++S  +     DD++  F   +R   
Sbjct: 153 NSLVSMYARC-GDMGQARQVFDAADERDDVSWNALVSGYVRAGAQDDMLRVFAMMRRSGI 211

Query: 66  -------------------PIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSA 106
                              P+ D A+    + G V K       D+FLA         SA
Sbjct: 212 GLNSFALGSVIKCCAGSDDPVMDIAA---AVHGCVVKAGFDS--DVFLA---------SA 257

Query: 107 MISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMK-FGYVENSWAEDGLKLLRMMIG 165
           M+  Y + G L +AV LFK     +VV + AMI+G  +    V      + L L   +  
Sbjct: 258 MVGMYAKKGALSEAVALFKSVLDPNVVVFNAMIAGLCRDEAAVGTDVLREALSLYSEVQS 317

Query: 166 LGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLED 225
            G+ P   + SSV+  C+    ++ GKQ+H  V K     D    + LI +Y   G +ED
Sbjct: 318 RGMEPTEFTFSSVIRACNLAGDIEFGKQIHGQVLKHCFQGDDFIGSALIDLYLNSGCMED 377

Query: 226 ACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNH 285
             + F  + ++DVVTW AMISG  Q+   E+AL LF ++   G+KPD  T  +++ AC  
Sbjct: 378 GFRCFTSVPKQDVVTWTAMISGCVQNELFERALTLFHELLGAGLKPDPFTISSVMNACAS 437

Query: 286 AGLVDLGIQYFDSMVNDYGIAAKPDHYTCM----VDLLGRAGKLVEAVDLIKKM 335
             +   G Q     +  +   +    +T M    + +  R+G +  AV   ++M
Sbjct: 438 LAVARTGEQ-----IQCFATKSGFGRFTAMGNSCIHMYARSGDVHAAVRRFQEM 486



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 69/282 (24%), Positives = 120/282 (42%), Gaps = 42/282 (14%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVV 133
           NT+++ + +      AR L   MP  N+VS++ +I  Y   GQ + ++E F         
Sbjct: 53  NTLLAAYCRLGG--HARRLLDEMPRTNAVSFNLLIDAYSRAGQPEASLETFA-------- 102

Query: 134 AWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ 193
                                      R     G+R +  + ++ L  CS    L+ GK 
Sbjct: 103 ---------------------------RARRSAGVRADRFTYAAALAACSRAGRLREGKA 135

Query: 194 VHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGK 253
           VH L     +         L+SMY +CGD+  A ++F     +D V+WNA++SGY + G 
Sbjct: 136 VHALSVLEGIAGGVFVSNSLVSMYARCGDMGQARQVFDAADERDDVSWNALVSGYVRAGA 195

Query: 254 GEKALRLFDKMKDEGMKPDSITFVALLLACNHAG--LVDLGIQYFDSMVNDYGIAAKPDH 311
            +  LR+F  M+  G+  +S    +++  C  +   ++D+       +V   G  +    
Sbjct: 196 QDDMLRVFAMMRRSGIGLNSFALGSVIKCCAGSDDPVMDIAAAVHGCVVK-AGFDSDVFL 254

Query: 312 YTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSA-CR 352
            + MV +  + G L EAV L K +   P   +F  +++  CR
Sbjct: 255 ASAMVGMYAKKGALSEAVALFKSV-LDPNVVVFNAMIAGLCR 295


>gi|15234006|ref|NP_193610.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206861|sp|Q9SN39.1|PP320_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g18750, chloroplastic; Flags: Precursor
 gi|4539394|emb|CAB37460.1| putative protein [Arabidopsis thaliana]
 gi|7268669|emb|CAB78877.1| putative protein [Arabidopsis thaliana]
 gi|332658686|gb|AEE84086.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 871

 Score =  368 bits (944), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 198/550 (36%), Positives = 316/550 (57%), Gaps = 40/550 (7%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQ----PDVVSYNIMLSCILLNSDDVV 56
           M+ ++ V++ S++AG+A++ G   +A +LF+++ +    PDV +   +L+C         
Sbjct: 357 MSDRSVVSYTSMIAGYARE-GLAGEAVKLFEEMEEEGISPDVYTVTAVLNCC-------- 407

Query: 57  AAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQ 116
                  R  + D       +  ++++ ++    D+F++         +A++  Y +CG 
Sbjct: 408 ------ARYRLLDEGK---RVHEWIKENDLG--FDIFVS---------NALMDMYAKCGS 447

Query: 117 LDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLG-IRPNASSL 175
           + +A  +F    VK +++W  +I GY K     N +A + L L  +++      P+  ++
Sbjct: 448 MQEAELVFSEMRVKDIISWNTIIGGYSK-----NCYANEALSLFNLLLEEKRFSPDERTV 502

Query: 176 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR 235
           + VL  C+ LS+   G+++H  + ++    D      L+ MY KCG L  A  LF +I  
Sbjct: 503 ACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIAS 562

Query: 236 KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQY 295
           KD+V+W  MI+GY  HG G++A+ LF++M+  G++ D I+FV+LL AC+H+GLVD G ++
Sbjct: 563 KDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRF 622

Query: 296 FDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHK 355
           F+ M ++  I    +HY C+VD+L R G L++A   I+ MP  P   I+G LL  CR+H 
Sbjct: 623 FNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHH 682

Query: 356 RLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSW 415
            + LAE  A  +F L P N  G YV +ANIYA  +KW+ V R+R  + +  + K PG SW
Sbjct: 683 DVKLAEKVAEKVFELEPEN-TGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSW 741

Query: 416 IEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLL 475
           IE+   V+ F +GD  +PE  +I   L+++  RM   GY P  ++AL    E  KE+ L 
Sbjct: 742 IEIKGRVNIFVAGDSSNPETENIEAFLRKVRARMIEEGYSPLTKYALIDAEEMEKEEALC 801

Query: 476 FHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFK 535
            HSEKLA+A G+I    G  IRV KNLRVCGDCH   K++S + +REI++RD+ RFH FK
Sbjct: 802 GHSEKLAMALGIISSGHGKIIRVTKNLRVCGDCHEMAKFMSKLTRREIVLRDSNRFHQFK 861

Query: 536 DGTCSCGDYW 545
           DG CSC  +W
Sbjct: 862 DGHCSCRGFW 871



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 101/376 (26%), Positives = 190/376 (50%), Gaps = 30/376 (7%)

Query: 8   NWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPI 67
           N  S L+      G LK+A  +FD++     + +NI+++  L  S D   +   F+++  
Sbjct: 130 NLGSKLSLMYTNCGDLKEASRVFDEVKIEKALFWNILMN-ELAKSGDFSGSIGLFKKMMS 188

Query: 68  K----DTASWNTMISGFVQKKNMAKARDL--FL---AMPEKNSVSWSAMISGYIECGQLD 118
                D+ +++ +   F   +++     L  F+      E+NSV  +++++ Y++  ++D
Sbjct: 189 SGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVG-NSLVAFYLKNQRVD 247

Query: 119 KAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSV 178
            A ++F     + V++W ++I+GY     V N  AE GL +   M+  GI  + +++ SV
Sbjct: 248 SARKVFDEMTERDVISWNSIINGY-----VSNGLAEKGLSVFVQMLVSGIEIDLATIVSV 302

Query: 179 LLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDV 238
             GC+    + LG+ VH +  K+   ++      L+ MY KCGDL+ A  +F E+  + V
Sbjct: 303 FAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSV 362

Query: 239 VTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDS 298
           V++ +MI+GYA+ G   +A++LF++M++EG+ PD  T  A+L  C    L+D G +  + 
Sbjct: 363 VSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEW 422

Query: 299 M-VNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK---PQPAIFGTLLSACRVH 354
           +  ND G      +   ++D+  + G + EA  +  +M  K       I G     C  +
Sbjct: 423 IKENDLGFDIFVSN--ALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYAN 480

Query: 355 KRLDLAEFAAMNLFNL 370
           +        A++LFNL
Sbjct: 481 E--------ALSLFNL 488



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 70/130 (53%), Gaps = 2/130 (1%)

Query: 147 YVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKD 206
           + E+   E+ +KLL +     I P   +L SVL  C+   SL+ GK+V   +  +    D
Sbjct: 71  FCESGNLENAVKLLCVSGKWDIDPR--TLCSVLQLCADSKSLKDGKEVDNFIRGNGFVID 128

Query: 207 TTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKD 266
           +   + L  MY  CGDL++A ++F E++ +  + WN +++  A+ G    ++ LF KM  
Sbjct: 129 SNLGSKLSLMYTNCGDLKEASRVFDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMS 188

Query: 267 EGMKPDSITF 276
            G++ DS TF
Sbjct: 189 SGVEMDSYTF 198


>gi|115456255|ref|NP_001051728.1| Os03g0821700 [Oryza sativa Japonica Group]
 gi|29124127|gb|AAO65868.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|108711802|gb|ABF99597.1| expressed protein [Oryza sativa Japonica Group]
 gi|113550199|dbj|BAF13642.1| Os03g0821700 [Oryza sativa Japonica Group]
 gi|125588431|gb|EAZ29095.1| hypothetical protein OsJ_13153 [Oryza sativa Japonica Group]
 gi|215736898|dbj|BAG95827.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 602

 Score =  368 bits (944), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 176/431 (40%), Positives = 269/431 (62%), Gaps = 6/431 (1%)

Query: 115 GQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASS 174
           G L  A  +F   P +S V W+AMI GY++ G      + D + L R M   G++ +  +
Sbjct: 178 GFLGDARNVFDRMPKESAVTWSAMIGGYVRGGL-----SSDAVDLFREMQANGVQADEVT 232

Query: 175 LSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ 234
           +  VL   + L +L+L + V + V +  + K  T    LI    KCGD++ A  +F  +Q
Sbjct: 233 VIGVLAAATDLGALELARWVRRFVEREGIGKSVTLCNALIDTLAKCGDVDGAVAVFEGMQ 292

Query: 235 RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ 294
           ++ VV+W ++I   A  G+G++A+R+F++MK  G+ PD + F+ +L AC+HAG+VD G  
Sbjct: 293 QRSVVSWTSVIDALAMEGRGKEAVRVFEEMKVAGVPPDDVAFIGVLTACSHAGMVDEGCG 352

Query: 295 YFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVH 354
           YFD+M  +YGI  K +HY CMVD+ GRAG +  A++ ++ MP +P P I+ +L+SACR H
Sbjct: 353 YFDAMKVEYGIEPKIEHYGCMVDMFGRAGMVERAMEFVRTMPIQPNPVIWRSLVSACRAH 412

Query: 355 KRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYS 414
            RL+L E    +L +  PA+ A  Y+ L+N++A  ++W + + IR  M +  + K+PG S
Sbjct: 413 GRLELGESITRSLLHEYPAHEAN-YIMLSNVFALTQRWKEKSEIRREMSKRGIKKVPGCS 471

Query: 415 WIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLL 474
            +E+   VHEF +GD  HP+   I+  ++E+ + ++  G++      L  + EE KE  L
Sbjct: 472 IVELDGEVHEFIAGDESHPQYKDIYRMVEEMARELRRVGHIAATSEVLLDLDEEDKEGAL 531

Query: 475 LFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHF 534
            +HSEKLAIAF L++ P GT +RV KNLRVC DCH A K IS + +REI+VRD +RFH F
Sbjct: 532 QWHSEKLAIAFALLRTPPGTQVRVVKNLRVCSDCHAAIKCISQVYRREIVVRDRSRFHRF 591

Query: 535 KDGTCSCGDYW 545
           KDG+CSC D+W
Sbjct: 592 KDGSCSCKDFW 602



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 65/294 (22%), Positives = 124/294 (42%), Gaps = 53/294 (18%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCIL---LNSDDVVAAFDFFQRLPIKDTASWNTMI 77
           G L DA+ +FD++P+   V+++ M+   +   L+SD    A D F+ +      +    +
Sbjct: 178 GFLGDARNVFDRMPKESAVTWSAMIGGYVRGGLSSD----AVDLFREMQANGVQADEVTV 233

Query: 78  SGFVQKKNMAKARDL---FLAMPEKNSVSWS-----AMISGYIECGQLDKAVELFKVAPV 129
            G +       A +L        E+  +  S     A+I    +CG +D AV +F+    
Sbjct: 234 IGVLAAATDLGALELARWVRRFVEREGIGKSVTLCNALIDTLAKCGDVDGAVAVFEGMQQ 293

Query: 130 KSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQ 189
           +SVV+WT++I      G       ++ +++   M   G+ P+  +   VL  CSH   + 
Sbjct: 294 RSVVSWTSVIDALAMEGR-----GKEAVRVFEEMKVAGVPPDDVAFIGVLTACSHAGMVD 348

Query: 190 LGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYA 249
            G                            CG   DA K+   I+ K +  +  M+  + 
Sbjct: 349 EG----------------------------CGYF-DAMKVEYGIEPK-IEHYGCMVDMFG 378

Query: 250 QHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDY 303
           + G  E+A+     M    ++P+ + + +L+ AC   G ++LG     S++++Y
Sbjct: 379 RAGMVERAMEFVRTMP---IQPNPVIWRSLVSACRAHGRLELGESITRSLLHEY 429


>gi|297795617|ref|XP_002865693.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311528|gb|EFH41952.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 640

 Score =  368 bits (944), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 197/445 (44%), Positives = 275/445 (61%), Gaps = 7/445 (1%)

Query: 102 VSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLR 161
           V W+ MI GY+  G    A  LF     +SVV+W  MISGY + G+ +     D +++ R
Sbjct: 202 VLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSQNGFFK-----DAVEVFR 256

Query: 162 -MMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKC 220
            M  G  IRPN  +L SVL   S L SL+LG+ +H     S +  D    + LI MY KC
Sbjct: 257 EMKKGEDIRPNYVTLVSVLPAVSRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKC 316

Query: 221 GDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 280
           G +E A  +F  + R++V+TW+AMI+G+A HG+   A+  F KM+  G++P  + ++ LL
Sbjct: 317 GIIEKAIMVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLL 376

Query: 281 LACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQ 340
            AC+HAGLV+ G +YF  MV+  G+  + +HY CMVDLLGR G L EA + I  MP KP 
Sbjct: 377 TACSHAGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRLGLLDEAEEFILNMPIKPD 436

Query: 341 PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRL 400
             I+  LL ACR+H+ +++ +  A  L ++ P ++ G YV L+N+YA+   W +V+ +RL
Sbjct: 437 DVIWKALLGACRMHRNVEMGKRVANILMDMVPHDS-GAYVALSNMYASQGNWSEVSEMRL 495

Query: 401 SMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEF 460
            MKE ++ K PG SWI++  V+HEF   D  HP    I+  L E+  +++LAGY P    
Sbjct: 496 RMKEMDIRKDPGCSWIDIDGVLHEFLVEDDSHPRAKEINSMLVEISDKLRLAGYRPITTQ 555

Query: 461 ALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEK 520
            L  + EE KE  L +HSEK+A AFGLI    G PIR+ KNLR+C DCH + K IS + K
Sbjct: 556 VLLNLEEEDKENALHYHSEKMATAFGLISTSPGKPIRIVKNLRICEDCHSSIKLISKVYK 615

Query: 521 REIIVRDTTRFHHFKDGTCSCGDYW 545
           R+I VRD  RFHHF+DG+CSC DYW
Sbjct: 616 RKITVRDRKRFHHFQDGSCSCMDYW 640



 Score = 98.2 bits (243), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 77/315 (24%), Positives = 140/315 (44%), Gaps = 56/315 (17%)

Query: 117 LDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLL-RMMIGLGIRPNASSL 175
           LD A ++F   P ++  +W  +I G   F   +   A   + L   MM    I PN  + 
Sbjct: 68  LDYAHKIFNQMPQRNCFSWNTIIRG---FSESDEDKALIAITLFCEMMSDEFIEPNRFTF 124

Query: 176 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFL---- 231
            SVL  C+    +Q GKQ+H L  K     D   ++ L+ MY  CG ++DAC LF     
Sbjct: 125 PSVLKACAKTGKIQQGKQIHGLALKYGFGGDEFVMSNLVRMYVICGLMKDACVLFYKNII 184

Query: 232 -----------------------------------------EIQRKDVVTWNAMISGYAQ 250
                                                    +++++ VV+WN MISGY+Q
Sbjct: 185 EREMVMMIDRRKRDGEVVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSQ 244

Query: 251 HGKGEKALRLFDKMKD-EGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKP 309
           +G  + A+ +F +MK  E ++P+ +T V++L A +  G ++LG ++      D GI    
Sbjct: 245 NGFFKDAVEVFREMKKGEDIRPNYVTLVSVLPAVSRLGSLELG-EWLHLYAEDSGIRIDD 303

Query: 310 DHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAE--FAAMNL 367
              + ++D+  + G + +A+ + +++P +     +  +++   +H +   A   F  M  
Sbjct: 304 VLGSALIDMYSKCGIIEKAIMVFERLP-RENVITWSAMINGFAIHGQAGDAIDCFCKMRQ 362

Query: 368 FNLNPANAAGCYVQL 382
             + P++ A  Y+ L
Sbjct: 363 AGVRPSDVA--YINL 375



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 72/286 (25%), Positives = 123/286 (43%), Gaps = 51/286 (17%)

Query: 37  DVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM 96
           +VV +N+M+    +   D  AA   F ++  +   SWNTMISG+ Q      A ++F  M
Sbjct: 200 EVVLWNVMIDG-YMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSQNGFFKDAVEVFREM 258

Query: 97  PEKNSV-----------------------SW-----------------SAMISGYIECGQ 116
            +   +                        W                 SA+I  Y +CG 
Sbjct: 259 KKGEDIRPNYVTLVSVLPAVSRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGI 318

Query: 117 LDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLS 176
           ++KA+ +F+  P ++V+ W+AMI+G+   G      A D +     M   G+RP+  +  
Sbjct: 319 IEKAIMVFERLPRENVITWSAMINGFAIHGQ-----AGDAIDCFCKMRQAGVRPSDVAYI 373

Query: 177 SVLLGCSHLSSLQLGKQ-VHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR 235
           ++L  CSH   ++ G++   Q+V    L         ++ +  + G L++A +  L +  
Sbjct: 374 NLLTACSHAGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRLGLLDEAEEFILNMPI 433

Query: 236 K-DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKP-DSITFVAL 279
           K D V W A++     H   E   R+ + + D  M P DS  +VAL
Sbjct: 434 KPDDVIWKALLGACRMHRNVEMGKRVANILMD--MVPHDSGAYVAL 477


>gi|225434804|ref|XP_002280428.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic [Vitis vinifera]
          Length = 658

 Score =  368 bits (944), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 190/443 (42%), Positives = 283/443 (63%), Gaps = 8/443 (1%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI 164
           + ++  Y   G +  A  +F   PVK+VV+W+AMI+ Y K     N    + L+L R M+
Sbjct: 222 TTLLDMYARFGCVLNASRVFDQMPVKNVVSWSAMIACYSK-----NGKPLEALELFRKMM 276

Query: 165 --GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGD 222
                + PN+ ++ SVL  C+ L++L+ GK +H  + +  L      ++ L+++Y +CG+
Sbjct: 277 LENQDLLPNSVTMVSVLQACAALAALEQGKLMHGYILRRGLDSILPVVSALVTVYARCGN 336

Query: 223 LEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA 282
           LE   ++F  ++++DVV+WN++IS Y  HG G KA+++F +M D+G+ P  I+FV++L A
Sbjct: 337 LELGHRVFERMEKRDVVSWNSLISSYGIHGFGRKAIQIFKEMIDQGLSPSPISFVSVLGA 396

Query: 283 CNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPA 342
           C+HAGLV+ G   F+SMV  + I    +HY CMVDLLGRA +L EA  +I  M  +P P 
Sbjct: 397 CSHAGLVEEGKVLFESMVRGHKIFPSVEHYACMVDLLGRANRLDEAAKIIDDMRIEPGPK 456

Query: 343 IFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSM 402
           ++G+LL +CR+H  ++LAE A   LF L P N AG YV LA+IYA  K W++V R+++ +
Sbjct: 457 VWGSLLGSCRIHCNVELAERATSRLFELEPTN-AGNYVLLADIYAEAKMWNEVKRVKMLL 515

Query: 403 KENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFAL 462
           +   + K+PG S IE+   ++ F S D  +P++  +H  L +L   MK  GYVPD +  L
Sbjct: 516 EARGLQKVPGRSCIEIRRKIYSFMSVDEFNPQIEQLHALLLKLSMEMKEKGYVPDTKVVL 575

Query: 463 HAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKRE 522
           + +  E KE+++L HSEKLA+AFGLI    G  IR+ KNLR+C DCH  TK+IS    RE
Sbjct: 576 YDLDPEEKERIVLGHSEKLALAFGLINSKKGETIRITKNLRLCEDCHSVTKFISKFANRE 635

Query: 523 IIVRDTTRFHHFKDGTCSCGDYW 545
           I+VRD  RFH F+DG CSCGDYW
Sbjct: 636 ILVRDVNRFHLFQDGVCSCGDYW 658



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 72/279 (25%), Positives = 132/279 (47%), Gaps = 42/279 (15%)

Query: 8   NWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIM-LSCILLNSDDVVAAFDFFQRLP 66
           N N ++    KQ G L  A ++  + P P   +Y ++ LSC   NS  +    D  + L 
Sbjct: 49  NNNPLIQSLCKQ-GNLNQALQVLSQEPNPTQHTYELLILSCTRQNS--LPQGIDLHRHL- 104

Query: 67  IKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKV 126
           I D +                  +D FLA         + +I+ Y E   +D A ++F  
Sbjct: 105 IHDGSD-----------------QDPFLA---------TKLINMYSELDSIDNARKVFDK 138

Query: 127 APVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGC---- 182
              +++  W A+       GY       + L L R M  +G+  +  + + VL  C    
Sbjct: 139 TRKRTIYVWNALFRALTLAGY-----GREVLDLYRRMNRIGVPSDRFTYTYVLKACVASE 193

Query: 183 SHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWN 242
           + +S L  G+++H  + +         +T L+ MY + G + +A ++F ++  K+VV+W+
Sbjct: 194 AFVSLLLNGREIHGHILRHGFEGHVHIMTTLLDMYARFGCVLNASRVFDQMPVKNVVSWS 253

Query: 243 AMISGYAQHGKGEKALRLFDKM--KDEGMKPDSITFVAL 279
           AMI+ Y+++GK  +AL LF KM  +++ + P+S+T V++
Sbjct: 254 AMIACYSKNGKPLEALELFRKMMLENQDLLPNSVTMVSV 292



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/172 (23%), Positives = 79/172 (45%), Gaps = 3/172 (1%)

Query: 170 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 229
           P   +   ++L C+  +SL  G  +H+ +      +D    T LI+MY +   +++A K+
Sbjct: 76  PTQHTYELLILSCTRQNSLPQGIDLHRHLIHDGSDQDPFLATKLINMYSELDSIDNARKV 135

Query: 230 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC-NHAGL 288
           F + +++ +  WNA+       G G + L L+ +M   G+  D  T+  +L AC      
Sbjct: 136 FDKTRKRTIYVWNALFRALTLAGYGREVLDLYRRMNRIGVPSDRFTYTYVLKACVASEAF 195

Query: 289 VDLGI--QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 338
           V L +  +     +  +G        T ++D+  R G ++ A  +  +MP K
Sbjct: 196 VSLLLNGREIHGHILRHGFEGHVHIMTTLLDMYARFGCVLNASRVFDQMPVK 247



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 54/256 (21%), Positives = 117/256 (45%), Gaps = 18/256 (7%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDT---ASWNTMI 77
           G + +A  +FD++P  +VVS++ M++C   N    + A + F+++ +++     +  TM+
Sbjct: 232 GCVLNASRVFDQMPVKNVVSWSAMIACYSKNGKP-LEALELFRKMMLENQDLLPNSVTMV 290

Query: 78  S-----GFVQKKNMAKARDLFLAMPEKNSV--SWSAMISGYIECGQLDKAVELFKVAPVK 130
           S       +      K    ++     +S+    SA+++ Y  CG L+    +F+    +
Sbjct: 291 SVLQACAALAALEQGKLMHGYILRRGLDSILPVVSALVTVYARCGNLELGHRVFERMEKR 350

Query: 131 SVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQL 190
            VV+W ++IS Y   G+         +++ + MI  G+ P+  S  SVL  CSH   ++ 
Sbjct: 351 DVVSWNSLISSYGIHGF-----GRKAIQIFKEMIDQGLSPSPISFVSVLGACSHAGLVEE 405

Query: 191 GKQVHQ-LVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ-RKDVVTWNAMISGY 248
           GK + + +V    +         ++ +  +   L++A K+  +++       W +++   
Sbjct: 406 GKVLFESMVRGHKIFPSVEHYACMVDLLGRANRLDEAAKIIDDMRIEPGPKVWGSLLGSC 465

Query: 249 AQHGKGEKALRLFDKM 264
             H   E A R   ++
Sbjct: 466 RIHCNVELAERATSRL 481


>gi|449441075|ref|XP_004138309.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 562

 Score =  368 bits (944), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 184/441 (41%), Positives = 265/441 (60%), Gaps = 6/441 (1%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI 164
           +A++  Y  C  +  A +LF   P ++ V W A+I+GY       N      +   R M+
Sbjct: 128 TALVHLYCTCLSISDASQLFDEMPERNAVTWNALITGY-----THNRKFVKAIDAFRGML 182

Query: 165 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 224
             G +P+  ++  VL  CSHL +   GK +H+ ++ + L  +    T LI MY KCG + 
Sbjct: 183 ADGAQPSERTVVVVLSACSHLGAFNQGKWIHEFIYHNRLRLNVFVGTALIDMYAKCGAVY 242

Query: 225 DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 284
           +  K+F EI+ K+V TWN +ISGYA +G+G+ AL+ F +M  E  KPD +TF+ +L AC 
Sbjct: 243 EVEKVFEEIREKNVYTWNVLISGYAMNGQGDAALQAFSRMLMENFKPDEVTFLGVLCACC 302

Query: 285 HAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIF 344
           H GLV  G   F SM   +G+  + +HY CMVDLLGRAG L EA++LI+ M  +P P I+
Sbjct: 303 HQGLVTEGRWQFMSMKQQFGLQPRIEHYGCMVDLLGRAGLLEEALELIQSMSIEPDPIIW 362

Query: 345 GTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKE 404
             LL ACRVH    L E+    L  L P N    YV L+NIY+  ++W +V ++R  M  
Sbjct: 363 RALLCACRVHGNTKLGEYIIKRLIELEPNNGEN-YVLLSNIYSRERRWAEVGKLRGMMNL 421

Query: 405 NNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHA 464
             + K+PG S IE+  VV+EF + +   PE  +I+++L  L K++K  GYV   + AL+ 
Sbjct: 422 RGIRKVPGCSSIEINNVVYEFVASNDRKPEFEAIYKQLDNLIKKLKENGYVTGTDMALYD 481

Query: 465 VGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREII 524
           + +E KE  +++HSEKLA+AFGL+  PL   +R+ KNLR+C DCH   K +S + KR I+
Sbjct: 482 IEKEEKEHSVMYHSEKLALAFGLLNSPLDCTLRIVKNLRICLDCHEFFKVLSLVYKRYIV 541

Query: 525 VRDTTRFHHFKDGTCSCGDYW 545
           VRD  RFHHF +G CSC DYW
Sbjct: 542 VRDRNRFHHFYEGFCSCRDYW 562



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 64/239 (26%), Positives = 113/239 (47%), Gaps = 9/239 (3%)

Query: 136 TAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVH 195
            +MI  Y+      NS     L +  +M    I P++S+  +VL   + L    +GK +H
Sbjct: 58  NSMIRTYLDLNKHLNS-----LYIFALMHKFSILPDSSTFPAVLKATAQLCDTGVGKMIH 112

Query: 196 QLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGE 255
            +V +     D    T L+ +YC C  + DA +LF E+  ++ VTWNA+I+GY  + K  
Sbjct: 113 GIVIQMGFICDVYTSTALVHLYCTCLSISDASQLFDEMPERNAVTWNALITGYTHNRKFV 172

Query: 256 KALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCM 315
           KA+  F  M  +G +P   T V +L AC+H G  + G ++    +    +       T +
Sbjct: 173 KAIDAFRGMLADGAQPSERTVVVVLSACSHLGAFNQG-KWIHEFIYHNRLRLNVFVGTAL 231

Query: 316 VDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLD--LAEFAAMNLFNLNP 372
           +D+  + G + E   + +++  K     +  L+S   ++ + D  L  F+ M + N  P
Sbjct: 232 IDMYAKCGAVYEVEKVFEEIREK-NVYTWNVLISGYAMNGQGDAALQAFSRMLMENFKP 289


>gi|62320406|dbj|BAD94843.1| putative protein [Arabidopsis thaliana]
          Length = 720

 Score =  368 bits (944), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 198/550 (36%), Positives = 316/550 (57%), Gaps = 40/550 (7%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQ----PDVVSYNIMLSCILLNSDDVV 56
           M+ ++ V++ S++AG+A++ G   +A +LF+++ +    PDV +   +L+C         
Sbjct: 206 MSDRSVVSYTSMIAGYARE-GLAGEAVKLFEEMEEEGISPDVYTVTAVLNCC-------- 256

Query: 57  AAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQ 116
                  R  + D       +  ++++ ++    D+F++         +A++  Y +CG 
Sbjct: 257 ------ARYRLLDEGK---RVHEWIKENDLG--FDIFVS---------NALMDMYAKCGS 296

Query: 117 LDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLG-IRPNASSL 175
           + +A  +F    VK +++W  +I GY K     N +A + L L  +++      P+  ++
Sbjct: 297 MQEAELVFSEMRVKDIISWNTIIGGYSK-----NCYANEALSLFNLLLEEKRFSPDERTV 351

Query: 176 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR 235
           + VL  C+ LS+   G+++H  + ++    D      L+ MY KCG L  A  LF +I  
Sbjct: 352 ACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIAS 411

Query: 236 KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQY 295
           KD+V+W  MI+GY  HG G++A+ LF++M+  G++ D I+FV+LL AC+H+GLVD G ++
Sbjct: 412 KDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRF 471

Query: 296 FDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHK 355
           F+ M ++  I    +HY C+VD+L R G L++A   I+ MP  P   I+G LL  CR+H 
Sbjct: 472 FNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHH 531

Query: 356 RLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSW 415
            + LAE  A  +F L P N  G YV +ANIYA  +KW+ V R+R  + +  + K PG SW
Sbjct: 532 DVKLAEKVAEKVFELEPEN-TGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSW 590

Query: 416 IEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLL 475
           IE+   V+ F +GD  +PE  +I   L+++  RM   GY P  ++AL    E  KE+ L 
Sbjct: 591 IEIKGRVNIFVAGDSSNPETENIEAFLRKVRARMIEEGYSPLTKYALIDAEEMEKEEALC 650

Query: 476 FHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFK 535
            HSEKLA+A G+I    G  IRV KNLRVCGDCH   K++S + +REI++RD+ RFH FK
Sbjct: 651 GHSEKLAMALGIISSGHGKIIRVTKNLRVCGDCHEMAKFMSKLTRREIVLRDSNRFHQFK 710

Query: 536 DGTCSCGDYW 545
           DG CSC  +W
Sbjct: 711 DGHCSCRGFW 720



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 94/354 (26%), Positives = 180/354 (50%), Gaps = 30/354 (8%)

Query: 30  FDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK----DTASWNTMISGFVQKKN 85
           FD++     + +NI+++  L  S D   +   F+++       D+ +++ +   F   ++
Sbjct: 1   FDEVKIEKALFWNILMN-ELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRS 59

Query: 86  MAKARDL--FL---AMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMIS 140
           +     L  F+      E+NSV  +++++ Y++  ++D A ++F     + V++W ++I+
Sbjct: 60  VHGGEQLHGFILKSGFGERNSVG-NSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIIN 118

Query: 141 GYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK 200
           GY     V N  AE GL +   M+  GI  + +++ SV  GC+    + LG+ VH +  K
Sbjct: 119 GY-----VSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVK 173

Query: 201 SPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRL 260
           +   ++      L+ MY KCGDL+ A  +F E+  + VV++ +MI+GYA+ G   +A++L
Sbjct: 174 ACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKL 233

Query: 261 FDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSM-VNDYGIAAKPDHYTCMVDLL 319
           F++M++EG+ PD  T  A+L  C    L+D G +  + +  ND G      +   ++D+ 
Sbjct: 234 FEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSN--ALMDMY 291

Query: 320 GRAGKLVEAVDLIKKMPFK---PQPAIFGTLLSACRVHKRLDLAEFAAMNLFNL 370
            + G + EA  +  +M  K       I G     C  ++        A++LFNL
Sbjct: 292 AKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANE--------ALSLFNL 337



 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 88/327 (26%), Positives = 168/327 (51%), Gaps = 15/327 (4%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK- 68
           NS++A + K + ++  A+++FD++ + DV+S+N +++  + N         F Q L    
Sbjct: 83  NSLVAFYLKNQ-RVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGI 141

Query: 69  --DTASWNTMISGFVQKKNMAKARDL----FLAMPEKNSVSWSAMISGYIECGQLDKAVE 122
             D A+  ++ +G    + ++  R +      A   +     + ++  Y +CG LD A  
Sbjct: 142 EIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKA 201

Query: 123 LFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGC 182
           +F+    +SVV++T+MI+GY + G      A + +KL   M   GI P+  ++++VL  C
Sbjct: 202 VFREMSDRSVVSYTSMIAGYAREGL-----AGEAVKLFEEMEEEGISPDVYTVTAVLNCC 256

Query: 183 SHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWN 242
           +    L  GK+VH+ + ++ L  D      L+ MY KCG +++A  +F E++ KD+++WN
Sbjct: 257 ARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWN 316

Query: 243 AMISGYAQHGKGEKALRLFDKMKDEG-MKPDSITFVALLLACNHAGLVDLGIQYFDSMVN 301
            +I GY+++    +AL LF+ + +E    PD  T   +L AC      D G +    ++ 
Sbjct: 317 TIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMR 376

Query: 302 DYGIAAKPDHYTCMVDLLGRAGKLVEA 328
           + G  +       +VD+  + G L+ A
Sbjct: 377 N-GYFSDRHVANSLVDMYAKCGALLLA 402


>gi|449477559|ref|XP_004155057.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 562

 Score =  367 bits (943), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 184/441 (41%), Positives = 265/441 (60%), Gaps = 6/441 (1%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI 164
           +A++  Y  C  +  A +LF   P ++ V W A+I+GY       N      +   R M+
Sbjct: 128 TALVHLYCTCLSISDASQLFDEMPERNAVTWNALITGY-----THNRKFVKAIDAFRGML 182

Query: 165 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 224
             G +P+  ++  VL  CSHL +   GK +H+ ++ + L  +    T LI MY KCG + 
Sbjct: 183 ADGAQPSERTVVVVLSACSHLGAFNQGKWIHEFIYHNRLRLNVFVGTALIDMYAKCGAVY 242

Query: 225 DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 284
           +  K+F EI+ K+V TWN +ISGYA +G+G+ AL+ F +M  E  KPD +TF+ +L AC 
Sbjct: 243 EVEKVFEEIREKNVYTWNVLISGYAMNGQGDAALQAFSRMLMENFKPDEVTFLGVLCACC 302

Query: 285 HAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIF 344
           H GLV  G   F SM   +G+  + +HY CMVDLLGRAG L EA++LI+ M  +P P I+
Sbjct: 303 HQGLVTEGRWQFMSMKQQFGLQPRIEHYGCMVDLLGRAGLLEEALELIQSMSIEPDPIIW 362

Query: 345 GTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKE 404
             LL ACRVH    L E+    L  L P N    YV L+NIY+  ++W +V ++R  M  
Sbjct: 363 RALLCACRVHGNTKLGEYIIKRLIELEPNNGEN-YVLLSNIYSRERRWAEVGKLRGMMSL 421

Query: 405 NNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHA 464
             + K+PG S IE+  VV+EF + +   PE  +I+++L  L K++K  GYV   + AL+ 
Sbjct: 422 RGIRKVPGCSSIEINNVVYEFVASNDRKPEFEAIYKQLDNLIKKLKENGYVTGTDMALYD 481

Query: 465 VGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREII 524
           + +E KE  +++HSEKLA+AFGL+  PL   +R+ KNLR+C DCH   K +S + KR I+
Sbjct: 482 IEKEEKEHSVMYHSEKLALAFGLLNSPLDCTLRIVKNLRICLDCHEFFKVLSLVYKRYIV 541

Query: 525 VRDTTRFHHFKDGTCSCGDYW 545
           VRD  RFHHF +G CSC DYW
Sbjct: 542 VRDRNRFHHFYEGFCSCRDYW 562



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 64/239 (26%), Positives = 113/239 (47%), Gaps = 9/239 (3%)

Query: 136 TAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVH 195
            +MI  Y+      NS     L +  +M    I P++S+  +VL   + L    +GK +H
Sbjct: 58  NSMIRTYLDLNKHLNS-----LYIFALMHKFSILPDSSTFPAVLKATAQLCDTGVGKMIH 112

Query: 196 QLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGE 255
            +V +     D    T L+ +YC C  + DA +LF E+  ++ VTWNA+I+GY  + K  
Sbjct: 113 GIVIQMGFICDVYTSTALVHLYCTCLSISDASQLFDEMPERNAVTWNALITGYTHNRKFV 172

Query: 256 KALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCM 315
           KA+  F  M  +G +P   T V +L AC+H G  + G ++    +    +       T +
Sbjct: 173 KAIDAFRGMLADGAQPSERTVVVVLSACSHLGAFNQG-KWIHEFIYHNRLRLNVFVGTAL 231

Query: 316 VDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLD--LAEFAAMNLFNLNP 372
           +D+  + G + E   + +++  K     +  L+S   ++ + D  L  F+ M + N  P
Sbjct: 232 IDMYAKCGAVYEVEKVFEEIREK-NVYTWNVLISGYAMNGQGDAALQAFSRMLMENFKP 289


>gi|49333376|gb|AAT64016.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 805

 Score =  367 bits (943), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 194/547 (35%), Positives = 309/547 (56%), Gaps = 35/547 (6%)

Query: 7   VNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLN--SDDVVAAFDFFQR 64
           +N+++ L     + G L  A  +F+K+ + +VVS+  M++    +  SD  +      ++
Sbjct: 286 INFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIKLLQQMEK 345

Query: 65  LPIK-DTASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMISGYIECGQLDK 119
             +K D  +  +++    +  ++   +D+   +     E N    +A++  Y +CG ++ 
Sbjct: 346 EGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYAKCGSMEA 405

Query: 120 AVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVL 179
           A  +F    VK +++W  MI                            ++P++ +++ VL
Sbjct: 406 ANSVFSTMVVKDIISWNTMIGE--------------------------LKPDSRTMACVL 439

Query: 180 LGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVV 239
             C+ LS+L+ GK++H  + ++    D      L+ +Y KCG L  A  LF  I  KD+V
Sbjct: 440 PACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLV 499

Query: 240 TWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSM 299
           +W  MI+GY  HG G +A+  F++M+D G++PD ++F+++L AC+H+GL++ G ++F  M
Sbjct: 500 SWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIM 559

Query: 300 VNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDL 359
            ND+ I  K +HY CMVDLL R G L +A + I+ +P  P   I+G LL  CR +  ++L
Sbjct: 560 KNDFNIEPKLEHYACMVDLLSRTGNLSKAYEFIETLPIAPDATIWGALLCGCRNYHDIEL 619

Query: 360 AEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVG 419
           AE  A  +F L P N +G YV LANIYA  +KW++V R+R  + +  + K PG SWIE+ 
Sbjct: 620 AEKVAERVFELEPEN-SGYYVLLANIYAEAEKWEEVKRLREKIGKQGLRKNPGCSWIEIK 678

Query: 420 TVVHEFRSGDR-VHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHS 478
             V+ F SG+   HP   +I   LK++ ++MK  G+ P  ++AL    E  KE  L  HS
Sbjct: 679 GKVNLFVSGNNSSHPHSKNIESLLKKMRRKMKEEGHFPKTKYALINADEMQKEMALCGHS 738

Query: 479 EKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGT 538
           EKLA+AFGL+ +P    IRV KNLRVCGDCH   K++S   +REI++RD  RFHHFKDG 
Sbjct: 739 EKLAMAFGLLTLPPRKTIRVTKNLRVCGDCHEMAKFMSKETRREIVLRDPNRFHHFKDGY 798

Query: 539 CSCGDYW 545
           CSC  +W
Sbjct: 799 CSCRGFW 805



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 90/313 (28%), Positives = 155/313 (49%), Gaps = 47/313 (15%)

Query: 76  MISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKS---- 131
           ++S +    ++ + R +F  M +KN   W+ M+S Y + G   +++ LFK+   K     
Sbjct: 140 LVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGK 199

Query: 132 ----------------VVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSL 175
                           V++W +MISGY     V N   E GL + + M+ LGI  + +++
Sbjct: 200 RPESAFELFDKLCDRDVISWNSMISGY-----VSNGLTERGLGIYKQMMYLGIDVDLATI 254

Query: 176 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR 235
            SVL+GC++  +L LGK VH L  KS   +       L+ MY KCGDL+ A ++F ++  
Sbjct: 255 ISVLVGCANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGE 314

Query: 236 KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQY 295
           ++VV+W +MI+GY + G+ + A++L  +M+ EG+K D +   ++L AC  +G +D G   
Sbjct: 315 RNVVSWTSMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKD- 373

Query: 296 FDSMVNDYGIA--AKPDHYTC--MVDLLGRAGKLVEAVDLIKKM-------------PFK 338
               V+DY  A   + + + C  ++D+  + G +  A  +   M               K
Sbjct: 374 ----VHDYIKANNMESNLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMIGELK 429

Query: 339 PQPAIFGTLLSAC 351
           P       +L AC
Sbjct: 430 PDSRTMACVLPAC 442



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 99/384 (25%), Positives = 167/384 (43%), Gaps = 85/384 (22%)

Query: 13  LAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLS------------CIL-------LNSD 53
           L  F    G LK+ + +FD + + +V  +N M+S            C+        +   
Sbjct: 140 LVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGK 199

Query: 54  DVVAAFDFFQRLPIKDTASWNTMISGFVQ-----------KKNMAKARDLFLA------M 96
              +AF+ F +L  +D  SWN+MISG+V            K+ M    D+ LA      +
Sbjct: 200 RPESAFELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLV 259

Query: 97  PEKNSVSWS----------------------AMISGYIECGQLDKAVELFKVAPVKSVVA 134
              NS + S                       ++  Y +CG LD A+ +F+    ++VV+
Sbjct: 260 GCANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVS 319

Query: 135 WTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQV 194
           WT+MI+GY + G      ++  +KLL+ M   G++ +  +++S+L  C+   SL  GK V
Sbjct: 320 WTSMIAGYTRDGR-----SDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDV 374

Query: 195 HQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKG 254
           H  +  + +  +      L+ MY KCG +E A  +F  +  KD+++WN MI        G
Sbjct: 375 HDYIKANNMESNLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMI--------G 426

Query: 255 EKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTC 314
           E             +KPDS T   +L AC     ++ G +    ++ + G ++       
Sbjct: 427 E-------------LKPDSRTMACVLPACASLSALERGKEIHGYILRN-GYSSDRHVANA 472

Query: 315 MVDLLGRAGKLVEAVDLIKKMPFK 338
           +VDL  + G L  A  L   +P K
Sbjct: 473 LVDLYVKCGVLGLARLLFDMIPSK 496



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 49/213 (23%), Positives = 91/213 (42%), Gaps = 52/213 (24%)

Query: 174 SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI 233
           + SSVL  C+ L S   GK+VH ++  + +  D      L+S Y  CGDL++  ++F  +
Sbjct: 101 TYSSVLQLCAGLKSFTDGKKVHSIIKSNSVGVDEALGLKLVSFYATCGDLKEGRRVFDTM 160

Query: 234 QRK---------------------------------------------------DVVTWN 242
           ++K                                                   DV++WN
Sbjct: 161 EKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESAFELFDKLCDRDVISWN 220

Query: 243 AMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVND 302
           +MISGY  +G  E+ L ++ +M   G+  D  T +++L+ C ++G + LG +   S+   
Sbjct: 221 SMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLG-KAVHSLAIK 279

Query: 303 YGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335
                + +    ++D+  + G L  A+ + +KM
Sbjct: 280 SSFERRINFSNTLLDMYSKCGDLDGALRVFEKM 312


>gi|357507741|ref|XP_003624159.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87162577|gb|ABD28372.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355499174|gb|AES80377.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 755

 Score =  367 bits (943), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 206/591 (34%), Positives = 320/591 (54%), Gaps = 63/591 (10%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
           NS+L  + K + + + A+  F+ + + DVVS+NIM+    L   DV  + + F+  P KD
Sbjct: 173 NSILDLYLKCK-EFEYAESFFELMIEKDVVSWNIMIGA-YLREGDVEKSLEMFRNFPNKD 230

Query: 70  TASWNTMISGFVQKKNMAKARDLFLAM----PEKNSVSWS-------------------- 105
             SWNT+I G +Q      A +    M     E + V++S                    
Sbjct: 231 VVSWNTIIDGLIQCGYERLALEQLYCMVAHGTEFSPVTFSIALILVSSLSLVEVGRQLHG 290

Query: 106 ---------------AMISGYIECGQLDKAVELFKVAPVK----------------SVVA 134
                          +++  Y +CG++DKA  + K  P+                  +V+
Sbjct: 291 RVLTFGLNSDGYIRSSLVEMYGKCGRMDKASTILKDVPLNFLRKGNFGVTCKEPKARMVS 350

Query: 135 WTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQV 194
           W++M+SGY     V N   EDG+K  R M+   I  +  ++++++  C++   L+ GKQ+
Sbjct: 351 WSSMVSGY-----VWNGKYEDGMKTFRSMVCELIVVDIRTVATIISACANAGILEFGKQI 405

Query: 195 HQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKG 254
           H  + K  L  D    + LI MY K G L+DA  +F +I+  +VV W +MISG A HG+G
Sbjct: 406 HAYIQKIGLRIDAYVGSSLIDMYSKSGSLDDALMIFEQIKEPNVVLWTSMISGCALHGQG 465

Query: 255 EKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTC 314
           ++A+ LF+ M + G+ P+ +TFV +L AC+H GL++ G +YF  M + Y I  + +HYT 
Sbjct: 466 KEAISLFEGMLNLGIIPNEVTFVGVLNACSHVGLIEEGCRYFRMMKDTYHINPEVEHYTS 525

Query: 315 MVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPAN 374
           MV+L GRAG L+EA + I +       +++ + LS+CR+HK  ++ +  +  L    P++
Sbjct: 526 MVNLYGRAGHLIEAKNFIFENSISHFTSVWRSFLSSCRLHKNFNMGKSVSEMLLQSAPSD 585

Query: 375 AAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPE 434
               Y+ L+N+ ++  +WD+ A +R  M +  V K PG SW+++   +H F  GDR HP+
Sbjct: 586 PDA-YILLSNMCSSNHQWDEAAIVRSLMYQRGVKKQPGQSWVQLKDQIHSFTVGDRSHPQ 644

Query: 435 LVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGT 494
              I+  L  L  R+K  GY  D +  +  V EE  E L+  HSEKLA+ F +I     T
Sbjct: 645 DKEIYSYLDSLIGRLKEIGYSLDAKLVMQDVEEEQGEVLISHHSEKLALVFSIINTSPRT 704

Query: 495 PIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           PIR+ KNLR+C DCH   KY S + +REIIVRDT RFHHFK  +CSCG+YW
Sbjct: 705 PIRIMKNLRICNDCHNFFKYASQLLEREIIVRDTHRFHHFKQSSCSCGEYW 755



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 93/374 (24%), Positives = 178/374 (47%), Gaps = 30/374 (8%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCIL--LNSDDVVAAFDF 61
           K T  W  +++GFA+  G  +    LF ++           LS +L   + ++ +     
Sbjct: 96  KNTQTWTILISGFARAAGSSELVFSLFREMQADGACPNQYTLSSVLKCCSRENNIQFGKG 155

Query: 62  FQRLPIK-----DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQ 116
                ++     D    N+++  +++ K    A   F  M EK+ VSW+ MI  Y+  G 
Sbjct: 156 IHAWILRNGVGGDVVLENSILDLYLKCKEFEYAESFFELMIEKDVVSWNIMIGAYLREGD 215

Query: 117 LDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLS 176
           ++K++E+F+  P K VV+W  +I G ++ GY         L+ L  M+  G   +  + S
Sbjct: 216 VEKSLEMFRNFPNKDVVSWNTIIDGLIQCGY-----ERLALEQLYCMVAHGTEFSPVTFS 270

Query: 177 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF----LE 232
             L+  S LS +++G+Q+H  V    L  D    + L+ MY KCG ++ A  +     L 
Sbjct: 271 IALILVSSLSLVEVGRQLHGRVLTFGLNSDGYIRSSLVEMYGKCGRMDKASTILKDVPLN 330

Query: 233 IQRKD------------VVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 280
             RK             +V+W++M+SGY  +GK E  ++ F  M  E +  D  T   ++
Sbjct: 331 FLRKGNFGVTCKEPKARMVSWSSMVSGYVWNGKYEDGMKTFRSMVCELIVVDIRTVATII 390

Query: 281 LACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQ 340
            AC +AG+++ G Q   + +   G+       + ++D+  ++G L +A+ + +++  +P 
Sbjct: 391 SACANAGILEFGKQ-IHAYIQKIGLRIDAYVGSSLIDMYSKSGSLDDALMIFEQIK-EPN 448

Query: 341 PAIFGTLLSACRVH 354
             ++ +++S C +H
Sbjct: 449 VVLWTSMISGCALH 462



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/267 (25%), Positives = 119/267 (44%), Gaps = 36/267 (13%)

Query: 103 SWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRM 162
           S + +++ Y++   LD A +LF     K+   WT +ISG+ +        +E    L R 
Sbjct: 69  SANYLLTLYVKSSNLDHAHKLFDEITHKNTQTWTILISGFARAA----GSSELVFSLFRE 124

Query: 163 MIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGD 222
           M   G  PN  +LSSVL  CS  +++Q GK +H  + ++ +  D      ++ +Y KC +
Sbjct: 125 MQADGACPNQYTLSSVLKCCSRENNIQFGKGIHAWILRNGVGGDVVLENSILDLYLKCKE 184

Query: 223 LEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDK------------------- 263
            E A   F  +  KDVV+WN MI  Y + G  EK+L +F                     
Sbjct: 185 FEYAESFFELMIEKDVVSWNIMIGAYLREGDVEKSLEMFRNFPNKDVVSWNTIIDGLIQC 244

Query: 264 ------------MKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDH 311
                       M   G +   +TF   L+  +   LV++G Q     V  +G+ +    
Sbjct: 245 GYERLALEQLYCMVAHGTEFSPVTFSIALILVSSLSLVEVGRQ-LHGRVLTFGLNSDGYI 303

Query: 312 YTCMVDLLGRAGKLVEAVDLIKKMPFK 338
            + +V++ G+ G++ +A  ++K +P  
Sbjct: 304 RSSLVEMYGKCGRMDKASTILKDVPLN 330



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 52/102 (50%), Gaps = 1/102 (0%)

Query: 192 KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQ- 250
           + +H   FK    +   +   L+++Y K  +L+ A KLF EI  K+  TW  +ISG+A+ 
Sbjct: 52  RALHGHYFKKGSLQILNSANYLLTLYVKSSNLDHAHKLFDEITHKNTQTWTILISGFARA 111

Query: 251 HGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 292
            G  E    LF +M+ +G  P+  T  ++L  C+    +  G
Sbjct: 112 AGSSELVFSLFREMQADGACPNQYTLSSVLKCCSRENNIQFG 153



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 62/299 (20%), Positives = 121/299 (40%), Gaps = 67/299 (22%)

Query: 7   VNWNSVLAGFAKQRGKLKDAQELFDK-IPQPDVVSYNIMLSCILLNSDDVVAAFD----- 60
           V+W+S+++G+    GK +D  + F   + +  VV    + + I   ++  +  F      
Sbjct: 349 VSWSSMVSGYV-WNGKYEDGMKTFRSMVCELIVVDIRTVATIISACANAGILEFGKQIHA 407

Query: 61  FFQRLPIK-DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDK 119
           + Q++ ++ D    +++I  + +  ++  A  +F  + E N V W++MISG    GQ  +
Sbjct: 408 YIQKIGLRIDAYVGSSLIDMYSKSGSLDDALMIFEQIKEPNVVLWTSMISGCALHGQGKE 467

Query: 120 AVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVL 179
           A+ LF+                                     M+ LGI PN  +   VL
Sbjct: 468 AISLFE------------------------------------GMLNLGIIPNEVTFVGVL 491

Query: 180 LGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTP-------LISMYCKCGDLEDACKLFLE 232
             CSH+  ++ G +  +++      KDT  + P       ++++Y + G L +A     E
Sbjct: 492 NACSHVGLIEEGCRYFRMM------KDTYHINPEVEHYTSMVNLYGRAGHLIEAKNFIFE 545

Query: 233 IQRKDVVT-WNAMISGYAQH-----GKGEKALRLFDKMKDEGMKPDSITFVALLLACNH 285
                  + W + +S    H     GK    + L     D    PD+   ++ + + NH
Sbjct: 546 NSISHFTSVWRSFLSSCRLHKNFNMGKSVSEMLLQSAPSD----PDAYILLSNMCSSNH 600


>gi|297837569|ref|XP_002886666.1| hypothetical protein ARALYDRAFT_475343 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297332507|gb|EFH62925.1| hypothetical protein ARALYDRAFT_475343 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 608

 Score =  367 bits (943), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 192/453 (42%), Positives = 276/453 (60%), Gaps = 27/453 (5%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI 164
           + +I  Y  CG LD A ++F   P +S+V+W +MI   ++ G  +++     L+L R M 
Sbjct: 171 NGLIHFYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRVGEYDSA-----LQLFRDM- 224

Query: 165 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKS---PLCKDTTALTPLISMYCKCG 221
                P+  ++ SVL  C+ L SL LG   H  + ++    +  D      LI MYCKCG
Sbjct: 225 QKSFEPDGYTMQSVLSACAGLGSLSLGTWSHVFLLRNCDVDVAMDVLIKNSLIEMYCKCG 284

Query: 222 DLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEG--MKPDSITFVAL 279
            L  A ++F  +++ D+ +WNAMI G+A HGK E+A+  FD M  EG  +KP+S+TFVAL
Sbjct: 285 SLRMAEQVFQGMRKHDLASWNAMILGFATHGKAEEAMNCFDCMVKEGKNVKPNSVTFVAL 344

Query: 280 LLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKP 339
           L+ACNH G+V+ G QYFD MV +YGI    +HY C++DLL RAG + EA+D++  MP KP
Sbjct: 345 LIACNHRGMVNKGRQYFDMMVREYGIEPALEHYGCIIDLLARAGYITEAIDMVMSMPMKP 404

Query: 340 QPAIFGTLLSAC-RVHKRLDLAEFAAMNLFNL------NPANAAGCYVQLANIYAAMKKW 392
              I+ +LL AC +    ++L+E  A N+         + +N +G YV L+ +YA+  +W
Sbjct: 405 DAVIWRSLLDACCKKGASVELSEEIARNIIGTMEDNQSSNSNCSGAYVLLSRVYASANRW 464

Query: 393 DDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLA 452
           +DV  +R  M ++ + K PG S IE+  + +EF +GD  HP+   I+++LK ++ R++  
Sbjct: 465 NDVGIVRKLMSDHGIRKEPGCSSIEINGISNEFFAGDTSHPQTKQIYQQLKVIDDRLR-- 522

Query: 453 GYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRAT 512
                    + A  +  KE  L  HSE+LAIAFGLI +P  TPIR+FKNLRVC DCH  T
Sbjct: 523 -------SIVDATNDSSKEYSLRLHSERLAIAFGLISLPPQTPIRIFKNLRVCSDCHEVT 575

Query: 513 KYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           K IS +   EIIVRD  RFHHFKDG+CSC DYW
Sbjct: 576 KLISKVFNTEIIVRDRVRFHHFKDGSCSCLDYW 608



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 53/177 (29%), Positives = 83/177 (46%), Gaps = 6/177 (3%)

Query: 117 LDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIR-PNASSL 175
           ++ A  +F      S   W  +I         + S  E+   L R M+  G   P+  + 
Sbjct: 80  VNYAFRVFDSIENHSSFMWNTLIRACAH----DVSRKEEAFMLYRKMLERGESAPDKHTF 135

Query: 176 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR 235
             VL  C+++  L  GKQVH  + K     D      LI  Y  CG L+ A K+F E+  
Sbjct: 136 PFVLKACAYIFGLSEGKQVHCQIVKHGFSGDVYVNNGLIHFYGSCGCLDLARKVFDEMPE 195

Query: 236 KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 292
           + +V+WN+MI    + G+ + AL+LF  M+ +  +PD  T  ++L AC   G + LG
Sbjct: 196 RSLVSWNSMIDALVRVGEYDSALQLFRDMQ-KSFEPDGYTMQSVLSACAGLGSLSLG 251



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 68/327 (20%), Positives = 147/327 (44%), Gaps = 40/327 (12%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILL--NSDDVVAAFDFFQRLPI 67
           N+ L  F    G L  A+++FD++P+  +VS+N M+  ++     D  +  F   Q+   
Sbjct: 170 NNGLIHFYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRVGEYDSALQLFRDMQKSFE 229

Query: 68  KDTASWNTMISGFVQKKNMA----------KARDLFLAMPEKNSVSWSAMISGYIECGQL 117
            D  +  +++S      +++          +  D+ +AM   + +  +++I  Y +CG L
Sbjct: 230 PDGYTMQSVLSACAGLGSLSLGTWSHVFLLRNCDVDVAM---DVLIKNSLIEMYCKCGSL 286

Query: 118 DKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI--GLGIRPNASSL 175
             A ++F+      + +W AMI G+   G      AE+ +     M+  G  ++PN+ + 
Sbjct: 287 RMAEQVFQGMRKHDLASWNAMILGFATHGK-----AEEAMNCFDCMVKEGKNVKPNSVTF 341

Query: 176 SSVLLGCSHLSSLQLGKQVHQLVFK----SPLCKDTTALTPLISMYCKCGDLEDACKLFL 231
            ++L+ C+H   +  G+Q   ++ +     P  +    +  L++   + G + +A  + +
Sbjct: 342 VALLIACNHRGMVNKGRQYFDMMVREYGIEPALEHYGCIIDLLA---RAGYITEAIDMVM 398

Query: 232 EIQRK-DVVTWNAMISGYAQHGKG-----EKALRLFDKMKDEGMKPDSITFVALLLACNH 285
            +  K D V W +++    + G       E A  +   M+D      + +   +LL+  +
Sbjct: 399 SMPMKPDAVIWRSLLDACCKKGASVELSEEIARNIIGTMEDNQSSNSNCSGAYVLLSRVY 458

Query: 286 AGL---VDLGIQYFDSMVNDYGIAAKP 309
           A      D+GI     +++D+GI  +P
Sbjct: 459 ASANRWNDVGI--VRKLMSDHGIRKEP 483


>gi|296089078|emb|CBI38781.3| unnamed protein product [Vitis vinifera]
          Length = 589

 Score =  367 bits (943), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 201/541 (37%), Positives = 299/541 (55%), Gaps = 50/541 (9%)

Query: 49  LLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSW 104
           L +S D+  A   F ++   D    NTMI G+ + +N  +A  L+  M E+    ++ ++
Sbjct: 55  LSHSGDLNYARKLFTQMQNPDPFICNTMIRGYARSQNPYEAVSLYYFMVERGVPVDNYTY 114

Query: 105 -----------------------------------SAMISGYIECGQLDKAVELFKVAPV 129
                                              +A+I  Y  CG    A ++F  + V
Sbjct: 115 PFVLAACARLGAVKLGRRFHCEVLKNGFGSDLFVINALIQFYHNCGSFGCACDVFDESTV 174

Query: 130 KSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGL-GIRPNASSLSSVLLGCSHLSSL 188
           + VV W  MI+ ++  G      +E    LL  M  L  +RP+  ++ S++  C+ L +L
Sbjct: 175 RDVVTWNIMINAHLNKGL-----SEKAFDLLDEMTKLDNLRPDEVTMVSLVPACAQLGNL 229

Query: 189 QLGKQVHQL---VFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMI 245
           + GK +H     + K  +  D    T L+ MY KCG ++ A ++F  ++ ++V TWNA+I
Sbjct: 230 ERGKFLHSYSKELDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNALI 289

Query: 246 SGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGI 305
            G A HG GE A+ LFD+M+ + + PD +TF+ALL AC+HAGLVD G+  F +M N + I
Sbjct: 290 GGLAMHGHGEDAISLFDQMEHDKLMPDDVTFIALLCACSHAGLVDEGLAMFQAMKNKFQI 349

Query: 306 AAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAM 365
             + +HY C+VDLL RA K+ +A+  I+ MP K    ++ TLL ACR     DLAE    
Sbjct: 350 EPRMEHYGCVVDLLCRARKVDDALAFIENMPIKANSVLWATLLGACRSGGHFDLAEKIGR 409

Query: 366 NLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEF 425
            +  L P ++ G YV L+N+YA + +WD   ++R  MK   + K PG SWIE+  ++H+F
Sbjct: 410 RVIELEP-DSCGRYVMLSNLYAGVSQWDHALKLRKQMKNKGIEKTPGCSWIELNGMIHQF 468

Query: 426 RSGDRVHPELVSIHEKLKELEKRMKL-AGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIA 484
            +GDR H +   I+  ++E+ +R+ L  G+VP     L  + EE KE  L  HSEKLAIA
Sbjct: 469 VAGDRSHLQTEQIYAMIEEMTRRVNLDGGHVPGTANVLFDIEEEEKEHSLFLHSEKLAIA 528

Query: 485 FGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDY 544
            GLI  P G+PIR+ KNLRVC DCH   K  S +  REI+ RD +RFHHFK+G+CSC D+
Sbjct: 529 LGLISTPSGSPIRIVKNLRVCNDCHSFLKVTSKVYNREIVARDRSRFHHFKEGSCSCMDF 588

Query: 545 W 545
           W
Sbjct: 589 W 589



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/142 (31%), Positives = 73/142 (51%), Gaps = 5/142 (3%)

Query: 168 IRPNA--SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYC--KCGDL 223
           I+P++  + L SV    +H +S+   KQ H L+ ++ L  +    + LIS       GDL
Sbjct: 2   IKPSSKCTKLISVDFLKTHCTSISKTKQAHALLLRTHLLHNPLFSSKLISFLALSHSGDL 61

Query: 224 EDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC 283
             A KLF ++Q  D    N MI GYA+     +A+ L+  M + G+  D+ T+  +L AC
Sbjct: 62  NYARKLFTQMQNPDPFICNTMIRGYARSQNPYEAVSLYYFMVERGVPVDNYTYPFVLAAC 121

Query: 284 NHAGLVDLGIQYF-DSMVNDYG 304
              G V LG ++  + + N +G
Sbjct: 122 ARLGAVKLGRRFHCEVLKNGFG 143



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 62/283 (21%), Positives = 119/283 (42%), Gaps = 34/283 (12%)

Query: 11  SVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP---- 66
           + L  F    G    A ++FD+    DVV++NIM++   LN      AFD    +     
Sbjct: 150 NALIQFYHNCGSFGCACDVFDESTVRDVVTWNIMINA-HLNKGLSEKAFDLLDEMTKLDN 208

Query: 67  -IKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNS-------VSWSAMISGYIECGQLD 118
              D  +  +++    Q  N+ + + L     E +        V  +A++  Y +CG +D
Sbjct: 209 LRPDEVTMVSLVPACAQLGNLERGKFLHSYSKELDKFEINCDLVLETALVDMYAKCGSID 268

Query: 119 KAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSV 178
            A+++F+   V++V  W A+I G    G+      ED + L   M    + P+  +  ++
Sbjct: 269 LALQVFRRMRVRNVFTWNALIGGLAMHGH-----GEDAISLFDQMEHDKLMPDDVTFIAL 323

Query: 179 LLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMY-------CKCGDLEDACKLFL 231
           L  CSH   +  G  + Q +      K+   + P +  Y       C+   ++DA     
Sbjct: 324 LCACSHAGLVDEGLAMFQAM------KNKFQIEPRMEHYGCVVDLLCRARKVDDALAFIE 377

Query: 232 EIQRK-DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDS 273
            +  K + V W  ++      G  + A ++  ++ +  ++PDS
Sbjct: 378 NMPIKANSVLWATLLGACRSGGHFDLAEKIGRRVIE--LEPDS 418


>gi|294464140|gb|ADE77588.1| unknown [Picea sitchensis]
          Length = 312

 Score =  367 bits (943), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 177/313 (56%), Positives = 221/313 (70%), Gaps = 1/313 (0%)

Query: 233 IQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 292
           +  K+VV+WNAMI GY  HG GE AL LF +M+  G+KP+ ITF+++L AC+HAGLVD G
Sbjct: 1   MSNKNVVSWNAMIVGYGMHGHGEDALVLFTQMQQRGVKPNEITFISVLSACSHAGLVDEG 60

Query: 293 IQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACR 352
            + ++ M  DY I    +HY CMVDLLGRAG L EA D I+KMP +P  +++G  L +CR
Sbjct: 61  WKCYNCMTLDYAITPTVEHYACMVDLLGRAGHLNEAWDFIEKMPIEPGASVWGAFLGSCR 120

Query: 353 VHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPG 412
           +H  ++L E  A  L NL+P NA G YV L+NIYAA  +WDDVA++R  MKE +V K PG
Sbjct: 121 IHCNIELGERVAELLLNLDPDNA-GYYVLLSNIYAAAGRWDDVAKVRKMMKEKDVKKSPG 179

Query: 413 YSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQ 472
            S IEV   +H F  GD  HP+  +I+  L+ L ++M+  GYVP  +F LH V EE+KE 
Sbjct: 180 CSLIEVNNKLHSFVVGDISHPQTEAIYAMLETLARQMEAVGYVPCTDFVLHDVEEEIKEN 239

Query: 473 LLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFH 532
           +L  HSEKLAIAFGLI    GT IR+ KNLRVCGDCH ATK+IS I KREII+RD  RFH
Sbjct: 240 MLFAHSEKLAIAFGLISTRSGTSIRITKNLRVCGDCHSATKFISKIVKREIIMRDLNRFH 299

Query: 533 HFKDGTCSCGDYW 545
           HFKDG CSCGDYW
Sbjct: 300 HFKDGLCSCGDYW 312



 Score = 44.3 bits (103), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 41/181 (22%), Positives = 79/181 (43%), Gaps = 20/181 (11%)

Query: 68  KDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISGYIECGQLDKAVEL 123
           K+  SWN MI G+    +   A  LF  M ++    N +++ +++S     G +D+  + 
Sbjct: 4   KNVVSWNAMIVGYGMHGHGEDALVLFTQMQQRGVKPNEITFISVLSACSHAGLVDEGWKC 63

Query: 124 FKV-----APVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSV 178
           +       A   +V  +  M+    + G++  +W          +  + I P AS   + 
Sbjct: 64  YNCMTLDYAITPTVEHYACMVDLLGRAGHLNEAW--------DFIEKMPIEPGASVWGAF 115

Query: 179 LLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLIS-MYCKCGDLEDACKLFLEIQRKD 237
           L  C    +++LG++V +L+    L  D      L+S +Y   G  +D  K+   ++ KD
Sbjct: 116 LGSCRIHCNIELGERVAELLLN--LDPDNAGYYVLLSNIYAAAGRWDDVAKVRKMMKEKD 173

Query: 238 V 238
           V
Sbjct: 174 V 174


>gi|356553444|ref|XP_003545066.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Glycine max]
          Length = 1033

 Score =  367 bits (942), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 211/551 (38%), Positives = 326/551 (59%), Gaps = 27/551 (4%)

Query: 10   NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
            N++L  +A +   +++ Q++F  +P+ D VS+N  +  +  +   V+ A  +F  +    
Sbjct: 495  NALLTLYA-ETDCMEEYQKVFFLMPEYDQVSWNSFIGALATSEASVLQAIKYFLEMM--- 550

Query: 70   TASWNTMISGFVQ------------KKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQL 117
             A W      F+                   A  L  ++ + N++  + +++ Y +C Q+
Sbjct: 551  QAGWKPNRVTFINILSAVSSLSLLELGRQIHALILKHSVADDNAIE-NTLLAFYGKCEQM 609

Query: 118  DKAVELF-KVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLS 176
            +    +F +++  +  V+W AMISGY+  G +  +     + L+ +M+  G R +  +L+
Sbjct: 610  EDCEIIFSRMSERRDEVSWNAMISGYIHNGILHKA-----MGLVWLMMQKGQRLDDFTLA 664

Query: 177  SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK 236
            +VL  C+ +++L+ G +VH    ++ L  +    + L+ MY KCG ++ A + F  +  +
Sbjct: 665  TVLSACASVATLERGMEVHACAIRACLEAEVVVGSALVDMYAKCGKIDYASRFFELMPVR 724

Query: 237  DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYF 296
            ++ +WN+MISGYA+HG G KAL+LF +MK  G  PD +TFV +L AC+H GLVD G ++F
Sbjct: 725  NIYSWNSMISGYARHGHGGKALKLFTQMKQHGQLPDHVTFVGVLSACSHVGLVDEGFEHF 784

Query: 297  DSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSA-CRVHK 355
             SM   Y +A + +H++CMVDLLGRAG + +  + IK MP  P   I+ T+L A CR + 
Sbjct: 785  KSMGEVYELAPRIEHFSCMVDLLGRAGDVKKLEEFIKTMPMNPNALIWRTILGACCRANS 844

Query: 356  R-LDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYS 414
            R  +L   AA  L  L P NA   YV L+N++AA  KW+DV   RL+M+   V K  G S
Sbjct: 845  RNTELGRRAAKMLIELEPLNAVN-YVLLSNMHAAGGKWEDVEEARLAMRNAEVKKEAGCS 903

Query: 415  WIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLL 474
            W+ +   VH F +GD+ HPE   I++KLKE+  +M+  GYVP+ ++AL+ +  E KE+LL
Sbjct: 904  WVTMKDGVHVFVAGDQTHPEKEKIYDKLKEIMNKMRDLGYVPETKYALYDLELENKEELL 963

Query: 475  LFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHF 534
             +HSEKLAIAF L +     PIR+ KNLRVCGDCH A KYIS I  R+II+RD+ RFHHF
Sbjct: 964  SYHSEKLAIAFVLTRQS-ELPIRIIKNLRVCGDCHTAFKYISNIVNRQIILRDSNRFHHF 1022

Query: 535  KDGTCSCGDYW 545
              G CSC DYW
Sbjct: 1023 DGGICSCQDYW 1033



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 94/338 (27%), Positives = 160/338 (47%), Gaps = 55/338 (16%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVV 133
           NT+++ FV+  N+  A+ LF  MP+KN VSWS ++SGY + G  D+A  LF         
Sbjct: 78  NTLVNIFVRAGNLVSAQKLFDEMPQKNLVSWSCLVSGYAQNGMPDEACMLF--------- 128

Query: 134 AWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHL--SSLQLG 191
                                      R +I  G+ PN  ++ S L  C  L  + L+LG
Sbjct: 129 ---------------------------RGIISAGLLPNHYAIGSALRACQELGPNMLKLG 161

Query: 192 KQVHQLVFKSPLCKDTTALTPLISMYCKC-GDLEDACKLFLEIQRKDVVTWNAMISGYAQ 250
            ++H L+ KSP   D      L+SMY  C   ++DA ++F EI+ K   +WN++IS Y +
Sbjct: 162 MEIHGLISKSPYASDMVLSNVLMSMYSHCSASIDDARRVFEEIKMKTSASWNSIISVYCR 221

Query: 251 HGKGEKALRLFDKMKDEGM----KPDSITFVALL-LACNHAGLVDLGIQYFDSMVNDYGI 305
            G    A +LF  M+ E      +P+  TF +L+ +AC+   LVD G+   + M+     
Sbjct: 222 RGDAISAFKLFSSMQREATELNCRPNEYTFCSLVTVACS---LVDCGLTLLEQMLARIEK 278

Query: 306 AA-KPDHY--TCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAE- 361
           ++   D Y  + +V    R G +  A  + ++M  +    + G ++   R H+  + A+ 
Sbjct: 279 SSFVKDLYVGSALVSGFARYGLIDSAKMIFEQMDDRNAVTMNGLMVGLARQHQGEEAAKI 338

Query: 362 FAAM-NLFNLNPANAA---GCYVQLANIYAAMKKWDDV 395
           F  M +L  +N ++ A     + + +N+    +K  +V
Sbjct: 339 FKEMKDLVEINASSYAVLLSAFTEFSNLKEGKRKGQEV 376



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 76/314 (24%), Positives = 150/314 (47%), Gaps = 51/314 (16%)

Query: 29  LFDKIP-QPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMA 87
           L  K P   D+V  N+++S     S  +  A   F+ + +K +ASWN++IS + ++ +  
Sbjct: 167 LISKSPYASDMVLSNVLMSMYSHCSASIDDARRVFEEIKMKTSASWNSIISVYCRRGDAI 226

Query: 88  KARDLFLAMPEK--------NSVSWSAMISGYIECGQLDKAVELF--------KVAPVKS 131
            A  LF +M  +        N  ++ ++++  + C  +D  + L         K + VK 
Sbjct: 227 SAFKLFSSMQREATELNCRPNEYTFCSLVT--VACSLVDCGLTLLEQMLARIEKSSFVKD 284

Query: 132 VVAWTAMISGYMKFGYVENSWA-------EDGLKLLRMMIGLG----------------- 167
           +   +A++SG+ ++G ++++          + + +  +M+GL                  
Sbjct: 285 LYVGSALVSGFARYGLIDSAKMIFEQMDDRNAVTMNGLMVGLARQHQGEEAAKIFKEMKD 344

Query: 168 -IRPNASSLSSVLLGCSHLSSLQLGK----QVHQLVFKSPLCKDTTAL--TPLISMYCKC 220
            +  NASS + +L   +  S+L+ GK    +VH  + ++ L  D   L    L+++Y KC
Sbjct: 345 LVEINASSYAVLLSAFTEFSNLKEGKRKGQEVHAYLIRNALV-DVWILIGNALVNLYAKC 403

Query: 221 GDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 280
             +++A  +F  +  KD V+WN++ISG   + + E+A+  F  M+  GM P   + ++ L
Sbjct: 404 NAIDNARSIFQLMPSKDTVSWNSIISGLDHNERFEEAVACFHTMRRNGMVPSKFSVISTL 463

Query: 281 LACNHAGLVDLGIQ 294
            +C   G + LG Q
Sbjct: 464 SSCASLGWIMLGQQ 477



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 86/341 (25%), Positives = 155/341 (45%), Gaps = 35/341 (10%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  K TV+WNS+++G         D  E F++     V  ++ M       +  V + F 
Sbjct: 416 MPSKDTVSWNSIISGL--------DHNERFEEA----VACFHTM-----RRNGMVPSKFS 458

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
               L    +  W  M+   +  + +    DL +++        +A+++ Y E   +++ 
Sbjct: 459 VISTLSSCASLGW-IMLGQQIHGEGIKCGLDLDVSVS-------NALLTLYAETDCMEEY 510

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGYVENSWAE--DGLKLLRMMIGLGIRPNASSLSSV 178
            ++F + P    V+W + I      G +  S A     +K    M+  G +PN  +  ++
Sbjct: 511 QKVFFLMPEYDQVSWNSFI------GALATSEASVLQAIKYFLEMMQAGWKPNRVTFINI 564

Query: 179 LLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI-QRKD 237
           L   S LS L+LG+Q+H L+ K  +  D      L++ Y KC  +ED   +F  + +R+D
Sbjct: 565 LSAVSSLSLLELGRQIHALILKHSVADDNAIENTLLAFYGKCEQMEDCEIIFSRMSERRD 624

Query: 238 VVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFD 297
            V+WNAMISGY  +G   KA+ L   M  +G + D  T   +L AC     ++ G++   
Sbjct: 625 EVSWNAMISGYIHNGILHKAMGLVWLMMQKGQRLDDFTLATVLSACASVATLERGMEVHA 684

Query: 298 SMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 338
             +    + A+    + +VD+  + GK+  A    + MP +
Sbjct: 685 CAIRA-CLEAEVVVGSALVDMYAKCGKIDYASRFFELMPVR 724



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 68/282 (24%), Positives = 137/282 (48%), Gaps = 18/282 (6%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAA--FDFFQRLPI 67
           +++++GFA+  G +  A+ +F+++   + V+ N ++  +        AA  F   + L  
Sbjct: 289 SALVSGFARY-GLIDSAKMIFEQMDDRNAVTMNGLMVGLARQHQGEEAAKIFKEMKDLVE 347

Query: 68  KDTASWNTMISGFVQKKNMA----KARDLFLAMPEKNSVS-W----SAMISGYIECGQLD 118
            + +S+  ++S F +  N+     K +++   +     V  W    +A+++ Y +C  +D
Sbjct: 348 INASSYAVLLSAFTEFSNLKEGKRKGQEVHAYLIRNALVDVWILIGNALVNLYAKCNAID 407

Query: 119 KAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSV 178
            A  +F++ P K  V+W ++ISG        N   E+ +     M   G+ P+  S+ S 
Sbjct: 408 NARSIFQLMPSKDTVSWNSIISGL-----DHNERFEEAVACFHTMRRNGMVPSKFSVIST 462

Query: 179 LLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDV 238
           L  C+ L  + LG+Q+H    K  L  D +    L+++Y +   +E+  K+F  +   D 
Sbjct: 463 LSSCASLGWIMLGQQIHGEGIKCGLDLDVSVSNALLTLYAETDCMEEYQKVFFLMPEYDQ 522

Query: 239 VTWNAMISGYA-QHGKGEKALRLFDKMKDEGMKPDSITFVAL 279
           V+WN+ I   A       +A++ F +M   G KP+ +TF+ +
Sbjct: 523 VSWNSFIGALATSEASVLQAIKYFLEMMQAGWKPNRVTFINI 564



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 65/110 (59%), Gaps = 2/110 (1%)

Query: 187 SLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMIS 246
           +++   Q+H  ++K+ L  D      L++++ + G+L  A KLF E+ +K++V+W+ ++S
Sbjct: 54  TVEDAHQLHLQIYKTGLTSDVFWCNTLVNIFVRAGNLVSAQKLFDEMPQKNLVSWSCLVS 113

Query: 247 GYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG--LVDLGIQ 294
           GYAQ+G  ++A  LF  +   G+ P+     + L AC   G  ++ LG++
Sbjct: 114 GYAQNGMPDEACMLFRGIISAGLLPNHYAIGSALRACQELGPNMLKLGME 163


>gi|297804786|ref|XP_002870277.1| hypothetical protein ARALYDRAFT_493409 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297316113|gb|EFH46536.1| hypothetical protein ARALYDRAFT_493409 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 684

 Score =  367 bits (942), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 201/530 (37%), Positives = 310/530 (58%), Gaps = 15/530 (2%)

Query: 25  DAQELFDKIPQPDVVSYNIMLSCILLNS--DDVVAAFDFFQRL-----PIKDTASWNTMI 77
           DA++LFD+IP+ ++ ++N  +S  + +    + + AF  F+R+      I      N   
Sbjct: 161 DARKLFDEIPERNLETWNAYISNSVTDGRPKEAIEAFIEFRRIGGQPNSITFCGFLNACS 220

Query: 78  SGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTA 137
            G +    M     +F +  + +   ++ +I  Y +C Q+  +  +F    +K+ V+W +
Sbjct: 221 DGLLLDLGMQMHGLVFRSGFDTDVSVYNGLIDFYGKCKQIRSSEIIFAEMGMKNAVSWCS 280

Query: 138 MISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQL 197
           +++ Y     V+N   E    L        +  +   +SSVL  C+ ++ L+LG+ +H  
Sbjct: 281 LVAAY-----VQNHEDEKASVLYLRSRKEIVETSDFMISSVLSACAGMAGLELGRSIHAH 335

Query: 198 VFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKA 257
             K+ + ++    + L+ MY KCG +ED+ + F E+  K++VT N++I GYA  G+ + A
Sbjct: 336 AVKACVERNIFVGSALVDMYGKCGCIEDSEQAFDEMPEKNLVTLNSLIGGYAHQGQVDMA 395

Query: 258 LRLFDKMKDEGM--KPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCM 315
           L LF+ M   G    P+ +TFV+LL AC+ AG V+ G++ FDSM + YGI    +HY+C+
Sbjct: 396 LALFEDMAPRGCGPAPNYMTFVSLLSACSRAGAVENGMKIFDSMKSTYGIEPGAEHYSCI 455

Query: 316 VDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANA 375
           VD+LGRAG + +A + IKKMP KP  +++G L +ACR+H +  L   AA NLF L+P ++
Sbjct: 456 VDMLGRAGMVEQAFEFIKKMPIKPTISVWGALQNACRMHGKPHLGILAAENLFKLDPKDS 515

Query: 376 AGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPEL 435
            G +V L+N +AA  +W +   +R  MK   + K  GYSWI V   VH F++ DR H   
Sbjct: 516 -GNHVLLSNTFAAAGRWAEANTVREEMKGVGIKKGAGYSWITVKNQVHAFQAKDRSHKMN 574

Query: 436 VSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTP 495
             I   L +L  +M+ AGY PDL+ +L+ + EE K   +  HSEKLA+AFGL+ +PL  P
Sbjct: 575 KEIQTMLTKLRNKMEAAGYKPDLKLSLYDLEEEEKAAEVSHHSEKLALAFGLVALPLSVP 634

Query: 496 IRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           IR+ KNLR+CGDCH   K++S   KREIIVRD  RFH FKDG CSC DYW
Sbjct: 635 IRITKNLRICGDCHSFFKFVSGSVKREIIVRDNNRFHRFKDGICSCKDYW 684



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 66/232 (28%), Positives = 110/232 (47%), Gaps = 6/232 (2%)

Query: 107 MISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGL 166
           +I+ Y +    + A  + ++ P ++VV+WT+++SG  + G+   +  E        M   
Sbjct: 48  LINMYSKLDHPESARLVLRLTPARNVVSWTSLVSGLAQNGHFSTALFE-----FFEMRRE 102

Query: 167 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 226
           G+ PN  +   V    + L     GKQ+H L  K     D         MYCK    +DA
Sbjct: 103 GVAPNDFTFPCVFKAVASLRLPVTGKQIHALAVKCGRILDVFVGCSAFDMYCKTRLRDDA 162

Query: 227 CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHA 286
            KLF EI  +++ TWNA IS     G+ ++A+  F + +  G +P+SITF   L AC+  
Sbjct: 163 RKLFDEIPERNLETWNAYISNSVTDGRPKEAIEAFIEFRRIGGQPNSITFCGFLNACSDG 222

Query: 287 GLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 338
            L+DLG+Q    +V   G       Y  ++D  G+  ++  +  +  +M  K
Sbjct: 223 LLLDLGMQ-MHGLVFRSGFDTDVSVYNGLIDFYGKCKQIRSSEIIFAEMGMK 273



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 92/423 (21%), Positives = 167/423 (39%), Gaps = 87/423 (20%)

Query: 34  PQPDVVSYNIMLSCILLNSDDVVAAFDFFQ-----------------------RLPIK-- 68
           P  +VVS+  ++S +  N     A F+FF+                       RLP+   
Sbjct: 69  PARNVVSWTSLVSGLAQNGHFSTALFEFFEMRREGVAPNDFTFPCVFKAVASLRLPVTGK 128

Query: 69  -------------DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECG 115
                        D     +    + + +    AR LF  +PE+N  +W+A IS  +  G
Sbjct: 129 QIHALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIPERNLETWNAYISNSVTDG 188

Query: 116 QLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSL 175
           +  +A+E F                                ++  R    +G +PN+ + 
Sbjct: 189 RPKEAIEAF--------------------------------IEFRR----IGGQPNSITF 212

Query: 176 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR 235
              L  CS    L LG Q+H LVF+S    D +    LI  Y KC  +  +  +F E+  
Sbjct: 213 CGFLNACSDGLLLDLGMQMHGLVFRSGFDTDVSVYNGLIDFYGKCKQIRSSEIIFAEMGM 272

Query: 236 KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQY 295
           K+ V+W ++++ Y Q+ + EKA  L+ + + E ++       ++L AC     ++LG   
Sbjct: 273 KNAVSWCSLVAAYVQNHEDEKASVLYLRSRKEIVETSDFMISSVLSACAGMAGLELG--- 329

Query: 296 FDSMVNDYGIAAKPDHY----TCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSAC 351
               ++ + + A  +      + +VD+ G+ G + ++     +MP K       +L+   
Sbjct: 330 --RSIHAHAVKACVERNIFVGSALVDMYGKCGCIEDSEQAFDEMPEK-NLVTLNSLIGGY 386

Query: 352 RVHKRLD--LAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVK 409
               ++D  LA F  M      PA     +V L +  +     ++  +I  SMK    ++
Sbjct: 387 AHQGQVDMALALFEDMAPRGCGPAPNYMTFVSLLSACSRAGAVENGMKIFDSMKSTYGIE 446

Query: 410 MPG 412
            PG
Sbjct: 447 -PG 448



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 57/113 (50%), Gaps = 1/113 (0%)

Query: 171 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTP-LISMYCKCGDLEDACKL 229
            A +L  +L      SS++LG+ VH  + K+        L   LI+MY K    E A  +
Sbjct: 5   TADALGLLLKNAISTSSMRLGRVVHARIVKTLDSPPPPFLANYLINMYSKLDHPESARLV 64

Query: 230 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA 282
                 ++VV+W +++SG AQ+G    AL  F +M+ EG+ P+  TF  +  A
Sbjct: 65  LRLTPARNVVSWTSLVSGLAQNGHFSTALFEFFEMRREGVAPNDFTFPCVFKA 117


>gi|224079221|ref|XP_002305798.1| predicted protein [Populus trichocarpa]
 gi|222848762|gb|EEE86309.1| predicted protein [Populus trichocarpa]
          Length = 584

 Score =  367 bits (941), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 204/541 (37%), Positives = 311/541 (57%), Gaps = 14/541 (2%)

Query: 13  LAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTAS 72
           L   A   G +   +++F  +P PD   +  ++       +  V +  F+ R+ + + A 
Sbjct: 50  LLNLACAAGSISYTRQIFLIVPNPDSFLFTSLIRSTSKFHNFSVYSLYFYTRMVLSNVAP 109

Query: 73  WNTMISGFVQK-KNMAKARD-------LFLAMPEKNSVSWSAMISGYIECGQLDKAVELF 124
            N   +  ++   ++   R        + +     +    +A++S Y +CG L  A ++F
Sbjct: 110 SNYTFTSVIKSCADLVALRHGRIIHGHVLVNGFGSDVYVQTALMSFYGKCGVLCNARKVF 169

Query: 125 KVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSH 184
                +SVV W +MISGY      +N +A++ ++L   M  +G+ PN+++  SVL  C+H
Sbjct: 170 DKMRDRSVVTWNSMISGYE-----QNGFAKEAIRLFDRMKEIGVEPNSATFVSVLSACAH 224

Query: 185 LSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAM 244
           L +  LG  VH+    + L  +    T LI+MY +CG++  A ++F  ++ ++VV W AM
Sbjct: 225 LGAFILGCWVHEYAVGNGLDLNVVLGTSLINMYTRCGNVSKAREVFDSMKERNVVAWTAM 284

Query: 245 ISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYG 304
           ISGY  +G G +A+ LF +M+  G+ P+SITFVA+L AC HAGLV+ G + F+SM  +Y 
Sbjct: 285 ISGYGTNGYGSQAVELFHEMRRNGLLPNSITFVAVLSACAHAGLVNEGRRVFESMREEYR 344

Query: 305 IAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAA 364
           +  + +H+ C+VD+LGRAG L EA + IK++  +P PAI+  +L AC++HK   L    A
Sbjct: 345 LVPEVEHHVCLVDMLGRAGLLDEAYNFIKEIHEEPAPAIWTAMLGACKMHKNFGLGAQVA 404

Query: 365 MNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHE 424
            +     P N A  YV L+NIYA   + D V  +R +M    + K  GYS I++    + 
Sbjct: 405 EHRLASEPGNPAH-YVILSNIYALAGRMDQVEMVRDNMIRKCLKKQVGYSTIDLDRKTYL 463

Query: 425 FRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIA 484
           F  GD+ H E   I+  L +L ++ + AGYV   +  +H + EE +E  L +HSEKLAIA
Sbjct: 464 FSMGDKSHTETNEIYHYLDQLMRKCREAGYVTVSDSVMHELEEEEREYALGYHSEKLAIA 523

Query: 485 FGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDY 544
           FGL+K   GT IR+ KNLR+C DCH A KYIS I  REIIVRD  RFHHFK+G+CSC DY
Sbjct: 524 FGLLKTSRGTVIRIVKNLRMCEDCHSAIKYISVISNREIIVRDKLRFHHFKNGSCSCLDY 583

Query: 545 W 545
           W
Sbjct: 584 W 584



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/257 (26%), Positives = 122/257 (47%), Gaps = 28/257 (10%)

Query: 11  SVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLN--SDDVVAAFDFFQRLPIK 68
           + L  F  + G L +A+++FDK+    VV++N M+S    N  + + +  FD  + + ++
Sbjct: 150 TALMSFYGKCGVLCNARKVFDKMRDRSVVTWNSMISGYEQNGFAKEAIRLFDRMKEIGVE 209

Query: 69  -DTASWNTMISG-----------FVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQ 116
            ++A++ +++S            +V +  +    DL       N V  +++I+ Y  CG 
Sbjct: 210 PNSATFVSVLSACAHLGAFILGCWVHEYAVGNGLDL-------NVVLGTSLINMYTRCGN 262

Query: 117 LDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLS 176
           + KA E+F     ++VVAWTAMISGY   GY         ++L   M   G+ PN+ +  
Sbjct: 263 VSKAREVFDSMKERNVVAWTAMISGYGTNGY-----GSQAVELFHEMRRNGLLPNSITFV 317

Query: 177 SVLLGCSHLSSLQLGKQVHQLVFKS-PLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR 235
           +VL  C+H   +  G++V + + +   L  +      L+ M  + G L++A     EI  
Sbjct: 318 AVLSACAHAGLVNEGRRVFESMREEYRLVPEVEHHVCLVDMLGRAGLLDEAYNFIKEIHE 377

Query: 236 KDV-VTWNAMISGYAQH 251
           +     W AM+     H
Sbjct: 378 EPAPAIWTAMLGACKMH 394



 Score = 48.5 bits (114), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 70/294 (23%), Positives = 114/294 (38%), Gaps = 68/294 (23%)

Query: 188 LQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISG 247
           L+L  QVH  V  S        LT L+++ C  G +    ++FL +   D   + ++I  
Sbjct: 25  LKLLHQVHAHVIVSGYGCSRFLLTKLLNLACAAGSISYTRQIFLIVPNPDSFLFTSLIRS 84

Query: 248 YAQ-HGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDL---GIQYFDSMVNDY 303
            ++ H     +L  + +M    + P + TF +++ +C  A LV L    I +   +VN +
Sbjct: 85  TSKFHNFSVYSLYFYTRMVLSNVAPSNYTFTSVIKSC--ADLVALRHGRIIHGHVLVNGF 142

Query: 304 GIAAKPDHY--TCMVDLLGRAGKLVEA--------------------------------- 328
           G     D Y  T ++   G+ G L  A                                 
Sbjct: 143 G----SDVYVQTALMSFYGKCGVLCNARKVFDKMRDRSVVTWNSMISGYEQNGFAKEAIR 198

Query: 329 -VDLIKKMPFKPQPAIFGTLLSACRVHKRLDLA----EFAAMNLFNLN---PANAAGCYV 380
             D +K++  +P  A F ++LSAC       L     E+A  N  +LN     +    Y 
Sbjct: 199 LFDRMKEIGVEPNSATFVSVLSACAHLGAFILGCWVHEYAVGNGLDLNVVLGTSLINMYT 258

Query: 381 QLANIYAAMKKWDDVARIRLSMKENNVVK----MPGYSWIEVGT----VVHEFR 426
           +  N+  A + +D       SMKE NVV     + GY     G+    + HE R
Sbjct: 259 RCGNVSKAREVFD-------SMKERNVVAWTAMISGYGTNGYGSQAVELFHEMR 305


>gi|215713517|dbj|BAG94654.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222635568|gb|EEE65700.1| hypothetical protein OsJ_21333 [Oryza sativa Japonica Group]
          Length = 382

 Score =  367 bits (941), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 184/379 (48%), Positives = 242/379 (63%), Gaps = 3/379 (0%)

Query: 167 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 226
           G   N  +L+SVL  C+ L +L++G+QVH  V K    KD      L+ MYCKCG L+DA
Sbjct: 7   GFLSNQGTLTSVLRACTGLVTLEVGRQVHAHVLKYD--KDLILHNALLDMYCKCGSLQDA 64

Query: 227 CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHA 286
             LF  + ++DV++W+ MISG AQ+G+  +AL++FD MK EG +P+ IT V +L AC+HA
Sbjct: 65  DALFGRMPQRDVISWSTMISGLAQNGRSIEALKVFDMMKSEGPRPNHITMVGVLFACSHA 124

Query: 287 GLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGT 346
           GLV+ G  YF SM   +GI  + +H  CMVDLLGRAGKL +AV  I +M F+P   I+ T
Sbjct: 125 GLVEDGWYYFSSMEKLFGIQPEREHCNCMVDLLGRAGKLDDAVKFIHEMNFQPDSVIWRT 184

Query: 347 LLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENN 406
           LL ACR+HK  DLA +AA  +  L P +  G  + L+N YA +++W D  +    M++  
Sbjct: 185 LLGACRMHKNADLAAYAAKEILRLEP-DDQGARILLSNTYADLRQWADAEKSWKMMRDRG 243

Query: 407 VVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVG 466
           V K PG SWIE+G  VH F +GD  HP   SI ++L  L  R+   GY P  EF L  + 
Sbjct: 244 VKKDPGRSWIELGKQVHVFIAGDLSHPCSESIIQELSRLFSRVTNLGYTPQTEFVLQDLA 303

Query: 467 EEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVR 526
            E KE LL +HSEKLAIAFG +    G PIR+ KNLR+CGDCH   K +S  E + II+R
Sbjct: 304 TEQKEDLLKYHSEKLAIAFGTMNAMEGKPIRIMKNLRICGDCHAFAKLVSKSEGKVIIIR 363

Query: 527 DTTRFHHFKDGTCSCGDYW 545
           D  RFHHF+DG CSC DYW
Sbjct: 364 DPVRFHHFQDGVCSCNDYW 382



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 76/165 (46%), Gaps = 13/165 (7%)

Query: 98  EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGL 157
           +K+ +  +A++  Y +CG L  A  LF   P + V++W+ MIS     G  +N  + + L
Sbjct: 42  DKDLILHNALLDMYCKCGSLQDADALFGRMPQRDVISWSTMIS-----GLAQNGRSIEAL 96

Query: 158 KLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLG----KQVHQLVFKSPLCKDTTALTPL 213
           K+  MM   G RPN  ++  VL  CSH   ++ G      + +L    P  +    +  L
Sbjct: 97  KVFDMMKSEGPRPNHITMVGVLFACSHAGLVEDGWYYFSSMEKLFGIQPEREHCNCMVDL 156

Query: 214 ISMYCKCGDLEDACKLFLEIQ-RKDVVTWNAMISGYAQHGKGEKA 257
           +    + G L+DA K   E+  + D V W  ++     H   + A
Sbjct: 157 LG---RAGKLDDAVKFIHEMNFQPDSVIWRTLLGACRMHKNADLA 198


>gi|357440579|ref|XP_003590567.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479615|gb|AES60818.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1212

 Score =  367 bits (941), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 203/552 (36%), Positives = 309/552 (55%), Gaps = 45/552 (8%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIP------QPDVVSYNIMLSCILLNSDD 54
           M  K  ++W +++AG+A+    L DA  L  K+        P ++  +I+L+C  L S+ 
Sbjct: 413 MPEKDLISWTTIIAGYAQNECHL-DALNLLRKVQLEKMDVDPMMIG-SILLACSGLKSEK 470

Query: 55  VVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIEC 114
           ++                    I G+V K  +A   D+ +          +A+++ Y E 
Sbjct: 471 LIKE------------------IHGYVLKGGLA---DILIQ---------NAIVNVYGEL 500

Query: 115 GQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASS 174
             +D A  +F+    K +V+WT+MI+       V N  A + L+L   +I   I P+  +
Sbjct: 501 ALVDYARHVFESINSKDIVSWTSMITCC-----VHNGLAIEALELFNSLIETNIEPDLIT 555

Query: 175 LSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ 234
           L SVL   + LSSL+ GK++H  + +     +      L+ MY +CG +E+A  +F  ++
Sbjct: 556 LVSVLYAAAALSSLKKGKEIHGFLIRKGFFLEGLIANSLVDMYARCGTMENARNIFNYVK 615

Query: 235 RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ 294
           ++D++ W +MI+    HG G+ A+ LF KM DE + PD ITF+ALL AC+H+GLV  G Q
Sbjct: 616 QRDLILWTSMINANGMHGCGKDAIDLFSKMTDENVLPDHITFLALLYACSHSGLVVEGKQ 675

Query: 295 YFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVH 354
           +F+ M N+Y +   P+HY C+VDLL R+  L EA   ++ MP +P   ++  LL ACR+H
Sbjct: 676 HFEIMKNEYKLEPWPEHYACLVDLLARSNSLEEAYHFVRNMPIEPSAEVWCALLGACRIH 735

Query: 355 KRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYS 414
              DL E AA  L  LN  N +G YV ++N +AA  +W+DV  +R  MK N + K PG S
Sbjct: 736 SNNDLGEVAAKKLLQLNTEN-SGNYVLVSNTFAADGRWNDVEEVRSIMKGNKLKKKPGCS 794

Query: 415 WIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMK-LAGYVPDLEFALHAVGEEVKEQL 473
           WIEV   +H F + D+ HP+  +I+ KL +  K +K   GY    +   H V EE K Q+
Sbjct: 795 WIEVENKIHTFMARDKSHPQCNNIYLKLAQFTKLLKEKGGYRAQTKLVFHDVCEEEKTQM 854

Query: 474 LLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHH 533
           L  HSE+LA+ +GL+    GT +R+ KNLR+C DCH   K  S I +R ++VRD +RFHH
Sbjct: 855 LYGHSERLALGYGLLVTSKGTCLRITKNLRICDDCHAFFKIASEISQRTLVVRDASRFHH 914

Query: 534 FKDGTCSCGDYW 545
           F+ G CSCGD+W
Sbjct: 915 FERGLCSCGDFW 926



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 84/341 (24%), Positives = 156/341 (45%), Gaps = 46/341 (13%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIML-SCILLNSDDVVAAFDFFQRLPIKDTASWNTMISG 79
           G   DA ++FDK+ +  + ++N M+ +C+  ++   V A + ++ + +   +        
Sbjct: 96  GSFYDAVKVFDKMSERTIFTWNAMIGACV--SAGRYVEAIELYKEMRVLGVSLDAFTFPC 153

Query: 80  FVQKKNMAKARDLFLAMPEKNSVS-----------WSAMISGYIECGQLDKAVELFKVAP 128
            ++     K R L     E + V+            +A+I+ Y +CG L  A  LF    
Sbjct: 154 VLKACGAFKERRLGC---EIHGVAVKCGYGGFVFVCNALIAMYAKCGDLGGARVLFDSGL 210

Query: 129 VK--SVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLS 186
           ++    V+W ++IS ++  G      + + L L R M  +G+  N  +  S L  C   +
Sbjct: 211 MEKDDPVSWNSIISAHVGEGE-----SLEALSLFRRMQEVGVESNTYTFVSALQACEGPT 265

Query: 187 SLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMIS 246
            +++G+ +H ++ KS    D      LI+MY  CG +EDA ++F  +  KD V+WN ++S
Sbjct: 266 FIKIGRGIHAVILKSNHFTDVYVSNALIAMYANCGQMEDAERVFKSMLFKDCVSWNTLLS 325

Query: 247 GYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNH-----AGL----------VDL 291
           G  Q+     A+  F  M+D G KPD ++ + ++ A        AG+          +D 
Sbjct: 326 GMVQNDMYSDAINHFQDMQDSGQKPDQVSVLNMIAASGRSANLLAGMEVHAYAIKHGIDS 385

Query: 292 GIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLI 332
            +   +S+++ YG         C V  +G A + +   DLI
Sbjct: 386 NMHIGNSLIDMYG-------KCCCVKYMGSAFEYMPEKDLI 419



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 71/249 (28%), Positives = 121/249 (48%), Gaps = 23/249 (9%)

Query: 111 YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFG-YVENSWAEDGLKLLRMMIGLGIR 169
           Y +CG    AV++F     +++  W AMI   +  G YVE       ++L + M  LG+ 
Sbjct: 92  YGKCGSFYDAVKVFDKMSERTIFTWNAMIGACVSAGRYVE------AIELYKEMRVLGVS 145

Query: 170 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 229
            +A +   VL  C      +LG ++H +  K            LI+MY KCGDL  A  L
Sbjct: 146 LDAFTFPCVLKACGAFKERRLGCEIHGVAVKCGYGGFVFVCNALIAMYAKCGDLGGARVL 205

Query: 230 FLE--IQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG 287
           F    +++ D V+WN++IS +   G+  +AL LF +M++ G++ ++ TFV+ L AC    
Sbjct: 206 FDSGLMEKDDPVSWNSIISAHVGEGESLEALSLFRRMQEVGVESNTYTFVSALQACEGPT 265

Query: 288 LVDLGIQYFDSMVNDYGIAAKPDHYT------CMVDLLGRAGKLVEAVDLIKKMPFKPQP 341
            + +G          + +  K +H+T       ++ +    G++ +A  + K M FK   
Sbjct: 266 FIKIG-------RGIHAVILKSNHFTDVYVSNALIAMYANCGQMEDAERVFKSMLFKDCV 318

Query: 342 AIFGTLLSA 350
           + + TLLS 
Sbjct: 319 S-WNTLLSG 326



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 100/385 (25%), Positives = 176/385 (45%), Gaps = 53/385 (13%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNS--DDVVAAFDFFQRLPI 67
           N+++A +A   G+++DA+ +F  +   D VS+N +LS ++ N    D +  F   Q    
Sbjct: 290 NALIAMYANC-GQMEDAERVFKSMLFKDCVSWNTLLSGMVQNDMYSDAINHFQDMQDSGQ 348

Query: 68  K-DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVS-----WSAMISGYIECGQLDKAV 121
           K D  S   MI+   +  N+    ++  A   K+ +       +++I  Y +C  +    
Sbjct: 349 KPDQVSVLNMIAASGRSANLLAGMEVH-AYAIKHGIDSNMHIGNSLIDMYGKCCCVKYMG 407

Query: 122 ELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLG 181
             F+  P K +++WT +I+     GY +N    D L LLR +    +  +   + S+LL 
Sbjct: 408 SAFEYMPEKDLISWTTIIA-----GYAQNECHLDALNLLRKVQLEKMDVDPMMIGSILLA 462

Query: 182 CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTW 241
           CS L S +L K++H  V K  L  D      ++++Y +   ++ A  +F  I  KD+V+W
Sbjct: 463 CSGLKSEKLIKEIHGYVLKGGL-ADILIQNAIVNVYGELALVDYARHVFESINSKDIVSW 521

Query: 242 NAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN-----------HAGLVD 290
            +MI+    +G   +AL LF+ + +  ++PD IT V++L A             H  L+ 
Sbjct: 522 TSMITCCVHNGLAIEALELFNSLIETNIEPDLITLVSVLYAAAALSSLKKGKEIHGFLIR 581

Query: 291 LGIQYF------DSMVNDYGIAAKPDH---------------YTCMVDLLGRAGKLVEAV 329
            G  +F      +S+V+ Y      ++               +T M++  G  G   +A+
Sbjct: 582 KG--FFLEGLIANSLVDMYARCGTMENARNIFNYVKQRDLILWTSMINANGMHGCGKDAI 639

Query: 330 DLIKKMPFK---PQPAIFGTLLSAC 351
           DL  KM  +   P    F  LL AC
Sbjct: 640 DLFSKMTDENVLPDHITFLALLYAC 664



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 90/367 (24%), Positives = 164/367 (44%), Gaps = 50/367 (13%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDK--IPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPI 67
           N+++A +AK  G L  A+ LFD   + + D VS+N ++S   +   + + A   F+R+  
Sbjct: 187 NALIAMYAKC-GDLGGARVLFDSGLMEKDDPVSWNSIISA-HVGEGESLEALSLFRRMQE 244

Query: 68  ----KDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVS----WSAMISGYIECGQLDK 119
                +T ++ + +        +   R +   + + N  +     +A+I+ Y  CGQ++ 
Sbjct: 245 VGVESNTYTFVSALQACEGPTFIKIGRGIHAVILKSNHFTDVYVSNALIAMYANCGQMED 304

Query: 120 AVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVL 179
           A  +FK    K  V+W  ++SG      V+N    D +   + M   G +P+  S+ +++
Sbjct: 305 AERVFKSMLFKDCVSWNTLLSGM-----VQNDMYSDAINHFQDMQDSGQKPDQVSVLNMI 359

Query: 180 LGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVV 239
                 ++L  G +VH    K  +  +      LI MY KC  ++     F  +  KD++
Sbjct: 360 AASGRSANLLAGMEVHAYAIKHGIDSNMHIGNSLIDMYGKCCCVKYMGSAFEYMPEKDLI 419

Query: 240 TWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN--------------- 284
           +W  +I+GYAQ+     AL L  K++ E M  D +   ++LLAC+               
Sbjct: 420 SWTTIIAGYAQNECHLDALNLLRKVQLEKMDVDPMMIGSILLACSGLKSEKLIKEIHGYV 479

Query: 285 -HAGLVDLGIQYFDSMVNDYGIAAKPDH---------------YTCMVDLLGRAGKLVEA 328
              GL D+ IQ  +++VN YG  A  D+               +T M+      G  +EA
Sbjct: 480 LKGGLADILIQ--NAIVNVYGELALVDYARHVFESINSKDIVSWTSMITCCVHNGLAIEA 537

Query: 329 VDLIKKM 335
           ++L   +
Sbjct: 538 LELFNSL 544



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/115 (33%), Positives = 60/115 (52%), Gaps = 1/115 (0%)

Query: 170 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTAL-TPLISMYCKCGDLEDACK 228
           P   + S  L  C+   +L  G+Q+H    K+    D+  L T  + MY KCG   DA K
Sbjct: 44  PLQQAYSQALELCASHKALPQGQQLHAHFLKTQNYLDSVFLDTKFVHMYGKCGSFYDAVK 103

Query: 229 LFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC 283
           +F ++  + + TWNAMI      G+  +A+ L+ +M+  G+  D+ TF  +L AC
Sbjct: 104 VFDKMSERTIFTWNAMIGACVSAGRYVEAIELYKEMRVLGVSLDAFTFPCVLKAC 158


>gi|188509980|gb|ACD56662.1| putative pentatricopeptide [Gossypium arboreum]
          Length = 805

 Score =  367 bits (941), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 193/547 (35%), Positives = 309/547 (56%), Gaps = 35/547 (6%)

Query: 7   VNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLN--SDDVVAAFDFFQR 64
           +N+++ L     + G L  A  +F+K+ + +VVS+  M++    +  SD  +      ++
Sbjct: 286 INFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIKLLQQMEK 345

Query: 65  LPIK-DTASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMISGYIECGQLDK 119
             +K D  +  +++    +  ++   +D+   +     E N    +A++  Y +CG ++ 
Sbjct: 346 EGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYAKCGSMEA 405

Query: 120 AVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVL 179
           A  +F    VK +++W  MI                            ++P++ +++ VL
Sbjct: 406 ANSVFSTMVVKDIISWNTMIGE--------------------------LKPDSRTMACVL 439

Query: 180 LGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVV 239
             C+ LS+L+ GK++H  + ++    D      L+ +Y KCG L  A  LF  I  KD+V
Sbjct: 440 PACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLV 499

Query: 240 TWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSM 299
           +W  MI+GY  HG G +A+  F++M+D G++PD ++F+++L AC+H+GL++ G ++F  M
Sbjct: 500 SWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIM 559

Query: 300 VNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDL 359
            ND+ I  K +HY CMVDLL R G L +A + ++ +P  P   I+G LL  CR +  ++L
Sbjct: 560 KNDFNIEPKLEHYACMVDLLSRTGNLSKAYEFMETLPIAPDATIWGALLCGCRNYHDIEL 619

Query: 360 AEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVG 419
           AE  A  +F L P N  G YV LANIYA  +KW++V R+R  + +  + K PG SWIE+ 
Sbjct: 620 AEKVAERVFELEPEN-TGYYVLLANIYAEAEKWEEVKRLREKIGKQGLRKNPGCSWIEIK 678

Query: 420 TVVHEFRSGDR-VHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHS 478
             V+ F SG+   HP   +I   LK++ ++MK  G+ P  ++AL    E  KE  L  HS
Sbjct: 679 GKVNLFVSGNNSSHPHSKNIESLLKKMRRKMKEEGHFPKTKYALINADEMQKEMALCGHS 738

Query: 479 EKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGT 538
           EKLA+AFGL+ +P    IRV KNLRVCGDCH   K++S   +REI++RD+ RFHHFKDG 
Sbjct: 739 EKLAMAFGLLTLPPRKTIRVTKNLRVCGDCHEMAKFMSKETRREIVLRDSNRFHHFKDGY 798

Query: 539 CSCGDYW 545
           CSC  +W
Sbjct: 799 CSCRGFW 805



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 90/313 (28%), Positives = 155/313 (49%), Gaps = 47/313 (15%)

Query: 76  MISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKS---- 131
           ++S +    ++ + R +F  M +KN   W+ M+S Y + G   +++ LFK+   K     
Sbjct: 140 LVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGK 199

Query: 132 ----------------VVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSL 175
                           V++W +MISGY     V N   E GL + + M+ LGI  + +++
Sbjct: 200 RPESAFELFDKLCDRDVISWNSMISGY-----VSNGLTERGLGIYKQMMYLGIDVDLATI 254

Query: 176 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR 235
            SVL+GC++  +L LGK VH L  KS   +       L+ MY KCGDL+ A ++F ++  
Sbjct: 255 ISVLVGCANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGE 314

Query: 236 KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQY 295
           ++VV+W +MI+GY + G+ + A++L  +M+ EG+K D +   ++L AC  +G +D G   
Sbjct: 315 RNVVSWTSMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKD- 373

Query: 296 FDSMVNDYGIA--AKPDHYTC--MVDLLGRAGKLVEAVDLIKKM-------------PFK 338
               V+DY  A   + + + C  ++D+  + G +  A  +   M               K
Sbjct: 374 ----VHDYIKANNMESNLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMIGELK 429

Query: 339 PQPAIFGTLLSAC 351
           P       +L AC
Sbjct: 430 PDSRTMACVLPAC 442



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 99/384 (25%), Positives = 167/384 (43%), Gaps = 85/384 (22%)

Query: 13  LAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLS------------CIL-------LNSD 53
           L  F    G LK+ + +FD + + +V  +N M+S            C+        +   
Sbjct: 140 LVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGK 199

Query: 54  DVVAAFDFFQRLPIKDTASWNTMISGFVQ-----------KKNMAKARDLFLA------M 96
              +AF+ F +L  +D  SWN+MISG+V            K+ M    D+ LA      +
Sbjct: 200 RPESAFELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLV 259

Query: 97  PEKNSVSWS----------------------AMISGYIECGQLDKAVELFKVAPVKSVVA 134
              NS + S                       ++  Y +CG LD A+ +F+    ++VV+
Sbjct: 260 GCANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVS 319

Query: 135 WTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQV 194
           WT+MI+GY + G      ++  +KLL+ M   G++ +  +++S+L  C+   SL  GK V
Sbjct: 320 WTSMIAGYTRDGR-----SDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDV 374

Query: 195 HQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKG 254
           H  +  + +  +      L+ MY KCG +E A  +F  +  KD+++WN MI        G
Sbjct: 375 HDYIKANNMESNLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMI--------G 426

Query: 255 EKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTC 314
           E             +KPDS T   +L AC     ++ G +    ++ + G ++       
Sbjct: 427 E-------------LKPDSRTMACVLPACASLSALERGKEIHGYILRN-GYSSDRHVANA 472

Query: 315 MVDLLGRAGKLVEAVDLIKKMPFK 338
           +VDL  + G L  A  L   +P K
Sbjct: 473 LVDLYVKCGVLGLARLLFDMIPSK 496



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 81/346 (23%), Positives = 138/346 (39%), Gaps = 82/346 (23%)

Query: 1   MNVKTTVNWNSVLAGF---AKQRGKLKDAQELFDKIPQPDVVSYNIML-----SCILLNS 52
           M  +  V+W S++AG+    +  G +K  Q++  +  + DVV+   +L     S  L N 
Sbjct: 312 MGERNVVSWTSMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNG 371

Query: 53  DDV-----------------------------VAAFDFFQRLPIKDTASWNTMISGFVQK 83
            DV                              AA   F  + +KD  SWNTMI      
Sbjct: 372 KDVHDYIKANNMESNLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMIGEL--- 428

Query: 84  KNMAKARDLFLAMPEKNSVS-----------------------WSAMISGYIECGQLDKA 120
                +R +   +P   S+S                        +A++  Y++CG L  A
Sbjct: 429 --KPDSRTMACVLPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLA 486

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLL 180
             LF + P K +V+WT MI+GY   GY       + +     M   GI P+  S  S+L 
Sbjct: 487 RLLFDMIPSKDLVSWTVMIAGYGMHGY-----GNEAIATFNEMRDAGIEPDEVSFISILY 541

Query: 181 GCSHLSSLQLGKQVHQLVFK----SPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ-- 234
            CSH   L+ G +   ++       P  +    +  L+S   + G+L  A + F+E    
Sbjct: 542 ACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLS---RTGNLSKAYE-FMETLPI 597

Query: 235 RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 280
             D   W A++ G   +   E A ++ +++ +  ++P++  +  LL
Sbjct: 598 APDATIWGALLCGCRNYHDIELAEKVAERVFE--LEPENTGYYVLL 641



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 48/213 (22%), Positives = 90/213 (42%), Gaps = 52/213 (24%)

Query: 174 SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI 233
           +  SVL  C+ L S   GK+VH ++  + +  D      L+S Y  CGDL++  ++F  +
Sbjct: 101 TYGSVLQLCAGLKSFTDGKKVHSIIKSNSVGVDGALGLKLVSFYATCGDLKEGRRVFDTM 160

Query: 234 QRK---------------------------------------------------DVVTWN 242
           ++K                                                   DV++WN
Sbjct: 161 EKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESAFELFDKLCDRDVISWN 220

Query: 243 AMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVND 302
           +MISGY  +G  E+ L ++ +M   G+  D  T +++L+ C ++G + LG +   S+   
Sbjct: 221 SMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLG-KAVHSLAIK 279

Query: 303 YGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335
                + +    ++D+  + G L  A+ + +KM
Sbjct: 280 SSFERRINFSNTLLDMYSKCGDLDGALRVFEKM 312


>gi|15240583|ref|NP_196827.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75181132|sp|Q9LYV3.1|PP377_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial; Flags: Precursor
 gi|7529278|emb|CAB86630.1| putative protein [Arabidopsis thaliana]
 gi|332004486|gb|AED91869.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 822

 Score =  367 bits (941), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 202/532 (37%), Positives = 297/532 (55%), Gaps = 46/532 (8%)

Query: 54  DVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMIS 109
           D+  AF  F  +P  D   W+ MI+ F Q     +A DLF+ M E     N  + S++++
Sbjct: 297 DMSDAFKVFNEMPKNDVVPWSFMIARFCQNGFCNEAVDLFIRMREAFVVPNEFTLSSILN 356

Query: 110 G-----------------------------------YIECGQLDKAVELFKVAPVKSVVA 134
           G                                   Y +C ++D AV+LF     K+ V+
Sbjct: 357 GCAIGKCSGLGEQLHGLVVKVGFDLDIYVSNALIDVYAKCEKMDTAVKLFAELSSKNEVS 416

Query: 135 WTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQV 194
           W  +I GY   G    +++     + R  +   +     + SS L  C+ L+S+ LG QV
Sbjct: 417 WNTVIVGYENLGEGGKAFS-----MFREALRNQVSVTEVTFSSALGACASLASMDLGVQV 471

Query: 195 HQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKG 254
           H L  K+   K       LI MY KCGD++ A  +F E++  DV +WNA+ISGY+ HG G
Sbjct: 472 HGLAIKTNNAKKVAVSNSLIDMYAKCGDIKFAQSVFNEMETIDVASWNALISGYSTHGLG 531

Query: 255 EKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTC 314
            +ALR+ D MKD   KP+ +TF+ +L  C++AGL+D G + F+SM+ D+GI    +HYTC
Sbjct: 532 RQALRILDIMKDRDCKPNGLTFLGVLSGCSNAGLIDQGQECFESMIRDHGIEPCLEHYTC 591

Query: 315 MVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPAN 374
           MV LLGR+G+L +A+ LI+ +P++P   I+  +LSA       + A  +A  +  +NP +
Sbjct: 592 MVRLLGRSGQLDKAMKLIEGIPYEPSVMIWRAMLSASMNQNNEEFARRSAEEILKINPKD 651

Query: 375 AAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPE 434
            A  YV ++N+YA  K+W +VA IR SMKE  V K PG SWIE    VH F  G   HP+
Sbjct: 652 EA-TYVLVSNMYAGAKQWANVASIRKSMKEMGVKKEPGLSWIEHQGDVHYFSVGLSDHPD 710

Query: 435 LVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLG- 493
           +  I+  L+ L  +   AGYVPD    L  + +E K++ L  HSE+LA+A+GL+++P   
Sbjct: 711 MKLINGMLEWLNMKATRAGYVPDRNAVLLDMDDEEKDKRLWVHSERLALAYGLVRMPSSR 770

Query: 494 TPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
             I + KNLR+C DCH A K IS+I +R++++RD  RFHHF  G CSCGD+W
Sbjct: 771 NRILIMKNLRICSDCHSAMKVISSIVQRDLVIRDMNRFHHFHAGVCSCGDHW 822



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 70/243 (28%), Positives = 116/243 (47%), Gaps = 6/243 (2%)

Query: 98  EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGL 157
           + N+   +A+I+ Y  CG +D A  +F+    K +V W  ++S Y     VEN + ED L
Sbjct: 178 DSNAFVGAALINAYSVCGSVDSARTVFEGILCKDIVVWAGIVSCY-----VENGYFEDSL 232

Query: 158 KLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMY 217
           KLL  M   G  PN  +  + L     L +    K VH  + K+    D      L+ +Y
Sbjct: 233 KLLSCMRMAGFMPNNYTFDTALKASIGLGAFDFAKGVHGQILKTCYVLDPRVGVGLLQLY 292

Query: 218 CKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFV 277
            + GD+ DA K+F E+ + DVV W+ MI+ + Q+G   +A+ LF +M++  + P+  T  
Sbjct: 293 TQLGDMSDAFKVFNEMPKNDVVPWSFMIARFCQNGFCNEAVDLFIRMREAFVVPNEFTLS 352

Query: 278 ALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPF 337
           ++L  C       LG Q    +V   G          ++D+  +  K+  AV L  ++  
Sbjct: 353 SILNGCAIGKCSGLGEQ-LHGLVVKVGFDLDIYVSNALIDVYAKCEKMDTAVKLFAELSS 411

Query: 338 KPQ 340
           K +
Sbjct: 412 KNE 414



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/231 (29%), Positives = 110/231 (47%), Gaps = 18/231 (7%)

Query: 111 YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRP 170
           Y + G +  A ++F   P   VV W+ MI+ +      +N +  + + L   M    + P
Sbjct: 292 YTQLGDMSDAFKVFNEMPKNDVVPWSFMIARF-----CQNGFCNEAVDLFIRMREAFVVP 346

Query: 171 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 230
           N  +LSS+L GC+      LG+Q+H LV K     D      LI +Y KC  ++ A KLF
Sbjct: 347 NEFTLSSILNGCAIGKCSGLGEQLHGLVVKVGFDLDIYVSNALIDVYAKCEKMDTAVKLF 406

Query: 231 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVD 290
            E+  K+ V+WN +I GY   G+G KA  +F +     +    +TF + L AC     +D
Sbjct: 407 AELSSKNEVSWNTVIVGYENLGEGGKAFSMFREALRNQVSVTEVTFSSALGACASLASMD 466

Query: 291 LGIQYFDSMVNDYGIAAKPDH------YTCMVDLLGRAGKLVEAVDLIKKM 335
           LG+Q        +G+A K ++         ++D+  + G +  A  +  +M
Sbjct: 467 LGVQV-------HGLAIKTNNAKKVAVSNSLIDMYAKCGDIKFAQSVFNEM 510


>gi|219363695|ref|NP_001136685.1| uncharacterized protein LOC100216817 [Zea mays]
 gi|194696634|gb|ACF82401.1| unknown [Zea mays]
          Length = 615

 Score =  367 bits (941), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 190/448 (42%), Positives = 275/448 (61%), Gaps = 9/448 (2%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
           N+++  ++K +G L DA+++FD++   DVVS+N  ++  ++   +V AA   F  +P KD
Sbjct: 168 NALIDAYSKNQG-LSDAKKVFDEMTTRDVVSWNTAMAA-MVRQGEVDAARSMFDEMPEKD 225

Query: 70  TASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPV 129
           T SWNTM+ G+ +     KA +LF  MP +N VSWS ++S Y + G ++ A  +F   P 
Sbjct: 226 TVSWNTMLDGYAKAGEAEKAFELFQRMPGRNVVSWSTVVSAYCKKGDMEMARVIFDKMPA 285

Query: 130 KSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQ 189
           K++V WT M+S   + G VE    E G +L   M+   I  +  ++ S+L  C+   SL 
Sbjct: 286 KNLVTWTIMVSACAQKGLVE----EAG-RLFTEMMDAAIELDVIAVVSILAACAESGSLA 340

Query: 190 LGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF-LEIQRKDVVTWNAMISGY 248
           LGK++H+ V +  L + T     L+ M+CKCG +  A  +F  EI  KD+V+WN +I G+
Sbjct: 341 LGKRIHRHVRQRKLSRSTLVCNALMDMFCKCGCVNRADYIFDTEIVEKDLVSWNIIIGGF 400

Query: 249 AQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK 308
           A HG GEKAL LF +MK +G  PD++T + +L AC H GLV+ G ++F +M  DYGI  +
Sbjct: 401 AMHGPGEKALELFAQMKQQGFHPDAVTLINVLSACTHMGLVEEGRRFFANMETDYGIKPQ 460

Query: 309 PDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLF 368
            +HY CMVDLLGR G + EAVD+IK+MP++P   I+G+LLSACR+HK ++ AE A   L 
Sbjct: 461 IEHYGCMVDLLGRGGLIKEAVDMIKRMPWEPNEVIWGSLLSACRLHKNVEYAELAVNELS 520

Query: 369 NLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSG 428
           NL P ++AG Y  L+NIYA   KW D+A+ R+ MK     K  G SWIE+    HEF  G
Sbjct: 521 NLQP-SSAGNYAVLSNIYAEAGKWSDMAKARVQMKGTGSQKTAGSSWIELNEAFHEFTVG 579

Query: 429 DRVHPELVSIHEKLKELEKRMKLAGYVP 456
           DR HPE   I + +  L   +K  G VP
Sbjct: 580 DRKHPESDQISDMIDRLSSHVKFVGCVP 607



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 46/192 (23%), Positives = 86/192 (44%), Gaps = 10/192 (5%)

Query: 160 LRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCK 219
           L + + + +R   +   S L+     + L   +  H  V K    +DT     LI  Y K
Sbjct: 117 LAVFLDVPLRQRGTFTYSFLIKALAAAGLTPVRGAHAHVVKLGSAEDTFVGNALIDAYSK 176

Query: 220 CGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVAL 279
              L DA K+F E+  +DVV+WN  ++   + G+ + A  +FD+M ++    D++++  +
Sbjct: 177 NQGLSDAKKVFDEMTTRDVVSWNTAMAAMVRQGEVDAARSMFDEMPEK----DTVSWNTM 232

Query: 280 LLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKP 339
           L     AG  +   + F  M     ++     ++ +V    + G +  A  +  KMP K 
Sbjct: 233 LDGYAKAGEAEKAFELFQRMPGRNVVS-----WSTVVSAYCKKGDMEMARVIFDKMPAK- 286

Query: 340 QPAIFGTLLSAC 351
               +  ++SAC
Sbjct: 287 NLVTWTIMVSAC 298


>gi|359482660|ref|XP_002285225.2| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Vitis vinifera]
          Length = 872

 Score =  366 bits (940), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 201/528 (38%), Positives = 305/528 (57%), Gaps = 56/528 (10%)

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM------PEKNSVS------------ 103
           F ++  KD  SW  MISG+ +     KA + +  M      P++ +++            
Sbjct: 354 FSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLL 413

Query: 104 ---------------------WSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGY 142
                                 +++I  Y +C  +DKA+E+F   P K+V++WT++I G 
Sbjct: 414 DKGIMLHEFADRTGLTSYVIVANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTSIILG- 472

Query: 143 MKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSP 202
           ++  Y     + + L   + MI L ++PN+ +L SVL  C+ + +L  GK++H    ++ 
Sbjct: 473 LRLNYR----SFEALFFFQQMI-LSLKPNSVTLVSVLSACARIGALSCGKEIHAHALRTG 527

Query: 203 LCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFD 262
           L  D      L+ MY +CG +E A   F   + KDV +WN +++GYAQ GKG  A+ LF 
Sbjct: 528 LGFDGFLPNALLDMYVRCGRMEPAWNQFNSCE-KDVASWNILLTGYAQQGKGGLAVELFH 586

Query: 263 KMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRA 322
           KM +  + PD ITF +LL AC+ +G+V  G++YF+SM + + IA    HY  +VDLLGRA
Sbjct: 587 KMIESDVNPDEITFTSLLCACSRSGMVTDGLEYFESMEHKFHIAPNLKHYASVVDLLGRA 646

Query: 323 GKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQL 382
           G+L +A + IKKMP  P PAI+G LL+ACR+++ ++L E AA ++F ++   + G Y+ L
Sbjct: 647 GRLEDAYEFIKKMPIDPDPAIWGALLNACRIYQNVELGELAAQHIFEMD-TKSVGYYILL 705

Query: 383 ANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKL 442
            N+YA   KWD+VAR+R  M+EN +   PG SW+EV   VH F +GD  HP++  I+  L
Sbjct: 706 CNLYADSGKWDEVARVRKIMRENRLTVDPGCSWVEVAGQVHAFLTGDDFHPQIKEINAVL 765

Query: 443 KELEKRMKLAGYVPDLEFALHAVGEEV---KEQLLLFHSEKLAIAFGLIKVPLGTPIRVF 499
           +   ++M+  G    L  +  +  +++   K ++   HSE+LAIAFGLI    GTPI V 
Sbjct: 766 EGFYEKMEATG----LSMSKDSRRDDIDASKAEIFCGHSERLAIAFGLINTVPGTPIWVT 821

Query: 500 KNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGD--YW 545
           KNL +C +CH   K+IS + +R I VRDT +FHHFKDG CSCGD  YW
Sbjct: 822 KNLYMCENCHNTVKFISKVVRRGISVRDTEQFHHFKDGVCSCGDEGYW 869



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 98/368 (26%), Positives = 188/368 (51%), Gaps = 21/368 (5%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRL---P 66
           N++L+ F +  G L +A  +F K+ + D+ S+N+++      +     A + + R+    
Sbjct: 133 NALLSMFVR-FGDLVEAWYVFGKMAERDLFSWNVLVGG-YAKAGYFDEALNLYHRMLWVG 190

Query: 67  IK-DTASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMISGYIECGQLDKAV 121
           I+ D  ++  ++       ++A+ R++ L +     E +    +A+I+ Y++CG +  A 
Sbjct: 191 IRPDVYTFPCVLRTCGGLPDLARGREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSAR 250

Query: 122 ELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLG 181
            +F   P +  ++W AMISGY      EN    +GL+L  MM    + P+  +++SV+  
Sbjct: 251 LVFDRMPRRDRISWNAMISGYF-----ENDVCLEGLRLFFMMREFFVDPDLMTMTSVISA 305

Query: 182 CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTW 241
           C  L   +LG++VH  V K+    + +    LI M+   G  ++A  +F +++ KD+V+W
Sbjct: 306 CEALGDERLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSW 365

Query: 242 NAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN 301
            AMISGY ++G  EKA+  +  M+ EG+ PD IT  ++L AC   GL+D GI   +   +
Sbjct: 366 TAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLLDKGIMLHE-FAD 424

Query: 302 DYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAE 361
             G+ +       ++D+  +   + +A+++  ++P K   +    +L       RL+   
Sbjct: 425 RTGLTSYVIVANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTSIILGL-----RLNYRS 479

Query: 362 FAAMNLFN 369
           F A+  F 
Sbjct: 480 FEALFFFQ 487



 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 81/297 (27%), Positives = 137/297 (46%), Gaps = 46/297 (15%)

Query: 35  QPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFL 94
           + DV   N +++ + +   D+ +A   F R+P +D  SWN MISG+ +     +   LF 
Sbjct: 227 ESDVDVVNALIT-MYVKCGDIFSARLVFDRMPRRDRISWNAMISGYFENDVCLEGLRLFF 285

Query: 95  AMPE----KNSVSWSAMIS---------------GYI--------------------ECG 115
            M E     + ++ +++IS               GY+                      G
Sbjct: 286 MMREFFVDPDLMTMTSVISACEALGDERLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVG 345

Query: 116 QLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSL 175
             D+A  +F     K +V+WTAMISGY K     N   E  ++   +M   G+ P+  ++
Sbjct: 346 CWDEAEMVFSKMEFKDLVSWTAMISGYEK-----NGLPEKAVETYTIMEHEGVVPDEITI 400

Query: 176 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR 235
           +SVL  C+ L  L  G  +H+   ++ L         LI MY KC  ++ A ++F  I  
Sbjct: 401 ASVLSACAGLGLLDKGIMLHEFADRTGLTSYVIVANSLIDMYSKCRCIDKALEVFHRIPN 460

Query: 236 KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 292
           K+V++W ++I G   + +  +AL  F +M    +KP+S+T V++L AC   G +  G
Sbjct: 461 KNVISWTSIILGLRLNYRSFEALFFFQQMI-LSLKPNSVTLVSVLSACARIGALSCG 516


>gi|297839333|ref|XP_002887548.1| hypothetical protein ARALYDRAFT_339650 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297333389|gb|EFH63807.1| hypothetical protein ARALYDRAFT_339650 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1221

 Score =  366 bits (940), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 203/536 (37%), Positives = 307/536 (57%), Gaps = 40/536 (7%)

Query: 11  SVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDT 70
           + L G   + G +  A+++FD++PQP++V++N +++      +DV  A + F ++ +++ 
Sbjct: 312 TTLIGMYGECGCVGFARKVFDEMPQPNLVAWNAVVTA-CFRGNDVSGAREIFDKMLVRNH 370

Query: 71  ASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVK 130
            SWN M++G+++   +  A+ +F  MP ++ VSWS MI G+   G  +++   F+     
Sbjct: 371 TSWNVMLAGYIKAGELECAKRIFSEMPHRDDVSWSTMIVGFSHNGSFNESFSYFR----- 425

Query: 131 SVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQL 190
                                      +LLR      +RPN  SL+ VL  CS   + + 
Sbjct: 426 ---------------------------ELLRAE----MRPNEVSLTGVLSACSQSGAFEF 454

Query: 191 GKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK-DVVTWNAMISGYA 249
           GK +H  V KS      +    LI MY +CG++  A  +F  +Q K  +V+W +MI+G A
Sbjct: 455 GKTLHGFVEKSGYSWIVSVNNALIDMYSRCGNVPMARLVFEGMQEKRSIVSWTSMIAGLA 514

Query: 250 QHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKP 309
            HG GE+A+R+F++M + G+ PD I+F++LL AC+HAGL+  G  YF  M   Y I    
Sbjct: 515 MHGHGEEAIRIFNEMTESGVMPDEISFISLLYACSHAGLIKEGEGYFSKMKRVYHIEPAV 574

Query: 310 DHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFN 369
           +HY CMVDL GR+GKL +A   I +MP  P   ++ TLL AC  H  ++LAE     L  
Sbjct: 575 EHYGCMVDLYGRSGKLQKAYSFICQMPIPPTAIVWRTLLGACSSHGNIELAEQVKQRLNE 634

Query: 370 LNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGD 429
           L+P N +G  V L+N+YA   KW DVA IR SM    + K+  +S +EVG  +++F + +
Sbjct: 635 LDP-NNSGDLVLLSNVYATAGKWKDVASIRKSMIVQRIKKITAWSLVEVGKTMYKFTACE 693

Query: 430 RVHPELVSIHEKLKELEKRMK-LAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLI 488
           +     +  HEKLKE+  R++  AGY P++  AL+ V EE KE  +  HSEKLA+AF L 
Sbjct: 694 KKKEIDIEAHEKLKEIILRLRDEAGYAPEVASALYDVEEEEKEDQVSKHSEKLALAFALA 753

Query: 489 KVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDY 544
           ++P G  IR+ KNLR+C DCH   K  S +   EI++RD  RFH FKDG+CSCGDY
Sbjct: 754 RLPKGANIRIVKNLRICRDCHAVMKLTSRVYGVEIVIRDRNRFHSFKDGSCSCGDY 809



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 72/303 (23%), Positives = 131/303 (43%), Gaps = 49/303 (16%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M V+   +WN +LAG+ K  G+L+ A+ +F ++P  D VS++ M+     N      +F 
Sbjct: 365 MLVRNHTSWNVMLAGYIKA-GELECAKRIFSEMPHRDDVSWSTMIVGFSHNG-SFNESFS 422

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDL---FLAMPEKNSVSW-----SAMISGYI 112
           +F+ L   +       ++G +   + + A +         EK+  SW     +A+I  Y 
Sbjct: 423 YFRELLRAEMRPNEVSLTGVLSACSQSGAFEFGKTLHGFVEKSGYSWIVSVNNALIDMYS 482

Query: 113 ECGQLDKAVELFK-VAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPN 171
            CG +  A  +F+ +   +S+V+WT+MI+G    G+      E+ +++   M   G+ P+
Sbjct: 483 RCGNVPMARLVFEGMQEKRSIVSWTSMIAGLAMHGH-----GEEAIRIFNEMTESGVMPD 537

Query: 172 ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFL 231
             S  S+L  CSH   ++ G+     +      K    + P +  Y              
Sbjct: 538 EISFISLLYACSHAGLIKEGEGYFSKM------KRVYHIEPAVEHY-------------- 577

Query: 232 EIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDL 291
                       M+  Y + GK +KA     +M    + P +I +  LL AC+  G ++L
Sbjct: 578 ----------GCMVDLYGRSGKLQKAYSFICQMP---IPPTAIVWRTLLGACSSHGNIEL 624

Query: 292 GIQ 294
             Q
Sbjct: 625 AEQ 627



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 59/266 (22%), Positives = 109/266 (40%), Gaps = 47/266 (17%)

Query: 89  ARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYV 148
           AR L L  PE ++  ++ ++ GY E  +           P  SV  +  M    M+ G+ 
Sbjct: 225 ARRLLLCFPEPDAFMFNTLVRGYSESDE-----------PHNSVAVFVEM----MRKGF- 268

Query: 149 ENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTT 208
                              I P++ S + V+   ++  SL+ G Q+H    K  L     
Sbjct: 269 -------------------IFPDSFSFAFVVKAAANFRSLRTGFQMHCQALKHGLDSHLF 309

Query: 209 ALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEG 268
             T LI MY +CG +  A K+F E+ + ++V WNA+++   +      A  +FDKM    
Sbjct: 310 VATTLIGMYGECGCVGFARKVFDEMPQPNLVAWNAVVTACFRGNDVSGAREIFDKM---- 365

Query: 269 MKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEA 328
           +  +  ++  +L     AG ++   + F  M +   ++     ++ M+      G   E+
Sbjct: 366 LVRNHTSWNVMLAGYIKAGELECAKRIFSEMPHRDDVS-----WSTMIVGFSHNGSFNES 420

Query: 329 VDLIKKM---PFKPQPAIFGTLLSAC 351
               +++     +P       +LSAC
Sbjct: 421 FSYFRELLRAEMRPNEVSLTGVLSAC 446


>gi|225444752|ref|XP_002278169.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 596

 Score =  366 bits (940), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 210/551 (38%), Positives = 309/551 (56%), Gaps = 17/551 (3%)

Query: 5   TTVNWNSVLAGFAKQR--GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDF- 61
           T   +N+ + GF++ R  G L  +  LF ++    +   N   + +     + VA FD  
Sbjct: 53  TVFLFNTTIRGFSRARRPGSLLSSVLLFVRMGVLSLAPNNFTFTFLFQGCSNCVA-FDLG 111

Query: 62  --FQRLPIK-----DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIEC 114
             F  + IK     D    N++I  +     +  AR +F    E + VSW++MI G I  
Sbjct: 112 RQFHGMVIKNSFEMDVFVRNSIIRFYSVCGRLNDARWVFDESSELDVVSWNSMIDGCIRN 171

Query: 115 GQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASS 174
           G + +A+ LF     ++ ++W  MISGY      +N   ++ L L R M  L   PN++ 
Sbjct: 172 GNILEALSLFSKMTERNDISWNMMISGY-----AQNGQPKEALALFREMQMLDQEPNSAI 226

Query: 175 LSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ 234
           L SVL  CS L +L  G  VH  + K  +  D+     LI MY KCG ++ A + F   +
Sbjct: 227 LVSVLSACSQLGALDHGCWVHCYIGKKCVRVDSILSAALIDMYAKCGSIDLAMQAFSTSR 286

Query: 235 RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ 294
           ++DV  + A ISG A +G  E+AL+LF++MK EG+ PD ++++A+L AC+HAG V+ G  
Sbjct: 287 KRDVSAYTAAISGLAMNGCSEEALQLFEQMKGEGISPDGVSYIAVLCACSHAGWVEKGFH 346

Query: 295 YFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVH 354
           YF SM + +GI  + DHY CMVDLLGRAG L EA   +  MP KP   I+G LL ACRV+
Sbjct: 347 YFASMSDVHGIRPELDHYACMVDLLGRAGLLEEAEKFVASMPIKPDNVIWGALLGACRVY 406

Query: 355 KRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYS 414
              ++ +    +L   +  N  G Y+ L+NIYA   K +D  ++R +M+   V ++PG S
Sbjct: 407 GNAEMGQRVG-SLLVESDQNHDGRYILLSNIYAESMKGEDAEQVRKTMRRRKVDRVPGCS 465

Query: 415 WIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLL 474
            IEV   VHEF SGDR H +   I+   +E+ K +K  GY  +    +  V EE KE ++
Sbjct: 466 LIEVAGFVHEFFSGDRSHEKTEEIYLMWEEIVKEIKKFGYREETRAVVFDVEEEEKEAVI 525

Query: 475 LFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHF 534
             HSEKLA+AFG +    G+ +R+ KN+R+C DCH A K +S + KR+I +RD   FHHF
Sbjct: 526 GHHSEKLAVAFGFLYTKSGSTLRIVKNIRICSDCHYAIKLVSKVFKRKIAIRDRKCFHHF 585

Query: 535 KDGTCSCGDYW 545
           ++G CSC DYW
Sbjct: 586 EEGLCSCKDYW 596



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 70/268 (26%), Positives = 115/268 (42%), Gaps = 44/268 (16%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  +  ++WN +++G+A Q G+ K+A  LF ++   D             NS  +V+   
Sbjct: 184 MTERNDISWNMMISGYA-QNGQPKEALALFREMQMLDQEP----------NSAILVSVLS 232

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
              +L   D   W   +  ++ KK +             +S+  +A+I  Y +CG +D A
Sbjct: 233 ACSQLGALDHGCW---VHCYIGKKCV-----------RVDSILSAALIDMYAKCGSIDLA 278

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLL 180
           ++ F  +  + V A+TA IS     G   N  +E+ L+L   M G GI P+  S  +VL 
Sbjct: 279 MQAFSTSRKRDVSAYTAAIS-----GLAMNGCSEEALQLFEQMKGEGISPDGVSYIAVLC 333

Query: 181 GCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYC-------KCGDLEDACKLFLEI 233
            CSH   ++ G   H     S    D   + P +  Y        + G LE+A K    +
Sbjct: 334 ACSHAGWVEKG--FHYFASMS----DVHGIRPELDHYACMVDLLGRAGLLEEAEKFVASM 387

Query: 234 QRK-DVVTWNAMISGYAQHGKGEKALRL 260
             K D V W A++     +G  E   R+
Sbjct: 388 PIKPDNVIWGALLGACRVYGNAEMGQRV 415


>gi|356502788|ref|XP_003520198.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Glycine max]
          Length = 923

 Score =  366 bits (940), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 198/546 (36%), Positives = 311/546 (56%), Gaps = 33/546 (6%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M+ K  ++W +++AG+A+    L +A  LF K+ Q   +  + M+   +L +   + + +
Sbjct: 410 MHEKDLISWTTIIAGYAQNEFHL-EAINLFRKV-QVKGMDVDPMMIGSVLRACSGLKSRN 467

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
           F +             I G+V K+++A   D+ L          +A+++ Y E G +D A
Sbjct: 468 FIRE------------IHGYVFKRDLA---DIMLQ---------NAIVNVYGEVGHIDYA 503

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLL 180
              F+    K +V+WT+MI+       V N    + L+L   +    I+P++ ++ S L 
Sbjct: 504 RRAFESIRSKDIVSWTSMITCC-----VHNGLPVEALELFYSLKQTNIQPDSIAIISALS 558

Query: 181 GCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVT 240
             ++LSSL+ GK++H  + +     +    + L+ MY  CG +E++ K+F  ++++D++ 
Sbjct: 559 ATANLSSLKKGKEIHGFLIRKGFFLEGPIASSLVDMYACCGTVENSRKMFHSVKQRDLIL 618

Query: 241 WNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV 300
           W +MI+    HG G KA+ LF KM D+ + PD ITF+ALL AC+H+GL+  G ++F+ M 
Sbjct: 619 WTSMINANGMHGCGNKAIALFKKMTDQNVIPDHITFLALLYACSHSGLMVEGKRFFEIMK 678

Query: 301 NDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLA 360
             Y +   P+HY CMVDLL R+  L EA   ++ MP KP   I+  LL AC +H   +L 
Sbjct: 679 YGYQLEPWPEHYACMVDLLSRSNSLEEAYHFVRNMPIKPSSEIWCALLGACHIHSNKELG 738

Query: 361 EFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGT 420
           E AA  L   +  N +G Y  ++NI+AA  +W+DV  +RL MK N + K PG SWIEV  
Sbjct: 739 ELAAKELLQSDTEN-SGKYALISNIFAADGRWNDVEEVRLRMKGNGLKKNPGCSWIEVDN 797

Query: 421 VVHEFRSGDRVHPELVSIHEKLKELEKRM-KLAGYVPDLEFALHAVGEEVKEQLLLFHSE 479
            +H F + D+ HP+   I+ KL +  K + K  GY+   +F  H V EE K Q+L  HSE
Sbjct: 798 KIHTFMARDKSHPQTDDIYLKLAQFTKLLEKKGGYIAQTKFVFHNVSEEEKTQMLYGHSE 857

Query: 480 KLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTC 539
           +LA+ +GL+  P GT IR+ KNLR+C DCH   K  S + +R ++VRD  RFHHF+ G C
Sbjct: 858 RLALGYGLLVTPKGTCIRITKNLRICDDCHTFFKIASEVSQRPLVVRDANRFHHFERGLC 917

Query: 540 SCGDYW 545
           SCGD+W
Sbjct: 918 SCGDFW 923



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 102/443 (23%), Positives = 197/443 (44%), Gaps = 55/443 (12%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK----DTASWNTM 76
           G L+DA ++FD++ +  + S+N ++    ++S   + A + ++ + +     D  ++ ++
Sbjct: 93  GSLRDAVKVFDEMSERTIFSWNALMGA-FVSSGKYLEAIELYKDMRVLGVAIDACTFPSV 151

Query: 77  I---SGFVQKKNMAKARDLFLAMPEKNSV-SWSAMISGYIECGQLDKAVELFK--VAPVK 130
           +       + +  A+   + +       V   +A+I+ Y +CG L  A  LF   +   +
Sbjct: 152 LKACGALGESRLGAEIHGVAVKCGYGEFVFVCNALIAMYGKCGDLGGARVLFDGIMMEKE 211

Query: 131 SVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQL 190
             V+W ++IS ++  G        + L L R M  +G+  N  +  + L G    S ++L
Sbjct: 212 DTVSWNSIISAHVAEGN-----CLEALSLFRRMQEVGVASNTYTFVAALQGVEDPSFVKL 266

Query: 191 GKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQ 250
           G  +H  V KS    D      LI+MY KCG +EDA ++F  +  +D V+WN ++SG  Q
Sbjct: 267 GMGIHGAVLKSNHFADVYVANALIAMYAKCGRMEDAGRVFESMLCRDYVSWNTLLSGLVQ 326

Query: 251 HGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGL---------------VDLGIQY 295
           +     AL  F  M++ G KPD ++ + L+ A   +G                +D  +Q 
Sbjct: 327 NELYSDALNYFRDMQNSGQKPDQVSVLNLIAASGRSGNLLKGKEVHAYAIRNGLDSNMQI 386

Query: 296 FDSMVNDY---------GIAAKPDH------YTCMVDLLGRAGKLVEAVDLIKKMPFKP- 339
            +++V+ Y         G A +  H      +T ++    +    +EA++L +K+  K  
Sbjct: 387 GNTLVDMYAKCCCVKYMGHAFECMHEKDLISWTTIIAGYAQNEFHLEAINLFRKVQVKGM 446

Query: 340 --QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVAR 397
              P + G++L AC   K  +        +F  + A+       + N+Y  +   D   R
Sbjct: 447 DVDPMMIGSVLRACSGLKSRNFIREIHGYVFKRDLADIM-LQNAIVNVYGEVGHIDYARR 505

Query: 398 IRLSMKENNVVKMPGYSWIEVGT 420
              S++  ++V     SW  + T
Sbjct: 506 AFESIRSKDIV-----SWTSMIT 523



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 69/249 (27%), Positives = 125/249 (50%), Gaps = 23/249 (9%)

Query: 111 YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFG-YVENSWAEDGLKLLRMMIGLGIR 169
           Y +CG L  AV++F     +++ +W A++  ++  G Y+E       ++L + M  LG+ 
Sbjct: 89  YGKCGSLRDAVKVFDEMSERTIFSWNALMGAFVSSGKYLE------AIELYKDMRVLGVA 142

Query: 170 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 229
            +A +  SVL  C  L   +LG ++H +  K    +       LI+MY KCGDL  A  L
Sbjct: 143 IDACTFPSVLKACGALGESRLGAEIHGVAVKCGYGEFVFVCNALIAMYGKCGDLGGARVL 202

Query: 230 F--LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG 287
           F  + ++++D V+WN++IS +   G   +AL LF +M++ G+  ++ TFVA L       
Sbjct: 203 FDGIMMEKEDTVSWNSIISAHVAEGNCLEALSLFRRMQEVGVASNTYTFVAALQGVEDPS 262

Query: 288 LVDLGIQYFDSMVNDYGIAAKPDHY------TCMVDLLGRAGKLVEAVDLIKKMPFKPQP 341
            V LG+         +G   K +H+        ++ +  + G++ +A  + + M  +   
Sbjct: 263 FVKLGMGI-------HGAVLKSNHFADVYVANALIAMYAKCGRMEDAGRVFESMLCRDYV 315

Query: 342 AIFGTLLSA 350
           + + TLLS 
Sbjct: 316 S-WNTLLSG 323



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 95/384 (24%), Positives = 168/384 (43%), Gaps = 66/384 (17%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  + TV+WNS+++    + G   +A  LF ++ +  V S          N+   VAA  
Sbjct: 208 MEKEDTVSWNSIISAHVAE-GNCLEALSLFRRMQEVGVAS----------NTYTFVAAL- 255

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
             Q +           I G V K N     D+++A         +A+I+ Y +CG+++ A
Sbjct: 256 --QGVEDPSFVKLGMGIHGAVLKSN--HFADVYVA---------NALIAMYAKCGRMEDA 302

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLL 180
             +F+    +  V+W  ++SG      V+N    D L   R M   G +P+  S+ +++ 
Sbjct: 303 GRVFESMLCRDYVSWNTLLSGL-----VQNELYSDALNYFRDMQNSGQKPDQVSVLNLIA 357

Query: 181 GCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVT 240
                 +L  GK+VH    ++ L  +      L+ MY KC  ++     F  +  KD+++
Sbjct: 358 ASGRSGNLLKGKEVHAYAIRNGLDSNMQIGNTLVDMYAKCCCVKYMGHAFECMHEKDLIS 417

Query: 241 WNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN-----------HA--- 286
           W  +I+GYAQ+    +A+ LF K++ +GM  D +   ++L AC+           H    
Sbjct: 418 WTTIIAGYAQNEFHLEAINLFRKVQVKGMDVDPMMIGSVLRACSGLKSRNFIREIHGYVF 477

Query: 287 --GLVDLGIQYFDSMVNDYGIAAKPDH---------------YTCMVDLLGRAGKLVEAV 329
              L D+ +Q  +++VN YG     D+               +T M+      G  VEA+
Sbjct: 478 KRDLADIMLQ--NAIVNVYGEVGHIDYARRAFESIRSKDIVSWTSMITCCVHNGLPVEAL 535

Query: 330 DL---IKKMPFKPQPAIFGTLLSA 350
           +L   +K+   +P      + LSA
Sbjct: 536 ELFYSLKQTNIQPDSIAIISALSA 559



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 77/150 (51%), Gaps = 15/150 (10%)

Query: 182 CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTW 241
           C    +L  G+Q+H L+ KS L       T L+ MY KCG L DA K+F E+  + + +W
Sbjct: 56  CVAAKALPQGQQLHALLLKSHL--SAFLATKLVLMYGKCGSLRDAVKVFDEMSERTIFSW 113

Query: 242 NAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN 301
           NA++  +   GK  +A+ L+  M+  G+  D+ TF ++L AC   G   LG +       
Sbjct: 114 NALMGAFVSSGKYLEAIELYKDMRVLGVAIDACTFPSVLKACGALGESRLGAEI------ 167

Query: 302 DYGIAAKPDH----YTC--MVDLLGRAGKL 325
            +G+A K  +    + C  ++ + G+ G L
Sbjct: 168 -HGVAVKCGYGEFVFVCNALIAMYGKCGDL 196


>gi|297844796|ref|XP_002890279.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336121|gb|EFH66538.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 953

 Score =  366 bits (940), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 204/545 (37%), Positives = 308/545 (56%), Gaps = 18/545 (3%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQR----- 64
           N+ +A +AK  G L  AQ +F  I    + S+N ++     +SD  ++     Q      
Sbjct: 418 NAFVASYAKC-GSLSYAQRVFHGIRSKTLNSWNALIGGYAQSSDPRLSLDAHLQMKNSGL 476

Query: 65  LPIKDTASWNTMISGFVQKKNMAKARDL--FLAMP--EKNSVSWSAMISGYIECGQLDKA 120
           LP  D  +  +++S   + K++   +++  F+     E++   + +++S YI CG+L   
Sbjct: 477 LP--DNFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTV 534

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLL 180
             LF      S+V+W  +I+G++     +N + E  L L R M+  GI+P   S+ +V  
Sbjct: 535 QVLFDAMEDNSLVSWNTVITGHL-----QNGFPERALGLFRQMVLYGIQPCGISMMTVFG 589

Query: 181 GCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVT 240
            CS L SL+LG++ H    K  L  +      +I MY K G +  + K+F  ++ K   +
Sbjct: 590 ACSLLPSLRLGREAHAYALKHLLEDNAFIACSIIDMYAKNGAITQSSKVFNGLKEKSAAS 649

Query: 241 WNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV 300
           WNAMI GY  HG+ ++A++LF++M+  G  PD +TF+ +L ACNH+GL+  G++Y D M 
Sbjct: 650 WNAMIMGYGMHGRAKEAIKLFEEMQRTGRNPDDLTFLGVLTACNHSGLLHEGLRYLDQMK 709

Query: 301 NDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLA 360
           + +G+     HY C++D+LGRAG+L  A+ +  +M  +P   I+ +LLS CR+H+ L++ 
Sbjct: 710 SSFGLKPNLKHYACVIDMLGRAGQLDNALRVAAEMSEEPDVGIWNSLLSWCRIHQNLEMG 769

Query: 361 EFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGT 420
           E  A  LF L P      YV L+N+YA + KWDDV ++R  MKE ++ K  G SWIE+  
Sbjct: 770 EKVAAKLFVLEPEKPEN-YVLLSNLYAGLGKWDDVRQVRQRMKEMSLRKDAGCSWIELNG 828

Query: 421 VVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEK 480
            V  F  G+R       I      LE ++   GY PD     H + EE K + L  HSEK
Sbjct: 829 KVFSFVVGERFLDGFEEIKSLWSILEMKIWKMGYRPDTSSVQHDLSEEEKIEQLRGHSEK 888

Query: 481 LAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCS 540
           LAI +GLIK   GT +RV+KNLR+C DCH A K IS + +REI+VRD  RFHHF  G CS
Sbjct: 889 LAITYGLIKTSEGTTLRVYKNLRICVDCHNAAKLISKVMEREIVVRDNKRFHHFNKGFCS 948

Query: 541 CGDYW 545
           CGDYW
Sbjct: 949 CGDYW 953



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 76/285 (26%), Positives = 138/285 (48%), Gaps = 16/285 (5%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRL--PI 67
           N+ L     + G + D+Q +F      +VVS+N M+        D+   FD  +++    
Sbjct: 314 NNALMDMYSKWGCIIDSQMIFKLNNNKNVVSWNTMVGGFSAEG-DIHGTFDLLRQMLAGS 372

Query: 68  KDTASWNTMISGFV----QKKNMAKARDLFLAMPEKNSVS----WSAMISGYIECGQLDK 119
           +D  +    I   V     +  +   ++L     ++  V      +A ++ Y +CG L  
Sbjct: 373 EDVKADEVTILNAVPVCFDESVLPSLKELHCYSLKQEFVYDELLANAFVASYAKCGSLSY 432

Query: 120 AVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVL 179
           A  +F     K++ +W A+I      GY ++S     L     M   G+ P+  ++ S+L
Sbjct: 433 AQRVFHGIRSKTLNSWNALIG-----GYAQSSDPRLSLDAHLQMKNSGLLPDNFTVCSLL 487

Query: 180 LGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVV 239
             CS L SL+LGK+VH  + ++ L +D      ++S+Y  CG+L     LF  ++   +V
Sbjct: 488 SACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQVLFDAMEDNSLV 547

Query: 240 TWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 284
           +WN +I+G+ Q+G  E+AL LF +M   G++P  I+ + +  AC+
Sbjct: 548 SWNTVITGHLQNGFPERALGLFRQMVLYGIQPCGISMMTVFGACS 592



 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 77/300 (25%), Positives = 145/300 (48%), Gaps = 22/300 (7%)

Query: 11  SVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDT 70
           + L  F    G + DA +LFD +P+ ++VS+N M+     N DD   AF       + D 
Sbjct: 226 NALVSFYGTHGFVSDALKLFDIMPERNLVSWNSMIRVFSDNGDD--GAF-------MPDV 276

Query: 71  ASWNTMISGFVQKKNMAKARDLF-----LAMPEKNSVSWSAMISGYIECGQLDKAVELFK 125
           A+  T++    +++ +   + +      L++ +K  V  +A++  Y + G +  +  +FK
Sbjct: 277 ATVVTVLPVCAREREIGVGKGVHGWAVKLSL-DKELVVNNALMDMYSKWGCIIDSQMIFK 335

Query: 126 VAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLG--IRPNASSLSSVLLGCS 183
           +   K+VV+W  M+ G+   G +  ++      LLR M+     ++ +  ++ + +  C 
Sbjct: 336 LNNNKNVVSWNTMVGGFSAEGDIHGTF-----DLLRQMLAGSEDVKADEVTILNAVPVCF 390

Query: 184 HLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNA 243
             S L   K++H    K     D       ++ Y KCG L  A ++F  I+ K + +WNA
Sbjct: 391 DESVLPSLKELHCYSLKQEFVYDELLANAFVASYAKCGSLSYAQRVFHGIRSKTLNSWNA 450

Query: 244 MISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDY 303
           +I GYAQ      +L    +MK+ G+ PD+ T  +LL AC+    + LG +    ++ ++
Sbjct: 451 LIGGYAQSSDPRLSLDAHLQMKNSGLLPDNFTVCSLLSACSKLKSLRLGKEVHGFIIRNW 510



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 50/189 (26%), Positives = 88/189 (46%), Gaps = 18/189 (9%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKL-LRMM 163
           + +I+ Y  CG  D +   F     K++  W A+IS Y +     N    + L++ ++M+
Sbjct: 124 TRIITMYAMCGSPDDSRSAFDALRSKNLFQWNAVISSYSR-----NELYHEVLEMFIKMI 178

Query: 164 IGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDL 223
               + P+  +   V+  C+ +S + +G  VH LV K+ L +D      L+S Y   G +
Sbjct: 179 SKTHLLPDNFTFPCVIKACAGISDVGIGLAVHGLVVKTGLVEDLFVGNALVSFYGTHGFV 238

Query: 224 EDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC 283
            DA KLF  +  +++V+WN+MI  ++ +G             D    PD  T V +L  C
Sbjct: 239 SDALKLFDIMPERNLVSWNSMIRVFSDNG------------DDGAFMPDVATVVTVLPVC 286

Query: 284 NHAGLVDLG 292
                + +G
Sbjct: 287 AREREIGVG 295



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/152 (30%), Positives = 78/152 (51%), Gaps = 5/152 (3%)

Query: 188 LQLGKQVHQLVFKSP-LCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMIS 246
           +++G+++H LV  S  L  D    T +I+MY  CG  +D+   F  ++ K++  WNA+IS
Sbjct: 100 IEMGRKIHHLVSGSTRLRSDDVLCTRIITMYAMCGSPDDSRSAFDALRSKNLFQWNAVIS 159

Query: 247 GYAQHGKGEKALRLFDKM-KDEGMKPDSITFVALLLACNHAGLVDLGIQY-FDSMVNDYG 304
            Y+++    + L +F KM     + PD+ TF  ++ AC  AG+ D+GI      +V   G
Sbjct: 160 SYSRNELYHEVLEMFIKMISKTHLLPDNFTFPCVIKAC--AGISDVGIGLAVHGLVVKTG 217

Query: 305 IAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 336
           +         +V   G  G + +A+ L   MP
Sbjct: 218 LVEDLFVGNALVSFYGTHGFVSDALKLFDIMP 249


>gi|347954528|gb|AEP33764.1| organelle transcript processing 82, partial [Iberis amara]
          Length = 666

 Score =  366 bits (940), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 203/536 (37%), Positives = 302/536 (56%), Gaps = 48/536 (8%)

Query: 19  QRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMIS 78
           Q G+L+DA ++FD+ P  DVVSY  ++     +   +  A   F  +P+KD  SWN MIS
Sbjct: 138 QNGRLEDAHKVFDESPHRDVVSYTALIKG-YASRGYIENAQKMFDEIPVKDVVSWNAMIS 196

Query: 79  GFVQKKNMAKARDLFLAM------PEKNSV--------------------SW-------- 104
           G+ +  N  +A +LF  M      P+++++                    SW        
Sbjct: 197 GYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHSWIDDHGFGS 256

Query: 105 -----SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKL 159
                +A+I  Y +CG+L+ A  LF+  P K V++W  +I GY      +     + L L
Sbjct: 257 NLKIVNALIDLYSKCGELETACGLFEGLPYKDVISWNTLIGGYTHMNLYK-----EALLL 311

Query: 160 LRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK--SPLCKDTTALTPLISMY 217
            + M+  G  PN  ++ S+L  C+HL ++ +G+ +H  + K    +   ++  T LI MY
Sbjct: 312 FQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVANASSLRTSLIDMY 371

Query: 218 CKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFV 277
            KCGD+E A ++F  I  K + +WNAMI G+A HG+ + +  +F +M+  G++PD ITFV
Sbjct: 372 AKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDIFSRMRKNGIEPDDITFV 431

Query: 278 ALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPF 337
            LL AC+H+G++DLG   F SM  DY +  K +HY CM+DLLG +G   EA ++I  M  
Sbjct: 432 GLLSACSHSGMLDLGRHIFRSMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINTMEM 491

Query: 338 KPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVAR 397
           +P   I+ +LL AC++H  ++L E  A NL  + P N  G YV L+NIYA   +W++VA 
Sbjct: 492 EPDGVIWCSLLKACKMHGNVELGESFAQNLIKIEPEN-PGSYVLLSNIYATAGRWNEVAN 550

Query: 398 IRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPD 457
            R  + +  + K+PG S IE+ +VVHEF  GD+ HP    I+  L+E+E  ++ AG+VPD
Sbjct: 551 TRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEEAGFVPD 610

Query: 458 LEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATK 513
               L  + EE KE  L  HSEKLAIAFGLI    GT + + KNLRVC +CH A K
Sbjct: 611 TSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEAYK 666



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 92/299 (30%), Positives = 160/299 (53%), Gaps = 15/299 (5%)

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVV 133
            ++IS +VQ   +  A  +F   P ++ VS++A+I GY   G ++ A ++F   PVK VV
Sbjct: 130 TSLISMYVQNGRLEDAHKVFDESPHRDVVSYTALIKGYASRGYIENAQKMFDEIPVKDVV 189

Query: 134 AWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ 193
           +W AMISGY + G       ++ L+L + M+   +RP+ S++ +V+  C+   S++LG+Q
Sbjct: 190 SWNAMISGYAETGNY-----KEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQ 244

Query: 194 VHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGK 253
           VH  +       +   +  LI +Y KCG+LE AC LF  +  KDV++WN +I GY     
Sbjct: 245 VHSWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFEGLPYKDVISWNTLIGGYTHMNL 304

Query: 254 GEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ---YFDSMVNDYGIAAKPD 310
            ++AL LF +M   G  P+ +T +++L AC H G +D+G     Y D  +   G+A    
Sbjct: 305 YKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLK--GVANASS 362

Query: 311 HYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFN 369
             T ++D+  + G +  A  +   +  K   + +  ++    +H R D    A+ ++F+
Sbjct: 363 LRTSLIDMYAKCGDIEAAHQVFNSILHKSLSS-WNAMIFGFAMHGRAD----ASFDIFS 416



 Score =  118 bits (295), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 79/253 (31%), Positives = 120/253 (47%), Gaps = 37/253 (14%)

Query: 117 LDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLS 176
           L  A+ +F+     +++ W  M  G+       +S     LKL   MI LG+ PN+ +  
Sbjct: 41  LPYAISVFETIQEPNLLIWNTMFRGH-----ALSSDPVSALKLYVCMISLGLLPNSYTFP 95

Query: 177 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK-------- 228
            +L  C+   + + G+Q+H  V K     D    T LISMY + G LEDA K        
Sbjct: 96  FLLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDESPHR 155

Query: 229 -----------------------LFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMK 265
                                  +F EI  KDVV+WNAMISGYA+ G  ++AL LF  M 
Sbjct: 156 DVVSYTALIKGYASRGYIENAQKMFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMM 215

Query: 266 DEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKL 325
              ++PD  T V ++ AC  +G ++LG Q   S ++D+G  +       ++DL  + G+L
Sbjct: 216 KTNVRPDESTMVTVVSACAQSGSIELGRQ-VHSWIDDHGFGSNLKIVNALIDLYSKCGEL 274

Query: 326 VEAVDLIKKMPFK 338
             A  L + +P+K
Sbjct: 275 ETACGLFEGLPYK 287


>gi|414869795|tpg|DAA48352.1| TPA: hypothetical protein ZEAMMB73_382586 [Zea mays]
          Length = 687

 Score =  366 bits (940), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 188/448 (41%), Positives = 274/448 (61%), Gaps = 9/448 (2%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
           N+++  ++K +G L DA+++FD++   DVVS+N  ++  ++   +V AA   F  +P KD
Sbjct: 240 NALIDAYSKNQG-LSDAKKVFDEMTTRDVVSWNTAMAA-MVRQGEVDAARSMFDEMPEKD 297

Query: 70  TASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPV 129
           T SWNTM+ G+ +     KA +LF  MP +N VSWS ++S Y + G ++ A  +F   P 
Sbjct: 298 TVSWNTMLDGYAKAGEAEKAFELFQRMPGRNVVSWSTVVSAYCKKGDMEMARVIFDKMPA 357

Query: 130 KSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQ 189
           K++V WT M+S   + G VE     +  +L   M+   I  +  ++ S+L  C+   SL 
Sbjct: 358 KNLVTWTIMVSACAQKGLVE-----EAGRLFTEMMDAAIELDVIAVVSILAACAESGSLA 412

Query: 190 LGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF-LEIQRKDVVTWNAMISGY 248
           LGK++H+ V +  L + T     L+ M+CKCG +  A  +F  EI  KD+V+WN +I G+
Sbjct: 413 LGKRIHRHVRQRKLSRSTLVCNALMDMFCKCGCVNRADYIFDTEIVEKDLVSWNIIIGGF 472

Query: 249 AQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK 308
           A HG GEKAL LF +MK +G  PD++T + +L AC H GLV+ G ++F +M  DYGI  +
Sbjct: 473 AMHGPGEKALELFAQMKQQGFHPDAVTLINVLSACTHMGLVEEGRRFFANMETDYGIKPQ 532

Query: 309 PDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLF 368
            +HY CMVDLLGR G + EAVD+IK+MP++P   I+G+LLSACR+HK ++ AE A   L 
Sbjct: 533 IEHYGCMVDLLGRGGLIKEAVDMIKRMPWEPNEVIWGSLLSACRLHKNVEYAELAVNELS 592

Query: 369 NLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSG 428
           NL P+ +AG Y  L+NIYA   KW D+A+ R+ MK     K  G SWIE+    HEF  G
Sbjct: 593 NLQPS-SAGNYAVLSNIYAEAGKWSDMAKARVQMKGTGSQKTAGSSWIELNEAFHEFTVG 651

Query: 429 DRVHPELVSIHEKLKELEKRMKLAGYVP 456
           DR HPE   I + +  L   +K  G VP
Sbjct: 652 DRKHPESDQISDMIDRLSSHVKFVGCVP 679



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 46/192 (23%), Positives = 86/192 (44%), Gaps = 10/192 (5%)

Query: 160 LRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCK 219
           L + + + +R   +   S L+     + L   +  H  V K    +DT     LI  Y K
Sbjct: 189 LAVFLDVPLRQRGTFTYSFLIKALAAAGLTPVRGAHAHVVKLGSAEDTFVGNALIDAYSK 248

Query: 220 CGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVAL 279
              L DA K+F E+  +DVV+WN  ++   + G+ + A  +FD+M ++    D++++  +
Sbjct: 249 NQGLSDAKKVFDEMTTRDVVSWNTAMAAMVRQGEVDAARSMFDEMPEK----DTVSWNTM 304

Query: 280 LLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKP 339
           L     AG  +   + F  M     ++     ++ +V    + G +  A  +  KMP K 
Sbjct: 305 LDGYAKAGEAEKAFELFQRMPGRNVVS-----WSTVVSAYCKKGDMEMARVIFDKMPAK- 358

Query: 340 QPAIFGTLLSAC 351
               +  ++SAC
Sbjct: 359 NLVTWTIMVSAC 370


>gi|357128220|ref|XP_003565772.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g13230, mitochondrial-like [Brachypodium distachyon]
          Length = 1206

 Score =  366 bits (939), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 208/534 (38%), Positives = 297/534 (55%), Gaps = 17/534 (3%)

Query: 21   GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTM-ISG 79
            G ++DA+  F+ +   DV+ +++M+S      +    AF+ F R+ ++ + S N   +S 
Sbjct: 681  GNIEDARLAFEMVTNDDVILWSLMIS-RYAQCNQNEQAFELFIRM-MRSSVSPNEFSLSS 738

Query: 80   FVQKKNMAKARDLFLAMP--------EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKS 131
             +Q        DL   +         E      +A+I  Y +C  ++ ++E+F      +
Sbjct: 739  VLQACANMPLLDLGKQIHNHAIKIGHESELFVGNALIDLYAKCSDMESSLEIFSSLRDVN 798

Query: 132  VVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLG 191
             V+W  +I GY K G+      E  L + R M    +     + SSVL  C+  +S+   
Sbjct: 799  EVSWNTIIVGYSKSGF-----GEAALSVFREMRAASVPSTQVTYSSVLRACASTASINHV 853

Query: 192  KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQH 251
             QVH L+ KS    DT     LI  Y KCG + DA ++F  ++  D+V+WNA+ISGYA H
Sbjct: 854  GQVHCLIEKSTFNSDTIVSNSLIDSYAKCGCIRDAREIFETLKECDLVSWNAIISGYAVH 913

Query: 252  GKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDH 311
            G+   A  LFD M    +K + ITFVALL  C   GLV  G+  FDSM  D+GI    +H
Sbjct: 914  GQAAMAQELFDMMSKNSIKANDITFVALLSVCGSTGLVSQGLSLFDSMRLDHGIEPSMEH 973

Query: 312  YTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLN 371
            YTC+V LLGRAG+L +A++ I  +P  P   ++  LLS+C VHK ++L  F+A  +  + 
Sbjct: 974  YTCIVRLLGRAGRLNDALNFIGDIPSAPSAMVWRALLSSCIVHKNVELGRFSAEKVLEIE 1033

Query: 372  PANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRV 431
            P +    YV L+N+Y+A    D VA  R SM+   V K PG SW+E+   VH F  G   
Sbjct: 1034 PQDET-TYVLLSNMYSAAGSLDQVAFFRKSMRNIGVRKEPGLSWVEIKGEVHAFSVGSED 1092

Query: 432  HPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVP 491
            HP +  I+  L+ L  +    GYVPD +  LH + EE K ++L  HSE+LA+A+GL+  P
Sbjct: 1093 HPCMRVINAMLEWLNLKAIREGYVPDTDEVLHDLEEEQKVRMLWVHSERLALAYGLVMTP 1152

Query: 492  LGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
             G PIR+ KNLR C DCH   K IS I K+EIIVRD  RFHHF++GTCSCGDYW
Sbjct: 1153 PGHPIRIMKNLRSCLDCHAIFKVISKIVKQEIIVRDINRFHHFEEGTCSCGDYW 1206



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 87/298 (29%), Positives = 139/298 (46%), Gaps = 14/298 (4%)

Query: 11  SVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK-- 68
           +VL     + G    A  +FD +P+ ++VS+  ++    L  +    A   FQRL  +  
Sbjct: 469 NVLLNMYTKVGPFGSAHRVFDGLPERNMVSFVTLVQGHALRGE-FEEASALFQRLRWEGH 527

Query: 69  --DTASWNTMISGFVQKKNMAKARDLFLAM----PEKNSVSWSAMISGYIECGQLDKAVE 122
             +     T++   V    +  A  +         ++N+   SA+I  Y  CG +  A  
Sbjct: 528 EVNQFVLTTVLKLVVAMDTLGLAWGVHACACKLGHDRNAFVGSALIDAYSMCGVVSDARR 587

Query: 123 LFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGC 182
           +F     K  VAWTAM+S Y      EN   E+ L++   M     + N  +L+SVL   
Sbjct: 588 VFDGIVGKDAVAWTAMVSCYS-----ENDCPENTLQIFSKMRVAVSKLNPFALTSVLRAA 642

Query: 183 SHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWN 242
             LSS+ LGK +H    K+    +      L+ MY KCG++EDA   F  +   DV+ W+
Sbjct: 643 VCLSSVVLGKGIHACSVKTLYDTERHVYGALLDMYAKCGNIEDARLAFEMVTNDDVILWS 702

Query: 243 AMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV 300
            MIS YAQ  + E+A  LF +M    + P+  +  ++L AC +  L+DLG Q  +  +
Sbjct: 703 LMISRYAQCNQNEQAFELFIRMMRSSVSPNEFSLSSVLQACANMPLLDLGKQIHNHAI 760



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 61/260 (23%), Positives = 112/260 (43%), Gaps = 31/260 (11%)

Query: 77  ISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWT 136
           + G V +       DLF A         + +++ Y + G    A  +F   P +++V++ 
Sbjct: 450 VHGHVVRSGGLARLDLFCA---------NVLLNMYTKVGPFGSAHRVFDGLPERNMVSFV 500

Query: 137 AMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQ 196
            ++ G+   G  E + A     L + +   G   N   L++VL     + +L L   VH 
Sbjct: 501 TLVQGHALRGEFEEASA-----LFQRLRWEGHEVNQFVLTTVLKLVVAMDTLGLAWGVHA 555

Query: 197 LVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEK 256
              K    ++    + LI  Y  CG + DA ++F  I  KD V W AM+S Y+++   E 
Sbjct: 556 CACKLGHDRNAFVGSALIDAYSMCGVVSDARRVFDGIVGKDAVAWTAMVSCYSENDCPEN 615

Query: 257 ALRLFDKMK--DEGMKPDSITFVALLLACNHAGLVDLGIQ------YFDSMVNDYGIAAK 308
            L++F KM+     + P ++T V     C  + ++  GI        +D+  + YG    
Sbjct: 616 TLQIFSKMRVAVSKLNPFALTSVLRAAVCLSSVVLGKGIHACSVKTLYDTERHVYG---- 671

Query: 309 PDHYTCMVDLLGRAGKLVEA 328
                 ++D+  + G + +A
Sbjct: 672 -----ALLDMYAKCGNIEDA 686


>gi|359480506|ref|XP_003632478.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 590

 Score =  366 bits (939), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 199/507 (39%), Positives = 293/507 (57%), Gaps = 62/507 (12%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLS-CILLNSDDVVAAF 59
           M  + TV+WNS++ G+ K  G   +++ LF  +P  +VVS+N M++ CI    + +  A+
Sbjct: 73  MPHRDTVSWNSIITGYWKN-GCFDESKRLFGLMPTKNVVSWNSMIAGCI--EDERIDEAW 129

Query: 60  DFFQRLPIKDTASWNTMISGFVQ---------------KKN----------------MAK 88
            +FQ +P ++TASWN MISG V+               ++N                + +
Sbjct: 130 QYFQAMPQRNTASWNAMISGLVRYDRVEEASRLFEEMPRRNVISYTAMVDGYAKIGEIEQ 189

Query: 89  ARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMK---- 144
           AR LF  MP+KN VSW+ MISGY+E G+ D+A  LF+  P K++VA TAMI+GY K    
Sbjct: 190 ARALFNCMPQKNVVSWTVMISGYVENGKFDEAENLFEQMPDKNIVAMTAMITGYCKEGKT 249

Query: 145 ----------------------FGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGC 182
                                  GY +N   E+ LKL   M+ +G++P+ S+L SVL  C
Sbjct: 250 DKAKILFDQIPCRDLASWNAMITGYAQNGSGEEALKLHSQMLKMGMQPDHSTLISVLTAC 309

Query: 183 SHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWN 242
           S L+SLQ G++ H LV KS      +    LI+MYCKCG + D+   F +I   DVV+WN
Sbjct: 310 SSLASLQEGRKTHVLVLKSGYESRISICNALITMYCKCGSILDSELAFRQIDHPDVVSWN 369

Query: 243 AMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVND 302
           AMI+ +A+HG  ++AL  F +M+   ++PD ITF++LL AC HAG V   + +F+SM+  
Sbjct: 370 AMIAAFARHGFYDRALASFGEMRSNRVEPDGITFLSLLSACGHAGKVHESLNWFNSMIES 429

Query: 303 YGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEF 362
           Y I  +P+H+ C+VD+L R G++ +A  +I++MPF+    I+G LL+AC VH  + L E 
Sbjct: 430 YKIVPRPEHFACLVDILSRGGQVEKAYKIIQEMPFEADCGIWGALLAACHVHLNVKLGEL 489

Query: 363 AAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVV 422
           AA  +  L P N +G YV L+NIYAA   W +V R+R  M+E  V K P YSW+E+   V
Sbjct: 490 AAKKIVELEPQN-SGAYVVLSNIYAAAGMWGEVTRVRGLMREQGVKKQPAYSWMEIDNKV 548

Query: 423 HEFRSGDRVHPELVSIHEKLKELEKRM 449
           H F   D  HPE+  I  +LK ++ +M
Sbjct: 549 HFFLGDDASHPEIHRIRLELKGMKLQM 575



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 108/368 (29%), Positives = 197/368 (53%), Gaps = 26/368 (7%)

Query: 11  SVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRL----P 66
           +V  G   + G +  A++LFD++P  D VS+N +++    N       FD  +RL    P
Sbjct: 51  NVQIGNLARAGNIGAARQLFDEMPHRDTVSWNSIITGYWKN-----GCFDESKRLFGLMP 105

Query: 67  IKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKV 126
            K+  SWN+MI+G ++ + + +A   F AMP++N+ SW+AMISG +   ++++A  LF+ 
Sbjct: 106 TKNVVSWNSMIAGCIEDERIDEAWQYFQAMPQRNTASWNAMISGLVRYDRVEEASRLFEE 165

Query: 127 APVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLS 186
            P ++V+++TAM+ GY K G +E + A     L   M      P  + +S  ++   ++ 
Sbjct: 166 MPRRNVISYTAMVDGYAKIGEIEQARA-----LFNCM------PQKNVVSWTVMISGYVE 214

Query: 187 SLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMIS 246
           + +  +   + +F+    K+  A+T +I+ YCK G  + A  LF +I  +D+ +WNAMI+
Sbjct: 215 NGKFDEA--ENLFEQMPDKNIVAMTAMITGYCKEGKTDKAKILFDQIPCRDLASWNAMIT 272

Query: 247 GYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIA 306
           GYAQ+G GE+AL+L  +M   GM+PD  T +++L AC+    +  G +    +V   G  
Sbjct: 273 GYAQNGSGEEALKLHSQMLKMGMQPDHSTLISVLTACSSLASLQEG-RKTHVLVLKSGYE 331

Query: 307 AKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLD--LAEFAA 364
           ++      ++ +  + G ++++ +L  +    P    +  +++A   H   D  LA F  
Sbjct: 332 SRISICNALITMYCKCGSILDS-ELAFRQIDHPDVVSWNAMIAAFARHGFYDRALASFGE 390

Query: 365 MNLFNLNP 372
           M    + P
Sbjct: 391 MRSNRVEP 398



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 52/222 (23%), Positives = 97/222 (43%), Gaps = 16/222 (7%)

Query: 190 LGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYA 249
             +Q H L  K    +D  A    I    + G++  A +LF E+  +D V+WN++I+GY 
Sbjct: 30  FNRQFHPLSIKLFSTQDVYAFNVQIGNLARAGNIGAARQLFDEMPHRDTVSWNSIITGYW 89

Query: 250 QHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKP 309
           ++G  +++ RLF  M  + +    +++ +++  C     +D   QYF +M      +   
Sbjct: 90  KNGCFDESKRLFGLMPTKNV----VSWNSMIAGCIEDERIDEAWQYFQAMPQRNTAS--- 142

Query: 310 DHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEF-AAMNLF 368
             +  M+  L R  ++ EA  L ++MP +        +     V     + E   A  LF
Sbjct: 143 --WNAMISGLVRYDRVEEASRLFEEMPRR------NVISYTAMVDGYAKIGEIEQARALF 194

Query: 369 NLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKM 410
           N  P      +  + + Y    K+D+   +   M + N+V M
Sbjct: 195 NCMPQKNVVSWTVMISGYVENGKFDEAENLFEQMPDKNIVAM 236


>gi|242061934|ref|XP_002452256.1| hypothetical protein SORBIDRAFT_04g022510 [Sorghum bicolor]
 gi|241932087|gb|EES05232.1| hypothetical protein SORBIDRAFT_04g022510 [Sorghum bicolor]
          Length = 590

 Score =  366 bits (939), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 193/448 (43%), Positives = 269/448 (60%), Gaps = 11/448 (2%)

Query: 102 VSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLR 161
           VSW+ M+SGY +CG L+ A E+F   P + +V+W+AMI   ++ G        + L++  
Sbjct: 150 VSWNTMVSGYGKCGDLEAAREVFVRMPERGLVSWSAMIDACVRTGEFS-----EALRVFD 204

Query: 162 MMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCK---DTTALTPLISMYC 218
            M G G +P+A  L SVL  C+HL +L+ G+ VH+ +    L     +    T L+ MYC
Sbjct: 205 QMTGNGFKPDAVVLVSVLKTCAHLGALERGRWVHRFLKAERLGGRPGNVMLETALVDMYC 264

Query: 219 KCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVA 278
           KCG + +A  +F  +Q  DVV WNAMI G A +G G++AL LF +M D+G  P+  TFV 
Sbjct: 265 KCGCMNEAWWVFDGVQSHDVVLWNAMIGGLAMNGHGKRALELFRRMLDKGFVPNESTFVV 324

Query: 279 LLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 338
            L AC H G VD G   F SM  D+GI  + +HY C+ DLLGRAG L EA  ++  MP +
Sbjct: 325 ALCACIHTGRVDEGEDVFRSM-RDHGIEPRREHYGCLADLLGRAGLLEEAEGVLLDMPME 383

Query: 339 PQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARI 398
           P  + +G L+S+C +H  + + E     L  L P +  G YV L N+YA    W+D   +
Sbjct: 384 PHASQWGALMSSCLMHNNVGVGERVGKKLIELEPDDG-GRYVALFNLYAVNGLWEDAKAL 442

Query: 399 RLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDL 458
           R  M+E    K  G S+IE   +VHEFRSGD  HP+   I+  L+++E+R++L GYV D 
Sbjct: 443 RKMMEERGAKKETGLSFIEWNGLVHEFRSGDTRHPQTRLIYALLEDMEQRLQLIGYVKDT 502

Query: 459 -EFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISA 517
            +  L    EE K   L +HSE+LA+AFG++ +P   PIR+ KNLRVC DCH   K +S 
Sbjct: 503 SQVLLDMDNEEDKGNTLSYHSERLALAFGILNIPHDMPIRIVKNLRVCRDCHVHAKLVSK 562

Query: 518 IEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           + +REIIVRD  RFH F+DG CSC D+W
Sbjct: 563 LYQREIIVRDRHRFHLFRDGVCSCNDFW 590



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 40/126 (31%), Positives = 72/126 (57%), Gaps = 4/126 (3%)

Query: 206 DTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMK 265
           D  +   ++S Y KCGDLE A ++F+ +  + +V+W+AMI    + G+  +ALR+FD+M 
Sbjct: 148 DVVSWNTMVSGYGKCGDLEAAREVFVRMPERGLVSWSAMIDACVRTGEFSEALRVFDQMT 207

Query: 266 DEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY---TCMVDLLGRA 322
             G KPD++  V++L  C H G ++ G ++    +    +  +P +    T +VD+  + 
Sbjct: 208 GNGFKPDAVVLVSVLKTCAHLGALERG-RWVHRFLKAERLGGRPGNVMLETALVDMYCKC 266

Query: 323 GKLVEA 328
           G + EA
Sbjct: 267 GCMNEA 272


>gi|357119982|ref|XP_003561711.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g50990-like [Brachypodium distachyon]
          Length = 555

 Score =  366 bits (939), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 200/516 (38%), Positives = 293/516 (56%), Gaps = 16/516 (3%)

Query: 36  PDVVSYNIMLSCILLNSDDVVAAFDFFQRLP----IKDTASWNTMISGFVQKKNMAKARD 91
           PD  +Y I+L   L  SD + AA     RL     +++      ++  ++    M +AR+
Sbjct: 50  PDYRTYGILLRACLKYSD-IYAAMQIHSRLTKVGLLRNQHIIAPLLRLYIDYDCMTEARE 108

Query: 92  LFLAMPEKNSVSWSA--MISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVE 149
           LF  M E ++  +    M++G+++ GQLDKA ++FK  PVK VV+W +MI+G      V 
Sbjct: 109 LFWLMLEWSTDPFHGNLMLTGFLKGGQLDKAYQIFKRMPVKDVVSWNSMIAGA-----VR 163

Query: 150 NSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTA 209
           +S  +D + L   ++  G+ P+  S SSVL  C+   +L  G  VH+L+ +  + K+   
Sbjct: 164 SSHLKDAMILFSRLVNSGLVPDGFSFSSVLSACARAGALFYGVWVHRLMAELGVEKNNIL 223

Query: 210 LTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGM 269
           ++ L+ MY KCG ++ + ++F  ++R  V  WN MI   A HG G+  + LF +M+  G+
Sbjct: 224 ISALVDMYAKCGRIDVSVEIFNTVKRNHVPMWNTMIGSLAAHGLGQDVVVLFHRMEHAGV 283

Query: 270 KPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAV 329
            PD +TFVALL AC+H G+V+   QYF++M   Y I  K +HY  MVD L RAG L EA 
Sbjct: 284 VPDGVTFVALLTACSHCGMVEEARQYFEAMTTKYYITPKVEHYGAMVDTLSRAGLLDEAY 343

Query: 330 DLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAM 389
           +L++ M  KP   I+  LLSACR H +  L E     +        +G Y  L+NIY+++
Sbjct: 344 NLVRSMVVKPDAVIWRALLSACRRHHQTKLGEITIEQMV----CQGSGDYTLLSNIYSSI 399

Query: 390 KKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRM 449
            +W D   +    K+  V K  G SW+E+G   HEF++GDR HP+   I+  L  L K+ 
Sbjct: 400 NRWVDSENVWKERKKKKVRKNKGLSWVELGGSTHEFKAGDRSHPDTDDIYRVLHGLSKKA 459

Query: 450 KLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCH 509
           K  GY P  E  +  V  E +E+ L FHSEKLA+A+ ++K   GT I V KNL+ CGDCH
Sbjct: 460 KAEGYSPSTELVMKDVSHEEREENLTFHSEKLAVAYSVLKTGPGTEIMVSKNLQTCGDCH 519

Query: 510 RATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
              K IS +  R II+RD  RFH F+ G CSC DYW
Sbjct: 520 EWIKIISKVLCRVIIMRDRARFHRFESGCCSCKDYW 555



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 68/275 (24%), Positives = 124/275 (45%), Gaps = 29/275 (10%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP--- 66
           N +L GF K  G+L  A ++F ++P  DVVS+N M++   + S  +  A   F RL    
Sbjct: 124 NLMLTGFLKG-GQLDKAYQIFKRMPVKDVVSWNSMIAGA-VRSSHLKDAMILFSRLVNSG 181

Query: 67  -IKDTASWNTMISGFVQKKNMAKARDLFLAM----------PEKNSVSWSAMISGYIECG 115
            + D  S+++++S        A+A  LF  +           EKN++  SA++  Y +CG
Sbjct: 182 LVPDGFSFSSVLSA------CARAGALFYGVWVHRLMAELGVEKNNILISALVDMYAKCG 235

Query: 116 QLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSL 175
           ++D +VE+F       V  W  MI      G       +D + L   M   G+ P+  + 
Sbjct: 236 RIDVSVEIFNTVKRNHVPMWNTMIGSLAAHGL-----GQDVVVLFHRMEHAGVVPDGVTF 290

Query: 176 SSVLLGCSHLSSLQLGKQVHQ-LVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLE-I 233
            ++L  CSH   ++  +Q  + +  K  +         ++    + G L++A  L    +
Sbjct: 291 VALLTACSHCGMVEEARQYFEAMTTKYYITPKVEHYGAMVDTLSRAGLLDEAYNLVRSMV 350

Query: 234 QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEG 268
            + D V W A++S   +H + +      ++M  +G
Sbjct: 351 VKPDAVIWRALLSACRRHHQTKLGEITIEQMVCQG 385


>gi|28876027|gb|AAO60036.1| hypothetical protein [Oryza sativa Japonica Group]
          Length = 704

 Score =  366 bits (939), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 199/546 (36%), Positives = 300/546 (54%), Gaps = 46/546 (8%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G L  A+ELF++IP+ +V+S+NI+    + N D +  A   F  +P ++ A+WN M++G 
Sbjct: 156 GDLTAARELFERIPRRNVMSWNILFGGYIKNGD-LGGARKLFDEMPERNVATWNAMVAGL 214

Query: 81  VQKKNMAKARDLFLAMP---------------------------------------EKNS 101
                  ++   FL M                                        +++ 
Sbjct: 215 TNLGFDEESLGFFLDMRREGMHPDEFGLGSVFRCCAGLRDVVTGRQVHAYVVRSGLDRDM 274

Query: 102 VSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLR 161
              S++   Y+ CG L +   + ++ P  S+V+   +I+G       +N  +E  L+   
Sbjct: 275 CVGSSLAHMYMRCGCLQEGEAVLRMLPSLSIVSCNTIIAGR-----TQNGDSEGALEYFC 329

Query: 162 MMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCG 221
           MM  +G+  +  +  S +  CS L++L  G+Q+H  V K+ + K    +T L+ MY +CG
Sbjct: 330 MMRSVGVAADVVTFVSAISSCSDLAALAQGQQIHGQVMKAGVDKVVPVMTCLVHMYSRCG 389

Query: 222 DLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLL 281
            L D+ ++F      D    +AMIS Y  HG G+KA+ LF +M + G +P  +TF+ALL 
Sbjct: 390 CLGDSERVFFGYCGSDTFLLSAMISAYGFHGHGQKAIELFKQMMNGGAEPSDVTFLALLY 449

Query: 282 ACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQP 341
           AC+H+GL + G+  F+ M   YG+     HYTC+VDLLGR+G L EA  LI  MP  P  
Sbjct: 450 ACSHSGLKEEGMDCFELMTKTYGMQPSVKHYTCVVDLLGRSGCLDEAEALILSMPLTPDG 509

Query: 342 AIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLS 401
            I+ TLLSAC+  K  D+AE  A  +  L+P ++A  YV L+NI A  ++W DV+ +R +
Sbjct: 510 VIWKTLLSACKTQKNFDMAERIAKRVIELDPHDSAS-YVLLSNIRATSRRWGDVSEVRKA 568

Query: 402 MKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFA 461
           M++NNV K PG SW+E+   +H+F +GD  HP    I E L+E+  +++  GY PD+   
Sbjct: 569 MRDNNVRKEPGVSWVELKGHIHQFCTGDESHPRQKEIDECLEEMMAKIRQCGYSPDMSMV 628

Query: 462 LHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKR 521
           LH + +E KE  L  HSEKLAIAF  + +P G PIRV KNLRVC DCH A K +S +  R
Sbjct: 629 LHDMEDEEKEVSLSHHSEKLAIAFAFLSLPEGVPIRVMKNLRVCDDCHLAIKLMSQVTGR 688

Query: 522 EIIVRD 527
           EI+VRD
Sbjct: 689 EIVVRD 694



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 77/257 (29%), Positives = 125/257 (48%), Gaps = 6/257 (2%)

Query: 69  DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAP 128
           D  + N ++  +    ++  AR+LF  +P +N +SW+ +  GYI+ G L  A +LF   P
Sbjct: 141 DRFTANHLMLAYADLGDLTAARELFERIPRRNVMSWNILFGGYIKNGDLGGARKLFDEMP 200

Query: 129 VKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSL 188
            ++V  W AM++G    G+ E S     L     M   G+ P+   L SV   C+ L  +
Sbjct: 201 ERNVATWNAMVAGLTNLGFDEES-----LGFFLDMRREGMHPDEFGLGSVFRCCAGLRDV 255

Query: 189 QLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGY 248
             G+QVH  V +S L +D    + L  MY +CG L++   +   +    +V+ N +I+G 
Sbjct: 256 VTGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGCLQEGEAVLRMLPSLSIVSCNTIIAGR 315

Query: 249 AQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK 308
            Q+G  E AL  F  M+  G+  D +TFV+ + +C+    +  G Q     V   G+   
Sbjct: 316 TQNGDSEGALEYFCMMRSVGVAADVVTFVSAISSCSDLAALAQG-QQIHGQVMKAGVDKV 374

Query: 309 PDHYTCMVDLLGRAGKL 325
               TC+V +  R G L
Sbjct: 375 VPVMTCLVHMYSRCGCL 391



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 75/197 (38%), Gaps = 43/197 (21%)

Query: 175 LSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ 234
            S +   C  L  L   +Q+H     S    D      L+  Y   GDL  A +LF  I 
Sbjct: 113 FSHLFRACRALRPL---RQLHAFAATSGAATDRFTANHLMLAYADLGDLTAARELFERIP 169

Query: 235 RKDVVTWNAMISGYAQHGKGEKALRLFDK------------------------------- 263
           R++V++WN +  GY ++G    A +LFD+                               
Sbjct: 170 RRNVMSWNILFGGYIKNGDLGGARKLFDEMPERNVATWNAMVAGLTNLGFDEESLGFFLD 229

Query: 264 MKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLG--- 320
           M+ EGM PD     ++   C  AGL D+        V+ Y + +  D   C+   L    
Sbjct: 230 MRREGMHPDEFGLGSVFRCC--AGLRDV---VTGRQVHAYVVRSGLDRDMCVGSSLAHMY 284

Query: 321 -RAGKLVEAVDLIKKMP 336
            R G L E   +++ +P
Sbjct: 285 MRCGCLQEGEAVLRMLP 301



 Score = 44.3 bits (103), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 61/284 (21%), Positives = 118/284 (41%), Gaps = 25/284 (8%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP--- 66
            S LA    + G L++ + +   +P   +VS N +++    N D    A ++F  +    
Sbjct: 277 GSSLAHMYMRCGCLQEGEAVLRMLPSLSIVSCNTIIAGRTQNGDS-EGALEYFCMMRSVG 335

Query: 67  -IKDTASWNTMISGFVQKKNMAKARDL----FLAMPEKNSVSWSAMISGYIECGQLDKAV 121
              D  ++ + IS       +A+ + +      A  +K     + ++  Y  CG L  + 
Sbjct: 336 VAADVVTFVSAISSCSDLAALAQGQQIHGQVMKAGVDKVVPVMTCLVHMYSRCGCLGDSE 395

Query: 122 ELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLG 181
            +F           +AMIS Y   G+      +  ++L + M+  G  P+  +  ++L  
Sbjct: 396 RVFFGYCGSDTFLLSAMISAYGFHGH-----GQKAIELFKQMMNGGAEPSDVTFLALLYA 450

Query: 182 CSHLSSLQLGKQVHQLVFKS----PLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ-RK 236
           CSH    + G    +L+ K+    P  K  T +  L+    + G L++A  L L +    
Sbjct: 451 CSHSGLKEEGMDCFELMTKTYGMQPSVKHYTCVVDLLG---RSGCLDEAEALILSMPLTP 507

Query: 237 DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKP-DSITFVAL 279
           D V W  ++S        + A R+  ++ +  + P DS ++V L
Sbjct: 508 DGVIWKTLLSACKTQKNFDMAERIAKRVIE--LDPHDSASYVLL 549


>gi|297737063|emb|CBI26264.3| unnamed protein product [Vitis vinifera]
          Length = 583

 Score =  366 bits (939), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 202/551 (36%), Positives = 298/551 (54%), Gaps = 47/551 (8%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQ 63
           ++ V W +++AG + Q G+   A   F  + +  +   +    C    S  + +     Q
Sbjct: 71  RSVVTWTALIAG-SVQNGRFTSALFHFSNMRRDSIQPNDFTFPCAFKASGSLRSPLVGKQ 129

Query: 64  -------RLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQ 116
                     I D     +    + +     +AR +F  MPE+N  +W+A +S  +  G+
Sbjct: 130 VHALAVKAGQISDVFVGCSAFDMYSKAGLTEEARKMFDEMPERNIATWNAYLSNSVLEGR 189

Query: 117 LDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLS 176
            D A+              TA I    +                      GI P    +S
Sbjct: 190 YDDAL--------------TAFIEARKE----------------------GIEPTDFMVS 213

Query: 177 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK 236
           SVL  C+ LS L++GK VH L  K+ +  +    + L+ MY KCG +EDA + F E+  +
Sbjct: 214 SVLSACAGLSVLEVGKSVHTLAVKACVVGNIFVGSALVDMYGKCGSIEDAERAFDEMPER 273

Query: 237 DVVTWNAMISGYAQHGKGEKALRLFDKMK--DEGMKPDSITFVALLLACNHAGLVDLGIQ 294
           ++VTWNAMI GYA  G+ + A+ LFD+M      + P+ +TFV +L AC+ AG V++G++
Sbjct: 274 NLVTWNAMIGGYAHQGQADMAVTLFDEMTCGSHRVAPNYVTFVCVLSACSRAGSVNVGME 333

Query: 295 YFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVH 354
            F+SM   YGI    +HY C+VDLLGRAG + +A   IKKMP +P  +++G LL A ++ 
Sbjct: 334 IFESMRGRYGIEPGAEHYACVVDLLGRAGMVEQAYQFIKKMPIRPTVSVWGALLGASKMF 393

Query: 355 KRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYS 414
            + +L + AA NLF L+P ++ G +V L+N++AA  +W++   +R  MK+  + K  G S
Sbjct: 394 GKSELGKVAADNLFELDPLDS-GNHVLLSNMFAAAGRWEEATLVRKEMKDVGIKKGAGCS 452

Query: 415 WIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLL 474
           WI  G  VH F++ D  H     I   L +L   M+ AGY+PD  FAL  + EE K   +
Sbjct: 453 WITAGNAVHVFQAKDTSHERNSEIQAMLAKLRGEMEAAGYIPDTSFALFDLEEEEKAMEV 512

Query: 475 LFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHF 534
            +HSEK+A+AFGLI +P G PIR+ KNLR+CGDCH A K+IS I  REIIVRD   FH F
Sbjct: 513 WYHSEKIALAFGLISIPAGVPIRITKNLRICGDCHSAIKFISGIVGREIIVRDNNLFHRF 572

Query: 535 KDGTCSCGDYW 545
           +D  CSC DYW
Sbjct: 573 RDNQCSCRDYW 583



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 109/236 (46%), Gaps = 6/236 (2%)

Query: 101 SVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLL 160
           S  ++ +++ Y +  + + A  L  + P +SVV WTA+I+G      V+N      L   
Sbjct: 42  SFIYNHLVNMYSKLDRPNSAQLLLSLTPNRSVVTWTALIAGS-----VQNGRFTSALFHF 96

Query: 161 RMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKC 220
             M    I+PN  +          L S  +GKQVH L  K+    D         MY K 
Sbjct: 97  SNMRRDSIQPNDFTFPCAFKASGSLRSPLVGKQVHALAVKAGQISDVFVGCSAFDMYSKA 156

Query: 221 GDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 280
           G  E+A K+F E+  +++ TWNA +S     G+ + AL  F + + EG++P      ++L
Sbjct: 157 GLTEEARKMFDEMPERNIATWNAYLSNSVLEGRYDDALTAFIEARKEGIEPTDFMVSSVL 216

Query: 281 LACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 336
            AC    ++++G +   ++     +       + +VD+ G+ G + +A     +MP
Sbjct: 217 SACAGLSVLEVG-KSVHTLAVKACVVGNIFVGSALVDMYGKCGSIEDAERAFDEMP 271


>gi|356574473|ref|XP_003555371.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Glycine max]
          Length = 923

 Score =  365 bits (938), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 197/546 (36%), Positives = 310/546 (56%), Gaps = 33/546 (6%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M+ K  ++W +++AG+A+    L +A  LF K+ Q   +  + M+   +L +   + + +
Sbjct: 410 MHEKDLISWTTIIAGYAQNECHL-EAINLFRKV-QVKGMDVDPMMIGSVLRACSGLKSRN 467

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
           F +             I G+V K+++A   D+ L          +A+++ Y E G  D A
Sbjct: 468 FIRE------------IHGYVFKRDLA---DIMLQ---------NAIVNVYGEVGHRDYA 503

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLL 180
              F+    K +V+WT+MI+       V N    + L+L   +    I+P++ ++ S L 
Sbjct: 504 RRAFESIRSKDIVSWTSMITCC-----VHNGLPVEALELFYSLKQTNIQPDSIAIISALS 558

Query: 181 GCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVT 240
             ++LSSL+ GK++H  + +     +    + L+ MY  CG +E++ K+F  ++++D++ 
Sbjct: 559 ATANLSSLKKGKEIHGFLIRKGFFLEGPIASSLVDMYACCGTVENSRKMFHSVKQRDLIL 618

Query: 241 WNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV 300
           W +MI+    HG G +A+ LF KM DE + PD ITF+ALL AC+H+GL+  G ++F+ M 
Sbjct: 619 WTSMINANGMHGCGNEAIALFKKMTDENVIPDHITFLALLYACSHSGLMVEGKRFFEIMK 678

Query: 301 NDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLA 360
             Y +   P+HY CMVDLL R+  L EA   ++ MP KP   ++  LL AC +H   +L 
Sbjct: 679 YGYQLEPWPEHYACMVDLLSRSNSLEEAYQFVRSMPIKPSSEVWCALLGACHIHSNKELG 738

Query: 361 EFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGT 420
           E AA  L   +  N +G Y  ++NI+AA  +W+DV  +RL MK N + K PG SWIEV  
Sbjct: 739 ELAAKELLQSDTKN-SGKYALISNIFAADGRWNDVEEVRLRMKGNGLKKNPGCSWIEVDN 797

Query: 421 VVHEFRSGDRVHPELVSIHEKLKELEKRM-KLAGYVPDLEFALHAVGEEVKEQLLLFHSE 479
            +H F + D+ HP+   I+ KL +  K + K  GY+   +F  H V EE K Q+L  HSE
Sbjct: 798 KIHTFMARDKSHPQTDDIYLKLAQFTKLLGKKGGYIAQTKFVFHNVSEEEKTQMLYRHSE 857

Query: 480 KLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTC 539
           +LA+ +GL+  P GT IR+ KNLR+C DCH   K  S + +R ++VRD  RFHHF+ G C
Sbjct: 858 RLALGYGLLVTPKGTSIRITKNLRICDDCHTFFKIASEVSQRALVVRDANRFHHFERGLC 917

Query: 540 SCGDYW 545
           SCGD+W
Sbjct: 918 SCGDFW 923



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 72/249 (28%), Positives = 125/249 (50%), Gaps = 23/249 (9%)

Query: 111 YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFG-YVENSWAEDGLKLLRMMIGLGIR 169
           Y +CG L  AV++F     +++  W AM+  ++  G Y+E       ++L + M  LG+ 
Sbjct: 89  YEKCGSLKDAVKVFDEMTERTIFTWNAMMGAFVSSGKYLE------AIELYKEMRVLGVA 142

Query: 170 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 229
            +A +  SVL  C  L   +LG ++H +  K    +       LI+MY KCGDL  A  L
Sbjct: 143 IDACTFPSVLKACGALGESRLGAEIHGVAVKCGFGEFVFVCNALIAMYGKCGDLGGARVL 202

Query: 230 F--LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG 287
           F  + ++++D V+WN++IS +   GK  +AL LF +M++ G+  ++ TFVA L       
Sbjct: 203 FDGIMMEKEDTVSWNSIISAHVTEGKCLEALSLFRRMQEVGVASNTYTFVAALQGVEDPS 262

Query: 288 LVDLGIQYFDSMVNDYGIAAKPDHY------TCMVDLLGRAGKLVEAVDLIKKMPFKPQP 341
            V LG+         +G A K +H+        ++ +  + G++ +A  +   M  +   
Sbjct: 263 FVKLGMGI-------HGAALKSNHFADVYVANALIAMYAKCGRMEDAERVFASMLCRDYV 315

Query: 342 AIFGTLLSA 350
           + + TLLS 
Sbjct: 316 S-WNTLLSG 323



 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 89/374 (23%), Positives = 170/374 (45%), Gaps = 49/374 (13%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK----DTASWNTM 76
           G LKDA ++FD++ +  + ++N M+    ++S   + A + ++ + +     D  ++ ++
Sbjct: 93  GSLKDAVKVFDEMTERTIFTWNAMMGA-FVSSGKYLEAIELYKEMRVLGVAIDACTFPSV 151

Query: 77  I---SGFVQKKNMAKARDLFLAMPEKNSV-SWSAMISGYIECGQLDKAVELFK--VAPVK 130
           +       + +  A+   + +       V   +A+I+ Y +CG L  A  LF   +   +
Sbjct: 152 LKACGALGESRLGAEIHGVAVKCGFGEFVFVCNALIAMYGKCGDLGGARVLFDGIMMEKE 211

Query: 131 SVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQL 190
             V+W ++IS ++  G        + L L R M  +G+  N  +  + L G    S ++L
Sbjct: 212 DTVSWNSIISAHVTEGK-----CLEALSLFRRMQEVGVASNTYTFVAALQGVEDPSFVKL 266

Query: 191 GKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQ 250
           G  +H    KS    D      LI+MY KCG +EDA ++F  +  +D V+WN ++SG  Q
Sbjct: 267 GMGIHGAALKSNHFADVYVANALIAMYAKCGRMEDAERVFASMLCRDYVSWNTLLSGLVQ 326

Query: 251 HGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGL---------------VDLGIQY 295
           +     AL  F  M++   KPD ++ + L+ A   +G                +D  +Q 
Sbjct: 327 NELYRDALNYFRDMQNSAQKPDQVSVLNLIAASGRSGNLLNGKEVHAYAIRNGLDSNMQI 386

Query: 296 FDSMVNDYGIAAKPDH----YTCM--VDLLGRAGKL---------VEAVDLIKKMPFKP- 339
            +++++ Y       H    + CM   DL+     +         +EA++L +K+  K  
Sbjct: 387 GNTLIDMYAKCCCVKHMGYAFECMHEKDLISWTTIIAGYAQNECHLEAINLFRKVQVKGM 446

Query: 340 --QPAIFGTLLSAC 351
              P + G++L AC
Sbjct: 447 DVDPMMIGSVLRAC 460



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 94/384 (24%), Positives = 165/384 (42%), Gaps = 66/384 (17%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M  + TV+WNS+++    + GK  +A  LF ++ +  V S          N+   VAA  
Sbjct: 208 MEKEDTVSWNSIISAHVTE-GKCLEALSLFRRMQEVGVAS----------NTYTFVAAL- 255

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
             Q +           I G   K N     D+++A         +A+I+ Y +CG+++ A
Sbjct: 256 --QGVEDPSFVKLGMGIHGAALKSN--HFADVYVA---------NALIAMYAKCGRMEDA 302

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLL 180
             +F     +  V+W  ++SG      V+N    D L   R M     +P+  S+ +++ 
Sbjct: 303 ERVFASMLCRDYVSWNTLLSGL-----VQNELYRDALNYFRDMQNSAQKPDQVSVLNLIA 357

Query: 181 GCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVT 240
                 +L  GK+VH    ++ L  +      LI MY KC  ++     F  +  KD+++
Sbjct: 358 ASGRSGNLLNGKEVHAYAIRNGLDSNMQIGNTLIDMYAKCCCVKHMGYAFECMHEKDLIS 417

Query: 241 WNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN---------------- 284
           W  +I+GYAQ+    +A+ LF K++ +GM  D +   ++L AC+                
Sbjct: 418 WTTIIAGYAQNECHLEAINLFRKVQVKGMDVDPMMIGSVLRACSGLKSRNFIREIHGYVF 477

Query: 285 HAGLVDLGIQYFDSMVNDYGIAAKPDH---------------YTCMVDLLGRAGKLVEAV 329
              L D+ +Q  +++VN YG     D+               +T M+      G  VEA+
Sbjct: 478 KRDLADIMLQ--NAIVNVYGEVGHRDYARRAFESIRSKDIVSWTSMITCCVHNGLPVEAL 535

Query: 330 DL---IKKMPFKPQPAIFGTLLSA 350
           +L   +K+   +P      + LSA
Sbjct: 536 ELFYSLKQTNIQPDSIAIISALSA 559



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 41/113 (36%), Positives = 64/113 (56%), Gaps = 2/113 (1%)

Query: 182 CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTW 241
           C  + +L  G+Q+H  + KS L       T L+ MY KCG L+DA K+F E+  + + TW
Sbjct: 56  CVAVKALPQGQQLHARLLKSHL--SAFLATKLLHMYEKCGSLKDAVKVFDEMTERTIFTW 113

Query: 242 NAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ 294
           NAM+  +   GK  +A+ L+ +M+  G+  D+ TF ++L AC   G   LG +
Sbjct: 114 NAMMGAFVSSGKYLEAIELYKEMRVLGVAIDACTFPSVLKACGALGESRLGAE 166


>gi|242089043|ref|XP_002440354.1| hypothetical protein SORBIDRAFT_09g030130 [Sorghum bicolor]
 gi|241945639|gb|EES18784.1| hypothetical protein SORBIDRAFT_09g030130 [Sorghum bicolor]
          Length = 866

 Score =  365 bits (938), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 191/493 (38%), Positives = 290/493 (58%), Gaps = 15/493 (3%)

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMISGYIECGQL 117
           F  L +++  +WN++++G+        A DL   M     + +  +W+ +I+GY   G+ 
Sbjct: 380 FDTLELRNITTWNSLVAGYANAGQFDHALDLVEEMKRNRLDPDVTTWNGLINGYSVNGKS 439

Query: 118 DKAVELFK----VAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNAS 173
            +AV L +    +    +VV+WT++ISG    G  E+S+          M    ++P+  
Sbjct: 440 SQAVLLLRQIKAIGLTPNVVSWTSLISGSCNNGDYEDSF-----YFFNEMQKDHVQPSVV 494

Query: 174 SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI 233
           ++S +L  C+ L+ L+ GK++H    +    +D    T LI MY K G+L  A ++F  I
Sbjct: 495 TMSVLLRACAGLALLKKGKELHCFALRRAYDRDMVVGTALIDMYSKSGNLASAQRIFERI 554

Query: 234 QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGI 293
           Q  ++V+ NAM++G A HG+G +A+ LF  M + G+KPDSITF ALL AC    LV  G 
Sbjct: 555 QENNLVSSNAMLTGLAAHGQGHEAIALFHDMCNSGLKPDSITFTALLTACRSMDLVTEGW 614

Query: 294 QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRV 353
           +YFD+M + YG+    ++Y CMVDLL R G L EA+D I K PFK   +++G LL+ C +
Sbjct: 615 EYFDTMESRYGVTPTVENYACMVDLLARCGYLDEAMDFINKSPFKSVSSLWGALLTGCTL 674

Query: 354 HKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGY 413
           H  L LAE AA  LF L P N+A  Y+Q+ ++Y   + +D+   ++ +MK   +   PG+
Sbjct: 675 HGNLALAEAAARKLFKLEPYNSAN-YLQMVSLYEHEQMFDEAESLKYAMKARALDTRPGW 733

Query: 414 SWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQL 473
           SWI++   +H F    + HP+   I+E+L  L  +++ +GYVPD    ++ V EE KE+L
Sbjct: 734 SWIQIEQSIHVFEVEGKPHPDTAEIYEELIRLVFQIRKSGYVPDTSCIVYNVPEEEKEKL 793

Query: 474 LLFHSEKLAIAFGLIKVPLG-TPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFH 532
           LL H+EKLAI +GLI       PIRV KN R+C DCH   K+ISA+  R+II+RD  RFH
Sbjct: 794 LLSHTEKLAITYGLIHSDASRVPIRVIKNTRMCNDCHELAKHISALCARQIILRDADRFH 853

Query: 533 HFKDGTCSCGDYW 545
           +F DG CSC + W
Sbjct: 854 YFTDGKCSCNNCW 866



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 58/210 (27%), Positives = 111/210 (52%), Gaps = 17/210 (8%)

Query: 80  FVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVEL---------FKVAPVK 130
           + +  ++  AR + L   +   V+W+ +++     G +D A++L          ++ P  
Sbjct: 229 YAESADVGAARRV-LETEDAPPVAWNVVVACCARLGLVDDALDLAERMARSGRLELEP-- 285

Query: 131 SVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQL 190
           S+  W A++SG  +     N    +   ++R+M+  G++P++SS+SS+L   + L  L  
Sbjct: 286 SLATWNAVLSGCAR-----NGRDREAFGVVRIMLDQGLQPDSSSMSSLLKSVASLGLLAH 340

Query: 191 GKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQ 250
           G + H    ++ L  D    T  + MY KCG LE A K+F  ++ +++ TWN++++GYA 
Sbjct: 341 GMEAHGFFLRNQLEPDVYTGTAFVDMYAKCGHLEYAQKVFDTLELRNITTWNSLVAGYAN 400

Query: 251 HGKGEKALRLFDKMKDEGMKPDSITFVALL 280
            G+ + AL L ++MK   + PD  T+  L+
Sbjct: 401 AGQFDHALDLVEEMKRNRLDPDVTTWNGLI 430



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 62/322 (19%), Positives = 125/322 (38%), Gaps = 69/322 (21%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQ----PDVVSYNIMLSCILLNSDDVV 56
           + ++    WNS++AG+A   G+   A +L +++ +    PDV ++N +++   +N     
Sbjct: 383 LELRNITTWNSLVAGYANA-GQFDHALDLVEEMKRNRLDPDVTTWNGLINGYSVNGKSSQ 441

Query: 57  AAFDFFQRLPI---KDTASWNTMISGFVQKKNMAKARDLFLAMP---------------- 97
           A     Q   I    +  SW ++ISG     +   +   F  M                 
Sbjct: 442 AVLLLRQIKAIGLTPNVVSWTSLISGSCNNGDYEDSFYFFNEMQKDHVQPSVVTMSVLLR 501

Query: 98  -----------------------EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVA 134
                                  +++ V  +A+I  Y + G L  A  +F+     ++V+
Sbjct: 502 ACAGLALLKKGKELHCFALRRAYDRDMVVGTALIDMYSKSGNLASAQRIFERIQENNLVS 561

Query: 135 WTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQV 194
             AM++G    G        + + L   M   G++P++ + +++L  C  +  +  G + 
Sbjct: 562 SNAMLTGLAAHGQ-----GHEAIALFHDMCNSGLKPDSITFTALLTACRSMDLVTEGWEY 616

Query: 195 HQLVFKSPLCKDTTALTPLISMY-------CKCGDLEDACKLFLEIQRKDVVT-WNAMIS 246
              +      +    +TP +  Y        +CG L++A     +   K V + W A+++
Sbjct: 617 FDTM------ESRYGVTPTVENYACMVDLLARCGYLDEAMDFINKSPFKSVSSLWGALLT 670

Query: 247 GYAQHGK---GEKALRLFDKMK 265
           G   HG     E A R   K++
Sbjct: 671 GCTLHGNLALAEAAARKLFKLE 692



 Score = 42.0 bits (97), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 34/135 (25%), Positives = 66/135 (48%), Gaps = 12/135 (8%)

Query: 213 LISMYCKCGDLEDACKLFLEIQRK-------DVVTWNAMISGYAQHGKGEKALRLFDKMK 265
           +++   + G ++DA  L   + R         + TWNA++SG A++G+  +A  +   M 
Sbjct: 255 VVACCARLGLVDDALDLAERMARSGRLELEPSLATWNAVLSGCARNGRDREAFGVVRIML 314

Query: 266 DEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY--TCMVDLLGRAG 323
           D+G++PDS +  +LL +    GL+  G++     + +     +PD Y  T  VD+  + G
Sbjct: 315 DQGLQPDSSSMSSLLKSVASLGLLAHGMEAHGFFLRNQ---LEPDVYTGTAFVDMYAKCG 371

Query: 324 KLVEAVDLIKKMPFK 338
            L  A  +   +  +
Sbjct: 372 HLEYAQKVFDTLELR 386


>gi|357502521|ref|XP_003621549.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87241485|gb|ABD33343.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355496564|gb|AES77767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 654

 Score =  365 bits (938), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 182/443 (41%), Positives = 274/443 (61%), Gaps = 8/443 (1%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI 164
           + ++  Y   G +  A  +F   P K++V+W+AMI+ Y K     N      L+L ++M+
Sbjct: 218 TTLLDVYARFGYVSYASSVFGAMPDKNIVSWSAMIACYAK-----NEMPMKALELFQIMM 272

Query: 165 --GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGD 222
                  PN  ++ SVL  C+ L++L+ GK VH  V +  L      L  LI+MY +CG+
Sbjct: 273 LEACDTVPNPITMVSVLQACASLAALEHGKLVHAYVLRRGLDSTLPVLNTLITMYGRCGE 332

Query: 223 LEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA 282
           +    ++F  ++++DV++WN++IS Y  HG G+KA+++F+ M + G+ P  ITF+ +L A
Sbjct: 333 ISTGQRVFDYMKKRDVISWNSLISIYGMHGLGKKAIQIFENMINRGVSPSYITFITVLCA 392

Query: 283 CNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPA 342
           C+HAGLV+     F+SM+N Y I  + +HY CMVD+LGRA +L EA++LI+ M FKP P 
Sbjct: 393 CSHAGLVEEAKILFESMLNKYRIHPRMEHYACMVDILGRANRLDEAIELIQNMDFKPGPT 452

Query: 343 IFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSM 402
           ++G+LL +CR+H  ++LAE A+  LF L P N AG YV L++IYA  + W+DV R+R  +
Sbjct: 453 VWGSLLGSCRIHCNVELAERASAMLFELEPKN-AGNYVLLSHIYAKSRMWNDVRRVRKQL 511

Query: 403 KENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFAL 462
           +   + K+P  SWIEV   ++   S +  +P++  +   L  L   +K  GYVP      
Sbjct: 512 ESRGLQKIPSCSWIEVKRKIYSLVSIEEYNPQIEELCAFLITLLTEIKNQGYVPQTNVVT 571

Query: 463 HAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKRE 522
           + + EE KE+++L HS KLA+AFGLI    G  IR+  NLR+C DCH   K++S    RE
Sbjct: 572 YDLDEEEKERIVLGHSGKLAVAFGLINTSKGEIIRISNNLRLCEDCHAFMKFVSKFTNRE 631

Query: 523 IIVRDTTRFHHFKDGTCSCGDYW 545
           I++RD  RFH FKDG CSCGDYW
Sbjct: 632 ILLRDVNRFHCFKDGVCSCGDYW 654



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 83/312 (26%), Positives = 138/312 (44%), Gaps = 42/312 (13%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIML-SCILLNSDDVVAAFDFFQRLPIKDTASWNTMISG 79
           G LK A +L    P P   ++ +++ SCI  NS  +    D   RL          + SG
Sbjct: 57  GNLKQAVQLLCCEPNPTKKTFELLINSCIEQNS--LSDGVDVHHRL----------VGSG 104

Query: 80  FVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMI 139
             Q        D +LA         + +I+ Y + G +D A ++F     K++  W A+ 
Sbjct: 105 LDQ--------DPYLA---------TKLINMYCDLGSVDHACKVFDETREKTIFVWNAIF 147

Query: 140 SGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGC--SHLS--SLQLGKQVH 195
                      S  ED L L   M  +GI  N  + + VL  C  S LS   L+ GK++H
Sbjct: 148 RAL-----AMASRGEDLLVLYGQMNWIGIPSNRFTYTYVLKACVVSELSICPLRKGKEIH 202

Query: 196 QLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGE 255
             + +         +T L+ +Y + G +  A  +F  +  K++V+W+AMI+ YA++    
Sbjct: 203 AHILRHGYEGHVHVMTTLLDVYARFGYVSYASSVFGAMPDKNIVSWSAMIACYAKNEMPM 262

Query: 256 KALRLFDKMKDEGMK--PDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYT 313
           KAL LF  M  E     P+ IT V++L AC     ++ G +   + V   G+ +      
Sbjct: 263 KALELFQIMMLEACDTVPNPITMVSVLQACASLAALEHG-KLVHAYVLRRGLDSTLPVLN 321

Query: 314 CMVDLLGRAGKL 325
            ++ + GR G++
Sbjct: 322 TLITMYGRCGEI 333



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 78/172 (45%), Gaps = 3/172 (1%)

Query: 170 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 229
           P   +   ++  C   +SL  G  VH  +  S L +D    T LI+MYC  G ++ ACK+
Sbjct: 72  PTKKTFELLINSCIEQNSLSDGVDVHHRLVGSGLDQDPYLATKLINMYCDLGSVDHACKV 131

Query: 230 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLV 289
           F E + K +  WNA+    A   +GE  L L+ +M   G+  +  T+  +L AC  + L 
Sbjct: 132 FDETREKTIFVWNAIFRALAMASRGEDLLVLYGQMNWIGIPSNRFTYTYVLKACVVSELS 191

Query: 290 DLGIQ---YFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 338
              ++      + +  +G        T ++D+  R G +  A  +   MP K
Sbjct: 192 ICPLRKGKEIHAHILRHGYEGHVHVMTTLLDVYARFGYVSYASSVFGAMPDK 243



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 47/200 (23%), Positives = 91/200 (45%), Gaps = 30/200 (15%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK--DTA-SWNTMI 77
           G +  A  +F  +P  ++VS++ M++C   N +  + A + FQ + ++  DT  +  TM+
Sbjct: 228 GYVSYASSVFGAMPDKNIVSWSAMIACYAKN-EMPMKALELFQIMMLEACDTVPNPITMV 286

Query: 78  SGFVQKKNMAK------------ARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFK 125
           S      ++A              R L   +P  N+     +I+ Y  CG++     +F 
Sbjct: 287 SVLQACASLAALEHGKLVHAYVLRRGLDSTLPVLNT-----LITMYGRCGEISTGQRVFD 341

Query: 126 VAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHL 185
               + V++W ++IS Y   G       +  +++   MI  G+ P+  +  +VL  CSH 
Sbjct: 342 YMKKRDVISWNSLISIYGMHGL-----GKKAIQIFENMINRGVSPSYITFITVLCACSHA 396

Query: 186 SSLQLGKQVHQLVFKSPLCK 205
             ++  K    ++F+S L K
Sbjct: 397 GLVEEAK----ILFESMLNK 412


>gi|358347043|ref|XP_003637572.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503507|gb|AES84710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 833

 Score =  365 bits (938), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 215/591 (36%), Positives = 324/591 (54%), Gaps = 82/591 (13%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNS--DDVVAAFDFFQRLPI 67
           N+++  +AK  GK++DA ++F+++   DVV++N M++    N   +D ++ F   +   I
Sbjct: 270 NALVDMYAKC-GKMEDANKVFERMRFKDVVTWNAMVTGYSQNGRFEDALSLFGKMREEKI 328

Query: 68  K-DTASWNTMISGFVQKKNMAKARDLFLAM------PE--------------------KN 100
           + D  +W+++ISG+ Q+    +A D+F  M      P                     K 
Sbjct: 329 ESDVVTWSSVISGYAQRGFGCEAMDVFRQMCGCRCRPNVVTLMSLLSACASVGALLHGKE 388

Query: 101 SVSWS--------------------AMISGYIECGQLDKAVELF-KVAPV-KSVVAWTAM 138
           +  +S                    A+I  Y +C  L+ A  +F ++ P  + VV WT M
Sbjct: 389 THCYSVKFILKGEHNDDTDDLAVINALIDMYAKCKSLEVARAMFDEICPKDRDVVTWTVM 448

Query: 139 ISGYMKFGYVENSWAEDGLKLLRMMIGLG--IRPNASSLSSVLLGCSHLSSLQLGKQVHQ 196
           I GY + G      A   L+L   M  +   I PN  ++S VL+ C+ L++L+ GKQ+H 
Sbjct: 449 IGGYAQHGD-----ANHALQLFSEMFKIDNCIVPNDFTISCVLMACARLAALKFGKQIHA 503

Query: 197 LVFKSPLCKDTTALTP--LISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKG 254
            V +              LI MY K GD++ A  +F  + +++ V+W ++++GY  HG+ 
Sbjct: 504 YVLRRSRIDSDVLFVANCLIDMYSKSGDVDTAQVVFDSMSKRNAVSWTSLLTGYGMHGRS 563

Query: 255 EKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTC 314
           E A R+FD+M+ E +  D ITF+ +L AC+H+G+             D+G+    +HY C
Sbjct: 564 EDAFRVFDEMRKEALVLDGITFLVVLYACSHSGM-------------DFGVDPGVEHYAC 610

Query: 315 MVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPAN 374
           MVDLLGRAG+L EA+ LI  MP +P P ++  LLSACR+H   +LAEFAA  L  L   N
Sbjct: 611 MVDLLGRAGRLGEAMRLINDMPIEPTPVVWIALLSACRIHSNEELAEFAAKKLLELKADN 670

Query: 375 AAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPE 434
             G Y  L+NIYA  ++W DVARI   MK   + K+PG+SW++    +  F  GDR H +
Sbjct: 671 D-GTYTLLSNIYANARRWKDVARIGYLMKRTGIKKIPGWSWVKGRKGMETFYVGDRTHLQ 729

Query: 435 LVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGT 494
              I+E L +L KR+K         F+LH V +E K   L  HSEKLA+A+ ++ +P G 
Sbjct: 730 SQKIYETLADLIKRIKA-------NFSLHDVDDEEKGDQLSEHSEKLALAYAILTLPPGA 782

Query: 495 PIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           PIR+ KNLR+CGD H A  YIS I + EII+RD++RFH FK+G+CSC  YW
Sbjct: 783 PIRITKNLRICGDFHSAITYISMIVEHEIILRDSSRFHQFKNGSCSCKGYW 833



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 92/306 (30%), Positives = 152/306 (49%), Gaps = 22/306 (7%)

Query: 67  IKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELF-- 124
           ++D    N ++  + +   M  A  +F  M  K+ V+W+AM++GY + G+ + A+ LF  
Sbjct: 263 VEDVFVGNALVDMYAKCGKMEDANKVFERMRFKDVVTWNAMVTGYSQNGRFEDALSLFGK 322

Query: 125 -KVAPVKS-VVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGC 182
            +   ++S VV W+++ISGY + G+       + + + R M G   RPN  +L S+L  C
Sbjct: 323 MREEKIESDVVTWSSVISGYAQRGF-----GCEAMDVFRQMCGCRCRPNVVTLMSLLSAC 377

Query: 183 SHLSSLQLGKQVH----QLVFKSPLCKDT---TALTPLISMYCKCGDLEDACKLFLEI-- 233
           + + +L  GK+ H    + + K     DT     +  LI MY KC  LE A  +F EI  
Sbjct: 378 ASVGALLHGKETHCYSVKFILKGEHNDDTDDLAVINALIDMYAKCKSLEVARAMFDEICP 437

Query: 234 QRKDVVTWNAMISGYAQHGKGEKALRLFDKM--KDEGMKPDSITFVALLLACNHAGLVDL 291
           + +DVVTW  MI GYAQHG    AL+LF +M   D  + P+  T   +L+AC     +  
Sbjct: 438 KDRDVVTWTVMIGGYAQHGDANHALQLFSEMFKIDNCIVPNDFTISCVLMACARLAALKF 497

Query: 292 GIQYFDSMVNDYGIAAKPDHY-TCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSA 350
           G Q    ++    I +       C++D+  ++G +  A  +   M  K     + +LL+ 
Sbjct: 498 GKQIHAYVLRRSRIDSDVLFVANCLIDMYSKSGDVDTAQVVFDSMS-KRNAVSWTSLLTG 556

Query: 351 CRVHKR 356
             +H R
Sbjct: 557 YGMHGR 562



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 73/222 (32%), Positives = 117/222 (52%), Gaps = 12/222 (5%)

Query: 98  EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSV---VAWTAMISGYMKFGYVENSWAE 154
           E N    +A+IS Y +C  +  A ++F     + +   V W +++S Y    +V N    
Sbjct: 158 ESNVFVCNAVISMYGKCKAVVHARKVFDELCYRGICDSVTWNSIVSVY-SHCFVPNV--- 213

Query: 155 DGLKLLR-MMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPL 213
             + L R M +G GI P+   + ++L  C +L     G+QVH    +S L +D      L
Sbjct: 214 -AVSLFREMTVGYGILPDTVGVVNILPVCGYLGLGLCGRQVHGFCVRSGLVEDVFVGNAL 272

Query: 214 ISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDS 273
           + MY KCG +EDA K+F  ++ KDVVTWNAM++GY+Q+G+ E AL LF KM++E ++ D 
Sbjct: 273 VDMYAKCGKMEDANKVFERMRFKDVVTWNAMVTGYSQNGRFEDALSLFGKMREEKIESDV 332

Query: 274 ITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCM 315
           +T+ +++      G    G +  D      G   +P+  T M
Sbjct: 333 VTWSSVISGYAQRG---FGCEAMDVFRQMCGCRCRPNVVTLM 371



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 68/241 (28%), Positives = 109/241 (45%), Gaps = 13/241 (5%)

Query: 105 SAMISGYIECGQLDKAVELFK--VAPVKSVVAW-TAMISGYMKFGYVENSWAEDGLKLLR 161
           + +I  YI    +  A+ L +  V P  S V W   +I   + F    NS     L+L R
Sbjct: 61  TNLIYTYISSNSITNAILLLEKNVTPSHSSVYWWNQLIRHALHF----NS-PNTALRLFR 115

Query: 162 MMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCG 221
            M  L   P+  +   V   C  +S+ +LG  +H  V +     +      +ISMY KC 
Sbjct: 116 RMKTLHWTPDHYTFPFVFKACGEISNFELGASIHGCVIRLGFESNVFVCNAVISMYGKCK 175

Query: 222 DLEDACKLFLEIQRK---DVVTWNAMISGYAQHGKGEKALRLFDKMK-DEGMKPDSITFV 277
            +  A K+F E+  +   D VTWN+++S Y+       A+ LF +M    G+ PD++  V
Sbjct: 176 AVVHARKVFDELCYRGICDSVTWNSIVSVYSHCFVPNVAVSLFREMTVGYGILPDTVGVV 235

Query: 278 ALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPF 337
            +L  C + GL   G Q     V   G+         +VD+  + GK+ +A  + ++M F
Sbjct: 236 NILPVCGYLGLGLCGRQVHGFCVRS-GLVEDVFVGNALVDMYAKCGKMEDANKVFERMRF 294

Query: 338 K 338
           K
Sbjct: 295 K 295



 Score = 45.8 bits (107), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 33/133 (24%), Positives = 68/133 (51%), Gaps = 14/133 (10%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPD--VVSYNIMLSCILLNSDDVVAAFDF 61
           +  V W  ++ G+A Q G    A +LF ++ + D  +V  +  +SC+L+    + AA  F
Sbjct: 440 RDVVTWTVMIGGYA-QHGDANHALQLFSEMFKIDNCIVPNDFTISCVLMACARL-AALKF 497

Query: 62  --------FQRLPIKDTASW--NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGY 111
                    +R  I     +  N +I  + +  ++  A+ +F +M ++N+VSW+++++GY
Sbjct: 498 GKQIHAYVLRRSRIDSDVLFVANCLIDMYSKSGDVDTAQVVFDSMSKRNAVSWTSLLTGY 557

Query: 112 IECGQLDKAVELF 124
              G+ + A  +F
Sbjct: 558 GMHGRSEDAFRVF 570


>gi|302800080|ref|XP_002981798.1| hypothetical protein SELMODRAFT_115031 [Selaginella moellendorffii]
 gi|300150630|gb|EFJ17280.1| hypothetical protein SELMODRAFT_115031 [Selaginella moellendorffii]
          Length = 483

 Score =  365 bits (938), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 191/448 (42%), Positives = 272/448 (60%), Gaps = 6/448 (1%)

Query: 98  EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGL 157
           E ++V  + +I+ Y  C   DKA+E+F     KSVV WTAMI+ + + G        + L
Sbjct: 42  ELDTVLGTNLINMYSRCDVPDKAIEVFDAMHNKSVVVWTAMIAAHSQQGQ-----GLEAL 96

Query: 158 KLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMY 217
           +L + M   G+R +  + S VL  C++L++L   + +H  V  + L +D      L++MY
Sbjct: 97  ELFKRMDIEGVRADKVAFSLVLDVCANLAALAQARILHATVAGTELEQDMVVKNTLVNMY 156

Query: 218 CKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFV 277
            KCG L +A ++F ++  KD+V+W ++I+ YAQ G    A  LF  M+  G   D++ FV
Sbjct: 157 GKCGKLNEARQVFEKMASKDMVSWTSIIAAYAQQGSASAAFELFHAMQQAGEAIDTVIFV 216

Query: 278 ALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPF 337
            ++  CNHAGL+     +F SM+ DYG++   ++Y C++DLLGR G+L +  DL++ M  
Sbjct: 217 KVMSGCNHAGLLKDARNWFVSMLQDYGLSPVNENYACILDLLGRLGQLQDVEDLLENMTL 276

Query: 338 KPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVAR 397
           +P    + + L+AC+VHK +     AA  L  LN  N+A  YV L++I+A   K+D  A+
Sbjct: 277 EPDFIAWMSFLNACKVHKDMKRGVRAAQRLVQLNRRNSAS-YVLLSDIHAVCGKFDAAAK 335

Query: 398 IRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPD 457
           +R  +  +   K+PG SWIE+   VH+F SG R HP    I  +L+ L   M+ AGYVPD
Sbjct: 336 LRRRIGRDCGKKVPGLSWIEIKDKVHKFASGSRTHPRNDEIFAELQRLGVLMREAGYVPD 395

Query: 458 LEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISA 517
            E  L  V EE KEQ+L +HSEK A+AFGLI  P GTP+RV KNLRVC DCH ATK+IS 
Sbjct: 396 TEVVLMDVEEEEKEQVLCYHSEKQAMAFGLISTPSGTPLRVVKNLRVCTDCHTATKFISK 455

Query: 518 IEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           I  R+I VRD  RFH FKDG CSC DYW
Sbjct: 456 ITGRQITVRDANRFHEFKDGFCSCKDYW 483



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 58/175 (33%), Positives = 91/175 (52%), Gaps = 7/175 (4%)

Query: 167 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 226
           G+R + S+ +SV+  C+ L  L LG+ +H  +       DT   T LI+MY +C   + A
Sbjct: 5   GLRGDRSTFTSVIEACACLPDLTLGQLLHYRMITLGCELDTVLGTNLINMYSRCDVPDKA 64

Query: 227 CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC-NH 285
            ++F  +  K VV W AMI+ ++Q G+G +AL LF +M  EG++ D + F  +L  C N 
Sbjct: 65  IEVFDAMHNKSVVVWTAMIAAHSQQGQGLEALELFKRMDIEGVRADKVAFSLVLDVCANL 124

Query: 286 AGLVDLGIQYFDSMVNDYGIAAKPDHY--TCMVDLLGRAGKLVEAVDLIKKMPFK 338
           A L    I +        G   + D      +V++ G+ GKL EA  + +KM  K
Sbjct: 125 AALAQARILH----ATVAGTELEQDMVVKNTLVNMYGKCGKLNEARQVFEKMASK 175



 Score = 52.0 bits (123), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 64/300 (21%), Positives = 133/300 (44%), Gaps = 35/300 (11%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M+ K+ V W +++A  ++Q G+  +A ELF ++    V +  +  S +L    DV A   
Sbjct: 71  MHNKSVVVWTAMIAAHSQQ-GQGLEALELFKRMDIEGVRADKVAFSLVL----DVCANLA 125

Query: 61  FFQRLPI-----------KDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMIS 109
              +  I           +D    NT+++ + +   + +AR +F  M  K+ VSW+++I+
Sbjct: 126 ALAQARILHATVAGTELEQDMVVKNTLVNMYGKCGKLNEARQVFEKMASKDMVSWTSIIA 185

Query: 110 GYIECGQLDKAVELF----KVAPVKSVVAWTAMISGYMKFGYVENS--WAEDGLKLLRMM 163
            Y + G    A ELF    +       V +  ++SG    G ++++  W       + M+
Sbjct: 186 AYAQQGSASAAFELFHAMQQAGEAIDTVIFVKVMSGCNHAGLLKDARNW------FVSML 239

Query: 164 IGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDL 223
              G+ P   + + +L     L  LQ    V  L+    L  D  A    ++      D+
Sbjct: 240 QDYGLSPVNENYACILDLLGRLGQLQ---DVEDLLENMTLEPDFIAWMSFLNACKVHKDM 296

Query: 224 E---DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKM-KDEGMKPDSITFVAL 279
           +    A +  +++ R++  ++  +   +A  GK + A +L  ++ +D G K   ++++ +
Sbjct: 297 KRGVRAAQRLVQLNRRNSASYVLLSDIHAVCGKFDAAAKLRRRIGRDCGKKVPGLSWIEI 356


>gi|357131877|ref|XP_003567560.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 808

 Score =  365 bits (938), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 217/626 (34%), Positives = 325/626 (51%), Gaps = 88/626 (14%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKD---------------AQELFDKIP---------QP 36
           M  +  V WN++LAG+A   GK  D               A  L   +P         Q 
Sbjct: 190 MPARDVVAWNAMLAGYALH-GKYSDTIACLLLMQDDHAPNASTLVALLPLLAQHGALSQG 248

Query: 37  DVVSYNIMLSCILLNSDD-----------------VVAAFDFFQRLPIKDTASWNTMISG 79
             V    + +C L +  D                 +V A   F+ + +++  +W+ ++ G
Sbjct: 249 RAVHAYSVRACSLHDHKDGVLVGTALLDMYAKCGHLVYASRVFEAMAVRNEVTWSALVGG 308

Query: 80  FVQKKNMAKARDLF-------LAMPEKNSVS----------------------------- 103
           FV    M +A  LF       L      SV+                             
Sbjct: 309 FVLCGRMLEAFSLFKDMLAQGLCFLSPTSVASALRACANLSDLCLGKQLHALLAKSGLHT 368

Query: 104 ----WSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKL 159
                ++++S Y + G +D+A  LF    VK  V+++A++SGY     V+N  A++  ++
Sbjct: 369 DLTAGNSLLSMYAKAGLIDQATTLFDQMVVKDTVSYSALVSGY-----VQNGKADEAFRV 423

Query: 160 LRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCK 219
            R M    ++P+ +++ S++  CSHL++LQ GK  H  V    +  +T+    LI MY K
Sbjct: 424 FRKMQACNVQPDVATMVSLIPACSHLAALQHGKCGHGSVIVRGIASETSICNALIDMYAK 483

Query: 220 CGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVAL 279
           CG ++ + ++F  +  +D+V+WN MI+GY  HG G++A  LF  MK +  +PD +TF+ L
Sbjct: 484 CGRIDLSRQIFDVMPARDIVSWNTMIAGYGIHGLGKEATALFLDMKHQACEPDDVTFICL 543

Query: 280 LLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKP 339
           + AC+H+GLV  G ++F  M + YGI  + +HY  MVDLL R G L EA   I+ MP K 
Sbjct: 544 ISACSHSGLVTEGKRWFHMMAHKYGITPRMEHYIGMVDLLARGGFLDEAYQFIQGMPLKA 603

Query: 340 QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIR 399
              ++G LL ACRVHK +DL +  +  +  L P    G +V L+NI++A  ++D+ A +R
Sbjct: 604 DVRVWGALLGACRVHKNIDLGKQVSSMIQQLGP-EGTGNFVLLSNIFSAAGRFDEAAEVR 662

Query: 400 LSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLE 459
           +  KE    K PG SWIE+   +H F  GDR H +   I+++L  +   +   GY  D  
Sbjct: 663 IIQKEQGFKKSPGCSWIEINGSLHAFIGGDRSHAQSSEIYQELDNILVDINKLGYRADTS 722

Query: 460 FALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIE 519
           F L  V EE KE+ LL+HSEKLAIAFG++ +     I V KNLRVCGDCH   KY++ + 
Sbjct: 723 FVLQDVEEEEKEKALLYHSEKLAIAFGVLTLSEDKTIFVTKNLRVCGDCHTVIKYMTLVR 782

Query: 520 KREIIVRDTTRFHHFKDGTCSCGDYW 545
           KR IIVRD  RFHHFK+G CSCGD+W
Sbjct: 783 KRAIIVRDANRFHHFKNGQCSCGDFW 808



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 87/357 (24%), Positives = 156/357 (43%), Gaps = 40/357 (11%)

Query: 6   TVNWNSVLAGFAKQR---GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSD---DVVAAF 59
            +N+  ++      R   G L  A+ LFD+IP P +  YN ++    L        +   
Sbjct: 59  NINFPHIICQIDHNRMICGDLSLARHLFDQIPAPGIHDYNALIRAYSLRGPALALRLYRS 118

Query: 60  DFFQRLPIKDTASWNTMISGFVQKKNMAKAR-------------DLFLAMPEKNSVSWSA 106
              +RLP  +  ++  ++       ++  AR             DLF++         +A
Sbjct: 119 LRRRRLPQPNNYTFPFVLKACSALLDLRSARAVHCHAARAGLHADLFVS---------TA 169

Query: 107 MISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGL 166
           ++  Y +C     A  +F+  P + VVAW AM++GY   G   ++ A        +++  
Sbjct: 170 LVDVYAKCASFRHAATVFRRMPARDVVAWNAMLAGYALHGKYSDTIA------CLLLMQD 223

Query: 167 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKD----TTALTPLISMYCKCGD 222
              PNAS+L ++L   +   +L  G+ VH    ++    D        T L+ MY KCG 
Sbjct: 224 DHAPNASTLVALLPLLAQHGALSQGRAVHAYSVRACSLHDHKDGVLVGTALLDMYAKCGH 283

Query: 223 LEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVA-LLL 281
           L  A ++F  +  ++ VTW+A++ G+   G+  +A  LF  M  +G+   S T VA  L 
Sbjct: 284 LVYASRVFEAMAVRNEVTWSALVGGFVLCGRMLEAFSLFKDMLAQGLCFLSPTSVASALR 343

Query: 282 ACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 338
           AC +   + LG Q   +++   G+         ++ +  +AG + +A  L  +M  K
Sbjct: 344 ACANLSDLCLGKQ-LHALLAKSGLHTDLTAGNSLLSMYAKAGLIDQATTLFDQMVVK 399



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 76/284 (26%), Positives = 117/284 (41%), Gaps = 23/284 (8%)

Query: 114 CGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNAS 173
           CG L  A  LF   P   +  + A+I  Y   G      A        +      +PN  
Sbjct: 76  CGDLSLARHLFDQIPAPGIHDYNALIRAYSLRGP-----ALALRLYRSLRRRRLPQPNNY 130

Query: 174 SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI 233
           +   VL  CS L  L+  + VH    ++ L  D    T L+ +Y KC     A  +F  +
Sbjct: 131 TFPFVLKACSALLDLRSARAVHCHAARAGLHADLFVSTALVDVYAKCASFRHAATVFRRM 190

Query: 234 QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGI 293
             +DVV WNAM++GYA HGK    +     M+D+   P++ T VALL      G +  G 
Sbjct: 191 PARDVVAWNAMLAGYALHGKYSDTIACLLLMQDD-HAPNASTLVALLPLLAQHGALSQG- 248

Query: 294 QYFDSMVNDYGIAAKPDH--------YTCMVDLLGRAGKLVEAVDLIKKMPFKPQ---PA 342
                 V+ Y + A   H         T ++D+  + G LV A  + + M  + +    A
Sbjct: 249 ----RAVHAYSVRACSLHDHKDGVLVGTALLDMYAKCGHLVYASRVFEAMAVRNEVTWSA 304

Query: 343 IFGTLLSACRVHKRLDL-AEFAAMNLFNLNPANAAGCYVQLANI 385
           + G  +   R+ +   L  +  A  L  L+P + A      AN+
Sbjct: 305 LVGGFVLCGRMLEAFSLFKDMLAQGLCFLSPTSVASALRACANL 348


>gi|302801035|ref|XP_002982274.1| hypothetical protein SELMODRAFT_116224 [Selaginella moellendorffii]
 gi|300149866|gb|EFJ16519.1| hypothetical protein SELMODRAFT_116224 [Selaginella moellendorffii]
          Length = 920

 Score =  365 bits (938), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 234/633 (36%), Positives = 328/633 (51%), Gaps = 98/633 (15%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQ----PDVVSY--------------- 41
           M V+  V+WN+++A FA Q G    A  ++ ++ Q    P+ +++               
Sbjct: 298 MAVRNHVSWNAMIAAFA-QCGHRSAAFAIYWRMQQEGFRPNKITFVTALKAACSSSSQDL 356

Query: 42  -----------------NIMLSCILLNSDDVVAAFD----FFQRLPIKDTASWNTMISGF 80
                            ++M+   L+       A D     F  +P K+  SWN M++ +
Sbjct: 357 GESAALHGWIACAGLEGDVMVGTALVTMYGSTGAIDRARAAFDAIPAKNIVSWNAMLTAY 416

Query: 81  VQKKNMAKARDLFLAMPEK----NSVSW-----------------------------SAM 107
                  +A +LF AM  +    N VS+                             S++
Sbjct: 417 GDNGRAREAMELFAAMKRQSLAPNKVSYLAVLGCCEDVSEARSIHAEVVGNGLFAQESSI 476

Query: 108 ISG----YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAED---GLKLL 160
            +G    +   G L++AV  F    VK  V+W   ++          S  ED    +   
Sbjct: 477 ANGVVRMFARSGSLEEAVAAFDATVVKDSVSWNTKVAAL--------SAREDLHGAITAF 528

Query: 161 RMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQ-LVFKSPLCKDTTALTPLISMYCK 219
             M   G RP+  +L SV+  C+ L +L+LG+ + Q L     + +D    + +++M  K
Sbjct: 529 YTMQHEGFRPDKFTLVSVVDVCADLGTLELGRSIQQQLSAAIEVERDVVVASAVMNMVAK 588

Query: 220 CGDLEDAC-KLFLEI--QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEG-MKPDSIT 275
           CG   D C +LF  +   RKD+V WN MI+ YAQHG G KAL+LF  M+    ++PDS T
Sbjct: 589 CGSSVDECERLFARMPDDRKDLVAWNTMIAAYAQHGHGRKALKLFRIMQQRSSVRPDSST 648

Query: 276 FVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKP-DHYTCMVDLLGRAGKLVEAVDLIKK 334
           FV++L  C+HAGLV+ GI  F       GI  +P +HY C+VD+LGR G L EA D I+K
Sbjct: 649 FVSVLSGCSHAGLVEDGIHCFFLAREVLGIEQQPVEHYACLVDVLGRMGYLREAEDFIRK 708

Query: 335 MPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDD 394
           MP      ++ +LL AC  +  L+  E AA     L  +++ G YV L+NIYAA  +W+D
Sbjct: 709 MPLPADSVVWTSLLGACSSYGDLEGGERAARAFIELYRSDSVG-YVVLSNIYAAAGRWED 767

Query: 395 VARIRLSMKENNVVK-MPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAG 453
             R+R  M E  V K +PG S I V   VHEF + DR HP+  +I+ +L+ L+  ++ AG
Sbjct: 768 SIRVREDMAERRVKKRVPGKSSIVVKNRVHEFFARDRSHPQSDAIYAELERLKGLIREAG 827

Query: 454 YVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATK 513
           YVPD    LH V EE KEQLL +HSEKLAIAFGLI VP    IRV KNLRVC DCH ATK
Sbjct: 828 YVPDTRLVLHDVEEEQKEQLLWYHSEKLAIAFGLISVPHRHSIRVIKNLRVCKDCHTATK 887

Query: 514 YISAIEKREIIVRDTTRFHHF-KDGTCSCGDYW 545
           +I+ + +REI VRD  RFHHF KDG CSCGDYW
Sbjct: 888 FIARVTQREIAVRDCNRFHHFGKDGECSCGDYW 920



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 80/319 (25%), Positives = 155/319 (48%), Gaps = 18/319 (5%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK----DTASWNTM 76
           G ++ A E+F +I  PD++ +N  +     N +    A    +R+ ++    + AS+  +
Sbjct: 184 GCVESALEVFSRIQVPDLICWNAAIMACAGNDERPDRALLLVRRMWLEGLLPNRASFVAI 243

Query: 77  ISGFVQKKNMAKARDLFLAMPE----KNSVSWSAMISGYIECGQLDKAVELFKVAPVKSV 132
           +S      ++  AR +   + E     + V  +A+++ Y  CG +D+++ +F+   V++ 
Sbjct: 244 LSSCGDHSSLPLARSIHARVEELGFLGDVVVATALVTMYGRCGSVDESIAVFEAMAVRNH 303

Query: 133 VAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGK 192
           V+W AMI+ + + G+   ++A     +   M   G RPN  +  + L      SS  LG+
Sbjct: 304 VSWNAMIAAFAQCGHRSAAFA-----IYWRMQQEGFRPNKITFVTALKAACSSSSQDLGE 358

Query: 193 Q--VHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQ 250
              +H  +  + L  D    T L++MY   G ++ A   F  I  K++V+WNAM++ Y  
Sbjct: 359 SAALHGWIACAGLEGDVMVGTALVTMYGSTGAIDRARAAFDAIPAKNIVSWNAMLTAYGD 418

Query: 251 HGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPD 310
           +G+  +A+ LF  MK + + P+ ++++A+L  C     V         +V +   A +  
Sbjct: 419 NGRAREAMELFAAMKRQSLAPNKVSYLAVLGCCED---VSEARSIHAEVVGNGLFAQESS 475

Query: 311 HYTCMVDLLGRAGKLVEAV 329
               +V +  R+G L EAV
Sbjct: 476 IANGVVRMFARSGSLEEAV 494



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 96/389 (24%), Positives = 175/389 (44%), Gaps = 38/389 (9%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
           N ++  ++K R  L DA   F  +    + ++N +++          A FD + R+ +++
Sbjct: 63  NYLVQMYSKCR-SLDDANAAFSALRSRGIATWNTLIAA----QSSPAAVFDLYTRMKLEE 117

Query: 70  -----------------TASWNTMISGFVQKKNMAKAR----DLFLAMPEKNSVSWSAMI 108
                             AS +   S   +  ++A+AR    D+  +  E++    +A++
Sbjct: 118 RAENRPNKLTIIAVLGAIASGDPSSSSSSRAPSIAQARIVHDDIRGSDLERDLFVATALL 177

Query: 109 SGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGI 168
             Y +CG ++ A+E+F    V  ++ W A I          +   +  L L+R M   G+
Sbjct: 178 DAYGKCGCVESALEVFSRIQVPDLICWNAAIMACAG----NDERPDRALLLVRRMWLEGL 233

Query: 169 RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK 228
            PN +S  ++L  C   SSL L + +H  V +     D    T L++MY +CG ++++  
Sbjct: 234 LPNRASFVAILSSCGDHSSLPLARSIHARVEELGFLGDVVVATALVTMYGRCGSVDESIA 293

Query: 229 LFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGL 288
           +F  +  ++ V+WNAMI+ +AQ G    A  ++ +M+ EG +P+ ITFV  L A   +  
Sbjct: 294 VFEAMAVRNHVSWNAMIAAFAQCGHRSAAFAIYWRMQQEGFRPNKITFVTALKAACSSSS 353

Query: 289 VDLG-IQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTL 347
            DLG        +   G+       T +V + G  G +  A      +P K     +  +
Sbjct: 354 QDLGESAALHGWIACAGLEGDVMVGTALVTMYGSTGAIDRARAAFDAIPAK-NIVSWNAM 412

Query: 348 LSA----CRVHKRLDLAEFAAMNLFNLNP 372
           L+A     R  + ++L  FAAM   +L P
Sbjct: 413 LTAYGDNGRAREAMEL--FAAMKRQSLAP 439



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 56/112 (50%), Gaps = 6/112 (5%)

Query: 174 SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI 233
           +L+ +L  C   + L  G+Q+H+ + K  L ++      L+ MY KC  L+DA   F  +
Sbjct: 26  TLAGLLRRCIGDADLAQGRQLHRQIVKQGLARNDLLGNYLVQMYSKCRSLDDANAAFSAL 85

Query: 234 QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGM---KPDSITFVALLLA 282
           + + + TWN +I   A          L+ +MK E     +P+ +T +A+L A
Sbjct: 86  RSRGIATWNTLI---AAQSSPAAVFDLYTRMKLEERAENRPNKLTIIAVLGA 134


>gi|224136143|ref|XP_002322250.1| predicted protein [Populus trichocarpa]
 gi|222869246|gb|EEF06377.1| predicted protein [Populus trichocarpa]
          Length = 548

 Score =  365 bits (937), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 199/533 (37%), Positives = 309/533 (57%), Gaps = 16/533 (3%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRL--PIKDTASWN--TM 76
           G + DA+ LFD++P+ ++VS+N ++S  L++  D + AF  F  +     D  S+    M
Sbjct: 24  GMMIDARRLFDEMPERNLVSWNTIISG-LVDVGDFMEAFRLFLNMWEEFSDAGSFTFAVM 82

Query: 77  ISGFVQKKNMAKARDLF---LAMPEKNSVSWS-AMISGYIECGQLDKAVELFKVAPVKSV 132
           I      + ++  R L    L M   + +  S A+I  Y +CG ++ A  +F+  P K+ 
Sbjct: 83  IRASAGLELISIGRQLHACTLKMGIGDDIFVSCALIDMYSKCGSIEDARFVFEEMPEKTT 142

Query: 133 VAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGK 192
           V W  +I+GY   GY     +E+ L +   M   G++ +  + S ++  C+ L+S++  K
Sbjct: 143 VGWNTIIAGYALHGY-----SEEALDMYYEMRDSGVKMDHFTFSMIVRICARLASVEHAK 197

Query: 193 QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHG 252
           Q H  + +     D  A T L+  Y K G +EDA  +F ++  K+V++WNA+I GY  HG
Sbjct: 198 QAHAALIRHGFGSDIVANTALVDFYSKWGRIEDARHVFDKMASKNVISWNALIGGYGNHG 257

Query: 253 KGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY 312
           +G +A+ LF++M  E M P+ ITF+A+L AC+H+GL + G + F SM  D  I  +  HY
Sbjct: 258 RGSEAVELFEQMIQERMNPNHITFLAVLSACSHSGLSERGWEIFQSMGRDNRIKPRAMHY 317

Query: 313 TCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNP 372
            CM++L+GR G L EA+ LI+  PFKP   ++  LL+ACRV++  +L +FAA  L+ + P
Sbjct: 318 ACMIELMGREGLLDEALALIRGAPFKPTANMWAALLTACRVNENFELGKFAAEKLYGMEP 377

Query: 373 ANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVH 432
            +    Y+ L NIY +     + A +  ++K   +   P  SWIEV    H F SGD  H
Sbjct: 378 -DKLNNYIVLLNIYNSAGNLKEAADVVHTLKRKGLRMRPVCSWIEVKRRPHVFLSGDNRH 436

Query: 433 PELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPL 492
           P+   I++K+ +L   +   GYVP+ +  L  V E+ +E++ L+HSEKLAIAFGLI  P 
Sbjct: 437 PQRKEIYQKVDKLMLEISKYGYVPNQKTLLPDVDEQ-EERVRLYHSEKLAIAFGLISTPY 495

Query: 493 GTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
             P+++ +  R+CGDCH A K I+ +  REI++RD  RFHHFK G CSC DYW
Sbjct: 496 WAPLQIVQGHRICGDCHEAIKLIARVTGREIVIRDAGRFHHFKHGHCSCEDYW 548



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 66/231 (28%), Positives = 116/231 (50%), Gaps = 12/231 (5%)

Query: 111 YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIR- 169
           +++CG +  A  LF   P +++V+W  +ISG +  G        D ++  R+ + +    
Sbjct: 20  HVKCGMMIDARRLFDEMPERNLVSWNTIISGLVDVG--------DFMEAFRLFLNMWEEF 71

Query: 170 PNASSLSSVLL--GCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC 227
            +A S +  ++    + L  + +G+Q+H    K  +  D      LI MY KCG +EDA 
Sbjct: 72  SDAGSFTFAVMIRASAGLELISIGRQLHACTLKMGIGDDIFVSCALIDMYSKCGSIEDAR 131

Query: 228 KLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG 287
            +F E+  K  V WN +I+GYA HG  E+AL ++ +M+D G+K D  TF  ++  C    
Sbjct: 132 FVFEEMPEKTTVGWNTIIAGYALHGYSEEALDMYYEMRDSGVKMDHFTFSMIVRICARLA 191

Query: 288 LVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 338
            V+   Q   +++  +G  +     T +VD   + G++ +A  +  KM  K
Sbjct: 192 SVEHAKQAHAALIR-HGFGSDIVANTALVDFYSKWGRIEDARHVFDKMASK 241



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 75/332 (22%), Positives = 139/332 (41%), Gaps = 57/332 (17%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCI------LLNSDD 54
           M  KTTV WN+++AG+A   G  ++A +++ ++    V   +   S I      L + + 
Sbjct: 137 MPEKTTVGWNTIIAGYALH-GYSEEALDMYYEMRDSGVKMDHFTFSMIVRICARLASVEH 195

Query: 55  VVAAFDFFQRLPIKDTASWNTMISGFVQK-KNMAKARDLFLAMPEKNSVSWSAMISGYIE 113
              A     R         NT +  F  K   +  AR +F  M  KN +SW+A+I GY  
Sbjct: 196 AKQAHAALIRHGFGSDIVANTALVDFYSKWGRIEDARHVFDKMASKNVISWNALIGGYGN 255

Query: 114 CGQLDKAVELFKVAPVKSV----VAWTAMISGYMKFGYVENSW----------------- 152
            G+  +AVELF+    + +    + + A++S     G  E  W                 
Sbjct: 256 HGRGSEAVELFEQMIQERMNPNHITFLAVLSACSHSGLSERGWEIFQSMGRDNRIKPRAM 315

Query: 153 ---------AEDGL--KLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKS 201
                      +GL  + L ++ G   +P A+  +++L  C    + +LGK   + ++  
Sbjct: 316 HYACMIELMGREGLLDEALALIRGAPFKPTANMWAALLTACRVNENFELGKFAAEKLYGM 375

Query: 202 PLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKD-----VVTW-------NAMISGYA 249
              K    +  L+++Y   G+L++A  +   ++RK      V +W       +  +SG  
Sbjct: 376 EPDKLNNYIV-LLNIYNSAGNLKEAADVVHTLKRKGLRMRPVCSWIEVKRRPHVFLSGDN 434

Query: 250 QHGKGEKALRLFDKMKDE----GMKPDSITFV 277
           +H + ++  +  DK+  E    G  P+  T +
Sbjct: 435 RHPQRKEIYQKVDKLMLEISKYGYVPNQKTLL 466



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 72/149 (48%), Gaps = 2/149 (1%)

Query: 206 DTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMK 265
           D      ++ M+ KCG + DA +LF E+  +++V+WN +ISG    G   +A RLF  M 
Sbjct: 9   DQYMRNRVLLMHVKCGMMIDARRLFDEMPERNLVSWNTIISGLVDVGDFMEAFRLFLNMW 68

Query: 266 DEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKL 325
           +E     S TF  ++ A     L+ +G Q     +   GI         ++D+  + G +
Sbjct: 69  EEFSDAGSFTFAVMIRASAGLELISIGRQLHACTLK-MGIGDDIFVSCALIDMYSKCGSI 127

Query: 326 VEAVDLIKKMPFKPQPAIFGTLLSACRVH 354
            +A  + ++MP K     + T+++   +H
Sbjct: 128 EDARFVFEEMPEKTTVG-WNTIIAGYALH 155


>gi|359495864|ref|XP_002266254.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65570-like [Vitis vinifera]
          Length = 751

 Score =  365 bits (937), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 212/544 (38%), Positives = 310/544 (56%), Gaps = 17/544 (3%)

Query: 11  SVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDT 70
           S L     + GK++DA+ + D++   DVV +  ++     + +D   +   F+ +  K  
Sbjct: 216 SALVDMYAKFGKMRDARLVSDQVVGKDVVLFTALIVGYSHHGEDG-ESLQVFRNMTKKGI 274

Query: 71  -ASWNTMISGFVQKKNMAKARD-------LFLAMPEKNSVSWSAMISGYIECGQLDKAVE 122
            A+  T+ S  V   N+            +  A  E    S +++++ Y  CG +D +++
Sbjct: 275 EANEYTLSSVLVCCGNLEDLTSGRLIHGLIVKAGLESAVASQTSLLTMYYRCGLVDDSLK 334

Query: 123 LFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGC 182
           +FK     + V WT++I      G V+N   E  L   R M+   I PN+ +LSSVL  C
Sbjct: 335 VFKQFINPNQVTWTSVI-----VGLVQNGREEIALLKFRQMLRSSITPNSFTLSSVLRAC 389

Query: 183 SHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWN 242
           S L+ L+ GKQ+H +V K  L  D      LI  Y KCG  E A  +F  +   DVV+ N
Sbjct: 390 SSLAMLEQGKQIHAIVMKFGLDIDKYVGAALIDFYGKCGSTEIARSVFNGLLEVDVVSVN 449

Query: 243 AMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVND 302
           +MI  YAQ+G G +AL+LF  MKD G++P+++T++ +L ACN+AGL++ G   F S  N 
Sbjct: 450 SMIYSYAQNGFGHEALQLFSGMKDTGLEPNNVTWLGVLSACNNAGLLEEGCHIFSSARNS 509

Query: 303 YGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEF 362
             I    DHY CMVDLLGRAG+L EA  LI ++       I+ TLLSACR+H  +++A+ 
Sbjct: 510 GNIELTKDHYACMVDLLGRAGRLKEAEMLINQVNI-SDVVIWRTLLSACRIHGDVEMAKR 568

Query: 363 AAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVV 422
               + +L P +  G +V L+N+YA+   W  V  ++ +M+E  + K P  SW++V   +
Sbjct: 569 VMNRVIDLAPED-GGTHVLLSNLYASTGNWSKVIEMKSAMREMRLKKNPAMSWVDVEREI 627

Query: 423 HEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLA 482
           H F +GD  HP    I EKL+EL +++K  GYVPD  F L  + EE K + L +HSEKLA
Sbjct: 628 HTFMAGDWSHPNFRDIREKLEELIEKVKELGYVPDTRFVLQDLDEEKKIRSLYYHSEKLA 687

Query: 483 IAFGLIKVPL-GTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSC 541
           +AF L +     T IR+ KNLRVCGDCH   K++S I  R+II RD  RFHHF++G CSC
Sbjct: 688 VAFALWRSNYKNTTIRILKNLRVCGDCHTWMKFVSKIVGRDIIARDVKRFHHFRNGLCSC 747

Query: 542 GDYW 545
           GDYW
Sbjct: 748 GDYW 751



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 89/314 (28%), Positives = 160/314 (50%), Gaps = 20/314 (6%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP----IKDTASWNTM 76
           G +  A+++FD++P   +V++N M++  + N      A D +QR+     + D  +++++
Sbjct: 124 GSVVYARKVFDEVPHRHIVAWNSMIASYIRNGRS-KEAIDIYQRMVPDGILPDEFTFSSV 182

Query: 77  IS-----GFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKS 131
                  G V +   A  + + L +   N    SA++  Y + G++  A  +      K 
Sbjct: 183 FKAFSDLGLVHEGQRAHGQSVVLGVGVSNVFVGSALVDMYAKFGKMRDARLVSDQVVGKD 242

Query: 132 VVAWTAMISGYMKFGYVENSWAEDG--LKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQ 189
           VV +TA+I GY   G       EDG  L++ R M   GI  N  +LSSVL+ C +L  L 
Sbjct: 243 VVLFTALIVGYSHHG-------EDGESLQVFRNMTKKGIEANEYTLSSVLVCCGNLEDLT 295

Query: 190 LGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYA 249
            G+ +H L+ K+ L     + T L++MY +CG ++D+ K+F +    + VTW ++I G  
Sbjct: 296 SGRLIHGLIVKAGLESAVASQTSLLTMYYRCGLVDDSLKVFKQFINPNQVTWTSVIVGLV 355

Query: 250 QHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKP 309
           Q+G+ E AL  F +M    + P+S T  ++L AC+   +++ G Q   ++V  +G+    
Sbjct: 356 QNGREEIALLKFRQMLRSSITPNSFTLSSVLRACSSLAMLEQGKQ-IHAIVMKFGLDIDK 414

Query: 310 DHYTCMVDLLGRAG 323
                ++D  G+ G
Sbjct: 415 YVGAALIDFYGKCG 428



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 69/117 (58%), Gaps = 2/117 (1%)

Query: 213 LISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPD 272
           LI  Y KCG +  A K+F E+  + +V WN+MI+ Y ++G+ ++A+ ++ +M  +G+ PD
Sbjct: 116 LIDAYLKCGSVVYARKVFDEVPHRHIVAWNSMIASYIRNGRSKEAIDIYQRMVPDGILPD 175

Query: 273 SITFVALLLACNHAGLVDLGIQ-YFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEA 328
             TF ++  A +  GLV  G + +  S+V   G+ +     + +VD+  + GK+ +A
Sbjct: 176 EFTFSSVFKAFSDLGLVHEGQRAHGQSVVLGVGV-SNVFVGSALVDMYAKFGKMRDA 231


>gi|7413540|emb|CAB86020.1| putative protein [Arabidopsis thaliana]
 gi|9758453|dbj|BAB08982.1| selenium-binding protein-like [Arabidopsis thaliana]
          Length = 864

 Score =  365 bits (937), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 203/555 (36%), Positives = 314/555 (56%), Gaps = 50/555 (9%)

Query: 19  QRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDD----VVAAFDFFQRLPIKDTASWN 74
           + G + +A+    KI + D+   ++ L  +L+N+      V  A   F  +  +   SWN
Sbjct: 65  RNGAVMEAKACHGKIIRIDLEG-DVTLLNVLINAYSKCGFVELARQVFDGMLERSLVSWN 123

Query: 75  TMISGFVQKKNMAKARDLFLAMPEK----------------------------------- 99
           TMI  + + +  ++A D+FL M  +                                   
Sbjct: 124 TMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSACGVNCDALECKKLHCLSVKT 183

Query: 100 ----NSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAED 155
               N    +A++  Y +CG +  AV++F+    KS V W++M++GY     V+N   E+
Sbjct: 184 CIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQDKSSVTWSSMVAGY-----VQNKNYEE 238

Query: 156 GLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLIS 215
            L L R    + +  N  +LSSV+  CS+L++L  GKQ+H ++ KS    +    +  + 
Sbjct: 239 ALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAVICKSGFGSNVFVASSAVD 298

Query: 216 MYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSIT 275
           MY KCG L ++  +F E+Q K++  WN +ISG+A+H + ++ + LF+KM+ +GM P+ +T
Sbjct: 299 MYAKCGSLRESYIIFSEVQEKNLELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNEVT 358

Query: 276 FVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335
           F +LL  C H GLV+ G ++F  M   YG++    HY+CMVD+LGRAG L EA +LIK +
Sbjct: 359 FSSLLSVCGHTGLVEEGRRFFKLMRTTYGLSPNVVHYSCMVDILGRAGLLSEAYELIKSI 418

Query: 336 PFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDV 395
           PF P  +I+G+LL++CRV+K L+LAE AA  LF L P N AG +V L+NIYAA K+W+++
Sbjct: 419 PFDPTASIWGSLLASCRVYKNLELAEVAAEKLFELEPEN-AGNHVLLSNIYAANKQWEEI 477

Query: 396 ARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYV 455
           A+ R  +++ +V K+ G SWI++   VH F  G+  HP +  I   L  L  + +  GY 
Sbjct: 478 AKSRKLLRDCDVKKVRGKSWIDIKDKVHTFSVGESGHPRIREICSTLDNLVIKFRKFGYK 537

Query: 456 PDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYI 515
           P +E  LH V    KE+LL+ HSEKLA+ FGL+ +P  +P+R+ KNLR+C DCH   K  
Sbjct: 538 PSVEHELHDVEIGKKEELLMQHSEKLALVFGLMCLPESSPVRIMKNLRICVDCHEFMKAA 597

Query: 516 SAIEKREIIVRDTTR 530
           S   +R IIVRD  R
Sbjct: 598 SMATRRFIIVRDVNR 612



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 60/113 (53%)

Query: 171 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 230
           N + +  +L  C+   ++   K  H  + +  L  D T L  LI+ Y KCG +E A ++F
Sbjct: 52  NRNLVHEILQLCARNGAVMEAKACHGKIIRIDLEGDVTLLNVLINAYSKCGFVELARQVF 111

Query: 231 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC 283
             +  + +V+WN MI  Y ++    +AL +F +M++EG K    T  ++L AC
Sbjct: 112 DGMLERSLVSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSAC 164


>gi|414885949|tpg|DAA61963.1| TPA: hypothetical protein ZEAMMB73_954210 [Zea mays]
          Length = 633

 Score =  365 bits (937), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 194/523 (37%), Positives = 293/523 (56%), Gaps = 46/523 (8%)

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKA----RDLFLAMPEKNSVSW------------- 104
           F ++P +D  SW  +I+G+ Q    A+A     D+  A    N  ++             
Sbjct: 118 FDKMPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFTFTSLLKATGACGGC 177

Query: 105 ----------------------SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGY 142
                                 SA++  Y  C Q+D A+ +F     K+ V+W A+I+G+
Sbjct: 178 SIGEQMHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRLVSKNEVSWNALIAGF 237

Query: 143 MKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSP 202
            +      +  E  L     M   G      + SS+    + + +L+ G+ VH  + KS 
Sbjct: 238 AR-----KADGETTLMKFAEMQRNGFGATHFTYSSMFSAFARIGALEQGRWVHAHLIKSG 292

Query: 203 LCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFD 262
                     ++ MY K G + DA K+F  + ++D+VTWN M++  AQ+G G++A+  F+
Sbjct: 293 QKLTAFVGNTMLGMYAKSGSMVDARKVFDRMDKRDLVTWNTMLTALAQYGLGKEAVAHFE 352

Query: 263 KMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRA 322
           +++  G++ + ITF+++L AC+H GLV  G  YFD M+ DY +  + DHY   VDLLGRA
Sbjct: 353 EIRKCGIQLNQITFLSVLTACSHGGLVKEGKHYFD-MMKDYNVQPEIDHYVSFVDLLGRA 411

Query: 323 GKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQL 382
           G L EA+  + KMP +P  A++G LL ACR+HK   + ++AA ++F L+P +  G  V L
Sbjct: 412 GLLKEALIFVFKMPMEPTAAVWGALLGACRMHKNAKMGQYAADHVFELDPDDT-GPPVLL 470

Query: 383 ANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKL 442
            NIYA+  KW+D AR+R  MK   V K P  SW+++   VH F + D  HP+   I+   
Sbjct: 471 YNIYASTGKWNDAARVRKMMKATGVKKEPACSWVQIENSVHMFVADDDTHPKSGDIYRMW 530

Query: 443 KELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNL 502
           +E+  R+K AGYVP+    L  + E+ +E  L +HSEK+A+AF LI +P G  IR+ KN+
Sbjct: 531 EEINMRIKKAGYVPNTAHVLLHINEQERETKLKYHSEKIALAFALINMPAGASIRIMKNI 590

Query: 503 RVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           R+CGDCH A KY+S + KREI+VRDT RFHHF +G+CSCGDYW
Sbjct: 591 RICGDCHSAFKYVSKVFKREIVVRDTNRFHHFSEGSCSCGDYW 633



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 70/282 (24%), Positives = 136/282 (48%), Gaps = 11/282 (3%)

Query: 73  WNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISGYIECGQLDKAVELFKVAP 128
           ++++I+   Q KN+A AR +   +       ++   +++I  Y +CG +  A  +F   P
Sbjct: 63  YHSIIAACAQFKNLAGARAIHAHLSRSCLAGDAFLLNSLIHMYCKCGAVSDARHVFDKMP 122

Query: 129 VKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSL 188
            + VV+WT +I+GY      +N    + + LL  M+    RPN  + +S+L         
Sbjct: 123 SRDVVSWTYLIAGY-----AQNYMPAEAIGLLPDMLRARFRPNGFTFTSLLKATGACGGC 177

Query: 189 QLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGY 248
            +G+Q+H L  K    +D    + L+ MY +C  ++ A  +F  +  K+ V+WNA+I+G+
Sbjct: 178 SIGEQMHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRLVSKNEVSWNALIAGF 237

Query: 249 AQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK 308
           A+   GE  L  F +M+  G      T+ ++  A    G ++ G ++  + +   G    
Sbjct: 238 ARKADGETTLMKFAEMQRNGFGATHFTYSSMFSAFARIGALEQG-RWVHAHLIKSGQKLT 296

Query: 309 PDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSA 350
                 M+ +  ++G +V+A  +  +M  K     + T+L+A
Sbjct: 297 AFVGNTMLGMYAKSGSMVDARKVFDRMD-KRDLVTWNTMLTA 337



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 72/142 (50%)

Query: 153 AEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTP 212
           +  GL+ L ++    + P      S++  C+   +L   + +H  + +S L  D   L  
Sbjct: 41  SSTGLRELDLLHAGELAPTPRLYHSIIAACAQFKNLAGARAIHAHLSRSCLAGDAFLLNS 100

Query: 213 LISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPD 272
           LI MYCKCG + DA  +F ++  +DVV+W  +I+GYAQ+    +A+ L   M     +P+
Sbjct: 101 LIHMYCKCGAVSDARHVFDKMPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPN 160

Query: 273 SITFVALLLACNHAGLVDLGIQ 294
             TF +LL A    G   +G Q
Sbjct: 161 GFTFTSLLKATGACGGCSIGEQ 182


>gi|15229764|ref|NP_187753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169981|sp|Q9CAY1.1|PP223_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g11460
 gi|12322902|gb|AAG51440.1|AC008153_13 hypothetical protein; 50785-52656 [Arabidopsis thaliana]
 gi|332641528|gb|AEE75049.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 623

 Score =  365 bits (937), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 208/536 (38%), Positives = 305/536 (56%), Gaps = 25/536 (4%)

Query: 21  GKLKDAQELFDKIPQPDVVS--YNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMIS 78
           G + DA+++F++ PQ   +S  YN ++S    NS    AA+  F+R+     +  +  + 
Sbjct: 102 GLVADARKVFEENPQSSQLSVCYNALISGYTANSKVTDAAY-MFRRMKETGVSVDSVTML 160

Query: 79  GFVQKKNMAKARDLFLAMP--------EKNSVSWSAMISGYIECGQLDKAVELFKVAPVK 130
           G V    + +   L  ++         +      ++ I+ Y++CG ++    LF   PVK
Sbjct: 161 GLVPLCTVPEYLWLGRSLHGQCVKGGLDSEVAVLNSFITMYMKCGSVEAGRRLFDEMPVK 220

Query: 131 SVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQL 190
            ++ W A+ISGY      +N  A D L+L   M   G+ P+  +L SVL  C+HL + ++
Sbjct: 221 GLITWNAVISGYS-----QNGLAYDVLELYEQMKSSGVCPDPFTLVSVLSSCAHLGAKKI 275

Query: 191 GKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQ 250
           G +V +LV  +    +       ISMY +CG+L  A  +F  +  K +V+W AMI  Y  
Sbjct: 276 GHEVGKLVESNGFVPNVFVSNASISMYARCGNLAKARAVFDIMPVKSLVSWTAMIGCYGM 335

Query: 251 HGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPD 310
           HG GE  L LFD M   G++PD   FV +L AC+H+GL D G++ F +M  +Y +   P+
Sbjct: 336 HGMGEIGLMLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLELFRAMKREYKLEPGPE 395

Query: 311 HYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNL 370
           HY+C+VDLLGRAG+L EA++ I+ MP +P  A++G LL AC++HK +D+AE A   +   
Sbjct: 396 HYSCLVDLLGRAGRLDEAMEFIESMPVEPDGAVWGALLGACKIHKNVDMAELAFAKVIEF 455

Query: 371 NPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDR 430
            P N  G YV ++NIY+  K  + + RIR+ M+E    K PGYS++E    VH F +GDR
Sbjct: 456 EP-NNIGYYVLMSNIYSDSKNQEGIWRIRVMMRERAFRKKPGYSYVEHKGRVHLFLAGDR 514

Query: 431 VHPELVSIHEKLKELEKR-MKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIK 489
            H +   +H  L ELE   M+LAG + D +      GEEV       HSE+LAIAFG++ 
Sbjct: 515 SHEQTEEVHRMLDELETSVMELAGNM-DCD-----RGEEVSSTTRE-HSERLAIAFGILN 567

Query: 490 VPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
              GT I V KNLRVC DCH   K +S I  R+ +VRD +RFH+FKDG CSC DYW
Sbjct: 568 SIPGTEILVIKNLRVCEDCHVFLKQVSKIVDRQFVVRDASRFHYFKDGVCSCKDYW 623



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 60/191 (31%), Positives = 91/191 (47%), Gaps = 3/191 (1%)

Query: 150 NSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTA 209
            S   + + L R M+  G  P+A S   +L  C+ LS    G+Q+H  V K     +   
Sbjct: 31  QSLFSESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHVTKGGCETEPFV 90

Query: 210 LTPLISMYCKCGDLEDACKLFLEIQRKD--VVTWNAMISGYAQHGKGEKALRLFDKMKDE 267
           LT LISMYCKCG + DA K+F E  +     V +NA+ISGY  + K   A  +F +MK+ 
Sbjct: 91  LTALISMYCKCGLVADARKVFEENPQSSQLSVCYNALISGYTANSKVTDAAYMFRRMKET 150

Query: 268 GMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVE 327
           G+  DS+T + L+  C     + LG       V   G+ ++       + +  + G +  
Sbjct: 151 GVSVDSVTMLGLVPLCTVPEYLWLGRSLHGQCVKG-GLDSEVAVLNSFITMYMKCGSVEA 209

Query: 328 AVDLIKKMPFK 338
              L  +MP K
Sbjct: 210 GRRLFDEMPVK 220



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 78/326 (23%), Positives = 131/326 (40%), Gaps = 60/326 (18%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQ----PDVVSY-NIMLSCILLNSDDV 55
           M VK  + WN+V++G++ Q G   D  EL++++      PD  +  +++ SC  L +  +
Sbjct: 217 MPVKGLITWNAVISGYS-QNGLAYDVLELYEQMKSSGVCPDPFTLVSVLSSCAHLGAKKI 275

Query: 56  -------VAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMI 108
                  V +  F   + +      N  IS + +  N+AKAR +F  MP K+ VSW+AMI
Sbjct: 276 GHEVGKLVESNGFVPNVFVS-----NASISMYARCGNLAKARAVFDIMPVKSLVSWTAMI 330

Query: 109 SGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGI 168
             Y                             G    G       E GL L   MI  GI
Sbjct: 331 GCY-----------------------------GMHGMG-------EIGLMLFDDMIKRGI 354

Query: 169 RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKS-PLCKDTTALTPLISMYCKCGDLEDAC 227
           RP+ +    VL  CSH      G ++ + + +   L       + L+ +  + G L++A 
Sbjct: 355 RPDGAVFVMVLSACSHSGLTDKGLELFRAMKREYKLEPGPEHYSCLVDLLGRAGRLDEAM 414

Query: 228 KLFLEIQ--RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNH 285
           + F+E      D   W A++     H   + A   F K+ +   +P++I +  L+     
Sbjct: 415 E-FIESMPVEPDGAVWGALLGACKIHKNVDMAELAFAKVIE--FEPNNIGYYVLMSNIYS 471

Query: 286 AGLVDLGIQYFDSMVNDYGIAAKPDH 311
                 GI     M+ +     KP +
Sbjct: 472 DSKNQEGIWRIRVMMRERAFRKKPGY 497


>gi|357457743|ref|XP_003599152.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355488200|gb|AES69403.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1125

 Score =  365 bits (937), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 195/538 (36%), Positives = 307/538 (57%), Gaps = 24/538 (4%)

Query: 21   GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDD-----VVAAFDFFQRLPIKDTASWNT 75
            G + +AQ++   +P+ DVV++N ++     ++DD      + AF+  +R  +   +++ T
Sbjct: 599  GLMDEAQKVCKIMPERDVVTWNALIGG---HADDKDPNATIQAFNLMRREGL--LSNYIT 653

Query: 76   MIS--------GFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVA 127
            +++         ++ K  M     + +A  E ++   S++I+ Y +CG L+ +  +F V 
Sbjct: 654  IVNLLGTCMSPDYLLKHGMPIHAHIVVAGFELDTYVQSSLITMYAQCGDLNTSSYIFDVL 713

Query: 128  PVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSS 187
              K+   W A+ S    +G       E+ LK +  M   G+  +  S S  L    +L+ 
Sbjct: 714  ANKNSSTWNAIFSANAHYGP-----GEEALKFIARMRNDGVDLDQFSFSVALATIGNLTV 768

Query: 188  LQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISG 247
            L  G+Q+H  + K     D   L   + MY KCG+++D  ++    + +   +WN +IS 
Sbjct: 769  LDEGQQLHSWIIKLGFELDEYVLNATMDMYGKCGEIDDVFRILPIPKIRSKRSWNILISA 828

Query: 248  YAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAA 307
             A+HG   +A   F +M D G+KPD +TFV+LL AC+H GLVD G+ YF SM +++G+  
Sbjct: 829  LARHGFFRQATEAFHEMLDLGLKPDHVTFVSLLSACSHGGLVDEGLVYFSSMTSEFGVPT 888

Query: 308  KPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNL 367
              +H  C++DLLGR+G+L EA   I KMP  P   ++ +LL+AC+VH  L+L   AA  L
Sbjct: 889  AIEHCVCIIDLLGRSGRLAEAEGFIDKMPVPPNEFVWRSLLAACKVHGNLELGRKAADRL 948

Query: 368  FNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRS 427
            F LN ++ +  YV  +N+ A+ ++W DV  +R  M+  ++ K P  SWI++   V  F  
Sbjct: 949  FELNSSDDSA-YVLYSNVCASTQRWGDVENVRKQMESQSLKKKPACSWIKLKNKVMTFGM 1007

Query: 428  GDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGL 487
            GD+ HP+   I+ KL+EL K  +  G++PD  +AL    EE KE  L  HSE++A+AFGL
Sbjct: 1008 GDQFHPQSAQIYAKLEELRKMTREEGHMPDTSYALQDTDEEQKEHNLWNHSERIALAFGL 1067

Query: 488  IKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
            I    G+P+R+FKNLRVCGDCH   K +S I  R+I+VRD+ RFHHF  G CSC DYW
Sbjct: 1068 INSAEGSPLRIFKNLRVCGDCHSVFKLVSKIVGRKIVVRDSYRFHHFHGGKCSCSDYW 1125



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 85/348 (24%), Positives = 156/348 (44%), Gaps = 57/348 (16%)

Query: 37  DVVSYNIMLSCILLNSDDVVAAFDF----FQRLPIKDTASWNTMISGFVQKKNMAKARDL 92
           DV+  N   +  L+N      +  +    F ++  ++ ASWN MISGFV+     KA   
Sbjct: 176 DVIQQNTFYTNTLVNMYSKFGSIKYAQHVFDKMYDRNDASWNNMISGFVRVGWYHKAMQF 235

Query: 93  FLAMPEKNSVSWSA---------------------MISGY-IEC---------------- 114
           F  M E N V+ S+                      I GY ++C                
Sbjct: 236 FCHMFE-NGVTPSSYVIASMVTACDRSGCMTEGARQIHGYVVKCGLMSNVFVGTSLLHFY 294

Query: 115 ---GQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPN 171
              G + +A +LF+     ++V+WT+++       Y +N   ++ L + R +   G+   
Sbjct: 295 GTHGSVSEANKLFEEIEEPNIVSWTSLM-----VCYADNGHTKEVLNIYRHLRHNGLICT 349

Query: 172 ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALT---PLISMYCKCGDLEDACK 228
            +++++V+  C       +G Q+   V KS L  DT++++    LISM+     +E+A +
Sbjct: 350 GNTMATVIRTCGMFGDKTMGYQILGDVIKSGL--DTSSVSVANSLISMFGNYDSVEEASR 407

Query: 229 LFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGL 288
           +F  +Q +D ++WN++I+  A +G+ E++L  F  M+    K D IT  ALL AC  A  
Sbjct: 408 VFNNMQERDTISWNSIITASAHNGRFEESLGHFFWMRRTHPKTDYITISALLPACGSAQH 467

Query: 289 VDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 336
           +  G +    ++   G+ +       ++ +  +AG   +A  +   MP
Sbjct: 468 LKWG-RGLHGLITKSGLESNVCVCNSLLSMYAQAGSSEDAELVFHTMP 514



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 80/334 (23%), Positives = 153/334 (45%), Gaps = 21/334 (6%)

Query: 13  LAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLN--SDDVVAAFDFFQRLPIKDT 70
           L  F    G + +A +LF++I +P++VS+  ++ C   N  + +V+  +   +   +  T
Sbjct: 290 LLHFYGTHGSVSEANKLFEEIEEPNIVSWTSLMVCYADNGHTKEVLNIYRHLRHNGLICT 349

Query: 71  ASWNTMIS-----GFVQKKNMAKA--RDLFLAMPEKNSVS-WSAMISGYIECGQLDKAVE 122
              NTM +     G    K M      D+  +  + +SVS  +++IS +     +++A  
Sbjct: 350 G--NTMATVIRTCGMFGDKTMGYQILGDVIKSGLDTSSVSVANSLISMFGNYDSVEEASR 407

Query: 123 LFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGC 182
           +F     +  ++W ++I+     G  E S     L     M     + +  ++S++L  C
Sbjct: 408 VFNNMQERDTISWNSIITASAHNGRFEES-----LGHFFWMRRTHPKTDYITISALLPAC 462

Query: 183 SHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWN 242
                L+ G+ +H L+ KS L  +      L+SMY + G  EDA  +F  +  +D+++WN
Sbjct: 463 GSAQHLKWGRGLHGLITKSGLESNVCVCNSLLSMYAQAGSSEDAELVFHTMPARDLISWN 522

Query: 243 AMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVND 302
           +M++ + + GK   A+ L  +M       + +TF   L AC    L  L I +  + V  
Sbjct: 523 SMMASHVEDGKYSHAILLLVEMLKTRKAMNYVTFTTALSAC--YNLEKLKIVH--AFVIH 578

Query: 303 YGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 336
           + +         +V + G+ G + EA  + K MP
Sbjct: 579 FAVHHNLIIGNTLVTMYGKFGLMDEAQKVCKIMP 612



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 65/281 (23%), Positives = 135/281 (48%), Gaps = 16/281 (5%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNS--DDVVAAFDFFQRL-P 66
           NS+++ F      +++A  +F+ + + D +S+N +++    N   ++ +  F + +R  P
Sbjct: 390 NSLISMFGNY-DSVEEASRVFNNMQERDTISWNSIITASAHNGRFEESLGHFFWMRRTHP 448

Query: 67  IKDTASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMISGYIECGQLDKAVE 122
             D  + + ++      +++   R L   +     E N    ++++S Y + G  + A  
Sbjct: 449 KTDYITISALLPACGSAQHLKWGRGLHGLITKSGLESNVCVCNSLLSMYAQAGSSEDAEL 508

Query: 123 LFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGC 182
           +F   P + +++W +M++ +     VE+      + LL  M+      N  + ++ L  C
Sbjct: 509 VFHTMPARDLISWNSMMASH-----VEDGKYSHAILLLVEMLKTRKAMNYVTFTTALSAC 563

Query: 183 SHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWN 242
            +L  L++   VH  V    +  +      L++MY K G +++A K+   +  +DVVTWN
Sbjct: 564 YNLEKLKI---VHAFVIHFAVHHNLIIGNTLVTMYGKFGLMDEAQKVCKIMPERDVVTWN 620

Query: 243 AMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC 283
           A+I G+A        ++ F+ M+ EG+  + IT V LL  C
Sbjct: 621 ALIGGHADDKDPNATIQAFNLMRREGLLSNYITIVNLLGTC 661



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/272 (20%), Positives = 119/272 (43%), Gaps = 15/272 (5%)

Query: 74  NTMISGFVQKK-------NMAKARDLFLA--MPEKNSVSWSAMISGYIECGQLDKAVELF 124
           N  +S F+QK        N+ KA        + ++N+   + +++ Y + G +  A  +F
Sbjct: 146 NPQVSRFLQKGFSEISEGNVGKALHALCVKDVIQQNTFYTNTLVNMYSKFGSIKYAQHVF 205

Query: 125 KVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSH 184
                ++  +W  MISG+++ G     W    ++    M   G+ P++  ++S++  C  
Sbjct: 206 DKMYDRNDASWNNMISGFVRVG-----WYHKAMQFFCHMFENGVTPSSYVIASMVTACDR 260

Query: 185 LSSLQLG-KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNA 243
              +  G +Q+H  V K  L  +    T L+  Y   G + +A KLF EI+  ++V+W +
Sbjct: 261 SGCMTEGARQIHGYVVKCGLMSNVFVGTSLLHFYGTHGSVSEANKLFEEIEEPNIVSWTS 320

Query: 244 MISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDY 303
           ++  YA +G  ++ L ++  ++  G+     T   ++  C   G   +G Q    ++   
Sbjct: 321 LMVCYADNGHTKEVLNIYRHLRHNGLICTGNTMATVIRTCGMFGDKTMGYQILGDVIKSG 380

Query: 304 GIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335
              +       ++ + G    + EA  +   M
Sbjct: 381 LDTSSVSVANSLISMFGNYDSVEEASRVFNNM 412


>gi|449442178|ref|XP_004138859.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
 gi|449529652|ref|XP_004171812.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 606

 Score =  365 bits (936), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 182/442 (41%), Positives = 263/442 (59%), Gaps = 7/442 (1%)

Query: 105 SAMISGYIEC-GQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMM 163
           + M+  Y  C G ++ A ++F   P    V W+AMI GY + G      + + + L R M
Sbjct: 171 NTMVHMYSCCAGGINSARKVFDEMPKSDSVTWSAMIGGYARVGR-----STEAVALFREM 225

Query: 164 IGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDL 223
               + P+  ++ S+L  C+ L +L+LGK +   + +  + K       LI M+ KCGD+
Sbjct: 226 QMAEVCPDEITMVSMLSACTDLGALELGKWIEAYIERHEIHKPVEVSNALIDMFAKCGDI 285

Query: 224 EDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC 283
             A KLF  +  K +V+W ++I G A HG+G++A  LF++M   G+ PD + F+ LL AC
Sbjct: 286 SKALKLFRAMNEKTIVSWTSVIVGMAMHGRGQEATCLFEEMTSSGVAPDDVAFIGLLSAC 345

Query: 284 NHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAI 343
           +H+GLV+ G +YF SM+  Y +  K +HY CMVD+  R G + EA++ ++ MP +P P I
Sbjct: 346 SHSGLVERGREYFGSMMKKYKLVPKIEHYGCMVDMYCRTGLVKEALEFVRNMPIEPNPVI 405

Query: 344 FGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMK 403
             TL+SACR H    L E     L    P + +  YV L+NIYA    W+   +IR  M+
Sbjct: 406 LRTLVSACRGHGEFKLGEKITKLLMKHEPLHESN-YVLLSNIYAKTLSWEKKTKIREVME 464

Query: 404 ENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALH 463
              + K+PG + IE+   ++EF +GD+ H +   I+E + E+ + MK +GY P     L 
Sbjct: 465 VKGMKKVPGSTMIEIDNEIYEFVAGDKSHKQHKEIYEMVDEMGREMKKSGYRPSTSEVLL 524

Query: 464 AVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREI 523
            + EE KE  L  HSEKLAIAFGL++ P GTPIR+ KNLRVC DCH A+K+IS I  REI
Sbjct: 525 DINEEDKEDSLNRHSEKLAIAFGLLRTPPGTPIRIVKNLRVCSDCHSASKFISKIYDREI 584

Query: 524 IVRDTTRFHHFKDGTCSCGDYW 545
           I+RD  RFHHFK G CSCGD+W
Sbjct: 585 IMRDRNRFHHFKSGQCSCGDFW 606



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 61/202 (30%), Positives = 105/202 (51%), Gaps = 6/202 (2%)

Query: 135 WTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQV 194
           +  +I  Y + G+ ++      L L  +M+   I PN  +   VL  C+ L  L LG+ V
Sbjct: 99  FNTLIRAYAQTGHSKDK----ALALYGIMLHDAILPNKFTYPFVLKACAGLEVLNLGQTV 154

Query: 195 HQLVFKSPLCKDTTALTPLISMY-CKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGK 253
           H  V K     D      ++ MY C  G +  A K+F E+ + D VTW+AMI GYA+ G+
Sbjct: 155 HGSVVKFGFDCDIHVQNTMVHMYSCCAGGINSARKVFDEMPKSDSVTWSAMIGGYARVGR 214

Query: 254 GEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYT 313
             +A+ LF +M+   + PD IT V++L AC   G ++LG ++ ++ +  + I    +   
Sbjct: 215 STEAVALFREMQMAEVCPDEITMVSMLSACTDLGALELG-KWIEAYIERHEIHKPVEVSN 273

Query: 314 CMVDLLGRAGKLVEAVDLIKKM 335
            ++D+  + G + +A+ L + M
Sbjct: 274 ALIDMFAKCGDISKALKLFRAM 295



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 78/326 (23%), Positives = 140/326 (42%), Gaps = 63/326 (19%)

Query: 6   TVNWNSVLAGFAKQRGKLKDAQELFDKIPQ----PDVVSYNIMLS-CILLNSDDVVAAFD 60
           +V W++++ G+A+  G+  +A  LF ++      PD ++   MLS C  L + ++    +
Sbjct: 199 SVTWSAMIGGYARV-GRSTEAVALFREMQMAEVCPDEITMVSMLSACTDLGALELGKWIE 257

Query: 61  -FFQRLPI-KDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLD 118
            + +R  I K     N +I  F +  +++KA  LF AM EK  VSW+++I G    G+  
Sbjct: 258 AYIERHEIHKPVEVSNALIDMFAKCGDISKALKLFRAMNEKTIVSWTSVIVGMAMHGRGQ 317

Query: 119 KAVELFK------VAPVKSVVAWTAMISGYMKFGYVENS--------------------- 151
           +A  LF+      VAP    VA+  ++S     G VE                       
Sbjct: 318 EATCLFEEMTSSGVAP--DDVAFIGLLSACSHSGLVERGREYFGSMMKKYKLVPKIEHYG 375

Query: 152 -----WAEDGL--KLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK-SPL 203
                +   GL  + L  +  + I PN   L +++  C      +LG+++ +L+ K  PL
Sbjct: 376 CMVDMYCRTGLVKEALEFVRNMPIEPNPVILRTLVSACRGHGEFKLGEKITKLLMKHEPL 435

Query: 204 CKDTTALTPLISMYCKCGDLEDACKL--FLEIQRKDVVTWNAMI----------SGYAQH 251
            +    L  L ++Y K    E   K+   +E++    V  + MI          +G   H
Sbjct: 436 HESNYVL--LSNIYAKTLSWEKKTKIREVMEVKGMKKVPGSTMIEIDNEIYEFVAGDKSH 493

Query: 252 GKGEKALRLFD----KMKDEGMKPDS 273
            + ++   + D    +MK  G +P +
Sbjct: 494 KQHKEIYEMVDEMGREMKKSGYRPST 519


>gi|226492710|ref|NP_001145953.1| uncharacterized protein LOC100279479 [Zea mays]
 gi|219885099|gb|ACL52924.1| unknown [Zea mays]
          Length = 530

 Score =  365 bits (936), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 194/523 (37%), Positives = 293/523 (56%), Gaps = 46/523 (8%)

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKA----RDLFLAMPEKNSVSW------------- 104
           F ++P +D  SW  +I+G+ Q    A+A     D+  A    N  ++             
Sbjct: 15  FDKMPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFTFTSLLKATGACGGC 74

Query: 105 ----------------------SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGY 142
                                 SA++  Y  C Q+D A+ +F     K+ V+W A+I+G+
Sbjct: 75  SIGEQMHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRLVSKNEVSWNALIAGF 134

Query: 143 MKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSP 202
            +      +  E  L     M   G      + SS+    + + +L+ G+ VH  + KS 
Sbjct: 135 AR-----KADGETTLMKFAEMQRNGFGATHFTYSSMFSAFARIGALEQGRWVHAHLIKSG 189

Query: 203 LCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFD 262
                     ++ MY K G + DA K+F  + ++D+VTWN M++  AQ+G G++A+  F+
Sbjct: 190 QKLTAFVGNTMLGMYAKSGSMVDARKVFDRMDKRDLVTWNTMLTALAQYGLGKEAVAHFE 249

Query: 263 KMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRA 322
           +++  G++ + ITF+++L AC+H GLV  G  YFD M+ DY +  + DHY   VDLLGRA
Sbjct: 250 EIRKCGIQLNQITFLSVLTACSHGGLVKEGKHYFD-MMKDYNVQPEIDHYVSFVDLLGRA 308

Query: 323 GKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQL 382
           G L EA+  + KMP +P  A++G LL ACR+HK   + ++AA ++F L+P +  G  V L
Sbjct: 309 GLLKEALIFVFKMPMEPTAAVWGALLGACRMHKNAKMGQYAADHVFELDPDDT-GPPVLL 367

Query: 383 ANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKL 442
            NIYA+  KW+D AR+R  MK   V K P  SW+++   VH F + D  HP+   I+   
Sbjct: 368 YNIYASTGKWNDAARVRKMMKATGVKKEPACSWVQIENSVHMFVADDDTHPKSGDIYRMW 427

Query: 443 KELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNL 502
           +E+  R+K AGYVP+    L  + E+ +E  L +HSEK+A+AF LI +P G  IR+ KN+
Sbjct: 428 EEINMRIKKAGYVPNTAHVLLHINEQERETKLKYHSEKIALAFALINMPAGASIRIMKNI 487

Query: 503 RVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           R+CGDCH A KY+S + KREI+VRDT RFHHF +G+CSCGDYW
Sbjct: 488 RICGDCHSAFKYVSKVFKREIVVRDTNRFHHFSEGSCSCGDYW 530



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 62/240 (25%), Positives = 115/240 (47%), Gaps = 7/240 (2%)

Query: 111 YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRP 170
           Y +CG +  A  +F   P + VV+WT +I+GY      +N    + + LL  M+    RP
Sbjct: 2   YCKCGAVSDARHVFDKMPSRDVVSWTYLIAGY-----AQNYMPAEAIGLLPDMLRARFRP 56

Query: 171 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 230
           N  + +S+L          +G+Q+H L  K    +D    + L+ MY +C  ++ A  +F
Sbjct: 57  NGFTFTSLLKATGACGGCSIGEQMHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVF 116

Query: 231 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVD 290
             +  K+ V+WNA+I+G+A+   GE  L  F +M+  G      T+ ++  A    G ++
Sbjct: 117 DRLVSKNEVSWNALIAGFARKADGETTLMKFAEMQRNGFGATHFTYSSMFSAFARIGALE 176

Query: 291 LGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSA 350
            G ++  + +   G          M+ +  ++G +V+A  +  +M  K     + T+L+A
Sbjct: 177 QG-RWVHAHLIKSGQKLTAFVGNTMLGMYAKSGSMVDARKVFDRMD-KRDLVTWNTMLTA 234



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 45/79 (56%)

Query: 216 MYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSIT 275
           MYCKCG + DA  +F ++  +DVV+W  +I+GYAQ+    +A+ L   M     +P+  T
Sbjct: 1   MYCKCGAVSDARHVFDKMPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFT 60

Query: 276 FVALLLACNHAGLVDLGIQ 294
           F +LL A    G   +G Q
Sbjct: 61  FTSLLKATGACGGCSIGEQ 79


>gi|57899529|dbj|BAD87043.1| vegetative storage protein-like [Oryza sativa Japonica Group]
          Length = 698

 Score =  365 bits (936), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 195/524 (37%), Positives = 296/524 (56%), Gaps = 46/524 (8%)

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK---------------------- 99
           F  +P ++  +W+ +I GFV    M +A  LF AM  +                      
Sbjct: 181 FDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDH 240

Query: 100 ------------------NSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISG 141
                             +  + ++++S Y + G +D+A+ LF    VK  V+++A++SG
Sbjct: 241 LRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSG 300

Query: 142 YMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKS 201
           Y     V+N  AE+   + + M    + P+A+++ S++  CSHL++LQ G+  H  V   
Sbjct: 301 Y-----VQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIR 355

Query: 202 PLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLF 261
            L  +T+    LI MY KCG ++ + ++F  +  +D+V+WN MI+GY  HG G++A  LF
Sbjct: 356 GLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALF 415

Query: 262 DKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGR 321
            +M + G  PD +TF+ LL AC+H+GLV  G  +F  M + YG+  + +HY CMVDLL R
Sbjct: 416 LEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYICMVDLLSR 475

Query: 322 AGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQ 381
            G L EA + I+ MP +    ++  LL ACRV+K +DL +  +  +  L P    G +V 
Sbjct: 476 GGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELGP-EGTGNFVL 534

Query: 382 LANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEK 441
           L+NIY+A  ++D+ A +R+  K     K PG SWIE+   +H F  GD+ HP+   I+ +
Sbjct: 535 LSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEINGSLHAFVGGDQSHPQSPEIYRE 594

Query: 442 LKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKN 501
           L  +   +K  GY PD  F L  + EE KE+ L+ HSEKLAIA+G++ +     I V KN
Sbjct: 595 LDNILVGIKKLGYQPDTSFVLQDLEEEEKEKALICHSEKLAIAYGILSLSEDKTIFVTKN 654

Query: 502 LRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           LRVCGDCH   K+IS +++R IIVRD  RFHHFK+G CSCGD+W
Sbjct: 655 LRVCGDCHTVIKHISLVKRRAIIVRDANRFHHFKNGQCSCGDFW 698



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 70/248 (28%), Positives = 118/248 (47%), Gaps = 21/248 (8%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI 164
           +A++  Y++C  L  A  +F   P + +VAW AM++GY   G   ++ A     LL M +
Sbjct: 49  TALLDMYVKCACLPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAH----LLSMQM 104

Query: 165 GLG-IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVF----------KSPLCKDTTALTPL 213
            +  +RPNAS+L ++L   +   +L  G  VH              KS L       T L
Sbjct: 105 QMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTAL 164

Query: 214 ISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEG---MK 270
           + MY KCG L  A ++F  +  ++ VTW+A+I G+    +  +A  LF  M  +G   + 
Sbjct: 165 LDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLS 224

Query: 271 PDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVD 330
           P SI   + L AC     + +G Q   +++   G+ A       ++ +  +AG + +A+ 
Sbjct: 225 PTSIA--SALRACASLDHLRMGEQ-LHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIA 281

Query: 331 LIKKMPFK 338
           L  +M  K
Sbjct: 282 LFDEMAVK 289



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 67/264 (25%), Positives = 117/264 (44%), Gaps = 33/264 (12%)

Query: 168 IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC 227
           + PN  +    L  CS L+    G+ +H+    + L  D    T L+ MY KC  L DA 
Sbjct: 6   VAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAA 65

Query: 228 KLFLEIQRKDVVTWNAMISGYAQHGKGEKALR--LFDKMKDEGMKPDSITFVALLLACNH 285
            +F  +  +D+V WNAM++GYA HG    A+   L  +M+   ++P++ T VALL     
Sbjct: 66  HIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQ 125

Query: 286 AGLVDLGIQYFDSMVNDYGIAA--KPDHY------------TCMVDLLGRAGKLVEAVDL 331
            G +  G     + V+ Y I A   P+              T ++D+  + G L+ A  +
Sbjct: 126 QGALAQG-----TSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRV 180

Query: 332 IKKMPFKPQ---PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAA 388
              MP + +    A+ G  +   R+ +   L  F AM    L       C++   +I +A
Sbjct: 181 FDAMPARNEVTWSALIGGFVLCSRMTQAFLL--FKAMLAQGL-------CFLSPTSIASA 231

Query: 389 MKKWDDVARIRLSMKENNVVKMPG 412
           ++    +  +R+  + + ++   G
Sbjct: 232 LRACASLDHLRMGEQLHALLAKSG 255


>gi|115458888|ref|NP_001053044.1| Os04g0469400 [Oryza sativa Japonica Group]
 gi|113564615|dbj|BAF14958.1| Os04g0469400, partial [Oryza sativa Japonica Group]
          Length = 401

 Score =  365 bits (936), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 178/400 (44%), Positives = 249/400 (62%), Gaps = 2/400 (0%)

Query: 147 YVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKD 206
           + EN    + + L   M+  GI+P++ +L  +L   + LSSL  GK++H  + +     +
Sbjct: 3   FAENGLLHEAVALFGKMLNAGIQPDSVALVGILGAIAGLSSLTKGKEIHGFLIRGKFPVE 62

Query: 207 TTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKD 266
              ++ L+ MY  CG +  A K+F E + KDVV W AMI+    HG G++A+ +F +M +
Sbjct: 63  GAVVSSLVDMYSGCGSMNYALKVFDEAKCKDVVLWTAMINATGMHGHGKQAIYIFKRMLE 122

Query: 267 EGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLV 326
            G+ PD ++F+ALL AC+H+ LVD G  Y D MV+ Y +    +HY C+VDLLGR+G+  
Sbjct: 123 TGVSPDHVSFLALLYACSHSKLVDEGKFYLDMMVSKYKLQPWQEHYACVVDLLGRSGQTE 182

Query: 327 EAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIY 386
           EA   IK MP +P+  ++  LL ACR+HK  +LA  A   L  L P N  G YV ++N++
Sbjct: 183 EAYKFIKSMPLEPKSVVWCALLGACRIHKNHELAMIATDKLLELEPDN-PGNYVLVSNVF 241

Query: 387 AAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELE 446
           A M KW++V  IR  M E  + K P  SWIE+G  VH F + D  H +  +IH KL E+ 
Sbjct: 242 AEMGKWNNVKEIRTKMTEQGLRKDPACSWIEIGNTVHTFTARDHSHRDSQAIHLKLAEIT 301

Query: 447 KRMKLAG-YVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVC 505
           ++++  G YV D  F LH V EE K  LL  HSE+LAI+FGLI    GTP+R+ KNLRVC
Sbjct: 302 EKLRREGQYVEDTSFVLHDVSEEEKIDLLHRHSERLAISFGLISTASGTPLRIAKNLRVC 361

Query: 506 GDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           GDCH  TK +S + +REI+VRD  RFHHF  GTCSCGD+W
Sbjct: 362 GDCHEFTKLVSKLFEREIVVRDANRFHHFSGGTCSCGDFW 401



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 83/172 (48%), Gaps = 11/172 (6%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI 164
           S+++  Y  CG ++ A+++F  A  K VV WTAMI+     G+      +  + + + M+
Sbjct: 67  SSLVDMYSGCGSMNYALKVFDEAKCKDVVLWTAMINATGMHGH-----GKQAIYIFKRML 121

Query: 165 GLGIRPNASSLSSVLLGCSHLSSLQLGK-QVHQLVFKSPLCKDTTALTPLISMYCKCGDL 223
             G+ P+  S  ++L  CSH   +  GK  +  +V K  L         ++ +  + G  
Sbjct: 122 ETGVSPDHVSFLALLYACSHSKLVDEGKFYLDMMVSKYKLQPWQEHYACVVDLLGRSGQT 181

Query: 224 EDACKLF--LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDS 273
           E+A K    + ++ K VV W A++     H   E A+   DK+ +  ++PD+
Sbjct: 182 EEAYKFIKSMPLEPKSVV-WCALLGACRIHKNHELAMIATDKLLE--LEPDN 230


>gi|302780547|ref|XP_002972048.1| hypothetical protein SELMODRAFT_96927 [Selaginella moellendorffii]
 gi|300160347|gb|EFJ26965.1| hypothetical protein SELMODRAFT_96927 [Selaginella moellendorffii]
          Length = 606

 Score =  365 bits (936), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 193/536 (36%), Positives = 307/536 (57%), Gaps = 16/536 (2%)

Query: 19  QRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK----DTASWN 74
           Q G ++ A  +F + P P+V S+ +++S  L N+    AA   ++ + ++    D    +
Sbjct: 78  QCGDVESAHAVFARQPDPNVFSWMMLISACLRNARPR-AALGHYRAMQLRGCHPDAHVVS 136

Query: 75  TMISGFVQKKNMAKARDLFLAMPE----KNSVSWSAMISGYIECGQLDKAVELFKVAPVK 130
            +        N+   R +   +       + V  +++++ Y  CG +D     F   P +
Sbjct: 137 AIFCAVADTANLELGRSITAPLASTAMLHDPVVANSLLNMYRRCGGMDDFERAFWAMPSR 196

Query: 131 SVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIR-PNASSLSSVLLGCSHLSSLQ 189
             V+WT M++G ++ G   ++     L+LLR+M   G R  +A + ++++  C +LS++ 
Sbjct: 197 DEVSWTTMLAGRIQCGREASA-----LELLRVMDQDGFRITSALTFATLVDACGNLSAIA 251

Query: 190 LGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYA 249
            G+ +H  +  S +C D    T L++MY KCG +++A +LF +    + +T+++M++ YA
Sbjct: 252 QGRHLHDRIITSGVCIDVVLHTALLNMYAKCGRVDEARELFDQTLEPNNITFSSMVAAYA 311

Query: 250 QHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKP 309
           ++G    AL+LF  M+ +G KPDS+TF  +L AC+H G VD    YF ++  D GI    
Sbjct: 312 RNGHFGDALKLFWSMEQDGYKPDSVTFTHVLYACSHGGFVDQAWHYFTTLEPDRGIPLVA 371

Query: 310 DHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFN 369
           +H+ C VDLL RAG L +A   + +MP  P    + +LL ACR+H+ +++   AA ++F 
Sbjct: 372 EHFGCAVDLLARAGWLADAEKFLNRMPIPPDSVSWMSLLQACRIHRNVEIGARAAEHVFR 431

Query: 370 LNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGD 429
           L P + AG Y  L+NIY+   KWD  A+++  M++  + K  G SWIE+     EF  GD
Sbjct: 432 LAP-HRAGPYSLLSNIYSDAGKWDMAAKVQKLMRDRGIKKPGGRSWIEINGKTSEFIVGD 490

Query: 430 RVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIK 489
             HP+LV I ++++ + K MK  GYVPD +  LH   EE KE +L FHSEKLAI  GLIK
Sbjct: 491 SWHPDLVQICQEIQRVSKVMKEHGYVPDTKQVLHDAEEEEKEDILYFHSEKLAIGLGLIK 550

Query: 490 VPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
            P  T I + KN+RVC DCH A K IS + +R+I++RD   FHH +DG CSC DYW
Sbjct: 551 TPPKTTISIVKNIRVCPDCHTAAKVISKVTERKIVIRDINLFHHMEDGNCSCRDYW 606



 Score = 98.2 bits (243), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 58/245 (23%), Positives = 119/245 (48%), Gaps = 8/245 (3%)

Query: 107 MISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGL 166
           ++  Y +CG ++ A  +F   P  +V +W  +IS  ++     N+     L   R M   
Sbjct: 72  LVQAYGQCGDVESAHAVFARQPDPNVFSWMMLISACLR-----NARPRAALGHYRAMQLR 126

Query: 167 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 226
           G  P+A  +S++    +  ++L+LG+ +   +  + +  D      L++MY +CG ++D 
Sbjct: 127 GCHPDAHVVSAIFCAVADTANLELGRSITAPLASTAMLHDPVVANSLLNMYRRCGGMDDF 186

Query: 227 CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDS-ITFVALLLACNH 285
            + F  +  +D V+W  M++G  Q G+   AL L   M  +G +  S +TF  L+ AC +
Sbjct: 187 ERAFWAMPSRDEVSWTTMLAGRIQCGREASALELLRVMDQDGFRITSALTFATLVDACGN 246

Query: 286 AGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFG 345
              +  G    D ++   G+      +T ++++  + G++ EA +L  +   +P    F 
Sbjct: 247 LSAIAQGRHLHDRIITS-GVCIDVVLHTALLNMYAKCGRVDEARELFDQT-LEPNNITFS 304

Query: 346 TLLSA 350
           ++++A
Sbjct: 305 SMVAA 309



 Score = 47.0 bits (110), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 28/115 (24%), Positives = 51/115 (44%)

Query: 178 VLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKD 237
           +L  C+   +L    Q+H L+  +   +       L+  Y +CGD+E A  +F      +
Sbjct: 37  LLHRCAAERALPQAHQLHALMLATGALRSRYLSNKLVQAYGQCGDVESAHAVFARQPDPN 96

Query: 238 VVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 292
           V +W  +IS   ++ +   AL  +  M+  G  PD+    A+  A      ++LG
Sbjct: 97  VFSWMMLISACLRNARPRAALGHYRAMQLRGCHPDAHVVSAIFCAVADTANLELG 151


>gi|449443909|ref|XP_004139718.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 642

 Score =  365 bits (936), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 180/446 (40%), Positives = 267/446 (59%), Gaps = 6/446 (1%)

Query: 100 NSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKL 159
           N V W+ MI G +  G +  A  LF   P +SVV+W  MISGY + G+       + + L
Sbjct: 203 NVVLWNIMIDGQVRLGDIKSAKNLFDEMPQRSVVSWNVMISGYAQNGHFI-----EAINL 257

Query: 160 LRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCK 219
            + M    I PN  +L SVL   + + +L+LGK +H    K+ +  D    + L+ MY K
Sbjct: 258 FQEMQSSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNKIEIDDVLGSALVDMYSK 317

Query: 220 CGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVAL 279
           CG +++A ++F  + +++ +TW+A+I  +A HG+ E A+  F  M   G+ P+ + ++ +
Sbjct: 318 CGSIDEALQVFETLPKRNAITWSAIIGAFAMHGRAEDAIIHFHLMGKAGVTPNDVAYIGI 377

Query: 280 LLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKP 339
           L AC+HAGLV+ G  +F  MV   G+  + +HY CMVDLLGRAG L EA +LI+ MP +P
Sbjct: 378 LSACSHAGLVEEGRSFFSHMVKVVGLQPRIEHYGCMVDLLGRAGHLEEAEELIRNMPIEP 437

Query: 340 QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIR 399
              I+  LL AC++HK L + E  A  L  L P + +G YV L+N+YA++  W+ VAR+R
Sbjct: 438 DDVIWKALLGACKMHKNLKMGERVAETLMELAPHD-SGSYVALSNLYASLGNWEAVARVR 496

Query: 400 LSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLE 459
           L MK  ++ K PG SWIE+  ++HEF   D  H +   I   L E+  +++  GY P+  
Sbjct: 497 LKMKGMDIRKDPGCSWIEIHGIIHEFLVEDDSHSKAKEIQAMLGEMSMKLRSNGYRPNTL 556

Query: 460 FALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIE 519
                  E+ + + L +HSEK+A+AFGLI      P+++ KNLR+C DCH + K IS I 
Sbjct: 557 EVFLNTDEQERARALQYHSEKIAVAFGLISTAPQHPLKIVKNLRICEDCHASLKLISLIY 616

Query: 520 KREIIVRDTTRFHHFKDGTCSCGDYW 545
           KR+IIVRD  RFH F+ G+CSC DYW
Sbjct: 617 KRQIIVRDRKRFHQFEHGSCSCMDYW 642



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 75/310 (24%), Positives = 132/310 (42%), Gaps = 54/310 (17%)

Query: 117 LDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLG-IRPNASSL 175
           +D A  +F+  P  +   W  ++    +    +     + L L   M+  G ++PN  + 
Sbjct: 68  IDYARAVFRQMPEPNCFCWNTILRVLAETN--DEHLQSEALMLFSAMLCDGRVKPNRFTF 125

Query: 176 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA----CK--- 228
            SVL  C+  S L+ GKQ+H L+ K    +D   ++ L+ MY  C  +EDA    CK   
Sbjct: 126 PSVLKACARASRLREGKQIHGLIVKFGFHEDEFVISNLVRMYVMCAVMEDAYSLFCKNVV 185

Query: 229 ----------------------------------------LFLEIQRKDVVTWNAMISGY 248
                                                   LF E+ ++ VV+WN MISGY
Sbjct: 186 DFDGSCQMELDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMPQRSVVSWNVMISGY 245

Query: 249 AQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK 308
           AQ+G   +A+ LF +M+   + P+ +T V++L A    G ++LG ++         I   
Sbjct: 246 AQNGHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELG-KWIHLYAGKNKIEID 304

Query: 309 PDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLD--LAEFAAMN 366
               + +VD+  + G + EA+ + + +P K     +  ++ A  +H R +  +  F  M 
Sbjct: 305 DVLGSALVDMYSKCGSIDEALQVFETLP-KRNAITWSAIIGAFAMHGRAEDAIIHFHLMG 363

Query: 367 LFNLNPANAA 376
              + P + A
Sbjct: 364 KAGVTPNDVA 373



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 77/303 (25%), Positives = 132/303 (43%), Gaps = 68/303 (22%)

Query: 28  ELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMA 87
           EL  +    +VV +NIM+    +   D+ +A + F  +P +   SWN MISG+ Q  +  
Sbjct: 194 ELDKRKQDGNVVLWNIMIDG-QVRLGDIKSAKNLFDEMPQRSVVSWNVMISGYAQNGHFI 252

Query: 88  KARDLFLAMPEKN---------------------------------------SVSWSAMI 108
           +A +LF  M   N                                        V  SA++
Sbjct: 253 EAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNKIEIDDVLGSALV 312

Query: 109 SGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGI 168
             Y +CG +D+A+++F+  P ++ + W+A+I  +   G      AED +    +M   G+
Sbjct: 313 DMYSKCGSIDEALQVFETLPKRNAITWSAIIGAFAMHGR-----AEDAIIHFHLMGKAGV 367

Query: 169 RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMY-C------KCG 221
            PN  +   +L  CSH   ++ G+      F S + K    L P I  Y C      + G
Sbjct: 368 TPNDVAYIGILSACSHAGLVEEGRS-----FFSHMVK-VVGLQPRIEHYGCMVDLLGRAG 421

Query: 222 DLEDACKLF--LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMK---PDSITF 276
            LE+A +L   + I+  DV+ W A++     H    K L++ +++ +  M+    DS ++
Sbjct: 422 HLEEAEELIRNMPIEPDDVI-WKALLGACKMH----KNLKMGERVAETLMELAPHDSGSY 476

Query: 277 VAL 279
           VAL
Sbjct: 477 VAL 479


>gi|357436955|ref|XP_003588753.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477801|gb|AES59004.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 600

 Score =  365 bits (936), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 179/426 (42%), Positives = 263/426 (61%), Gaps = 6/426 (1%)

Query: 120 AVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVL 179
           A ++F  +P    V W+AMI+G+++ G      +   + L R M  +G+ P+  ++ SVL
Sbjct: 181 AEKVFDDSPKMDTVTWSAMIAGFVRLG-----CSSRAVDLFREMQVMGVCPDEITMVSVL 235

Query: 180 LGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVV 239
             C+ L +L+LGK V   V K  + K       LI M+ KCG+++ A KLF ++  + +V
Sbjct: 236 SACADLGALELGKWVESYVEKKNIPKSVELCNALIDMFAKCGNVDKAIKLFRQMDSRTIV 295

Query: 240 TWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSM 299
           +W ++I+G A HG+G  A+ LFD+M + G+ PD + F+ +L AC+H+GLVD G  YF SM
Sbjct: 296 SWTSVIAGLAMHGRGLDAVSLFDEMVENGITPDDVAFIGVLSACSHSGLVDKGRYYFGSM 355

Query: 300 VNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDL 359
             ++ I  K +HY CMVDLL R G + EA + ++KMPF+P   I+ T+++AC     L L
Sbjct: 356 ERNFSIVPKVEHYGCMVDLLCRGGFVKEAFEFVQKMPFEPNQIIWRTIITACHATGELKL 415

Query: 360 AEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVG 419
            E  +  L    P + +  YV L+NIYA +++W+   ++R  M    + K+PG + IEV 
Sbjct: 416 GESISKELIKSEPMHESN-YVLLSNIYAKLRQWEKKTKVREMMDMRGMKKVPGSTMIEVN 474

Query: 420 TVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSE 479
             ++EF +GD+ H +   I+E + E+ + +K AGYVP     L  + EE KE  L  HSE
Sbjct: 475 NEMYEFVAGDKSHDQYKEIYEMVDEMGREIKKAGYVPTTSQVLLDIDEEDKEDALYRHSE 534

Query: 480 KLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTC 539
           KLAIAF L+  P GT IR+ KNLRVC DCH ATK+IS +  REI+VRD  RFHHFK+G C
Sbjct: 535 KLAIAFALLNTPPGTSIRIVKNLRVCEDCHSATKFISKVYNREIVVRDRNRFHHFKNGLC 594

Query: 540 SCGDYW 545
           SC D+W
Sbjct: 595 SCRDFW 600



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 62/271 (22%), Positives = 125/271 (46%), Gaps = 36/271 (13%)

Query: 6   TVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRL 65
           TV W++++AGF +  G    A +LF ++    V    I +  +L    D+ A        
Sbjct: 193 TVTWSAMIAGFVRL-GCSSRAVDLFREMQVMGVCPDEITMVSVLSACADLGAL------- 244

Query: 66  PIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFK 125
              +   W   +  +V+KKN+ K+ +L            +A+I  + +CG +DKA++LF+
Sbjct: 245 ---ELGKW---VESYVEKKNIPKSVEL-----------CNALIDMFAKCGNVDKAIKLFR 287

Query: 126 VAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHL 185
               +++V+WT++I+G    G        D + L   M+  GI P+  +   VL  CSH 
Sbjct: 288 QMDSRTIVSWTSVIAGLAMHGR-----GLDAVSLFDEMVENGITPDDVAFIGVLSACSHS 342

Query: 186 SSLQLGKQVHQLVFKS-PLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ-RKDVVTWNA 243
             +  G+     + ++  +         ++ + C+ G +++A +   ++    + + W  
Sbjct: 343 GLVDKGRYYFGSMERNFSIVPKVEHYGCMVDLLCRGGFVKEAFEFVQKMPFEPNQIIWRT 402

Query: 244 MISGYAQHGKGEKALRLFDKMKDEGMKPDSI 274
           +I+  A H  GE  L+L + +  E +K + +
Sbjct: 403 IIT--ACHATGE--LKLGESISKELIKSEPM 429


>gi|20146226|dbj|BAB89008.1| PPR repeat protein-like [Oryza sativa Japonica Group]
 gi|125573391|gb|EAZ14906.1| hypothetical protein OsJ_04836 [Oryza sativa Japonica Group]
          Length = 785

 Score =  364 bits (935), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 197/541 (36%), Positives = 303/541 (56%), Gaps = 28/541 (5%)

Query: 19  QRGKLKDAQELFDKIPQPDVVSYNIMLS--C---ILLNSDDVVAAFDFFQRLPIKDTASW 73
           ++G L +A  LF  + +P+VV +N M++  C    ++  +    A   +  +  +     
Sbjct: 259 KKGALVEAAALFRSVQEPNVVMFNTMIAGFCRTETVIGKEVASEALTLYSEVQSRGMQPT 318

Query: 74  NTMISGFVQKKNMAKARDLFLAMP--------EKNSVSWSAMISGYIECGQLDKAVELFK 125
               S  ++  N+A   +    +         +++    SA+I  Y   G ++     F+
Sbjct: 319 EFTFSSVLRACNLAGYLEFGKQIHGQVIKYTFQEDDFIGSALIDLYFNSGCMEDGFRCFR 378

Query: 126 VAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHL 185
            +P   +V WTAM+SG      V+N   E  L L    +G G++P+  ++SSV+  C+ L
Sbjct: 379 SSPKHDIVTWTAMVSGC-----VQNELHEKALSLFHESLGAGLKPDLFTISSVMNACASL 433

Query: 186 SSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMI 245
           +  + G+Q+     KS   + T      + MY + GD++ A + F E++  DVV+W+A+I
Sbjct: 434 AVARAGEQIQCFATKSGFDRFTVMGNSCVHMYARSGDVDAATRRFQEMESHDVVSWSAVI 493

Query: 246 SGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGI 305
           S +AQHG    AL  FD+M D  + P+ ITF+ +L AC+H GLVD G++Y+++M  DYG+
Sbjct: 494 SCHAQHGCARDALHFFDEMVDAKVVPNEITFLGVLTACSHGGLVDEGLRYYETMTKDYGL 553

Query: 306 AAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAM 365
           +    H TC+VDLLGRAG+L +A   I    F   P I+ +LL++CR+H+ L+  +  A 
Sbjct: 554 SPTIKHCTCVVDLLGRAGRLADAEAFISNSIFHADPVIWRSLLASCRIHRDLERGQLVAN 613

Query: 366 NLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEF 425
            +  L P ++A  YV L N+Y    +    ++ R  MK+  V K PG SWIE+   VH F
Sbjct: 614 RIMELEPTSSAS-YVILYNMYLDAGELSLASKTRDLMKQRGVKKEPGLSWIELKCGVHSF 672

Query: 426 RSGDRVHPELVSIHEKLKELEKRM-KLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIA 484
            +GD+ HPE  +I+ KL+E+  R+ KLA    D E +      + ++ L+  HSEKLA+A
Sbjct: 673 VAGDKSHPESSAIYTKLEEMLSRIEKLA--TTDTEIS------KREQNLMNCHSEKLAVA 724

Query: 485 FGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDY 544
            G+I +P   PIRV KNLRVC DCH   K IS  E REII+RD  RFHHF+DG+CSC DY
Sbjct: 725 LGMIHLPQSAPIRVMKNLRVCRDCHSTMKLISKSENREIILRDPIRFHHFRDGSCSCADY 784

Query: 545 W 545
           W
Sbjct: 785 W 785



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 95/351 (27%), Positives = 158/351 (45%), Gaps = 42/351 (11%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNS--DDVVAAFDFFQRLPI 67
           NS+++ ++K  G++ +A+ +FD   + D VS+N ++S  +     +++V  F   +R  +
Sbjct: 148 NSLVSMYSKC-GEMGEARRVFDVAEERDDVSWNSLVSGYVRAGAREEMVRVFAMMRRGGM 206

Query: 68  ------------------KDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMIS 109
                               T      + G V K  +    D+FL          SAMI 
Sbjct: 207 GLNSFALGSVIKCCSGRGDGTMDIAEAVHGCVIKAGLDS--DVFLV---------SAMID 255

Query: 110 GYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYV-ENSWAEDGLKLLRMMIGLGI 168
            Y + G L +A  LF+     +VV +  MI+G+ +   V     A + L L   +   G+
Sbjct: 256 MYAKKGALVEAAALFRSVQEPNVVMFNTMIAGFCRTETVIGKEVASEALTLYSEVQSRGM 315

Query: 169 RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK 228
           +P   + SSVL  C+    L+ GKQ+H  V K    +D    + LI +Y   G +ED  +
Sbjct: 316 QPTEFTFSSVLRACNLAGYLEFGKQIHGQVIKYTFQEDDFIGSALIDLYFNSGCMEDGFR 375

Query: 229 LFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGL 288
            F    + D+VTW AM+SG  Q+   EKAL LF +    G+KPD  T  +++ AC    +
Sbjct: 376 CFRSSPKHDIVTWTAMVSGCVQNELHEKALSLFHESLGAGLKPDLFTISSVMNACASLAV 435

Query: 289 VDLGIQYFDSMVNDYGIAAKPDHYTCM----VDLLGRAGKLVEAVDLIKKM 335
              G Q     +  +   +  D +T M    V +  R+G +  A    ++M
Sbjct: 436 ARAGEQ-----IQCFATKSGFDRFTVMGNSCVHMYARSGDVDAATRRFQEM 481



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 65/251 (25%), Positives = 119/251 (47%), Gaps = 8/251 (3%)

Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI 164
           + +++ Y   G    A  L    P ++ V++  +I  Y + G    S     L+ L    
Sbjct: 47  NTLLAAYCRLGGPLPARRLLDEMPRRNAVSFNLLIDAYSREGLAPLS-----LETLARAR 101

Query: 165 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 224
             G+  +  S ++ L  CS    L+ G+ VH L     L         L+SMY KCG++ 
Sbjct: 102 RAGVDVDRFSYAAALAACSRAGHLRAGRAVHALAILDGLSSGVFVSNSLVSMYSKCGEMG 161

Query: 225 DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 284
           +A ++F   + +D V+WN+++SGY + G  E+ +R+F  M+  GM  +S    +++  C+
Sbjct: 162 EARRVFDVAEERDDVSWNSLVSGYVRAGAREEMVRVFAMMRRGGMGLNSFALGSVIKCCS 221

Query: 285 HAGLVDLGI-QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAI 343
             G   + I +     V   G+ +     + M+D+  + G LVEA  L + +  +P   +
Sbjct: 222 GRGDGTMDIAEAVHGCVIKAGLDSDVFLVSAMIDMYAKKGALVEAAALFRSVQ-EPNVVM 280

Query: 344 FGTLLSA-CRV 353
           F T+++  CR 
Sbjct: 281 FNTMIAGFCRT 291


>gi|356534396|ref|XP_003535741.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g04780-like [Glycine max]
          Length = 632

 Score =  364 bits (935), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 187/458 (40%), Positives = 279/458 (60%), Gaps = 14/458 (3%)

Query: 95  AMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAE 154
           A  + N    +A++  Y +C  +  A ++F+  P K+ V W++M++GY     V+N + +
Sbjct: 180 AAIDSNCFVXTALLHVYAKCSSIKDASQMFESMPEKNAVTWSSMMAGY-----VQNGFHD 234

Query: 155 DGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLI 214
           + L L      +G   +  ++SS +  C+ L++L  GKQVH +  KS    +    + LI
Sbjct: 235 EALLLFHNAQLMGFDQDPFNISSAVSACAGLATLVEGKQVHAMSHKSGFGSNIYVASSLI 294

Query: 215 SMYCKCGDLEDACKLFLE-IQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDS 273
            MY KCG + +A  +F   ++ + +V WNAMISG+A+H   ++A+ LF+KM+  G  PD 
Sbjct: 295 DMYAKCGCIREAYLVFEGFVEVRSIVLWNAMISGFARHALAQEAMILFEKMQQRGFFPDD 354

Query: 274 ITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIK 333
           +T+V++L AC+H GL + G +YFD MV  + ++    HY+CM+D+LGRAG + +A DLI 
Sbjct: 355 VTYVSVLNACSHMGLHEEGQKYFDLMVRQHNLSPSVLHYSCMIDILGRAGLVQKAYDLIG 414

Query: 334 KMPFKPQPAIFGT-------LLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIY 386
           +M F    +++G+       + ++CR++  ++ AE AA +LF + P NA G ++ LANIY
Sbjct: 415 RMSFNATSSMWGSVRGLSXLIKASCRIYGNIEFAEIAAKHLFEMEPNNA-GNHILLANIY 473

Query: 387 AAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELE 446
           AA KK D+VAR R  ++E +V K  G SWIE+   +H F  G+R HP++   + KL  L 
Sbjct: 474 AANKKSDEVARARKLLRETDVRKERGTSWIEIKNKIHSFTVGERNHPQIDDNYAKLDNLV 533

Query: 447 KRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCG 506
             +K   Y  D    LH V E  K  LL  HSEKLAI FGL+ +P   PIR+ KNLR+CG
Sbjct: 534 VELKKLNYKVDTNNDLHDVEESRKHMLLGHHSEKLAITFGLVCLPTEIPIRIIKNLRICG 593

Query: 507 DCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDY 544
           DCH   K +S    REIIVRDT RFHHFKDG CSCG++
Sbjct: 594 DCHTFMKLVSKFASREIIVRDTNRFHHFKDGLCSCGEF 631



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 60/233 (25%), Positives = 109/233 (46%), Gaps = 10/233 (4%)

Query: 98  EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGL 157
           E + ++ + +I+ Y +C  +    +      VKS++     I         +N+     L
Sbjct: 82  EMDILTSTMLINMYSKCSLVHSTRKKXDEMLVKSLILXNTRIGAL-----TQNAEDRKAL 136

Query: 158 KLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMY 217
           KLL  M       N  ++SSVL  C+   ++    Q+H    K+ +  +    T L+ +Y
Sbjct: 137 KLLIRMQREVTPFNEFTISSVLCNCAFKCAILECMQLHAFSIKAAIDSNCFVXTALLHVY 196

Query: 218 CKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFV 277
            KC  ++DA ++F  +  K+ VTW++M++GY Q+G  ++AL LF   +  G   D     
Sbjct: 197 AKCSSIKDASQMFESMPEKNAVTWSSMMAGYVQNGFHDEALLLFHNAQLMGFDQDPFNIS 256

Query: 278 ALLLACNHAGLVDL--GIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEA 328
           + + AC  AGL  L  G Q   +M +  G  +     + ++D+  + G + EA
Sbjct: 257 SAVSAC--AGLATLVEGKQ-VHAMSHKSGFGSNIYVASSLIDMYAKCGCIREA 306



 Score = 45.4 bits (106), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 50/111 (45%)

Query: 173 SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLE 232
           S+L  +L  C+   S   G+  H  + +  L  D    T LI+MY KC  +    K   E
Sbjct: 51  SNLHYLLQLCAKTGSSMGGRACHAQIIRIGLEMDILTSTMLINMYSKCSLVHSTRKKXDE 110

Query: 233 IQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC 283
           +  K ++  N  I    Q+ +  KAL+L  +M+ E    +  T  ++L  C
Sbjct: 111 MLVKSLILXNTRIGALTQNAEDRKALKLLIRMQREVTPFNEFTISSVLCNC 161


>gi|297743367|emb|CBI36234.3| unnamed protein product [Vitis vinifera]
          Length = 906

 Score =  364 bits (935), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 199/524 (37%), Positives = 303/524 (57%), Gaps = 54/524 (10%)

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM------PEKNSVS------------ 103
           F ++  KD  SW  MISG+ +     KA + +  M      P++ +++            
Sbjct: 354 FSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLL 413

Query: 104 ---------------------WSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGY 142
                                 +++I  Y +C  +DKA+E+F   P K+V++WT++I G 
Sbjct: 414 DKGIMLHEFADRTGLTSYVIVANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTSIILG- 472

Query: 143 MKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSP 202
           ++  Y     + + L   + MI L ++PN+ +L SVL  C+ + +L  GK++H    ++ 
Sbjct: 473 LRLNYR----SFEALFFFQQMI-LSLKPNSVTLVSVLSACARIGALSCGKEIHAHALRTG 527

Query: 203 LCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFD 262
           L  D      L+ MY +CG +E A   F   + KDV +WN +++GYAQ GKG  A+ LF 
Sbjct: 528 LGFDGFLPNALLDMYVRCGRMEPAWNQFNSCE-KDVASWNILLTGYAQQGKGGLAVELFH 586

Query: 263 KMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRA 322
           KM +  + PD ITF +LL AC+ +G+V  G++YF+SM + + IA    HY  +VDLLGRA
Sbjct: 587 KMIESDVNPDEITFTSLLCACSRSGMVTDGLEYFESMEHKFHIAPNLKHYASVVDLLGRA 646

Query: 323 GKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQL 382
           G+L +A + IKKMP  P PAI+G LL+ACR+++ ++L E AA ++F ++   + G Y+ L
Sbjct: 647 GRLEDAYEFIKKMPIDPDPAIWGALLNACRIYQNVELGELAAQHIFEMD-TKSVGYYILL 705

Query: 383 ANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKL 442
            N+YA   KWD+VAR+R  M+EN +   PG SW+EV   VH F +GD  HP++  I+  L
Sbjct: 706 CNLYADSGKWDEVARVRKIMRENRLTVDPGCSWVEVAGQVHAFLTGDDFHPQIKEINAVL 765

Query: 443 KELEKRMKLAGYVPDLEFALHAVGEEV---KEQLLLFHSEKLAIAFGLIKVPLGTPIRVF 499
           +   ++M+  G    L  +  +  +++   K ++   HSE+LAIAFGLI    GTPI V 
Sbjct: 766 EGFYEKMEATG----LSMSKDSRRDDIDASKAEIFCGHSERLAIAFGLINTVPGTPIWVT 821

Query: 500 KNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGD 543
           KNL +C +CH   K+IS + +R I VRDT +FHHFKDG CSCGD
Sbjct: 822 KNLYMCENCHNTVKFISKVVRRGISVRDTEQFHHFKDGVCSCGD 865



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 98/368 (26%), Positives = 187/368 (50%), Gaps = 21/368 (5%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRL---P 66
           N++L+ F +  G L +A  +F K+ + D+ S+N+++      +     A + + R+    
Sbjct: 133 NALLSMFVR-FGDLVEAWYVFGKMAERDLFSWNVLVGG-YAKAGYFDEALNLYHRMLWVG 190

Query: 67  IK-DTASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMISGYIECGQLDKAV 121
           I+ D  ++  ++       ++A+ R++ L +     E +    +A+I+ Y++CG +  A 
Sbjct: 191 IRPDVYTFPCVLRTCGGLPDLARGREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSAR 250

Query: 122 ELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLG 181
            +F   P +  ++W AMISGY      EN    +GL+L  MM    + P+  +++SV+  
Sbjct: 251 LVFDRMPRRDRISWNAMISGYF-----ENDVCLEGLRLFFMMREFFVDPDLMTMTSVISA 305

Query: 182 CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTW 241
           C  L   +LG++VH  V K+    + +    LI M+   G  ++A  +F +++ KD+V+W
Sbjct: 306 CEALGDERLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSW 365

Query: 242 NAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN 301
            AMISGY ++G  EKA+  +  M+ EG+ PD IT  ++L AC   GL+D GI       +
Sbjct: 366 TAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLLDKGIM-LHEFAD 424

Query: 302 DYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAE 361
             G+ +       ++D+  +   + +A+++  ++P K   +    +L       RL+   
Sbjct: 425 RTGLTSYVIVANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTSIILGL-----RLNYRS 479

Query: 362 FAAMNLFN 369
           F A+  F 
Sbjct: 480 FEALFFFQ 487



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 81/297 (27%), Positives = 137/297 (46%), Gaps = 46/297 (15%)

Query: 35  QPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFL 94
           + DV   N +++ + +   D+ +A   F R+P +D  SWN MISG+ +     +   LF 
Sbjct: 227 ESDVDVVNALIT-MYVKCGDIFSARLVFDRMPRRDRISWNAMISGYFENDVCLEGLRLFF 285

Query: 95  AMPE----KNSVSWSAMIS---------------GYI--------------------ECG 115
            M E     + ++ +++IS               GY+                      G
Sbjct: 286 MMREFFVDPDLMTMTSVISACEALGDERLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVG 345

Query: 116 QLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSL 175
             D+A  +F     K +V+WTAMISGY K     N   E  ++   +M   G+ P+  ++
Sbjct: 346 CWDEAEMVFSKMEFKDLVSWTAMISGYEK-----NGLPEKAVETYTIMEHEGVVPDEITI 400

Query: 176 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR 235
           +SVL  C+ L  L  G  +H+   ++ L         LI MY KC  ++ A ++F  I  
Sbjct: 401 ASVLSACAGLGLLDKGIMLHEFADRTGLTSYVIVANSLIDMYSKCRCIDKALEVFHRIPN 460

Query: 236 KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 292
           K+V++W ++I G   + +  +AL  F +M    +KP+S+T V++L AC   G +  G
Sbjct: 461 KNVISWTSIILGLRLNYRSFEALFFFQQMI-LSLKPNSVTLVSVLSACARIGALSCG 516


>gi|449461943|ref|XP_004148701.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic-like [Cucumis sativus]
 gi|449517215|ref|XP_004165641.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic-like [Cucumis sativus]
          Length = 706

 Score =  364 bits (934), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 196/570 (34%), Positives = 311/570 (54%), Gaps = 46/570 (8%)

Query: 15  GFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWN 74
           G    RG  +    + D   +PD    N +L  + +    ++ A   F  +P ++  SW 
Sbjct: 144 GLKSIRGVKRLCNYMVDNGFEPDQYMRNRVL-LMHVKCGMMIDACRLFDEMPARNAVSWG 202

Query: 75  TMISGFVQKKNMAKARDLFLAMPE------------------------------------ 98
           T+ISG+V   N  +A  LF+ M E                                    
Sbjct: 203 TIISGYVDSGNYVEAFRLFILMREEFYDCGPRTFATMIRASAGLEIIFPGRQLHSCAIKA 262

Query: 99  ---KNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAED 155
              ++     A+I  Y +CG L+ A  +F   P K++V W ++I+GY   GY     +E+
Sbjct: 263 GLGQDIFVSCALIDMYSKCGSLEDAHCVFDEMPDKTIVGWNSIIAGYALHGY-----SEE 317

Query: 156 GLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLIS 215
            L L   M   G++ +  + S ++  CS L+S+   KQVH  + ++    D  A T L+ 
Sbjct: 318 ALDLYHEMRDSGVKMDHFTFSIIIRICSRLASVARAKQVHASLVRNGFGLDVVANTALVD 377

Query: 216 MYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSIT 275
            Y K G ++DA  +F  +  +++++WNA+I+GY  HG GE+A+ +F+KM  EGM P+ +T
Sbjct: 378 FYSKWGKVDDARHVFDRMSCRNIISWNALIAGYGNHGHGEEAIDMFEKMLREGMMPNHVT 437

Query: 276 FVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335
           F+A+L AC+ +GL + G + F SM  D+ +  +  H+ CM++LLGR G L EA  LI+K 
Sbjct: 438 FLAVLSACSISGLFERGWEIFQSMTRDHKVKPRAMHFACMIELLGREGLLDEAYALIRKA 497

Query: 336 PFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDV 395
           PF+P   ++  LL ACRVH  L+L +FAA  L+ + P   +  Y+ L NIY +  K  + 
Sbjct: 498 PFQPTANMWAALLRACRVHGNLELGKFAAEKLYGMEPEKLSN-YIVLLNIYNSSGKLKEA 556

Query: 396 ARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYV 455
           A +  ++K   +  +P  SWIEV    H F SGD+ H ++  +  K+ EL   +   GYV
Sbjct: 557 ADVFQTLKRKGLRMLPACSWIEVNNQPHAFLSGDKHHVQIEKVVGKVDELMLNISKLGYV 616

Query: 456 PDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYI 515
           P+ +  +    +E +E++ ++HSEKLAIA+GL+     TP+++ ++ R+C DCH   K I
Sbjct: 617 PEEQNFMLPDVDENEEKIRMYHSEKLAIAYGLLNTLEKTPLQIVQSHRICSDCHSVIKLI 676

Query: 516 SAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           + I KREI++RD +RFHHF+DG+CSCGDYW
Sbjct: 677 AMITKREIVIRDASRFHHFRDGSCSCGDYW 706



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 79/172 (45%), Gaps = 1/172 (0%)

Query: 167 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 226
           G     S+  +++  C  L S++  K++   +  +    D      ++ M+ KCG + DA
Sbjct: 127 GFHVGYSTYDALINACIGLKSIRGVKRLCNYMVDNGFEPDQYMRNRVLLMHVKCGMMIDA 186

Query: 227 CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHA 286
           C+LF E+  ++ V+W  +ISGY   G   +A RLF  M++E       TF  ++ A    
Sbjct: 187 CRLFDEMPARNAVSWGTIISGYVDSGNYVEAFRLFILMREEFYDCGPRTFATMIRASAGL 246

Query: 287 GLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 338
            ++  G Q     +   G+         ++D+  + G L +A  +  +MP K
Sbjct: 247 EIIFPGRQLHSCAIKA-GLGQDIFVSCALIDMYSKCGSLEDAHCVFDEMPDK 297



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 64/303 (21%), Positives = 133/303 (43%), Gaps = 43/303 (14%)

Query: 4   KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQ 63
           KT V WNS++AG+A   G  ++A +L+ ++    V                     D F 
Sbjct: 297 KTIVGWNSIIAGYALH-GYSEEALDLYHEMRDSGV-------------------KMDHF- 335

Query: 64  RLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISGYIECGQLDK 119
                   +++ +I    +  ++A+A+ +  ++       + V+ +A++  Y + G++D 
Sbjct: 336 --------TFSIIIRICSRLASVARAKQVHASLVRNGFGLDVVANTALVDFYSKWGKVDD 387

Query: 120 AVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVL 179
           A  +F     +++++W A+I+GY   G+      E+ + +   M+  G+ PN  +  +VL
Sbjct: 388 ARHVFDRMSCRNIISWNALIAGYGNHGH-----GEEAIDMFEKMLREGMMPNHVTFLAVL 442

Query: 180 LGCSHLSSLQLGKQVHQLVFKSPLCKDTTA-LTPLISMYCKCGDLEDACKLFLEIQRKDV 238
             CS     + G ++ Q + +    K        +I +  + G L++A  L  +   +  
Sbjct: 443 SACSISGLFERGWEIFQSMTRDHKVKPRAMHFACMIELLGREGLLDEAYALIRKAPFQPT 502

Query: 239 VT-WNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSIT-FVALLLACNHAGLVDLGIQYF 296
              W A++     HG  E  L  F   K  GM+P+ ++ ++ LL   N +G +      F
Sbjct: 503 ANMWAALLRACRVHGNLE--LGKFAAEKLYGMEPEKLSNYIVLLNIYNSSGKLKEAADVF 560

Query: 297 DSM 299
            ++
Sbjct: 561 QTL 563


>gi|49333391|gb|AAT64030.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 805

 Score =  364 bits (934), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 192/547 (35%), Positives = 307/547 (56%), Gaps = 35/547 (6%)

Query: 7   VNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLN--SDDVVAAFDFFQR 64
           +N+++ L     + G L  A  +F+K+ + +VVS+  M++    +  SD  +      ++
Sbjct: 286 INFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGWSDGAIILLQQMEK 345

Query: 65  LPIK-DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVS----WSAMISGYIECGQLDK 119
             +K D  +  +++    +  ++   +D+   +   N  S     +A++  Y +CG ++ 
Sbjct: 346 EGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMASNLFVCNALMDMYAKCGSMEG 405

Query: 120 AVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVL 179
           A  +F    VK +++W  M+                            ++P++ +++ +L
Sbjct: 406 ANSVFSTMVVKDIISWNTMVGE--------------------------LKPDSRTMACIL 439

Query: 180 LGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVV 239
             C+ LS+L+ GK++H  + ++    D      L+ +Y KCG L  A  LF  I  KD+V
Sbjct: 440 PACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLV 499

Query: 240 TWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSM 299
           +W  MI+GY  HG G +A+  F++M+D G++PD ++F+++L AC+H+GL++ G ++F  M
Sbjct: 500 SWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIM 559

Query: 300 VNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDL 359
            ND+ I  K +HY CMVDLL R G L +A   I+ +P  P   I+G LL  CR++  ++L
Sbjct: 560 KNDFNIEPKLEHYACMVDLLSRTGNLSKAYKFIETLPIAPDATIWGALLCGCRIYHDIEL 619

Query: 360 AEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVG 419
           AE  A  +F L P N  G YV LANIYA  +K ++V R+R  + +  + K PG SWIE+ 
Sbjct: 620 AEKVAERVFELEPEN-TGYYVLLANIYAEAEKREEVKRMREKIGKKGLRKNPGCSWIEIK 678

Query: 420 TVVHEFRSGDR-VHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHS 478
             V+ F SG+   HP    I   LK++ ++MK  GY P  ++AL    E  KE  L  HS
Sbjct: 679 GRVNLFVSGNNSSHPHSKKIESLLKKMRRKMKEEGYFPKTKYALINADEMQKEMALCGHS 738

Query: 479 EKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGT 538
           EKLA+AFGL+ +P    IRV KNLRVCGDCH   K++S   +REI++RD+ RFHHFKDG 
Sbjct: 739 EKLAMAFGLLTLPPRKTIRVTKNLRVCGDCHEMAKFMSKETRREIVLRDSNRFHHFKDGY 798

Query: 539 CSCGDYW 545
           CSC  +W
Sbjct: 799 CSCRGFW 805



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 87/309 (28%), Positives = 149/309 (48%), Gaps = 39/309 (12%)

Query: 76  MISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKS---- 131
           ++S +    ++ + R +F  M +KN   W+ M+S Y + G   +++ LFK+   K     
Sbjct: 140 LVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGK 199

Query: 132 ----------------VVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSL 175
                           V++W +MISGY     V N   E GL + + M+ LGI  + +++
Sbjct: 200 RPESASELFDKLCDRDVISWNSMISGY-----VSNGLTERGLGIYKQMMYLGIDVDLATI 254

Query: 176 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR 235
            SVL+GC++  +L LGK VH L  KS   +       L+ MY KCGDL+ A ++F ++  
Sbjct: 255 ISVLVGCANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGE 314

Query: 236 KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQY 295
           ++VV+W +MI+GY + G  + A+ L  +M+ EG+K D +   ++L AC  +G +D G   
Sbjct: 315 RNVVSWTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDV 374

Query: 296 FDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-------------PFKPQPA 342
            D  +    +A+       ++D+  + G +  A  +   M               KP   
Sbjct: 375 HD-YIKANNMASNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMVGELKPDSR 433

Query: 343 IFGTLLSAC 351
               +L AC
Sbjct: 434 TMACILPAC 442



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 97/384 (25%), Positives = 166/384 (43%), Gaps = 85/384 (22%)

Query: 13  LAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLS------------CIL-------LNSD 53
           L  F    G LK+ + +FD + + +V  +N M+S            C+        +   
Sbjct: 140 LVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGK 199

Query: 54  DVVAAFDFFQRLPIKDTASWNTMISGFVQ-----------KKNMAKARDLFLA------M 96
              +A + F +L  +D  SWN+MISG+V            K+ M    D+ LA      +
Sbjct: 200 RPESASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLV 259

Query: 97  PEKNSVSWS----------------------AMISGYIECGQLDKAVELFKVAPVKSVVA 134
              NS + S                       ++  Y +CG LD A+ +F+    ++VV+
Sbjct: 260 GCANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVS 319

Query: 135 WTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQV 194
           WT+MI+GY + G     W++  + LL+ M   G++ +  +++S+L  C+   SL  GK V
Sbjct: 320 WTSMIAGYTRDG-----WSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDV 374

Query: 195 HQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKG 254
           H  +  + +  +      L+ MY KCG +E A  +F  +  KD+++WN M+        G
Sbjct: 375 HDYIKANNMASNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMV--------G 426

Query: 255 EKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTC 314
           E             +KPDS T   +L AC     ++ G +    ++ + G ++       
Sbjct: 427 E-------------LKPDSRTMACILPACASLSALERGKEIHGYILRN-GYSSDRHVANA 472

Query: 315 MVDLLGRAGKLVEAVDLIKKMPFK 338
           +VDL  + G L  A  L   +P K
Sbjct: 473 LVDLYVKCGVLGLARLLFDMIPSK 496



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 51/213 (23%), Positives = 90/213 (42%), Gaps = 52/213 (24%)

Query: 174 SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDL---------- 223
           +  SVL  C+ L SL  GK+VH ++  + +  D      L+S Y  CGDL          
Sbjct: 101 TYGSVLQLCAGLKSLTDGKKVHSIIKSNSVGVDEALGLKLVSFYATCGDLKEGRRVFDTM 160

Query: 224 -----------------------------------------EDACKLFLEIQRKDVVTWN 242
                                                    E A +LF ++  +DV++WN
Sbjct: 161 EKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESASELFDKLCDRDVISWN 220

Query: 243 AMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVND 302
           +MISGY  +G  E+ L ++ +M   G+  D  T +++L+ C ++G + LG +   S+   
Sbjct: 221 SMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLG-KAVHSLAIK 279

Query: 303 YGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335
                + +    ++D+  + G L  A+ + +KM
Sbjct: 280 SSFERRINFSNTLLDMYSKCGDLDGALRVFEKM 312


>gi|359479564|ref|XP_002274514.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 616

 Score =  364 bits (934), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 205/535 (38%), Positives = 310/535 (57%), Gaps = 29/535 (5%)

Query: 34  PQPDVVSYNIMLSCI------------LLNSDDVVAAFDFFQRL--PIKDTASW------ 73
           P   ++ Y  MLSC+            +L +   + AFD  +++   +  T  W      
Sbjct: 88  PVESLILYARMLSCLNYSSGVEFSIPSVLKACGKLLAFDEGRQVHGQVLKTHLWFDPFVG 147

Query: 74  NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVV 133
           N+M+  ++    +  AR +F  MP ++ VSW++MI+GY++ G+++ A ++F+    K VV
Sbjct: 148 NSMVRMYIDFGEIELARRVFDRMPNRDVVSWNSMIAGYLKAGEIELAKKVFETMSDKDVV 207

Query: 134 AWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ 193
            WT+MIS Y     V+N      L L R M+ LG+RP+  ++ SVL   + L  ++ GK 
Sbjct: 208 TWTSMISAY-----VQNRCPMKALDLFREMLSLGLRPDGPAIVSVLSAIADLGFVEEGKW 262

Query: 194 VHQLVFKSPLCKDTTAL-TPLISMYCKCGDLEDACKLFLEI-QRKDVVTWNAMISGYAQH 251
           +H  V  + +   +  + + LI MY KCG +E+A  +F  I  R+++  WN+MISG A H
Sbjct: 263 LHAYVSMNKIELSSGFIGSALIDMYSKCGYIENAYHVFRSISHRRNIGDWNSMISGLAIH 322

Query: 252 GKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDH 311
           G   +AL +F +M+   ++P+ ITF+ LL  C+H GLV+ G  YF+SM   Y I  +  H
Sbjct: 323 GLAREALDIFVEMERMDIEPNEITFLGLLSTCSHGGLVEEGQFYFESMHEKYKIVPRIQH 382

Query: 312 YTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLN 371
           Y CM+DL GRAG+L +A+ +I+ MPF+     +  +LSA   H  +++ + AA+    L 
Sbjct: 383 YGCMIDLFGRAGRLEDALGVIQNMPFEADLLAWKAILSASMKHGHIEIGKSAALRAIELA 442

Query: 372 PANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRV 431
           P +++  YV L+NIYA   +WDDVA+IRL M++  V K+ G S + V   VHEF  G  +
Sbjct: 443 PDDSSS-YVLLSNIYAKAGRWDDVAKIRLMMRQRGVKKIAGCSSMLVNGKVHEFLLGKEL 501

Query: 432 HPELV-SIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKV 490
                  +  K+ E+  R+KL GY PDL   L  + +E KE LL  HSEK+AIAFGLI +
Sbjct: 502 DSSYSGQVLAKIAEVVSRLKLQGYEPDLTQVLLDIEDEGKESLLNLHSEKMAIAFGLIHI 561

Query: 491 PLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
               PI + KNLRVC DCH   K +S +  R+II+RD  RFHHF++G CSC +YW
Sbjct: 562 NKSAPIHIVKNLRVCCDCHCFMKLVSKVYNRQIIMRDQNRFHHFENGCCSCNEYW 616



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 80/312 (25%), Positives = 138/312 (44%), Gaps = 70/312 (22%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G+++ A+ +FD++P  DVVS+N M++   L + ++  A   F+ +  KD  +W +MIS +
Sbjct: 158 GEIELARRVFDRMPNRDVVSWNSMIAG-YLKAGEIELAKKVFETMSDKDVVTWTSMISAY 216

Query: 81  VQKKNMAKARDLFLAM------PEKNSV----------------SW-------------- 104
           VQ +   KA DLF  M      P+  ++                 W              
Sbjct: 217 VQNRCPMKALDLFREMLSLGLRPDGPAIVSVLSAIADLGFVEEGKWLHAYVSMNKIELSS 276

Query: 105 ----SAMISGYIECGQLDKAVELFK-VAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKL 159
               SA+I  Y +CG ++ A  +F+ ++  +++  W +MISG    G      A + L +
Sbjct: 277 GFIGSALIDMYSKCGYIENAYHVFRSISHRRNIGDWNSMISGLAIHGL-----AREALDI 331

Query: 160 LRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTP------- 212
              M  + I PN  +   +L  CSH   ++ G    Q  F+S    +   + P       
Sbjct: 332 FVEMERMDIEPNEITFLGLLSTCSHGGLVEEG----QFYFES--MHEKYKIVPRIQHYGC 385

Query: 213 LISMYCKCGDLEDACKLFLEIQ-RKDVVTWNAMISGYAQHGKGE----KALRLFDKMKDE 267
           +I ++ + G LEDA  +   +    D++ W A++S   +HG  E     ALR  +   D 
Sbjct: 386 MIDLFGRAGRLEDALGVIQNMPFEADLLAWKAILSASMKHGHIEIGKSAALRAIELAPD- 444

Query: 268 GMKPDSITFVAL 279
               DS ++V L
Sbjct: 445 ----DSSSYVLL 452


>gi|302753382|ref|XP_002960115.1| hypothetical protein SELMODRAFT_70183 [Selaginella moellendorffii]
 gi|300171054|gb|EFJ37654.1| hypothetical protein SELMODRAFT_70183 [Selaginella moellendorffii]
          Length = 653

 Score =  364 bits (934), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 210/544 (38%), Positives = 294/544 (54%), Gaps = 16/544 (2%)

Query: 11  SVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRL----P 66
           SV A      G LKD++ LF  +   DVVS+N M++   L   D   AF  F R+     
Sbjct: 117 SVTAMIGAYCGSLKDSKSLFLTMDVKDVVSWNAMIAAYTLYGHDK-DAFSLFHRMCTLGH 175

Query: 67  IKDTASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMISGYIECGQLDKAVE 122
             D  ++++++      K +   R L + +     +++    + +IS Y  CG L+ A  
Sbjct: 176 TPDIYTFSSILGACASPKRLEDGRMLHVRITARGFDRDFAMQNNLISMYTRCGSLESARR 235

Query: 123 LFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGC 182
            F     K + AW  M++ Y +F        +D L L + M+  G  P+  + SSV+  C
Sbjct: 236 YFYSIEKKELGAWNTMLAAYAQF-----DKGKDALFLYKNMLLEGFTPDRFTFSSVVDSC 290

Query: 183 SHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWN 242
           + L +L+ GK +H+        KD    T L++MY KCG L DA K F  I  KDVV+W+
Sbjct: 291 ASLGALREGKFIHECSTSCGFEKDVILGTALVNMYAKCGSLADAKKSFDGISNKDVVSWS 350

Query: 243 AMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVND 302
           AMI+  AQHG  E+AL L   M  +G+  + +T  ++L AC+H G +  GI YF  +  D
Sbjct: 351 AMIAASAQHGHAEEALELSHLMNLQGIAQNEVTASSVLHACSHGGRLYEGIDYFMGLSQD 410

Query: 303 YGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEF 362
           +GI    ++    +DLLGRAG L EA  ++  MPFK       TLL  C+VH  +   + 
Sbjct: 411 FGIERDEENTVGFIDLLGRAGWLKEAEHVLHTMPFKVSFVALVTLLGGCKVHGDVRRGKA 470

Query: 363 AAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVV 422
               +  L P N  G YV L N+YAA  +WDDVA++R  M++  V +  G S IE    +
Sbjct: 471 FTKRIVALEPEN-PGSYVLLNNMYAAAGRWDDVAKLRRYMRKKGVKRQTGCSSIEYRDKI 529

Query: 423 HEFRSGDRVHPELVSIHEKLKELEKRMK-LAGYVPDLEFALHAVGEEVKEQLLLFHSEKL 481
           +EF  GD  +P  + I  +L+ L  RMK   GYVPD     H V ++ KE+LL FHSEK+
Sbjct: 530 YEFSVGDTSNPRNLEIRAELERLYSRMKEEEGYVPDTRDVFHDVSDDKKEELLKFHSEKM 589

Query: 482 AIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSC 541
           A+ FGLI  P G+ +R+ KNLRVC DCH   K  S I  R IIVRD TRFHHF+ G CSC
Sbjct: 590 AMGFGLITSPPGSTLRIIKNLRVCSDCHTVGKLASKITGRRIIVRDGTRFHHFEGGICSC 649

Query: 542 GDYW 545
           GDYW
Sbjct: 650 GDYW 653



 Score = 85.1 bits (209), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 64/203 (31%), Positives = 104/203 (51%), Gaps = 22/203 (10%)

Query: 89  ARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFK--VAPVKSVVAWT--AMISGYMK 144
           AR +F  + ++N+ SWS ++  Y++     +A+E++K  V    S+ A+T  ++++   K
Sbjct: 1   ARQVFDRIKQRNAFSWSILVECYVQNAMYQEALEVYKEMVREEISIDAYTLSSVLAACTK 60

Query: 145 FGYVENSWAEDGLKLLRMMIGLGIRPN---ASSLSSVLLGCSHLSSLQLGKQVHQLVFKS 201
              V     E+G  + R    LG   +   A+SL  +   C  L          + VF+S
Sbjct: 61  LLDV-----EEGRMVQRKAEELGFEKDVVVATSLIHLFAKCGCLEEA-------ESVFRS 108

Query: 202 -PLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRL 260
               +D  ++T +I  Y  CG L+D+  LFL +  KDVV+WNAMI+ Y  +G  + A  L
Sbjct: 109 MGAMRDIISVTAMIGAY--CGSLKDSKSLFLTMDVKDVVSWNAMIAAYTLYGHDKDAFSL 166

Query: 261 FDKMKDEGMKPDSITFVALLLAC 283
           F +M   G  PD  TF ++L AC
Sbjct: 167 FHRMCTLGHTPDIYTFSSILGAC 189



 Score = 39.3 bits (90), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 25/110 (22%), Positives = 53/110 (48%), Gaps = 1/110 (0%)

Query: 226 ACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNH 285
           A ++F  I++++  +W+ ++  Y Q+   ++AL ++ +M  E +  D+ T  ++L AC  
Sbjct: 1   ARQVFDRIKQRNAFSWSILVECYVQNAMYQEALEVYKEMVREEISIDAYTLSSVLAACTK 60

Query: 286 AGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335
              V+ G +       + G        T ++ L  + G L EA  + + M
Sbjct: 61  LLDVEEG-RMVQRKAEELGFEKDVVVATSLIHLFAKCGCLEEAESVFRSM 109


>gi|224137724|ref|XP_002322628.1| predicted protein [Populus trichocarpa]
 gi|222867258|gb|EEF04389.1| predicted protein [Populus trichocarpa]
          Length = 559

 Score =  364 bits (934), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 191/463 (41%), Positives = 289/463 (62%), Gaps = 12/463 (2%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
           M+ +  V+WN+V+A    Q G++++A+  FD++P+ DV+S+  M+   L  S  V  A  
Sbjct: 95  MHERNMVSWNAVIAALV-QCGRVEEARRRFDEMPKRDVISWTTMVMG-LARSGRVDEARK 152

Query: 61  FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
            F R+P ++  SWN M++G+ +   + +A DLF  MPE+N  SW+ MI+G+I+ G+L  A
Sbjct: 153 VFDRMPERNVVSWNAMVTGYAKNMRLDEAFDLFERMPERNLSSWNTMITGFIQNGELAWA 212

Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI-GLGIRPNASSLSSVL 179
            ++F   P K+VV+WT MI+GY++ G      +E  LK+   MI   G RPN  +  +VL
Sbjct: 213 RKVFNEMPEKNVVSWTTMITGYVQEGE-----SESALKVFVEMIKDGGARPNEGTFVNVL 267

Query: 180 LGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLE--IQRKD 237
             CS ++ L  G+QVH L+ KS     T   + L++MY KCG+L  A K+F +  I ++D
Sbjct: 268 GACSDMAGLGEGQQVHLLISKSVYQDRTFVASALLNMYSKCGELSIARKIFDDVVISQRD 327

Query: 238 VVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFD 297
           +V WN MI+ YA HG G +A+ LF+ M+  G KP+ +++V LL AC+HAGLVD G+ YFD
Sbjct: 328 LVLWNGMIAAYAHHGCGMEAIELFEDMQGLGFKPNDVSYVELLSACSHAGLVDEGLNYFD 387

Query: 298 SMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRL 357
            +  D  I  + DH+ C+VDL GRAG+L EA D IK++  K   +I+G LL+ C  H  L
Sbjct: 388 ELGRDNSIQLREDHHACLVDLCGRAGRLKEAYDFIKQLGTKASSSIWGGLLAGCNAHGDL 447

Query: 358 DLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIE 417
           ++ + AA  L   +P N AG Y+ L+NIYA+ +KW + +R+RL MKE  + K PG SWIE
Sbjct: 448 EIGQLAAKELEKEDPEN-AGTYLLLSNIYASGRKWREASRVRLKMKEKGLKKQPGCSWIE 506

Query: 418 VGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEF 460
           VG  VH F + D+ H +   I+  + ++   MK A +VP+ +F
Sbjct: 507 VGNRVHVFLARDKSHYQSNLIYSLVHDIHAEMK-AEHVPNNDF 548



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 111/388 (28%), Positives = 199/388 (51%), Gaps = 52/388 (13%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQ-PDVVSYNIMLSCILLNSDDVVAAF 59
           M+ +  V W +V++G+ K  G + DA+ LFD++    DVV++  MLS   +    +  A 
Sbjct: 1   MHERDVVTWTAVISGYIKC-GLIVDARRLFDRVDAIKDVVTWTAMLSG-YVRLKRIEEAE 58

Query: 60  DFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDK 119
             F+ +P+K+  SWNTMI G+ + + + KA ++F  M E+N VSW+A+I+  ++CG++++
Sbjct: 59  RLFEVMPVKNVVSWNTMIDGYGKNREVDKAIEVFERMHERNMVSWNAVIAALVQCGRVEE 118

Query: 120 AVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVL 179
           A   F   P + V++WT M+ G  + G V     ++  K+   M      P  + +S   
Sbjct: 119 ARRRFDEMPKRDVISWTTMVMGLARSGRV-----DEARKVFDRM------PERNVVSWNA 167

Query: 180 LGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVV 239
           +   +  +++L +     +F+    ++ ++   +I+ + + G+L  A K+F E+  K+VV
Sbjct: 168 MVTGYAKNMRLDEAFD--LFERMPERNLSSWNTMITGFIQNGELAWARKVFNEMPEKNVV 225

Query: 240 TWNAMISGYAQHGKGEKALRLFDKM-KDEGMKPDSITFVALLLACNHAGLVDLGIQ---- 294
           +W  MI+GY Q G+ E AL++F +M KD G +P+  TFV +L AC+    +  G Q    
Sbjct: 226 SWTTMITGYVQEGESESALKVFVEMIKDGGARPNEGTFVNVLGACSDMAGLGEGQQVHLL 285

Query: 295 -----YFD------SMVNDYG---------------IAAKPD--HYTCMVDLLGRAGKLV 326
                Y D      +++N Y                + ++ D   +  M+      G  +
Sbjct: 286 ISKSVYQDRTFVASALLNMYSKCGELSIARKIFDDVVISQRDLVLWNGMIAAYAHHGCGM 345

Query: 327 EAVDLIKKMP---FKPQPAIFGTLLSAC 351
           EA++L + M    FKP    +  LLSAC
Sbjct: 346 EAIELFEDMQGLGFKPNDVSYVELLSAC 373


>gi|125573515|gb|EAZ15030.1| hypothetical protein OsJ_04972 [Oryza sativa Japonica Group]
          Length = 813

 Score =  364 bits (934), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 195/524 (37%), Positives = 296/524 (56%), Gaps = 46/524 (8%)

Query: 62  FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK---------------------- 99
           F  +P ++  +W+ +I GFV    M +A  LF AM  +                      
Sbjct: 296 FDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDH 355

Query: 100 ------------------NSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISG 141
                             +  + ++++S Y + G +D+A+ LF    VK  V+++A++SG
Sbjct: 356 LRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSG 415

Query: 142 YMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKS 201
           Y     V+N  AE+   + + M    + P+A+++ S++  CSHL++LQ G+  H  V   
Sbjct: 416 Y-----VQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIR 470

Query: 202 PLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLF 261
            L  +T+    LI MY KCG ++ + ++F  +  +D+V+WN MI+GY  HG G++A  LF
Sbjct: 471 GLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALF 530

Query: 262 DKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGR 321
            +M + G  PD +TF+ LL AC+H+GLV  G  +F  M + YG+  + +HY CMVDLL R
Sbjct: 531 LEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYICMVDLLSR 590

Query: 322 AGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQ 381
            G L EA + I+ MP +    ++  LL ACRV+K +DL +  +  +  L P    G +V 
Sbjct: 591 GGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELGP-EGTGNFVL 649

Query: 382 LANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEK 441
           L+NIY+A  ++D+ A +R+  K     K PG SWIE+   +H F  GD+ HP+   I+ +
Sbjct: 650 LSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEINGSLHAFVGGDQSHPQSPEIYRE 709

Query: 442 LKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKN 501
           L  +   +K  GY PD  F L  + EE KE+ L+ HSEKLAIA+G++ +     I V KN
Sbjct: 710 LDNILVGIKKLGYQPDTSFVLQDLEEEEKEKALICHSEKLAIAYGILSLSEDKTIFVTKN 769

Query: 502 LRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
           LRVCGDCH   K+IS +++R IIVRD  RFHHFK+G CSCGD+W
Sbjct: 770 LRVCGDCHTVIKHISLVKRRAIIVRDANRFHHFKNGQCSCGDFW 813



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 93/341 (27%), Positives = 151/341 (44%), Gaps = 30/341 (8%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
           G L  A  LFD+IP PDV +YN ++     +S    A      R  ++   + N     F
Sbjct: 71  GHLSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNYTFPF 130

Query: 81  VQKKNMAKA---------RDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKS 131
             K   A A         R    A  + +    +A++  Y++C  L  A  +F   P + 
Sbjct: 131 ALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARD 190

Query: 132 VVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLG-IRPNASSLSSVLLGCSHLSSLQL 190
           +VAW AM++GY   G   ++ A     LL M + +  +RPNAS+L ++L   +   +L  
Sbjct: 191 LVAWNAMLAGYAHHGMYHHAVAH----LLSMQMQMHRLRPNASTLVALLPLLAQQGALAQ 246

Query: 191 GKQVHQLVF----------KSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVT 240
           G  VH              KS L       T L+ MY KCG L  A ++F  +  ++ VT
Sbjct: 247 GTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVT 306

Query: 241 WNAMISGYAQHGKGEKALRLFDKMKDEG---MKPDSITFVALLLACNHAGLVDLGIQYFD 297
           W+A+I G+    +  +A  LF  M  +G   + P SI   + L AC     + +G Q   
Sbjct: 307 WSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIA--SALRACASLDHLRMGEQ-LH 363

Query: 298 SMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 338
           +++   G+ A       ++ +  +AG + +A+ L  +M  K
Sbjct: 364 ALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVK 404



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 84/321 (26%), Positives = 140/321 (43%), Gaps = 36/321 (11%)

Query: 111 YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRP 170
           +I  G L +A  LF   P   V  +  +I  Y        + A DGL L R M+   + P
Sbjct: 67  HIASGHLSRAHHLFDQIPSPDVRTYNDLIRAYSS---SSPTAAADGLHLYRRMLRHRVAP 123

Query: 171 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 230
           N  +    L  CS L+    G+ +H+    + L  D    T L+ MY KC  L DA  +F
Sbjct: 124 NNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIF 183

Query: 231 LEIQRKDVVTWNAMISGYAQHGKGEKALR--LFDKMKDEGMKPDSITFVALLLACNHAGL 288
             +  +D+V WNAM++GYA HG    A+   L  +M+   ++P++ T VALL      G 
Sbjct: 184 ATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGA 243

Query: 289 VDLGIQYFDSMVNDYGIAA--KPDHY------------TCMVDLLGRAGKLVEAVDLIKK 334
           +  G     + V+ Y I A   P+              T ++D+  + G L+ A  +   
Sbjct: 244 LAQG-----TSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDA 298

Query: 335 MPFKPQ---PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKK 391
           MP + +    A+ G  +   R+ +   L  F AM    L       C++   +I +A++ 
Sbjct: 299 MPARNEVTWSALIGGFVLCSRMTQAFLL--FKAMLAQGL-------CFLSPTSIASALRA 349

Query: 392 WDDVARIRLSMKENNVVKMPG 412
              +  +R+  + + ++   G
Sbjct: 350 CASLDHLRMGEQLHALLAKSG 370


>gi|110739044|dbj|BAF01440.1| hypothetical protein [Arabidopsis thaliana]
          Length = 720

 Score =  364 bits (934), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 203/545 (37%), Positives = 311/545 (57%), Gaps = 17/545 (3%)

Query: 10  NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK- 68
           N+ +A +AK  G L  AQ +F  I    V S+N ++      S+D   + D   ++ I  
Sbjct: 184 NAFVASYAKC-GSLSYAQRVFHGIRSKTVNSWNALIGG-HAQSNDPRLSLDAHLQMKISG 241

Query: 69  ---DTASWNTMISGFVQKKNMAKARDL--FLAMP--EKNSVSWSAMISGYIECGQLDKAV 121
              D+ +  +++S   + K++   +++  F+     E++   + +++S YI CG+L    
Sbjct: 242 LLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQ 301

Query: 122 ELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLG 181
            LF     KS+V+W  +I+GY+     +N + +  L + R M+  GI+    S+  V   
Sbjct: 302 ALFDAMEDKSLVSWNTVITGYL-----QNGFPDRALGVFRQMVLYGIQLCGISMMPVFGA 356

Query: 182 CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTW 241
           CS L SL+LG++ H    K  L  D      LI MY K G +  + K+F  ++ K   +W
Sbjct: 357 CSLLPSLRLGREAHAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASW 416

Query: 242 NAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN 301
           NAMI GY  HG  ++A++LF++M+  G  PD +TF+ +L ACNH+GL+  G++Y D M +
Sbjct: 417 NAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMKS 476

Query: 302 DYGIAAKPDHYTCMVDLLGRAGKLVEAVDLI-KKMPFKPQPAIFGTLLSACRVHKRLDLA 360
            +G+     HY C++D+LGRAG+L +A+ ++ ++M  +    I+ +LLS+CR+H+ L++ 
Sbjct: 477 SFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQNLEMG 536

Query: 361 EFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGT 420
           E  A  LF L P      YV L+N+YA + KW+DV ++R  M E ++ K  G SWIE+  
Sbjct: 537 EKVAAKLFELEPEKPEN-YVLLSNLYAGLGKWEDVRKVRQRMNEMSLRKDAGCSWIELNR 595

Query: 421 VVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEK 480
            V  F  G+R       I      LE ++   GY PD     H + EE K + L  HSEK
Sbjct: 596 KVFSFVVGERFLDGFEEIKSLWSILEMKISKMGYRPDTMSVQHDLSEEEKIEQLRGHSEK 655

Query: 481 LAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCS 540
           LA+ +GLIK   GT IRV+KNLR+C DCH A K IS + +REI+VRD  RFHHFK+G CS
Sbjct: 656 LALTYGLIKTSEGTTIRVYKNLRICVDCHNAAKLISKVMEREIVVRDNKRFHHFKNGVCS 715

Query: 541 CGDYW 545
           CGDYW
Sbjct: 716 CGDYW 720



 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 58/208 (27%), Positives = 103/208 (49%), Gaps = 7/208 (3%)

Query: 98  EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGL 157
           +K  V  +A++  Y +CG +  A  +FK+   K+VV+W  M+ G+   G    ++     
Sbjct: 74  DKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTF----- 128

Query: 158 KLLRMMIGLG--IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLIS 215
            +LR M+  G  ++ +  ++ + +  C H S L   K++H    K     +       ++
Sbjct: 129 DVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPSLKELHCYSLKQEFVYNELVANAFVA 188

Query: 216 MYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSIT 275
            Y KCG L  A ++F  I+ K V +WNA+I G+AQ      +L    +MK  G+ PDS T
Sbjct: 189 SYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFT 248

Query: 276 FVALLLACNHAGLVDLGIQYFDSMVNDY 303
             +LL AC+    + LG +    ++ ++
Sbjct: 249 VCSLLSACSKLKSLRLGKEVHGFIIRNW 276



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 78/165 (47%), Gaps = 9/165 (5%)

Query: 130 KSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLG---IRPNASSLSSVLLGCSHLS 186
           ++ V+W +MI  +   G+ E S+    L L  MM   G     P+ ++L +VL  C+   
Sbjct: 1   RNFVSWNSMIRVFSDNGFSEESF----LLLGEMMEENGDGAFMPDVATLVTVLPVCARER 56

Query: 187 SLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMIS 246
            + LGK VH    K  L K+      L+ MY KCG + +A  +F     K+VV+WN M+ 
Sbjct: 57  EIGLGKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVG 116

Query: 247 GYAQHGKGEKALRLFDKM--KDEGMKPDSITFVALLLACNHAGLV 289
           G++  G       +  +M    E +K D +T +  +  C H   +
Sbjct: 117 GFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFL 161



 Score = 42.4 bits (98), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 70/301 (23%), Positives = 123/301 (40%), Gaps = 64/301 (21%)

Query: 1   MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIML----------SCILL 50
           M  K+ V+WN+V+ G+  Q G    A  +F ++     V Y I L          +C LL
Sbjct: 307 MEDKSLVSWNTVITGYL-QNGFPDRALGVFRQM-----VLYGIQLCGISMMPVFGACSLL 360

Query: 51  NSDDV-VAAFDFFQRLPIKDTASWN-TMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMI 108
            S  +   A  +  +  ++D A    ++I  + +  ++ ++  +F  + EK++ SW+AMI
Sbjct: 361 PSLRLGREAHAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWNAMI 420

Query: 109 SGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGI 168
            GY                           I G           A++ +KL   M   G 
Sbjct: 421 MGY--------------------------GIHGL----------AKEAIKLFEEMQRTGH 444

Query: 169 RPNASSLSSVLLGCSHLSSLQLG-KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC 227
            P+  +   VL  C+H   +  G + + Q+     L  +      +I M  + G L+ A 
Sbjct: 445 NPDDLTFLGVLTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDKAL 504

Query: 228 KLFLE--IQRKDVVTWNAMISGYAQHGK---GEK-ALRLFDKMKDEGMKPDSITFVALLL 281
           ++  E   +  DV  W +++S    H     GEK A +LF+    E  KP++   ++ L 
Sbjct: 505 RVVAEEMSEEADVGIWKSLLSSCRIHQNLEMGEKVAAKLFEL---EPEKPENYVLLSNLY 561

Query: 282 A 282
           A
Sbjct: 562 A 562


>gi|225424252|ref|XP_002280792.1| PREDICTED: pentatricopeptide repeat-containing protein At2g01510,
           mitochondrial [Vitis vinifera]
 gi|297737690|emb|CBI26891.3| unnamed protein product [Vitis vinifera]
          Length = 610

 Score =  364 bits (934), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 203/540 (37%), Positives = 308/540 (57%), Gaps = 27/540 (5%)

Query: 21  GKLKDAQELFDKIPQPDVVSYNIMLSCILLNS--DDVVAAFDFFQRLP-----------I 67
           G +  A++LFD++ +P    +N ++   + N   D  V+ +   + L            I
Sbjct: 83  GDMSYARQLFDEMHKPRPFLWNTIMKGYVKNGIPDKAVSVYGKMRHLGVRPDPFTFPFVI 142

Query: 68  KDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVA 127
           K  A    + +G     ++ K    F+A     +V    MI  Y++ G+L  A  LF   
Sbjct: 143 KACAELAELWAGLGMHGHVVKHGLEFVA-----AVRTELMIM-YVKFGELGCAEFLFGSM 196

Query: 128 PVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSS 187
             + +VAW A+I+  ++ G+     +   L+  R M   GI+P++ ++ S L  C HL  
Sbjct: 197 VERDLVAWNALIAVCVQTGF-----SSKALQSFREMGMAGIKPDSVTIVSALSACGHLGC 251

Query: 188 LQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISG 247
           L+ G+++++   +  +  +       + M  KCGD++ A  LF E+ +++V++W+ +I G
Sbjct: 252 LETGEEIYEFAREEGIDSNIIVHNARLDMCAKCGDMDKAMNLFDEMPQRNVISWSTVIGG 311

Query: 248 YAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV--NDYGI 305
           YA +G+ EKAL LF +MK++G++P+ +TF+A+L AC+H G V+ G QYF+ M   +D  I
Sbjct: 312 YAVNGESEKALALFSRMKNQGVQPNYVTFLAVLSACSHTGRVNEGWQYFNFMAQSDDKNI 371

Query: 306 AAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAM 365
             + +HY CMVDLLGR+G L EA + IK MP +  P I+G LL AC +H+ + L +  A 
Sbjct: 372 QPRKEHYACMVDLLGRSGHLEEAYNFIKIMPIEADPGIWGALLGACAIHQNIKLGQHVAD 431

Query: 366 NLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEF 425
            LF L P   A  +V L+N+YAA  +W  V ++R  MK+    K+  YS +E    +H  
Sbjct: 432 LLFELAP-EIASYHVLLSNMYAAAGRWHCVEKVRQRMKKKGARKVAAYSSVEFNGEIHIL 490

Query: 426 RSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAF 485
             GD+ HP+  SI  KL++L K+MK  GY+P+ +   H V +E KE  L  HSEKLAIAF
Sbjct: 491 YGGDKSHPQSASILAKLEDLLKQMKSMGYIPETDSVFHDVEDEEKESTLSTHSEKLAIAF 550

Query: 486 GLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
            LI      PIRV KNLR+CGDCH   K +S I  REII+RD  RFHHFK+G CSC D+W
Sbjct: 551 SLINGSPKFPIRVMKNLRICGDCHTFCKLVSRITMREIIMRDKNRFHHFKNGICSCKDFW 610


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.323    0.137    0.417 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,473,262,547
Number of Sequences: 23463169
Number of extensions: 340248608
Number of successful extensions: 925712
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 9936
Number of HSP's successfully gapped in prelim test: 2263
Number of HSP's that attempted gapping in prelim test: 738317
Number of HSP's gapped (non-prelim): 61370
length of query: 545
length of database: 8,064,228,071
effective HSP length: 148
effective length of query: 397
effective length of database: 8,886,646,355
effective search space: 3527998602935
effective search space used: 3527998602935
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 79 (35.0 bits)