BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009066
(545 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9M4P3|PP316_ARATH Pentatricopeptide repeat-containing protein At4g16835,
mitochondrial OS=Arabidopsis thaliana GN=DYW10 PE=2 SV=3
Length = 656
Score = 750 bits (1936), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/572 (65%), Positives = 442/572 (77%), Gaps = 29/572 (5%)
Query: 1 MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
M K T+ WNS+L G +K ++ +A +LFD+IP+PD SYNIMLSC + N + A
Sbjct: 87 MRAKNTITWNSLLIGISKDPSRMMEAHQLFDEIPEPDTFSYNIMLSCYVRNVN-FEKAQS 145
Query: 61 FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
FF R+P KD ASWNTMI+G+ ++ M KAR+LF +M EKN VSW+AMISGYIECG L+KA
Sbjct: 146 FFDRMPFKDAASWNTMITGYARRGEMEKARELFYSMMEKNEVSWNAMISGYIECGDLEKA 205
Query: 121 VELFKVAPVKSVVAWTAMISGYMKF---------------------------GYVENSWA 153
FKVAPV+ VVAWTAMI+GYMK GYVENS
Sbjct: 206 SHFFKVAPVRGVVAWTAMITGYMKAKKVELAEAMFKDMTVNKNLVTWNAMISGYVENSRP 265
Query: 154 EDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPL 213
EDGLKL R M+ GIRPN+S LSS LLGCS LS+LQLG+Q+HQ+V KS LC D TALT L
Sbjct: 266 EDGLKLFRAMLEEGIRPNSSGLSSALLGCSELSALQLGRQIHQIVSKSTLCNDVTALTSL 325
Query: 214 ISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDS 273
ISMYCKCG+L DA KLF +++KDVV WNAMISGYAQHG +KAL LF +M D ++PD
Sbjct: 326 ISMYCKCGELGDAWKLFEVMKKKDVVAWNAMISGYAQHGNADKALCLFREMIDNKIRPDW 385
Query: 274 ITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIK 333
ITFVA+LLACNHAGLV++G+ YF+SMV DY + +PDHYTCMVDLLGRAGKL EA+ LI+
Sbjct: 386 ITFVAVLLACNHAGLVNIGMAYFESMVRDYKVEPQPDHYTCMVDLLGRAGKLEEALKLIR 445
Query: 334 KMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWD 393
MPF+P A+FGTLL ACRVHK ++LAEFAA L LN NAAG YVQLANIYA+ +W+
Sbjct: 446 SMPFRPHAAVFGTLLGACRVHKNVELAEFAAEKLLQLNSQNAAG-YVQLANIYASKNRWE 504
Query: 394 DVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAG 453
DVAR+R MKE+NVVK+PGYSWIE+ VH FRS DR+HPEL SIH+KLKELEK+MKLAG
Sbjct: 505 DVARVRKRMKESNVVKVPGYSWIEIRNKVHHFRSSDRIHPELDSIHKKLKELEKKMKLAG 564
Query: 454 YVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATK 513
Y P+LEFALH V EE KE+LLL+HSEKLA+AFG IK+P G+ I+VFKNLR+CGDCH+A K
Sbjct: 565 YKPELEFALHNVEEEQKEKLLLWHSEKLAVAFGCIKLPQGSQIQVFKNLRICGDCHKAIK 624
Query: 514 YISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
+IS IEKREIIVRDTTRFHHFKDG+CSCGDYW
Sbjct: 625 FISEIEKREIIVRDTTRFHHFKDGSCSCGDYW 656
Score = 40.4 bits (93), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 70/135 (51%), Gaps = 15/135 (11%)
Query: 206 DTTALTPLISMYCKC---GDLEDACKLFLEIQRKDVVTWNAMISGYAQH-GKGEKALRLF 261
D + PL + +C GD++ A ++F ++ K+ +TWN+++ G ++ + +A +LF
Sbjct: 57 DQDQIFPLNKIIARCVRSGDIDGALRVFHGMRAKNTITWNSLLIGISKDPSRMMEAHQLF 116
Query: 262 DKMKDEGMKPDSITFVALLLACNHAGL-VDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLG 320
D++ + PD+ ++ ++L+C + + +FD M + AA + M+
Sbjct: 117 DEIPE----PDTFSY-NIMLSCYVRNVNFEKAQSFFDRM--PFKDAAS---WNTMITGYA 166
Query: 321 RAGKLVEAVDLIKKM 335
R G++ +A +L M
Sbjct: 167 RRGEMEKARELFYSM 181
>sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750
OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1
Length = 781
Score = 541 bits (1393), Expect = e-153, Method: Compositional matrix adjust.
Identities = 262/545 (48%), Positives = 361/545 (66%), Gaps = 8/545 (1%)
Query: 1 MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
MNV+ V+WN+++ G+A Q GK+ +A++LFD+ P DV ++ M+S + N V A +
Sbjct: 245 MNVRDVVSWNTIITGYA-QSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRM-VEEARE 302
Query: 61 FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
F ++P ++ SWN M++G+VQ + M A++LF MP +N +W+ MI+GY +CG++ +A
Sbjct: 303 LFDKMPERNEVSWNAMLAGYVQGERMEMAKELFDVMPCRNVSTWNTMITGYAQCGKISEA 362
Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLL 180
LF P + V+W AMI+GY + G+ + + L+L M G R N SS SS L
Sbjct: 363 KNLFDKMPKRDPVSWAAMIAGYSQSGH-----SFEALRLFVQMEREGGRLNRSSFSSALS 417
Query: 181 GCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVT 240
C+ + +L+LGKQ+H + K L+ MYCKCG +E+A LF E+ KD+V+
Sbjct: 418 TCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVS 477
Query: 241 WNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV 300
WN MI+GY++HG GE ALR F+ MK EG+KPD T VA+L AC+H GLVD G QYF +M
Sbjct: 478 WNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFYTMT 537
Query: 301 NDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLA 360
DYG+ HY CMVDLLGRAG L +A +L+K MPF+P AI+GTLL A RVH +LA
Sbjct: 538 QDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELA 597
Query: 361 EFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGT 420
E AA +F + P N+ G YV L+N+YA+ +W DV ++R+ M++ V K+PGYSWIE+
Sbjct: 598 ETAADKIFAMEPENS-GMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQN 656
Query: 421 VVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEK 480
H F GD HPE I L+EL+ RMK AGYV LH V EE KE+++ +HSE+
Sbjct: 657 KTHTFSVGDEFHPEKDEIFAFLEELDLRMKKAGYVSKTSVVLHDVEEEEKERMVRYHSER 716
Query: 481 LAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCS 540
LA+A+G+++V G PIRV KNLRVC DCH A KY++ I R II+RD RFHHFKDG+CS
Sbjct: 717 LAVAYGIMRVSSGRPIRVIKNLRVCEDCHNAIKYMARITGRLIILRDNNRFHHFKDGSCS 776
Query: 541 CGDYW 545
CGDYW
Sbjct: 777 CGDYW 781
Score = 161 bits (408), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 105/344 (30%), Positives = 176/344 (51%), Gaps = 29/344 (8%)
Query: 9 WNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK 68
WN ++ + + G+ +A +F ++P+ VSYN M+S L N + +A F +P +
Sbjct: 67 WNVAISSYMRT-GRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFELAR-KLFDEMPER 124
Query: 69 DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAP 128
D SWN MI G+V+ +N+ KAR+LF MPE++ SW+ M+SGY + G +D A +F P
Sbjct: 125 DLVSWNVMIKGYVRNRNLGKARELFEIMPERDVCSWNTMLSGYAQNGCVDDARSVFDRMP 184
Query: 129 VKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNAS--SLSSVLLGCSHLS 186
K+ V+W A++S YV+NS E+ L + R N + S + +L G
Sbjct: 185 EKNDVSWNALLS-----AYVQNSKMEEACMLFKS------RENWALVSWNCLLGGFVKKK 233
Query: 187 SLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMIS 246
+ +Q F S +D + +I+ Y + G +++A +LF E +DV TW AM+S
Sbjct: 234 KIVEARQ----FFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWTAMVS 289
Query: 247 GYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIA 306
GY Q+ E+A LFDKM + + +++ A+L +++ + FD M
Sbjct: 290 GYIQNRMVEEARELFDKMPER----NEVSWNAMLAGYVQGERMEMAKELFDVMP-----C 340
Query: 307 AKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSA 350
+ M+ + GK+ EA +L KMP K P + +++
Sbjct: 341 RNVSTWNTMITGYAQCGKISEAKNLFDKMP-KRDPVSWAAMIAG 383
Score = 36.6 bits (83), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 50/118 (42%), Gaps = 22/118 (18%)
Query: 219 KCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVA 278
KCGD D+ WN IS Y + G+ +ALR+F +M + S+++
Sbjct: 58 KCGD-------------SDIKEWNVAISSYMRTGRCNEALRVFKRMP----RWSSVSYNG 100
Query: 279 LLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 336
++ G +L + FD M ++ + M+ R L +A +L + MP
Sbjct: 101 MISGYLRNGEFELARKLFDEMPERDLVS-----WNVMIKGYVRNRNLGKARELFEIMP 153
>sp|Q9FXB9|PPR84_ARATH Pentatricopeptide repeat-containing protein At1g56690,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H69 PE=2
SV=1
Length = 704
Score = 461 bits (1186), Expect = e-129, Method: Compositional matrix adjust.
Identities = 240/572 (41%), Positives = 339/572 (59%), Gaps = 30/572 (5%)
Query: 1 MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
M + V+W + G G++ A++L+D +P DVV+ M+ L V A
Sbjct: 136 MPERNEVSWTVMFGGLIDD-GRIDKARKLYDMMPVKDVVASTNMIGG-LCREGRVDEARL 193
Query: 61 FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
F + ++ +W TMI+G+ Q + AR LF MPEK VSW++M+ GY G+++ A
Sbjct: 194 IFDEMRERNVVTWTTMITGYRQNNRVDVARKLFEVMPEKTEVSWTSMLLGYTLSGRIEDA 253
Query: 121 VELFKVAPVKSVVAWTAMISGYMKFG--------------------------YVENSWAE 154
E F+V P+K V+A AMI G+ + G Y +
Sbjct: 254 EEFFEVMPMKPVIACNAMIVGFGEVGEISKARRVFDLMEDRDNATWRGMIKAYERKGFEL 313
Query: 155 DGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLI 214
+ L L M G+RP+ SL S+L C+ L+SLQ G+QVH + + D + L+
Sbjct: 314 EALDLFAQMQKQGVRPSFPSLISILSVCATLASLQYGRQVHAHLVRCQFDDDVYVASVLM 373
Query: 215 SMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSI 274
+MY KCG+L A +F KD++ WN++ISGYA HG GE+AL++F +M G P+ +
Sbjct: 374 TMYVKCGELVKAKLVFDRFSSKDIIMWNSIISGYASHGLGEEALKIFHEMPSSGTMPNKV 433
Query: 275 TFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKK 334
T +A+L AC++AG ++ G++ F+SM + + + +HY+C VD+LGRAG++ +A++LI+
Sbjct: 434 TLIAILTACSYAGKLEEGLEIFESMESKFCVTPTVEHYSCTVDMLGRAGQVDKAMELIES 493
Query: 335 MPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDD 394
M KP ++G LL AC+ H RLDLAE AA LF P N AG YV L++I A+ KW D
Sbjct: 494 MTIKPDATVWGALLGACKTHSRLDLAEVAAKKLFENEPDN-AGTYVLLSSINASRSKWGD 552
Query: 395 VARIRLSMKENNVVKMPGYSWIEVGTVVHEF-RSGDRVHPELVSIHEKLKELEKRMKLAG 453
VA +R +M+ NNV K PG SWIEVG VH F R G + HPE I L++ + ++ AG
Sbjct: 553 VAVVRKNMRTNNVSKFPGCSWIEVGKKVHMFTRGGIKNHPEQAMILMMLEKTDGLLREAG 612
Query: 454 YVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATK 513
Y PD LH V EE K L HSE+LA+A+GL+K+P G PIRV KNLRVCGDCH A K
Sbjct: 613 YSPDCSHVLHDVDEEEKVDSLSRHSERLAVAYGLLKLPEGVPIRVMKNLRVCGDCHAAIK 672
Query: 514 YISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
IS + +REII+RD RFHHF +G CSC DYW
Sbjct: 673 LISKVTEREIILRDANRFHHFNNGECSCRDYW 704
Score = 144 bits (363), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 92/328 (28%), Positives = 168/328 (51%), Gaps = 40/328 (12%)
Query: 1 MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
+ K +WNS+++G+ G K+A++LFD++ + +VVS+N ++S + N +V A +
Sbjct: 43 LQFKAIGSWNSIVSGYFSN-GLPKEARQLFDEMSERNVVSWNGLVSGYIKNRM-IVEARN 100
Query: 61 FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
F+ +P ++ SW M+ G++Q+ + +A LF MPE+N VSW+ M G I+ G++DKA
Sbjct: 101 VFELMPERNVVSWTAMVKGYMQEGMVGEAESLFWRMPERNEVSWTVMFGGLIDDGRIDKA 160
Query: 121 VELFKVAPVKSVVAWTAMISGY--------------------------MKFGYVENSWAE 154
+L+ + PVK VVA T MI G M GY +N+ +
Sbjct: 161 RKLYDMMPVKDVVASTNMIGGLCREGRVDEARLIFDEMRERNVVTWTTMITGYRQNNRVD 220
Query: 155 DGLKLLRMMIGLGIRPNASSLS--SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTP 212
KL +M P + +S S+LLG + ++ ++ +++ P+ A
Sbjct: 221 VARKLFEVM------PEKTEVSWTSMLLGYTLSGRIEDAEEFFEVMPMKPV----IACNA 270
Query: 213 LISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPD 272
+I + + G++ A ++F ++ +D TW MI Y + G +AL LF +M+ +G++P
Sbjct: 271 MIVGFGEVGEISKARRVFDLMEDRDNATWRGMIKAYERKGFELEALDLFAQMQKQGVRPS 330
Query: 273 SITFVALLLACNHAGLVDLGIQYFDSMV 300
+ +++L C + G Q +V
Sbjct: 331 FPSLISILSVCATLASLQYGRQVHAHLV 358
Score = 122 bits (305), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 89/317 (28%), Positives = 158/317 (49%), Gaps = 23/317 (7%)
Query: 58 AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQL 117
A FF L K SWN+++SG+ +AR LF M E+N VSW+ ++SGYI+ +
Sbjct: 36 ARKFFDSLQFKAIGSWNSIVSGYFSNGLPKEARQLFDEMSERNVVSWNGLVSGYIKNRMI 95
Query: 118 DKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSS 177
+A +F++ P ++VV+WTAM+ GYM+ G V E RM P + +S
Sbjct: 96 VEARNVFELMPERNVVSWTAMVKGYMQEGMV----GEAESLFWRM-------PERNEVSW 144
Query: 178 VLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKD 237
++ + ++ K +L P+ KD A T +I C+ G +++A +F E++ ++
Sbjct: 145 TVMFGGLIDDGRIDK-ARKLYDMMPV-KDVVASTNMIGGLCREGRVDEARLIFDEMRERN 202
Query: 238 VVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFD 297
VVTW MI+GY Q+ + + A +LF+ M ++ +++ ++LL +G ++ ++F+
Sbjct: 203 VVTWTTMITGYRQNNRVDVARKLFEVMPEK----TEVSWTSMLLGYTLSGRIEDAEEFFE 258
Query: 298 SMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRL 357
M IA M+ G G++ +A + M + G + + R L
Sbjct: 259 VMPMKPVIAC-----NAMIVGFGEVGEISKARRVFDLMEDRDNATWRGMIKAYERKGFEL 313
Query: 358 D-LAEFAAMNLFNLNPA 373
+ L FA M + P+
Sbjct: 314 EALDLFAQMQKQGVRPS 330
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/292 (19%), Positives = 120/292 (41%), Gaps = 49/292 (16%)
Query: 102 VSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMK----------------- 144
V+ S IS G++++A + F K++ +W +++SGY
Sbjct: 18 VNCSFEISRLSRIGKINEARKFFDSLQFKAIGSWNSIVSGYFSNGLPKEARQLFDEMSER 77
Query: 145 ---------FGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVH 195
GY++N + + +M P + +S + ++ +G +
Sbjct: 78 NVVSWNGLVSGYIKNRMIVEARNVFELM------PERNVVSWTAMVKGYMQEGMVG-EAE 130
Query: 196 QLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGE 255
L ++ P ++ + T + G ++ A KL+ + KDVV MI G + G+ +
Sbjct: 131 SLFWRMPE-RNEVSWTVMFGGLIDDGRIDKARKLYDMMPVKDVVASTNMIGGLCREGRVD 189
Query: 256 KALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCM 315
+A +FD+M++ + +T+ ++ VD+ + F+ M ++ +T M
Sbjct: 190 EARLIFDEMRERNV----VTWTTMITGYRQNNRVDVARKLFEVMPEKTEVS-----WTSM 240
Query: 316 VDLLGRAGKLVEAVDLIKKMPFKPQPAI------FGTLLSACRVHKRLDLAE 361
+ +G++ +A + + MP KP A FG + + + DL E
Sbjct: 241 LLGYTLSGRIEDAEEFFEVMPMKPVIACNAMIVGFGEVGEISKARRVFDLME 292
Score = 53.5 bits (127), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/221 (23%), Positives = 97/221 (43%), Gaps = 28/221 (12%)
Query: 214 ISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDS 273
IS + G + +A K F +Q K + +WN+++SGY +G ++A +LFD+M + +
Sbjct: 24 ISRLSRIGKINEARKFFDSLQFKAIGSWNSIVSGYFSNGLPKEARQLFDEMSERNV---- 79
Query: 274 ITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIK 333
+++ L+ ++ F+ M ++ +T MV + G + EA L
Sbjct: 80 VSWNGLVSGYIKNRMIVEARNVFELMPERNVVS-----WTAMVKGYMQEGMVGEAESLFW 134
Query: 334 KMPFKPQ---PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMK 390
+MP + + +FG L+ R+ K A L+++ P +
Sbjct: 135 RMPERNEVSWTVMFGGLIDDGRIDK--------ARKLYDMMPVKDVVASTNMIGGLCREG 186
Query: 391 KWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRV 431
+ D+ I M+E NVV +W T++ +R +RV
Sbjct: 187 RVDEARLIFDEMRERNVV-----TWT---TMITGYRQNNRV 219
>sp|Q56XI1|PPR25_ARATH Pentatricopeptide repeat-containing protein At1g09410
OS=Arabidopsis thaliana GN=PCMP-H18 PE=2 SV=2
Length = 705
Score = 461 bits (1185), Expect = e-129, Method: Compositional matrix adjust.
Identities = 241/573 (42%), Positives = 345/573 (60%), Gaps = 31/573 (5%)
Query: 1 MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
M K V+W +L GF Q G++ DA +L++ IP D ++ M+ L V A +
Sbjct: 136 MPEKNKVSWTVMLIGFL-QDGRIDDACKLYEMIPDKDNIARTSMIHG-LCKEGRVDEARE 193
Query: 61 FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
F + + +W TM++G+ Q + AR +F MPEK VSW++M+ GY++ G+++ A
Sbjct: 194 IFDEMSERSVITWTTMVTGYGQNNRVDDARKIFDVMPEKTEVSWTSMLMGYVQNGRIEDA 253
Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGYV--------------------------ENSWAE 154
ELF+V PVK V+A AMISG + G + N +
Sbjct: 254 EELFEVMPVKPVIACNAMISGLGQKGEIAKARRVFDSMKERNDASWQTVIKIHERNGFEL 313
Query: 155 DGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLI 214
+ L L +M G+RP +L S+L C+ L+SL GKQVH + + D + L+
Sbjct: 314 EALDLFILMQKQGVRPTFPTLISILSVCASLASLHHGKQVHAQLVRCQFDVDVYVASVLM 373
Query: 215 SMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEG-MKPDS 273
+MY KCG+L + +F KD++ WN++ISGYA HG GE+AL++F +M G KP+
Sbjct: 374 TMYIKCGELVKSKLIFDRFPSKDIIMWNSIISGYASHGLGEEALKVFCEMPLSGSTKPNE 433
Query: 274 ITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIK 333
+TFVA L AC++AG+V+ G++ ++SM + +G+ HY CMVD+LGRAG+ EA+++I
Sbjct: 434 VTFVATLSACSYAGMVEEGLKIYESMESVFGVKPITAHYACMVDMLGRAGRFNEAMEMID 493
Query: 334 KMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWD 393
M +P A++G+LL ACR H +LD+AEF A L + P N+ G Y+ L+N+YA+ +W
Sbjct: 494 SMTVEPDAAVWGSLLGACRTHSQLDVAEFCAKKLIEIEPENS-GTYILLSNMYASQGRWA 552
Query: 394 DVARIRLSMKENNVVKMPGYSWIEVGTVVHEF-RSGDRVHPELVSIHEKLKELEKRMKLA 452
DVA +R MK V K PG SW EV VH F R G HPE SI + L EL+ ++ A
Sbjct: 553 DVAELRKLMKTRLVRKSPGCSWTEVENKVHAFTRGGINSHPEQESILKILDELDGLLREA 612
Query: 453 GYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRAT 512
GY PD +ALH V EE K L +HSE+LA+A+ L+K+ G PIRV KNLRVC DCH A
Sbjct: 613 GYNPDCSYALHDVDEEEKVNSLKYHSERLAVAYALLKLSEGIPIRVMKNLRVCSDCHTAI 672
Query: 513 KYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
K IS +++REII+RD RFHHF++G CSC DYW
Sbjct: 673 KIISKVKEREIILRDANRFHHFRNGECSCKDYW 705
Score = 132 bits (333), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 93/352 (26%), Positives = 172/352 (48%), Gaps = 63/352 (17%)
Query: 21 GKLKDAQELFDKIPQPDVVSYNIMLSCILLN--SDDVVAAFDFFQRLPIKDTASWNTMIS 78
GK+ +A++LFD + S+N M++ N D A F +P ++ SWN ++S
Sbjct: 31 GKIHEARKLFDSCDSKSISSWNSMVAGYFANLMPRD---ARKLFDEMPDRNIISWNGLVS 87
Query: 79 GFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAM 138
G+++ + +AR +F MPE+N VSW+A++ GY+ G++D A LF P K+ V+WT M
Sbjct: 88 GYMKNGEIDEARKVFDLMPERNVVSWTALVKGYVHNGKVDVAESLFWKMPEKNKVSWTVM 147
Query: 139 ISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLV 198
+ G+++ G + +D KL M+ P+
Sbjct: 148 LIGFLQDGRI-----DDACKLYEMI------PD--------------------------- 169
Query: 199 FKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKAL 258
KD A T +I CK G +++A ++F E+ + V+TW M++GY Q+ + + A
Sbjct: 170 ------KDNIARTSMIHGLCKEGRVDEAREIFDEMSERSVITWTTMVTGYGQNNRVDDAR 223
Query: 259 RLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDL 318
++FD M ++ +++ ++L+ G ++ + F+ M IA M+
Sbjct: 224 KIFDVMPEK----TEVSWTSMLMGYVQNGRIEDAEELFEVMPVKPVIAC-----NAMISG 274
Query: 319 LGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNL 370
LG+ G++ +A + M + A + T++ ++H+R E A++LF L
Sbjct: 275 LGQKGEIAKARRVFDSMKER-NDASWQTVI---KIHERNGF-ELEALDLFIL 321
Score = 94.7 bits (234), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/266 (25%), Positives = 130/266 (48%), Gaps = 22/266 (8%)
Query: 74 NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVV 133
N I+ + + +AR LF + K+ SW++M++GY A +LF P ++++
Sbjct: 21 NVRITHLSRIGKIHEARKLFDSCDSKSISSWNSMVAGYFANLMPRDARKLFDEMPDRNII 80
Query: 134 AWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ 193
+W ++SGYMK G ++ + R + L N S ++++ G H + + +
Sbjct: 81 SWNGLVSGYMKNGEIDEA---------RKVFDLMPERNVVSWTALVKGYVHNGKVDVAE- 130
Query: 194 VHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGK 253
L +K P K+ + T ++ + + G ++DACKL+ I KD + +MI G + G+
Sbjct: 131 --SLFWKMPE-KNKVSWTVMLIGFLQDGRIDDACKLYEMIPDKDNIARTSMIHGLCKEGR 187
Query: 254 GEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYT 313
++A +FD+M + + IT+ ++ VD + FD M ++ +T
Sbjct: 188 VDEAREIFDEMSERSV----ITWTTMVTGYGQNNRVDDARKIFDVMPEKTEVS-----WT 238
Query: 314 CMVDLLGRAGKLVEAVDLIKKMPFKP 339
M+ + G++ +A +L + MP KP
Sbjct: 239 SMLMGYVQNGRIEDAEELFEVMPVKP 264
>sp|Q9SUH6|PP341_ARATH Pentatricopeptide repeat-containing protein At4g30700
OS=Arabidopsis thaliana GN=DYW9 PE=2 SV=1
Length = 792
Score = 429 bits (1104), Expect = e-119, Method: Compositional matrix adjust.
Identities = 230/553 (41%), Positives = 324/553 (58%), Gaps = 37/553 (6%)
Query: 12 VLAGFAK---QRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRL--- 65
VL GF + GK+K LF + +PD+V+YN M+ N + ++ F+ L
Sbjct: 258 VLTGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTSNGETELS-LSLFKELMLS 316
Query: 66 -------------PIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYI 112
P+ I G+ K N FL+ SVS +A+ + Y
Sbjct: 317 GARLRSSTLVSLVPVSGHLMLIYAIHGYCLKSN-------FLSHA---SVS-TALTTVYS 365
Query: 113 ECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNA 172
+ +++ A +LF +P KS+ +W AMISGY +N ED + L R M PN
Sbjct: 366 KLNEIESARKLFDESPEKSLPSWNAMISGY-----TQNGLTEDAISLFREMQKSEFSPNP 420
Query: 173 SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLE 232
+++ +L C+ L +L LGK VH LV + T LI MY KCG + +A +LF
Sbjct: 421 VTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDL 480
Query: 233 IQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 292
+ +K+ VTWN MISGY HG+G++AL +F +M + G+ P +TF+ +L AC+HAGLV G
Sbjct: 481 MTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYACSHAGLVKEG 540
Query: 293 IQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACR 352
+ F+SM++ YG HY CMVD+LGRAG L A+ I+ M +P +++ TLL ACR
Sbjct: 541 DEIFNSMIHRYGFEPSVKHYACMVDILGRAGHLQRALQFIEAMSIEPGSSVWETLLGACR 600
Query: 353 VHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPG 412
+HK +LA + LF L+P N G +V L+NI++A + + A +R + K+ + K PG
Sbjct: 601 IHKDTNLARTVSEKLFELDPDN-VGYHVLLSNIHSADRNYPQAATVRQTAKKRKLAKAPG 659
Query: 413 YSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQ 472
Y+ IE+G H F SGD+ HP++ I+EKL++LE +M+ AGY P+ E ALH V EE +E
Sbjct: 660 YTLIEIGETPHVFTSGDQSHPQVKEIYEKLEKLEGKMREAGYQPETELALHDVEEEEREL 719
Query: 473 LLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFH 532
++ HSE+LAIAFGLI GT IR+ KNLRVC DCH TK IS I +R I+VRD RFH
Sbjct: 720 MVKVHSERLAIAFGLIATEPGTEIRIIKNLRVCLDCHTVTKLISKITERVIVVRDANRFH 779
Query: 533 HFKDGTCSCGDYW 545
HFKDG CSCGDYW
Sbjct: 780 HFKDGVCSCGDYW 792
Score = 121 bits (303), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 93/356 (26%), Positives = 166/356 (46%), Gaps = 24/356 (6%)
Query: 22 KLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK-----DTASWNTM 76
+++DA+++FD++P+ D + +N M+S N + V + F+ L + DT + +
Sbjct: 169 RVEDARKVFDRMPEKDTILWNTMISGYRKN-EMYVESIQVFRDLINESCTRLDTTTLLDI 227
Query: 77 ISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYI----ECGQLDKAVELFKVAPVKSV 132
+ + + + + + S +++G+I +CG++ LF+ +
Sbjct: 228 LPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMGSALFREFRKPDI 287
Query: 133 VAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGK 192
VA+ AMI GY G E S L L + ++ G R +S+L S++ H L L
Sbjct: 288 VAYNAMIHGYTSNGETELS-----LSLFKELMLSGARLRSSTLVSLVPVSGH---LMLIY 339
Query: 193 QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHG 252
+H KS + T L ++Y K ++E A KLF E K + +WNAMISGY Q+G
Sbjct: 340 AIHGYCLKSNFLSHASVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNG 399
Query: 253 KGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY 312
E A+ LF +M+ P+ +T +L AC G + LG ++ +V +
Sbjct: 400 LTEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSLG-KWVHDLVRSTDFESSIYVS 458
Query: 313 TCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLF 368
T ++ + + G + EA L M K + T++S +H + A+N+F
Sbjct: 459 TALIGMYAKCGSIAEARRLFDLMT-KKNEVTWNTMISGYGLHGQGQ----EALNIF 509
Score = 103 bits (258), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 90/371 (24%), Positives = 156/371 (42%), Gaps = 46/371 (12%)
Query: 21 GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
G + A+++F + +PDV +N+++ +N + ++ F L N+ F
Sbjct: 66 GAIYYARDIFLSVQRPDVFLFNVLMRGFSVN-ESPHSSLSVFAHLRKSTDLKPNSSTYAF 124
Query: 81 VQKKNMAKARDLFLAMPEKNSVS---------WSAMISGYIECGQLDKAVELFKVAPVKS 131
D + +V S ++ Y + +++ A ++F P K
Sbjct: 125 AISAASGFRDDRAGRVIHGQAVVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKD 184
Query: 132 VVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLG-IRPNASSLSSVLLGCSHLSSLQL 190
+ W MISGY K N + +++ R +I R + ++L +L + L L+L
Sbjct: 185 TILWNTMISGYRK-----NEMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRL 239
Query: 191 GKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQ 250
G Q+H L K+ LT IS+Y KCG ++ LF E ++ D+V +NAMI GY
Sbjct: 240 GMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTS 299
Query: 251 HGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGL------------------VDLG 292
+G+ E +L LF ++ G + S T V+L+ H L V
Sbjct: 300 NGETELSLSLFKELMLSGARLRSSTLVSLVPVSGHLMLIYAIHGYCLKSNFLSHASVSTA 359
Query: 293 IQYFDSMVNDYGIAAK-----PD----HYTCMVDLLGRAGKLVEAVDLIKKM---PFKPQ 340
+ S +N+ A K P+ + M+ + G +A+ L ++M F P
Sbjct: 360 LTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPN 419
Query: 341 PAIFGTLLSAC 351
P +LSAC
Sbjct: 420 PVTITCILSAC 430
Score = 40.4 bits (93), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Query: 193 QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHG 252
Q H + D + LT L G + A +FL +QR DV +N ++ G++ +
Sbjct: 38 QTHAQIILHGFRNDISLLTKLTQRLSDLGAIYYARDIFLSVQRPDVFLFNVLMRGFSVNE 97
Query: 253 KGEKALRLFDKM-KDEGMKPDSITF 276
+L +F + K +KP+S T+
Sbjct: 98 SPHSSLSVFAHLRKSTDLKPNSSTY 122
>sp|Q9SHZ8|PP168_ARATH Pentatricopeptide repeat-containing protein At2g22070
OS=Arabidopsis thaliana GN=PCMP-H41 PE=3 SV=1
Length = 786
Score = 427 bits (1097), Expect = e-118, Method: Compositional matrix adjust.
Identities = 250/563 (44%), Positives = 330/563 (58%), Gaps = 32/563 (5%)
Query: 1 MNVKTTVNWNSVLAGFAKQRGKLKDAQELF-----DKIPQPDVVSYNIMLS--------C 47
M + V WNS+++GF QRG A ++F D + PD + +LS C
Sbjct: 238 MAERDIVTWNSMISGF-NQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSACANLEKLC 296
Query: 48 I--LLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKN--SVS 103
I ++S V FD N +IS + + + AR L K+
Sbjct: 297 IGKQIHSHIVTTGFDI-------SGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEG 349
Query: 104 WSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMM 163
++A++ GYI+ G +++A +F + VVAWTAMI GY + G S+ E + L R M
Sbjct: 350 FTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHG----SYGE-AINLFRSM 404
Query: 164 IGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDL 223
+G G RPN+ +L+++L S L+SL GKQ+H KS + LI+MY K G++
Sbjct: 405 VGGGQRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGNI 464
Query: 224 EDACKLFLEIQ-RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA 282
A + F I+ +D V+W +MI AQHG E+AL LF+ M EG++PD IT+V + A
Sbjct: 465 TSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSA 524
Query: 283 CNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPA 342
C HAGLV+ G QYFD M + I HY CMVDL GRAG L EA + I+KMP +P
Sbjct: 525 CTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVV 584
Query: 343 IFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSM 402
+G+LLSACRVHK +DL + AA L L P N+ G Y LAN+Y+A KW++ A+IR SM
Sbjct: 585 TWGSLLSACRVHKNIDLGKVAAERLLLLEPENS-GAYSALANLYSACGKWEEAAKIRKSM 643
Query: 403 KENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFAL 462
K+ V K G+SWIEV VH F D HPE I+ +K++ +K GYVPD L
Sbjct: 644 KDGRVKKEQGFSWIEVKHKVHVFGVEDGTHPEKNEIYMTMKKIWDEIKKMGYVPDTASVL 703
Query: 463 HAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKRE 522
H + EEVKEQ+L HSEKLAIAFGLI P T +R+ KNLRVC DCH A K+IS + RE
Sbjct: 704 HDLEEEVKEQILRHHSEKLAIAFGLISTPDKTTLRIMKNLRVCNDCHTAIKFISKLVGRE 763
Query: 523 IIVRDTTRFHHFKDGTCSCGDYW 545
IIVRDTTRFHHFKDG CSC DYW
Sbjct: 764 IIVRDTTRFHHFKDGFCSCRDYW 786
Score = 132 bits (331), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 110/411 (26%), Positives = 184/411 (44%), Gaps = 88/411 (21%)
Query: 1 MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIML--------------- 45
M ++T +WN+VL+ ++K RG + E FD++PQ D VS+ M+
Sbjct: 75 MPLRTAFSWNTVLSAYSK-RGDMDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRV 133
Query: 46 ------------SCILLNSDDVVAA----------FDFFQRLPIKDTAS-WNTMISGFVQ 82
L N VAA F +L ++ S N++++ + +
Sbjct: 134 MGDMVKEGIEPTQFTLTNVLASVAATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAK 193
Query: 83 KKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGY 142
+ A+ +F M ++ SW+AMI+ +++ GQ+D A+ F+ + +V W +MISG+
Sbjct: 194 CGDPMMAKFVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGF 253
Query: 143 MKFGYVENSWAEDGL-KLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKS 201
+ GY + A D K+LR + + P+ +L+SVL C++L L +GKQ+H + +
Sbjct: 254 NQRGY--DLRALDIFSKMLRDSL---LSPDRFTLASVLSACANLEKLCIGKQIHSHIVTT 308
Query: 202 PLCKDTTALTPLISMYCKCGDLEDACKL-------------------------------- 229
L LISMY +CG +E A +L
Sbjct: 309 GFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKN 368
Query: 230 -FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGL 288
F+ ++ +DVV W AMI GY QHG +A+ LF M G +P+S T A+L +
Sbjct: 369 IFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTLAAMLSVASSLAS 428
Query: 289 VDLGIQYFDSMVND---YGIAAKPDHYTCMVDLLGRAGKLV---EAVDLIK 333
+ G Q S V Y ++ ++ + +AG + A DLI+
Sbjct: 429 LSHGKQIHGSAVKSGEIYSVSVS----NALITMYAKAGNITSASRAFDLIR 475
Score = 119 bits (298), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 95/368 (25%), Positives = 166/368 (45%), Gaps = 36/368 (9%)
Query: 38 VVSYNIMLSCILLN--------SDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKA 89
V+ +M S L+N + + A F +P++ SWNT++S + ++ +M
Sbjct: 40 VIKSGLMFSVYLMNNLMNVYSKTGYALHARKLFDEMPLRTAFSWNTVLSAYSKRGDMDST 99
Query: 90 RDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVE 149
+ F +P+++SVSW+ MI GY GQ KA+ + VK + T +
Sbjct: 100 CEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMG-DMVKEGIEPTQFTLTNVLASVAA 158
Query: 150 NSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTA 209
E G K+ ++ LG+R N S +S+L + + K VF + +D ++
Sbjct: 159 TRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAK----FVFDRMVVRDISS 214
Query: 210 LTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKM-KDEG 268
+I+++ + G ++ A F ++ +D+VTWN+MISG+ Q G +AL +F KM +D
Sbjct: 215 WNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSL 274
Query: 269 MKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEA 328
+ PD T ++L AC + + +G Q +V G ++ + R G + A
Sbjct: 275 LSPDRFTLASVLSACANLEKLCIGKQIHSHIVTT-GFDISGIVLNALISMYSRCGGVETA 333
Query: 329 VDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAA 388
LI++ R K L + F A+ L+ G Q NI+ +
Sbjct: 334 RRLIEQ-----------------RGTKDLKIEGFTAL----LDGYIKLGDMNQAKNIFVS 372
Query: 389 MKKWDDVA 396
+K D VA
Sbjct: 373 LKDRDVVA 380
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 71/152 (46%), Gaps = 15/152 (9%)
Query: 170 PNASSLSSVLLGCSHLSSLQLGKQ--------VHQLVFKSPLCKDTTALTPLISMYCKCG 221
P SLS++L C++L + K VH V KS L + L+++Y K G
Sbjct: 4 PVPLSLSTLLELCTNLLQKSVNKSNGRFTAQLVHCRVIKSGLMFSVYLMNNLMNVYSKTG 63
Query: 222 DLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLL 281
A KLF E+ + +WN ++S Y++ G + FD++ + DS+++ +++
Sbjct: 64 YALHARKLFDEMPLRTAFSWNTVLSAYSKRGDMDSTCEFFDQLP----QRDSVSWTTMIV 119
Query: 282 ACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYT 313
+ G I+ MV + GI +P +T
Sbjct: 120 GYKNIGQYHKAIRVMGDMVKE-GI--EPTQFT 148
>sp|Q9S7F4|PP206_ARATH Putative pentatricopeptide repeat-containing protein At2g01510
OS=Arabidopsis thaliana GN=PCMP-H36 PE=3 SV=1
Length = 825
Score = 425 bits (1093), Expect = e-118, Method: Compositional matrix adjust.
Identities = 214/544 (39%), Positives = 326/544 (59%), Gaps = 15/544 (2%)
Query: 10 NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPI-- 67
N +L ++K ++ + + LFD++P+ D VSYN+++S +D A+ FF+ +
Sbjct: 289 NQILDFYSKH-DRVLETRMLFDEMPELDFVSYNVVISS-YSQADQYEASLHFFREMQCMG 346
Query: 68 --KDTASWNTMISGFVQKKNMAKARDL----FLAMPEKNSVSWSAMISGYIECGQLDKAV 121
+ + TM+S ++ R L LA + ++++ Y +C ++A
Sbjct: 347 FDRRNFPFATMLSIAANLSSLQMGRQLHCQALLATADSILHVGNSLVDMYAKCEMFEEAE 406
Query: 122 ELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLG 181
+FK P ++ V+WTA+ISGY V+ GLKL M G +R + S+ ++VL
Sbjct: 407 LIFKSLPQRTTVSWTALISGY-----VQKGLHGAGLKLFTKMRGSNLRADQSTFATVLKA 461
Query: 182 CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTW 241
+ +SL LGKQ+H + +S ++ + + L+ MY KCG ++DA ++F E+ ++ V+W
Sbjct: 462 SASFASLLLGKQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIKDAVQVFEEMPDRNAVSW 521
Query: 242 NAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN 301
NA+IS +A +G GE A+ F KM + G++PDS++ + +L AC+H G V+ G +YF +M
Sbjct: 522 NALISAHADNGDGEAAIGAFAKMIESGLQPDSVSILGVLTACSHCGFVEQGTEYFQAMSP 581
Query: 302 DYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAE 361
YGI K HY CM+DLLGR G+ EA L+ +MPF+P ++ ++L+ACR+HK LAE
Sbjct: 582 IYGITPKKKHYACMLDLLGRNGRFAEAEKLMDEMPFEPDEIMWSSVLNACRIHKNQSLAE 641
Query: 362 FAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTV 421
AA LF++ A YV ++NIYAA +W+ V ++ +M+E + K+P YSW+EV
Sbjct: 642 RAAEKLFSMEKLRDAAAYVSMSNIYAAAGEWEKVRDVKKAMRERGIKKVPAYSWVEVNHK 701
Query: 422 VHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKL 481
+H F S D+ HP I K+ EL ++ GY PD + V E++K + L +HSE+L
Sbjct: 702 IHVFSSNDQTHPNGDEIVRKINELTAEIEREGYKPDTSSVVQDVDEQMKIESLKYHSERL 761
Query: 482 AIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSC 541
A+AF LI P G PI V KNLR C DCH A K IS I KREI VRDT+RFHHF +G CSC
Sbjct: 762 AVAFALISTPEGCPIVVMKNLRACRDCHAAIKLISKIVKREITVRDTSRFHHFSEGVCSC 821
Query: 542 GDYW 545
GDYW
Sbjct: 822 GDYW 825
Score = 123 bits (308), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 82/275 (29%), Positives = 135/275 (49%), Gaps = 16/275 (5%)
Query: 69 DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAP 128
DT N ++ +++ ++ AR ++ MP KN+VS + MISG+++ G + A +LF P
Sbjct: 47 DTCRSNFIVEDLLRRGQVSAARKVYDEMPHKNTVSTNTMISGHVKTGDVSSARDLFDAMP 106
Query: 129 VKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLG--IRPNASSLSSVLLGCSHLS 186
++VV WT ++ Y + NS ++ KL R M P+ + +++L GC+
Sbjct: 107 DRTVVTWTILMGWYAR-----NSHFDEAFKLFRQMCRSSSCTLPDHVTFTTLLPGCNDAV 161
Query: 187 SLQLGKQVHQLVFKSPLCKDT----TALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWN 242
QVH K L DT T L+ YC+ L+ AC LF EI KD VT+N
Sbjct: 162 PQNAVGQVHAFAVK--LGFDTNPFLTVSNVLLKSYCEVRRLDLACVLFEEIPEKDSVTFN 219
Query: 243 AMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGI-QYFDSMVN 301
+I+GY + G +++ LF KM+ G +P TF +L A GL D + Q ++
Sbjct: 220 TLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLKAV--VGLHDFALGQQLHALSV 277
Query: 302 DYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 336
G + ++D + +++E L +MP
Sbjct: 278 TTGFSRDASVGNQILDFYSKHDRVLETRMLFDEMP 312
Score = 97.4 bits (241), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 75/319 (23%), Positives = 136/319 (42%), Gaps = 49/319 (15%)
Query: 19 QRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMIS 78
+RG++ A++++D++P + VS N M+S + + DV +A D F +P + +W ++
Sbjct: 60 RRGQVSAARKVYDEMPHKNTVSTNTMISG-HVKTGDVSSARDLFDAMPDRTVVTWTILMG 118
Query: 79 GFVQKKNMAKARDLFLAMPEKNS------VSWSAMISG---------------------- 110
+ + + +A LF M +S V+++ ++ G
Sbjct: 119 WYARNSHFDEAFKLFRQMCRSSSCTLPDHVTFTTLLPGCNDAVPQNAVGQVHAFAVKLGF 178
Query: 111 ---------------YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAED 155
Y E +LD A LF+ P K V + +I+GY K G S
Sbjct: 179 DTNPFLTVSNVLLKSYCEVRRLDLACVLFEEIPEKDSVTFNTLITGYEKDGLYTES---- 234
Query: 156 GLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLIS 215
+ L M G +P+ + S VL L LG+Q+H L + +D + ++
Sbjct: 235 -IHLFLKMRQSGHQPSDFTFSGVLKAVVGLHDFALGQQLHALSVTTGFSRDASVGNQILD 293
Query: 216 MYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSIT 275
Y K + + LF E+ D V++N +IS Y+Q + E +L F +M+ G +
Sbjct: 294 FYSKHDRVLETRMLFDEMPELDFVSYNVVISSYSQADQYEASLHFFREMQCMGFDRRNFP 353
Query: 276 FVALLLACNHAGLVDLGIQ 294
F +L + + +G Q
Sbjct: 354 FATMLSIAANLSSLQMGRQ 372
Score = 70.5 bits (171), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 77/335 (22%), Positives = 145/335 (43%), Gaps = 70/335 (20%)
Query: 4 KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQ 63
+TTV+W ++++G+ Q+G +LF K+ ++ + + +L
Sbjct: 415 RTTVSWTALISGYV-QKGLHGAGLKLFTKMRGSNLRADQSTFATVL-------------- 459
Query: 64 RLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVEL 123
K +AS+ +++ G + ++ +L +N S S ++ Y +CG + AV++
Sbjct: 460 ----KASASFASLLLGKQLHAFIIRSGNL------ENVFSGSGLVDMYAKCGSIKDAVQV 509
Query: 124 FKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCS 183
F+ P ++ V+W A+IS + +N E + MI G++P++ S+ VL CS
Sbjct: 510 FEEMPDRNAVSWNALIS-----AHADNGDGEAAIGAFAKMIESGLQPDSVSILGVLTACS 564
Query: 184 HLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNA 243
H ++ G + Q + SP+ +TP Y AC
Sbjct: 565 HCGFVEQGTEYFQAM--SPI----YGITPKKKHY--------AC---------------- 594
Query: 244 MISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN---HAGLVDLGIQYFDSMV 300
M+ ++G+ +A +L D+M E PD I + ++L AC + L + + SM
Sbjct: 595 MLDLLGRNGRFAEAEKLMDEMPFE---PDEIMWSSVLNACRIHKNQSLAERAAEKLFSME 651
Query: 301 NDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335
AA Y M ++ AG+ + D+ K M
Sbjct: 652 KLRDAAA----YVSMSNIYAAAGEWEKVRDVKKAM 682
Score = 46.2 bits (108), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 82/347 (23%), Positives = 134/347 (38%), Gaps = 51/347 (14%)
Query: 192 KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQH 251
++V + K+ DT ++ + G + A K++ E+ K+ V+ N MISG+ +
Sbjct: 33 RRVDARIIKTGFDTDTCRSNFIVEDLLRRGQVSAARKVYDEMPHKNTVSTNTMISGHVKT 92
Query: 252 GKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDH 311
G A LFD M D + +T+ L+ D + F M PDH
Sbjct: 93 GDVSSARDLFDAMPDRTV----VTWTILMGWYARNSHFDEAFKLFRQMCRSSSCTL-PDH 147
Query: 312 YTCMVDLLGRAGKLVE-AVDLIK----KMPFKPQP--AIFGTLL-SACRVHKRLDLAEFA 363
T L G + + AV + K+ F P + LL S C V +RLDL
Sbjct: 148 VTFTTLLPGCNDAVPQNAVGQVHAFAVKLGFDTNPFLTVSNVLLKSYCEV-RRLDL---- 202
Query: 364 AMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPG---YSWIEVGT 420
A LF P + + L Y + + + L M+++ P +S +
Sbjct: 203 ACVLFEEIPEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSG--HQPSDFTFSGVLKAV 260
Query: 421 V-VHEFRSGDRVHP------------------ELVSIHEKLKELEKRMKLAGYVPDLEFA 461
V +H+F G ++H + S H+++ LE RM L +P+L+F
Sbjct: 261 VGLHDFALGQQLHALSVTTGFSRDASVGNQILDFYSKHDRV--LETRM-LFDEMPELDFV 317
Query: 462 LHAV------GEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNL 502
+ V + E L F E + F P T + + NL
Sbjct: 318 SYNVVISSYSQADQYEASLHFFREMQCMGFDRRNFPFATMLSIAANL 364
>sp|Q9FJY7|PP449_ARATH Pentatricopeptide repeat-containing protein At5g66520
OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1
Length = 620
Score = 421 bits (1082), Expect = e-117, Method: Compositional matrix adjust.
Identities = 224/547 (40%), Positives = 328/547 (59%), Gaps = 13/547 (2%)
Query: 6 TVNWNSVLAGFA----KQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNS-DDVVAAFD 60
T WN ++ GF+ +R L + L P +++ +C L++ ++
Sbjct: 80 TFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAFEETTQIHA 139
Query: 61 FFQRLPIK-DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDK 119
+L + D + N++I+ + N A LF +PE + VSW+++I GY++ G++D
Sbjct: 140 QITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAGKMDI 199
Query: 120 AVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVL 179
A+ LF+ K+ ++WT MISGY V+ ++ L+L M + P+ SL++ L
Sbjct: 200 ALTLFRKMAEKNAISWTTMISGY-----VQADMNKEALQLFHEMQNSDVEPDNVSLANAL 254
Query: 180 LGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVV 239
C+ L +L+ GK +H + K+ + D+ LI MY KCG++E+A ++F I++K V
Sbjct: 255 SACAQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQ 314
Query: 240 TWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSM 299
W A+ISGYA HG G +A+ F +M+ G+KP+ ITF A+L AC++ GLV+ G F SM
Sbjct: 315 AWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLIFYSM 374
Query: 300 VNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDL 359
DY + +HY C+VDLLGRAG L EA I++MP KP I+G LL ACR+HK ++L
Sbjct: 375 ERDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNIEL 434
Query: 360 AEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVG 419
E L ++P + G YV ANI+A KKWD A R MKE V K+PG S I +
Sbjct: 435 GEEIGEILIAIDPYH-GGRYVHKANIHAMDKKWDKAAETRRLMKEQGVAKVPGCSTISLE 493
Query: 420 TVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDL-EFALHAVGEEVKEQLLLFHS 478
HEF +GDR HPE+ I K + + ++++ GYVP+L E L V ++ +E ++ HS
Sbjct: 494 GTTHEFLAGDRSHPEIEKIQSKWRIMRRKLEENGYVPELEEMLLDLVDDDEREAIVHQHS 553
Query: 479 EKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGT 538
EKLAI +GLIK GT IR+ KNLRVC DCH+ TK IS I KR+I++RD TRFHHF+DG
Sbjct: 554 EKLAITYGLIKTKPGTIIRIMKNLRVCKDCHKVTKLISKIYKRDIVMRDRTRFHHFRDGK 613
Query: 539 CSCGDYW 545
CSCGDYW
Sbjct: 614 CSCGDYW 620
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 67/261 (25%), Positives = 109/261 (41%), Gaps = 48/261 (18%)
Query: 165 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 224
+ N S L CS L KQ+H + K+ L +D+ A+T +S +C
Sbjct: 7 SFSLEHNLYETMSCLQRCSKQEEL---KQIHARMLKTGLMQDSYAITKFLS-FCISSTSS 62
Query: 225 D----ACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 280
D A +F R D WN MI G++ + E++L L+ +M ++ TF +LL
Sbjct: 63 DFLPYAQIVFDGFDRPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLL 122
Query: 281 LACN-----------HAGLVDLG----IQYFDSMVNDYGIAA-------------KPD-- 310
AC+ HA + LG + +S++N Y + +PD
Sbjct: 123 KACSNLSAFEETTQIHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDV 182
Query: 311 HYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLD---LAEFAAMNL 367
+ ++ +AGK+ A+ L +KM K AI T + + V ++ L F M
Sbjct: 183 SWNSVIKGYVKAGKMDIALTLFRKMAEK--NAISWTTMISGYVQADMNKEALQLFHEMQN 240
Query: 368 FNLNPANAAGCYVQLANIYAA 388
++ P N V LAN +A
Sbjct: 241 SDVEPDN-----VSLANALSA 256
>sp|Q9LNU6|PPR53_ARATH Pentatricopeptide repeat-containing protein At1g20230
OS=Arabidopsis thaliana GN=PCMP-H21 PE=2 SV=2
Length = 760
Score = 421 bits (1082), Expect = e-117, Method: Compositional matrix adjust.
Identities = 221/551 (40%), Positives = 336/551 (60%), Gaps = 20/551 (3%)
Query: 7 VNWNSVLAGFAKQRGKLKDAQELFDKIPQ----PDVVSYNIMLSCI----LLNSDDVVAA 58
V+WN +L+GF + G K+A +F KI PD V+ + +L + +LN ++
Sbjct: 218 VSWNGILSGFNRS-GYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIHG 276
Query: 59 FDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLD 118
+ Q L +KD + MI + + ++ LF + +A I+G G +D
Sbjct: 277 YVIKQGL-LKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVD 335
Query: 119 KAVELFKVAPVKS----VVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASS 174
KA+E+F++ ++ VV+WT++I+G +N + L+L R M G++PN +
Sbjct: 336 KALEMFELFKEQTMELNVVSWTSIIAGC-----AQNGKDIEALELFREMQVAGVKPNHVT 390
Query: 175 LSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ 234
+ S+L C ++++L G+ H + L + + LI MY KCG + + +F +
Sbjct: 391 IPSMLPACGNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMP 450
Query: 235 RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ 294
K++V WN++++G++ HGK ++ + +F+ + +KPD I+F +LL AC GL D G +
Sbjct: 451 TKNLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWK 510
Query: 295 YFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVH 354
YF M +YGI + +HY+CMV+LLGRAGKL EA DLIK+MPF+P ++G LL++CR+
Sbjct: 511 YFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQ 570
Query: 355 KRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYS 414
+DLAE AA LF+L P N G YV L+NIYAA W +V IR M+ + K PG S
Sbjct: 571 NNVDLAEIAAEKLFHLEPENP-GTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCS 629
Query: 415 WIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLL 474
WI+V V+ +GD+ HP++ I EK+ E+ K M+ +G+ P+L+FALH V E+ +EQ+L
Sbjct: 630 WIQVKNRVYTLLAGDKSHPQIDQITEKMDEISKEMRKSGHRPNLDFALHDVEEQEQEQML 689
Query: 475 LFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHF 534
HSEKLA+ FGL+ P GTP++V KNLR+CGDCH K+IS+ REI +RDT RFHHF
Sbjct: 690 WGHSEKLAVVFGLLNTPDGTPLQVIKNLRICGDCHAVIKFISSYAGREIFIRDTNRFHHF 749
Query: 535 KDGTCSCGDYW 545
KDG CSCGD+W
Sbjct: 750 KDGICSCGDFW 760
Score = 75.9 bits (185), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 100/205 (48%), Gaps = 6/205 (2%)
Query: 83 KKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGY 142
K A AR L +S + +I+ Y + A + + P ++ +++++I
Sbjct: 33 KTTQAHARILKSGAQNDGYIS-AKLIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYAL 91
Query: 143 MKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSP 202
K S + + M G+ P++ L ++ C+ LS+ ++GKQ+H + S
Sbjct: 92 TKAKLFTQS-----IGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSG 146
Query: 203 LCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFD 262
L D + MY +CG + DA K+F + KDVVT +A++ YA+ G E+ +R+
Sbjct: 147 LDMDAFVQGSMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILS 206
Query: 263 KMKDEGMKPDSITFVALLLACNHAG 287
+M+ G++ + +++ +L N +G
Sbjct: 207 EMESSGIEANIVSWNGILSGFNRSG 231
Score = 38.1 bits (87), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 69/141 (48%), Gaps = 18/141 (12%)
Query: 1 MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQ----PDVVSYNIMLS-CILLNSDDV 55
M K V WNS++ GF+ GK K+ +F+ + + PD +S+ +LS C + D
Sbjct: 449 MPTKNLVCWNSLMNGFS-MHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTD- 506
Query: 56 VAAFDFFQRLP----IKDT-ASWNTMISGFVQKKNMAKARDLFLAMP-EKNSVSWSAMIS 109
+ +F+ + IK ++ M++ + + +A DL MP E +S W A+++
Sbjct: 507 -EGWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLN 565
Query: 110 GYIECGQLDKAVELFKVAPVK 130
C +L V+L ++A K
Sbjct: 566 ---SC-RLQNNVDLAEIAAEK 582
>sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070
OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1
Length = 741
Score = 418 bits (1074), Expect = e-116, Method: Compositional matrix adjust.
Identities = 228/568 (40%), Positives = 329/568 (57%), Gaps = 48/568 (8%)
Query: 19 QRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMIS 78
Q G+L+DA ++FDK P DVVSY ++ + + A F +P+KD SWN MIS
Sbjct: 181 QNGRLEDAHKVFDKSPHRDVVSYTALIKG-YASRGYIENAQKLFDEIPVKDVVSWNAMIS 239
Query: 79 GFVQKKNMAKARDLFLAM------PEKNSVS--------------------W-------- 104
G+ + N +A +LF M P+++++ W
Sbjct: 240 GYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGS 299
Query: 105 -----SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKL 159
+A+I Y +CG+L+ A LF+ P K V++W +I GY + + L L
Sbjct: 300 NLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYK-----EALLL 354
Query: 160 LRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK--SPLCKDTTALTPLISMY 217
+ M+ G PN ++ S+L C+HL ++ +G+ +H + K + ++ T LI MY
Sbjct: 355 FQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMY 414
Query: 218 CKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFV 277
KCGD+E A ++F I K + +WNAMI G+A HG+ + + LF +M+ G++PD ITFV
Sbjct: 415 AKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFV 474
Query: 278 ALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPF 337
LL AC+H+G++DLG F +M DY + K +HY CM+DLLG +G EA ++I M
Sbjct: 475 GLLSACSHSGMLDLGRHIFRTMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEM 534
Query: 338 KPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVAR 397
+P I+ +LL AC++H ++L E A NL + P N G YV L+NIYA+ +W++VA+
Sbjct: 535 EPDGVIWCSLLKACKMHGNVELGESFAENLIKIEPENP-GSYVLLSNIYASAGRWNEVAK 593
Query: 398 IRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPD 457
R + + + K+PG S IE+ +VVHEF GD+ HP I+ L+E+E ++ AG+VPD
Sbjct: 594 TRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFVPD 653
Query: 458 LEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISA 517
L + EE KE L HSEKLAIAFGLI GT + + KNLRVC +CH ATK IS
Sbjct: 654 TSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISK 713
Query: 518 IEKREIIVRDTTRFHHFKDGTCSCGDYW 545
I KREII RD TRFHHF+DG CSC DYW
Sbjct: 714 IYKREIIARDRTRFHHFRDGVCSCNDYW 741
Score = 163 bits (412), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 93/299 (31%), Positives = 159/299 (53%), Gaps = 15/299 (5%)
Query: 74 NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVV 133
++IS +VQ + A +F P ++ VS++A+I GY G ++ A +LF PVK VV
Sbjct: 173 TSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVV 232
Query: 134 AWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ 193
+W AMISGY + G ++ L+L + M+ +RP+ S++ +V+ C+ S++LG+Q
Sbjct: 233 SWNAMISGYAETGNY-----KEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQ 287
Query: 194 VHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGK 253
VH + + + LI +Y KCG+LE AC LF + KDV++WN +I GY
Sbjct: 288 VHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNL 347
Query: 254 GEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ---YFDSMVNDYGIAAKPD 310
++AL LF +M G P+ +T +++L AC H G +D+G Y D + G+
Sbjct: 348 YKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLK--GVTNASS 405
Query: 311 HYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFN 369
T ++D+ + G + A + + K + + ++ +H R D A+ +LF+
Sbjct: 406 LRTSLIDMYAKCGDIEAAHQVFNSILHKSLSS-WNAMIFGFAMHGRAD----ASFDLFS 459
Score = 120 bits (301), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 120/253 (47%), Gaps = 37/253 (14%)
Query: 117 LDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLS 176
L A+ +FK +++ W M G+ +S LKL MI LG+ PN+ +
Sbjct: 84 LPYAISVFKTIQEPNLLIWNTMFRGH-----ALSSDPVSALKLYVCMISLGLLPNSYTFP 138
Query: 177 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK-------- 228
VL C+ + + G+Q+H V K D T LISMY + G LEDA K
Sbjct: 139 FVLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHR 198
Query: 229 -----------------------LFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMK 265
LF EI KDVV+WNAMISGYA+ G ++AL LF M
Sbjct: 199 DVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMM 258
Query: 266 DEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKL 325
++PD T V ++ AC +G ++LG Q ++D+G + ++DL + G+L
Sbjct: 259 KTNVRPDESTMVTVVSACAQSGSIELGRQ-VHLWIDDHGFGSNLKIVNALIDLYSKCGEL 317
Query: 326 VEAVDLIKKMPFK 338
A L +++P+K
Sbjct: 318 ETACGLFERLPYK 330
>sp|O81767|PP348_ARATH Pentatricopeptide repeat-containing protein At4g33990
OS=Arabidopsis thaliana GN=EMB2758 PE=3 SV=2
Length = 823
Score = 414 bits (1065), Expect = e-115, Method: Compositional matrix adjust.
Identities = 223/538 (41%), Positives = 319/538 (59%), Gaps = 23/538 (4%)
Query: 21 GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK----DTASWNTM 76
G+L+D Q++FD++ D++S+N ++ LN + + A FQ + + D + ++
Sbjct: 296 GRLRDCQKVFDRMYVRDLISWNSIIKAYELN-EQPLRAISLFQEMRLSRIQPDCLTLISL 354
Query: 77 ISGFVQKKNMAKARDLFLAMPEKNSVSW--------SAMISGYIECGQLDKAVELFKVAP 128
S Q ++ R + K W +A++ Y + G +D A +F P
Sbjct: 355 ASILSQLGDIRACRSVQGFTLRKG---WFLEDITIGNAVVVMYAKLGLVDSARAVFNWLP 411
Query: 129 VKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLG-IRPNASSLSSVLLGCSHLSS 187
V++W +ISGY +N +A + +++ +M G I N + SVL CS +
Sbjct: 412 NTDVISWNTIISGY-----AQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGA 466
Query: 188 LQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISG 247
L+ G ++H + K+ L D +T L MY KCG LEDA LF +I R + V WN +I+
Sbjct: 467 LRQGMKLHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSVPWNTLIAC 526
Query: 248 YAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAA 307
+ HG GEKA+ LF +M DEG+KPD ITFV LL AC+H+GLVD G F+ M DYGI
Sbjct: 527 HGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQWCFEMMQTDYGITP 586
Query: 308 KPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNL 367
HY CMVD+ GRAG+L A+ IK M +P +I+G LLSACRVH +DL + A+ +L
Sbjct: 587 SLKHYGCMVDMYGRAGQLETALKFIKSMSLQPDASIWGALLSACRVHGNVDLGKIASEHL 646
Query: 368 FNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRS 427
F + P + G +V L+N+YA+ KW+ V IR + K PG+S +EV V F +
Sbjct: 647 FEVEPEH-VGYHVLLSNMYASAGKWEGVDEIRSIAHGKGLRKTPGWSSMEVDNKVEVFYT 705
Query: 428 GDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGL 487
G++ HP ++ +L L+ ++K+ GYVPD F L V ++ KE +L+ HSE+LAIAF L
Sbjct: 706 GNQTHPMYEEMYRELTALQAKLKMIGYVPDHRFVLQDVEDDEKEHILMSHSERLAIAFAL 765
Query: 488 IKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
I P T IR+FKNLRVCGDCH TK+IS I +REIIVRD+ RFHHFK+G CSCGDYW
Sbjct: 766 IATPAKTTIRIFKNLRVCGDCHSVTKFISKITEREIIVRDSNRFHHFKNGVCSCGDYW 823
Score = 85.9 bits (211), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 69/267 (25%), Positives = 122/267 (45%), Gaps = 20/267 (7%)
Query: 21 GKLKDAQELFDKIPQPDVVSYNIMLSCI--LLNSDDVVAAFDFFQRLPIKDTASWNTMIS 78
G + A+ FD I DV ++N+M+S NS +V+ F F L T + T S
Sbjct: 100 GNVALARHTFDHIQNRDVYAWNLMISGYGRAGNSSEVIRCFSLFM-LSSGLTPDYRTFPS 158
Query: 79 GFVQKKNMAKARDLFLAMPEKNSVSW-----SAMISGYIECGQLDKAVELFKVAPVKSVV 133
+ + + + K W +++I Y + A LF PV+ +
Sbjct: 159 VLKACRTVIDGNKIH-CLALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMG 217
Query: 134 AWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRP-NASSLSSVLLGCSHLSSLQLGK 192
+W AMISGY + G A++ L L G+R ++ ++ S+L C+ G
Sbjct: 218 SWNAMISGYCQSGN-----AKEALTLSN-----GLRAMDSVTVVSLLSACTEAGDFNRGV 267
Query: 193 QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHG 252
+H K L + LI +Y + G L D K+F + +D+++WN++I Y +
Sbjct: 268 TIHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELNE 327
Query: 253 KGEKALRLFDKMKDEGMKPDSITFVAL 279
+ +A+ LF +M+ ++PD +T ++L
Sbjct: 328 QPLRAISLFQEMRLSRIQPDCLTLISL 354
Score = 84.7 bits (208), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/233 (27%), Positives = 109/233 (46%), Gaps = 20/233 (8%)
Query: 107 MISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLR----M 162
+++ Y G + A F + V AW MISGY + G + +++R
Sbjct: 92 LVNLYCYLGNVALARHTFDHIQNRDVYAWNLMISGYGRAG--------NSSEVIRCFSLF 143
Query: 163 MIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGD 222
M+ G+ P+ + SVL C + G ++H L K D LI +Y +
Sbjct: 144 MLSSGLTPDYRTFPSVLKACRTVID---GNKIHCLALKFGFMWDVYVAASLIHLYSRYKA 200
Query: 223 LEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA 282
+ +A LF E+ +D+ +WNAMISGY Q G ++AL L + ++ DS+T V+LL A
Sbjct: 201 VGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEALTLSNGLR----AMDSVTVVSLLSA 256
Query: 283 CNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335
C AG + G+ S +G+ ++ ++DL G+L + + +M
Sbjct: 257 CTEAGDFNRGVT-IHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRM 308
Score = 63.2 bits (152), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 53/101 (52%), Gaps = 1/101 (0%)
Query: 184 HLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNA 243
+ ++LQ K +H + S ++ L+++YC G++ A F IQ +DV WN
Sbjct: 63 YCTNLQSAKCLHARLVVSKQIQNVCISAKLVNLYCYLGNVALARHTFDHIQNRDVYAWNL 122
Query: 244 MISGYAQHGKGEKALRLFDK-MKDEGMKPDSITFVALLLAC 283
MISGY + G + +R F M G+ PD TF ++L AC
Sbjct: 123 MISGYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKAC 163
Score = 36.2 bits (82), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 68/148 (45%), Gaps = 13/148 (8%)
Query: 13 LAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP--IK-D 69
LA + G+L+DA LF +IP+ + V +N +++C + A F + L +K D
Sbjct: 492 LADMYGKCGRLEDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPD 551
Query: 70 TASWNTMISGFVQKKNMAKARDLFLAMPEKNSVS-----WSAMISGYIECGQLDKAVELF 124
++ T++S + + + F M ++ + M+ Y GQL+ A++
Sbjct: 552 HITFVTLLSACSHSGLVDEGQWCFEMMQTDYGITPSLKHYGCMVDMYGRAGQLETALKFI 611
Query: 125 K---VAPVKSVVAWTAMISGYMKFGYVE 149
K + P S+ W A++S G V+
Sbjct: 612 KSMSLQPDASI--WGALLSACRVHGNVD 637
>sp|O23169|PP353_ARATH Pentatricopeptide repeat-containing protein At4g37170
OS=Arabidopsis thaliana GN=PCMP-H5 PE=3 SV=1
Length = 691
Score = 414 bits (1063), Expect = e-114, Method: Compositional matrix adjust.
Identities = 223/583 (38%), Positives = 329/583 (56%), Gaps = 48/583 (8%)
Query: 3 VKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFF 62
V V WN +L +AK G L DA+++FD++P D+ S+N+M++ + A F
Sbjct: 117 VPGIVIWNRLLRMYAKC-GSLVDARKVFDEMPNRDLCSWNVMVNG-YAEVGLLEEARKLF 174
Query: 63 QRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP------------------------- 97
+ KD+ SW M++G+V+K +A L+ M
Sbjct: 175 DEMTEKDSYSWTAMVTGYVKKDQPEEALVLYSLMQRVPNSRPNIFTVSIAVAAAAAVKCI 234
Query: 98 ---------------EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGY 142
+ + V WS+++ Y +CG +D+A +F K VV+WT+MI Y
Sbjct: 235 RRGKEIHGHIVRAGLDSDEVLWSSLMDMYGKCGCIDEARNIFDKIVEKDVVSWTSMIDRY 294
Query: 143 MKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSP 202
K + W E G L ++G RPN + + VL C+ L++ +LGKQVH + +
Sbjct: 295 FK----SSRWRE-GFSLFSELVGSCERPNEYTFAGVLNACADLTTEELGKQVHGYMTRVG 349
Query: 203 LCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFD 262
+ A + L+ MY KCG++E A + + D+V+W ++I G AQ+G+ ++AL+ FD
Sbjct: 350 FDPYSFASSSLVDMYTKCGNIESAKHVVDGCPKPDLVSWTSLIGGCAQNGQPDEALKYFD 409
Query: 263 KMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRA 322
+ G KPD +TFV +L AC HAGLV+ G+++F S+ + ++ DHYTC+VDLL R+
Sbjct: 410 LLLKSGTKPDHVTFVNVLSACTHAGLVEKGLEFFYSITEKHRLSHTSDHYTCLVDLLARS 469
Query: 323 GKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQL 382
G+ + +I +MP KP ++ ++L C + +DLAE AA LF + P N YV +
Sbjct: 470 GRFEQLKSVISEMPMKPSKFLWASVLGGCSTYGNIDLAEEAAQELFKIEPENPV-TYVTM 528
Query: 383 ANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKL 442
ANIYAA KW++ ++R M+E V K PG SW E+ H F + D HP I E L
Sbjct: 529 ANIYAAAGKWEEEGKMRKRMQEIGVTKRPGSSWTEIKRKRHVFIAADTSHPMYNQIVEFL 588
Query: 443 KELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNL 502
+EL K+MK GYVP LH V +E KE+ L++HSEKLA+AF ++ GT I+VFKNL
Sbjct: 589 RELRKKMKEEGYVPATSLVLHDVEDEQKEENLVYHSEKLAVAFAILSTEEGTAIKVFKNL 648
Query: 503 RVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
R C DCH A K+IS I KR+I VRD+TRFH F++G CSCGDYW
Sbjct: 649 RSCVDCHGAIKFISNITKRKITVRDSTRFHCFENGQCSCGDYW 691
Score = 84.7 bits (208), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 76/128 (59%), Gaps = 7/128 (5%)
Query: 156 GLKLLR---MMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTP 212
G KLLR ++G +P AS+ +++ CS +L+ GK+VH+ + S
Sbjct: 66 GQKLLREAVQLLGRAKKPPASTYCNLIQVCSQTRALEEGKKVHEHIRTSGFVPGIVIWNR 125
Query: 213 LISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPD 272
L+ MY KCG L DA K+F E+ +D+ +WN M++GYA+ G E+A +LFD+M ++ D
Sbjct: 126 LLRMYAKCGSLVDARKVFDEMPNRDLCSWNVMVNGYAEVGLLEEARKLFDEMTEK----D 181
Query: 273 SITFVALL 280
S ++ A++
Sbjct: 182 SYSWTAMV 189
>sp|Q9CAA8|PP108_ARATH Putative pentatricopeptide repeat-containing protein At1g68930
OS=Arabidopsis thaliana GN=PCMP-H22 PE=3 SV=1
Length = 743
Score = 412 bits (1060), Expect = e-114, Method: Compositional matrix adjust.
Identities = 226/564 (40%), Positives = 318/564 (56%), Gaps = 47/564 (8%)
Query: 21 GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
G + DA+++F + + V YN ++ LL + A F+ + KD+ SW MI G
Sbjct: 188 GCISDAKKVFYGLDDRNTVMYNSLMGG-LLACGMIEDALQLFRGME-KDSVSWAAMIKGL 245
Query: 81 VQKKNMAKARDLFLAMP---------------------------------------EKNS 101
Q +A + F M + +
Sbjct: 246 AQNGLAKEAIECFREMKVQGLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQDHI 305
Query: 102 VSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLR 161
SA+I Y +C L A +F K+VV+WTAM+ GY + G AE+ +K+
Sbjct: 306 YVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGR-----AEEAVKIFL 360
Query: 162 MMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCG 221
M GI P+ +L + C+++SSL+ G Q H S L T L+++Y KCG
Sbjct: 361 DMQRSGIDPDHYTLGQAISACANVSSLEEGSQFHGKAITSGLIHYVTVSNSLVTLYGKCG 420
Query: 222 DLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLL 281
D++D+ +LF E+ +D V+W AM+S YAQ G+ + ++LFDKM G+KPD +T ++
Sbjct: 421 DIDDSTRLFNEMNVRDAVSWTAMVSAYAQFGRAVETIQLFDKMVQHGLKPDGVTLTGVIS 480
Query: 282 ACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQP 341
AC+ AGLV+ G +YF M ++YGI HY+CM+DL R+G+L EA+ I MPF P
Sbjct: 481 ACSRAGLVEKGQRYFKLMTSEYGIVPSIGHYSCMIDLFSRSGRLEEAMRFINGMPFPPDA 540
Query: 342 AIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLS 401
+ TLLSACR L++ ++AA +L L+P + AG Y L++IYA+ KWD VA++R
Sbjct: 541 IGWTTLLSACRNKGNLEIGKWAAESLIELDPHHPAG-YTLLSSIYASKGKWDSVAQLRRG 599
Query: 402 MKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFA 461
M+E NV K PG SWI+ +H F + D P L I+ KL+EL ++ GY PD F
Sbjct: 600 MREKNVKKEPGQSWIKWKGKLHSFSADDESSPYLDQIYAKLEELNNKIIDNGYKPDTSFV 659
Query: 462 LHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKR 521
H V E VK ++L +HSE+LAIAFGLI VP G PIRV KNLRVC DCH ATK+IS++ R
Sbjct: 660 HHDVEEAVKVKMLNYHSERLAIAFGLIFVPSGQPIRVGKNLRVCVDCHNATKHISSVTGR 719
Query: 522 EIIVRDTTRFHHFKDGTCSCGDYW 545
EI+VRD RFH FKDGTCSCGD+W
Sbjct: 720 EILVRDAVRFHRFKDGTCSCGDFW 743
Score = 121 bits (304), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 104/445 (23%), Positives = 184/445 (41%), Gaps = 102/445 (22%)
Query: 6 TVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD-FFQR 64
T +N+++ +A + A+ +FD+IPQP++ S+N +L + + +++ + F++
Sbjct: 41 TFLYNNIVHAYALMKSSTY-ARRVFDRIPQPNLFSWNNLL--LAYSKAGLISEMESTFEK 97
Query: 65 LPIKDTASWNTMISGFVQKKNMAKA--------RDL-----------FLAMPEKNS-VSW 104
LP +D +WN +I G+ + A RD L + N VS
Sbjct: 98 LPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMRDFSANLTRVTLMTMLKLSSSNGHVSL 157
Query: 105 SAMISG--------------------YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMK 144
I G Y G + A ++F ++ V + +++ G +
Sbjct: 158 GKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKKVFYGLDDRNTVMYNSLMGGLLA 217
Query: 145 FGYVEN-------------SW------------AEDGLKLLRMMIGLGIRPNASSLSSVL 179
G +E+ SW A++ ++ R M G++ + SVL
Sbjct: 218 CGMIEDALQLFRGMEKDSVSWAAMIKGLAQNGLAKEAIECFREMKVQGLKMDQYPFGSVL 277
Query: 180 LGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVV 239
C L ++ GKQ+H + ++ + LI MYCKC L A +F +++K+VV
Sbjct: 278 PACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVV 337
Query: 240 TWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYF--- 296
+W AM+ GY Q G+ E+A+++F M+ G+ PD T + AC + ++ G Q+
Sbjct: 338 SWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISACANVSSLEEGSQFHGKA 397
Query: 297 ------------DSMVNDYGIAAKPD---------------HYTCMVDLLGRAGKLVEAV 329
+S+V YG D +T MV + G+ VE +
Sbjct: 398 ITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNVRDAVSWTAMVSAYAQFGRAVETI 457
Query: 330 DLIKKM---PFKPQPAIFGTLLSAC 351
L KM KP ++SAC
Sbjct: 458 QLFDKMVQHGLKPDGVTLTGVISAC 482
Score = 100 bits (249), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 91/356 (25%), Positives = 144/356 (40%), Gaps = 69/356 (19%)
Query: 60 DFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDK 119
+ + LP +T +N ++ + K+ AR +F +P+ N SW+ ++ Y + G + +
Sbjct: 31 NIIRALPYPETFLYNNIVHAYALMKSSTYARRVFDRIPQPNLFSWNNLLLAYSKAGLISE 90
Query: 120 AVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVL 179
F+ P + V W +I GY G V + MM +L ++L
Sbjct: 91 MESTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNT----MMRDFSANLTRVTLMTML 146
Query: 180 LGCSHLSSLQLGKQVHQLVFK----------SPLC---------------------KDTT 208
S + LGKQ+H V K SPL ++T
Sbjct: 147 KLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKKVFYGLDDRNTV 206
Query: 209 ALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEG 268
L+ CG +EDA +LF ++ KD V+W AMI G AQ+G ++A+ F +MK +G
Sbjct: 207 MYNSLMGGLLACGMIEDALQLFRGME-KDSVSWAAMIKGLAQNGLAKEAIECFREMKVQG 265
Query: 269 MKPDSITFVALLLACNHAGLVDLGIQ--------------YFDSMVNDYGIAAKPDHY-- 312
+K D F ++L AC G ++ G Q Y S + D K HY
Sbjct: 266 LKMDQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCKCKCLHYAK 325
Query: 313 --------------TCMVDLLGRAGKLVEAVDL---IKKMPFKPQPAIFGTLLSAC 351
T MV G+ G+ EAV + +++ P G +SAC
Sbjct: 326 TVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISAC 381
Score = 37.7 bits (86), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 22/112 (19%), Positives = 54/112 (48%), Gaps = 4/112 (3%)
Query: 192 KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQH 251
K +H + ++ +T ++ Y A ++F I + ++ +WN ++ Y++
Sbjct: 26 KMIHGNIIRALPYPETFLYNNIVHAYALMKSSTYARRVFDRIPQPNLFSWNNLLLAYSKA 85
Query: 252 GKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDY 303
G + F+K+ D D +T+ L+ + +GLV ++ +++M+ D+
Sbjct: 86 GLISEMESTFEKLPDR----DGVTWNVLIEGYSLSGLVGAAVKAYNTMMRDF 133
Score = 35.0 bits (79), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 60/128 (46%), Gaps = 12/128 (9%)
Query: 1 MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQ----PDVVSYNIMLSCILLNSDDVV 56
MNV+ V+W ++++ +A Q G+ + +LFDK+ Q PD V+ ++S + V
Sbjct: 432 MNVRDAVSWTAMVSAYA-QFGRAVETIQLFDKMVQHGLKPDGVTLTGVISAC-SRAGLVE 489
Query: 57 AAFDFFQRLP-----IKDTASWNTMISGFVQKKNMAKARDLFLAMP-EKNSVSWSAMISG 110
+F+ + + ++ MI F + + +A MP +++ W+ ++S
Sbjct: 490 KGQRYFKLMTSEYGIVPSIGHYSCMIDLFSRSGRLEEAMRFINGMPFPPDAIGWTTLLSA 549
Query: 111 YIECGQLD 118
G L+
Sbjct: 550 CRNKGNLE 557
>sp|Q9LTV8|PP224_ARATH Pentatricopeptide repeat-containing protein At3g12770
OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1
Length = 694
Score = 412 bits (1058), Expect = e-114, Method: Compositional matrix adjust.
Identities = 213/545 (39%), Positives = 330/545 (60%), Gaps = 17/545 (3%)
Query: 10 NSVLAGFAKQRGKLKDAQELFDKIPQPD--VVSYNIMLSCILLNSDDVVAAFDFFQRLPI 67
N ++A +AK R +L A+ +F+ +P P+ +VS+ ++S N + + A F Q +
Sbjct: 158 NGLIALYAKCR-RLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKM 216
Query: 68 KDTASWNTMIS---GFVQKKNMAKARDLFLAMPEKN-SVSWSAMIS---GYIECGQLDKA 120
W ++S F +++ + R + ++ + + +IS Y +CGQ+ A
Sbjct: 217 DVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATA 276
Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLL 180
LF +++ W AMISGY K GY A + + + MI +RP+ S++S +
Sbjct: 277 KILFDKMKSPNLILWNAMISGYAKNGY-----AREAIDMFHEMINKDVRPDTISITSAIS 331
Query: 181 GCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVT 240
C+ + SL+ + +++ V +S D + LI M+ KCG +E A +F +DVV
Sbjct: 332 ACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVV 391
Query: 241 WNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV 300
W+AMI GY HG+ +A+ L+ M+ G+ P+ +TF+ LL+ACNH+G+V G +F+ M
Sbjct: 392 WSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWWFFNRMA 451
Query: 301 NDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLA 360
D+ I + HY C++DLLGRAG L +A ++IK MP +P ++G LLSAC+ H+ ++L
Sbjct: 452 -DHKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHVELG 510
Query: 361 EFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGT 420
E+AA LF+++P+N G YVQL+N+YAA + WD VA +R+ MKE + K G SW+EV
Sbjct: 511 EYAAQQLFSIDPSNT-GHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVEVRG 569
Query: 421 VVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEK 480
+ FR GD+ HP I +++ +E R+K G+V + + +LH + +E E+ L HSE+
Sbjct: 570 RLEAFRVGDKSHPRYEEIERQVEWIESRLKEGGFVANKDASLHDLNDEEAEETLCSHSER 629
Query: 481 LAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCS 540
+AIA+GLI P GTP+R+ KNLR C +CH ATK IS + REI+VRDT RFHHFKDG CS
Sbjct: 630 IAIAYGLISTPQGTPLRITKNLRACVNCHAATKLISKLVDREIVVRDTNRFHHFKDGVCS 689
Query: 541 CGDYW 545
CGDYW
Sbjct: 690 CGDYW 694
Score = 114 bits (285), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 80/348 (22%), Positives = 173/348 (49%), Gaps = 22/348 (6%)
Query: 21 GKLKDAQELFDKIPQPDVVSYNIMLSCILLNS--DDVVAAFDFFQRLPIK-DTASWNTMI 77
G + A+++FD +P+P + +N ++ N+ D + + Q + D+ ++ ++
Sbjct: 67 GDITFARQVFDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLL 126
Query: 78 SGFVQKKNMAKAR----DLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPV--KS 131
++ R +F + + + +I+ Y +C +L A +F+ P+ ++
Sbjct: 127 KACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERT 186
Query: 132 VVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLG 191
+V+WTA++S Y +N + L++ M + ++P+ +L SVL + L L+ G
Sbjct: 187 IVSWTAIVS-----AYAQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQG 241
Query: 192 KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQH 251
+ +H V K L + L L +MY KCG + A LF +++ +++ WNAMISGYA++
Sbjct: 242 RSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKN 301
Query: 252 GKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSM-VNDYGIAAKPD 310
G +A+ +F +M ++ ++PD+I+ + + AC G ++ ++ + +DY + D
Sbjct: 302 GYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDY----RDD 357
Query: 311 HY--TCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKR 356
+ + ++D+ + G VE L+ ++ ++ +H R
Sbjct: 358 VFISSALIDMFAKCGS-VEGARLVFDRTLDRDVVVWSAMIVGYGLHGR 404
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/257 (21%), Positives = 106/257 (41%), Gaps = 41/257 (15%)
Query: 1 MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
M + WN++++G+AK G ++A ++F ++ DV
Sbjct: 283 MKSPNLILWNAMISGYAKN-GYAREAIDMFHEMINKDVR--------------------- 320
Query: 61 FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVS----WSAMISGYIECGQ 116
DT S + IS Q ++ +AR ++ + + SA+I + +CG
Sbjct: 321 -------PDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGS 373
Query: 117 LDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLS 176
++ A +F + VV W+AMI GY G A + + L R M G+ PN +
Sbjct: 374 VEGARLVFDRTLDRDVVVWSAMIVGYGLHGR-----AREAISLYRAMERGGVHPNDVTFL 428
Query: 177 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF--LEIQ 234
+L+ C+H ++ G + + +I + + G L+ A ++ + +Q
Sbjct: 429 GLLMACNHSGMVREGWWFFNRMADHKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQ 488
Query: 235 RKDVVTWNAMISGYAQH 251
V W A++S +H
Sbjct: 489 -PGVTVWGALLSACKKH 504
Score = 58.2 bits (139), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 81/171 (47%), Gaps = 5/171 (2%)
Query: 173 SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLE 232
S +S++ +H + L KQ+H + L +T LI GD+ A ++F +
Sbjct: 22 SFYASLIDSATHKAQL---KQIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDD 78
Query: 233 IQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 292
+ R + WNA+I GY+++ + AL ++ M+ + PDS TF LL AC+ + +G
Sbjct: 79 LPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMG 138
Query: 293 IQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAI 343
++ + V G A ++ L + +L A + + +P P+ I
Sbjct: 139 -RFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPL-PERTI 187
>sp|Q8LK93|PP145_ARATH Pentatricopeptide repeat-containing protein At2g02980
OS=Arabidopsis thaliana GN=PCMP-H26 PE=2 SV=2
Length = 603
Score = 411 bits (1056), Expect = e-114, Method: Compositional matrix adjust.
Identities = 222/528 (42%), Positives = 311/528 (58%), Gaps = 14/528 (2%)
Query: 26 AQELFDKIPQPDVVSYNIMLS--CILLNSDDVVAAF-DFFQRLPIKDTASWNTMISGFVQ 82
A+ LF+ + +PD+V +N M N +V + F + + + D ++ +++
Sbjct: 82 ARHLFEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLLKACAV 141
Query: 83 KKNMAKARDLF-LAMP---EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAM 138
K + + R L L+M + N +I+ Y EC +D A +F VV + AM
Sbjct: 142 AKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARCVFDRIVEPCVVCYNAM 201
Query: 139 ISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLV 198
I+GY + + + L L R M G ++PN +L SVL C+ L SL LGK +H+
Sbjct: 202 ITGYAR-----RNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKWIHKYA 256
Query: 199 FKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKAL 258
K CK T LI M+ KCG L+DA +F +++ KD W+AMI YA HGK EK++
Sbjct: 257 KKHSFCKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKSM 316
Query: 259 RLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDL 318
+F++M+ E ++PD ITF+ LL AC+H G V+ G +YF MV+ +GI HY MVDL
Sbjct: 317 LMFERMRSENVQPDEITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKHYGSMVDL 376
Query: 319 LGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGC 378
L RAG L +A + I K+P P P ++ LL+AC H LDLAE + +F L+ ++ G
Sbjct: 377 LSRAGNLEDAYEFIDKLPISPTPMLWRILLAACSSHNNLDLAEKVSERIFELDDSH-GGD 435
Query: 379 YVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSI 438
YV L+N+YA KKW+ V +R MK+ VK+PG S IEV VVHEF SGD V +
Sbjct: 436 YVILSNLYARNKKWEYVDSLRKVMKDRKAVKVPGCSSIEVNNVVHEFFSGDGVKSATTKL 495
Query: 439 HEKLKELEKRMKLAGYVPDLEFALHA-VGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIR 497
H L E+ K +KL+GYVPD +HA + ++ KE L +HSEKLAI FGL+ P GT IR
Sbjct: 496 HRALDEMVKELKLSGYVPDTSMVVHANMNDQEKEITLRYHSEKLAITFGLLNTPPGTTIR 555
Query: 498 VFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
V KNLRVC DCH A K IS I R++++RD RFHHF+DG CSCGD+W
Sbjct: 556 VVKNLRVCRDCHNAAKLISLIFGRKVVLRDVQRFHHFEDGKCSCGDFW 603
>sp|Q9LW63|PP251_ARATH Putative pentatricopeptide repeat-containing protein At3g23330
OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1
Length = 715
Score = 410 bits (1055), Expect = e-113, Method: Compositional matrix adjust.
Identities = 212/545 (38%), Positives = 324/545 (59%), Gaps = 31/545 (5%)
Query: 1 MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
M K V++N+++AG+A Q G +DA + ++ D+ + LS +L + V
Sbjct: 202 MPRKDVVSYNTIIAGYA-QSGMYEDALRMVREMGTTDLKPDSFTLSSVLPIFSEYVDVIK 260
Query: 61 FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
I G+V +K + D+++ S+++ Y + +++ +
Sbjct: 261 -------------GKEIHGYVIRKGIDS--DVYIG---------SSLVDMYAKSARIEDS 296
Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLL 180
+F + ++W ++++GY V+N + L+L R M+ ++P A + SSV+
Sbjct: 297 ERVFSRLYCRDGISWNSLVAGY-----VQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIP 351
Query: 181 GCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVT 240
C+HL++L LGKQ+H V + + + L+ MY KCG+++ A K+F + D V+
Sbjct: 352 ACAHLATLHLGKQLHGYVLRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVS 411
Query: 241 WNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV 300
W A+I G+A HG G +A+ LF++MK +G+KP+ + FVA+L AC+H GLVD YF+SM
Sbjct: 412 WTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMT 471
Query: 301 NDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLA 360
YG+ + +HY + DLLGRAGKL EA + I KM +P +++ TLLS+C VHK L+LA
Sbjct: 472 KVYGLNQELEHYAAVADLLGRAGKLEEAYNFISKMCVEPTGSVWSTLLSSCSVHKNLELA 531
Query: 361 EFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGT 420
E A +F ++ N G YV + N+YA+ +W ++A++RL M++ + K P SWIE+
Sbjct: 532 EKVAEKIFTVDSEN-MGAYVLMCNMYASNGRWKEMAKLRLRMRKKGLRKKPACSWIEMKN 590
Query: 421 VVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEK 480
H F SGDR HP + I+E LK + ++M+ GYV D LH V EE K +LL HSE+
Sbjct: 591 KTHGFVSGDRSHPSMDKINEFLKAVMEQMEKEGYVADTSGVLHDVDEEHKRELLFGHSER 650
Query: 481 LAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCS 540
LA+AFG+I GT IRV KN+R+C DCH A K+IS I +REIIVRD +RFHHF G CS
Sbjct: 651 LAVAFGIINTEPGTTIRVTKNIRICTDCHVAIKFISKITEREIIVRDNSRFHHFNRGNCS 710
Query: 541 CGDYW 545
CGDYW
Sbjct: 711 CGDYW 715
Score = 69.7 bits (169), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 95/398 (23%), Positives = 159/398 (39%), Gaps = 84/398 (21%)
Query: 75 TMISGFVQKKNMAKARDL---FLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKS 131
T+I + K+ ++A+ L F+ + S S +IS Y L +A+ LFK
Sbjct: 10 TLIKNPTRIKSKSQAKQLHAQFIRTQSLSHTSASIVISIYTNLKLLHEALLLFKTLKSPP 69
Query: 132 VVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLG 191
V+AW ++I + + S L M G P+ + SVL C+ + L+ G
Sbjct: 70 VLAWKSVIRCF-----TDQSLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFG 124
Query: 192 KQVHQLVFKSPLCKDTTALTPLISMYCK-----------------------CGD------ 222
+ VH + + + D L++MY K GD
Sbjct: 125 ESVHGFIVRLGMDCDLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDVKAE 184
Query: 223 -------LEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSIT 275
++ ++F + RKDVV++N +I+GYAQ G E ALR+ +M +KPDS T
Sbjct: 185 TCIMPFGIDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFT 244
Query: 276 FVALLLACN-----------HAGLVDLGIQ---YF-DSMVNDYGIAAKPD---------- 310
++L + H ++ GI Y S+V+ Y +A+ +
Sbjct: 245 LSSVLPIFSEYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLY 304
Query: 311 -----HYTCMVDLLGRAGKLVEAVDLIKKM---PFKPQPAIFGTLLSAC----RVHKRLD 358
+ +V + G+ EA+ L ++M KP F +++ AC +H
Sbjct: 305 CRDGISWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQ 364
Query: 359 LAEFAAMNLFNLNPANAAGC---YVQLANIYAAMKKWD 393
L + F N A+ Y + NI AA K +D
Sbjct: 365 LHGYVLRGGFGSNIFIASALVDMYSKCGNIKAARKIFD 402
>sp|Q9ZUW3|PP172_ARATH Pentatricopeptide repeat-containing protein At2g27610
OS=Arabidopsis thaliana GN=PCMP-H60 PE=2 SV=1
Length = 868
Score = 410 bits (1054), Expect = e-113, Method: Compositional matrix adjust.
Identities = 214/516 (41%), Positives = 307/516 (59%), Gaps = 43/516 (8%)
Query: 67 IKDTASWNTMISGFVQKKNMAKARDLF-------------------LAMP---------- 97
+ + SW MISGF+Q +A DLF A+P
Sbjct: 359 VGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTALPVISPSEVHAQ 418
Query: 98 ------EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENS 151
E++S +A++ Y++ G++++A ++F K +VAW+AM++GY + G E +
Sbjct: 419 VVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGETEAA 478
Query: 152 WAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHL-SSLQLGKQVHQLVFKSPLCKDTTAL 210
+K+ + GI+PN + SS+L C+ +S+ GKQ H KS L
Sbjct: 479 -----IKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLDSSLCVS 533
Query: 211 TPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMK 270
+ L++MY K G++E A ++F + KD+V+WN+MISGYAQHG+ KAL +F +MK +K
Sbjct: 534 SALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVK 593
Query: 271 PDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVD 330
D +TF+ + AC HAGLV+ G +YFD MV D IA +H +CMVDL RAG+L +A+
Sbjct: 594 MDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMK 653
Query: 331 LIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMK 390
+I+ MP I+ T+L+ACRVHK+ +L AA + + P ++A YV L+N+YA
Sbjct: 654 VIENMPNPAGSTIWRTILAACRVHKKTELGRLAAEKIIAMKPEDSAA-YVLLSNMYAESG 712
Query: 391 KWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMK 450
W + A++R M E NV K PGYSWIEV + F +GDR HP I+ KL++L R+K
Sbjct: 713 DWQERAKVRKLMNERNVKKEPGYSWIEVKNKTYSFLAGDRSHPLKDQIYMKLEDLSTRLK 772
Query: 451 LAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHR 510
GY PD + L + +E KE +L HSE+LAIAFGLI P G+P+ + KNLRVCGDCH
Sbjct: 773 DLGYEPDTSYVLQDIDDEHKEAVLAQHSERLAIAFGLIATPKGSPLLIIKNLRVCGDCHL 832
Query: 511 ATKYISAIEKREIIVRDTTRFHHF-KDGTCSCGDYW 545
K I+ IE+REI+VRD+ RFHHF DG CSCGD+W
Sbjct: 833 VIKLIAKIEEREIVVRDSNRFHHFSSDGVCSCGDFW 868
Score = 94.7 bits (234), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 62/229 (27%), Positives = 112/229 (48%), Gaps = 6/229 (2%)
Query: 110 GYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIR 169
G + +L A LF +P + ++ +++ FG+ + ++ +L + LG+
Sbjct: 36 GTVSSSRLYNAHNLFDKSPGRDRESYISLL-----FGFSRDGRTQEAKRLFLNIHRLGME 90
Query: 170 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 229
+ S SSVL + L G+Q+H K D + T L+ Y K + +D K+
Sbjct: 91 MDCSIFSSVLKVSATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKV 150
Query: 230 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLV 289
F E++ ++VVTW +ISGYA++ ++ L LF +M++EG +P+S TF A L G+
Sbjct: 151 FDEMKERNVVTWTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVG 210
Query: 290 DLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 338
G+Q +V + G+ +++L + G + +A L K K
Sbjct: 211 GRGLQVHTVVVKN-GLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVK 258
Score = 94.4 bits (233), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 88/350 (25%), Positives = 153/350 (43%), Gaps = 84/350 (24%)
Query: 11 SVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAF---DFFQRLP- 66
S+L GF++ G+ ++A+ LF I + + + C + +S V+A + F R
Sbjct: 63 SLLFGFSRD-GRTQEAKRLFLNIHR-----LGMEMDCSIFSSVLKVSATLCDELFGRQLH 116
Query: 67 --------IKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLD 118
+ D + +++ +++ N R +F M E+N V+W+ +ISGY D
Sbjct: 117 CQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVTWTTLISGYARNSMND 176
Query: 119 KAVELF--------------------------------KVAPV-------KSVVAWTAMI 139
+ + LF +V V K++ ++I
Sbjct: 177 EVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNSLI 236
Query: 140 SGYMKFGYVENS---------------------WAEDGLKLLRMMIGLGIRPN-----AS 173
+ Y+K G V + +A +GL L + + +R N S
Sbjct: 237 NLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNYVRLSES 296
Query: 174 SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI 233
S +SV+ C++L L+ +Q+H V K D T L+ Y KC + DA +LF EI
Sbjct: 297 SFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCTAMLDALRLFKEI 356
Query: 234 Q-RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA 282
+VV+W AMISG+ Q+ E+A+ LF +MK +G++P+ T+ +L A
Sbjct: 357 GCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTA 406
Score = 94.4 bits (233), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 64/231 (27%), Positives = 116/231 (50%), Gaps = 6/231 (2%)
Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI 164
++++ Y++ ++F ++VV WT +ISGY + NS ++ L L M
Sbjct: 132 TSLVDTYMKGSNFKDGRKVFDEMKERNVVTWTTLISGYAR-----NSMNDEVLTLFMRMQ 186
Query: 165 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 224
G +PN+ + ++ L + G QVH +V K+ L K LI++Y KCG++
Sbjct: 187 NEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVR 246
Query: 225 DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 284
A LF + + K VVTWN+MISGYA +G +AL +F M+ ++ +F +++ C
Sbjct: 247 KARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNYVRLSESSFASVIKLCA 306
Query: 285 HAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335
+ + Q S+V YG + T ++ + +++A+ L K++
Sbjct: 307 NLKELRFTEQLHCSVVK-YGFLFDQNIRTALMVAYSKCTAMLDALRLFKEI 356
Score = 43.5 bits (101), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 60/293 (20%), Positives = 124/293 (42%), Gaps = 74/293 (25%)
Query: 10 NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
+S L ++G ++ A+E+F + + D+VS+
Sbjct: 533 SSALLTMYAKKGNIESAEEVFKRQREKDLVSW---------------------------- 564
Query: 70 TASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISGYIECGQLDKAVELF- 124
N+MISG+ Q KA D+F M ++ + V++ + + G +++ + F
Sbjct: 565 ----NSMISGYAQHGQAMKALDVFKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKYFD 620
Query: 125 ------KVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSL-SS 177
K+AP K + M+ Y + G +E + +K++ M P S++ +
Sbjct: 621 IMVRDCKIAPTKE--HNSCMVDLYSRAGQLEKA-----MKVIENMPN----PAGSTIWRT 669
Query: 178 VLLGCSHLSSLQLGK-QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK 236
+L C +LG+ +++ P +D+ A L +MY + GD ++ K+ + +
Sbjct: 670 ILAACRVHKKTELGRLAAEKIIAMKP--EDSAAYVLLSNMYAESGDWQERAKVRKLMNER 727
Query: 237 DV-----VTW-------NAMISGYAQHG-KGEKALRLFD---KMKDEGMKPDS 273
+V +W + ++G H K + ++L D ++KD G +PD+
Sbjct: 728 NVKKEPGYSWIEVKNKTYSFLAGDRSHPLKDQIYMKLEDLSTRLKDLGYEPDT 780
>sp|Q9SVP7|PP307_ARATH Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis
thaliana GN=PCMP-H42 PE=2 SV=2
Length = 1064
Score = 409 bits (1052), Expect = e-113, Method: Compositional matrix adjust.
Identities = 214/528 (40%), Positives = 301/528 (57%), Gaps = 45/528 (8%)
Query: 57 AAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK----------NSVS--- 103
A+D R KD SW TMI+G+ Q KA F M ++ N+VS
Sbjct: 543 TAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACA 602
Query: 104 --------------------------WSAMISGYIECGQLDKAVELFKVAPVKSVVAWTA 137
+A+++ Y CG+++++ F+ +AW A
Sbjct: 603 GLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNA 662
Query: 138 MISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQL 197
++SG+ + G E+ L++ M GI N + S + S ++++ GKQVH +
Sbjct: 663 LVSGFQQSGN-----NEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAV 717
Query: 198 VFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKA 257
+ K+ +T LISMY KCG + DA K FLE+ K+ V+WNA+I+ Y++HG G +A
Sbjct: 718 ITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEA 777
Query: 258 LRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVD 317
L FD+M ++P+ +T V +L AC+H GLVD GI YF+SM ++YG++ KP+HY C+VD
Sbjct: 778 LDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVD 837
Query: 318 LLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAG 377
+L RAG L A + I++MP KP ++ TLLSAC VHK +++ EFAA +L L P ++A
Sbjct: 838 MLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSA- 896
Query: 378 CYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVS 437
YV L+N+YA KKWD R MKE V K PG SWIEV +H F GD+ HP
Sbjct: 897 TYVLLSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSFYVGDQNHPLADE 956
Query: 438 IHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIR 497
IHE ++L KR GYV D L+ + E K+ ++ HSEKLAI+FGL+ +P PI
Sbjct: 957 IHEYFQDLTKRASEIGYVQDCFSLLNELQHEQKDPIIFIHSEKLAISFGLLSLPATVPIN 1016
Query: 498 VFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
V KNLRVC DCH K++S + REIIVRD RFHHF+ G CSC DYW
Sbjct: 1017 VMKNLRVCNDCHAWIKFVSKVSNREIIVRDAYRFHHFEGGACSCKDYW 1064
Score = 135 bits (340), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 100/368 (27%), Positives = 161/368 (43%), Gaps = 51/368 (13%)
Query: 6 TVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIM---LSCILLNSDDVVAAFDFF 62
T+ W +L G K G L + ++L +I + + S + L L D+ AF F
Sbjct: 86 TLKW--LLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGAFKVF 143
Query: 63 QRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIEC-------- 114
+P + +WN MI + + + LF+ M +N SG +E
Sbjct: 144 DEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSVAF 203
Query: 115 --------------------------------GQLDKAVELFKVAPVKSVVAWTAMISGY 142
G +D A +F +K +W AMISG
Sbjct: 204 DVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGL 263
Query: 143 MKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSP 202
K N + ++L M LGI P + SSVL C + SL++G+Q+H LV K
Sbjct: 264 SK-----NECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLG 318
Query: 203 LCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFD 262
DT L+S+Y G+L A +F + ++D VT+N +I+G +Q G GEKA+ LF
Sbjct: 319 FSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFK 378
Query: 263 KMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRA 322
+M +G++PDS T +L++AC+ G + G Q + G A+ +++L +
Sbjct: 379 RMHLDGLEPDSNTLASLVVACSADGTLFRG-QQLHAYTTKLGFASNNKIEGALLNLYAKC 437
Query: 323 GKLVEAVD 330
+ A+D
Sbjct: 438 ADIETALD 445
Score = 119 bits (298), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 85/318 (26%), Positives = 147/318 (46%), Gaps = 19/318 (5%)
Query: 21 GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIK----DTASWNTM 76
G L A+ +F + Q D V+YN +++ L A + F+R+ + D+ + ++
Sbjct: 337 GNLISAEHIFSNMSQRDAVTYNTLING-LSQCGYGEKAMELFKRMHLDGLEPDSNTLASL 395
Query: 77 ISGFVQKKNMAKARDLF-----LAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKS 131
+ + + + L L N + A+++ Y +C ++ A++ F V++
Sbjct: 396 VVACSADGTLFRGQQLHAYTTKLGFASNNKIE-GALLNLYAKCADIETALDYFLETEVEN 454
Query: 132 VVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLG 191
VV W M+ Y + NS+ ++ R M I PN + S+L C L L+LG
Sbjct: 455 VVLWNVMLVAYGLLDDLRNSF-----RIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELG 509
Query: 192 KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQH 251
+Q+H + K+ + + LI MY K G L+ A + + KDVV+W MI+GY Q+
Sbjct: 510 EQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQY 569
Query: 252 GKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGI-QYFDSMVNDYGIAAKPD 310
+KAL F +M D G++ D + + AC AGL L Q + G ++
Sbjct: 570 NFDDKALTTFRQMLDRGIRSDEVGLTNAVSAC--AGLQALKEGQQIHAQACVSGFSSDLP 627
Query: 311 HYTCMVDLLGRAGKLVEA 328
+V L R GK+ E+
Sbjct: 628 FQNALVTLYSRCGKIEES 645
Score = 73.6 bits (179), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 96/368 (26%), Positives = 141/368 (38%), Gaps = 75/368 (20%)
Query: 167 GIRPNASSLSSVLLGCSHLS-SLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLED 225
GIRPN +L +L GC + SL G+++H + K L + L Y GDL
Sbjct: 79 GIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYG 138
Query: 226 ACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN- 284
A K+F E+ + + TWN MI A + LF +M E + P+ TF +L AC
Sbjct: 139 AFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRG 198
Query: 285 -----------HA------------------------GLVDLGIQYFDSMVNDYGIAAKP 309
HA G VDL + FD G+ K
Sbjct: 199 GSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFD------GLRLK- 251
Query: 310 DH--YTCMVDLLGRAGKLVEAVDLIKKM---PFKPQPAIFGTLLSACRVHKRLDLAEFAA 364
DH + M+ L + EA+ L M P P F ++LSAC+ + L++ E
Sbjct: 252 DHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGE--Q 309
Query: 365 MNLFNLNPANAAGCYV--QLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVV 422
++ L ++ YV L ++Y + I +M + + V T++
Sbjct: 310 LHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTY--------NTLI 361
Query: 423 HEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPD------LEFALHAVGEEVKEQLLLF 476
+ EK EL KRM L G PD L A A G + Q L
Sbjct: 362 NGLSQ--------CGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHA 413
Query: 477 HSEKLAIA 484
++ KL A
Sbjct: 414 YTTKLGFA 421
>sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2
SV=1
Length = 738
Score = 407 bits (1047), Expect = e-113, Method: Compositional matrix adjust.
Identities = 215/551 (39%), Positives = 321/551 (58%), Gaps = 16/551 (2%)
Query: 4 KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCIL--------LNSDDV 55
K V+WNS++ GF Q+G A ELF K+ DV + ++ + +L L
Sbjct: 195 KDVVSWNSMINGFV-QKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQ 253
Query: 56 VAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECG 115
V ++ R+ + T + N M+ + + ++ A+ LF AM EK++V+W+ M+ GY
Sbjct: 254 VCSYIEENRVNVNLTLA-NAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISE 312
Query: 116 QLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSL 175
+ A E+ P K +VAW A+IS Y + G E + + + ++ N +L
Sbjct: 313 DYEAAREVLNSMPQKDIVAWNALISAYEQNGKPN----EALIVFHELQLQKNMKLNQITL 368
Query: 176 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR 235
S L C+ + +L+LG+ +H + K + + + LI MY KCGDLE + ++F +++
Sbjct: 369 VSTLSACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEK 428
Query: 236 KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQY 295
+DV W+AMI G A HG G +A+ +F KM++ +KP+ +TF + AC+H GLVD
Sbjct: 429 RDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESL 488
Query: 296 FDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHK 355
F M ++YGI + HY C+VD+LGR+G L +AV I+ MP P +++G LL AC++H
Sbjct: 489 FHQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHA 548
Query: 356 RLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSW 415
L+LAE A L L P N G +V L+NIYA + KW++V+ +R M+ + K PG S
Sbjct: 549 NLNLAEMACTRLLELEPRN-DGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGCSS 607
Query: 416 IEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAV-GEEVKEQLL 474
IE+ ++HEF SGD HP ++ KL E+ +++K GY P++ L + EE+KEQ L
Sbjct: 608 IEIDGMIHEFLSGDNAHPMSEKVYGKLHEVMEKLKSNGYEPEISQVLQIIEEEEMKEQSL 667
Query: 475 LFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHF 534
HSEKLAI +GLI IRV KNLRVCGDCH K IS + REIIVRD RFHHF
Sbjct: 668 NLHSEKLAICYGLISTEAPKVIRVIKNLRVCGDCHSVAKLISQLYDREIIVRDRYRFHHF 727
Query: 535 KDGTCSCGDYW 545
++G CSC D+W
Sbjct: 728 RNGQCSCNDFW 738
Score = 126 bits (317), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 105/428 (24%), Positives = 191/428 (44%), Gaps = 90/428 (21%)
Query: 11 SVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFF------QR 64
+ L+ FA L+ A+++FD+IP+P+ ++N ++ D V++ + F Q
Sbjct: 72 AALSSFAS----LEYARKVFDEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQC 127
Query: 65 LPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVS-----WSAMISGYIECGQLDK 119
P K T + +I + +++ + L M K++V +++I Y CG LD
Sbjct: 128 YPNKYTFPF--LIKAAAEVSSLSLGQSLH-GMAVKSAVGSDVFVANSLIHCYFSCGDLDS 184
Query: 120 AVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVL 179
A ++F K VV+W +MI+G+++ G + L+L + M ++ + ++ VL
Sbjct: 185 ACKVFTTIKEKDVVSWNSMINGFVQKGS-----PDKALELFKKMESEDVKASHVTMVGVL 239
Query: 180 LGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ----- 234
C+ + +L+ G+QV + ++ + + T ++ MY KCG +EDA +LF ++
Sbjct: 240 SACAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNV 299
Query: 235 --------------------------RKDVVTWNAMISGYAQHGKGEKALRLFDKMK-DE 267
+KD+V WNA+IS Y Q+GK +AL +F +++ +
Sbjct: 300 TWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQK 359
Query: 268 GMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLV- 326
MK + IT V+ L AC G ++LG ++ S + +GI + ++ + + G L
Sbjct: 360 NMKLNQITLVSTLSACAQVGALELG-RWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEK 418
Query: 327 ------------------------------EAVDLIKKMP---FKPQPAIFGTLLSACRV 353
EAVD+ KM KP F + AC
Sbjct: 419 SREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSH 478
Query: 354 HKRLDLAE 361
+D AE
Sbjct: 479 TGLVDEAE 486
Score = 114 bits (285), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 99/383 (25%), Positives = 161/383 (42%), Gaps = 40/383 (10%)
Query: 115 GQLDKAVELFKVAPVKSVVAWTAMISGYMKF-GYVENSWAEDGLKLLRMMIGLGIRPNAS 173
L+ A ++F P + AW +I Y V + WA L M+ PN
Sbjct: 78 ASLEYARKVFDEIPKPNSFAWNTLIRAYASGPDPVLSIWA-----FLDMVSESQCYPNKY 132
Query: 174 SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI 233
+ ++ + +SSL LG+ +H + KS + D LI Y CGDL+ ACK+F I
Sbjct: 133 TFPFLIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTI 192
Query: 234 QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGI 293
+ KDVV+WN+MI+G+ Q G +KAL LF KM+ E +K +T V +L AC ++ G
Sbjct: 193 KEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGR 252
Query: 294 QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRV 353
Q S + + + M+D+ + G + +A L M K + T+L +
Sbjct: 253 QVC-SYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDN-VTWTTMLDGYAI 310
Query: 354 HKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDV------ARIRLSMKENNV 407
+ + AA + N P + L + Y K ++ +++ +MK N +
Sbjct: 311 SEDYE----AAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQI 366
Query: 408 VKMPGYS------------WIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYV 455
+ S WI H R V L+ ++ K +LEK ++ V
Sbjct: 367 TLVSTLSACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSV 426
Query: 456 PDLE----------FALHAVGEE 468
+ A+H G E
Sbjct: 427 EKRDVFVWSAMIGGLAMHGCGNE 449
>sp|Q9SI53|PP147_ARATH Pentatricopeptide repeat-containing protein At2g03880,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H44 PE=2
SV=1
Length = 630
Score = 403 bits (1035), Expect = e-111, Method: Compositional matrix adjust.
Identities = 215/535 (40%), Positives = 313/535 (58%), Gaps = 28/535 (5%)
Query: 23 LKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQR------LPIKDTASWNTM 76
L DA +LFD++PQ +V+S+ M+S + Q+ L ++D N
Sbjct: 112 LNDAHQLFDQMPQRNVISWTTMIS--------AYSKCKIHQKALELLVLMLRDNVRPNVY 163
Query: 77 ISGFVQK--KNMAKARDLFLAMP----EKNSVSWSAMISGYIECGQLDKAVELFKVAPVK 130
V + M+ R L + E + SA+I + + G+ + A+ +F
Sbjct: 164 TYSSVLRSCNGMSDVRMLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTG 223
Query: 131 SVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQL 190
+ W ++I G+ +NS ++ L+L + M G ++L+SVL C+ L+ L+L
Sbjct: 224 DAIVWNSIIGGF-----AQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLEL 278
Query: 191 GKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQ 250
G Q H + K +D L+ MYCKCG LEDA ++F +++ +DV+TW+ MISG AQ
Sbjct: 279 GMQAHVHIVKYD--QDLILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQ 336
Query: 251 HGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPD 310
+G ++AL+LF++MK G KP+ IT V +L AC+HAGL++ G YF SM YGI +
Sbjct: 337 NGYSQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVRE 396
Query: 311 HYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNL 370
HY CM+DLLG+AGKL +AV L+ +M +P + TLL ACRV + + LAE+AA + L
Sbjct: 397 HYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIAL 456
Query: 371 NPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDR 430
+P +A G Y L+NIYA +KWD V IR M++ + K PG SWIEV +H F GD
Sbjct: 457 DPEDA-GTYTLLSNIYANSQKWDSVEEIRTRMRDRGIKKEPGCSWIEVNKQIHAFIIGDN 515
Query: 431 VHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKV 490
HP++V + +KL +L R+ GYVP+ F L + E E L HSEKLA+AFGL+ +
Sbjct: 516 SHPQIVEVSKKLNQLIHRLTGIGYVPETNFVLQDLEGEQMEDSLRHHSEKLALAFGLMTL 575
Query: 491 PLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
P+ IR+ KNLR+CGDCH K S +E R I++RD R+HHF+DG CSCGDYW
Sbjct: 576 PIEKVIRIRKNLRICGDCHVFCKLASKLEIRSIVIRDPIRYHHFQDGKCSCGDYW 630
Score = 116 bits (290), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 76/272 (27%), Positives = 139/272 (51%), Gaps = 17/272 (6%)
Query: 69 DTASWNTMISGFVQKKNMAKA----RDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELF 124
D+A+++ +I + + + + R L+ + +I+ Y++ L+ A +LF
Sbjct: 60 DSATYSELIKCCISNRAVHEGNLICRHLYFNGHRPMMFLVNVLINMYVKFNLLNDAHQLF 119
Query: 125 KVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSH 184
P ++V++WT MIS Y K + L+LL +M+ +RPN + SSVL C+
Sbjct: 120 DQMPQRNVISWTTMISAYSKCKI-----HQKALELLVLMLRDNVRPNVYTYSSVLRSCNG 174
Query: 185 LSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAM 244
+S +++ +H + K L D + LI ++ K G+ EDA +F E+ D + WN++
Sbjct: 175 MSDVRM---LHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSI 231
Query: 245 ISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN-DY 303
I G+AQ+ + + AL LF +MK G + T ++L AC L++LG+Q +V D
Sbjct: 232 IGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVKYDQ 291
Query: 304 GIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335
+ +VD+ + G L +A+ + +M
Sbjct: 292 DLILN----NALVDMYCKCGSLEDALRVFNQM 319
Score = 79.3 bits (194), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 62/243 (25%), Positives = 116/243 (47%), Gaps = 21/243 (8%)
Query: 16 FAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP----IKDTA 71
FAK G+ +DA +FD++ D + +N ++ NS V A + F+R+ I + A
Sbjct: 204 FAKL-GEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDV-ALELFKRMKRAGFIAEQA 261
Query: 72 SWNTMISGFVQKK--NMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPV 129
+ +++ + + + +++ + +A++ Y +CG L+ A+ +F
Sbjct: 262 TLTSVLRACTGLALLELGMQAHVHIVKYDQDLILNNALVDMYCKCGSLEDALRVFNQMKE 321
Query: 130 KSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQ 189
+ V+ W+ MISG + GY +++ LKL M G +PN ++ VL CSH L+
Sbjct: 322 RDVITWSTMISGLAQNGY-----SQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLLE 376
Query: 190 LG----KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ-RKDVVTWNAM 244
G + + +L P+ + + L+ K G L+DA KL E++ D VTW +
Sbjct: 377 DGWYYFRSMKKLYGIDPVREHYGCMIDLLG---KAGKLDDAVKLLNEMECEPDAVTWRTL 433
Query: 245 ISG 247
+
Sbjct: 434 LGA 436
>sp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290
OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1
Length = 809
Score = 402 bits (1034), Expect = e-111, Method: Compositional matrix adjust.
Identities = 219/549 (39%), Positives = 318/549 (57%), Gaps = 16/549 (2%)
Query: 5 TTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQR 64
+ VN ++ L + G L+ A++LFD + + +VVS+N M+ + N + A FQ+
Sbjct: 269 SLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAML-IFQK 327
Query: 65 LPIKDTASWNTMISGFVQK----KNMAKARDLFLAMPE----KNSVSWSAMISGYIECGQ 116
+ + + + G + ++ + R + E +N +++IS Y +C +
Sbjct: 328 MLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKE 387
Query: 117 LDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLS 176
+D A +F +++V+W AMI G+ +N D L M ++P+ +
Sbjct: 388 VDTAASMFGKLQSRTLVSWNAMI-----LGFAQNGRPIDALNYFSQMRSRTVKPDTFTYV 442
Query: 177 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK 236
SV+ + LS K +H +V +S L K+ T L+ MY KCG + A +F + +
Sbjct: 443 SVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSER 502
Query: 237 DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYF 296
V TWNAMI GY HG G+ AL LF++M+ +KP+ +TF++++ AC+H+GLV+ G++ F
Sbjct: 503 HVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACSHSGLVEAGLKCF 562
Query: 297 DSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKR 356
M +Y I DHY MVDLLGRAG+L EA D I +MP KP ++G +L AC++HK
Sbjct: 563 YMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQIHKN 622
Query: 357 LDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWI 416
++ AE AA LF LNP + G +V LANIY A W+ V ++R+SM + K PG S +
Sbjct: 623 VNFAEKAAERLFELNP-DDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPGCSMV 681
Query: 417 EVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLF 476
E+ VH F SG HP+ I+ L++L +K AGYVPD L V +VKEQLL
Sbjct: 682 EIKNEVHSFFSGSTAHPDSKKIYAFLEKLICHIKEAGYVPDTNLVL-GVENDVKEQLLST 740
Query: 477 HSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKD 536
HSEKLAI+FGL+ GT I V KNLRVC DCH ATKYIS + REI+VRD RFHHFK+
Sbjct: 741 HSEKLAISFGLLNTTAGTTIHVRKNLRVCADCHNATKYISLVTGREIVVRDMQRFHHFKN 800
Query: 537 GTCSCGDYW 545
G CSCGDYW
Sbjct: 801 GACSCGDYW 809
Score = 134 bits (338), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 100/384 (26%), Positives = 182/384 (47%), Gaps = 63/384 (16%)
Query: 1 MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
M + V+WN+++AG++ Q G + A E+ + + N+ S I + S V+ A
Sbjct: 196 MPERDLVSWNTIVAGYS-QNGMARMALEMVKSMCEE-----NLKPSFITIVS--VLPAVS 247
Query: 61 FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
+ + + M SGF N++ +A++ Y +CG L+ A
Sbjct: 248 ALRLISVGKEIHGYAMRSGFDSLVNIS-----------------TALVDMYAKCGSLETA 290
Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLL 180
+LF ++VV+W +MI YV+N ++ + + + M+ G++P S+ L
Sbjct: 291 RQLFDGMLERNVVSWNSMID-----AYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALH 345
Query: 181 GCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVT 240
C+ L L+ G+ +H+L + L ++ + + LISMYCKC +++ A +F ++Q + +V+
Sbjct: 346 ACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVS 405
Query: 241 WNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA------CNHA-------- 286
WNAMI G+AQ+G+ AL F +M+ +KPD+ T+V+++ A +HA
Sbjct: 406 WNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVM 465
Query: 287 ------------GLVDL----GIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVD 330
LVD+ G ++ D + M+D G G A++
Sbjct: 466 RSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALE 525
Query: 331 LIKKM---PFKPQPAIFGTLLSAC 351
L ++M KP F +++SAC
Sbjct: 526 LFEEMQKGTIKPNGVTFLSVISAC 549
Score = 114 bits (284), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 76/280 (27%), Positives = 140/280 (50%), Gaps = 14/280 (5%)
Query: 21 GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTA----SWNTM 76
G + +A +F+ I V Y+ ML D+ A FF R+ D ++ +
Sbjct: 83 GSVDEAARVFEPIDSKLNVLYHTMLKG-FAKVSDLDKALQFFVRMRYDDVEPVVYNFTYL 141
Query: 77 ISGFVQKKNMAKARDLF-LAMPEKNSVSWSAMI---SGYIECGQLDKAVELFKVAPVKSV 132
+ + + +++ L + S+ AM + Y +C Q+++A ++F P + +
Sbjct: 142 LKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDL 201
Query: 133 VAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGK 192
V+W +++GY +N A L++++ M ++P+ ++ SVL S L + +GK
Sbjct: 202 VSWNTIVAGY-----SQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGK 256
Query: 193 QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHG 252
++H +S T L+ MY KCG LE A +LF + ++VV+WN+MI Y Q+
Sbjct: 257 EIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNE 316
Query: 253 KGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 292
++A+ +F KM DEG+KP ++ + L AC G ++ G
Sbjct: 317 NPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERG 356
Score = 68.6 bits (166), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 69/277 (24%), Positives = 117/277 (42%), Gaps = 48/277 (17%)
Query: 4 KTTVNWNSVLAGFAKQRGKLKDAQELFDKIP----QPDVVSYNIMLSCILLNSDDVVAAF 59
+T V+WN+++ GFA Q G+ DA F ++ +PD +Y +++ I
Sbjct: 401 RTLVSWNAMILGFA-QNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAI----------- 448
Query: 60 DFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDK 119
L I A W I G V + + +KN +A++ Y +CG +
Sbjct: 449 ---AELSITHHAKW---IHGVVMRSCL-----------DKNVFVTTALVDMYAKCGAIMI 491
Query: 120 AVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVL 179
A +F + + V W AMI GY G+ + L+L M I+PN + SV+
Sbjct: 492 ARLIFDMMSERHVTTWNAMIDGYGTHGF-----GKAALELFEEMQKGTIKPNGVTFLSVI 546
Query: 180 LGCSHLSSLQLGKQVHQLV---FKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK 236
CSH ++ G + ++ + L D ++ + + G L +A +++ K
Sbjct: 547 SACSHSGLVEAGLKCFYMMKENYSIELSMDHYG--AMVDLLGRAGRLNEAWDFIMQMPVK 604
Query: 237 DVVT-WNAMISGYAQHGK---GEKAL-RLFDKMKDEG 268
V + AM+ H EKA RLF+ D+G
Sbjct: 605 PAVNVYGAMLGACQIHKNVNFAEKAAERLFELNPDDG 641
Score = 63.9 bits (154), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 80/151 (52%), Gaps = 1/151 (0%)
Query: 186 SSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMI 245
SSL+ +Q+ LVFK+ L ++ T L+S++C+ G +++A ++F I K V ++ M+
Sbjct: 48 SSLKELRQILPLVFKNGLYQEHFFQTKLVSLFCRYGSVDEAARVFEPIDSKLNVLYHTML 107
Query: 246 SGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGI 305
G+A+ +KAL+ F +M+ + ++P F LL C + +G + +V G
Sbjct: 108 KGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKS-GF 166
Query: 306 AAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 336
+ T + ++ + ++ EA + +MP
Sbjct: 167 SLDLFAMTGLENMYAKCRQVNEARKVFDRMP 197
>sp|Q9FHF9|PP419_ARATH Pentatricopeptide repeat-containing protein At5g46460,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H49 PE=2
SV=1
Length = 697
Score = 401 bits (1031), Expect = e-111, Method: Compositional matrix adjust.
Identities = 226/586 (38%), Positives = 330/586 (56%), Gaps = 52/586 (8%)
Query: 1 MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
M ++ V+W +++ G + GK+ A+ LF ++P D ++N M+ L V A
Sbjct: 123 MPERSVVSWTAMVNGCFRS-GKVDQAERLFYQMPVKDTAAWNSMVHG-YLQFGKVDDALK 180
Query: 61 FFQRLPIKDTASWNTMISGFVQKKNMAKARDLF--------------------------- 93
F+++P K+ SW TMI G Q + +A DLF
Sbjct: 181 LFKQMPGKNVISWTTMICGLDQNERSGEALDLFKNMLRCCIKSTSRPFTCVITACANAPA 240
Query: 94 -------------LAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMIS 140
L + VS +++I+ Y C ++ + ++F + V WTA++S
Sbjct: 241 FHMGIQVHGLIIKLGFLYEEYVS-ASLITFYANCKRIGDSRKVFDEKVHEQVAVWTALLS 299
Query: 141 GYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK 200
GY N ED L + M+ I PN S+ +S L CS L +L GK++H + K
Sbjct: 300 GYSL-----NKKHEDALSIFSGMLRNSILPNQSTFASGLNSCSALGTLDWGKEMHGVAVK 354
Query: 201 SPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRL 260
L D L+ MY G++ DA +F++I +K +V+WN++I G AQHG+G+ A +
Sbjct: 355 LGLETDAFVGNSLVVMYSDSGNVNDAVSVFIKIFKKSIVSWNSIIVGCAQHGRGKWAFVI 414
Query: 261 FDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYG-IAAKPDHYTCMVDLL 319
F +M +PD ITF LL AC+H G ++ G + F M + I K HYTCMVD+L
Sbjct: 415 FGQMIRLNKEPDEITFTGLLSACSHCGFLEKGRKLFYYMSSGINHIDRKIQHYTCMVDIL 474
Query: 320 GRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCY 379
GR GKL EA +LI++M KP ++ LLSACR+H +D E AA +FNL+ ++A Y
Sbjct: 475 GRCGKLKEAEELIERMVVKPNEMVWLALLSACRMHSDVDRGEKAAAAIFNLDSKSSAA-Y 533
Query: 380 VQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIH 439
V L+NIYA+ +W +V+++R+ MK+N ++K PG SW+ + HEF SGD+ P I+
Sbjct: 534 VLLSNIYASAGRWSNVSKLRVKMKKNGIMKKPGSSWVVIRGKKHEFFSGDQ--PHCSRIY 591
Query: 440 EKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVF 499
EKL+ L +++K GY PD ALH V +E KE++L +HSE+LAIAFGLI G+ + V
Sbjct: 592 EKLEFLREKLKELGYAPDYRSALHDVEDEQKEEMLWYHSERLAIAFGLINTVEGSAVTVM 651
Query: 500 KNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
KNLRVC DCH K IS + REI++RD RFHHFK+GTCSCGDYW
Sbjct: 652 KNLRVCEDCHTVIKLISGVVGREIVLRDPIRFHHFKNGTCSCGDYW 697
Score = 179 bits (453), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 110/379 (29%), Positives = 185/379 (48%), Gaps = 31/379 (8%)
Query: 22 KLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFV 81
++ +A+E+F+++P P V Y M++ S+ +V A + F +P++D SWN+MISG V
Sbjct: 50 RIDEAREVFNQVPSPHVSLYTKMITG-YTRSNRLVDALNLFDEMPVRDVVSWNSMISGCV 108
Query: 82 QKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISG 141
+ +M A LF MPE++ VSW+AM++G G++D+A LF PVK AW +M+ G
Sbjct: 109 ECGDMNTAVKLFDEMPERSVVSWTAMVNGCFRSGKVDQAERLFYQMPVKDTAAWNSMVHG 168
Query: 142 YMKFGYVEN--------------SWAE------------DGLKLLRMMIGLGIRPNASSL 175
Y++FG V++ SW + L L + M+ I+ +
Sbjct: 169 YLQFGKVDDALKLFKQMPGKNVISWTTMICGLDQNERSGEALDLFKNMLRCCIKSTSRPF 228
Query: 176 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR 235
+ V+ C++ + +G QVH L+ K + LI+ Y C + D+ K+F E
Sbjct: 229 TCVITACANAPAFHMGIQVHGLIIKLGFLYEEYVSASLITFYANCKRIGDSRKVFDEKVH 288
Query: 236 KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQY 295
+ V W A++SGY+ + K E AL +F M + P+ TF + L +C+ G +D G +
Sbjct: 289 EQVAVWTALLSGYSLNKKHEDALSIFSGMLRNSILPNQSTFASGLNSCSALGTLDWGKEM 348
Query: 296 FDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHK 355
V G+ +V + +G + +AV + K+ FK + +++ C H
Sbjct: 349 HGVAVK-LGLETDAFVGNSLVVMYSDSGNVNDAVSVFIKI-FKKSIVSWNSIIVGCAQHG 406
Query: 356 RLDLAE--FAAMNLFNLNP 372
R A F M N P
Sbjct: 407 RGKWAFVIFGQMIRLNKEP 425
>sp|Q9FRI5|PPR57_ARATH Pentatricopeptide repeat-containing protein At1g25360
OS=Arabidopsis thaliana GN=PCMP-H74 PE=2 SV=1
Length = 790
Score = 401 bits (1031), Expect = e-111, Method: Compositional matrix adjust.
Identities = 215/559 (38%), Positives = 325/559 (58%), Gaps = 40/559 (7%)
Query: 7 VNWNSVLAGFAKQRGKLKDAQEL----------FDKIPQPDVV---------SYNIMLSC 47
V +N++++G+ RG ++A E+ D+ P V+ +
Sbjct: 252 VAYNAMISGYV-NRGFYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQVHA 310
Query: 48 ILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAM 107
+L +D FD N+++S + + +AR +F MP K+ VSW+A+
Sbjct: 311 YVLRREDFSFHFD-------------NSLVSLYYKCGKFDEARAIFEKMPAKDLVSWNAL 357
Query: 108 ISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLG 167
+SGY+ G + +A +FK K++++W MISG EN + E+GLKL M G
Sbjct: 358 LSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGL-----AENGFGEEGLKLFSCMKREG 412
Query: 168 IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC 227
P + S + C+ L + G+Q H + K +A LI+MY KCG +E+A
Sbjct: 413 FEPCDYAFSGAIKSCAVLGAYCNGQQYHAQLLKIGFDSSLSAGNALITMYAKCGVVEEAR 472
Query: 228 KLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG 287
++F + D V+WNA+I+ QHG G +A+ ++++M +G++PD IT + +L AC+HAG
Sbjct: 473 QVFRTMPCLDSVSWNALIAALGQHGHGAEAVDVYEEMLKKGIRPDRITLLTVLTACSHAG 532
Query: 288 LVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTL 347
LVD G +YFDSM Y I DHY ++DLL R+GK +A +I+ +PFKP I+ L
Sbjct: 533 LVDQGRKYFDSMETVYRIPPGADHYARLIDLLCRSGKFSDAESVIESLPFKPTAEIWEAL 592
Query: 348 LSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNV 407
LS CRVH ++L AA LF L P + G Y+ L+N++AA +W++VAR+R M++ V
Sbjct: 593 LSGCRVHGNMELGIIAADKLFGLIPEH-DGTYMLLSNMHAATGQWEEVARVRKLMRDRGV 651
Query: 408 VKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGE 467
K SWIE+ T VH F D HPE +++ L++L K M+ GYVPD F LH V
Sbjct: 652 KKEVACSWIEMETQVHTFLVDDTSHPEAEAVYIYLQDLGKEMRRLGYVPDTSFVLHDVES 711
Query: 468 EV-KEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVR 526
+ KE +L HSEK+A+AFGL+K+P GT IR+FKNLR CGDCH +++S + +R+II+R
Sbjct: 712 DGHKEDMLTTHSEKIAVAFGLMKLPPGTTIRIFKNLRTCGDCHNFFRFLSWVVQRDIILR 771
Query: 527 DTTRFHHFKDGTCSCGDYW 545
D RFHHF++G CSCG++W
Sbjct: 772 DRKRFHHFRNGECSCGNFW 790
Score = 122 bits (307), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 105/421 (24%), Positives = 175/421 (41%), Gaps = 111/421 (26%)
Query: 22 KLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPI--KDTASWNTMISG 79
+L A++LFD+I +PD ++ M+S S D+ A F++ P+ +DT +N MI+G
Sbjct: 64 ELNYARQLFDEISEPDKIARTTMVSG-YCASGDITLARGVFEKAPVCMRDTVMYNAMITG 122
Query: 80 FVQKKNMAKARDLFLAMP------------------------EKNSVSW----------- 104
F + A +LF M EK V +
Sbjct: 123 FSHNNDGYSAINLFCKMKHEGFKPDNFTFASVLAGLALVADDEKQCVQFHAAALKSGAGY 182
Query: 105 -----SAMISGYIECGQ----LDKAVELFKVAPVKSVVAWTAMISGYMK----------- 144
+A++S Y +C L A ++F K +WT M++GY+K
Sbjct: 183 ITSVSNALVSVYSKCASSPSLLHSARKVFDEILEKDERSWTTMMTGYVKNGYFDLGEELL 242
Query: 145 ----------------FGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSL 188
GYV + ++ L+++R M+ GI + + SV+ C+ L
Sbjct: 243 EGMDDNMKLVAYNAMISGYVNRGFYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLL 302
Query: 189 QLGKQVHQLVFKSPLCKDTTAL--TPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMIS 246
QLGKQVH V + +D + L+S+Y KCG ++A +F ++ KD+V+WNA++S
Sbjct: 303 QLGKQVHAYVLRR---EDFSFHFDNSLVSLYYKCGKFDEARAIFEKMPAKDLVSWNALLS 359
Query: 247 GY-------------------------------AQHGKGEKALRLFDKMKDEGMKPDSIT 275
GY A++G GE+ L+LF MK EG +P
Sbjct: 360 GYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYA 419
Query: 276 FVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335
F + +C G G QY ++ G + ++ + + G + EA + + M
Sbjct: 420 FSGAIKSCAVLGAYCNGQQYHAQLLK-IGFDSSLSAGNALITMYAKCGVVEEARQVFRTM 478
Query: 336 P 336
P
Sbjct: 479 P 479
Score = 99.8 bits (247), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 83/304 (27%), Positives = 134/304 (44%), Gaps = 46/304 (15%)
Query: 74 NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPV--KS 131
N +I + + + AR LF + E + ++ + M+SGY G + A +F+ APV +
Sbjct: 53 NRLIDVYCKSSELNYARQLFDEISEPDKIARTTMVSGYCASGDITLARGVFEKAPVCMRD 112
Query: 132 VVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLG 191
V + AMI+ G+ N+ + L M G +P+ + +SVL G + ++ +
Sbjct: 113 TVMYNAMIT-----GFSHNNDGYSAINLFCKMKHEGFKPDNFTFASVLAGLALVADDEKQ 167
Query: 192 -KQVHQLVFKSPLCKDTTALTPLISMYCKCGD----LEDACKLFLEIQRKDVVTW----- 241
Q H KS T+ L+S+Y KC L A K+F EI KD +W
Sbjct: 168 CVQFHAAALKSGAGYITSVSNALVSVYSKCASSPSLLHSARKVFDEILEKDERSWTTMMT 227
Query: 242 ---------------------------NAMISGYAQHGKGEKALRLFDKMKDEGMKPDSI 274
NAMISGY G ++AL + +M G++ D
Sbjct: 228 GYVKNGYFDLGEELLEGMDDNMKLVAYNAMISGYVNRGFYQEALEMVRRMVSSGIELDEF 287
Query: 275 TFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKK 334
T+ +++ AC AGL+ LG Q ++ + D+ +V L + GK EA + +K
Sbjct: 288 TYPSVIRACATAGLLQLGKQVHAYVLRREDFSFHFDN--SLVSLYYKCGKFDEARAIFEK 345
Query: 335 MPFK 338
MP K
Sbjct: 346 MPAK 349
Score = 83.2 bits (204), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 70/275 (25%), Positives = 134/275 (48%), Gaps = 19/275 (6%)
Query: 1 MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLN--SDDVVAA 58
M K V+WN++L+G+ G + +A+ +F ++ + +++S+ IM+S + N ++ +
Sbjct: 346 MPAKDLVSWNALLSGYVSS-GHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKL 404
Query: 59 FDFFQRLPIK--DTASWNTMISGFVQKK--NMAKARDLFLAMPEKNSVS-WSAMISGYIE 113
F +R + D A + S V N + L + +S+S +A+I+ Y +
Sbjct: 405 FSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQYHAQLLKIGFDSSLSAGNALITMYAK 464
Query: 114 CGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNAS 173
CG +++A ++F+ P V+W A+I+ + G+ + + + M+ GIRP+
Sbjct: 465 CGVVEEARQVFRTMPCLDSVSWNALIAALGQHGH-----GAEAVDVYEEMLKKGIRPDRI 519
Query: 174 SLSSVLLGCSHLSSLQLGKQVH---QLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 230
+L +VL CSH + G++ + V++ P D A LI + C+ G DA +
Sbjct: 520 TLLTVLTACSHAGLVDQGRKYFDSMETVYRIPPGADHYA--RLIDLLCRSGKFSDAESVI 577
Query: 231 LEIQRKDVV-TWNAMISGYAQHGKGEKALRLFDKM 264
+ K W A++SG HG E + DK+
Sbjct: 578 ESLPFKPTAEIWEALLSGCRVHGNMELGIIAADKL 612
Score = 68.2 bits (165), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 65/120 (54%), Gaps = 6/120 (5%)
Query: 163 MIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGD 222
+I G +P A L+ ++ S L +Q+ + + D A T ++S YC GD
Sbjct: 40 IITFGFQPRAHILNRLIDVYCKSSELNYARQLFDEISEP----DKIARTTMVSGYCASGD 95
Query: 223 LEDACKLFLE--IQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 280
+ A +F + + +D V +NAMI+G++ + G A+ LF KMK EG KPD+ TF ++L
Sbjct: 96 ITLARGVFEKAPVCMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDNFTFASVL 155
>sp|Q9SZT8|PP354_ARATH Pentatricopeptide repeat-containing protein At4g37380,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H48 PE=3
SV=1
Length = 632
Score = 399 bits (1026), Expect = e-110, Method: Compositional matrix adjust.
Identities = 201/472 (42%), Positives = 295/472 (62%), Gaps = 8/472 (1%)
Query: 76 MISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAW 135
++ + + ++ A+ +F MPE++ VS +AMI+ Y + G ++ A LF + +V+W
Sbjct: 167 LVDVYAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDSMCERDIVSW 226
Query: 136 TAMISGYMKFGYVENSWAEDGLKLLRMMIGLG-IRPNASSLSSVLLGCSHLSSLQLGKQV 194
MI GY + G+ D L L + ++ G +P+ ++ + L CS + +L+ G+ +
Sbjct: 227 NVMIDGYAQHGF-----PNDALMLFQKLLAEGKPKPDEITVVAALSACSQIGALETGRWI 281
Query: 195 HQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKG 254
H V S + + T LI MY KCG LE+A +F + RKD+V WNAMI+GYA HG
Sbjct: 282 HVFVKSSRIRLNVKVCTGLIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMIAGYAMHGYS 341
Query: 255 EKALRLFDKMKD-EGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYT 313
+ ALRLF++M+ G++P ITF+ L AC HAGLV+ GI+ F+SM +YGI K +HY
Sbjct: 342 QDALRLFNEMQGITGLQPTDITFIGTLQACAHAGLVNEGIRIFESMGQEYGIKPKIEHYG 401
Query: 314 CMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPA 373
C+V LLGRAG+L A + IK M ++ ++L +C++H L + A L LN
Sbjct: 402 CLVSLLGRAGQLKRAYETIKNMNMDADSVLWSSVLGSCKLHGDFVLGKEIAEYLIGLNIK 461
Query: 374 NAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHP 433
N+ G YV L+NIYA++ ++ VA++R MKE +VK PG S IE+ VHEFR+GDR H
Sbjct: 462 NS-GIYVLLSNIYASVGDYEGVAKVRNLMKEKGIVKEPGISTIEIENKVHEFRAGDREHS 520
Query: 434 ELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLG 493
+ I+ L+++ +R+K GYVP+ L + E KEQ L HSE+LAIA+GLI G
Sbjct: 521 KSKEIYTMLRKISERIKSHGYVPNTNTVLQDLEETEKEQSLQVHSERLAIAYGLISTKPG 580
Query: 494 TPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
+P+++FKNLRVC DCH TK IS I R+I++RD RFHHF DG+CSCGD+W
Sbjct: 581 SPLKIFKNLRVCSDCHTVTKLISKITGRKIVMRDRNRFHHFTDGSCSCGDFW 632
Score = 90.1 bits (222), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 81/266 (30%), Positives = 114/266 (42%), Gaps = 52/266 (19%)
Query: 110 GYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLK-----LLRMMI 164
Y G++ ++ LF + +TA I N+ + +GLK L ++
Sbjct: 73 AYASHGKIRHSLALFHQTIDPDLFLFTAAI----------NTASINGLKDQAFLLYVQLL 122
Query: 165 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 224
I PN + SS+L CS S GK +H V K L D T L+ +Y K GD+
Sbjct: 123 SSEINPNEFTFSSLLKSCSTKS----GKLIHTHVLKFGLGIDPYVATGLVDVYAKGGDVV 178
Query: 225 DACKLF-----------------------LEIQR--------KDVVTWNAMISGYAQHGK 253
A K+F +E R +D+V+WN MI GYAQHG
Sbjct: 179 SAQKVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGF 238
Query: 254 GEKALRLFDKMKDEGM-KPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY 312
AL LF K+ EG KPD IT VA L AC+ G ++ G ++ V I
Sbjct: 239 PNDALMLFQKLLAEGKPKPDEITVVAALSACSQIGALETG-RWIHVFVKSSRIRLNVKVC 297
Query: 313 TCMVDLLGRAGKLVEAVDLIKKMPFK 338
T ++D+ + G L EAV + P K
Sbjct: 298 TGLIDMYSKCGSLEEAVLVFNDTPRK 323
Score = 85.1 bits (209), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 69/275 (25%), Positives = 119/275 (43%), Gaps = 49/275 (17%)
Query: 21 GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
G + AQ++FD++P+ +VS M++C +V AA F + +D SWN MI G+
Sbjct: 175 GDVVSAQKVFDRMPERSLVSSTAMITC-YAKQGNVEAARALFDSMCERDIVSWNVMIDGY 233
Query: 81 VQKKNMAKARDLFLAM-----PEKNSVS------------------W------------- 104
Q A LF + P+ + ++ W
Sbjct: 234 AQHGFPNDALMLFQKLLAEGKPKPDEITVVAALSACSQIGALETGRWIHVFVKSSRIRLN 293
Query: 105 ----SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLL 160
+ +I Y +CG L++AV +F P K +VAW AMI+GY GY ++D L+L
Sbjct: 294 VKVCTGLIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMIAGYAMHGY-----SQDALRLF 348
Query: 161 RMMIGL-GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTA-LTPLISMYC 218
M G+ G++P + L C+H + G ++ + + + K L+S+
Sbjct: 349 NEMQGITGLQPTDITFIGTLQACAHAGLVNEGIRIFESMGQEYGIKPKIEHYGCLVSLLG 408
Query: 219 KCGDLEDACKLFLEIQRK-DVVTWNAMISGYAQHG 252
+ G L+ A + + D V W++++ HG
Sbjct: 409 RAGQLKRAYETIKNMNMDADSVLWSSVLGSCKLHG 443
>sp|Q9LZ19|PP364_ARATH Pentatricopeptide repeat-containing protein At5g04780
OS=Arabidopsis thaliana GN=PCMP-H16 PE=2 SV=2
Length = 635
Score = 399 bits (1025), Expect = e-110, Method: Compositional matrix adjust.
Identities = 215/570 (37%), Positives = 327/570 (57%), Gaps = 50/570 (8%)
Query: 19 QRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDD----VVAAFDFFQRLPIKDTASWN 74
+ G + +A+ KI + D+ ++ L +L+N+ V A F + + SWN
Sbjct: 73 RNGAVMEAKACHGKIIRIDLEG-DVTLLNVLINAYSKCGFVELARQVFDGMLERSLVSWN 131
Query: 75 TMISGFVQKKNMAKARDLFLAMPEK----------------------------------- 99
TMI + + + ++A D+FL M +
Sbjct: 132 TMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSACGVNCDALECKKLHCLSVKT 191
Query: 100 ----NSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAED 155
N +A++ Y +CG + AV++F+ KS V W++M++GY V+N E+
Sbjct: 192 CIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQDKSSVTWSSMVAGY-----VQNKNYEE 246
Query: 156 GLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLIS 215
L L R + + N +LSSV+ CS+L++L GKQ+H ++ KS + + +
Sbjct: 247 ALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAVICKSGFGSNVFVASSAVD 306
Query: 216 MYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSIT 275
MY KCG L ++ +F E+Q K++ WN +ISG+A+H + ++ + LF+KM+ +GM P+ +T
Sbjct: 307 MYAKCGSLRESYIIFSEVQEKNLELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNEVT 366
Query: 276 FVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335
F +LL C H GLV+ G ++F M YG++ HY+CMVD+LGRAG L EA +LIK +
Sbjct: 367 FSSLLSVCGHTGLVEEGRRFFKLMRTTYGLSPNVVHYSCMVDILGRAGLLSEAYELIKSI 426
Query: 336 PFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDV 395
PF P +I+G+LL++CRV+K L+LAE AA LF L P N AG +V L+NIYAA K+W+++
Sbjct: 427 PFDPTASIWGSLLASCRVYKNLELAEVAAEKLFELEPEN-AGNHVLLSNIYAANKQWEEI 485
Query: 396 ARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYV 455
A+ R +++ +V K+ G SWI++ VH F G+ HP + I L L + + GY
Sbjct: 486 AKSRKLLRDCDVKKVRGKSWIDIKDKVHTFSVGESGHPRIREICSTLDNLVIKFRKFGYK 545
Query: 456 PDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYI 515
P +E LH V KE+LL+ HSEKLA+ FGL+ +P +P+R+ KNLR+C DCH K
Sbjct: 546 PSVEHELHDVEIGKKEELLMQHSEKLALVFGLMCLPESSPVRIMKNLRICVDCHEFMKAA 605
Query: 516 SAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
S +R IIVRD RFHHF DG CSCGD+W
Sbjct: 606 SMATRRFIIVRDVNRFHHFSDGHCSCGDFW 635
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 60/113 (53%)
Query: 171 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 230
N + + +L C+ ++ K H + + L D T L LI+ Y KCG +E A ++F
Sbjct: 60 NRNLVHEILQLCARNGAVMEAKACHGKIIRIDLEGDVTLLNVLINAYSKCGFVELARQVF 119
Query: 231 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC 283
+ + +V+WN MI Y ++ +AL +F +M++EG K T ++L AC
Sbjct: 120 DGMLERSLVSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSAC 172
Score = 50.1 bits (118), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/217 (21%), Positives = 95/217 (43%), Gaps = 36/217 (16%)
Query: 1 MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
M K++V W+S++AG+ Q ++A L+ + + + LS ++ ++ A +
Sbjct: 223 MQDKSSVTWSSMVAGYV-QNKNYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIE 281
Query: 61 FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
Q + SGF ++F+A S+ + Y +CG L ++
Sbjct: 282 GKQMHAV-------ICKSGF--------GSNVFVA---------SSAVDMYAKCGSLRES 317
Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLL 180
+F K++ W +ISG+ K ++ ++ + L M G+ PN + SS+L
Sbjct: 318 YIIFSEVQEKNLELWNTIISGFAK-----HARPKEVMILFEKMQQDGMHPNEVTFSSLLS 372
Query: 181 GCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMY 217
C H ++ G++ +L+ + T L+P + Y
Sbjct: 373 VCGHTGLVEEGRRFFKLM------RTTYGLSPNVVHY 403
>sp|Q9FIB2|PP373_ARATH Putative pentatricopeptide repeat-containing protein At5g09950
OS=Arabidopsis thaliana GN=PCMP-H35 PE=3 SV=1
Length = 995
Score = 399 bits (1024), Expect = e-110, Method: Compositional matrix adjust.
Identities = 220/569 (38%), Positives = 336/569 (59%), Gaps = 41/569 (7%)
Query: 1 MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSD---DVVA 57
+ + V+ ++ L + G L + +++F +P+ D VS+N ++ + + + V
Sbjct: 444 LGIDLNVSVSNALMTLYAETGYLNECRKIFSSMPEHDQVSWNSIIGALARSERSLPEAVV 503
Query: 58 AFDFFQRLPIK----------------DTASWNTMISGFVQKKNMAKARDLFLAMPEKNS 101
F QR K I G K N+A +
Sbjct: 504 CFLNAQRAGQKLNRITFSSVLSAVSSLSFGELGKQIHGLALKNNIAD-----------EA 552
Query: 102 VSWSAMISGYIECGQLDKAVELF-KVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLL 160
+ +A+I+ Y +CG++D ++F ++A + V W +MISGY + N L L+
Sbjct: 553 TTENALIACYGKCGEMDGCEKIFSRMAERRDNVTWNSMISGY-----IHNELLAKALDLV 607
Query: 161 RMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKC 220
M+ G R ++ ++VL + +++L+ G +VH ++ L D + L+ MY KC
Sbjct: 608 WFMLQTGQRLDSFMYATVLSAFASVATLERGMEVHACSVRACLESDVVVGSALVDMYSKC 667
Query: 221 GDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKP-DSITFVAL 279
G L+ A + F + ++ +WN+MISGYA+HG+GE+AL+LF+ MK +G P D +TFV +
Sbjct: 668 GRLDYALRFFNTMPVRNSYSWNSMISGYARHGQGEEALKLFETMKLDGQTPPDHVTFVGV 727
Query: 280 LLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKP 339
L AC+HAGL++ G ++F+SM + YG+A + +H++CM D+LGRAG+L + D I+KMP KP
Sbjct: 728 LSACSHAGLLEEGFKHFESMSDSYGLAPRIEHFSCMADVLGRAGELDKLEDFIEKMPMKP 787
Query: 340 QPAIFGTLLSAC-RVHKR-LDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVAR 397
I+ T+L AC R + R +L + AA LF L P NA YV L N+YAA +W+D+ +
Sbjct: 788 NVLIWRTVLGACCRANGRKAELGKKAAEMLFQLEPENAVN-YVLLGNMYAAGGRWEDLVK 846
Query: 398 IRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPD 457
R MK+ +V K GYSW+ + VH F +GD+ HP+ I++KLKEL ++M+ AGYVP
Sbjct: 847 ARKKMKDADVKKEAGYSWVTMKDGVHMFVAGDKSHPDADVIYKKLKELNRKMRDAGYVPQ 906
Query: 458 LEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGT-PIRVFKNLRVCGDCHRATKYIS 516
FAL+ + +E KE++L +HSEKLA+AF L T PIR+ KNLRVCGDCH A KYIS
Sbjct: 907 TGFALYDLEQENKEEILSYHSEKLAVAFVLAAQRSSTLPIRIMKNLRVCGDCHSAFKYIS 966
Query: 517 AIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
IE R+II+RD+ RFHHF+DG CSC D+W
Sbjct: 967 KIEGRQIILRDSNRFHHFQDGACSCSDFW 995
Score = 106 bits (264), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 63/182 (34%), Positives = 100/182 (54%), Gaps = 9/182 (4%)
Query: 107 MISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGL 166
+I+ Y+E G A ++F P+++ V+W ++SGY + N ++ L LR M+
Sbjct: 42 LINAYLETGDSVSARKVFDEMPLRNCVSWACIVSGYSR-----NGEHKEALVFLRDMVKE 96
Query: 167 GIRPNASSLSSVLLGCSHLSSLQL--GKQVHQLVFKSPLCKDTTALTPLISMYCKC-GDL 223
GI N + SVL C + S+ + G+Q+H L+FK D LISMY KC G +
Sbjct: 97 GIFSNQYAFVSVLRACQEIGSVGILFGRQIHGLMFKLSYAVDAVVSNVLISMYWKCIGSV 156
Query: 224 EDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL-LA 282
A F +I+ K+ V+WN++IS Y+Q G A R+F M+ +G +P TF +L+ A
Sbjct: 157 GYALCAFGDIEVKNSVSWNSIISVYSQAGDQRSAFRIFSSMQYDGSRPTEYTFGSLVTTA 216
Query: 283 CN 284
C+
Sbjct: 217 CS 218
Score = 87.8 bits (216), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 90/328 (27%), Positives = 155/328 (47%), Gaps = 17/328 (5%)
Query: 21 GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWN-TMISG 79
G + DA+ +F + D VS+N M++ + N + A + ++ + D + T+IS
Sbjct: 363 GSIADARRVFYFMTDKDSVSWNSMITGLDQNG-CFIEAVERYKSMRRHDILPGSFTLISS 421
Query: 80 FVQKKNMAKAR--------DLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKS 131
++ A+ L L + SVS +A+++ Y E G L++ ++F P
Sbjct: 422 LSSCASLKWAKLGQQIHGESLKLGIDLNVSVS-NALMTLYAETGYLNECRKIFSSMPEHD 480
Query: 132 VVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLG 191
V+W ++I + E S E + L G + N + SSVL S LS +LG
Sbjct: 481 QVSWNSIIGALAR---SERSLPEAVVCFLNAQRA-GQKLNRITFSSVLSAVSSLSFGELG 536
Query: 192 KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI-QRKDVVTWNAMISGYAQ 250
KQ+H L K+ + + T LI+ Y KCG+++ K+F + +R+D VTWN+MISGY
Sbjct: 537 KQIHGLALKNNIADEATTENALIACYGKCGEMDGCEKIFSRMAERRDNVTWNSMISGYIH 596
Query: 251 HGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPD 310
+ KAL L M G + DS + +L A ++ G++ V + +
Sbjct: 597 NELLAKALDLVWFMLQTGQRLDSFMYATVLSAFASVATLERGMEVHACSVRAC-LESDVV 655
Query: 311 HYTCMVDLLGRAGKLVEAVDLIKKMPFK 338
+ +VD+ + G+L A+ MP +
Sbjct: 656 VGSALVDMYSKCGRLDYALRFFNTMPVR 683
Score = 82.0 bits (201), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 84/365 (23%), Positives = 140/365 (38%), Gaps = 55/365 (15%)
Query: 37 DVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM 96
D V N+++S V A F + +K++ SWN++IS + Q + A +F +M
Sbjct: 138 DAVVSNVLISMYWKCIGSVGYALCAFGDIEVKNSVSWNSIISVYSQAGDQRSAFRIFSSM 197
Query: 97 PEKNS-----------------------------------------VSWSAMISGYIECG 115
S S ++S + + G
Sbjct: 198 QYDGSRPTEYTFGSLVTTACSLTEPDVRLLEQIMCTIQKSGLLTDLFVGSGLVSAFAKSG 257
Query: 116 QLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKL---LRMMIGLGIRPNA 172
L A ++F ++ V ++ G V W E+ KL + MI +
Sbjct: 258 SLSYARKVFNQMETRNAVTLNGLM-----VGLVRQKWGEEATKLFMDMNSMIDVSPESYV 312
Query: 173 SSLSSV-LLGCSHLSSLQLGKQVHQLVFKSPLCKDTTAL-TPLISMYCKCGDLEDACKLF 230
LSS + L+ G++VH V + L + L++MY KCG + DA ++F
Sbjct: 313 ILLSSFPEYSLAEEVGLKKGREVHGHVITTGLVDFMVGIGNGLVNMYAKCGSIADARRVF 372
Query: 231 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVD 290
+ KD V+WN+MI+G Q+G +A+ + M+ + P S T ++ L +C
Sbjct: 373 YFMTDKDSVSWNSMITGLDQNGCFIEAVERYKSMRRHDILPGSFTLISSLSSCASLKWAK 432
Query: 291 LGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQ---PAIFGTL 347
LG Q + GI ++ L G L E + MP Q +I G L
Sbjct: 433 LGQQIHGESLK-LGIDLNVSVSNALMTLYAETGYLNECRKIFSSMPEHDQVSWNSIIGAL 491
Query: 348 LSACR 352
+ R
Sbjct: 492 ARSER 496
Score = 70.1 bits (170), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 64/285 (22%), Positives = 125/285 (43%), Gaps = 39/285 (13%)
Query: 74 NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVV 133
N +++ + + ++A AR +F M +K+SVSW++MI+G + G +AVE +K
Sbjct: 353 NGLVNMYAKCGSIADARRVFYFMTDKDSVSWNSMITGLDQNGCFIEAVERYKS------- 405
Query: 134 AWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ 193
M I P + +L S L C+ L +LG+Q
Sbjct: 406 -----------------------------MRRHDILPGSFTLISSLSSCASLKWAKLGQQ 436
Query: 194 VHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGK 253
+H K + + + L+++Y + G L + K+F + D V+WN++I A+ +
Sbjct: 437 IHGESLKLGIDLNVSVSNALMTLYAETGYLNECRKIFSSMPEHDQVSWNSIIGALARSER 496
Query: 254 G-EKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY 312
+A+ F + G K + ITF ++L A + +LG Q + + IA +
Sbjct: 497 SLPEAVVCFLNAQRAGQKLNRITFSSVLSAVSSLSFGELGKQIHGLALKN-NIADEATTE 555
Query: 313 TCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRL 357
++ G+ G++ + +M + + +++S +H L
Sbjct: 556 NALIACYGKCGEMDGCEKIFSRMAERRDNVTWNSMISG-YIHNEL 599
Score = 64.7 bits (156), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 108/477 (22%), Positives = 188/477 (39%), Gaps = 111/477 (23%)
Query: 50 LNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKA----RDL------------- 92
L + D V+A F +P+++ SW ++SG+ + +A RD+
Sbjct: 47 LETGDSVSARKVFDEMPLRNCVSWACIVSGYSRNGEHKEALVFLRDMVKEGIFSNQYAFV 106
Query: 93 --FLAMPEKNSVSW----------------------SAMISGYIEC-GQLDKAVELFKVA 127
A E SV + +IS Y +C G + A+ F
Sbjct: 107 SVLRACQEIGSVGILFGRQIHGLMFKLSYAVDAVVSNVLISMYWKCIGSVGYALCAFGDI 166
Query: 128 PVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSS 187
VK+ V+W ++IS Y + G +++ ++ M G RP + S++ L+
Sbjct: 167 EVKNSVSWNSIISVYSQAGDQRSAF-----RIFSSMQYDGSRPTEYTFGSLVTTACSLTE 221
Query: 188 --LQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMI 245
++L +Q+ + KS L D + L+S + K G L A K+F +++ ++ VT N ++
Sbjct: 222 PDVRLLEQIMCTIQKSGLLTDLFVGSGLVSAFAKSGSLSYARKVFNQMETRNAVTLNGLM 281
Query: 246 SGYAQHGKGEKALRLFDKMKDE-GMKPDSITFVALLLACNH------------------- 285
G + GE+A +LF M + P+S +V LL +
Sbjct: 282 VGLVRQKWGEEATKLFMDMNSMIDVSPES--YVILLSSFPEYSLAEEVGLKKGREVHGHV 339
Query: 286 --AGLVDLGIQYFDSMVNDY---GIAAKPDH------------YTCMVDLLGRAGKLVEA 328
GLVD + + +VN Y G A + M+ L + G +EA
Sbjct: 340 ITTGLVDFMVGIGNGLVNMYAKCGSIADARRVFYFMTDKDSVSWNSMITGLDQNGCFIEA 399
Query: 329 VDLIKKM---PFKPQPAIFGTLLSACRVHKRLDLAE---FAAMNL---FNLNPANAAGCY 379
V+ K M P + LS+C K L + ++ L N++ +NA
Sbjct: 400 VERYKSMRRHDILPGSFTLISSLSSCASLKWAKLGQQIHGESLKLGIDLNVSVSNA---- 455
Query: 380 VQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELV 436
L +YA ++ +I SM E++ V SW +++ +R PE V
Sbjct: 456 --LMTLYAETGYLNECRKIFSSMPEHDQV-----SW---NSIIGALARSERSLPEAV 502
Score = 62.0 bits (149), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 55/97 (56%)
Query: 195 HQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKG 254
H ++K+ L KD LI+ Y + GD A K+F E+ ++ V+W ++SGY+++G+
Sbjct: 24 HSRLYKNRLDKDVYLCNNLINAYLETGDSVSARKVFDEMPLRNCVSWACIVSGYSRNGEH 83
Query: 255 EKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDL 291
++AL M EG+ + FV++L AC G V +
Sbjct: 84 KEALVFLRDMVKEGIFSNQYAFVSVLRACQEIGSVGI 120
>sp|Q8S9M4|PP198_ARATH Pentatricopeptide repeat-containing protein At2g41080
OS=Arabidopsis thaliana GN=PCMP-H29 PE=2 SV=2
Length = 650
Score = 398 bits (1022), Expect = e-110, Method: Compositional matrix adjust.
Identities = 224/576 (38%), Positives = 322/576 (55%), Gaps = 48/576 (8%)
Query: 10 NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
N +++ ++K G A ++ ++ + + +S NI+++ + + D+V A F +P +
Sbjct: 83 NHLMSMYSKL-GDFPSAVAVYGRMRKKNYMSSNILING-YVRAGDLVNARKVFDEMPDRK 140
Query: 70 TASWNTMISGFVQKKNMAKARDLFLAM------PEK-------------NSVSWSAMISG 110
+WN MI+G +Q + + LF M P++ SVS I G
Sbjct: 141 LTTWNAMIAGLIQFEFNEEGLSLFREMHGLGFSPDEYTLGSVFSGSAGLRSVSIGQQIHG 200
Query: 111 Y--------------------IECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVEN 150
Y + G+L + + PV+++VAW +I G +N
Sbjct: 201 YTIKYGLELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLI-----MGNAQN 255
Query: 151 SWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTAL 210
E L L +MM G RPN + +VL CS L+ G+Q+H K +
Sbjct: 256 GCPETVLYLYKMMKISGCRPNKITFVTVLSSCSDLAIRGQGQQIHAEAIKIGASSVVAVV 315
Query: 211 TPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE-GM 269
+ LISMY KCG L DA K F E + +D V W++MIS Y HG+G++A+ LF+ M ++ M
Sbjct: 316 SSLISMYSKCGCLGDAAKAFSEREDEDEVMWSSMISAYGFHGQGDEAIELFNTMAEQTNM 375
Query: 270 KPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAV 329
+ + + F+ LL AC+H+GL D G++ FD MV YG HYTC+VDLLGRAG L +A
Sbjct: 376 EINEVAFLNLLYACSHSGLKDKGLELFDMMVEKYGFKPGLKHYTCVVDLLGRAGCLDQAE 435
Query: 330 DLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAM 389
+I+ MP K I+ TLLSAC +HK ++A+ + ++P N + CYV LAN++A+
Sbjct: 436 AIIRSMPIKTDIVIWKTLLSACNIHKNAEMAQRVFKEILQIDP-NDSACYVLLANVHASA 494
Query: 390 KKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRM 449
K+W DV+ +R SM++ NV K G SW E VH+F+ GDR + I+ LKEL M
Sbjct: 495 KRWRDVSEVRKSMRDKNVKKEAGISWFEHKGEVHQFKMGDRSQSKSKEIYSYLKELTLEM 554
Query: 450 KLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCH 509
KL GY PD LH + EE KE L+ HSEKLA+AF L+ +P G PIR+ KNLRVC DCH
Sbjct: 555 KLKGYKPDTASVLHDMDEEEKESDLVQHSEKLAVAFALMILPEGAPIRIIKNLRVCSDCH 614
Query: 510 RATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
A KYIS I+ REI +RD +RFHHF +G CSCGDYW
Sbjct: 615 VAFKYISVIKNREITLRDGSRFHHFINGKCSCGDYW 650
Score = 68.9 bits (167), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 74/158 (46%), Gaps = 7/158 (4%)
Query: 166 LGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLED 225
L I N S + + C+ SL GKQ+H L+ S D L+SMY K GD
Sbjct: 38 LNIFTNTSLFTPFIQSCTTRQSLPSGKQLHCLLVVSGFSSDKFICNHLMSMYSKLGDFPS 97
Query: 226 ACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNH 285
A ++ +++K+ ++ N +I+GY + G A ++FD+M D + T+ A++
Sbjct: 98 AVAVYGRMRKKNYMSSNILINGYVRAGDLVNARKVFDEMPDRKL----TTWNAMIAGLIQ 153
Query: 286 AGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAG 323
+ G+ F M +G+ PD YT G AG
Sbjct: 154 FEFNEEGLSLFREM---HGLGFSPDEYTLGSVFSGSAG 188
>sp|Q9LIC3|PP227_ARATH Putative pentatricopeptide repeat-containing protein At3g13770,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H85 PE=3
SV=1
Length = 628
Score = 396 bits (1018), Expect = e-109, Method: Compositional matrix adjust.
Identities = 210/532 (39%), Positives = 313/532 (58%), Gaps = 15/532 (2%)
Query: 23 LKDAQELFDKIPQPDVVSYNIMLS--CILLNSDDVVAAFDFFQRLPIK-DTASWNTMISG 79
L+DA+++ D++P+ +VVS+ M+S +S + + F R K + ++ T+++
Sbjct: 103 LEDARKVLDEMPEKNVVSWTAMISRYSQTGHSSEALTVFAEMMRSDGKPNEFTFATVLTS 162
Query: 80 FVQKKNMAKARDLFLAMPEKNSVSW----SAMISGYIECGQLDKAVELFKVAPVKSVVAW 135
++ + + + + + N S S+++ Y + GQ+ +A E+F+ P + VV+
Sbjct: 163 CIRASGLGLGKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIKEAREIFECLPERDVVSC 222
Query: 136 TAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVH 195
TA+I+GY + G E+ L++ + G+ PN + +S+L S L+ L GKQ H
Sbjct: 223 TAIIAGYAQLG-----LDEEALEMFHRLHSEGMSPNYVTYASLLTALSGLALLDHGKQAH 277
Query: 196 QLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGE 255
V + L LI MY KCG+L A +LF + + ++WNAM+ GY++HG G
Sbjct: 278 CHVLRRELPFYAVLQNSLIDMYSKCGNLSYARRLFDNMPERTAISWNAMLVGYSKHGLGR 337
Query: 256 KALRLFDKMKDEG-MKPDSITFVALLLACNHAGLVDLGIQYFDSMV-NDYGIAAKPDHYT 313
+ L LF M+DE +KPD++T +A+L C+H + D G+ FD MV +YG +HY
Sbjct: 338 EVLELFRLMRDEKRVKPDAVTLLAVLSGCSHGRMEDTGLNIFDGMVAGEYGTKPGTEHYG 397
Query: 314 CMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPA 373
C+VD+LGRAG++ EA + IK+MP KP + G+LL ACRVH +D+ E L + P
Sbjct: 398 CIVDMLGRAGRIDEAFEFIKRMPSKPTAGVLGSLLGACRVHLSVDIGESVGRRLIEIEPE 457
Query: 374 NAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHP 433
NA G YV L+N+YA+ +W DV +R M + V K PG SWI+ +H F + DR HP
Sbjct: 458 NA-GNYVILSNLYASAGRWADVNNVRAMMMQKAVTKEPGRSWIQHEQTLHYFHANDRTHP 516
Query: 434 ELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLG 493
+ K+KE+ +MK AGYVPDL L+ V EE KE++LL HSEKLA+ FGLI G
Sbjct: 517 RREEVLAKMKEISIKMKQAGYVPDLSCVLYDVDEEQKEKMLLGHSEKLALTFGLIATGEG 576
Query: 494 TPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
PIRVFKNLR+C DCH K S + +RE+ +RD RFH DG CSCGDYW
Sbjct: 577 IPIRVFKNLRICVDCHNFAKIFSKVFEREVSLRDKNRFHQIVDGICSCGDYW 628
Score = 117 bits (293), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 73/230 (31%), Positives = 120/230 (52%), Gaps = 14/230 (6%)
Query: 111 YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRP 170
Y +C L+ A ++ P K+VV+WTAMIS Y + G+ + + L + M+ +P
Sbjct: 97 YGKCDCLEDARKVLDEMPEKNVVSWTAMISRYSQTGH-----SSEALTVFAEMMRSDGKP 151
Query: 171 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 230
N + ++VL C S L LGKQ+H L+ K + L+ MY K G +++A ++F
Sbjct: 152 NEFTFATVLTSCIRASGLGLGKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIKEAREIF 211
Query: 231 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVD 290
+ +DVV+ A+I+GYAQ G E+AL +F ++ EGM P+ +T+ +LL A + L+D
Sbjct: 212 ECLPERDVVSCTAIIAGYAQLGLDEEALEMFHRLHSEGMSPNYVTYASLLTALSGLALLD 271
Query: 291 LGIQYFDSMVND----YGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 336
G Q ++ Y + ++D+ + G L A L MP
Sbjct: 272 HGKQAHCHVLRRELPFYAVLQNS-----LIDMYSKCGNLSYARRLFDNMP 316
Score = 83.6 bits (205), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 69/266 (25%), Positives = 120/266 (45%), Gaps = 13/266 (4%)
Query: 124 FKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCS 183
F +P V+ IS G ++ + E M LG ++L C
Sbjct: 12 FSSSPTNYVLQTILPISQLCSNGRLQEALLE--------MAMLGPEMGFHGYDALLNACL 63
Query: 184 HLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNA 243
+L+ G++VH + K+ T T L+ Y KC LEDA K+ E+ K+VV+W A
Sbjct: 64 DKRALRDGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKNVVSWTA 123
Query: 244 MISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDY 303
MIS Y+Q G +AL +F +M KP+ TF +L +C A + LG Q ++ +
Sbjct: 124 MISRYSQTGHSSEALTVFAEMMRSDGKPNEFTFATVLTSCIRASGLGLGKQ-IHGLIVKW 182
Query: 304 GIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFA 363
+ + ++D+ +AG++ EA ++ + +P + + + + +L L E A
Sbjct: 183 NYDSHIFVGSSLLDMYAKAGQIKEAREIFECLPERDVVSCTAIIAG----YAQLGLDEEA 238
Query: 364 AMNLFNLNPANAAGCYVQLANIYAAM 389
L+ + YV A++ A+
Sbjct: 239 LEMFHRLHSEGMSPNYVTYASLLTAL 264
Score = 69.3 bits (168), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 62/198 (31%), Positives = 97/198 (48%), Gaps = 29/198 (14%)
Query: 7 VNWN---------SVLAGFAKQRGKLKDAQELFDKIPQPDVVSYN-IMLSCILLNSDDVV 56
V WN S+L +AK G++K+A+E+F+ +P+ DVVS I+ L D+
Sbjct: 180 VKWNYDSHIFVGSSLLDMYAKA-GQIKEAREIFECLPERDVVSCTAIIAGYAQLGLDE-- 236
Query: 57 AAFDFFQRLPIKDT-------ASWNTMISG--FVQKKNMAKARDLFLAMPEKNSVSWSAM 107
A + F RL + AS T +SG + A L +P +V +++
Sbjct: 237 EALEMFHRLHSEGMSPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELP-FYAVLQNSL 295
Query: 108 ISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLG 167
I Y +CG L A LF P ++ ++W AM+ GY K G + L+L R+M
Sbjct: 296 IDMYSKCGNLSYARRLFDNMPERTAISWNAMLVGYSKHG-----LGREVLELFRLMRDEK 350
Query: 168 -IRPNASSLSSVLLGCSH 184
++P+A +L +VL GCSH
Sbjct: 351 RVKPDAVTLLAVLSGCSH 368
>sp|Q9FND6|PP411_ARATH Pentatricopeptide repeat-containing protein At5g40410,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H15 PE=2
SV=1
Length = 608
Score = 395 bits (1014), Expect = e-109, Method: Compositional matrix adjust.
Identities = 216/533 (40%), Positives = 312/533 (58%), Gaps = 22/533 (4%)
Query: 26 AQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTA------SWNTMISG 79
A++LFD++P+ D+VS+N ++S + F+ R+ I + ++ +MIS
Sbjct: 85 AEKLFDEMPERDLVSWNSLISG-YSGRGYLGKCFEVLSRMMISEVGFRPNEVTFLSMISA 143
Query: 80 FVQKKNMAKARDL------FLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVV 133
V + + R + F + E V+ A I+ Y + G L + +LF+ +K++V
Sbjct: 144 CVYGGSKEEGRCIHGLVMKFGVLEEVKVVN--AFINWYGKTGDLTSSCKLFEDLSIKNLV 201
Query: 134 AWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ 193
+W MI +++N AE GL M +G P+ ++ +VL C + ++L +
Sbjct: 202 SWNTMI-----VIHLQNGLAEKGLAYFNMSRRVGHEPDQATFLAVLRSCEDMGVVRLAQG 256
Query: 194 VHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGK 253
+H L+ + T L+ +Y K G LED+ +F EI D + W AM++ YA HG
Sbjct: 257 IHGLIMFGGFSGNKCITTALLDLYSKLGRLEDSSTVFHEITSPDSMAWTAMLAAYATHGF 316
Query: 254 GEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYT 313
G A++ F+ M G+ PD +TF LL AC+H+GLV+ G YF++M Y I + DHY+
Sbjct: 317 GRDAIKHFELMVHYGISPDHVTFTHLLNACSHSGLVEEGKHYFETMSKRYRIDPRLDHYS 376
Query: 314 CMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPA 373
CMVDLLGR+G L +A LIK+MP +P ++G LL ACRV+K L AA LF L P
Sbjct: 377 CMVDLLGRSGLLQDAYGLIKEMPMEPSSGVWGALLGACRVYKDTQLGTKAAERLFELEPR 436
Query: 374 NAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHP 433
+ YV L+NIY+A W D +RIR MK+ +V+ G S+IE G +H+F GD HP
Sbjct: 437 DGRN-YVMLSNIYSASGLWKDASRIRNLMKQKGLVRASGCSYIEHGNKIHKFVVGDWSHP 495
Query: 434 ELVSIHEKLKELEKRMKLA-GYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPL 492
E I +KLKE+ K+MK GY EF LH VGE+VKE+++ HSEK+A+AFGL+ V
Sbjct: 496 ESEKIQKKLKEIRKKMKSEMGYKSKTEFVLHDVGEDVKEEMINQHSEKIAMAFGLLVVSP 555
Query: 493 GTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
PI + KNLR+CGDCH K IS IEKR II+RD+ RFHHF DG+CSC DYW
Sbjct: 556 MEPIIIRKNLRICGDCHETAKAISLIEKRRIIIRDSKRFHHFLDGSCSCSDYW 608
Score = 123 bits (308), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 79/269 (29%), Positives = 137/269 (50%), Gaps = 9/269 (3%)
Query: 107 MISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIG- 165
++ Y+ G A +LF P + +V+W ++ISGY GY+ + L RMMI
Sbjct: 72 LVGCYLRLGHDVCAEKLFDEMPERDLVSWNSLISGYSGRGYLGKCFE----VLSRMMISE 127
Query: 166 LGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLED 225
+G RPN + S++ C + S + G+ +H LV K + ++ + I+ Y K GDL
Sbjct: 128 VGFRPNEVTFLSMISACVYGGSKEEGRCIHGLVMKFGVLEEVKVVNAFINWYGKTGDLTS 187
Query: 226 ACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNH 285
+CKLF ++ K++V+WN MI + Q+G EK L F+ + G +PD TF+A+L +C
Sbjct: 188 SCKLFEDLSIKNLVSWNTMIVIHLQNGLAEKGLAYFNMSRRVGHEPDQATFLAVLRSCED 247
Query: 286 AGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFG 345
G+V L Q ++ G + T ++DL + G+L ++ + ++ P +
Sbjct: 248 MGVVRLA-QGIHGLIMFGGFSGNKCITTALLDLYSKLGRLEDSSTVFHEIT-SPDSMAWT 305
Query: 346 TLLSACRVH--KRLDLAEFAAMNLFNLNP 372
+L+A H R + F M + ++P
Sbjct: 306 AMLAAYATHGFGRDAIKHFELMVHYGISP 334
Score = 74.7 bits (182), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/246 (24%), Positives = 118/246 (47%), Gaps = 13/246 (5%)
Query: 171 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 230
N SSL + + C S++L + +H V KS + L+ Y + G A KLF
Sbjct: 33 NVSSLIAAVKSCV---SIELCRLLHCKVVKSVSYRHGFIGDQLVGCYLRLGHDVCAEKLF 89
Query: 231 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKM--KDEGMKPDSITFVALLLACNHAGL 288
E+ +D+V+WN++ISGY+ G K + +M + G +P+ +TF++++ AC + G
Sbjct: 90 DEMPERDLVSWNSLISGYSGRGYLGKCFEVLSRMMISEVGFRPNEVTFLSMISACVYGGS 149
Query: 289 VDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLL 348
+ G + +V +G+ + ++ G+ G L + L + + K + + T++
Sbjct: 150 KEEG-RCIHGLVMKFGVLEEVKVVNAFINWYGKTGDLTSSCKLFEDLSIKNLVS-WNTMI 207
Query: 349 SACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVV 408
+H + LAE + FN+ + G A A ++ +D+ +RL+ + ++
Sbjct: 208 V---IHLQNGLAE-KGLAYFNM--SRRVGHEPDQATFLAVLRSCEDMGVVRLAQGIHGLI 261
Query: 409 KMPGYS 414
G+S
Sbjct: 262 MFGGFS 267
>sp|Q7Y211|PP285_ARATH Pentatricopeptide repeat-containing protein At3g57430,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H81 PE=2
SV=2
Length = 890
Score = 395 bits (1014), Expect = e-109, Method: Compositional matrix adjust.
Identities = 218/547 (39%), Positives = 303/547 (55%), Gaps = 58/547 (10%)
Query: 51 NSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK-----NSVSWS 105
N V++ F + + WN MI+G+ Q ++ +A LF+ M E NS + +
Sbjct: 350 NCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMA 409
Query: 106 AMISG-----------------------------------YIECGQLDKAVELFKVAPVK 130
++ Y G++D A+ +F +
Sbjct: 410 GVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDR 469
Query: 131 SVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGL-----------GIRPNASSLSSVL 179
+V W MI+GY V + ED L LL M L ++PN+ +L ++L
Sbjct: 470 DLVTWNTMITGY-----VFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTIL 524
Query: 180 LGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVV 239
C+ LS+L GK++H K+ L D + L+ MY KCG L+ + K+F +I +K+V+
Sbjct: 525 PSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVI 584
Query: 240 TWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSM 299
TWN +I Y HG G++A+ L M +G+KP+ +TF+++ AC+H+G+VD G++ F M
Sbjct: 585 TWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVM 644
Query: 300 VNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPA-IFGTLLSACRVHKRLD 358
DYG+ DHY C+VDLLGRAG++ EA L+ MP A + +LL A R+H L+
Sbjct: 645 KPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLE 704
Query: 359 LAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEV 418
+ E AA NL L P N A YV LANIY++ WD +R +MKE V K PG SWIE
Sbjct: 705 IGEIAAQNLIQLEP-NVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIEH 763
Query: 419 GTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHS 478
G VH+F +GD HP+ + L+ L +RM+ GYVPD LH V E+ KE LL HS
Sbjct: 764 GDEVHKFVAGDSSHPQSEKLSGYLETLWERMRKEGYVPDTSCVLHNVEEDEKEILLCGHS 823
Query: 479 EKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGT 538
EKLAIAFG++ GT IRV KNLRVC DCH ATK+IS I REII+RD RFH FK+GT
Sbjct: 824 EKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLATKFISKIVDREIILRDVRRFHRFKNGT 883
Query: 539 CSCGDYW 545
CSCGDYW
Sbjct: 884 CSCGDYW 890
Score = 97.4 bits (241), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 83/341 (24%), Positives = 155/341 (45%), Gaps = 17/341 (4%)
Query: 6 TVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRL 65
+V + L ++ G ++FD+I + + VS+N ++S + +A F L
Sbjct: 132 SVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCML 191
Query: 66 PIKDTASWNTMISGFVQKKNMAKARDLFLAMP---------EKNSVSWSAMISGYIECGQ 116
S T++S N+ L + E NS + +++ Y + G+
Sbjct: 192 DENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGELNSFIINTLVAMYGKLGK 251
Query: 117 LDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLS 176
L + L + +V W ++S +N + L+ LR M+ G+ P+ ++S
Sbjct: 252 LASSKVLLGSFGGRDLVTWNTVLSSL-----CQNEQLLEALEYLREMVLEGVEPDEFTIS 306
Query: 177 SVLLGCSHLSSLQLGKQVHQLVFKS-PLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR 235
SVL CSHL L+ GK++H K+ L +++ + L+ MYC C + ++F +
Sbjct: 307 SVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFD 366
Query: 236 KDVVTWNAMISGYAQHGKGEKALRLFDKMKDE-GMKPDSITFVALLLACNHAGLVDLGIQ 294
+ + WNAMI+GY+Q+ ++AL LF M++ G+ +S T ++ AC +G +
Sbjct: 367 RKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRK-E 425
Query: 295 YFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335
V G+ ++D+ R GK+ A+ + KM
Sbjct: 426 AIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKM 466
Score = 86.7 bits (213), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 60/204 (29%), Positives = 103/204 (50%), Gaps = 6/204 (2%)
Query: 163 MIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDT-TALTPLISMYCKCG 221
MI LGI+P+ + ++L + L ++LGKQ+H V+K D+ T L+++Y KCG
Sbjct: 88 MIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCG 147
Query: 222 DLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLL 281
D K+F I ++ V+WN++IS K E AL F M DE ++P S T V+++
Sbjct: 148 DFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVT 207
Query: 282 ACNHAGLVDLGIQYFDSMVNDYGIAAKPDH---YTCMVDLLGRAGKLVEAVDLIKKMPFK 338
AC++ + + G+ V+ YG+ + +V + G+ GKL + L+ +
Sbjct: 208 ACSNLPMPE-GLM-MGKQVHAYGLRKGELNSFIINTLVAMYGKLGKLASSKVLLGSFGGR 265
Query: 339 PQPAIFGTLLSACRVHKRLDLAEF 362
L S C+ + L+ E+
Sbjct: 266 DLVTWNTVLSSLCQNEQLLEALEY 289
Score = 34.3 bits (77), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 61/302 (20%), Positives = 122/302 (40%), Gaps = 75/302 (24%)
Query: 2 NVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDF 61
N+ T V S L + G L+ ++++FD+IPQ +V+
Sbjct: 547 NLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVI---------------------- 584
Query: 62 FQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAM----PEKNSVSWSAMISGYIECGQL 117
+WN +I + N +A DL M + N V++ ++ + G +
Sbjct: 585 ----------TWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMV 634
Query: 118 DKAVELFKVAPVKSVVA-----WTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRP-- 170
D+ + +F V V + ++ + G ++ ++ +L+ MM P
Sbjct: 635 DEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAY-----QLMNMM------PRD 683
Query: 171 -NASSLSSVLLGCSHL-SSLQLGKQVHQ-LVFKSPLCKDTTALTPLISMYCKCGDLEDAC 227
N + S LLG S + ++L++G+ Q L+ P L L ++Y G + A
Sbjct: 684 FNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVL--LANIYSSAGLWDKAT 741
Query: 228 KLFLEIQRKDV-----VTW-------NAMISGYAQHGKGEKAL----RLFDKMKDEGMKP 271
++ ++ + V +W + ++G + H + EK L+++M+ EG P
Sbjct: 742 EVRRNMKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLSGYLETLWERMRKEGYVP 801
Query: 272 DS 273
D+
Sbjct: 802 DT 803
>sp|Q9SMZ2|PP347_ARATH Pentatricopeptide repeat-containing protein At4g33170
OS=Arabidopsis thaliana GN=PCMP-H53 PE=3 SV=1
Length = 990
Score = 394 bits (1013), Expect = e-109, Method: Compositional matrix adjust.
Identities = 226/623 (36%), Positives = 330/623 (52%), Gaps = 86/623 (13%)
Query: 1 MNVKTTVNWNSVLAGFAKQRGKLKDAQELF----------------------DKIPQPDV 38
M+ + ++WNSV+AG A Q G +A LF +P+
Sbjct: 376 MSERDLISWNSVIAGIA-QNGLEVEAVCLFMQLLRCGLKPDQYTMTSVLKAASSLPEGLS 434
Query: 39 VSYNIMLSCILLN--SDDVVA---------------AFDFFQRLPIKDTASWNTMISGFV 81
+S + + I +N SD V+ A F+R D +WN M++G+
Sbjct: 435 LSKQVHVHAIKINNVSDSFVSTALIDAYSRNRCMKEAEILFERHNF-DLVAWNAMMAGYT 493
Query: 82 QKKNMAKARDLFLAMPEKNSVS-------------------------------------W 104
Q + K LF M ++ S W
Sbjct: 494 QSHDGHKTLKLFALMHKQGERSDDFTLATVFKTCGFLFAINQGKQVHAYAIKSGYDLDLW 553
Query: 105 --SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRM 162
S ++ Y++CG + A F PV VAWT MISG +EN E +
Sbjct: 554 VSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMISGC-----IENGEEERAFHVFSQ 608
Query: 163 MIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGD 222
M +G+ P+ +++++ S L++L+ G+Q+H K D T L+ MY KCG
Sbjct: 609 MRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCTNDPFVGTSLVDMYAKCGS 668
Query: 223 LEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA 282
++DA LF I+ ++ WNAM+ G AQHG+G++ L+LF +MK G+KPD +TF+ +L A
Sbjct: 669 IDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGKETLQLFKQMKSLGIKPDKVTFIGVLSA 728
Query: 283 CNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPA 342
C+H+GLV ++ SM DYGI + +HY+C+ D LGRAG + +A +LI+ M + +
Sbjct: 729 CSHSGLVSEAYKHMRSMHGDYGIKPEIEHYSCLADALGRAGLVKQAENLIESMSMEASAS 788
Query: 343 IFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSM 402
++ TLL+ACRV + + A L L P +++ YV L+N+YAA KWD++ R M
Sbjct: 789 MYRTLLAACRVQGDTETGKRVATKLLELEPLDSSA-YVLLSNMYAAASKWDEMKLARTMM 847
Query: 403 KENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFAL 462
K + V K PG+SWIEV +H F DR + + I+ K+K++ + +K GYVP+ +F L
Sbjct: 848 KGHKVKKDPGFSWIEVKNKIHIFVVDDRSNRQTELIYRKVKDMIRDIKQEGYVPETDFTL 907
Query: 463 HAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKRE 522
V EE KE+ L +HSEKLA+AFGL+ P TPIRV KNLRVCGDCH A KYI+ + RE
Sbjct: 908 VDVEEEEKERALYYHSEKLAVAFGLLSTPPSTPIRVIKNLRVCGDCHNAMKYIAKVYNRE 967
Query: 523 IIVRDTTRFHHFKDGTCSCGDYW 545
I++RD RFH FKDG CSCGDYW
Sbjct: 968 IVLRDANRFHRFKDGICSCGDYW 990
Score = 107 bits (266), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 95/337 (28%), Positives = 158/337 (46%), Gaps = 22/337 (6%)
Query: 10 NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
NS++ + K R K A+ +FD + + D++S+N +++ I N +V A F Q L
Sbjct: 354 NSLINMYCKLR-KFGFARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCLFMQLLRCGL 412
Query: 70 TASWNTMISGFVQKKNMAK----ARDLFLAMPEKNSVSWS----AMISGYIECGQLDKAV 121
TM S ++ + ++ + + + N+VS S A+I Y + +A
Sbjct: 413 KPDQYTMTSVLKAASSLPEGLSLSKQVHVHAIKINNVSDSFVSTALIDAYSRNRCMKEAE 472
Query: 122 ELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDG---LKLLRMMIGLGIRPNASSLSSV 178
LF+ +VAW AM++GY + + DG LKL +M G R + +L++V
Sbjct: 473 ILFERHNF-DLVAWNAMMAGYTQ--------SHDGHKTLKLFALMHKQGERSDDFTLATV 523
Query: 179 LLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDV 238
C L ++ GKQVH KS D + ++ MY KCGD+ A F I D
Sbjct: 524 FKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDD 583
Query: 239 VTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDS 298
V W MISG ++G+ E+A +F +M+ G+ PD T L A + ++ G Q +
Sbjct: 584 VAWTTMISGCIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHAN 643
Query: 299 MVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335
+ P T +VD+ + G + +A L K++
Sbjct: 644 ALK-LNCTNDPFVGTSLVDMYAKCGSIDDAYCLFKRI 679
Score = 79.3 bits (194), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 81/323 (25%), Positives = 145/323 (44%), Gaps = 46/323 (14%)
Query: 7 VNWNSVLAGFAKQRG----KLKDAQELFDKIPQPDVVSYNIMLSCIL---LNSDDVVAAF 59
V+WNS+LA +A+ ++ A LF + Q V + + LS +L L+S V A+
Sbjct: 106 VSWNSILAAYAQSSECVVENIQQAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVWAS- 164
Query: 60 DFFQRLPIKDTASWNTMISG-----FVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIEC 114
+ F K + ++G +++ + + + LF MP ++ V W+ M+ Y+E
Sbjct: 165 ESFHGYACKIGLDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKAYLEM 224
Query: 115 GQLDKAVELFK------VAPVKSVVAWTAMISG------------------------YMK 144
G ++A++L + P + + A ISG +
Sbjct: 225 GFKEEAIDLSSAFHSSGLNPNEITLRLLARISGDDSDAGQVKSFANGNDASSVSEIIFRN 284
Query: 145 FG---YVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKS 201
G Y+ + LK M+ + + + +L + SL LG+QVH + K
Sbjct: 285 KGLSEYLHSGQYSALLKCFADMVESDVECDQVTFILMLATAVKVDSLALGQQVHCMALKL 344
Query: 202 PLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLF 261
L T LI+MYCK A +F + +D+++WN++I+G AQ+G +A+ LF
Sbjct: 345 GLDLMLTVSNSLINMYCKLRKFGFARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCLF 404
Query: 262 DKMKDEGMKPDSITFVALLLACN 284
++ G+KPD T ++L A +
Sbjct: 405 MQLLRCGLKPDQYTMTSVLKAAS 427
Score = 73.2 bits (178), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 82/172 (47%), Gaps = 4/172 (2%)
Query: 107 MISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFG--YVENSWAEDGLKLLRMMI 164
+IS Y +CG L A +F P + +V+W ++++ Y + VEN + L R++
Sbjct: 80 LISMYSKCGSLTYARRVFDKMPDRDLVSWNSILAAYAQSSECVVEN--IQQAFLLFRILR 137
Query: 165 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 224
+ + +LS +L C H + + H K L D L+++Y K G ++
Sbjct: 138 QDVVYTSRMTLSPMLKLCLHSGYVWASESFHGYACKIGLDGDEFVAGALVNIYLKFGKVK 197
Query: 225 DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITF 276
+ LF E+ +DVV WN M+ Y + G E+A+ L G+ P+ IT
Sbjct: 198 EGKVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAFHSSGLNPNEITL 249
Score = 63.2 bits (152), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 77/158 (48%), Gaps = 6/158 (3%)
Query: 186 SSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMI 245
S L LGK H + + + LISMY KCG L A ++F ++ +D+V+WN+++
Sbjct: 53 SDLMLGKCTHARILTFEENPERFLINNLISMYSKCGSLTYARRVFDKMPDRDLVSWNSIL 112
Query: 246 SGYAQHGKG-----EKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV 300
+ YAQ + ++A LF ++ + + +T +L C H+G V + F
Sbjct: 113 AAYAQSSECVVENIQQAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYV-WASESFHGYA 171
Query: 301 NDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 338
G+ +V++ + GK+ E L ++MP++
Sbjct: 172 CKIGLDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYR 209
Score = 50.8 bits (120), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 85/381 (22%), Positives = 154/381 (40%), Gaps = 74/381 (19%)
Query: 10 NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVV----AAFDFFQRL 65
N++++ ++K G L A+ +FDK+P D+VS+N +L+ +S+ VV AF F R+
Sbjct: 78 NNLISMYSKC-GSLTYARRVFDKMPDRDLVSWNSILAAYAQSSECVVENIQQAFLLF-RI 135
Query: 66 PIKDTASWNTMI----------SGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECG 115
+D + M SG+V + + V+ A+++ Y++ G
Sbjct: 136 LRQDVVYTSRMTLSPMLKLCLHSGYVWASESFHGYACKIGLDGDEFVA-GALVNIYLKFG 194
Query: 116 QLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPN---- 171
++ + LF+ P + VV W M+ Y++ G+ E+ + L G+ PN
Sbjct: 195 KVKEGKVLFEEMPYRDVVLWNLMLKAYLEMGF-----KEEAIDLSSAFHSSGLNPNEITL 249
Query: 172 ------------------------ASSLSSVLLGCSHLSSLQLGKQVHQLV------FKS 201
ASS+S ++ LS Q L+ +S
Sbjct: 250 RLLARISGDDSDAGQVKSFANGNDASSVSEIIFRNKGLSEYLHSGQYSALLKCFADMVES 309
Query: 202 PLCKDTTALTPLISMYCKCGDLE-------DACKLFLEIQRKDVVTWNAMISGYAQHGKG 254
+ D +++ K L A KL L++ + N++I+ Y + K
Sbjct: 310 DVECDQVTFILMLATAVKVDSLALGQQVHCMALKLGLDLM---LTVSNSLINMYCKLRKF 366
Query: 255 EKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTC 314
A +FD M + D I++ +++ GL + F ++ KPD YT
Sbjct: 367 GFARTVFDNMSER----DLISWNSVIAGIAQNGLEVEAVCLFMQLLR---CGLKPDQYT- 418
Query: 315 MVDLLGRAGKLVEAVDLIKKM 335
M +L A L E + L K++
Sbjct: 419 MTSVLKAASSLPEGLSLSKQV 439
>sp|Q9LW32|PP258_ARATH Pentatricopeptide repeat-containing protein At3g26782,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H34 PE=2
SV=1
Length = 659
Score = 393 bits (1009), Expect = e-108, Method: Compositional matrix adjust.
Identities = 219/571 (38%), Positives = 316/571 (55%), Gaps = 82/571 (14%)
Query: 21 GKLKDAQELFDKIPQPDVVSYNIML---------------------------SCILLNSD 53
GKL+DA+++FD+IP+ ++VS+ M+ + L+S
Sbjct: 125 GKLEDARKVFDEIPKRNIVSWTSMIRGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSM 184
Query: 54 DVVAAFDFFQRLPIKD-----------------TASWNTMISGFVQ--KKNMAKARDLFL 94
+V+ R+P K + NT++ + + + +A AR +F
Sbjct: 185 GLVSVISACSRVPAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFD 244
Query: 95 AMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAE 154
+ +K+ VS+++++S Y + G ++A E+F+ VV +
Sbjct: 245 QIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTF------------------- 285
Query: 155 DGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLI 214
NA +LS+VLL SH +L++GK +H V + L D T +I
Sbjct: 286 ----------------NAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSII 329
Query: 215 SMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSI 274
MYCKCG +E A K F ++ K+V +W AMI+GY HG KAL LF M D G++P+ I
Sbjct: 330 DMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYI 389
Query: 275 TFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKK 334
TFV++L AC+HAGL G ++F++M +G+ +HY CMVDLLGRAG L +A DLI++
Sbjct: 390 TFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQR 449
Query: 335 MPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDD 394
M KP I+ +LL+ACR+HK ++LAE + LF L+ +N G Y+ L++IYA +W D
Sbjct: 450 MKMKPDSIIWSSLLAACRIHKNVELAEISVARLFELDSSN-CGYYMLLSHIYADAGRWKD 508
Query: 395 VARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGY 454
V R+R+ MK +VK PG+S +E+ VH F GD HP+ I+E L EL +++ AGY
Sbjct: 509 VERVRMIMKNRGLVKPPGFSLLELNGEVHVFLIGDEEHPQREKIYEFLAELNRKLLEAGY 568
Query: 455 VPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKY 514
V + H V EE KE L HSEKLAIAFG++ G+ + V KNLRVC DCH K
Sbjct: 569 VSNTSSVCHDVDEEEKEMTLRVHSEKLAIAFGIMNTVPGSTVNVVKNLRVCSDCHNVIKL 628
Query: 515 ISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
IS I RE +VRD RFHHFKDG CSCGDYW
Sbjct: 629 ISKIVDREFVVRDAKRFHHFKDGGCSCGDYW 659
Score = 93.6 bits (231), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 106/438 (24%), Positives = 200/438 (45%), Gaps = 68/438 (15%)
Query: 29 LFDK-IPQPDVVSYNIMLSCILLNSDDVVA--AFDFFQRLPIKDTAS--------WNTMI 77
LF++ + + DV S+N +++ + + D A AF ++L + T S +++
Sbjct: 31 LFNRYVDKTDVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSSLF 90
Query: 78 SGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTA 137
F K+ +A F+ + + SA+I Y CG+L+ A ++F P +++V+WT+
Sbjct: 91 DIFSGKQTHQQA---FVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTS 147
Query: 138 MISGYMKFGYVENSWAEDGLKLLRMMI------GLGIRPNASSLSSVLLGCSHLSSLQLG 191
MI GY N A D + L + ++ + ++ L SV+ CS + + L
Sbjct: 148 MIRGYDL-----NGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLT 202
Query: 192 KQVHQLVFKSPLCKDTTALTPLISMYCKCGD--LEDACKLFLEIQRKDVVTWNAMISGYA 249
+ +H V K + + L+ Y K G+ + A K+F +I KD V++N+++S YA
Sbjct: 203 ESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYA 262
Query: 250 QHGKGEKALRLFDKM-KDEGMKPDSITFVALLLACNHAGLVDLGIQYFD----------- 297
Q G +A +F ++ K++ + ++IT +LLA +H+G + +G D
Sbjct: 263 QSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDV 322
Query: 298 ----SMVNDYGIAAKPD---------------HYTCMVDLLGRAGKLVEAVDLIKKM--- 335
S+++ Y + + +T M+ G G +A++L M
Sbjct: 323 IVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDS 382
Query: 336 PFKPQPAIFGTLLSACRVHKRLDLAE---FAAM-NLFNLNPA-NAAGCYVQLANIYAAMK 390
+P F ++L+AC H L + F AM F + P GC V L ++
Sbjct: 383 GVRPNYITFVSVLAACS-HAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQ 441
Query: 391 KWDDVARIRLSMKENNVV 408
K D+ + R+ MK ++++
Sbjct: 442 KAYDLIQ-RMKMKPDSII 458
>sp|Q5G1T1|PP272_ARATH Pentatricopeptide repeat-containing protein At3g49170,
chloroplastic OS=Arabidopsis thaliana GN=EMB2261 PE=2
SV=1
Length = 850
Score = 392 bits (1007), Expect = e-108, Method: Compositional matrix adjust.
Identities = 206/538 (38%), Positives = 313/538 (58%), Gaps = 19/538 (3%)
Query: 21 GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWN--TMIS 78
G + D +++FD++ V+S+ +++ + N + A + F + + N T S
Sbjct: 319 GSVDDCRKVFDRMEDHSVMSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSS 378
Query: 79 GFVQKKNMAKAR-------DLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKS 131
F N++ R F NS +++IS +++ +++ A F+ K+
Sbjct: 379 AFKACGNLSDPRVGKQVLGQAFKRGLASNSSVANSVISMFVKSDRMEDAQRAFESLSEKN 438
Query: 132 VVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLG 191
+V++ + G + N E KLL + + +A + +S+L G +++ S++ G
Sbjct: 439 LVSYNTFLDGTCR-----NLNFEQAFKLLSEITERELGVSAFTFASLLSGVANVGSIRKG 493
Query: 192 KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQH 251
+Q+H V K L + LISMY KCG ++ A ++F ++ ++V++W +MI+G+A+H
Sbjct: 494 EQIHSQVVKLGLSCNQPVCNALISMYSKCGSIDTASRVFNFMENRNVISWTSMITGFAKH 553
Query: 252 GKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDH 311
G + L F++M +EG+KP+ +T+VA+L AC+H GLV G ++F+SM D+ I K +H
Sbjct: 554 GFAIRVLETFNQMIEEGVKPNEVTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEH 613
Query: 312 YTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLN 371
Y CMVDLL RAG L +A + I MPF+ ++ T L ACRVH +L + AA + L+
Sbjct: 614 YACMVDLLCRAGLLTDAFEFINTMPFQADVLVWRTFLGACRVHSNTELGKLAARKILELD 673
Query: 372 PANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRV 431
P N Y+QL+NIYA KW++ +R MKE N+VK G SWIEVG +H+F GD
Sbjct: 674 P-NEPAAYIQLSNIYACAGKWEESTEMRRKMKERNLVKEGGCSWIEVGDKIHKFYVGDTA 732
Query: 432 HPELVSIHEKLKELEKRMKLAGYVPDLEFALHAV----GEEVKEQLLLFHSEKLAIAFGL 487
HP I+++L L +K GYVPD + LH + E KE+LL HSEK+A+AFGL
Sbjct: 733 HPNAHQIYDELDRLITEIKRCGYVPDTDLVLHKLEEENDEAEKERLLYQHSEKIAVAFGL 792
Query: 488 IKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
I P+RVFKNLRVCGDCH A KYIS + REI++RD RFHHFKDG CSC DYW
Sbjct: 793 ISTSKSRPVRVFKNLRVCGDCHNAMKYISTVSGREIVLRDLNRFHHFKDGKCSCNDYW 850
Score = 96.3 bits (238), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 94/399 (23%), Positives = 171/399 (42%), Gaps = 61/399 (15%)
Query: 6 TVNWNSVLAGFAKQR----GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVA--AF 59
+V ++S+L + R GKL A+ L + +PD V YN ++S + D A F
Sbjct: 62 SVTFSSLLKSCIRARDFRLGKLVHAR-LIEFDIEPDSVLYNSLISLYSKSGDSAKAEDVF 120
Query: 60 DFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPE----KNSVSWSAMI------- 108
+ +R +D SW+ M++ + A +F+ E N ++A+I
Sbjct: 121 ETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVPNDYCYTAVIRACSNSD 180
Query: 109 --------------SGYIE------CGQLD----------KAVELFKVAPVKSVVAWTAM 138
+G+ E C +D A ++F +VV WT M
Sbjct: 181 FVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSELNVVTWTLM 240
Query: 139 ISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLV 198
I+ M+ G+ + ++ M+ G + +LSSV C+ L +L LGKQ+H
Sbjct: 241 ITRCMQMGF-----PREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGKQLHSWA 295
Query: 199 FKSPLCKDTTALTPLISMYCKC---GDLEDACKLFLEIQRKDVVTWNAMISGYAQHGK-G 254
+S L D L+ MY KC G ++D K+F ++ V++W A+I+GY ++
Sbjct: 296 IRSGLVDDVEC--SLVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTALITGYMKNCNLA 353
Query: 255 EKALRLFDKMKDEG-MKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYT 313
+A+ LF +M +G ++P+ TF + AC + +G Q G+A+
Sbjct: 354 TEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRVGKQVLGQAFK-RGLASNSSVAN 412
Query: 314 CMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACR 352
++ + ++ ++ +A + + K + L CR
Sbjct: 413 SVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCR 451
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 79/289 (27%), Positives = 135/289 (46%), Gaps = 37/289 (12%)
Query: 32 KIP---QPDVVS-YNIMLSCIL--LNSDDV---VAAFDFFQRLPIK--DTASWNTMISGF 80
K+P QP V + N+ IL LN+ D+ V+A D R I+ D+ ++++++
Sbjct: 13 KLPIKSQPSVSNRINVADRLILRHLNAGDLRGAVSALDLMARDGIRPMDSVTFSSLL--- 69
Query: 81 VQKKNMAKARDLFLAM----------PEKNSVSWSAMISGYIECGQLDKAVELFKVAPV- 129
K+ +ARD L E +SV ++++IS Y + G KA ++F+
Sbjct: 70 ---KSCIRARDFRLGKLVHARLIEFDIEPDSVLYNSLISLYSKSGDSAKAEDVFETMRRF 126
Query: 130 --KSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSS 187
+ VV+W+AM++ Y N D +K+ + LG+ PN ++V+ CS+
Sbjct: 127 GKRDVVSWSAMMACYGN-----NGRELDAIKVFVEFLELGLVPNDYCYTAVIRACSNSDF 181
Query: 188 LQLGKQVHQLVFKSP-LCKDTTALTPLISMYCKC-GDLEDACKLFLEIQRKDVVTWNAMI 245
+ +G+ + K+ D LI M+ K E+A K+F ++ +VVTW MI
Sbjct: 182 VGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSELNVVTWTLMI 241
Query: 246 SGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ 294
+ Q G +A+R F M G + D T ++ AC + LG Q
Sbjct: 242 TRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGKQ 290
>sp|Q9LFL5|PP390_ARATH Pentatricopeptide repeat-containing protein At5g16860
OS=Arabidopsis thaliana GN=PCMP-H92 PE=2 SV=1
Length = 850
Score = 392 bits (1007), Expect = e-108, Method: Compositional matrix adjust.
Identities = 215/581 (37%), Positives = 327/581 (56%), Gaps = 64/581 (11%)
Query: 21 GKLKDAQELFDKIPQPDVVSYNIMLSCI--LLNSDDVVAAFDFFQRLPIK-DTASWNTMI 77
G + +A +F + DVVS+N M++ + +D V F+ Q IK D +W+ I
Sbjct: 278 GMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAI 337
Query: 78 SGFVQK----KNMAKARDLFLAMPEKNSVSWSAMISG----------------------- 110
SG+ Q+ + + R + + + N V+ +++SG
Sbjct: 338 SGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPID 397
Query: 111 -------------------YIECGQLDKAVELF-KVAP-VKSVVAWTAMISGYMKFGYVE 149
Y +C ++D A +F ++P + VV WT MI GY + G
Sbjct: 398 LRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGD-- 455
Query: 150 NSWAEDGLKLLRMMI--GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDT 207
A L+LL M RPNA ++S L+ C+ L++L++GKQ+H ++ ++
Sbjct: 456 ---ANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALRIGKQIHAYALRNQ--QNA 510
Query: 208 TAL---TPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKM 264
L LI MY KCG + DA +F + K+ VTW ++++GY HG GE+AL +FD+M
Sbjct: 511 VPLFVSNCLIDMYAKCGSISDARLVFDNMMAKNEVTWTSLMTGYGMHGYGEEALGIFDEM 570
Query: 265 KDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGK 324
+ G K D +T + +L AC+H+G++D G++YF+ M +G++ P+HY C+VDLLGRAG+
Sbjct: 571 RRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTVFGVSPGPEHYACLVDLLGRAGR 630
Query: 325 LVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLAN 384
L A+ LI++MP +P P ++ LS CR+H +++L E+AA + L +N G Y L+N
Sbjct: 631 LNAALRLIEEMPMEPPPVVWVAFLSCCRIHGKVELGEYAAEKITEL-ASNHDGSYTLLSN 689
Query: 385 IYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKE 444
+YA +W DV RIR M+ V K PG SW+E F GD+ HP I++ L +
Sbjct: 690 LYANAGRWKDVTRIRSLMRHKGVKKRPGCSWVEGIKGTTTFFVGDKTHPHAKEIYQVLLD 749
Query: 445 LEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRV 504
+R+K GYVP+ FALH V +E K+ LL HSEKLA+A+G++ P G IR+ KNLRV
Sbjct: 750 HMQRIKDIGYVPETGFALHDVDDEEKDDLLFEHSEKLALAYGILTTPQGAAIRITKNLRV 809
Query: 505 CGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
CGDCH A Y+S I +II+RD++RFHHFK+G+CSC YW
Sbjct: 810 CGDCHTAFTYMSRIIDHDIILRDSSRFHHFKNGSCSCKGYW 850
Score = 156 bits (394), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 106/351 (30%), Positives = 175/351 (49%), Gaps = 29/351 (8%)
Query: 1 MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIP-----QPDVVSY-NIMLSCILLNSDD 54
M+V V+WNS++ +AK GK K A E+F ++ +PD ++ N++ C L +
Sbjct: 188 MSVWDVVSWNSIIESYAKL-GKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCASLGTHS 246
Query: 55 VVAAFDFFQRLP--IKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYI 112
+ F I++ N ++ + + M +A +F M K+ VSW+AM++GY
Sbjct: 247 LGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYS 306
Query: 113 ECGQLDKAVELFKVAPVK----SVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGI 168
+ G+ + AV LF+ + VV W+A ISGY + G + L + R M+ GI
Sbjct: 307 QIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGL-----GYEALGVCRQMLSSGI 361
Query: 169 RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPL-------CKDTTALTPLISMYCKCG 221
+PN +L SVL GC+ + +L GK++H K P+ + + LI MY KC
Sbjct: 362 KPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCK 421
Query: 222 DLEDACKLF--LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEG--MKPDSITFV 277
++ A +F L + +DVVTW MI GY+QHG KAL L +M +E +P++ T
Sbjct: 422 KVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTIS 481
Query: 278 ALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEA 328
L+AC + +G Q + + A C++D+ + G + +A
Sbjct: 482 CALVACASLAALRIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSISDA 532
Score = 115 bits (287), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 65/185 (35%), Positives = 105/185 (56%), Gaps = 6/185 (3%)
Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLL-RMM 163
+A+++ Y C L A ++F V VV+W ++I Y K G + L++ RM
Sbjct: 166 NALVAMYSRCRSLSDARKVFDEMSVWDVVSWNSIIESYAKLGK-----PKVALEMFSRMT 220
Query: 164 IGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDL 223
G RP+ +L +VL C+ L + LGKQ+H S + ++ L+ MY KCG +
Sbjct: 221 NEFGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMM 280
Query: 224 EDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC 283
++A +F + KDVV+WNAM++GY+Q G+ E A+RLF+KM++E +K D +T+ A +
Sbjct: 281 DEANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGY 340
Query: 284 NHAGL 288
GL
Sbjct: 341 AQRGL 345
Score = 110 bits (275), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 75/242 (30%), Positives = 113/242 (46%), Gaps = 19/242 (7%)
Query: 105 SAMISGYIECGQLDKAVELFKVAPVK--SVVAWTAMISGYMKFGYVENSWAEDGLKLLRM 162
S +IS YI G L AV L + P V W ++I Y +N A L L +
Sbjct: 63 SHLISTYISVGCLSHAVSLLRRFPPSDAGVYHWNSLIRSYG-----DNGCANKCLYLFGL 117
Query: 163 MIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGD 222
M L P+ + V C +SS++ G+ H L + + L++MY +C
Sbjct: 118 MHSLSWTPDNYTFPFVFKACGEISSVRCGESAHALSLVTGFISNVFVGNALVAMYSRCRS 177
Query: 223 LEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE-GMKPDSITFVALLL 281
L DA K+F E+ DVV+WN++I YA+ GK + AL +F +M +E G +PD+IT V +L
Sbjct: 178 LSDARKVFDEMSVWDVVSWNSIIESYAKLGKPKVALEMFSRMTNEFGCRPDNITLVNVLP 237
Query: 282 ACNHAGLVDLGIQYF-----DSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 336
C G LG Q M+ + + C+VD+ + G + EA + M
Sbjct: 238 PCASLGTHSLGKQLHCFAVTSEMIQNMFVG------NCLVDMYAKCGMMDEANTVFSNMS 291
Query: 337 FK 338
K
Sbjct: 292 VK 293
Score = 56.2 bits (134), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 75/328 (22%), Positives = 136/328 (41%), Gaps = 55/328 (16%)
Query: 10 NSVLAGFAKQRGKLKDAQELFDKIP--QPDVVSYNIMLSCILLNSDDVVAA---FDFF-- 62
N ++ +AK + K+ A+ +FD + + DVV++ +M+ + D A + F
Sbjct: 411 NQLIDMYAKCK-KVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEE 469
Query: 63 --QRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSW---SAMISGYIECGQL 117
Q P T S + + + K + ++N+V + +I Y +CG +
Sbjct: 470 DCQTRPNAFTISCALVACASLAALRIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSI 529
Query: 118 DKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSS 177
A +F K+ V WT++++GY GY E+ L + M +G + + +L
Sbjct: 530 SDARLVFDNMMAKNEVTWTSLMTGYGMHGY-----GEEALGIFDEMRRIGFKLDGVTLLV 584
Query: 178 VLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKD 237
VL CSH + G + + K ++P G AC
Sbjct: 585 VLYACSHSGMIDQGMEYFNRM------KTVFGVSP--------GPEHYAC---------- 620
Query: 238 VVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFD 297
++ + G+ ALRL ++M M+P + +VA L C G V+LG +Y
Sbjct: 621 ------LVDLLGRAGRLNAALRLIEEMP---MEPPPVVWVAFLSCCRIHGKVELG-EYAA 670
Query: 298 SMVNDYGIAAKPD-HYTCMVDLLGRAGK 324
+ + +A+ D YT + +L AG+
Sbjct: 671 EKITE--LASNHDGSYTLLSNLYANAGR 696
>sp|A8MQA3|PP330_ARATH Pentatricopeptide repeat-containing protein At4g21065
OS=Arabidopsis thaliana GN=PCMP-H28 PE=2 SV=2
Length = 595
Score = 392 bits (1007), Expect = e-108, Method: Compositional matrix adjust.
Identities = 211/532 (39%), Positives = 316/532 (59%), Gaps = 20/532 (3%)
Query: 26 AQELFDKIPQP-DVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKK 84
A ++F KI +P +V +N ++ + ++AF ++ + + +T F+ K
Sbjct: 72 AHKVFSKIEKPINVFIWNTLIRG-YAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKA 130
Query: 85 NMAKARDLFLAMPEKNSVSWS----------AMISGYIECGQLDKAVELFKVAPVKSVVA 134
A D+ L + V S +++ Y CG + A ++F P K +VA
Sbjct: 131 VTTMA-DVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVA 189
Query: 135 WTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQV 194
W ++I+G+ EN E+ L L M GI+P+ ++ S+L C+ + +L LGK+V
Sbjct: 190 WNSVINGF-----AENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRV 244
Query: 195 HQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKG 254
H + K L ++ + L+ +Y +CG +E+A LF E+ K+ V+W ++I G A +G G
Sbjct: 245 HVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFG 304
Query: 255 EKALRLFDKMKD-EGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYT 313
++A+ LF M+ EG+ P ITFV +L AC+H G+V G +YF M +Y I + +H+
Sbjct: 305 KEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFG 364
Query: 314 CMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPA 373
CMVDLL RAG++ +A + IK MP +P I+ TLL AC VH DLAEFA + + L P
Sbjct: 365 CMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLAEFARIQILQLEP- 423
Query: 374 NAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHP 433
N +G YV L+N+YA+ ++W DV +IR M + V K+PG+S +EVG VHEF GD+ HP
Sbjct: 424 NHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEVGNRVHEFLMGDKSHP 483
Query: 434 ELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLG 493
+ +I+ KLKE+ R++ GYVP + V EE KE +++HSEK+AIAF LI P
Sbjct: 484 QSDAIYAKLKEMTGRLRSEGYVPQISNVYVDVEEEEKENAVVYHSEKIAIAFMLISTPER 543
Query: 494 TPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
+PI V KNLRVC DCH A K +S + REI+VRD +RFHHFK+G+CSC DYW
Sbjct: 544 SPITVVKNLRVCADCHLAIKLVSKVYNREIVVRDRSRFHHFKNGSCSCQDYW 595
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 68/133 (51%), Gaps = 10/133 (7%)
Query: 1 MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
M K V WNSV+ GFA + GK ++A L+ ++ + + LL++ + A
Sbjct: 182 MPEKDLVAWNSVINGFA-ENGKPEEALALYTEMNSKGIKPDGFTIVS-LLSACAKIGALT 239
Query: 61 FFQRLPI--------KDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYI 112
+R+ + ++ S N ++ + + + +A+ LF M +KNSVSW+++I G
Sbjct: 240 LGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLA 299
Query: 113 ECGQLDKAVELFK 125
G +A+ELFK
Sbjct: 300 VNGFGKEAIELFK 312
>sp|O23337|PP311_ARATH Pentatricopeptide repeat-containing protein At4g14820
OS=Arabidopsis thaliana GN=PCMP-H3 PE=2 SV=1
Length = 722
Score = 391 bits (1005), Expect = e-108, Method: Compositional matrix adjust.
Identities = 217/559 (38%), Positives = 329/559 (58%), Gaps = 22/559 (3%)
Query: 1 MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILL------NSDD 54
M+ + V WN+++ + + G + +A +LF+++ +V+ ++L I+ N
Sbjct: 172 MSHRDVVTWNTMIERYCR-FGLVDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRY 230
Query: 55 VVAAFDFFQRLPIK-DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE 113
A ++F ++ DT +++ + M AR+ F M +N +AM+SGY +
Sbjct: 231 NRAIYEFLIENDVRMDTHLLTALVTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSK 290
Query: 114 CGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNAS 173
CG+LD A +F K +V WT MIS Y VE+ + ++ L++ M GI+P+
Sbjct: 291 CGRLDDAQVIFDQTEKKDLVCWTTMISAY-----VESDYPQEALRVFEEMCCSGIKPDVV 345
Query: 174 SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI 233
S+ SV+ C++L L K VH + + L + + LI+MY KCG L+ +F ++
Sbjct: 346 SMFSVISACANLGILDKAKWVHSCIHVNGLESELSINNALINMYAKCGGLDATRDVFEKM 405
Query: 234 QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGI 293
R++VV+W++MI+ + HG+ AL LF +MK E ++P+ +TFV +L C+H+GLV+ G
Sbjct: 406 PRRNVVSWSSMINALSMHGEASDALSLFARMKQENVEPNEVTFVGVLYGCSHSGLVEEGK 465
Query: 294 QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRV 353
+ F SM ++Y I K +HY CMVDL GRA L EA+++I+ MP I+G+L+SACR+
Sbjct: 466 KIFASMTDEYNITPKLEHYGCMVDLFGRANLLREALEVIESMPVASNVVIWGSLMSACRI 525
Query: 354 HKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGY 413
H L+L +FAA + L P + G V ++NIYA ++W+DV IR M+E NV K G
Sbjct: 526 HGELELGKFAAKRILELEP-DHDGALVLMSNIYAREQRWEDVRNIRRVMEEKNVFKEKGL 584
Query: 414 SWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQL 473
S I+ HEF GD+ H + I+ KL E+ ++KLAGYVPD L V EE K+ L
Sbjct: 585 SRIDQNGKSHEFLIGDKRHKQSNEIYAKLDEVVSKLKLAGYVPDCGSVLVDVEEEEKKDL 644
Query: 474 LLFHSEKLAIAFGLI-------KVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVR 526
+L+HSEKLA+ FGL+ K G IR+ KNLRVC DCH K +S + +REIIVR
Sbjct: 645 VLWHSEKLALCFGLMNEEKEEEKDSCGV-IRIVKNLRVCEDCHLFFKLVSKVYEREIIVR 703
Query: 527 DTTRFHHFKDGTCSCGDYW 545
D TRFH +K+G CSC DYW
Sbjct: 704 DRTRFHCYKNGLCSCRDYW 722
Score = 119 bits (297), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 93/392 (23%), Positives = 177/392 (45%), Gaps = 56/392 (14%)
Query: 26 AQELFDKIPQP-DVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKK 84
A +F IP P + + +N L L S + A F+QR I+ S K
Sbjct: 63 ALNVFSSIPSPPESIVFNPFLR-DLSRSSEPRATILFYQR--IRHVGGRLDQFSFLPILK 119
Query: 85 NMAKARDLFLAMPEKNSVSW-----------SAMISGYIECGQLDKAVELFKVAPVKSVV 133
++K LF M E + V++ + + Y CG+++ A +F + VV
Sbjct: 120 AVSKVSALFEGM-ELHGVAFKIATLCDPFVETGFMDMYASCGRINYARNVFDEMSHRDVV 178
Query: 134 AWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQ 193
W MI Y +FG V ++ KL M + P+ L +++ C +++ +
Sbjct: 179 TWNTMIERYCRFGLV-----DEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRA 233
Query: 194 VHQLVFKSPLCKDTTALTPLISMYC-------------------------------KCGD 222
+++ + ++ + DT LT L++MY KCG
Sbjct: 234 IYEFLIENDVRMDTHLLTALVTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSKCGR 293
Query: 223 LEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA 282
L+DA +F + ++KD+V W MIS Y + ++ALR+F++M G+KPD ++ +++ A
Sbjct: 294 LDDAQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVISA 353
Query: 283 CNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPA 342
C + G++D ++ S ++ G+ ++ ++++ + G L D+ +KMP +
Sbjct: 354 CANLGILDKA-KWVHSCIHVNGLESELSINNALINMYAKCGGLDATRDVFEKMP-RRNVV 411
Query: 343 IFGTLLSACRVHKRLD--LAEFAAMNLFNLNP 372
+ ++++A +H L+ FA M N+ P
Sbjct: 412 SWSSMINALSMHGEASDALSLFARMKQENVEP 443
>sp|Q9MAT2|PPR10_ARATH Pentatricopeptide repeat-containing protein At1g04840
OS=Arabidopsis thaliana GN=PCMP-H64 PE=2 SV=1
Length = 665
Score = 389 bits (999), Expect = e-107, Method: Compositional matrix adjust.
Identities = 196/492 (39%), Positives = 297/492 (60%), Gaps = 10/492 (2%)
Query: 58 AFDFFQRLP--IKDTAS--WNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIE 113
AF F+ P IK + WN +I+G+ + K+M A LF +MPE+NS SWS +I GY++
Sbjct: 180 AFQVFEESPDRIKKESILIWNVLINGYCRAKDMHMATTLFRSMPERNSGSWSTLIKGYVD 239
Query: 114 CGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNAS 173
G+L++A +LF++ P K+VV+WT +I+G+ + G E + + M+ G++PN
Sbjct: 240 SGELNRAKQLFELMPEKNVVSWTTLINGFSQTGDYETA-----ISTYFEMLEKGLKPNEY 294
Query: 174 SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI 233
++++VL CS +L G ++H + + + D T L+ MY KCG+L+ A +F +
Sbjct: 295 TIAAVLSACSKSGALGSGIRIHGYILDNGIKLDRAIGTALVDMYAKCGELDCAATVFSNM 354
Query: 234 QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGI 293
KD+++W AMI G+A HG+ +A++ F +M G KPD + F+A+L AC ++ VDLG+
Sbjct: 355 NHKDILSWTAMIQGWAVHGRFHQAIQCFRQMMYSGEKPDEVVFLAVLTACLNSSEVDLGL 414
Query: 294 QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRV 353
+FDSM DY I HY +VDLLGRAGKL EA +L++ MP P + L AC+
Sbjct: 415 NFFDSMRLDYAIEPTLKHYVLVVDLLGRAGKLNEAHELVENMPINPDLTTWAALYRACKA 474
Query: 354 HKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGY 413
HK AE + NL L+P G Y+ L +A+ DV + RLS+++ + G+
Sbjct: 475 HKGYRRAESVSQNLLELDP-ELCGSYIFLDKTHASKGNIQDVEKRRLSLQKRIKERSLGW 533
Query: 414 SWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQL 473
S+IE+ +++F +GD H I KL E+ GY P ++++H + EE KE +
Sbjct: 534 SYIELDGQLNKFSAGDYSHKLTQEIGLKLDEIISLAIQKGYNPGADWSIHDIEEEEKENV 593
Query: 474 LLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHH 533
HSEKLA+ G ++ GT IR+ KNLR+CGDCH KY+S I +R+I++RD +FHH
Sbjct: 594 TGIHSEKLALTLGFLRTAPGTTIRIIKNLRICGDCHSLMKYVSKISQRDILLRDARQFHH 653
Query: 534 FKDGTCSCGDYW 545
FKDG CSCGDYW
Sbjct: 654 FKDGRCSCGDYW 665
Score = 69.3 bits (168), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 63/279 (22%), Positives = 124/279 (44%), Gaps = 26/279 (9%)
Query: 84 KNMAKARDLFLAMPEKNSVSWSAMISGYIECGQL----DKAVELFKVAPVKSVVAWTAMI 139
K+ A R + + + +S S + + + C L D ++ +F+ + ++ A+I
Sbjct: 40 KDTASLRHVHAQILRRGVLS-SRVAAQLVSCSSLLKSPDYSLSIFRNSEERNPFVLNALI 98
Query: 140 SGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVF 199
G EN+ E ++ +M+ LG++P+ + VL S L LG+ +H
Sbjct: 99 RGL-----TENARFESSVRHFILMLRLGVKPDRLTFPFVLKSNSKLGFRWLGRALHAATL 153
Query: 200 KSPLCKDTTALTPLISMYCKCGDLEDACKLFLE----IQRKDVVTWNAMISGYAQHGKGE 255
K+ + D+ L+ MY K G L+ A ++F E I+++ ++ WN +I+GY +
Sbjct: 154 KNFVDCDSFVRLSLVDMYAKTGQLKHAFQVFEESPDRIKKESILIWNVLINGYCRAKDMH 213
Query: 256 KALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCM 315
A LF M + +S ++ L+ +G ++ Q F+ M ++ +T +
Sbjct: 214 MATTLFRSMPER----NSGSWSTLIKGYVDSGELNRAKQLFELMPEKNVVS-----WTTL 264
Query: 316 VDLLGRAGKLVEAVDLIKKM---PFKPQPAIFGTLLSAC 351
++ + G A+ +M KP +LSAC
Sbjct: 265 INGFSQTGDYETAISTYFEMLEKGLKPNEYTIAAVLSAC 303
>sp|Q0WQW5|PPR85_ARATH Pentatricopeptide repeat-containing protein At1g59720,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H51 PE=2
SV=2
Length = 638
Score = 388 bits (996), Expect = e-107, Method: Compositional matrix adjust.
Identities = 198/455 (43%), Positives = 280/455 (61%), Gaps = 20/455 (4%)
Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI 164
+ +I Y CG LD A ++F P +S+V+W +MI ++FG +++ L+L R M
Sbjct: 190 NGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRFGEYDSA-----LQLFREM- 243
Query: 165 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKS---PLCKDTTALTPLISMYCKCG 221
P+ ++ SVL C+ L SL LG H + + + D LI MYCKCG
Sbjct: 244 QRSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCG 303
Query: 222 DLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKD--EGMKPDSITFVAL 279
L A ++F +Q++D+ +WNAMI G+A HG+ E+A+ FD+M D E ++P+S+TFV L
Sbjct: 304 SLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMVDKRENVRPNSVTFVGL 363
Query: 280 LLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKP 339
L+ACNH G V+ G QYFD MV DY I +HY C+VDL+ RAG + EA+D++ MP KP
Sbjct: 364 LIACNHRGFVNKGRQYFDMMVRDYCIEPALEHYGCIVDLIARAGYITEAIDMVMSMPMKP 423
Query: 340 QPAIFGTLLSAC-RVHKRLDLAEFAAMNLFNL------NPANAAGCYVQLANIYAAMKKW 392
I+ +LL AC + ++L+E A N+ + N +G YV L+ +YA+ +W
Sbjct: 424 DAVIWRSLLDACCKKGASVELSEEIARNIIGTKEDNESSNGNCSGAYVLLSRVYASASRW 483
Query: 393 DDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLA 452
+DV +R M E+ + K PG S IE+ + HEF +GD HP+ I+++LK ++ R++
Sbjct: 484 NDVGIVRKLMSEHGIRKEPGCSSIEINGISHEFFAGDTSHPQTKQIYQQLKVIDDRLRSI 543
Query: 453 GYVPDLEFA--LHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHR 510
GY+PD A + A + KE L HSE+LAIAFGLI +P TPIR+FKNLRVC DCH
Sbjct: 544 GYLPDRSQAPLVDATNDGSKEYSLRLHSERLAIAFGLINLPPQTPIRIFKNLRVCNDCHE 603
Query: 511 ATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
TK IS + EIIVRD RFHHFKDG+CSC DYW
Sbjct: 604 VTKLISKVFNTEIIVRDRVRFHHFKDGSCSCLDYW 638
Score = 77.4 bits (189), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 83/177 (46%), Gaps = 6/177 (3%)
Query: 117 LDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLG-IRPNASSL 175
++ A +F S W +I + S E+ L R M+ G P+ +
Sbjct: 99 VNYAFRVFDSIENHSSFMWNTLIRACAH----DVSRKEEAFMLYRKMLERGESSPDKHTF 154
Query: 176 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR 235
VL C+++ GKQVH + K D LI +Y CG L+ A K+F E+
Sbjct: 155 PFVLKACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPE 214
Query: 236 KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 292
+ +V+WN+MI + G+ + AL+LF +M+ +PD T ++L AC G + LG
Sbjct: 215 RSLVSWNSMIDALVRFGEYDSALQLFREMQ-RSFEPDGYTMQSVLSACAGLGSLSLG 270
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/251 (21%), Positives = 114/251 (45%), Gaps = 30/251 (11%)
Query: 21 GKLKDAQELFDKIPQPDVVSYNIMLSCILL--NSDDVVAAFDFFQRLPIKDTASWNTMIS 78
G L A+++FD++P+ +VS+N M+ ++ D + F QR D + +++S
Sbjct: 200 GCLDLARKVFDEMPERSLVSWNSMIDALVRFGEYDSALQLFREMQRSFEPDGYTMQSVLS 259
Query: 79 ----------GFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAP 128
G + + D+ +AM + + +++I Y +CG L A ++F+
Sbjct: 260 ACAGLGSLSLGTWAHAFLLRKCDVDVAM---DVLVKNSLIEMYCKCGSLRMAEQVFQGMQ 316
Query: 129 VKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGL--GIRPNASSLSSVLLGCSHLS 186
+ + +W AMI G+ G AE+ + M+ +RPN+ + +L+ C+H
Sbjct: 317 KRDLASWNAMILGFATHGR-----AEEAMNFFDRMVDKRENVRPNSVTFVGLLIACNHRG 371
Query: 187 SLQLGKQVHQLVFK----SPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK-DVVTW 241
+ G+Q ++ + P + + LI+ + G + +A + + + K D V W
Sbjct: 372 FVNKGRQYFDMMVRDYCIEPALEHYGCIVDLIA---RAGYITEAIDMVMSMPMKPDAVIW 428
Query: 242 NAMISGYAQHG 252
+++ + G
Sbjct: 429 RSLLDACCKKG 439
>sp|Q9FND7|PP410_ARATH Putative pentatricopeptide repeat-containing protein At5g40405
OS=Arabidopsis thaliana GN=PCMP-H14 PE=3 SV=1
Length = 612
Score = 385 bits (990), Expect = e-106, Method: Compositional matrix adjust.
Identities = 193/470 (41%), Positives = 287/470 (61%), Gaps = 6/470 (1%)
Query: 76 MISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAW 135
+IS + + + +F ++P + V +AM++ CG + A +LF+ P + +AW
Sbjct: 149 LISLYAELGCLDSCHKVFNSIPCPDFVCRTAMVTACARCGDVVFARKLFEGMPERDPIAW 208
Query: 136 TAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVH 195
AMISGY + G + + L + +M G++ N ++ SVL C+ L +L G+ H
Sbjct: 209 NAMISGYAQVGE-----SREALNVFHLMQLEGVKVNGVAMISVLSACTQLGALDQGRWAH 263
Query: 196 QLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGE 255
+ ++ + T L+ +Y KCGD+E A ++F ++ K+V TW++ ++G A +G GE
Sbjct: 264 SYIERNKIKITVRLATTLVDLYAKCGDMEKAMEVFWGMEEKNVYTWSSALNGLAMNGFGE 323
Query: 256 KALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCM 315
K L LF MK +G+ P+++TFV++L C+ G VD G ++FDSM N++GI + +HY C+
Sbjct: 324 KCLELFSLMKQDGVTPNAVTFVSVLRGCSVVGFVDEGQRHFDSMRNEFGIEPQLEHYGCL 383
Query: 316 VDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANA 375
VDL RAG+L +AV +I++MP KP A++ +LL A R++K L+L A+ + L AN
Sbjct: 384 VDLYARAGRLEDAVSIIQQMPMKPHAAVWSSLLHASRMYKNLELGVLASKKMLELETAN- 442
Query: 376 AGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPEL 435
G YV L+NIYA WD+V+ +R SMK V K PG S +EV VHEF GD+ HP+
Sbjct: 443 HGAYVLLSNIYADSNDWDNVSHVRQSMKSKGVRKQPGCSVMEVNGEVHEFFVGDKSHPKY 502
Query: 436 VSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTP 495
I K++ +R++LAGY D + + EE KE L HSEK AIAFG++ + P
Sbjct: 503 TQIDAVWKDISRRLRLAGYKADTTPVMFDIDEEEKEDALCLHSEKAAIAFGIMSLKEDVP 562
Query: 496 IRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
IR+ KNLRVCGDCH+ + IS I REIIVRD RFHHFKDG CSC +W
Sbjct: 563 IRIVKNLRVCGDCHQVSMMISKIFNREIIVRDRNRFHHFKDGHCSCNGFW 612
Score = 87.4 bits (215), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 88/365 (24%), Positives = 148/365 (40%), Gaps = 82/365 (22%)
Query: 117 LDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLG--IRPNASS 174
LD A ++ + ++ A +MI + K E S+ R ++ G ++P+ +
Sbjct: 56 LDYANQILDRSEKPTLFALNSMIRAHCKSPVPEKSF-----DFYRRILSSGNDLKPDNYT 110
Query: 175 LSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMY----------------- 217
++ ++ C+ L + G QVH + + D T LIS+Y
Sbjct: 111 VNFLVQACTGLRMRETGLQVHGMTIRRGFDNDPHVQTGLISLYAELGCLDSCHKVFNSIP 170
Query: 218 --------------CKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDK 263
+CGD+ A KLF + +D + WNAMISGYAQ G+ +AL +F
Sbjct: 171 CPDFVCRTAMVTACARCGDVVFARKLFEGMPERDPIAWNAMISGYAQVGESREALNVFHL 230
Query: 264 MKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAG 323
M+ EG+K + + +++L AC G +D G ++ S + I T +VDL + G
Sbjct: 231 MQLEGVKVNGVAMISVLSACTQLGALDQG-RWAHSYIERNKIKITVRLATTLVDLYAKCG 289
Query: 324 ----------------------------------KLVEAVDLIKKMPFKPQPAIFGTLLS 349
K +E L+K+ P F ++L
Sbjct: 290 DMEKAMEVFWGMEEKNVYTWSSALNGLAMNGFGEKCLELFSLMKQDGVTPNAVTFVSVLR 349
Query: 350 ACRVHKRLDLAE--FAAM-NLFNLNPA-NAAGCYVQLANIYAAMKKWDDVARI--RLSMK 403
C V +D + F +M N F + P GC L ++YA + +D I ++ MK
Sbjct: 350 GCSVVGFVDEGQRHFDSMRNEFGIEPQLEHYGC---LVDLYARAGRLEDAVSIIQQMPMK 406
Query: 404 ENNVV 408
+ V
Sbjct: 407 PHAAV 411
Score = 83.6 bits (205), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 87/330 (26%), Positives = 134/330 (40%), Gaps = 74/330 (22%)
Query: 21 GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGF 80
G L ++F+ IP PD V M++ DVV A F+ +P +D +WN MISG+
Sbjct: 157 GCLDSCHKVFNSIPCPDFVCRTAMVTACA-RCGDVVFARKLFEGMPERDPIAWNAMISGY 215
Query: 81 VQKKNMAKARDLFLAMP-EKNSVSWSAMIS------------------GYIE-------- 113
Q +A ++F M E V+ AMIS YIE
Sbjct: 216 AQVGESREALNVFHLMQLEGVKVNGVAMISVLSACTQLGALDQGRWAHSYIERNKIKITV 275
Query: 114 ------------CGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLR 161
CG ++KA+E+F K+V W++ ++ G N + E L+L
Sbjct: 276 RLATTLVDLYAKCGDMEKAMEVFWGMEEKNVYTWSSALN-----GLAMNGFGEKCLELFS 330
Query: 162 MMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTP-------LI 214
+M G+ PNA + SVL GCS + + G Q F S ++ + P L+
Sbjct: 331 LMKQDGVTPNAVTFVSVLRGCSVVGFVDEG----QRHFDS--MRNEFGIEPQLEHYGCLV 384
Query: 215 SMYCKCGDLEDACKLFLEIQRK-DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDS 273
+Y + G LEDA + ++ K W++++ + E + KM +
Sbjct: 385 DLYARAGRLEDAVSIIQQMPMKPHAAVWSSLLHASRMYKNLELGVLASKKMLE------- 437
Query: 274 ITFVALLLACNHAGLVDLGIQYFDSMVNDY 303
L NH V L Y DS ND+
Sbjct: 438 ------LETANHGAYVLLSNIYADS--NDW 459
>sp|Q9FFG8|PP417_ARATH Pentatricopeptide repeat-containing protein At5g44230
OS=Arabidopsis thaliana GN=PCMP-H17 PE=2 SV=1
Length = 657
Score = 384 bits (987), Expect = e-106, Method: Compositional matrix adjust.
Identities = 203/549 (36%), Positives = 320/549 (58%), Gaps = 20/549 (3%)
Query: 9 WNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCIL--------LNSDDVVAAFD 60
W +V+ G+A + GK +A ++ + + ++ + S +L LN A
Sbjct: 117 WTAVIRGYAIE-GKFDEAIAMYGCMRKEEITPVSFTFSALLKACGTMKDLNLGRQFHAQT 175
Query: 61 FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
F R NTMI +V+ +++ AR +F MPE++ +SW+ +I+ Y G ++ A
Sbjct: 176 FRLR-GFCFVYVGNTMIDMYVKCESIDCARKVFDEMPERDVISWTELIAAYARVGNMECA 234
Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLL 180
ELF+ P K +VAWTAM++G+ +N+ ++ L+ M GIR + +++ +
Sbjct: 235 AELFESLPTKDMVAWTAMVTGF-----AQNAKPQEALEYFDRMEKSGIRADEVTVAGYIS 289
Query: 181 GCSHLSSLQLGKQVHQLVFKSPLCKDTTAL--TPLISMYCKCGDLEDACKLFLEIQRKDV 238
C+ L + + + Q+ KS + + LI MY KCG++E+A +F+ + K+V
Sbjct: 290 ACAQLGASKYADRAVQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFMSMNNKNV 349
Query: 239 VTWNAMISGYAQHGKGEKALRLFDKMKDEG-MKPDSITFVALLLACNHAGLVDLGIQYFD 297
T+++MI G A HG+ ++AL LF M + +KP+++TFV L+AC+H+GLVD G Q FD
Sbjct: 350 FTYSSMILGLATHGRAQEALHLFHYMVTQTEIKPNTVTFVGALMACSHSGLVDQGRQVFD 409
Query: 298 SMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRL 357
SM +G+ DHYTCMVDLLGR G+L EA++LIK M +P ++G LL ACR+H
Sbjct: 410 SMYQTFGVQPTRDHYTCMVDLLGRTGRLQEALELIKTMSVEPHGGVWGALLGACRIHNNP 469
Query: 358 DLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSW-I 416
++AE AA +LF L P + G Y+ L+N+YA+ W V R+R +KE + K P SW +
Sbjct: 470 EIAEIAAEHLFELEP-DIIGNYILLSNVYASAGDWGGVLRVRKLIKEKGLKKTPAVSWVV 528
Query: 417 EVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLF 476
+ +H+F G+ HP I +KL+EL +R+ + GY PDL + V + K +L+
Sbjct: 529 DKNGQMHKFFPGNLNHPMSNKIQDKLEELVERLTVLGYQPDLSSVPYDVSDNAKRLILIQ 588
Query: 477 HSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKD 536
H+EKLA+AF L+ + I + KNLR+C DCH+ + S + + II+RD RFHHF+
Sbjct: 589 HTEKLALAFSLLTTNRDSTITIMKNLRMCLDCHKFMRLASEVTGKVIIMRDNMRFHHFRS 648
Query: 537 GTCSCGDYW 545
G CSCGD+W
Sbjct: 649 GDCSCGDFW 657
Score = 87.8 bits (216), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 72/289 (24%), Positives = 121/289 (41%), Gaps = 82/289 (28%)
Query: 89 ARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYV 148
AR + + +N W+A+I GY G+ D+A+ ++ G M+
Sbjct: 102 ARRVIEPVQFRNPFLWTAVIRGYAIEGKFDEAIAMY----------------GCMR---- 141
Query: 149 ENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK-SPLC--- 204
E+ I P + + S++L C + L LG+Q H F+ C
Sbjct: 142 ----KEE------------ITPVSFTFSALLKACGTMKDLNLGRQFHAQTFRLRGFCFVY 185
Query: 205 ---------------------------KDTTALTPLISMYCKCGDLEDACKLFLEIQRKD 237
+D + T LI+ Y + G++E A +LF + KD
Sbjct: 186 VGNTMIDMYVKCESIDCARKVFDEMPERDVISWTELIAAYARVGNMECAAELFESLPTKD 245
Query: 238 VVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFD 297
+V W AM++G+AQ+ K ++AL FD+M+ G++ D +T + AC G +Y D
Sbjct: 246 MVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAGYISACAQLG----ASKYAD 301
Query: 298 SMVNDYGIAAK-----PDHY---TCMVDLLGRAGKLVEAVDLIKKMPFK 338
V IA K DH + ++D+ + G + EAV++ M K
Sbjct: 302 RAVQ---IAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFMSMNNK 347
Score = 62.4 bits (150), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 66/125 (52%), Gaps = 5/125 (4%)
Query: 173 SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLED--ACKLF 230
SSL S L C +L+ + KQ+H V + L + LT LI K G D A ++
Sbjct: 50 SSLISKLDDCINLNQI---KQIHGHVLRKGLDQSCYILTKLIRTLTKLGVPMDPYARRVI 106
Query: 231 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVD 290
+Q ++ W A+I GYA GK ++A+ ++ M+ E + P S TF ALL AC ++
Sbjct: 107 EPVQFRNPFLWTAVIRGYAIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGTMKDLN 166
Query: 291 LGIQY 295
LG Q+
Sbjct: 167 LGRQF 171
>sp|Q9SR82|PP219_ARATH Putative pentatricopeptide repeat-containing protein At3g08820
OS=Arabidopsis thaliana GN=PCMP-H84 PE=3 SV=1
Length = 685
Score = 384 bits (987), Expect = e-106, Method: Compositional matrix adjust.
Identities = 210/533 (39%), Positives = 306/533 (57%), Gaps = 15/533 (2%)
Query: 21 GKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRL---PIK-DTASWNTM 76
G+L DA +LFD+IP VV++ + S S A D F+++ +K D+ +
Sbjct: 160 GRLNDAHKLFDEIPDRSVVTWTALFSG-YTTSGRHREAIDLFKKMVEMGVKPDSYFIVQV 218
Query: 77 ISGFVQKKNMAKARDLFLAMPE----KNSVSWSAMISGYIECGQLDKAVELFKVAPVKSV 132
+S V ++ + M E KNS + +++ Y +CG+++KA +F K +
Sbjct: 219 LSACVHVGDLDSGEWIVKYMEEMEMQKNSFVRTTLVNLYAKCGKMEKARSVFDSMVEKDI 278
Query: 133 VAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGK 192
V W+ MI GY NS+ ++G++L M+ ++P+ S+ L C+ L +L LG+
Sbjct: 279 VTWSTMIQGY-----ASNSFPKEGIELFLQMLQENLKPDQFSIVGFLSSCASLGALDLGE 333
Query: 193 QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHG 252
L+ + + LI MY KCG + ++F E++ KD+V NA ISG A++G
Sbjct: 334 WGISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFKEMKEKDIVIMNAAISGLAKNG 393
Query: 253 KGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY 312
+ + +F + + G+ PD TF+ LL C HAGL+ G+++F+++ Y + +HY
Sbjct: 394 HVKLSFAVFGQTEKLGISPDGSTFLGLLCGCVHAGLIQDGLRFFNAISCVYALKRTVEHY 453
Query: 313 TCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNP 372
CMVDL GRAG L +A LI MP +P ++G LLS CR+ K LAE L L P
Sbjct: 454 GCMVDLWGRAGMLDDAYRLICDMPMRPNAIVWGALLSGCRLVKDTQLAETVLKELIALEP 513
Query: 373 ANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVH 432
NA G YVQL+NIY+ +WD+ A +R M + + K+PGYSWIE+ VHEF + D+ H
Sbjct: 514 WNA-GNYVQLSNIYSVGGRWDEAAEVRDMMNKKGMKKIPGYSWIELEGKVHEFLADDKSH 572
Query: 433 PELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPL 492
P I+ KL++L M+L G+VP EF V EE KE++L +HSEKLA+A GLI
Sbjct: 573 PLSDKIYAKLEDLGNEMRLMGFVPTTEFVFFDVEEEEKERVLGYHSEKLAVALGLISTDH 632
Query: 493 GTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
G IRV KNLRVCGDCH K IS I +REI+VRD RFH F +G+CSC DYW
Sbjct: 633 GQVIRVVKNLRVCGDCHEVMKLISKITRREIVVRDNNRFHCFTNGSCSCNDYW 685
Score = 129 bits (325), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 87/358 (24%), Positives = 162/358 (45%), Gaps = 52/358 (14%)
Query: 58 AFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPE------------------- 98
++ F + +N++I+GFV + DLFL++ +
Sbjct: 64 SYLLFSHTQFPNIFLYNSLINGFVNNHLFHETLDLFLSIRKHGLYLHGFTFPLVLKACTR 123
Query: 99 --------------------KNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAM 138
+ + ++++S Y G+L+ A +LF P +SVV WTA+
Sbjct: 124 ASSRKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTAL 183
Query: 139 ISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLV 198
SGY G + + L + M+ +G++P++ + VL C H+ L G+ + + +
Sbjct: 184 FSGYTTSGR-----HREAIDLFKKMVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYM 238
Query: 199 FKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKAL 258
+ + K++ T L+++Y KCG +E A +F + KD+VTW+ MI GYA + ++ +
Sbjct: 239 EEMEMQKNSFVRTTLVNLYAKCGKMEKARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGI 298
Query: 259 RLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDL 318
LF +M E +KPD + V L +C G +DLG ++ S+++ + ++D+
Sbjct: 299 ELFLQMLQENLKPDQFSIVGFLSSCASLGALDLG-EWGISLIDRHEFLTNLFMANALIDM 357
Query: 319 LGRAGKLVEAVDLIKKMPFKP----QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNP 372
+ G + ++ K+M K AI G A H +L A F ++P
Sbjct: 358 YAKCGAMARGFEVFKEMKEKDIVIMNAAISGL---AKNGHVKLSFAVFGQTEKLGISP 412
Score = 53.5 bits (127), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 63/268 (23%), Positives = 103/268 (38%), Gaps = 39/268 (14%)
Query: 174 SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI 233
+L SV +HL KQ+H + L DT + L+ + + LF
Sbjct: 18 TLISVACTVNHL------KQIHVSLINHHLHHDTFLVNLLLKRTLFFRQTKYSYLLFSHT 71
Query: 234 QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGI 293
Q ++ +N++I+G+ + + L LF ++ G+ TF +L AC A LGI
Sbjct: 72 QFPNIFLYNSLINGFVNNHLFHETLDLFLSIRKHGLYLHGFTFPLVLKACTRASSRKLGI 131
Query: 294 QYFDSMVN---DYGIAAK-----------------------PDH----YTCMVDLLGRAG 323
+V ++ +AA PD +T + +G
Sbjct: 132 DLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSG 191
Query: 324 KLVEAVDLIKK---MPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYV 380
+ EA+DL KK M KP +LSAC LD E+ + + +
Sbjct: 192 RHREAIDLFKKMVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEMEMQKNSFVRT 251
Query: 381 QLANIYAAMKKWDDVARIRLSMKENNVV 408
L N+YA K + + SM E ++V
Sbjct: 252 TLVNLYAKCGKMEKARSVFDSMVEKDIV 279
>sp|Q9SS60|PP210_ARATH Pentatricopeptide repeat-containing protein At3g03580
OS=Arabidopsis thaliana GN=PCMP-H23 PE=2 SV=1
Length = 882
Score = 384 bits (986), Expect = e-106, Method: Compositional matrix adjust.
Identities = 221/621 (35%), Positives = 336/621 (54%), Gaps = 82/621 (13%)
Query: 1 MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQ--PDVVS------------------ 40
M+V+ +V++N+++ G+ K + + + + Q PD+++
Sbjct: 268 MDVRDSVSYNTMICGYLKLEMVEESVRMFLENLDQFKPDLLTVSSVLRACGHLRDLSLAK 327
Query: 41 --YNIMLSC----------ILLN----SDDVVAAFDFFQRLPIKDTASWNTMISGFVQKK 84
YN ML IL++ D++ A D F + KDT SWN++ISG++Q
Sbjct: 328 YIYNYMLKAGFVLESTVRNILIDVYAKCGDMITARDVFNSMECKDTVSWNSIISGYIQSG 387
Query: 85 NMAKARDLF---LAMPEKN---------SVSW---------------------------S 105
++ +A LF + M E+ SVS +
Sbjct: 388 DLMEAMKLFKMMMIMEEQADHITYLMLISVSTRLADLKFGKGLHSNGIKSGICIDLSVSN 447
Query: 106 AMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIG 165
A+I Y +CG++ ++++F V W +IS ++FG GL++ M
Sbjct: 448 ALIDMYAKCGEVGDSLKIFSSMGTGDTVTWNTVISACVRFGDFAT-----GLQVTTQMRK 502
Query: 166 LGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLED 225
+ P+ ++ L C+ L++ +LGK++H + + + LI MY KCG LE+
Sbjct: 503 SEVVPDMATFLVTLPMCASLAAKRLGKEIHCCLLRFGYESELQIGNALIEMYSKCGCLEN 562
Query: 226 ACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNH 285
+ ++F + R+DVVTW MI Y +G+GEKAL F M+ G+ PDS+ F+A++ AC+H
Sbjct: 563 SSRVFERMSRRDVVTWTGMIYAYGMYGEGEKALETFADMEKSGIVPDSVVFIAIIYACSH 622
Query: 286 AGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFG 345
+GLVD G+ F+ M Y I +HY C+VDLL R+ K+ +A + I+ MP KP +I+
Sbjct: 623 SGLVDEGLACFEKMKTHYKIDPMIEHYACVVDLLSRSQKISKAEEFIQAMPIKPDASIWA 682
Query: 346 TLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKEN 405
++L ACR ++ AE + + LNP + G + +N YAA++KWD V+ IR S+K+
Sbjct: 683 SVLRACRTSGDMETAERVSRRIIELNP-DDPGYSILASNAYAALRKWDKVSLIRKSLKDK 741
Query: 406 NVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPD-LEFALHA 464
++ K PGYSWIEVG VH F SGD P+ +I++ L+ L M GY+PD E + +
Sbjct: 742 HITKNPGYSWIEVGKNVHVFSSGDDSAPQSEAIYKSLEILYSLMAKEGYIPDPREVSQNL 801
Query: 465 VGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREII 524
EE K +L+ HSE+LAIAFGL+ GTP++V KNLRVCGDCH TK IS I REI+
Sbjct: 802 EEEEEKRRLICGHSERLAIAFGLLNTEPGTPLQVMKNLRVCGDCHEVTKLISKIVGREIL 861
Query: 525 VRDTTRFHHFKDGTCSCGDYW 545
VRD RFH FKDGTCSC D W
Sbjct: 862 VRDANRFHLFKDGTCSCKDRW 882
Score = 108 bits (269), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 98/426 (23%), Positives = 177/426 (41%), Gaps = 88/426 (20%)
Query: 4 KTTVNWNSVLAGFAKQ---------RGKLKDAQELFDKIPQPDVVSY----------NIM 44
K WNS++ F+K GKL++++ DK P V+ +++
Sbjct: 69 KNVYLWNSIIRAFSKNGLFPEALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDLV 128
Query: 45 LSCIL---LNSDDVVA---------------AFDFFQRLPIKDTASWNTMISGFVQKKNM 86
IL SD V A F +P++D SWN++ISG+
Sbjct: 129 YEQILDMGFESDLFVGNALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLISGYSSHGYY 188
Query: 87 AKARDLFLAM------PEKNSVS---------------------------------WSAM 107
+A +++ + P+ +VS + +
Sbjct: 189 EEALEIYHELKNSWIVPDSFTVSSVLPAFGNLLVVKQGQGLHGFALKSGVNSVVVVNNGL 248
Query: 108 ISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGL- 166
++ Y++ + A +F V+ V++ MI GY+K VE S +RM +
Sbjct: 249 VAMYLKFRRPTDARRVFDEMDVRDSVSYNTMICGYLKLEMVEES--------VRMFLENL 300
Query: 167 -GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLED 225
+P+ ++SSVL C HL L L K ++ + K+ ++T LI +Y KCGD+
Sbjct: 301 DQFKPDLLTVSSVLRACGHLRDLSLAKYIYNYMLKAGFVLESTVRNILIDVYAKCGDMIT 360
Query: 226 ACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNH 285
A +F ++ KD V+WN++ISGY Q G +A++LF M + D IT++ L+
Sbjct: 361 ARDVFNSMECKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISVSTR 420
Query: 286 AGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFG 345
+ G + + GI ++D+ + G++ +++ + M +
Sbjct: 421 LADLKFGKGLHSNGIKS-GICIDLSVSNALIDMYAKCGEVGDSLKIFSSMG-TGDTVTWN 478
Query: 346 TLLSAC 351
T++SAC
Sbjct: 479 TVISAC 484
Score = 105 bits (262), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 90/411 (21%), Positives = 181/411 (44%), Gaps = 83/411 (20%)
Query: 1 MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCIL----------- 49
M V+ V+WNS+++G++ G ++A E++ ++ +V + +S +L
Sbjct: 167 MPVRDLVSWNSLISGYSSH-GYYEEALEIYHELKNSWIVPDSFTVSSVLPAFGNLLVVKQ 225
Query: 50 -----------------LNSDDVVAAFDFFQR----------LPIKDTASWNTMISGFVQ 82
+ ++ +VA + F+R + ++D+ S+NTMI G+++
Sbjct: 226 GQGLHGFALKSGVNSVVVVNNGLVAMYLKFRRPTDARRVFDEMDVRDSVSYNTMICGYLK 285
Query: 83 KKNMAKA----------------------------RDLFLAMPEKN----------SVSW 104
+ + ++ RDL LA N S
Sbjct: 286 LEMVEESVRMFLENLDQFKPDLLTVSSVLRACGHLRDLSLAKYIYNYMLKAGFVLESTVR 345
Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI 164
+ +I Y +CG + A ++F K V+W ++ISGY++ G + + +KL +MM+
Sbjct: 346 NILIDVYAKCGDMITARDVFNSMECKDTVSWNSIISGYIQSGDL-----MEAMKLFKMMM 400
Query: 165 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 224
+ + + + ++ + L+ L+ GK +H KS +C D + LI MY KCG++
Sbjct: 401 IMEEQADHITYLMLISVSTRLADLKFGKGLHSNGIKSGICIDLSVSNALIDMYAKCGEVG 460
Query: 225 DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 284
D+ K+F + D VTWN +IS + G L++ +M+ + PD TF+ L C
Sbjct: 461 DSLKIFSSMGTGDTVTWNTVISACVRFGDFATGLQVTTQMRKSEVVPDMATFLVTLPMCA 520
Query: 285 HAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335
LG + ++ +G ++ ++++ + G L + + ++M
Sbjct: 521 SLAAKRLGKEIHCCLLR-FGYESELQIGNALIEMYSKCGCLENSSRVFERM 570
Score = 83.6 bits (205), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 88/168 (52%), Gaps = 5/168 (2%)
Query: 125 KVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSH 184
+V+P K+V W ++I + K N + L+ + + P+ + SV+ C+
Sbjct: 64 RVSPAKNVYLWNSIIRAFSK-----NGLFPEALEFYGKLRESKVSPDKYTFPSVIKACAG 118
Query: 185 LSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAM 244
L ++G V++ + D L+ MY + G L A ++F E+ +D+V+WN++
Sbjct: 119 LFDAEMGDLVYEQILDMGFESDLFVGNALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSL 178
Query: 245 ISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 292
ISGY+ HG E+AL ++ ++K+ + PDS T ++L A + +V G
Sbjct: 179 ISGYSSHGYYEEALEIYHELKNSWIVPDSFTVSSVLPAFGNLLVVKQG 226
>sp|Q9STF3|PP265_ARATH Pentatricopeptide repeat-containing protein At3g46790,
chloroplastic OS=Arabidopsis thaliana GN=CRR2 PE=2 SV=1
Length = 657
Score = 384 bits (986), Expect = e-105, Method: Compositional matrix adjust.
Identities = 202/546 (36%), Positives = 327/546 (59%), Gaps = 19/546 (3%)
Query: 13 LAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILL--NSDDVVAAFDFFQRLPIK-D 69
L G G + A+++FDK + + +N + + L + ++V+ + R+ ++ D
Sbjct: 118 LIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVESD 177
Query: 70 TASWNTMISGFVQKK----NMAKARDLFLAMPEKNSVS----WSAMISGYIECGQLDKAV 121
++ ++ V + ++ K +++ + + S + ++ Y G +D A
Sbjct: 178 RFTYTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSSHVYIMTTLVDMYARFGCVDYAS 237
Query: 122 ELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI--GLGIRPNASSLSSVL 179
+F PV++VV+W+AMI+ Y K N A + L+ R M+ PN+ ++ SVL
Sbjct: 238 YVFGGMPVRNVVSWSAMIACYAK-----NGKAFEALRTFREMMRETKDSSPNSVTMVSVL 292
Query: 180 LGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVV 239
C+ L++L+ GK +H + + L ++ L++MY +CG LE ++F + +DVV
Sbjct: 293 QACASLAALEQGKLIHGYILRRGLDSILPVISALVTMYGRCGKLEVGQRVFDRMHDRDVV 352
Query: 240 TWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSM 299
+WN++IS Y HG G+KA+++F++M G P +TFV++L AC+H GLV+ G + F++M
Sbjct: 353 SWNSLISSYGVHGYGKKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFETM 412
Query: 300 VNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDL 359
D+GI + +HY CMVDLLGRA +L EA +++ M +P P ++G+LL +CR+H ++L
Sbjct: 413 WRDHGIKPQIEHYACMVDLLGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVEL 472
Query: 360 AEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVG 419
AE A+ LF L P N AG YV LA+IYA + WD+V R++ ++ + K+PG W+EV
Sbjct: 473 AERASRRLFALEPKN-AGNYVLLADIYAEAQMWDEVKRVKKLLEHRGLQKLPGRCWMEVR 531
Query: 420 TVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSE 479
++ F S D +P + IH L +L + MK GY+P + L+ + E KE+++L HSE
Sbjct: 532 RKMYSFVSVDEFNPLMEQIHAFLVKLAEDMKEKGYIPQTKGVLYELETEEKERIVLGHSE 591
Query: 480 KLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTC 539
KLA+AFGLI G PIR+ KNLR+C DCH TK+IS ++EI+VRD RFH FK+G C
Sbjct: 592 KLALAFGLINTSKGEPIRITKNLRLCEDCHLFTKFISKFMEKEILVRDVNRFHRFKNGVC 651
Query: 540 SCGDYW 545
SCGDYW
Sbjct: 652 SCGDYW 657
Score = 65.9 bits (159), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 81/176 (46%), Gaps = 11/176 (6%)
Query: 170 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKL 229
P+ + ++L C H SSL +VH+ + + +D T LI MY G ++ A K+
Sbjct: 75 PSQQTYELLILCCGHRSSLSDALRVHRHILDNGSDQDPFLATKLIGMYSDLGSVDYARKV 134
Query: 230 FLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC------ 283
F + +++ + WNA+ G GE+ L L+ KM G++ D T+ +L AC
Sbjct: 135 FDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKACVASECT 194
Query: 284 -NHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 338
NH + + + + G ++ T +VD+ R G + A + MP +
Sbjct: 195 VNHL----MKGKEIHAHLTRRGYSSHVYIMTTLVDMYARFGCVDYASYVFGGMPVR 246
Score = 58.2 bits (139), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/261 (21%), Positives = 112/261 (42%), Gaps = 30/261 (11%)
Query: 1 MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
M V+ V+W++++A +AK GK +A F + M+ +S + V
Sbjct: 243 MPVRNVVSWSAMIACYAKN-GKAFEALRTFRE-----------MMRETKDSSPNSVTMVS 290
Query: 61 FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKA 120
Q +I G++ ++ + D L + SA+++ Y CG+L+
Sbjct: 291 VLQACASLAALEQGKLIHGYILRRGL----DSILPV-------ISALVTMYGRCGKLEVG 339
Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLL 180
+F + VV+W ++IS Y GY + +++ M+ G P + SVL
Sbjct: 340 QRVFDRMHDRDVVSWNSLISSYGVHGY-----GKKAIQIFEEMLANGASPTPVTFVSVLG 394
Query: 181 GCSHLSSLQLGKQVHQLVFKSPLCK-DTTALTPLISMYCKCGDLEDACKLFLEIQRK-DV 238
CSH ++ GK++ + +++ K ++ + + L++A K+ +++ +
Sbjct: 395 ACSHEGLVEEGKRLFETMWRDHGIKPQIEHYACMVDLLGRANRLDEAAKMVQDMRTEPGP 454
Query: 239 VTWNAMISGYAQHGKGEKALR 259
W +++ HG E A R
Sbjct: 455 KVWGSLLGSCRIHGNVELAER 475
>sp|Q9FG16|PP367_ARATH Pentatricopeptide repeat-containing protein At5g06540
OS=Arabidopsis thaliana GN=PCMP-H88 PE=2 SV=1
Length = 622
Score = 383 bits (983), Expect = e-105, Method: Compositional matrix adjust.
Identities = 199/517 (38%), Positives = 303/517 (58%), Gaps = 12/517 (2%)
Query: 31 DKIPQPDVVSYNIMLSCILLNSDDVVAAFDF-FQRLPIKDTASWNTMISGFVQKKNMAKA 89
D I P ++ + + C+L+ F FQ D N+++ + +A A
Sbjct: 116 DNITFPFLIKASSEMECVLVGEQTHSQIVRFGFQ----NDVYVENSLVHMYANCGFIAAA 171
Query: 90 RDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVE 149
+F M ++ VSW++M++GY +CG ++ A E+F P +++ W+ MI+GY K
Sbjct: 172 GRIFGQMGFRDVVSWTSMVAGYCKCGMVENAREMFDEMPHRNLFTWSIMINGYAK----- 226
Query: 150 NSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTA 209
N+ E + L M G+ N + + SV+ C+HL +L+ G++ ++ V KS + +
Sbjct: 227 NNCFEKAIDLFEFMKREGVVANETVMVSVISSCAHLGALEFGERAYEYVVKSHMTVNLIL 286
Query: 210 LTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGM 269
T L+ M+ +CGD+E A +F + D ++W+++I G A HG KA+ F +M G
Sbjct: 287 GTALVDMFWRCGDIEKAIHVFEGLPETDSLSWSSIIKGLAVHGHAHKAMHYFSQMISLGF 346
Query: 270 KPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAV 329
P +TF A+L AC+H GLV+ G++ +++M D+GI + +HY C+VD+LGRAGKL EA
Sbjct: 347 IPRDVTFTAVLSACSHGGLVEKGLEIYENMKKDHGIEPRLEHYGCIVDMLGRAGKLAEAE 406
Query: 330 DLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAM 389
+ I KM KP I G LL AC+++K ++AE L + P + +G YV L+NIYA
Sbjct: 407 NFILKMHVKPNAPILGALLGACKIYKNTEVAERVGNMLIKVKPEH-SGYYVLLSNIYACA 465
Query: 390 KKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSG-DRVHPELVSIHEKLKELEKR 448
+WD + +R MKE V K PG+S IE+ +++F G D+ HPE+ I K +E+ +
Sbjct: 466 GQWDKIESLRDMMKEKLVKKPPGWSLIEIDGKINKFTMGDDQKHPEMGKIRRKWEEILGK 525
Query: 449 MKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDC 508
++L GY + A V EE KE + HSEKLAIA+G++K GT IR+ KNLRVC DC
Sbjct: 526 IRLIGYKGNTGDAFFDVDEEEKESSIHMHSEKLAIAYGMMKTKPGTTIRIVKNLRVCEDC 585
Query: 509 HRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
H TK IS + RE+IVRD RFHHF++G CSC DYW
Sbjct: 586 HTVTKLISEVYGRELIVRDRNRFHHFRNGVCSCRDYW 622
Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 106/205 (51%), Gaps = 17/205 (8%)
Query: 1 MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNS--DDVVAA 58
M + V+W S++AG+ K G +++A+E+FD++P ++ +++IM++ N+ + +
Sbjct: 178 MGFRDVVSWTSMVAGYCKC-GMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDL 236
Query: 59 FDFFQRLPIKDTASWNTMISGFVQKKNMA------KARDLFL-AMPEKNSVSWSAMISGY 111
F+F +R + A+ M+S ++ +A + + + N + +A++ +
Sbjct: 237 FEFMKREGV--VANETVMVSVISSCAHLGALEFGERAYEYVVKSHMTVNLILGTALVDMF 294
Query: 112 IECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPN 171
CG ++KA+ +F+ P ++W+++I G G+ A + MI LG P
Sbjct: 295 WRCGDIEKAIHVFEGLPETDSLSWSSIIKGLAVHGH-----AHKAMHYFSQMISLGFIPR 349
Query: 172 ASSLSSVLLGCSHLSSLQLGKQVHQ 196
+ ++VL CSH ++ G ++++
Sbjct: 350 DVTFTAVLSACSHGGLVEKGLEIYE 374
Score = 72.0 bits (175), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/200 (22%), Positives = 91/200 (45%), Gaps = 32/200 (16%)
Query: 168 IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC 227
I P+ + ++ S + + +G+Q H + + D L+ MY CG + A
Sbjct: 113 IWPDNITFPFLIKASSEMECVLVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGFIAAAG 172
Query: 228 KLFLEIQRKDVVTWNA-------------------------------MISGYAQHGKGEK 256
++F ++ +DVV+W + MI+GYA++ EK
Sbjct: 173 RIFGQMGFRDVVSWTSMVAGYCKCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEK 232
Query: 257 ALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMV 316
A+ LF+ MK EG+ + V+++ +C H G ++ G + ++ +V + + T +V
Sbjct: 233 AIDLFEFMKREGVVANETVMVSVISSCAHLGALEFGERAYEYVVKSH-MTVNLILGTALV 291
Query: 317 DLLGRAGKLVEAVDLIKKMP 336
D+ R G + +A+ + + +P
Sbjct: 292 DMFWRCGDIEKAIHVFEGLP 311
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/238 (21%), Positives = 97/238 (40%), Gaps = 25/238 (10%)
Query: 177 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGD----------LEDA 226
++L CS S L++ +H + ++ L D + L+++ C D L A
Sbjct: 17 ALLQSCSSFSDLKI---IHGFLLRTHLISDVFVASRLLAL---CVDDSTFNKPTNLLGYA 70
Query: 227 CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHA 286
+F +IQ ++ +N +I ++ + KA + +M + PD+ITF L+ A +
Sbjct: 71 YGIFSQIQNPNLFVFNLLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASSEM 130
Query: 287 GLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGT 346
V +G Q +V +G +V + G + A + +M F+ +
Sbjct: 131 ECVLVGEQTHSQIVR-FGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRDVVSWTSM 189
Query: 347 LLSACRV----HKRLDLAEFAAMNLFN----LNPANAAGCYVQLANIYAAMKKWDDVA 396
+ C+ + R E NLF +N C+ + +++ MK+ VA
Sbjct: 190 VAGYCKCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGVVA 247
>sp|Q9LIQ7|PP252_ARATH Pentatricopeptide repeat-containing protein At3g24000,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H87 PE=2
SV=1
Length = 633
Score = 381 bits (978), Expect = e-105, Method: Compositional matrix adjust.
Identities = 211/545 (38%), Positives = 321/545 (58%), Gaps = 19/545 (3%)
Query: 10 NSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD 69
N++L +AK G L++A+++F+K+PQ D V++ ++S D A FF ++ ++
Sbjct: 99 NTLLNMYAKC-GSLEEARKVFEKMPQRDFVTWTTLISG-YSQHDRPCDALLFFNQM-LRF 155
Query: 70 TASWNTMISGFVQKKNMAKARDL---------FLAMPEKNSVSWSAMISGYIECGQLDKA 120
S N V K A+ R + N SA++ Y G +D A
Sbjct: 156 GYSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDA 215
Query: 121 VELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLL 180
+F ++ V+W A+I+G+ + S E L+L + M+ G RP+ S +S+
Sbjct: 216 QLVFDALESRNDVSWNALIAGHAR-----RSGTEKALELFQGMLRDGFRPSHFSYASLFG 270
Query: 181 GCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVT 240
CS L+ GK VH + KS A L+ MY K G + DA K+F + ++DVV+
Sbjct: 271 ACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVS 330
Query: 241 WNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV 300
WN++++ YAQHG G++A+ F++M+ G++P+ I+F+++L AC+H+GL+D G Y++ M
Sbjct: 331 WNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACSHSGLLDEGWHYYELMK 390
Query: 301 NDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLA 360
D GI + HY +VDLLGRAG L A+ I++MP +P AI+ LL+ACR+HK +L
Sbjct: 391 KD-GIVPEAWHYVTVVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALLNACRMHKNTELG 449
Query: 361 EFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGT 420
+AA ++F L+P + G +V L NIYA+ +W+D AR+R MKE+ V K P SW+E+
Sbjct: 450 AYAAEHVFELDPDDP-GPHVILYNIYASGGRWNDAARVRKKMKESGVKKEPACSWVEIEN 508
Query: 421 VVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEK 480
+H F + D HP+ I K +E+ ++K GYVPD + V ++ +E L +HSEK
Sbjct: 509 AIHMFVANDERHPQREEIARKWEEVLAKIKELGYVPDTSHVIVHVDQQEREVNLQYHSEK 568
Query: 481 LAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCS 540
+A+AF L+ P G+ I + KN+RVCGDCH A K S + REIIVRDT RFHHFKDG CS
Sbjct: 569 IALAFALLNTPPGSTIHIKKNIRVCGDCHTAIKLASKVVGREIIVRDTNRFHHFKDGNCS 628
Query: 541 CGDYW 545
C DYW
Sbjct: 629 CKDYW 633
Score = 75.1 bits (183), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/271 (23%), Positives = 115/271 (42%), Gaps = 43/271 (15%)
Query: 176 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR 235
+++L C+ L G+ VH + +S D L++MY KCG LE+A K+F ++ +
Sbjct: 64 NTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMPQ 123
Query: 236 KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA--------CNH-- 285
+D VTW +ISGY+QH + AL F++M G P+ T +++ A C H
Sbjct: 124 RDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQL 183
Query: 286 ----------------AGLVDLGIQY---------FDSMVNDYGIAAKPDHYTCMVDLLG 320
+ L+DL +Y FD++ + ++ + ++
Sbjct: 184 HGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVS-----WNALIAGHA 238
Query: 321 RAGKLVEAVDLIKKM---PFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAG 377
R +A++L + M F+P + +L AC L+ ++ + A
Sbjct: 239 RRSGTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAF 298
Query: 378 CYVQLANIYAAMKKWDDVARIRLSMKENNVV 408
L ++YA D +I + + +VV
Sbjct: 299 AGNTLLDMYAKSGSIHDARKIFDRLAKRDVV 329
Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/264 (22%), Positives = 106/264 (40%), Gaps = 47/264 (17%)
Query: 1 MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQ----PDVVSYNIML----SCILLNS 52
+ + V+WN+++AG A++ G K A ELF + + P SY + S L
Sbjct: 222 LESRNDVSWNALIAGHARRSGTEK-ALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQ 280
Query: 53 DDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYI 112
V A+ + A NT++ + + ++ AR +F + +++ VSW+++++ Y
Sbjct: 281 GKWVHAYMIKSGEKLVAFAG-NTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYA 339
Query: 113 ECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNA 172
+ G FG W E+ M +GIRPN
Sbjct: 340 QHG-----------------------------FGKEAVWWFEE-------MRRVGIRPNE 363
Query: 173 SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLE 232
S SVL CSH L G ++L+ K + + ++ + + GDL A + E
Sbjct: 364 ISFLSVLTACSHSGLLDEGWHYYELMKKDGIVPEAWHYVTVVDLLGRAGDLNRALRFIEE 423
Query: 233 IQ-RKDVVTWNAMISGYAQHGKGE 255
+ W A+++ H E
Sbjct: 424 MPIEPTAAIWKALLNACRMHKNTE 447
>sp|O23266|PP308_ARATH Pentatricopeptide repeat-containing protein At4g14050,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H13 PE=2
SV=3
Length = 612
Score = 381 bits (978), Expect = e-105, Method: Compositional matrix adjust.
Identities = 197/479 (41%), Positives = 291/479 (60%), Gaps = 17/479 (3%)
Query: 74 NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVV 133
++++ + + + A+ +F ++ KN++SW+AM+SGY + G+ ++A+ELF++ PVK++
Sbjct: 144 SSLVDMYAKCGLLNSAKAVFDSIRVKNTISWTAMVSGYAKSGRKEEALELFRILPVKNLY 203
Query: 134 AWTAMISGYMKFG------YVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSS 187
+WTA+ISG+++ G V + + +L ++ LSS++ C++L++
Sbjct: 204 SWTALISGFVQSGKGLEAFSVFTEMRRERVDILDPLV----------LSSIVGACANLAA 253
Query: 188 LQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISG 247
G+QVH LV LI MY KC D+ A +F ++ +DVV+W ++I G
Sbjct: 254 SIAGRQVHGLVIALGFDSCVFISNALIDMYAKCSDVIAAKDIFSRMRHRDVVSWTSLIVG 313
Query: 248 YAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAA 307
AQHG+ EKAL L+D M G+KP+ +TFV L+ AC+H G V+ G + F SM DYGI
Sbjct: 314 MAQHGQAEKALALYDDMVSHGVKPNEVTFVGLIYACSHVGFVEKGRELFQSMTKDYGIRP 373
Query: 308 KPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNL 367
HYTC++DLLGR+G L EA +LI MPF P + LLSAC+ R + A +L
Sbjct: 374 SLQHYTCLLDLLGRSGLLDEAENLIHTMPFPPDEPTWAALLSACKRQGRGQMGIRIADHL 433
Query: 368 FNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRS 427
+ Y+ L+NIYA+ W V+ R + E V K PG+S +EV F +
Sbjct: 434 VSSFKLKDPSTYILLSNIYASASLWGKVSEARRKLGEMEVRKDPGHSSVEVRKETEVFYA 493
Query: 428 GDRVHPELVSIHEKLKELEKRMKLA-GYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFG 486
G+ HP I LK+LE+ M++ GYVPD + LH + E+ KE+LL +HSE+ A+A+G
Sbjct: 494 GETSHPLKEDIFRLLKKLEEEMRIRNGYVPDTSWILHDMDEQEKEKLLFWHSERSAVAYG 553
Query: 487 LIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
L+K GTPIR+ KNLRVCGDCH K+IS I +REIIVRD TR+HHFK G CSC D+W
Sbjct: 554 LLKAVPGTPIRIVKNLRVCGDCHVVLKHISEITEREIIVRDATRYHHFKGGKCSCNDFW 612
Score = 90.5 bits (223), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 72/290 (24%), Positives = 141/290 (48%), Gaps = 18/290 (6%)
Query: 1 MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFD 60
+ VK T++W ++++G+AK G+ ++A ELF +P ++ S+ ++S + S + AF
Sbjct: 166 IRVKNTISWTAMVSGYAKS-GRKEEALELFRILPVKNLYSWTALISG-FVQSGKGLEAFS 223
Query: 61 FF-----QRLPIKDTASWNTMISGFVQKKNMAKARD---LFLAMPEKNSVSWS-AMISGY 111
F +R+ I D ++++ R L +A+ + V S A+I Y
Sbjct: 224 VFTEMRRERVDILDPLVLSSIVGACANLAASIAGRQVHGLVIALGFDSCVFISNALIDMY 283
Query: 112 IECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPN 171
+C + A ++F + VV+WT++I G + G AE L L M+ G++PN
Sbjct: 284 AKCSDVIAAKDIFSRMRHRDVVSWTSLIVGMAQHGQ-----AEKALALYDDMVSHGVKPN 338
Query: 172 ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDT-TALTPLISMYCKCGDLEDACKLF 230
+ ++ CSH+ ++ G+++ Q + K + + T L+ + + G L++A L
Sbjct: 339 EVTFVGLIYACSHVGFVEKGRELFQSMTKDYGIRPSLQHYTCLLDLLGRSGLLDEAENLI 398
Query: 231 LEIQ-RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVAL 279
+ D TW A++S + G+G+ +R+ D + D T++ L
Sbjct: 399 HTMPFPPDEPTWAALLSACKRQGRGQMGIRIADHLVSSFKLKDPSTYILL 448
Score = 84.3 bits (207), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 83/157 (52%), Gaps = 4/157 (2%)
Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI 164
+ +++ Y +CG A+++F P + +AW ++++ + N + +
Sbjct: 42 NTLVNVYGKCGAASHALQVFDEMPHRDHIAWASVLTALNQ----ANLSGKTLSVFSSVGS 97
Query: 165 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 224
G+RP+ S+++ C++L S+ G+QVH S D + L+ MY KCG L
Sbjct: 98 SSGLRPDDFVFSALVKACANLGSIDHGRQVHCHFIVSEYANDEVVKSSLVDMYAKCGLLN 157
Query: 225 DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLF 261
A +F I+ K+ ++W AM+SGYA+ G+ E+AL LF
Sbjct: 158 SAKAVFDSIRVKNTISWTAMVSGYAKSGRKEEALELF 194
Score = 49.7 bits (117), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 69/149 (46%), Gaps = 4/149 (2%)
Query: 182 CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTW 241
C+ +L K +H + K + + L+++Y KCG A ++F E+ +D + W
Sbjct: 13 CARNRTLTTAKALHAHIVKLGIVQCCPLANTLVNVYGKCGAASHALQVFDEMPHRDHIAW 72
Query: 242 NAMISGYAQHGKGEKAL-RLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ-YFDSM 299
++++ Q K L G++PD F AL+ AC + G +D G Q + +
Sbjct: 73 ASVLTALNQANLSGKTLSVFSSVGSSSGLRPDDFVFSALVKACANLGSIDHGRQVHCHFI 132
Query: 300 VNDYGIAAKPDHYTCMVDLLGRAGKLVEA 328
V++Y A + +VD+ + G L A
Sbjct: 133 VSEY--ANDEVVKSSLVDMYAKCGLLNSA 159
>sp|Q9LUJ2|PP249_ARATH Pentatricopeptide repeat-containing protein At3g22690
OS=Arabidopsis thaliana GN=PCMP-H56 PE=2 SV=1
Length = 842
Score = 380 bits (976), Expect = e-104, Method: Compositional matrix adjust.
Identities = 195/473 (41%), Positives = 286/473 (60%), Gaps = 7/473 (1%)
Query: 74 NTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVV 133
N +I +++ A +F M K V+W+++++GY+E G++D A E F+ P K++V
Sbjct: 376 NALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIV 435
Query: 134 AWTAMISGYMKFGYVENSWAEDGLKLL-RMMIGLGIRPNASSLSSVLLGCSHLSSLQLGK 192
+W +ISG V+ S E+ +++ M G+ + ++ S+ C HL +L L K
Sbjct: 436 SWNTIISGL-----VQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAK 490
Query: 193 QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHG 252
++ + K+ + D T L+ M+ +CGD E A +F + +DV W A I A G
Sbjct: 491 WIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAG 550
Query: 253 KGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY 312
E+A+ LFD M ++G+KPD + FV L AC+H GLV G + F SM+ +G++ + HY
Sbjct: 551 NAERAIELFDDMIEQGLKPDGVAFVGALTACSHGGLVQQGKEIFYSMLKLHGVSPEDVHY 610
Query: 313 TCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNP 372
CMVDLLGRAG L EAV LI+ MP +P I+ +LL+ACRV +++A +AA + L P
Sbjct: 611 GCMVDLLGRAGLLEEAVQLIEDMPMEPNDVIWNSLLAACRVQGNVEMAAYAAEKIQVLAP 670
Query: 373 ANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVH 432
G YV L+N+YA+ +W+D+A++RLSMKE + K PG S I++ HEF SGD H
Sbjct: 671 ERT-GSYVLLSNVYASAGRWNDMAKVRLSMKEKGLRKPPGTSSIQIRGKTHEFTSGDESH 729
Query: 433 PELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPL 492
PE+ +I L E+ +R G+VPDL L V E+ K +L HSEKLA+A+GLI
Sbjct: 730 PEMPNIEAMLDEVSQRASHLGHVPDLSNVLMDVDEKEKIFMLSRHSEKLAMAYGLISSNK 789
Query: 493 GTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545
GT IR+ KNLRVC DCH K+ S + REII+RD RFH+ + G CSCGD+W
Sbjct: 790 GTTIRIVKNLRVCSDCHSFAKFASKVYNREIILRDNNRFHYIRQGKCSCGDFW 842
Score = 115 bits (288), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 90/373 (24%), Positives = 163/373 (43%), Gaps = 52/373 (13%)
Query: 13 LAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTAS 72
L F + G+L A+++FD++ + +VVS+ M+ C D A D F R+ + +
Sbjct: 175 LVHFYAECGELDSARKVFDEMSERNVVSWTSMI-CGYARRDFAKDAVDLFFRMVRDEEVT 233
Query: 73 WNTM-----ISGFVQKKNMAKARDLFLAMP----EKNSVSWSAMISGYIECGQLDKAVEL 123
N++ IS + +++ ++ + E N + SA++ Y++C +D A L
Sbjct: 234 PNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRL 293
Query: 124 FKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCS 183
F ++ AM S Y++ G + L + +M+ G+RP+ S+ S + CS
Sbjct: 294 FDEYGASNLDLCNAMASNYVRQGLTR-----EALGVFNLMMDSGVRPDRISMLSAISSCS 348
Query: 184 HLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNA 243
L ++ GK H V ++ LI MY KC + A ++F + K VVTWN+
Sbjct: 349 QLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNS 408
Query: 244 MISGYAQHGKGEKALRLFDKMKD--------------------------------EGMKP 271
+++GY ++G+ + A F+ M + EG+
Sbjct: 409 IVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNA 468
Query: 272 DSITFVALLLACNHAGLVDLG--IQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAV 329
D +T +++ AC H G +DL I Y+ + GI T +VD+ R G A+
Sbjct: 469 DGVTMMSIASACGHLGALDLAKWIYYY---IEKNGIQLDVRLGTTLVDMFSRCGDPESAM 525
Query: 330 DLIKKMPFKPQPA 342
+ + + A
Sbjct: 526 SIFNSLTNRDVSA 538
Score = 107 bits (268), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/210 (30%), Positives = 115/210 (54%), Gaps = 17/210 (8%)
Query: 77 ISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWT 136
I G + K M A+DLF+ ++++ Y ECG+LD A ++F ++VV+WT
Sbjct: 156 IHGLIVK--MGYAKDLFVQ---------NSLVHFYAECGELDSARKVFDEMSERNVVSWT 204
Query: 137 AMISGYMKFGYVENSWAEDGLKL-LRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVH 195
+MI GY + +A+D + L RM+ + PN+ ++ V+ C+ L L+ G++V+
Sbjct: 205 SMICGYAR-----RDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVY 259
Query: 196 QLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGE 255
+ S + + ++ L+ MY KC ++ A +LF E ++ NAM S Y + G
Sbjct: 260 AFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTR 319
Query: 256 KALRLFDKMKDEGMKPDSITFVALLLACNH 285
+AL +F+ M D G++PD I+ ++ + +C+
Sbjct: 320 EALGVFNLMMDSGVRPDRISMLSAISSCSQ 349
Score = 89.0 bits (219), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 98/191 (51%), Gaps = 6/191 (3%)
Query: 146 GYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCK 205
GY + + + L M+ GI P+ + L C+ + G Q+H L+ K K
Sbjct: 108 GYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIVKMGYAK 167
Query: 206 DTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKM- 264
D L+ Y +CG+L+ A K+F E+ ++VV+W +MI GYA+ + A+ LF +M
Sbjct: 168 DLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFFRMV 227
Query: 265 KDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGK 324
+DE + P+S+T V ++ AC ++ G + + + + + GI + +VD+ +
Sbjct: 228 RDEEVTPNSVTMVCVISACAKLEDLETGEKVY-AFIRNSGIEVNDLMVSALVDMYMKC-- 284
Query: 325 LVEAVDLIKKM 335
A+D+ K++
Sbjct: 285 --NAIDVAKRL 293
Score = 75.5 bits (184), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 70/280 (25%), Positives = 135/280 (48%), Gaps = 26/280 (9%)
Query: 1 MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNS--DDVVAA 58
M+ KT V WNS++AG+ + G++ A E F+ +P+ ++VS+N ++S ++ S ++ +
Sbjct: 398 MSNKTVVTWNSIVAGYV-ENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEV 456
Query: 59 FDFFQRLPIKDTASWNTMIS-----GFVQKKNMAKARDLFLAMPEKNSVSW-----SAMI 108
F Q + A TM+S G + ++AK ++ EKN + + ++
Sbjct: 457 FCSMQSQEGVN-ADGVTMMSIASACGHLGALDLAKWIYYYI---EKNGIQLDVRLGTTLV 512
Query: 109 SGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGI 168
+ CG + A+ +F + V AWTA I G AE ++L MI G+
Sbjct: 513 DMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGN-----AERAIELFDDMIEQGL 567
Query: 169 RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK-SPLCKDTTALTPLISMYCKCGDLEDAC 227
+P+ + L CSH +Q GK++ + K + + ++ + + G LE+A
Sbjct: 568 KPDGVAFVGALTACSHGGLVQQGKEIFYSMLKLHGVSPEDVHYGCMVDLLGRAGLLEEAV 627
Query: 228 KLF--LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMK 265
+L + ++ DV+ WN++++ G E A +K++
Sbjct: 628 QLIEDMPMEPNDVI-WNSLLAACRVQGNVEMAAYAAEKIQ 666
Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 57/122 (46%), Gaps = 7/122 (5%)
Query: 177 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLED---ACKLFLEI 233
S L C + L K H+ + K L D + +T L++ C+ G E A ++F
Sbjct: 37 SSLKNCKTIDEL---KMFHRSLTKQGLDNDVSTITKLVARSCELGTRESLSFAKEVFENS 93
Query: 234 QRKDVV-TWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 292
+ +N++I GYA G +A+ LF +M + G+ PD TF L AC + G
Sbjct: 94 ESYGTCFMYNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNG 153
Query: 293 IQ 294
IQ
Sbjct: 154 IQ 155
>sp|P0C899|PP271_ARATH Putative pentatricopeptide repeat-containing protein At3g49142
OS=Arabidopsis thaliana GN=PCMP-H77 PE=3 SV=1
Length = 686
Score = 380 bits (976), Expect = e-104, Method: Compositional matrix adjust.
Identities = 211/491 (42%), Positives = 278/491 (56%), Gaps = 21/491 (4%)
Query: 68 KDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVE----- 122
+D SWN+++ G+ Q + A ++ M E +S A + + E
Sbjct: 204 RDVVSWNSLVVGYAQNQRFDDALEVCREM-ESVKISHDAGTMASLLPAVSNTTTENVMYV 262
Query: 123 ---LFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVL 179
FK+ KS+V+W MI YMK N+ + ++L M G P+A S++SVL
Sbjct: 263 KDMFFKMGK-KSLVSWNVMIGVYMK-----NAMPVEAVELYSRMEADGFEPDAVSITSVL 316
Query: 180 LGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVV 239
C S+L LGK++H + + L + LI MY KCG LE A +F ++ +DVV
Sbjct: 317 PACGDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDVV 376
Query: 240 TWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSM 299
+W AMIS Y G+G A+ LF K++D G+ PDSI FV L AC+HAGL++ G F M
Sbjct: 377 SWTAMISAYGFSGRGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLM 436
Query: 300 VNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDL 359
+ Y I + +H CMVDLLGRAGK+ EA I+ M +P ++G LL ACRVH D+
Sbjct: 437 TDHYKITPRLEHLACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALLGACRVHSDTDI 496
Query: 360 AEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVG 419
AA LF L P +G YV L+NIYA +W++V IR MK + K PG S +EV
Sbjct: 497 GLLAADKLFQLAPEQ-SGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVN 555
Query: 420 TVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSE 479
++H F GDR HP+ I+ +L L K+MK GYVPD E ALH V EE KE L HSE
Sbjct: 556 RIIHTFLVGDRSHPQSDEIYRELDVLVKKMKELGYVPDSESALHDVEEEDKETHLAVHSE 615
Query: 480 KLAIAFGLIKVP-----LGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHF 534
KLAI F L+ IR+ KNLR+CGDCH A K IS I REII+RDT RFH F
Sbjct: 616 KLAIVFALMNTKEEEEDSNNTIRITKNLRICGDCHVAAKLISQITSREIIIRDTNRFHVF 675
Query: 535 KDGTCSCGDYW 545
+ G CSCGDYW
Sbjct: 676 RFGVCSCGDYW 686
Score = 99.0 bits (245), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 69/255 (27%), Positives = 122/255 (47%), Gaps = 11/255 (4%)
Query: 100 NSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKL 159
NS ++ Y + A ++F P ++V+ MI Y V N + +G+K+
Sbjct: 73 NSSLGVKLMRAYASLKDVASARKVFDEIPERNVIIINVMIRSY-----VNNGFYGEGVKV 127
Query: 160 LRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCK 219
M G +RP+ + VL CS ++ +G+++H K L L+SMY K
Sbjct: 128 FGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGK 187
Query: 220 CGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVAL 279
CG L +A + E+ R+DVV+WN+++ GYAQ+ + + AL + +M+ + D+ T +L
Sbjct: 188 CGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASL 247
Query: 280 LLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP--- 336
L A ++ + + Y M G + + M+ + + VEAV+L +M
Sbjct: 248 LPAVSNTTTEN--VMYVKDMFFKMGKKSLVS-WNVMIGVYMKNAMPVEAVELYSRMEADG 304
Query: 337 FKPQPAIFGTLLSAC 351
F+P ++L AC
Sbjct: 305 FEPDAVSITSVLPAC 319
Score = 78.2 bits (191), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 94/414 (22%), Positives = 171/414 (41%), Gaps = 98/414 (23%)
Query: 1 MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCIL-----LNSDDV 55
M+ + V+WNS++ G+A Q + DA E+ ++ + ++ +L +++V
Sbjct: 201 MSRRDVVSWNSLVVGYA-QNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTENV 259
Query: 56 VAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWSAM---- 107
+ D F ++ K SWN MI +++ +A +L+ M E ++VS +++
Sbjct: 260 MYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPAC 319
Query: 108 -----------ISGYIE--------------------CGQLDKAVELFKVAPVKSVVAWT 136
I GYIE CG L+KA ++F+ + VV+WT
Sbjct: 320 GDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDVVSWT 379
Query: 137 AMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQ 196
AMIS Y G+ + D + L + G+ P++ + + L CSH L+ G+ +
Sbjct: 380 AMISAY---GF--SGRGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFK 434
Query: 197 LVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEK 256
L+ D +TP + AC M+ + GK ++
Sbjct: 435 LM------TDHYKITPRLEHL--------AC----------------MVDLLGRAGKVKE 464
Query: 257 ALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIA-AKPDHYTCM 315
A R ++D M+P+ + ALL AC D+G+ D + + +A + +Y +
Sbjct: 465 AYRF---IQDMSMEPNERVWGALLGACRVHSDTDIGLLAADKL---FQLAPEQSGYYVLL 518
Query: 316 VDLLGRAGKLVEAV---DLIKKMPFKPQPA--------IFGTLLSACRVHKRLD 358
++ +AG+ E +++K K P I T L R H + D
Sbjct: 519 SNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVGDRSHPQSD 572
Score = 53.9 bits (128), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 70/144 (48%), Gaps = 1/144 (0%)
Query: 192 KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQH 251
+ VH + L +++ L+ Y D+ A K+F EI ++V+ N MI Y +
Sbjct: 59 RTVHSRIILEDLRCNSSLGVKLMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNN 118
Query: 252 GKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDH 311
G + +++F M ++PD TF +L AC+ +G + +G + S G+++
Sbjct: 119 GFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGS-ATKVGLSSTLFV 177
Query: 312 YTCMVDLLGRAGKLVEAVDLIKKM 335
+V + G+ G L EA ++ +M
Sbjct: 178 GNGLVSMYGKCGFLSEARLVLDEM 201
>sp|Q9LTF4|PP429_ARATH Putative pentatricopeptide repeat-containing protein At5g52630
OS=Arabidopsis thaliana GN=PCMP-H52 PE=3 SV=1
Length = 588
Score = 375 bits (963), Expect = e-103, Method: Compositional matrix adjust.
Identities = 192/441 (43%), Positives = 276/441 (62%), Gaps = 7/441 (1%)
Query: 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI 164
S+++ Y +CG++ A ++F P ++VV W+ M+ GY + G EN E+ L L + +
Sbjct: 155 SSLVDMYAKCGEIVYARKMFDEMPQRNVVTWSGMMYGYAQMG--EN---EEALWLFKEAL 209
Query: 165 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 224
+ N S SSV+ C++ + L+LG+Q+H L KS + + L+S+Y KCG E
Sbjct: 210 FENLAVNDYSFSSVISVCANSTLLELGRQIHGLSIKSSFDSSSFVGSSLVSLYSKCGVPE 269
Query: 225 DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 284
A ++F E+ K++ WNAM+ YAQH +K + LF +MK GMKP+ ITF+ +L AC+
Sbjct: 270 GAYQVFNEVPVKNLGIWNAMLKAYAQHSHTQKVIELFKRMKLSGMKPNFITFLNVLNACS 329
Query: 285 HAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIF 344
HAGLVD G YFD M + I HY +VD+LGRAG+L EA+++I MP P +++
Sbjct: 330 HAGLVDEGRYYFDQM-KESRIEPTDKHYASLVDMLGRAGRLQEALEVITNMPIDPTESVW 388
Query: 345 GTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKE 404
G LL++C VHK +LA FAA +F L P ++G ++ L+N YAA +++D A+ R +++
Sbjct: 389 GALLTSCTVHKNTELAAFAADKVFELGPV-SSGMHISLSNAYAADGRFEDAAKARKLLRD 447
Query: 405 NNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHA 464
K G SW+E VH F +G+R H + I+EKL EL + M+ AGY+ D + L
Sbjct: 448 RGEKKETGLSWVEERNKVHTFAAGERRHEKSKEIYEKLAELGEEMEKAGYIADTSYVLRE 507
Query: 465 VGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREII 524
V + K Q + +HSE+LAIAFGLI P PIRV KNLRVCGDCH A K++S +R II
Sbjct: 508 VDGDEKNQTIRYHSERLAIAFGLITFPADRPIRVMKNLRVCGDCHNAIKFMSVCTRRVII 567
Query: 525 VRDTTRFHHFKDGTCSCGDYW 545
VRD RFH F+DG CSC DYW
Sbjct: 568 VRDNNRFHRFEDGKCSCNDYW 588
Score = 93.2 bits (230), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 84/148 (56%)
Query: 147 YVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKD 206
+ +N L+ L+ M+ +RP+ L S C+ LS +G+ VH L K+ D
Sbjct: 91 FAQNELPWMSLEFLKKMMAGNLRPDDHVLPSATKSCAILSRCDIGRSVHCLSMKTGYDAD 150
Query: 207 TTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKD 266
+ L+ MY KCG++ A K+F E+ +++VVTW+ M+ GYAQ G+ E+AL LF +
Sbjct: 151 VFVGSSLVDMYAKCGEIVYARKMFDEMPQRNVVTWSGMMYGYAQMGENEEALWLFKEALF 210
Query: 267 EGMKPDSITFVALLLACNHAGLVDLGIQ 294
E + + +F +++ C ++ L++LG Q
Sbjct: 211 ENLAVNDYSFSSVISVCANSTLLELGRQ 238
Score = 36.6 bits (83), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 72/166 (43%), Gaps = 1/166 (0%)
Query: 171 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 230
N + + +LL + S G Q+H V KS L LI+ Y K D+ + F
Sbjct: 14 NYNQICDLLLSSARTRSTIKGLQLHGYVVKSGLSLIPLVANNLINFYSKSQLPFDSRRAF 73
Query: 231 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVD 290
+ +K TW+++IS +AQ+ +L KM ++PD + +C D
Sbjct: 74 EDSPQKSSTTWSSIISCFAQNELPWMSLEFLKKMMAGNLRPDDHVLPSATKSCAILSRCD 133
Query: 291 LGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 336
+G + + G A + +VD+ + G++V A + +MP
Sbjct: 134 IG-RSVHCLSMKTGYDADVFVGSSLVDMYAKCGEIVYARKMFDEMP 178
>sp|Q9FI80|PP425_ARATH Pentatricopeptide repeat-containing protein At5g48910
OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1
Length = 646
Score = 375 bits (963), Expect = e-103, Method: Compositional matrix adjust.
Identities = 193/444 (43%), Positives = 272/444 (61%), Gaps = 6/444 (1%)
Query: 102 VSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLR 161
V W+ MI GY+ G A LF +SVV+W MISGY G+ + D +++ R
Sbjct: 209 VLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFK-----DAVEVFR 263
Query: 162 MMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCG 221
M IRPN +L SVL S L SL+LG+ +H S + D + LI MY KCG
Sbjct: 264 EMKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCG 323
Query: 222 DLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLL 281
+E A +F + R++V+TW+AMI+G+A HG+ A+ F KM+ G++P + ++ LL
Sbjct: 324 IIEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLT 383
Query: 282 ACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQP 341
AC+H GLV+ G +YF MV+ G+ + +HY CMVDLLGR+G L EA + I MP KP
Sbjct: 384 ACSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKPDD 443
Query: 342 AIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLS 401
I+ LL ACR+ +++ + A L ++ P ++ G YV L+N+YA+ W +V+ +RL
Sbjct: 444 VIWKALLGACRMQGNVEMGKRVANILMDMVPHDS-GAYVALSNMYASQGNWSEVSEMRLR 502
Query: 402 MKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFA 461
MKE ++ K PG S I++ V+HEF D HP+ I+ L E+ +++LAGY P
Sbjct: 503 MKEKDIRKDPGCSLIDIDGVLHEFVVEDDSHPKAKEINSMLVEISDKLRLAGYRPITTQV 562
Query: 462 LHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKR 521
L + EE KE +L +HSEK+A AFGLI G PIR+ KNLR+C DCH + K IS + KR
Sbjct: 563 LLNLEEEDKENVLHYHSEKIATAFGLISTSPGKPIRIVKNLRICEDCHSSIKLISKVYKR 622
Query: 522 EIIVRDTTRFHHFKDGTCSCGDYW 545
+I VRD RFHHF+DG+CSC DYW
Sbjct: 623 KITVRDRKRFHHFQDGSCSCMDYW 646
Score = 94.0 bits (232), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 79/349 (22%), Positives = 148/349 (42%), Gaps = 84/349 (24%)
Query: 81 VQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMIS 140
+ +++ A +F MP++N SW+ +I G+ E + DKA ++A T
Sbjct: 70 LHHRDLDYAHKIFNQMPQRNCFSWNTIIRGFSESDE-DKA-----------LIAITL--- 114
Query: 141 GYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK 200
MM + PN + SVL C+ +Q GKQ+H L K
Sbjct: 115 ------------------FYEMMSDEFVEPNRFTFPSVLKACAKTGKIQEGKQIHGLALK 156
Query: 201 SPLCKDTTALTPLISMYCKCGDLEDA---------------------------------- 226
D ++ L+ MY CG ++DA
Sbjct: 157 YGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMTDRRKRDGEIVLWNVMID 216
Query: 227 -------CK----LFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSIT 275
CK LF +++++ VV+WN MISGY+ +G + A+ +F +MK ++P+ +T
Sbjct: 217 GYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMKKGDIRPNYVT 276
Query: 276 FVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335
V++L A + G ++LG ++ D GI + ++D+ + G + +A+ + +++
Sbjct: 277 LVSVLPAISRLGSLELG-EWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIHVFERL 335
Query: 336 PFKPQPAIFGTLLSACRVHKRLDLAE--FAAMNLFNLNPANAAGCYVQL 382
P + + +++ +H + A F M + P++ A Y+ L
Sbjct: 336 P-RENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVA--YINL 381
Score = 86.3 bits (212), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 78/283 (27%), Positives = 137/283 (48%), Gaps = 18/283 (6%)
Query: 7 VNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNS--DDVVAAFDFFQR 64
V WN ++ G+ + G K A+ LFDK+ Q VVS+N M+S LN D V F ++
Sbjct: 209 VLWNVMIDGYMRL-GDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMKK 267
Query: 65 LPIK-DTASWNTMISGFVQKKNMAKARDLFLAMPEK----NSVSWSAMISGYIECGQLDK 119
I+ + + +++ + ++ L L + + V SA+I Y +CG ++K
Sbjct: 268 GDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEK 327
Query: 120 AVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVL 179
A+ +F+ P ++V+ W+AMI+G+ G A D + M G+RP+ + ++L
Sbjct: 328 AIHVFERLPRENVITWSAMINGFAIHGQ-----AGDAIDCFCKMRQAGVRPSDVAYINLL 382
Query: 180 LGCSHLSSLQLGKQ-VHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK-D 237
CSH ++ G++ Q+V L ++ + + G L++A + L + K D
Sbjct: 383 TACSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKPD 442
Query: 238 VVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKP-DSITFVAL 279
V W A++ G E R+ + + D M P DS +VAL
Sbjct: 443 DVIWKALLGACRMQGNVEMGKRVANILMD--MVPHDSGAYVAL 483
Score = 52.4 bits (124), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 58/110 (52%), Gaps = 9/110 (8%)
Query: 193 QVHQLVFKSPLCKDTTALTPLISMYCKCGDLED-----ACKLFLEIQRKDVVTWNAMISG 247
Q+H + KS +DT A ++ +C DL A K+F ++ +++ +WN +I G
Sbjct: 41 QIHAVFIKSGQMRDTLAAAEILR-FCATSDLHHRDLDYAHKIFNQMPQRNCFSWNTIIRG 99
Query: 248 YAQ--HGKGEKALRLF-DKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ 294
+++ K A+ LF + M DE ++P+ TF ++L AC G + G Q
Sbjct: 100 FSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKACAKTGKIQEGKQ 149
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.137 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 201,616,432
Number of Sequences: 539616
Number of extensions: 8231952
Number of successful extensions: 27231
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 409
Number of HSP's successfully gapped in prelim test: 44
Number of HSP's that attempted gapping in prelim test: 19251
Number of HSP's gapped (non-prelim): 2281
length of query: 545
length of database: 191,569,459
effective HSP length: 122
effective length of query: 423
effective length of database: 125,736,307
effective search space: 53186457861
effective search space used: 53186457861
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 64 (29.3 bits)