Query 009066
Match_columns 545
No_of_seqs 699 out of 4327
Neff 10.5
Searched_HMMs 46136
Date Thu Mar 28 20:00:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009066.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009066hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03081 pentatricopeptide (PP 100.0 5E-112 1E-116 905.2 59.7 535 3-545 155-697 (697)
2 PLN03077 Protein ECB2; Provisi 100.0 2E-106 3E-111 882.9 60.1 530 3-543 320-857 (857)
3 PLN03077 Protein ECB2; Provisi 100.0 1.3E-65 2.7E-70 561.0 39.4 499 3-521 118-654 (857)
4 PLN03218 maturation of RBCL 1; 100.0 1.8E-60 3.9E-65 511.6 44.5 503 4-523 368-911 (1060)
5 PLN03081 pentatricopeptide (PP 100.0 5.5E-59 1.2E-63 497.2 41.1 478 35-538 84-581 (697)
6 PLN03218 maturation of RBCL 1; 100.0 3.8E-56 8.2E-61 478.2 46.4 401 3-411 403-847 (1060)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 4E-25 8.7E-30 246.1 43.5 390 3-407 462-868 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 4.8E-25 1E-29 245.5 43.0 387 4-405 429-832 (899)
9 PF14432 DYW_deaminase: DYW fa 100.0 7.6E-29 1.7E-33 196.5 7.4 106 412-535 2-116 (116)
10 PRK11788 tetratricopeptide rep 99.9 4.2E-20 9.2E-25 185.3 30.0 294 110-413 44-355 (389)
11 KOG4626 O-linked N-acetylgluco 99.9 3.4E-20 7.4E-25 178.3 26.1 350 40-404 118-484 (966)
12 KOG4626 O-linked N-acetylgluco 99.9 2.2E-20 4.7E-25 179.7 24.5 382 5-402 115-516 (966)
13 TIGR00990 3a0801s09 mitochondr 99.9 1.8E-18 4E-23 182.8 41.3 389 9-405 130-571 (615)
14 PRK11447 cellulose synthase su 99.9 3.1E-18 6.7E-23 192.8 43.3 380 13-408 276-744 (1157)
15 PRK11788 tetratricopeptide rep 99.9 4.5E-19 9.7E-24 177.9 31.9 280 81-369 46-346 (389)
16 PRK15174 Vi polysaccharide exp 99.8 1.5E-17 3.3E-22 175.4 37.2 348 17-376 16-387 (656)
17 PRK11447 cellulose synthase su 99.8 3.3E-17 7.2E-22 184.5 41.3 315 77-403 276-664 (1157)
18 PRK10049 pgaA outer membrane p 99.8 2.1E-16 4.5E-21 170.3 40.2 384 10-405 19-456 (765)
19 PRK15174 Vi polysaccharide exp 99.8 1.3E-16 2.7E-21 168.5 37.6 341 53-405 19-381 (656)
20 PRK10049 pgaA outer membrane p 99.8 3.9E-16 8.4E-21 168.3 40.8 367 3-376 46-462 (765)
21 PRK09782 bacteriophage N4 rece 99.8 1.5E-14 3.2E-19 156.5 43.5 382 8-406 184-707 (987)
22 TIGR00990 3a0801s09 mitochondr 99.8 2.1E-15 4.4E-20 159.7 35.6 349 43-405 132-537 (615)
23 PRK14574 hmsH outer membrane p 99.8 2.9E-14 6.3E-19 151.1 43.6 386 13-405 41-513 (822)
24 PRK09782 bacteriophage N4 rece 99.7 2.9E-14 6.3E-19 154.2 40.9 388 4-408 245-743 (987)
25 PRK14574 hmsH outer membrane p 99.7 3.7E-13 8E-18 142.8 39.0 368 11-384 73-525 (822)
26 KOG2003 TPR repeat-containing 99.7 2.1E-14 4.5E-19 134.0 22.3 205 184-393 502-711 (840)
27 KOG2002 TPR-containing nuclear 99.6 3.3E-13 7.2E-18 137.4 28.0 395 1-405 265-745 (1018)
28 PF13429 TPR_15: Tetratricopep 99.6 3.3E-15 7.1E-20 142.2 10.8 251 148-403 19-275 (280)
29 KOG2076 RNA polymerase III tra 99.6 4.3E-12 9.2E-17 128.7 31.1 327 80-415 149-522 (895)
30 KOG1915 Cell cycle control pro 99.6 1.4E-11 3E-16 116.2 30.0 384 19-416 86-511 (677)
31 PRK10747 putative protoheme IX 99.5 1E-11 2.3E-16 123.7 28.7 274 114-403 97-388 (398)
32 KOG4422 Uncharacterized conser 99.5 6.1E-11 1.3E-15 110.6 30.4 391 5-407 115-592 (625)
33 KOG2002 TPR-containing nuclear 99.5 4.3E-11 9.4E-16 122.3 31.9 355 40-407 272-677 (1018)
34 KOG1155 Anaphase-promoting com 99.5 1.1E-10 2.4E-15 110.1 31.8 316 79-404 173-494 (559)
35 KOG1126 DNA-binding cell divis 99.5 2.9E-12 6.4E-17 126.0 21.8 196 204-405 418-620 (638)
36 PRK10747 putative protoheme IX 99.5 7.4E-11 1.6E-15 117.7 31.3 277 83-371 97-391 (398)
37 KOG2003 TPR repeat-containing 99.5 1E-11 2.2E-16 116.3 22.7 253 147-405 429-689 (840)
38 TIGR00540 hemY_coli hemY prote 99.5 1.1E-10 2.4E-15 117.1 31.5 277 82-368 96-397 (409)
39 KOG0547 Translocase of outer m 99.5 1.3E-10 2.7E-15 110.3 28.7 215 182-403 336-564 (606)
40 KOG1126 DNA-binding cell divis 99.5 7.7E-12 1.7E-16 123.1 20.3 246 150-405 332-586 (638)
41 KOG4422 Uncharacterized conser 99.5 4.1E-10 9E-15 105.1 30.3 330 27-370 197-590 (625)
42 PF13429 TPR_15: Tetratricopep 99.5 4.2E-13 9.1E-18 127.7 11.2 251 106-369 13-276 (280)
43 TIGR00540 hemY_coli hemY prote 99.4 7.4E-11 1.6E-15 118.3 27.5 251 148-401 95-360 (409)
44 KOG0495 HAT repeat protein [RN 99.4 8.3E-10 1.8E-14 108.3 32.0 362 40-418 518-891 (913)
45 KOG1155 Anaphase-promoting com 99.4 4.4E-09 9.5E-14 99.5 34.6 337 53-402 178-533 (559)
46 COG2956 Predicted N-acetylgluc 99.4 3.7E-10 8.1E-15 101.9 25.1 259 53-350 49-324 (389)
47 COG2956 Predicted N-acetylgluc 99.4 7.3E-10 1.6E-14 100.0 26.6 258 20-319 49-325 (389)
48 KOG0495 HAT repeat protein [RN 99.4 6.6E-09 1.4E-13 102.2 34.4 271 133-417 517-792 (913)
49 TIGR02521 type_IV_pilW type IV 99.4 1.8E-10 3.9E-15 106.3 22.8 196 207-404 31-231 (234)
50 KOG2076 RNA polymerase III tra 99.4 3E-09 6.4E-14 108.5 31.8 345 53-404 153-554 (895)
51 KOG1173 Anaphase-promoting com 99.3 4.1E-09 9E-14 102.1 30.1 251 148-404 255-517 (611)
52 COG3071 HemY Uncharacterized e 99.3 4.1E-09 8.9E-14 98.2 28.7 251 149-404 96-389 (400)
53 PRK12370 invasion protein regu 99.3 7.6E-10 1.6E-14 115.3 26.8 263 131-406 255-536 (553)
54 KOG1915 Cell cycle control pro 99.3 2E-08 4.3E-13 95.3 32.6 399 4-418 105-546 (677)
55 KOG4318 Bicoid mRNA stability 99.3 1.2E-10 2.6E-15 117.8 18.0 263 158-461 11-274 (1088)
56 PF13041 PPR_2: PPR repeat fam 99.3 8.6E-12 1.9E-16 83.8 6.8 50 236-285 1-50 (50)
57 KOG2047 mRNA splicing factor [ 99.3 5.5E-08 1.2E-12 95.7 33.3 393 7-404 103-686 (835)
58 COG3071 HemY Uncharacterized e 99.3 2.6E-08 5.7E-13 92.9 29.2 275 83-369 97-389 (400)
59 KOG1840 Kinesin light chain [C 99.2 1.8E-09 3.8E-14 107.6 22.4 231 172-403 199-477 (508)
60 TIGR02521 type_IV_pilW type IV 99.2 4E-09 8.8E-14 97.2 23.8 196 173-371 32-233 (234)
61 PF13041 PPR_2: PPR repeat fam 99.2 2.8E-11 6E-16 81.3 5.9 50 130-184 1-50 (50)
62 KOG1174 Anaphase-promoting com 99.2 6.1E-08 1.3E-12 90.6 29.0 360 5-376 96-506 (564)
63 KOG4318 Bicoid mRNA stability 99.2 2.1E-08 4.5E-13 102.0 26.8 104 310-415 492-603 (1088)
64 KOG1173 Anaphase-promoting com 99.2 3.8E-08 8.2E-13 95.6 27.5 269 99-376 242-524 (611)
65 PRK12370 invasion protein regu 99.2 3.9E-09 8.5E-14 110.0 22.9 247 115-372 275-537 (553)
66 KOG1840 Kinesin light chain [C 99.1 8.5E-09 1.9E-13 102.8 21.0 231 134-369 201-478 (508)
67 PRK11189 lipoprotein NlpI; Pro 99.1 1.6E-08 3.5E-13 96.6 22.0 211 186-406 40-266 (296)
68 PRK11189 lipoprotein NlpI; Pro 99.1 5.2E-08 1.1E-12 93.1 25.3 230 148-385 37-280 (296)
69 KOG1129 TPR repeat-containing 99.1 6E-09 1.3E-13 94.2 17.0 226 137-405 228-458 (478)
70 KOG0547 Translocase of outer m 99.1 1.4E-07 3.1E-12 90.0 26.4 334 45-405 122-491 (606)
71 KOG2376 Signal recognition par 99.1 1.2E-06 2.6E-11 85.8 33.1 377 12-402 18-517 (652)
72 KOG1129 TPR repeat-containing 99.1 7.4E-09 1.6E-13 93.6 15.9 196 206-406 222-425 (478)
73 KOG4162 Predicted calmodulin-b 99.0 1.7E-06 3.7E-11 87.4 31.9 247 154-405 461-783 (799)
74 KOG1174 Anaphase-promoting com 99.0 2.2E-06 4.8E-11 80.4 30.1 261 131-404 231-499 (564)
75 KOG1125 TPR repeat-containing 99.0 1.1E-08 2.5E-13 99.6 14.9 219 182-404 295-526 (579)
76 KOG2047 mRNA splicing factor [ 99.0 3.4E-06 7.4E-11 83.5 30.9 363 23-401 91-536 (835)
77 COG3063 PilF Tfp pilus assembl 98.9 1.5E-07 3.1E-12 81.7 18.2 163 241-407 38-204 (250)
78 COG3063 PilF Tfp pilus assembl 98.9 1.1E-06 2.4E-11 76.3 21.1 195 178-375 41-241 (250)
79 PF12569 NARP1: NMDA receptor- 98.9 1.3E-06 2.7E-11 88.6 24.7 95 312-407 197-293 (517)
80 KOG0624 dsRNA-activated protei 98.9 4.7E-06 1E-10 76.4 25.6 304 44-376 44-376 (504)
81 PF04733 Coatomer_E: Coatomer 98.8 9.9E-08 2.1E-12 89.9 15.2 240 149-404 13-264 (290)
82 cd05804 StaR_like StaR_like; a 98.8 9.5E-06 2.1E-10 80.2 29.4 296 101-406 6-337 (355)
83 PF12569 NARP1: NMDA receptor- 98.8 6.9E-06 1.5E-10 83.3 28.0 301 78-403 12-332 (517)
84 cd05804 StaR_like StaR_like; a 98.7 2.1E-05 4.6E-10 77.7 29.2 191 177-369 119-335 (355)
85 KOG3785 Uncharacterized conser 98.7 5.6E-06 1.2E-10 76.2 22.3 77 19-97 35-118 (557)
86 PF04733 Coatomer_E: Coatomer 98.7 5.3E-07 1.2E-11 85.0 16.4 154 215-375 110-270 (290)
87 KOG1156 N-terminal acetyltrans 98.7 4.2E-05 9.1E-10 76.2 29.4 388 3-406 5-469 (700)
88 KOG4340 Uncharacterized conser 98.7 2.3E-05 5E-10 70.6 25.1 379 9-404 13-442 (459)
89 KOG3616 Selective LIM binding 98.7 1.7E-05 3.7E-10 79.6 26.3 189 182-400 742-932 (1636)
90 KOG0985 Vesicle coat protein c 98.7 0.0001 2.2E-09 76.8 32.4 246 79-355 1057-1327(1666)
91 KOG1070 rRNA processing protei 98.7 3.5E-06 7.5E-11 90.2 22.5 200 204-408 1455-1666(1710)
92 KOG3616 Selective LIM binding 98.7 1.5E-05 3.2E-10 80.1 24.9 224 12-263 621-849 (1636)
93 PRK04841 transcriptional regul 98.7 3.8E-05 8.3E-10 86.1 31.9 353 48-406 351-761 (903)
94 PRK04841 transcriptional regul 98.7 8.5E-05 1.8E-09 83.3 34.2 354 11-373 346-763 (903)
95 KOG0548 Molecular co-chaperone 98.6 2.4E-05 5.3E-10 76.2 25.1 370 16-405 12-455 (539)
96 TIGR03302 OM_YfiO outer membra 98.6 3.9E-06 8.5E-11 77.6 18.6 181 206-405 32-232 (235)
97 PF12854 PPR_1: PPR repeat 98.6 7.4E-08 1.6E-12 58.0 4.1 33 202-234 2-34 (34)
98 KOG1156 N-terminal acetyltrans 98.6 0.00017 3.6E-09 72.0 29.3 371 19-401 54-495 (700)
99 KOG4340 Uncharacterized conser 98.6 1.1E-05 2.4E-10 72.6 19.2 298 73-401 13-335 (459)
100 KOG2376 Signal recognition par 98.6 0.00022 4.7E-09 70.5 29.2 336 45-402 19-402 (652)
101 PLN02789 farnesyltranstransfer 98.6 2.4E-05 5.2E-10 74.9 22.6 176 210-389 74-268 (320)
102 PRK10370 formate-dependent nit 98.5 6.4E-06 1.4E-10 73.3 17.0 118 286-406 52-174 (198)
103 KOG1070 rRNA processing protei 98.5 2.3E-05 5E-10 84.2 23.5 235 160-398 1447-1693(1710)
104 KOG4162 Predicted calmodulin-b 98.5 0.00025 5.4E-09 72.3 29.1 93 312-405 653-749 (799)
105 PRK15359 type III secretion sy 98.5 4.2E-06 9.1E-11 70.4 14.0 122 259-387 14-137 (144)
106 KOG3617 WD40 and TPR repeat-co 98.5 8.2E-05 1.8E-09 75.9 24.3 238 35-299 723-993 (1416)
107 TIGR03302 OM_YfiO outer membra 98.5 1.6E-05 3.4E-10 73.6 18.5 181 170-372 31-234 (235)
108 PF12854 PPR_1: PPR repeat 98.5 3.2E-07 6.9E-12 55.3 4.4 32 304-335 2-33 (34)
109 KOG1127 TPR repeat-containing 98.4 3.1E-05 6.6E-10 80.6 20.8 372 8-401 494-909 (1238)
110 KOG1914 mRNA cleavage and poly 98.4 0.0013 2.9E-08 64.5 30.4 395 2-402 16-536 (656)
111 KOG0985 Vesicle coat protein c 98.4 0.00013 2.7E-09 76.2 24.5 157 221-401 1089-1245(1666)
112 PRK10370 formate-dependent nit 98.4 2.5E-05 5.5E-10 69.5 17.5 152 214-376 23-179 (198)
113 PRK15359 type III secretion sy 98.4 9.5E-06 2.1E-10 68.3 13.8 95 311-406 26-122 (144)
114 KOG3617 WD40 and TPR repeat-co 98.4 0.00046 9.9E-09 70.7 27.4 69 53-126 814-883 (1416)
115 KOG1127 TPR repeat-containing 98.4 3.2E-05 6.9E-10 80.5 19.6 340 53-404 472-878 (1238)
116 KOG0548 Molecular co-chaperone 98.4 0.0003 6.6E-09 68.8 25.2 366 1-388 31-472 (539)
117 KOG3785 Uncharacterized conser 98.4 0.00066 1.4E-08 63.0 26.0 150 223-375 339-495 (557)
118 KOG1125 TPR repeat-containing 98.4 2E-05 4.3E-10 77.5 17.2 222 148-373 296-530 (579)
119 PRK15179 Vi polysaccharide bio 98.4 3.7E-05 8.1E-10 81.0 20.6 191 175-382 31-228 (694)
120 KOG0624 dsRNA-activated protei 98.4 0.00036 7.7E-09 64.5 24.0 300 11-335 43-367 (504)
121 PLN02789 farnesyltranstransfer 98.4 0.00021 4.6E-09 68.4 23.9 200 148-353 48-267 (320)
122 COG5010 TadD Flp pilus assembl 98.4 7E-05 1.5E-09 66.7 18.7 154 242-399 70-225 (257)
123 COG5010 TadD Flp pilus assembl 98.3 4.6E-05 9.9E-10 67.9 16.6 134 270-406 63-198 (257)
124 PRK15363 pathogenicity island 98.3 1.4E-05 2.9E-10 66.4 12.3 119 309-451 35-155 (157)
125 KOG1128 Uncharacterized conser 98.3 4E-05 8.7E-10 77.4 17.7 194 203-404 394-615 (777)
126 PRK15179 Vi polysaccharide bio 98.3 0.00022 4.7E-09 75.4 23.5 142 203-348 82-229 (694)
127 KOG2053 Mitochondrial inherita 98.3 0.0068 1.5E-07 63.2 33.1 380 20-410 23-507 (932)
128 KOG1128 Uncharacterized conser 98.3 4.1E-05 9E-10 77.3 16.7 156 240-408 400-585 (777)
129 KOG3060 Uncharacterized conser 98.2 0.00026 5.7E-09 62.7 18.9 169 211-383 56-232 (289)
130 PRK14720 transcript cleavage f 98.2 0.00027 5.8E-09 75.6 22.3 212 133-387 32-268 (906)
131 COG4783 Putative Zn-dependent 98.2 0.00024 5.2E-09 68.9 19.4 177 222-404 252-436 (484)
132 TIGR00756 PPR pentatricopeptid 98.2 3.1E-06 6.7E-11 51.7 4.5 34 239-272 1-34 (35)
133 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 0.00011 2.3E-09 71.9 17.0 126 211-339 173-298 (395)
134 TIGR02552 LcrH_SycD type III s 98.2 3E-05 6.5E-10 64.6 11.7 96 309-405 17-114 (135)
135 KOG1914 mRNA cleavage and poly 98.1 0.011 2.3E-07 58.4 32.0 364 36-404 18-500 (656)
136 COG4783 Putative Zn-dependent 98.1 0.0007 1.5E-08 65.8 21.4 146 238-406 306-455 (484)
137 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 5.3E-05 1.1E-09 74.0 14.0 122 276-403 172-295 (395)
138 PRK14720 transcript cleavage f 98.1 0.0019 4.1E-08 69.3 25.6 234 68-352 29-268 (906)
139 TIGR00756 PPR pentatricopeptid 98.1 5.9E-06 1.3E-10 50.4 4.1 35 133-172 1-35 (35)
140 TIGR02552 LcrH_SycD type III s 98.1 0.00016 3.5E-09 60.2 14.2 113 260-376 5-120 (135)
141 PF13812 PPR_3: Pentatricopept 98.0 1.2E-05 2.6E-10 48.6 4.5 33 239-271 2-34 (34)
142 KOG3081 Vesicle coat complex C 98.0 0.0072 1.6E-07 54.3 23.1 157 212-375 113-276 (299)
143 KOG3081 Vesicle coat complex C 97.9 0.0047 1E-07 55.4 20.9 167 160-335 96-268 (299)
144 COG5107 RNA14 Pre-mRNA 3'-end 97.9 0.015 3.2E-07 56.1 25.3 134 239-375 398-536 (660)
145 PF13812 PPR_3: Pentatricopept 97.9 2.2E-05 4.7E-10 47.5 3.9 33 133-170 2-34 (34)
146 PF09976 TPR_21: Tetratricopep 97.8 0.00067 1.5E-08 57.2 13.9 114 286-401 24-143 (145)
147 cd00189 TPR Tetratricopeptide 97.8 0.00023 4.9E-09 54.4 9.9 92 312-404 3-96 (100)
148 PF01535 PPR: PPR repeat; Int 97.8 3.4E-05 7.3E-10 45.5 3.4 31 239-269 1-31 (31)
149 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.00056 1.2E-08 55.3 11.9 99 277-375 6-110 (119)
150 PF09976 TPR_21: Tetratricopep 97.8 0.0023 5E-08 53.9 15.9 116 251-367 24-144 (145)
151 TIGR02795 tol_pal_ybgF tol-pal 97.7 0.00043 9.4E-09 56.0 10.7 96 310-406 3-106 (119)
152 PF12895 Apc3: Anaphase-promot 97.7 3.5E-05 7.5E-10 58.1 3.6 57 343-401 27-83 (84)
153 KOG3060 Uncharacterized conser 97.7 0.006 1.3E-07 54.3 17.3 161 241-406 55-221 (289)
154 PLN03088 SGT1, suppressor of 97.7 0.00063 1.4E-08 66.7 12.7 100 280-382 9-110 (356)
155 cd00189 TPR Tetratricopeptide 97.6 0.00074 1.6E-08 51.5 10.6 59 241-300 3-61 (100)
156 PF01535 PPR: PPR repeat; Int 97.6 8.2E-05 1.8E-09 43.7 3.5 30 133-167 1-30 (31)
157 PRK10153 DNA-binding transcrip 97.6 0.0039 8.5E-08 64.0 17.8 138 236-375 335-487 (517)
158 PF13414 TPR_11: TPR repeat; P 97.6 0.00013 2.8E-09 52.5 5.2 64 340-404 2-66 (69)
159 PRK02603 photosystem I assembl 97.6 0.0008 1.7E-08 58.7 11.0 82 309-391 35-121 (172)
160 PLN03088 SGT1, suppressor of 97.6 0.0013 2.8E-08 64.6 13.3 102 244-348 8-110 (356)
161 KOG0550 Molecular chaperone (D 97.6 0.0025 5.5E-08 60.5 14.3 153 246-405 177-350 (486)
162 CHL00033 ycf3 photosystem I as 97.6 0.0008 1.7E-08 58.4 10.7 95 307-402 33-139 (168)
163 PF14938 SNAP: Soluble NSF att 97.6 0.036 7.7E-07 52.6 22.7 97 240-336 157-264 (282)
164 KOG2053 Mitochondrial inherita 97.6 0.051 1.1E-06 57.1 24.5 215 114-335 22-252 (932)
165 PF05843 Suf: Suppressor of fo 97.5 0.0032 7E-08 59.5 14.8 143 239-386 2-150 (280)
166 PF07079 DUF1347: Protein of u 97.5 0.11 2.3E-06 50.6 26.4 375 17-402 17-521 (549)
167 PF13432 TPR_16: Tetratricopep 97.5 0.00028 6.1E-09 50.1 5.8 57 347-404 3-59 (65)
168 KOG2041 WD40 repeat protein [G 97.5 0.032 6.8E-07 56.8 21.6 211 131-370 851-1086(1189)
169 CHL00033 ycf3 photosystem I as 97.5 0.009 1.9E-07 51.8 15.9 81 238-320 35-117 (168)
170 PF04840 Vps16_C: Vps16, C-ter 97.4 0.12 2.6E-06 49.5 25.4 108 211-335 181-288 (319)
171 PRK02603 photosystem I assembl 97.4 0.0073 1.6E-07 52.6 14.9 131 237-391 34-166 (172)
172 PF12895 Apc3: Anaphase-promot 97.4 0.00074 1.6E-08 50.8 7.4 81 251-334 2-83 (84)
173 KOG0553 TPR repeat-containing 97.4 0.0019 4.1E-08 59.0 11.0 92 283-376 91-184 (304)
174 PF04840 Vps16_C: Vps16, C-ter 97.4 0.14 3.1E-06 49.0 25.7 112 273-402 177-288 (319)
175 KOG0553 TPR repeat-containing 97.4 0.00057 1.2E-08 62.3 7.1 87 317-404 89-177 (304)
176 COG4235 Cytochrome c biogenesi 97.3 0.0042 9.1E-08 57.1 12.6 101 306-407 153-258 (287)
177 PRK15363 pathogenicity island 97.3 0.0028 6.1E-08 52.8 10.2 98 28-126 24-128 (157)
178 PF08579 RPM2: Mitochondrial r 97.3 0.005 1.1E-07 47.6 10.2 81 240-321 27-116 (120)
179 PRK15331 chaperone protein Sic 97.3 0.0047 1E-07 51.8 10.9 90 314-404 42-133 (165)
180 PF14559 TPR_19: Tetratricopep 97.3 0.00034 7.3E-09 50.2 3.7 52 352-404 2-53 (68)
181 PF13432 TPR_16: Tetratricopep 97.2 0.0009 1.9E-08 47.4 5.9 60 315-374 3-64 (65)
182 KOG1538 Uncharacterized conser 97.2 0.048 1E-06 55.1 19.2 97 213-341 709-806 (1081)
183 PRK10866 outer membrane biogen 97.2 0.076 1.7E-06 48.9 19.6 56 279-334 181-237 (243)
184 PF05843 Suf: Suppressor of fo 97.2 0.005 1.1E-07 58.2 12.1 130 274-405 2-136 (280)
185 KOG2041 WD40 repeat protein [G 97.2 0.35 7.6E-06 49.6 27.9 192 23-238 679-909 (1189)
186 PF14938 SNAP: Soluble NSF att 97.2 0.02 4.4E-07 54.3 16.1 116 245-375 101-230 (282)
187 PF12688 TPR_5: Tetratrico pep 97.2 0.015 3.2E-07 46.7 12.7 93 243-335 6-101 (120)
188 PF10037 MRP-S27: Mitochondria 97.2 0.0054 1.2E-07 60.5 11.9 119 167-285 61-185 (429)
189 COG3898 Uncharacterized membra 97.2 0.25 5.4E-06 47.2 25.7 283 104-404 85-391 (531)
190 PF10037 MRP-S27: Mitochondria 97.1 0.013 2.8E-07 57.9 14.4 97 133-234 67-165 (429)
191 COG4700 Uncharacterized protei 97.1 0.1 2.2E-06 44.5 17.1 133 269-404 85-221 (251)
192 PF13371 TPR_9: Tetratricopept 97.1 0.0016 3.5E-08 47.3 5.9 56 349-405 3-58 (73)
193 KOG2796 Uncharacterized conser 97.1 0.14 3E-06 46.2 18.4 127 136-267 181-315 (366)
194 PRK10153 DNA-binding transcrip 97.0 0.027 5.8E-07 58.0 16.2 134 268-406 332-483 (517)
195 PF13414 TPR_11: TPR repeat; P 97.0 0.0015 3.2E-08 47.0 5.1 65 308-372 2-69 (69)
196 COG3898 Uncharacterized membra 97.0 0.36 7.8E-06 46.1 23.0 256 134-402 84-355 (531)
197 KOG1130 Predicted G-alpha GTPa 97.0 0.0071 1.5E-07 57.5 10.4 255 148-404 28-343 (639)
198 KOG1258 mRNA processing protei 97.0 0.52 1.1E-05 47.7 26.1 182 206-391 296-490 (577)
199 COG4700 Uncharacterized protei 96.9 0.14 3E-06 43.7 16.4 114 211-329 93-213 (251)
200 KOG2280 Vacuolar assembly/sort 96.9 0.67 1.4E-05 48.1 25.0 304 73-399 440-793 (829)
201 PF06239 ECSIT: Evolutionarily 96.9 0.0055 1.2E-07 53.6 8.4 100 122-221 35-152 (228)
202 KOG2796 Uncharacterized conser 96.9 0.099 2.1E-06 47.1 16.1 138 239-376 178-321 (366)
203 PF12688 TPR_5: Tetratrico pep 96.9 0.025 5.4E-07 45.4 11.5 101 148-248 12-116 (120)
204 PF14559 TPR_19: Tetratricopep 96.9 0.0054 1.2E-07 43.8 7.1 48 286-335 4-51 (68)
205 PF08579 RPM2: Mitochondrial r 96.9 0.014 3.1E-07 45.2 9.4 80 135-219 28-116 (120)
206 PF13281 DUF4071: Domain of un 96.9 0.14 3E-06 49.7 18.4 159 212-373 146-337 (374)
207 PRK10803 tol-pal system protei 96.8 0.0089 1.9E-07 55.6 9.9 95 310-404 144-245 (263)
208 PF06239 ECSIT: Evolutionarily 96.8 0.018 3.9E-07 50.5 10.8 97 227-324 34-153 (228)
209 KOG0550 Molecular chaperone (D 96.7 0.24 5.1E-06 47.7 18.2 87 246-335 257-347 (486)
210 PLN03098 LPA1 LOW PSII ACCUMUL 96.6 0.0091 2E-07 58.4 8.3 99 306-408 72-177 (453)
211 PRK10866 outer membrane biogen 96.6 0.61 1.3E-05 43.0 20.8 54 314-367 180-238 (243)
212 PF13431 TPR_17: Tetratricopep 96.6 0.0013 2.9E-08 39.4 1.6 32 364-396 2-33 (34)
213 KOG1538 Uncharacterized conser 96.6 0.23 5E-06 50.4 17.8 225 148-407 611-848 (1081)
214 PF13371 TPR_9: Tetratricopept 96.5 0.0079 1.7E-07 43.6 6.1 61 316-376 2-64 (73)
215 PRK10803 tol-pal system protei 96.4 0.059 1.3E-06 50.2 12.5 101 275-375 145-251 (263)
216 PF13428 TPR_14: Tetratricopep 96.4 0.005 1.1E-07 39.5 3.8 42 342-384 2-43 (44)
217 KOG2280 Vacuolar assembly/sort 96.3 1.8 4E-05 45.1 25.9 301 43-366 442-795 (829)
218 PF03704 BTAD: Bacterial trans 96.3 0.056 1.2E-06 45.5 10.5 61 343-404 64-124 (146)
219 PF12921 ATP13: Mitochondrial 96.1 0.081 1.8E-06 42.9 10.3 49 269-317 48-96 (126)
220 PF13424 TPR_12: Tetratricopep 96.1 0.0072 1.6E-07 44.6 4.0 22 312-333 8-29 (78)
221 COG4235 Cytochrome c biogenesi 96.1 0.33 7.2E-06 45.0 15.1 109 272-384 155-268 (287)
222 PF12921 ATP13: Mitochondrial 96.0 0.076 1.7E-06 43.1 9.4 77 273-349 2-96 (126)
223 PF13525 YfiO: Outer membrane 96.0 1.1 2.4E-05 40.1 18.1 54 148-201 16-71 (203)
224 COG0457 NrfG FOG: TPR repeat [ 96.0 1.1 2.5E-05 40.1 23.5 199 173-373 60-268 (291)
225 KOG0543 FKBP-type peptidyl-pro 95.9 0.078 1.7E-06 50.9 10.3 62 342-404 258-319 (397)
226 PLN03098 LPA1 LOW PSII ACCUMUL 95.8 0.059 1.3E-06 53.0 9.4 61 272-335 74-138 (453)
227 PF13512 TPR_18: Tetratricopep 95.8 0.19 4.2E-06 41.3 10.9 72 317-388 18-94 (142)
228 COG0457 NrfG FOG: TPR repeat [ 95.8 1.4 3E-05 39.5 26.9 218 185-405 36-265 (291)
229 KOG0543 FKBP-type peptidyl-pro 95.6 0.15 3.2E-06 49.1 11.0 137 245-404 215-354 (397)
230 PF13424 TPR_12: Tetratricopep 95.6 0.015 3.3E-07 42.8 3.6 62 342-403 6-73 (78)
231 COG5107 RNA14 Pre-mRNA 3'-end 95.5 1.5 3.2E-05 43.0 17.2 35 2-37 38-72 (660)
232 PF09205 DUF1955: Domain of un 95.4 1.1 2.5E-05 36.0 14.4 139 250-408 14-152 (161)
233 PF13525 YfiO: Outer membrane 95.3 0.92 2E-05 40.6 14.7 56 106-166 10-71 (203)
234 PF13281 DUF4071: Domain of un 95.2 2.3 4.9E-05 41.5 17.7 162 243-406 146-335 (374)
235 PF03704 BTAD: Bacterial trans 95.1 0.29 6.2E-06 41.1 10.5 71 240-311 64-138 (146)
236 PF04053 Coatomer_WDAD: Coatom 95.0 0.54 1.2E-05 47.4 13.4 132 248-406 271-403 (443)
237 KOG4555 TPR repeat-containing 94.9 0.27 5.9E-06 39.3 8.6 91 317-407 51-146 (175)
238 KOG2610 Uncharacterized conser 94.9 0.81 1.8E-05 42.9 12.9 156 251-409 116-280 (491)
239 PF04184 ST7: ST7 protein; In 94.8 1.3 2.8E-05 44.1 15.0 58 345-402 263-321 (539)
240 KOG1585 Protein required for f 94.8 2.8 6.1E-05 37.7 15.5 197 175-399 34-250 (308)
241 KOG1130 Predicted G-alpha GTPa 94.7 0.2 4.4E-06 48.0 9.0 127 174-300 197-342 (639)
242 KOG2066 Vacuolar assembly/sort 94.7 6.8 0.00015 41.3 24.5 99 13-113 363-467 (846)
243 PF13512 TPR_18: Tetratricopep 94.5 1.4 3.1E-05 36.3 12.3 19 357-375 115-133 (142)
244 PRK11906 transcriptional regul 94.5 0.76 1.6E-05 45.5 12.6 77 326-403 321-399 (458)
245 PRK11906 transcriptional regul 94.4 2.4 5.3E-05 42.1 15.8 159 239-400 252-431 (458)
246 COG1729 Uncharacterized protei 94.3 0.31 6.7E-06 44.6 9.0 57 347-404 184-243 (262)
247 PF00515 TPR_1: Tetratricopept 94.3 0.062 1.3E-06 32.0 3.2 32 342-373 2-33 (34)
248 PF10300 DUF3808: Protein of u 94.2 2.3 5E-05 43.5 16.2 158 243-404 193-375 (468)
249 KOG3941 Intermediate in Toll s 94.2 0.46 9.9E-06 43.4 9.6 110 225-335 52-185 (406)
250 PF07719 TPR_2: Tetratricopept 94.1 0.099 2.2E-06 30.9 3.9 33 342-374 2-34 (34)
251 smart00299 CLH Clathrin heavy 94.0 3.1 6.7E-05 34.5 14.4 42 178-220 13-54 (140)
252 smart00299 CLH Clathrin heavy 93.9 3.1 6.8E-05 34.5 14.9 122 211-352 11-136 (140)
253 PRK15331 chaperone protein Sic 93.8 1.4 3.1E-05 37.2 11.2 21 315-335 111-131 (165)
254 KOG1920 IkappaB kinase complex 93.7 11 0.00023 41.9 20.2 126 221-367 894-1025(1265)
255 KOG1941 Acetylcholine receptor 93.7 1.5 3.2E-05 41.8 12.2 122 279-401 128-271 (518)
256 KOG2610 Uncharacterized conser 93.6 0.81 1.8E-05 42.9 10.2 116 285-403 115-236 (491)
257 KOG3941 Intermediate in Toll s 93.6 0.45 9.8E-06 43.4 8.4 102 121-222 54-173 (406)
258 PF04053 Coatomer_WDAD: Coatom 93.5 2.4 5.1E-05 42.9 14.5 150 53-232 275-427 (443)
259 COG3118 Thioredoxin domain-con 93.5 6.5 0.00014 36.6 16.6 164 226-393 122-289 (304)
260 KOG1464 COP9 signalosome, subu 93.5 3.9 8.4E-05 37.3 14.0 236 115-363 41-325 (440)
261 PF04184 ST7: ST7 protein; In 93.4 8.4 0.00018 38.6 17.3 98 278-375 264-380 (539)
262 KOG4555 TPR repeat-containing 93.2 0.64 1.4E-05 37.2 7.8 87 283-372 53-146 (175)
263 COG1729 Uncharacterized protei 93.0 0.99 2.1E-05 41.4 9.9 91 285-375 153-249 (262)
264 PF10300 DUF3808: Protein of u 92.8 9.2 0.0002 39.2 17.7 174 157-336 177-374 (468)
265 COG4649 Uncharacterized protei 92.7 1.7 3.6E-05 36.9 9.9 123 112-234 69-194 (221)
266 PF08631 SPO22: Meiosis protei 92.6 9.3 0.0002 36.1 23.2 16 351-366 256-271 (278)
267 KOG4234 TPR repeat-containing 92.2 0.46 9.9E-06 41.1 6.2 87 318-405 104-197 (271)
268 COG4105 ComL DNA uptake lipopr 91.7 10 0.00022 34.6 17.7 168 217-404 44-232 (254)
269 COG3118 Thioredoxin domain-con 91.5 12 0.00026 34.9 18.1 136 181-320 143-283 (304)
270 KOG1941 Acetylcholine receptor 91.4 5.1 0.00011 38.3 12.5 56 176-231 126-186 (518)
271 PF13428 TPR_14: Tetratricopep 91.3 0.43 9.3E-06 30.4 4.1 25 311-335 3-27 (44)
272 KOG2114 Vacuolar assembly/sort 91.1 15 0.00033 39.2 16.8 47 248-295 407-453 (933)
273 PRK09687 putative lyase; Provi 91.0 14 0.00031 34.9 25.9 26 346-372 240-265 (280)
274 PF13170 DUF4003: Protein of u 90.8 8.8 0.00019 36.5 14.0 127 189-318 79-226 (297)
275 PF07079 DUF1347: Protein of u 90.8 18 0.0004 35.8 24.4 40 5-45 127-174 (549)
276 PF10345 Cohesin_load: Cohesin 90.8 26 0.00056 37.5 25.5 189 3-198 27-251 (608)
277 COG3629 DnrI DNA-binding trans 90.6 1.3 2.8E-05 41.3 7.9 61 343-404 155-215 (280)
278 PF13181 TPR_8: Tetratricopept 90.5 0.35 7.5E-06 28.6 2.9 31 343-373 3-33 (34)
279 COG3629 DnrI DNA-binding trans 90.5 2.1 4.5E-05 39.9 9.2 75 208-282 154-236 (280)
280 COG4785 NlpI Lipoprotein NlpI, 90.3 13 0.00027 33.1 13.5 162 239-407 100-268 (297)
281 PF10602 RPN7: 26S proteasome 90.2 4.6 0.0001 35.1 10.8 58 209-266 38-101 (177)
282 PF13176 TPR_7: Tetratricopept 90.2 0.72 1.6E-05 27.8 4.2 26 240-265 1-26 (36)
283 PRK09687 putative lyase; Provi 90.0 17 0.00037 34.3 26.6 82 31-114 30-118 (280)
284 KOG1586 Protein required for f 89.9 14 0.00031 33.2 13.7 62 314-375 118-188 (288)
285 PF13176 TPR_7: Tetratricopept 89.8 0.42 9.1E-06 28.9 2.9 23 344-366 2-24 (36)
286 KOG1585 Protein required for f 89.7 2.7 5.9E-05 37.8 8.7 20 107-126 196-215 (308)
287 PF09205 DUF1955: Domain of un 89.2 11 0.00023 30.7 14.4 139 148-305 13-151 (161)
288 COG4649 Uncharacterized protei 89.0 9.4 0.0002 32.6 10.9 50 320-369 143-195 (221)
289 KOG1920 IkappaB kinase complex 88.7 46 0.00099 37.4 21.0 139 213-367 914-1052(1265)
290 PRK11619 lytic murein transgly 88.5 39 0.00084 36.2 32.4 136 41-186 37-177 (644)
291 TIGR02508 type_III_yscG type I 88.4 6.4 0.00014 30.0 8.6 62 108-177 46-107 (115)
292 KOG4570 Uncharacterized conser 88.4 5.4 0.00012 37.3 10.0 98 201-302 58-164 (418)
293 PF02259 FAT: FAT domain; Int 88.2 27 0.00058 34.1 20.2 150 236-388 144-304 (352)
294 PF13170 DUF4003: Protein of u 88.1 25 0.00053 33.5 15.7 149 154-304 79-252 (297)
295 PF07035 Mic1: Colon cancer-as 87.8 17 0.00036 31.2 12.6 131 157-297 14-144 (167)
296 PF09613 HrpB1_HrpK: Bacterial 87.7 16 0.00034 30.9 13.4 91 281-374 18-110 (160)
297 COG4105 ComL DNA uptake lipopr 87.7 22 0.00048 32.5 20.4 69 241-309 37-107 (254)
298 KOG4648 Uncharacterized conser 86.7 1.2 2.7E-05 41.8 5.0 110 281-398 105-217 (536)
299 PF10602 RPN7: 26S proteasome 86.6 19 0.00042 31.2 12.3 95 239-335 37-139 (177)
300 PF00515 TPR_1: Tetratricopept 86.5 1.6 3.6E-05 25.6 4.0 28 239-266 2-29 (34)
301 KOG3364 Membrane protein invol 86.3 11 0.00024 30.7 9.4 62 343-404 34-99 (149)
302 PF09613 HrpB1_HrpK: Bacterial 86.0 3.3 7.1E-05 34.9 6.8 66 310-375 8-78 (160)
303 KOG0276 Vesicle coat complex C 85.4 14 0.00031 37.9 11.8 26 208-233 667-692 (794)
304 PF02259 FAT: FAT domain; Int 85.4 38 0.00082 33.0 17.7 68 339-407 144-215 (352)
305 PF02284 COX5A: Cytochrome c o 85.4 6.4 0.00014 30.2 7.3 60 256-317 28-87 (108)
306 KOG0276 Vesicle coat complex C 85.3 11 0.00024 38.6 11.0 44 113-163 649-692 (794)
307 cd00923 Cyt_c_Oxidase_Va Cytoc 85.2 7.7 0.00017 29.4 7.5 63 253-317 22-84 (103)
308 PRK15180 Vi polysaccharide bio 85.1 18 0.00038 36.1 12.0 136 285-425 301-438 (831)
309 TIGR02561 HrpB1_HrpK type III 84.4 4 8.7E-05 33.8 6.4 50 354-404 23-72 (153)
310 PRK13800 putative oxidoreducta 84.1 79 0.0017 35.6 24.0 266 27-318 624-893 (897)
311 KOG1550 Extracellular protein 82.9 67 0.0015 33.8 21.3 175 117-297 228-421 (552)
312 smart00028 TPR Tetratricopepti 82.7 2.6 5.6E-05 23.4 3.8 29 344-372 4-32 (34)
313 PF14853 Fis1_TPR_C: Fis1 C-te 82.4 9.3 0.0002 25.5 6.5 51 378-454 3-53 (53)
314 PF13431 TPR_17: Tetratricopep 82.3 1.2 2.5E-05 26.5 1.9 25 2-27 9-33 (34)
315 PF11207 DUF2989: Protein of u 82.2 9.5 0.00021 33.5 8.2 73 154-227 123-198 (203)
316 TIGR02561 HrpB1_HrpK type III 82.2 20 0.00043 29.8 9.5 48 285-335 22-70 (153)
317 PF13374 TPR_10: Tetratricopep 81.7 3.5 7.7E-05 25.3 4.3 28 239-266 3-30 (42)
318 PF07719 TPR_2: Tetratricopept 81.4 3.6 7.9E-05 23.9 4.0 27 240-266 3-29 (34)
319 KOG0890 Protein kinase of the 81.3 1.4E+02 0.0031 36.5 25.2 309 75-407 1388-1733(2382)
320 KOG1258 mRNA processing protei 81.3 71 0.0015 33.1 23.2 124 36-165 43-179 (577)
321 PF07035 Mic1: Colon cancer-as 80.9 35 0.00076 29.2 15.5 133 259-405 15-149 (167)
322 KOG4648 Uncharacterized conser 80.8 7.3 0.00016 36.9 7.4 93 245-341 104-198 (536)
323 PF13174 TPR_6: Tetratricopept 80.6 2.2 4.8E-05 24.6 2.8 26 348-373 7-32 (33)
324 cd00923 Cyt_c_Oxidase_Va Cytoc 80.4 12 0.00025 28.5 6.9 46 154-199 24-69 (103)
325 PF00637 Clathrin: Region in C 80.3 2.9 6.2E-05 34.8 4.5 85 137-233 12-96 (143)
326 COG4785 NlpI Lipoprotein NlpI, 80.2 43 0.00094 29.9 17.7 103 53-167 60-163 (297)
327 PF13374 TPR_10: Tetratricopep 80.0 3.2 6.9E-05 25.5 3.6 27 378-404 4-30 (42)
328 PF07721 TPR_4: Tetratricopept 80.0 3.5 7.5E-05 22.6 3.3 21 105-125 5-25 (26)
329 PRK15180 Vi polysaccharide bio 79.3 12 0.00025 37.3 8.5 122 249-374 300-424 (831)
330 PF11207 DUF2989: Protein of u 79.1 20 0.00044 31.6 9.1 73 255-328 123-197 (203)
331 PF07721 TPR_4: Tetratricopept 79.0 4 8.7E-05 22.4 3.3 21 313-333 5-25 (26)
332 COG2976 Uncharacterized protei 78.9 45 0.00096 29.3 13.8 115 256-375 70-193 (207)
333 TIGR02508 type_III_yscG type I 78.5 28 0.0006 26.7 8.6 61 214-277 46-106 (115)
334 PF06552 TOM20_plant: Plant sp 77.2 6.7 0.00015 33.7 5.6 44 357-408 96-139 (186)
335 PF13174 TPR_6: Tetratricopept 77.1 3.3 7.1E-05 23.8 2.8 28 378-405 2-29 (33)
336 KOG4570 Uncharacterized conser 76.8 7.5 0.00016 36.4 6.2 90 104-202 67-165 (418)
337 PF13181 TPR_8: Tetratricopept 76.7 5.5 0.00012 23.2 3.8 27 378-404 3-29 (34)
338 PF00637 Clathrin: Region in C 75.9 0.81 1.7E-05 38.2 -0.2 53 179-231 14-66 (143)
339 KOG2066 Vacuolar assembly/sort 75.6 1.2E+02 0.0026 32.6 25.2 166 47-238 365-536 (846)
340 PF14853 Fis1_TPR_C: Fis1 C-te 75.5 3.6 7.9E-05 27.4 2.9 31 346-376 6-36 (53)
341 PF04097 Nic96: Nup93/Nic96; 75.3 1.2E+02 0.0026 32.4 16.2 69 105-173 115-188 (613)
342 KOG2114 Vacuolar assembly/sort 75.2 1.3E+02 0.0028 32.7 21.3 75 315-391 711-786 (933)
343 COG1747 Uncharacterized N-term 74.9 1E+02 0.0022 31.4 21.6 55 211-266 70-126 (711)
344 COG3947 Response regulator con 74.1 12 0.00026 34.7 6.7 60 344-404 282-341 (361)
345 PF02284 COX5A: Cytochrome c o 73.9 18 0.00038 27.9 6.4 46 155-200 28-73 (108)
346 PRK10941 hypothetical protein; 72.9 28 0.00061 32.5 9.1 62 343-405 183-244 (269)
347 COG1747 Uncharacterized N-term 69.6 1.4E+02 0.003 30.6 19.5 158 171-335 65-231 (711)
348 PRK13800 putative oxidoreducta 68.3 2.1E+02 0.0046 32.3 25.4 42 91-132 625-666 (897)
349 COG4455 ImpE Protein of avirul 67.9 19 0.00042 32.0 6.3 63 313-375 5-69 (273)
350 TIGR03504 FimV_Cterm FimV C-te 67.8 8.9 0.00019 24.4 3.2 27 380-406 3-29 (44)
351 PF09670 Cas_Cas02710: CRISPR- 67.5 95 0.0021 30.9 12.1 54 247-301 140-197 (379)
352 KOG1308 Hsp70-interacting prot 66.9 4.3 9.4E-05 38.5 2.4 116 285-404 126-243 (377)
353 PF08631 SPO22: Meiosis protei 66.3 1.2E+02 0.0026 28.6 23.9 20 383-402 253-272 (278)
354 KOG4077 Cytochrome c oxidase, 66.0 42 0.00092 27.0 7.2 71 256-337 67-137 (149)
355 COG4455 ImpE Protein of avirul 65.8 33 0.00071 30.7 7.3 129 240-376 3-140 (273)
356 KOG4642 Chaperone-dependent E3 65.6 19 0.0004 32.6 5.9 65 337-402 39-104 (284)
357 KOG4507 Uncharacterized conser 65.5 29 0.00063 35.7 7.8 95 287-385 621-719 (886)
358 KOG2396 HAT (Half-A-TPR) repea 65.4 1.6E+02 0.0036 29.9 25.9 239 155-401 300-555 (568)
359 COG2976 Uncharacterized protei 65.3 97 0.0021 27.3 14.1 21 281-301 167-187 (207)
360 PRK14700 recombination factor 63.9 1.4E+02 0.0029 28.4 13.4 72 131-204 122-198 (300)
361 PF07163 Pex26: Pex26 protein; 63.2 1E+02 0.0022 28.8 10.2 87 245-334 90-183 (309)
362 PF10579 Rapsyn_N: Rapsyn N-te 63.1 25 0.00055 25.6 5.1 47 285-331 18-65 (80)
363 cd08819 CARD_MDA5_2 Caspase ac 62.8 28 0.0006 25.9 5.4 64 26-90 21-86 (88)
364 KOG4234 TPR repeat-containing 61.7 1E+02 0.0023 27.2 9.4 62 315-376 140-203 (271)
365 KOG1550 Extracellular protein 61.3 2.2E+02 0.0048 30.0 19.6 170 153-332 228-420 (552)
366 PF11768 DUF3312: Protein of u 61.3 1.1E+02 0.0024 31.5 11.1 56 211-266 412-472 (545)
367 TIGR03504 FimV_Cterm FimV C-te 60.9 23 0.00049 22.6 4.1 22 245-266 6-27 (44)
368 COG3947 Response regulator con 60.7 1.5E+02 0.0033 27.9 14.7 46 317-362 287-334 (361)
369 PRK12798 chemotaxis protein; R 60.1 1.9E+02 0.0041 28.8 23.4 206 220-453 125-348 (421)
370 KOG2034 Vacuolar sorting prote 58.6 2.9E+02 0.0062 30.4 23.3 171 78-263 366-555 (911)
371 KOG4279 Serine/threonine prote 58.0 1.7E+02 0.0036 31.5 11.7 50 315-374 350-399 (1226)
372 PF07163 Pex26: Pex26 protein; 57.2 1.3E+02 0.0029 28.1 9.8 69 148-218 94-164 (309)
373 KOG0376 Serine-threonine phosp 57.0 10 0.00023 37.7 3.2 102 280-386 11-115 (476)
374 KOG1464 COP9 signalosome, subu 56.8 1.7E+02 0.0036 27.2 15.5 183 148-330 38-252 (440)
375 COG2909 MalT ATP-dependent tra 56.4 3.1E+02 0.0067 30.2 23.1 215 183-401 426-684 (894)
376 PF11846 DUF3366: Domain of un 55.8 42 0.00092 29.5 6.7 38 336-373 139-176 (193)
377 PF09986 DUF2225: Uncharacteri 55.5 69 0.0015 28.8 8.0 64 343-406 120-195 (214)
378 PF14561 TPR_20: Tetratricopep 55.5 20 0.00044 27.0 3.9 40 364-404 11-50 (90)
379 PF11663 Toxin_YhaV: Toxin wit 55.3 13 0.00028 30.2 2.8 30 151-182 109-138 (140)
380 KOG0292 Vesicle coat complex C 55.1 16 0.00035 39.2 4.3 94 251-368 606-699 (1202)
381 PF10366 Vps39_1: Vacuolar sor 54.8 94 0.002 24.4 7.7 27 240-266 41-67 (108)
382 KOG3807 Predicted membrane pro 54.6 1.7E+02 0.0037 28.0 10.3 17 359-375 380-396 (556)
383 PF11846 DUF3366: Domain of un 54.1 53 0.0011 28.9 7.0 31 305-335 140-170 (193)
384 COG2909 MalT ATP-dependent tra 53.8 3.4E+02 0.0074 29.9 23.2 218 148-366 426-684 (894)
385 PF13934 ELYS: Nuclear pore co 53.4 1.8E+02 0.0038 26.5 12.8 104 241-353 79-184 (226)
386 KOG1586 Protein required for f 53.2 1.8E+02 0.0039 26.5 15.8 60 317-376 162-230 (288)
387 KOG2063 Vacuolar assembly/sort 53.0 3.7E+02 0.0079 30.0 15.2 29 133-166 505-533 (877)
388 PF09477 Type_III_YscG: Bacter 52.5 1.1E+02 0.0024 23.9 8.9 61 107-175 46-106 (116)
389 PF10366 Vps39_1: Vacuolar sor 51.5 1.1E+02 0.0025 23.9 7.7 28 133-165 40-67 (108)
390 COG4976 Predicted methyltransf 51.3 28 0.0006 31.3 4.5 58 318-375 4-63 (287)
391 COG2256 MGS1 ATPase related to 50.7 2.7E+02 0.0058 27.8 14.2 55 130-186 244-298 (436)
392 PF14689 SPOB_a: Sensor_kinase 50.7 30 0.00065 23.9 3.8 30 237-266 22-51 (62)
393 PF04097 Nic96: Nup93/Nic96; 50.5 3.5E+02 0.0075 29.0 19.7 31 309-339 500-535 (613)
394 cd08819 CARD_MDA5_2 Caspase ac 50.3 1E+02 0.0022 23.0 6.6 39 219-258 48-86 (88)
395 PF11838 ERAP1_C: ERAP1-like C 50.3 2.4E+02 0.0051 27.0 17.7 84 287-370 144-230 (324)
396 PF06552 TOM20_plant: Plant sp 50.3 1.6E+02 0.0035 25.6 8.7 27 325-351 96-123 (186)
397 KOG2659 LisH motif-containing 49.7 1.6E+02 0.0035 26.6 9.0 93 240-335 28-129 (228)
398 TIGR02270 conserved hypothetic 49.3 2.9E+02 0.0063 27.8 23.0 122 204-336 158-279 (410)
399 PF10579 Rapsyn_N: Rapsyn N-te 48.7 62 0.0013 23.7 5.1 47 250-296 18-66 (80)
400 smart00386 HAT HAT (Half-A-TPR 48.3 27 0.00058 19.6 2.9 28 355-383 1-28 (33)
401 KOG1498 26S proteasome regulat 47.5 2.9E+02 0.0063 27.3 14.2 109 313-425 135-261 (439)
402 PRK10941 hypothetical protein; 47.0 1.4E+02 0.0031 27.9 8.8 64 313-376 185-250 (269)
403 PF04910 Tcf25: Transcriptiona 46.8 3E+02 0.0064 27.2 14.7 64 340-404 99-167 (360)
404 PF09477 Type_III_YscG: Bacter 46.7 1.4E+02 0.003 23.4 9.9 80 186-268 20-99 (116)
405 KOG0545 Aryl-hydrocarbon recep 45.5 1.4E+02 0.0031 27.3 8.0 87 317-404 186-292 (329)
406 KOG0292 Vesicle coat complex C 45.2 81 0.0018 34.3 7.4 100 53-166 657-782 (1202)
407 PF13762 MNE1: Mitochondrial s 44.7 1.8E+02 0.004 24.2 8.6 51 130-185 77-128 (145)
408 PRK13342 recombination factor 44.7 3.4E+02 0.0075 27.3 16.2 116 153-286 153-278 (413)
409 PRK13342 recombination factor 44.4 3.5E+02 0.0075 27.3 12.3 47 135-183 230-276 (413)
410 PF04190 DUF410: Protein of un 44.3 2.7E+02 0.0058 25.9 15.5 160 218-404 1-169 (260)
411 KOG2300 Uncharacterized conser 43.5 3.8E+02 0.0082 27.4 18.1 212 118-334 299-552 (629)
412 PF07720 TPR_3: Tetratricopept 42.9 60 0.0013 19.5 3.8 19 345-363 5-23 (36)
413 PRK10564 maltose regulon perip 42.6 52 0.0011 31.0 5.1 41 240-280 259-299 (303)
414 cd08326 CARD_CASP9 Caspase act 42.0 42 0.00092 24.9 3.7 32 111-142 40-71 (84)
415 PF13762 MNE1: Mitochondrial s 42.0 2.1E+02 0.0045 23.9 9.9 49 237-285 78-127 (145)
416 PF08311 Mad3_BUB1_I: Mad3/BUB 41.6 1.6E+02 0.0034 23.8 7.4 42 359-401 81-124 (126)
417 PF11663 Toxin_YhaV: Toxin wit 41.4 29 0.00063 28.2 2.9 34 248-283 105-138 (140)
418 PF12862 Apc5: Anaphase-promot 41.3 75 0.0016 24.0 5.2 53 352-404 9-69 (94)
419 PF04034 DUF367: Domain of unk 41.0 1.9E+02 0.0042 23.4 7.6 56 309-364 66-122 (127)
420 PF14863 Alkyl_sulf_dimr: Alky 40.4 1E+02 0.0023 25.5 6.1 63 325-391 57-119 (141)
421 PF06957 COPI_C: Coatomer (COP 40.3 1.3E+02 0.0028 30.3 7.7 44 332-375 289-334 (422)
422 PRK11619 lytic murein transgly 40.0 5.1E+02 0.011 28.0 30.9 297 18-335 45-372 (644)
423 KOG4507 Uncharacterized conser 39.9 1.1E+02 0.0023 31.8 7.1 132 270-405 568-705 (886)
424 KOG4077 Cytochrome c oxidase, 39.9 1.5E+02 0.0032 24.1 6.4 44 157-200 69-112 (149)
425 PF11848 DUF3368: Domain of un 38.4 1.1E+02 0.0024 19.8 5.3 33 249-281 13-45 (48)
426 PF14689 SPOB_a: Sensor_kinase 38.0 76 0.0016 21.9 4.3 21 279-299 29-49 (62)
427 KOG1308 Hsp70-interacting prot 37.9 33 0.00072 32.8 3.1 86 322-408 127-214 (377)
428 COG5108 RPO41 Mitochondrial DN 37.8 5E+02 0.011 27.7 11.4 43 240-285 67-115 (1117)
429 KOG3364 Membrane protein invol 37.6 1.6E+02 0.0035 24.3 6.4 71 306-376 29-106 (149)
430 PF11525 CopK: Copper resistan 37.1 15 0.00032 25.7 0.6 21 521-541 8-28 (73)
431 KOG0686 COP9 signalosome, subu 37.0 4.4E+02 0.0095 26.3 11.5 57 210-266 153-215 (466)
432 PRK10564 maltose regulon perip 36.5 61 0.0013 30.6 4.6 39 134-177 259-297 (303)
433 PF10255 Paf67: RNA polymerase 36.3 1.8E+02 0.004 29.0 8.1 60 276-335 125-190 (404)
434 KOG4521 Nuclear pore complex, 36.2 7.3E+02 0.016 28.6 14.8 57 276-334 986-1046(1480)
435 COG0735 Fur Fe2+/Zn2+ uptake r 36.2 2.2E+02 0.0047 23.8 7.5 42 282-324 29-70 (145)
436 TIGR01503 MthylAspMut_E methyl 35.8 1.5E+02 0.0032 29.9 7.3 260 117-434 12-300 (480)
437 PF14561 TPR_20: Tetratricopep 35.2 1.9E+02 0.0042 21.7 10.0 62 340-402 21-85 (90)
438 KOG3824 Huntingtin interacting 34.4 73 0.0016 30.0 4.7 58 319-376 126-185 (472)
439 KOG4642 Chaperone-dependent E3 34.0 3.8E+02 0.0082 24.7 9.8 116 217-334 20-142 (284)
440 PRK11639 zinc uptake transcrip 33.3 1.9E+02 0.0042 24.8 7.0 60 265-326 18-77 (169)
441 PF04910 Tcf25: Transcriptiona 32.8 4.9E+02 0.011 25.6 17.6 89 280-373 110-225 (360)
442 KOG0551 Hsp90 co-chaperone CNS 32.6 2.2E+02 0.0047 27.5 7.4 88 312-400 84-177 (390)
443 cd08326 CARD_CASP9 Caspase act 31.8 2.2E+02 0.0047 21.2 6.9 41 217-257 40-80 (84)
444 COG4941 Predicted RNA polymera 31.1 5E+02 0.011 25.2 10.4 120 253-376 271-400 (415)
445 PF10255 Paf67: RNA polymerase 30.9 2.7E+02 0.0058 27.9 8.2 55 211-265 126-191 (404)
446 KOG3807 Predicted membrane pro 30.2 2.8E+02 0.006 26.7 7.7 108 254-375 232-346 (556)
447 PF08311 Mad3_BUB1_I: Mad3/BUB 30.0 3E+02 0.0064 22.2 8.3 42 291-333 81-123 (126)
448 PF09797 NatB_MDM20: N-acetylt 30.0 1.7E+02 0.0038 28.8 7.1 61 341-402 180-243 (365)
449 KOG2396 HAT (Half-A-TPR) repea 29.4 6.5E+02 0.014 26.0 18.8 104 228-334 449-555 (568)
450 PF03745 DUF309: Domain of unk 29.3 2E+02 0.0042 19.9 5.1 17 250-266 11-27 (62)
451 KOG2063 Vacuolar assembly/sort 29.3 8.5E+02 0.019 27.3 15.7 36 184-219 603-638 (877)
452 cd08332 CARD_CASP2 Caspase act 29.3 97 0.0021 23.3 3.9 29 114-142 47-75 (90)
453 PF08967 DUF1884: Domain of un 29.2 74 0.0016 23.2 3.0 27 435-461 7-33 (85)
454 KOG4814 Uncharacterized conser 29.1 5.7E+02 0.012 27.2 10.2 85 319-404 364-456 (872)
455 COG4976 Predicted methyltransf 29.0 92 0.002 28.2 4.2 55 351-406 5-59 (287)
456 KOG0991 Replication factor C, 28.9 4.6E+02 0.01 24.1 11.6 90 182-274 169-274 (333)
457 KOG0686 COP9 signalosome, subu 28.7 6E+02 0.013 25.4 13.1 60 101-165 150-215 (466)
458 PF12968 DUF3856: Domain of Un 28.1 3.2E+02 0.007 22.0 9.4 20 310-329 56-75 (144)
459 KOG3677 RNA polymerase I-assoc 27.8 5.2E+02 0.011 25.9 9.2 60 175-234 238-299 (525)
460 PF09454 Vps23_core: Vps23 cor 27.8 1.9E+02 0.0042 20.2 4.9 48 235-283 5-52 (65)
461 PF11817 Foie-gras_1: Foie gra 27.6 2.4E+02 0.0053 25.9 7.2 21 315-335 184-204 (247)
462 PF02607 B12-binding_2: B12 bi 27.3 99 0.0021 22.3 3.7 39 148-186 12-50 (79)
463 KOG3824 Huntingtin interacting 27.2 1E+02 0.0022 29.1 4.4 53 284-339 127-181 (472)
464 KOG2062 26S proteasome regulat 27.2 8.4E+02 0.018 26.6 12.0 235 145-385 403-648 (929)
465 PRK14962 DNA polymerase III su 27.0 5.7E+02 0.012 26.4 10.2 26 148-173 254-279 (472)
466 cd00280 TRFH Telomeric Repeat 27.0 4.2E+02 0.0091 23.2 7.6 20 316-335 118-137 (200)
467 PF09986 DUF2225: Uncharacteri 26.9 4.6E+02 0.0099 23.6 8.5 48 255-302 142-194 (214)
468 COG5108 RPO41 Mitochondrial DN 26.7 3.5E+02 0.0075 28.8 8.3 47 243-289 33-81 (1117)
469 PF10475 DUF2450: Protein of u 26.5 4.9E+02 0.011 24.7 9.2 52 213-266 104-155 (291)
470 TIGR02270 conserved hypothetic 26.1 6.9E+02 0.015 25.2 24.5 44 207-250 100-143 (410)
471 PRK13341 recombination factor 25.7 9.2E+02 0.02 26.5 14.6 144 87-233 197-358 (725)
472 COG2178 Predicted RNA-binding 25.6 4.7E+02 0.01 23.1 8.4 104 290-404 20-149 (204)
473 PF12796 Ank_2: Ankyrin repeat 25.4 2.7E+02 0.0058 20.2 6.4 80 80-171 4-86 (89)
474 PF02847 MA3: MA3 domain; Int 24.8 2E+02 0.0044 22.3 5.4 22 213-234 8-29 (113)
475 cd07153 Fur_like Ferric uptake 24.7 1.8E+02 0.004 22.8 5.1 45 244-288 6-50 (116)
476 PF12862 Apc5: Anaphase-promot 24.7 3.1E+02 0.0066 20.6 7.9 18 283-300 51-68 (94)
477 smart00638 LPD_N Lipoprotein N 24.6 8.5E+02 0.019 25.7 23.9 47 101-154 310-357 (574)
478 COG5191 Uncharacterized conser 24.3 1.9E+02 0.0042 27.5 5.5 76 305-381 103-181 (435)
479 COG0735 Fur Fe2+/Zn2+ uptake r 24.1 3.1E+02 0.0068 22.8 6.5 17 189-205 37-53 (145)
480 COG5159 RPN6 26S proteasome re 24.1 6.2E+02 0.013 24.0 14.9 149 148-296 14-188 (421)
481 cd08323 CARD_APAF1 Caspase act 23.9 2.3E+02 0.005 21.1 5.0 62 28-90 18-79 (86)
482 PF00244 14-3-3: 14-3-3 protei 23.9 5.6E+02 0.012 23.4 10.4 51 148-198 12-63 (236)
483 PF04090 RNA_pol_I_TF: RNA pol 23.9 5.2E+02 0.011 23.0 8.5 60 343-402 43-102 (199)
484 PF05053 Menin: Menin; InterP 23.7 4.1E+02 0.0088 27.7 8.1 80 243-335 262-344 (618)
485 PRK02287 hypothetical protein; 23.0 4.9E+02 0.011 22.4 7.6 25 311-335 109-133 (171)
486 KOG0687 26S proteasome regulat 22.9 7E+02 0.015 24.1 12.7 94 274-369 105-209 (393)
487 PF13929 mRNA_stabil: mRNA sta 22.9 6.6E+02 0.014 23.8 20.3 241 108-366 3-263 (292)
488 PRK11639 zinc uptake transcrip 22.5 2.7E+02 0.0058 23.9 6.0 58 165-223 19-76 (169)
489 cd00280 TRFH Telomeric Repeat 22.3 3.1E+02 0.0066 24.0 6.0 29 347-376 117-145 (200)
490 PF11768 DUF3312: Protein of u 22.3 9.1E+02 0.02 25.2 10.8 25 73-97 411-435 (545)
491 PF01475 FUR: Ferric uptake re 22.2 1.6E+02 0.0035 23.3 4.4 45 243-287 12-56 (120)
492 KOG3636 Uncharacterized conser 22.2 6E+02 0.013 25.6 8.6 85 165-250 176-272 (669)
493 PF14669 Asp_Glu_race_2: Putat 21.8 5.6E+02 0.012 22.7 12.6 58 278-335 137-207 (233)
494 PF02607 B12-binding_2: B12 bi 21.7 1.7E+02 0.0038 20.9 4.1 39 249-287 12-50 (79)
495 PF11817 Foie-gras_1: Foie gra 21.6 4.8E+02 0.01 24.0 7.9 55 346-400 183-242 (247)
496 PF15469 Sec5: Exocyst complex 21.5 5.3E+02 0.012 22.2 10.6 55 241-301 60-114 (182)
497 PF07575 Nucleopor_Nup85: Nup8 21.4 4.4E+02 0.0095 27.9 8.5 63 237-301 371-433 (566)
498 PF11123 DNA_Packaging_2: DNA 21.2 1.8E+02 0.004 20.8 3.7 29 23-51 13-44 (82)
499 KOG4567 GTPase-activating prot 21.2 7.4E+02 0.016 23.8 9.9 42 193-234 264-305 (370)
500 COG5187 RPN7 26S proteasome re 21.0 4.4E+02 0.0096 24.9 7.1 110 295-406 60-185 (412)
No 1
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=5e-112 Score=905.19 Aligned_cols=535 Identities=36% Similarity=0.641 Sum_probs=516.8
Q ss_pred CCCccHHHHHHHHHHhCCCChHHHHHHHccCCCCChhhHHHHHHHHHcCCCCHHHHHHHHhcCC----CCCeehHHHHHH
Q 009066 3 VKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP----IKDTASWNTMIS 78 (545)
Q Consensus 3 ~~~~~~~~~li~~~~~~g~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~~g~~~~A~~~~~~m~----~~d~~~~~~li~ 78 (545)
.||+++||.|+.+|+++|+ +++|+++|++|++||+++||++|.+|++. |++++|+++|++|. .||..+|+.++.
T Consensus 155 ~~~~~~~n~Li~~y~k~g~-~~~A~~lf~~m~~~~~~t~n~li~~~~~~-g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~ 232 (697)
T PLN03081 155 EPDQYMMNRVLLMHVKCGM-LIDARRLFDEMPERNLASWGTIIGGLVDA-GNYREAFALFREMWEDGSDAEPRTFVVMLR 232 (697)
T ss_pred CcchHHHHHHHHHHhcCCC-HHHHHHHHhcCCCCCeeeHHHHHHHHHHC-cCHHHHHHHHHHHHHhCCCCChhhHHHHHH
Confidence 4678888888888888888 88888888888888888888888888888 88888888888886 678888888888
Q ss_pred HHHhCCCHHHHHHHHhhCC----cCCHhHHHHHHHHHHHcCChHHHHHHHhhCCCCCcccHHHHHHHhcchhhhccCChH
Q 009066 79 GFVQKKNMAKARDLFLAMP----EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAE 154 (545)
Q Consensus 79 ~~~~~g~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~g~~~ 154 (545)
+|++.|+.+.+.+++..+. .+|..++|+|+++|+++|++++|.++|++|+.+|+++||+||.+| .+.|+.+
T Consensus 233 a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y-----~~~g~~~ 307 (697)
T PLN03081 233 ASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGY-----ALHGYSE 307 (697)
T ss_pred HHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHH-----HhCCCHH
Confidence 8888888888888887766 478899999999999999999999999999999999999999999 9999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhcc
Q 009066 155 DGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ 234 (545)
Q Consensus 155 ~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~ 234 (545)
+|+++|++|.+.|+.||..||++++.+|++.|++++|+++|..|.+.|++||..++++|+++|+++|++++|.++|++|.
T Consensus 308 eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~ 387 (697)
T PLN03081 308 EALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP 387 (697)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHH
Q 009066 235 RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTC 314 (545)
Q Consensus 235 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 314 (545)
++|+++||+||.+|+++|+.++|+++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+++|+.|+..+|++
T Consensus 388 ~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~ 467 (697)
T PLN03081 388 RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYAC 467 (697)
T ss_pred CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999988899999999999
Q ss_pred HHHHHhHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchH
Q 009066 315 MVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDD 394 (545)
Q Consensus 315 li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~ 394 (545)
|+++|++.|++++|.+++++|++.|+..+|++|+.+|+.+|+++.|+.+++++++++|++.. +|..|+++|++.|+|++
T Consensus 468 li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~-~y~~L~~~y~~~G~~~~ 546 (697)
T PLN03081 468 MIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLN-NYVVLLNLYNSSGRQAE 546 (697)
T ss_pred HHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCc-chHHHHHHHHhCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999888 99999999999999999
Q ss_pred HHHHHHHhhhCCCccCCceeEEEECCEEEEEecCCCCCCChHHHHHHHHHHHHHHHHcCcccCCcccccccchhhHhhhh
Q 009066 395 VARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLL 474 (545)
Q Consensus 395 a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~m~~~g~~pd~~~~~~~~~~~~~~~~~ 474 (545)
|.++++.|+++|+.+.||+||+++++.+|.|.++|.+||+.++||..+.++..+|++.||.||+..++|++++++++..+
T Consensus 547 A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~~~~~~~ 626 (697)
T PLN03081 547 AAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSG 626 (697)
T ss_pred HHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhchHHHHHHHHhccCCCCCcEEEeccccccccccchHHHhhhhccceEEEecCCccccccCCcCCCCCCC
Q 009066 475 LFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGDYW 545 (545)
Q Consensus 475 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~d~~~~h~~~~g~~~~~~~~ 545 (545)
..||||||++|||+++|+|.||||+||||+|+|||+|+|+||++.+|+|||||.+|||||+||+|||+|||
T Consensus 627 ~~hsekla~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d~w 697 (697)
T PLN03081 627 RYHSEKLAIAFGLINTSEWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697 (697)
T ss_pred HhccHHHHHHhhCccCCCCCeEEEecCCEECCCchhhHHHHhhhcceEEEEecCCccccCCCCcccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.5e-106 Score=882.93 Aligned_cols=530 Identities=38% Similarity=0.690 Sum_probs=517.9
Q ss_pred CCCccHHHHHHHHHHhCCCChHHHHHHHccCCCCChhhHHHHHHHHHcCCCCHHHHHHHHhcCC----CCCeehHHHHHH
Q 009066 3 VKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP----IKDTASWNTMIS 78 (545)
Q Consensus 3 ~~~~~~~~~li~~~~~~g~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~~g~~~~A~~~~~~m~----~~d~~~~~~li~ 78 (545)
.||+.+||+||.+|+++|+ +++|.++|+.|+.||+++||++|.+|.+. |++++|+++|++|. .||..||+.++.
T Consensus 320 ~~d~~~~n~Li~~y~k~g~-~~~A~~vf~~m~~~d~~s~n~li~~~~~~-g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~ 397 (857)
T PLN03077 320 AVDVSVCNSLIQMYLSLGS-WGEAEKVFSRMETKDAVSWTAMISGYEKN-GLPDKALETYALMEQDNVSPDEITIASVLS 397 (857)
T ss_pred ccchHHHHHHHHHHHhcCC-HHHHHHHHhhCCCCCeeeHHHHHHHHHhC-CCHHHHHHHHHHHHHhCCCCCceeHHHHHH
Confidence 4789999999999999999 99999999999999999999999999999 99999999999996 799999999999
Q ss_pred HHHhCCCHHHHHHHHhhCC----cCCHhHHHHHHHHHHHcCChHHHHHHHhhCCCCCcccHHHHHHHhcchhhhccCChH
Q 009066 79 GFVQKKNMAKARDLFLAMP----EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAE 154 (545)
Q Consensus 79 ~~~~~g~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~g~~~ 154 (545)
+|++.|++++|.++|+.|. .++..++|+|+++|+++|++++|.++|++|.++|+++||+||.+| .++|+.+
T Consensus 398 a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~-----~~~g~~~ 472 (857)
T PLN03077 398 ACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGL-----RLNNRCF 472 (857)
T ss_pred HHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHH-----HHCCCHH
Confidence 9999999999999999987 468899999999999999999999999999999999999999999 9999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhcc
Q 009066 155 DGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ 234 (545)
Q Consensus 155 ~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~ 234 (545)
+|+++|++|.. +++||..||+++|.+|++.|+++.++++|..+.+.|+.+|..++++|+++|+++|++++|.++|+++
T Consensus 473 eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~- 550 (857)
T PLN03077 473 EALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH- 550 (857)
T ss_pred HHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-
Confidence 99999999986 5999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHH
Q 009066 235 RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTC 314 (545)
Q Consensus 235 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 314 (545)
.+|+++||+||.+|+++|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+++|+.|+..+|++
T Consensus 551 ~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~ 630 (857)
T PLN03077 551 EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYAC 630 (857)
T ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999977899999999999
Q ss_pred HHHHHhHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchH
Q 009066 315 MVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDD 394 (545)
Q Consensus 315 li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~ 394 (545)
|+++|++.|++++|.+++++|+++||..+|++|+.+|..+|+.+.|+.+.+++++++|++.. .|..|.++|+..|+|++
T Consensus 631 lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~-~y~ll~n~ya~~g~~~~ 709 (857)
T PLN03077 631 VVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVG-YYILLCNLYADAGKWDE 709 (857)
T ss_pred HHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcc-hHHHHHHHHHHCCChHH
Confidence 99999999999999999999999999999999999999999999999999999999999998 99999999999999999
Q ss_pred HHHHHHHhhhCCCccCCceeEEEECCEEEEEecCCCCCCChHHHHHHHHHHHHHHHHcCcccCCcccccccchhhHhhhh
Q 009066 395 VARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLL 474 (545)
Q Consensus 395 a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~m~~~g~~pd~~~~~~~~~~~~~~~~~ 474 (545)
|.++++.|+++|++|+||+||+++++.+|.|..+|.+||+.++||..+.++.++|++.||.||+...+ ++++++++..+
T Consensus 710 a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~-~~~~~~k~~~~ 788 (857)
T PLN03077 710 VARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSM-DEIEVSKDDIF 788 (857)
T ss_pred HHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcchhc-cccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999877 44778899999
Q ss_pred hhchHHHHHHHHhccCCCCCcEEEeccccccccccchHHHhhhhccceEEEecCCccccccCCcCCCCC
Q 009066 475 LFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKREIIVRDTTRFHHFKDGTCSCGD 543 (545)
Q Consensus 475 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~d~~~~h~~~~g~~~~~~ 543 (545)
..||||||++|||+++|++.||||+||||+|+|||+++|+||++.+|+|||||.+|||||++|+|||+|
T Consensus 789 ~~hse~la~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d 857 (857)
T PLN03077 789 CGHSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVRREISVRDTEQFHHFKDGECSCGD 857 (857)
T ss_pred HhccHHHHHHHhhhcCCCCCeEEEeCCCEeCccHHHHHHHHHHHhCeEEEEecCCcceeCCCCcccCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999998
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.3e-65 Score=561.03 Aligned_cols=499 Identities=21% Similarity=0.336 Sum_probs=443.3
Q ss_pred CCCccHHHHHHHHHHhCCCChHHHHHHHccCCCCChhhHHHHHHHHHcCCCCHHHHHHHHhcCC----CCCeehHHHHHH
Q 009066 3 VKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP----IKDTASWNTMIS 78 (545)
Q Consensus 3 ~~~~~~~~~li~~~~~~g~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~~g~~~~A~~~~~~m~----~~d~~~~~~li~ 78 (545)
.+++.++|+||++|+++|+ ++.|+++|++|++||+++||++|.+|.+. |++++|+++|++|. .||.+||++++.
T Consensus 118 ~~~~~~~n~li~~~~~~g~-~~~A~~~f~~m~~~d~~~~n~li~~~~~~-g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~ 195 (857)
T PLN03077 118 SLGVRLGNAMLSMFVRFGE-LVHAWYVFGKMPERDLFSWNVLVGGYAKA-GYFDEALCLYHRMLWAGVRPDVYTFPCVLR 195 (857)
T ss_pred CCCchHHHHHHHHHHhCCC-hHHHHHHHhcCCCCCeeEHHHHHHHHHhC-CCHHHHHHHHHHHHHcCCCCChhHHHHHHH
Confidence 4678899999999999999 99999999999999999999999999999 99999999999996 799999999999
Q ss_pred HHHhCCCHHHHHHHHhhCC----cCCHhHHHHHHHHHHHcCChHHHHHHHhhCCCCCcccHHHHHHHhcchhhhccCChH
Q 009066 79 GFVQKKNMAKARDLFLAMP----EKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAE 154 (545)
Q Consensus 79 ~~~~~g~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~g~~~ 154 (545)
+|++.+++..+.+++..|. .+|..++|+|+++|+++|++++|.++|++|+.+|+++||+||.+| .+.|+++
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~-----~~~g~~~ 270 (857)
T PLN03077 196 TCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGY-----FENGECL 270 (857)
T ss_pred HhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHH-----HhCCCHH
Confidence 9999999999999999887 579999999999999999999999999999999999999999999 9999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhcc
Q 009066 155 DGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ 234 (545)
Q Consensus 155 ~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~ 234 (545)
+|+++|++|...|+.||..||+.++.+|++.|+++.|.++|..+.+.|+.||..+|++|+++|+++|++++|.++|++|.
T Consensus 271 eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~ 350 (857)
T PLN03077 271 EGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME 350 (857)
T ss_pred HHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHH
Q 009066 235 RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTC 314 (545)
Q Consensus 235 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 314 (545)
++|+++||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++++.+.+. |+.|+..+|++
T Consensus 351 ~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~-g~~~~~~~~n~ 429 (857)
T PLN03077 351 TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERK-GLISYVVVANA 429 (857)
T ss_pred CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHh-CCCcchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999876 99999999999
Q ss_pred HHHHHhHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcC-CCCCCchhHHHHHHHHHHcCCch
Q 009066 315 MVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNL-NPANAAGCYVQLANIYAAMKKWD 393 (545)
Q Consensus 315 li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~~l~~~~~~~g~~~ 393 (545)
|+++|+++|++++|.++|++|+ +||..+|+++|.+|.++|+.++|..+|++|.+. .|+. . +|..++.+|++.|..+
T Consensus 430 Li~~y~k~g~~~~A~~vf~~m~-~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~-~-t~~~lL~a~~~~g~l~ 506 (857)
T PLN03077 430 LIEMYSKCKCIDKALEVFHNIP-EKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNS-V-TLIAALSACARIGALM 506 (857)
T ss_pred HHHHHHHcCCHHHHHHHHHhCC-CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCH-h-HHHHHHHHHhhhchHH
Confidence 9999999999999999999996 589999999999999999999999999999764 4554 3 8999999988888888
Q ss_pred HHHHHHHHhhhCCCccCCceeEEEECCEEEE--------------------------EecCCCCCCChHHHHHHHHHHHH
Q 009066 394 DVARIRLSMKENNVVKMPGYSWIEVGTVVHE--------------------------FRSGDRVHPELVSIHEKLKELEK 447 (545)
Q Consensus 394 ~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~l~~~~~ 447 (545)
.+.+++..|.+.|+.++.... +..+.. .+.+...|+.. ..+.++++
T Consensus 507 ~~~~i~~~~~~~g~~~~~~~~----naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~----~~A~~lf~ 578 (857)
T PLN03077 507 CGKEIHAHVLRTGIGFDGFLP----NALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKG----SMAVELFN 578 (857)
T ss_pred HhHHHHHHHHHhCCCccceec----hHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCH----HHHHHHHH
Confidence 888888888888876543211 000000 11122223333 33688999
Q ss_pred HHHHcCcccCCcccccccchhhHhhhh---hhchHHHHHHHHhccCCCCCcEEEeccccccccccchHHHhhhhccc
Q 009066 448 RMKLAGYVPDLEFALHAVGEEVKEQLL---LFHSEKLAIAFGLIKVPLGTPIRVFKNLRVCGDCHRATKYISAIEKR 521 (545)
Q Consensus 448 ~m~~~g~~pd~~~~~~~~~~~~~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 521 (545)
+|++.|+.||..++...+..+.+.+.+ ....+.+...+|+.+...+.. ++++.+.++|+.++|.+++.+|+..
T Consensus 579 ~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~-~lv~~l~r~G~~~eA~~~~~~m~~~ 654 (857)
T PLN03077 579 RMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYA-CVVDLLGRAGKLTEAYNFINKMPIT 654 (857)
T ss_pred HHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHH-HHHHHHHhCCCHHHHHHHHHHCCCC
Confidence 999999999999997665555544432 233455555667655544433 6889999999999999999998644
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.8e-60 Score=511.57 Aligned_cols=503 Identities=16% Similarity=0.249 Sum_probs=425.3
Q ss_pred CCccHHHHHHHHHHhCCCChHHHHHHHccCCCCChh-----hHHHHHHHHHcCCCCHHHHHHHHhcCCCCCeehHHHHHH
Q 009066 4 KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVV-----SYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMIS 78 (545)
Q Consensus 4 ~~~~~~~~li~~~~~~g~~~~~A~~~f~~~~~~~~~-----~~~~li~~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~ 78 (545)
++...|..++..++++|+ +++|+++|+.|++++.+ .++.++.+|.+. |.+++|+.+|+.|..||..+|+.++.
T Consensus 368 ~~~~~~~~~y~~l~r~G~-l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~-g~~~eAl~lf~~M~~pd~~Tyn~LL~ 445 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGR-IKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQ-RAVKEAFRFAKLIRNPTLSTFNMLMS 445 (1060)
T ss_pred CCchHHHHHHHHHHHCcC-HHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHC-CCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 456778899999999999 99999999999976554 455667778888 99999999999999999999999999
Q ss_pred HHHhCCCHHHHHHHHhhCC----cCCHhHHHHHHHHHHHcCChHHHHHHHhhCC----CCCcccHHHHHHHhcchhhhcc
Q 009066 79 GFVQKKNMAKARDLFLAMP----EKNSVSWSAMISGYIECGQLDKAVELFKVAP----VKSVVAWTAMISGYMKFGYVEN 150 (545)
Q Consensus 79 ~~~~~g~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~ 150 (545)
+|++.|++++|.++|+.|. .||..+|++||.+|+++|++++|.++|++|. .||.++||+||.+| .+.
T Consensus 446 a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy-----~k~ 520 (1060)
T PLN03218 446 VCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGC-----ARA 520 (1060)
T ss_pred HHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-----HHC
Confidence 9999999999999999998 4799999999999999999999999999998 57999999999999 999
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHh--CCCCCCcccHHHHHHHHHhcCCHHHHHH
Q 009066 151 SWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK--SPLCKDTTALTPLISMYCKCGDLEDACK 228 (545)
Q Consensus 151 g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~--~g~~~~~~~~~~li~~y~~~g~~~~A~~ 228 (545)
|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+ .|+.||..+|++||.+|+++|++++|.+
T Consensus 521 G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~e 600 (1060)
T PLN03218 521 GQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKE 600 (1060)
T ss_pred cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999986 6889999999999999999999999999
Q ss_pred HHHhccC----CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHhHHhcC
Q 009066 229 LFLEIQR----KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYG 304 (545)
Q Consensus 229 ~f~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 304 (545)
+|+.|.+ ++..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+. |
T Consensus 601 lf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~-G 679 (1060)
T PLN03218 601 VYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQ-G 679 (1060)
T ss_pred HHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-C
Confidence 9999985 5679999999999999999999999999999999999999999999999999999999999999876 9
Q ss_pred CCCCHHHHHHHHHHHhHcCCHHHHHHHHHhC---CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcC--CCCCCchhH
Q 009066 305 IAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM---PFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNL--NPANAAGCY 379 (545)
Q Consensus 305 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~ 379 (545)
+.|+..+|++|+++|+++|++++|.++|++| ++.||..+|++||.+|++.|++++|.++|++|.+. .|+.. +|
T Consensus 680 ~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~--Ty 757 (1060)
T PLN03218 680 IKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTI--TY 757 (1060)
T ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHH--HH
Confidence 9999999999999999999999999999998 67899999999999999999999999999999765 46544 99
Q ss_pred HHHHHHHHHcCCchHHHHHHHHhhhCCCccCCceeEEEE-------------CCEEEEEecCCCCCCCh-HHHHHHHHHH
Q 009066 380 VQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEV-------------GTVVHEFRSGDRVHPEL-VSIHEKLKEL 445 (545)
Q Consensus 380 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~-------------~~~~~~~~~~~~~~~~~-~~~~~~l~~~ 445 (545)
..|+.+|.+.|++++|.++++.|.+.|+.++.......+ ...+..|-.+ ++.. ..-...+..+
T Consensus 758 ~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g---~~~~~n~w~~~Al~l 834 (1060)
T PLN03218 758 SILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSG---RPQIENKWTSWALMV 834 (1060)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcc---ccccccchHHHHHHH
Confidence 999999999999999999999999999987652211000 0011111111 1111 1112457889
Q ss_pred HHHHHHcCcccCCcccccccchhhHhhhhhhchHHHHHHHHhccCCCCCcE--EEecccccccc-ccchHHHhhhhccce
Q 009066 446 EKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLAIAFGLIKVPLGTPI--RVFKNLRVCGD-CHRATKYISAIEKRE 522 (545)
Q Consensus 446 ~~~m~~~g~~pd~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~s~~~~~~ 522 (545)
+++|.+.|+.||..++...+....+.+ -......+-..++....+++... .+++.+ +. -++|..++..|..+.
T Consensus 835 f~eM~~~Gi~Pd~~T~~~vL~cl~~~~-~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~---~~~~~~A~~l~~em~~~G 910 (1060)
T PLN03218 835 YRETISAGTLPTMEVLSQVLGCLQLPH-DATLRNRLIENLGISADSQKQSNLSTLVDGF---GEYDPRAFSLLEEAASLG 910 (1060)
T ss_pred HHHHHHCCCCCCHHHHHHHHHHhcccc-cHHHHHHHHHHhccCCCCcchhhhHHHHHhh---ccChHHHHHHHHHHHHcC
Confidence 999999999999998865442111111 11122334444555554444321 234433 22 257888888887764
Q ss_pred E
Q 009066 523 I 523 (545)
Q Consensus 523 ~ 523 (545)
|
T Consensus 911 i 911 (1060)
T PLN03218 911 V 911 (1060)
T ss_pred C
Confidence 4
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=5.5e-59 Score=497.20 Aligned_cols=478 Identities=21% Similarity=0.323 Sum_probs=408.2
Q ss_pred CCChhhHHHHHHHHHcCCCCHHHHHHHHhcCC-----CCCeehHHHHHHHHHhCCCHHHHHHHHhhCC----cCCHhHHH
Q 009066 35 QPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP-----IKDTASWNTMISGFVQKKNMAKARDLFLAMP----EKNSVSWS 105 (545)
Q Consensus 35 ~~~~~~~~~li~~~~~~~g~~~~A~~~~~~m~-----~~d~~~~~~li~~~~~~g~~~~a~~~~~~~~----~~~~~~~~ 105 (545)
.++.++|+++|.++.+. |++++|+++|+.|. .||..+|+.++.+|++.++++.|.+++..|. .||..++|
T Consensus 84 ~~~~~~~~~~i~~l~~~-g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n 162 (697)
T PLN03081 84 RKSGVSLCSQIEKLVAC-GRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMN 162 (697)
T ss_pred CCCceeHHHHHHHHHcC-CCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHH
Confidence 45677999999999999 99999999999996 4688999999999999999999999999987 58999999
Q ss_pred HHHHHHHHcCChHHHHHHHhhCCCCCcccHHHHHHHhcchhhhccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc
Q 009066 106 AMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHL 185 (545)
Q Consensus 106 ~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~ 185 (545)
.|+++|+++|++++|.++|++|++||+++||++|.+| .+.|++++|+++|++|.+.|+.||..||+.++.+|++.
T Consensus 163 ~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~-----~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~ 237 (697)
T PLN03081 163 RVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGL-----VDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGL 237 (697)
T ss_pred HHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHH-----HHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Q 009066 186 SSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMK 265 (545)
Q Consensus 186 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 265 (545)
|..+.++++|..+.+.|+.+|..++++|+++|+++|++++|.++|++|.++|+++||+||.+|+++|+.++|+++|++|.
T Consensus 238 ~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~ 317 (697)
T PLN03081 238 GSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMR 317 (697)
T ss_pred CcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhCCCCCCHhHHH
Q 009066 266 DEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFG 345 (545)
Q Consensus 266 ~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~ 345 (545)
+.|+.||..||+.++.+|++.|++++|.+++..|.+. |+.|+..+|++|+++|+++|++++|.++|++|. +||..+|+
T Consensus 318 ~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~-g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~-~~d~~t~n 395 (697)
T PLN03081 318 DSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRT-GFPLDIVANTALVDLYSKWGRMEDARNVFDRMP-RKNLISWN 395 (697)
T ss_pred HcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHh-CCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC-CCCeeeHH
Confidence 9999999999999999999999999999999999886 999999999999999999999999999999996 58999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhcCC--CCCCchhHHHHHHHHHHcCCchHHHHHHHHhhh-CCCccCCceeEEEECCEE
Q 009066 346 TLLSACRVHKRLDLAEFAAMNLFNLN--PANAAGCYVQLANIYAAMKKWDDVARIRLSMKE-NNVVKMPGYSWIEVGTVV 422 (545)
Q Consensus 346 ~li~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-~~~~~~~~~s~~~~~~~~ 422 (545)
+||.+|+++|+.++|.++|++|.+.+ |+.. +|..++.+|++.|++++|.++|+.|.+ .|+.|+.. .++..+
T Consensus 396 ~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~--T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~----~y~~li 469 (697)
T PLN03081 396 ALIAGYGNHGRGTKAVEMFERMIAEGVAPNHV--TFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAM----HYACMI 469 (697)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHH--HHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCcc----chHhHH
Confidence 99999999999999999999998754 5543 999999999999999999999999975 57775431 111111
Q ss_pred EEEecCCCCCCChHHHHHHHHHHHHHHHHcCcccCCcccccccchhhHhhhhhhchHHHH-HHHHhccCCCCCcEEEecc
Q 009066 423 HEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVKEQLLLFHSEKLA-IAFGLIKVPLGTPIRVFKN 501 (545)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~l~~~~~~m~~~g~~pd~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~~~~~~~~~~~~~~~~ 501 (545)
..+.. .+ .++++.+.++++++.||..+|...+..+...+.+- ..+..+ ..+++.+...+..+.+.+-
T Consensus 470 ~~l~r----~G-------~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~-~a~~~~~~l~~~~p~~~~~y~~L~~~ 537 (697)
T PLN03081 470 ELLGR----EG-------LLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLE-LGRLAAEKLYGMGPEKLNNYVVLLNL 537 (697)
T ss_pred HHHHh----cC-------CHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcH-HHHHHHHHHhCCCCCCCcchHHHHHH
Confidence 11211 11 24556666778899999998855444333222110 011111 1123323222333445566
Q ss_pred ccccccccchHHHhhhhccceEEE-------ecCCccccccCCc
Q 009066 502 LRVCGDCHRATKYISAIEKREIIV-------RDTTRFHHFKDGT 538 (545)
Q Consensus 502 ~~~~~~~~~~~~~~s~~~~~~~~~-------~d~~~~h~~~~g~ 538 (545)
+..+|+..+|.++...|..+.+.. --.+..|.|-.|-
T Consensus 538 y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d 581 (697)
T PLN03081 538 YNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGD 581 (697)
T ss_pred HHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCC
Confidence 788999999999999998885421 2234566676553
No 6
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=3.8e-56 Score=478.24 Aligned_cols=401 Identities=16% Similarity=0.250 Sum_probs=375.0
Q ss_pred CCCccHHHHHHHHHHhCCCChHHHHHHHccCCCCChhhHHHHHHHHHcCCCCHHHHHHHHhcCC----CCCeehHHHHHH
Q 009066 3 VKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP----IKDTASWNTMIS 78 (545)
Q Consensus 3 ~~~~~~~~~li~~~~~~g~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~~g~~~~A~~~~~~m~----~~d~~~~~~li~ 78 (545)
+++..+++.++..|.+.|. +++|.++|+.|+.||..+||.+|.+|++. |+++.|+++|+.|. .||..+|++||.
T Consensus 403 ~~~~v~~~~li~~~~~~g~-~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~-g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~ 480 (1060)
T PLN03218 403 DMDKIYHAKFFKACKKQRA-VKEAFRFAKLIRNPTLSTFNMLMSVCASS-QDIDGALRVLRLVQEAGLKADCKLYTTLIS 480 (1060)
T ss_pred CchHHHHHHHHHHHHHCCC-HHHHHHHHHHcCCCCHHHHHHHHHHHHhC-cCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 3567788899999999999 99999999999999999999999999999 99999999999997 689999999999
Q ss_pred HHHhCCCHHHHHHHHhhCC----cCCHhHHHHHHHHHHHcCChHHHHHHHhhCC----CCCcccHHHHHHHhcchhhhcc
Q 009066 79 GFVQKKNMAKARDLFLAMP----EKNSVSWSAMISGYIECGQLDKAVELFKVAP----VKSVVAWTAMISGYMKFGYVEN 150 (545)
Q Consensus 79 ~~~~~g~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~ 150 (545)
+|++.|++++|.++|++|. .||..+|++||.+|++.|++++|.++|++|. .||.++||.||.+| .+.
T Consensus 481 ~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~-----~k~ 555 (1060)
T PLN03218 481 TCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISAC-----GQS 555 (1060)
T ss_pred HHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-----HHC
Confidence 9999999999999999998 5899999999999999999999999999986 57899999999999 999
Q ss_pred CChHHHHHHHHHHHh--CCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHH
Q 009066 151 SWAEDGLKLLRMMIG--LGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK 228 (545)
Q Consensus 151 g~~~~A~~~~~~m~~--~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~ 228 (545)
|++++|.++|.+|.. .|+.||..||++++.+|++.|++++|.++|+.|.+.|+.|+..+|+++|.+|++.|++++|.+
T Consensus 556 G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~ 635 (1060)
T PLN03218 556 GAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALS 635 (1060)
T ss_pred CCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHH
Confidence 999999999999986 679999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccC----CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHhHHhcC
Q 009066 229 LFLEIQR----KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYG 304 (545)
Q Consensus 229 ~f~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 304 (545)
+|++|.+ ||..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|+.|.+. |
T Consensus 636 lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~-g 714 (1060)
T PLN03218 636 IYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSI-K 714 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-C
Confidence 9999984 7999999999999999999999999999999999999999999999999999999999999999875 9
Q ss_pred CCCCHHHHHHHHHHHhHcCCHHHHHHHHHhC---CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHH
Q 009066 305 IAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM---PFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQ 381 (545)
Q Consensus 305 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~ 381 (545)
+.|+..+|++||.+|++.|++++|.++|++| ++.||..+|++++.+|++.|++++|..++.+|.+.+..+...+|..
T Consensus 715 ~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tyns 794 (1060)
T PLN03218 715 LRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRC 794 (1060)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 9999999999999999999999999999998 7889999999999999999999999999999988654333338888
Q ss_pred HHHHHH----HcC-------------------CchHHHHHHHHhhhCCCccCC
Q 009066 382 LANIYA----AMK-------------------KWDDVARIRLSMKENNVVKMP 411 (545)
Q Consensus 382 l~~~~~----~~g-------------------~~~~a~~~~~~m~~~~~~~~~ 411 (545)
|+.+|. +++ ..++|..+|++|.+.|+.|+.
T Consensus 795 LIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~ 847 (1060)
T PLN03218 795 ITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTM 847 (1060)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCH
Confidence 887643 222 235799999999999998763
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.96 E-value=4e-25 Score=246.11 Aligned_cols=390 Identities=14% Similarity=0.097 Sum_probs=301.4
Q ss_pred CCCccHHHHHHHHHHhCCCChHHHHHHHccCC--CC-ChhhHHHHHHHHHcCCCCHHHHHHHHhcCC---CCCeehHHHH
Q 009066 3 VKTTVNWNSVLAGFAKQRGKLKDAQELFDKIP--QP-DVVSYNIMLSCILLNSDDVVAAFDFFQRLP---IKDTASWNTM 76 (545)
Q Consensus 3 ~~~~~~~~~li~~~~~~g~~~~~A~~~f~~~~--~~-~~~~~~~li~~~~~~~g~~~~A~~~~~~m~---~~d~~~~~~l 76 (545)
++++.+++.+...|...|+ +++|.+.|+++. .| +...+..+...+... |++++|.+.|+++. +.+..++..+
T Consensus 462 ~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~l 539 (899)
T TIGR02917 462 PDNASLHNLLGAIYLGKGD-LAKAREAFEKALSIEPDFFPAAANLARIDIQE-GNPDDAIQRFEKVLTIDPKNLRAILAL 539 (899)
T ss_pred CCCcHHHHHHHHHHHhCCC-HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCcCcHHHHHHH
Confidence 4567788889999999998 999999998875 23 445566777777777 89999999998876 4466788888
Q ss_pred HHHHHhCCCHHHHHHHHhhCCc---CCHhHHHHHHHHHHHcCChHHHHHHHhhCCC---CCcccHHHHHHHhcchhhhcc
Q 009066 77 ISGFVQKKNMAKARDLFLAMPE---KNSVSWSAMISGYIECGQLDKAVELFKVAPV---KSVVAWTAMISGYMKFGYVEN 150 (545)
Q Consensus 77 i~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~ 150 (545)
...+.+.|+.++|...++++.. .+...+..++..|.+.|++++|..+++.+.. .+...|..+...+ ...
T Consensus 540 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~ 614 (899)
T TIGR02917 540 AGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQ-----LAA 614 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH-----HHc
Confidence 8888889999999999888753 3456777888888888888888888887652 3556788888888 888
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHH
Q 009066 151 SWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 230 (545)
Q Consensus 151 g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f 230 (545)
|++++|+..|+++.+.. +.+...+..+..++...|++++|..+++.+.+.. +.+...+..++..+.+.|++++|.+++
T Consensus 615 ~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 692 (899)
T TIGR02917 615 GDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIA 692 (899)
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 88888888888887653 3456677778888888888888888888888764 445677788888888888888888888
Q ss_pred HhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCC
Q 009066 231 LEIQR---KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAA 307 (545)
Q Consensus 231 ~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~ 307 (545)
+.+.+ .+...+..+...+...|++++|+..|+++...+ |+..++..+..++...|+.++|.+.++.+.+ ..+.
T Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~--~~~~ 768 (899)
T TIGR02917 693 KSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLK--THPN 768 (899)
T ss_pred HHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCC
Confidence 88764 355677777888888888888888888887753 4446666777788888888888888887776 3355
Q ss_pred CHHHHHHHHHHHhHcCCHHHHHHHHHhC-CC-CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHH
Q 009066 308 KPDHYTCMVDLLGRAGKLVEAVDLIKKM-PF-KPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANI 385 (545)
Q Consensus 308 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~ 385 (545)
+...+..+...|.+.|+.++|.+.|+++ .. .++..+++.+...+...|+ .+|+..++++++..|+++. .+..++.+
T Consensus 769 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~-~~~~~~~~ 846 (899)
T TIGR02917 769 DAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPA-ILDTLGWL 846 (899)
T ss_pred CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcH-HHHHHHHH
Confidence 6777888888888888888888888776 22 2356677777777777777 6688888887777777776 77777777
Q ss_pred HHHcCCchHHHHHHHHhhhCCC
Q 009066 386 YAAMKKWDDVARIRLSMKENNV 407 (545)
Q Consensus 386 ~~~~g~~~~a~~~~~~m~~~~~ 407 (545)
|...|++++|.++++++.+.+.
T Consensus 847 ~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 847 LVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred HHHcCCHHHHHHHHHHHHhhCC
Confidence 7778888888888877776553
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.96 E-value=4.8e-25 Score=245.47 Aligned_cols=387 Identities=13% Similarity=0.069 Sum_probs=336.3
Q ss_pred CCccHHHHHHHHHHhCCCChHHHHHHHccCCC---CChhhHHHHHHHHHcCCCCHHHHHHHHhcCC---CCCeehHHHHH
Q 009066 4 KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQ---PDVVSYNIMLSCILLNSDDVVAAFDFFQRLP---IKDTASWNTMI 77 (545)
Q Consensus 4 ~~~~~~~~li~~~~~~g~~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~~g~~~~A~~~~~~m~---~~d~~~~~~li 77 (545)
........++..|.+.|+ +++|.++++.+.. ++...|+.+...+... |++++|.+.|+++. +.+...+..+.
T Consensus 429 ~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~la 506 (899)
T TIGR02917 429 ELGRADLLLILSYLRSGQ-FDKALAAAKKLEKKQPDNASLHNLLGAIYLGK-GDLAKAREAFEKALSIEPDFFPAAANLA 506 (899)
T ss_pred cchhhHHHHHHHHHhcCC-HHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhC-CCHHHHHHHHHHHHhhCCCcHHHHHHHH
Confidence 345567778899999999 9999999998872 4566888888888888 99999999999876 44566788889
Q ss_pred HHHHhCCCHHHHHHHHhhCCc---CCHhHHHHHHHHHHHcCChHHHHHHHhhCCC---CCcccHHHHHHHhcchhhhccC
Q 009066 78 SGFVQKKNMAKARDLFLAMPE---KNSVSWSAMISGYIECGQLDKAVELFKVAPV---KSVVAWTAMISGYMKFGYVENS 151 (545)
Q Consensus 78 ~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~g 151 (545)
..+...|++++|.+.|+++.. .+..++..+...|.+.|+.++|...|+++.. .+...+..++..| ...|
T Consensus 507 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~ 581 (899)
T TIGR02917 507 RIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYY-----LGKG 581 (899)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHH-----HHCC
Confidence 999999999999999998873 4677899999999999999999999988753 3456788889999 9999
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHH
Q 009066 152 WAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFL 231 (545)
Q Consensus 152 ~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~ 231 (545)
++++|+.+++++.+.. +.+..+|..+..++...|++++|...++.+.+.. +.+...+..+..+|.+.|++++|..+|+
T Consensus 582 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 659 (899)
T TIGR02917 582 QLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLK 659 (899)
T ss_pred CHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999998753 5577889999999999999999999999998875 4566778889999999999999999999
Q ss_pred hccC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCC
Q 009066 232 EIQR---KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK 308 (545)
Q Consensus 232 ~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~ 308 (545)
++.+ .+..+|..++..+...|++++|..+++.+.... +++...+..+...+...|++++|.+.++.+... .|+
T Consensus 660 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~---~~~ 735 (899)
T TIGR02917 660 RALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKR---APS 735 (899)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh---CCC
Confidence 8864 367899999999999999999999999998864 446677888888999999999999999998864 566
Q ss_pred HHHHHHHHHHHhHcCCHHHHHHHHHhC--CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHH
Q 009066 309 PDHYTCMVDLLGRAGKLVEAVDLIKKM--PFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIY 386 (545)
Q Consensus 309 ~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~ 386 (545)
..++..++.++.+.|+.++|.+.++++ ....+...+..+...|...|+.++|...|+++.+..|+++. ++..++.++
T Consensus 736 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~~l~~~~ 814 (899)
T TIGR02917 736 SQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAV-VLNNLAWLY 814 (899)
T ss_pred chHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHH
Confidence 688888999999999999999999887 22346778899999999999999999999999999999887 999999999
Q ss_pred HHcCCchHHHHHHHHhhhC
Q 009066 387 AAMKKWDDVARIRLSMKEN 405 (545)
Q Consensus 387 ~~~g~~~~a~~~~~~m~~~ 405 (545)
...|+ ++|...++++.+.
T Consensus 815 ~~~~~-~~A~~~~~~~~~~ 832 (899)
T TIGR02917 815 LELKD-PRALEYAEKALKL 832 (899)
T ss_pred HhcCc-HHHHHHHHHHHhh
Confidence 99999 8899999988764
No 9
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=99.95 E-value=7.6e-29 Score=196.54 Aligned_cols=106 Identities=67% Similarity=1.053 Sum_probs=95.7
Q ss_pred ceeEEEECCEEEEEecCCCCCCChHHHHHHHHHHHHHHHHcCcccCCcccccccchhhH--------hhhhhhchHHHHH
Q 009066 412 GYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFALHAVGEEVK--------EQLLLFHSEKLAI 483 (545)
Q Consensus 412 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~m~~~g~~pd~~~~~~~~~~~~~--------~~~~~~~~~~~a~ 483 (545)
|+||+++ |.|++||.+||+. ++..++...||.|++....|+++++++ +..+..||||||+
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAi 69 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAI 69 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHH
Confidence 6789887 9999999999987 456677889999999999998776554 4578999999999
Q ss_pred HHHhccCCCCCcEEEeccc-cccccccchHHHhhhhccceEEEecCCcccccc
Q 009066 484 AFGLIKVPLGTPIRVFKNL-RVCGDCHRATKYISAIEKREIIVRDTTRFHHFK 535 (545)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~~~~~~~d~~~~h~~~ 535 (545)
+||++++ +|+||+ |+|+|||+|+|+||++++|+|+|||++|||||+
T Consensus 70 afgli~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 70 AFGLINT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred Hhcccce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 9999988 889998 999999999999999999999999999999996
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.88 E-value=4.2e-20 Score=185.28 Aligned_cols=294 Identities=11% Similarity=0.094 Sum_probs=202.3
Q ss_pred HHHHcCChHHHHHHHhhCCCC---CcccHHHHHHHhcchhhhccCChHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHh
Q 009066 110 GYIECGQLDKAVELFKVAPVK---SVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPN---ASSLSSVLLGCS 183 (545)
Q Consensus 110 ~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~pd---~~t~~~ll~~~~ 183 (545)
.+...|++++|...|.++... +..+|..+...+ ...|++++|+.+++.+...+..++ ..++..+...+.
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~-----~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~ 118 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLF-----RRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYL 118 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHH-----HHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 344555556666665555422 223455555555 666666666666666654321111 134555555666
Q ss_pred ccCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhccCCC--------hhhHHHHHHHHHHcCChH
Q 009066 184 HLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKD--------VVTWNAMISGYAQHGKGE 255 (545)
Q Consensus 184 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~--------~~~~~~li~~~~~~g~~~ 255 (545)
..|+++.|..++..+.+.. +.+..+++.++.+|.+.|++++|.+.|+.+.+.+ ...|..+...+.+.|+++
T Consensus 119 ~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 197 (389)
T PRK11788 119 KAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLD 197 (389)
T ss_pred HCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHH
Confidence 6666666666666666542 3345566666777777777777777776665321 123456677778888888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhC
Q 009066 256 KALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335 (545)
Q Consensus 256 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 335 (545)
+|+..|+++.+.. +.+...+..+...+.+.|++++|.++++++.+. .......++..++.+|.+.|++++|...++++
T Consensus 198 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 275 (389)
T PRK11788 198 AARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQ-DPEYLSEVLPKLMECYQALGDEAEGLEFLRRA 275 (389)
T ss_pred HHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8888888887643 223456667778888888999999888888753 11122456788889999999999999998887
Q ss_pred -CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHH---cCCchHHHHHHHHhhhCCCccCC
Q 009066 336 -PFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAA---MKKWDDVARIRLSMKENNVVKMP 411 (545)
Q Consensus 336 -~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~~~~~~~~ 411 (545)
...|+...+..++..+.+.|++++|..+++++++..|++. .+..++..+.. .|+.+++..++++|.++++.++|
T Consensus 276 ~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~--~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 276 LEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR--GFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKP 353 (389)
T ss_pred HHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH--HHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCC
Confidence 4457777778888999999999999999999999999876 56666666554 55899999999999999999888
Q ss_pred ce
Q 009066 412 GY 413 (545)
Q Consensus 412 ~~ 413 (545)
..
T Consensus 354 ~~ 355 (389)
T PRK11788 354 RY 355 (389)
T ss_pred CE
Confidence 63
No 11
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.88 E-value=3.4e-20 Score=178.33 Aligned_cols=350 Identities=13% Similarity=0.131 Sum_probs=186.4
Q ss_pred hHHHHHHHHHcCCCCHHHHHHHHhcCC---CCCeehHHHHHHHHHhCCCHHHHHHHHhhCCcCCH---hHHHHHHHHHHH
Q 009066 40 SYNIMLSCILLNSDDVVAAFDFFQRLP---IKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNS---VSWSAMISGYIE 113 (545)
Q Consensus 40 ~~~~li~~~~~~~g~~~~A~~~~~~m~---~~d~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~li~~~~~ 113 (545)
+|..+-..+-.. |++++|+.+++.+. +..+..|..+..++...|+.+.|.+.|...+.-|+ -+.+.+.+....
T Consensus 118 ~ysn~aN~~ker-g~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka 196 (966)
T KOG4626|consen 118 AYSNLANILKER-GQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKA 196 (966)
T ss_pred HHHHHHHHHHHh-chHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHh
Confidence 454455444444 66666666666554 22345566666666666666666666655553222 223334445555
Q ss_pred cCChHHHHHHHhhCCC--CC-cccHHHHHHHhcchhhhccCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCcHH
Q 009066 114 CGQLDKAVELFKVAPV--KS-VVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPN-ASSLSSVLLGCSHLSSLQ 189 (545)
Q Consensus 114 ~g~~~~A~~~f~~~~~--~~-~~~~~~li~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~pd-~~t~~~ll~~~~~~~~~~ 189 (545)
.|++++|...+.+..+ |. .+.|+.|...+ -.+|+...|+..|.+.++. .|+ ...|..+...|...+.++
T Consensus 197 ~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f-----~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d 269 (966)
T KOG4626|consen 197 EGRLEEAKACYLKAIETQPCFAIAWSNLGCVF-----NAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFD 269 (966)
T ss_pred hcccchhHHHHHHHHhhCCceeeeehhcchHH-----hhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcch
Confidence 5666666665554332 22 24566666665 5566666666666665542 333 235555555565566666
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhccC--C-ChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 009066 190 LGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR--K-DVVTWNAMISGYAQHGKGEKALRLFDKMKD 266 (545)
Q Consensus 190 ~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 266 (545)
.|...|..+.... +....++..|...|...|.++-|+..|++..+ | -...||.|..++-..|+..+|.+.|.+.+.
T Consensus 270 ~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~ 348 (966)
T KOG4626|consen 270 RAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR 348 (966)
T ss_pred HHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH
Confidence 6665555555443 22334444455555555666666655555543 2 234555555555555555566555555554
Q ss_pred cCCCCC-HHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHhHcCCHHHHHHHHHhC-CCCCCH-h
Q 009066 267 EGMKPD-SITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK-PDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKPQP-A 342 (545)
Q Consensus 267 ~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~ 342 (545)
. .|+ ....+.|...+...|.+++|..+|..... +.|. ....+.|...|-..|++++|+..|++. .++|+. .
T Consensus 349 l--~p~hadam~NLgni~~E~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAd 423 (966)
T KOG4626|consen 349 L--CPNHADAMNNLGNIYREQGKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFAD 423 (966)
T ss_pred h--CCccHHHHHHHHHHHHHhccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHH
Confidence 2 222 23455555555555555555555555443 1222 344555555555555555555555554 445543 3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchHHHHHHHHhhh
Q 009066 343 IFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKE 404 (545)
Q Consensus 343 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 404 (545)
.++.+...|...|+.+.|...+.+++..+|.... ++..|+.+|-.+|+..+|..-++...+
T Consensus 424 a~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~Ae-AhsNLasi~kDsGni~~AI~sY~~aLk 484 (966)
T KOG4626|consen 424 ALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAE-AHSNLASIYKDSGNIPEAIQSYRTALK 484 (966)
T ss_pred HHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHH-HHhhHHHHhhccCCcHHHHHHHHHHHc
Confidence 5555555555555555555555555555555555 555555555555555555555555443
No 12
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.87 E-value=2.2e-20 Score=179.66 Aligned_cols=382 Identities=16% Similarity=0.198 Sum_probs=321.4
Q ss_pred CccHHHHHHHHHHhCCCChHHHHHHHccCCC--C-ChhhHHHHHHHHHcCCCCHHHHHHHHhcCC--CCCeehH-HHHHH
Q 009066 5 TTVNWNSVLAGFAKQRGKLKDAQELFDKIPQ--P-DVVSYNIMLSCILLNSDDVVAAFDFFQRLP--IKDTASW-NTMIS 78 (545)
Q Consensus 5 ~~~~~~~li~~~~~~g~~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~~g~~~~A~~~~~~m~--~~d~~~~-~~li~ 78 (545)
-..+|..+.+.+-..|+ +.+|...+..+.+ | .+..|-.+-.++... |+.+.|.+.|.... .|+.+.. +.+..
T Consensus 115 ~ae~ysn~aN~~kerg~-~~~al~~y~~aiel~p~fida~inla~al~~~-~~~~~a~~~~~~alqlnP~l~ca~s~lgn 192 (966)
T KOG4626|consen 115 GAEAYSNLANILKERGQ-LQDALALYRAAIELKPKFIDAYINLAAALVTQ-GDLELAVQCFFEALQLNPDLYCARSDLGN 192 (966)
T ss_pred HHHHHHHHHHHHHHhch-HHHHHHHHHHHHhcCchhhHHHhhHHHHHHhc-CCCcccHHHHHHHHhcCcchhhhhcchhH
Confidence 34578888899999999 9999999999873 4 345788888888888 99999999998877 4554433 33445
Q ss_pred HHHhCCCHHHHHHHHhhCCcCC---HhHHHHHHHHHHHcCChHHHHHHHhhCCCCCc---ccHHHHHHHhcchhhhccCC
Q 009066 79 GFVQKKNMAKARDLFLAMPEKN---SVSWSAMISGYIECGQLDKAVELFKVAPVKSV---VAWTAMISGYMKFGYVENSW 152 (545)
Q Consensus 79 ~~~~~g~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~g~~~~g~ 152 (545)
..-..|++++|...|.+.++.+ ..+|+.|...+-..|++..|..-|++...-|+ ..|-.|...| ...+.
T Consensus 193 Llka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~-----ke~~~ 267 (966)
T KOG4626|consen 193 LLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVY-----KEARI 267 (966)
T ss_pred HHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHH-----HHHhc
Confidence 5666899999999999887543 46899999999999999999999998876554 5788888888 88999
Q ss_pred hHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHH
Q 009066 153 AEDGLKLLRMMIGLGIRPN-ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFL 231 (545)
Q Consensus 153 ~~~A~~~~~~m~~~~~~pd-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~ 231 (545)
+++|+..+.+.... .|+ ...+..+...|-..|.++.|...|++.++.. +.-...|+.|.+++-..|++.+|.+.|.
T Consensus 268 ~d~Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYn 344 (966)
T KOG4626|consen 268 FDRAVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYN 344 (966)
T ss_pred chHHHHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHH
Confidence 99999999888764 554 5678888888999999999999999999875 3346789999999999999999999999
Q ss_pred hccC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCC
Q 009066 232 EIQR---KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPD-SITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAA 307 (545)
Q Consensus 232 ~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~ 307 (545)
+... ....+.+.|...|...|.+++|..+|....+ +.|. ...++.|...|-++|++++|+..+++.. .+.|
T Consensus 345 kaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P 419 (966)
T KOG4626|consen 345 KALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKP 419 (966)
T ss_pred HHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCc
Confidence 8874 3567899999999999999999999999887 4555 4578889999999999999999999887 4577
Q ss_pred C-HHHHHHHHHHHhHcCCHHHHHHHHHhC-CCCCCH-hHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHH
Q 009066 308 K-PDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKPQP-AIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLAN 384 (545)
Q Consensus 308 ~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~ 384 (545)
+ ...|+.+...|-..|+.++|...+.+. .+.|.- ..++.|.+.|...|+..+|+..++..+++.|+.+. +|-.++.
T Consensus 420 ~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpd-A~cNllh 498 (966)
T KOG4626|consen 420 TFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPD-AYCNLLH 498 (966)
T ss_pred hHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCch-hhhHHHH
Confidence 7 688999999999999999999999887 677764 68899999999999999999999999999999998 8999988
Q ss_pred HHHHcCCchHHHHHHHHh
Q 009066 385 IYAAMKKWDDVARIRLSM 402 (545)
Q Consensus 385 ~~~~~g~~~~a~~~~~~m 402 (545)
+..-..+|.+-.+-++++
T Consensus 499 ~lq~vcdw~D~d~~~~kl 516 (966)
T KOG4626|consen 499 CLQIVCDWTDYDKRMKKL 516 (966)
T ss_pred HHHHHhcccchHHHHHHH
Confidence 887777887744444433
No 13
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.87 E-value=1.8e-18 Score=182.79 Aligned_cols=389 Identities=14% Similarity=0.086 Sum_probs=286.2
Q ss_pred HHHHHHHHHhCCCChHHHHHHHccCC--CCChhhHHHHHHHHHcCCCCHHHHHHHHhcCC---CCCeehHHHHHHHHHhC
Q 009066 9 WNSVLAGFAKQRGKLKDAQELFDKIP--QPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP---IKDTASWNTMISGFVQK 83 (545)
Q Consensus 9 ~~~li~~~~~~g~~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~~g~~~~A~~~~~~m~---~~d~~~~~~li~~~~~~ 83 (545)
+..+...|.+.|+ +++|.+.|++.. .|+...|..+-.+|.+. |++++|++.++... +.+...|..+..+|...
T Consensus 130 ~k~~G~~~~~~~~-~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l-~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 130 LKEKGNKAYRNKD-FNKAIKLYSKAIECKPDPVYYSNRAACHNAL-GDWEKVVEDTTAALELDPDYSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHHHHcCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHHHh-CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 4456778888898 999999998876 57777788888888888 99999999998876 33556888899999999
Q ss_pred CCHHHHHHHHhhCCcC---CHhHHHHHHHHHHHcCChHHHHHHHhhCCCCCcccHHHHHH--------------------
Q 009066 84 KNMAKARDLFLAMPEK---NSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMIS-------------------- 140 (545)
Q Consensus 84 g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~-------------------- 140 (545)
|++++|+.-|...... +......++.-+.+......+...++.-+. +..++..+..
T Consensus 208 g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (615)
T TIGR00990 208 GKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPE-NLPSVTFVGNYLQSFRPKPRPAGLEDSNEL 286 (615)
T ss_pred CCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCCHHHHHHHHHHccCCcchhhhhccccc
Confidence 9999998877654321 111111111111111112223333322111 1111111111
Q ss_pred ------Hhcchhh-----hccCChHHHHHHHHHHHhCC-CCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHhCCCCCCc
Q 009066 141 ------GYMKFGY-----VENSWAEDGLKLLRMMIGLG-IRP-NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDT 207 (545)
Q Consensus 141 ------~~~~~g~-----~~~g~~~~A~~~~~~m~~~~-~~p-d~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 207 (545)
++...|. ...+++++|++.|++....+ ..| +...+..+...+...|++++|...++..++.. +.+.
T Consensus 287 ~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~ 365 (615)
T TIGR00990 287 DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVT 365 (615)
T ss_pred ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcH
Confidence 0000000 12367899999999998764 334 44567777788889999999999999999874 3345
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 009066 208 TALTPLISMYCKCGDLEDACKLFLEIQR---KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 284 (545)
Q Consensus 208 ~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 284 (545)
..+..+...|...|++++|...|++..+ .+...|..+...+...|++++|+..|++.++.. +.+...+..+..++.
T Consensus 366 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~ 444 (615)
T TIGR00990 366 QSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQY 444 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHH
Confidence 6788899999999999999999998764 367889999999999999999999999998853 224566777788899
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhC-CCCCCH-h-------HHHHHHHHHHhcC
Q 009066 285 HAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKPQP-A-------IFGTLLSACRVHK 355 (545)
Q Consensus 285 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~-------~~~~li~~~~~~g 355 (545)
+.|++++|...|+...+ ..+.++..+..+..+|...|++++|.+.|++. ...|+. . .++..+..+...|
T Consensus 445 ~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~ 522 (615)
T TIGR00990 445 KEGSIASSMATFRRCKK--NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQ 522 (615)
T ss_pred HCCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhh
Confidence 99999999999999886 34556889999999999999999999999886 333421 1 1222223344569
Q ss_pred CHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchHHHHHHHHhhhC
Q 009066 356 RLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKEN 405 (545)
Q Consensus 356 ~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 405 (545)
++++|+.+++++++++|++.. ++..++.++...|++++|.+.+++..+.
T Consensus 523 ~~~eA~~~~~kAl~l~p~~~~-a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 523 DFIEAENLCEKALIIDPECDI-AVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred hHHHHHHHHHHHHhcCCCcHH-HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 999999999999999999887 8999999999999999999999987653
No 14
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.87 E-value=3.1e-18 Score=192.77 Aligned_cols=380 Identities=10% Similarity=0.021 Sum_probs=255.3
Q ss_pred HHHHHhCCCChHHHHHHHccCC--CC-ChhhHHHHHHHHHcCCCCHHHHHHHHhcCC--CCCe---ehHHH---------
Q 009066 13 LAGFAKQRGKLKDAQELFDKIP--QP-DVVSYNIMLSCILLNSDDVVAAFDFFQRLP--IKDT---ASWNT--------- 75 (545)
Q Consensus 13 i~~~~~~g~~~~~A~~~f~~~~--~~-~~~~~~~li~~~~~~~g~~~~A~~~~~~m~--~~d~---~~~~~--------- 75 (545)
...+...|+ +++|...|++.. .| +...+..+-..+.+. |++++|+..|++.. .|+. ..|..
T Consensus 276 G~~~~~~g~-~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~-g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~ 353 (1157)
T PRK11447 276 GLAAVDSGQ-GGKAIPELQQAVRANPKDSEALGALGQAYSQQ-GDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWL 353 (1157)
T ss_pred HHHHHHCCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHH
Confidence 344445555 666666555544 23 333444444555555 56666666555544 1211 11111
Q ss_pred ---HHHHHHhCCCHHHHHHHHhhCCc---CCHhHHHHHHHHHHHcCChHHHHHHHhhCCCC---CcccH-----------
Q 009066 76 ---MISGFVQKKNMAKARDLFLAMPE---KNSVSWSAMISGYIECGQLDKAVELFKVAPVK---SVVAW----------- 135 (545)
Q Consensus 76 ---li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~---~~~~~----------- 135 (545)
....+.+.|++++|+..|+++.. .+...+..+...|...|++++|++.|++.... +...+
T Consensus 354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~ 433 (1157)
T PRK11447 354 LIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQS 433 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 12234455556666665555542 23444555555555556666665555544321 11122
Q ss_pred -------------------------------HHHHHHhcchhhhccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 009066 136 -------------------------------TAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSH 184 (545)
Q Consensus 136 -------------------------------~~li~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~ 184 (545)
..+...+ ...|++++|++.|++.++.. +-+...+..+...+.+
T Consensus 434 ~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~-----~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~ 507 (1157)
T PRK11447 434 PEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEAL-----ENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQ 507 (1157)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHH-----HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 2223334 56789999999999988753 2245567778888899
Q ss_pred cCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhccCCC----h---------hhHHHHHHHHHHc
Q 009066 185 LSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKD----V---------VTWNAMISGYAQH 251 (545)
Q Consensus 185 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~----~---------~~~~~li~~~~~~ 251 (545)
.|++++|...++.+++.. +.+...+..+...+.+.|+.++|...++.+.... . ..+..+...+...
T Consensus 508 ~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~ 586 (1157)
T PRK11447 508 AGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDS 586 (1157)
T ss_pred cCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHC
Confidence 999999999999988754 3344555556666778899999999998876421 1 1123456678889
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHH
Q 009066 252 GKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDL 331 (545)
Q Consensus 252 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 331 (545)
|+.++|+.+++. .+++...+..+...+...|+.++|+..|+.+.+. -+.++..+..++.+|...|++++|++.
T Consensus 587 G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~ 659 (1157)
T PRK11447 587 GKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQ 659 (1157)
T ss_pred CCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999872 2445556677888899999999999999999873 355688899999999999999999999
Q ss_pred HHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCc-----hhHHHHHHHHHHcCCchHHHHHHHHhh-
Q 009066 332 IKKM-PFKP-QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAA-----GCYVQLANIYAAMKKWDDVARIRLSMK- 403 (545)
Q Consensus 332 ~~~m-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~-----~~~~~l~~~~~~~g~~~~a~~~~~~m~- 403 (545)
++.. ...| +...+..+..++...|++++|..++++++...|+++. ..+..++.++...|++++|...++...
T Consensus 660 l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 660 LAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9987 3344 4566777888899999999999999999987765432 145567899999999999999998875
Q ss_pred hCCCc
Q 009066 404 ENNVV 408 (545)
Q Consensus 404 ~~~~~ 408 (545)
..|+.
T Consensus 740 ~~~~~ 744 (1157)
T PRK11447 740 ASGIT 744 (1157)
T ss_pred hcCCC
Confidence 34443
No 15
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.86 E-value=4.5e-19 Score=177.88 Aligned_cols=280 Identities=15% Similarity=0.132 Sum_probs=194.6
Q ss_pred HhCCCHHHHHHHHhhCCc---CCHhHHHHHHHHHHHcCChHHHHHHHhhCCCCC-------cccHHHHHHHhcchhhhcc
Q 009066 81 VQKKNMAKARDLFLAMPE---KNSVSWSAMISGYIECGQLDKAVELFKVAPVKS-------VVAWTAMISGYMKFGYVEN 150 (545)
Q Consensus 81 ~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~-------~~~~~~li~~~~~~g~~~~ 150 (545)
...|++++|...|.++.+ .+..++..+...|...|++++|..+++.+.... ...+..+...| ...
T Consensus 46 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~-----~~~ 120 (389)
T PRK11788 46 LLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDY-----LKA 120 (389)
T ss_pred HhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH-----HHC
Confidence 344555555555555442 123344555555555555555555555443211 12345555566 666
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhCCCCCCc----ccHHHHHHHHHhcCCHHHH
Q 009066 151 SWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDT----TALTPLISMYCKCGDLEDA 226 (545)
Q Consensus 151 g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~----~~~~~li~~y~~~g~~~~A 226 (545)
|++++|+.+|.++.+.. +++..++..++..+...|++++|.+.++.+.+.+..+.. ..+..+...+.+.|++++|
T Consensus 121 g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 121 GLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred CCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 66666666666666542 334556666666666666666666666666655422211 1345577778888999999
Q ss_pred HHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHhHHhc
Q 009066 227 CKLFLEIQR---KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDY 303 (545)
Q Consensus 227 ~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 303 (545)
...|+++.+ .+...+..+...|.+.|++++|+++|+++...+..+...++..+..++...|++++|...++.+.+.
T Consensus 200 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~- 278 (389)
T PRK11788 200 RALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE- 278 (389)
T ss_pred HHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 999988764 2456788888999999999999999999987543333456788889999999999999999998764
Q ss_pred CCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhC-CCCCCHhHHHHHHHHHHh---cCCHHHHHHHHHHHhc
Q 009066 304 GIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKPQPAIFGTLLSACRV---HKRLDLAEFAAMNLFN 369 (545)
Q Consensus 304 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~ 369 (545)
.|+...+..++..+.+.|++++|..+++++ ...|+...++.++..+.. +|+.+++..+++++++
T Consensus 279 --~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 279 --YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred --CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence 567777789999999999999999999876 556999999988887664 5688899999988875
No 16
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.84 E-value=1.5e-17 Score=175.40 Aligned_cols=348 Identities=10% Similarity=0.040 Sum_probs=273.2
Q ss_pred HhCCCChHHHHHHHccCCC--C----ChhhHHHHHHHHHcCCCCHHHHHHHHhcCC---CCCeehHHHHHHHHHhCCCHH
Q 009066 17 AKQRGKLKDAQELFDKIPQ--P----DVVSYNIMLSCILLNSDDVVAAFDFFQRLP---IKDTASWNTMISGFVQKKNMA 87 (545)
Q Consensus 17 ~~~g~~~~~A~~~f~~~~~--~----~~~~~~~li~~~~~~~g~~~~A~~~~~~m~---~~d~~~~~~li~~~~~~g~~~ 87 (545)
.|+.+ ++.-.-.|..-++ + +..-.-..+....+. |++++|+.+++... +.+...+..++.+....|+++
T Consensus 16 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~ 93 (656)
T PRK15174 16 LKQED-WEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRK-DETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPD 93 (656)
T ss_pred hhhhc-hhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhc-CCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHH
Confidence 34555 7766667766663 1 112233345567778 99999999998876 445667777888888899999
Q ss_pred HHHHHHhhCCc---CCHhHHHHHHHHHHHcCChHHHHHHHhhCCC---CCcccHHHHHHHhcchhhhccCChHHHHHHHH
Q 009066 88 KARDLFLAMPE---KNSVSWSAMISGYIECGQLDKAVELFKVAPV---KSVVAWTAMISGYMKFGYVENSWAEDGLKLLR 161 (545)
Q Consensus 88 ~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~g~~~~A~~~~~ 161 (545)
+|...|+++.. .+..++..+...+...|++++|...|++... .+...|..+...+ ...|++++|...++
T Consensus 94 ~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l-----~~~g~~~eA~~~~~ 168 (656)
T PRK15174 94 AVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTL-----VLMDKELQAISLAR 168 (656)
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH-----HHCCChHHHHHHHH
Confidence 99999999873 3567888999999999999999999988653 3556888889999 99999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhccC---CCh
Q 009066 162 MMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR---KDV 238 (545)
Q Consensus 162 ~m~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~ 238 (545)
++...... +...+.. +..+...|++++|...++.+++....++......+...+.+.|++++|...|++... .+.
T Consensus 169 ~~~~~~P~-~~~a~~~-~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~ 246 (656)
T PRK15174 169 TQAQEVPP-RGDMIAT-CLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGA 246 (656)
T ss_pred HHHHhCCC-CHHHHHH-HHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCH
Confidence 88765322 2333333 345788899999999999988875444445556667889999999999999998874 366
Q ss_pred hhHHHHHHHHHHcCChHH----HHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHH
Q 009066 239 VTWNAMISGYAQHGKGEK----ALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTC 314 (545)
Q Consensus 239 ~~~~~li~~~~~~g~~~~----A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 314 (545)
..+..+...|.+.|++++ |+..|++..+.. +.+...+..+...+...|++++|...++...+. -+.+...+..
T Consensus 247 ~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~ 323 (656)
T PRK15174 247 ALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAM 323 (656)
T ss_pred HHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHH
Confidence 788889999999999986 899999998753 224567788889999999999999999998863 2445677888
Q ss_pred HHHHHhHcCCHHHHHHHHHhC-CCCCCHhHH-HHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCc
Q 009066 315 MVDLLGRAGKLVEAVDLIKKM-PFKPQPAIF-GTLLSACRVHKRLDLAEFAAMNLFNLNPANAA 376 (545)
Q Consensus 315 li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 376 (545)
+..+|.+.|++++|...++++ ...|+...+ ..+..++...|+.++|...|+++++..|++..
T Consensus 324 La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~ 387 (656)
T PRK15174 324 YARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLP 387 (656)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhch
Confidence 999999999999999999988 345665443 44567789999999999999999999988653
No 17
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.84 E-value=3.3e-17 Score=184.49 Aligned_cols=315 Identities=15% Similarity=0.112 Sum_probs=172.1
Q ss_pred HHHHHhCCCHHHHHHHHhhCCc---CCHhHHHHHHHHHHHcCChHHHHHHHhhCCCCCc-----ccHHHHH---------
Q 009066 77 ISGFVQKKNMAKARDLFLAMPE---KNSVSWSAMISGYIECGQLDKAVELFKVAPVKSV-----VAWTAMI--------- 139 (545)
Q Consensus 77 i~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~-----~~~~~li--------- 139 (545)
...+...|++++|+..|++.+. .+..++..|...|.+.|++++|+..|++..+.+. ..|..++
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~ 355 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLI 355 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHH
Confidence 4456677888888888877663 3566777777888888888888887776543211 1232222
Q ss_pred ---HHhcchhhhccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhCCCCCCcccHHHHHHH
Q 009066 140 ---SGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISM 216 (545)
Q Consensus 140 ---~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 216 (545)
..+ ...|++++|+..|+++.+.. +.+...+..+..++...|++++|.+.|+.+++.. +.+...+..+...
T Consensus 356 ~~g~~~-----~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l 428 (1157)
T PRK11447 356 QQGDAA-----LKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANL 428 (1157)
T ss_pred HHHHHH-----HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 233 56777888888888777653 3345566666777777788888888888777654 2233333334443
Q ss_pred ------------------------------------------HHhcCCHHHHHHHHHhccC--C-ChhhHHHHHHHHHHc
Q 009066 217 ------------------------------------------YCKCGDLEDACKLFLEIQR--K-DVVTWNAMISGYAQH 251 (545)
Q Consensus 217 ------------------------------------------y~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~ 251 (545)
+...|++++|.+.|++..+ | +...+..+...|.+.
T Consensus 429 ~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~ 508 (1157)
T PRK11447 429 YRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQA 508 (1157)
T ss_pred HHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 3444555555555555442 1 333444555555555
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCH---------HHHHHHHHHHhHc
Q 009066 252 GKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKP---------DHYTCMVDLLGRA 322 (545)
Q Consensus 252 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~---------~~~~~li~~~~~~ 322 (545)
|++++|+..|+++.+... .+...+..+...+...++.++|...++.+... ...++. ..+..+.+.+...
T Consensus 509 G~~~~A~~~l~~al~~~P-~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~-~~~~~~~~l~~~l~~~~~l~~a~~l~~~ 586 (1157)
T PRK11447 509 GQRSQADALMRRLAQQKP-NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRA-QWNSNIQELAQRLQSDQVLETANRLRDS 586 (1157)
T ss_pred CCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCch-hcChhHHHHHHHHhhhHHHHHHHHHHHC
Confidence 555555555555554211 12222222223344455555555555543211 000000 0011223344445
Q ss_pred CCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchHHHHHHHHh
Q 009066 323 GKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSM 402 (545)
Q Consensus 323 g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 402 (545)
|+.++|.++++.-| ++...+..+...+...|++++|+..|+++++.+|++.. ++..++.+|...|++++|.+.++..
T Consensus 587 G~~~eA~~~l~~~p--~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~-a~~~la~~~~~~g~~~eA~~~l~~l 663 (1157)
T PRK11447 587 GKEAEAEALLRQQP--PSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNAD-ARLGLIEVDIAQGDLAAARAQLAKL 663 (1157)
T ss_pred CCHHHHHHHHHhCC--CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 55555555554322 23334455555566666666666666666666666555 5666666666666666666666554
Q ss_pred h
Q 009066 403 K 403 (545)
Q Consensus 403 ~ 403 (545)
.
T Consensus 664 l 664 (1157)
T PRK11447 664 P 664 (1157)
T ss_pred h
Confidence 4
No 18
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.82 E-value=2.1e-16 Score=170.32 Aligned_cols=384 Identities=9% Similarity=0.004 Sum_probs=287.0
Q ss_pred HHHHHHHHhCCCChHHHHHHHccCCC---CChhhHHHHHHHHHcCCCCHHHHHHHHhcCC---CCCeehHHHHHHHHHhC
Q 009066 10 NSVLAGFAKQRGKLKDAQELFDKIPQ---PDVVSYNIMLSCILLNSDDVVAAFDFFQRLP---IKDTASWNTMISGFVQK 83 (545)
Q Consensus 10 ~~li~~~~~~g~~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~~g~~~~A~~~~~~m~---~~d~~~~~~li~~~~~~ 83 (545)
.=.+......|+ .++|.+++..... .+...+..+...+... |++++|..+|++.. +.+...+..+...+...
T Consensus 19 ~d~~~ia~~~g~-~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~-g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~ 96 (765)
T PRK10049 19 ADWLQIALWAGQ-DAEVITVYNRYRVHMQLPARGYAAVAVAYRNL-KQWQNSLTLWQKALSLEPQNDDYQRGLILTLADA 96 (765)
T ss_pred HHHHHHHHHcCC-HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 335566777888 9999999988763 2333477777777777 99999999999965 44566788888999999
Q ss_pred CCHHHHHHHHhhCCc---CCHhHHHHHHHHHHHcCChHHHHHHHhhCCCC---CcccHHHHHHHhcchhhhccCChHHHH
Q 009066 84 KNMAKARDLFLAMPE---KNSVSWSAMISGYIECGQLDKAVELFKVAPVK---SVVAWTAMISGYMKFGYVENSWAEDGL 157 (545)
Q Consensus 84 g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~g~~~~A~ 157 (545)
|++++|+..+++... .+.. +..+..++...|+.++|...++++... +...+..+...+ ...+..++|+
T Consensus 97 g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l-----~~~~~~e~Al 170 (765)
T PRK10049 97 GQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQAL-----RNNRLSAPAL 170 (765)
T ss_pred CCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-----HHCCChHHHH
Confidence 999999999998873 3556 888999999999999999999887643 445566777777 7889999999
Q ss_pred HHHHHHHhCCCCCCHH------HHHHHHHHHh-----ccCcH---HHHHHHHHHHHhC-CCCCCcc-cH-HH---HHHHH
Q 009066 158 KLLRMMIGLGIRPNAS------SLSSVLLGCS-----HLSSL---QLGKQVHQLVFKS-PLCKDTT-AL-TP---LISMY 217 (545)
Q Consensus 158 ~~~~~m~~~~~~pd~~------t~~~ll~~~~-----~~~~~---~~a~~~~~~~~~~-g~~~~~~-~~-~~---li~~y 217 (545)
+.+++... .|+.. ....++.... ..+.+ ++|.+.++.+.+. ...|+.. .+ .+ .+.++
T Consensus 171 ~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~L 247 (765)
T PRK10049 171 GAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGAL 247 (765)
T ss_pred HHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHH
Confidence 98876653 33320 1111222221 12233 6788888888764 2223221 11 11 12344
Q ss_pred HhcCCHHHHHHHHHhccCCC---hh-hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHccCcHH
Q 009066 218 CKCGDLEDACKLFLEIQRKD---VV-TWNAMISGYAQHGKGEKALRLFDKMKDEGMKP---DSITFVALLLACNHAGLVD 290 (545)
Q Consensus 218 ~~~g~~~~A~~~f~~~~~~~---~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~ 290 (545)
...|++++|+..|+.+.+.+ +. .-..+...|...|++++|+..|+++....... .......+..++...|+++
T Consensus 248 l~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~ 327 (765)
T PRK10049 248 LARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYP 327 (765)
T ss_pred HHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHH
Confidence 57799999999999998642 11 12225778999999999999999987643211 1244556667889999999
Q ss_pred HHHHHHHHhHHhcC----------CCCC---HHHHHHHHHHHhHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcC
Q 009066 291 LGIQYFDSMVNDYG----------IAAK---PDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKP-QPAIFGTLLSACRVHK 355 (545)
Q Consensus 291 ~a~~~~~~~~~~~~----------~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g 355 (545)
+|.++++.+..... -.|+ ...+..+..++...|++++|+++++++ ...| +...+..+...+...|
T Consensus 328 eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g 407 (765)
T PRK10049 328 GALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARG 407 (765)
T ss_pred HHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 99999999876310 0122 235567888999999999999999987 3334 5678999999999999
Q ss_pred CHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchHHHHHHHHhhhC
Q 009066 356 RLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKEN 405 (545)
Q Consensus 356 ~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 405 (545)
++++|+..++++++++|++.. .+..++..+...|++++|..+++.+.+.
T Consensus 408 ~~~~A~~~l~~al~l~Pd~~~-l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 408 WPRAAENELKKAEVLEPRNIN-LEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred CHHHHHHHHHHHHhhCCCChH-HHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 999999999999999999988 8999999999999999999999998764
No 19
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.82 E-value=1.3e-16 Score=168.46 Aligned_cols=341 Identities=11% Similarity=-0.003 Sum_probs=273.9
Q ss_pred CCHHHHHHHHhcCCC------CCeehHHHHHHHHHhCCCHHHHHHHHhhCCc---CCHhHHHHHHHHHHHcCChHHHHHH
Q 009066 53 DDVVAAFDFFQRLPI------KDTASWNTMISGFVQKKNMAKARDLFLAMPE---KNSVSWSAMISGYIECGQLDKAVEL 123 (545)
Q Consensus 53 g~~~~A~~~~~~m~~------~d~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~ 123 (545)
.+++.-.-.|...++ .+..-..-++..+.+.|++++|..+++.... .+......++......|++++|...
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~ 98 (656)
T PRK15174 19 EDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQV 98 (656)
T ss_pred hchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHH
Confidence 566666666666551 1233455667788899999999999998873 3566777777888889999999999
Q ss_pred HhhCCC---CCcccHHHHHHHhcchhhhccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHh
Q 009066 124 FKVAPV---KSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK 200 (545)
Q Consensus 124 f~~~~~---~~~~~~~~li~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 200 (545)
|+++.. .+...|..+...+ .+.|++++|+..|+++.+.. +.+...+..+..++...|++++|...++.+..
T Consensus 99 l~~~l~~~P~~~~a~~~la~~l-----~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~ 172 (656)
T PRK15174 99 VNKLLAVNVCQPEDVLLVASVL-----LKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQ 172 (656)
T ss_pred HHHHHHhCCCChHHHHHHHHHH-----HHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 998763 3456788888888 99999999999999998752 33566788888899999999999999998877
Q ss_pred CCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhccCC----ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHH
Q 009066 201 SPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK----DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITF 276 (545)
Q Consensus 201 ~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 276 (545)
.... +...+..+ ..+...|++++|...++.+.+. +...+..+...+.+.|++++|+..|+++.... +.+...+
T Consensus 173 ~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~ 249 (656)
T PRK15174 173 EVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALR 249 (656)
T ss_pred hCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHH
Confidence 6533 33333333 3478899999999999987653 23345556778899999999999999999864 2345667
Q ss_pred HHHHHHHHccCcHHH----HHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhC-CCCCC-HhHHHHHHHH
Q 009066 277 VALLLACNHAGLVDL----GIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKPQ-PAIFGTLLSA 350 (545)
Q Consensus 277 ~~ll~a~~~~g~~~~----a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~li~~ 350 (545)
..+..++...|++++ |...+++..+. .+.+...+..+...+.+.|++++|...+++. ...|+ ...+..+..+
T Consensus 250 ~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~ 327 (656)
T PRK15174 250 RSLGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARA 327 (656)
T ss_pred HHHHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 778889999999986 89999988863 3456788999999999999999999999987 44454 5677888899
Q ss_pred HHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchHHHHHHHHhhhC
Q 009066 351 CRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKEN 405 (545)
Q Consensus 351 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 405 (545)
+...|++++|...++++.+.+|++.. .+..++.++...|++++|...+++..+.
T Consensus 328 l~~~G~~~eA~~~l~~al~~~P~~~~-~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 328 LRQVGQYTAASDEFVQLAREKGVTSK-WNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHCCCHHHHHHHHHHHHHhCccchH-HHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999875 6667788999999999999999988764
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.81 E-value=3.9e-16 Score=168.26 Aligned_cols=367 Identities=9% Similarity=-0.015 Sum_probs=278.6
Q ss_pred CCCccHHHHHHHHHHhCCCChHHHHHHHccCC--CC-ChhhHHHHHHHHHcCCCCHHHHHHHHhcCC---CCCeehHHHH
Q 009066 3 VKTTVNWNSVLAGFAKQRGKLKDAQELFDKIP--QP-DVVSYNIMLSCILLNSDDVVAAFDFFQRLP---IKDTASWNTM 76 (545)
Q Consensus 3 ~~~~~~~~~li~~~~~~g~~~~~A~~~f~~~~--~~-~~~~~~~li~~~~~~~g~~~~A~~~~~~m~---~~d~~~~~~l 76 (545)
+.+...+..+...+.+.|+ +++|.++|++.. .| +...+..+...+... |++++|+..+++.. +.+.. |..+
T Consensus 46 ~~~a~~~~~lA~~~~~~g~-~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~-g~~~eA~~~l~~~l~~~P~~~~-~~~l 122 (765)
T PRK10049 46 QLPARGYAAVAVAYRNLKQ-WQNSLTLWQKALSLEPQNDDYQRGLILTLADA-GQYDEALVKAKQLVSGAPDKAN-LLAL 122 (765)
T ss_pred CCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCCCCHH-HHHH
Confidence 4455568889999999999 999999999964 34 445566777778888 99999999999886 34556 8888
Q ss_pred HHHHHhCCCHHHHHHHHhhCCc---CCHhHHHHHHHHHHHcCChHHHHHHHhhCCCCCcc--------cHHHHHHHhcch
Q 009066 77 ISGFVQKKNMAKARDLFLAMPE---KNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVV--------AWTAMISGYMKF 145 (545)
Q Consensus 77 i~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~--------~~~~li~~~~~~ 145 (545)
..++...|+.++|+..++++.+ .+..++..+...+...|..+.|.+.++.... ++. ....++......
T Consensus 123 a~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~ 201 (765)
T PRK10049 123 AYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMP 201 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhccc
Confidence 8999999999999999999884 3566777888899999999999999988775 211 222233322111
Q ss_pred hhhccCCh---HHHHHHHHHHHhC-CCCCCHH-HHH----HHHHHHhccCcHHHHHHHHHHHHhCCCC-CCcccHHHHHH
Q 009066 146 GYVENSWA---EDGLKLLRMMIGL-GIRPNAS-SLS----SVLLGCSHLSSLQLGKQVHQLVFKSPLC-KDTTALTPLIS 215 (545)
Q Consensus 146 g~~~~g~~---~~A~~~~~~m~~~-~~~pd~~-t~~----~ll~~~~~~~~~~~a~~~~~~~~~~g~~-~~~~~~~~li~ 215 (545)
+....+++ ++|++.++.+.+. ...|+.. .+. ..+.++...+++++|...|+.+.+.+.+ |+ .....+..
T Consensus 202 ~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~-~a~~~la~ 280 (765)
T PRK10049 202 TRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPP-WAQRWVAS 280 (765)
T ss_pred ccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCH-HHHHHHHH
Confidence 11223344 7889999998854 2233321 111 1134556779999999999999988632 22 22233678
Q ss_pred HHHhcCCHHHHHHHHHhccCCC-------hhhHHHHHHHHHHcCChHHHHHHHHHHHHcCC-----------CCCH---H
Q 009066 216 MYCKCGDLEDACKLFLEIQRKD-------VVTWNAMISGYAQHGKGEKALRLFDKMKDEGM-----------KPDS---I 274 (545)
Q Consensus 216 ~y~~~g~~~~A~~~f~~~~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-----------~p~~---~ 274 (545)
.|...|++++|+..|+++.+.+ ...+..+..++.+.|++++|+.+++++..... .|+. .
T Consensus 281 ~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~ 360 (765)
T PRK10049 281 AYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQ 360 (765)
T ss_pred HHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHH
Confidence 9999999999999999986532 23456677788999999999999999987521 2332 2
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhC-CCCCC-HhHHHHHHHHHH
Q 009066 275 TFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKPQ-PAIFGTLLSACR 352 (545)
Q Consensus 275 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~li~~~~ 352 (545)
.+..+...+...|+.++|++.++++.. ..+.+...+..+..++...|++++|++.+++. ...|+ ...+..++..+.
T Consensus 361 a~~~~a~~l~~~g~~~eA~~~l~~al~--~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al 438 (765)
T PRK10049 361 GQSLLSQVAKYSNDLPQAEMRARELAY--NAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTAL 438 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Confidence 345566788899999999999999986 34666889999999999999999999999988 55575 567777778899
Q ss_pred hcCCHHHHHHHHHHHhcCCCCCCc
Q 009066 353 VHKRLDLAEFAAMNLFNLNPANAA 376 (545)
Q Consensus 353 ~~g~~~~A~~~~~~~~~~~p~~~~ 376 (545)
..|++++|+.+++++++..|++..
T Consensus 439 ~~~~~~~A~~~~~~ll~~~Pd~~~ 462 (765)
T PRK10049 439 DLQEWRQMDVLTDDVVAREPQDPG 462 (765)
T ss_pred HhCCHHHHHHHHHHHHHhCCCCHH
Confidence 999999999999999999999974
No 21
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.77 E-value=1.5e-14 Score=156.50 Aligned_cols=382 Identities=12% Similarity=0.077 Sum_probs=266.2
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHccCCC--CChhh-HHHHHHHHHcCCCCHHHHHHHHhcCCCCCeehHHHHHHHHHhCC
Q 009066 8 NWNSVLAGFAKQRGKLKDAQELFDKIPQ--PDVVS-YNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKK 84 (545)
Q Consensus 8 ~~~~li~~~~~~g~~~~~A~~~f~~~~~--~~~~~-~~~li~~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g 84 (545)
..-.+...|.+.++ +++|.+++.++.+ |.... +..+-..|.++.++ ++|..++....+.|...+..+...|.+.|
T Consensus 184 L~L~~~rlY~~l~d-w~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G 261 (987)
T PRK09782 184 LRTDLLQRAIYLKQ-WSQADTLYNEARQQNTLSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRG 261 (987)
T ss_pred HHHHHHHHHHHHhC-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCC
Confidence 33444888888888 9999999888873 33332 44444456652245 77878776544567778888888888888
Q ss_pred CHHHHHHHHhhCCc------------------------------------------------------------------
Q 009066 85 NMAKARDLFLAMPE------------------------------------------------------------------ 98 (545)
Q Consensus 85 ~~~~a~~~~~~~~~------------------------------------------------------------------ 98 (545)
+.++|.++++++..
T Consensus 262 ~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (987)
T PRK09782 262 EKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPA 341 (987)
T ss_pred CHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCc
Confidence 88888888888760
Q ss_pred -------------------------------C-CHhHHHHHHHHHHHcCChHHHHHHHhhCCC--CCc----ccHHHHHH
Q 009066 99 -------------------------------K-NSVSWSAMISGYIECGQLDKAVELFKVAPV--KSV----VAWTAMIS 140 (545)
Q Consensus 99 -------------------------------~-~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~~----~~~~~li~ 140 (545)
| +....--+.-...+.|+.++|.++|+.... ++. ..-+-++.
T Consensus 342 ~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~ 421 (987)
T PRK09782 342 NEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLAS 421 (987)
T ss_pred chHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHH
Confidence 0 111111122223345556666666654432 111 12224455
Q ss_pred HhcchhhhccCC---hHHHHHH-------------------------HHHHHhCCCCC--CHHHHHHHHHHHhccCcHHH
Q 009066 141 GYMKFGYVENSW---AEDGLKL-------------------------LRMMIGLGIRP--NASSLSSVLLGCSHLSSLQL 190 (545)
Q Consensus 141 ~~~~~g~~~~g~---~~~A~~~-------------------------~~~m~~~~~~p--d~~t~~~ll~~~~~~~~~~~ 190 (545)
.| ..++. ..+++.+ +...... -++ +...+..+..++.. ++.++
T Consensus 422 ~~-----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~-~p~~~~~~a~~~LG~~l~~-~~~~e 494 (987)
T PRK09782 422 LL-----ESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGD-MSPSYDAAAWNRLAKCYRD-TLPGV 494 (987)
T ss_pred HH-----HhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhccc-CCCCCCHHHHHHHHHHHHh-CCcHH
Confidence 55 22222 2222222 2222211 123 45566666655555 78888
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhccC--CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 009066 191 GKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR--KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEG 268 (545)
Q Consensus 191 a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 268 (545)
|...+....... |+......+...+...|++++|...|+++.. ++...+..+...+.+.|+.++|...+++..+..
T Consensus 495 Ai~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~ 572 (987)
T PRK09782 495 ALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG 572 (987)
T ss_pred HHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 988777777654 4443333445555689999999999998764 445567777888999999999999999998754
Q ss_pred CCCCH-HHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhC-CCCC-CHhHHH
Q 009066 269 MKPDS-ITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKP-QPAIFG 345 (545)
Q Consensus 269 ~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~ 345 (545)
|+. ..+..+.......|++++|...+++..+. .|+...|..+..++.+.|+.++|...+++. ...| +...++
T Consensus 573 --P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l---~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~ 647 (987)
T PRK09782 573 --LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI---APSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQA 647 (987)
T ss_pred --CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 443 33333444555679999999999998853 677889999999999999999999999988 4556 456788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchHHHHHHHHhhhCC
Q 009066 346 TLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENN 406 (545)
Q Consensus 346 ~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 406 (545)
.+..++...|++++|+..++++++.+|++.. .+..++.++...|++++|...+++..+..
T Consensus 648 nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~-a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 648 ALGYALWDSGDIAQSREMLERAHKGLPDDPA-LIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 8888999999999999999999999999988 99999999999999999999999987643
No 22
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.77 E-value=2.1e-15 Score=159.67 Aligned_cols=349 Identities=11% Similarity=0.011 Sum_probs=253.9
Q ss_pred HHHHHHHcCCCCHHHHHHHHhcCC--CCCeehHHHHHHHHHhCCCHHHHHHHHhhCCc---CCHhHHHHHHHHHHHcCCh
Q 009066 43 IMLSCILLNSDDVVAAFDFFQRLP--IKDTASWNTMISGFVQKKNMAKARDLFLAMPE---KNSVSWSAMISGYIECGQL 117 (545)
Q Consensus 43 ~li~~~~~~~g~~~~A~~~~~~m~--~~d~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~ 117 (545)
..-..+.+. |++++|+..|++.. .|+...|..+..+|.+.|++++|++.+...++ .+..++..+..+|...|++
T Consensus 132 ~~G~~~~~~-~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~ 210 (615)
T TIGR00990 132 EKGNKAYRN-KDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKY 210 (615)
T ss_pred HHHHHHHHc-CCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCH
Confidence 445567777 99999999999876 67778899999999999999999999998874 3466888899999999999
Q ss_pred HHHHHHHhhCCCCCc---ccHHHHHHHhcchhhhccCChHHHHHHHHHHHhCCC--CCCHHH------------------
Q 009066 118 DKAVELFKVAPVKSV---VAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGI--RPNASS------------------ 174 (545)
Q Consensus 118 ~~A~~~f~~~~~~~~---~~~~~li~~~~~~g~~~~g~~~~A~~~~~~m~~~~~--~pd~~t------------------ 174 (545)
++|..-|......+. .....++..+ .. ..+........+... .|....
T Consensus 211 ~eA~~~~~~~~~~~~~~~~~~~~~~~~~-----l~----~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (615)
T TIGR00990 211 ADALLDLTASCIIDGFRNEQSAQAVERL-----LK----KFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLE 281 (615)
T ss_pred HHHHHHHHHHHHhCCCccHHHHHHHHHH-----HH----HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhh
Confidence 999987765432111 1111111111 00 111111111111100 000000
Q ss_pred ------------HHHHHHH---HhccCcHHHHHHHHHHHHhCC-C-CCCcccHHHHHHHHHhcCCHHHHHHHHHhccC--
Q 009066 175 ------------LSSVLLG---CSHLSSLQLGKQVHQLVFKSP-L-CKDTTALTPLISMYCKCGDLEDACKLFLEIQR-- 235 (545)
Q Consensus 175 ------------~~~ll~~---~~~~~~~~~a~~~~~~~~~~g-~-~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~-- 235 (545)
+..+... ....+.+++|.+.|+.+++.+ . +.....++.+...|...|++++|...|++..+
T Consensus 282 ~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~ 361 (615)
T TIGR00990 282 DSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD 361 (615)
T ss_pred cccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 0000000 122367889999999998875 2 33456788889999999999999999998875
Q ss_pred C-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHH
Q 009066 236 K-DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTC 314 (545)
Q Consensus 236 ~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 314 (545)
| +..+|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|...|+...+. .+.+...+..
T Consensus 362 P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~~ 438 (615)
T TIGR00990 362 PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHIQ 438 (615)
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHHH
Confidence 3 35688889999999999999999999998753 335677888888999999999999999998863 3456788889
Q ss_pred HHHHHhHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHH-------HHHH
Q 009066 315 MVDLLGRAGKLVEAVDLIKKM-PFKP-QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQ-------LANI 385 (545)
Q Consensus 315 li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~-------l~~~ 385 (545)
+..++.+.|++++|+..|++. ...| +...|+.+...+...|++++|+..|++++++.|.... .+.. .+..
T Consensus 439 la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~-~~~~~~~l~~~a~~~ 517 (615)
T TIGR00990 439 LGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKP-MYMNVLPLINKALAL 517 (615)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCcccc-ccccHHHHHHHHHHH
Confidence 999999999999999999987 3345 4678899999999999999999999999999987543 3221 1223
Q ss_pred HHHcCCchHHHHHHHHhhhC
Q 009066 386 YAAMKKWDDVARIRLSMKEN 405 (545)
Q Consensus 386 ~~~~g~~~~a~~~~~~m~~~ 405 (545)
+...|++++|.+++++..+.
T Consensus 518 ~~~~~~~~eA~~~~~kAl~l 537 (615)
T TIGR00990 518 FQWKQDFIEAENLCEKALII 537 (615)
T ss_pred HHHhhhHHHHHHHHHHHHhc
Confidence 34469999999999987664
No 23
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.76 E-value=2.9e-14 Score=151.13 Aligned_cols=386 Identities=13% Similarity=0.066 Sum_probs=283.9
Q ss_pred HHHHHhCCCChHHHHHHHccCCC--CChh-hHHHHHHHHHcCCCCHHHHHHHHhcCCCCCeehH-HHH--HHHHHhCCCH
Q 009066 13 LAGFAKQRGKLKDAQELFDKIPQ--PDVV-SYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASW-NTM--ISGFVQKKNM 86 (545)
Q Consensus 13 i~~~~~~g~~~~~A~~~f~~~~~--~~~~-~~~~li~~~~~~~g~~~~A~~~~~~m~~~d~~~~-~~l--i~~~~~~g~~ 86 (545)
+-..++.|+ ++.|+..|++..+ |+.. ....++..+... |+.++|+..+++...|+...+ ..+ ...|...|++
T Consensus 41 aii~~r~Gd-~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~-G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdy 118 (822)
T PRK14574 41 LIIRARAGD-TAPVLDYLQEESKAGPLQSGQVDDWLQIAGWA-GRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRW 118 (822)
T ss_pred HHHHHhCCC-HHHHHHHHHHHHhhCccchhhHHHHHHHHHHc-CCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCH
Confidence 345677898 9999999999874 5431 233777777888 999999999999986644433 333 4578888999
Q ss_pred HHHHHHHhhCCc---CCHhHHHHHHHHHHHcCChHHHHHHHhhCCCCCcccHHHHHHHhcchhhhccCChHHHHHHHHHH
Q 009066 87 AKARDLFLAMPE---KNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMM 163 (545)
Q Consensus 87 ~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~g~~~~A~~~~~~m 163 (545)
++|+++|+++.+ .++.++..++..|...++.++|++.++++...+......+..+|.. ...++..+|++.++++
T Consensus 119 d~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~---~~~~~~~~AL~~~ekl 195 (822)
T PRK14574 119 DQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLN---RATDRNYDALQASSEA 195 (822)
T ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHH---HhcchHHHHHHHHHHH
Confidence 999999999984 3567788888999999999999999999886655433335555522 2355666699999999
Q ss_pred HhCCCCCCHHHHHHHHHHHhccCcHHHHHHHH------------------------------------------------
Q 009066 164 IGLGIRPNASSLSSVLLGCSHLSSLQLGKQVH------------------------------------------------ 195 (545)
Q Consensus 164 ~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~------------------------------------------------ 195 (545)
.+.. +-+...+.....+..+.|....|.++.
T Consensus 196 l~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~ 274 (822)
T PRK14574 196 VRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADY 274 (822)
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHH
Confidence 8864 224445555555555555443333322
Q ss_pred HHHHhC-CC-CCCcccH-HH---HHHHHHhcCCHHHHHHHHHhccCC----ChhhHHHHHHHHHHcCChHHHHHHHHHHH
Q 009066 196 QLVFKS-PL-CKDTTAL-TP---LISMYCKCGDLEDACKLFLEIQRK----DVVTWNAMISGYAQHGKGEKALRLFDKMK 265 (545)
Q Consensus 196 ~~~~~~-g~-~~~~~~~-~~---li~~y~~~g~~~~A~~~f~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 265 (545)
+.+... +- ++....+ .+ .+-++.+.|++.++++.|+.+... ...+--.+..+|...+++++|+.+|+++.
T Consensus 275 ~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~ 354 (822)
T PRK14574 275 QNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLY 354 (822)
T ss_pred HHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHh
Confidence 222221 11 2221221 22 244566789999999999999853 23456678899999999999999999997
Q ss_pred HcCC-----CCCHHHHHHHHHHHHccCcHHHHHHHHHHhHHhcC----------CCCC---HHHHHHHHHHHhHcCCHHH
Q 009066 266 DEGM-----KPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYG----------IAAK---PDHYTCMVDLLGRAGKLVE 327 (545)
Q Consensus 266 ~~g~-----~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~----------~~~~---~~~~~~li~~~~~~g~~~~ 327 (545)
.... .++......|.-++..++++++|..+++.+.+... -.|+ ...+..++..+...|++.+
T Consensus 355 ~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~ 434 (822)
T PRK14574 355 YSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPT 434 (822)
T ss_pred hccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHH
Confidence 6431 22333356788899999999999999999976311 0122 2344567888899999999
Q ss_pred HHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchHHHHHHHHhhhC
Q 009066 328 AVDLIKKM-PFKP-QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKEN 405 (545)
Q Consensus 328 A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 405 (545)
|++.++++ ...| |...+..+...+...|.+.+|+..++.+..++|++.. +...++.++...|+|.+|.++.+...+.
T Consensus 435 Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~-~~~~~~~~al~l~e~~~A~~~~~~l~~~ 513 (822)
T PRK14574 435 AQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLI-LERAQAETAMALQEWHQMELLTDDVISR 513 (822)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHH-HHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 99999998 2334 7888999999999999999999999999999999988 9999999999999999999988777654
No 24
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.75 E-value=2.9e-14 Score=154.19 Aligned_cols=388 Identities=12% Similarity=0.048 Sum_probs=285.3
Q ss_pred CCccHHHHHHHHHHhCCCChHHHHHHHccCC-----CCChhhHHHHHHH------------------------------H
Q 009066 4 KTTVNWNSVLAGFAKQRGKLKDAQELFDKIP-----QPDVVSYNIMLSC------------------------------I 48 (545)
Q Consensus 4 ~~~~~~~~li~~~~~~g~~~~~A~~~f~~~~-----~~~~~~~~~li~~------------------------------~ 48 (545)
.|+.+...+.+.|.+.|+ .++|.+++.+++ +|+..+|--++.- +
T Consensus 245 ~d~~l~~ala~~yi~~G~-~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (987)
T PRK09782 245 TDPQSRITYATALAYRGE-KARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVL 323 (987)
T ss_pred cCHHHHHHHHHHHHHCCC-HHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHH
Confidence 356678899999999999 999999999987 2444555444332 2
Q ss_pred HcCCCCHHHHHHHHhcCC-----------------------------C--C-CeehHHHHHHHHHhCCCHHHHHHHHhhC
Q 009066 49 LLNSDDVVAAFDFFQRLP-----------------------------I--K-DTASWNTMISGFVQKKNMAKARDLFLAM 96 (545)
Q Consensus 49 ~~~~g~~~~A~~~~~~m~-----------------------------~--~-d~~~~~~li~~~~~~g~~~~a~~~~~~~ 96 (545)
.++ ++++.|.++...-+ . | +.....-+.-...+.|+.++|.++|+..
T Consensus 324 ~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~ 402 (987)
T PRK09782 324 LKE-GQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQR 402 (987)
T ss_pred Hhc-cHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHh
Confidence 222 44444444422111 0 1 2222222223355789999999999988
Q ss_pred Cc-C-----CHhHHHHHHHHHHHcCCh---HHHHHH-------------------------HhhCCC---C--CcccHHH
Q 009066 97 PE-K-----NSVSWSAMISGYIECGQL---DKAVEL-------------------------FKVAPV---K--SVVAWTA 137 (545)
Q Consensus 97 ~~-~-----~~~~~~~li~~~~~~g~~---~~A~~~-------------------------f~~~~~---~--~~~~~~~ 137 (545)
.+ + +....+-|+..|.+.+.+ ..|..+ +..... . +...|..
T Consensus 403 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~ 482 (987)
T PRK09782 403 YPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNR 482 (987)
T ss_pred cCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHH
Confidence 75 1 234556788888888773 333222 111111 1 4456777
Q ss_pred HHHHhcchhhhccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q 009066 138 MISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMY 217 (545)
Q Consensus 138 li~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 217 (545)
+..++ .. +++.+|+..|.+.... .|+......+..++...|++++|...++.+... +|+...+..+...+
T Consensus 483 LG~~l-----~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~al 552 (987)
T PRK09782 483 LAKCY-----RD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTA 552 (987)
T ss_pred HHHHH-----Hh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHH
Confidence 77776 55 7889999988888765 467655444555567899999999999998665 34445566778889
Q ss_pred HhcCCHHHHHHHHHhccCCChhhHHHHH---HHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHH
Q 009066 218 CKCGDLEDACKLFLEIQRKDVVTWNAMI---SGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ 294 (545)
Q Consensus 218 ~~~g~~~~A~~~f~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 294 (545)
.+.|+.++|...|++..+.++..++... ......|++++|+..|++..+. .|+...+..+..++.+.|+.++|..
T Consensus 553 l~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~ 630 (987)
T PRK09782 553 QAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVS 630 (987)
T ss_pred HHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 9999999999999988765443333333 3334559999999999999874 5678888899999999999999999
Q ss_pred HHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCC
Q 009066 295 YFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKP-QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNP 372 (545)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p 372 (545)
.+++.... .+.+...+..+...+...|++++|+..+++. ...| +...+..+..++...|++++|+..++++++++|
T Consensus 631 ~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P 708 (987)
T PRK09782 631 DLRAALEL--EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDID 708 (987)
T ss_pred HHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 99999863 3556788899999999999999999999987 4445 567899999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHcCCchHHHHHHHHhhhCCCc
Q 009066 373 ANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVV 408 (545)
Q Consensus 373 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 408 (545)
+... +............+++.+.+.+++.-..+..
T Consensus 709 ~~a~-i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~ 743 (987)
T PRK09782 709 NQAL-ITPLTPEQNQQRFNFRRLHEEVGRRWTFSFD 743 (987)
T ss_pred CCch-hhhhhhHHHHHHHHHHHHHHHHHHHhhcCcc
Confidence 9987 8888889999999999998888776655443
No 25
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.69 E-value=3.7e-13 Score=142.82 Aligned_cols=368 Identities=10% Similarity=0.008 Sum_probs=272.1
Q ss_pred HHHHHHHhCCCChHHHHHHHccCCCCChhhHHHHH--H-HHHcCCCCHHHHHHHHhcCC---CCCeehHHHHHHHHHhCC
Q 009066 11 SVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIML--S-CILLNSDDVVAAFDFFQRLP---IKDTASWNTMISGFVQKK 84 (545)
Q Consensus 11 ~li~~~~~~g~~~~~A~~~f~~~~~~~~~~~~~li--~-~~~~~~g~~~~A~~~~~~m~---~~d~~~~~~li~~~~~~g 84 (545)
.++..+...|+ .++|+..+++...|+...+..++ . .+... |++++|+++|+++. +.|...+..++..+...+
T Consensus 73 dll~l~~~~G~-~~~A~~~~eka~~p~n~~~~~llalA~ly~~~-gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~ 150 (822)
T PRK14574 73 DWLQIAGWAGR-DQEVIDVYERYQSSMNISSRGLASAARAYRNE-KRWDQALALWQSSLKKDPTNPDLISGMIMTQADAG 150 (822)
T ss_pred HHHHHHHHcCC-cHHHHHHHHHhccCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcC
Confidence 78888999999 99999999999887766666655 2 44455 99999999999988 335567777888899999
Q ss_pred CHHHHHHHHhhCCcCCH--hHHHHHHHHHHHcCChHHHHHHHhhCCCC---CcccHHHHHHHhcchh-------------
Q 009066 85 NMAKARDLFLAMPEKNS--VSWSAMISGYIECGQLDKAVELFKVAPVK---SVVAWTAMISGYMKFG------------- 146 (545)
Q Consensus 85 ~~~~a~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g------------- 146 (545)
+.++|++.++++...++ ..+-.++..+...++..+|.+.++++... +...+..+..+..+.|
T Consensus 151 q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p 230 (822)
T PRK14574 151 RGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENP 230 (822)
T ss_pred CHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCc
Confidence 99999999999885443 33434444444456665688888877632 2333344444443322
Q ss_pred ------------------hh---------ccCC---hHHHHHHHHHHHhC-CCCCC-HHH----HHHHHHHHhccCcHHH
Q 009066 147 ------------------YV---------ENSW---AEDGLKLLRMMIGL-GIRPN-ASS----LSSVLLGCSHLSSLQL 190 (545)
Q Consensus 147 ------------------~~---------~~g~---~~~A~~~~~~m~~~-~~~pd-~~t----~~~ll~~~~~~~~~~~ 190 (545)
.+ ...+ .+.|+.-++.+... +-.|. ..- ..-.+.++...++..+
T Consensus 231 ~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~ 310 (822)
T PRK14574 231 NLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTAD 310 (822)
T ss_pred cccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHH
Confidence 01 1111 23355555555431 22232 122 2234557788999999
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhccCC---------ChhhHHHHHHHHHHcCChHHHHHHH
Q 009066 191 GKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK---------DVVTWNAMISGYAQHGKGEKALRLF 261 (545)
Q Consensus 191 a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~---------~~~~~~~li~~~~~~g~~~~A~~~~ 261 (545)
+...|+.+...|.+....+-.++.++|...++.++|..+|.++... +......|.-+|...+++++|..++
T Consensus 311 vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l 390 (822)
T PRK14574 311 LIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFA 390 (822)
T ss_pred HHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHH
Confidence 9999999999887766778899999999999999999999998542 2333577889999999999999999
Q ss_pred HHHHHcCC-----------CCC--HHH-HHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHH
Q 009066 262 DKMKDEGM-----------KPD--SIT-FVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVE 327 (545)
Q Consensus 262 ~~m~~~g~-----------~p~--~~t-~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 327 (545)
+++.+... .|| -.. +..++..+...|++.+|.+.++.+.. .-+-|......+.+.+...|++.+
T Consensus 391 ~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~--~aP~n~~l~~~~A~v~~~Rg~p~~ 468 (822)
T PRK14574 391 VNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSS--TAPANQNLRIALASIYLARDLPRK 468 (822)
T ss_pred HHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHH
Confidence 99987322 122 223 33456778899999999999999976 457789999999999999999999
Q ss_pred HHHHHHhC-CCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHH
Q 009066 328 AVDLIKKM-PFKPQ-PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLAN 384 (545)
Q Consensus 328 A~~~~~~m-~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~ 384 (545)
|.+.++.. ...|+ ..+...++.++...+++++|..+.+.+.+..|++.. ...|-.
T Consensus 469 A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~--~~~l~r 525 (822)
T PRK14574 469 AEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIP--SQELDR 525 (822)
T ss_pred HHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchh--HHHHHH
Confidence 99999776 44564 466778888888999999999999999999999974 444444
No 26
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.66 E-value=2.1e-14 Score=134.02 Aligned_cols=205 Identities=12% Similarity=0.121 Sum_probs=161.0
Q ss_pred ccCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhcc---CCChhhHHHHHHHHHHcCChHHHHHH
Q 009066 184 HLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ---RKDVVTWNAMISGYAQHGKGEKALRL 260 (545)
Q Consensus 184 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~ 260 (545)
..|++++|.+.|.+.+...-......|| +.-.+-+.|++++|++.|-++. ..++...-.+.+.|-...+...|+++
T Consensus 502 ~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~ 580 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIEL 580 (840)
T ss_pred ecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHH
Confidence 4578888888888887654322223333 4445677888999988887664 35777777788888888888889888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhC-CCCC
Q 009066 261 FDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKP 339 (545)
Q Consensus 261 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p 339 (545)
+.+.... ++.|...+..|...|-+.|+-.+|.+.+-.-.+ -++.+.++..-|..-|....-.++|+.+|++. -++|
T Consensus 581 ~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp 657 (840)
T KOG2003|consen 581 LMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQP 657 (840)
T ss_pred HHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCc
Confidence 8776543 445666777888889999999888888755443 45778888888888888888899999999987 5779
Q ss_pred CHhHHHHHHHHH-HhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCch
Q 009066 340 QPAIFGTLLSAC-RVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWD 393 (545)
Q Consensus 340 ~~~~~~~li~~~-~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~ 393 (545)
+..-|..++..| ++.|++++|..+++..-...|.+.. +...|++++...|..+
T Consensus 658 ~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedld-clkflvri~~dlgl~d 711 (840)
T KOG2003|consen 658 NQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLD-CLKFLVRIAGDLGLKD 711 (840)
T ss_pred cHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchH-HHHHHHHHhccccchh
Confidence 999999998765 6789999999999999999999988 8999999999888543
No 27
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.63 E-value=3.3e-13 Score=137.44 Aligned_cols=395 Identities=13% Similarity=0.115 Sum_probs=261.1
Q ss_pred CCCCCccHHHHHHHHHHhCCCChHHHHHHHccCCCCC------hhhHHHHHHHHHcCCCCHHHHHHHHhcCC--CCCe--
Q 009066 1 MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPD------VVSYNIMLSCILLNSDDVVAAFDFFQRLP--IKDT-- 70 (545)
Q Consensus 1 ~~~~~~~~~~~li~~~~~~g~~~~~A~~~f~~~~~~~------~~~~~~li~~~~~~~g~~~~A~~~~~~m~--~~d~-- 70 (545)
+++.++.+.|.|.+.|.--|+ +..+..+...+..-. ..+|-.+-++|-.. |++++|...|.... .+|.
T Consensus 265 ~n~~nP~~l~~LAn~fyfK~d-y~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~-Gd~ekA~~yY~~s~k~~~d~~~ 342 (1018)
T KOG2002|consen 265 ENNENPVALNHLANHFYFKKD-YERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQ-GDFEKAFKYYMESLKADNDNFV 342 (1018)
T ss_pred hcCCCcHHHHHHHHHHhhccc-HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHccCCCCcc
Confidence 467788899999999998888 999988887776322 23466778888888 99999999998776 3333
Q ss_pred ehHHHHHHHHHhCCCHHHHHHHHhhCCc---CCHhHHHHHHHHHHHcC----ChHHHHHHHhhCCCC---CcccHHHHHH
Q 009066 71 ASWNTMISGFVQKKNMAKARDLFLAMPE---KNSVSWSAMISGYIECG----QLDKAVELFKVAPVK---SVVAWTAMIS 140 (545)
Q Consensus 71 ~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g----~~~~A~~~f~~~~~~---~~~~~~~li~ 140 (545)
..+--+...|.+.|+++.+...|+.+.+ .+..+...|...|+..+ ..+.|..+..+...+ |...|-.+..
T Consensus 343 l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laq 422 (1018)
T KOG2002|consen 343 LPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQ 422 (1018)
T ss_pred ccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 3455677889999999999999998873 34567777777777765 456666666555433 3334444433
Q ss_pred HhcchhhhccCChHHHHHHHHHHH----hCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhC---CCCCCcc-----
Q 009066 141 GYMKFGYVENSWAEDGLKLLRMMI----GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKS---PLCKDTT----- 208 (545)
Q Consensus 141 ~~~~~g~~~~g~~~~A~~~~~~m~----~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~---g~~~~~~----- 208 (545)
.+ ..+++..++..|.... ..+-++.....|.+...+...|+++.|...|...... -..+|..
T Consensus 423 l~------e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~l 496 (1018)
T KOG2002|consen 423 LL------EQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNL 496 (1018)
T ss_pred HH------HhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchh
Confidence 33 2233333344443322 2233344445555555555555555555555554433 1111111
Q ss_pred --cHH--------------------------HHHHHHHhc-------CCHHHHHHHHHhccC---CChhhHHHHHHHHHH
Q 009066 209 --ALT--------------------------PLISMYCKC-------GDLEDACKLFLEIQR---KDVVTWNAMISGYAQ 250 (545)
Q Consensus 209 --~~~--------------------------~li~~y~~~-------g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~ 250 (545)
-|| ..|++|.+. +...+|...+..... .++..|+-+...|..
T Consensus 497 t~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~ 576 (1018)
T KOG2002|consen 497 TLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLK 576 (1018)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHh
Confidence 111 123333333 344555555555442 456667766667777
Q ss_pred cCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHc------------cCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHH
Q 009066 251 HGKGEKALRLFDKMKDE-GMKPDSITFVALLLACNH------------AGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVD 317 (545)
Q Consensus 251 ~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~a~~~------------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 317 (545)
...+..|.+-|+..... ...+|..+...|.+.|.. .+..+.|+++|.++.+ ..+.+...-+.+.-
T Consensus 577 k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~yAANGIgi 654 (1018)
T KOG2002|consen 577 KSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR--NDPKNMYAANGIGI 654 (1018)
T ss_pred hhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh--cCcchhhhccchhh
Confidence 77777777766665542 233566666666665542 2456788888888876 44667788888999
Q ss_pred HHhHcCCHHHHHHHHHhC--CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcC-CCCCCchhHHHHHHHHHHcCCchH
Q 009066 318 LLGRAGKLVEAVDLIKKM--PFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNL-NPANAAGCYVQLANIYAAMKKWDD 394 (545)
Q Consensus 318 ~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~~l~~~~~~~g~~~~ 394 (545)
.++..|++.+|..+|.+. ....+..+|-.+...|...|++..|++.|+...+. .+.+.......|++++...|++.+
T Consensus 655 VLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~e 734 (1018)
T KOG2002|consen 655 VLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQE 734 (1018)
T ss_pred hhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHH
Confidence 999999999999999988 22235568999999999999999999999988663 455444488899999999999999
Q ss_pred HHHHHHHhhhC
Q 009066 395 VARIRLSMKEN 405 (545)
Q Consensus 395 a~~~~~~m~~~ 405 (545)
+.+........
T Consensus 735 ak~~ll~a~~~ 745 (1018)
T KOG2002|consen 735 AKEALLKARHL 745 (1018)
T ss_pred HHHHHHHHHHh
Confidence 99988776654
No 28
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.60 E-value=3.3e-15 Score=142.20 Aligned_cols=251 Identities=18% Similarity=0.169 Sum_probs=112.2
Q ss_pred hccCChHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHhccCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHH
Q 009066 148 VENSWAEDGLKLLRMMIGLGIRPNASSL-SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 226 (545)
Q Consensus 148 ~~~g~~~~A~~~~~~m~~~~~~pd~~t~-~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A 226 (545)
.+.|++++|++++++......+|+...| ..+...+...++.+.|.+.++.+.+.+. .+...+..++.. ...+++++|
T Consensus 19 ~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~-~~~~~~~~l~~l-~~~~~~~~A 96 (280)
T PF13429_consen 19 YQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK-ANPQDYERLIQL-LQDGDPEEA 96 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc-ccccccccc
Confidence 7788888888888665544323444444 3444455678888899999988887763 356667777777 688999999
Q ss_pred HHHHHhccC--CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHccCcHHHHHHHHHHhHHhc
Q 009066 227 CKLFLEIQR--KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEG-MKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDY 303 (545)
Q Consensus 227 ~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 303 (545)
.++++..-+ ++...+..++..+.+.++++++.++++++.... .+++...|..+...+.+.|+.++|.+.+++..+.
T Consensus 97 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~- 175 (280)
T PF13429_consen 97 LKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL- 175 (280)
T ss_dssp ---------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-
T ss_pred ccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-
Confidence 998877643 566778888899999999999999999987543 3456667778888899999999999999999874
Q ss_pred CCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhC--CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHH
Q 009066 304 GIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM--PFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQ 381 (545)
Q Consensus 304 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~ 381 (545)
.+.+......++..+...|+.+++.++++.. ....|...|..+..++...|+.++|...+++..+.+|+++. ....
T Consensus 176 -~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~-~~~~ 253 (280)
T PF13429_consen 176 -DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPL-WLLA 253 (280)
T ss_dssp --TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HH-HHHH
T ss_pred -CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccc-cccc
Confidence 2445788889999999999999988877766 12356678899999999999999999999999999999998 9999
Q ss_pred HHHHHHHcCCchHHHHHHHHhh
Q 009066 382 LANIYAAMKKWDDVARIRLSMK 403 (545)
Q Consensus 382 l~~~~~~~g~~~~a~~~~~~m~ 403 (545)
++.++...|+.++|.+++++..
T Consensus 254 ~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 254 YADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHT----------------
T ss_pred cccccccccccccccccccccc
Confidence 9999999999999999987653
No 29
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.58 E-value=4.3e-12 Score=128.67 Aligned_cols=327 Identities=13% Similarity=0.160 Sum_probs=231.5
Q ss_pred HHhCCCHHHHHHHHhhCCc---CCHhHHHHHHHHHHHcCChHHHHHHHhh---CCCCCcccHHHHHHHhcchhhhccCCh
Q 009066 80 FVQKKNMAKARDLFLAMPE---KNSVSWSAMISGYIECGQLDKAVELFKV---APVKSVVAWTAMISGYMKFGYVENSWA 153 (545)
Q Consensus 80 ~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~---~~~~~~~~~~~li~~~~~~g~~~~g~~ 153 (545)
....|++++|..++.+++. .+...|.+|...|-..|+.+++...+-. +...|...|-.+-.-. .+.|.+
T Consensus 149 lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls-----~~~~~i 223 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLS-----EQLGNI 223 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHH-----HhcccH
Confidence 3344888888888887774 3466788888888888888888766532 3344666777777777 778888
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhCCCCCCcccHH----HHHHHHHhcCCHHHHHHH
Q 009066 154 EDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALT----PLISMYCKCGDLEDACKL 229 (545)
Q Consensus 154 ~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~----~li~~y~~~g~~~~A~~~ 229 (545)
++|.-.|.+.++.. +++...+---...|-+.|+...|...|.++.....+.|..-.. ..+..|...++-+.|.+.
T Consensus 224 ~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~ 302 (895)
T KOG2076|consen 224 NQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKA 302 (895)
T ss_pred HHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 88888888887764 4455555555667778888888888888887765433332222 245556667777888888
Q ss_pred HHhccC--C---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC---------------------------CHHHHH
Q 009066 230 FLEIQR--K---DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKP---------------------------DSITFV 277 (545)
Q Consensus 230 f~~~~~--~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---------------------------~~~t~~ 277 (545)
++.... . +...++.++..|.+...++.|......+......+ +...+.
T Consensus 303 le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~r 382 (895)
T KOG2076|consen 303 LEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIR 382 (895)
T ss_pred HHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHh
Confidence 877664 2 34567788888888888888888887776621222 222211
Q ss_pred HHHHHHHccCcHHHHHHHHHHhHHhcC--CCCCHHHHHHHHHHHhHcCCHHHHHHHHHhC---CCCCCHhHHHHHHHHHH
Q 009066 278 ALLLACNHAGLVDLGIQYFDSMVNDYG--IAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM---PFKPQPAIFGTLLSACR 352 (545)
Q Consensus 278 ~ll~a~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~li~~~~ 352 (545)
+.-+..+....+....+...+.+. . ..-++..|.-+.++|...|++.+|+.+|..+ +...+...|--+...|.
T Consensus 383 -l~icL~~L~~~e~~e~ll~~l~~~-n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~ 460 (895)
T KOG2076|consen 383 -LMICLVHLKERELLEALLHFLVED-NVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYM 460 (895)
T ss_pred -HhhhhhcccccchHHHHHHHHHHh-cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHH
Confidence 112233344434443344334332 4 4445788999999999999999999999988 22235679999999999
Q ss_pred hcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchHHHHHHHHhhhCCCccCCceeE
Q 009066 353 VHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSW 415 (545)
Q Consensus 353 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~ 415 (545)
..|..++|.+.|++++.+.|++.. +-..|..+|...|+.|+|.+++..|..-+-...+++.|
T Consensus 461 ~l~e~e~A~e~y~kvl~~~p~~~D-~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~ 522 (895)
T KOG2076|consen 461 ELGEYEEAIEFYEKVLILAPDNLD-ARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAW 522 (895)
T ss_pred HHhhHHHHHHHHHHHHhcCCCchh-hhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccc
Confidence 999999999999999999999988 99999999999999999999999887333222344444
No 30
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.56 E-value=1.4e-11 Score=116.16 Aligned_cols=384 Identities=13% Similarity=0.146 Sum_probs=294.5
Q ss_pred CCCChHHHHHHHccCCC---CChhhHHHHHHHHHcCCCCHHHHHHHHhcCC---CCCeehHHHHHHHHHhCCCHHHHHHH
Q 009066 19 QRGKLKDAQELFDKIPQ---PDVVSYNIMLSCILLNSDDVVAAFDFFQRLP---IKDTASWNTMISGFVQKKNMAKARDL 92 (545)
Q Consensus 19 ~g~~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~~g~~~~A~~~~~~m~---~~d~~~~~~li~~~~~~g~~~~a~~~ 92 (545)
++. +..|+.+|+.... ++...|---+..=.++ ..+..|+.+|++.. ++-...|---+-.=-..|++..|.++
T Consensus 86 q~e-~~RARSv~ERALdvd~r~itLWlkYae~Emkn-k~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqi 163 (677)
T KOG1915|consen 86 QKE-IQRARSVFERALDVDYRNITLWLKYAEFEMKN-KQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQI 163 (677)
T ss_pred HHH-HHHHHHHHHHHHhcccccchHHHHHHHHHHhh-hhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHH
Confidence 345 7889999999874 6677788888888888 99999999999876 33224555556666678999999999
Q ss_pred HhhCC--cCCHhHHHHHHHHHHHcCChHHHHHHHhhCC--CCCcccHHHHHHHhcchhhhccCChHHHHHHHHHHHhCCC
Q 009066 93 FLAMP--EKNSVSWSAMISGYIECGQLDKAVELFKVAP--VKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGI 168 (545)
Q Consensus 93 ~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~g~~~~A~~~~~~m~~~~~ 168 (545)
|++.. +|+...|++.|++=.+-..++.|+.++++.. .|++.+|--...-- .+.|....|..+|....+.
T Consensus 164 ferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE-----~k~g~~~~aR~VyerAie~-- 236 (677)
T KOG1915|consen 164 FERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFE-----EKHGNVALARSVYERAIEF-- 236 (677)
T ss_pred HHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHH-----HhcCcHHHHHHHHHHHHHH--
Confidence 99877 6899999999999999999999999999754 78888888877777 7888999999999888753
Q ss_pred CCCHH----HHHHHHHHHhccCcHHHHHHHHHHHHhCCCCCC--cccHHHHHHHHHhcCCHHHHHHH--------HHhcc
Q 009066 169 RPNAS----SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKD--TTALTPLISMYCKCGDLEDACKL--------FLEIQ 234 (545)
Q Consensus 169 ~pd~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~y~~~g~~~~A~~~--------f~~~~ 234 (545)
-.|.. .|++....=.....++.|..+|+.++..= +.+ ...|..+...--+-|+....... ++.+.
T Consensus 237 ~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v 315 (677)
T KOG1915|consen 237 LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEV 315 (677)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHH
Confidence 12333 33343333346778899999999988763 222 44566666655566775554443 23333
Q ss_pred CC---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH-------HHHHHHHHH---HccCcHHHHHHHHHHhHH
Q 009066 235 RK---DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSI-------TFVALLLAC---NHAGLVDLGIQYFDSMVN 301 (545)
Q Consensus 235 ~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-------t~~~ll~a~---~~~g~~~~a~~~~~~~~~ 301 (545)
.. |-.+|--.+..--..|+.+...++|++.+.. ++|-.. .|.-+=-+| ....+++.++++++..++
T Consensus 316 ~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~ 394 (677)
T KOG1915|consen 316 SKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD 394 (677)
T ss_pred HhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 32 6678888888888889999999999999875 565321 121111122 356789999999998886
Q ss_pred hcCCCCCHHHHHHHHHHH----hHcCCHHHHHHHHHhC-CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCc
Q 009066 302 DYGIAAKPDHYTCMVDLL----GRAGKLVEAVDLIKKM-PFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAA 376 (545)
Q Consensus 302 ~~~~~~~~~~~~~li~~~----~~~g~~~~A~~~~~~m-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 376 (545)
-++....|+.-+--+| .++.++..|.+++... |.-|-..++...|..-.+.++++....++++.++-+|.+..
T Consensus 395 --lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~ 472 (677)
T KOG1915|consen 395 --LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCY 472 (677)
T ss_pred --hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhH
Confidence 5666667776655555 4788999999999876 77799999999999999999999999999999999999988
Q ss_pred hhHHHHHHHHHHcCCchHHHHHHHHhhhCCCccCCceeEE
Q 009066 377 GCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWI 416 (545)
Q Consensus 377 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~ 416 (545)
++...+..-...|+++.|..+|....+....-.|...|-
T Consensus 473 -~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwk 511 (677)
T KOG1915|consen 473 -AWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWK 511 (677)
T ss_pred -HHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHH
Confidence 999999999999999999999999988765555666663
No 31
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.53 E-value=1e-11 Score=123.71 Aligned_cols=274 Identities=11% Similarity=0.068 Sum_probs=176.7
Q ss_pred cCChHHHHHHHhhCCCCC---cccHHHHHHHhcchhhhccCChHHHHHHHHHHHhCCCCCCHHHHH--HHHHHHhccCcH
Q 009066 114 CGQLDKAVELFKVAPVKS---VVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLS--SVLLGCSHLSSL 188 (545)
Q Consensus 114 ~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~--~ll~~~~~~~~~ 188 (545)
.|+++.|++.+...+... ...|-...... .+.|+++.|.+.|.++.+. .|+..... .....+...|++
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA-----~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~ 169 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAA-----QQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNEN 169 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHH-----HHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCH
Confidence 577777777776654421 12222223333 5677778888888777653 45543322 224456677788
Q ss_pred HHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhccCCCh-----------hhHHHHHHHHHHcCChHHH
Q 009066 189 QLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDV-----------VTWNAMISGYAQHGKGEKA 257 (545)
Q Consensus 189 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~-----------~~~~~li~~~~~~g~~~~A 257 (545)
+.|.+.++.+.+.. +.+..+...+...|.+.|++++|.+++..+.+... .+|..++.......+.+..
T Consensus 170 ~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l 248 (398)
T PRK10747 170 HAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGL 248 (398)
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 88888887777765 45566777777888888888888877777764311 1233333333334444555
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhC-C
Q 009066 258 LRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-P 336 (545)
Q Consensus 258 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~ 336 (545)
.++++.+-+. .+.+......+..++...|+.++|.+.+++..+. +|+.... ++......++.+++.+..++. .
T Consensus 249 ~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk 322 (398)
T PRK10747 249 KRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---QYDERLV--LLIPRLKTNNPEQLEKVLRQQIK 322 (398)
T ss_pred HHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHHH--HHHhhccCCChHHHHHHHHHHHh
Confidence 5555554322 2345566667777888888888888888777653 4454322 222223457888888877766 3
Q ss_pred CCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchHHHHHHHHhh
Q 009066 337 FKP-QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMK 403 (545)
Q Consensus 337 ~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 403 (545)
..| |......+...|...+++++|...|+++.+..|++. .+..|..++.+.|+.++|.+++++-.
T Consensus 323 ~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~--~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 323 QHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAY--DYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345 445567777888888888888888888888888875 67788888888888888888887654
No 32
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.52 E-value=6.1e-11 Score=110.56 Aligned_cols=391 Identities=16% Similarity=0.153 Sum_probs=196.3
Q ss_pred CccHHHHHHHHHHhCCCChHHHHHHHccCCCCChh-h---HHHHH--HHHHcCCCCHHHHHHHHhcCC------------
Q 009066 5 TTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVV-S---YNIML--SCILLNSDDVVAAFDFFQRLP------------ 66 (545)
Q Consensus 5 ~~~~~~~li~~~~~~g~~~~~A~~~f~~~~~~~~~-~---~~~li--~~~~~~~g~~~~A~~~~~~m~------------ 66 (545)
.+.+-|.|+.+.+. |. +.++.-+++.|.+.++. + --.++ -.|..+..-+-.-++.|-.|.
T Consensus 115 ~V~~E~nL~kmIS~-~E-vKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~ 192 (625)
T KOG4422|consen 115 QVETENNLLKMISS-RE-VKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKS 192 (625)
T ss_pred hhcchhHHHHHHhh-cc-cchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccccc
Confidence 45677888888776 56 89999999999853322 1 11111 123333111111222333333
Q ss_pred -----------CCCeehHHHHHHHHHhCCCHHHHHHHHhhCCc----CCHhHHHHHHHHHHHcCChHHHHHHHhhCC---
Q 009066 67 -----------IKDTASWNTMISGFVQKKNMAKARDLFLAMPE----KNSVSWSAMISGYIECGQLDKAVELFKVAP--- 128 (545)
Q Consensus 67 -----------~~d~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~f~~~~--- 128 (545)
++...|+..||.+.++--..+.|.+++++... -+..++|.+|.+-+-.-. .++..+|.
T Consensus 193 G~vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqk 268 (625)
T KOG4422|consen 193 GAVADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQK 268 (625)
T ss_pred ccHHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhh
Confidence 33445555555555555555555555555442 234444554443322222 22333332
Q ss_pred -CCCcccHHHHHHHhcchhhhccCChH----HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHH-HHHHHHHHHh--
Q 009066 129 -VKSVVAWTAMISGYMKFGYVENSWAE----DGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQL-GKQVHQLVFK-- 200 (545)
Q Consensus 129 -~~~~~~~~~li~~~~~~g~~~~g~~~----~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~-a~~~~~~~~~-- 200 (545)
.||..|+|+++++. .+.|+++ .|++++.+|++-|+.|.-.+|..+|..+.+.++..+ +..+...+..
T Consensus 269 m~Pnl~TfNalL~c~-----akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~l 343 (625)
T KOG4422|consen 269 MTPNLFTFNALLSCA-----AKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSL 343 (625)
T ss_pred cCCchHhHHHHHHHH-----HHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhh
Confidence 45555555555555 4444433 234455555555555555555555555555444422 2222222222
Q ss_pred --CCCCC----CcccHHHHHHHHHhcCCHHHHHHHHHhccCC-----------ChhhHHHHHHHHHHcCChHHHHHHHHH
Q 009066 201 --SPLCK----DTTALTPLISMYCKCGDLEDACKLFLEIQRK-----------DVVTWNAMISGYAQHGKGEKALRLFDK 263 (545)
Q Consensus 201 --~g~~~----~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~-----------~~~~~~~li~~~~~~g~~~~A~~~~~~ 263 (545)
..+.| |...+..-++.+....+.+-|.++-.-.... ...-|..+....++....+.-+..|+.
T Consensus 344 tGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~ 423 (625)
T KOG4422|consen 344 TGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYED 423 (625)
T ss_pred ccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111 2223344444555555555555554433321 122344555566666666677777777
Q ss_pred HHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcC-C--------HHH-----HH
Q 009066 264 MKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAG-K--------LVE-----AV 329 (545)
Q Consensus 264 m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~--------~~~-----A~ 329 (545)
|.-.-+-|+..+...+++|....|.++-..+++..++. +|.......-.-+...+++.. . +.. |.
T Consensus 424 lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~-~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aa 502 (625)
T KOG4422|consen 424 LVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKE-YGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAA 502 (625)
T ss_pred hccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHH-hhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHH
Confidence 76666667777777777777777777777777766654 343333333333333333332 0 110 11
Q ss_pred HHHH-------hC-CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCC---CCCCc-hhHHHHHHHHHHcCCchHHHH
Q 009066 330 DLIK-------KM-PFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLN---PANAA-GCYVQLANIYAAMKKWDDVAR 397 (545)
Q Consensus 330 ~~~~-------~m-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---p~~~~-~~~~~l~~~~~~~g~~~~a~~ 397 (545)
.+++ ++ ...-.....+...-.+.+.|..++|.+++..+...+ |..+. .+...|.+.-........|..
T Consensus 503 d~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~ 582 (625)
T KOG4422|consen 503 DIKEAYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIE 582 (625)
T ss_pred HHHHHHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHH
Confidence 1111 11 112233445556666677788888887777765432 33331 122244444555566777777
Q ss_pred HHHHhhhCCC
Q 009066 398 IRLSMKENNV 407 (545)
Q Consensus 398 ~~~~m~~~~~ 407 (545)
+++.|...+.
T Consensus 583 ~lQ~a~~~n~ 592 (625)
T KOG4422|consen 583 VLQLASAFNL 592 (625)
T ss_pred HHHHHHHcCc
Confidence 7777765544
No 33
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.52 E-value=4.3e-11 Score=122.34 Aligned_cols=355 Identities=12% Similarity=0.088 Sum_probs=205.5
Q ss_pred hHHHHHHHHHcCCCCHHHHHHHHhcCCCC------CeehHHHHHHHHHhCCCHHHHHHHHhhCCc--CC--HhHHHHHHH
Q 009066 40 SYNIMLSCILLNSDDVVAAFDFFQRLPIK------DTASWNTMISGFVQKKNMAKARDLFLAMPE--KN--SVSWSAMIS 109 (545)
Q Consensus 40 ~~~~li~~~~~~~g~~~~A~~~~~~m~~~------d~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~--~~~~~~li~ 109 (545)
..+.|-+-|+.. |+++.++.+...+... -..+|-.+..+|-..|++++|...|.+... ++ +..+--|..
T Consensus 272 ~l~~LAn~fyfK-~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQ 350 (1018)
T KOG2002|consen 272 ALNHLANHFYFK-KDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQ 350 (1018)
T ss_pred HHHHHHHHHhhc-ccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhH
Confidence 333444444444 5666666555544411 123455556666666666666666655542 12 223344566
Q ss_pred HHHHcCChHHHHHHHhhCCCC---CcccHHHHHHHhcchhhhccC----ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 009066 110 GYIECGQLDKAVELFKVAPVK---SVVAWTAMISGYMKFGYVENS----WAEDGLKLLRMMIGLGIRPNASSLSSVLLGC 182 (545)
Q Consensus 110 ~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~g----~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~ 182 (545)
+|.+.|+++.|...|+.+... +..+...+...| +..+ ..++|..++.+..+.- +.|...|..+...+
T Consensus 351 m~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Ly-----a~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~ 424 (1018)
T KOG2002|consen 351 MYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLY-----AHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLL 424 (1018)
T ss_pred HHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHH-----HhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHH
Confidence 666666666666666655422 223333444444 3322 2344555555444332 33444555444444
Q ss_pred hccCcHHHHHHHHHHH----HhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhccCC-------Chh------hHHHHH
Q 009066 183 SHLSSLQLGKQVHQLV----FKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK-------DVV------TWNAMI 245 (545)
Q Consensus 183 ~~~~~~~~a~~~~~~~----~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~-------~~~------~~~~li 245 (545)
.. +++.....++..+ ...+-.+.+.+.|.+...+...|++++|...|++.... |.. +--.+.
T Consensus 425 e~-~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNla 503 (1018)
T KOG2002|consen 425 EQ-TDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLA 503 (1018)
T ss_pred Hh-cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHH
Confidence 33 2332234444333 23444456667777777777777777777777765431 221 111233
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCC
Q 009066 246 SGYAQHGKGEKALRLFDKMKDEGMKPDSI-TFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGK 324 (545)
Q Consensus 246 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 324 (545)
..+-..++.+.|.+.|....+. .|+-+ .|.-++......+...+|...+..... ....++..++.+...+.+...
T Consensus 504 rl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~--~d~~np~arsl~G~~~l~k~~ 579 (1018)
T KOG2002|consen 504 RLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALN--IDSSNPNARSLLGNLHLKKSE 579 (1018)
T ss_pred HHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHh--cccCCcHHHHHHHHHHHhhhh
Confidence 4444556677777777777663 34433 233333233344667777777777765 455666666677777777777
Q ss_pred HHHHHHHH----HhCCCCCCHhHHHHHHHHHH------------hcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHH
Q 009066 325 LVEAVDLI----KKMPFKPQPAIFGTLLSACR------------VHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAA 388 (545)
Q Consensus 325 ~~~A~~~~----~~m~~~p~~~~~~~li~~~~------------~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~ 388 (545)
+..|.+-| .+....+|..+.-+|.+.|. ..+..++|+++|.++++.+|.+.. +-+.++-+++.
T Consensus 580 ~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~y-AANGIgiVLA~ 658 (1018)
T KOG2002|consen 580 WKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMY-AANGIGIVLAE 658 (1018)
T ss_pred hcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhh-hccchhhhhhh
Confidence 76666633 33333467777777777554 234567899999999999999977 78889999999
Q ss_pred cCCchHHHHHHHHhhhCCC
Q 009066 389 MKKWDDVARIRLSMKENNV 407 (545)
Q Consensus 389 ~g~~~~a~~~~~~m~~~~~ 407 (545)
.|+|++|..+|.+.++...
T Consensus 659 kg~~~~A~dIFsqVrEa~~ 677 (1018)
T KOG2002|consen 659 KGRFSEARDIFSQVREATS 677 (1018)
T ss_pred ccCchHHHHHHHHHHHHHh
Confidence 9999999999999988655
No 34
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=1.1e-10 Score=110.06 Aligned_cols=316 Identities=14% Similarity=0.095 Sum_probs=206.2
Q ss_pred HHHhCCCHHHHHHHHhhCCcCCHhHHHHHHHHHHHcCChHHHHHHHhhCCCCCcccHH-HHHHHhcchhhhccCChHHHH
Q 009066 79 GFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWT-AMISGYMKFGYVENSWAEDGL 157 (545)
Q Consensus 79 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~-~li~~~~~~g~~~~g~~~~A~ 157 (545)
.+.+.|....|...|......-+..|.+.+....-.-+.+.+..+-...+..+...-. -+..++ -...+.++++
T Consensus 173 v~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~-----~el~q~~e~~ 247 (559)
T KOG1155|consen 173 VLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAY-----QELHQHEEAL 247 (559)
T ss_pred HHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHH-----HHHHHHHHHH
Confidence 3444555555555555554444444444444444444444444443333322110000 112223 3334556666
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhCCCC--CCcccHHHHHHHHHhcCCHHH-HHHHHHhcc
Q 009066 158 KLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLC--KDTTALTPLISMYCKCGDLED-ACKLFLEIQ 234 (545)
Q Consensus 158 ~~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~--~~~~~~~~li~~y~~~g~~~~-A~~~f~~~~ 234 (545)
+-.......|.+-+...-+....+.-...++++|+.+|+.+.+...- .|..+|+.++-.-..+.++.- |..++ .+.
T Consensus 248 ~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~-~id 326 (559)
T KOG1155|consen 248 QKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVS-NID 326 (559)
T ss_pred HHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHH-Hhc
Confidence 66666666664444444344444445666777777777777776311 134445444422222222221 22222 222
Q ss_pred CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHH
Q 009066 235 RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTC 314 (545)
Q Consensus 235 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 314 (545)
+--+.|...+.+-|.-.++.++|+..|++.++.+.. ....|+.+..-|....+...|.+.++..++ --+.|-..|-.
T Consensus 327 KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd--i~p~DyRAWYG 403 (559)
T KOG1155|consen 327 KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVD--INPRDYRAWYG 403 (559)
T ss_pred cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHh--cCchhHHHHhh
Confidence 223455666677788888999999999999885422 345666667888999999999999999886 34667889999
Q ss_pred HHHHHhHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCc
Q 009066 315 MVDLLGRAGKLVEAVDLIKKM-PFKP-QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKW 392 (545)
Q Consensus 315 li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~ 392 (545)
|.++|.-.+...-|+-+|++. ..+| |...|.+|...|.+.++.++|++.|..++..+-.+.. ++..|++.|.+.++.
T Consensus 404 LGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~-~l~~LakLye~l~d~ 482 (559)
T KOG1155|consen 404 LGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGS-ALVRLAKLYEELKDL 482 (559)
T ss_pred hhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchH-HHHHHHHHHHHHHhH
Confidence 999999999999999999988 5666 7789999999999999999999999999988766656 899999999999999
Q ss_pred hHHHHHHHHhhh
Q 009066 393 DDVARIRLSMKE 404 (545)
Q Consensus 393 ~~a~~~~~~m~~ 404 (545)
++|...+++-.+
T Consensus 483 ~eAa~~yek~v~ 494 (559)
T KOG1155|consen 483 NEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHHH
Confidence 999999987655
No 35
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.51 E-value=2.9e-12 Score=125.98 Aligned_cols=196 Identities=15% Similarity=0.074 Sum_probs=126.3
Q ss_pred CCCcccHHHHHHHHHhcCCHHHHHHHHHhccCC---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-HHHHHH
Q 009066 204 CKDTTALTPLISMYCKCGDLEDACKLFLEIQRK---DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDS-ITFVAL 279 (545)
Q Consensus 204 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~l 279 (545)
+..+.+|-++.+.|.-.++.+.|++.|++..+- ...+|+.+..-+.....++.|...|+..+. +.|.. ..|..+
T Consensus 418 ~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~rhYnAwYGl 495 (638)
T KOG1126|consen 418 PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDPRHYNAWYGL 495 (638)
T ss_pred CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCchhhHHHHhh
Confidence 344566666677777677777777777666543 345566565566666667777777766653 22222 244455
Q ss_pred HHHHHccCcHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHhHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCC
Q 009066 280 LLACNHAGLVDLGIQYFDSMVNDYGIAA-KPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKP-QPAIFGTLLSACRVHKR 356 (545)
Q Consensus 280 l~a~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~ 356 (545)
...|.+.++++.|.-.|+...+ +.| +.....++...+.+.|+.|+|+.+|++. ...| |+..---.+..+...++
T Consensus 496 G~vy~Kqek~e~Ae~~fqkA~~---INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~ 572 (638)
T KOG1126|consen 496 GTVYLKQEKLEFAEFHFQKAVE---INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGR 572 (638)
T ss_pred hhheeccchhhHHHHHHHhhhc---CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcc
Confidence 5666777777777777766653 233 3445556666777777777777777766 2222 44444444555666777
Q ss_pred HHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchHHHHHHHHhhhC
Q 009066 357 LDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKEN 405 (545)
Q Consensus 357 ~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 405 (545)
+++|+..++++.++-|++.. .|..++.+|.+.|+.+.|+.-|.-+.+.
T Consensus 573 ~~eal~~LEeLk~~vP~es~-v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 573 YVEALQELEELKELVPQESS-VFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred hHHHHHHHHHHHHhCcchHH-HHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 78888888888888887777 7888888888888888887777666553
No 36
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.49 E-value=7.4e-11 Score=117.65 Aligned_cols=277 Identities=10% Similarity=0.028 Sum_probs=203.7
Q ss_pred CCCHHHHHHHHhhCCcC--CHhHHHHH-HHHHHHcCChHHHHHHHhhCCCCCccc--HH--HHHHHhcchhhhccCChHH
Q 009066 83 KKNMAKARDLFLAMPEK--NSVSWSAM-ISGYIECGQLDKAVELFKVAPVKSVVA--WT--AMISGYMKFGYVENSWAED 155 (545)
Q Consensus 83 ~g~~~~a~~~~~~~~~~--~~~~~~~l-i~~~~~~g~~~~A~~~f~~~~~~~~~~--~~--~li~~~~~~g~~~~g~~~~ 155 (545)
.|+++.|.+.+....+. ++..+..+ .....+.|+++.|.+.|.++.+.+... .- .....+ ...|++++
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~-----l~~g~~~~ 171 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQ-----LARNENHA 171 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHH-----HHCCCHHH
Confidence 58888888777765432 23333333 334477888888888888776433221 21 224455 77888888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhCCCCCCcc-------cHHHHHHHHHhcCCHHHHHH
Q 009066 156 GLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTT-------ALTPLISMYCKCGDLEDACK 228 (545)
Q Consensus 156 A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~-------~~~~li~~y~~~g~~~~A~~ 228 (545)
|+..++++.+.. +-+......+...+.+.|+++++.+++..+.+.+..++.. ++..++.......+.+...+
T Consensus 172 Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~ 250 (398)
T PRK10747 172 ARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKR 250 (398)
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 888888887764 3356677777788888888888888888888876443221 23333444445556677777
Q ss_pred HHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCC
Q 009066 229 LFLEIQR---KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGI 305 (545)
Q Consensus 229 ~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 305 (545)
+++.+++ .++.....+...+...|+.++|..++++..+. .||.... ++.+....++.+++.+..+...+. .
T Consensus 251 ~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~--~ 324 (398)
T PRK10747 251 WWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQ--H 324 (398)
T ss_pred HHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhh--C
Confidence 7777764 47788899999999999999999999999874 4454221 233444569999999999998874 4
Q ss_pred CCCHHHHHHHHHHHhHcCCHHHHHHHHHhC-CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCC
Q 009066 306 AAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLN 371 (545)
Q Consensus 306 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 371 (545)
+-|+..+.++..++.+.|++++|.+.|+.. ...|+...+..|...+...|+.++|..++++.+.+-
T Consensus 325 P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 325 GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 666788899999999999999999999988 667999999999999999999999999999887643
No 37
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.49 E-value=1e-11 Score=116.26 Aligned_cols=253 Identities=13% Similarity=0.099 Sum_probs=181.1
Q ss_pred hhccCChHHHHHHHHHHHhCCCCCCHHHHH--HHHHHHhccCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHH
Q 009066 147 YVENSWAEDGLKLLRMMIGLGIRPNASSLS--SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 224 (545)
Q Consensus 147 ~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~--~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~ 224 (545)
+.++|+++.|+++++-..+..-+.-+..-+ +++.....-.++..|.++-+..+... .-+......-.+.-...|+++
T Consensus 429 ~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~d 507 (840)
T KOG2003|consen 429 LLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLD 507 (840)
T ss_pred HHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHH
Confidence 477888888888888776543222222222 22333333446677777666665432 112222222223334579999
Q ss_pred HHHHHHHhccCCChhhHHHHH---HHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHhHH
Q 009066 225 DACKLFLEIQRKDVVTWNAMI---SGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN 301 (545)
Q Consensus 225 ~A~~~f~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 301 (545)
+|.+.|.+....|...-.+|. -.+-..|+.++|++.|-++... +..+...+..+.+.|....+..+|++++.+...
T Consensus 508 ka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~s 586 (840)
T KOG2003|consen 508 KAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANS 586 (840)
T ss_pred HHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc
Confidence 999999999988766544443 3466789999999999988653 344666777888899999999999999977654
Q ss_pred hcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhC-C-CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhH
Q 009066 302 DYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-P-FKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCY 379 (545)
Q Consensus 302 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 379 (545)
-++.|+...+-|.+.|-+.|+-..|.+.+-.- . +..+..+..-|..-|....-+++|+..|+++.-+.|+.+ -|
T Consensus 587 --lip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~--kw 662 (840)
T KOG2003|consen 587 --LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQS--KW 662 (840)
T ss_pred --cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHH--HH
Confidence 56778999999999999999999999875443 2 224666777777778888888999999999999999987 45
Q ss_pred HHH-HHHHHHcCCchHHHHHHHHhhhC
Q 009066 380 VQL-ANIYAAMKKWDDVARIRLSMKEN 405 (545)
Q Consensus 380 ~~l-~~~~~~~g~~~~a~~~~~~m~~~ 405 (545)
..+ +.++.+.|++..|..+++....+
T Consensus 663 qlmiasc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 663 QLMIASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 554 55668899999999999988653
No 38
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.48 E-value=1.1e-10 Score=117.07 Aligned_cols=277 Identities=10% Similarity=0.019 Sum_probs=148.8
Q ss_pred hCCCHHHHHHHHhhCCc--CC-HhHHHHHHHHHHHcCChHHHHHHHhhCCC--CCc--ccHHHHHHHhcchhhhccCChH
Q 009066 82 QKKNMAKARDLFLAMPE--KN-SVSWSAMISGYIECGQLDKAVELFKVAPV--KSV--VAWTAMISGYMKFGYVENSWAE 154 (545)
Q Consensus 82 ~~g~~~~a~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~~--~~~~~li~~~~~~g~~~~g~~~ 154 (545)
..|+++.|.+.+.+..+ |+ ...+-....++.+.|+.+.|.+.|.+..+ |+. ...-.....+ .+.|+++
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~-----l~~~~~~ 170 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRIL-----LAQNELH 170 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHH-----HHCCCHH
Confidence 46777777777666553 22 22233344556666777777777766422 222 1222234445 6677777
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHH---H----hcCCHHHHH
Q 009066 155 DGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMY---C----KCGDLEDAC 227 (545)
Q Consensus 155 ~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y---~----~~g~~~~A~ 227 (545)
.|++.++.+.+.. +-+...+..+...+...|+++.+.+.+..+.+.+..+.......-...+ . .....+...
T Consensus 171 ~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~ 249 (409)
T TIGR00540 171 AARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLL 249 (409)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 7777777777653 2244566666667777777777777777777765432222111111111 1 112223333
Q ss_pred HHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHH---HHHHHHHHccCcHHHHHHHHHHhHH
Q 009066 228 KLFLEIQR---KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITF---VALLLACNHAGLVDLGIQYFDSMVN 301 (545)
Q Consensus 228 ~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~---~~ll~a~~~~g~~~~a~~~~~~~~~ 301 (545)
+..+..++ .+...+..+...+...|+.++|.+++++..+. .||.... ..........++.+.+.+.++...+
T Consensus 250 ~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk 327 (409)
T TIGR00540 250 NWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAK 327 (409)
T ss_pred HHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHH
Confidence 44444443 36666777777777777777777777777664 2333211 1111112234555666666655554
Q ss_pred hcCCCCCH--HHHHHHHHHHhHcCCHHHHHHHHHh--C-CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 009066 302 DYGIAAKP--DHYTCMVDLLGRAGKLVEAVDLIKK--M-PFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLF 368 (545)
Q Consensus 302 ~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~--m-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 368 (545)
.. +-++ ....++...+.+.|++++|.+.|+. . ...|+...+..+...+.+.|+.++|.+++++.+
T Consensus 328 ~~--p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 328 NV--DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred hC--CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 32 2222 4444566666666666666666662 2 344565555566666666666666666665543
No 39
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.47 E-value=1.3e-10 Score=110.34 Aligned_cols=215 Identities=15% Similarity=0.134 Sum_probs=176.3
Q ss_pred HhccCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHH
Q 009066 182 CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR---KDVVTWNAMISGYAQHGKGEKAL 258 (545)
Q Consensus 182 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 258 (545)
+.-.|+.-.+.+-++.+++... .+...|--+..+|....+.++-.+.|+...+ .|..+|..-...+.-.+++++|.
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~-~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~ 414 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDP-AFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAI 414 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCc-ccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHH
Confidence 3456888899999999998763 3344477788899999999999999998864 46677887788888888999999
Q ss_pred HHHHHHHHcCCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhC-C
Q 009066 259 RLFDKMKDEGMKP-DSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-P 336 (545)
Q Consensus 259 ~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~ 336 (545)
.-|++.+.. .| +...|..+..+..+.+.++++...|++..+ .++..+++|+.....+...++++.|.+.|+.. .
T Consensus 415 aDF~Kai~L--~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~ 490 (606)
T KOG0547|consen 415 ADFQKAISL--DPENAYAYIQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE 490 (606)
T ss_pred HHHHHHhhc--ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh
Confidence 999999874 44 455677777777789999999999999987 56888999999999999999999999999876 3
Q ss_pred CCCC---------HhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchHHHHHHHHhh
Q 009066 337 FKPQ---------PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMK 403 (545)
Q Consensus 337 ~~p~---------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 403 (545)
++|+ +.+.-+++..-.+ +++..|+.+++++++++|.... +|..|+..-.+.|+.++|.++|++-.
T Consensus 491 LE~~~~~~~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~Dpkce~-A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 491 LEPREHLIIVNAAPLVHKALLVLQWK-EDINQAENLLRKAIELDPKCEQ-AYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred hccccccccccchhhhhhhHhhhchh-hhHHHHHHHHHHHHccCchHHH-HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3343 2233333333333 8999999999999999999888 99999999999999999999998653
No 40
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.45 E-value=7.7e-12 Score=123.11 Aligned_cols=246 Identities=16% Similarity=0.163 Sum_probs=192.7
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhCCC--CCCcccHHHHHHHHHhcCCHHH-H
Q 009066 150 NSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPL--CKDTTALTPLISMYCKCGDLED-A 226 (545)
Q Consensus 150 ~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~y~~~g~~~~-A 226 (545)
.-+..+|+..|...... +.-.......+..+|...+++++++++|+.+.+... -.+..+|.+.+--+-+.=.+.. |
T Consensus 332 ~y~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~La 410 (638)
T KOG1126|consen 332 QYNCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLA 410 (638)
T ss_pred HHHHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHH
Confidence 34568899999885443 344456777788899999999999999999987631 2245667666644432211111 2
Q ss_pred HHHHHhccCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCC
Q 009066 227 CKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKP-DSITFVALLLACNHAGLVDLGIQYFDSMVNDYGI 305 (545)
Q Consensus 227 ~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 305 (545)
..+.+ +....+.+|-++..+|.-+++.+.|++.|++..+ +.| ...+|+.+..-+.....+|.|...|+..+
T Consensus 411 q~Li~-~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al----- 482 (638)
T KOG1126|consen 411 QDLID-TDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL----- 482 (638)
T ss_pred HHHHh-hCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhh-----
Confidence 22222 2234678999999999999999999999999987 455 66788888788888899999999998765
Q ss_pred CCCHHHHHH---HHHHHhHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHH
Q 009066 306 AAKPDHYTC---MVDLLGRAGKLVEAVDLIKKM-PFKP-QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYV 380 (545)
Q Consensus 306 ~~~~~~~~~---li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 380 (545)
..++.+|++ |.-.|.+.++++.|+-.|++. .+.| +.+....+...+-+.|+.++|+.++++++.++|.++. .-+
T Consensus 483 ~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l-~~~ 561 (638)
T KOG1126|consen 483 GVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPL-CKY 561 (638)
T ss_pred cCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCch-hHH
Confidence 456666664 667899999999999999988 7777 4566677777889999999999999999999999998 888
Q ss_pred HHHHHHHHcCCchHHHHHHHHhhhC
Q 009066 381 QLANIYAAMKKWDDVARIRLSMKEN 405 (545)
Q Consensus 381 ~l~~~~~~~g~~~~a~~~~~~m~~~ 405 (545)
.-+.++...+++++|.+.++++++-
T Consensus 562 ~~~~il~~~~~~~eal~~LEeLk~~ 586 (638)
T KOG1126|consen 562 HRASILFSLGRYVEALQELEELKEL 586 (638)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHh
Confidence 8999999999999999999999874
No 41
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.45 E-value=4.1e-10 Score=105.14 Aligned_cols=330 Identities=15% Similarity=0.187 Sum_probs=232.6
Q ss_pred HHHHccCCCCChhhHHHHHHHHHcCCCCHHHHHHHHhcCC----CCCeehHHHHHHHHHhCCCHHHHHHHHhhCC----c
Q 009066 27 QELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP----IKDTASWNTMISGFVQKKNMAKARDLFLAMP----E 98 (545)
Q Consensus 27 ~~~f~~~~~~~~~~~~~li~~~~~~~g~~~~A~~~~~~m~----~~d~~~~~~li~~~~~~g~~~~a~~~~~~~~----~ 98 (545)
.-+|+..| +...++..||+++++- ...++|.+++.+-. +-+..+||.+|.+-.-. ...++..+|. .
T Consensus 197 dL~~E~~P-KT~et~s~mI~Gl~K~-~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~ 270 (625)
T KOG4422|consen 197 DLLFETLP-KTDETVSIMIAGLCKF-SSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMT 270 (625)
T ss_pred HHHHhhcC-CCchhHHHHHHHHHHH-HhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcC
Confidence 34555444 3456799999999999 89999999999887 34667888888664322 2356666665 6
Q ss_pred CCHhHHHHHHHHHHHcCChHHHHHHHh----hCC----CCCcccHHHHHHHhcchhhhccCChHH-HHHHHHHHHhC---
Q 009066 99 KNSVSWSAMISGYIECGQLDKAVELFK----VAP----VKSVVAWTAMISGYMKFGYVENSWAED-GLKLLRMMIGL--- 166 (545)
Q Consensus 99 ~~~~~~~~li~~~~~~g~~~~A~~~f~----~~~----~~~~~~~~~li~~~~~~g~~~~g~~~~-A~~~~~~m~~~--- 166 (545)
||..|+|+++.+.++.|.++.|++.+- +|. +|...+|..+|..+ .+.+++.+ |..+..+++..
T Consensus 271 Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f-----~re~dp~k~as~~i~dI~N~ltG 345 (625)
T KOG4422|consen 271 PNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNF-----KRESDPQKVASSWINDIQNSLTG 345 (625)
T ss_pred CchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHh-----cccCCchhhhHHHHHHHHHhhcc
Confidence 999999999999999999999886653 343 67889999999988 66666543 55555555432
Q ss_pred -CCC---C-CHHHHHHHHHHHhccCcHHHHHHHHHHHHhCC----CCCC---cccHHHHHHHHHhcCCHHHHHHHHHhcc
Q 009066 167 -GIR---P-NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSP----LCKD---TTALTPLISMYCKCGDLEDACKLFLEIQ 234 (545)
Q Consensus 167 -~~~---p-d~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g----~~~~---~~~~~~li~~y~~~g~~~~A~~~f~~~~ 234 (545)
.++ | |...|.+.++.|.+..+.+.|.+++....... +.|+ ...|..+....+.....+.-...|+.|.
T Consensus 346 K~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lV 425 (625)
T KOG4422|consen 346 KTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLV 425 (625)
T ss_pred CcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 223 3 56788999999999999999999998775431 2233 2345677888888899999999999987
Q ss_pred C----CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC-c---H-----H-----HHHHHH
Q 009066 235 R----KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG-L---V-----D-----LGIQYF 296 (545)
Q Consensus 235 ~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g-~---~-----~-----~a~~~~ 296 (545)
. |+..+...++.+.--.|+++-.-+++..+...|..-+......++...++.. . . . -|..++
T Consensus 426 P~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~ 505 (625)
T KOG4422|consen 426 PSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIK 505 (625)
T ss_pred cceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHH
Confidence 5 5666777778888888888888888888877765444444444444333322 0 0 0 011111
Q ss_pred -------HHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhC-------CCCCCHhHHHHHHHHHHhcCCHHHHHH
Q 009066 297 -------DSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-------PFKPQPAIFGTLLSACRVHKRLDLAEF 362 (545)
Q Consensus 297 -------~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~~~~~~~li~~~~~~g~~~~A~~ 362 (545)
.++. .........++..-.+.|.|+.++|.+++.-. +..|......-++......++...|..
T Consensus 506 e~~e~~~~R~r---~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~ 582 (625)
T KOG4422|consen 506 EAYESQPIRQR---AQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIE 582 (625)
T ss_pred HHHHhhHHHHH---hccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHH
Confidence 1122 33455667888999999999999999988655 334544445566677778888888888
Q ss_pred HHHHHhcC
Q 009066 363 AAMNLFNL 370 (545)
Q Consensus 363 ~~~~~~~~ 370 (545)
+++-+...
T Consensus 583 ~lQ~a~~~ 590 (625)
T KOG4422|consen 583 VLQLASAF 590 (625)
T ss_pred HHHHHHHc
Confidence 88777543
No 42
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.45 E-value=4.2e-13 Score=127.74 Aligned_cols=251 Identities=17% Similarity=0.223 Sum_probs=101.8
Q ss_pred HHHHHHHHcCChHHHHHHHhhC-C----CCCcccHHHHHHHhcchhhhccCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 009066 106 AMISGYIECGQLDKAVELFKVA-P----VKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLL 180 (545)
Q Consensus 106 ~li~~~~~~g~~~~A~~~f~~~-~----~~~~~~~~~li~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~ 180 (545)
.+..++.+.|++++|.+++++. . ..|...|..+.... ...++.++|++.++++...+.. +...+..++.
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La-----~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~ 86 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLA-----WSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQ 86 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccc-----cccccccccccccccccccccc-cccccccccc
Confidence 4566777778888888888432 1 22445555555555 6677888888888888765422 4445555555
Q ss_pred HHhccCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhcc-----CCChhhHHHHHHHHHHcCChH
Q 009066 181 GCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ-----RKDVVTWNAMISGYAQHGKGE 255 (545)
Q Consensus 181 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~-----~~~~~~~~~li~~~~~~g~~~ 255 (545)
. ...+++++|.++.....+.. ++...+..++..|.+.|+++++..+++.+. ..+...|..+...+.+.|+.+
T Consensus 87 l-~~~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~ 163 (280)
T PF13429_consen 87 L-LQDGDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPD 163 (280)
T ss_dssp ----------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHH
T ss_pred c-cccccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHH
Confidence 5 67788888888777665543 455666778888888888888888888754 246677888888888999999
Q ss_pred HHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHHh
Q 009066 256 KALRLFDKMKDEGMKPD-SITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKK 334 (545)
Q Consensus 256 ~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 334 (545)
+|+..+++..+. .|+ ......++..+...|+.+++.+++....+. .+.++..+..+..+|...|+.++|+..|++
T Consensus 164 ~A~~~~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~--~~~~~~~~~~la~~~~~lg~~~~Al~~~~~ 239 (280)
T PF13429_consen 164 KALRDYRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKA--APDDPDLWDALAAAYLQLGRYEEALEYLEK 239 (280)
T ss_dssp HHHHHHHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH--CcCHHHHHHHHHHHhccccccccccccccc
Confidence 999999998875 454 556777888888889999888888887764 256667788888999999999999999888
Q ss_pred C-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 009066 335 M-PFKP-QPAIFGTLLSACRVHKRLDLAEFAAMNLFN 369 (545)
Q Consensus 335 m-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 369 (545)
. ...| |+.....+..++...|+.++|..+.+++.+
T Consensus 240 ~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 240 ALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHSTT-HHHHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccccccccccccc
Confidence 7 3234 677778888889999999999888877654
No 43
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.45 E-value=7.4e-11 Score=118.29 Aligned_cols=251 Identities=9% Similarity=-0.069 Sum_probs=154.9
Q ss_pred hccCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHH
Q 009066 148 VENSWAEDGLKLLRMMIGLGIRPNA-SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDA 226 (545)
Q Consensus 148 ~~~g~~~~A~~~~~~m~~~~~~pd~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A 226 (545)
...|+++.|.+.+.+..+. .|+. ..+.....+....|+.+.+.+.+..+.+....+...+..+....+...|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 4577888888877776554 3443 333344555667788888888887776653222223344457777778888888
Q ss_pred HHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH---HccCcHHHHHHHHHHhH
Q 009066 227 CKLFLEIQR---KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC---NHAGLVDLGIQYFDSMV 300 (545)
Q Consensus 227 ~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~---~~~g~~~~a~~~~~~~~ 300 (545)
...++.+.+ .+...+..+...|.+.|++++|.+++..+.+.++.+.......-..+. ...+..+++.+.+..+.
T Consensus 173 l~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~ 252 (409)
T TIGR00540 173 RHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW 252 (409)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 888877764 255667777778888888888888888887765432222111111111 22222233333444443
Q ss_pred Hhc--CCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhC-CCCCCHhH---HHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC
Q 009066 301 NDY--GIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKPQPAI---FGTLLSACRVHKRLDLAEFAAMNLFNLNPAN 374 (545)
Q Consensus 301 ~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~---~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~ 374 (545)
+.. ..+.++..+..++..+...|+.++|.+++++. ...||... +..........++.+.+.+.+++..+..|++
T Consensus 253 ~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~ 332 (409)
T TIGR00540 253 KNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDK 332 (409)
T ss_pred HHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCC
Confidence 320 11236777777888888888888888887776 33354431 1112222233467777888888888888887
Q ss_pred C--chhHHHHHHHHHHcCCchHHHHHHHH
Q 009066 375 A--AGCYVQLANIYAAMKKWDDVARIRLS 401 (545)
Q Consensus 375 ~--~~~~~~l~~~~~~~g~~~~a~~~~~~ 401 (545)
+ . ....++.++.+.|+|++|.+.|+.
T Consensus 333 ~~~~-ll~sLg~l~~~~~~~~~A~~~le~ 360 (409)
T TIGR00540 333 PKCC-INRALGQLLMKHGEFIEAADAFKN 360 (409)
T ss_pred hhHH-HHHHHHHHHHHcccHHHHHHHHHH
Confidence 7 5 667788888888888888888874
No 44
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.43 E-value=8.3e-10 Score=108.30 Aligned_cols=362 Identities=12% Similarity=0.077 Sum_probs=266.0
Q ss_pred hHHHHHHHHHcCCCCHHHHHHHHhcCC---CCCeehHHHHHHHHHhCCCHHHHHHHHhhCCc---CCHhHHHHHHHHHHH
Q 009066 40 SYNIMLSCILLNSDDVVAAFDFFQRLP---IKDTASWNTMISGFVQKKNMAKARDLFLAMPE---KNSVSWSAMISGYIE 113 (545)
Q Consensus 40 ~~~~li~~~~~~~g~~~~A~~~~~~m~---~~d~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~ 113 (545)
+|+.--..|.+. +.++-|+.+|.... +.+...|......--..|..++-..+|++... .....|-....-+-.
T Consensus 518 tw~~da~~~~k~-~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~ 596 (913)
T KOG0495|consen 518 TWLDDAQSCEKR-PAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWK 596 (913)
T ss_pred HHhhhHHHHHhc-chHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHh
Confidence 344444444444 55666666665554 33455666666665566777777777776653 244556666667777
Q ss_pred cCChHHHHHHHhhCCC---CCcccHHHHHHHhcchhhhccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHH
Q 009066 114 CGQLDKAVELFKVAPV---KSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQL 190 (545)
Q Consensus 114 ~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~ 190 (545)
.|++..|+.++.+..+ .+...|-+-+..- ..+.++++|..+|.+.... .|+...|.--+..---+++.++
T Consensus 597 agdv~~ar~il~~af~~~pnseeiwlaavKle-----~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~ee 669 (913)
T KOG0495|consen 597 AGDVPAARVILDQAFEANPNSEEIWLAAVKLE-----FENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEE 669 (913)
T ss_pred cCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHh-----hccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHH
Confidence 8888888887776543 2446677777777 7888888888888887763 5666666655555566788888
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhccC--C-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 009066 191 GKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR--K-DVVTWNAMISGYAQHGKGEKALRLFDKMKDE 267 (545)
Q Consensus 191 a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 267 (545)
|.++++..++.- +.-...|-.+...+-+.++++.|.+.|..-.+ | .+..|-.+...=-+.|...+|..++++.+..
T Consensus 670 A~rllEe~lk~f-p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlk 748 (913)
T KOG0495|consen 670 ALRLLEEALKSF-PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLK 748 (913)
T ss_pred HHHHHHHHHHhC-CchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhc
Confidence 888888887762 44455677788888888888888888877654 2 4567887777777888888888888888776
Q ss_pred CCCCCHHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhCCCCCCHhHHHHH
Q 009066 268 GMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTL 347 (545)
Q Consensus 268 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l 347 (545)
+.+ |...|...+..=.+.|+.++|..+..+..+ ..+.+...|..-|.+..+.++-..+.+.+++.. -|+.+.-++
T Consensus 749 NPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQ--ecp~sg~LWaEaI~le~~~~rkTks~DALkkce--~dphVllai 823 (913)
T KOG0495|consen 749 NPK-NALLWLESIRMELRAGNKEQAELLMAKALQ--ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE--HDPHVLLAI 823 (913)
T ss_pred CCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCccchhHHHHHHhccCcccchHHHHHHHhcc--CCchhHHHH
Confidence 533 667788888888888888888888888777 446677788888888888888777777777753 566666777
Q ss_pred HHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchHHHHHHHHhhhCCCccCCceeEEEE
Q 009066 348 LSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEV 418 (545)
Q Consensus 348 i~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~ 418 (545)
...+-....++.|..-|++.++.+|++-. +|..+...+...|.-++-.+++++.... .|..|..|..+
T Consensus 824 a~lfw~e~k~~kar~Wf~Ravk~d~d~GD-~wa~fykfel~hG~eed~kev~~~c~~~--EP~hG~~W~av 891 (913)
T KOG0495|consen 824 AKLFWSEKKIEKAREWFERAVKKDPDNGD-AWAWFYKFELRHGTEEDQKEVLKKCETA--EPTHGELWQAV 891 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCCccch-HHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCCCcHHHHH
Confidence 77888889999999999999999999988 9999999999999999999998877654 34456677554
No 45
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=4.4e-09 Score=99.48 Aligned_cols=337 Identities=13% Similarity=0.089 Sum_probs=236.4
Q ss_pred CCHHHHHHHHhcCCCCCeehHHHHHHHHHhCCCHHHHHHHHhhCCcCC-HhHHHHHHHHHHHcCChHHHHHHHhhCCC--
Q 009066 53 DDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKN-SVSWSAMISGYIECGQLDKAVELFKVAPV-- 129 (545)
Q Consensus 53 g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~f~~~~~-- 129 (545)
|..+.|++.|......-+..|.+-+....-.-+.+.+..+-......+ ...---+..+|-...+.+++..-.+....
T Consensus 178 ~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~q~~e~~~k~e~l~~~g 257 (559)
T KOG1155|consen 178 GLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQELHQHEEALQKKERLSSVG 257 (559)
T ss_pred chHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 888999999988774444455554444444444444444333332211 11112344566666677777665544332
Q ss_pred -CCcccHHHHH-HHhcchhhhccCChHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhCCCCC
Q 009066 130 -KSVVAWTAMI-SGYMKFGYVENSWAEDGLKLLRMMIGLGI--RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCK 205 (545)
Q Consensus 130 -~~~~~~~~li-~~~~~~g~~~~g~~~~A~~~~~~m~~~~~--~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~ 205 (545)
++..-+-+.+ .+. -.+.++++|+.+|+++.+... --|-.+|+.++-.-.....+.---+....+- +-
T Consensus 258 f~~~~~i~~~~A~~~-----y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~id----Ky 328 (559)
T KOG1155|consen 258 FPNSMYIKTQIAAAS-----YNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNID----KY 328 (559)
T ss_pred CCccHHHHHHHHHHH-----hhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhc----cC
Confidence 2221111222 222 567899999999999998741 1266788888754333222211111111111 22
Q ss_pred CcccHHHHHHHHHhcCCHHHHHHHHHhccCC---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 009066 206 DTTALTPLISMYCKCGDLEDACKLFLEIQRK---DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA 282 (545)
Q Consensus 206 ~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 282 (545)
-+.+...+.+-|+-.++.++|...|++..+- -...|+.|..-|....+...|++-|+...+-. +-|-..|-.|.++
T Consensus 329 R~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQa 407 (559)
T KOG1155|consen 329 RPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQA 407 (559)
T ss_pred CccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHH
Confidence 3456677888999999999999999998763 45789999999999999999999999999853 3477899999999
Q ss_pred HHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhC--CCCCCHhHHHHHHHHHHhcCCHHHH
Q 009066 283 CNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM--PFKPQPAIFGTLLSACRVHKRLDLA 360 (545)
Q Consensus 283 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~li~~~~~~g~~~~A 360 (545)
|.-.+...-|+-+|++..+ --+.|...|.+|.+.|.+.+++++|++.|... .-..+...+..|...|-+.++.++|
T Consensus 408 Yeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eA 485 (559)
T KOG1155|consen 408 YEIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEA 485 (559)
T ss_pred HHHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHH
Confidence 9999999999999999875 34667899999999999999999999999987 2123557899999999999999999
Q ss_pred HHHHHHHhc-------CCCCCCchhHHHHHHHHHHcCCchHHHHHHHHh
Q 009066 361 EFAAMNLFN-------LNPANAAGCYVQLANIYAAMKKWDDVARIRLSM 402 (545)
Q Consensus 361 ~~~~~~~~~-------~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 402 (545)
...|++-++ .+|.... +...|+.-+.+.+++++|...-...
T Consensus 486 a~~yek~v~~~~~eg~~~~~t~k-a~~fLA~~f~k~~~~~~As~Ya~~~ 533 (559)
T KOG1155|consen 486 AQYYEKYVEVSELEGEIDDETIK-ARLFLAEYFKKMKDFDEASYYATLV 533 (559)
T ss_pred HHHHHHHHHHHHhhcccchHHHH-HHHHHHHHHHhhcchHHHHHHHHHH
Confidence 999998876 3444333 5667888899999999998765443
No 46
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.39 E-value=3.7e-10 Score=101.90 Aligned_cols=259 Identities=15% Similarity=0.171 Sum_probs=150.5
Q ss_pred CCHHHHHHHHhcCCCCCeehH---HHHHHHHHhCCCHHHHHHHHhhCCcC-C------HhHHHHHHHHHHHcCChHHHHH
Q 009066 53 DDVVAAFDFFQRLPIKDTASW---NTMISGFVQKKNMAKARDLFLAMPEK-N------SVSWSAMISGYIECGQLDKAVE 122 (545)
Q Consensus 53 g~~~~A~~~~~~m~~~d~~~~---~~li~~~~~~g~~~~a~~~~~~~~~~-~------~~~~~~li~~~~~~g~~~~A~~ 122 (545)
.++++|.++|-+|.+.|..|+ -+|.+.|.+.|..+.|+.+++.+.++ | ..+...|..-|...|-+|.|+.
T Consensus 49 ~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~ 128 (389)
T COG2956 49 NQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAED 128 (389)
T ss_pred cCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 588888888888885555444 45677788888888888888877643 2 2233455666777777777777
Q ss_pred HHhhCCCCCc---ccHHHHHHHhcchhhhccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 009066 123 LFKVAPVKSV---VAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVF 199 (545)
Q Consensus 123 ~f~~~~~~~~---~~~~~li~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 199 (545)
+|..+...+. .+...|+..| -...+|++|++.-+++.+.+-++..+- +...
T Consensus 129 ~f~~L~de~efa~~AlqqLl~IY-----Q~treW~KAId~A~~L~k~~~q~~~~e---IAqf------------------ 182 (389)
T COG2956 129 IFNQLVDEGEFAEGALQQLLNIY-----QATREWEKAIDVAERLVKLGGQTYRVE---IAQF------------------ 182 (389)
T ss_pred HHHHHhcchhhhHHHHHHHHHHH-----HHhhHHHHHHHHHHHHHHcCCccchhH---HHHH------------------
Confidence 7776655333 3444566666 666667777776666665543332211 1111
Q ss_pred hCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhccCC---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHH
Q 009066 200 KSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK---DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITF 276 (545)
Q Consensus 200 ~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 276 (545)
|.-|...+.-..+.+.|..++.+..+. .+..--.+...+...|++..|++.++...+.+..--..+.
T Consensus 183 ----------yCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl 252 (389)
T COG2956 183 ----------YCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVL 252 (389)
T ss_pred ----------HHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHH
Confidence 112333333345555566666555432 2223333445566677777777777777665444344455
Q ss_pred HHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHH-HHhCCCCCCHhHHHHHHHH
Q 009066 277 VALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDL-IKKMPFKPQPAIFGTLLSA 350 (545)
Q Consensus 277 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~-~~~m~~~p~~~~~~~li~~ 350 (545)
..|..+|.+.|+.+++...+..+.+. .+.+..-..|.+......-.++|... .+++..+|+...+..|+..
T Consensus 253 ~~L~~~Y~~lg~~~~~~~fL~~~~~~---~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~ 324 (389)
T COG2956 253 EMLYECYAQLGKPAEGLNFLRRAMET---NTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDY 324 (389)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHc---cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHh
Confidence 66667777777777777777666643 33444444444444433344444443 3444556777666666654
No 47
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.39 E-value=7.3e-10 Score=100.03 Aligned_cols=258 Identities=15% Similarity=0.184 Sum_probs=163.8
Q ss_pred CCChHHHHHHHccCCCCChhhHHH--HHHHHHcCCCCHHHHHHHHhcCC-CCCe------ehHHHHHHHHHhCCCHHHHH
Q 009066 20 RGKLKDAQELFDKIPQPDVVSYNI--MLSCILLNSDDVVAAFDFFQRLP-IKDT------ASWNTMISGFVQKKNMAKAR 90 (545)
Q Consensus 20 g~~~~~A~~~f~~~~~~~~~~~~~--li~~~~~~~g~~~~A~~~~~~m~-~~d~------~~~~~li~~~~~~g~~~~a~ 90 (545)
.+ .++|..+|-.|.+-|..|+.+ -+..+.+..|..++|+++-..+. .||. .+.-.|..-|...|-++.|.
T Consensus 49 ~Q-~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 49 NQ-PDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred cC-cchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 45 899999999999766555443 33444555599999999998877 5553 23445667788999999999
Q ss_pred HHHhhCCcCC---HhHHHHHHHHHHHcCChHHHHHHHhhCCCCCcccHHHHHHHh-cchh--hhccCChHHHHHHHHHHH
Q 009066 91 DLFLAMPEKN---SVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGY-MKFG--YVENSWAEDGLKLLRMMI 164 (545)
Q Consensus 91 ~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~-~~~g--~~~~g~~~~A~~~~~~m~ 164 (545)
.+|..+.+.. ......|+..|-+..++++|.++-+++..-+...++.-|.-| |... .....+.+.|..++.+..
T Consensus 128 ~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAl 207 (389)
T COG2956 128 DIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKAL 207 (389)
T ss_pred HHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 9999998643 446677999999999999999998877766666666655433 1111 133344444555554444
Q ss_pred hCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhccCCChh----h
Q 009066 165 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVV----T 240 (545)
Q Consensus 165 ~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~----~ 240 (545)
+. . +..+..--.+.+.+...|+++.|.+.++.+.+.|.. +
T Consensus 208 qa-----------------------------------~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~ev 251 (389)
T COG2956 208 QA-----------------------------------D-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEV 251 (389)
T ss_pred hh-----------------------------------C-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHH
Confidence 43 2 222333334556666667777777776666655432 4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHH
Q 009066 241 WNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLL 319 (545)
Q Consensus 241 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 319 (545)
...+..+|.+.|+.++.+..+.++.+....++. -..+-..-....-.+.|..++.+-.++ .|+...+..|++.-
T Consensus 252 l~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~--~l~l~~lie~~~G~~~Aq~~l~~Ql~r---~Pt~~gf~rl~~~~ 325 (389)
T COG2956 252 LEMLYECYAQLGKPAEGLNFLRRAMETNTGADA--ELMLADLIELQEGIDAAQAYLTRQLRR---KPTMRGFHRLMDYH 325 (389)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHccCCccH--HHHHHHHHHHhhChHHHHHHHHHHHhh---CCcHHHHHHHHHhh
Confidence 556667777777777777777777664333322 222222223333445555555444443 67777777777754
No 48
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.38 E-value=6.6e-09 Score=102.16 Aligned_cols=271 Identities=10% Similarity=0.027 Sum_probs=212.0
Q ss_pred ccHHHHHHHhcchhhhccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhCCCCCCcccHHH
Q 009066 133 VAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTP 212 (545)
Q Consensus 133 ~~~~~li~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 212 (545)
.+|+.-...| ...+..+-|..+|...++. .+-+...|......=-..|..+.-..+++.++..- +.....|-.
T Consensus 517 ~tw~~da~~~-----~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM 589 (913)
T KOG0495|consen 517 STWLDDAQSC-----EKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLM 589 (913)
T ss_pred hHHhhhHHHH-----HhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHH
Confidence 4566666666 6677777778888777764 23355566666666667788888888888888764 344556666
Q ss_pred HHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcH
Q 009066 213 LISMYCKCGDLEDACKLFLEIQR---KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLV 289 (545)
Q Consensus 213 li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 289 (545)
...-+.+.|++..|..++...-+ .+...|-+-+..-..+.+++.|..+|.+... ..|+...|.--+..---.++.
T Consensus 590 ~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~ 667 (913)
T KOG0495|consen 590 YAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLDNV 667 (913)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhH
Confidence 67777788999999999887764 3566888888889999999999999999876 456776666666666677899
Q ss_pred HHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009066 290 DLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKP-QPAIFGTLLSACRVHKRLDLAEFAAMNL 367 (545)
Q Consensus 290 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~ 367 (545)
++|++++++..+. ++.-...|-.+.+.+-+.++++.|.+.|..- ..-| ....|-.|...--+.|.+-.|..++++.
T Consensus 668 eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildra 745 (913)
T KOG0495|consen 668 EEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRA 745 (913)
T ss_pred HHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 9999999998874 3555678889999999999999999988766 3335 4578888888888999999999999999
Q ss_pred hcCCCCCCchhHHHHHHHHHHcCCchHHHHHHHHhhhCCCccCCceeEEE
Q 009066 368 FNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIE 417 (545)
Q Consensus 368 ~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~ 417 (545)
.-.+|.+.. .|...+.+-.+.|+.+.|..+..+..+.- |..|.-|.+
T Consensus 746 rlkNPk~~~-lwle~Ir~ElR~gn~~~a~~lmakALQec--p~sg~LWaE 792 (913)
T KOG0495|consen 746 RLKNPKNAL-LWLESIRMELRAGNKEQAELLMAKALQEC--PSSGLLWAE 792 (913)
T ss_pred HhcCCCcch-hHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccchhHHH
Confidence 999999998 99999999999999999998877766532 445666643
No 49
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.37 E-value=1.8e-10 Score=106.25 Aligned_cols=196 Identities=16% Similarity=0.085 Sum_probs=158.3
Q ss_pred cccHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 009066 207 TTALTPLISMYCKCGDLEDACKLFLEIQR---KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC 283 (545)
Q Consensus 207 ~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 283 (545)
...+..+...|...|++++|.+.|++..+ .+...+..+...|...|++++|.+.+++..+.. +.+...+..+...+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 45566788888889999999999887754 346678888888999999999999999988754 23456677777888
Q ss_pred HccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHH
Q 009066 284 NHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKP-QPAIFGTLLSACRVHKRLDLAE 361 (545)
Q Consensus 284 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~A~ 361 (545)
...|++++|.+.++...+....+.....+..+...+...|++++|...+++. ...| +...+..+...+...|++++|.
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHH
Confidence 8999999999999988764222334567778888999999999999999887 3334 4567888888999999999999
Q ss_pred HHHHHHhcCCCCCCchhHHHHHHHHHHcCCchHHHHHHHHhhh
Q 009066 362 FAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKE 404 (545)
Q Consensus 362 ~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 404 (545)
..+++..+..|.+.. .+..++.++...|+.++|..+.+.+..
T Consensus 190 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 190 AYLERYQQTYNQTAE-SLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHhCCCCHH-HHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 999999888887766 788888999999999999998887754
No 50
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.36 E-value=3e-09 Score=108.46 Aligned_cols=345 Identities=12% Similarity=0.109 Sum_probs=184.7
Q ss_pred CCHHHHHHHHhcCC---CCCeehHHHHHHHHHhCCCHHHHHHHHhhC---CcCCHhHHHHHHHHHHHcCChHHHHHHHhh
Q 009066 53 DDVVAAFDFFQRLP---IKDTASWNTMISGFVQKKNMAKARDLFLAM---PEKNSVSWSAMISGYIECGQLDKAVELFKV 126 (545)
Q Consensus 53 g~~~~A~~~~~~m~---~~d~~~~~~li~~~~~~g~~~~a~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~f~~ 126 (545)
|++++|.+++.++. +.+...|-+|...|-+.|+.+++...+-.. .+.|...|-.+.+...+.|.+++|.-.|.+
T Consensus 153 g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~r 232 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSR 232 (895)
T ss_pred CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 66667776666665 334456666666676677666666554322 234556666666666666667777766666
Q ss_pred CCCCCcccHHHH---HHHhcchhhhccCChHHHHHHHHHHHhCCCCCCHHH----HHHHHHHHhccCcHHHHHHHHHHHH
Q 009066 127 APVKSVVAWTAM---ISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASS----LSSVLLGCSHLSSLQLGKQVHQLVF 199 (545)
Q Consensus 127 ~~~~~~~~~~~l---i~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~pd~~t----~~~ll~~~~~~~~~~~a~~~~~~~~ 199 (545)
..+.++..|-.+ ...| -+.|+...|++-|.++.+...+.|..- .-.++..+...++-+.|.+.+....
T Consensus 233 AI~~~p~n~~~~~ers~L~-----~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~ 307 (895)
T KOG2076|consen 233 AIQANPSNWELIYERSSLY-----QKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGAL 307 (895)
T ss_pred HHhcCCcchHHHHHHHHHH-----HHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 554433333322 3344 556666667666666665432223332 2233344445555566666665555
Q ss_pred hC-CCCCCcccHHHHHHHHHhcCCHHHHHHHHHhccC--------------------------CChhhHHH----HHHHH
Q 009066 200 KS-PLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR--------------------------KDVVTWNA----MISGY 248 (545)
Q Consensus 200 ~~-g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--------------------------~~~~~~~~----li~~~ 248 (545)
.. +-..+...++.++.+|.+...++.|......+.. ++..+|+. +.-++
T Consensus 308 s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL 387 (895)
T KOG2076|consen 308 SKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICL 387 (895)
T ss_pred hhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhh
Confidence 42 2233445566666666666666666555444322 01111111 11122
Q ss_pred H--HcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHH
Q 009066 249 A--QHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLV 326 (545)
Q Consensus 249 ~--~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 326 (545)
. +.++..+++.-|..-....+.-+...|.-+..++...|.+.+|..+|..+... ....+..+|--+..+|...|..+
T Consensus 388 ~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~-~~~~~~~vw~~~a~c~~~l~e~e 466 (895)
T KOG2076|consen 388 VHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNR-EGYQNAFVWYKLARCYMELGEYE 466 (895)
T ss_pred hcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcC-ccccchhhhHHHHHHHHHHhhHH
Confidence 2 22233333333332222112223345666666777777777777777666543 22223556666777777777777
Q ss_pred HHHHHHHhC-CCCCCH-hHHHHHHHHHHhcCCHHHHHHHHHHHhcCCC---------CCCchhHHHHHHHHHHcCCchHH
Q 009066 327 EAVDLIKKM-PFKPQP-AIFGTLLSACRVHKRLDLAEFAAMNLFNLNP---------ANAAGCYVQLANIYAAMKKWDDV 395 (545)
Q Consensus 327 ~A~~~~~~m-~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p---------~~~~~~~~~l~~~~~~~g~~~~a 395 (545)
+|.+.|++. ...|+. ..--+|...+.+.|+.++|.+.++.+..-+| .... .......++.+.|+.++-
T Consensus 467 ~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~r-i~~~r~d~l~~~gk~E~f 545 (895)
T KOG2076|consen 467 EAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERR-ILAHRCDILFQVGKREEF 545 (895)
T ss_pred HHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHH-HHHHHHHHHHHhhhHHHH
Confidence 777777665 333432 3344455566667777777777666553221 1112 445556667777777765
Q ss_pred HHHHHHhhh
Q 009066 396 ARIRLSMKE 404 (545)
Q Consensus 396 ~~~~~~m~~ 404 (545)
..+-..|..
T Consensus 546 i~t~~~Lv~ 554 (895)
T KOG2076|consen 546 INTASTLVD 554 (895)
T ss_pred HHHHHHHHH
Confidence 555555543
No 51
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=4.1e-09 Score=102.12 Aligned_cols=251 Identities=13% Similarity=0.076 Sum_probs=199.6
Q ss_pred hccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHH
Q 009066 148 VENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC 227 (545)
Q Consensus 148 ~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 227 (545)
...+++.+.++++....+.. ++....+..-|.++...|+..+-..+=..+++. .|....+|-++.--|.-.|+..+|+
T Consensus 255 y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~seAR 332 (611)
T KOG1173|consen 255 YYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKYSEAR 332 (611)
T ss_pred HHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCcHHHH
Confidence 67889999999999988764 455555555566777778777666665666665 3667888999999999999999999
Q ss_pred HHHHhccCCC---hhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHhHHhcC
Q 009066 228 KLFLEIQRKD---VVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYG 304 (545)
Q Consensus 228 ~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 304 (545)
+.|.+...-| ...|-.....|+-.|..++|+..+...-+. ++-...-+.-+.--|.+.++.+.|.++|.+... -
T Consensus 333 ry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~a--i 409 (611)
T KOG1173|consen 333 RYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALA--I 409 (611)
T ss_pred HHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHHHHh--c
Confidence 9999876533 468999999999999999999999887663 111122233344468889999999999988874 3
Q ss_pred CCCCHHHHHHHHHHHhHcCCHHHHHHHHHhC--C------CCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC
Q 009066 305 IAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM--P------FKP-QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANA 375 (545)
Q Consensus 305 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m--~------~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~ 375 (545)
.+.|+.+.+-+.-.....+.+.+|..+|+.. + .++ -..+++.|..+|++.+.+++|+..+++.+.+.|.+.
T Consensus 410 ~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~ 489 (611)
T KOG1173|consen 410 APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDA 489 (611)
T ss_pred CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCch
Confidence 3556778888888888899999999999876 1 111 234688999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHcCCchHHHHHHHHhhh
Q 009066 376 AGCYVQLANIYAAMKKWDDVARIRLSMKE 404 (545)
Q Consensus 376 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 404 (545)
. +|..++-+|...|+++.|...|.+...
T Consensus 490 ~-~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 490 S-THASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred h-HHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 8 999999999999999999999987643
No 52
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.33 E-value=4.1e-09 Score=98.19 Aligned_cols=251 Identities=14% Similarity=0.118 Sum_probs=154.2
Q ss_pred ccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHH
Q 009066 149 ENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK 228 (545)
Q Consensus 149 ~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~ 228 (545)
..|++.+|.++..+-.+.+-.| ...|.....+.-+.|+.+.+..+..++.+.--.++..+.-+........|+++.|..
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 3566666666665555444222 233444444455566666666666666555334445555555555566666666655
Q ss_pred HHHhcc---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHccCcHHHHHHHHHH
Q 009066 229 LFLEIQ---RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDS-------ITFVALLLACNHAGLVDLGIQYFDS 298 (545)
Q Consensus 229 ~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~t~~~ll~a~~~~g~~~~a~~~~~~ 298 (545)
-.+++. .++.........+|.+.|++.+...+..+|.+.|+--|+ .++..++.-+...+..+.-...++.
T Consensus 175 ~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 175 NVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 554433 245555566666666666666666666666665544332 2455555555544444444445554
Q ss_pred hHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhC---------------------------------CCCCCHhHHH
Q 009066 299 MVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM---------------------------------PFKPQPAIFG 345 (545)
Q Consensus 299 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m---------------------------------~~~p~~~~~~ 345 (545)
..+ ....++..-.+++.-+.++|+.++|.+++++. ....++..+.
T Consensus 255 ~pr--~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~ 332 (400)
T COG3071 255 QPR--KLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLS 332 (400)
T ss_pred ccH--HhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHH
Confidence 443 23334444455555555566665555554432 0112447788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchHHHHHHHHhhh
Q 009066 346 TLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKE 404 (545)
Q Consensus 346 ~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 404 (545)
+|...|.+++.+.+|...|+..++..|... +|..++.++.+.|+.++|.+++++...
T Consensus 333 tLG~L~~k~~~w~kA~~~leaAl~~~~s~~--~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 333 TLGRLALKNKLWGKASEALEAALKLRPSAS--DYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhcCCChh--hHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 999999999999999999999999999876 899999999999999999999887653
No 53
>PRK12370 invasion protein regulator; Provisional
Probab=99.33 E-value=7.6e-10 Score=115.31 Aligned_cols=263 Identities=14% Similarity=0.049 Sum_probs=187.3
Q ss_pred CcccHHHHHHHhcchhhhccCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHh---------ccCcHHHHHHHHHHHHh
Q 009066 131 SVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPN-ASSLSSVLLGCS---------HLSSLQLGKQVHQLVFK 200 (545)
Q Consensus 131 ~~~~~~~li~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~pd-~~t~~~ll~~~~---------~~~~~~~a~~~~~~~~~ 200 (545)
+...|...+.+.........+..++|+++|++..+. .|+ ...+..+..++. ..+++++|...++.+++
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 344555555553111111234567999999999875 454 344554444333 23458999999999998
Q ss_pred CCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhccC--C-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-HHH
Q 009066 201 SPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR--K-DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDS-ITF 276 (545)
Q Consensus 201 ~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~ 276 (545)
.. +.+...+..+..++...|++++|...|++..+ | +...|..+...+...|++++|+..+++..+.. |+. ..+
T Consensus 333 ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~~~~ 409 (553)
T PRK12370 333 LD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRAAAG 409 (553)
T ss_pred cC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCChhhH
Confidence 86 55677888899999999999999999999874 3 46678889999999999999999999999854 432 223
Q ss_pred HHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhC-CCCCCH-hHHHHHHHHHHhc
Q 009066 277 VALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKPQP-AIFGTLLSACRVH 354 (545)
Q Consensus 277 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~~~~~li~~~~~~ 354 (545)
..++..+...|++++|...++++.+. ..+.++..+..+..+|...|++++|...+.++ +..|+. ..++.+...|...
T Consensus 410 ~~~~~~~~~~g~~eeA~~~~~~~l~~-~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 488 (553)
T PRK12370 410 ITKLWITYYHTGIDDAIRLGDELRSQ-HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQN 488 (553)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHh-ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhcc
Confidence 33444566689999999999988753 22234666788899999999999999999987 444544 4456666677777
Q ss_pred CCHHHHHHHHHHHhc---CCCCCCchhHHHHHHHHHHcCCchHHHHHHHHhhhCC
Q 009066 355 KRLDLAEFAAMNLFN---LNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENN 406 (545)
Q Consensus 355 g~~~~A~~~~~~~~~---~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 406 (545)
| +.|...++++++ ..|.+.. .+...|.-.|+-+.+..+ +++.+.|
T Consensus 489 g--~~a~~~l~~ll~~~~~~~~~~~----~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 489 S--ERALPTIREFLESEQRIDNNPG----LLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred H--HHHHHHHHHHHHHhhHhhcCch----HHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 7 477777777665 3454442 366677778887777766 7776654
No 54
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.32 E-value=2e-08 Score=95.29 Aligned_cols=399 Identities=11% Similarity=0.098 Sum_probs=289.3
Q ss_pred CCccHHHHHHHHHHhCCCChHHHHHHHccCCC--CCh-hhHHHHHHHHHcCCCCHHHHHHHHhc-CC-CCCeehHHHHHH
Q 009066 4 KTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQ--PDV-VSYNIMLSCILLNSDDVVAAFDFFQR-LP-IKDTASWNTMIS 78 (545)
Q Consensus 4 ~~~~~~~~li~~~~~~g~~~~~A~~~f~~~~~--~~~-~~~~~li~~~~~~~g~~~~A~~~~~~-m~-~~d~~~~~~li~ 78 (545)
.+..+|-..+.+=.++.. +..|+.+|+.... |.+ ..|...+-.=-.. |++..|+++|++ |. +||..+|++.|.
T Consensus 105 r~itLWlkYae~Emknk~-vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~L-gNi~gaRqiferW~~w~P~eqaW~sfI~ 182 (677)
T KOG1915|consen 105 RNITLWLKYAEFEMKNKQ-VNHARNVWDRAVTILPRVDQLWYKYIYMEEML-GNIAGARQIFERWMEWEPDEQAWLSFIK 182 (677)
T ss_pred ccchHHHHHHHHHHhhhh-HhHHHHHHHHHHHhcchHHHHHHHHHHHHHHh-cccHHHHHHHHHHHcCCCcHHHHHHHHH
Confidence 456677778888888888 9999999998652 322 2344444322334 999999999986 44 999999999999
Q ss_pred HHHhCCCHHHHHHHHhhCC--cCCHhHHHHHHHHHHHcCChHHHHHHHhhCCCC--C----cccHHHHHHHhcchhhhcc
Q 009066 79 GFVQKKNMAKARDLFLAMP--EKNSVSWSAMISGYIECGQLDKAVELFKVAPVK--S----VVAWTAMISGYMKFGYVEN 150 (545)
Q Consensus 79 ~~~~~g~~~~a~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~--~----~~~~~~li~~~~~~g~~~~ 150 (545)
.=.+-..++.|..+|++.. .|++.+|-.....=-++|.+..|+.+|+..... | ...+++...-- ..+
T Consensus 183 fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fE-----e~q 257 (677)
T KOG1915|consen 183 FELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFE-----ERQ 257 (677)
T ss_pred HHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-----HHH
Confidence 9999999999999999876 688999999999999999999999999875421 1 22333333333 556
Q ss_pred CChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhccCcHHHHHH--------HHHHHHhCCCCCCcccHHHHHHHHHhc
Q 009066 151 SWAEDGLKLLRMMIGLGIRPN--ASSLSSVLLGCSHLSSLQLGKQ--------VHQLVFKSPLCKDTTALTPLISMYCKC 220 (545)
Q Consensus 151 g~~~~A~~~~~~m~~~~~~pd--~~t~~~ll~~~~~~~~~~~a~~--------~~~~~~~~g~~~~~~~~~~li~~y~~~ 220 (545)
..++.|.-+|+-.+.. ++-+ ...|......=-+.|+...... -|+.+++.+ +.|-.+|--.+..-...
T Consensus 258 kE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~ 335 (677)
T KOG1915|consen 258 KEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESV 335 (677)
T ss_pred HHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhc
Confidence 6778888888877764 2323 2233333333234454333322 234444443 45666777788888888
Q ss_pred CCHHHHHHHHHhccCC--C---hhhHHHHHHH--------HHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH---
Q 009066 221 GDLEDACKLFLEIQRK--D---VVTWNAMISG--------YAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN--- 284 (545)
Q Consensus 221 g~~~~A~~~f~~~~~~--~---~~~~~~li~~--------~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~--- 284 (545)
|+.+...++|++.... . -..|.-.|-. =....+.+.+.++|+..++. ++-...||.-+--.|+
T Consensus 336 g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~fe 414 (677)
T KOG1915|consen 336 GDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFE 414 (677)
T ss_pred CCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHH
Confidence 9999999999998742 1 1233333322 13467889999999999883 4445677776544443
Q ss_pred -ccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHH
Q 009066 285 -HAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKP-QPAIFGTLLSACRVHKRLDLAE 361 (545)
Q Consensus 285 -~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~A~ 361 (545)
++.++..|++++...+ |.-|...++...|+.=.+.+.++....++++. ...| |..+|......-...|+.+.|.
T Consensus 415 IRq~~l~~ARkiLG~AI---G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaR 491 (677)
T KOG1915|consen 415 IRQLNLTGARKILGNAI---GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRAR 491 (677)
T ss_pred HHHcccHHHHHHHHHHh---ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHH
Confidence 6788999999998887 88999999999999999999999999999987 5556 6689999998889999999999
Q ss_pred HHHHHHhcCCCCC-CchhHHHHHHHHHHcCCchHHHHHHHHhhhCCCccCCceeEEEE
Q 009066 362 FAAMNLFNLNPAN-AAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEV 418 (545)
Q Consensus 362 ~~~~~~~~~~p~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~ 418 (545)
.+|+-++....-+ +...+-..++.-...|.++.|..+++++.++.-. ..+|+++
T Consensus 492 aifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h---~kvWisF 546 (677)
T KOG1915|consen 492 AIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQH---VKVWISF 546 (677)
T ss_pred HHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhccc---chHHHhH
Confidence 9999887643222 2225556666677899999999999999875422 1267764
No 55
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.30 E-value=1.2e-10 Score=117.80 Aligned_cols=263 Identities=14% Similarity=0.148 Sum_probs=193.1
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhccCCC
Q 009066 158 KLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKD 237 (545)
Q Consensus 158 ~~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~ 237 (545)
.++..+...|+.|+.+||.+++.-|+..|+.+.|- +|..|.-..++....+++.++......++.+.+. +|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 46778888999999999999999999999999999 9999999989999999999999999999988876 788
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHH
Q 009066 238 VVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVD 317 (545)
Q Consensus 238 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 317 (545)
..+|+.+..+|.++|+..- ++..++ -...+...++..|.-..-..++..+.-..+.-||.. ..+.
T Consensus 83 aDtyt~Ll~ayr~hGDli~-fe~veq-----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~il 147 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL-FEVVEQ-----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAIL 147 (1088)
T ss_pred hhHHHHHHHHHHhccchHH-HHHHHH-----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHH
Confidence 8999999999999999865 333333 122344556666666666666655432224455544 3555
Q ss_pred HHhHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcC-CHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchHHH
Q 009066 318 LLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHK-RLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVA 396 (545)
Q Consensus 318 ~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~ 396 (545)
...-.|.++.++++...+|...-.......+.-+.... .+++-....+...+ .|+.. +|..++.+-..+|+.+.|.
T Consensus 148 llv~eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e-~~~s~--~l~a~l~~alaag~~d~Ak 224 (1088)
T KOG4318|consen 148 LLVLEGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVE-APTSE--TLHAVLKRALAAGDVDGAK 224 (1088)
T ss_pred HHHHHHHHHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhc-CCChH--HHHHHHHHHHhcCchhhHH
Confidence 66677888899999988864321112222344333333 33444444444444 66654 8999999999999999999
Q ss_pred HHHHHhhhCCCccCCceeEEEECCEEEEEecCCCCCCChHHHHHHHHHHHHHHHHcCcccCCccc
Q 009066 397 RIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYVPDLEFA 461 (545)
Q Consensus 397 ~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~m~~~g~~pd~~~~ 461 (545)
.+...|+++|++..+.+.|-.+-+ ... ..-++.+.+-|++.|+.||..+.
T Consensus 225 ~ll~emke~gfpir~HyFwpLl~g--------~~~-------~q~~e~vlrgmqe~gv~p~seT~ 274 (1088)
T KOG4318|consen 225 NLLYEMKEKGFPIRAHYFWPLLLG--------INA-------AQVFEFVLRGMQEKGVQPGSETQ 274 (1088)
T ss_pred HHHHHHHHcCCCcccccchhhhhc--------Ccc-------chHHHHHHHHHHHhcCCCCcchh
Confidence 999999999999888887754322 111 12367788999999999999886
No 56
>PF13041 PPR_2: PPR repeat family
Probab=99.30 E-value=8.6e-12 Score=83.80 Aligned_cols=50 Identities=50% Similarity=0.789 Sum_probs=47.3
Q ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 009066 236 KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNH 285 (545)
Q Consensus 236 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 285 (545)
||+++||++|.+|++.|++++|.++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68999999999999999999999999999999999999999999999874
No 57
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.26 E-value=5.5e-08 Score=95.67 Aligned_cols=393 Identities=13% Similarity=0.177 Sum_probs=248.6
Q ss_pred cHHHHHHHHHHhCCCChHHHHHHHccCCC-----CChhhHHHHHHHHHcCCCCHHHHHHHHhcCCCCCeehHHHHHHHHH
Q 009066 7 VNWNSVLAGFAKQRGKLKDAQELFDKIPQ-----PDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFV 81 (545)
Q Consensus 7 ~~~~~li~~~~~~g~~~~~A~~~f~~~~~-----~~~~~~~~li~~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~ 81 (545)
.+|-..++...++|. +..-+.+|+.... .-...|...|...-.. |-++.+.++|++-.+-++..-+--|..++
T Consensus 103 RIwl~Ylq~l~~Q~~-iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~-~lPets~rvyrRYLk~~P~~~eeyie~L~ 180 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGL-ITRTRRTFDRALRALPVTQHDRIWDLYLKFVESH-GLPETSIRVYRRYLKVAPEAREEYIEYLA 180 (835)
T ss_pred HHHHHHHHHHHhcch-HHHHHHHHHHHHHhCchHhhccchHHHHHHHHhC-CChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 456666777888888 9999999987652 2223588888765566 88999999999988666667888889999
Q ss_pred hCCCHHHHHHHHhhCC----------------------------------------------cCC--HhHHHHHHHHHHH
Q 009066 82 QKKNMAKARDLFLAMP----------------------------------------------EKN--SVSWSAMISGYIE 113 (545)
Q Consensus 82 ~~g~~~~a~~~~~~~~----------------------------------------------~~~--~~~~~~li~~~~~ 113 (545)
+.+++++|.+.+...+ -+| -..|++|.+-|.+
T Consensus 181 ~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr 260 (835)
T KOG2047|consen 181 KSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIR 260 (835)
T ss_pred hccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHH
Confidence 9999999999888877 012 3468999999999
Q ss_pred cCChHHHHHHHhhCCCC--CcccHHHHHHHhcchh---------------------------------------------
Q 009066 114 CGQLDKAVELFKVAPVK--SVVAWTAMISGYMKFG--------------------------------------------- 146 (545)
Q Consensus 114 ~g~~~~A~~~f~~~~~~--~~~~~~~li~~~~~~g--------------------------------------------- 146 (545)
.|.++.|+.+|++..+. .+.-++.+-++|+...
T Consensus 261 ~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsV 340 (835)
T KOG2047|consen 261 SGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSV 340 (835)
T ss_pred hhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHH
Confidence 99999999999764321 1111222222221100
Q ss_pred ----------------hhccCChHHHHHHHHHHHhCCCCCC------HHHHHHHHHHHhccCcHHHHHHHHHHHHhCCCC
Q 009066 147 ----------------YVENSWAEDGLKLLRMMIGLGIRPN------ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLC 204 (545)
Q Consensus 147 ----------------~~~~g~~~~A~~~~~~m~~~~~~pd------~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~ 204 (545)
....|+..+-...|.+..+. +.|- ...|..+...|-..|+++.|+.+|....+..++
T Consensus 341 lLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~ 419 (835)
T KOG2047|consen 341 LLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYK 419 (835)
T ss_pred HHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCcc
Confidence 23345566666666666543 2332 234666777788888888888888888876543
Q ss_pred CC---cccHHHHHHHHHhcCCHHHHHHHHHhccC---C------------------ChhhHHHHHHHHHHcCChHHHHHH
Q 009066 205 KD---TTALTPLISMYCKCGDLEDACKLFLEIQR---K------------------DVVTWNAMISGYAQHGKGEKALRL 260 (545)
Q Consensus 205 ~~---~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~------------------~~~~~~~li~~~~~~g~~~~A~~~ 260 (545)
.- ..+|..-.++-.+..+++.|.++.+.... + +...|...+..--..|-++....+
T Consensus 420 ~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~v 499 (835)
T KOG2047|consen 420 TVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAV 499 (835)
T ss_pred chHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHH
Confidence 32 34566666666677778888877766531 1 223444444443334444444444
Q ss_pred HHHHHHcCC----------------------------------CCCHH-HHHHHHHHH---HccCcHHHHHHHHHHhHHh
Q 009066 261 FDKMKDEGM----------------------------------KPDSI-TFVALLLAC---NHAGLVDLGIQYFDSMVND 302 (545)
Q Consensus 261 ~~~m~~~g~----------------------------------~p~~~-t~~~ll~a~---~~~g~~~~a~~~~~~~~~~ 302 (545)
|+++.+..+ .|+.. .|+..|.-+ .....++.|+.+|++..+
T Consensus 500 YdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~- 578 (835)
T KOG2047|consen 500 YDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD- 578 (835)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-
Confidence 444433221 23332 233333222 123467888888888876
Q ss_pred cCCCCCHH--HHHHHHHHHhHcCCHHHHHHHHHhC--CCCCC--HhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCc
Q 009066 303 YGIAAKPD--HYTCMVDLLGRAGKLVEAVDLIKKM--PFKPQ--PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAA 376 (545)
Q Consensus 303 ~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 376 (545)
+.+|... .|-.....=-+-|....|+.++++. .+++. ...||..|.-.+..=-+..-..+|+++++.-|+...
T Consensus 579 -~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~ 657 (835)
T KOG2047|consen 579 -GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKA 657 (835)
T ss_pred -cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHH
Confidence 5565422 2222223333467788888888887 33332 257888776555444455667888888888887643
Q ss_pred h-hHHHHHHHHHHcCCchHHHHHHHHhhh
Q 009066 377 G-CYVQLANIYAAMKKWDDVARIRLSMKE 404 (545)
Q Consensus 377 ~-~~~~l~~~~~~~g~~~~a~~~~~~m~~ 404 (545)
. .....+..-.+.|..+.|+.++.--.+
T Consensus 658 r~mclrFAdlEtklGEidRARaIya~~sq 686 (835)
T KOG2047|consen 658 REMCLRFADLETKLGEIDRARAIYAHGSQ 686 (835)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHhhhh
Confidence 1 233556677889999999999875544
No 58
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.25 E-value=2.6e-08 Score=92.91 Aligned_cols=275 Identities=12% Similarity=0.059 Sum_probs=187.2
Q ss_pred CCCHHHHHHHHhhCCcC---CHhHHHHHHHHHHHcCChHHHHHHHhhCCCC--C--cccHHHHHHHhcchhhhccCChHH
Q 009066 83 KKNMAKARDLFLAMPEK---NSVSWSAMISGYIECGQLDKAVELFKVAPVK--S--VVAWTAMISGYMKFGYVENSWAED 155 (545)
Q Consensus 83 ~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~--~--~~~~~~li~~~~~~g~~~~g~~~~ 155 (545)
.|++.+|+++..+-.+. ....|..-..+--..|+.+.|-..+.+..++ | ....-+..... ...|+.+.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarll-----l~~~d~~a 171 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLL-----LNRRDYPA 171 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHH-----HhCCCchh
Confidence 46666666666654432 2233444444555666666666666655433 2 22333444444 66666666
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhCCCCCCc-------ccHHHHHHHHHhcCCHHHHHH
Q 009066 156 GLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDT-------TALTPLISMYCKCGDLEDACK 228 (545)
Q Consensus 156 A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~-------~~~~~li~~y~~~g~~~~A~~ 228 (545)
|..-..++.+.+ +-+.........+|.+.|++.....+...+.+.|.-.+. .+|+.+++=....+..+.-..
T Consensus 172 A~~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~ 250 (400)
T COG3071 172 ARENVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKT 250 (400)
T ss_pred HHHHHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHH
Confidence 666666666543 224455566666667777777777777777666654443 244445544444444455455
Q ss_pred HHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCC
Q 009066 229 LFLEIQR---KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGI 305 (545)
Q Consensus 229 ~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 305 (545)
.++..+. .++..-.+++.-+.+.|+.++|.++.++..+.+..|+. ..+-.+.+.++...-.+..+.-.+.++.
T Consensus 251 ~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h~~ 326 (400)
T COG3071 251 WWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQHPE 326 (400)
T ss_pred HHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHHhCCC
Confidence 6666663 46777788888899999999999999999888777762 2223566778888777877777775444
Q ss_pred CCCHHHHHHHHHHHhHcCCHHHHHHHHHhC-CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 009066 306 AAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFN 369 (545)
Q Consensus 306 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 369 (545)
. +..+.+|...|.+.+.+.+|.+.|+.. +..|+...|+.+..++.+.|+.++|.+..++.+-
T Consensus 327 ~--p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 327 D--PLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred C--hhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4 478889999999999999999999976 7789999999999999999999999999988764
No 59
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.24 E-value=1.8e-09 Score=107.65 Aligned_cols=231 Identities=17% Similarity=0.196 Sum_probs=176.5
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHhC-----CC-CCCc-ccHHHHHHHHHhcCCHHHHHHHHHhccC-------C-
Q 009066 172 ASSLSSVLLGCSHLSSLQLGKQVHQLVFKS-----PL-CKDT-TALTPLISMYCKCGDLEDACKLFLEIQR-------K- 236 (545)
Q Consensus 172 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-----g~-~~~~-~~~~~li~~y~~~g~~~~A~~~f~~~~~-------~- 236 (545)
..|+..+...|...|+++.|..++++.++. |. .|.+ ...+.+...|...+++++|..+|+++.. +
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 346777888999999999999999988764 21 1222 2334577789999999999999998863 1
Q ss_pred ---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHc-----CC-CCCHH-HHHHHHHHHHccCcHHHHHHHHHHhHHhcC--
Q 009066 237 ---DVVTWNAMISGYAQHGKGEKALRLFDKMKDE-----GM-KPDSI-TFVALLLACNHAGLVDLGIQYFDSMVNDYG-- 304 (545)
Q Consensus 237 ---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~-~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-- 304 (545)
-..+++.|..+|.+.|++++|..++++..+- |. .|... -++.+...|...+.+++|..+++...+.+.
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 2357888888999999999999888876541 22 22322 355667788999999999999988766443
Q ss_pred CCCC----HHHHHHHHHHHhHcCCHHHHHHHHHhC---------CCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHhc-
Q 009066 305 IAAK----PDHYTCMVDLLGRAGKLVEAVDLIKKM---------PFKPQ-PAIFGTLLSACRVHKRLDLAEFAAMNLFN- 369 (545)
Q Consensus 305 ~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~- 369 (545)
+.++ ..+++.|...|...|++++|.+++++. +..+. ....+.|...|.+.+++++|.++|.+...
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 2222 467899999999999999999999877 11222 35678888999999999999999987754
Q ss_pred ---CCCCC---CchhHHHHHHHHHHcCCchHHHHHHHHhh
Q 009066 370 ---LNPAN---AAGCYVQLANIYAAMKKWDDVARIRLSMK 403 (545)
Q Consensus 370 ---~~p~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 403 (545)
.+|+. .. +|..|+..|...|++|+|.++.+...
T Consensus 439 ~~~~g~~~~~~~~-~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 439 MKLCGPDHPDVTY-TYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHhCCCCCchHH-HHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 34443 34 78899999999999999999988775
No 60
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.24 E-value=4e-09 Score=97.18 Aligned_cols=196 Identities=17% Similarity=0.167 Sum_probs=116.8
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHH
Q 009066 173 SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR---KDVVTWNAMISGYA 249 (545)
Q Consensus 173 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~ 249 (545)
..+..+...+...|++++|...++.+++.. +.+...+..+...|...|++++|.+.|++..+ .+...+..+...+.
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 110 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 344445555555566666666665555443 23344555566666666666666666665542 23445666666666
Q ss_pred HcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHH
Q 009066 250 QHGKGEKALRLFDKMKDEGMKP-DSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEA 328 (545)
Q Consensus 250 ~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 328 (545)
..|++++|...|++.......| ....+..+..++...|++++|...+.+..+. .+.+...+..+...+...|++++|
T Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI--DPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCChHHHHHHHHHHHHcCCHHHH
Confidence 6777777777777766532222 2234445556666777777777777776652 233455666777777777777777
Q ss_pred HHHHHhC-CCC-CCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCC
Q 009066 329 VDLIKKM-PFK-PQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLN 371 (545)
Q Consensus 329 ~~~~~~m-~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 371 (545)
...+++. ... .+...+..+...+...|+.+.|....+.+....
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 233 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLF 233 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 7777665 212 244555566666777777777777766665443
No 61
>PF13041 PPR_2: PPR repeat family
Probab=99.22 E-value=2.8e-11 Score=81.29 Aligned_cols=50 Identities=30% Similarity=0.543 Sum_probs=45.3
Q ss_pred CCcccHHHHHHHhcchhhhccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 009066 130 KSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSH 184 (545)
Q Consensus 130 ~~~~~~~~li~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~ 184 (545)
||+++||++|.+| .+.|++++|+++|++|.+.|++||..||++++++|++
T Consensus 1 P~~~~yn~li~~~-----~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGY-----CKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHH-----HHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 6888999999999 8999999999999999999999999999999998874
No 62
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=6.1e-08 Score=90.55 Aligned_cols=360 Identities=12% Similarity=0.064 Sum_probs=238.3
Q ss_pred CccHHHHHHHHHHhCCCChHHHHHHHccCCC-CChhhHHHHHHHHHcCCCCHHHHHHHHh----cCC-------------
Q 009066 5 TTVNWNSVLAGFAKQRGKLKDAQELFDKIPQ-PDVVSYNIMLSCILLNSDDVVAAFDFFQ----RLP------------- 66 (545)
Q Consensus 5 ~~~~~~~li~~~~~~g~~~~~A~~~f~~~~~-~~~~~~~~li~~~~~~~g~~~~A~~~~~----~m~------------- 66 (545)
|...-...+..|-..++ -++|.....+.|. ....--|.|+.-+...+++-.++.--+. +.+
T Consensus 96 ~~e~~r~~aecy~~~~n-~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~ 174 (564)
T KOG1174|consen 96 DAEQRRRAAECYRQIGN-TDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELG 174 (564)
T ss_pred cHHHHHHHHHHHHHHcc-chHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHh
Confidence 34444556778888888 8899999888884 3344455555555444333222211111 111
Q ss_pred ----------------CCCeehHHHHHHHHHh--CCCHHHHHHHHhhCC-----cCCHhHHHHHHHHHHHcCChHHHHHH
Q 009066 67 ----------------IKDTASWNTMISGFVQ--KKNMAKARDLFLAMP-----EKNSVSWSAMISGYIECGQLDKAVEL 123 (545)
Q Consensus 67 ----------------~~d~~~~~~li~~~~~--~g~~~~a~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~ 123 (545)
+|+..+...-+.++++ .++-..|.+++-.+. ..|+....++.+.|...|+.++|...
T Consensus 175 v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~ 254 (564)
T KOG1174|consen 175 VNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDI 254 (564)
T ss_pred hcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHH
Confidence 1222222233444433 344334443332221 45788888999999999999999999
Q ss_pred HhhCCCCCcccHHHH---HHHhcchhhhccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHh
Q 009066 124 FKVAPVKSVVAWTAM---ISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK 200 (545)
Q Consensus 124 f~~~~~~~~~~~~~l---i~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 200 (545)
|++...-|+.+..+| .-.+ .+.|+.+....+...+.... .-....|..-+...-..++++.|..+-+..++
T Consensus 255 Fe~~~~~dpy~i~~MD~Ya~LL-----~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~ 328 (564)
T KOG1174|consen 255 FSSTLCANPDNVEAMDLYAVLL-----GQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCID 328 (564)
T ss_pred HHHHhhCChhhhhhHHHHHHHH-----HhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhc
Confidence 988665555433332 1112 56677777777777766432 12233333333444556778888887777776
Q ss_pred CCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhcc--C-CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 009066 201 SPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ--R-KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFV 277 (545)
Q Consensus 201 ~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~--~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 277 (545)
.. +.++..+-.-...+...|+.++|.--|.... . -+..+|..++..|...|++.+|.-+-+...+. +..+..+..
T Consensus 329 ~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~Lt 406 (564)
T KOG1174|consen 329 SE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLT 406 (564)
T ss_pred cC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhh
Confidence 64 3445555555677778899999999998765 3 37889999999999999999999887776553 334555554
Q ss_pred HHH-HHHH-ccCcHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHhHcCCHHHHHHHHHhC-CCCCCHhHHHHHHHHHHh
Q 009066 278 ALL-LACN-HAGLVDLGIQYFDSMVNDYGIAAK-PDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKPQPAIFGTLLSACRV 353 (545)
Q Consensus 278 ~ll-~a~~-~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~li~~~~~ 353 (545)
.+. ..|. ....-++|.+++++..+ +.|+ ....+.+...+.+.|+.+++..++++. ...||....+.|...++.
T Consensus 407 L~g~~V~~~dp~~rEKAKkf~ek~L~---~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A 483 (564)
T KOG1174|consen 407 LFGTLVLFPDPRMREKAKKFAEKSLK---INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRA 483 (564)
T ss_pred hhcceeeccCchhHHHHHHHHHhhhc---cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 442 2332 33345788888887663 4565 455677888999999999999999877 556899999999999999
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCc
Q 009066 354 HKRLDLAEFAAMNLFNLNPANAA 376 (545)
Q Consensus 354 ~g~~~~A~~~~~~~~~~~p~~~~ 376 (545)
.+.+++|...|..++.++|++..
T Consensus 484 ~Ne~Q~am~~y~~ALr~dP~~~~ 506 (564)
T KOG1174|consen 484 QNEPQKAMEYYYKALRQDPKSKR 506 (564)
T ss_pred hhhHHHHHHHHHHHHhcCccchH
Confidence 99999999999999999999864
No 63
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.18 E-value=2.1e-08 Score=102.04 Aligned_cols=104 Identities=13% Similarity=0.126 Sum_probs=83.3
Q ss_pred HHHHHHHHHHhHcCCHHHHHHHHHhCC-----CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhc---CCCCCCchhHHH
Q 009066 310 DHYTCMVDLLGRAGKLVEAVDLIKKMP-----FKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFN---LNPANAAGCYVQ 381 (545)
Q Consensus 310 ~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~p~~~~~~~~~ 381 (545)
..|..||+.+....+++.|..+.++.. +.-|...+..+.+.+.+++....+..+++.+.+ ..|.... ++..
T Consensus 492 g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~-~~f~ 570 (1088)
T KOG4318|consen 492 GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAI-ILFP 570 (1088)
T ss_pred hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHH-HHHH
Confidence 568899999999999999999999882 234556688889999999999999999988865 3344344 6778
Q ss_pred HHHHHHHcCCchHHHHHHHHhhhCCCccCCceeE
Q 009066 382 LANIYAAMKKWDDVARIRLSMKENNVVKMPGYSW 415 (545)
Q Consensus 382 l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~ 415 (545)
+.+.-+..|+.+...+.++-+...|+.- .+.-|
T Consensus 571 ~lns~a~agqqe~Lkkl~d~lvslgl~e-tgPl~ 603 (1088)
T KOG4318|consen 571 LLNSGAPAGQQEKLKKLADILVSLGLSE-TGPLW 603 (1088)
T ss_pred HHhhhhhccCHHHHHHHHHHHHHhhhhh-cccce
Confidence 8888899999999999999999888865 34444
No 64
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=3.8e-08 Score=95.63 Aligned_cols=269 Identities=12% Similarity=0.044 Sum_probs=207.6
Q ss_pred CCHhHHHHHHHHHHHcCChHHHHHHHhhCCCCCcc---cHHHHHHHhcchhhhccCChHHHHHHHHHHHhCCCCCCHHHH
Q 009066 99 KNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVV---AWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSL 175 (545)
Q Consensus 99 ~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~---~~~~li~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~pd~~t~ 175 (545)
.++.+...-.+-+...+++.+..++++.+.+.|+. .+..=|.++ ...|+..+-..+=.+|++.- +-...+|
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l-----~el~~~n~Lf~lsh~LV~~y-P~~a~sW 315 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACL-----YELGKSNKLFLLSHKLVDLY-PSKALSW 315 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHH-----HHhcccchHHHHHHHHHHhC-CCCCcch
Confidence 35666667777888899999999999988766553 444556677 78888888777778888753 5567899
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHHcC
Q 009066 176 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR---KDVVTWNAMISGYAQHG 252 (545)
Q Consensus 176 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g 252 (545)
-++.--|-..|...+|++.|....... +.-...|-...+.|+-.|.-|.|...+....+ ..-..+--+.--|.+.+
T Consensus 316 ~aVg~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~ 394 (611)
T KOG1173|consen 316 FAVGCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTN 394 (611)
T ss_pred hhHHHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhc
Confidence 999998888999999999999887654 23355788999999999999999988876543 11112223444677889
Q ss_pred ChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHhHHhc-CCC----CCHHHHHHHHHHHhHcCCHH
Q 009066 253 KGEKALRLFDKMKDEGMKP-DSITFVALLLACNHAGLVDLGIQYFDSMVNDY-GIA----AKPDHYTCMVDLLGRAGKLV 326 (545)
Q Consensus 253 ~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-~~~----~~~~~~~~li~~~~~~g~~~ 326 (545)
+.+.|...|.+... +.| |....+-+.-.....+.+.+|..+|+.....- .+. .-..+++.|..+|.+.++++
T Consensus 395 n~kLAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~ 472 (611)
T KOG1173|consen 395 NLKLAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYE 472 (611)
T ss_pred cHHHHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHH
Confidence 99999999999876 445 44555555555556789999999998876210 111 13456889999999999999
Q ss_pred HHHHHHHhC-C-CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCc
Q 009066 327 EAVDLIKKM-P-FKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAA 376 (545)
Q Consensus 327 ~A~~~~~~m-~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 376 (545)
+|+..+++. . ...|..++.++.-.|...|+++.|...|.+.+.+.|++..
T Consensus 473 eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~ 524 (611)
T KOG1173|consen 473 EAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIF 524 (611)
T ss_pred HHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHH
Confidence 999999987 2 2347889999999999999999999999999999999964
No 65
>PRK12370 invasion protein regulator; Provisional
Probab=99.18 E-value=3.9e-09 Score=109.99 Aligned_cols=247 Identities=13% Similarity=0.031 Sum_probs=174.7
Q ss_pred CChHHHHHHHhhCCCCC---cccHHHHHHHhcchhh----hccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCc
Q 009066 115 GQLDKAVELFKVAPVKS---VVAWTAMISGYMKFGY----VENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSS 187 (545)
Q Consensus 115 g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~----~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~~ 187 (545)
+++++|...|++..+.| ...|..+..++...+. ...++.++|...+++..+.+ +-+...+..+..++...|+
T Consensus 275 ~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccC
Confidence 34678899998876543 3455555554422110 23456899999999998864 3366777778788889999
Q ss_pred HHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhccC--CC-hhhHHHHHHHHHHcCChHHHHHHHHHH
Q 009066 188 LQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR--KD-VVTWNAMISGYAQHGKGEKALRLFDKM 264 (545)
Q Consensus 188 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m 264 (545)
+++|...++++++.+ +.+...+..+...|...|++++|...|++..+ |+ ...+..++..+...|++++|+..+++.
T Consensus 354 ~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~ 432 (553)
T PRK12370 354 YIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDEL 432 (553)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHH
Confidence 999999999999986 45567788899999999999999999999875 33 223344555677789999999999998
Q ss_pred HHcCCCCC-HHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHhHcCCHHHHHHHHHhC----CCC
Q 009066 265 KDEGMKPD-SITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK-PDHYTCMVDLLGRAGKLVEAVDLIKKM----PFK 338 (545)
Q Consensus 265 ~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~ 338 (545)
.... .|+ ...+..+..++...|+.++|...+.++... .|+ ....+.+...|...| ++|...++++ ...
T Consensus 433 l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~ 506 (553)
T PRK12370 433 RSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ---EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRI 506 (553)
T ss_pred HHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc---cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHh
Confidence 7653 344 344566677888999999999999887643 343 444556666777777 4777766665 223
Q ss_pred CCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCC
Q 009066 339 PQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNP 372 (545)
Q Consensus 339 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p 372 (545)
|...-+ +-..+.-+|+.+.+... +++.+.+.
T Consensus 507 ~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~~ 537 (553)
T PRK12370 507 DNNPGL--LPLVLVAHGEAIAEKMW-NKFKNEDN 537 (553)
T ss_pred hcCchH--HHHHHHHHhhhHHHHHH-HHhhccch
Confidence 433334 44456677777777766 77766543
No 66
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.12 E-value=8.5e-09 Score=102.80 Aligned_cols=231 Identities=14% Similarity=0.111 Sum_probs=174.0
Q ss_pred cHHHHHHHhcchhhhccCChHHHHHHHHHHHhC-----C-CCCCHHHH-HHHHHHHhccCcHHHHHHHHHHHHhC-----
Q 009066 134 AWTAMISGYMKFGYVENSWAEDGLKLLRMMIGL-----G-IRPNASSL-SSVLLGCSHLSSLQLGKQVHQLVFKS----- 201 (545)
Q Consensus 134 ~~~~li~~~~~~g~~~~g~~~~A~~~~~~m~~~-----~-~~pd~~t~-~~ll~~~~~~~~~~~a~~~~~~~~~~----- 201 (545)
+...+...| ...|++++|+.++++.++. | ..|...+. +.+...|...+.+++|..+|+.++..
T Consensus 201 ~~~~La~~y-----~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~ 275 (508)
T KOG1840|consen 201 TLRNLAEMY-----AVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVF 275 (508)
T ss_pred HHHHHHHHH-----HHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhc
Confidence 344477788 8999999999999887653 2 13444433 33667788999999999999998763
Q ss_pred CC--CCCcccHHHHHHHHHhcCCHHHHHHHHHhccC----------CCh-hhHHHHHHHHHHcCChHHHHHHHHHHHHc-
Q 009066 202 PL--CKDTTALTPLISMYCKCGDLEDACKLFLEIQR----------KDV-VTWNAMISGYAQHGKGEKALRLFDKMKDE- 267 (545)
Q Consensus 202 g~--~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~----------~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~- 267 (545)
|- +.-..+++.|...|.+.|++++|...+++..+ +.+ ..++.++..+...+++++|..+++...+.
T Consensus 276 G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~ 355 (508)
T KOG1840|consen 276 GEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIY 355 (508)
T ss_pred CCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 31 11234566677789999999999888877642 222 24667778888999999999999886542
Q ss_pred --CCCCCH----HHHHHHHHHHHccCcHHHHHHHHHHhHHhc---CC--CC-CHHHHHHHHHHHhHcCCHHHHHHHHHhC
Q 009066 268 --GMKPDS----ITFVALLLACNHAGLVDLGIQYFDSMVNDY---GI--AA-KPDHYTCMVDLLGRAGKLVEAVDLIKKM 335 (545)
Q Consensus 268 --g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m 335 (545)
-+.++. .++..+...+.+.|++++|.++|++++... +. .+ ...+++.|...|.+.+++++|.++|.+.
T Consensus 356 ~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~ 435 (508)
T KOG1840|consen 356 LDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEA 435 (508)
T ss_pred HhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHH
Confidence 233343 478889999999999999999999887642 11 22 2456788999999999999999888765
Q ss_pred --------CCCCCH-hHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 009066 336 --------PFKPQP-AIFGTLLSACRVHKRLDLAEFAAMNLFN 369 (545)
Q Consensus 336 --------~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~ 369 (545)
+..|++ .+|..|...|...|+++.|+++.+++..
T Consensus 436 ~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 436 KDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 344555 6899999999999999999999988863
No 67
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.12 E-value=1.6e-08 Score=96.60 Aligned_cols=211 Identities=14% Similarity=0.050 Sum_probs=130.8
Q ss_pred CcHHHHHHHHHHHHhCC-CCC--CcccHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHHH
Q 009066 186 SSLQLGKQVHQLVFKSP-LCK--DTTALTPLISMYCKCGDLEDACKLFLEIQR---KDVVTWNAMISGYAQHGKGEKALR 259 (545)
Q Consensus 186 ~~~~~a~~~~~~~~~~g-~~~--~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 259 (545)
+..+.+..-+.+++... ..| ....+..+...|.+.|+.++|...|++..+ .+...|+.+...|...|++++|+.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 34555566666666432 112 134566677778888888888888877654 356778888888888888888888
Q ss_pred HHHHHHHcCCCCC-HHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhC--C
Q 009066 260 LFDKMKDEGMKPD-SITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM--P 336 (545)
Q Consensus 260 ~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m--~ 336 (545)
.|++..+. .|+ ..++..+..++...|++++|.+.|+...+. .|+..........+...++.++|...|.+. .
T Consensus 120 ~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 120 AFDSVLEL--DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 88888764 343 456666667777788888888888777653 343322222222334567788888888654 2
Q ss_pred CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHh-------cCCCCCCchhHHHHHHHHHHcCCchHHHHHHHHhhhCC
Q 009066 337 FKPQPAIFGTLLSACRVHKRLDLAEFAAMNLF-------NLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENN 406 (545)
Q Consensus 337 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 406 (545)
..|+...| .......|+...+ ..++.+. ++.|+... +|..|+.++.+.|++++|...|++..+.+
T Consensus 195 ~~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~e-a~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 195 LDKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCE-TYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred CCccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHH-HHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 22332222 1222234444333 2333332 33445555 78888888888888888888888877654
No 68
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.11 E-value=5.2e-08 Score=93.09 Aligned_cols=230 Identities=12% Similarity=-0.033 Sum_probs=162.8
Q ss_pred hccCChHHHHHHHHHHHhCC-CCCC--HHHHHHHHHHHhccCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHH
Q 009066 148 VENSWAEDGLKLLRMMIGLG-IRPN--ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 224 (545)
Q Consensus 148 ~~~g~~~~A~~~~~~m~~~~-~~pd--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~ 224 (545)
...+..+.++.-+.+++... ..|+ ...|......+...|+.++|...|...++.. +.+...|+.+...|...|+++
T Consensus 37 ~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~ 115 (296)
T PRK11189 37 QPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFD 115 (296)
T ss_pred CCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHH
Confidence 34456678888888888542 2332 3457777778899999999999999999875 456788999999999999999
Q ss_pred HHHHHHHhccC--C-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHhHH
Q 009066 225 DACKLFLEIQR--K-DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN 301 (545)
Q Consensus 225 ~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 301 (545)
+|...|++..+ | +..+|..+...+...|++++|++.|++..+. .|+..........+...++.++|...+.....
T Consensus 116 ~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~ 193 (296)
T PRK11189 116 AAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYE 193 (296)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 99999999864 3 5678888999999999999999999999875 45443222222334567789999999977654
Q ss_pred hcCCCCCHHHHHHHHHHHhHcCCH--HHHHHHHHhC-CC----CC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC
Q 009066 302 DYGIAAKPDHYTCMVDLLGRAGKL--VEAVDLIKKM-PF----KP-QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPA 373 (545)
Q Consensus 302 ~~~~~~~~~~~~~li~~~~~~g~~--~~A~~~~~~m-~~----~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~ 373 (545)
...|+... ..++..+ .|++ +++.+.+.+. .. .| ....|..+...+.+.|++++|+..|+++++.+|.
T Consensus 194 --~~~~~~~~-~~~~~~~--lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~ 268 (296)
T PRK11189 194 --KLDKEQWG-WNIVEFY--LGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVY 268 (296)
T ss_pred --hCCccccH-HHHHHHH--ccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc
Confidence 22333322 2333333 4444 3333333322 11 12 2357999999999999999999999999999985
Q ss_pred CCchhHHHHHHH
Q 009066 374 NAAGCYVQLANI 385 (545)
Q Consensus 374 ~~~~~~~~l~~~ 385 (545)
+....-..++..
T Consensus 269 ~~~e~~~~~~e~ 280 (296)
T PRK11189 269 NFVEHRYALLEL 280 (296)
T ss_pred hHHHHHHHHHHH
Confidence 543133334443
No 69
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.10 E-value=6e-09 Score=94.23 Aligned_cols=226 Identities=16% Similarity=0.134 Sum_probs=140.5
Q ss_pred HHHHHhcchhhhccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhCCCCCCcccHHHHHHH
Q 009066 137 AMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISM 216 (545)
Q Consensus 137 ~li~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 216 (545)
-|..+| .+.|.+.+|.+.|+.-+.. .|-+.||..+-.+|.+..++..|..++.+-++. ++.|+....-+...
T Consensus 228 Q~gkCy-----lrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi 299 (478)
T KOG1129|consen 228 QMGKCY-----LRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARI 299 (478)
T ss_pred HHHHHH-----HHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHH
Confidence 455566 6666666777666666654 344556666666666666666666666665554 23344444445555
Q ss_pred HHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHH
Q 009066 217 YCKCGDLEDACKLFLEIQR---KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGI 293 (545)
Q Consensus 217 y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 293 (545)
+-..++.++|.++|+...+ .++.+..++..+|.-.++++-|+.+|++++..|+. +...|..+.-+|...+++|-++
T Consensus 300 ~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L 378 (478)
T KOG1129|consen 300 HEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVL 378 (478)
T ss_pred HHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhH
Confidence 5555666666666665543 24444445555555566666666666666665544 4444555555555555555555
Q ss_pred HHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhCCCCCC--HhHHHHHHHHHHhcCCHHHHHHHHHHHhcCC
Q 009066 294 QYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQ--PAIFGTLLSACRVHKRLDLAEFAAMNLFNLN 371 (545)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 371 (545)
..|++...- -.+|+ ..+|..|.......||+..|.+.|+-.+..+
T Consensus 379 ~sf~RAlst---------------------------------at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d 425 (478)
T KOG1129|consen 379 PSFQRALST---------------------------------ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD 425 (478)
T ss_pred HHHHHHHhh---------------------------------ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC
Confidence 544443321 01122 2467777777777888888888888888888
Q ss_pred CCCCchhHHHHHHHHHHcCCchHHHHHHHHhhhC
Q 009066 372 PANAAGCYVQLANIYAAMKKWDDVARIRLSMKEN 405 (545)
Q Consensus 372 p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 405 (545)
|++.. +++.|+-.-.+.|++++|+.++...++.
T Consensus 426 ~~h~e-alnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 426 AQHGE-ALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred cchHH-HHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 88877 8888888888888888888888877654
No 70
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.09 E-value=1.4e-07 Score=90.04 Aligned_cols=334 Identities=13% Similarity=0.044 Sum_probs=214.1
Q ss_pred HHHHHcCCCCHHHHHHHHhcCC--CCC-eehHHHHHHHHHhCCCHHHHHHHHhhCCcCCHh---HHHHHHHHHHHcCChH
Q 009066 45 LSCILLNSDDVVAAFDFFQRLP--IKD-TASWNTMISGFVQKKNMAKARDLFLAMPEKNSV---SWSAMISGYIECGQLD 118 (545)
Q Consensus 45 i~~~~~~~g~~~~A~~~~~~m~--~~d-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~li~~~~~~g~~~ 118 (545)
-.-|.++ |.+++|++.|.+.. .|| +.-|.....+|...|++++..+--...++-++. ++.--..++-..|+++
T Consensus 122 GN~~f~~-kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~ 200 (606)
T KOG0547|consen 122 GNKFFRN-KKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGKFD 200 (606)
T ss_pred hhhhhhc-ccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHH
Confidence 3456777 89999999999877 666 778888999999999999998887777765443 4555556777888888
Q ss_pred HHHHHHhhCCCCCcccHHHHHHHhcchhhhccCChHHHHHHHH--------HHHh-CC--CCCCHHHHHHHHHHHhccCc
Q 009066 119 KAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLR--------MMIG-LG--IRPNASSLSSVLLGCSHLSS 187 (545)
Q Consensus 119 ~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~g~~~~A~~~~~--------~m~~-~~--~~pd~~t~~~ll~~~~~~~~ 187 (545)
+|..= +|-.++..++ ..+.-.--+.++++ +-.+ .+ +-|......+....+...-.
T Consensus 201 eal~D---------~tv~ci~~~F-----~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~ 266 (606)
T KOG0547|consen 201 EALFD---------VTVLCILEGF-----QNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPK 266 (606)
T ss_pred HHHHh---------hhHHHHhhhc-----ccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccccc
Confidence 87632 2223333333 22222222222222 2122 11 34555444444443321000
Q ss_pred HHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhc-CCHHHHHHHHHhcc-------CCC---------hhhHHHHHHHHHH
Q 009066 188 LQLGKQVHQLVFKSPLCKDTTALTPLISMYCKC-GDLEDACKLFLEIQ-------RKD---------VVTWNAMISGYAQ 250 (545)
Q Consensus 188 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~-g~~~~A~~~f~~~~-------~~~---------~~~~~~li~~~~~ 250 (545)
..+...+...|...-..+=..|... ..+..|...+.+-. ..+ ..+.+.-..-+.-
T Consensus 267 --------~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL 338 (606)
T KOG0547|consen 267 --------PLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFL 338 (606)
T ss_pred --------ccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhh
Confidence 0000000011111111111111111 12333333332211 111 1122222223445
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHH
Q 009066 251 HGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVD 330 (545)
Q Consensus 251 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 330 (545)
.|+.-.|...|+..+.....++.. |.-+..+|....+.++..+.|+...+ --+-++.+|-.-.+++.-.+++++|..
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~~--ldp~n~dvYyHRgQm~flL~q~e~A~a 415 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPAFNSL-YIKRAAAYADENQSEKMWKDFNKAED--LDPENPDVYYHRGQMRFLLQQYEEAIA 415 (606)
T ss_pred cCCchhhhhhHHHHHhcCcccchH-HHHHHHHHhhhhccHHHHHHHHHHHh--cCCCCCchhHhHHHHHHHHHHHHHHHH
Confidence 788999999999999865554443 66677789999999999999988875 335567888888899999999999999
Q ss_pred HHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchHHHHHHHHhhhC
Q 009066 331 LIKKM-PFKP-QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKEN 405 (545)
Q Consensus 331 ~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 405 (545)
=|++. .+.| +...|-.+.-+.-+.+.+++++..|++..+.-|+.+. .|+..+.++...+++++|.+.|+...+.
T Consensus 416 DF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~E-vy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 416 DFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPE-VYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCch-HHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 99988 5556 4466777777777888999999999999999999998 9999999999999999999999987653
No 71
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.08 E-value=1.2e-06 Score=85.82 Aligned_cols=377 Identities=12% Similarity=0.129 Sum_probs=226.4
Q ss_pred HHHHHHhCCCChHHHHHHHccCCC--C-ChhhHHHHHHHHHcCCCCHHHHHHHHhcCCCCCeehHHH--HHHHH--HhCC
Q 009066 12 VLAGFAKQRGKLKDAQELFDKIPQ--P-DVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNT--MISGF--VQKK 84 (545)
Q Consensus 12 li~~~~~~g~~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~~g~~~~A~~~~~~m~~~d~~~~~~--li~~~--~~~g 84 (545)
=++.+.+.|. +++|.+...++.. | |...+..=+-+..+. +.+++|+.+.+.-...+ +++. +=.+| .+.+
T Consensus 18 ~ln~~~~~~e-~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~-~ky~~ALk~ikk~~~~~--~~~~~~fEKAYc~Yrln 93 (652)
T KOG2376|consen 18 DLNRHGKNGE-YEEAVKTANKILSIVPDDEDAIRCKVVALIQL-DKYEDALKLIKKNGALL--VINSFFFEKAYCEYRLN 93 (652)
T ss_pred HHHHhccchH-HHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhh-hHHHHHHHHHHhcchhh--hcchhhHHHHHHHHHcc
Confidence 3567777888 9999988887762 3 334455555567788 89999997765543111 1111 23344 3678
Q ss_pred CHHHHHHHHhhCCcCCHhHHHHHHHHHHHcCChHHHHHHHhhCCCCCc-------------------------------c
Q 009066 85 NMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSV-------------------------------V 133 (545)
Q Consensus 85 ~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~-------------------------------~ 133 (545)
..++|+..+.-....+..+...-...+.+.|++++|.++|+.+...+. .
T Consensus 94 k~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~ 173 (652)
T KOG2376|consen 94 KLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPED 173 (652)
T ss_pred cHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcc
Confidence 888998888855455555666666778888889999888876532211 1
Q ss_pred cHHHHHHHhcchhhhccCChHHHHHHHHHHHhCC--------CC-----CCHH-HHHHHHHHHhccCcHHHHHHHHHHHH
Q 009066 134 AWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLG--------IR-----PNAS-SLSSVLLGCSHLSSLQLGKQVHQLVF 199 (545)
Q Consensus 134 ~~~~li~~~~~~g~~~~g~~~~A~~~~~~m~~~~--------~~-----pd~~-t~~~ll~~~~~~~~~~~a~~~~~~~~ 199 (545)
+|..+-...+. ++..|++.+|++++....+.+ .. -+.. .-.-+.-++-..|+.++|.+++...+
T Consensus 174 syel~yN~Ac~--~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i 251 (652)
T KOG2376|consen 174 SYELLYNTACI--LIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDII 251 (652)
T ss_pred hHHHHHHHHHH--HHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 23222211100 278899999999998882211 01 0001 11122334567899999999999988
Q ss_pred hCCCCCCcc----cHHHHHHHHHhc---------------------------------------------CCHHHHHHHH
Q 009066 200 KSPLCKDTT----ALTPLISMYCKC---------------------------------------------GDLEDACKLF 230 (545)
Q Consensus 200 ~~g~~~~~~----~~~~li~~y~~~---------------------------------------------g~~~~A~~~f 230 (545)
+... +|.. ..|.|+.+-... +..+.+.++-
T Consensus 252 ~~~~-~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~ 330 (652)
T KOG2376|consen 252 KRNP-ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELS 330 (652)
T ss_pred HhcC-CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 8763 3321 112222211110 1111111111
Q ss_pred HhccCCC-hhhHHHHHHHH--HHcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHccCcHHHHHHHHH--------
Q 009066 231 LEIQRKD-VVTWNAMISGY--AQHGKGEKALRLFDKMKDEGMKPDS--ITFVALLLACNHAGLVDLGIQYFD-------- 297 (545)
Q Consensus 231 ~~~~~~~-~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~-------- 297 (545)
...+... ...+.+++... .+...+.+|.+++...-+. .|.. ......+......|+++.|.+++.
T Consensus 331 a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~s 408 (652)
T KOG2376|consen 331 ASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKS 408 (652)
T ss_pred HhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhh
Confidence 1111111 12233333322 2222466777777766553 3333 344455667778999999999998
Q ss_pred HhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhC--------CCCCCH-hHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 009066 298 SMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM--------PFKPQP-AIFGTLLSACRVHKRLDLAEFAAMNLF 368 (545)
Q Consensus 298 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m--------~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~ 368 (545)
.+.+ +.-.+.+..+++.+|.+.++.+.|..++.+. ...+.. .+|.-+...-.++|+-++|..+++++.
T Consensus 409 s~~~---~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~ 485 (652)
T KOG2376|consen 409 SILE---AKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELV 485 (652)
T ss_pred hhhh---hccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHH
Confidence 4432 3344566678889999988877777666554 222222 344444455567899999999999999
Q ss_pred cCCCCCCchhHHHHHHHHHHcCCchHHHHHHHHh
Q 009066 369 NLNPANAAGCYVQLANIYAAMKKWDDVARIRLSM 402 (545)
Q Consensus 369 ~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 402 (545)
+.+|++.. +...++.+|++. +.+.|..+-+.+
T Consensus 486 k~n~~d~~-~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 486 KFNPNDTD-LLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HhCCchHH-HHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 99999988 999999999887 466666654433
No 72
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.06 E-value=7.4e-09 Score=93.64 Aligned_cols=196 Identities=13% Similarity=0.116 Sum_probs=164.5
Q ss_pred CcccHHHHHHHHHhcCCHHHHHHHHHhccC--CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHH-HHHHH
Q 009066 206 DTTALTPLISMYCKCGDLEDACKLFLEIQR--KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFV-ALLLA 282 (545)
Q Consensus 206 ~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~a 282 (545)
|-.--+.+...|.+.|.+.+|++.|+...+ +-+.+|-.+-..|.+..++..|+.+|.+-++ ..|-.+||. .....
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld--~fP~~VT~l~g~ARi 299 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLD--SFPFDVTYLLGQARI 299 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhh--cCCchhhhhhhhHHH
Confidence 333346789999999999999999998764 6888999999999999999999999999887 467777775 45577
Q ss_pred HHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhC---CCCCCHhHHHHHHHHHHhcCCHHH
Q 009066 283 CNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM---PFKPQPAIFGTLLSACRVHKRLDL 359 (545)
Q Consensus 283 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~li~~~~~~g~~~~ 359 (545)
+...++.++|.++++...+ ..+.+++...++...|.-.++.|-|+.+|+++ +. -+...|..+.-.|.-.++++.
T Consensus 300 ~eam~~~~~a~~lYk~vlk--~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~ 376 (478)
T KOG1129|consen 300 HEAMEQQEDALQLYKLVLK--LHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDL 376 (478)
T ss_pred HHHHHhHHHHHHHHHHHHh--cCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhh
Confidence 8888999999999999887 34667888889999999999999999999876 54 477889998888999999999
Q ss_pred HHHHHHHHhcC--CCCCCchhHHHHHHHHHHcCCchHHHHHHHHhhhCC
Q 009066 360 AEFAAMNLFNL--NPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENN 406 (545)
Q Consensus 360 A~~~~~~~~~~--~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 406 (545)
++..|++++.. +|+.....|..|..+....|++.-|.+.|+.....+
T Consensus 377 ~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d 425 (478)
T KOG1129|consen 377 VLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD 425 (478)
T ss_pred hHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC
Confidence 99999998764 344433389999999999999999999998776543
No 73
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.02 E-value=1.7e-06 Score=87.42 Aligned_cols=247 Identities=14% Similarity=0.075 Sum_probs=162.2
Q ss_pred HHHHHHHHHHHhCC-CCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHh
Q 009066 154 EDGLKLLRMMIGLG-IRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLE 232 (545)
Q Consensus 154 ~~A~~~~~~m~~~~-~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~ 232 (545)
.++++.+++.++.+ -.|+...|.++ -|+..++++.|.+..++.++.+-..+...|.-|.-.+.-.+++.+|+.+.+.
T Consensus 461 ~kslqale~av~~d~~dp~~if~lal--q~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~ 538 (799)
T KOG4162|consen 461 KKSLQALEEAVQFDPTDPLVIFYLAL--QYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDA 538 (799)
T ss_pred HHHHHHHHHHHhcCCCCchHHHHHHH--HHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 45666666666543 23333333332 3556667777777777777775566677777777777777777777777665
Q ss_pred ccCC--C---------------------hhhHHHHHHHHH-----------------------HcCChHHHHHHHHHHHH
Q 009066 233 IQRK--D---------------------VVTWNAMISGYA-----------------------QHGKGEKALRLFDKMKD 266 (545)
Q Consensus 233 ~~~~--~---------------------~~~~~~li~~~~-----------------------~~g~~~~A~~~~~~m~~ 266 (545)
.... + ..+...++..+- ..++..+|....+.+..
T Consensus 539 al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~ 618 (799)
T KOG4162|consen 539 ALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSS 618 (799)
T ss_pred HHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHH
Confidence 4321 0 111111111111 01112222222222110
Q ss_pred --------cC---------C--CCCH------HHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhH
Q 009066 267 --------EG---------M--KPDS------ITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGR 321 (545)
Q Consensus 267 --------~g---------~--~p~~------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 321 (545)
.| + .|+. ..+......+...+..++|...+.+..+ ..+-....|......+..
T Consensus 619 l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~ 696 (799)
T KOG4162|consen 619 LVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEV 696 (799)
T ss_pred HHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHH
Confidence 01 0 1221 1233444566777888888877777764 345567778888889999
Q ss_pred cCCHHHHHHHHHhC-CCCCC-HhHHHHHHHHHHhcCCHHHHHH--HHHHHhcCCCCCCchhHHHHHHHHHHcCCchHHHH
Q 009066 322 AGKLVEAVDLIKKM-PFKPQ-PAIFGTLLSACRVHKRLDLAEF--AAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVAR 397 (545)
Q Consensus 322 ~g~~~~A~~~~~~m-~~~p~-~~~~~~li~~~~~~g~~~~A~~--~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~ 397 (545)
.|..++|.+.|... -+.|+ +.+..++...+...|+...|.. ++..+++++|.+.. .|..|+.++-+.|+.++|..
T Consensus 697 ~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~e-aW~~LG~v~k~~Gd~~~Aae 775 (799)
T KOG4162|consen 697 KGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHE-AWYYLGEVFKKLGDSKQAAE 775 (799)
T ss_pred HHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHH-HHHHHHHHHHHccchHHHHH
Confidence 99999999988776 56675 5788999999999999999988 99999999999999 99999999999999999999
Q ss_pred HHHHhhhC
Q 009066 398 IRLSMKEN 405 (545)
Q Consensus 398 ~~~~m~~~ 405 (545)
.|....+.
T Consensus 776 cf~aa~qL 783 (799)
T KOG4162|consen 776 CFQAALQL 783 (799)
T ss_pred HHHHHHhh
Confidence 99987653
No 74
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=2.2e-06 Score=80.38 Aligned_cols=261 Identities=8% Similarity=-0.061 Sum_probs=133.8
Q ss_pred CcccHHHHHHHhcchhhhccCChHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHhccCcHHHHHHHHHHHHhCCCCCCccc
Q 009066 131 SVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSL-SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTA 209 (545)
Q Consensus 131 ~~~~~~~li~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~pd~~t~-~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 209 (545)
|+.....+...+ ...|+.++|+..|.+.+.. .|+..+- -.-.-.+...|+++....+...+.... ......
T Consensus 231 NvhLl~~lak~~-----~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~ 302 (564)
T KOG1174|consen 231 NEHLMMALGKCL-----YYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASH 302 (564)
T ss_pred cHHHHHHHhhhh-----hhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhh
Confidence 445555555666 6666666666666665532 2322210 011111234455555555444443321 011111
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhccCC---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 009066 210 LTPLISMYCKCGDLEDACKLFLEIQRK---DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHA 286 (545)
Q Consensus 210 ~~~li~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 286 (545)
|-.-........+++.|..+-++..+. ++..+-.-...+.+.|+.++|.-.|+..+... +-+...|..|+..|...
T Consensus 303 wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~ 381 (564)
T KOG1174|consen 303 WFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQ 381 (564)
T ss_pred hhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhh
Confidence 111122233345566666665555443 23333333345556666666666666665421 12445666666666666
Q ss_pred CcHHHHHHHHHHhHHhcCCCCCHHHHHHHH-HHHhH-cCCHHHHHHHHHhC-CCCCCH-hHHHHHHHHHHhcCCHHHHHH
Q 009066 287 GLVDLGIQYFDSMVNDYGIAAKPDHYTCMV-DLLGR-AGKLVEAVDLIKKM-PFKPQP-AIFGTLLSACRVHKRLDLAEF 362 (545)
Q Consensus 287 g~~~~a~~~~~~~~~~~~~~~~~~~~~~li-~~~~~-~g~~~~A~~~~~~m-~~~p~~-~~~~~li~~~~~~g~~~~A~~ 362 (545)
|.+.+|.-.-+...+ -++.+..+.+.+. ..+.- ..--++|.+++++. .++|+- ...+.+...|...|..+.++.
T Consensus 382 ~~~kEA~~~An~~~~--~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~ 459 (564)
T KOG1174|consen 382 KRFKEANALANWTIR--LFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIK 459 (564)
T ss_pred chHHHHHHHHHHHHH--HhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHH
Confidence 666666655555444 2334444443331 22211 12235566666654 445543 344555556666677777777
Q ss_pred HHHHHhcCCCCCCchhHHHHHHHHHHcCCchHHHHHHHHhhh
Q 009066 363 AAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKE 404 (545)
Q Consensus 363 ~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 404 (545)
++++.+...|+.. .++.|+..+...+.+.+|+..|.....
T Consensus 460 LLe~~L~~~~D~~--LH~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 460 LLEKHLIIFPDVN--LHNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred HHHHHHhhccccH--HHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 7777777666665 566777777777777777766665543
No 75
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.98 E-value=1.1e-08 Score=99.56 Aligned_cols=219 Identities=14% Similarity=0.102 Sum_probs=175.6
Q ss_pred HhccCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHH
Q 009066 182 CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR---KDVVTWNAMISGYAQHGKGEKAL 258 (545)
Q Consensus 182 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 258 (545)
+.+.|++.+|.-.|+..++.. |.+...|.-|.......++-..|+..+.+..+ .|....-+|.-.|...|.-.+|+
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 356788888988898888876 56788898899999988888888888888775 36677778888899999999999
Q ss_pred HHHHHHHHcCCC--------CCHHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHH
Q 009066 259 RLFDKMKDEGMK--------PDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVD 330 (545)
Q Consensus 259 ~~~~~m~~~g~~--------p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 330 (545)
..++.-+...++ ++..+-.. ........+....++|-.+....+..+|+.++.+|.-.|.-.|.+++|.+
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 999988664211 01000000 11222334455667777777665666899999999999999999999999
Q ss_pred HHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchHHHHHHHHhhh
Q 009066 331 LIKKM-PFKP-QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKE 404 (545)
Q Consensus 331 ~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 404 (545)
.|+.. ..+| |..+||-|...++...+.++|+..|.+++++.|+... +...|+-.|...|.+++|.+.|-....
T Consensus 452 cf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR-~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 452 CFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVR-VRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeee-eehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 99987 6677 5689999999999999999999999999999999988 999999999999999999998876654
No 76
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.96 E-value=3.4e-06 Score=83.45 Aligned_cols=363 Identities=10% Similarity=0.128 Sum_probs=241.1
Q ss_pred hHHHHHHHccCCCCChhhHHHHHHHHHcCCCCHHHHHHHHhcCC-----CCCeehHHHHHHHHHhCCCHHHHHHHHhhCC
Q 009066 23 LKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP-----IKDTASWNTMISGFVQKKNMAKARDLFLAMP 97 (545)
Q Consensus 23 ~~~A~~~f~~~~~~~~~~~~~li~~~~~~~g~~~~A~~~~~~m~-----~~d~~~~~~li~~~~~~g~~~~a~~~~~~~~ 97 (545)
++.+.....+|| ..|-.-+.....+ |++..-+..|++.. ......|...+......+-.+-+..+|++.+
T Consensus 91 ~er~lv~mHkmp----RIwl~Ylq~l~~Q-~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYL 165 (835)
T KOG2047|consen 91 FERCLVFMHKMP----RIWLDYLQFLIKQ-GLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYL 165 (835)
T ss_pred HHHHHHHHhcCC----HHHHHHHHHHHhc-chHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHH
Confidence 555555555664 4577777777788 99999999998765 2355789999999999999999999999999
Q ss_pred cCCHhHHHHHHHHHHHcCChHHHHHHHhhCCCC----------CcccHHHHHHHhcchhhhccCChHHHHHHHHHHHhCC
Q 009066 98 EKNSVSWSAMISGYIECGQLDKAVELFKVAPVK----------SVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLG 167 (545)
Q Consensus 98 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~----------~~~~~~~li~~~~~~g~~~~g~~~~A~~~~~~m~~~~ 167 (545)
.-++..-+..|..+++.+++++|.+.+..+... +-..|+-+-...+++. ..+..-....+++.+..
T Consensus 166 k~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p--~~~~slnvdaiiR~gi~-- 241 (835)
T KOG2047|consen 166 KVAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNP--DKVQSLNVDAIIRGGIR-- 241 (835)
T ss_pred hcCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCc--chhcccCHHHHHHhhcc--
Confidence 888888999999999999999999998776532 3356766665552221 11111222334555443
Q ss_pred CCCCH--HHHHHHHHHHhccCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcC----------------------CH
Q 009066 168 IRPNA--SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCG----------------------DL 223 (545)
Q Consensus 168 ~~pd~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g----------------------~~ 223 (545)
.-+|. ..|.+|...|.+.|.++.|+.+|.+.+..- ..+.-++.+-+.|+.-. ++
T Consensus 242 rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl 319 (835)
T KOG2047|consen 242 RFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDL 319 (835)
T ss_pred cCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhH
Confidence 24554 368889999999999999999999887652 22333444444444321 12
Q ss_pred HHHHHHHHhccCC---------------ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC------HHHHHHHHHH
Q 009066 224 EDACKLFLEIQRK---------------DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPD------SITFVALLLA 282 (545)
Q Consensus 224 ~~A~~~f~~~~~~---------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~------~~t~~~ll~a 282 (545)
+-...-|+.+..+ ++..|..-... ..|+..+-...|.+..+. +.|- ...|..+...
T Consensus 320 ~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~fakl 396 (835)
T KOG2047|consen 320 ELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKL 396 (835)
T ss_pred HHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHH
Confidence 3333344444321 34455544443 357778888888888764 4443 2357777888
Q ss_pred HHccCcHHHHHHHHHHhHHhcCCCC---CHHHHHHHHHHHhHcCCHHHHHHHHHhC---CCC-----------------C
Q 009066 283 CNHAGLVDLGIQYFDSMVNDYGIAA---KPDHYTCMVDLLGRAGKLVEAVDLIKKM---PFK-----------------P 339 (545)
Q Consensus 283 ~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~-----------------p 339 (545)
|-..|+++.|+.+|++..+. ..+. -..+|..-.++=.+..+++.|+++++.. |-. .
T Consensus 397 Ye~~~~l~~aRvifeka~~V-~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhr 475 (835)
T KOG2047|consen 397 YENNGDLDDARVIFEKATKV-PYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHR 475 (835)
T ss_pred HHhcCcHHHHHHHHHHhhcC-CccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHH
Confidence 88999999999999887653 2221 1456777777778888999999988876 211 1
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchHHHHHHHH
Q 009066 340 QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLS 401 (545)
Q Consensus 340 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 401 (545)
+..+|...+...-..|-++.-..++++++++.--.+. .....+..+....-++++.+++++
T Consensus 476 SlkiWs~y~DleEs~gtfestk~vYdriidLriaTPq-ii~NyAmfLEeh~yfeesFk~YEr 536 (835)
T KOG2047|consen 476 SLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQ-IIINYAMFLEEHKYFEESFKAYER 536 (835)
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHH-HHHHHHHHHHhhHHHHHHHHHHHc
Confidence 2345666666666777777888888888776543333 333444444455566666666653
No 77
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.94 E-value=1.5e-07 Score=81.68 Aligned_cols=163 Identities=14% Similarity=0.122 Sum_probs=119.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHh
Q 009066 241 WNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLG 320 (545)
Q Consensus 241 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 320 (545)
...+.-+|.+.|+...|..-+++.++.. +-+..++..+...|.+.|..+.|.+.|+...+ --+.+..+.|...--++
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls--l~p~~GdVLNNYG~FLC 114 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALS--LAPNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHh--cCCCccchhhhhhHHHH
Confidence 4445667777777777777777777642 22345666666777777777777777777764 22444567777777777
Q ss_pred HcCCHHHHHHHHHhCCCCC----CHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchHHH
Q 009066 321 RAGKLVEAVDLIKKMPFKP----QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVA 396 (545)
Q Consensus 321 ~~g~~~~A~~~~~~m~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~ 396 (545)
..|++++|...|++.-..| -..+|..+.-...+.|+.+.|+..+++.++.+|+.+. +...+.....+.|++-.|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~-~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPP-ALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCCh-HHHHHHHHHHhcccchHHH
Confidence 7888888888877762222 2357777877778888999999999999999998887 8888888888999999998
Q ss_pred HHHHHhhhCCC
Q 009066 397 RIRLSMKENNV 407 (545)
Q Consensus 397 ~~~~~m~~~~~ 407 (545)
..++....++.
T Consensus 194 ~~~~~~~~~~~ 204 (250)
T COG3063 194 LYLERYQQRGG 204 (250)
T ss_pred HHHHHHHhccc
Confidence 88887766554
No 78
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.86 E-value=1.1e-06 Score=76.32 Aligned_cols=195 Identities=16% Similarity=0.076 Sum_probs=103.0
Q ss_pred HHHHHhccCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHHcCCh
Q 009066 178 VLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR---KDVVTWNAMISGYAQHGKG 254 (545)
Q Consensus 178 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~ 254 (545)
+.-.|.+.|+...|+.-++.+++.. +.+..++..+...|.+.|+.+.|.+.|++... .+....|....-+|.+|++
T Consensus 41 Lal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~ 119 (250)
T COG3063 41 LALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRP 119 (250)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCCh
Confidence 3334455555555555555555543 33344455555555555555555555555432 2444555555555666666
Q ss_pred HHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHH
Q 009066 255 EKALRLFDKMKDEGMKP-DSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIK 333 (545)
Q Consensus 255 ~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 333 (545)
++|...|++......-| -..||..+.-+..+.|+.+.|...|++..+ -.+..+.....+.+...+.|++..|..+++
T Consensus 120 ~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~--~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~ 197 (250)
T COG3063 120 EEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE--LDPQFPPALLELARLHYKAGDYAPARLYLE 197 (250)
T ss_pred HHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH--hCcCCChHHHHHHHHHHhcccchHHHHHHH
Confidence 66666666655432111 123455555445556666666666665554 223334455556666666666666666655
Q ss_pred hC--CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC
Q 009066 334 KM--PFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANA 375 (545)
Q Consensus 334 ~m--~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~ 375 (545)
.. ...++..+.--.|..-...||.+.+-+.=.++....|...
T Consensus 198 ~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~ 241 (250)
T COG3063 198 RYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSE 241 (250)
T ss_pred HHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcH
Confidence 54 2224554444455555556666666655555555555543
No 79
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.85 E-value=1.3e-06 Score=88.56 Aligned_cols=95 Identities=14% Similarity=0.112 Sum_probs=61.3
Q ss_pred HHHHHHHHhHcCCHHHHHHHHHhC-CCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHc
Q 009066 312 YTCMVDLLGRAGKLVEAVDLIKKM-PFKPQ-PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAM 389 (545)
Q Consensus 312 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~ 389 (545)
+..+...|...|++++|++++++. ...|+ +..|..-...+...|++++|...++.+..+++.+-. .-.-.+..+.++
T Consensus 197 ~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRy-iNsK~aKy~LRa 275 (517)
T PF12569_consen 197 LYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRY-INSKCAKYLLRA 275 (517)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHH-HHHHHHHHHHHC
Confidence 345566666777777777777655 33454 345566666677777777777777777777776654 444555666677
Q ss_pred CCchHHHHHHHHhhhCCC
Q 009066 390 KKWDDVARIRLSMKENNV 407 (545)
Q Consensus 390 g~~~~a~~~~~~m~~~~~ 407 (545)
|+.++|.++.....+.+.
T Consensus 276 ~~~e~A~~~~~~Ftr~~~ 293 (517)
T PF12569_consen 276 GRIEEAEKTASLFTREDV 293 (517)
T ss_pred CCHHHHHHHHHhhcCCCC
Confidence 777777777766655544
No 80
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.85 E-value=4.7e-06 Score=76.39 Aligned_cols=304 Identities=12% Similarity=0.085 Sum_probs=178.2
Q ss_pred HHHHHHcCCCCHHHHHHHHhcCCCCCeehHHHHH---HHHHhCCCHHHHHHHHhhCCcCCHhHHHH---HHHHHHHcCCh
Q 009066 44 MLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMI---SGFVQKKNMAKARDLFLAMPEKNSVSWSA---MISGYIECGQL 117 (545)
Q Consensus 44 li~~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li---~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---li~~~~~~g~~ 117 (545)
+-..+..+ |++.+|+.-|....+-|+..|.++. ..|...|+-..|+.-+.+.++..+..+.+ -...+.+.|.+
T Consensus 44 lGk~lla~-~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gel 122 (504)
T KOG0624|consen 44 LGKELLAR-GQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGEL 122 (504)
T ss_pred HHHHHHHh-hhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccH
Confidence 44455555 7777777777777766665555554 35666777777777666666432222222 23456677777
Q ss_pred HHHHHHHhhCCCCCcccHHHHHHHhcchhhhccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 009066 118 DKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQL 197 (545)
Q Consensus 118 ~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~ 197 (545)
+.|..=|+.+.+.++ .+|...+|.+-+....+ .......+..+...|+...+.+....
T Consensus 123 e~A~~DF~~vl~~~~----------------s~~~~~eaqskl~~~~e------~~~l~~ql~s~~~~GD~~~ai~~i~~ 180 (504)
T KOG0624|consen 123 EQAEADFDQVLQHEP----------------SNGLVLEAQSKLALIQE------HWVLVQQLKSASGSGDCQNAIEMITH 180 (504)
T ss_pred HHHHHHHHHHHhcCC----------------CcchhHHHHHHHHhHHH------HHHHHHHHHHHhcCCchhhHHHHHHH
Confidence 777777766554332 11111111111110000 11222334445567888888888888
Q ss_pred HHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhcc---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH
Q 009066 198 VFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ---RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSI 274 (545)
Q Consensus 198 ~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 274 (545)
+++.. +.|...+..-..+|...|++..|+.=+.... ..+....--+-..+...|+.+.++...++-++ +.||..
T Consensus 181 llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK 257 (504)
T KOG0624|consen 181 LLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHK 257 (504)
T ss_pred HHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchh
Confidence 88765 5677788888888888888888876665443 45666777777788888888888888888876 456653
Q ss_pred HH----HHH---H------HHHHccCcHHHHHHHHHHhHHhcCCCCC-----HHHHHHHHHHHhHcCCHHHHHHHHHhC-
Q 009066 275 TF----VAL---L------LACNHAGLVDLGIQYFDSMVNDYGIAAK-----PDHYTCMVDLLGRAGKLVEAVDLIKKM- 335 (545)
Q Consensus 275 t~----~~l---l------~a~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m- 335 (545)
.. ..| . ......+.+.++.+-.+...+. .|. ...+..+-.+|...|++.+|+..-.+.
T Consensus 258 ~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL 334 (504)
T KOG0624|consen 258 LCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN---EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVL 334 (504)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc---CCcccceeeeeeheeeecccccCCHHHHHHHHHHHH
Confidence 21 111 0 1122334455555555554432 332 112334445556667777777665554
Q ss_pred CCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCc
Q 009066 336 PFKPQ-PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAA 376 (545)
Q Consensus 336 ~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 376 (545)
.+.|| +.++---..+|.....++.|+.-|+++.+.+|++..
T Consensus 335 ~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~ 376 (504)
T KOG0624|consen 335 DIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTR 376 (504)
T ss_pred hcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHH
Confidence 44454 555555566666667777777777777777776653
No 81
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.84 E-value=9.9e-08 Score=89.90 Aligned_cols=240 Identities=13% Similarity=0.065 Sum_probs=144.1
Q ss_pred ccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHH
Q 009066 149 ENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK 228 (545)
Q Consensus 149 ~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~ 228 (545)
-.|.+..++.-.. .....-..+..+...+.+++...|..+.+ ...+.+.. .|.......+...+...++-+.+..
T Consensus 13 y~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~v---l~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~ 87 (290)
T PF04733_consen 13 YLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSV---LSEIKKSS-SPELQAVRLLAEYLSSPSDKESALE 87 (290)
T ss_dssp CTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHH---HHHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHH
T ss_pred HhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHH---HHHhccCC-ChhHHHHHHHHHHHhCccchHHHHH
Confidence 4566776665444 22211112233444556666666665543 23333332 4444444434333333244555555
Q ss_pred HHHhccC-C----ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHhHHhc
Q 009066 229 LFLEIQR-K----DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDY 303 (545)
Q Consensus 229 ~f~~~~~-~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 303 (545)
-+++... + +..........+...|++++|++++.+- .+.......+..+.+.++++.|.+.++.|.+
T Consensus 88 ~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~-- 159 (290)
T PF04733_consen 88 ELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ-- 159 (290)
T ss_dssp HHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC--
T ss_pred HHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh--
Confidence 5544432 2 1111122223445568888888887642 2445556667788888899999888888863
Q ss_pred CCCCCHHHHHHHHHHH----hHcCCHHHHHHHHHhC--CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCch
Q 009066 304 GIAAKPDHYTCMVDLL----GRAGKLVEAVDLIKKM--PFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAG 377 (545)
Q Consensus 304 ~~~~~~~~~~~li~~~----~~~g~~~~A~~~~~~m--~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 377 (545)
+..|. +...|..++ .-.+.+.+|..+|+++ ...+++.+.+.+..+....|++++|+.+++++++.+|+++.
T Consensus 160 -~~eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d- 236 (290)
T PF04733_consen 160 -IDEDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPD- 236 (290)
T ss_dssp -CSCCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHH-
T ss_pred -cCCcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHH-
Confidence 33342 333333333 3334689999999988 44467888899999999999999999999999999999988
Q ss_pred hHHHHHHHHHHcCCc-hHHHHHHHHhhh
Q 009066 378 CYVQLANIYAAMKKW-DDVARIRLSMKE 404 (545)
Q Consensus 378 ~~~~l~~~~~~~g~~-~~a~~~~~~m~~ 404 (545)
+...++-+....|+. +.+.+.+.+++.
T Consensus 237 ~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 237 TLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 888999999999988 567788888765
No 82
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.81 E-value=9.5e-06 Score=80.25 Aligned_cols=296 Identities=12% Similarity=-0.024 Sum_probs=162.3
Q ss_pred HhHHHHHHHHHHHcCChHHHHHHHhhCC---CCCcccH---HHHHHHhcchhhhccCChHHHHHHHHHHHhCCCCCCHHH
Q 009066 101 SVSWSAMISGYIECGQLDKAVELFKVAP---VKSVVAW---TAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASS 174 (545)
Q Consensus 101 ~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~---~~li~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~pd~~t 174 (545)
...+..+...|...|+.+.+.+.+.... .++...+ ......+ ...|++++|.+.+++..+.. +.|...
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~-----~~~g~~~~A~~~~~~~l~~~-P~~~~a 79 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSA-----WIAGDLPKALALLEQLLDDY-PRDLLA 79 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHH-----HHcCCHHHHHHHHHHHHHHC-CCcHHH
Confidence 3455555566666666666555554322 1122111 1112233 56778888888888777652 223333
Q ss_pred HHHHHHHHh----ccCcHHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHH
Q 009066 175 LSSVLLGCS----HLSSLQLGKQVHQLVFKSPLCKD-TTALTPLISMYCKCGDLEDACKLFLEIQR---KDVVTWNAMIS 246 (545)
Q Consensus 175 ~~~ll~~~~----~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~ 246 (545)
+.. ...+. ..+..+.+.+.+.. ..+..|+ ......+...+...|++++|...+++..+ .+...+..+..
T Consensus 80 ~~~-~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~ 156 (355)
T cd05804 80 LKL-HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAH 156 (355)
T ss_pred HHH-hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHH
Confidence 332 11222 23444444444443 1111222 23334556677788888888888887764 34566777777
Q ss_pred HHHHcCChHHHHHHHHHHHHcCC-CCCH--HHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHH-H--HHHHHHh
Q 009066 247 GYAQHGKGEKALRLFDKMKDEGM-KPDS--ITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY-T--CMVDLLG 320 (545)
Q Consensus 247 ~~~~~g~~~~A~~~~~~m~~~g~-~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~--~li~~~~ 320 (545)
.|...|++++|+..+++...... .|+. ..+..+...+...|+.++|..+++.........+..... + .++..+.
T Consensus 157 i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 236 (355)
T cd05804 157 VLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLE 236 (355)
T ss_pred HHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHH
Confidence 88888888888888888776422 1222 234456667778888888888887765321111111111 1 2233333
Q ss_pred HcCCHHHHHHH---HHhC-CCCC---CHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCC-C--------CCCchhHHHHHH
Q 009066 321 RAGKLVEAVDL---IKKM-PFKP---QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLN-P--------ANAAGCYVQLAN 384 (545)
Q Consensus 321 ~~g~~~~A~~~---~~~m-~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-p--------~~~~~~~~~l~~ 384 (545)
..|....+.+. .... +..| ..........++...|+.+.|..+++.+.... . .... .....+.
T Consensus 237 ~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~-~~~l~A~ 315 (355)
T cd05804 237 LAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVG-LPLAEAL 315 (355)
T ss_pred hcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhh-HHHHHHH
Confidence 44433222222 1111 1101 11222345566778888999988888775421 1 1122 4556677
Q ss_pred HHHHcCCchHHHHHHHHhhhCC
Q 009066 385 IYAAMKKWDDVARIRLSMKENN 406 (545)
Q Consensus 385 ~~~~~g~~~~a~~~~~~m~~~~ 406 (545)
++...|++++|.+.+......+
T Consensus 316 ~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 316 YAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHHHH
Confidence 7889999999999998877643
No 83
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.80 E-value=6.9e-06 Score=83.27 Aligned_cols=301 Identities=12% Similarity=0.077 Sum_probs=136.5
Q ss_pred HHHHhCCCHHHHHHHHhhCCc---CCHhHHHHHHHHHHHcCChHHHHHHHhhCCCCCc--ccHHHHHHHhc-chhhhccC
Q 009066 78 SGFVQKKNMAKARDLFLAMPE---KNSVSWSAMISGYIECGQLDKAVELFKVAPVKSV--VAWTAMISGYM-KFGYVENS 151 (545)
Q Consensus 78 ~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~--~~~~~li~~~~-~~g~~~~g 151 (545)
..+...|++++|++.+..-.. ....+.......|.+.|+.++|..++..+..+|+ ..|-..+..+. -.......
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~ 91 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDE 91 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccc
Confidence 445666777777777665432 2234555666677777777777777776664333 23322222220 00001112
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCc-HHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHH
Q 009066 152 WAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSS-LQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 230 (545)
Q Consensus 152 ~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~~-~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f 230 (545)
..+...++|+++...- |.......+.-.+..... -..+..+...+++.|+|+ +++.|-..|....+.+-..+++
T Consensus 92 ~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~ 166 (517)
T PF12569_consen 92 DVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESLV 166 (517)
T ss_pred cHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHHH
Confidence 3455566666665442 333333222222222111 234445555556666543 4455555555433333333333
Q ss_pred HhccCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCC
Q 009066 231 LEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDS--ITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK 308 (545)
Q Consensus 231 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~ 308 (545)
...... +...+.+...- ....-.|.. .++..+...|...|++++|.++++..+.. .|+
T Consensus 167 ~~~~~~-----------l~~~~~~~~~~------~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h---tPt 226 (517)
T PF12569_consen 167 EEYVNS-----------LESNGSFSNGD------DEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH---TPT 226 (517)
T ss_pred HHHHHh-----------hcccCCCCCcc------ccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc---CCC
Confidence 322100 00000000000 000011222 23333444555556666666666555542 333
Q ss_pred -HHHHHHHHHHHhHcCCHHHHHHHHHhC-CCC-CCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCC--CCCCc----h--
Q 009066 309 -PDHYTCMVDLLGRAGKLVEAVDLIKKM-PFK-PQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLN--PANAA----G-- 377 (545)
Q Consensus 309 -~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--p~~~~----~-- 377 (545)
++.|..-...|-+.|++++|.+.++.. ... .|..+-+-....+.+.|++++|+..+......+ |.... .
T Consensus 227 ~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~W 306 (517)
T PF12569_consen 227 LVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMW 306 (517)
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHH
Confidence 555555556666666666666555544 111 233344444445555666666666555554332 11110 0
Q ss_pred hHHHHHHHHHHcCCchHHHHHHHHhh
Q 009066 378 CYVQLANIYAAMKKWDDVARIRLSMK 403 (545)
Q Consensus 378 ~~~~l~~~~~~~g~~~~a~~~~~~m~ 403 (545)
.....+.+|.+.|++..|++-|..+.
T Consensus 307 f~~e~a~a~~r~~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 307 FETECAEAYLRQGDYGLALKRFHAVL 332 (517)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 11244566677777777666655544
No 84
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.74 E-value=2.1e-05 Score=77.74 Aligned_cols=191 Identities=12% Similarity=0.080 Sum_probs=99.8
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhccCC-----Ch--hhHHHHHHHHH
Q 009066 177 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK-----DV--VTWNAMISGYA 249 (545)
Q Consensus 177 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~-----~~--~~~~~li~~~~ 249 (545)
.+...+...|++++|.+.++...+.. +.+...+..+...|...|++++|...+++..+. +. ..|..+...+.
T Consensus 119 ~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~ 197 (355)
T cd05804 119 MLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYL 197 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHH
Confidence 34445566667777777777666654 334555666677777777777777777665531 11 23445666777
Q ss_pred HcCChHHHHHHHHHHHHcCC-CCCHHHH-H--HHHHHHHccCcHHHHHHH--HHHhHHhcCCC--CCHHHHHHHHHHHhH
Q 009066 250 QHGKGEKALRLFDKMKDEGM-KPDSITF-V--ALLLACNHAGLVDLGIQY--FDSMVNDYGIA--AKPDHYTCMVDLLGR 321 (545)
Q Consensus 250 ~~g~~~~A~~~~~~m~~~g~-~p~~~t~-~--~ll~a~~~~g~~~~a~~~--~~~~~~~~~~~--~~~~~~~~li~~~~~ 321 (545)
..|++++|+.+|++...... .+..... . .++.-+...|..+.+.++ ....... ..+ .........+.++..
T Consensus 198 ~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~ 276 (355)
T cd05804 198 ERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAW-HFPDHGLAFNDLHAALALAG 276 (355)
T ss_pred HCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHh-hcCcccchHHHHHHHHHHhc
Confidence 77777777777777653221 1111111 1 222222333333322222 1111111 101 111122245566677
Q ss_pred cCCHHHHHHHHHhCC--CCC---C------HhHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 009066 322 AGKLVEAVDLIKKMP--FKP---Q------PAIFGTLLSACRVHKRLDLAEFAAMNLFN 369 (545)
Q Consensus 322 ~g~~~~A~~~~~~m~--~~p---~------~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 369 (545)
.|+.++|..+++.+. ... . +...-...-++...|+.++|...+...+.
T Consensus 277 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 277 AGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRD 335 (355)
T ss_pred CCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 788888888877661 111 1 11111222345578888888888877754
No 85
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.73 E-value=5.6e-06 Score=76.21 Aligned_cols=77 Identities=13% Similarity=0.101 Sum_probs=49.9
Q ss_pred CCCChHHHHHHHccCCCC---ChhhHHHHHH-HHHcCCCCHHHHHHHHhcCC---CCCeehHHHHHHHHHhCCCHHHHHH
Q 009066 19 QRGKLKDAQELFDKIPQP---DVVSYNIMLS-CILLNSDDVVAAFDFFQRLP---IKDTASWNTMISGFVQKKNMAKARD 91 (545)
Q Consensus 19 ~g~~~~~A~~~f~~~~~~---~~~~~~~li~-~~~~~~g~~~~A~~~~~~m~---~~d~~~~~~li~~~~~~g~~~~a~~ 91 (545)
..+ +..|+.+++.-..- ...+.+..|. .+.+- |++++|...|..+. .++...|..|.-.+.-.|.+.+|.+
T Consensus 35 ~rD-ytGAislLefk~~~~~EEE~~~~lWia~C~fhL-gdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~ 112 (557)
T KOG3785|consen 35 NRD-YTGAISLLEFKLNLDREEEDSLQLWIAHCYFHL-GDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKS 112 (557)
T ss_pred ccc-chhHHHHHHHhhccchhhhHHHHHHHHHHHHhh-ccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHH
Confidence 345 88888877655421 1123333344 44555 89999998888765 4456667777766667788888888
Q ss_pred HHhhCC
Q 009066 92 LFLAMP 97 (545)
Q Consensus 92 ~~~~~~ 97 (545)
+-....
T Consensus 113 ~~~ka~ 118 (557)
T KOG3785|consen 113 IAEKAP 118 (557)
T ss_pred HHhhCC
Confidence 877654
No 86
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.73 E-value=5.3e-07 Score=84.98 Aligned_cols=154 Identities=16% Similarity=0.174 Sum_probs=92.7
Q ss_pred HHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----ccCcHH
Q 009066 215 SMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN----HAGLVD 290 (545)
Q Consensus 215 ~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~----~~g~~~ 290 (545)
.+|...|++++|.++++.. .+.......+..|.+.++++.|.+.++.|.+. ..| .+...+..++. ....+.
T Consensus 110 ~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD-~~l~qLa~awv~l~~g~e~~~ 184 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DED-SILTQLAEAWVNLATGGEKYQ 184 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCC-HHHHHHHHHHHHHHHTTTCCC
T ss_pred HHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc-HHHHHHHHHHHHHHhCchhHH
Confidence 4455566667666666554 34555555666777777777777777777653 223 33333333332 223567
Q ss_pred HHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCH-HHHHHHHHHH
Q 009066 291 LGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKP-QPAIFGTLLSACRVHKRL-DLAEFAAMNL 367 (545)
Q Consensus 291 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~-~~A~~~~~~~ 367 (545)
+|..+|+++.. ...+++.+.+.+.-++...|++++|.+++.+. ...| +..+...++......|+. +.+.+...++
T Consensus 185 ~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL 262 (290)
T PF04733_consen 185 DAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQL 262 (290)
T ss_dssp HHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHC
T ss_pred HHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 77777777765 34566677777777777777777777777664 3233 445666677766677766 5667777777
Q ss_pred hcCCCCCC
Q 009066 368 FNLNPANA 375 (545)
Q Consensus 368 ~~~~p~~~ 375 (545)
....|+.+
T Consensus 263 ~~~~p~h~ 270 (290)
T PF04733_consen 263 KQSNPNHP 270 (290)
T ss_dssp HHHTTTSH
T ss_pred HHhCCCCh
Confidence 77777764
No 87
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.72 E-value=4.2e-05 Score=76.15 Aligned_cols=388 Identities=12% Similarity=0.101 Sum_probs=223.4
Q ss_pred CCCccHHHHHHHHHHhCCCChHHHH----HHHccCC-CCChhhHHHHHHHHHcCCCCHHHHHHHHhcCC---CCCeehHH
Q 009066 3 VKTTVNWNSVLAGFAKQRGKLKDAQ----ELFDKIP-QPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP---IKDTASWN 74 (545)
Q Consensus 3 ~~~~~~~~~li~~~~~~g~~~~~A~----~~f~~~~-~~~~~~~~~li~~~~~~~g~~~~A~~~~~~m~---~~d~~~~~ 74 (545)
+.....+-.++..|-. ++ +.... .++..-+ .++..+.--+. +..- |+-++|......-. ..+.+.|.
T Consensus 5 ~KE~~lF~~~lk~yE~-kQ-YkkgLK~~~~iL~k~~eHgeslAmkGL~--L~~l-g~~~ea~~~vr~glr~d~~S~vCwH 79 (700)
T KOG1156|consen 5 PKENALFRRALKCYET-KQ-YKKGLKLIKQILKKFPEHGESLAMKGLT--LNCL-GKKEEAYELVRLGLRNDLKSHVCWH 79 (700)
T ss_pred hHHHHHHHHHHHHHHH-HH-HHhHHHHHHHHHHhCCccchhHHhccch--hhcc-cchHHHHHHHHHHhccCcccchhHH
Confidence 3444556666666654 23 44444 4444433 34443322111 2333 89999999887766 34568899
Q ss_pred HHHHHHHhCCCHHHHHHHHhhCC---cCCHhHHHHHHHHHHHcCChHHHHHHHhhCC---CCCcccHHHHHHHhcchhhh
Q 009066 75 TMISGFVQKKNMAKARDLFLAMP---EKNSVSWSAMISGYIECGQLDKAVELFKVAP---VKSVVAWTAMISGYMKFGYV 148 (545)
Q Consensus 75 ~li~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~ 148 (545)
.+.-.+....++++|++.|.... ..|...+.-|.-.-++.|+++.....-.+.. ......|..+..++ .
T Consensus 80 v~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~-----~ 154 (700)
T KOG1156|consen 80 VLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQ-----H 154 (700)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHH-----H
Confidence 99999999999999999999876 3466777777777778888877766555443 33557899998888 8
Q ss_pred ccCChHHHHHHHHHHHhCC-CCCCHHHHHHHHH------HHhccCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcC
Q 009066 149 ENSWAEDGLKLLRMMIGLG-IRPNASSLSSVLL------GCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCG 221 (545)
Q Consensus 149 ~~g~~~~A~~~~~~m~~~~-~~pd~~t~~~ll~------~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g 221 (545)
-.|+...|..++++..+.. -.|+...+.-... .....|.++.|.+-....... +......-..-.+.+.+.+
T Consensus 155 L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~ 233 (700)
T KOG1156|consen 155 LLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLG 233 (700)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHh
Confidence 8999999999999887654 2456555543332 234567777776665544332 1122233445677888999
Q ss_pred CHHHHHHHHHhccCC--ChhhHHHH-HHHHHHcCChHHHH-HHHHHHHH-------------------------------
Q 009066 222 DLEDACKLFLEIQRK--DVVTWNAM-ISGYAQHGKGEKAL-RLFDKMKD------------------------------- 266 (545)
Q Consensus 222 ~~~~A~~~f~~~~~~--~~~~~~~l-i~~~~~~g~~~~A~-~~~~~m~~------------------------------- 266 (545)
++++|..++..+..+ |-.-|+-. ..++.+-.+..+++ .+|....+
T Consensus 234 ~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~ 313 (700)
T KOG1156|consen 234 QLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRP 313 (700)
T ss_pred hHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHH
Confidence 999999999988764 44444333 33332222333333 44444332
Q ss_pred ---cCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHhHHhc-C------------CCCCHHH--HHHHHHHHhHcCCHHHH
Q 009066 267 ---EGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDY-G------------IAAKPDH--YTCMVDLLGRAGKLVEA 328 (545)
Q Consensus 267 ---~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-~------------~~~~~~~--~~~li~~~~~~g~~~~A 328 (545)
.|++| +|..+.+.+-.....+--.++...+.... | -+|.... +-.++..|-+.|+++.|
T Consensus 314 ~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A 390 (700)
T KOG1156|consen 314 LLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVA 390 (700)
T ss_pred HhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHH
Confidence 23222 12222222221111111111111111000 1 0333333 33566666777777777
Q ss_pred HHHHHhC-CCCCCH-hHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHH-HHHHHHHHcCCchHHHHHHHHhhhC
Q 009066 329 VDLIKKM-PFKPQP-AIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYV-QLANIYAAMKKWDDVARIRLSMKEN 405 (545)
Q Consensus 329 ~~~~~~m-~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~-~l~~~~~~~g~~~~a~~~~~~m~~~ 405 (545)
...++.. +-.|+. ..|-.-...+...|++++|...++++.+++-.+. ..+ --+.-..++.+.++|.++.....+.
T Consensus 391 ~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR--~INsKcAKYmLrAn~i~eA~~~~skFTr~ 468 (700)
T KOG1156|consen 391 LEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADR--AINSKCAKYMLRANEIEEAEEVLSKFTRE 468 (700)
T ss_pred HHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhH--HHHHHHHHHHHHccccHHHHHHHHHhhhc
Confidence 7777665 333443 2343444556666777777777777777665543 222 3444445666777777776666555
Q ss_pred C
Q 009066 406 N 406 (545)
Q Consensus 406 ~ 406 (545)
|
T Consensus 469 ~ 469 (700)
T KOG1156|consen 469 G 469 (700)
T ss_pred c
Confidence 4
No 88
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.71 E-value=2.3e-05 Score=70.62 Aligned_cols=379 Identities=13% Similarity=0.096 Sum_probs=231.0
Q ss_pred HHHHHHHHHhCCCChHHHHHHHccCCCC---ChhhHHHHHHHHHcCCCCHHHHHHHHhcCC--CCCeehHHH-HHHHHHh
Q 009066 9 WNSVLAGFAKQRGKLKDAQELFDKIPQP---DVVSYNIMLSCILLNSDDVVAAFDFFQRLP--IKDTASWNT-MISGFVQ 82 (545)
Q Consensus 9 ~~~li~~~~~~g~~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~~g~~~~A~~~~~~m~--~~d~~~~~~-li~~~~~ 82 (545)
+++.+....+..+ +++|.+++..-.++ +......+--.|... .++..|-..|+++. .|...-|.. -...+-+
T Consensus 13 ftaviy~lI~d~r-y~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~-Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~ 90 (459)
T KOG4340|consen 13 FTAVVYRLIRDAR-YADAIQLLGSELERSPRSRAGLSLLGYCYYRL-QEFALAAECYEQLGQLHPELEQYRLYQAQSLYK 90 (459)
T ss_pred hHHHHHHHHHHhh-HHHHHHHHHHHHhcCccchHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHH
Confidence 3455555667777 99999998776643 344455566677777 89999999999886 343333322 1345667
Q ss_pred CCCHHHHHHHHhhCCcCC-HhHHHHHHH--HHHHcCChHHHHHHHhhCCC-CCcccHHHHHHHhcchhhhccCChHHHHH
Q 009066 83 KKNMAKARDLFLAMPEKN-SVSWSAMIS--GYIECGQLDKAVELFKVAPV-KSVVAWTAMISGYMKFGYVENSWAEDGLK 158 (545)
Q Consensus 83 ~g~~~~a~~~~~~~~~~~-~~~~~~li~--~~~~~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~~g~~~~g~~~~A~~ 158 (545)
.+.+..|+.+...|.+.+ ...-..-+. .....+++..++.+.++.+. .+..+-+...... .+.|++++|++
T Consensus 91 A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCll-----ykegqyEaAvq 165 (459)
T KOG4340|consen 91 ACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLL-----YKEGQYEAAVQ 165 (459)
T ss_pred hcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchhee-----eccccHHHHHH
Confidence 889999999999888642 221111122 23357889999999999984 5555555555555 88999999999
Q ss_pred HHHHHHhC-CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhCCCC-------------CCcc--------cHHHHH--
Q 009066 159 LLRMMIGL-GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLC-------------KDTT--------ALTPLI-- 214 (545)
Q Consensus 159 ~~~~m~~~-~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~-------------~~~~--------~~~~li-- 214 (545)
-|+...+- |..| ...|+..+ +..+.++.+.|.....+++++|+. +|+. .-++++
T Consensus 166 kFqaAlqvsGyqp-llAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eA 243 (459)
T KOG4340|consen 166 KFQAALQVSGYQP-LLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEA 243 (459)
T ss_pred HHHHHHhhcCCCc-hhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHH
Confidence 99998875 4444 56776665 455678999999999999887753 1211 112233
Q ss_pred -----HHHHhcCCHHHHHHHHHhccCC-----ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 009066 215 -----SMYCKCGDLEDACKLFLEIQRK-----DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 284 (545)
Q Consensus 215 -----~~y~~~g~~~~A~~~f~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 284 (545)
..+.+.|+.+.|.+.+-.|+.+ |++|...+.-.-. .+++.+..+-+.-++..++- ...||..++-.|+
T Consensus 244 fNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~nPf-P~ETFANlLllyC 321 (459)
T KOG4340|consen 244 FNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQNPF-PPETFANLLLLYC 321 (459)
T ss_pred hhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcCCC-ChHHHHHHHHHHh
Confidence 3456789999999999999854 6777665543322 34555656555556655443 4568888888999
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHh-HcCCHHHHHHHHHhCCCCC--CHhHHHHHHHHHHhcCCHH---
Q 009066 285 HAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLG-RAGKLVEAVDLIKKMPFKP--QPAIFGTLLSACRVHKRLD--- 358 (545)
Q Consensus 285 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~p--~~~~~~~li~~~~~~g~~~--- 358 (545)
+..-++.|-.++.+-....-.-.+...|+ |++++. ..-..++|.+-++.+.-.- .......-+.- .++.+-+
T Consensus 322 KNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe-~r~~~dd~a~ 399 (459)
T KOG4340|consen 322 KNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQE-ARHNRDDEAI 399 (459)
T ss_pred hhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcccHHHH
Confidence 99999988888753221000012233343 344443 3446667766555441000 00000011111 1122212
Q ss_pred -HHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchHHHHHHHHhhh
Q 009066 359 -LAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKE 404 (545)
Q Consensus 359 -~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 404 (545)
.|++-+++.+++-- . ....-+..|.+..++..+.++|..-.+
T Consensus 400 R~ai~~Yd~~LE~YL---P-VlMa~AkiyW~~~Dy~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 400 RKAVNEYDETLEKYL---P-VLMAQAKIYWNLEDYPMVEKIFRKSVE 442 (459)
T ss_pred HHHHHHHHHHHHHHH---H-HHHHHHHhhccccccHHHHHHHHHHHh
Confidence 22233333333210 1 445556677788888888888876544
No 89
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.70 E-value=1.7e-05 Score=79.64 Aligned_cols=189 Identities=17% Similarity=0.238 Sum_probs=92.2
Q ss_pred HhccCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHHcCChHHHHHHH
Q 009066 182 CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLF 261 (545)
Q Consensus 182 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 261 (545)
......+.+|..+++.+..+. .-...|..+.+-|+..|+++-|+++|-+.. .++-.|..|.++|++++|.++-
T Consensus 742 ai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da~kla 814 (1636)
T KOG3616|consen 742 AIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDAFKLA 814 (1636)
T ss_pred HhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHHHHHH
Confidence 334445555555555554432 122234445556666666666666665432 2344455566666666665554
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhCCCCCCH
Q 009066 262 DKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQP 341 (545)
Q Consensus 262 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~ 341 (545)
++.. |.......|.+-..-.-..|++.+|.+++-.+ | .|+ .-|.+|-+.|..++.+++.++-. |+.
T Consensus 815 ~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti----~-~p~-----~aiqmydk~~~~ddmirlv~k~h--~d~ 880 (1636)
T KOG3616|consen 815 EECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITI----G-EPD-----KAIQMYDKHGLDDDMIRLVEKHH--GDH 880 (1636)
T ss_pred HHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEc----c-Cch-----HHHHHHHhhCcchHHHHHHHHhC--hhh
Confidence 4432 22333334444444444555555555554322 1 222 13455555566555555555541 222
Q ss_pred --hHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchHHHHHHH
Q 009066 342 --AIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRL 400 (545)
Q Consensus 342 --~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 400 (545)
.|...+..-+-..|+.+.|+..|-++ . -|..-.++|...+.|++|.++-+
T Consensus 881 l~dt~~~f~~e~e~~g~lkaae~~flea--------~-d~kaavnmyk~s~lw~dayriak 932 (1636)
T KOG3616|consen 881 LHDTHKHFAKELEAEGDLKAAEEHFLEA--------G-DFKAAVNMYKASELWEDAYRIAK 932 (1636)
T ss_pred hhHHHHHHHHHHHhccChhHHHHHHHhh--------h-hHHHHHHHhhhhhhHHHHHHHHh
Confidence 23344444455555555555555433 1 34445555555555555555443
No 90
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.70 E-value=0.0001 Score=76.81 Aligned_cols=246 Identities=15% Similarity=0.165 Sum_probs=154.4
Q ss_pred HHHhCCCHHHHHHHHhhCCcCCHhHHHHHHHHHHHcCChHHHHHHHhhCCCCCcccHHHHHHHhcchhhhccCChHHHHH
Q 009066 79 GFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLK 158 (545)
Q Consensus 79 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~g~~~~A~~ 158 (545)
.+..++-+++|..+|.+.. -+..+.+.|+. .-+.++.|.+.-++..+| ..|+.+..+- .+.|...+|++
T Consensus 1057 iai~~~LyEEAF~ifkkf~-~n~~A~~VLie---~i~~ldRA~efAe~~n~p--~vWsqlakAQ-----L~~~~v~dAie 1125 (1666)
T KOG0985|consen 1057 IAIENQLYEEAFAIFKKFD-MNVSAIQVLIE---NIGSLDRAYEFAERCNEP--AVWSQLAKAQ-----LQGGLVKDAIE 1125 (1666)
T ss_pred HHhhhhHHHHHHHHHHHhc-ccHHHHHHHHH---HhhhHHHHHHHHHhhCCh--HHHHHHHHHH-----HhcCchHHHHH
Confidence 3444455566666665542 22222233332 234455555554444433 4577787777 77777777777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhccC---
Q 009066 159 LLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR--- 235 (545)
Q Consensus 159 ~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--- 235 (545)
-|-+. .|+..|..++..+.+.|.+++-..++..+.+..-+|.+ -+.||-+|++.+++.+-++++..-..
T Consensus 1126 Syika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~AyAkt~rl~elE~fi~gpN~A~i 1197 (1666)
T KOG0985|consen 1126 SYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAYAKTNRLTELEEFIAGPNVANI 1197 (1666)
T ss_pred HHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHHHHhchHHHHHHHhcCCCchhH
Confidence 66432 25667778888888888888888877777776555543 34677778887777776655432110
Q ss_pred --------------------CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHH
Q 009066 236 --------------------KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQY 295 (545)
Q Consensus 236 --------------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 295 (545)
.++..|..+...+...|++..|.+.-++. .+..||..+-.+|...+.+..|
T Consensus 1198 ~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlA--- 1268 (1666)
T KOG0985|consen 1198 QQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFRLA--- 1268 (1666)
T ss_pred HHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhhHH---
Confidence 14556777888888888888887766553 2567888888888877666554
Q ss_pred HHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcC
Q 009066 296 FDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKP-QPAIFGTLLSACRVHK 355 (545)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g 355 (545)
+|.-- .+.-...-..-|+..|-..|.+++-+.+++.. |.+. ....|+-|.-.|.+-+
T Consensus 1269 --QiCGL-~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYskyk 1327 (1666)
T KOG0985|consen 1269 --QICGL-NIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKYK 1327 (1666)
T ss_pred --HhcCc-eEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhcC
Confidence 33211 23345556677888899999999998888866 4432 3355666666666543
No 91
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.69 E-value=3.5e-06 Score=90.20 Aligned_cols=200 Identities=12% Similarity=0.109 Sum_probs=163.9
Q ss_pred CCCcccHHHHHHHHHhcCCHHHHHHHHHhccCC--------ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHH
Q 009066 204 CKDTTALTPLISMYCKCGDLEDACKLFLEIQRK--------DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSIT 275 (545)
Q Consensus 204 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 275 (545)
|.+...|-..|......+++++|++++++.... -...|.++++.-...|.-+...++|+++.+. .---..
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHH
Confidence 445567777888888889999999999887642 3457888888888888888899999998874 212345
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhC-CCCC---CHhHHHHHHHHH
Q 009066 276 FVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKP---QPAIFGTLLSAC 351 (545)
Q Consensus 276 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p---~~~~~~~li~~~ 351 (545)
|..|+..|.+.+..++|.++++.|.++++ .....|...++.+.+..+-++|.+++++. ..-| ......-.+..-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 77888899999999999999999999765 67788999999999999999999998776 2223 344555666667
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchHHHHHHHHhhhCCCc
Q 009066 352 RVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVV 408 (545)
Q Consensus 352 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 408 (545)
.++|+.+++..+|+..+...|.-.. .|...++.-.+.|..+.++.+|++....++.
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtD-lW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTD-LWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchh-HHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 7899999999999999999998888 9999999999999999999999999888765
No 92
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.67 E-value=1.5e-05 Score=80.07 Aligned_cols=224 Identities=17% Similarity=0.141 Sum_probs=125.2
Q ss_pred HHHHHHhCCCChHHHHHHHccCC--CCChhhHHHHHHHHHcCCCCHHHHHHHHhcCCCCCeehHHHHHHHHHhCCCHHHH
Q 009066 12 VLAGFAKQRGKLKDAQELFDKIP--QPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKA 89 (545)
Q Consensus 12 li~~~~~~g~~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~a 89 (545)
-|+.|.|.|. +.+|.+....-. ..|......+-.++.+. .-+++|-.+|+++..+| ..+..|-+-.-+-+|
T Consensus 621 aiqlyika~~-p~~a~~~a~n~~~l~~de~il~~ia~alik~-elydkagdlfeki~d~d-----kale~fkkgdaf~ka 693 (1636)
T KOG3616|consen 621 AIQLYIKAGK-PAKAARAALNDEELLADEEILEHIAAALIKG-ELYDKAGDLFEKIHDFD-----KALECFKKGDAFGKA 693 (1636)
T ss_pred HHHHHHHcCC-chHHHHhhcCHHHhhccHHHHHHHHHHHHhh-HHHHhhhhHHHHhhCHH-----HHHHHHHcccHHHHH
Confidence 4555556555 554444332111 12333333333344444 45555555555554322 222333333334444
Q ss_pred HHHHhhCCcCCHh-HHHHHHHHHHHcCChHHHHHHHhhCCCCCcccHHHHHHHhcchhhhccCChHHHHHHHHHHHhCCC
Q 009066 90 RDLFLAMPEKNSV-SWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGI 168 (545)
Q Consensus 90 ~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~g~~~~A~~~~~~m~~~~~ 168 (545)
.++-+-.-+..++ .-.....-+...|+++.|..-|-+... .--.|.+. .....+.+|+.+++.++....
T Consensus 694 ielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~-----~~kaieaa-----i~akew~kai~ildniqdqk~ 763 (1636)
T KOG3616|consen 694 IELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC-----LIKAIEAA-----IGAKEWKKAISILDNIQDQKT 763 (1636)
T ss_pred HHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh-----HHHHHHHH-----hhhhhhhhhHhHHHHhhhhcc
Confidence 4444333222221 222344445556666666665543210 11123334 667788899998888876532
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhccCC--ChhhHHHHHH
Q 009066 169 RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK--DVVTWNAMIS 246 (545)
Q Consensus 169 ~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~--~~~~~~~li~ 246 (545)
-.--|..+..-|+..|+++.|+++|-..- .++-.|+||.+.|++++|.++-++...| .+..|-+-..
T Consensus 764 --~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakae 832 (1636)
T KOG3616|consen 764 --ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAE 832 (1636)
T ss_pred --ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHH
Confidence 23346667788899999999998886542 3556789999999999999988887665 3445666666
Q ss_pred HHHHcCChHHHHHHHHH
Q 009066 247 GYAQHGKGEKALRLFDK 263 (545)
Q Consensus 247 ~~~~~g~~~~A~~~~~~ 263 (545)
-+-.+|++.+|.++|-.
T Consensus 833 dldehgkf~eaeqlyit 849 (1636)
T KOG3616|consen 833 DLDEHGKFAEAEQLYIT 849 (1636)
T ss_pred hHHhhcchhhhhheeEE
Confidence 66677777777666543
No 93
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.67 E-value=3.8e-05 Score=86.06 Aligned_cols=353 Identities=10% Similarity=-0.023 Sum_probs=217.9
Q ss_pred HHcCCCCHHHHHHHHhcCCCCCeeh--HHHHHHHHHhCCCHHHHHHHHhhCCc----CCHhHHHHHHHHHHHcCChHHHH
Q 009066 48 ILLNSDDVVAAFDFFQRLPIKDTAS--WNTMISGFVQKKNMAKARDLFLAMPE----KNSVSWSAMISGYIECGQLDKAV 121 (545)
Q Consensus 48 ~~~~~g~~~~A~~~~~~m~~~d~~~--~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~ 121 (545)
+... |++.+|..........+... ...........|+++.+...+..+.. .++.........+...|++++|.
T Consensus 351 ~~~~-g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~ 429 (903)
T PRK04841 351 WLAQ-GFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVN 429 (903)
T ss_pred HHHC-CCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHH
Confidence 3344 66666666555554222111 11122334556788887777777631 23333444555667889999988
Q ss_pred HHHhhCC----CCC---c---c--cHHHHHHHhcchhhhccCChHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHhcc
Q 009066 122 ELFKVAP----VKS---V---V--AWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNA----SSLSSVLLGCSHL 185 (545)
Q Consensus 122 ~~f~~~~----~~~---~---~--~~~~li~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~pd~----~t~~~ll~~~~~~ 185 (545)
..+.... ..+ . . ....+...+ ...|++++|...+++....-...+. ...+.+...+...
T Consensus 430 ~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~-----~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~ 504 (903)
T PRK04841 430 TLLARAEQELKDRNIELDGTLQAEFNALRAQVA-----INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCK 504 (903)
T ss_pred HHHHHHHHhccccCcccchhHHHHHHHHHHHHH-----HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHc
Confidence 8886532 111 1 1 111122233 6789999999999988763111222 2344455566789
Q ss_pred CcHHHHHHHHHHHHhCCCC---C--CcccHHHHHHHHHhcCCHHHHHHHHHhccC-------CC----hhhHHHHHHHHH
Q 009066 186 SSLQLGKQVHQLVFKSPLC---K--DTTALTPLISMYCKCGDLEDACKLFLEIQR-------KD----VVTWNAMISGYA 249 (545)
Q Consensus 186 ~~~~~a~~~~~~~~~~g~~---~--~~~~~~~li~~y~~~g~~~~A~~~f~~~~~-------~~----~~~~~~li~~~~ 249 (545)
|+++.|...+.......-. + .......+...+...|++++|...+++... ++ ...+..+...+.
T Consensus 505 G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 584 (903)
T PRK04841 505 GELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLW 584 (903)
T ss_pred CCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHH
Confidence 9999999998887653111 1 123445567788889999999998877543 11 223445556677
Q ss_pred HcCChHHHHHHHHHHHHc--CCCCC--HHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHH-----HHHHHHHh
Q 009066 250 QHGKGEKALRLFDKMKDE--GMKPD--SITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY-----TCMVDLLG 320 (545)
Q Consensus 250 ~~g~~~~A~~~~~~m~~~--g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-----~~li~~~~ 320 (545)
..|++++|...+++.... ...+. ...+..+.......|+.++|...+...............+ ...+..+.
T Consensus 585 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 664 (903)
T PRK04841 585 EWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQ 664 (903)
T ss_pred HhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHH
Confidence 789999999999887653 11122 2334445567778999999999888775421111111111 11234456
Q ss_pred HcCCHHHHHHHHHhCCCC--CCH----hHHHHHHHHHHhcCCHHHHHHHHHHHhcCC-----CCCCchhHHHHHHHHHHc
Q 009066 321 RAGKLVEAVDLIKKMPFK--PQP----AIFGTLLSACRVHKRLDLAEFAAMNLFNLN-----PANAAGCYVQLANIYAAM 389 (545)
Q Consensus 321 ~~g~~~~A~~~~~~m~~~--p~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-----p~~~~~~~~~l~~~~~~~ 389 (545)
..|+.+.|...+...... ... ..+..+..++...|+.++|...++++.... +.....++..++.++...
T Consensus 665 ~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~ 744 (903)
T PRK04841 665 MTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQ 744 (903)
T ss_pred HCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHc
Confidence 689999999998776211 111 123456677888999999999999887642 111112677888899999
Q ss_pred CCchHHHHHHHHhhhCC
Q 009066 390 KKWDDVARIRLSMKENN 406 (545)
Q Consensus 390 g~~~~a~~~~~~m~~~~ 406 (545)
|+.++|...+.+..+..
T Consensus 745 G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 745 GRKSEAQRVLLEALKLA 761 (903)
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 99999999999887643
No 94
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.65 E-value=8.5e-05 Score=83.30 Aligned_cols=354 Identities=10% Similarity=-0.004 Sum_probs=223.8
Q ss_pred HHHHHHHhCCCChHHHHHHHccCCCCChhh--HHHHHHHHHcCCCCHHHHHHHHhcCC----CCCeehHHHHHHHHHhCC
Q 009066 11 SVLAGFAKQRGKLKDAQELFDKIPQPDVVS--YNIMLSCILLNSDDVVAAFDFFQRLP----IKDTASWNTMISGFVQKK 84 (545)
Q Consensus 11 ~li~~~~~~g~~~~~A~~~f~~~~~~~~~~--~~~li~~~~~~~g~~~~A~~~~~~m~----~~d~~~~~~li~~~~~~g 84 (545)
.....|...|. +.+|.........++... ........... |+++.+..+++.++ ..+..........+...|
T Consensus 346 raa~~~~~~g~-~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~-g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g 423 (903)
T PRK04841 346 AAAEAWLAQGF-PSEAIHHALAAGDAQLLRDILLQHGWSLFNQ-GELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQH 423 (903)
T ss_pred HHHHHHHHCCC-HHHHHHHHHHCCCHHHHHHHHHHhHHHHHhc-CChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCC
Confidence 34455666666 777776666655442221 01111234445 88888888888875 223333344455567789
Q ss_pred CHHHHHHHHhhCCc----C----C----HhHHHHHHHHHHHcCChHHHHHHHhhCCC----CCc----ccHHHHHHHhcc
Q 009066 85 NMAKARDLFLAMPE----K----N----SVSWSAMISGYIECGQLDKAVELFKVAPV----KSV----VAWTAMISGYMK 144 (545)
Q Consensus 85 ~~~~a~~~~~~~~~----~----~----~~~~~~li~~~~~~g~~~~A~~~f~~~~~----~~~----~~~~~li~~~~~ 144 (545)
+++++...+..... . + ......+...+...|++++|...+++... .+. ..++.+...+
T Consensus 424 ~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~-- 501 (903)
T PRK04841 424 RYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVH-- 501 (903)
T ss_pred CHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHH--
Confidence 99999888876531 1 1 11223344566789999999998876432 221 2334455555
Q ss_pred hhhhccCChHHHHHHHHHHHhCC--C-CC--CHHHHHHHHHHHhccCcHHHHHHHHHHHHhC----CCCC---CcccHHH
Q 009066 145 FGYVENSWAEDGLKLLRMMIGLG--I-RP--NASSLSSVLLGCSHLSSLQLGKQVHQLVFKS----PLCK---DTTALTP 212 (545)
Q Consensus 145 ~g~~~~g~~~~A~~~~~~m~~~~--~-~p--d~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----g~~~---~~~~~~~ 212 (545)
...|++++|...+.+..... . .+ ...++..+...+...|+++.|...+++.... +... ....+..
T Consensus 502 ---~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 578 (903)
T PRK04841 502 ---HCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRI 578 (903)
T ss_pred ---HHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHH
Confidence 78999999999998886421 1 11 1234455566778899999999998877552 2211 1223445
Q ss_pred HHHHHHhcCCHHHHHHHHHhccC------C--ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-CCHHHH-----HH
Q 009066 213 LISMYCKCGDLEDACKLFLEIQR------K--DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMK-PDSITF-----VA 278 (545)
Q Consensus 213 li~~y~~~g~~~~A~~~f~~~~~------~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~-----~~ 278 (545)
+...+...|++++|...+++... + ....+..+...+...|++++|...+++....... .....+ ..
T Consensus 579 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~ 658 (903)
T PRK04841 579 RAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKV 658 (903)
T ss_pred HHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHH
Confidence 66777888999999999887642 1 1234555666788899999999999888652111 111111 11
Q ss_pred HHHHHHccCcHHHHHHHHHHhHHhcCCCCCH----HHHHHHHHHHhHcCCHHHHHHHHHhC-------CCCCC-HhHHHH
Q 009066 279 LLLACNHAGLVDLGIQYFDSMVNDYGIAAKP----DHYTCMVDLLGRAGKLVEAVDLIKKM-------PFKPQ-PAIFGT 346 (545)
Q Consensus 279 ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~-~~~~~~ 346 (545)
.+..+...|+.+.+..++...... . .... ..+..+..++...|+.++|...+++. +..++ ..+...
T Consensus 659 ~~~~~~~~g~~~~A~~~l~~~~~~-~-~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~ 736 (903)
T PRK04841 659 RLIYWQMTGDKEAAANWLRQAPKP-E-FANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLIL 736 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHhcCCC-C-CccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHH
Confidence 123445578999999988765431 1 1111 11346777888999999999988876 22222 245666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhcCCCC
Q 009066 347 LLSACRVHKRLDLAEFAAMNLFNLNPA 373 (545)
Q Consensus 347 li~~~~~~g~~~~A~~~~~~~~~~~p~ 373 (545)
+..++...|+.++|...+.+++++...
T Consensus 737 la~a~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 737 LNQLYWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence 777889999999999999999886544
No 95
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=2.4e-05 Score=76.23 Aligned_cols=370 Identities=14% Similarity=0.113 Sum_probs=215.0
Q ss_pred HHhCCCChHHHHHHHccCC---CCChhhHHHHHHHHHcCCCCHHHHHHHHhcCC--CCCe-ehHHHHHHHHHhCCCHHHH
Q 009066 16 FAKQRGKLKDAQELFDKIP---QPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP--IKDT-ASWNTMISGFVQKKNMAKA 89 (545)
Q Consensus 16 ~~~~g~~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~~g~~~~A~~~~~~m~--~~d~-~~~~~li~~~~~~g~~~~a 89 (545)
-...|+ ++.|...|.... .+|-+.|..-..+|+.. |++++|++=-.+-. .|+. ..|.....++.-.|++++|
T Consensus 12 a~s~~d-~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~-~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA 89 (539)
T KOG0548|consen 12 AFSSGD-FETAIRLFTEAIMLSPTNHVLYSNRSAAYASL-GSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEA 89 (539)
T ss_pred hccccc-HHHHHHHHHHHHccCCCccchhcchHHHHHHH-hhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHH
Confidence 345577 999999997755 46778888888899999 99999987665554 5554 5799999999999999999
Q ss_pred HHHHhhCCc---CCHhHHHHHHHHHHHcCChHHHHHHHhh------CC-CC------CcccHHHHHHHhcchh-----hh
Q 009066 90 RDLFLAMPE---KNSVSWSAMISGYIECGQLDKAVELFKV------AP-VK------SVVAWTAMISGYMKFG-----YV 148 (545)
Q Consensus 90 ~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~------~~-~~------~~~~~~~li~~~~~~g-----~~ 148 (545)
+.-|.+-++ .|...++.|.+++.... .+.+.|.. +. .| ....|..++..+-+.. +.
T Consensus 90 ~~ay~~GL~~d~~n~~L~~gl~~a~~~~~---~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l 166 (539)
T KOG0548|consen 90 ILAYSEGLEKDPSNKQLKTGLAQAYLEDY---AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYL 166 (539)
T ss_pred HHHHHHHhhcCCchHHHHHhHHHhhhHHH---HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhccc
Confidence 999998874 35667777887771111 11222211 00 00 1123344444332111 01
Q ss_pred ccCChHHHHHHHHHH-----HhCC-------CCC------------C----------HHHHHHHHHHHhccCcHHHHHHH
Q 009066 149 ENSWAEDGLKLLRMM-----IGLG-------IRP------------N----------ASSLSSVLLGCSHLSSLQLGKQV 194 (545)
Q Consensus 149 ~~g~~~~A~~~~~~m-----~~~~-------~~p------------d----------~~t~~~ll~~~~~~~~~~~a~~~ 194 (545)
+-.+...|...+... ...| ..| | ..-...+.++.-+..+++.+.+-
T Consensus 167 ~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~ 246 (539)
T KOG0548|consen 167 NDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQH 246 (539)
T ss_pred ccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHH
Confidence 111111111111100 0000 011 0 01133445555556666666666
Q ss_pred HHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhccCCChh---hHH-------HHHHHHHHcCChHHHHHHHHHH
Q 009066 195 HQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVV---TWN-------AMISGYAQHGKGEKALRLFDKM 264 (545)
Q Consensus 195 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~---~~~-------~li~~~~~~g~~~~A~~~~~~m 264 (545)
|...+... .+..-++....+|...|.+......-+...+..-. -|+ .+..+|.+.++++.|+..|.+.
T Consensus 247 y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~ka 324 (539)
T KOG0548|consen 247 YAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKA 324 (539)
T ss_pred HHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHH
Confidence 66666654 45555666666777777766666555554432111 122 2233455556677777777765
Q ss_pred HHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCH-HHHHHHHHHHhHcCCHHHHHHHHHhC-CCCC-CH
Q 009066 265 KDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKP-DHYTCMVDLLGRAGKLVEAVDLIKKM-PFKP-QP 341 (545)
Q Consensus 265 ~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~ 341 (545)
+..-..||..+ +....+++........ -+.|.. .-...-...+.+.|++.+|.+.|.++ ...| |.
T Consensus 325 Lte~Rt~~~ls---------~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da 392 (539)
T KOG0548|consen 325 LTEHRTPDLLS---------KLKEAEKALKEAERKA---YINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDA 392 (539)
T ss_pred hhhhcCHHHHH---------HHHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchh
Confidence 54333333211 1122333333332221 112221 11112255567788888888888877 3334 56
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchHHHHHHHHhhhC
Q 009066 342 AIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKEN 405 (545)
Q Consensus 342 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 405 (545)
..|..-..+|.+.|.+..|+.-.+..++++|+... .|..=+.++....+|++|.+.|.+..+.
T Consensus 393 ~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~k-gy~RKg~al~~mk~ydkAleay~eale~ 455 (539)
T KOG0548|consen 393 RLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIK-AYLRKGAALRAMKEYDKALEAYQEALEL 455 (539)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 77888888888888888888888888888888877 7887788888888888888888776654
No 96
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.62 E-value=3.9e-06 Score=77.60 Aligned_cols=181 Identities=10% Similarity=0.005 Sum_probs=117.8
Q ss_pred CcccHHHHHHHHHhcCCHHHHHHHHHhccC--CC-h---hhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH--HHHH
Q 009066 206 DTTALTPLISMYCKCGDLEDACKLFLEIQR--KD-V---VTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDS--ITFV 277 (545)
Q Consensus 206 ~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~~-~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~ 277 (545)
....+..++..|.+.|++++|...|+++.. |+ . .+|..+..+|.+.|++++|+..++++.+....... .++.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 344556677778888888888888887754 22 1 35667777888888888888888888764322111 1333
Q ss_pred HHHHHHHcc--------CcHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHhHcCCHHHHHHHHHhCCCCCCHhHHHHHH
Q 009066 278 ALLLACNHA--------GLVDLGIQYFDSMVNDYGIAAK-PDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLL 348 (545)
Q Consensus 278 ~ll~a~~~~--------g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li 348 (545)
.+..++... |+.++|.+.++.+.+. .|+ ...+..+..... ..... ......+.
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~~~----~~~~~-----------~~~~~~~a 173 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRMDY----LRNRL-----------AGKELYVA 173 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHHHH----HHHHH-----------HHHHHHHH
Confidence 444444443 6677788888777754 232 222222211100 11000 00112455
Q ss_pred HHHHhcCCHHHHHHHHHHHhcCCCCCC---chhHHHHHHHHHHcCCchHHHHHHHHhhhC
Q 009066 349 SACRVHKRLDLAEFAAMNLFNLNPANA---AGCYVQLANIYAAMKKWDDVARIRLSMKEN 405 (545)
Q Consensus 349 ~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 405 (545)
..+...|+++.|...++++++..|+.+ . .+..++.++.+.|++++|..+++.+..+
T Consensus 174 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~-a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 174 RFYLKRGAYVAAINRFETVVENYPDTPATEE-ALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHcCChHHHHHHHHHHHHHCCCCcchHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 678899999999999999999877643 4 7889999999999999999999887654
No 97
>PF12854 PPR_1: PPR repeat
Probab=98.59 E-value=7.4e-08 Score=58.04 Aligned_cols=33 Identities=33% Similarity=0.587 Sum_probs=25.2
Q ss_pred CCCCCcccHHHHHHHHHhcCCHHHHHHHHHhcc
Q 009066 202 PLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ 234 (545)
Q Consensus 202 g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~ 234 (545)
|+.||..+|++||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 667777777777777777777777777777764
No 98
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.59 E-value=0.00017 Score=72.04 Aligned_cols=371 Identities=13% Similarity=0.089 Sum_probs=211.5
Q ss_pred CCCChHHHHHHHccCCC---CChhhHHHHHHHHHcCCCCHHHHHHHHhcCC--CC-CeehHHHHHHHHHhCCCHHHHHHH
Q 009066 19 QRGKLKDAQELFDKIPQ---PDVVSYNIMLSCILLNSDDVVAAFDFFQRLP--IK-DTASWNTMISGFVQKKNMAKARDL 92 (545)
Q Consensus 19 ~g~~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~~g~~~~A~~~~~~m~--~~-d~~~~~~li~~~~~~g~~~~a~~~ 92 (545)
.|+ .++|......-.+ .+.+.|..+-- +.++..++++|++.|.... .| |...|.-+.-.-++.|+++.....
T Consensus 54 lg~-~~ea~~~vr~glr~d~~S~vCwHv~gl-~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~t 131 (700)
T KOG1156|consen 54 LGK-KEEAYELVRLGLRNDLKSHVCWHVLGL-LQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLET 131 (700)
T ss_pred ccc-hHHHHHHHHHHhccCcccchhHHHHHH-HHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHH
Confidence 355 6777666655443 45567876554 3444478889998888765 33 445666665556667777666655
Q ss_pred HhhCCc---CCHhHHHHHHHHHHHcCChHHHHHHHhhCCC-----CCcccHHHHHHHhcc-hhhhccCChHHHHHHHHHH
Q 009066 93 FLAMPE---KNSVSWSAMISGYIECGQLDKAVELFKVAPV-----KSVVAWTAMISGYMK-FGYVENSWAEDGLKLLRMM 163 (545)
Q Consensus 93 ~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~-----~~~~~~~~li~~~~~-~g~~~~g~~~~A~~~~~~m 163 (545)
-.+..+ .....|..+.-++.-.|+...|..+.++..+ ++...+.-....+.+ .-....|..++|++.+..-
T Consensus 132 r~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~ 211 (700)
T KOG1156|consen 132 RNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDN 211 (700)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhh
Confidence 554442 3445677777777778888888777654331 222222222111100 0015566667776665544
Q ss_pred HhCCCCCCHHHH-HHHHHHHhccCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHH-HHHHhccC------
Q 009066 164 IGLGIRPNASSL-SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC-KLFLEIQR------ 235 (545)
Q Consensus 164 ~~~~~~pd~~t~-~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~-~~f~~~~~------ 235 (545)
... ..|...+ ..-...+.+.+++++|..++..++... +.+...|-.+..++++--+.-++. .+|....+
T Consensus 212 e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn-Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e 288 (700)
T KOG1156|consen 212 EKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN-PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHE 288 (700)
T ss_pred hhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC-chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccc
Confidence 321 1222222 223344566777777777777777664 223333444444444333333333 44444332
Q ss_pred ----------------------------CC-hhhHHHHHHHHHHcCChHHHHHHHHHHHH----cCC----------CCC
Q 009066 236 ----------------------------KD-VVTWNAMISGYAQHGKGEKALRLFDKMKD----EGM----------KPD 272 (545)
Q Consensus 236 ----------------------------~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~----------~p~ 272 (545)
+. +.++..+.+.|-.-...+-..++.-.+.. .|. +|.
T Consensus 289 ~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~Pt 368 (700)
T KOG1156|consen 289 CPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPT 368 (700)
T ss_pred cchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCch
Confidence 11 12333344333222211111111112211 111 344
Q ss_pred HH--HHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHhHcCCHHHHHHHHHhCC-C-CCCHhHHHHH
Q 009066 273 SI--TFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK-PDHYTCMVDLLGRAGKLVEAVDLIKKMP-F-KPQPAIFGTL 347 (545)
Q Consensus 273 ~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-~-~p~~~~~~~l 347 (545)
.. |+..+...+-..|+++.|..+++..+. ..|+ ++.|..=..++...|.+++|..++++.. . .||..+-.--
T Consensus 369 tllWt~y~laqh~D~~g~~~~A~~yId~AId---HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKc 445 (700)
T KOG1156|consen 369 TLLWTLYFLAQHYDKLGDYEVALEYIDLAID---HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKC 445 (700)
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHhc---cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHH
Confidence 43 455667888899999999999998874 3565 5777777899999999999999998872 1 2555444344
Q ss_pred HHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchHHHHHHHH
Q 009066 348 LSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLS 401 (545)
Q Consensus 348 i~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 401 (545)
..-..+..+.++|.++..+.-+-+-+ +...|..+-+--=..+.|..+++.
T Consensus 446 AKYmLrAn~i~eA~~~~skFTr~~~~----~~~~L~~mqcmWf~~E~g~ay~r~ 495 (700)
T KOG1156|consen 446 AKYMLRANEIEEAEEVLSKFTREGFG----AVNNLAEMQCMWFQLEDGEAYLRQ 495 (700)
T ss_pred HHHHHHccccHHHHHHHHHhhhcccc----hhhhHHHhhhHHHhHhhhHHHHHH
Confidence 55566889999999999887665542 444555554444456666665543
No 99
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.58 E-value=1.1e-05 Score=72.59 Aligned_cols=298 Identities=14% Similarity=0.170 Sum_probs=177.6
Q ss_pred HHHHHHHHHhCCCHHHHHHHHhhCCcC---CHhHHHHHHHHHHHcCChHHHHHHHhhCCC--CCcccHHHH-HHHhcchh
Q 009066 73 WNTMISGFVQKKNMAKARDLFLAMPEK---NSVSWSAMISGYIECGQLDKAVELFKVAPV--KSVVAWTAM-ISGYMKFG 146 (545)
Q Consensus 73 ~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~~~~~~~l-i~~~~~~g 146 (545)
+++.+..+.+..+++.|++++..-.+. +....+.|..+|....++..|-..++++.. |...-|... ...+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSL---- 88 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSL---- 88 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHH----
Confidence 666777777888888888887766543 345566777888888888888888888753 222222211 2233
Q ss_pred hhccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HhccCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHH
Q 009066 147 YVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLG--CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 224 (545)
Q Consensus 147 ~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~--~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~ 224 (545)
-+.+.+..|+.+...|... |+-..-..-+.+ --+.+++..++.+.++....| +..+.+...-...+.|+++
T Consensus 89 -Y~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyE 161 (459)
T KOG4340|consen 89 -YKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYE 161 (459)
T ss_pred -HHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHH
Confidence 5677788888888777642 222111111111 124455556655555544322 3333333444455667777
Q ss_pred HHHHHHHhccC----CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHH------
Q 009066 225 DACKLFLEIQR----KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ------ 294 (545)
Q Consensus 225 ~A~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~------ 294 (545)
.|.+-|+...+ .....||.-+.-| +.|++..|+++..++.+.|++.... ++ .|...++..
T Consensus 162 aAvqkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPE-lg--------IGm~tegiDvrsvgN 231 (459)
T KOG4340|consen 162 AAVQKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPE-LG--------IGMTTEGIDVRSVGN 231 (459)
T ss_pred HHHHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCc-cC--------ccceeccCchhcccc
Confidence 77777766654 2445555444333 4566677777777776666542211 11 011111111
Q ss_pred ---HHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhCC----CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009066 295 ---YFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP----FKPQPAIFGTLLSACRVHKRLDLAEFAAMNL 367 (545)
Q Consensus 295 ---~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 367 (545)
++... -+..+|.-...+.+.|+++.|.+-+-.|| ...|++|...+.-. -..+++..+.+-+.-+
T Consensus 232 t~~lh~Sa--------l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFL 302 (459)
T KOG4340|consen 232 TLVLHQSA--------LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFL 302 (459)
T ss_pred hHHHHHHH--------HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHH
Confidence 11100 01223333445678899999999999994 22466666554322 2356677777777888
Q ss_pred hcCCCCCCchhHHHHHHHHHHcCCchHHHHHHHH
Q 009066 368 FNLNPANAAGCYVQLANIYAAMKKWDDVARIRLS 401 (545)
Q Consensus 368 ~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 401 (545)
++++|-+.. ||..++-.|++..-++-|..++.+
T Consensus 303 L~~nPfP~E-TFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 303 LQQNPFPPE-TFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred HhcCCCChH-HHHHHHHHHhhhHHHhHHHHHHhh
Confidence 899998777 999999999999999988888754
No 100
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.57 E-value=0.00022 Score=70.53 Aligned_cols=336 Identities=12% Similarity=0.073 Sum_probs=200.2
Q ss_pred HHHHHcCCCCHHHHHHHHhcCC---CCCeehHHHHHHHHHhCCCHHHHHHHHhhCCcCCHhHHHHH----HHHHHHcCCh
Q 009066 45 LSCILLNSDDVVAAFDFFQRLP---IKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAM----ISGYIECGQL 117 (545)
Q Consensus 45 i~~~~~~~g~~~~A~~~~~~m~---~~d~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l----i~~~~~~g~~ 117 (545)
+.-+..+ |++++|.+...++. +.|...+..=+-+..+.+.+++|+.+.+.-... .+++.. ..+..+.+..
T Consensus 19 ln~~~~~-~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrlnk~ 95 (652)
T KOG2376|consen 19 LNRHGKN-GEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLNKL 95 (652)
T ss_pred HHHhccc-hHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcccH
Confidence 4456677 99999999988887 456677888888899999999999776654321 222222 3344578999
Q ss_pred HHHHHHHhhCCCCCcccHHHHHHHhcchhhhccCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHH
Q 009066 118 DKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRP-NASSLSSVLLGCSHLSSLQLGKQVHQ 196 (545)
Q Consensus 118 ~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~p-d~~t~~~ll~~~~~~~~~~~a~~~~~ 196 (545)
|+|...++.....+..+...-...+ -+.|++++|+++|+.+.+.+.+- |...-..++.+-.. -.+.
T Consensus 96 Dealk~~~~~~~~~~~ll~L~AQvl-----Yrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~----l~~~---- 162 (652)
T KOG2376|consen 96 DEALKTLKGLDRLDDKLLELRAQVL-----YRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA----LQVQ---- 162 (652)
T ss_pred HHHHHHHhcccccchHHHHHHHHHH-----HHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh----hhHH----
Confidence 9999999965555544555555666 78999999999999998776332 22222222222111 1111
Q ss_pred HHHhCCCCCCcccHHH---HHHHHHhcCCHHHHHHHHHhcc--------CCCh----------hhHHHHHHHHHHcCChH
Q 009066 197 LVFKSPLCKDTTALTP---LISMYCKCGDLEDACKLFLEIQ--------RKDV----------VTWNAMISGYAQHGKGE 255 (545)
Q Consensus 197 ~~~~~g~~~~~~~~~~---li~~y~~~g~~~~A~~~f~~~~--------~~~~----------~~~~~li~~~~~~g~~~ 255 (545)
.+......| ..+|.. ..-.+...|++.+|+++++... +.|. ..--.|.-.+...|+..
T Consensus 163 ~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ 241 (652)
T KOG2376|consen 163 LLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTA 241 (652)
T ss_pred HHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchH
Confidence 122222222 223322 3455677899999999999872 1111 12333455677899999
Q ss_pred HHHHHHHHHHHcCCCCCHHH----HHHHHHHHHccCcH-H-HHHHHHHHhHHhc----------CCCCCHHHHHHHHHHH
Q 009066 256 KALRLFDKMKDEGMKPDSIT----FVALLLACNHAGLV-D-LGIQYFDSMVNDY----------GIAAKPDHYTCMVDLL 319 (545)
Q Consensus 256 ~A~~~~~~m~~~g~~p~~~t----~~~ll~a~~~~g~~-~-~a~~~~~~~~~~~----------~~~~~~~~~~~li~~~ 319 (545)
+|..++...+... .+|... -|.|+. ...-.++ + .++..++...... .-.....--++++.+|
T Consensus 242 ea~~iy~~~i~~~-~~D~~~~Av~~NNLva-~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~ 319 (652)
T KOG2376|consen 242 EASSIYVDIIKRN-PADEPSLAVAVNNLVA-LSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF 319 (652)
T ss_pred HHHHHHHHHHHhc-CCCchHHHHHhcchhh-hccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998864 445422 222322 2221111 1 1122222111000 0000111122344444
Q ss_pred hHcCCHHHHHHHHHhCCC-CCCHhHHHHHHHH-HHhc-CCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchHHH
Q 009066 320 GRAGKLVEAVDLIKKMPF-KPQPAIFGTLLSA-CRVH-KRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVA 396 (545)
Q Consensus 320 ~~~g~~~~A~~~~~~m~~-~p~~~~~~~li~~-~~~~-g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~ 396 (545)
.+..+.+.++-...|. .|.. .+.+++.. .... .....|..++....+..|..+......++......|+++.|.
T Consensus 320 --tnk~~q~r~~~a~lp~~~p~~-~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~ 396 (652)
T KOG2376|consen 320 --TNKMDQVRELSASLPGMSPES-LFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVAL 396 (652)
T ss_pred --hhhHHHHHHHHHhCCccCchH-HHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHH
Confidence 4556677777777643 3444 34444443 3222 247788888888889999885435666777789999999999
Q ss_pred HHHHHh
Q 009066 397 RIRLSM 402 (545)
Q Consensus 397 ~~~~~m 402 (545)
+++...
T Consensus 397 ~il~~~ 402 (652)
T KOG2376|consen 397 EILSLF 402 (652)
T ss_pred HHHHHH
Confidence 999843
No 101
>PLN02789 farnesyltranstransferase
Probab=98.57 E-value=2.4e-05 Score=74.88 Aligned_cols=176 Identities=10% Similarity=0.070 Sum_probs=98.5
Q ss_pred HHHHHHHHHhcC-CHHHHHHHHHhccC---CChhhHHHHHHHHHHcCCh--HHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 009066 210 LTPLISMYCKCG-DLEDACKLFLEIQR---KDVVTWNAMISGYAQHGKG--EKALRLFDKMKDEGMKPDSITFVALLLAC 283 (545)
Q Consensus 210 ~~~li~~y~~~g-~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 283 (545)
|+....++.+.| ++++++..++++.+ ++..+|+.....+.+.|.. ++++.+++++.+...+ |..+|.....++
T Consensus 74 W~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l 152 (320)
T PLN02789 74 WHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVL 152 (320)
T ss_pred HHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence 333333333344 34555555555442 2334455444444444432 4555566565554322 444555555555
Q ss_pred HccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHc---CC----HHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhc
Q 009066 284 NHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRA---GK----LVEAVDLIKKM-PFKP-QPAIFGTLLSACRVH 354 (545)
Q Consensus 284 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~----~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~ 354 (545)
...|+++++++.++++++. -+.+...|+.....+.+. |. .++++++..++ ...| |...|+.+...+...
T Consensus 153 ~~l~~~~eeL~~~~~~I~~--d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~ 230 (320)
T PLN02789 153 RTLGGWEDELEYCHQLLEE--DVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDD 230 (320)
T ss_pred HHhhhHHHHHHHHHHHHHH--CCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcC
Confidence 5556666666666666542 233344444444333332 22 24555655443 4445 567888888888774
Q ss_pred ----CCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHc
Q 009066 355 ----KRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAM 389 (545)
Q Consensus 355 ----g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~ 389 (545)
++..+|...+.++.+.+|+.+. +...|+.+|+..
T Consensus 231 ~~~l~~~~~~~~~~~~~~~~~~~s~~-al~~l~d~~~~~ 268 (320)
T PLN02789 231 KEALVSDPEVSSVCLEVLSKDSNHVF-ALSDLLDLLCEG 268 (320)
T ss_pred CcccccchhHHHHHHHhhcccCCcHH-HHHHHHHHHHhh
Confidence 3446688888888888888877 888999999864
No 102
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.54 E-value=6.4e-06 Score=73.33 Aligned_cols=118 Identities=6% Similarity=0.066 Sum_probs=93.4
Q ss_pred cCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHH-HhcCC--HHHH
Q 009066 286 AGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKP-QPAIFGTLLSAC-RVHKR--LDLA 360 (545)
Q Consensus 286 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~-~~~g~--~~~A 360 (545)
.++.+++...++...+ .-+.+...|..|...|...|++++|...|++. ...| +...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 5566777777776665 33667888888888899999999999888877 4445 556777777764 66676 5899
Q ss_pred HHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchHHHHHHHHhhhCC
Q 009066 361 EFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENN 406 (545)
Q Consensus 361 ~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 406 (545)
..+++++++.+|++.. ++..|+..+...|++++|...++++.+..
T Consensus 130 ~~~l~~al~~dP~~~~-al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 130 REMIDKALALDANEVT-ALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHhCCCChh-HHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 9999999999999888 89999999999999999999999887643
No 103
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.54 E-value=2.3e-05 Score=84.19 Aligned_cols=235 Identities=8% Similarity=0.079 Sum_probs=177.6
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhC-CCCC---CcccHHHHHHHHHhcCCHHHHHHHHHhccC
Q 009066 160 LRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKS-PLCK---DTTALTPLISMYCKCGDLEDACKLFLEIQR 235 (545)
Q Consensus 160 ~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~~---~~~~~~~li~~y~~~g~~~~A~~~f~~~~~ 235 (545)
|.++.... +-....|..-|....+.++++.|+++.+++++. ++.- -..+|.+++++-..-|.-+...++|+++.+
T Consensus 1447 ferlvrss-PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcq 1525 (1710)
T KOG1070|consen 1447 FERLVRSS-PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQ 1525 (1710)
T ss_pred HHHHHhcC-CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHH
Confidence 44444332 334567888888888999999999999998774 2211 245788888888888888999999999886
Q ss_pred C--ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCC--CHHH
Q 009066 236 K--DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAA--KPDH 311 (545)
Q Consensus 236 ~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~ 311 (545)
- ....|..|...|.+.+.+++|.++++.|.+. ..-....|...+..+.+.+.-+.|..++.+..+. ++. ....
T Consensus 1526 ycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~ 1602 (1710)
T KOG1070|consen 1526 YCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEF 1602 (1710)
T ss_pred hcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHH
Confidence 3 3467889999999999999999999999874 3346678888999999999999999999998864 232 4555
Q ss_pred HHHHHHHHhHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCC--CCCCchhHHHHHHHHH
Q 009066 312 YTCMVDLLGRAGKLVEAVDLIKKM-PFKP-QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLN--PANAAGCYVQLANIYA 387 (545)
Q Consensus 312 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~~l~~~~~ 387 (545)
..-.+++-.+.|+.+.+..+|+.. .-.| -...|+..+..-.++|+.+.+..+|++++.+. |...-..|...+..-.
T Consensus 1603 IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk 1682 (1710)
T KOG1070|consen 1603 ISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEK 1682 (1710)
T ss_pred HHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHH
Confidence 667778888999999999999987 2223 45689999999999999999999999998754 4443324444444444
Q ss_pred HcCCchHHHHH
Q 009066 388 AMKKWDDVARI 398 (545)
Q Consensus 388 ~~g~~~~a~~~ 398 (545)
+.|+-+.+..+
T Consensus 1683 ~~Gde~~vE~V 1693 (1710)
T KOG1070|consen 1683 SHGDEKNVEYV 1693 (1710)
T ss_pred hcCchhhHHHH
Confidence 44555444443
No 104
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.52 E-value=0.00025 Score=72.27 Aligned_cols=93 Identities=15% Similarity=0.125 Sum_probs=69.2
Q ss_pred HHHHHHHHhHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHc
Q 009066 312 YTCMVDLLGRAGKLVEAVDLIKKM-PFKP-QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAM 389 (545)
Q Consensus 312 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~ 389 (545)
|....+.+.+.+..++|...+.+. .+.| ....|......+...|..++|...|..++.++|++.. ....++.++...
T Consensus 653 wllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~-s~~Ala~~lle~ 731 (799)
T KOG4162|consen 653 WLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVP-SMTALAELLLEL 731 (799)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcH-HHHHHHHHHHHh
Confidence 345566667777777777666555 3333 4456666666777888999999999999999999988 899999999999
Q ss_pred CCchHHHH--HHHHhhhC
Q 009066 390 KKWDDVAR--IRLSMKEN 405 (545)
Q Consensus 390 g~~~~a~~--~~~~m~~~ 405 (545)
|+-.-|.. ++..+.+.
T Consensus 732 G~~~la~~~~~L~dalr~ 749 (799)
T KOG4162|consen 732 GSPRLAEKRSLLSDALRL 749 (799)
T ss_pred CCcchHHHHHHHHHHHhh
Confidence 97766666 66666554
No 105
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.50 E-value=4.2e-06 Score=70.43 Aligned_cols=122 Identities=11% Similarity=0.033 Sum_probs=89.0
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhC-CC
Q 009066 259 RLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PF 337 (545)
Q Consensus 259 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~ 337 (545)
.+|++..+ +.|+. +..+..++...|++++|...|+.... --+.+...|..+..++.+.|++++|...|++. ..
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 44555554 34443 44456677788888888888888765 33456777888888888888888888888877 33
Q ss_pred CC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHH
Q 009066 338 KP-QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYA 387 (545)
Q Consensus 338 ~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~ 387 (545)
.| +...|..+..++...|++++|+..|+++++..|+++. .+.....+..
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~-~~~~~~~~~~ 137 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADAS-WSEIRQNAQI 137 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH-HHHHHHHHHH
Confidence 34 5677888888888889999999999998888888876 6665555543
No 106
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.48 E-value=8.2e-05 Score=75.92 Aligned_cols=238 Identities=15% Similarity=0.145 Sum_probs=122.4
Q ss_pred CCChhhHHHHHH--HHHcCCCCHHHHHHHHhcCCCCCeehHHHHHHHHHhCCCHHHHHHHHhhCC------------cCC
Q 009066 35 QPDVVSYNIMLS--CILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP------------EKN 100 (545)
Q Consensus 35 ~~~~~~~~~li~--~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~a~~~~~~~~------------~~~ 100 (545)
+-|.+|-.+|+. .|+.- |+.+.|.+-..-+. ....|..|.+.|.+..+++-|.-.+..|. +.+
T Consensus 723 ~Cd~~TRkaml~FSfyvti-G~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~ 799 (1416)
T KOG3617|consen 723 NCDESTRKAMLDFSFYVTI-GSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNG 799 (1416)
T ss_pred ccCHHHHHhhhceeEEEEe-ccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCC
Confidence 345555555553 34444 66666666555443 33456666666666666666666555554 111
Q ss_pred HhHHHHHHHHHHHcCChHHHHHHHhhCCCCCcccHHHHHHHhcchhhhccCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 009066 101 SVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLL 180 (545)
Q Consensus 101 ~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~ 180 (545)
...-....-.-...|.+++|..+|.+-..- ..|=..| -..|.+++|+++-+.=-+ + .=..||..-..
T Consensus 800 ~e~eakvAvLAieLgMlEeA~~lYr~ckR~-----DLlNKly-----Qs~g~w~eA~eiAE~~DR--i-HLr~Tyy~yA~ 866 (1416)
T KOG3617|consen 800 EEDEAKVAVLAIELGMLEEALILYRQCKRY-----DLLNKLY-----QSQGMWSEAFEIAETKDR--I-HLRNTYYNYAK 866 (1416)
T ss_pred cchhhHHHHHHHHHhhHHHHHHHHHHHHHH-----HHHHHHH-----HhcccHHHHHHHHhhccc--e-ehhhhHHHHHH
Confidence 122222333344556666666666554332 2233344 555666666655332111 1 11224444444
Q ss_pred HHhccCcHHHHHHHHHHHH----------hCC---------CCCCcccHHHHHHHHHhcCCHHHHHHHHHhccCCChhhH
Q 009066 181 GCSHLSSLQLGKQVHQLVF----------KSP---------LCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTW 241 (545)
Q Consensus 181 ~~~~~~~~~~a~~~~~~~~----------~~g---------~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~ 241 (545)
-+...++.+.|.++|+... +.. -..|...|.-...-.-..|+++.|+.+|....+ |
T Consensus 867 ~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D-----~ 941 (1416)
T KOG3617|consen 867 YLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD-----Y 941 (1416)
T ss_pred HHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh-----h
Confidence 4444455555555544321 110 012334444444445556777777777776543 4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHh
Q 009066 242 NAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSM 299 (545)
Q Consensus 242 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 299 (545)
-+++...|-+|+.++|-.+-++- -|......|.+.|...|++.+|..+|.+.
T Consensus 942 fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 942 FSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred hhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 55555556666666666655442 24445555666677777777776666544
No 107
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.47 E-value=1.6e-05 Score=73.56 Aligned_cols=181 Identities=16% Similarity=0.065 Sum_probs=128.0
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHHHhCCCCCCc---ccHHHHHHHHHhcCCHHHHHHHHHhccC--C-Chh---h
Q 009066 170 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDT---TALTPLISMYCKCGDLEDACKLFLEIQR--K-DVV---T 240 (545)
Q Consensus 170 pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~---~~~~~li~~y~~~g~~~~A~~~f~~~~~--~-~~~---~ 240 (545)
.....+......+...|+++.|...++.+.+... .+. ..+..+...|.+.|++++|...|+++.+ | +.. +
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYP-FSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 3556777788889999999999999999988642 222 4567789999999999999999999864 2 222 4
Q ss_pred HHHHHHHHHHc--------CChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHH
Q 009066 241 WNAMISGYAQH--------GKGEKALRLFDKMKDEGMKPDSI-TFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDH 311 (545)
Q Consensus 241 ~~~li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 311 (545)
+..+..++.+. |++++|++.|+++... .|+.. ....+.... .. .... ...
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~----~~------~~~~---------~~~ 168 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMD----YL------RNRL---------AGK 168 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHH----HH------HHHH---------HHH
Confidence 55566666654 7889999999999875 44432 222111110 00 0000 011
Q ss_pred HHHHHHHHhHcCCHHHHHHHHHhC----CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCC
Q 009066 312 YTCMVDLLGRAGKLVEAVDLIKKM----PFKP-QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNP 372 (545)
Q Consensus 312 ~~~li~~~~~~g~~~~A~~~~~~m----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p 372 (545)
...+.+.|.+.|++++|...+++. |-.| ....|..+..++...|++++|...++.+....|
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 235677889999999999988877 2223 346888999999999999999999888876655
No 108
>PF12854 PPR_1: PPR repeat
Probab=98.46 E-value=3.2e-07 Score=55.25 Aligned_cols=32 Identities=28% Similarity=0.484 Sum_probs=23.4
Q ss_pred CCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhC
Q 009066 304 GIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335 (545)
Q Consensus 304 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 335 (545)
|+.||..+|++||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 66777777777777777777777777777766
No 109
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.44 E-value=3.1e-05 Score=80.63 Aligned_cols=372 Identities=15% Similarity=0.116 Sum_probs=187.5
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHccCCC---CChhhHHHHHHHHHcCCCCHHHHHHHHhcCCCCC-----eehHHHHHHH
Q 009066 8 NWNSVLAGFAKQRGKLKDAQELFDKIPQ---PDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKD-----TASWNTMISG 79 (545)
Q Consensus 8 ~~~~li~~~~~~g~~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~~g~~~~A~~~~~~m~~~d-----~~~~~~li~~ 79 (545)
.|..|-..|...-+ ...|.+.|+..-+ .|..+|......|++. .+++.|..+.-...+.+ ...|....-.
T Consensus 494 af~~LG~iYrd~~D-m~RA~kCf~KAFeLDatdaeaaaa~adtyae~-~~we~a~~I~l~~~qka~a~~~k~nW~~rG~y 571 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSDD-MKRAKKCFDKAFELDATDAEAAAASADTYAEE-STWEEAFEICLRAAQKAPAFACKENWVQRGPY 571 (1238)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHhcCCchhhhhHHHHHHHhhcc-ccHHHHHHHHHHHhhhchHHHHHhhhhhcccc
Confidence 45555555555554 6666666665542 3444566666666666 66666666633222111 1223333444
Q ss_pred HHhCCCHHHHHHHHhhCCc---CCHhHHHHHHHHHHHcCChHHHHHHHhhCCCCCcccHHH-HHHHhcchhhhccCChHH
Q 009066 80 FVQKKNMAKARDLFLAMPE---KNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTA-MISGYMKFGYVENSWAED 155 (545)
Q Consensus 80 ~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~-li~~~~~~g~~~~g~~~~ 155 (545)
|.+.++...|+.-|+.... .|...|..|..+|..+|++..|.++|.+...-++.+|-. .-.+-.. ...|.+.+
T Consensus 572 yLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~e---cd~GkYke 648 (1238)
T KOG1127|consen 572 YLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVME---CDNGKYKE 648 (1238)
T ss_pred ccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHH---HHhhhHHH
Confidence 5566666666666665552 345566667777777777777777776655433322221 1111100 34566666
Q ss_pred HHHHHHHHHhC------CCCCCHHHHHHHHHHHhccCcHHHHHHHHHH-------HHhCCCCCCcccHHHHHHHHHhcCC
Q 009066 156 GLKLLRMMIGL------GIRPNASSLSSVLLGCSHLSSLQLGKQVHQL-------VFKSPLCKDTTALTPLISMYCKCGD 222 (545)
Q Consensus 156 A~~~~~~m~~~------~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~-------~~~~g~~~~~~~~~~li~~y~~~g~ 222 (545)
|+..+...... +..--..++..+...+...|-..++..+++. .+......+...|-.+.
T Consensus 649 ald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~as-------- 720 (1238)
T KOG1127|consen 649 ALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVAS-------- 720 (1238)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHh--------
Confidence 66666555432 1011112222222223333332233222222 22222122222222211
Q ss_pred HHHHHHHHHhccCCChhh--HHHHHHH-HHHcCCh---H---HHHHHHHHHHHcCCCCCHHHHHHHHHHHHc-------c
Q 009066 223 LEDACKLFLEIQRKDVVT--WNAMISG-YAQHGKG---E---KALRLFDKMKDEGMKPDSITFVALLLACNH-------A 286 (545)
Q Consensus 223 ~~~A~~~f~~~~~~~~~~--~~~li~~-~~~~g~~---~---~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~-------~ 286 (545)
+|..+|-... ||.+. +..++.. .-..+.. + -+.+.+-.-+. ...+..+|..|...|.+ .
T Consensus 721 --dac~~f~q~e-~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~WyNLGinylr~f~~l~et 795 (1238)
T KOG1127|consen 721 --DACYIFSQEE-PSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMYPWYNLGINYLRYFLLLGET 795 (1238)
T ss_pred --HHHHHHHHhc-ccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--HhhccchHHHHhHHHHHHHHHcCCc
Confidence 2223333332 22211 1111111 1111111 1 01111111111 11122333333322221 1
Q ss_pred -CcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhC--CCCCCHhHHHHHHHHHHhcCCHHHHHHH
Q 009066 287 -GLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM--PFKPQPAIFGTLLSACRVHKRLDLAEFA 363 (545)
Q Consensus 287 -g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~li~~~~~~g~~~~A~~~ 363 (545)
.+...|...+...++. -..+...|++|.-+ ...|.+.-|...|-+- ..+.+..+|..+...+.++.|++-|...
T Consensus 796 ~~~~~~Ai~c~KkaV~L--~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~a 872 (1238)
T KOG1127|consen 796 MKDACTAIRCCKKAVSL--CANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPA 872 (1238)
T ss_pred chhHHHHHHHHHHHHHH--hhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHH
Confidence 1234666666666542 23445556665544 6667888777776554 2234668899999999999999999999
Q ss_pred HHHHhcCCCCCCchhHHHHHHHHHHcCCchHHHHHHHH
Q 009066 364 AMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLS 401 (545)
Q Consensus 364 ~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 401 (545)
|.+...++|.+.. .+.....+-...|+.-++..+|.-
T Consensus 873 f~~~qSLdP~nl~-~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 873 FSSVQSLDPLNLV-QWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred HHhhhhcCchhhH-HHHHHHHhHHHHHHHHHHHHHHHh
Confidence 9999999999988 888888888888888888877765
No 110
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.43 E-value=0.0013 Score=64.45 Aligned_cols=395 Identities=11% Similarity=0.144 Sum_probs=222.3
Q ss_pred CCCCccHHHHHHHHHHhCCCChHHHHHHHccCCC--CC-hhhHHHHHHHHHcCCCCHHHHHHHHhcCC--CCCeehHHHH
Q 009066 2 NVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQ--PD-VVSYNIMLSCILLNSDDVVAAFDFFQRLP--IKDTASWNTM 76 (545)
Q Consensus 2 ~~~~~~~~~~li~~~~~~g~~~~~A~~~f~~~~~--~~-~~~~~~li~~~~~~~g~~~~A~~~~~~m~--~~d~~~~~~l 76 (545)
||-|+.+|+.||.-+... . .++++..++++.. |. ...|..-|..-... .+++....+|.+.. .-+...|..-
T Consensus 16 nP~di~sw~~lire~qt~-~-~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~s-kdfe~VEkLF~RCLvkvLnlDLW~lY 92 (656)
T KOG1914|consen 16 NPYDIDSWSQLIREAQTQ-P-IDKVRETYEQLVNVFPSSPRAWKLYIERELAS-KDFESVEKLFSRCLVKVLNLDLWKLY 92 (656)
T ss_pred CCccHHHHHHHHHHHccC-C-HHHHHHHHHHHhccCCCCcHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHhhHhHHHHH
Confidence 678999999999877766 7 9999999999884 43 44688889888888 89999999999877 3466667766
Q ss_pred HHHHHh-CCCHHHH----HHHHhhCC------cCCHhHHHHHHHH---------HHHcCChHHHHHHHhhCCCC---Cc-
Q 009066 77 ISGFVQ-KKNMAKA----RDLFLAMP------EKNSVSWSAMISG---------YIECGQLDKAVELFKVAPVK---SV- 132 (545)
Q Consensus 77 i~~~~~-~g~~~~a----~~~~~~~~------~~~~~~~~~li~~---------~~~~g~~~~A~~~f~~~~~~---~~- 132 (545)
|+--.+ .|+...+ .+.|+-.+ -.+...|+..++. |....+++..+++++++... |.
T Consensus 93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlE 172 (656)
T KOG1914|consen 93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLE 172 (656)
T ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHH
Confidence 654332 3333331 22222222 1233445555543 44455677778888776532 11
Q ss_pred ccHHHH------HHHhcchh--hhccCChHHHHHHHHHHHh--CCCCCCHHH---------------HHHHHHH------
Q 009066 133 VAWTAM------ISGYMKFG--YVENSWAEDGLKLLRMMIG--LGIRPNASS---------------LSSVLLG------ 181 (545)
Q Consensus 133 ~~~~~l------i~~~~~~g--~~~~g~~~~A~~~~~~m~~--~~~~pd~~t---------------~~~ll~~------ 181 (545)
..|+.. |....... .-+...+..|.+++++... .|+.-+..+ |..+|.-
T Consensus 173 kLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL 252 (656)
T KOG1914|consen 173 KLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPL 252 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCc
Confidence 112211 11000000 0112223334444444321 121111000 1111110
Q ss_pred -------------------------------------------HhccCc-------HHHHHHHHHHHHhCCCCCCcccHH
Q 009066 182 -------------------------------------------CSHLSS-------LQLGKQVHQLVFKSPLCKDTTALT 211 (545)
Q Consensus 182 -------------------------------------------~~~~~~-------~~~a~~~~~~~~~~g~~~~~~~~~ 211 (545)
+...|+ .+++..+++..+..-...+..+|.
T Consensus 253 ~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~ 332 (656)
T KOG1914|consen 253 RTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYF 332 (656)
T ss_pred ccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011111 122223333222211111111222
Q ss_pred HHHHHHHhc---CCHHHHHHHHHhccC----CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHH
Q 009066 212 PLISMYCKC---GDLEDACKLFLEIQR----KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKP-DSITFVALLLAC 283 (545)
Q Consensus 212 ~li~~y~~~---g~~~~A~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~ 283 (545)
++.+---.. ...+.....+++... .-..+|-..+..-.+..-.+.|..+|.+..+.+..+ +.....+++.-+
T Consensus 333 ~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~ 412 (656)
T KOG1914|consen 333 ALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYY 412 (656)
T ss_pred HHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHH
Confidence 111100000 012222333333322 123467777777777778889999999999888777 555666777655
Q ss_pred HccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhC---CCCCC--HhHHHHHHHHHHhcCCHH
Q 009066 284 NHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM---PFKPQ--PAIFGTLLSACRVHKRLD 358 (545)
Q Consensus 284 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~--~~~~~~li~~~~~~g~~~ 358 (545)
+ +++.+.|.++|+.-.+++| .++.--...++-+...++-..|..+|++. .+.|+ ..+|..++.--..-|+..
T Consensus 413 c-skD~~~AfrIFeLGLkkf~--d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~ 489 (656)
T KOG1914|consen 413 C-SKDKETAFRIFELGLKKFG--DSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLN 489 (656)
T ss_pred h-cCChhHHHHHHHHHHHhcC--CChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHH
Confidence 5 4788899999988777543 34455567888888899999999999887 22333 478999999999999999
Q ss_pred HHHHHHHHHhcCCCCCC---chhHHHHHHHHHHcCCchHHHHHHHHh
Q 009066 359 LAEFAAMNLFNLNPANA---AGCYVQLANIYAAMKKWDDVARIRLSM 402 (545)
Q Consensus 359 ~A~~~~~~~~~~~p~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m 402 (545)
.+.++-++....-|.+. ...-..+++-|.-.+....-..-++.|
T Consensus 490 si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 490 SILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELKFL 536 (656)
T ss_pred HHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHHhh
Confidence 99888887766554111 114556677777777766555555444
No 111
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.42 E-value=0.00013 Score=76.20 Aligned_cols=157 Identities=15% Similarity=0.226 Sum_probs=120.2
Q ss_pred CCHHHHHHHHHhccCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHhH
Q 009066 221 GDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV 300 (545)
Q Consensus 221 g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 300 (545)
+.++.|.+.-++.. ....|+.+..+-.+.|...+|++-|-+. -|...|..++.++++.|.+++-.+++.-..
T Consensus 1089 ~~ldRA~efAe~~n--~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaR 1160 (1666)
T KOG0985|consen 1089 GSLDRAYEFAERCN--EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMAR 1160 (1666)
T ss_pred hhHHHHHHHHHhhC--ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 44444444444443 3457999999999999999999988653 367789999999999999999999996655
Q ss_pred HhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHH
Q 009066 301 NDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYV 380 (545)
Q Consensus 301 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 380 (545)
++ .-.|..+ +.|+-+|++.+++.+-.+++.. ||..-......-|...|.++.|.-+|... + .|.
T Consensus 1161 kk-~~E~~id--~eLi~AyAkt~rl~elE~fi~g----pN~A~i~~vGdrcf~~~~y~aAkl~y~~v--------S-N~a 1224 (1666)
T KOG0985|consen 1161 KK-VREPYID--SELIFAYAKTNRLTELEEFIAG----PNVANIQQVGDRCFEEKMYEAAKLLYSNV--------S-NFA 1224 (1666)
T ss_pred Hh-hcCccch--HHHHHHHHHhchHHHHHHHhcC----CCchhHHHHhHHHhhhhhhHHHHHHHHHh--------h-hHH
Confidence 54 5555554 5799999999999998777653 78877888888888999999888888654 3 677
Q ss_pred HHHHHHHHcCCchHHHHHHHH
Q 009066 381 QLANIYAAMKKWDDVARIRLS 401 (545)
Q Consensus 381 ~l~~~~~~~g~~~~a~~~~~~ 401 (545)
.|+..+...|.+..|...-++
T Consensus 1225 ~La~TLV~LgeyQ~AVD~aRK 1245 (1666)
T KOG0985|consen 1225 KLASTLVYLGEYQGAVDAARK 1245 (1666)
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 788888888877776654433
No 112
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.42 E-value=2.5e-05 Score=69.52 Aligned_cols=152 Identities=11% Similarity=0.102 Sum_probs=109.4
Q ss_pred HHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHH
Q 009066 214 ISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGI 293 (545)
Q Consensus 214 i~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 293 (545)
+-.|...|+++.+....+.+..+. ..|...++.++++..+++..+.. +.|...|..+...+...|++++|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 456777777776655543332221 01112556677777777777653 446677888888888899999999
Q ss_pred HHHHHhHHhcCCCCCHHHHHHHHHH-HhHcCC--HHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 009066 294 QYFDSMVNDYGIAAKPDHYTCMVDL-LGRAGK--LVEAVDLIKKM-PFKP-QPAIFGTLLSACRVHKRLDLAEFAAMNLF 368 (545)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~--~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 368 (545)
..|++..+ -.+.+...+..+..+ |...|+ .++|.+++++. ...| +...+..+...+...|++++|+..+++++
T Consensus 94 ~a~~~Al~--l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL 171 (198)
T PRK10370 94 LAYRQALQ--LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVL 171 (198)
T ss_pred HHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99988875 234567788888886 467777 58899998887 4445 56788888889999999999999999999
Q ss_pred cCCCCCCc
Q 009066 369 NLNPANAA 376 (545)
Q Consensus 369 ~~~p~~~~ 376 (545)
++.|.+..
T Consensus 172 ~l~~~~~~ 179 (198)
T PRK10370 172 DLNSPRVN 179 (198)
T ss_pred hhCCCCcc
Confidence 98887764
No 113
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.41 E-value=9.5e-06 Score=68.28 Aligned_cols=95 Identities=11% Similarity=-0.123 Sum_probs=85.8
Q ss_pred HHHHHHHHHhHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHH
Q 009066 311 HYTCMVDLLGRAGKLVEAVDLIKKM-PFKP-QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAA 388 (545)
Q Consensus 311 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~ 388 (545)
.+..+...+...|++++|...|+.. ...| +...|..+..++...|++++|...|+++++++|++.. ++..++.++..
T Consensus 26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~-a~~~lg~~l~~ 104 (144)
T PRK15359 26 TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPE-PVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcH-HHHHHHHHHHH
Confidence 4667888899999999999999987 4445 6788999999999999999999999999999999998 99999999999
Q ss_pred cCCchHHHHHHHHhhhCC
Q 009066 389 MKKWDDVARIRLSMKENN 406 (545)
Q Consensus 389 ~g~~~~a~~~~~~m~~~~ 406 (545)
.|+.++|...++...+..
T Consensus 105 ~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 105 MGEPGLAREAFQTAIKMS 122 (144)
T ss_pred cCCHHHHHHHHHHHHHhC
Confidence 999999999999987643
No 114
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.40 E-value=0.00046 Score=70.71 Aligned_cols=69 Identities=6% Similarity=0.047 Sum_probs=33.6
Q ss_pred CCHHHHHHHHhcCCCCCeehHHHHHHHHHhCCCHHHHHHHHhhCCcC-CHhHHHHHHHHHHHcCChHHHHHHHhh
Q 009066 53 DDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEK-NSVSWSAMISGYIECGQLDKAVELFKV 126 (545)
Q Consensus 53 g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~f~~ 126 (545)
|-+++|..+|.+..+ |..|-..|-..|.+++|+++-+.--.- =..+|.....-+-..++.+.|++.|++
T Consensus 814 gMlEeA~~lYr~ckR-----~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK 883 (1416)
T KOG3617|consen 814 GMLEEALILYRQCKR-----YDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEK 883 (1416)
T ss_pred hhHHHHHHHHHHHHH-----HHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHh
Confidence 555666666555432 333334455556666666554432111 112444444444455566666666554
No 115
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.40 E-value=3.2e-05 Score=80.50 Aligned_cols=340 Identities=14% Similarity=0.101 Sum_probs=191.3
Q ss_pred CCHHHHHHHHhcCCCCCe---ehHHHHHHHHHhCCCHHHHHHHHhhCCcC---CHhHHHHHHHHHHHcCChHHHHHHHhh
Q 009066 53 DDVVAAFDFFQRLPIKDT---ASWNTMISGFVQKKNMAKARDLFLAMPEK---NSVSWSAMISGYIECGQLDKAVELFKV 126 (545)
Q Consensus 53 g~~~~A~~~~~~m~~~d~---~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~f~~ 126 (545)
.+...|+..|-+..+.|+ ..|..|...|...-+...|.+.|++..+- +...+..+.+.|++..+++.|..+.-.
T Consensus 472 K~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred hhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 346667766665554433 46788888887777888888888877643 456777788888888888888877543
Q ss_pred CCCCCc-----ccHHHHHHHhcchhhhccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhC
Q 009066 127 APVKSV-----VAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKS 201 (545)
Q Consensus 127 ~~~~~~-----~~~~~li~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 201 (545)
..+.+. ..|--..-.| .+.++...|+.-|+...+.. +-|...|..+..+|...|.+..|..+|..+...
T Consensus 552 ~~qka~a~~~k~nW~~rG~yy-----Lea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L 625 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYY-----LEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL 625 (1238)
T ss_pred HhhhchHHHHHhhhhhccccc-----cCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc
Confidence 333322 2233333334 67777777777777776643 336667777778888888888888877776655
Q ss_pred CCCCCcccHHHHHHHHHhcCCHHHHHHHHHhccCC----------ChhhHHHHHHHHHHcCChHHHHHHHHHHHH-----
Q 009066 202 PLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK----------DVVTWNAMISGYAQHGKGEKALRLFDKMKD----- 266 (545)
Q Consensus 202 g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~----------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----- 266 (545)
. |.+...---...+-+..|++.+|...+..+... -..++-.+...+.-.|-..+|.+.++.-++
T Consensus 626 r-P~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~ 704 (1238)
T KOG1127|consen 626 R-PLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVS 704 (1238)
T ss_pred C-cHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 3 122222222334455667777777776665421 112233333333333433344444333221
Q ss_pred --cCCCCCHHHHHHHHHHH-----------------------HccCcH---H---HHHHHHHHhHHhcCCCCCHHHHHHH
Q 009066 267 --EGMKPDSITFVALLLAC-----------------------NHAGLV---D---LGIQYFDSMVNDYGIAAKPDHYTCM 315 (545)
Q Consensus 267 --~g~~p~~~t~~~ll~a~-----------------------~~~g~~---~---~a~~~~~~~~~~~~~~~~~~~~~~l 315 (545)
.....|...|..+-.+| -..+.. | -|.+.+-.-. .+..++.+|..|
T Consensus 705 l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hl---sl~~~~~~WyNL 781 (1238)
T KOG1127|consen 705 LIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHL---SLAIHMYPWYNL 781 (1238)
T ss_pred HHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHH---HHhhccchHHHH
Confidence 11111111111111111 111111 1 1111111111 112223344444
Q ss_pred HHHHhH----cC----CHHHHHHHHHhC-CC-CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHH
Q 009066 316 VDLLGR----AG----KLVEAVDLIKKM-PF-KPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANI 385 (545)
Q Consensus 316 i~~~~~----~g----~~~~A~~~~~~m-~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~ 385 (545)
+.-|.+ +| +...|...+.+. .. ..+...|+.|.-. ..-|++.-|...|-+....+|.... +|..+.-.
T Consensus 782 Ginylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~-~W~NlgvL 859 (1238)
T KOG1127|consen 782 GINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHC-QWLNLGVL 859 (1238)
T ss_pred hHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchh-heecccee
Confidence 444433 11 233566666654 22 2455677777665 6667888888888888888888877 88888888
Q ss_pred HHHcCCchHHHHHHHHhhh
Q 009066 386 YAAMKKWDDVARIRLSMKE 404 (545)
Q Consensus 386 ~~~~g~~~~a~~~~~~m~~ 404 (545)
+.+..+++.|...|.+...
T Consensus 860 ~l~n~d~E~A~~af~~~qS 878 (1238)
T KOG1127|consen 860 VLENQDFEHAEPAFSSVQS 878 (1238)
T ss_pred EEecccHHHhhHHHHhhhh
Confidence 8888888888888877655
No 116
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=0.0003 Score=68.83 Aligned_cols=366 Identities=15% Similarity=0.091 Sum_probs=226.3
Q ss_pred CCCCCccHHHHHHHHHHhCCCChHHHHHHHccCC--CCCh-hhHHHHHHHHHcCCCCHHHHHHHHhcCC--CC-CeehHH
Q 009066 1 MNVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIP--QPDV-VSYNIMLSCILLNSDDVVAAFDFFQRLP--IK-DTASWN 74 (545)
Q Consensus 1 ~~~~~~~~~~~li~~~~~~g~~~~~A~~~f~~~~--~~~~-~~~~~li~~~~~~~g~~~~A~~~~~~m~--~~-d~~~~~ 74 (545)
+.|++.+.|..=..+|++.|+ +++|.+=-.+-. .|+- ..|+-.-.++... |++++|+.-|.+-. .| |...++
T Consensus 31 l~p~nhvlySnrsaa~a~~~~-~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~l-g~~~eA~~ay~~GL~~d~~n~~L~~ 108 (539)
T KOG0548|consen 31 LSPTNHVLYSNRSAAYASLGS-YEKALKDATKTRRLNPDWAKGYSRKGAALFGL-GDYEEAILAYSEGLEKDPSNKQLKT 108 (539)
T ss_pred cCCCccchhcchHHHHHHHhh-HHHHHHHHHHHHhcCCchhhHHHHhHHHHHhc-ccHHHHHHHHHHHhhcCCchHHHHH
Confidence 467789999999999999999 999987665554 3543 2467677777777 99999999999877 23 445666
Q ss_pred HHHHHHHhCCCHHHHHHHHh------hCC-cC------CHhHHHHHHH----------HHHHcCChHHHHHHHhh-----
Q 009066 75 TMISGFVQKKNMAKARDLFL------AMP-EK------NSVSWSAMIS----------GYIECGQLDKAVELFKV----- 126 (545)
Q Consensus 75 ~li~~~~~~g~~~~a~~~~~------~~~-~~------~~~~~~~li~----------~~~~~g~~~~A~~~f~~----- 126 (545)
-+..++... . ++.+.|. ... .| ....|..++. .|..-.++..|.-++..
T Consensus 109 gl~~a~~~~--~-~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~ 185 (539)
T KOG0548|consen 109 GLAQAYLED--Y-AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELL 185 (539)
T ss_pred hHHHhhhHH--H-HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCcccc
Confidence 666665111 0 1111111 110 00 0011111111 12221222223222210
Q ss_pred -----------CCCC------------Cc----------ccHHHHHHHhcchhhhccCChHHHHHHHHHHHhCCCCCCHH
Q 009066 127 -----------APVK------------SV----------VAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNAS 173 (545)
Q Consensus 127 -----------~~~~------------~~----------~~~~~li~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~pd~~ 173 (545)
+..| |. .....+.+.. -+..++..|++-+....... -+..
T Consensus 186 ~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaa-----ykkk~f~~a~q~y~~a~el~--~~it 258 (539)
T KOG0548|consen 186 FYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAA-----YKKKDFETAIQHYAKALELA--TDIT 258 (539)
T ss_pred ccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHH-----HHhhhHHHHHHHHHHHHhHh--hhhH
Confidence 0011 00 1244566666 67778888998888887654 3444
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhCCCCCC------cccHHHHHHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHH
Q 009066 174 SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKD------TTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISG 247 (545)
Q Consensus 174 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~------~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~ 247 (545)
-++....++...|.+.+....-...++.|...- .....-+..+|.+.++++.|...|++...+... -..
T Consensus 259 ~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt-----~~~ 333 (539)
T KOG0548|consen 259 YLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRT-----PDL 333 (539)
T ss_pred HHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC-----HHH
Confidence 455555667888887777766666665542210 011222455888889999999999986542111 112
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHH
Q 009066 248 YAQHGKGEKALRLFDKMKDEGMKPDSI-TFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLV 326 (545)
Q Consensus 248 ~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 326 (545)
..+....++++...+...-. .|... -...-...+.+.|++..|...+.++++. .+.|...|....-+|.+.|.+.
T Consensus 334 ls~lk~~Ek~~k~~e~~a~~--~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr--~P~Da~lYsNRAac~~kL~~~~ 409 (539)
T KOG0548|consen 334 LSKLKEAEKALKEAERKAYI--NPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKR--DPEDARLYSNRAACYLKLGEYP 409 (539)
T ss_pred HHHHHHHHHHHHHHHHHHhh--ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc--CCchhHHHHHHHHHHHHHhhHH
Confidence 22334455666555554432 33332 1222355677899999999999999874 3667899999999999999999
Q ss_pred HHHHHHHhC-CCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHH
Q 009066 327 EAVDLIKKM-PFKPQ-PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAA 388 (545)
Q Consensus 327 ~A~~~~~~m-~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~ 388 (545)
.|++-.+.. ...|+ ...|..-..++....+++.|...|.+.++.+|++.. ....+.++...
T Consensus 410 ~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e-~~~~~~rc~~a 472 (539)
T KOG0548|consen 410 EALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAE-AIDGYRRCVEA 472 (539)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHH-HHHHHHHHHHH
Confidence 998876655 33454 355666667777788999999999999999999875 44455554443
No 117
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.39 E-value=0.00066 Score=62.98 Aligned_cols=150 Identities=17% Similarity=0.078 Sum_probs=79.4
Q ss_pred HHHHHHHHHhccCC-----ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHH
Q 009066 223 LEDACKLFLEIQRK-----DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFD 297 (545)
Q Consensus 223 ~~~A~~~f~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 297 (545)
+.-|.+.|+-.-+. .+.--.+|.+.+.-..++++.+-++......=.. |...-..+..|.+..|++.+|.++|-
T Consensus 339 lKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~N-dD~Fn~N~AQAk~atgny~eaEelf~ 417 (557)
T KOG3785|consen 339 LKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTN-DDDFNLNLAQAKLATGNYVEAEELFI 417 (557)
T ss_pred HHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cchhhhHHHHHHHHhcChHHHHHHHh
Confidence 44455555544321 2233455555555556666666666665543222 22222245566666677777777665
Q ss_pred HhHHhcCCCCCHHHH-HHHHHHHhHcCCHHHHHHHHHhCCCCCCHhHHHHHH-HHHHhcCCHHHHHHHHHHHhcCCCCCC
Q 009066 298 SMVNDYGIAAKPDHY-TCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLL-SACRVHKRLDLAEFAAMNLFNLNPANA 375 (545)
Q Consensus 298 ~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li-~~~~~~g~~~~A~~~~~~~~~~~p~~~ 375 (545)
.+... .+ .+..+| ..|..+|.+++..+-|.+++-++.-..+..+.-.+| .-|-+.+.+--|-+.|..+..++|++.
T Consensus 418 ~is~~-~i-kn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~pE 495 (557)
T KOG3785|consen 418 RISGP-EI-KNKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTPE 495 (557)
T ss_pred hhcCh-hh-hhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCcc
Confidence 44321 11 233333 345566667777777777766664323333333333 356666666666666766666666653
No 118
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.39 E-value=2e-05 Score=77.47 Aligned_cols=222 Identities=12% Similarity=0.063 Sum_probs=170.4
Q ss_pred hccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHH
Q 009066 148 VENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC 227 (545)
Q Consensus 148 ~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 227 (545)
.++|+..+|.-.|+..++.+ +-+...|..|....+..++-..|+..+.+.++.. +.+..+.-+|.-.|...|.-..|.
T Consensus 296 m~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHHH
Confidence 78899999999999998875 4467789999999999999999999999999876 556778888889999999999999
Q ss_pred HHHHhccCCC-hhhHHHHH---------HHHHHcCChHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHccCcHHHHHHHH
Q 009066 228 KLFLEIQRKD-VVTWNAMI---------SGYAQHGKGEKALRLFDKMKD-EGMKPDSITFVALLLACNHAGLVDLGIQYF 296 (545)
Q Consensus 228 ~~f~~~~~~~-~~~~~~li---------~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 296 (545)
+.|+.-.... ...|.... ..+..........++|-++.. .+..+|......|--.|--.|.++.|...|
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf 453 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCF 453 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHH
Confidence 9998763210 00110000 111222234455666666654 453456666666666678889999999999
Q ss_pred HHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhC-CCCCCH-hHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC
Q 009066 297 DSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKPQP-AIFGTLLSACRVHKRLDLAEFAAMNLFNLNPA 373 (545)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~ 373 (545)
+..... -+-|...||-|...++...+.++|+..|++. .++|+- .++..|.-.|...|.+++|...|-.++.+.+.
T Consensus 454 ~~AL~v--~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 454 EAALQV--KPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred HHHHhc--CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence 999863 2445788999999999999999999999988 778875 68888999999999999999999888776544
No 119
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.39 E-value=3.7e-05 Score=81.05 Aligned_cols=191 Identities=9% Similarity=0.048 Sum_probs=139.6
Q ss_pred HHHHHHHHhccCcHHHH-HHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhcc---CCChhhHHHHHHHHHH
Q 009066 175 LSSVLLGCSHLSSLQLG-KQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ---RKDVVTWNAMISGYAQ 250 (545)
Q Consensus 175 ~~~ll~~~~~~~~~~~a-~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~ 250 (545)
...+=.+.+..|..+++ +++++++.+ ++...+......++..-..... ..++..+-.|.....+
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~ 98 (694)
T PRK15179 31 LDLLEAALAEPGESEEAGRELLQQARQ------------VLERHAAVHKPAAALPELLDYVRRYPHTELFQVLVARALEA 98 (694)
T ss_pred HhHHHHHhcCcccchhHHHHHHHHHHH------------HHHHhhhhcchHhhHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 33333445666665554 677777653 3443333333333222222211 1357888889999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHH
Q 009066 251 HGKGEKALRLFDKMKDEGMKPDSI-TFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAV 329 (545)
Q Consensus 251 ~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 329 (545)
.|.+++|..+++...+ ..||.. ....+...+.+.+.+++|...+++... .-+.+......+..++.+.|++++|.
T Consensus 99 ~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~~a~~l~~~g~~~~A~ 174 (694)
T PRK15179 99 AHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILLEAKSWDEIGQSEQAD 174 (694)
T ss_pred cCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHHHHHHHHHhcchHHHH
Confidence 9999999999999998 467654 566777899999999999999999886 44556788889999999999999999
Q ss_pred HHHHhC-CCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHH
Q 009066 330 DLIKKM-PFKPQ-PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQL 382 (545)
Q Consensus 330 ~~~~~m-~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l 382 (545)
++|++. ...|+ ...|.++..++...|+.++|...|+++++...+... .|+.+
T Consensus 175 ~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~-~~~~~ 228 (694)
T PRK15179 175 ACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGAR-KLTRR 228 (694)
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchH-HHHHH
Confidence 999998 23344 688999999999999999999999999887655443 44433
No 120
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.39 E-value=0.00036 Score=64.45 Aligned_cols=300 Identities=11% Similarity=0.052 Sum_probs=203.8
Q ss_pred HHHHHHHhCCCChHHHHHHHccCCCCChhhHHHHHH---HHHcCCCCHHHHHHHHhcCC--CCCeeh-HHHHHHHHHhCC
Q 009066 11 SVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLS---CILLNSDDVVAAFDFFQRLP--IKDTAS-WNTMISGFVQKK 84 (545)
Q Consensus 11 ~li~~~~~~g~~~~~A~~~f~~~~~~~~~~~~~li~---~~~~~~g~~~~A~~~~~~m~--~~d~~~-~~~li~~~~~~g 84 (545)
-|-+.+...|+ +.+|+.-|....+-|+-.|-++.+ .|+.. |+-..|+.=|.+.. +||-.. --.-...+.+.|
T Consensus 43 ElGk~lla~~Q-~sDALt~yHaAve~dp~~Y~aifrRaT~yLAm-Gksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~G 120 (504)
T KOG0624|consen 43 ELGKELLARGQ-LSDALTHYHAAVEGDPNNYQAIFRRATVYLAM-GKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQG 120 (504)
T ss_pred HHHHHHHHhhh-HHHHHHHHHHHHcCCchhHHHHHHHHHHHhhh-cCCccchhhHHHHHhcCccHHHHHHHhchhhhhcc
Confidence 34556666788 999999999888777777776653 56666 77777777777766 555321 122235678999
Q ss_pred CHHHHHHHHhhCCcCCHhHHHHHHHHHHHcCChHHHHHHHhhCCCCCcccHHHHHHHhcchhhhccCChHHHHHHHHHHH
Q 009066 85 NMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI 164 (545)
Q Consensus 85 ~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~g~~~~A~~~~~~m~ 164 (545)
.+++|..-|+.++..++. -+....++.+.-..++-+.+. ..+..+ ..+|+...|++....++
T Consensus 121 ele~A~~DF~~vl~~~~s-~~~~~eaqskl~~~~e~~~l~------------~ql~s~-----~~~GD~~~ai~~i~~ll 182 (504)
T KOG0624|consen 121 ELEQAEADFDQVLQHEPS-NGLVLEAQSKLALIQEHWVLV------------QQLKSA-----SGSGDCQNAIEMITHLL 182 (504)
T ss_pred cHHHHHHHHHHHHhcCCC-cchhHHHHHHHHhHHHHHHHH------------HHHHHH-----hcCCchhhHHHHHHHHH
Confidence 999999999998854331 112223333333333333322 233344 56788888888888887
Q ss_pred hCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhccCCChh-----
Q 009066 165 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVV----- 239 (545)
Q Consensus 165 ~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~----- 239 (545)
+-. +.|...+..-..+|...|.+..|..=+..+-+.. ..+....-.+-..+...|+.+.++....+..+-|+.
T Consensus 183 Ei~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf 260 (504)
T KOG0624|consen 183 EIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCF 260 (504)
T ss_pred hcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHH
Confidence 642 4477777777778888888888877777776654 234444455677778888888888888777653221
Q ss_pred -hHHHH---------HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHH---HHHHHHHHccCcHHHHHHHHHHhHHhcCCC
Q 009066 240 -TWNAM---------ISGYAQHGKGEKALRLFDKMKDEGMKPDSITF---VALLLACNHAGLVDLGIQYFDSMVNDYGIA 306 (545)
Q Consensus 240 -~~~~l---------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~---~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 306 (545)
.|-.+ +......+++.++++..+...+.......+++ ..+-.++...+.+.+|++...++.. +.
T Consensus 261 ~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~---~d 337 (504)
T KOG0624|consen 261 PFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD---ID 337 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh---cC
Confidence 12111 22345678899999999888876444333443 3455667788999999999988874 45
Q ss_pred CC-HHHHHHHHHHHhHcCCHHHHHHHHHhC
Q 009066 307 AK-PDHYTCMVDLLGRAGKLVEAVDLIKKM 335 (545)
Q Consensus 307 ~~-~~~~~~li~~~~~~g~~~~A~~~~~~m 335 (545)
|+ +.++.--.++|.-...+++|+.-|+..
T Consensus 338 ~~dv~~l~dRAeA~l~dE~YD~AI~dye~A 367 (504)
T KOG0624|consen 338 PDDVQVLCDRAEAYLGDEMYDDAIHDYEKA 367 (504)
T ss_pred chHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 55 889988999999999999999999887
No 121
>PLN02789 farnesyltranstransferase
Probab=98.38 E-value=0.00021 Score=68.41 Aligned_cols=200 Identities=13% Similarity=0.084 Sum_probs=127.8
Q ss_pred hccCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccC-cHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCH--
Q 009066 148 VENSWAEDGLKLLRMMIGLGIRPN-ASSLSSVLLGCSHLS-SLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDL-- 223 (545)
Q Consensus 148 ~~~g~~~~A~~~~~~m~~~~~~pd-~~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~-- 223 (545)
...++.++|+.+..++++. .|+ ...|+.--.++...+ .++++...+..+++.. +.+..+|+....++.+.|+.
T Consensus 48 ~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~ 124 (320)
T PLN02789 48 ASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAA 124 (320)
T ss_pred HcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhh
Confidence 5667778888888887764 343 334554444555556 5678888888877765 34455566555555566653
Q ss_pred HHHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc---Cc----HHHHH
Q 009066 224 EDACKLFLEIQR---KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHA---GL----VDLGI 293 (545)
Q Consensus 224 ~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~---g~----~~~a~ 293 (545)
+++..+++++.+ +|..+|+.....+...|+++++++.++++++.++. |...|+.....+.+. |. .++..
T Consensus 125 ~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el 203 (320)
T PLN02789 125 NKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSEL 203 (320)
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHH
Confidence 567777777664 46778888888888888899999999998886544 444555444444333 22 24566
Q ss_pred HHHHHhHHhcCCCCCHHHHHHHHHHHhHc----CCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHh
Q 009066 294 QYFDSMVNDYGIAAKPDHYTCMVDLLGRA----GKLVEAVDLIKKM-PFKP-QPAIFGTLLSACRV 353 (545)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~ 353 (545)
++...++. ..+-+...|+-+..+|... ++..+|.+++.+. ...| +......|+..|+.
T Consensus 204 ~y~~~aI~--~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 204 KYTIDAIL--ANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHH--hCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence 66655554 2355667777777777663 3456677777765 3333 45566777777764
No 122
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.37 E-value=7e-05 Score=66.75 Aligned_cols=154 Identities=14% Similarity=0.137 Sum_probs=85.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhH
Q 009066 242 NAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGR 321 (545)
Q Consensus 242 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 321 (545)
..+-..+...|+-+.+..+..+.... ..-|............+.|++.+|...+.+... .-++|...|+.+.-+|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHH
Confidence 33444455555555555555543321 111222333355555566666666666666554 445556666666666666
Q ss_pred cCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchHHHHHH
Q 009066 322 AGKLVEAVDLIKKM-PFKP-QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIR 399 (545)
Q Consensus 322 ~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~ 399 (545)
.|++++|..-|.+. .+.| +....+.|...+...|+.+.|+.++.......+.++. .-..|..+-...|++++|..+-
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~-v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 147 LGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSR-VRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchH-HHHHHHHHHhhcCChHHHHhhc
Confidence 66666666655554 2223 3455566666666666666666666666665555555 5556666666666666665543
No 123
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.33 E-value=4.6e-05 Score=67.91 Aligned_cols=134 Identities=16% Similarity=0.123 Sum_probs=113.5
Q ss_pred CCCHHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhC--CCCCCHhHHHHH
Q 009066 270 KPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM--PFKPQPAIFGTL 347 (545)
Q Consensus 270 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~l 347 (545)
.|+......+-.++...|+-+....+...... ..+.+......++....+.|++.+|...|++. +-.+|...|+.+
T Consensus 63 ~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~l 140 (257)
T COG5010 63 NPEDLSIAKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLL 140 (257)
T ss_pred CcchHHHHHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHH
Confidence 45443335566778888888888888877654 34556677778999999999999999999998 444688999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchHHHHHHHHhhhCC
Q 009066 348 LSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENN 406 (545)
Q Consensus 348 i~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 406 (545)
..+|.+.|+++.|...|.+.+++.|+++. .++.|+..|.-.|+.++|..++......+
T Consensus 141 gaaldq~Gr~~~Ar~ay~qAl~L~~~~p~-~~nNlgms~~L~gd~~~A~~lll~a~l~~ 198 (257)
T COG5010 141 GAALDQLGRFDEARRAYRQALELAPNEPS-IANNLGMSLLLRGDLEDAETLLLPAYLSP 198 (257)
T ss_pred HHHHHHccChhHHHHHHHHHHHhccCCch-hhhhHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999998 99999999999999999999998877654
No 124
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.32 E-value=1.4e-05 Score=66.39 Aligned_cols=119 Identities=11% Similarity=0.049 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHhHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHH
Q 009066 309 PDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKP-QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIY 386 (545)
Q Consensus 309 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~ 386 (545)
....-.+...+...|++++|.++|+-+ .+.| +..-|-.|...+...|++++|+..|..+..++|+++. ++..++.++
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~-~~~~ag~c~ 113 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQ-APWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCch-HHHHHHHHH
Confidence 344556677778899999999999987 3445 5678899999999999999999999999999999999 999999999
Q ss_pred HHcCCchHHHHHHHHhhhCCCccCCceeEEEECCEEEEEecCCCCCCChHHHHHHHHHHHHHHHH
Q 009066 387 AAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKL 451 (545)
Q Consensus 387 ~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~m~~ 451 (545)
...|+.+.|++.|+...... + .+|+-.++..+++..++.+.+
T Consensus 114 L~lG~~~~A~~aF~~Ai~~~---------------------~--~~~~~~~l~~~A~~~L~~l~~ 155 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRIC---------------------G--EVSEHQILRQRAEKMLQQLSD 155 (157)
T ss_pred HHcCCHHHHHHHHHHHHHHh---------------------c--cChhHHHHHHHHHHHHHHhhc
Confidence 99999999999999876532 1 246667777777776666543
No 125
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.31 E-value=4e-05 Score=77.39 Aligned_cols=194 Identities=13% Similarity=0.082 Sum_probs=98.5
Q ss_pred CCCCcccHHHHHHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 009066 203 LCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA 282 (545)
Q Consensus 203 ~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 282 (545)
++|--..-..+...+.++|-...|..+|++. ..|...|.+|+..|+..+|..+..+-.+ -+||..-|..+...
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDV 466 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhh
Confidence 3444444455556666666666666666543 2455556666666666666666555554 24555555555555
Q ss_pred HHccCcHHHHHHHHHHhHHh--c------------------------CCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhC-
Q 009066 283 CNHAGLVDLGIQYFDSMVND--Y------------------------GIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM- 335 (545)
Q Consensus 283 ~~~~g~~~~a~~~~~~~~~~--~------------------------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m- 335 (545)
.....-+++|.++++....+ + --+....+|-.+.-+..+.++.+.|.+.|...
T Consensus 467 ~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcv 546 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCV 546 (777)
T ss_pred ccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHh
Confidence 44444455555544433221 0 11222344444444445555555555555443
Q ss_pred CCCCCH-hHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchHHHHHHHHhhh
Q 009066 336 PFKPQP-AIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKE 404 (545)
Q Consensus 336 ~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 404 (545)
...||. ..||.+-.+|.+.|+..+|...+.++++-+-.+.. .+..-.-...+.|.|++|.+.+.++.+
T Consensus 547 tL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~-iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 547 TLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQ-IWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred hcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCe-eeechhhhhhhcccHHHHHHHHHHHHH
Confidence 333432 45555555555555555555555555554433333 444444444555555555555555543
No 126
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.29 E-value=0.00022 Score=75.41 Aligned_cols=142 Identities=11% Similarity=0.067 Sum_probs=117.6
Q ss_pred CCCCcccHHHHHHHHHhcCCHHHHHHHHHhccC--C-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHH-HHH
Q 009066 203 LCKDTTALTPLISMYCKCGDLEDACKLFLEIQR--K-DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSIT-FVA 278 (545)
Q Consensus 203 ~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ 278 (545)
.+.++..+-.|.......|.+++|..+++...+ | +...+..++..+.+.+++++|+..+++.... .|+..+ ...
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHH
Confidence 456688888899999999999999999999875 4 5667888999999999999999999999985 566554 455
Q ss_pred HHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhC--CCCCCHhHHHHHH
Q 009066 279 LLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM--PFKPQPAIFGTLL 348 (545)
Q Consensus 279 ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~li 348 (545)
+..++.+.|++++|..+|+++.. ..+-+...+..+..++...|+.++|...|++. ...|....|+.++
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~--~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~ 229 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSR--QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL 229 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH
Confidence 66788899999999999999986 33455788999999999999999999999988 3335555655554
No 127
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.28 E-value=0.0068 Score=63.24 Aligned_cols=380 Identities=13% Similarity=0.142 Sum_probs=214.1
Q ss_pred CCChHHHHHHHccCC--CCChhhHHHHHHH--HHcCCCCHHHHHHHHhcCC---CCCeehHHHHHHHHHhCCCHHHHHHH
Q 009066 20 RGKLKDAQELFDKIP--QPDVVSYNIMLSC--ILLNSDDVVAAFDFFQRLP---IKDTASWNTMISGFVQKKNMAKARDL 92 (545)
Q Consensus 20 g~~~~~A~~~f~~~~--~~~~~~~~~li~~--~~~~~g~~~~A~~~~~~m~---~~d~~~~~~li~~~~~~g~~~~a~~~ 92 (545)
++ +.+|.+..+++. .||.. |...+.+ ..+. |+.++|..+++... ..|..|..++-..|...|+.++|..+
T Consensus 23 ~q-fkkal~~~~kllkk~Pn~~-~a~vLkaLsl~r~-gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~ 99 (932)
T KOG2053|consen 23 SQ-FKKALAKLGKLLKKHPNAL-YAKVLKALSLFRL-GKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHL 99 (932)
T ss_pred HH-HHHHHHHHHHHHHHCCCcH-HHHHHHHHHHHHh-cCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHH
Confidence 55 777877777765 46654 3334443 3566 99999999988776 34778999999999999999999999
Q ss_pred HhhCCc--CCHhHHHHHHHHHHHcCChHH----HHHHHhhCCCCCcccHHHHHHHhcchhhhcc-----CChHHHHHHHH
Q 009066 93 FLAMPE--KNSVSWSAMISGYIECGQLDK----AVELFKVAPVKSVVAWTAMISGYMKFGYVEN-----SWAEDGLKLLR 161 (545)
Q Consensus 93 ~~~~~~--~~~~~~~~li~~~~~~g~~~~----A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~-----g~~~~A~~~~~ 161 (545)
|++... |+......+..+|.+-+.+.+ |.+++...+++--..|+.+ +.+...-.... --..-|.+.++
T Consensus 100 Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~-Slilqs~~~~~~~~~~i~l~LA~~m~~ 178 (932)
T KOG2053|consen 100 YERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVI-SLILQSIFSENELLDPILLALAEKMVQ 178 (932)
T ss_pred HHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHH-HHHHHhccCCcccccchhHHHHHHHHH
Confidence 999884 556666777788888877654 6777887766655566554 22211000000 01123555666
Q ss_pred HHHhCC-CCCCHHHHHHHHHHHhccCcHHHHHHHHHH-HHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhccCCChh
Q 009066 162 MMIGLG-IRPNASSLSSVLLGCSHLSSLQLGKQVHQL-VFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVV 239 (545)
Q Consensus 162 ~m~~~~-~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~-~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~ 239 (545)
.+.+.+ -.-+..-...-+......|..++|..++.. ..+.-...+...-+.-++.+.+++++.+-.++-.++..++..
T Consensus 179 ~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~D 258 (932)
T KOG2053|consen 179 KLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGND 258 (932)
T ss_pred HHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCc
Confidence 666543 111222222233345677888999888843 333333344555566788888888888877766665543211
Q ss_pred hHHHHHHHHH----------------HcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH---HccCcHHHHHHHHHHhH
Q 009066 240 TWNAMISGYA----------------QHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC---NHAGLVDLGIQYFDSMV 300 (545)
Q Consensus 240 ~~~~li~~~~----------------~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~---~~~g~~~~a~~~~~~~~ 300 (545)
-|...+..+. ..+..+...+..++...... ...|.+-+.+. -.-|+.+++...|-
T Consensus 259 dy~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~---Rgp~LA~lel~kr~~~~gd~ee~~~~y~--- 332 (932)
T KOG2053|consen 259 DYKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKS---RGPYLARLELDKRYKLIGDSEEMLSYYF--- 332 (932)
T ss_pred chHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccc---cCcHHHHHHHHHHhcccCChHHHHHHHH---
Confidence 1333222211 11122222222222221100 01111111111 12244444322221
Q ss_pred HhcCCCC------------------------------CHH-------HHHHHHHHHhHcCCH-----HHHHHHHHhC---
Q 009066 301 NDYGIAA------------------------------KPD-------HYTCMVDLLGRAGKL-----VEAVDLIKKM--- 335 (545)
Q Consensus 301 ~~~~~~~------------------------------~~~-------~~~~li~~~~~~g~~-----~~A~~~~~~m--- 335 (545)
+++|..| +.. -+.+.+..-.-.|.+ +.-..++.+.
T Consensus 333 ~kfg~kpcc~~Dl~~yl~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ 412 (932)
T KOG2053|consen 333 KKFGDKPCCAIDLNHYLGHLNIDQLKSLMSKLVLADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLKLT 412 (932)
T ss_pred HHhCCCcHhHhhHHHhhccCCHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHH
Confidence 1112111 111 022222222233321 1112222111
Q ss_pred ---C------CCCCH---------hHHHHHHHHHHhcCCHH---HHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchH
Q 009066 336 ---P------FKPQP---------AIFGTLLSACRVHKRLD---LAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDD 394 (545)
Q Consensus 336 ---~------~~p~~---------~~~~~li~~~~~~g~~~---~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~ 394 (545)
+ .-|.. .+.+.|+..+.+.++.. +|+-+++..+...|.+.. +-..|+.+|.-.|-+..
T Consensus 413 ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~-~KLlLiriY~~lGa~p~ 491 (932)
T KOG2053|consen 413 YEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQ-TKLLLIRIYSYLGAFPD 491 (932)
T ss_pred HhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHH-HHHHHHHHHHHhcCChh
Confidence 1 11221 24567888898888766 677788888889999887 88899999999999999
Q ss_pred HHHHHHHhhhCCCccC
Q 009066 395 VARIRLSMKENNVVKM 410 (545)
Q Consensus 395 a~~~~~~m~~~~~~~~ 410 (545)
|.+.++.+.-+.|..+
T Consensus 492 a~~~y~tLdIK~IQ~D 507 (932)
T KOG2053|consen 492 AYELYKTLDIKNIQTD 507 (932)
T ss_pred HHHHHHhcchHHhhhc
Confidence 9999999877666543
No 128
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.27 E-value=4.1e-05 Score=77.27 Aligned_cols=156 Identities=18% Similarity=0.170 Sum_probs=124.4
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHH
Q 009066 240 TWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLL 319 (545)
Q Consensus 240 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 319 (545)
.-..+...+...|-...|+.+|++... +..++.+|...|+..+|..+..+..++ +|++..|..+.|..
T Consensus 400 ~q~~laell~slGitksAl~I~Erlem---------w~~vi~CY~~lg~~~kaeei~~q~lek---~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERLEM---------WDPVILCYLLLGQHGKAEEINRQELEK---DPDPRLYCLLGDVL 467 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhHHH---------HHHHHHHHHHhcccchHHHHHHHHhcC---CCcchhHHHhhhhc
Confidence 344567788899999999999998754 445677888889999999988777653 88888888888765
Q ss_pred hHcCCHHHHHHH----------------------------HHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 009066 320 GRAGKLVEAVDL----------------------------IKKM-PFKP-QPAIFGTLLSACRVHKRLDLAEFAAMNLFN 369 (545)
Q Consensus 320 ~~~g~~~~A~~~----------------------------~~~m-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 369 (545)
...--+++|.++ ++.- .+.| ...+|-.+..+..+.++++.|.+.|.....
T Consensus 468 ~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvt 547 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVT 547 (777)
T ss_pred cChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhh
Confidence 544444444444 4322 2333 346788888888999999999999999999
Q ss_pred CCCCCCchhHHHHHHHHHHcCCchHHHHHHHHhhhCCCc
Q 009066 370 LNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVV 408 (545)
Q Consensus 370 ~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 408 (545)
++|++.. +|+.+..+|.+.|+-.+|.+.+++..+.+..
T Consensus 548 L~Pd~~e-aWnNls~ayi~~~~k~ra~~~l~EAlKcn~~ 585 (777)
T KOG1128|consen 548 LEPDNAE-AWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ 585 (777)
T ss_pred cCCCchh-hhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC
Confidence 9999998 9999999999999999999999999887743
No 129
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.23 E-value=0.00026 Score=62.66 Aligned_cols=169 Identities=13% Similarity=0.158 Sum_probs=118.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhccCCChhhHHHH---HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 009066 211 TPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAM---ISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG 287 (545)
Q Consensus 211 ~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g 287 (545)
..+.-+...+|+.+.|..+++.+..+-+.++... ..-+-..|++++|+++++..++.. +.|.+++.--+...-..|
T Consensus 56 EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~G 134 (289)
T KOG3060|consen 56 EQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQG 134 (289)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcC
Confidence 3344444556777777777776654222221111 112345788999999999998875 446667766665666677
Q ss_pred cHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHh---cCCHHHHHH
Q 009066 288 LVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKP-QPAIFGTLLSACRV---HKRLDLAEF 362 (545)
Q Consensus 288 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~---~g~~~~A~~ 362 (545)
..-+|++-+....+ .+..|.+.|.-|.+.|...|++++|.-.++++ -+.| ++..+..+...+-- ..+.+.|.+
T Consensus 135 K~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ark 212 (289)
T KOG3060|consen 135 KNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARK 212 (289)
T ss_pred CcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 77788888888877 56889999999999999999999999999998 3345 45556666655433 346778999
Q ss_pred HHHHHhcCCCCCCchhHHHHH
Q 009066 363 AAMNLFNLNPANAAGCYVQLA 383 (545)
Q Consensus 363 ~~~~~~~~~p~~~~~~~~~l~ 383 (545)
.|.+.+++.|.+.. .+..+.
T Consensus 213 yy~~alkl~~~~~r-al~GI~ 232 (289)
T KOG3060|consen 213 YYERALKLNPKNLR-ALFGIY 232 (289)
T ss_pred HHHHHHHhChHhHH-HHHHHH
Confidence 99999999996544 444433
No 130
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.21 E-value=0.00027 Score=75.55 Aligned_cols=212 Identities=10% Similarity=0.148 Sum_probs=136.7
Q ss_pred ccHHHHHHHhcchhhhccCChHHHHHHHHHHHhCCCCCCHHHHHHH-HHHHhccCcHHHHHHHHHHHHhCCCCCCcccHH
Q 009066 133 VAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSV-LLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALT 211 (545)
Q Consensus 133 ~~~~~li~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~l-l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 211 (545)
..|..|+..| ...+++++|.++.+...+. .|+...+..+ ...+.+.++.+.+..+
T Consensus 32 ~a~~~Li~~~-----~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv----------------- 87 (906)
T PRK14720 32 KELDDLIDAY-----KSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL----------------- 87 (906)
T ss_pred HHHHHHHHHH-----HhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------------
Confidence 5677888888 8888888888888866654 5555433222 2244555554444333
Q ss_pred HHHHHHHhcCCHHHHHHHHHhccC--CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcH
Q 009066 212 PLISMYCKCGDLEDACKLFLEIQR--KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLV 289 (545)
Q Consensus 212 ~li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 289 (545)
.+++......++.-...+.+.|.. .+-.++-.+..+|-+.|+.++|...|+++++.. +-|....+.+...++.. ++
T Consensus 88 ~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL 165 (906)
T PRK14720 88 NLIDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DK 165 (906)
T ss_pred hhhhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hH
Confidence 233333333333333333333332 233466677888888888888888888888865 33566777777777777 88
Q ss_pred HHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhC----------------------CCCCCHhHHHHH
Q 009066 290 DLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM----------------------PFKPQPAIFGTL 347 (545)
Q Consensus 290 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----------------------~~~p~~~~~~~l 347 (545)
++|.+++.+.+.. |...+++.++.+++.++ +...-+.++--+
T Consensus 166 ~KA~~m~~KAV~~----------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l 229 (906)
T PRK14720 166 EKAITYLKKAIYR----------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDL 229 (906)
T ss_pred HHHHHHHHHHHHH----------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHH
Confidence 8888887776653 22233333333333333 222334455666
Q ss_pred HHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHH
Q 009066 348 LSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYA 387 (545)
Q Consensus 348 i~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~ 387 (545)
-.-|...++++++..+++.+++.+|.+.. +...++.+|.
T Consensus 230 ~~~y~~~~~~~~~i~iLK~iL~~~~~n~~-a~~~l~~~y~ 268 (906)
T PRK14720 230 YEPYKALEDWDEVIYILKKILEHDNKNNK-AREELIRFYK 268 (906)
T ss_pred HHHHhhhhhhhHHHHHHHHHHhcCCcchh-hHHHHHHHHH
Confidence 67888999999999999999999999987 8888888886
No 131
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.19 E-value=0.00024 Score=68.87 Aligned_cols=177 Identities=18% Similarity=0.122 Sum_probs=122.4
Q ss_pred CHHHHHHHHHhccC------CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHH
Q 009066 222 DLEDACKLFLEIQR------KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQY 295 (545)
Q Consensus 222 ~~~~A~~~f~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 295 (545)
++.++...-+.++. ++...+...+.+.........+..++-+-.+ ..-...-|..-+ .....|..+.|+..
T Consensus 252 RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~aa~YG~A~-~~~~~~~~d~A~~~ 328 (484)
T COG4783 252 RIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSK--RGGLAAQYGRAL-QTYLAGQYDEALKL 328 (484)
T ss_pred HHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhC--ccchHHHHHHHH-HHHHhcccchHHHH
Confidence 45555555566653 3444555555544433322233322222221 111223333333 34567888999999
Q ss_pred HHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhC-CCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC
Q 009066 296 FDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKPQ-PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPA 373 (545)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~ 373 (545)
++.+.+ ..+.|+.......+.+.+.++.++|.+.++++ ...|+ ...+-++..++.+.|++.+|+.++......+|+
T Consensus 329 l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~ 406 (484)
T COG4783 329 LQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPE 406 (484)
T ss_pred HHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Confidence 988886 44566777778889999999999999999888 55566 567788888999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHcCCchHHHHHHHHhhh
Q 009066 374 NAAGCYVQLANIYAAMKKWDDVARIRLSMKE 404 (545)
Q Consensus 374 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 404 (545)
++. .|..|+.+|...|+..++...+.++..
T Consensus 407 dp~-~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 407 DPN-GWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred Cch-HHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 988 899999999999998888888776643
No 132
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.19 E-value=3.1e-06 Score=51.67 Aligned_cols=34 Identities=44% Similarity=0.859 Sum_probs=31.5
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC
Q 009066 239 VTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPD 272 (545)
Q Consensus 239 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 272 (545)
.+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 4799999999999999999999999999999997
No 133
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.17 E-value=0.00011 Score=71.91 Aligned_cols=126 Identities=13% Similarity=0.130 Sum_probs=96.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHH
Q 009066 211 TPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVD 290 (545)
Q Consensus 211 ~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 290 (545)
.+|+..+...++++.|..+|+++.+.++..+..++..+...++-.+|++++.+..... +-|...+..-...|.+.++.+
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~~~ 251 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKKYE 251 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHH
Confidence 3456666667889999999999888777777778888888888888999888888642 224455555556678888889
Q ss_pred HHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhCCCCC
Q 009066 291 LGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKP 339 (545)
Q Consensus 291 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p 339 (545)
.|..+.+++.+. .+.+..+|..|+.+|.+.|++++|+..++.+|..|
T Consensus 252 lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 252 LALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred HHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 999988888752 23445688889999999999999998888886544
No 134
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.17 E-value=3e-05 Score=64.64 Aligned_cols=96 Identities=18% Similarity=0.192 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHhHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHH
Q 009066 309 PDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKP-QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIY 386 (545)
Q Consensus 309 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~ 386 (545)
......+...+...|++++|.+.|+.. ...| +...|..+...+...|+++.|...+++..+.+|.+.. .+..++.+|
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~-~~~~la~~~ 95 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPR-PYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChH-HHHHHHHHH
Confidence 344556666777777777777777665 2233 5566777777777777777777777777777777766 777777778
Q ss_pred HHcCCchHHHHHHHHhhhC
Q 009066 387 AAMKKWDDVARIRLSMKEN 405 (545)
Q Consensus 387 ~~~g~~~~a~~~~~~m~~~ 405 (545)
...|++++|.+.++...+.
T Consensus 96 ~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 96 LALGEPESALKALDLAIEI 114 (135)
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 8888888887777766553
No 135
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.14 E-value=0.011 Score=58.42 Aligned_cols=364 Identities=12% Similarity=0.128 Sum_probs=210.7
Q ss_pred CChhhHHHHHHHHHcCCCCHHHHHHHHhcCC---CCCeehHHHHHHHHHhCCCHHHHHHHHhhCCc--CCHhHHHHHHHH
Q 009066 36 PDVVSYNIMLSCILLNSDDVVAAFDFFQRLP---IKDTASWNTMISGFVQKKNMAKARDLFLAMPE--KNSVSWSAMISG 110 (545)
Q Consensus 36 ~~~~~~~~li~~~~~~~g~~~~A~~~~~~m~---~~d~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~li~~ 110 (545)
-|..+|+.||.- ++. ...+++++.++++. +-....|..-|..-.+..+++....+|.+-+. -+...|...++-
T Consensus 18 ~di~sw~~lire-~qt-~~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lYl~Y 95 (656)
T KOG1914|consen 18 YDIDSWSQLIRE-AQT-QPIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLYLSY 95 (656)
T ss_pred ccHHHHHHHHHH-Hcc-CCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHHHHH
Confidence 378899999985 666 69999999999998 33567899999999999999999999998763 366677766654
Q ss_pred HHH-cCChHHHHH----HHhh------CCCCCcccHHHHHHHhcch---h-hhccCChHHHHHHHHHHHhCCCCC-----
Q 009066 111 YIE-CGQLDKAVE----LFKV------APVKSVVAWTAMISGYMKF---G-YVENSWAEDGLKLLRMMIGLGIRP----- 170 (545)
Q Consensus 111 ~~~-~g~~~~A~~----~f~~------~~~~~~~~~~~li~~~~~~---g-~~~~g~~~~A~~~~~~m~~~~~~p----- 170 (545)
-.+ .|+...++. .|+- |.-.+-..|+..+.-+-.- | ..++.+.+...+++++++..-+.-
T Consensus 96 VR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkLW 175 (656)
T KOG1914|consen 96 VRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKLW 175 (656)
T ss_pred HHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHHH
Confidence 332 334333222 2221 2223445577666543110 0 244456667777888887532110
Q ss_pred -CHHHHHHHHHHH-------hccCcHHHHHHHHHHHHh--CCCCCCccc---------------HHHHHHH---------
Q 009066 171 -NASSLSSVLLGC-------SHLSSLQLGKQVHQLVFK--SPLCKDTTA---------------LTPLISM--------- 216 (545)
Q Consensus 171 -d~~t~~~ll~~~-------~~~~~~~~a~~~~~~~~~--~g~~~~~~~---------------~~~li~~--------- 216 (545)
|-.+|-.-++.. -+...+..|+++++++.. .|+.....+ |-.+|.-
T Consensus 176 ~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~ 255 (656)
T KOG1914|consen 176 KDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTL 255 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcccc
Confidence 222232222211 123345566666666543 343222222 2222211
Q ss_pred ----------------------------------------HHhcCC-------HHHHHHHHHhccC----CChhhHHHHH
Q 009066 217 ----------------------------------------YCKCGD-------LEDACKLFLEIQR----KDVVTWNAMI 245 (545)
Q Consensus 217 ----------------------------------------y~~~g~-------~~~A~~~f~~~~~----~~~~~~~~li 245 (545)
+...|+ .+++..+++.... .+...|..+.
T Consensus 256 ~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a 335 (656)
T KOG1914|consen 256 DGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALA 335 (656)
T ss_pred cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111 1122222222111 0111111111
Q ss_pred HHH---HHcCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHh
Q 009066 246 SGY---AQHGKGEKALRLFDKMKDE-GMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAA-KPDHYTCMVDLLG 320 (545)
Q Consensus 246 ~~~---~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~ 320 (545)
.-- .+.++.+.....+++++.. ...|+ .+|..+++.-.+..-++.|+.+|.+..+. +..+ ++.++++++.-|+
T Consensus 336 ~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~-~r~~hhVfVa~A~mEy~c 413 (656)
T KOG1914|consen 336 DYEESRYDDNKEKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKARED-KRTRHHVFVAAALMEYYC 413 (656)
T ss_pred hhHHHhcccchhhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhc-cCCcchhhHHHHHHHHHh
Confidence 100 0011244445555555542 23332 35666677777777788889999888776 4444 7777888887554
Q ss_pred HcCCHHHHHHHHHhC--CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcC--CCCCCchhHHHHHHHHHHcCCchHHH
Q 009066 321 RAGKLVEAVDLIKKM--PFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNL--NPANAAGCYVQLANIYAAMKKWDDVA 396 (545)
Q Consensus 321 ~~g~~~~A~~~~~~m--~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~l~~~~~~~g~~~~a~ 396 (545)
.++.+-|.++|+-- .+..++.--...+.-+...++-..|..+|++++.. .|+.+...|..++.--+.-|+.+.+.
T Consensus 414 -skD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~ 492 (656)
T KOG1914|consen 414 -SKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSIL 492 (656)
T ss_pred -cCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHH
Confidence 56778888888754 22223344456667777778888888999988775 55555457888888888889988888
Q ss_pred HHHHHhhh
Q 009066 397 RIRLSMKE 404 (545)
Q Consensus 397 ~~~~~m~~ 404 (545)
++-+++..
T Consensus 493 ~lekR~~~ 500 (656)
T KOG1914|consen 493 KLEKRRFT 500 (656)
T ss_pred HHHHHHHH
Confidence 88777654
No 136
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.14 E-value=0.0007 Score=65.76 Aligned_cols=146 Identities=16% Similarity=0.123 Sum_probs=117.1
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHH-HHHHHccCcHHHHHHHHHHhHHhcCCCCC-HHHHHHH
Q 009066 238 VVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVAL-LLACNHAGLVDLGIQYFDSMVNDYGIAAK-PDHYTCM 315 (545)
Q Consensus 238 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-l~a~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l 315 (545)
...+-...-.+...|++++|+..++.+... .||...|..+ ...+...++.++|.+.++.+... .|+ ....-.+
T Consensus 306 ~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l---~P~~~~l~~~~ 380 (484)
T COG4783 306 LAAQYGRALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALAL---DPNSPLLQLNL 380 (484)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CCCccHHHHHH
Confidence 334444455566789999999999998875 6676666655 46888999999999999999863 555 6677789
Q ss_pred HHHHhHcCCHHHHHHHHHhC--CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCch
Q 009066 316 VDLLGRAGKLVEAVDLIKKM--PFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWD 393 (545)
Q Consensus 316 i~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~ 393 (545)
.++|.+.|++.+|..+++.. ..+.|+..|..|..+|...|+..++... ....|...|+|+
T Consensus 381 a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A------------------~AE~~~~~G~~~ 442 (484)
T COG4783 381 AQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA------------------RAEGYALAGRLE 442 (484)
T ss_pred HHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH------------------HHHHHHhCCCHH
Confidence 99999999999999999887 3335788999999999999998876554 455677899999
Q ss_pred HHHHHHHHhhhCC
Q 009066 394 DVARIRLSMKENN 406 (545)
Q Consensus 394 ~a~~~~~~m~~~~ 406 (545)
+|.......+++.
T Consensus 443 ~A~~~l~~A~~~~ 455 (484)
T COG4783 443 QAIIFLMRASQQV 455 (484)
T ss_pred HHHHHHHHHHHhc
Confidence 9999998887654
No 137
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.13 E-value=5.3e-05 Score=74.01 Aligned_cols=122 Identities=16% Similarity=0.174 Sum_probs=96.7
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHh
Q 009066 276 FVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKP-QPAIFGTLLSACRV 353 (545)
Q Consensus 276 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~ 353 (545)
...|+..+...++++.|..+++++.+. .|+ ....|+..+...++-.+|.+++++. ...| +...+......|..
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 445666677778888888888888754 344 4445777777788888888887776 2233 55666667777889
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchHHHHHHHHhh
Q 009066 354 HKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMK 403 (545)
Q Consensus 354 ~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 403 (545)
.++++.|+.+++++.+..|++.. +|..|+.+|.+.|++++|+-.+..+-
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~-~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFE-TWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHH-HHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 99999999999999999999988 99999999999999999999988774
No 138
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.09 E-value=0.0019 Score=69.25 Aligned_cols=234 Identities=11% Similarity=0.084 Sum_probs=143.1
Q ss_pred CCeehHHHHHHHHHhCCCHHHHHHHHhhCCc--C-CHhHHHHHHHHHHHcCChHHHHHHHhhCCCCCcccHHHHHHHhcc
Q 009066 68 KDTASWNTMISGFVQKKNMAKARDLFLAMPE--K-NSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMK 144 (545)
Q Consensus 68 ~d~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~ 144 (545)
.+...|..|+..+...+++++|.++.+...+ | ....|-.+...|...++.++|..+ .++...
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv-------------~~l~~~-- 93 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL-------------NLIDSF-- 93 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh-------------hhhhhc--
Confidence 3455677777777777888888877775553 2 233444444466666665555544 233333
Q ss_pred hhhhccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHH
Q 009066 145 FGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 224 (545)
Q Consensus 145 ~g~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~ 224 (545)
....++.-...+...|... .-+...+..+..+|.+.|+.+++..+++++++.. +.|+.+.|-+...|+.. +++
T Consensus 94 ---~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 94 ---SQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKE 166 (906)
T ss_pred ---ccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHH
Confidence 3333443333333444442 3344577778888888899999999999888887 66788888888888888 888
Q ss_pred HHHHHHHhccCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHccCcHHHHHHHHHHhHHhc
Q 009066 225 DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSIT-FVALLLACNHAGLVDLGIQYFDSMVNDY 303 (545)
Q Consensus 225 ~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 303 (545)
+|.+++.+.. ..|...+++.++.+++.++... .|+... |..+++ .+....
T Consensus 167 KA~~m~~KAV-----------~~~i~~kq~~~~~e~W~k~~~~--~~~d~d~f~~i~~----------------ki~~~~ 217 (906)
T PRK14720 167 KAITYLKKAI-----------YRFIKKKQYVGIEEIWSKLVHY--NSDDFDFFLRIER----------------KVLGHR 217 (906)
T ss_pred HHHHHHHHHH-----------HHHHhhhcchHHHHHHHHHHhc--CcccchHHHHHHH----------------HHHhhh
Confidence 8888877654 3366777888888888888774 333322 222222 222211
Q ss_pred CCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHH
Q 009066 304 GIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKP-QPAIFGTLLSACR 352 (545)
Q Consensus 304 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~ 352 (545)
+...-..++--+...|-..++++++..+++.+ ...| |.....-++..|.
T Consensus 218 ~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 218 EFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred ccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 22233444555556666677777777777766 3333 3444455555544
No 139
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.07 E-value=5.9e-06 Score=50.40 Aligned_cols=35 Identities=29% Similarity=0.635 Sum_probs=30.9
Q ss_pred ccHHHHHHHhcchhhhccCChHHHHHHHHHHHhCCCCCCH
Q 009066 133 VAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNA 172 (545)
Q Consensus 133 ~~~~~li~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~pd~ 172 (545)
++||++|.+| .+.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~-----~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGL-----CKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHH-----HHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 4789999999 8999999999999999999998873
No 140
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.07 E-value=0.00016 Score=60.16 Aligned_cols=113 Identities=12% Similarity=0.069 Sum_probs=86.5
Q ss_pred HHHHHHHcCCCCCH-HHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhC-CC
Q 009066 260 LFDKMKDEGMKPDS-ITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PF 337 (545)
Q Consensus 260 ~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~ 337 (545)
.|++... ..|+. .....+...+...|++++|.+.++.+... .+.+...+..+...|.+.|++++|...+++. ..
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445544 34433 34555667777889999999999888763 3557788888899999999999999988877 33
Q ss_pred CC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCc
Q 009066 338 KP-QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAA 376 (545)
Q Consensus 338 ~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 376 (545)
.| +...+..+...+...|+++.|...+++.++.+|++..
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 34 5677888888899999999999999999999998863
No 141
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.00 E-value=1.2e-05 Score=48.62 Aligned_cols=33 Identities=45% Similarity=0.836 Sum_probs=27.8
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC
Q 009066 239 VTWNAMISGYAQHGKGEKALRLFDKMKDEGMKP 271 (545)
Q Consensus 239 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 271 (545)
.+||.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888877
No 142
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.99 E-value=0.0072 Score=54.29 Aligned_cols=157 Identities=15% Similarity=0.126 Sum_probs=87.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----ccC
Q 009066 212 PLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN----HAG 287 (545)
Q Consensus 212 ~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~----~~g 287 (545)
.-...|...|++++|.+..+....-+....| ...+.+..+.+-|...+++|.+- -+..|.+.|..++. ..+
T Consensus 113 ~aa~i~~~~~~~deAl~~~~~~~~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~gge 187 (299)
T KOG3081|consen 113 LAAIIYMHDGDFDEALKALHLGENLEAAALN--VQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGE 187 (299)
T ss_pred HhhHHhhcCCChHHHHHHHhccchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccch
Confidence 3344566667777777766663222222222 33345555666777777777652 24555555555443 234
Q ss_pred cHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhC--CCCCCHhHHHHHHHHHHhcCCH-HHHHHHH
Q 009066 288 LVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM--PFKPQPAIFGTLLSACRVHKRL-DLAEFAA 364 (545)
Q Consensus 288 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~li~~~~~~g~~-~~A~~~~ 364 (545)
.+..|.-+|++|.. ..+|++.+.+.+..+....|++++|..++++. ....++.+...++..-...|.. +.-.+..
T Consensus 188 k~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l 265 (299)
T KOG3081|consen 188 KIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNL 265 (299)
T ss_pred hhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHH
Confidence 56666667776654 34666666666666666677777777766665 2223445555555444444443 3345566
Q ss_pred HHHhcCCCCCC
Q 009066 365 MNLFNLNPANA 375 (545)
Q Consensus 365 ~~~~~~~p~~~ 375 (545)
.++....|..+
T Consensus 266 ~QLk~~~p~h~ 276 (299)
T KOG3081|consen 266 SQLKLSHPEHP 276 (299)
T ss_pred HHHHhcCCcch
Confidence 66666666654
No 143
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.93 E-value=0.0047 Score=55.41 Aligned_cols=167 Identities=13% Similarity=0.144 Sum_probs=103.4
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhccCC-Ch
Q 009066 160 LRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK-DV 238 (545)
Q Consensus 160 ~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~-~~ 238 (545)
.+.+.......+......-...|.+.+++++|....... .+......=+..+.+..+.+-|.+.+++|.+- +-
T Consensus 96 ~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~------~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided 169 (299)
T KOG3081|consen 96 YELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG------ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDED 169 (299)
T ss_pred HHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchH
Confidence 334443333334333334444567777777777665541 12222333345566777788888888888764 34
Q ss_pred hhHHHHHHHHHH----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHH
Q 009066 239 VTWNAMISGYAQ----HGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTC 314 (545)
Q Consensus 239 ~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 314 (545)
.+.+.|..++.+ .+.+.+|.-+|++|-+. ..|+..+.+....++...|++++|..+++....+ -..++++...
T Consensus 170 ~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k--d~~dpetL~N 246 (299)
T KOG3081|consen 170 ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK--DAKDPETLAN 246 (299)
T ss_pred HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc--cCCCHHHHHH
Confidence 456666666554 23677888888888763 6788888888888888888888888888887764 3455666666
Q ss_pred HHHHHhHcCCHHHH-HHHHHhC
Q 009066 315 MVDLLGRAGKLVEA-VDLIKKM 335 (545)
Q Consensus 315 li~~~~~~g~~~~A-~~~~~~m 335 (545)
++-+-...|...++ .+.+.++
T Consensus 247 liv~a~~~Gkd~~~~~r~l~QL 268 (299)
T KOG3081|consen 247 LIVLALHLGKDAEVTERNLSQL 268 (299)
T ss_pred HHHHHHHhCCChHHHHHHHHHH
Confidence 66555555554433 3344444
No 144
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.92 E-value=0.015 Score=56.10 Aligned_cols=134 Identities=13% Similarity=0.115 Sum_probs=96.4
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHH
Q 009066 239 VTWNAMISGYAQHGKGEKALRLFDKMKDEG-MKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVD 317 (545)
Q Consensus 239 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 317 (545)
.+|-..+..-.+....+.|..+|-+..+.| +.++...+++.+..++ .|+...|..+|+.-...+ +.++.--.-.+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f--~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF--PDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC--CCchHHHHHHHH
Confidence 456677777777777888888888888887 5667777777776554 467788888887665532 223333345666
Q ss_pred HHhHcCCHHHHHHHHHhC--CCCCC--HhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC
Q 009066 318 LLGRAGKLVEAVDLIKKM--PFKPQ--PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANA 375 (545)
Q Consensus 318 ~~~~~g~~~~A~~~~~~m--~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~ 375 (545)
-+.+.++-+.|..+|+.. .+..+ ..+|..+|.--..-|+...+..+-+++.++-|...
T Consensus 475 fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen 536 (660)
T COG5107 475 FLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQEN 536 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHh
Confidence 777888888888888855 22223 46788888888888888888888888888888764
No 145
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.87 E-value=2.2e-05 Score=47.49 Aligned_cols=33 Identities=18% Similarity=0.399 Sum_probs=25.5
Q ss_pred ccHHHHHHHhcchhhhccCChHHHHHHHHHHHhCCCCC
Q 009066 133 VAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRP 170 (545)
Q Consensus 133 ~~~~~li~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~p 170 (545)
.+||.+|.+| .+.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~-----~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRAC-----AKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHH-----HHCCCHHHHHHHHHHHHHhCCCC
Confidence 5677777777 77777778888888887777776
No 146
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.84 E-value=0.00067 Score=57.22 Aligned_cols=114 Identities=17% Similarity=0.095 Sum_probs=53.9
Q ss_pred cCcHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHhHcCCHHHHHHHHHhC-CCCCCH----hHHHHHHHHHHhcCCHHH
Q 009066 286 AGLVDLGIQYFDSMVNDYGIAA-KPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKPQP----AIFGTLLSACRVHKRLDL 359 (545)
Q Consensus 286 ~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~----~~~~~li~~~~~~g~~~~ 359 (545)
.++...+...++.+.+.++-.+ .....-.+...+...|++++|...|+.. ...||. ...-.|...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 4455555555555554321110 0122223445555556666665555555 111222 123334455555666666
Q ss_pred HHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchHHHHHHHH
Q 009066 360 AEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLS 401 (545)
Q Consensus 360 A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 401 (545)
|+..++.... .+-.+. .+..++++|...|++++|...|+.
T Consensus 104 Al~~L~~~~~-~~~~~~-~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQIPD-EAFKAL-AAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhccC-cchHHH-HHHHHHHHHHHCCCHHHHHHHHHH
Confidence 6666544221 111222 455666666666666666666653
No 147
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.81 E-value=0.00023 Score=54.42 Aligned_cols=92 Identities=20% Similarity=0.244 Sum_probs=64.8
Q ss_pred HHHHHHHHhHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHc
Q 009066 312 YTCMVDLLGRAGKLVEAVDLIKKM-PFKP-QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAM 389 (545)
Q Consensus 312 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~ 389 (545)
+..+...+...|++++|...+++. ...| +...+..+...+...++++.|...+++.....|.+.. ++..++.++...
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 81 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAK-AYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchh-HHHHHHHHHHHH
Confidence 445566666777777777777765 2233 3356666777777778888888888887777777765 777777888888
Q ss_pred CCchHHHHHHHHhhh
Q 009066 390 KKWDDVARIRLSMKE 404 (545)
Q Consensus 390 g~~~~a~~~~~~m~~ 404 (545)
|++++|...+....+
T Consensus 82 ~~~~~a~~~~~~~~~ 96 (100)
T cd00189 82 GKYEEALEAYEKALE 96 (100)
T ss_pred HhHHHHHHHHHHHHc
Confidence 888888777776544
No 148
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.76 E-value=3.4e-05 Score=45.46 Aligned_cols=31 Identities=48% Similarity=0.939 Sum_probs=23.0
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHcCC
Q 009066 239 VTWNAMISGYAQHGKGEKALRLFDKMKDEGM 269 (545)
Q Consensus 239 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 269 (545)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3677777777777777777777777776653
No 149
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.76 E-value=0.00056 Score=55.32 Aligned_cols=99 Identities=16% Similarity=0.154 Sum_probs=54.9
Q ss_pred HHHHHHHHccCcHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHhHcCCHHHHHHHHHhC-CCCCC----HhHHHHHHHH
Q 009066 277 VALLLACNHAGLVDLGIQYFDSMVNDYGIAA-KPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKPQ----PAIFGTLLSA 350 (545)
Q Consensus 277 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~li~~ 350 (545)
..+...+...|++++|.+.+..+.+.+.-.+ ....+..+..++.+.|++++|...|+.+ ...|+ ..++..+...
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 85 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMS 85 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHH
Confidence 3444445555666666666665554311111 1234445666666666666666666655 21222 3445566666
Q ss_pred HHhcCCHHHHHHHHHHHhcCCCCCC
Q 009066 351 CRVHKRLDLAEFAAMNLFNLNPANA 375 (545)
Q Consensus 351 ~~~~g~~~~A~~~~~~~~~~~p~~~ 375 (545)
+...|+.+.|...++++++..|++.
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~p~~~ 110 (119)
T TIGR02795 86 LQELGDKEKAKATLQQVIKRYPGSS 110 (119)
T ss_pred HHHhCChHHHHHHHHHHHHHCcCCh
Confidence 6667777777777777777776654
No 150
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.75 E-value=0.0023 Score=53.93 Aligned_cols=116 Identities=15% Similarity=0.106 Sum_probs=65.0
Q ss_pred cCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCC--HHHHHHHHHHHhHcCCHH
Q 009066 251 HGKGEKALRLFDKMKDEGMKPD--SITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK--PDHYTCMVDLLGRAGKLV 326 (545)
Q Consensus 251 ~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~ 326 (545)
.++...+...++.+......-. ......+...+...|++++|...|+.+... ...|. ......|...+...|+++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 5666666666666665421110 122223345566667777777777776654 21121 122334566666777777
Q ss_pred HHHHHHHhCCCC-CCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009066 327 EAVDLIKKMPFK-PQPAIFGTLLSACRVHKRLDLAEFAAMNL 367 (545)
Q Consensus 327 ~A~~~~~~m~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 367 (545)
+|+..++..+.. .....+..+...+...|+.++|...|++.
T Consensus 103 ~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 103 EALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 777777665211 23344555666677777777777777654
No 151
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.73 E-value=0.00043 Score=55.97 Aligned_cols=96 Identities=14% Similarity=0.125 Sum_probs=80.9
Q ss_pred HHHHHHHHHHhHcCCHHHHHHHHHhC-CCCCC----HhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC---CchhHHH
Q 009066 310 DHYTCMVDLLGRAGKLVEAVDLIKKM-PFKPQ----PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPAN---AAGCYVQ 381 (545)
Q Consensus 310 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~~ 381 (545)
.++..++..+.+.|++++|.+.|+++ ...|+ ...+..+...+...|+++.|...++++....|++ .. ++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~-~~~~ 81 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPD-ALLK 81 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccH-HHHH
Confidence 45677888899999999999999888 22343 3466778889999999999999999999988875 33 6889
Q ss_pred HHHHHHHcCCchHHHHHHHHhhhCC
Q 009066 382 LANIYAAMKKWDDVARIRLSMKENN 406 (545)
Q Consensus 382 l~~~~~~~g~~~~a~~~~~~m~~~~ 406 (545)
++.++.+.|++++|.+.++.+.+..
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHC
Confidence 9999999999999999999988753
No 152
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.71 E-value=3.5e-05 Score=58.14 Aligned_cols=57 Identities=14% Similarity=0.132 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchHHHHHHHH
Q 009066 343 IFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLS 401 (545)
Q Consensus 343 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 401 (545)
.|..+..++.+.|++++|..++++ .+.+|.+.. ....++.+|.+.|++++|.+++++
T Consensus 27 ~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~-~~~l~a~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 27 YLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPD-IHYLLARCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHH-HHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHH-HHHHHHHHHHHhCCHHHHHHHHhc
Confidence 344455555555555555555555 444444433 444556666666666666665543
No 153
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.68 E-value=0.006 Score=54.35 Aligned_cols=161 Identities=16% Similarity=0.229 Sum_probs=122.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHH
Q 009066 241 WNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL-LACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLL 319 (545)
Q Consensus 241 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 319 (545)
|..++-+....|+.+.|...++++...- |.+.-...+= .-+-..|+.++|.++++.+..+ -+.|..+|--=+-+.
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~d--dpt~~v~~KRKlAil 130 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNYKEAIEYYESLLED--DPTDTVIRKRKLAIL 130 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhchhhHHHHHHHHhcc--CcchhHHHHHHHHHH
Confidence 4445556667899999999999988752 5543322221 2244678999999999999875 355667777666677
Q ss_pred hHcCCHHHHHHHHHhC--CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCc---hH
Q 009066 320 GRAGKLVEAVDLIKKM--PFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKW---DD 394 (545)
Q Consensus 320 ~~~g~~~~A~~~~~~m--~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~---~~ 394 (545)
-..|+.-+|++-+.+. .+..|...|.-|...|...|+++.|...+++++-..|.++. .+..++..+.-.|.. +-
T Consensus 131 ka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l-~f~rlae~~Yt~gg~eN~~~ 209 (289)
T KOG3060|consen 131 KAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPL-YFQRLAEVLYTQGGAENLEL 209 (289)
T ss_pred HHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHH-HHHHHHHHHHHHhhHHHHHH
Confidence 7778777888766655 45579999999999999999999999999999999999987 888999987766654 44
Q ss_pred HHHHHHHhhhCC
Q 009066 395 VARIRLSMKENN 406 (545)
Q Consensus 395 a~~~~~~m~~~~ 406 (545)
+++++.+..+..
T Consensus 210 arkyy~~alkl~ 221 (289)
T KOG3060|consen 210 ARKYYERALKLN 221 (289)
T ss_pred HHHHHHHHHHhC
Confidence 777777766543
No 154
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.67 E-value=0.00063 Score=66.71 Aligned_cols=100 Identities=14% Similarity=0.114 Sum_probs=66.4
Q ss_pred HHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCH
Q 009066 280 LLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKP-QPAIFGTLLSACRVHKRL 357 (545)
Q Consensus 280 l~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~ 357 (545)
...+...|++++|++.|.++++. .+.+...|..+..+|.+.|++++|+..+++. .+.| +...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCH
Confidence 34455667777777777777652 2445666677777777777777777777766 3334 445666677777777777
Q ss_pred HHHHHHHHHHhcCCCCCCchhHHHH
Q 009066 358 DLAEFAAMNLFNLNPANAAGCYVQL 382 (545)
Q Consensus 358 ~~A~~~~~~~~~~~p~~~~~~~~~l 382 (545)
++|+..|+++++++|++.. ....+
T Consensus 87 ~eA~~~~~~al~l~P~~~~-~~~~l 110 (356)
T PLN03088 87 QTAKAALEKGASLAPGDSR-FTKLI 110 (356)
T ss_pred HHHHHHHHHHHHhCCCCHH-HHHHH
Confidence 7777777777777777764 43333
No 155
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.65 E-value=0.00074 Score=51.47 Aligned_cols=59 Identities=14% Similarity=0.208 Sum_probs=27.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHhH
Q 009066 241 WNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV 300 (545)
Q Consensus 241 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 300 (545)
|..+...+...|++++|+..+++..+.. +.+...+..+...+...+++++|.+.++...
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 61 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKAL 61 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555554431 1122333334444444455555555544443
No 156
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.61 E-value=8.2e-05 Score=43.75 Aligned_cols=30 Identities=30% Similarity=0.517 Sum_probs=20.2
Q ss_pred ccHHHHHHHhcchhhhccCChHHHHHHHHHHHhCC
Q 009066 133 VAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLG 167 (545)
Q Consensus 133 ~~~~~li~~~~~~g~~~~g~~~~A~~~~~~m~~~~ 167 (545)
++||+||++| .+.|++++|.++|++|.+.|
T Consensus 1 v~y~~li~~~-----~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 1 VTYNSLISGY-----CKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred CcHHHHHHHH-----HccchHHHHHHHHHHHhHCc
Confidence 3566777777 66666777777777766655
No 157
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.60 E-value=0.0039 Score=63.97 Aligned_cols=138 Identities=18% Similarity=0.083 Sum_probs=61.2
Q ss_pred CChhhHHHHHHHHHHcC-----ChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHcc--------CcHHHHHHHHHHhHH
Q 009066 236 KDVVTWNAMISGYAQHG-----KGEKALRLFDKMKDEGMKPDS-ITFVALLLACNHA--------GLVDLGIQYFDSMVN 301 (545)
Q Consensus 236 ~~~~~~~~li~~~~~~g-----~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~--------g~~~~a~~~~~~~~~ 301 (545)
.|...|...+.+..... ...+|..+|++..+. .|+- ..+..+..++... .++..+.+.......
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 35566766666643322 255677777777663 4543 2222222211110 011222222222111
Q ss_pred hcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhC-CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC
Q 009066 302 DYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANA 375 (545)
Q Consensus 302 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~ 375 (545)
....+.++..|.++.-.....|++++|...+++. ...|+...|..+...+...|+.++|...+++++.++|.++
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 1012223344444444444445555555555544 3334444455555555555555555555555555555544
No 158
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.60 E-value=0.00013 Score=52.54 Aligned_cols=64 Identities=14% Similarity=0.105 Sum_probs=56.0
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcC-CchHHHHHHHHhhh
Q 009066 340 QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMK-KWDDVARIRLSMKE 404 (545)
Q Consensus 340 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~ 404 (545)
+..+|..+...+...|++++|+..|+++++.+|+++. +|..++.+|...| ++++|.+.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~-~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAE-AYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHH-HHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH-HHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 4667888888999999999999999999999999888 8999999999999 79999998887654
No 159
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.59 E-value=0.0008 Score=58.67 Aligned_cols=82 Identities=16% Similarity=0.077 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHhHcCCHHHHHHHHHhC-CCCCC----HhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHH
Q 009066 309 PDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKPQ----PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLA 383 (545)
Q Consensus 309 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~ 383 (545)
...+..+...|...|++++|...|++. ...|+ ...|..+...+...|+++.|...++++++..|++.. .+..++
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~lg 113 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPS-ALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH-HHHHHH
Confidence 445667777777788888888877766 22222 357788888888899999999999999998888877 788888
Q ss_pred HHHHHcCC
Q 009066 384 NIYAAMKK 391 (545)
Q Consensus 384 ~~~~~~g~ 391 (545)
.+|...|+
T Consensus 114 ~~~~~~g~ 121 (172)
T PRK02603 114 VIYHKRGE 121 (172)
T ss_pred HHHHHcCC
Confidence 88888776
No 160
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.57 E-value=0.0013 Score=64.58 Aligned_cols=102 Identities=11% Similarity=0.015 Sum_probs=82.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcC
Q 009066 244 MISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAG 323 (545)
Q Consensus 244 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 323 (545)
....+...|++++|++.|++.++... -+...+..+..++...|++++|...++.+++. -+.+...|..+..+|...|
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIEL--DPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhC
Confidence 34567788999999999999998642 35667778888999999999999999999863 3446788999999999999
Q ss_pred CHHHHHHHHHhC-CCCCCHhHHHHHH
Q 009066 324 KLVEAVDLIKKM-PFKPQPAIFGTLL 348 (545)
Q Consensus 324 ~~~~A~~~~~~m-~~~p~~~~~~~li 348 (545)
++++|...|++. .+.|+......++
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l 110 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLI 110 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 999999999987 5556554444444
No 161
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.57 E-value=0.0025 Score=60.54 Aligned_cols=153 Identities=12% Similarity=0.069 Sum_probs=111.0
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHH--HHHHccCcHHHHHHHHHHhHHhcCCCCCHHH------------
Q 009066 246 SGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL--LACNHAGLVDLGIQYFDSMVNDYGIAAKPDH------------ 311 (545)
Q Consensus 246 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll--~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~------------ 311 (545)
.++...|++++|...--..++.. ++. .+...+ .++-..++.+.|...|++.++ +.|+-..
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld--~~n-~~al~vrg~~~yy~~~~~ka~~hf~qal~---ldpdh~~sk~~~~~~k~le 250 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLD--ATN-AEALYVRGLCLYYNDNADKAINHFQQALR---LDPDHQKSKSASMMPKKLE 250 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcc--cch-hHHHHhcccccccccchHHHHHHHhhhhc---cChhhhhHHhHhhhHHHHH
Confidence 45667788888888776666532 211 122222 234456788888888877653 3444221
Q ss_pred -HHHHHHHHhHcCCHHHHHHHHHhC-CCC-----CCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHH
Q 009066 312 -YTCMVDLLGRAGKLVEAVDLIKKM-PFK-----PQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLAN 384 (545)
Q Consensus 312 -~~~li~~~~~~g~~~~A~~~~~~m-~~~-----p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~ 384 (545)
+..-.....+.|++.+|.+.|.+. .+. |+...|.....+..+.|+.++|+.--+.+++++|.... +|..-++
T Consensus 251 ~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syik-all~ra~ 329 (486)
T KOG0550|consen 251 VKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIK-ALLRRAN 329 (486)
T ss_pred HHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHH-HHHHHHH
Confidence 112234567889999999999877 443 45566777777788999999999999999999999887 8999999
Q ss_pred HHHHcCCchHHHHHHHHhhhC
Q 009066 385 IYAAMKKWDDVARIRLSMKEN 405 (545)
Q Consensus 385 ~~~~~g~~~~a~~~~~~m~~~ 405 (545)
++...++|++|.+-++...+.
T Consensus 330 c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 330 CHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999887664
No 162
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.57 E-value=0.0008 Score=58.43 Aligned_cols=95 Identities=11% Similarity=-0.080 Sum_probs=75.2
Q ss_pred CCHHHHHHHHHHHhHcCCHHHHHHHHHhC-CCCCC----HhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHH
Q 009066 307 AKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKPQ----PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQ 381 (545)
Q Consensus 307 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~ 381 (545)
.....|..++..+...|++++|...|++. ...|+ ..+|..+...+...|++++|+..+++++.+.|.... ++..
T Consensus 33 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~-~~~~ 111 (168)
T CHL00033 33 KEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQ-ALNN 111 (168)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHH-HHHH
Confidence 34566677788888889999999988877 22232 347888999999999999999999999999998877 8888
Q ss_pred HHHHHH-------HcCCchHHHHHHHHh
Q 009066 382 LANIYA-------AMKKWDDVARIRLSM 402 (545)
Q Consensus 382 l~~~~~-------~~g~~~~a~~~~~~m 402 (545)
++.+|. ..|++++|...+++.
T Consensus 112 la~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 112 MAVICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 888888 778888776666544
No 163
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.56 E-value=0.036 Score=52.63 Aligned_cols=97 Identities=12% Similarity=0.167 Sum_probs=59.4
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-----CCHH-HHHHHHHHHHccCcHHHHHHHHHHhHHh-cCCCCC--HH
Q 009066 240 TWNAMISGYAQHGKGEKALRLFDKMKDEGMK-----PDSI-TFVALLLACNHAGLVDLGIQYFDSMVND-YGIAAK--PD 310 (545)
Q Consensus 240 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-----p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~-~~~~~~--~~ 310 (545)
.+..+...+.+.|++++|+++|++....-.. ++.. .|...+-++...|+...|.+.++..... .++..+ ..
T Consensus 157 ~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~ 236 (282)
T PF14938_consen 157 CLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYK 236 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHH
Confidence 4556677888889999999999888764322 2221 2233333556678888888888887643 123333 34
Q ss_pred HHHHHHHHHhH--cCCHHHHHHHHHhCC
Q 009066 311 HYTCMVDLLGR--AGKLVEAVDLIKKMP 336 (545)
Q Consensus 311 ~~~~li~~~~~--~g~~~~A~~~~~~m~ 336 (545)
....|++++-. ...+++|..-|+.+.
T Consensus 237 ~~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 237 FLEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 45566776643 446777777777773
No 164
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.55 E-value=0.051 Score=57.06 Aligned_cols=215 Identities=14% Similarity=0.152 Sum_probs=117.7
Q ss_pred cCChHHHHHHHhhCCCCC-cccHHHHHHHhcchhhhccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHH
Q 009066 114 CGQLDKAVELFKVAPVKS-VVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGK 192 (545)
Q Consensus 114 ~g~~~~A~~~f~~~~~~~-~~~~~~li~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~a~ 192 (545)
.+++.+|.....++..+- -..|...+.++.. .+.|+.++|..+++.....+.. |..|...+-..|...+..+++.
T Consensus 22 ~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl---~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKKHPNALYAKVLKALSL---FRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAV 97 (932)
T ss_pred hHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHH---HHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHH
Confidence 455555555555443322 2334444555533 6677777777666666554433 6667777777777777777777
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHhcCCHH----HHHHHHHhccCCChhhHHHHHHHHHHcCCh---------HHHHH
Q 009066 193 QVHQLVFKSPLCKDTTALTPLISMYCKCGDLE----DACKLFLEIQRKDVVTWNAMISGYAQHGKG---------EKALR 259 (545)
Q Consensus 193 ~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~----~A~~~f~~~~~~~~~~~~~li~~~~~~g~~---------~~A~~ 259 (545)
.+|+++.+.. |+......+..+|.+.+++. .|.+++...+++--..|+.+--.+...... .-|..
T Consensus 98 ~~Ye~~~~~~--P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~ 175 (932)
T KOG2053|consen 98 HLYERANQKY--PSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEK 175 (932)
T ss_pred HHHHHHHhhC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHH
Confidence 7777776653 44555555666666666543 356666666655555565432222111111 23445
Q ss_pred HHHHHHHcC-CCCCHHHHHHHHHHHHccCcHHHHHHHHH-HhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhC
Q 009066 260 LFDKMKDEG-MKPDSITFVALLLACNHAGLVDLGIQYFD-SMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335 (545)
Q Consensus 260 ~~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~-~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 335 (545)
.++.+.+.+ ..-+..-...-+......|..++|.+++. ..... -..-+...-+--++.+...+++.+-.++-.++
T Consensus 176 m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~-l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~L 252 (932)
T KOG2053|consen 176 MVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEK-LTSANLYLENKKLDLLKLLNRWQELFELSSRL 252 (932)
T ss_pred HHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHh-ccccchHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 555555543 22222222222334556777888888873 33322 22333444455677777778777766555444
No 165
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.51 E-value=0.0032 Score=59.52 Aligned_cols=143 Identities=14% Similarity=0.198 Sum_probs=103.4
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHH
Q 009066 239 VTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA-CNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVD 317 (545)
Q Consensus 239 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 317 (545)
.+|-.++...-+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|.++|+...+. ++.+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 467888888888888999999999988543 2233334333333 33356777799999999885 4667788889999
Q ss_pred HHhHcCCHHHHHHHHHhC-CCCCCH----hHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHH
Q 009066 318 LLGRAGKLVEAVDLIKKM-PFKPQP----AIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIY 386 (545)
Q Consensus 318 ~~~~~g~~~~A~~~~~~m-~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~ 386 (545)
.+.+.|+.+.|..+|++. ..-|.. ..|...+.--.+.|+.+....+.+++.+.-|.+. ....+++-|
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~--~~~~f~~ry 150 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN--SLELFSDRY 150 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS---HHHHHHCCT
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh--HHHHHHHHh
Confidence 999999999999999987 222333 5899999999999999999999999998888765 445555444
No 166
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.51 E-value=0.11 Score=50.58 Aligned_cols=375 Identities=13% Similarity=0.115 Sum_probs=193.2
Q ss_pred HhCCCChHHHHHHHccCCC---CC------hhhHHHHHHHHHcCCCCHHHHHHHHhcCC--CCCeehHHHHHHH--HHhC
Q 009066 17 AKQRGKLKDAQELFDKIPQ---PD------VVSYNIMLSCILLNSDDVVAAFDFFQRLP--IKDTASWNTMISG--FVQK 83 (545)
Q Consensus 17 ~~~g~~~~~A~~~f~~~~~---~~------~~~~~~li~~~~~~~g~~~~A~~~~~~m~--~~d~~~~~~li~~--~~~~ 83 (545)
-++++ +.+|.++|.++.+ .+ .+.-+-+|++|..+ +.+.......... .| ...|-.+..+ +-+.
T Consensus 17 qkq~~-~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~--nld~Me~~l~~l~~~~~-~s~~l~LF~~L~~Y~~ 92 (549)
T PF07079_consen 17 QKQKK-FQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN--NLDLMEKQLMELRQQFG-KSAYLPLFKALVAYKQ 92 (549)
T ss_pred HHHhh-hhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh--hHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHh
Confidence 35677 9999999988863 12 22355678888876 5555544444443 22 3445555544 3478
Q ss_pred CCHHHHHHHHhhCCc------------------CCHhHHHHHHHHHHHcCChHHHHHHHhhCCC--------CCcccHHH
Q 009066 84 KNMAKARDLFLAMPE------------------KNSVSWSAMISGYIECGQLDKAVELFKVAPV--------KSVVAWTA 137 (545)
Q Consensus 84 g~~~~a~~~~~~~~~------------------~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--------~~~~~~~~ 137 (545)
+.+.+|.+.+....+ +|...-+..++.+.+.|++.+++.++++|.. -++.+||.
T Consensus 93 k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~ 172 (549)
T PF07079_consen 93 KEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDR 172 (549)
T ss_pred hhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHH
Confidence 889999988876551 2334446677888999999999998887652 26677777
Q ss_pred HHHHhcchhhhc---cCC-------hHHHHHHHHHHHhC------CCCCCHHHHHHHHHHHhcc--CcHHHHHHHHHHHH
Q 009066 138 MISGYMKFGYVE---NSW-------AEDGLKLLRMMIGL------GIRPNASSLSSVLLGCSHL--SSLQLGKQVHQLVF 199 (545)
Q Consensus 138 li~~~~~~g~~~---~g~-------~~~A~~~~~~m~~~------~~~pd~~t~~~ll~~~~~~--~~~~~a~~~~~~~~ 199 (545)
++-.+.+.-+.. ... ++-++-..++|... .+.|-...+..++....-. ..+.--.+++....
T Consensus 173 ~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We 252 (549)
T PF07079_consen 173 AVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWE 252 (549)
T ss_pred HHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHH
Confidence 444432222111 111 12222223333221 2334444444444332211 12222333333333
Q ss_pred hCCCCCCcc-cHHHHHHHHHhcCCHHHHHHHHHhcc--------CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCC-
Q 009066 200 KSPLCKDTT-ALTPLISMYCKCGDLEDACKLFLEIQ--------RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGM- 269 (545)
Q Consensus 200 ~~g~~~~~~-~~~~li~~y~~~g~~~~A~~~f~~~~--------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~- 269 (545)
..-+.|+-. +...|+.-+.+ +.+++..+-+.+. +.=+.++..++....+.++..+|-+.+.-+.....
T Consensus 253 ~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~ 330 (549)
T PF07079_consen 253 NFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDPR 330 (549)
T ss_pred hhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCc
Confidence 333333322 22333333333 2233322222211 12233444445555555555554444443322110
Q ss_pred -----------------------------------------CCCHHHH-HHHH---HHHHccCc-HHHHHHHHHHhHHhc
Q 009066 270 -----------------------------------------KPDSITF-VALL---LACNHAGL-VDLGIQYFDSMVNDY 303 (545)
Q Consensus 270 -----------------------------------------~p~~~t~-~~ll---~a~~~~g~-~~~a~~~~~~~~~~~ 303 (545)
..|..-. ..|+ .-+-+.|. -++|..+++.+.+-
T Consensus 331 ~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~f- 409 (549)
T PF07079_consen 331 ISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQF- 409 (549)
T ss_pred chhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHh-
Confidence 0111100 0111 11222333 56777777666542
Q ss_pred CCCC-CHHHHHHHH----HHHhHc---CCHH---HHHHHHHhCCCCC----CHhHHHHHHHH--HHhcCCHHHHHHHHHH
Q 009066 304 GIAA-KPDHYTCMV----DLLGRA---GKLV---EAVDLIKKMPFKP----QPAIFGTLLSA--CRVHKRLDLAEFAAMN 366 (545)
Q Consensus 304 ~~~~-~~~~~~~li----~~~~~~---g~~~---~A~~~~~~m~~~p----~~~~~~~li~~--~~~~g~~~~A~~~~~~ 366 (545)
.| |...-+.+. ..|..+ ..+. .-..++++.++.| +...-|.|..| +..+|++.++...-.-
T Consensus 410 --t~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~W 487 (549)
T PF07079_consen 410 --TNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSW 487 (549)
T ss_pred --ccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 22 222222211 112111 1111 2223344555554 33455666665 5689999999999999
Q ss_pred HhcCCCCCCchhHHHHHHHHHHcCCchHHHHHHHHh
Q 009066 367 LFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSM 402 (545)
Q Consensus 367 ~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 402 (545)
+.+..|. +. +|..++-+.....++++|..++..+
T Consensus 488 L~~iaPS-~~-~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 488 LTKIAPS-PQ-AYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHhCCc-HH-HHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 9999994 44 9999999999999999999999865
No 167
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.51 E-value=0.00028 Score=50.06 Aligned_cols=57 Identities=19% Similarity=0.152 Sum_probs=43.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchHHHHHHHHhhh
Q 009066 347 LLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKE 404 (545)
Q Consensus 347 li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 404 (545)
+...+...|++++|+..|+++++..|++.. .+..++.++...|++++|...++++.+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~-a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPE-AWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHH-HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445667778888888888888888888777 788888888888888888888877754
No 168
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.50 E-value=0.032 Score=56.77 Aligned_cols=211 Identities=15% Similarity=0.192 Sum_probs=98.2
Q ss_pred CcccHHHHHHHhcchhhhccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhCCCCCCcccH
Q 009066 131 SVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTAL 210 (545)
Q Consensus 131 ~~~~~~~li~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 210 (545)
|....-.|...+ .+.|.-++|.+.|-+-- .|. ..+..|...+++.+|.++-+...- |.+.+.
T Consensus 851 ~s~llp~~a~mf-----~svGMC~qAV~a~Lr~s----~pk-----aAv~tCv~LnQW~~avelaq~~~l----~qv~tl 912 (1189)
T KOG2041|consen 851 DSELLPVMADMF-----TSVGMCDQAVEAYLRRS----LPK-----AAVHTCVELNQWGEAVELAQRFQL----PQVQTL 912 (1189)
T ss_pred ccchHHHHHHHH-----HhhchHHHHHHHHHhcc----CcH-----HHHHHHHHHHHHHHHHHHHHhccc----hhHHHH
Confidence 344555677777 77788888877664322 221 345567777777777665443211 111110
Q ss_pred --------------HHHHHHHHhcCCHHHHHHHHHhccCCCh---hhHHHHHHHHH----HcCChHHHHHHHHHHHHcCC
Q 009066 211 --------------TPLISMYCKCGDLEDACKLFLEIQRKDV---VTWNAMISGYA----QHGKGEKALRLFDKMKDEGM 269 (545)
Q Consensus 211 --------------~~li~~y~~~g~~~~A~~~f~~~~~~~~---~~~~~li~~~~----~~g~~~~A~~~~~~m~~~g~ 269 (545)
---|..+-+.|+.=+|-+++.+|.++.. +.+..+=..|. -..++.++++-.+.....|.
T Consensus 913 iak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~KklYVL~AlLvE~h~~~ik~~~~~~~~g~ 992 (1189)
T KOG2041|consen 913 IAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLGALLVENHRQTIKELRKIDKHGF 992 (1189)
T ss_pred HHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCc
Confidence 0134555666665555555555543211 11111111111 11123333444444333333
Q ss_pred CCCHHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhC----CCCCCHhHHH
Q 009066 270 KPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM----PFKPQPAIFG 345 (545)
Q Consensus 270 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~~~~ 345 (545)
..|... +...|...++-++.+..-+ -....++..|.+--...|.++.|+..--.+ .+-|...+|.
T Consensus 993 ~~dat~-------lles~~l~~~~ri~~n~Wr----gAEAyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiyS 1061 (1189)
T KOG2041|consen 993 LEDATD-------LLESGLLAEQSRILENTWR----GAEAYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYS 1061 (1189)
T ss_pred chhhhh-------hhhhhhhhhHHHHHHhhhh----hHHHHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHH
Confidence 322211 1122222333333322211 123455566666667778888877653332 2335556666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhcC
Q 009066 346 TLLSACRVHKRLDLAEFAAMNLFNL 370 (545)
Q Consensus 346 ~li~~~~~~g~~~~A~~~~~~~~~~ 370 (545)
.|.-+.+....+...-+.|.++...
T Consensus 1062 llALaaca~raFGtCSKAfmkLe~~ 1086 (1189)
T KOG2041|consen 1062 LLALAACAVRAFGTCSKAFMKLEAF 1086 (1189)
T ss_pred HHHHHHhhhhhhhhhHHHHHHHHhh
Confidence 5555555555555555555555443
No 169
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.46 E-value=0.009 Score=51.79 Aligned_cols=81 Identities=14% Similarity=0.115 Sum_probs=51.7
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHH
Q 009066 238 VVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPD--SITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCM 315 (545)
Q Consensus 238 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 315 (545)
...|..+...+...|++++|+..|++.......|. ..++..+...+...|+.++|...++...+. .+.....+..+
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~--~~~~~~~~~~l 112 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER--NPFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCcHHHHHHH
Confidence 34566677777777888888888888766432221 235666667777778888888887776642 23334455555
Q ss_pred HHHHh
Q 009066 316 VDLLG 320 (545)
Q Consensus 316 i~~~~ 320 (545)
...|.
T Consensus 113 a~i~~ 117 (168)
T CHL00033 113 AVICH 117 (168)
T ss_pred HHHHH
Confidence 55555
No 170
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.44 E-value=0.12 Score=49.52 Aligned_cols=108 Identities=19% Similarity=0.178 Sum_probs=71.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHH
Q 009066 211 TPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVD 290 (545)
Q Consensus 211 ~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 290 (545)
+.-|.-+...|+...|.++-.+..-||-..|-..+.+|+..+++++-..+... .- .++-|-.++.+|...|...
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s----kK--sPIGyepFv~~~~~~~~~~ 254 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS----KK--SPIGYEPFVEACLKYGNKK 254 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC----CC--CCCChHHHHHHHHHCCCHH
Confidence 33455556677778888887777777777888888888888887766654332 11 2355666777777777777
Q ss_pred HHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhC
Q 009066 291 LGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335 (545)
Q Consensus 291 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 335 (545)
+|..+...+. +..-+.+|.++|++.+|.+.--+.
T Consensus 255 eA~~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 255 EASKYIPKIP-----------DEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHHHHHHhCC-----------hHHHHHHHHHCCCHHHHHHHHHHc
Confidence 7777765421 144567777788877776654443
No 171
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.42 E-value=0.0073 Score=52.59 Aligned_cols=131 Identities=14% Similarity=0.186 Sum_probs=87.3
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHH
Q 009066 237 DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPD--SITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTC 314 (545)
Q Consensus 237 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 314 (545)
....+..+...+...|++++|+..|++.......++ ...+..+...+.+.|++++|...+.+..+. .+.+...+..
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~ 111 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNN 111 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHH
Confidence 445667777778888888888888888876443332 346667777888888888888888887753 2334566667
Q ss_pred HHHHHhHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCC
Q 009066 315 MVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKK 391 (545)
Q Consensus 315 li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~ 391 (545)
+..+|...|+...+..-++.. ...+++|...++++.+.+|++ |..++..+...|+
T Consensus 112 lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~----~~~~~~~~~~~~~ 166 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN----YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh----HHHHHHHHHhcCc
Confidence 777777777766554332221 123677888888888888875 4455555554443
No 172
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.41 E-value=0.00074 Score=50.81 Aligned_cols=81 Identities=21% Similarity=0.329 Sum_probs=43.0
Q ss_pred cCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHH
Q 009066 251 HGKGEKALRLFDKMKDEGM-KPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAV 329 (545)
Q Consensus 251 ~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 329 (545)
+|+++.|+.+|+++.+... .|+...+..+..++.+.|++++|..+++. .+. + +.+....-.+..+|.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~-~-~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKL-D-PSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH-H-HCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC-C-CCCHHHHHHHHHHHHHhCCHHHHH
Confidence 4666667777776666432 12333444456666666777777666655 211 1 112233334466666666666666
Q ss_pred HHHHh
Q 009066 330 DLIKK 334 (545)
Q Consensus 330 ~~~~~ 334 (545)
+++++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 66653
No 173
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.41 E-value=0.0019 Score=59.02 Aligned_cols=92 Identities=14% Similarity=0.122 Sum_probs=67.4
Q ss_pred HHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhC-CCCCCH-hHHHHHHHHHHhcCCHHHH
Q 009066 283 CNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKPQP-AIFGTLLSACRVHKRLDLA 360 (545)
Q Consensus 283 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~~~~~li~~~~~~g~~~~A 360 (545)
..+.+++++|+..|...++ -.+.|+..|..-..+|.+.|.++.|.+-.+.. .+.|.. ..|..|..+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 3456777777777777764 23445666666777777888777777766554 555543 6788888888888999999
Q ss_pred HHHHHHHhcCCCCCCc
Q 009066 361 EFAAMNLFNLNPANAA 376 (545)
Q Consensus 361 ~~~~~~~~~~~p~~~~ 376 (545)
++.|++.++++|++..
T Consensus 169 ~~aykKaLeldP~Ne~ 184 (304)
T KOG0553|consen 169 IEAYKKALELDPDNES 184 (304)
T ss_pred HHHHHhhhccCCCcHH
Confidence 9999999999998874
No 174
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.38 E-value=0.14 Score=49.03 Aligned_cols=112 Identities=10% Similarity=0.104 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHH
Q 009066 273 SITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACR 352 (545)
Q Consensus 273 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~ 352 (545)
..+.+..+.-|...|....|.++-. ++.+ |+...|-..+.+|+..+++++-.++... +.++.-|..++.+|.
T Consensus 177 ~~Sl~~Ti~~li~~~~~k~A~kl~k----~Fkv-~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 177 GLSLNDTIRKLIEMGQEKQAEKLKK----EFKV-PDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACL 248 (319)
T ss_pred cCCHHHHHHHHHHCCCHHHHHHHHH----HcCC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHH
Confidence 3455556666777888877776653 3444 7888899999999999999988876654 345678999999999
Q ss_pred hcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchHHHHHHHHh
Q 009066 353 VHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSM 402 (545)
Q Consensus 353 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 402 (545)
..|+..+|..+..++ .+..-+..|.+.|+|.+|.+.-.+.
T Consensus 249 ~~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HCCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHHHc
Confidence 999999999888772 3467778899999999998765443
No 175
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.36 E-value=0.00057 Score=62.34 Aligned_cols=87 Identities=17% Similarity=0.216 Sum_probs=76.7
Q ss_pred HHHhHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchH
Q 009066 317 DLLGRAGKLVEAVDLIKKM-PFKP-QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDD 394 (545)
Q Consensus 317 ~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~ 394 (545)
.-+.+.+++++|+..|.+. .+.| |.+-|-.=..+|.+.|.++.|++-.+..+.++|.... +|..|..+|...|++++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~ysk-ay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSK-AYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHH-HHHHHHHHHHccCcHHH
Confidence 4456789999999999887 5666 5566677788999999999999999999999999988 99999999999999999
Q ss_pred HHHHHHHhhh
Q 009066 395 VARIRLSMKE 404 (545)
Q Consensus 395 a~~~~~~m~~ 404 (545)
|.+.|++..+
T Consensus 168 A~~aykKaLe 177 (304)
T KOG0553|consen 168 AIEAYKKALE 177 (304)
T ss_pred HHHHHHhhhc
Confidence 9999887654
No 176
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.35 E-value=0.0042 Score=57.12 Aligned_cols=101 Identities=14% Similarity=0.086 Sum_probs=85.6
Q ss_pred CCCHHHHHHHHHHHhHcCCHHHHHHHHHhC-CCC-CCHhHHHHHHHHHHhc---CCHHHHHHHHHHHhcCCCCCCchhHH
Q 009066 306 AAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFK-PQPAIFGTLLSACRVH---KRLDLAEFAAMNLFNLNPANAAGCYV 380 (545)
Q Consensus 306 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~li~~~~~~---g~~~~A~~~~~~~~~~~p~~~~~~~~ 380 (545)
+-|.+.|-.|...|.+.|+.+.|..-|.+. .+. ++...+..+..++... ....++..++++++.++|++.. +..
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~ir-al~ 231 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIR-ALS 231 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHH-HHH
Confidence 778899999999999999999999999887 333 4566777777665433 3455899999999999999998 999
Q ss_pred HHHHHHHHcCCchHHHHHHHHhhhCCC
Q 009066 381 QLANIYAAMKKWDDVARIRLSMKENNV 407 (545)
Q Consensus 381 ~l~~~~~~~g~~~~a~~~~~~m~~~~~ 407 (545)
.|+..+...|++.+|...|+.|.+..-
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~lp 258 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLLP 258 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCC
Confidence 999999999999999999999988654
No 177
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.32 E-value=0.0028 Score=52.81 Aligned_cols=98 Identities=12% Similarity=0.083 Sum_probs=60.9
Q ss_pred HHHccCC-CCChhhHHHHHHHHHcCCCCHHHHHHHHhcCC---CCCeehHHHHHHHHHhCCCHHHHHHHHhhCC---cCC
Q 009066 28 ELFDKIP-QPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP---IKDTASWNTMISGFVQKKNMAKARDLFLAMP---EKN 100 (545)
Q Consensus 28 ~~f~~~~-~~~~~~~~~li~~~~~~~g~~~~A~~~~~~m~---~~d~~~~~~li~~~~~~g~~~~a~~~~~~~~---~~~ 100 (545)
..+..+. +.+....-.+-..+... |++++|.++|+... +-+..-|-.|...+-..|++++|+..|.... ..|
T Consensus 24 ~~l~~~~~~~~l~~lY~~A~~ly~~-G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~dd 102 (157)
T PRK15363 24 RMLLDDDVTQPLNTLYRYAMQLMEV-KEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDA 102 (157)
T ss_pred HHHHCCChHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence 3333444 33333333334444555 77777777777655 3344566677777777777777777777654 345
Q ss_pred HhHHHHHHHHHHHcCChHHHHHHHhh
Q 009066 101 SVSWSAMISGYIECGQLDKAVELFKV 126 (545)
Q Consensus 101 ~~~~~~li~~~~~~g~~~~A~~~f~~ 126 (545)
+..+-.+..+|.+.|+.+.|++.|+.
T Consensus 103 p~~~~~ag~c~L~lG~~~~A~~aF~~ 128 (157)
T PRK15363 103 PQAPWAAAECYLACDNVCYAIKALKA 128 (157)
T ss_pred chHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 66777777777777777777777764
No 178
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.27 E-value=0.005 Score=47.65 Aligned_cols=81 Identities=11% Similarity=0.185 Sum_probs=63.4
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHccC--------cHHHHHHHHHHhHHhcCCCCCHH
Q 009066 240 TWNAMISGYAQHGKGEKALRLFDKMKDEGM-KPDSITFVALLLACNHAG--------LVDLGIQYFDSMVNDYGIAAKPD 310 (545)
Q Consensus 240 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~a~~~~g--------~~~~a~~~~~~~~~~~~~~~~~~ 310 (545)
+-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+..+.. ++-+.+.+++.|... +++|+.+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-~lKP~~e 105 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-KLKPNDE 105 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-ccCCcHH
Confidence 334456666677999999999999999999 899999999998776543 345667778888775 7888888
Q ss_pred HHHHHHHHHhH
Q 009066 311 HYTCMVDLLGR 321 (545)
Q Consensus 311 ~~~~li~~~~~ 321 (545)
+|+.++..+.+
T Consensus 106 tYnivl~~Llk 116 (120)
T PF08579_consen 106 TYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHH
Confidence 88888877654
No 179
>PRK15331 chaperone protein SicA; Provisional
Probab=97.26 E-value=0.0047 Score=51.77 Aligned_cols=90 Identities=16% Similarity=0.090 Sum_probs=76.2
Q ss_pred HHHHHHhHcCCHHHHHHHHHhC-CCC-CCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCC
Q 009066 314 CMVDLLGRAGKLVEAVDLIKKM-PFK-PQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKK 391 (545)
Q Consensus 314 ~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~ 391 (545)
...--+...|++++|..+|.-+ -.. -|..-|..|...+...++++.|...|.....++++++. .+...+.+|...|+
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~-p~f~agqC~l~l~~ 120 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYR-PVFFTGQCQLLMRK 120 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCC-ccchHHHHHHHhCC
Confidence 3444456789999999999876 112 35667888999999999999999999999999999988 89999999999999
Q ss_pred chHHHHHHHHhhh
Q 009066 392 WDDVARIRLSMKE 404 (545)
Q Consensus 392 ~~~a~~~~~~m~~ 404 (545)
.+.|+..|+...+
T Consensus 121 ~~~A~~~f~~a~~ 133 (165)
T PRK15331 121 AAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998765
No 180
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.25 E-value=0.00034 Score=50.18 Aligned_cols=52 Identities=17% Similarity=0.172 Sum_probs=40.7
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchHHHHHHHHhhh
Q 009066 352 RVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKE 404 (545)
Q Consensus 352 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 404 (545)
...|++++|+..|+++++.+|++.. ....++.+|.+.|++++|.++++.+..
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~-~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPE-ARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHH-HHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4567888888888888888888777 777888888888888888888877654
No 181
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.25 E-value=0.0009 Score=47.44 Aligned_cols=60 Identities=22% Similarity=0.218 Sum_probs=44.8
Q ss_pred HHHHHhHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC
Q 009066 315 MVDLLGRAGKLVEAVDLIKKM-PFKP-QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPAN 374 (545)
Q Consensus 315 li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~ 374 (545)
+...+.+.|++++|.+.|++. ...| +...|..+...+...|++++|...|+++++..|++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 456677788888888888877 3345 45677888888888888888888888888888875
No 182
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.23 E-value=0.048 Score=55.05 Aligned_cols=97 Identities=19% Similarity=0.227 Sum_probs=56.0
Q ss_pred HHHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHH
Q 009066 213 LISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 292 (545)
Q Consensus 213 li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 292 (545)
...++...|+.++|..+. ..+|=.+-++++-+++-. .+..+...+..-+-+...+..|
T Consensus 709 AAEmLiSaGe~~KAi~i~------------------~d~gW~d~lidI~rkld~----~ere~l~~~a~ylk~l~~~gLA 766 (1081)
T KOG1538|consen 709 AAEMLISAGEHVKAIEIC------------------GDHGWVDMLIDIARKLDK----AEREPLLLCATYLKKLDSPGLA 766 (1081)
T ss_pred HHHHhhcccchhhhhhhh------------------hcccHHHHHHHHHhhcch----hhhhHHHHHHHHHhhccccchH
Confidence 344555566666665442 233444444444444322 2333444444445556667777
Q ss_pred HHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhCC-CCCCH
Q 009066 293 IQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP-FKPQP 341 (545)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~ 341 (545)
-++|.+|-. ...++++....+++++|..+-++.| ..||+
T Consensus 767 aeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe~~~dV 806 (1081)
T KOG1538|consen 767 AEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPEFKDDV 806 (1081)
T ss_pred HHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCccccccc
Confidence 777777642 2457778888888888888888773 34444
No 183
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.21 E-value=0.076 Score=48.94 Aligned_cols=56 Identities=14% Similarity=0.080 Sum_probs=31.6
Q ss_pred HHHHHHccCcHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHhHcCCHHHHHHHHHh
Q 009066 279 LLLACNHAGLVDLGIQYFDSMVNDYGIAAK-PDHYTCMVDLLGRAGKLVEAVDLIKK 334 (545)
Q Consensus 279 ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~ 334 (545)
+..-|.+.|.+..|..-++.+++++.-.|. .+....++.+|...|..++|.++...
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 344555666666666666666655432222 34445566666666666666665443
No 184
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.20 E-value=0.005 Score=58.21 Aligned_cols=130 Identities=8% Similarity=0.081 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhH-cCCHHHHHHHHHhC--CCCCCHhHHHHHHHH
Q 009066 274 ITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGR-AGKLVEAVDLIKKM--PFKPQPAIFGTLLSA 350 (545)
Q Consensus 274 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m--~~~p~~~~~~~li~~ 350 (545)
.+|..++....+.+..+.|+.+|.+..+. ...+..+|.....+-.+ .++.+.|.++|+.. .+..+...|...+.-
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~--~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKD--KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 46788888899999999999999999753 23345666666666455 56666699999987 344577889999999
Q ss_pred HHhcCCHHHHHHHHHHHhcCCCCCC--chhHHHHHHHHHHcCCchHHHHHHHHhhhC
Q 009066 351 CRVHKRLDLAEFAAMNLFNLNPANA--AGCYVQLANIYAAMKKWDDVARIRLSMKEN 405 (545)
Q Consensus 351 ~~~~g~~~~A~~~~~~~~~~~p~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 405 (545)
+...++.+.|..+|++.+..-|... ...|...+..-.+.|+++.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999988765543 237889999999999999999999888763
No 185
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.19 E-value=0.35 Score=49.57 Aligned_cols=192 Identities=15% Similarity=0.134 Sum_probs=92.0
Q ss_pred hHHHHHHHccCCCCChhhHHHHHHHHHcCCCCHHHHHHHHhcCC-CCCee------------hHHHHHHHHHhCCCHHHH
Q 009066 23 LKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP-IKDTA------------SWNTMISGFVQKKNMAKA 89 (545)
Q Consensus 23 ~~~A~~~f~~~~~~~~~~~~~li~~~~~~~g~~~~A~~~~~~m~-~~d~~------------~~~~li~~~~~~g~~~~a 89 (545)
+++|.+..+.-|.| ..|..+....++. -.++.|...|-+.. -+... .-.+=+.+| -|++++|
T Consensus 679 ledA~qfiEdnPHp--rLWrllAe~Al~K-l~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feea 753 (1189)
T KOG2041|consen 679 LEDAIQFIEDNPHP--RLWRLLAEYALFK-LALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEA 753 (1189)
T ss_pred hHHHHHHHhcCCch--HHHHHHHHHHHHH-HhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHh
Confidence 56666666654443 4466665555555 56667776666654 11110 011112222 3667777
Q ss_pred HHHHhhCCcCCHhHHHHHHHHHHHcCChHHHHHHHhhCCCC-----CcccHHHHHHHhcchhhhccCChHHHHHHHHHH-
Q 009066 90 RDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVK-----SVVAWTAMISGYMKFGYVENSWAEDGLKLLRMM- 163 (545)
Q Consensus 90 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~-----~~~~~~~li~~~~~~g~~~~g~~~~A~~~~~~m- 163 (545)
.++|-.|-.+|. .|.++.+.|++-...++++.-... -..+|+.+...+ +....+++|.+.|..-
T Consensus 754 ek~yld~drrDL-----Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~f-----a~~~~We~A~~yY~~~~ 823 (1189)
T KOG2041|consen 754 EKLYLDADRRDL-----AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETF-----AEMMEWEEAAKYYSYCG 823 (1189)
T ss_pred hhhhhccchhhh-----hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhcc
Confidence 777766654443 344555555555555555432211 113444444444 3333344444333221
Q ss_pred ------------------H--hCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCH
Q 009066 164 ------------------I--GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDL 223 (545)
Q Consensus 164 ------------------~--~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~ 223 (545)
. ...++-|....-.+..++.+.|.-++|.+.|-+ .+.+ .+.++.+...+++
T Consensus 824 ~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr---~s~p------kaAv~tCv~LnQW 894 (1189)
T KOG2041|consen 824 DTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLR---RSLP------KAAVHTCVELNQW 894 (1189)
T ss_pred chHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHh---ccCc------HHHHHHHHHHHHH
Confidence 1 111233444455555566666666666554422 2211 2345555556666
Q ss_pred HHHHHHHHhccCCCh
Q 009066 224 EDACKLFLEIQRKDV 238 (545)
Q Consensus 224 ~~A~~~f~~~~~~~~ 238 (545)
.+|.++-+...-|.+
T Consensus 895 ~~avelaq~~~l~qv 909 (1189)
T KOG2041|consen 895 GEAVELAQRFQLPQV 909 (1189)
T ss_pred HHHHHHHHhccchhH
Confidence 666666655544433
No 186
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.18 E-value=0.02 Score=54.28 Aligned_cols=116 Identities=17% Similarity=0.228 Sum_probs=71.7
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc-CcHHHHHHHHHHhHHhcCCCCC----HHHHHHHHHHH
Q 009066 245 ISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHA-GLVDLGIQYFDSMVNDYGIAAK----PDHYTCMVDLL 319 (545)
Q Consensus 245 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~-g~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~ 319 (545)
+..|...|++..|-..+.+ +...|... |++++|.+.|++...-+..... ...+..+...+
T Consensus 101 ~~~y~~~G~~~~aA~~~~~---------------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~ 165 (282)
T PF14938_consen 101 IEIYREAGRFSQAAKCLKE---------------LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLY 165 (282)
T ss_dssp HHHHHHCT-HHHHHHHHHH---------------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHH---------------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHH
Confidence 4455555555555444443 44566666 8888888888877654322222 34566788889
Q ss_pred hHcCCHHHHHHHHHhCC---CC-----CCHh-HHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC
Q 009066 320 GRAGKLVEAVDLIKKMP---FK-----PQPA-IFGTLLSACRVHKRLDLAEFAAMNLFNLNPANA 375 (545)
Q Consensus 320 ~~~g~~~~A~~~~~~m~---~~-----p~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~ 375 (545)
.+.|++++|.++|++.. .. .+.. .+-..+-.+...||+..|...+++....+|.-.
T Consensus 166 ~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~ 230 (282)
T PF14938_consen 166 ARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFA 230 (282)
T ss_dssp HHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTST
T ss_pred HHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Confidence 99999999999998761 11 1121 222233355677999999999999999988654
No 187
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.18 E-value=0.015 Score=46.72 Aligned_cols=93 Identities=13% Similarity=0.213 Sum_probs=66.6
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHH
Q 009066 243 AMISGYAQHGKGEKALRLFDKMKDEGMKPDS--ITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAA-KPDHYTCMVDLL 319 (545)
Q Consensus 243 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~ 319 (545)
....++-..|+.++|+.+|++....|..... ..+..+.+++...|++++|..+++.....+.-.+ +......+..++
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 3456677889999999999999988766542 3566677888899999999999988876531111 223333455677
Q ss_pred hHcCCHHHHHHHHHhC
Q 009066 320 GRAGKLVEAVDLIKKM 335 (545)
Q Consensus 320 ~~~g~~~~A~~~~~~m 335 (545)
...|+.++|++.+-..
T Consensus 86 ~~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEA 101 (120)
T ss_pred HHCCCHHHHHHHHHHH
Confidence 8889999988876543
No 188
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.15 E-value=0.0054 Score=60.51 Aligned_cols=119 Identities=13% Similarity=0.094 Sum_probs=69.6
Q ss_pred CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhC--CCCCCcccHHHHHHHHHhcCCHHHHHHHHHhccC----CChhh
Q 009066 167 GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKS--PLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR----KDVVT 240 (545)
Q Consensus 167 ~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~--g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~----~~~~~ 240 (545)
+.+.+...+..+++.+....+++.+..++-..... ....-..+..++|..|.+.|..+++..++..=.. +|..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 34456666666777777666677776666665554 2222233444666666666666666666654332 56666
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 009066 241 WNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNH 285 (545)
Q Consensus 241 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 285 (545)
+|.++..+.+.|++..|.++..+|...+...+..|+..-+.+|.+
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 666666666666666666666666655555555555555544444
No 189
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.15 E-value=0.25 Score=47.17 Aligned_cols=283 Identities=17% Similarity=0.172 Sum_probs=181.1
Q ss_pred HHHHHHHHH--HcCChHHHHHHHhhCC---CCCcccHHHHHHHhcchhhhccCChHHHHHHHHHHHhCCCCCCHH--HHH
Q 009066 104 WSAMISGYI--ECGQLDKAVELFKVAP---VKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNAS--SLS 176 (545)
Q Consensus 104 ~~~li~~~~--~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~pd~~--t~~ 176 (545)
|.+|-.++. -.|+-..|+++-.+-. ..|....-.++.+-.. .-.|+++.|.+-|+.|.. .|... -+.
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaa---l~eG~~~~Ar~kfeAMl~---dPEtRllGLR 158 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAA---LLEGDYEDARKKFEAMLD---DPETRLLGLR 158 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHH---HhcCchHHHHHHHHHHhc---ChHHHHHhHH
Confidence 444444433 3566667776654422 3344444444433211 457888999999998875 22211 233
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhccC-----CChh--hHHHHHHHHH
Q 009066 177 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR-----KDVV--TWNAMISGYA 249 (545)
Q Consensus 177 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~-----~~~~--~~~~li~~~~ 249 (545)
.+.-...+.|+.+.|+++-+..-..- +.-...+.+.+...+..|+++.|+++.+.-.. +++. .--.|+.+-+
T Consensus 159 gLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA 237 (531)
T COG3898 159 GLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKA 237 (531)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHH
Confidence 33334457788888888877776543 23345678889999999999999999987653 4432 2222333222
Q ss_pred H---cCChHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCH
Q 009066 250 Q---HGKGEKALRLFDKMKDEGMKPDSITFV-ALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKL 325 (545)
Q Consensus 250 ~---~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 325 (545)
. .-+...|.+.-.+..+ +.||.+--. .-..++.+.|++.++-.+++.+-+. .|.+..+...+ +.+.|+.
T Consensus 238 ~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~---ePHP~ia~lY~--~ar~gdt 310 (531)
T COG3898 238 MSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA---EPHPDIALLYV--RARSGDT 310 (531)
T ss_pred HHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc---CCChHHHHHHH--HhcCCCc
Confidence 1 2345566665555444 567755333 3447888999999999999998764 67766554333 3455543
Q ss_pred HH--HHH--HHHhCCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHc-CCchHHHHHH
Q 009066 326 VE--AVD--LIKKMPFKP-QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAM-KKWDDVARIR 399 (545)
Q Consensus 326 ~~--A~~--~~~~m~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~-g~~~~a~~~~ 399 (545)
.. ..+ -+..| +| +..+--.+..+....|++..|..-.+.+....|... .|..|.++-... |+-.++...+
T Consensus 311 a~dRlkRa~~L~sl--k~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres--~~lLlAdIeeAetGDqg~vR~wl 386 (531)
T COG3898 311 ALDRLKRAKKLESL--KPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRES--AYLLLADIEEAETGDQGKVRQWL 386 (531)
T ss_pred HHHHHHHHHHHHhc--CccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhh--HHHHHHHHHhhccCchHHHHHHH
Confidence 22 111 23333 45 446667777888899999999999999999999986 799999987544 9999888887
Q ss_pred HHhhh
Q 009066 400 LSMKE 404 (545)
Q Consensus 400 ~~m~~ 404 (545)
.+..+
T Consensus 387 Aqav~ 391 (531)
T COG3898 387 AQAVK 391 (531)
T ss_pred HHHhc
Confidence 76654
No 190
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.14 E-value=0.013 Score=57.88 Aligned_cols=97 Identities=11% Similarity=0.092 Sum_probs=55.1
Q ss_pred ccHHHHHHHhcchhhhccCChHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhCCCCCCcccH
Q 009066 133 VAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGL--GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTAL 210 (545)
Q Consensus 133 ~~~~~li~~~~~~g~~~~g~~~~A~~~~~~m~~~--~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 210 (545)
+....++..+ .+..+.+++..++.+.+.. ....-..|..++++.|...|..+.+..++..=...|+=||..++
T Consensus 67 ~dld~fvn~~-----~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 67 LDLDIFVNNV-----ESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred HHHHHHHhhc-----CCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 3444455555 4445555566665555543 11122234446666666666666666666666666666666666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcc
Q 009066 211 TPLISMYCKCGDLEDACKLFLEIQ 234 (545)
Q Consensus 211 ~~li~~y~~~g~~~~A~~~f~~~~ 234 (545)
|.|++.+.+.|++..|.++...|.
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~ 165 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMM 165 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHH
Confidence 666666666666666666665554
No 191
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.10 E-value=0.1 Score=44.46 Aligned_cols=133 Identities=11% Similarity=0.091 Sum_probs=99.4
Q ss_pred CCCCHHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhC-CCCC---CHhHH
Q 009066 269 MKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKP---QPAIF 344 (545)
Q Consensus 269 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p---~~~~~ 344 (545)
..|+...-..|..+....|+..+|...|++...- -+..|....-.+..+....++..+|...++++ ...| ++...
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 4567777777888888889999999988887762 35567777788888888889999998888877 1112 23344
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchHHHHHHHHhhh
Q 009066 345 GTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKE 404 (545)
Q Consensus 345 ~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 404 (545)
-.+...+...|.+..|+..|+.++.--|+.. .-......+.+.|+.+++..-+..+.+
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~--ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYPGPQ--ARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCCCHH--HHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 5567788899999999999999999888775 444556677888988887665554443
No 192
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.08 E-value=0.0016 Score=47.34 Aligned_cols=56 Identities=11% Similarity=0.084 Sum_probs=45.7
Q ss_pred HHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchHHHHHHHHhhhC
Q 009066 349 SACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKEN 405 (545)
Q Consensus 349 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 405 (545)
..|.+.++++.|..+++.++.++|+++. .+...+.++.+.|++++|.+.++...+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~-~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPE-LWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccch-hhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 4567788888888888888888888877 8888888888888888888888877654
No 193
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.06 E-value=0.14 Score=46.20 Aligned_cols=127 Identities=16% Similarity=0.062 Sum_probs=77.3
Q ss_pred HHHHHHhcchhhhccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhCCCCCCcccHHH---
Q 009066 136 TAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTP--- 212 (545)
Q Consensus 136 ~~li~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~--- 212 (545)
+.++..+ ...|.+.-.+.++++..+...+.++.....+.+...+.|+.+.|...++...+..-..|....+.
T Consensus 181 y~~~~~l-----lG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~ 255 (366)
T KOG2796|consen 181 YSMANCL-----LGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVL 255 (366)
T ss_pred HHHHHHH-----hcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHH
Confidence 4455555 55566666677777777665555666666777777777777777777776655432333333332
Q ss_pred --HHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 009066 213 --LISMYCKCGDLEDACKLFLEIQR---KDVVTWNAMISGYAQHGKGEKALRLFDKMKDE 267 (545)
Q Consensus 213 --li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 267 (545)
....|.-.+++..|...|++++. +|++.-|.-.-+..-.|+..+|++.++.|...
T Consensus 256 ~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 256 MNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33344556677777777776664 34455555444455567777777777777764
No 194
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.03 E-value=0.027 Score=57.97 Aligned_cols=134 Identities=13% Similarity=0.080 Sum_probs=97.8
Q ss_pred CCCCCHHHHHHHHHHHHcc-----CcHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHhHc--------CCHHHHHHHHH
Q 009066 268 GMKPDSITFVALLLACNHA-----GLVDLGIQYFDSMVNDYGIAAK-PDHYTCMVDLLGRA--------GKLVEAVDLIK 333 (545)
Q Consensus 268 g~~p~~~t~~~ll~a~~~~-----g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~--------g~~~~A~~~~~ 333 (545)
+...|...|...+.+.... +..+.|..+|++..+. .|+ ...|..+..+|... ++++.+.+...
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l---dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS---EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 4566778888888775432 3477999999998863 565 45566555444322 22445555555
Q ss_pred hC---C-CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchHHHHHHHHhhhCC
Q 009066 334 KM---P-FKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENN 406 (545)
Q Consensus 334 ~m---~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 406 (545)
+. + ...+...|.++.-.....|++++|...++++++++|+ .. +|..++.+|...|+.++|...+++....+
T Consensus 409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~-a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WL-NYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 42 1 2235577888877777889999999999999999995 45 89999999999999999999999886643
No 195
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.01 E-value=0.0015 Score=46.97 Aligned_cols=65 Identities=15% Similarity=0.185 Sum_probs=48.8
Q ss_pred CHHHHHHHHHHHhHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcC-CHHHHHHHHHHHhcCCC
Q 009066 308 KPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKP-QPAIFGTLLSACRVHK-RLDLAEFAAMNLFNLNP 372 (545)
Q Consensus 308 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~p 372 (545)
++..|..+...+...|++++|+..|++. ...| +...|..+..++...| ++++|+..++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3566777777788888888888877766 3334 4567778888888888 68888888888888776
No 196
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.98 E-value=0.36 Score=46.13 Aligned_cols=256 Identities=16% Similarity=0.089 Sum_probs=167.4
Q ss_pred cHHHHHHHhcchhhhccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh--ccCcHHHHHHHHHHHHhCCCCCCccc--
Q 009066 134 AWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCS--HLSSLQLGKQVHQLVFKSPLCKDTTA-- 209 (545)
Q Consensus 134 ~~~~li~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~--~~~~~~~a~~~~~~~~~~g~~~~~~~-- 209 (545)
.|.+|-.+++. +-.|+-..|.++-.+-.+. +..|...+..++.+-. -.|+.+.|++-|+.|... |....
T Consensus 84 gyqALStGliA---agAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllG 156 (531)
T COG3898 84 GYQALSTGLIA---AGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLG 156 (531)
T ss_pred HHHHHhhhhhh---hccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHh
Confidence 34455555533 4467777787766655432 4556666667776643 469999999999999863 22111
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhccCC---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcC-CCCCHHH--HHHHHHHH
Q 009066 210 LTPLISMYCKCGDLEDACKLFLEIQRK---DVVTWNAMISGYAQHGKGEKALRLFDKMKDEG-MKPDSIT--FVALLLAC 283 (545)
Q Consensus 210 ~~~li~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t--~~~ll~a~ 283 (545)
...|.----+.|+.+.|.+.-+..-.. -.-.|.+.+...+..|+++.|+++++.-+... +.+|..- -..|+.+-
T Consensus 157 LRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAk 236 (531)
T COG3898 157 LRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAK 236 (531)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHH
Confidence 122333334679999998888877542 34578899999999999999999999877633 5555532 22344332
Q ss_pred Hc---cCcHHHHHHHHHHhHHhcCCCCCHHHH-HHHHHHHhHcCCHHHHHHHHHhC-CCCCCHhHHHHHHHHHHhcCCHH
Q 009066 284 NH---AGLVDLGIQYFDSMVNDYGIAAKPDHY-TCMVDLLGRAGKLVEAVDLIKKM-PFKPQPAIFGTLLSACRVHKRLD 358 (545)
Q Consensus 284 ~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~li~~~~~~g~~~ 358 (545)
.. ..+...|+..-.+.. .+.|+..-- ..-..+|.+.|++.++-.+++.+ ...|.+.+|...+ ..+.|+.-
T Consensus 237 A~s~ldadp~~Ar~~A~~a~---KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~--~ar~gdta 311 (531)
T COG3898 237 AMSLLDADPASARDDALEAN---KLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLYV--RARSGDTA 311 (531)
T ss_pred HHHHhcCChHHHHHHHHHHh---hcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHHH--HhcCCCcH
Confidence 21 124555555544433 456664332 23457889999999999999998 5567776665433 34555544
Q ss_pred HH-HHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchHHHHHHHHh
Q 009066 359 LA-EFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSM 402 (545)
Q Consensus 359 ~A-~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 402 (545)
.. .+-.+++..+.|++.. ....+..+-...|++..|..--+..
T Consensus 312 ~dRlkRa~~L~slk~nnae-s~~~va~aAlda~e~~~ARa~Aeaa 355 (531)
T COG3898 312 LDRLKRAKKLESLKPNNAE-SSLAVAEAALDAGEFSAARAKAEAA 355 (531)
T ss_pred HHHHHHHHHHHhcCccchH-HHHHHHHHHHhccchHHHHHHHHHH
Confidence 32 3445566778999988 8889999999999998876654443
No 197
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.98 E-value=0.0071 Score=57.52 Aligned_cols=255 Identities=11% Similarity=0.066 Sum_probs=156.9
Q ss_pred hccCChHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHhccCcHHHHHHHHHHHH--h--CCCC-CCcccHHHHHHHHH
Q 009066 148 VENSWAEDGLKLLRMMIGLGIRPNA----SSLSSVLLGCSHLSSLQLGKQVHQLVF--K--SPLC-KDTTALTPLISMYC 218 (545)
Q Consensus 148 ~~~g~~~~A~~~~~~m~~~~~~pd~----~t~~~ll~~~~~~~~~~~a~~~~~~~~--~--~g~~-~~~~~~~~li~~y~ 218 (545)
.+.|+....+.+|+..++.| .-|- ..|..+.++|.-.+++++|.++|..=+ . .|-. -.......|.+.+-
T Consensus 28 ck~gdcraGv~ff~aA~qvG-TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlK 106 (639)
T KOG1130|consen 28 CKMGDCRAGVDFFKAALQVG-TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLK 106 (639)
T ss_pred HhccchhhhHHHHHHHHHhc-chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhh
Confidence 67778888888888888876 2233 345666677778888899988875421 1 1111 11122233555566
Q ss_pred hcCCHHHHHHHHHhccC-------C--ChhhHHHHHHHHHHcCC--------------------hHHHHHHHHHHHH---
Q 009066 219 KCGDLEDACKLFLEIQR-------K--DVVTWNAMISGYAQHGK--------------------GEKALRLFDKMKD--- 266 (545)
Q Consensus 219 ~~g~~~~A~~~f~~~~~-------~--~~~~~~~li~~~~~~g~--------------------~~~A~~~~~~m~~--- 266 (545)
-.|.+++|.-.-.+-.. + ....+-.+...|...|+ ++.|.++|.+=++
T Consensus 107 v~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~ 186 (639)
T KOG1130|consen 107 VKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSE 186 (639)
T ss_pred hhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777655433221 1 12233345555544332 1234444443221
Q ss_pred -cCCC-CCHHHHHHHHHHHHccCcHHHHHHHHHH---hHHhcCCCCC-HHHHHHHHHHHhHcCCHHHHHHHHHhC-----
Q 009066 267 -EGMK-PDSITFVALLLACNHAGLVDLGIQYFDS---MVNDYGIAAK-PDHYTCMVDLLGRAGKLVEAVDLIKKM----- 335 (545)
Q Consensus 267 -~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~---~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m----- 335 (545)
.|-. .-...|..|-+.|.-.|++++|+..++. +.+++|-... ...+..|..++.-.|+++.|.+.|+..
T Consensus 187 ~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAi 266 (639)
T KOG1130|consen 187 KLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAI 266 (639)
T ss_pred HhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHH
Confidence 1100 0112344555555567889999888764 3344554332 457888999999999999999988754
Q ss_pred --CC-CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcC----C--CCCCchhHHHHHHHHHHcCCchHHHHHHHHhhh
Q 009066 336 --PF-KPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNL----N--PANAAGCYVQLANIYAAMKKWDDVARIRLSMKE 404 (545)
Q Consensus 336 --~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~--p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 404 (545)
+- .....+..+|.+.|....++++|+.++.+-+.+ + ..... ++..|+++|...|..++|+.+.+.-.+
T Consensus 267 elg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~R-acwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 267 ELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELR-ACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 21 123456778999999999999999888765432 1 12223 788999999999999999988766543
No 198
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.97 E-value=0.52 Score=47.74 Aligned_cols=182 Identities=14% Similarity=0.133 Sum_probs=126.3
Q ss_pred CcccHHHHHHHHHhcCCHHHHHHHHHhccCCC---hhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 009066 206 DTTALTPLISMYCKCGDLEDACKLFLEIQRKD---VVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA 282 (545)
Q Consensus 206 ~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 282 (545)
+..+|..-++.-.+.|+.+.+.-+|++..-|- ...|--.+.-....|+.+-|..++....+--++-...+-..-...
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 45678888888889999999999999987652 235655665555668888888888776654333222222222233
Q ss_pred HHccCcHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHhHcCCHHHHH---HHHHhC-CCCCCHhHHHHHHHH-----HH
Q 009066 283 CNHAGLVDLGIQYFDSMVNDYGIAAK-PDHYTCMVDLLGRAGKLVEAV---DLIKKM-PFKPQPAIFGTLLSA-----CR 352 (545)
Q Consensus 283 ~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~---~~~~~m-~~~p~~~~~~~li~~-----~~ 352 (545)
+-..|+++.|..+++.+..++ |+ ...-..-+....+.|..+.+. +++... +.+.+..+...+..- +.
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e~---pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~ 452 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESEY---PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYK 452 (577)
T ss_pred HHhhccHHHHHHHHHHHHhhC---CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHH
Confidence 556789999999999998753 44 344444566778889999888 555444 223333333333322 34
Q ss_pred hcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCC
Q 009066 353 VHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKK 391 (545)
Q Consensus 353 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~ 391 (545)
..++.+.|..++.++.+..|++.. .|..+++.....+.
T Consensus 453 i~~d~~~a~~~l~~~~~~~~~~k~-~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 453 IREDADLARIILLEANDILPDCKV-LYLELIRFELIQPS 490 (577)
T ss_pred HhcCHHHHHHHHHHhhhcCCccHH-HHHHHHHHHHhCCc
Confidence 578999999999999999999987 88888888776653
No 199
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.92 E-value=0.14 Score=43.70 Aligned_cols=114 Identities=13% Similarity=0.162 Sum_probs=49.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhccC----CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcC---CCCCHHHHHHHHHHH
Q 009066 211 TPLISMYCKCGDLEDACKLFLEIQR----KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEG---MKPDSITFVALLLAC 283 (545)
Q Consensus 211 ~~li~~y~~~g~~~~A~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~t~~~ll~a~ 283 (545)
-.|.+.....|+..+|...|++... .|....-.+..+....+++..|...++++.+.+ -.||. -..+...+
T Consensus 93 ~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~--~Ll~aR~l 170 (251)
T COG4700 93 YRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG--HLLFARTL 170 (251)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc--hHHHHHHH
Confidence 3344444444455555444444432 244444444444444455555555555544421 12221 22233444
Q ss_pred HccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHH
Q 009066 284 NHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAV 329 (545)
Q Consensus 284 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 329 (545)
...|..++|...|+..... -|+...-.-...++.+.|+.++|.
T Consensus 171 aa~g~~a~Aesafe~a~~~---ypg~~ar~~Y~e~La~qgr~~ea~ 213 (251)
T COG4700 171 AAQGKYADAESAFEVAISY---YPGPQARIYYAEMLAKQGRLREAN 213 (251)
T ss_pred HhcCCchhHHHHHHHHHHh---CCCHHHHHHHHHHHHHhcchhHHH
Confidence 4455555555555444432 333333333344444555444443
No 200
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.92 E-value=0.67 Score=48.13 Aligned_cols=304 Identities=13% Similarity=0.042 Sum_probs=159.8
Q ss_pred HHHHHHHHHhCCCHHHHHHHHhhCCcCC---HhHHHHHHHHHHHcCC---hHHHHHHHhhCCC--CCcccHHHHHHHhcc
Q 009066 73 WNTMISGFVQKKNMAKARDLFLAMPEKN---SVSWSAMISGYIECGQ---LDKAVELFKVAPV--KSVVAWTAMISGYMK 144 (545)
Q Consensus 73 ~~~li~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~g~---~~~A~~~f~~~~~--~~~~~~~~li~~~~~ 144 (545)
-..+|+-+...+.+..|+++-..+..|. ..++.....-+.+..+ -+-+..+=+++.. ...++|..+..-.
T Consensus 440 ~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~A-- 517 (829)
T KOG2280|consen 440 EEVVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRA-- 517 (829)
T ss_pred hhhhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHH--
Confidence 4456777888899999999988888665 6778888888877643 2334444455554 4567788777766
Q ss_pred hhhhccCChHHHHHHHHHHHhCCCC----CCHHHHHHHHHHHhccCcHHHHHHHHHHHHhCC-----------CCCCccc
Q 009066 145 FGYVENSWAEDGLKLLRMMIGLGIR----PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSP-----------LCKDTTA 209 (545)
Q Consensus 145 ~g~~~~g~~~~A~~~~~~m~~~~~~----pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g-----------~~~~~~~ 209 (545)
.+.|+.+-|..+++.=...+-. .+-.-+...+.-+.+.|+.+...++.-.+.+.- .+....+
T Consensus 518 ---y~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~l 594 (829)
T KOG2280|consen 518 ---YQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSL 594 (829)
T ss_pred ---HhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHH
Confidence 7888888888776532221100 012234445556667777777666655554321 1111111
Q ss_pred HHHHHH---------HHHhcCCHHHHHHHHH--hcc-----CCChhhHHHHHHHHHHcCC---hH-------HHHHHHHH
Q 009066 210 LTPLIS---------MYCKCGDLEDACKLFL--EIQ-----RKDVVTWNAMISGYAQHGK---GE-------KALRLFDK 263 (545)
Q Consensus 210 ~~~li~---------~y~~~g~~~~A~~~f~--~~~-----~~~~~~~~~li~~~~~~g~---~~-------~A~~~~~~ 263 (545)
|.-++. .|- .++-..+...|. ... ++-..........+++... -. +-+.+.+.
T Consensus 595 Y~~~~r~~~~~~l~d~y~-q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~ 673 (829)
T KOG2280|consen 595 YRQFMRHQDRATLYDFYN-QDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRT 673 (829)
T ss_pred HHHHHHhhchhhhhhhhh-cccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 111111 111 111111111111 000 0011112222233333222 11 11222222
Q ss_pred HHH-cCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhCCCCCCHh
Q 009066 264 MKD-EGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPA 342 (545)
Q Consensus 264 m~~-~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~ 342 (545)
+.. .|......|.+--+.-+...|+..+|.++-.+.. -||-..|-.=+.+++..+++++-+++-+.+. .+.
T Consensus 674 Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAkskk---sPI 745 (829)
T KOG2280|consen 674 LEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAKSKK---SPI 745 (829)
T ss_pred HHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC---CCC
Confidence 221 2333344445555555666666666666554432 4666666666677777777777666666552 244
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchHHHHHH
Q 009066 343 IFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIR 399 (545)
Q Consensus 343 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~ 399 (545)
-|.-...+|.+.|+.++|.+++-+.- -+.-...+|.+.|++.+|.+.-
T Consensus 746 Gy~PFVe~c~~~~n~~EA~KYiprv~---------~l~ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 746 GYLPFVEACLKQGNKDEAKKYIPRVG---------GLQEKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred CchhHHHHHHhcccHHHHhhhhhccC---------ChHHHHHHHHHhccHHHHHHHH
Confidence 56666677777777777777665441 1224556677777777766554
No 201
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.91 E-value=0.0055 Score=53.59 Aligned_cols=100 Identities=12% Similarity=0.115 Sum_probs=63.9
Q ss_pred HHHhhC--CCCCcccHHHHHHHhcchhhhccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc--------------
Q 009066 122 ELFKVA--PVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHL-------------- 185 (545)
Q Consensus 122 ~~f~~~--~~~~~~~~~~li~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~-------------- 185 (545)
..|++. ..++-.++..++..|.+....+.|..+=....++.|.+-|+.-|..+|+.||..+=+.
T Consensus 35 ~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~h 114 (228)
T PF06239_consen 35 ELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMH 114 (228)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhcc
Confidence 444444 3456666666676665544455666666666777777777777777777777765431
Q ss_pred --CcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcC
Q 009066 186 --SSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCG 221 (545)
Q Consensus 186 --~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g 221 (545)
.+-+-|..++++|...|+-||..++..|++.+++.+
T Consensus 115 yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 115 YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 234556667777777777777777777766665543
No 202
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.89 E-value=0.099 Score=47.07 Aligned_cols=138 Identities=9% Similarity=-0.022 Sum_probs=98.0
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHhHHhcC----CCCCHHHHHH
Q 009066 239 VTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYG----IAAKPDHYTC 314 (545)
Q Consensus 239 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~~~ 314 (545)
...+.++..+.-.|.+.-.+.++.+.++...+.+......|.+.-.+.|+.+.|...|+...+..+ +....-+...
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 455677777777888888999999998876666777788888888899999999999987765422 2223333334
Q ss_pred HHHHHhHcCCHHHHHHHHHhCCCC-C-CHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCc
Q 009066 315 MVDLLGRAGKLVEAVDLIKKMPFK-P-QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAA 376 (545)
Q Consensus 315 li~~~~~~g~~~~A~~~~~~m~~~-p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 376 (545)
....|.-++++.+|...+.+.+.. | |+...|.-.-...-.|+...|.+..+.+.+..|....
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l 321 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYL 321 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccch
Confidence 445566677888888888887432 2 3334444443445568888999999999998887653
No 203
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.88 E-value=0.025 Score=45.43 Aligned_cols=101 Identities=13% Similarity=0.112 Sum_probs=52.8
Q ss_pred hccCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHHHhCCCCC--CcccHHHHHHHHHhcCCH
Q 009066 148 VENSWAEDGLKLLRMMIGLGIRPN--ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCK--DTTALTPLISMYCKCGDL 223 (545)
Q Consensus 148 ~~~g~~~~A~~~~~~m~~~~~~pd--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~~li~~y~~~g~~ 223 (545)
-..|+.++|+.+|++....|+..+ ...+..+.+.+...|++++|..+++........+ +..+...+..++...|+.
T Consensus 12 d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~ 91 (120)
T PF12688_consen 12 DSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGRP 91 (120)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCCH
Confidence 556777777777777777665543 2244455556666677777776666665542110 111222223344455666
Q ss_pred HHHHHHHHhccCCChhhHHHHHHHH
Q 009066 224 EDACKLFLEIQRKDVVTWNAMISGY 248 (545)
Q Consensus 224 ~~A~~~f~~~~~~~~~~~~~li~~~ 248 (545)
++|...+-....++...|.--|..|
T Consensus 92 ~eAl~~~l~~la~~~~~y~ra~~~y 116 (120)
T PF12688_consen 92 KEALEWLLEALAETLPRYRRAIRFY 116 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6665555444433333333333333
No 204
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.87 E-value=0.0054 Score=43.77 Aligned_cols=48 Identities=17% Similarity=0.310 Sum_probs=22.8
Q ss_pred cCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhC
Q 009066 286 AGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335 (545)
Q Consensus 286 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 335 (545)
.|++++|.+.|+.+... .+.+...+..++.+|.+.|++++|.++++++
T Consensus 4 ~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~ 51 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQR--NPDNPEARLLLAQCYLKQGQYDEAEELLERL 51 (68)
T ss_dssp TTHHHHHHHHHHHHHHH--TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCC
T ss_pred ccCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44555555555555442 1224444445555555555555555555554
No 205
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=96.87 E-value=0.014 Score=45.19 Aligned_cols=80 Identities=18% Similarity=0.069 Sum_probs=64.6
Q ss_pred HHHHHHHhcchhhhccCChHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHhccC--------cHHHHHHHHHHHHhCCCCC
Q 009066 135 WTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGI-RPNASSLSSVLLGCSHLS--------SLQLGKQVHQLVFKSPLCK 205 (545)
Q Consensus 135 ~~~li~~~~~~g~~~~g~~~~A~~~~~~m~~~~~-~pd~~t~~~ll~~~~~~~--------~~~~a~~~~~~~~~~g~~~ 205 (545)
-...|..+ ...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. .+-....+|+.|+..+++|
T Consensus 28 ~i~~I~~~-----~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP 102 (120)
T PF08579_consen 28 QIDNINSC-----FENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKP 102 (120)
T ss_pred HHHHHHHH-----HhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCC
Confidence 34556666 677999999999999999999 899999999999876543 2445667888899889999
Q ss_pred CcccHHHHHHHHHh
Q 009066 206 DTTALTPLISMYCK 219 (545)
Q Consensus 206 ~~~~~~~li~~y~~ 219 (545)
+..+|+.++..+.+
T Consensus 103 ~~etYnivl~~Llk 116 (120)
T PF08579_consen 103 NDETYNIVLGSLLK 116 (120)
T ss_pred cHHHHHHHHHHHHH
Confidence 99999988877664
No 206
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.86 E-value=0.14 Score=49.68 Aligned_cols=159 Identities=20% Similarity=0.133 Sum_probs=89.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHhccCC-------ChhhHHHHHHHHHH---cCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 009066 212 PLISMYCKCGDLEDACKLFLEIQRK-------DVVTWNAMISGYAQ---HGKGEKALRLFDKMKDEGMKPDSITFVALLL 281 (545)
Q Consensus 212 ~li~~y~~~g~~~~A~~~f~~~~~~-------~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 281 (545)
.|+-.|-...+++...++.+.+... ....--...-++-+ .|+.++|++++..+......++..||..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 3455677777888888888877653 11222233445555 6788888888888666556667777766655
Q ss_pred HHHc---------cCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHH----HHHHH---HhC----C---CC
Q 009066 282 ACNH---------AGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVE----AVDLI---KKM----P---FK 338 (545)
Q Consensus 282 a~~~---------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~----A~~~~---~~m----~---~~ 338 (545)
.|-. ....++|...|.+.- .+.|+..+--.++-.+...|...+ ..++- ..+ + -.
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 5421 223566666665443 344554443344444444443221 11111 110 1 11
Q ss_pred CCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC
Q 009066 339 PQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPA 373 (545)
Q Consensus 339 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~ 373 (545)
.|-..+.+++.++.-.|+.+.|.+.+++++++.|.
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~ 337 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPP 337 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Confidence 23344566777777777777777777777776654
No 207
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.83 E-value=0.0089 Score=55.56 Aligned_cols=95 Identities=9% Similarity=0.062 Sum_probs=60.4
Q ss_pred HHHHHHHHHHhHcCCHHHHHHHHHhC-CCCCCH----hHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCc--hhHHHH
Q 009066 310 DHYTCMVDLLGRAGKLVEAVDLIKKM-PFKPQP----AIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAA--GCYVQL 382 (545)
Q Consensus 310 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~--~~~~~l 382 (545)
..|..-+..+.+.|++++|...|+.+ ...|+. ..+.-+...|...|+++.|...|+++++..|+++. .++..+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 34555555555667777777777666 222332 35556666777777777777777777776665432 145556
Q ss_pred HHHHHHcCCchHHHHHHHHhhh
Q 009066 383 ANIYAAMKKWDDVARIRLSMKE 404 (545)
Q Consensus 383 ~~~~~~~g~~~~a~~~~~~m~~ 404 (545)
+.+|...|++++|.++++...+
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 6677777777777777777655
No 208
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.80 E-value=0.018 Score=50.45 Aligned_cols=97 Identities=23% Similarity=0.333 Sum_probs=71.2
Q ss_pred HHHHHhc--cCCChhhHHHHHHHHHHc-----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc-------------
Q 009066 227 CKLFLEI--QRKDVVTWNAMISGYAQH-----GKGEKALRLFDKMKDEGMKPDSITFVALLLACNHA------------- 286 (545)
Q Consensus 227 ~~~f~~~--~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~------------- 286 (545)
...|+.. ..+|-.+|..++..|.+. |..+=....++.|.+.|+.-|..+|+.||..+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 4566665 457788888888888754 56676777788888899999999999999876542
Q ss_pred ---CcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCC
Q 009066 287 ---GLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGK 324 (545)
Q Consensus 287 ---g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 324 (545)
.+.+-|++++++|.. +|+-||.+++..|++.+++.+.
T Consensus 114 hyp~Qq~c~i~lL~qME~-~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMEN-NGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHHHH-cCCCCcHHHHHHHHHHhccccH
Confidence 234667777777755 4777888887777777766654
No 209
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.72 E-value=0.24 Score=47.70 Aligned_cols=87 Identities=15% Similarity=0.074 Sum_probs=49.4
Q ss_pred HHHHHcCChHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHhH
Q 009066 246 SGYAQHGKGEKALRLFDKMKDE---GMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK-PDHYTCMVDLLGR 321 (545)
Q Consensus 246 ~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~ 321 (545)
.-..++|++.+|.+.|.+.+.. +++|+...|.....+..+.|+.++|+.-.+...+ +.+. ...|..-..++.-
T Consensus 257 N~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~---iD~syikall~ra~c~l~ 333 (486)
T KOG0550|consen 257 NDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK---IDSSYIKALLRRANCHLA 333 (486)
T ss_pred hhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh---cCHHHHHHHHHHHHHHHH
Confidence 3345667777777777776652 2344455555555666677777777766655542 2222 1222233344455
Q ss_pred cCCHHHHHHHHHhC
Q 009066 322 AGKLVEAVDLIKKM 335 (545)
Q Consensus 322 ~g~~~~A~~~~~~m 335 (545)
.+++++|.+-|++.
T Consensus 334 le~~e~AV~d~~~a 347 (486)
T KOG0550|consen 334 LEKWEEAVEDYEKA 347 (486)
T ss_pred HHHHHHHHHHHHHH
Confidence 56677777666654
No 210
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.59 E-value=0.0091 Score=58.44 Aligned_cols=99 Identities=9% Similarity=0.061 Sum_probs=62.9
Q ss_pred CCCHHHHHHHHHHHhHcCCHHHHHHHHHhC-CCCCCH----hHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHH
Q 009066 306 AAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKPQP----AIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYV 380 (545)
Q Consensus 306 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 380 (545)
+.+...++.+..+|.+.|++++|+..|++. .+.|+. ..|..+..+|...|+.++|+..+++++++.+. .|.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~----~f~ 147 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNL----KFS 147 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcch----hHH
Confidence 334667777788888888888888888774 555654 34777888888888888888888888776311 222
Q ss_pred HHHH--HHHHcCCchHHHHHHHHhhhCCCc
Q 009066 381 QLAN--IYAAMKKWDDVARIRLSMKENNVV 408 (545)
Q Consensus 381 ~l~~--~~~~~g~~~~a~~~~~~m~~~~~~ 408 (545)
.+.. .+....+.++..++++.+.+-|..
T Consensus 148 ~i~~DpdL~plR~~pef~eLlee~rk~G~~ 177 (453)
T PLN03098 148 TILNDPDLAPFRASPEFKELQEEARKGGED 177 (453)
T ss_pred HHHhCcchhhhcccHHHHHHHHHHHHhCCc
Confidence 1111 122333445666677777666653
No 211
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.58 E-value=0.61 Score=43.02 Aligned_cols=54 Identities=17% Similarity=0.188 Sum_probs=38.8
Q ss_pred HHHHHHhHcCCHHHHHHHHHhC----CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009066 314 CMVDLLGRAGKLVEAVDLIKKM----PFKP-QPAIFGTLLSACRVHKRLDLAEFAAMNL 367 (545)
Q Consensus 314 ~li~~~~~~g~~~~A~~~~~~m----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~ 367 (545)
.+...|.+.|.+..|..-++.+ |-.| .......++.+|...|..++|......+
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 5667788888888877776666 3223 3356667778888889988888776654
No 212
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.58 E-value=0.0013 Score=39.40 Aligned_cols=32 Identities=31% Similarity=0.548 Sum_probs=29.8
Q ss_pred HHHHhcCCCCCCchhHHHHHHHHHHcCCchHHH
Q 009066 364 AMNLFNLNPANAAGCYVQLANIYAAMKKWDDVA 396 (545)
Q Consensus 364 ~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~ 396 (545)
|+++++++|+++. +|..|+.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~-a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAE-AYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHH-HHHHHHHHHHHCcCHHhhc
Confidence 6788999999998 9999999999999999986
No 213
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.56 E-value=0.23 Score=50.37 Aligned_cols=225 Identities=14% Similarity=0.086 Sum_probs=126.8
Q ss_pred hccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHH
Q 009066 148 VENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC 227 (545)
Q Consensus 148 ~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 227 (545)
++.-.+-+-+.-+++|++.|-.|+.... ...|+-.|.+.+|-++|.+ .|. -|-.+.+|.....++.|.
T Consensus 611 VRdl~~L~li~EL~~~k~rge~P~~iLl---A~~~Ay~gKF~EAAklFk~---~G~------enRAlEmyTDlRMFD~aQ 678 (1081)
T KOG1538|consen 611 VRDLRYLELISELEERKKRGETPNDLLL---ADVFAYQGKFHEAAKLFKR---SGH------ENRALEMYTDLRMFDYAQ 678 (1081)
T ss_pred HhccHHHHHHHHHHHHHhcCCCchHHHH---HHHHHhhhhHHHHHHHHHH---cCc------hhhHHHHHHHHHHHHHHH
Confidence 4444555566667788888877876543 3346667788888777643 232 123456666666666665
Q ss_pred HHHHhccCCChhhHHHHHHH---HH-HcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHhHHhc
Q 009066 228 KLFLEIQRKDVVTWNAMISG---YA-QHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDY 303 (545)
Q Consensus 228 ~~f~~~~~~~~~~~~~li~~---~~-~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 303 (545)
++...... ..-..++.- .+ ..+++..|-+++- ..|- ....+..+...|-.+-+.++-.++-
T Consensus 679 E~~~~g~~---~eKKmL~RKRA~WAr~~kePkaAAEmLi---SaGe------~~KAi~i~~d~gW~d~lidI~rkld--- 743 (1081)
T KOG1538|consen 679 EFLGSGDP---KEKKMLIRKRADWARNIKEPKAAAEMLI---SAGE------HVKAIEICGDHGWVDMLIDIARKLD--- 743 (1081)
T ss_pred HHhhcCCh---HHHHHHHHHHHHHhhhcCCcHHHHHHhh---cccc------hhhhhhhhhcccHHHHHHHHHhhcc---
Confidence 55443221 111111110 00 0111222211110 1110 0011223344444444444443332
Q ss_pred CCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCc-------
Q 009066 304 GIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAA------- 376 (545)
Q Consensus 304 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~------- 376 (545)
..+.++...+..-+-+...+.-|-++|.+|+- ..+++......+++.+|..+.++.-+.-|+-..
T Consensus 744 --~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD------~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLA 815 (1081)
T KOG1538|consen 744 --KAEREPLLLCATYLKKLDSPGLAAEIFLKMGD------LKSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLA 815 (1081)
T ss_pred --hhhhhHHHHHHHHHhhccccchHHHHHHHhcc------HHHHhhheeecccchHhHhhhhhCccccccccchHHHHhh
Confidence 23455566666666777888899999999952 235566677889999999999988776665322
Q ss_pred --hhHHHHHHHHHHcCCchHHHHHHHHhhhCCC
Q 009066 377 --GCYVQLANIYAAMKKWDDVARIRLSMKENNV 407 (545)
Q Consensus 377 --~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 407 (545)
.-|..--.+|.++|+-.+|.++++++....+
T Consensus 816 E~DrFeEAqkAfhkAGr~~EA~~vLeQLtnnav 848 (1081)
T KOG1538|consen 816 ENDRFEEAQKAFHKAGRQREAVQVLEQLTNNAV 848 (1081)
T ss_pred hhhhHHHHHHHHHHhcchHHHHHHHHHhhhhhh
Confidence 0233445678999999999999998876544
No 214
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.54 E-value=0.0079 Score=43.62 Aligned_cols=61 Identities=13% Similarity=0.199 Sum_probs=48.1
Q ss_pred HHHHhHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCc
Q 009066 316 VDLLGRAGKLVEAVDLIKKM-PFKP-QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAA 376 (545)
Q Consensus 316 i~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 376 (545)
-..|.+.+++++|.++++.+ ...| +...|......+...|++++|...+++.++..|++..
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~ 64 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPD 64 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHH
Confidence 35677888888888888877 3444 5567777888888999999999999999999887764
No 215
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.45 E-value=0.059 Score=50.16 Aligned_cols=101 Identities=15% Similarity=0.131 Sum_probs=68.4
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHhHcCCHHHHHHHHHhC----CCCC-CHhHHHHHH
Q 009066 275 TFVALLLACNHAGLVDLGIQYFDSMVNDYGIAA-KPDHYTCMVDLLGRAGKLVEAVDLIKKM----PFKP-QPAIFGTLL 348 (545)
Q Consensus 275 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p-~~~~~~~li 348 (545)
.|...+......|++++|...|+.+.+.+.-.+ .+..+..+...|...|++++|...|+.+ |..| ....+-.+.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 344444444556788888888888776532111 1345667788888888888888888777 2212 234455566
Q ss_pred HHHHhcCCHHHHHHHHHHHhcCCCCCC
Q 009066 349 SACRVHKRLDLAEFAAMNLFNLNPANA 375 (545)
Q Consensus 349 ~~~~~~g~~~~A~~~~~~~~~~~p~~~ 375 (545)
..+...|+.+.|...++++++..|+..
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 677788999999999999999888864
No 216
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.43 E-value=0.005 Score=39.53 Aligned_cols=42 Identities=26% Similarity=0.253 Sum_probs=35.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHH
Q 009066 342 AIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLAN 384 (545)
Q Consensus 342 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~ 384 (545)
.+|..+..+|...|++++|+++++++++.+|++.. .+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~-a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPE-AWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHH-HHHHhhh
Confidence 36788889999999999999999999999999987 6666653
No 217
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.26 E-value=1.8 Score=45.08 Aligned_cols=301 Identities=12% Similarity=0.071 Sum_probs=174.2
Q ss_pred HHHHHHHcCCCCHHHHHHHHhcCCCCC---eehHHHHHHHHHhCC---CHHHHHHHHhhCCc--CCHhHHHHHHHHHHHc
Q 009066 43 IMLSCILLNSDDVVAAFDFFQRLPIKD---TASWNTMISGFVQKK---NMAKARDLFLAMPE--KNSVSWSAMISGYIEC 114 (545)
Q Consensus 43 ~li~~~~~~~g~~~~A~~~~~~m~~~d---~~~~~~li~~~~~~g---~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~ 114 (545)
.+|.-++.. +.+..|+++-..+..|. ...|.....-+.+.. +-+.+..+=+++.. ..-.+|..+..--..+
T Consensus 442 ~vi~Rl~~r-~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~ 520 (829)
T KOG2280|consen 442 VVIDRLVDR-HLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQE 520 (829)
T ss_pred hhhHHHHhc-chhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhc
Confidence 455566666 88888888888877554 344444455555442 23333444444444 3456777788878889
Q ss_pred CChHHHHHHHhhCCCC--------CcccHHHHHHHhcchhhhccCChHHHHHHHHHHHhCC----------CCCC-HHHH
Q 009066 115 GQLDKAVELFKVAPVK--------SVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLG----------IRPN-ASSL 175 (545)
Q Consensus 115 g~~~~A~~~f~~~~~~--------~~~~~~~li~~~~~~g~~~~g~~~~A~~~~~~m~~~~----------~~pd-~~t~ 175 (545)
|+.+-|..+.+.=+.. +..-+..-+.-. .+.|+.+-...++..|.+.- ..|. ...|
T Consensus 521 GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~ka-----ies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY 595 (829)
T KOG2280|consen 521 GRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKA-----IESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLY 595 (829)
T ss_pred CcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHH-----HhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHH
Confidence 9999999888654321 223344455555 67777777777666654321 0111 1111
Q ss_pred HHHHH---------HHhccCcHHHHHHHHHHH-Hh-CCCCCCcccHHHHHHHHHhcCCHHHHHHH----------HHhcc
Q 009066 176 SSVLL---------GCSHLSSLQLGKQVHQLV-FK-SPLCKDTTALTPLISMYCKCGDLEDACKL----------FLEIQ 234 (545)
Q Consensus 176 ~~ll~---------~~~~~~~~~~a~~~~~~~-~~-~g~~~~~~~~~~li~~y~~~g~~~~A~~~----------f~~~~ 234 (545)
.-+++ .|-...+......++-+- .+ .-+.+-........+.+++.....-..+. ++.+.
T Consensus 596 ~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le 675 (829)
T KOG2280|consen 596 RQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLE 675 (829)
T ss_pred HHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 11111 111112222222221111 00 00111122233344555554442222222 22222
Q ss_pred CC-----ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCH
Q 009066 235 RK-----DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKP 309 (545)
Q Consensus 235 ~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~ 309 (545)
.+ .-.+.+--+.-+...|+..+|.++-.+.+ -||...|-.-+.+++..+++++-.++-++.. .+
T Consensus 676 ~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk-------sP 744 (829)
T KOG2280|consen 676 DQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK-------SP 744 (829)
T ss_pred HHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC-------CC
Confidence 11 22345566777788899999999888764 6788888888899999999998777665442 24
Q ss_pred HHHHHHHHHHhHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHH
Q 009066 310 DHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMN 366 (545)
Q Consensus 310 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 366 (545)
.-|.-.+..+.+.|+.+||.+++.+.+-.+ -...+|...|++.+|.+..-+
T Consensus 745 IGy~PFVe~c~~~~n~~EA~KYiprv~~l~------ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 745 IGYLPFVEACLKQGNKDEAKKYIPRVGGLQ------EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred CCchhHHHHHHhcccHHHHhhhhhccCChH------HHHHHHHHhccHHHHHHHHHH
Confidence 456667889999999999999999984222 466778888888888776543
No 218
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.25 E-value=0.056 Score=45.50 Aligned_cols=61 Identities=16% Similarity=0.132 Sum_probs=52.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchHHHHHHHHhhh
Q 009066 343 IFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKE 404 (545)
Q Consensus 343 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 404 (545)
....++..+...|+++.|....++++..+|.+.. .|..++.+|...|+..+|.++|+.+.+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~-~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEE-AYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HH-HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4566777788999999999999999999999988 999999999999999999999988753
No 219
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.15 E-value=0.081 Score=42.94 Aligned_cols=49 Identities=14% Similarity=0.291 Sum_probs=30.6
Q ss_pred CCCCHHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHH
Q 009066 269 MKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVD 317 (545)
Q Consensus 269 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 317 (545)
..|+..+..+++.+++..|++..|.++.+...+.|+++-+..+|..|+.
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 4566666666666666666666666666666666666555555555554
No 220
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.15 E-value=0.0072 Score=44.55 Aligned_cols=22 Identities=23% Similarity=0.433 Sum_probs=9.4
Q ss_pred HHHHHHHHhHcCCHHHHHHHHH
Q 009066 312 YTCMVDLLGRAGKLVEAVDLIK 333 (545)
Q Consensus 312 ~~~li~~~~~~g~~~~A~~~~~ 333 (545)
|+.+...|.+.|++++|++.|+
T Consensus 8 ~~~la~~~~~~~~~~~A~~~~~ 29 (78)
T PF13424_consen 8 YNNLARVYRELGRYDEALDYYE 29 (78)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHH
Confidence 3444444444444444444443
No 221
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.11 E-value=0.33 Score=44.96 Aligned_cols=109 Identities=17% Similarity=0.105 Sum_probs=70.5
Q ss_pred CHHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcC---CHHHHHHHHHhC-CCCC-CHhHHHH
Q 009066 272 DSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAG---KLVEAVDLIKKM-PFKP-QPAIFGT 346 (545)
Q Consensus 272 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m-~~~p-~~~~~~~ 346 (545)
|...|..|..+|...|+.+.|...|....+ -..+++..+..+..++.... ...++..+|+++ ...| |+....-
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r--L~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALR--LAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 556676777777777777777777776665 23445555556665554322 345667777776 3344 4455555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHH
Q 009066 347 LLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLAN 384 (545)
Q Consensus 347 li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~ 384 (545)
|...+...|++.+|...++.|++..|.+. ....++.
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~--~rr~~ie 268 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPADD--PRRSLIE 268 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCCC--chHHHHH
Confidence 66678888888888888888888877765 4554443
No 222
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.00 E-value=0.076 Score=43.09 Aligned_cols=77 Identities=17% Similarity=0.274 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHccCcHHHHHHHHHHhH--------------HhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhC---
Q 009066 273 SITFVALLLACNHAGLVDLGIQYFDSMV--------------NDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM--- 335 (545)
Q Consensus 273 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~--------------~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m--- 335 (545)
+.++..++.++++.|+++....+.+..- ......|+..+..+++.+|+..|++..|+++++..
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~ 81 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRK 81 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 4455555556666666655555554321 11234455555566666666666666666555444
Q ss_pred -CCCCCHhHHHHHHH
Q 009066 336 -PFKPQPAIFGTLLS 349 (545)
Q Consensus 336 -~~~p~~~~~~~li~ 349 (545)
+++-+...|..|+.
T Consensus 82 Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 82 YPIPIPKEFWRRLLE 96 (126)
T ss_pred cCCCCCHHHHHHHHH
Confidence 33334455555554
No 223
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.99 E-value=1.1 Score=40.08 Aligned_cols=54 Identities=9% Similarity=0.014 Sum_probs=27.6
Q ss_pred hccCChHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHhccCcHHHHHHHHHHHHhC
Q 009066 148 VENSWAEDGLKLLRMMIGLGIR--PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKS 201 (545)
Q Consensus 148 ~~~g~~~~A~~~~~~m~~~~~~--pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 201 (545)
.+.|++.+|++.|+++...... --......+..++-+.|+++.|...++..++.
T Consensus 16 ~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 16 LQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5666677777777766653211 11123334455555666666666666665553
No 224
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.96 E-value=1.1 Score=40.06 Aligned_cols=199 Identities=18% Similarity=0.129 Sum_probs=94.4
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHhC-CCCCCcccHHHHHHHHHhcCCHHHHHHHHHhccCC--C-hhhHHHHHH-H
Q 009066 173 SSLSSVLLGCSHLSSLQLGKQVHQLVFKS-PLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK--D-VVTWNAMIS-G 247 (545)
Q Consensus 173 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~--~-~~~~~~li~-~ 247 (545)
..+......+...+.+..+...+...... ........+..+...+...+++..+.+.+...... + ......... .
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGA 139 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHH
Confidence 44444444555555555555555554432 12233334444555555555556666665555431 1 112222222 4
Q ss_pred HHHcCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHhHcCC
Q 009066 248 YAQHGKGEKALRLFDKMKDEGM--KPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAA-KPDHYTCMVDLLGRAGK 324 (545)
Q Consensus 248 ~~~~g~~~~A~~~~~~m~~~g~--~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~ 324 (545)
+...|++++|...|.+...... ......+......+...++.+.+...+....+. .+. ....+..+...+...++
T Consensus 140 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 140 LYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKL--NPDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh--CcccchHHHHHhhHHHHHccc
Confidence 5566666666666666643111 012222223333344555666666666555542 122 24555555555555566
Q ss_pred HHHHHHHHHhC-CCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC
Q 009066 325 LVEAVDLIKKM-PFKPQ-PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPA 373 (545)
Q Consensus 325 ~~~A~~~~~~m-~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~ 373 (545)
+++|...+... ...|+ ...+..+...+...+..+.+...+.+.....|.
T Consensus 218 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 218 YEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 66666555554 22232 233333333333444555666555555555554
No 225
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.88 E-value=0.078 Score=50.94 Aligned_cols=62 Identities=15% Similarity=0.064 Sum_probs=54.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchHHHHHHHHhhh
Q 009066 342 AIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKE 404 (545)
Q Consensus 342 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 404 (545)
.++..|...+.+.+++..|+....+.++++|++.- +...-+.+|...|.++.|+..|+++.+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~K-ALyRrG~A~l~~~e~~~A~~df~ka~k 319 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVK-ALYRRGQALLALGEYDLARDDFQKALK 319 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchh-HHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 45677778888999999999999999999999887 888889999999999999999998876
No 226
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.81 E-value=0.059 Score=52.96 Aligned_cols=61 Identities=16% Similarity=0.118 Sum_probs=45.5
Q ss_pred CHHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCH----HHHHHHHHHHhHcCCHHHHHHHHHhC
Q 009066 272 DSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKP----DHYTCMVDLLGRAGKLVEAVDLIKKM 335 (545)
Q Consensus 272 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m 335 (545)
+...++.+..+|...|++++|...|++.++. .|+. ..|..+..+|...|++++|++.+++.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL---~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrA 138 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL---NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTA 138 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4566777778888888888888888877643 5553 34778888888888888888887776
No 227
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.78 E-value=0.19 Score=41.27 Aligned_cols=72 Identities=17% Similarity=0.110 Sum_probs=45.4
Q ss_pred HHHhHcCCHHHHHHHHHhC----CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHH
Q 009066 317 DLLGRAGKLVEAVDLIKKM----PFKP-QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAA 388 (545)
Q Consensus 317 ~~~~~~g~~~~A~~~~~~m----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~ 388 (545)
....+.|++++|.+.|+.+ |..| ....--.|+.+|.+.+++++|...+++.++++|+++...|.....+++.
T Consensus 18 ~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 18 QEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSY 94 (142)
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence 3344566777777777666 3222 2234455677777788888888888888888777665455555555443
No 228
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.78 E-value=1.4 Score=39.53 Aligned_cols=218 Identities=18% Similarity=0.153 Sum_probs=158.5
Q ss_pred cCcHHHHHHHHHHHHhCCCC-CCcccHHHHHHHHHhcCCHHHHHHHHHhccC-----CChhhHHHHHHHHHHcCChHHHH
Q 009066 185 LSSLQLGKQVHQLVFKSPLC-KDTTALTPLISMYCKCGDLEDACKLFLEIQR-----KDVVTWNAMISGYAQHGKGEKAL 258 (545)
Q Consensus 185 ~~~~~~a~~~~~~~~~~g~~-~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~-----~~~~~~~~li~~~~~~g~~~~A~ 258 (545)
.+....+...+......... ............+...+++..+...+..... .....+......+...+.+.++.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 34455555555555554322 1356677788889999999999998887652 35566777777888888999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHH-HHHccCcHHHHHHHHHHhHHhcCC--CCCHHHHHHHHHHHhHcCCHHHHHHHHHhC
Q 009066 259 RLFDKMKDEGMKPDSITFVALLL-ACNHAGLVDLGIQYFDSMVNDYGI--AAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335 (545)
Q Consensus 259 ~~~~~m~~~g~~p~~~t~~~ll~-a~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 335 (545)
..+.........+. ........ ++...|+++.+...+...... .. ......+......+...++.++|...+.+.
T Consensus 116 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 193 (291)
T COG0457 116 ELLEKALALDPDPD-LAEALLALGALYELGDYEEALELYEKALEL-DPELNELAEALLALGALLEALGRYEEALELLEKA 193 (291)
T ss_pred HHHHHHHcCCCCcc-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHH
Confidence 99999887544432 22222222 788999999999999988541 11 123445555556677889999999999887
Q ss_pred -CCCCC--HhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchHHHHHHHHhhhC
Q 009066 336 -PFKPQ--PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKEN 405 (545)
Q Consensus 336 -~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 405 (545)
...++ ...+..+...+...++++.|...+.......|.... .+..+...+...|.++++...+......
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 194 LKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAE-ALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHH-HHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 33344 577888888999999999999999999999998444 6677777777778899999888877653
No 229
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.59 E-value=0.15 Score=49.06 Aligned_cols=137 Identities=14% Similarity=0.062 Sum_probs=96.4
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCC
Q 009066 245 ISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGK 324 (545)
Q Consensus 245 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 324 (545)
...|.+.|++..|...|++.... |. +...-+.++..... ..-..++..|.-.|.+.++
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~------------l~-~~~~~~~ee~~~~~---------~~k~~~~lNlA~c~lKl~~ 272 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSF------------LE-YRRSFDEEEQKKAE---------ALKLACHLNLAACYLKLKE 272 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHH------------hh-ccccCCHHHHHHHH---------HHHHHHhhHHHHHHHhhhh
Confidence 45677778888888887776542 11 11111112222211 1123457788888999999
Q ss_pred HHHHHHHHHhC-CC-CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchHH-HHHHHH
Q 009066 325 LVEAVDLIKKM-PF-KPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDV-ARIRLS 401 (545)
Q Consensus 325 ~~~A~~~~~~m-~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a-~~~~~~ 401 (545)
+.+|+..-++. .. .+|+...-.=..++...|+++.|+..|+++++++|++-. +-..|+.+-.+....++. .++|..
T Consensus 273 ~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka-~~~el~~l~~k~~~~~~kekk~y~~ 351 (397)
T KOG0543|consen 273 YKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKA-ARAELIKLKQKIREYEEKEKKMYAN 351 (397)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999887766 33 356777777788999999999999999999999999977 777888777777666554 778888
Q ss_pred hhh
Q 009066 402 MKE 404 (545)
Q Consensus 402 m~~ 404 (545)
|-.
T Consensus 352 mF~ 354 (397)
T KOG0543|consen 352 MFA 354 (397)
T ss_pred Hhh
Confidence 864
No 230
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.57 E-value=0.015 Score=42.81 Aligned_cols=62 Identities=13% Similarity=0.133 Sum_probs=50.4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhcC----CCCC--CchhHHHHHHHHHHcCCchHHHHHHHHhh
Q 009066 342 AIFGTLLSACRVHKRLDLAEFAAMNLFNL----NPAN--AAGCYVQLANIYAAMKKWDDVARIRLSMK 403 (545)
Q Consensus 342 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~p~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 403 (545)
.+++.+...|...|++++|+..+++++++ +++. ...++..++.+|...|++++|.+.+++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 57888999999999999999999998753 3322 12378899999999999999999998764
No 231
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.53 E-value=1.5 Score=43.00 Aligned_cols=35 Identities=11% Similarity=0.369 Sum_probs=29.3
Q ss_pred CCCCccHHHHHHHHHHhCCCChHHHHHHHccCCCCC
Q 009066 2 NVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPD 37 (545)
Q Consensus 2 ~~~~~~~~~~li~~~~~~g~~~~~A~~~f~~~~~~~ 37 (545)
||.|..+|-.||+-|...|. .++.++++++|..|-
T Consensus 38 NPtnI~S~fqLiq~~~tq~s-~~~~re~yeq~~~pf 72 (660)
T COG5107 38 NPTNILSYFQLIQYLETQES-MDAEREMYEQLSSPF 72 (660)
T ss_pred CchhHHHHHHHHHHHhhhhh-HHHHHHHHHHhcCCC
Confidence 57788889999999999988 999999998887543
No 232
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.39 E-value=1.1 Score=35.98 Aligned_cols=139 Identities=14% Similarity=0.157 Sum_probs=79.0
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHH
Q 009066 250 QHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAV 329 (545)
Q Consensus 250 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 329 (545)
-.|..++..++..+..... +..-++-++.-....-+-+...+.++.+-+-+.+ ..+|++....
T Consensus 14 ldG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDi--------------s~C~NlKrVi 76 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKIFDI--------------SKCGNLKRVI 76 (161)
T ss_dssp HTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-G--------------GG-S-THHHH
T ss_pred HhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------hhhcchHHHH
Confidence 3566667777777665532 3333333333222223334444455444332222 2355555555
Q ss_pred HHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchHHHHHHHHhhhCCCc
Q 009066 330 DLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVV 408 (545)
Q Consensus 330 ~~~~~m~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 408 (545)
..+-.++ .+..-...-+..+...|+-+.-.+++..+.+.+..++. ....++.+|.+.|+..++-.++++.-++|++
T Consensus 77 ~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~-~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 77 ECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPE-FLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HH-HHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHH-HHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 5555553 34455667778888999999999999988754433444 7889999999999999999999999998875
No 233
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.27 E-value=0.92 Score=40.58 Aligned_cols=56 Identities=16% Similarity=0.172 Sum_probs=32.2
Q ss_pred HHHHHHHHcCChHHHHHHHhhCCC--CC----cccHHHHHHHhcchhhhccCChHHHHHHHHHHHhC
Q 009066 106 AMISGYIECGQLDKAVELFKVAPV--KS----VVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGL 166 (545)
Q Consensus 106 ~li~~~~~~g~~~~A~~~f~~~~~--~~----~~~~~~li~~~~~~g~~~~g~~~~A~~~~~~m~~~ 166 (545)
.....+...|++++|.+.|+.+.. |+ ..+.-.++.++ ...|++++|...|++..+.
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~-----y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAY-----YKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHH-----HHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHH-----HHcCCHHHHHHHHHHHHHH
Confidence 344455566777777777765542 11 12334455666 6777777777777777654
No 234
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.20 E-value=2.3 Score=41.48 Aligned_cols=162 Identities=9% Similarity=0.043 Sum_probs=103.9
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCC--CCCH-HHHHHHHHHHHc---cCcHHHHHHHHHHhHHhcCCCCCHHHHHHHH
Q 009066 243 AMISGYAQHGKGEKALRLFDKMKDEGM--KPDS-ITFVALLLACNH---AGLVDLGIQYFDSMVNDYGIAAKPDHYTCMV 316 (545)
Q Consensus 243 ~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~-~t~~~ll~a~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li 316 (545)
.++-+|....+++..+++++.+..... .++. ..--....|+.+ .|+.++|++++..+... .-.+++++|..+.
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~-~~~~~~d~~gL~G 224 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLES-DENPDPDTLGLLG 224 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhc-cCCCChHHHHHHH
Confidence 455568899999999999999986421 1111 111123345666 89999999999885554 5678888888887
Q ss_pred HHHh----H-----cCCHHHHHHHHHhC-CCCCCHhHHHHHHHHHHhcCCHH----HHHHHH---HHHh-c---CCC-CC
Q 009066 317 DLLG----R-----AGKLVEAVDLIKKM-PFKPQPAIFGTLLSACRVHKRLD----LAEFAA---MNLF-N---LNP-AN 374 (545)
Q Consensus 317 ~~~~----~-----~g~~~~A~~~~~~m-~~~p~~~~~~~li~~~~~~g~~~----~A~~~~---~~~~-~---~~p-~~ 374 (545)
..|- . ...+++|...|.+. .++||...=-.+...+...|... +..++. ..+. + .++ .+
T Consensus 225 RIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~d 304 (374)
T PF13281_consen 225 RIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQD 304 (374)
T ss_pred HHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccccc
Confidence 7663 2 22478899988877 55666543333333333444322 222222 1111 1 222 22
Q ss_pred CchhHHHHHHHHHHcCCchHHHHHHHHhhhCC
Q 009066 375 AAGCYVQLANIYAAMKKWDDVARIRLSMKENN 406 (545)
Q Consensus 375 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 406 (545)
.. .+..++.++.-.|+.++|.+..+.|.+..
T Consensus 305 YW-d~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 305 YW-DVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred HH-HHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 33 56789999999999999999999998763
No 235
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.12 E-value=0.29 Score=41.13 Aligned_cols=71 Identities=18% Similarity=0.297 Sum_probs=42.3
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHhHH----hcCCCCCHHH
Q 009066 240 TWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN----DYGIAAKPDH 311 (545)
Q Consensus 240 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~ 311 (545)
....++..+...|++++|+.+.+.+.... +.|...+..++.++...|+..+|.+.|+.+.+ +.|+.|++.+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 34455666667777777777777777653 33566777777777777777777777766532 3466776655
No 236
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.97 E-value=0.54 Score=47.37 Aligned_cols=132 Identities=15% Similarity=0.179 Sum_probs=81.1
Q ss_pred HHHcCChHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHH
Q 009066 248 YAQHGKGEKALRLFDKMK-DEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLV 326 (545)
Q Consensus 248 ~~~~g~~~~A~~~~~~m~-~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 326 (545)
....|+++++.++.+.-. -..++ ..-...++.-+.+.|..+.|+++-..-. .-.++..++|+++
T Consensus 271 av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~~-------------~rFeLAl~lg~L~ 335 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTDPD-------------HRFELALQLGNLD 335 (443)
T ss_dssp HHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HH-------------HHHHHHHHCT-HH
T ss_pred HHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCChH-------------HHhHHHHhcCCHH
Confidence 344677777666664211 11111 3346667777777888888776643221 2345566788888
Q ss_pred HHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchHHHHHHHHhhhCC
Q 009066 327 EAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENN 406 (545)
Q Consensus 327 ~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 406 (545)
.|.++.++. ++...|..|.......|+++.|++.|.+.. -+..|+-.|...|+.+.-.++-+....+|
T Consensus 336 ~A~~~a~~~---~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~---------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 336 IALEIAKEL---DDPEKWKQLGDEALRQGNIELAEECYQKAK---------DFSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHHHHCCCC---STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHhc---CcHHHHHHHHHHHHHcCCHHHHHHHHHhhc---------CccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 888887776 477788888888888888888888888762 57777788888888777777666665554
No 237
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.89 E-value=0.27 Score=39.26 Aligned_cols=91 Identities=15% Similarity=0.103 Sum_probs=66.7
Q ss_pred HHHhHcCCHHHHHHHHHhC-CCC-CCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCc---hhHHHHHHHHHHcCC
Q 009066 317 DLLGRAGKLVEAVDLIKKM-PFK-PQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAA---GCYVQLANIYAAMKK 391 (545)
Q Consensus 317 ~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~---~~~~~l~~~~~~~g~ 391 (545)
-++...|+++.|++.|.+. .+- .....||.-..++...|+.++|+.-+++++++.-+... .+|+.-+..|...|+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 3566778888888888776 222 35677888888888888888888888888875422211 256677778888899
Q ss_pred chHHHHHHHHhhhCCC
Q 009066 392 WDDVARIRLSMKENNV 407 (545)
Q Consensus 392 ~~~a~~~~~~m~~~~~ 407 (545)
-+.|+.=|+..-+.|-
T Consensus 131 dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGS 146 (175)
T ss_pred hHHHHHhHHHHHHhCC
Confidence 8888888888777664
No 238
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.86 E-value=0.81 Score=42.93 Aligned_cols=156 Identities=13% Similarity=-0.014 Sum_probs=90.0
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHH----HHHHHHhHcCCHH
Q 009066 251 HGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYT----CMVDLLGRAGKLV 326 (545)
Q Consensus 251 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~----~li~~~~~~g~~~ 326 (545)
.|+..+|-..++++++. .+.|...+.-.=.+|...|+.+.-...++++... ..++...|. .+.-++..+|-++
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~--wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK--WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc--cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 56666777777777664 4445556666666777777777777777766642 234433332 3333445677777
Q ss_pred HHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC---CchhHHHHHHHHHHcCCchHHHHHHHH
Q 009066 327 EAVDLIKKM-PFKP-QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPAN---AAGCYVQLANIYAAMKKWDDVARIRLS 401 (545)
Q Consensus 327 ~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~ 401 (545)
+|.+.-++. .+.| |...-.++...+-..|++.++.+...+-...-... ..+.|-..+-.+...+.++.|+++|+.
T Consensus 193 dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 193 DAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred hHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 777777665 4444 44555666666777777777777665543322111 001333444555566777777777765
Q ss_pred hhhCCCcc
Q 009066 402 MKENNVVK 409 (545)
Q Consensus 402 m~~~~~~~ 409 (545)
-.-....+
T Consensus 273 ei~k~l~k 280 (491)
T KOG2610|consen 273 EIWKRLEK 280 (491)
T ss_pred HHHHHhhc
Confidence 44333333
No 239
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.83 E-value=1.3 Score=44.10 Aligned_cols=58 Identities=17% Similarity=0.130 Sum_probs=29.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhcCCCC-CCchhHHHHHHHHHHcCCchHHHHHHHHh
Q 009066 345 GTLLSACRVHKRLDLAEFAAMNLFNLNPA-NAAGCYVQLANIYAAMKKWDDVARIRLSM 402 (545)
Q Consensus 345 ~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 402 (545)
..|...+.+.|+.++|++.++.+.+..|. +.......|+.++...+.+.++..++.+-
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 33444455555555555555555554443 12224445555555555555555555543
No 240
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.81 E-value=2.8 Score=37.72 Aligned_cols=197 Identities=14% Similarity=0.126 Sum_probs=105.6
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhccCC--ChhhHHHHHHHHHHcC
Q 009066 175 LSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK--DVVTWNAMISGYAQHG 252 (545)
Q Consensus 175 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~--~~~~~~~li~~~~~~g 252 (545)
|.-...+|...+++++|...+....+. .+.+...|.+ ...++.|.-+.+++.+- -+..|+--...|..+|
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfhA-------AKayEqaamLake~~klsEvvdl~eKAs~lY~E~G 105 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFHA-------AKAYEQAAMLAKELSKLSEVVDLYEKASELYVECG 105 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHHH-------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC
Confidence 444445566667777777655555431 1222222211 12234444444444432 1234555667777777
Q ss_pred ChHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHhHHhc----CCCCCHHHHHHHHHHHhHcCCHH
Q 009066 253 KGEKALRLFDKMKD--EGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDY----GIAAKPDHYTCMVDLLGRAGKLV 326 (545)
Q Consensus 253 ~~~~A~~~~~~m~~--~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~~~~li~~~~~~g~~~ 326 (545)
.++.|-..+++.-+ .++.|+ +|++++++...-. ....-.+.|..+...|.+..+++
T Consensus 106 spdtAAmaleKAak~lenv~Pd------------------~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~ 167 (308)
T KOG1585|consen 106 SPDTAAMALEKAAKALENVKPD------------------DALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFT 167 (308)
T ss_pred CcchHHHHHHHHHHHhhcCCHH------------------HHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhh
Confidence 77776666665433 234444 3333333322110 01112334555666777777888
Q ss_pred HHHHHHHhCC-------CCCCH-hHHHHHHHHHHhcCCHHHHHHHHHHHhc----CCCCCCchhHHHHHHHHHHcCCchH
Q 009066 327 EAVDLIKKMP-------FKPQP-AIFGTLLSACRVHKRLDLAEFAAMNLFN----LNPANAAGCYVQLANIYAAMKKWDD 394 (545)
Q Consensus 327 ~A~~~~~~m~-------~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~p~~~~~~~~~l~~~~~~~g~~~~ 394 (545)
+|-..|.+-+ --|+. ..+-+.|-.+.-..++..|++.++.-.+ ..|.+.. +...|+.+| ..|+.|+
T Consensus 168 Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r-~lenLL~ay-d~gD~E~ 245 (308)
T KOG1585|consen 168 EAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSR-SLENLLTAY-DEGDIEE 245 (308)
T ss_pred HHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHH-HHHHHHHHh-ccCCHHH
Confidence 7776665441 11222 2344555556666788888888887554 3455555 777888877 4677777
Q ss_pred HHHHH
Q 009066 395 VARIR 399 (545)
Q Consensus 395 a~~~~ 399 (545)
+.++.
T Consensus 246 ~~kvl 250 (308)
T KOG1585|consen 246 IKKVL 250 (308)
T ss_pred HHHHH
Confidence 66654
No 241
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=94.73 E-value=0.2 Score=48.02 Aligned_cols=127 Identities=12% Similarity=0.027 Sum_probs=86.0
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHh----CCCCC-CcccHHHHHHHHHhcCCHHHHHHHHHhcc-------CC--Chh
Q 009066 174 SLSSVLLGCSHLSSLQLGKQVHQLVFK----SPLCK-DTTALTPLISMYCKCGDLEDACKLFLEIQ-------RK--DVV 239 (545)
Q Consensus 174 t~~~ll~~~~~~~~~~~a~~~~~~~~~----~g~~~-~~~~~~~li~~y~~~g~~~~A~~~f~~~~-------~~--~~~ 239 (545)
.|..+.+.|.-.|+++.|...|+.-+. .|-.. ....+..|.+.|.-.|+++.|.+.|+... .+ ...
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 455566666677889999888876433 33221 23456668888888899999998887643 22 234
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHc----C-CCCCHHHHHHHHHHHHccCcHHHHHHHHHHhH
Q 009066 240 TWNAMISGYAQHGKGEKALRLFDKMKDE----G-MKPDSITFVALLLACNHAGLVDLGIQYFDSMV 300 (545)
Q Consensus 240 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 300 (545)
+.-++..+|.-...+++|+.++.+-+.. + ..-....+-+|..++...|..++|..+.+...
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 5666778888778888999888764331 1 12234567788888888888888887765443
No 242
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.70 E-value=6.8 Score=41.32 Aligned_cols=99 Identities=7% Similarity=0.150 Sum_probs=63.2
Q ss_pred HHHHHhCCCChHHHHHHHccCCC--C---ChhhHHHHHHHHHcCCCCHHHHHHHHhcCCCCCeehHHHHHHHHHhCCCHH
Q 009066 13 LAGFAKQRGKLKDAQELFDKIPQ--P---DVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMA 87 (545)
Q Consensus 13 i~~~~~~g~~~~~A~~~f~~~~~--~---~~~~~~~li~~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~ 87 (545)
|+-+.+.+. +++|...-+..+. | -...|...|..+... |++++|-.+.-.|...+..-|.--+..++..++..
T Consensus 363 i~Wll~~k~-yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~-~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~ 440 (846)
T KOG2066|consen 363 IDWLLEKKK-YEEALDAAKASIGNEERFVIKKVGKTYIDHLLFE-GKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLT 440 (846)
T ss_pred HHHHHHhhH-HHHHHHHHHhccCCccccchHHHHHHHHHHHHhc-chHHHHHhhhHHHhcchHHHHHHHHHHhccccccc
Confidence 345566667 8888877776652 2 123577788888777 88888888888887777777777777777776655
Q ss_pred HHHHHHhhCCc-CCHhHHHHHHHHHHH
Q 009066 88 KARDLFLAMPE-KNSVSWSAMISGYIE 113 (545)
Q Consensus 88 ~a~~~~~~~~~-~~~~~~~~li~~~~~ 113 (545)
....+.=.-.. -++.+|..++..+..
T Consensus 441 ~Ia~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 441 DIAPYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred hhhccCCCCCcccCchHHHHHHHHHHH
Confidence 43333211111 245566666666555
No 243
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.50 E-value=1.4 Score=36.26 Aligned_cols=19 Identities=16% Similarity=-0.045 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHhcCCCCCC
Q 009066 357 LDLAEFAAMNLFNLNPANA 375 (545)
Q Consensus 357 ~~~A~~~~~~~~~~~p~~~ 375 (545)
...|...|+++++.-|++.
T Consensus 115 ~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 115 ARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHHHHHHHHHHHHHCcCCh
Confidence 4567777777777777763
No 244
>PRK11906 transcriptional regulator; Provisional
Probab=94.47 E-value=0.76 Score=45.53 Aligned_cols=77 Identities=9% Similarity=-0.014 Sum_probs=48.7
Q ss_pred HHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchHHHHHHHHhh
Q 009066 326 VEAVDLIKKM-PFKP-QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMK 403 (545)
Q Consensus 326 ~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 403 (545)
.+|.++.++. ...| |......+..+....++++.|...|+++..++|+... +|...+......|+.++|.+.+++..
T Consensus 321 ~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~-~~~~~~~~~~~~G~~~~a~~~i~~al 399 (458)
T PRK11906 321 QKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIAS-LYYYRALVHFHNEKIEEARICIDKSL 399 (458)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHH-HHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 3444444433 2223 5555555666666666677777777777777777766 77777777777777777777666643
No 245
>PRK11906 transcriptional regulator; Provisional
Probab=94.38 E-value=2.4 Score=42.10 Aligned_cols=159 Identities=9% Similarity=0.141 Sum_probs=105.7
Q ss_pred hhH--HHHHHHHHHcC-----ChHHHHHHHHHHHH-cCCCCCHHH-HHHHHHHHH---------ccCcHHHHHHHHHHhH
Q 009066 239 VTW--NAMISGYAQHG-----KGEKALRLFDKMKD-EGMKPDSIT-FVALLLACN---------HAGLVDLGIQYFDSMV 300 (545)
Q Consensus 239 ~~~--~~li~~~~~~g-----~~~~A~~~~~~m~~-~g~~p~~~t-~~~ll~a~~---------~~g~~~~a~~~~~~~~ 300 (545)
..| ..++.+..... ..+.|+.+|.+... +...|+-.. |..+..++. ......+|.++-....
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 556 55555554421 34578888888872 235665432 322222111 1234566777776666
Q ss_pred HhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhC-CCCCCH-hHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchh
Q 009066 301 NDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKPQP-AIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGC 378 (545)
Q Consensus 301 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 378 (545)
+ --+.|+.....+..++.-.|+++.|...|++. ...||. .+|......+.-.|+.++|.+.+++.++++|......
T Consensus 332 e--ld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~ 409 (458)
T PRK11906 332 D--ITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAV 409 (458)
T ss_pred h--cCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHH
Confidence 5 33556777888888888889999999999988 566765 5677777778889999999999999999999875422
Q ss_pred HH-HHHHHHHHcCCchHHHHHHH
Q 009066 379 YV-QLANIYAAMKKWDDVARIRL 400 (545)
Q Consensus 379 ~~-~l~~~~~~~g~~~~a~~~~~ 400 (545)
.. ..++.|...+ .++|.+++-
T Consensus 410 ~~~~~~~~~~~~~-~~~~~~~~~ 431 (458)
T PRK11906 410 VIKECVDMYVPNP-LKNNIKLYY 431 (458)
T ss_pred HHHHHHHHHcCCc-hhhhHHHHh
Confidence 22 3333666654 566776664
No 246
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.34 E-value=0.31 Score=44.57 Aligned_cols=57 Identities=9% Similarity=0.077 Sum_probs=34.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhcCCCCC---CchhHHHHHHHHHHcCCchHHHHHHHHhhh
Q 009066 347 LLSACRVHKRLDLAEFAAMNLFNLNPAN---AAGCYVQLANIYAAMKKWDDVARIRLSMKE 404 (545)
Q Consensus 347 li~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 404 (545)
|..++...|+++.|...|..+.+-.|+. +. ++.-|+.+..+.|+.++|..++++..+
T Consensus 184 LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApd-allKlg~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 184 LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPD-ALLKLGVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHHhcccchHHHHHHHHHHHhCCCCCCChH-HHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 5555666666666666666665544332 33 566666666666666666666666654
No 247
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=94.30 E-value=0.062 Score=31.97 Aligned_cols=32 Identities=16% Similarity=0.012 Sum_probs=25.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC
Q 009066 342 AIFGTLLSACRVHKRLDLAEFAAMNLFNLNPA 373 (545)
Q Consensus 342 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~ 373 (545)
.+|..+...+...|++++|+..++++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 46777888888888888888888888888876
No 248
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.23 E-value=2.3 Score=43.52 Aligned_cols=158 Identities=11% Similarity=0.080 Sum_probs=94.4
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC-CCCCH-----HHHHHHHHHHH----ccCcHHHHHHHHHHhHHhcCCCCCHHHH
Q 009066 243 AMISGYAQHGKGEKALRLFDKMKDEG-MKPDS-----ITFVALLLACN----HAGLVDLGIQYFDSMVNDYGIAAKPDHY 312 (545)
Q Consensus 243 ~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~-----~t~~~ll~a~~----~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 312 (545)
.+++...-.|+-+.+++++.+..+.+ +.-.. .+|..++..+. .....+.+.++++.+.++ -|+...|
T Consensus 193 kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s~lf 269 (468)
T PF10300_consen 193 KLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNSALF 269 (468)
T ss_pred HHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCcHHH
Confidence 34444444556666666665544321 22111 12333332222 245677888888888764 3444443
Q ss_pred -HHHHHHHhHcCCHHHHHHHHHhCCC-C-----CCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHH-HHHH
Q 009066 313 -TCMVDLLGRAGKLVEAVDLIKKMPF-K-----PQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYV-QLAN 384 (545)
Q Consensus 313 -~~li~~~~~~g~~~~A~~~~~~m~~-~-----p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~-~l~~ 384 (545)
-.-...+...|++++|++.|++.-. + -....+--+...+....++++|...|.++.+...-... .|. ..+-
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka-~Y~Y~~a~ 348 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKA-FYAYLAAA 348 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHH-HHHHHHHH
Confidence 3445666778888888888886510 0 12234445566677889999999999999887665544 444 4444
Q ss_pred HHHHcCCc-------hHHHHHHHHhhh
Q 009066 385 IYAAMKKW-------DDVARIRLSMKE 404 (545)
Q Consensus 385 ~~~~~g~~-------~~a~~~~~~m~~ 404 (545)
++...|+. ++|.+++++...
T Consensus 349 c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 349 CLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 56778888 778888877654
No 249
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.23 E-value=0.46 Score=43.42 Aligned_cols=110 Identities=16% Similarity=0.201 Sum_probs=83.1
Q ss_pred HHHHHHHhcc--CCChhhHHHHHHHHHHc-----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC----------
Q 009066 225 DACKLFLEIQ--RKDVVTWNAMISGYAQH-----GKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG---------- 287 (545)
Q Consensus 225 ~A~~~f~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g---------- 287 (545)
..++.|.... ++|-.+|-+++..+... +..+=....++.|.+.|+.-|..+|+.||+.+-+..
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 3456777776 67888999999888764 456666677888999999999999999998865432
Q ss_pred ------cHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHH-HHHHHHHhC
Q 009066 288 ------LVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLV-EAVDLIKKM 335 (545)
Q Consensus 288 ------~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~-~A~~~~~~m 335 (545)
.-+=++.++++|.. +|+.||-++-..|+.++++.|..- +..++.--|
T Consensus 132 F~HYP~QQ~C~I~vLeqME~-hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQMEW-HGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred HhhCchhhhHHHHHHHHHHH-cCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 23457888988865 599999999999999999988643 333443333
No 250
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=94.12 E-value=0.099 Score=30.94 Aligned_cols=33 Identities=18% Similarity=0.019 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC
Q 009066 342 AIFGTLLSACRVHKRLDLAEFAAMNLFNLNPAN 374 (545)
Q Consensus 342 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~ 374 (545)
..|..+...+...|++++|+..++++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 356677778888888888888888888888764
No 251
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.98 E-value=3.1 Score=34.50 Aligned_cols=42 Identities=19% Similarity=0.121 Sum_probs=22.4
Q ss_pred HHHHHhccCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhc
Q 009066 178 VLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKC 220 (545)
Q Consensus 178 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 220 (545)
++..+...+.......+++.+.+.+ ..+....+.++..|++.
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH
Confidence 4444444455555555555555554 24455555666666543
No 252
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.94 E-value=3.1 Score=34.45 Aligned_cols=122 Identities=16% Similarity=0.252 Sum_probs=63.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhccCC---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 009066 211 TPLISMYCKCGDLEDACKLFLEIQRK---DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG 287 (545)
Q Consensus 211 ~~li~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g 287 (545)
..++..+.+.+.......+++.+... +....|.++..|++.+ ..+.++.++. .++......++..|.+.+
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAK 83 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcC
Confidence 34666666666677777766665432 3456677777776653 3344444442 122333444566666666
Q ss_pred cHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHc-CCHHHHHHHHHhCCCCCCHhHHHHHHHHHH
Q 009066 288 LVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRA-GKLVEAVDLIKKMPFKPQPAIFGTLLSACR 352 (545)
Q Consensus 288 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~p~~~~~~~li~~~~ 352 (545)
.++++..++..+.. +...++.+... ++++.|.+++.+- .+...|..++..+.
T Consensus 84 l~~~~~~l~~k~~~----------~~~Al~~~l~~~~d~~~a~~~~~~~---~~~~lw~~~~~~~l 136 (140)
T smart00299 84 LYEEAVELYKKDGN----------FKDAIVTLIEHLGNYEKAIEYFVKQ---NNPELWAEVLKALL 136 (140)
T ss_pred cHHHHHHHHHhhcC----------HHHHHHHHHHcccCHHHHHHHHHhC---CCHHHHHHHHHHHH
Confidence 66666666654421 12222333333 5666666666653 24455655555443
No 253
>PRK15331 chaperone protein SicA; Provisional
Probab=93.77 E-value=1.4 Score=37.19 Aligned_cols=21 Identities=10% Similarity=-0.149 Sum_probs=9.5
Q ss_pred HHHHHhHcCCHHHHHHHHHhC
Q 009066 315 MVDLLGRAGKLVEAVDLIKKM 335 (545)
Q Consensus 315 li~~~~~~g~~~~A~~~~~~m 335 (545)
....|...|+.+.|...|+..
T Consensus 111 agqC~l~l~~~~~A~~~f~~a 131 (165)
T PRK15331 111 TGQCQLLMRKAAKARQCFELV 131 (165)
T ss_pred HHHHHHHhCCHHHHHHHHHHH
Confidence 344444444444444444433
No 254
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.74 E-value=11 Score=41.93 Aligned_cols=126 Identities=17% Similarity=0.144 Sum_probs=60.8
Q ss_pred CCHHHHHHHHHhccCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH----HccCcHHHHHHHH
Q 009066 221 GDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC----NHAGLVDLGIQYF 296 (545)
Q Consensus 221 g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~----~~~g~~~~a~~~~ 296 (545)
+++++|..-+.++. ...|.-.+..--++|.+.+|+.++ +|+...+..+..+| ...+.+++|--.|
T Consensus 894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Y 962 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALMY 962 (1265)
T ss_pred HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 45566655555543 223444444444555566655553 44554444443333 3344444554444
Q ss_pred HHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhCCCCCCHhH--HHHHHHHHHhcCCHHHHHHHHHHH
Q 009066 297 DSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAI--FGTLLSACRVHKRLDLAEFAAMNL 367 (545)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~--~~~li~~~~~~g~~~~A~~~~~~~ 367 (545)
+..-+ ..--+.+|..+|++.+|+.+-.++....|... -..|.+-+...+++-+|-++..+.
T Consensus 963 e~~Gk----------lekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~ 1025 (1265)
T KOG1920|consen 963 ERCGK----------LEKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEY 1025 (1265)
T ss_pred HHhcc----------HHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHH
Confidence 33211 01234455556666666666666532223222 245555666666666655555444
No 255
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=93.72 E-value=1.5 Score=41.77 Aligned_cols=122 Identities=16% Similarity=0.106 Sum_probs=56.8
Q ss_pred HHHHHHccCcHHHHHHHHHHhHHhcCCC--C--CHHHHHHHHHHHhHcCCHHHHHHHHHhC-------CCCCCHhHH---
Q 009066 279 LLLACNHAGLVDLGIQYFDSMVNDYGIA--A--KPDHYTCMVDLLGRAGKLVEAVDLIKKM-------PFKPQPAIF--- 344 (545)
Q Consensus 279 ll~a~~~~g~~~~a~~~~~~~~~~~~~~--~--~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~~~~~--- 344 (545)
+-.|....+.++++.+.|+...+--.-. | ...+|..|...|.+..++++|.-+..+. ++..-..-|
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 3345555555666666665544321111 1 1234556666666666666555443322 221111112
Q ss_pred --HHHHHHHHhcCCHHHHHHHHHHHhcC--CCC----CCchhHHHHHHHHHHcCCchHHHHHHHH
Q 009066 345 --GTLLSACRVHKRLDLAEFAAMNLFNL--NPA----NAAGCYVQLANIYAAMKKWDDVARIRLS 401 (545)
Q Consensus 345 --~~li~~~~~~g~~~~A~~~~~~~~~~--~p~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 401 (545)
.-|..+++..|....|.+.-++..++ ... ... ....++++|...|+.|.|.+-++.
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~ar-c~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQAR-CLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHH-HHHHHHHHHHhcccHhHHHHHHHH
Confidence 22334555666666666555555332 111 111 333556666666666665555443
No 256
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.59 E-value=0.81 Score=42.91 Aligned_cols=116 Identities=13% Similarity=0.067 Sum_probs=93.2
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhC-CC-CCCHhHH----HHHHHHHHhcCCHH
Q 009066 285 HAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PF-KPQPAIF----GTLLSACRVHKRLD 358 (545)
Q Consensus 285 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~----~~li~~~~~~g~~~ 358 (545)
..|+.-+|...++++.++ .+.|...+.-.=+++.-.|+.+.-...++++ |. .||...| ..+.-++...|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d--~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD--YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHh--CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 457778888888888884 4777777787888899999999888888888 33 5665333 33444566889999
Q ss_pred HHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchHHHHHHHHhh
Q 009066 359 LAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMK 403 (545)
Q Consensus 359 ~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 403 (545)
+|++..++.++++|.+.- +...+..++.-.|+..++.++...-.
T Consensus 193 dAEk~A~ralqiN~~D~W-a~Ha~aHVlem~~r~Keg~eFM~~te 236 (491)
T KOG2610|consen 193 DAEKQADRALQINRFDCW-ASHAKAHVLEMNGRHKEGKEFMYKTE 236 (491)
T ss_pred hHHHHHHhhccCCCcchH-HHHHHHHHHHhcchhhhHHHHHHhcc
Confidence 999999999999999988 88899999999999999998876543
No 257
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.55 E-value=0.45 Score=43.44 Aligned_cols=102 Identities=11% Similarity=0.060 Sum_probs=66.3
Q ss_pred HHHHhhCC--CCCcccHHHHHHHhcchhhhccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC------------
Q 009066 121 VELFKVAP--VKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLS------------ 186 (545)
Q Consensus 121 ~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~------------ 186 (545)
++.|...+ ++|-.+|-+++..+.....-..+..+-....++.|.+-|+.-|..+|..||+.+-+..
T Consensus 54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~ 133 (406)
T KOG3941|consen 54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFL 133 (406)
T ss_pred hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHh
Confidence 34455554 5566667777766633322334455555566777888888888888888887654422
Q ss_pred ----cHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCC
Q 009066 187 ----SLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGD 222 (545)
Q Consensus 187 ----~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 222 (545)
+-+-+..++++|...|+-||..+-..|++++++.+-
T Consensus 134 HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 134 HYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred hCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 223456777777777877777777777777776654
No 258
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.53 E-value=2.4 Score=42.86 Aligned_cols=150 Identities=14% Similarity=0.106 Sum_probs=82.8
Q ss_pred CCHHHHHHHHh--cCC-CCCeehHHHHHHHHHhCCCHHHHHHHHhhCCcCCHhHHHHHHHHHHHcCChHHHHHHHhhCCC
Q 009066 53 DDVVAAFDFFQ--RLP-IKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPV 129 (545)
Q Consensus 53 g~~~~A~~~~~--~m~-~~d~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~ 129 (545)
++++++.++.. .+. .-+..-.+.++.-+-+.|..+.|+++-.. + ..-.+...++|+++.|.++-++..
T Consensus 275 ~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D-----~---~~rFeLAl~lg~L~~A~~~a~~~~- 345 (443)
T PF04053_consen 275 GDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFVTD-----P---DHRFELALQLGNLDIALEIAKELD- 345 (443)
T ss_dssp T-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS------H---HHHHHHHHHCT-HHHHHHHCCCCS-
T ss_pred CChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcCC-----h---HHHhHHHHhcCCHHHHHHHHHhcC-
Confidence 67777544443 111 01123366677777777777777776432 2 234556667788888777766654
Q ss_pred CCcccHHHHHHHhcchhhhccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhCCCCCCccc
Q 009066 130 KSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTA 209 (545)
Q Consensus 130 ~~~~~~~~li~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 209 (545)
+...|..|.... ..+|+.+-|.+.|.+.. -|..++-.|...|+.+.-.++-......| -
T Consensus 346 -~~~~W~~Lg~~A-----L~~g~~~lAe~c~~k~~---------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~ 404 (443)
T PF04053_consen 346 -DPEKWKQLGDEA-----LRQGNIELAEECYQKAK---------DFSGLLLLYSSTGDREKLSKLAKIAEERG------D 404 (443)
T ss_dssp -THHHHHHHHHHH-----HHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------
T ss_pred -cHHHHHHHHHHH-----HHcCCHHHHHHHHHhhc---------CccccHHHHHHhCCHHHHHHHHHHHHHcc------C
Confidence 455777777777 77777777777776543 23444445566666666666666666555 2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHh
Q 009066 210 LTPLISMYCKCGDLEDACKLFLE 232 (545)
Q Consensus 210 ~~~li~~y~~~g~~~~A~~~f~~ 232 (545)
++....++...|++++..+++.+
T Consensus 405 ~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 405 INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 34444445555666666555543
No 259
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.50 E-value=6.5 Score=36.64 Aligned_cols=164 Identities=14% Similarity=0.088 Sum_probs=81.6
Q ss_pred HHHHHHhccCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCC
Q 009066 226 ACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGI 305 (545)
Q Consensus 226 A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 305 (545)
..+++++...+....--.........|++.+|..+|......... +......+..++...|+.+.|..++..+-.+ .
T Consensus 122 lr~~ld~~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~--~ 198 (304)
T COG3118 122 LRQFLDKVLPAEEEEALAEAKELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQ--A 198 (304)
T ss_pred HHHHHHHhcChHHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCccc--c
Confidence 344444444332222222333455667777777777776664322 2334445566667777777777777655331 1
Q ss_pred CCC-HHHHHHHHHHHhHcCCHHHHHHHHHhCCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCC--CCCCchhHHH
Q 009066 306 AAK-PDHYTCMVDLLGRAGKLVEAVDLIKKMPFKP-QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLN--PANAAGCYVQ 381 (545)
Q Consensus 306 ~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~~ 381 (545)
..+ .....+-+..+.+.....+...+-.+..-.| |...-..+...+...|+.+.|...+-.+++.+ -++.. .-..
T Consensus 199 ~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~-~Rk~ 277 (304)
T COG3118 199 QDKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGE-ARKT 277 (304)
T ss_pred hhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcH-HHHH
Confidence 111 1111223344444444444444444432234 44455556666666677777666655554432 23333 5556
Q ss_pred HHHHHHHcCCch
Q 009066 382 LANIYAAMKKWD 393 (545)
Q Consensus 382 l~~~~~~~g~~~ 393 (545)
|+..+.-.|.-+
T Consensus 278 lle~f~~~g~~D 289 (304)
T COG3118 278 LLELFEAFGPAD 289 (304)
T ss_pred HHHHHHhcCCCC
Confidence 666665555433
No 260
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.48 E-value=3.9 Score=37.34 Aligned_cols=236 Identities=16% Similarity=0.210 Sum_probs=138.1
Q ss_pred CChHHHHHHHhhCCC----CC---cccHHHHHHHhcchhhhccCChHHHHHHHHHHHhC---CC--CCCHHHHHHHHHHH
Q 009066 115 GQLDKAVELFKVAPV----KS---VVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGL---GI--RPNASSLSSVLLGC 182 (545)
Q Consensus 115 g~~~~A~~~f~~~~~----~~---~~~~~~li~~~~~~g~~~~g~~~~A~~~~~~m~~~---~~--~pd~~t~~~ll~~~ 182 (545)
..+++|+.-|++..+ +. -.+...||..+ .+.+++++.++.+++|+.- .+ .-+....++++..-
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~-----f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyi 115 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKIN-----FRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYI 115 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHH-----hccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 456666666655431 11 12344567777 7788888888888777531 11 22445677788777
Q ss_pred hccCcHHHHHHHHHHHHhC-----CCCCCcccHHHHHHHHHhcCCHHHHHHHHHhccCC---------------ChhhHH
Q 009066 183 SHLSSLQLGKQVHQLVFKS-----PLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK---------------DVVTWN 242 (545)
Q Consensus 183 ~~~~~~~~a~~~~~~~~~~-----g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~---------------~~~~~~ 242 (545)
+...+.+.-.++|+.-++. +-..=-.+-+.|...|...|++.+-.+++.++.+. -...|.
T Consensus 116 StS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYA 195 (440)
T KOG1464|consen 116 STSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYA 195 (440)
T ss_pred hhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHh
Confidence 7777777766666654331 10111123356888888888888888888877531 134677
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHH-----ccCcHHHHHHHHHHhHHhcCCCCCH-----HH
Q 009066 243 AMISGYAQHGKGEKALRLFDKMKDE-GMKPDSITFVALLLACN-----HAGLVDLGIQYFDSMVNDYGIAAKP-----DH 311 (545)
Q Consensus 243 ~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~a~~-----~~g~~~~a~~~~~~~~~~~~~~~~~-----~~ 311 (545)
.=|..|..+.+-.+...+|++.+.. .--|.... ..+++-|. +.|.+++|..-|-+..+.|.-..++ --
T Consensus 196 lEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlI-mGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLK 274 (440)
T KOG1464|consen 196 LEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLI-MGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLK 274 (440)
T ss_pred hHhhhhhhhcccHHHHHHHHHHHHhhccCCchHH-HhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHH
Confidence 7788888888888888888877652 23344433 34555554 5678887765544444544322222 23
Q ss_pred HHHHHHHHhHcCC----HHHHHHHHHhCCCC--CCHhHHHHHHHHHHhcCCHHHHHHH
Q 009066 312 YTCMVDLLGRAGK----LVEAVDLIKKMPFK--PQPAIFGTLLSACRVHKRLDLAEFA 363 (545)
Q Consensus 312 ~~~li~~~~~~g~----~~~A~~~~~~m~~~--p~~~~~~~li~~~~~~g~~~~A~~~ 363 (545)
|-.|..++.+.|- -.+|. |.+ |.....+.|+.+|..+ +..+-+++
T Consensus 275 YLVLANMLmkS~iNPFDsQEAK------PyKNdPEIlAMTnlv~aYQ~N-dI~eFE~I 325 (440)
T KOG1464|consen 275 YLVLANMLMKSGINPFDSQEAK------PYKNDPEILAMTNLVAAYQNN-DIIEFERI 325 (440)
T ss_pred HHHHHHHHHHcCCCCCcccccC------CCCCCHHHHHHHHHHHHHhcc-cHHHHHHH
Confidence 5566777777662 11111 333 4446677788887654 34433333
No 261
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.39 E-value=8.4 Score=38.65 Aligned_cols=98 Identities=14% Similarity=0.174 Sum_probs=64.1
Q ss_pred HHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhCC-C-CCCH--hHHHHHHHHHHh
Q 009066 278 ALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP-F-KPQP--AIFGTLLSACRV 353 (545)
Q Consensus 278 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~-~p~~--~~~~~li~~~~~ 353 (545)
.+..++-+.|+.++|.+.+.++.+.+...........|+..|...+.+.++..++.+-. + -|.. ..|+..+-.++.
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRa 343 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKARA 343 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHh
Confidence 45556668899999999999988754332345567788999999999999998888762 1 1333 345554433332
Q ss_pred cCC---------------HHHHHHHHHHHhcCCCCCC
Q 009066 354 HKR---------------LDLAEFAAMNLFNLNPANA 375 (545)
Q Consensus 354 ~g~---------------~~~A~~~~~~~~~~~p~~~ 375 (545)
.++ -..|.++..++.+.+|.-+
T Consensus 344 v~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp 380 (539)
T PF04184_consen 344 VGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVP 380 (539)
T ss_pred hccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCc
Confidence 332 1235577778877777654
No 262
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=93.24 E-value=0.64 Score=37.24 Aligned_cols=87 Identities=18% Similarity=0.093 Sum_probs=47.5
Q ss_pred HHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhC----CCCCCH---hHHHHHHHHHHhcC
Q 009066 283 CNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM----PFKPQP---AIFGTLLSACRVHK 355 (545)
Q Consensus 283 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~---~~~~~li~~~~~~g 355 (545)
.+..|+++.|++.|.+... -.+..+..||.-..+|.-.|+.++|++=+++. +-+ .. ..|-.-...|...|
T Consensus 53 laE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHhC
Confidence 4455666666666665553 23344566666666666666666666655544 111 11 12222233466667
Q ss_pred CHHHHHHHHHHHhcCCC
Q 009066 356 RLDLAEFAAMNLFNLNP 372 (545)
Q Consensus 356 ~~~~A~~~~~~~~~~~p 372 (545)
+.+.|..-|+.+-+++.
T Consensus 130 ~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGS 146 (175)
T ss_pred chHHHHHhHHHHHHhCC
Confidence 77777777766655543
No 263
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.05 E-value=0.99 Score=41.35 Aligned_cols=91 Identities=18% Similarity=0.218 Sum_probs=47.4
Q ss_pred ccCcHHHHHHHHHHhHHhcCC-CCCHHHHHHHHHHHhHcCCHHHHHHHHHhC----CCCCC-HhHHHHHHHHHHhcCCHH
Q 009066 285 HAGLVDLGIQYFDSMVNDYGI-AAKPDHYTCMVDLLGRAGKLVEAVDLIKKM----PFKPQ-PAIFGTLLSACRVHKRLD 358 (545)
Q Consensus 285 ~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~-~~~~~~li~~~~~~g~~~ 358 (545)
..|++..|...|...++.|.- .-.+..+--|...+...|++++|..+|..+ |-.|- +...--|.......|+.+
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d 232 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTD 232 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHH
Confidence 344556666666555553210 011233344566666666666666655554 22221 234444555556666666
Q ss_pred HHHHHHHHHhcCCCCCC
Q 009066 359 LAEFAAMNLFNLNPANA 375 (545)
Q Consensus 359 ~A~~~~~~~~~~~p~~~ 375 (545)
+|...++++.+.-|+.+
T Consensus 233 ~A~atl~qv~k~YP~t~ 249 (262)
T COG1729 233 EACATLQQVIKRYPGTD 249 (262)
T ss_pred HHHHHHHHHHHHCCCCH
Confidence 66666666666666654
No 264
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=92.78 E-value=9.2 Score=39.20 Aligned_cols=174 Identities=16% Similarity=0.198 Sum_probs=107.9
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhCCCCCCc------ccHHHHHHHHHh----cCCHHHH
Q 009066 157 LKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDT------TALTPLISMYCK----CGDLEDA 226 (545)
Q Consensus 157 ~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~------~~~~~li~~y~~----~g~~~~A 226 (545)
..+|.-+... +|| .+..++....=.|+-+.+.+.+....+.+--..+ -.|...+..++. ....+.|
T Consensus 177 ~G~f~L~lSl-LPp---~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a 252 (468)
T PF10300_consen 177 FGLFNLVLSL-LPP---KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEA 252 (468)
T ss_pred HHHHHHHHHh-CCH---HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHH
Confidence 4455555543 344 3445566666678888888888877664311111 122222222222 4568889
Q ss_pred HHHHHhccC--CChhhHHHHH-HHHHHcCChHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHccCcHHHHHHHHHHhH
Q 009066 227 CKLFLEIQR--KDVVTWNAMI-SGYAQHGKGEKALRLFDKMKDEG---MKPDSITFVALLLACNHAGLVDLGIQYFDSMV 300 (545)
Q Consensus 227 ~~~f~~~~~--~~~~~~~~li-~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 300 (545)
.++++.+.+ |+...|.-.- ..+...|+.++|++.|++..... .+.....+--+.-.+....++++|.+.|..+.
T Consensus 253 ~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~ 332 (468)
T PF10300_consen 253 EELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLL 332 (468)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHH
Confidence 999998886 6766665543 34566889999999998765311 12233445556666777889999999999988
Q ss_pred HhcCCCCCHHHHHHH-HHHHhHcCCH-------HHHHHHHHhCC
Q 009066 301 NDYGIAAKPDHYTCM-VDLLGRAGKL-------VEAVDLIKKMP 336 (545)
Q Consensus 301 ~~~~~~~~~~~~~~l-i~~~~~~g~~-------~~A~~~~~~m~ 336 (545)
+.... +...|.-+ ..+|...|+. ++|.++|.+.|
T Consensus 333 ~~s~W--Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 333 KESKW--SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred hcccc--HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 75333 34444433 3345566766 88999998873
No 265
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.71 E-value=1.7 Score=36.87 Aligned_cols=123 Identities=11% Similarity=0.000 Sum_probs=53.3
Q ss_pred HHcCChHHHHHHHhhCCCCCcccHHHHHHHhcchhhhccCChHHHHHHHHHHHhCCCCCCHH-HHHHHHH--HHhccCcH
Q 009066 112 IECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNAS-SLSSVLL--GCSHLSSL 188 (545)
Q Consensus 112 ~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~pd~~-t~~~ll~--~~~~~~~~ 188 (545)
+..+..++|+.-|..+...+--.|-.|...-.-.-..+.|+...|...|.+.-.....|-.. -..-+=. .+...|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 34555666666666655544444443332111111155666666666666665443333222 1111111 12334444
Q ss_pred HHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhcc
Q 009066 189 QLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ 234 (545)
Q Consensus 189 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~ 234 (545)
+....-.+.+-..+-+.-...-.+|.-+-.|.|++.+|.+.|..+.
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia 194 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIA 194 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHH
Confidence 4444443333333322223333444444444555555555554443
No 266
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=92.64 E-value=9.3 Score=36.10 Aligned_cols=16 Identities=19% Similarity=-0.313 Sum_probs=9.8
Q ss_pred HHhcCCHHHHHHHHHH
Q 009066 351 CRVHKRLDLAEFAAMN 366 (545)
Q Consensus 351 ~~~~g~~~~A~~~~~~ 366 (545)
+.+.++++.|...|+-
T Consensus 256 ~~~~k~y~~A~~w~~~ 271 (278)
T PF08631_consen 256 HYKAKNYDEAIEWYEL 271 (278)
T ss_pred HHhhcCHHHHHHHHHH
Confidence 4456667776666653
No 267
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=92.25 E-value=0.46 Score=41.13 Aligned_cols=87 Identities=16% Similarity=0.183 Sum_probs=67.6
Q ss_pred HHhHcCCHHHHHHHHHhC--CCCC-----CHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcC
Q 009066 318 LLGRAGKLVEAVDLIKKM--PFKP-----QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMK 390 (545)
Q Consensus 318 ~~~~~g~~~~A~~~~~~m--~~~p-----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g 390 (545)
-+.+.|++++|..-|... .+.+ -...|..-..++.+.+.++.|+.-..++++++|.... +...-+.+|.+..
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~k-Al~RRAeayek~e 182 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEK-ALERRAEAYEKME 182 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHH-HHHHHHHHHHhhh
Confidence 455678888887777655 1111 2234555566778899999999999999999998877 7778888999999
Q ss_pred CchHHHHHHHHhhhC
Q 009066 391 KWDDVARIRLSMKEN 405 (545)
Q Consensus 391 ~~~~a~~~~~~m~~~ 405 (545)
++++|+.=++.+.+.
T Consensus 183 k~eealeDyKki~E~ 197 (271)
T KOG4234|consen 183 KYEEALEDYKKILES 197 (271)
T ss_pred hHHHHHHHHHHHHHh
Confidence 999999999998774
No 268
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=91.71 E-value=10 Score=34.61 Aligned_cols=168 Identities=15% Similarity=0.157 Sum_probs=97.1
Q ss_pred HHhcCCHHHHHHHHHhccCCC------hhhHHHHHHHHHHcCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHH---cc
Q 009066 217 YCKCGDLEDACKLFLEIQRKD------VVTWNAMISGYAQHGKGEKALRLFDKMKDE-GMKPDSITFVALLLACN---HA 286 (545)
Q Consensus 217 y~~~g~~~~A~~~f~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~a~~---~~ 286 (545)
-.+.|++++|.+.|+.+..+. ..+--.++-++-+.+++++|+..+++.... +-.||. -|..-|.+.+ ..
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~-dY~~YlkgLs~~~~i 122 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA-DYAYYLKGLSYFFQI 122 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh-hHHHHHHHHHHhccC
Confidence 345788888888888887532 234445566777888888888888887764 333433 3333333332 11
Q ss_pred ----Cc---HHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhCCCCCCHhH-H-HHHHHHHHhcCCH
Q 009066 287 ----GL---VDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAI-F-GTLLSACRVHKRL 357 (545)
Q Consensus 287 ----g~---~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~-~-~~li~~~~~~g~~ 357 (545)
.+ ..+|..-|+.++.++ +.+..+ ..|..-+..+ .|... + ..+..-|.+.|.+
T Consensus 123 ~~~~rDq~~~~~A~~~f~~~i~ry--PnS~Ya--------------~dA~~~i~~~---~d~LA~~Em~IaryY~kr~~~ 183 (254)
T COG4105 123 DDVTRDQSAARAAFAAFKELVQRY--PNSRYA--------------PDAKARIVKL---NDALAGHEMAIARYYLKRGAY 183 (254)
T ss_pred CccccCHHHHHHHHHHHHHHHHHC--CCCcch--------------hhHHHHHHHH---HHHHHHHHHHHHHHHHHhcCh
Confidence 12 233444444444432 111111 1111111111 01111 1 2345668899999
Q ss_pred HHHHHHHHHHhcCCCCCCc--hhHHHHHHHHHHcCCchHHHHHHHHhhh
Q 009066 358 DLAEFAAMNLFNLNPANAA--GCYVQLANIYAAMKKWDDVARIRLSMKE 404 (545)
Q Consensus 358 ~~A~~~~~~~~~~~p~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 404 (545)
..|..-++.+++.-|+.+. .++..|..+|...|..++|.+.-+-+..
T Consensus 184 ~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 184 VAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 9999999999887665433 1566778889999999999887766544
No 269
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=91.45 E-value=12 Score=34.91 Aligned_cols=136 Identities=12% Similarity=0.103 Sum_probs=79.5
Q ss_pred HHhccCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhccCCC----hhhHHHHHHHHHHcCChHH
Q 009066 181 GCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKD----VVTWNAMISGYAQHGKGEK 256 (545)
Q Consensus 181 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~----~~~~~~li~~~~~~g~~~~ 256 (545)
.....+++..+..++....... +.+....-.|...|...|+.+.|..++..++... .....+-|..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 4567788889999888888765 2335566678889999999999999999887532 1122223444444444444
Q ss_pred HHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHh
Q 009066 257 ALRLFDKMKDEGMKP-DSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLG 320 (545)
Q Consensus 257 A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 320 (545)
...+-++.-. .| |...-..+...+...|+.++|.+.+-.+.++..---|...-..|++.+.
T Consensus 222 ~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~ 283 (304)
T COG3118 222 IQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFE 283 (304)
T ss_pred HHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHH
Confidence 4444444432 34 3444445556666777777776665555443222223333344444333
No 270
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=91.41 E-value=5.1 Score=38.28 Aligned_cols=56 Identities=16% Similarity=0.045 Sum_probs=34.2
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHhCCC-----CCCcccHHHHHHHHHhcCCHHHHHHHHH
Q 009066 176 SSVLLGCSHLSSLQLGKQVHQLVFKSPL-----CKDTTALTPLISMYCKCGDLEDACKLFL 231 (545)
Q Consensus 176 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~-----~~~~~~~~~li~~y~~~g~~~~A~~~f~ 231 (545)
.++..++...+.++++.+.|+.+.+.-. -....++-+|...|.+..|+++|.-+..
T Consensus 126 l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~ 186 (518)
T KOG1941|consen 126 LSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPC 186 (518)
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhH
Confidence 3455666667777777777776655311 1134566677777777777777655443
No 271
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=91.27 E-value=0.43 Score=30.37 Aligned_cols=25 Identities=20% Similarity=0.329 Sum_probs=13.8
Q ss_pred HHHHHHHHHhHcCCHHHHHHHHHhC
Q 009066 311 HYTCMVDLLGRAGKLVEAVDLIKKM 335 (545)
Q Consensus 311 ~~~~li~~~~~~g~~~~A~~~~~~m 335 (545)
++..+...|.+.|++++|.++|++.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~ 27 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRA 27 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3445555555555555555555555
No 272
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.10 E-value=15 Score=39.18 Aligned_cols=47 Identities=11% Similarity=0.130 Sum_probs=19.9
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHH
Q 009066 248 YAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQY 295 (545)
Q Consensus 248 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 295 (545)
|....+..+-..+++.+.+.|+. +...-..|+.+|.+.++.+.-.++
T Consensus 407 fLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~ef 453 (933)
T KOG2114|consen 407 FLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEF 453 (933)
T ss_pred hcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHH
Confidence 33333444444444444444433 222223344455555554444433
No 273
>PRK09687 putative lyase; Provisional
Probab=91.00 E-value=14 Score=34.85 Aligned_cols=26 Identities=8% Similarity=-0.188 Sum_probs=12.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhcCCC
Q 009066 346 TLLSACRVHKRLDLAEFAAMNLFNLNP 372 (545)
Q Consensus 346 ~li~~~~~~g~~~~A~~~~~~~~~~~p 372 (545)
..+.++...|+. +|...+.++.+.+|
T Consensus 240 ~a~~ALg~ig~~-~a~p~L~~l~~~~~ 265 (280)
T PRK09687 240 LIIEAAGELGDK-TLLPVLDTLLYKFD 265 (280)
T ss_pred HHHHHHHhcCCH-hHHHHHHHHHhhCC
Confidence 344445555553 45555555555444
No 274
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=90.85 E-value=8.8 Score=36.51 Aligned_cols=127 Identities=13% Similarity=0.209 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHhCCCCCCcccHHHHHHHHHh--c----CCHHHHHHHHHhccCC-------ChhhHHHHHHHHHHcCC--
Q 009066 189 QLGKQVHQLVFKSPLCKDTTALTPLISMYCK--C----GDLEDACKLFLEIQRK-------DVVTWNAMISGYAQHGK-- 253 (545)
Q Consensus 189 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~--~----g~~~~A~~~f~~~~~~-------~~~~~~~li~~~~~~g~-- 253 (545)
++...+++.+.+.|+..+..++-+..-.... . -....|..+|+.|.+. +-..+..|+.. ..++
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 3444555555555555555444432222222 1 1244566666666542 33344444433 2222
Q ss_pred --hHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHccCc--HHHHHHHHHHhHHhcCCCCCHHHHHHHHHH
Q 009066 254 --GEKALRLFDKMKDEGMKPDSI--TFVALLLACNHAGL--VDLGIQYFDSMVNDYGIAAKPDHYTCMVDL 318 (545)
Q Consensus 254 --~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 318 (545)
.+.+..+|+.+.+.|...+.. ....++..+..... +..+.++++.+.+. ++++...+|..+.-+
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~-~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKN-GVKIKYMHYPTLGLL 226 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHc-CCccccccccHHHHH
Confidence 345667777777767655433 33334433332222 34667777777665 888877777655443
No 275
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=90.82 E-value=18 Score=35.84 Aligned_cols=40 Identities=5% Similarity=0.052 Sum_probs=26.9
Q ss_pred CccHHHHHHHHHHhCCCChHHHHHHHccCCC--------CChhhHHHHH
Q 009066 5 TTVNWNSVLAGFAKQRGKLKDAQELFDKIPQ--------PDVVSYNIML 45 (545)
Q Consensus 5 ~~~~~~~li~~~~~~g~~~~~A~~~f~~~~~--------~~~~~~~~li 45 (545)
|-+.-+..+....+.|+ +.+++.++++|.+ -++.+||-++
T Consensus 127 df~l~~i~a~sLIe~g~-f~EgR~iLn~i~~~llkrE~~w~~d~yd~~v 174 (549)
T PF07079_consen 127 DFFLDEIEAHSLIETGR-FSEGRAILNRIIERLLKRECEWNSDMYDRAV 174 (549)
T ss_pred HHHHHHHHHHHHHhcCC-cchHHHHHHHHHHHHhhhhhcccHHHHHHHH
Confidence 33445666777777888 8888888877752 4566666643
No 276
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=90.77 E-value=26 Score=37.46 Aligned_cols=189 Identities=14% Similarity=0.148 Sum_probs=101.9
Q ss_pred CCCccHHHHHHHHHHhCCCChHHHHHHHccCCCCChhhHHHHHHHHHcCCCCHHHHHHHHhcCC---CCCee------hH
Q 009066 3 VKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP---IKDTA------SW 73 (545)
Q Consensus 3 ~~~~~~~~~li~~~~~~g~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~~g~~~~A~~~~~~m~---~~d~~------~~ 73 (545)
+.++.-|..||.+-.+| ++-+.+-+.--|+.+..+.--+...+.....+++.|...+++.. +++.. .-
T Consensus 27 ~~~l~~Y~kLI~~ai~C---L~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~ 103 (608)
T PF10345_consen 27 EEQLKQYYKLIATAIKC---LEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQ 103 (608)
T ss_pred hhhHHHHHHHHHHHHHH---HHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 34556677777777776 55444422222233455666666777766688999998888764 22211 12
Q ss_pred HHHHHHHHhCCCHHHHHHHHhhCCcC------CH--hHHHHH-HHHHHHcCChHHHHHHHhhCCC-----CC--cccHHH
Q 009066 74 NTMISGFVQKKNMAKARDLFLAMPEK------NS--VSWSAM-ISGYIECGQLDKAVELFKVAPV-----KS--VVAWTA 137 (545)
Q Consensus 74 ~~li~~~~~~g~~~~a~~~~~~~~~~------~~--~~~~~l-i~~~~~~g~~~~A~~~f~~~~~-----~~--~~~~~~ 137 (545)
..++..+.+.+... |+...++.++. +. ..+.-+ +..+...++...|.+.++.+.. .| +...-.
T Consensus 104 ~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~ 182 (608)
T PF10345_consen 104 FLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLAS 182 (608)
T ss_pred HHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHH
Confidence 23455565555554 77777765521 11 122222 2233334788888888876541 12 223333
Q ss_pred HHHHhcchhhhccCChHHHHHHHHHHHhCC---------CCCCHHHHHHHHHHHh--ccCcHHHHHHHHHHH
Q 009066 138 MISGYMKFGYVENSWAEDGLKLLRMMIGLG---------IRPNASSLSSVLLGCS--HLSSLQLGKQVHQLV 198 (545)
Q Consensus 138 li~~~~~~g~~~~g~~~~A~~~~~~m~~~~---------~~pd~~t~~~ll~~~~--~~~~~~~a~~~~~~~ 198 (545)
++.+... ...+.++++++.++++.... -.|--.+|..++..++ ..|+++.+.+..+.+
T Consensus 183 l~~~~l~---l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 183 LSEALLH---LRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHHH---hcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3333321 44566677777777663321 1234456666666654 456666666655544
No 277
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=90.59 E-value=1.3 Score=41.28 Aligned_cols=61 Identities=20% Similarity=0.228 Sum_probs=47.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchHHHHHHHHhhh
Q 009066 343 IFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKE 404 (545)
Q Consensus 343 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 404 (545)
++..++..+...|+.+.+...+++++..+|-+.. .|..|+.+|...|+...|...++.+.+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~-~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEP-AYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchH-HHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 4555666777777788888888888888887776 788888888888888888888877765
No 278
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=90.53 E-value=0.35 Score=28.55 Aligned_cols=31 Identities=16% Similarity=0.019 Sum_probs=22.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC
Q 009066 343 IFGTLLSACRVHKRLDLAEFAAMNLFNLNPA 373 (545)
Q Consensus 343 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~ 373 (545)
+|..+...|...|++++|...|++.++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4666667777777777777777777777663
No 279
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=90.46 E-value=2.1 Score=39.93 Aligned_cols=75 Identities=19% Similarity=0.310 Sum_probs=60.0
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHhccCC---ChhhHHHHHHHHHHcCChHHHHHHHHHHHH-----cCCCCCHHHHHHH
Q 009066 208 TALTPLISMYCKCGDLEDACKLFLEIQRK---DVVTWNAMISGYAQHGKGEKALRLFDKMKD-----EGMKPDSITFVAL 279 (545)
Q Consensus 208 ~~~~~li~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~t~~~l 279 (545)
.++..++..+..+|+.+.+...++++... |...|..++.+|.+.|+...|+..|+++.. .|+.|-..+....
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 35667888899999999999999888753 667899999999999999999999998765 4677776665555
Q ss_pred HHH
Q 009066 280 LLA 282 (545)
Q Consensus 280 l~a 282 (545)
..+
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 444
No 280
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=90.26 E-value=13 Score=33.08 Aligned_cols=162 Identities=15% Similarity=0.080 Sum_probs=76.2
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHH
Q 009066 239 VTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDL 318 (545)
Q Consensus 239 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 318 (545)
..||-+.--+...|+++.|.+.|+...+....-+-...|. .-++.-.|++..|.+-+...-+.-.-.|-...|--++.
T Consensus 100 ~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNR-gi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E- 177 (297)
T COG4785 100 EVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNR-GIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE- 177 (297)
T ss_pred HHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcc-ceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHH-
Confidence 4566666666666666666666666665432211111111 11233446666665555444332111111122222211
Q ss_pred HhHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC-------CchhHHHHHHHHHHcCC
Q 009066 319 LGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPAN-------AAGCYVQLANIYAAMKK 391 (545)
Q Consensus 319 ~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~-------~~~~~~~l~~~~~~~g~ 391 (545)
+.-+..+|..-+.+--..-|..-|..-|..+---.=.+ +.+++++..-..++ +. +|.-|+.-|...|+
T Consensus 178 --~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~--e~l~~~~~a~a~~n~~~Ae~LTE-tyFYL~K~~l~~G~ 252 (297)
T COG4785 178 --QKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISE--ETLMERLKADATDNTSLAEHLTE-TYFYLGKYYLSLGD 252 (297)
T ss_pred --hhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccH--HHHHHHHHhhccchHHHHHHHHH-HHHHHHHHHhcccc
Confidence 22344444433222111234444554444332211111 11222222111111 23 88999999999999
Q ss_pred chHHHHHHHHhhhCCC
Q 009066 392 WDDVARIRLSMKENNV 407 (545)
Q Consensus 392 ~~~a~~~~~~m~~~~~ 407 (545)
.++|..+|+.....++
T Consensus 253 ~~~A~~LfKLaiannV 268 (297)
T COG4785 253 LDEATALFKLAVANNV 268 (297)
T ss_pred HHHHHHHHHHHHHHhH
Confidence 9999999998776543
No 281
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=90.24 E-value=4.6 Score=35.10 Aligned_cols=58 Identities=26% Similarity=0.323 Sum_probs=39.4
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHhccCCC------hhhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 009066 209 ALTPLISMYCKCGDLEDACKLFLEIQRKD------VVTWNAMISGYAQHGKGEKALRLFDKMKD 266 (545)
Q Consensus 209 ~~~~li~~y~~~g~~~~A~~~f~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 266 (545)
.+..+.+.|.+.|+.+.|.+.|.++.+.. +..+-.+|......|++..+...+.+...
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 44567777788888888888887776532 23456666666777777777777666654
No 282
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=90.24 E-value=0.72 Score=27.81 Aligned_cols=26 Identities=27% Similarity=0.387 Sum_probs=16.7
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHH
Q 009066 240 TWNAMISGYAQHGKGEKALRLFDKMK 265 (545)
Q Consensus 240 ~~~~li~~~~~~g~~~~A~~~~~~m~ 265 (545)
+|+.|...|.+.|++++|+++|++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35666677777777777777777644
No 283
>PRK09687 putative lyase; Provisional
Probab=90.05 E-value=17 Score=34.29 Aligned_cols=82 Identities=9% Similarity=0.045 Sum_probs=35.0
Q ss_pred ccCCCCChhhHHHHHHHHHcCCCCHHHHHHHHhcC-CCCCeehHHHHHHHHHhCCCH----HHHHHHHhhC--CcCCHhH
Q 009066 31 DKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRL-PIKDTASWNTMISGFVQKKNM----AKARDLFLAM--PEKNSVS 103 (545)
Q Consensus 31 ~~~~~~~~~~~~~li~~~~~~~g~~~~A~~~~~~m-~~~d~~~~~~li~~~~~~g~~----~~a~~~~~~~--~~~~~~~ 103 (545)
+.+..+|.......+.++... |.. ++...+..+ ..+|...-...+.++++.|+. +++...+..+ .+++..+
T Consensus 30 ~~L~d~d~~vR~~A~~aL~~~-~~~-~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D~d~~V 107 (280)
T PRK09687 30 RLLDDHNSLKRISSIRVLQLR-GGQ-DVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALEDKSACV 107 (280)
T ss_pred HHHhCCCHHHHHHHHHHHHhc-Ccc-hHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcCCCHHH
Confidence 333445554444444444444 332 222222222 234444444444555555542 3444444443 2344555
Q ss_pred HHHHHHHHHHc
Q 009066 104 WSAMISGYIEC 114 (545)
Q Consensus 104 ~~~li~~~~~~ 114 (545)
-...+.+++..
T Consensus 108 R~~A~~aLG~~ 118 (280)
T PRK09687 108 RASAINATGHR 118 (280)
T ss_pred HHHHHHHHhcc
Confidence 54445444443
No 284
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.92 E-value=14 Score=33.18 Aligned_cols=62 Identities=8% Similarity=-0.031 Sum_probs=33.7
Q ss_pred HHHHHHhHc-CCHHHHHHHHHhC-----CCCCCHhHHHHHHH---HHHhcCCHHHHHHHHHHHhcCCCCCC
Q 009066 314 CMVDLLGRA-GKLVEAVDLIKKM-----PFKPQPAIFGTLLS---ACRVHKRLDLAEFAAMNLFNLNPANA 375 (545)
Q Consensus 314 ~li~~~~~~-g~~~~A~~~~~~m-----~~~p~~~~~~~li~---~~~~~g~~~~A~~~~~~~~~~~p~~~ 375 (545)
.+.+.|-.. .++++|+..|++. +.+.+...--.++. --+..+++.+|+.+|+++.....+++
T Consensus 118 ~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~ 188 (288)
T KOG1586|consen 118 EIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNN 188 (288)
T ss_pred hHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 344444333 4556666665554 11222222223332 33567889999999999876554443
No 285
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=89.82 E-value=0.42 Score=28.85 Aligned_cols=23 Identities=13% Similarity=-0.074 Sum_probs=10.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Q 009066 344 FGTLLSACRVHKRLDLAEFAAMN 366 (545)
Q Consensus 344 ~~~li~~~~~~g~~~~A~~~~~~ 366 (545)
|..|...|...|++++|+.++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 34444444444444444444444
No 286
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.71 E-value=2.7 Score=37.81 Aligned_cols=20 Identities=15% Similarity=0.160 Sum_probs=9.2
Q ss_pred HHHHHHHcCChHHHHHHHhh
Q 009066 107 MISGYIECGQLDKAVELFKV 126 (545)
Q Consensus 107 li~~~~~~g~~~~A~~~f~~ 126 (545)
.|-.|.-..++..|.+.|+.
T Consensus 196 ~ilv~L~~~Dyv~aekc~r~ 215 (308)
T KOG1585|consen 196 AILVYLYAHDYVQAEKCYRD 215 (308)
T ss_pred HHHHHhhHHHHHHHHHHhcc
Confidence 33334444455555555543
No 287
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=89.25 E-value=11 Score=30.69 Aligned_cols=139 Identities=11% Similarity=0.189 Sum_probs=69.6
Q ss_pred hccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHH
Q 009066 148 VENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC 227 (545)
Q Consensus 148 ~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 227 (545)
.-.|..++..++..+..... +..-++.++--....-+-+-..++++.+ |--.|.. .||++....
T Consensus 13 ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsI---GkiFDis----------~C~NlKrVi 76 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSI---GKIFDIS----------KCGNLKRVI 76 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHH---GGGS-GG----------G-S-THHHH
T ss_pred HHhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHH---hhhcCch----------hhcchHHHH
Confidence 34555666677777666432 3333444433322223333333333333 2222322 244444444
Q ss_pred HHHHhccCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCC
Q 009066 228 KLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGI 305 (545)
Q Consensus 228 ~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 305 (545)
..+-.+.. +.......+..+...|+-+.-.+++.++.+ +-+|+......+..||.+.|+..++.+++.+..++ |+
T Consensus 77 ~C~~~~n~-~se~vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek-G~ 151 (161)
T PF09205_consen 77 ECYAKRNK-LSEYVDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEK-GL 151 (161)
T ss_dssp HHHHHTT----HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT-T-
T ss_pred HHHHHhcc-hHHHHHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh-ch
Confidence 44333321 233344556777788888888888888765 34667777778888888888888888888887765 54
No 288
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.01 E-value=9.4 Score=32.56 Aligned_cols=50 Identities=12% Similarity=0.012 Sum_probs=23.9
Q ss_pred hHcCCHHHHHHHHHhCCCCCCH---hHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 009066 320 GRAGKLVEAVDLIKKMPFKPQP---AIFGTLLSACRVHKRLDLAEFAAMNLFN 369 (545)
Q Consensus 320 ~~~g~~~~A~~~~~~m~~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~ 369 (545)
...|.+++...-.+.+....++ ..-..|.-+-.+.|++..|...|.++..
T Consensus 143 vD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 143 VDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred hccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 3455555555555554111111 2223344444556666666666665544
No 289
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=88.71 E-value=46 Score=37.37 Aligned_cols=139 Identities=15% Similarity=0.080 Sum_probs=78.6
Q ss_pred HHHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHH
Q 009066 213 LISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 292 (545)
Q Consensus 213 li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 292 (545)
.++.--+.|.+.+|..++.--.+.--..|.+...-+.+.+.+++|.-.|+..-+. .-.+.+|...|++.++
T Consensus 914 ~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~ 984 (1265)
T KOG1920|consen 914 CKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL---------EKALKAYKECGDWREA 984 (1265)
T ss_pred HHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHH
Confidence 3333344455555555443222222334445555555677888888777765321 2346677888888888
Q ss_pred HHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009066 293 IQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNL 367 (545)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 367 (545)
..+..++.. +-..-..+-..|+.-+...++.-+|-++..+....|. -.+..+++...+++|.++....
T Consensus 985 l~~a~ql~~--~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~~-----~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 985 LSLAAQLSE--GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSDPE-----EAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred HHHHHhhcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCHH-----HHHHHHhhHhHHHHHHHHHHhc
Confidence 888876642 1111222335677778888888888887777632222 2233444555566666555444
No 290
>PRK11619 lytic murein transglycosylase; Provisional
Probab=88.49 E-value=39 Score=36.24 Aligned_cols=136 Identities=7% Similarity=0.031 Sum_probs=69.3
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHhcCCCCCe---ehHHHHHHHHHhCCCHHHHHHHHhhCCc-C-CHhHHHHHHHHHHHcC
Q 009066 41 YNIMLSCILLNSDDVVAAFDFFQRLPIKDT---ASWNTMISGFVQKKNMAKARDLFLAMPE-K-NSVSWSAMISGYIECG 115 (545)
Q Consensus 41 ~~~li~~~~~~~g~~~~A~~~~~~m~~~d~---~~~~~li~~~~~~g~~~~a~~~~~~~~~-~-~~~~~~~li~~~~~~g 115 (545)
|.....+ ++. |+...+.++-..+..... ..|..+..... ....++....+++-.. | ....-...+..+.+.+
T Consensus 37 f~~A~~a-~~~-g~~~~~~~~~~~l~d~pL~~yl~y~~L~~~l~-~~~~~ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~ 113 (644)
T PRK11619 37 YQQIKQA-WDN-RQMDVVEQLMPTLKDYPLYPYLEYRQLTQDLM-NQPAVQVTNFIRANPTLPPARSLQSRFVNELARRE 113 (644)
T ss_pred HHHHHHH-HHC-CCHHHHHHHHHhccCCCcHhHHHHHHHHhccc-cCCHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcc
Confidence 3344443 455 677777777776652212 22333322221 2245556665555432 1 1223344555566677
Q ss_pred ChHHHHHHHhhCCCCCcccHHHHHHHhcchhhhccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC
Q 009066 116 QLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLS 186 (545)
Q Consensus 116 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~ 186 (545)
+++.-.+.+..- ..+...-.....+. ...|+.++|....+.+-..| ...+.....++..+.+.|
T Consensus 114 ~w~~~~~~~~~~-p~~~~~~c~~~~A~-----~~~G~~~~A~~~a~~lW~~g-~~~p~~cd~l~~~~~~~g 177 (644)
T PRK11619 114 DWRGLLAFSPEK-PKPVEARCNYYYAK-----WATGQQQEAWQGAKELWLTG-KSLPNACDKLFSVWQQSG 177 (644)
T ss_pred CHHHHHHhcCCC-CCCHHHHHHHHHHH-----HHcCCHHHHHHHHHHHhccC-CCCChHHHHHHHHHHHcC
Confidence 777777633222 23443334445555 66777777776666665554 223445555555555433
No 291
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=88.42 E-value=6.4 Score=30.04 Aligned_cols=62 Identities=15% Similarity=0.189 Sum_probs=45.6
Q ss_pred HHHHHHcCChHHHHHHHhhCCCCCcccHHHHHHHhcchhhhccCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 009066 108 ISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSS 177 (545)
Q Consensus 108 i~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ 177 (545)
+..+...|++++|..+.+.+..||...|-+|-.. +.|..+++..-+.+|...| .|...+|..
T Consensus 46 lsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~-------rlGl~s~l~~rl~rla~sg-~p~lq~Faa 107 (115)
T TIGR02508 46 LSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW-------RLGLGSALESRLNRLAASG-DPRLQTFVA 107 (115)
T ss_pred HHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH-------hhccHHHHHHHHHHHHhCC-CHHHHHHHH
Confidence 3456678999999999999989999999887664 3566666777777777776 555555543
No 292
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.36 E-value=5.4 Score=37.34 Aligned_cols=98 Identities=14% Similarity=0.200 Sum_probs=74.2
Q ss_pred CCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhccCC---------ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC
Q 009066 201 SPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK---------DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKP 271 (545)
Q Consensus 201 ~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~---------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 271 (545)
.|.+....+...++..-....+++++...+-++... ...+|-.++. .-++++++.++..=+..|+-|
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll----ky~pq~~i~~l~npIqYGiF~ 133 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL----KYDPQKAIYTLVNPIQYGIFP 133 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH----ccChHHHHHHHhCcchhcccc
Confidence 455666667777777777778899998888777642 2233333332 336779999998888999999
Q ss_pred CHHHHHHHHHHHHccCcHHHHHHHHHHhHHh
Q 009066 272 DSITFVALLLACNHAGLVDLGIQYFDSMVND 302 (545)
Q Consensus 272 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 302 (545)
|..|+..++..+.+.+++.+|.++...|+..
T Consensus 134 dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 134 DQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred chhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 9999999999999999999998887776653
No 293
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=88.22 E-value=27 Score=34.09 Aligned_cols=150 Identities=12% Similarity=-0.002 Sum_probs=74.8
Q ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHccCcHHHHHHHHHHhHHh-cCCCCCHHH
Q 009066 236 KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKP---DSITFVALLLACNHAGLVDLGIQYFDSMVND-YGIAAKPDH 311 (545)
Q Consensus 236 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~ 311 (545)
....+|..++..+.+.|+++.|...+.++...+..+ +......-....-..|+..+|...++...+. ..-..+...
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~ 223 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccccc
Confidence 345577888888888888888888888877643211 2223333344455667778888777766652 111101111
Q ss_pred HHHHHHHHhHcCCHHHHHHH-HHhCCCCCCHhHHHHHHHHHH------hcCCHHHHHHHHHHHhcCCCCCCchhHHHHHH
Q 009066 312 YTCMVDLLGRAGKLVEAVDL-IKKMPFKPQPAIFGTLLSACR------VHKRLDLAEFAAMNLFNLNPANAAGCYVQLAN 384 (545)
Q Consensus 312 ~~~li~~~~~~g~~~~A~~~-~~~m~~~p~~~~~~~li~~~~------~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~ 384 (545)
...+...+.. ..+..... ........-...+..+..-+. ..+..+.+...|.++.++.|+... +|..++.
T Consensus 224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k-~~~~~a~ 300 (352)
T PF02259_consen 224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEK-AWHSWAL 300 (352)
T ss_pred HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHH-HHHHHHH
Confidence 1111111000 00000000 000000000112222222222 237788889999999999888766 6776666
Q ss_pred HHHH
Q 009066 385 IYAA 388 (545)
Q Consensus 385 ~~~~ 388 (545)
.+.+
T Consensus 301 ~~~~ 304 (352)
T PF02259_consen 301 FNDK 304 (352)
T ss_pred HHHH
Confidence 5543
No 294
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=88.10 E-value=25 Score=33.52 Aligned_cols=149 Identities=15% Similarity=0.204 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc--c----CcHHHHHHHHHHHHhCCC---CCCcccHHHHHHHHHhcCC--
Q 009066 154 EDGLKLLRMMIGLGIRPNASSLSSVLLGCSH--L----SSLQLGKQVHQLVFKSPL---CKDTTALTPLISMYCKCGD-- 222 (545)
Q Consensus 154 ~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~--~----~~~~~a~~~~~~~~~~g~---~~~~~~~~~li~~y~~~g~-- 222 (545)
++.+.+++.|.+.|..-+..+|.+.+..... . .....+..+|+.|.+.-. .++-..+.+|+.+ ..++
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 4456688889999988888888775544433 2 245778999999988642 2344455555443 3333
Q ss_pred --HHHHHHHHHhccC-----CChhhHHHHHHHHHHc-C--ChHHHHHHHHHHHHcCCCCCHHHHHHHHH-HHHccCc---
Q 009066 223 --LEDACKLFLEIQR-----KDVVTWNAMISGYAQH-G--KGEKALRLFDKMKDEGMKPDSITFVALLL-ACNHAGL--- 288 (545)
Q Consensus 223 --~~~A~~~f~~~~~-----~~~~~~~~li~~~~~~-g--~~~~A~~~~~~m~~~g~~p~~~t~~~ll~-a~~~~g~--- 288 (545)
.+.++.+|+.+.+ .|..-+.+-+-++... . ...++.++++.+.+.|+++....|..+.- ++...+.
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~~~~~ 236 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDPEEKI 236 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCchHHH
Confidence 3455666666654 2333333333333321 1 24578999999999999988877765543 2222222
Q ss_pred HHHHHHHHHHhHHhcC
Q 009066 289 VDLGIQYFDSMVNDYG 304 (545)
Q Consensus 289 ~~~a~~~~~~~~~~~~ 304 (545)
++.-.++.+.+.+..+
T Consensus 237 ~~~i~ev~~~L~~~k~ 252 (297)
T PF13170_consen 237 VEEIKEVIDELKEQKG 252 (297)
T ss_pred HHHHHHHHHHHhhCcc
Confidence 3344444555544434
No 295
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=87.76 E-value=17 Score=31.15 Aligned_cols=131 Identities=15% Similarity=0.112 Sum_probs=71.6
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhccCC
Q 009066 157 LKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK 236 (545)
Q Consensus 157 ~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~ 236 (545)
++.++.+.+.+++|+...+..++..+.+.|.+..-.++ +..++-+|.......+-.+. +....+.++=-+|.++
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~ql----lq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQL----LQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH----HhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH
Confidence 55667777788888888888888888888876654443 33343344333222221111 2223333333333333
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHH
Q 009066 237 DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFD 297 (545)
Q Consensus 237 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 297 (545)
=...+..++..+...|++-+|+.+.+..... +......++.+-.+.++...=..+++
T Consensus 88 L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ 144 (167)
T PF07035_consen 88 LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFR 144 (167)
T ss_pred hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHH
Confidence 2234566677778888888888887765322 11122334555555555444444433
No 296
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.71 E-value=16 Score=30.89 Aligned_cols=91 Identities=14% Similarity=0.037 Sum_probs=54.2
Q ss_pred HHHHccCcHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHhHcCCHHHHHHHHHhCC-CCCCHhHHHHHHHHHHhcCCHH
Q 009066 281 LACNHAGLVDLGIQYFDSMVNDYGIAAK-PDHYTCMVDLLGRAGKLVEAVDLIKKMP-FKPQPAIFGTLLSACRVHKRLD 358 (545)
Q Consensus 281 ~a~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~li~~~~~~g~~~ 358 (545)
..-...++.+++..++..+.- +.|. +..-..-...+.+.|++.+|..+|+++. ..|....-.+|+..|....+-.
T Consensus 18 ~~al~~~~~~D~e~lL~ALrv---LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~ 94 (160)
T PF09613_consen 18 SVALRLGDPDDAEALLDALRV---LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDP 94 (160)
T ss_pred HHHHccCChHHHHHHHHHHHH---hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCCh
Confidence 334466778888888877653 3444 3333344555678888888888888882 2244444556666555544433
Q ss_pred HHHHHHHHHhcCCCCC
Q 009066 359 LAEFAAMNLFNLNPAN 374 (545)
Q Consensus 359 ~A~~~~~~~~~~~p~~ 374 (545)
.=.....++++.+++.
T Consensus 95 ~Wr~~A~evle~~~d~ 110 (160)
T PF09613_consen 95 SWRRYADEVLESGADP 110 (160)
T ss_pred HHHHHHHHHHhcCCCh
Confidence 3444455566666554
No 297
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=87.68 E-value=22 Score=32.53 Aligned_cols=69 Identities=19% Similarity=0.225 Sum_probs=48.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCH
Q 009066 241 WNAMISGYAQHGKGEKALRLFDKMKDEGM--KPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKP 309 (545)
Q Consensus 241 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~ 309 (545)
|-.-+..-.+.|++++|.+.|+.+...-+ +-...+...++.++-+.++.++|+...++..+.++-.|+.
T Consensus 37 LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~ 107 (254)
T COG4105 37 LYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA 107 (254)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh
Confidence 33344455678899999999998876421 1124556667777888888999988888888877666665
No 298
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=86.66 E-value=1.2 Score=41.82 Aligned_cols=110 Identities=10% Similarity=0.049 Sum_probs=77.3
Q ss_pred HHHHccCcHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHhHcCCHHHHHHHHHhC-CCC-CCHhHHHHHHHHHHhcCCH
Q 009066 281 LACNHAGLVDLGIQYFDSMVNDYGIAA-KPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFK-PQPAIFGTLLSACRVHKRL 357 (545)
Q Consensus 281 ~a~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~li~~~~~~g~~ 357 (545)
+-|.++|.+++|+..|...+. ..| ++.++..-..+|.+..++..|..-.... .+. .-...|..-+.+-...|+.
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia---~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIA---VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhccchhHHHHHhhhhhc---cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhH
Confidence 458899999999999987763 455 8889999999999999998777554443 110 1123444445555567899
Q ss_pred HHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchHHHHH
Q 009066 358 DLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARI 398 (545)
Q Consensus 358 ~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~ 398 (545)
.+|.+-++.+++++|++.. |-..|.......++.-+
T Consensus 182 ~EAKkD~E~vL~LEP~~~E-----LkK~~a~i~Sl~E~~I~ 217 (536)
T KOG4648|consen 182 MEAKKDCETVLALEPKNIE-----LKKSLARINSLRERKIA 217 (536)
T ss_pred HHHHHhHHHHHhhCcccHH-----HHHHHHHhcchHhhhHH
Confidence 9999999999999998653 44455555554444433
No 299
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=86.58 E-value=19 Score=31.22 Aligned_cols=95 Identities=14% Similarity=0.156 Sum_probs=65.9
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHH------
Q 009066 239 VTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSI--TFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPD------ 310 (545)
Q Consensus 239 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~------ 310 (545)
..+..+..-|++.|+.++|++.|.++.+....|... .+..++..+...+++..+.....+...-.....+..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 467788999999999999999999998875555543 456777888888999988888776654211111122
Q ss_pred HHHHHHHHHhHcCCHHHHHHHHHhC
Q 009066 311 HYTCMVDLLGRAGKLVEAVDLIKKM 335 (545)
Q Consensus 311 ~~~~li~~~~~~g~~~~A~~~~~~m 335 (545)
+|..|. +...+++.+|-+.|-+.
T Consensus 117 ~~~gL~--~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 117 VYEGLA--NLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHH--HHHhchHHHHHHHHHcc
Confidence 222222 23467888888888776
No 300
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=86.47 E-value=1.6 Score=25.56 Aligned_cols=28 Identities=21% Similarity=0.363 Sum_probs=18.8
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 009066 239 VTWNAMISGYAQHGKGEKALRLFDKMKD 266 (545)
Q Consensus 239 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 266 (545)
.+|..+...|...|++++|+..|++.++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 3566677777777777777777777665
No 301
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=86.28 E-value=11 Score=30.67 Aligned_cols=62 Identities=16% Similarity=0.083 Sum_probs=36.4
Q ss_pred HHHHHHHHHHhcC---CHHHHHHHHHHHhc-CCCCCCchhHHHHHHHHHHcCCchHHHHHHHHhhh
Q 009066 343 IFGTLLSACRVHK---RLDLAEFAAMNLFN-LNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKE 404 (545)
Q Consensus 343 ~~~~li~~~~~~g---~~~~A~~~~~~~~~-~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 404 (545)
+--.+..++.... +..+++.+++.+.+ -.|.........|+-++.+.|+++.++++.+...+
T Consensus 34 s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 34 SQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred HHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence 3333444444333 44566677777765 44444333455666677777777777777776655
No 302
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=86.02 E-value=3.3 Score=34.90 Aligned_cols=66 Identities=17% Similarity=0.104 Sum_probs=36.6
Q ss_pred HHHHHHHHHH---hHcCCHHHHHHHHHhC-CCCCCHhHHHHH-HHHHHhcCCHHHHHHHHHHHhcCCCCCC
Q 009066 310 DHYTCMVDLL---GRAGKLVEAVDLIKKM-PFKPQPAIFGTL-LSACRVHKRLDLAEFAAMNLFNLNPANA 375 (545)
Q Consensus 310 ~~~~~li~~~---~~~g~~~~A~~~~~~m-~~~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~~~~~~p~~~ 375 (545)
.+.+.|++.+ .+.++.+++..++..+ -.+|.......+ ...+...|++.+|..+++.+.+..|..+
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p 78 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFP 78 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCh
Confidence 3344454443 3456777777777666 233433222221 2235567777777777777766666654
No 303
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.44 E-value=14 Score=37.91 Aligned_cols=26 Identities=23% Similarity=0.211 Sum_probs=12.9
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHhc
Q 009066 208 TALTPLISMYCKCGDLEDACKLFLEI 233 (545)
Q Consensus 208 ~~~~~li~~y~~~g~~~~A~~~f~~~ 233 (545)
.-|..|.++..+.|++..|.+.|...
T Consensus 667 ~Kw~~Lg~~al~~~~l~lA~EC~~~a 692 (794)
T KOG0276|consen 667 VKWRQLGDAALSAGELPLASECFLRA 692 (794)
T ss_pred HHHHHHHHHHhhcccchhHHHHHHhh
Confidence 34445555555555555555555433
No 304
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=85.43 E-value=38 Score=33.01 Aligned_cols=68 Identities=16% Similarity=0.190 Sum_probs=54.6
Q ss_pred CCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC----CCchhHHHHHHHHHHcCCchHHHHHHHHhhhCCC
Q 009066 339 PQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPA----NAAGCYVQLANIYAAMKKWDDVARIRLSMKENNV 407 (545)
Q Consensus 339 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 407 (545)
....+|..++..+++.|+++.|...+.++...++. .+. ....-+......|+.++|...++...+..+
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~-v~~e~akllw~~g~~~~Ai~~L~~~~~~~~ 215 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPR-VFLEYAKLLWAQGEQEEAIQKLRELLKCRL 215 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcc-hHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 34578999999999999999999999999876521 233 666778889999999999999988876333
No 305
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=85.40 E-value=6.4 Score=30.17 Aligned_cols=60 Identities=15% Similarity=0.306 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHH
Q 009066 256 KALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVD 317 (545)
Q Consensus 256 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 317 (545)
+...-+..+....+.|+.....+.|.||.+.+++..|.++|+.+..+.+.. ...|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~--~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNK--KEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCh--HHHHHHHHH
Confidence 555666666667788999999999999999999999999998887754433 336666655
No 306
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.30 E-value=11 Score=38.63 Aligned_cols=44 Identities=20% Similarity=0.174 Sum_probs=20.6
Q ss_pred HcCChHHHHHHHhhCCCCCcccHHHHHHHhcchhhhccCChHHHHHHHHHH
Q 009066 113 ECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMM 163 (545)
Q Consensus 113 ~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~g~~~~A~~~~~~m 163 (545)
+.|+++.|.++..+. .+..-|..|..+. .+.+++..|.+.|.+.
T Consensus 649 ~lgrl~iA~~la~e~--~s~~Kw~~Lg~~a-----l~~~~l~lA~EC~~~a 692 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEA--NSEVKWRQLGDAA-----LSAGELPLASECFLRA 692 (794)
T ss_pred hcCcHHHHHHHHHhh--cchHHHHHHHHHH-----hhcccchhHHHHHHhh
Confidence 445555554443321 2334455555555 5555555555554443
No 307
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=85.18 E-value=7.7 Score=29.43 Aligned_cols=63 Identities=16% Similarity=0.329 Sum_probs=48.0
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHH
Q 009066 253 KGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVD 317 (545)
Q Consensus 253 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 317 (545)
+.-++.+-+..+....+.|+.....+.++||.+.+++..|.++++.+..+.+. +...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHH
Confidence 34466666777777788999999999999999999999999999887654332 4456666654
No 308
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=85.10 E-value=18 Score=36.11 Aligned_cols=136 Identities=12% Similarity=0.044 Sum_probs=72.3
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhC-C-CCCCHhHHHHHHHHHHhcCCHHHHHH
Q 009066 285 HAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-P-FKPQPAIFGTLLSACRVHKRLDLAEF 362 (545)
Q Consensus 285 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~-~~p~~~~~~~li~~~~~~g~~~~A~~ 362 (545)
..|++-.|-+-.....+.+ +.++.+...........|+++.+...+... + +.....+...++......|++++|..
T Consensus 301 ~~gd~~aas~~~~~~lr~~--~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s 378 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQ--QQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALS 378 (831)
T ss_pred hccCHHHHHHHHHHHHHhC--CCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHH
Confidence 3455554443333333322 333333333344455667777777776655 1 22344566677777777777777777
Q ss_pred HHHHHhcCCCCCCchhHHHHHHHHHHcCCchHHHHHHHHhhhCCCccCCceeEEEECCEEEEE
Q 009066 363 AAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEF 425 (545)
Q Consensus 363 ~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~ 425 (545)
..+.|+..+-.++. ....-+-.....|-++++...|++...-+-+ ....|+.+-.....|
T Consensus 379 ~a~~~l~~eie~~e-i~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~--~~~g~v~~~~~~~~~ 438 (831)
T PRK15180 379 TAEMMLSNEIEDEE-VLTVAAGSADALQLFDKSYHYWKRVLLLNPE--TQSGWVNFLSSTQYF 438 (831)
T ss_pred HHHHHhccccCChh-heeeecccHHHHhHHHHHHHHHHHHhccCCh--hcccceeeeccceec
Confidence 77777765544443 2333333344556777777777776554332 223455443333334
No 309
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=84.42 E-value=4 Score=33.81 Aligned_cols=50 Identities=18% Similarity=0.021 Sum_probs=23.0
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchHHHHHHHHhhh
Q 009066 354 HKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKE 404 (545)
Q Consensus 354 ~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 404 (545)
.+++++++.++..+.-+.|+... .-..-+..+...|+|++|.++++...+
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e-~d~~dg~l~i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKE-LDMFDGWLLIARGNYDEAARILRELLS 72 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccc-cchhHHHHHHHcCCHHHHHHHHHhhhc
Confidence 44444444444444444444443 333444444444444444444444443
No 310
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=84.15 E-value=79 Score=35.65 Aligned_cols=266 Identities=11% Similarity=-0.031 Sum_probs=153.6
Q ss_pred HHHHccCCCCChhhHHHHHHHHHcCCCCHHHHHHH-HhcCCCCCeehHHHHHHHHHhCCCH-HHHHHHHhhCCcCCHhHH
Q 009066 27 QELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDF-FQRLPIKDTASWNTMISGFVQKKNM-AKARDLFLAMPEKNSVSW 104 (545)
Q Consensus 27 ~~~f~~~~~~~~~~~~~li~~~~~~~g~~~~A~~~-~~~m~~~d~~~~~~li~~~~~~g~~-~~a~~~~~~~~~~~~~~~ 104 (545)
..+...+..+|...=-.-+..+.+. +..+ +... ...+..+|...-...+.++.+.+.. .....+...+..+|..+-
T Consensus 624 ~~L~~~L~D~d~~VR~~Av~~L~~~-~~~~-~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~~d~~VR 701 (897)
T PRK13800 624 AELAPYLADPDPGVRRTAVAVLTET-TPPG-FGPALVAALGDGAAAVRRAAAEGLRELVEVLPPAPALRDHLGSPDPVVR 701 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhhh-cchh-HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCchHHHHHHhcCCCHHHH
Confidence 3555555677776655666666665 5544 4444 4444455554444555555544321 111222233345677777
Q ss_pred HHHHHHHHHcCChHHHHHHHhhCCCCCcccHHHHHHHhcchhhhccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 009066 105 SAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSH 184 (545)
Q Consensus 105 ~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~ 184 (545)
.+.+..+...+.- ....+...+..+|...-...+.++ .+.+..+. +..... .+|...-.....++..
T Consensus 702 ~~A~~aL~~~~~~-~~~~l~~~L~D~d~~VR~~Av~aL-----~~~~~~~~----l~~~l~---D~~~~VR~~aa~aL~~ 768 (897)
T PRK13800 702 AAALDVLRALRAG-DAALFAAALGDPDHRVRIEAVRAL-----VSVDDVES----VAGAAT---DENREVRIAVAKGLAT 768 (897)
T ss_pred HHHHHHHHhhccC-CHHHHHHHhcCCCHHHHHHHHHHH-----hcccCcHH----HHHHhc---CCCHHHHHHHHHHHHH
Confidence 7778877765422 123455566667766556666666 44443321 222332 4566666666667666
Q ss_pred cCcHHH-HHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHH-HHHHhccCCChhhHHHHHHHHHHcCChHHHHHHHH
Q 009066 185 LSSLQL-GKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC-KLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFD 262 (545)
Q Consensus 185 ~~~~~~-a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~-~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 262 (545)
.+..+. +...+..+.+ .+|..+-.+.+..+.+.|..+.+. .+...+.++|...-...+.++...+. .++...+.
T Consensus 769 ~~~~~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L~ 844 (897)
T PRK13800 769 LGAGGAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPALV 844 (897)
T ss_pred hccccchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHHH
Confidence 665433 3344444443 456778888999999999876553 34455556776677777778877765 46777777
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHH
Q 009066 263 KMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDL 318 (545)
Q Consensus 263 ~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 318 (545)
.+.. .|+...-...+.++........+...+....+ .++..+-..-..+
T Consensus 845 ~~L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~----D~d~~Vr~~A~~a 893 (897)
T PRK13800 845 EALT---DPHLDVRKAAVLALTRWPGDPAARDALTTALT----DSDADVRAYARRA 893 (897)
T ss_pred HHhc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh----CCCHHHHHHHHHH
Confidence 7764 56777777777788776434566667766655 3455444444433
No 311
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=82.85 E-value=67 Score=33.83 Aligned_cols=175 Identities=13% Similarity=0.093 Sum_probs=84.9
Q ss_pred hHHHHHHHhhCCCC-CcccHHHHHHHhcchhhhccCChHHHHHHHHHHHh-------CCCCCCHHHHHHHHHHHhccC--
Q 009066 117 LDKAVELFKVAPVK-SVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIG-------LGIRPNASSLSSVLLGCSHLS-- 186 (545)
Q Consensus 117 ~~~A~~~f~~~~~~-~~~~~~~li~~~~~~g~~~~g~~~~A~~~~~~m~~-------~~~~pd~~t~~~ll~~~~~~~-- 186 (545)
...|.+.++..... ++..-..+...|..-+.....+.+.|+..|+.+.+ .| +.....-+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 44566666655433 33333333333322223566677888888877765 34 2223344444444422
Q ss_pred ---cHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh-cCCHHHHHHHHHhccCC-ChhhHHHHHHHHH----HcCChHHH
Q 009066 187 ---SLQLGKQVHQLVFKSPLCKDTTALTPLISMYCK-CGDLEDACKLFLEIQRK-DVVTWNAMISGYA----QHGKGEKA 257 (545)
Q Consensus 187 ---~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~-~g~~~~A~~~f~~~~~~-~~~~~~~li~~~~----~~g~~~~A 257 (545)
+.+.|..++....+.|. |+....-..+..... ..+...|.++|....+. .+.+.-.+...|. ...+...|
T Consensus 305 ~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A 383 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELA 383 (552)
T ss_pred ccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHH
Confidence 55667777777777763 333332222222222 23466777777766543 2222222222222 12256677
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHH
Q 009066 258 LRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFD 297 (545)
Q Consensus 258 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 297 (545)
..++.+.-+.| .|-..--...+..+.. +..+.+.-.+.
T Consensus 384 ~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~ 421 (552)
T KOG1550|consen 384 FAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYL 421 (552)
T ss_pred HHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHH
Confidence 77777776665 3332222233333333 44444444443
No 312
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=82.72 E-value=2.6 Score=23.44 Aligned_cols=29 Identities=21% Similarity=0.016 Sum_probs=16.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhcCCC
Q 009066 344 FGTLLSACRVHKRLDLAEFAAMNLFNLNP 372 (545)
Q Consensus 344 ~~~li~~~~~~g~~~~A~~~~~~~~~~~p 372 (545)
|..+...+...++++.|...+++.++..|
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 44445555555556666665555555554
No 313
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=82.45 E-value=9.3 Score=25.48 Aligned_cols=51 Identities=16% Similarity=0.208 Sum_probs=36.3
Q ss_pred hHHHHHHHHHHcCCchHHHHHHHHhhhCCCccCCceeEEEECCEEEEEecCCCCCCChHHHHHHHHHHHHHHHHcCc
Q 009066 378 CYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGY 454 (545)
Q Consensus 378 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~m~~~g~ 454 (545)
....|+-++.+.|++++|.+..+.+.+. .|...+....-..+.++|++.|.
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~--------------------------eP~N~Qa~~L~~~i~~~i~kdgl 53 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEI--------------------------EPDNRQAQSLKELIEDKIQKDGL 53 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH--------------------------TTS-HHHHHHHHHHHHHHHHTTT
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhh--------------------------CCCcHHHHHHHHHHHHHHhccCC
Confidence 4567888999999999999999988763 35555555555666777777663
No 314
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=82.27 E-value=1.2 Score=26.54 Aligned_cols=25 Identities=16% Similarity=0.232 Sum_probs=17.5
Q ss_pred CCCCccHHHHHHHHHHhCCCChHHHH
Q 009066 2 NVKTTVNWNSVLAGFAKQRGKLKDAQ 27 (545)
Q Consensus 2 ~~~~~~~~~~li~~~~~~g~~~~~A~ 27 (545)
+|.++.+|+.|...|...|+ +++|+
T Consensus 9 ~P~n~~a~~nla~~~~~~g~-~~~A~ 33 (34)
T PF13431_consen 9 NPNNAEAYNNLANLYLNQGD-YEEAI 33 (34)
T ss_pred CCCCHHHHHHHHHHHHHCcC-HHhhc
Confidence 46667777777777777777 77665
No 315
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=82.25 E-value=9.5 Score=33.52 Aligned_cols=73 Identities=18% Similarity=0.103 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhC---CCCCCcccHHHHHHHHHhcCCHHHHH
Q 009066 154 EDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKS---PLCKDTTALTPLISMYCKCGDLEDAC 227 (545)
Q Consensus 154 ~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~---g~~~~~~~~~~li~~y~~~g~~~~A~ 227 (545)
+.|++.|-++...+.--++ .....+..|-...+.+++++++-.+++. +-.+|+.++.+|+..|.+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~-elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETA-ELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCH-HHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 5677777777666533333 3333333444456777777777766653 22456667777777777777777664
No 316
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=82.18 E-value=20 Score=29.83 Aligned_cols=48 Identities=13% Similarity=0.050 Sum_probs=21.5
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHhHcCCHHHHHHHHHhC
Q 009066 285 HAGLVDLGIQYFDSMVNDYGIAAK-PDHYTCMVDLLGRAGKLVEAVDLIKKM 335 (545)
Q Consensus 285 ~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m 335 (545)
..++.+++..+++.|.- +.|+ ...-..-.-.+...|++++|.++|++.
T Consensus 22 ~~~d~~D~e~lLdALrv---LrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l 70 (153)
T TIGR02561 22 RSADPYDAQAMLDALRV---LRPNLKELDMFDGWLLIARGNYDEAARILREL 70 (153)
T ss_pred hcCCHHHHHHHHHHHHH---hCCCccccchhHHHHHHHcCCHHHHHHHHHhh
Confidence 34555555555555432 2332 122222233344555555555555555
No 317
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=81.71 E-value=3.5 Score=25.29 Aligned_cols=28 Identities=25% Similarity=0.485 Sum_probs=17.8
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 009066 239 VTWNAMISGYAQHGKGEKALRLFDKMKD 266 (545)
Q Consensus 239 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 266 (545)
.+++.+...|...|++++|+.++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3566666777777777777777766543
No 318
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=81.35 E-value=3.6 Score=23.88 Aligned_cols=27 Identities=30% Similarity=0.534 Sum_probs=16.3
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHH
Q 009066 240 TWNAMISGYAQHGKGEKALRLFDKMKD 266 (545)
Q Consensus 240 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 266 (545)
.|..+...|.+.|++++|++.|++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 355556666666666666666666655
No 319
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=81.30 E-value=1.4e+02 Score=36.54 Aligned_cols=309 Identities=11% Similarity=0.046 Sum_probs=167.1
Q ss_pred HHHHHHHhCCCHHHHHHHHhhC----CcCC--HhHHHHHHHHHHHcCChHHHHHHHhh-CCCCCcccHHHHHHHhcchhh
Q 009066 75 TMISGFVQKKNMAKARDLFLAM----PEKN--SVSWSAMISGYIECGQLDKAVELFKV-APVKSVVAWTAMISGYMKFGY 147 (545)
Q Consensus 75 ~li~~~~~~g~~~~a~~~~~~~----~~~~--~~~~~~li~~~~~~g~~~~A~~~f~~-~~~~~~~~~~~li~~~~~~g~ 147 (545)
++..+=.+.+.+.+|...+++- .+.+ ...+-.+...|+.-+++|...-+... ...++. ++ -|--.
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~sl--~~-qil~~----- 1459 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPSL--YQ-QILEH----- 1459 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCccH--HH-HHHHH-----
Confidence 3444555778888888888873 2222 23444555588888888887776663 333322 22 22233
Q ss_pred hccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhCCCCCCcccH-HHHHHHHHhcCCHHHH
Q 009066 148 VENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTAL-TPLISMYCKCGDLEDA 226 (545)
Q Consensus 148 ~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~-~~li~~y~~~g~~~~A 226 (545)
-..|++..|...|+++.+.+ ++...+++-++......+.++...-..+-..... .+....+ +.=+.+-.+.++++..
T Consensus 1460 e~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~ 1537 (2382)
T KOG0890|consen 1460 EASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLL 1537 (2382)
T ss_pred HhhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhh
Confidence 45788999999999998764 3336677777766666666666555333333221 2222222 2234444677777777
Q ss_pred HHHHHhccCCChhhHHHH-H-HHHHHcC--ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHH----
Q 009066 227 CKLFLEIQRKDVVTWNAM-I-SGYAQHG--KGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDS---- 298 (545)
Q Consensus 227 ~~~f~~~~~~~~~~~~~l-i-~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~---- 298 (545)
..... ..+..+|.+. + ....+.. +.-.-.++.+.+++.-+.| +.+|+..|.+..+.++.-+
T Consensus 1538 e~~l~---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~--------lsa~s~~~Sy~~~Y~~~~kLH~l 1606 (2382)
T KOG0890|consen 1538 ESYLS---DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIEN--------LSACSIEGSYVRSYEILMKLHLL 1606 (2382)
T ss_pred hhhhh---cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhh--------HHHhhccchHHHHHHHHHHHHHH
Confidence 76665 5566666665 2 2222221 1111222333333221111 2223332222222211111
Q ss_pred ------hHHhcCCCCCHH------HHHHHH---HHHhHcCCHHHHHH-HHHhCCCCC-----CHhHHHHHHHHHHhcCCH
Q 009066 299 ------MVNDYGIAAKPD------HYTCMV---DLLGRAGKLVEAVD-LIKKMPFKP-----QPAIFGTLLSACRVHKRL 357 (545)
Q Consensus 299 ------~~~~~~~~~~~~------~~~~li---~~~~~~g~~~~A~~-~~~~m~~~p-----~~~~~~~li~~~~~~g~~ 357 (545)
.....+..++.. -|..-+ +-+.+....=-|.+ .+.....+| -..+|-......++.|++
T Consensus 1607 ~el~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~ 1686 (2382)
T KOG0890|consen 1607 LELENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHL 1686 (2382)
T ss_pred HHHHHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccH
Confidence 111112233221 122222 22222111111111 111111122 236899999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchHHHHHHHHhhhCCC
Q 009066 358 DLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNV 407 (545)
Q Consensus 358 ~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 407 (545)
+.|....-++.+..+. . .+...+....+.|+...|+.+++...+...
T Consensus 1687 q~A~nall~A~e~r~~--~-i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1687 QRAQNALLNAKESRLP--E-IVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred HHHHHHHHhhhhcccc--h-HHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 9999998888777643 3 789999999999999999999998886554
No 320
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=81.26 E-value=71 Score=33.05 Aligned_cols=124 Identities=12% Similarity=0.075 Sum_probs=84.0
Q ss_pred CChhhHHHHHHHHHcCCCCHHHHHHHHhcCC--CCCee-hHHHHHHHHHhCCCHHHHHHHHhhCCc---CCHhHHHHHHH
Q 009066 36 PDVVSYNIMLSCILLNSDDVVAAFDFFQRLP--IKDTA-SWNTMISGFVQKKNMAKARDLFLAMPE---KNSVSWSAMIS 109 (545)
Q Consensus 36 ~~~~~~~~li~~~~~~~g~~~~A~~~~~~m~--~~d~~-~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~ 109 (545)
-+-..|+++|..--.. .+++.++.+++.+. -|-.. -|.....-=.+.|..+.+.++|++-+. -+...|...+.
T Consensus 43 ~~f~~wt~li~~~~~~-~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~ 121 (577)
T KOG1258|consen 43 LDFDAWTTLIQENDSI-EDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLA 121 (577)
T ss_pred hcccchHHHHhccCch-hHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 3445688888754444 56677777777776 34333 455566666778999999999998774 34556666555
Q ss_pred HHH-HcCChHHHHHHHhhCCC------CCcccHHHHHHHhcchhhhccCChHHHHHHHHHHHh
Q 009066 110 GYI-ECGQLDKAVELFKVAPV------KSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIG 165 (545)
Q Consensus 110 ~~~-~~g~~~~A~~~f~~~~~------~~~~~~~~li~~~~~~g~~~~g~~~~A~~~~~~m~~ 165 (545)
.+. ..|+.+.-++.|+.... .....|-..|.-- ..++++.....++++.++
T Consensus 122 f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~e-----n~qks~k~v~~iyeRile 179 (577)
T KOG1258|consen 122 FLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFE-----NGQKSWKRVANIYERILE 179 (577)
T ss_pred HHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHH-----hccccHHHHHHHHHHHHh
Confidence 443 35677777777776442 2456677778777 778888888888888875
No 321
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=80.86 E-value=35 Score=29.22 Aligned_cols=133 Identities=10% Similarity=0.073 Sum_probs=58.9
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcC--CHHHHHHHHHhCC
Q 009066 259 RLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAG--KLVEAVDLIKKMP 336 (545)
Q Consensus 259 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~ 336 (545)
++++.+.+.++.|+...+..++..+.+.|....-.++++ +++-+|.....+.+-.+.... -..-|++++.+++
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq-----~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQ-----YHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHh-----hcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence 344444455566666666666666666665554444332 133344333333222221111 1223334444432
Q ss_pred CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchHHHHHHHHhhhC
Q 009066 337 FKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKEN 405 (545)
Q Consensus 337 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 405 (545)
. .+..++..+...|++-+|.++.++....+.- ....++.+-.+.++-.--..+++-..++
T Consensus 90 ~-----~~~~iievLL~~g~vl~ALr~ar~~~~~~~~----~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 90 T-----AYEEIIEVLLSKGQVLEALRYARQYHKVDSV----PARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred h-----hHHHHHHHHHhCCCHHHHHHHHHHcCCcccC----CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 1 1333444555666666666666554332211 2233444444455444444444444443
No 322
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=80.81 E-value=7.3 Score=36.93 Aligned_cols=93 Identities=14% Similarity=0.143 Sum_probs=62.3
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcC
Q 009066 245 ISGYAQHGKGEKALRLFDKMKDEGMKP-DSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAG 323 (545)
Q Consensus 245 i~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 323 (545)
..-|.++|.+++|++.|..... +.| |.+++..-..||.+...+..|..-....+.- -..-...|+.-+.+-...|
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL--d~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL--DKLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh--hHHHHHHHHHHHHHHHHHh
Confidence 4679999999999999998776 466 8899998899999999988887766555421 0111223333333333445
Q ss_pred CHHHHHHHHHhC-CCCCCH
Q 009066 324 KLVEAVDLIKKM-PFKPQP 341 (545)
Q Consensus 324 ~~~~A~~~~~~m-~~~p~~ 341 (545)
.+.+|.+-++.. .++|+.
T Consensus 180 ~~~EAKkD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKN 198 (536)
T ss_pred hHHHHHHhHHHHHhhCccc
Confidence 666666655544 556764
No 323
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=80.58 E-value=2.2 Score=24.59 Aligned_cols=26 Identities=15% Similarity=-0.077 Sum_probs=12.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHhcCCCC
Q 009066 348 LSACRVHKRLDLAEFAAMNLFNLNPA 373 (545)
Q Consensus 348 i~~~~~~g~~~~A~~~~~~~~~~~p~ 373 (545)
..++.+.|++++|...|+++++..|+
T Consensus 7 a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 7 ARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 33444455555555555555554443
No 324
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=80.44 E-value=12 Score=28.52 Aligned_cols=46 Identities=13% Similarity=0.296 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 009066 154 EDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVF 199 (545)
Q Consensus 154 ~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 199 (545)
-++.+-++.+....+.|++....+.|.||.+.+++..|.++++-+.
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3455556666677788999999999999999999999999988776
No 325
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=80.26 E-value=2.9 Score=34.80 Aligned_cols=85 Identities=15% Similarity=0.163 Sum_probs=47.8
Q ss_pred HHHHHhcchhhhccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhCCCCCCcccHHHHHHH
Q 009066 137 AMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISM 216 (545)
Q Consensus 137 ~li~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 216 (545)
.+|..+ .+.+.+.....+++.+...+...+....+.++..|++.+..+....+++. .+..-...++..
T Consensus 12 ~vi~~~-----~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~ 79 (143)
T PF00637_consen 12 EVISAF-----EERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRL 79 (143)
T ss_dssp CCHHHC-----TTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHH
T ss_pred HHHHHH-----HhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHH
Confidence 345555 66667777777777777665455566677777777777665665555541 111222335555
Q ss_pred HHhcCCHHHHHHHHHhc
Q 009066 217 YCKCGDLEDACKLFLEI 233 (545)
Q Consensus 217 y~~~g~~~~A~~~f~~~ 233 (545)
+-+.|.+++|.-++.++
T Consensus 80 c~~~~l~~~a~~Ly~~~ 96 (143)
T PF00637_consen 80 CEKHGLYEEAVYLYSKL 96 (143)
T ss_dssp HHTTTSHHHHHHHHHCC
T ss_pred HHhcchHHHHHHHHHHc
Confidence 55555555555555544
No 326
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=80.19 E-value=43 Score=29.89 Aligned_cols=103 Identities=12% Similarity=0.039 Sum_probs=66.1
Q ss_pred CCHHHHHHHHhcCCCCCeehHHHHHHHHHhCCCHHHHHHHHhhCCcCCHhHHHHHHHHHHHcCChHHHHHHHhhCCCCCc
Q 009066 53 DDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSV 132 (545)
Q Consensus 53 g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~ 132 (545)
.+-++|.-+|++- +-|.++.---....|+..++.+.- .-+.++|-|.--+...|+++.|.+.|+...+-|+
T Consensus 60 ~~eeRA~l~fERG-----vlYDSlGL~~LAR~DftQaLai~P----~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp 130 (297)
T COG4785 60 TDEERAQLLFERG-----VLYDSLGLRALARNDFSQALAIRP----DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP 130 (297)
T ss_pred ChHHHHHHHHHhc-----chhhhhhHHHHHhhhhhhhhhcCC----CcHHHHHHHHHHHHhcccchHHHHHhhhHhccCC
Confidence 3556777777765 334444432233446666665542 2367888888888999999999999998887665
Q ss_pred -ccHHHHHHHhcchhhhccCChHHHHHHHHHHHhCC
Q 009066 133 -VAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLG 167 (545)
Q Consensus 133 -~~~~~li~~~~~~g~~~~g~~~~A~~~~~~m~~~~ 167 (545)
.-|..+=.+..- --.|++.-|.+-|.+.-+.+
T Consensus 131 ~y~Ya~lNRgi~~---YY~gR~~LAq~d~~~fYQ~D 163 (297)
T COG4785 131 TYNYAHLNRGIAL---YYGGRYKLAQDDLLAFYQDD 163 (297)
T ss_pred cchHHHhccceee---eecCchHhhHHHHHHHHhcC
Confidence 233333222200 34688888888777776654
No 327
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=80.05 E-value=3.2 Score=25.51 Aligned_cols=27 Identities=22% Similarity=0.325 Sum_probs=21.4
Q ss_pred hHHHHHHHHHHcCCchHHHHHHHHhhh
Q 009066 378 CYVQLANIYAAMKKWDDVARIRLSMKE 404 (545)
Q Consensus 378 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 404 (545)
++..|+.+|...|++++|..++++..+
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 677888888888888888888887754
No 328
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=79.98 E-value=3.5 Score=22.61 Aligned_cols=21 Identities=24% Similarity=0.377 Sum_probs=11.9
Q ss_pred HHHHHHHHHcCChHHHHHHHh
Q 009066 105 SAMISGYIECGQLDKAVELFK 125 (545)
Q Consensus 105 ~~li~~~~~~g~~~~A~~~f~ 125 (545)
..+...+...|++++|+.+++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHh
Confidence 345555566666666665554
No 329
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=79.34 E-value=12 Score=37.35 Aligned_cols=122 Identities=16% Similarity=0.200 Sum_probs=83.7
Q ss_pred HHcCChHHHHH-HHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHH
Q 009066 249 AQHGKGEKALR-LFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVE 327 (545)
Q Consensus 249 ~~~g~~~~A~~-~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 327 (545)
...|+...|-+ ++.-+....-.|+.+-..+.| ..+.|.++.+.+.+....+ -+.....+..+++....+.|+.++
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~ 375 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWRE 375 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHH
Confidence 34566655544 455555555566766555554 5678899999888876654 445566778888998999999999
Q ss_pred HHHHHHhC-C-CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC
Q 009066 328 AVDLIKKM-P-FKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPAN 374 (545)
Q Consensus 328 A~~~~~~m-~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~ 374 (545)
|...-..| + .-.+..+...-.......|-++++...+++++.++|..
T Consensus 376 a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 376 ALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPET 424 (831)
T ss_pred HHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChh
Confidence 99888877 1 11344444444555667788889999999988877653
No 330
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=79.07 E-value=20 Score=31.56 Aligned_cols=73 Identities=14% Similarity=0.064 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHhHHhc--CCCCCHHHHHHHHHHHhHcCCHHHH
Q 009066 255 EKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDY--GIAAKPDHYTCMVDLLGRAGKLVEA 328 (545)
Q Consensus 255 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A 328 (545)
++|...|-++...+.--+......|...|. ..+.+++++++....+-+ +-.+|++.+.+|+..|.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 345555555554443333333333333332 334455555544443321 1134455555555555555555544
No 331
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=78.96 E-value=4 Score=22.37 Aligned_cols=21 Identities=24% Similarity=0.233 Sum_probs=12.3
Q ss_pred HHHHHHHhHcCCHHHHHHHHH
Q 009066 313 TCMVDLLGRAGKLVEAVDLIK 333 (545)
Q Consensus 313 ~~li~~~~~~g~~~~A~~~~~ 333 (545)
..+...+...|++++|..+++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHh
Confidence 345556666666666665554
No 332
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=78.90 E-value=45 Score=29.27 Aligned_cols=115 Identities=11% Similarity=0.021 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHcCCCCCHHHHH--HHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHH-----HHHHHHhHcCCHHHH
Q 009066 256 KALRLFDKMKDEGMKPDSITFV--ALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYT-----CMVDLLGRAGKLVEA 328 (545)
Q Consensus 256 ~A~~~~~~m~~~g~~p~~~t~~--~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-----~li~~~~~~g~~~~A 328 (545)
+.....+++...+....-.++. .+...+...|++++|...++.... .|..+.+. .|.......|.+++|
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~----~t~De~lk~l~~lRLArvq~q~~k~D~A 145 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALA----QTKDENLKALAALRLARVQLQQKKADAA 145 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHc----cchhHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 5555555665432222222222 233566778888888888876653 23333333 345667788999999
Q ss_pred HHHHHhCCCCCC--HhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC
Q 009066 329 VDLIKKMPFKPQ--PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANA 375 (545)
Q Consensus 329 ~~~~~~m~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~ 375 (545)
+..++... .++ ......-...+...|+.++|...|++.++.++.+.
T Consensus 146 L~~L~t~~-~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 146 LKTLDTIK-EESWAAIVAELRGDILLAKGDKQEARAAYEKALESDASPA 193 (207)
T ss_pred HHHHhccc-cccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChH
Confidence 99888762 121 12223334578888999999999999988875543
No 333
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=78.51 E-value=28 Score=26.72 Aligned_cols=61 Identities=25% Similarity=0.359 Sum_probs=43.0
Q ss_pred HHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 009066 214 ISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFV 277 (545)
Q Consensus 214 i~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 277 (545)
+..+...|++++|..+.+.+.-||...|-++-. .+.|..+++..-+.+|..+| .|...+|.
T Consensus 46 lsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~Fa 106 (115)
T TIGR02508 46 LSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTFV 106 (115)
T ss_pred HHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 344556888999988888888888888887765 35666777777777776665 44444443
No 334
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=77.16 E-value=6.7 Score=33.71 Aligned_cols=44 Identities=11% Similarity=0.196 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchHHHHHHHHhhhCCCc
Q 009066 357 LDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVV 408 (545)
Q Consensus 357 ~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 408 (545)
+++|...|+++...+|++. .|..-+.+.. +|-+++.++.+++..
T Consensus 96 F~kA~~~FqkAv~~~P~ne--~Y~ksLe~~~------kap~lh~e~~~~~~~ 139 (186)
T PF06552_consen 96 FEKATEYFQKAVDEDPNNE--LYRKSLEMAA------KAPELHMEIHKQGLG 139 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-H--HHHHHHHHHH------THHHHHHHHHHSSS-
T ss_pred HHHHHHHHHHHHhcCCCcH--HHHHHHHHHH------hhHHHHHHHHHHHhh
Confidence 5677788888888999987 6777766653 467788777776654
No 335
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=77.13 E-value=3.3 Score=23.83 Aligned_cols=28 Identities=14% Similarity=0.259 Sum_probs=24.7
Q ss_pred hHHHHHHHHHHcCCchHHHHHHHHhhhC
Q 009066 378 CYVQLANIYAAMKKWDDVARIRLSMKEN 405 (545)
Q Consensus 378 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 405 (545)
++..++.+|.+.|++++|.+.++++.+.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 5678899999999999999999998763
No 336
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.81 E-value=7.5 Score=36.44 Aligned_cols=90 Identities=12% Similarity=0.114 Sum_probs=58.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHhhCCC---------CCcccHHHHHHHhcchhhhccCChHHHHHHHHHHHhCCCCCCHHH
Q 009066 104 WSAMISGYIECGQLDKAVELFKVAPV---------KSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASS 174 (545)
Q Consensus 104 ~~~li~~~~~~g~~~~A~~~f~~~~~---------~~~~~~~~li~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~pd~~t 174 (545)
-..++..-....+++++...+-++.. -..++|--++..| ++++++.++..=.+-|+-||.++
T Consensus 67 Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlllky---------~pq~~i~~l~npIqYGiF~dqf~ 137 (418)
T KOG4570|consen 67 VDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLLKY---------DPQKAIYTLVNPIQYGIFPDQFT 137 (418)
T ss_pred hhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHHcc---------ChHHHHHHHhCcchhccccchhh
Confidence 33444444445566666655544331 1223444444443 56788888887788888888888
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHhCC
Q 009066 175 LSSVLLGCSHLSSLQLGKQVHQLVFKSP 202 (545)
Q Consensus 175 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g 202 (545)
+..+|..+.+.+++..|.++.-.|..+.
T Consensus 138 ~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 138 FCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 8888888888888888877777666543
No 337
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=76.68 E-value=5.5 Score=23.15 Aligned_cols=27 Identities=19% Similarity=0.372 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHcCCchHHHHHHHHhhh
Q 009066 378 CYVQLANIYAAMKKWDDVARIRLSMKE 404 (545)
Q Consensus 378 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 404 (545)
+|..++.+|...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 688999999999999999999998754
No 338
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=75.88 E-value=0.81 Score=38.19 Aligned_cols=53 Identities=11% Similarity=0.076 Sum_probs=25.6
Q ss_pred HHHHhccCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHH
Q 009066 179 LLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFL 231 (545)
Q Consensus 179 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~ 231 (545)
+..+.+.+.++...++++.+.+.+...+....+.++..|++.++.++..++++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 33444445555555555555544434445555555555555544444444444
No 339
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.55 E-value=1.2e+02 Score=32.57 Aligned_cols=166 Identities=17% Similarity=0.212 Sum_probs=98.2
Q ss_pred HHHcCCCCHHHHHHHHhcCC--CC---CeehHHHHHHHHHhCCCHHHHHHHHhhCCcCCHhHHHHHHHHHHHcCChHHHH
Q 009066 47 CILLNSDDVVAAFDFFQRLP--IK---DTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAV 121 (545)
Q Consensus 47 ~~~~~~g~~~~A~~~~~~m~--~~---d~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 121 (545)
-+.+. +.+++|+..-+... .+ -...+...|..+.-.|++++|-...-.|...+..-|.-.+..++.+++...-.
T Consensus 365 Wll~~-k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia 443 (846)
T KOG2066|consen 365 WLLEK-KKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIA 443 (846)
T ss_pred HHHHh-hHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhh
Confidence 34555 78888888877665 22 22457778888888888888888888888888888888888887777765433
Q ss_pred HHHhhCCC-CCcccHHHHHHHhcchhhhccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHh
Q 009066 122 ELFKVAPV-KSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK 200 (545)
Q Consensus 122 ~~f~~~~~-~~~~~~~~li~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 200 (545)
.+.=.-+. -+...|-.++..+ +. .-..-|.+.++. -+++...-..++++- ..+..+
T Consensus 444 ~~lPt~~~rL~p~vYemvLve~-----L~-----~~~~~F~e~i~~-Wp~~Lys~l~iisa~------------~~q~~q 500 (846)
T KOG2066|consen 444 PYLPTGPPRLKPLVYEMVLVEF-----LA-----SDVKGFLELIKE-WPGHLYSVLTIISAT------------EPQIKQ 500 (846)
T ss_pred ccCCCCCcccCchHHHHHHHHH-----HH-----HHHHHHHHHHHh-CChhhhhhhHHHhhc------------chHHHh
Confidence 33222222 2445677777666 43 112333333332 122222222222211 111111
Q ss_pred CCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhccCCCh
Q 009066 201 SPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDV 238 (545)
Q Consensus 201 ~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~ 238 (545)
. ..+..+...|+..|...+++++|...+-...++++
T Consensus 501 ~--Se~~~L~e~La~LYl~d~~Y~~Al~~ylklk~~~v 536 (846)
T KOG2066|consen 501 N--SESTALLEVLAHLYLYDNKYEKALPIYLKLQDKDV 536 (846)
T ss_pred h--ccchhHHHHHHHHHHHccChHHHHHHHHhccChHH
Confidence 1 11222334489999999999999999888876544
No 340
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=75.45 E-value=3.6 Score=27.41 Aligned_cols=31 Identities=16% Similarity=0.091 Sum_probs=25.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhcCCCCCCc
Q 009066 346 TLLSACRVHKRLDLAEFAAMNLFNLNPANAA 376 (545)
Q Consensus 346 ~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 376 (545)
.+.-++.+.|+++.|.+..+.+++.+|++..
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Q 36 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQ 36 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHH
Confidence 4566889999999999999999999999864
No 341
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=75.29 E-value=1.2e+02 Score=32.42 Aligned_cols=69 Identities=14% Similarity=0.128 Sum_probs=38.4
Q ss_pred HHHHHHHHHcCChHHHHHHHhhCC---CCCcccHHHHHHHhcch--hhhccCChHHHHHHHHHHHhCCCCCCHH
Q 009066 105 SAMISGYIECGQLDKAVELFKVAP---VKSVVAWTAMISGYMKF--GYVENSWAEDGLKLLRMMIGLGIRPNAS 173 (545)
Q Consensus 105 ~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~--g~~~~g~~~~A~~~~~~m~~~~~~pd~~ 173 (545)
-++|-.+.+||++++|.++..+.. .+....+-..+..|... +......-++...-|++..+.....|++
T Consensus 115 Wa~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~Dpy 188 (613)
T PF04097_consen 115 WALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPY 188 (613)
T ss_dssp HHHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChH
Confidence 357788899999999999993332 33445667777888332 1112222345556677766554333544
No 342
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.17 E-value=1.3e+02 Score=32.69 Aligned_cols=75 Identities=7% Similarity=0.079 Sum_probs=43.9
Q ss_pred HHHHHhHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhc-CCCCCCchhHHHHHHHHHHcCC
Q 009066 315 MVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFN-LNPANAAGCYVQLANIYAAMKK 391 (545)
Q Consensus 315 li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~p~~~~~~~~~l~~~~~~~g~ 391 (545)
++..+....+.+++..+.+..+- -++..|..++..++..+..+.-.+...++++ +...... .-..+++++++.+.
T Consensus 711 l~~~~~q~~d~E~~it~~~~~g~-~~p~l~~~~L~yF~~~~~i~~~~~~v~~vl~~I~~~~~i-ppl~VL~~Lakn~~ 786 (933)
T KOG2114|consen 711 LMLYFQQISDPETVITLCERLGK-EDPSLWLHALKYFVSEESIEDCYEIVYKVLEAIEMQERI-PPLHVLQILAKNGT 786 (933)
T ss_pred HHHHHHHhhChHHHHHHHHHhCc-cChHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHhcccC-CHHHHHHHHhcCCc
Confidence 45556666777777777777752 3677788888888887766665555554433 1111111 23345555555543
No 343
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=74.91 E-value=1e+02 Score=31.41 Aligned_cols=55 Identities=9% Similarity=0.250 Sum_probs=24.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhccC--CChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 009066 211 TPLISMYCKCGDLEDACKLFLEIQR--KDVVTWNAMISGYAQHGKGEKALRLFDKMKD 266 (545)
Q Consensus 211 ~~li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 266 (545)
-++++.++..-...-.+.+-.+|.. .+-..+..++..|.++ ..++-..+++++.+
T Consensus 70 ~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve 126 (711)
T COG1747 70 VTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVE 126 (711)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHH
Confidence 3344444444444444444444432 2334444445555444 33444444444444
No 344
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=74.12 E-value=12 Score=34.75 Aligned_cols=60 Identities=13% Similarity=0.021 Sum_probs=51.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchHHHHHHHHhhh
Q 009066 344 FGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKE 404 (545)
Q Consensus 344 ~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 404 (545)
++.....|...|.+.+|..+.++.+.++|-+.. .+..|+..+...|+--.+.+-++++.+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~-~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQ-DNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhH-HHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 444556788999999999999999999999887 899999999999998888888777753
No 345
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=73.90 E-value=18 Score=27.87 Aligned_cols=46 Identities=13% Similarity=0.302 Sum_probs=32.2
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHh
Q 009066 155 DGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK 200 (545)
Q Consensus 155 ~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 200 (545)
+..+-++.+....+.|++....+.|.||.+.+++..|.++++-+..
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4444555666667888888888888999888888888888887754
No 346
>PRK10941 hypothetical protein; Provisional
Probab=72.86 E-value=28 Score=32.53 Aligned_cols=62 Identities=21% Similarity=0.162 Sum_probs=52.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchHHHHHHHHhhhC
Q 009066 343 IFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKEN 405 (545)
Q Consensus 343 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 405 (545)
..+.|-.+|.+.++++.|..+.+.++.+.|+++. -+.--+-+|.+.|.+..|..=++...+.
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~-e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPY-EIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 4566778889999999999999999999999876 6677788899999999999888777654
No 347
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=69.58 E-value=1.4e+02 Score=30.58 Aligned_cols=158 Identities=17% Similarity=0.170 Sum_probs=67.2
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHH
Q 009066 171 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR---KDVVTWNAMISG 247 (545)
Q Consensus 171 d~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~ 247 (545)
|.....+++..++..-...-++.+-.+|+..| .+-..+..++..|... .-+.-..+++++.+ .|++.-..+..-
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~ 141 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADK 141 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHH
Confidence 44444455555555555555555555555443 2333444455555544 22333334443322 233333333333
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCC---CH---HHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhH
Q 009066 248 YAQHGKGEKALRLFDKMKDEGMKP---DS---ITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGR 321 (545)
Q Consensus 248 ~~~~g~~~~A~~~~~~m~~~g~~p---~~---~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 321 (545)
|-+ ++.+++..+|.+.... +-| +. ..|.-+... -..+.+.-..+...+.+..|...-...+.-+-.-|..
T Consensus 142 yEk-ik~sk~a~~f~Ka~yr-fI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 142 YEK-IKKSKAAEFFGKALYR-FIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHH-hchhhHHHHHHHHHHH-hcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 322 4455555555554432 111 00 012222111 0223444444444444443444444444445555555
Q ss_pred cCCHHHHHHHHHhC
Q 009066 322 AGKLVEAVDLIKKM 335 (545)
Q Consensus 322 ~g~~~~A~~~~~~m 335 (545)
..++++|++++..+
T Consensus 218 ~eN~~eai~Ilk~i 231 (711)
T COG1747 218 NENWTEAIRILKHI 231 (711)
T ss_pred ccCHHHHHHHHHHH
Confidence 66666666665544
No 348
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=68.29 E-value=2.1e+02 Score=32.31 Aligned_cols=42 Identities=7% Similarity=-0.037 Sum_probs=22.8
Q ss_pred HHHhhCCcCCHhHHHHHHHHHHHcCChHHHHHHHhhCCCCCc
Q 009066 91 DLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSV 132 (545)
Q Consensus 91 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~ 132 (545)
.+...+.++|+.+-...+..+.+.+..+-...+...+..+|.
T Consensus 625 ~L~~~L~D~d~~VR~~Av~~L~~~~~~~~~~~L~~aL~D~d~ 666 (897)
T PRK13800 625 ELAPYLADPDPGVRRTAVAVLTETTPPGFGPALVAALGDGAA 666 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhhhcchhHHHHHHHHHcCCCH
Confidence 444444466777777777777766654433333344444443
No 349
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=67.86 E-value=19 Score=32.03 Aligned_cols=63 Identities=17% Similarity=0.087 Sum_probs=51.0
Q ss_pred HHHHHHHhHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC
Q 009066 313 TCMVDLLGRAGKLVEAVDLIKKM-PFKP-QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANA 375 (545)
Q Consensus 313 ~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~ 375 (545)
+.-+..+.+.+.+++|+...++- ..+| |...-..++..++..|++++|..-++-.-++.|+..
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 44566778889999999877654 4456 556777889999999999999999999999999875
No 350
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=67.83 E-value=8.9 Score=24.39 Aligned_cols=27 Identities=19% Similarity=0.294 Sum_probs=22.9
Q ss_pred HHHHHHHHHcCCchHHHHHHHHhhhCC
Q 009066 380 VQLANIYAAMKKWDDVARIRLSMKENN 406 (545)
Q Consensus 380 ~~l~~~~~~~g~~~~a~~~~~~m~~~~ 406 (545)
..|+.+|...|+.+.|++++++....|
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 468899999999999999999887643
No 351
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=67.50 E-value=95 Score=30.86 Aligned_cols=54 Identities=7% Similarity=0.106 Sum_probs=36.0
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHH--ccCcHHHHHHHHHHhHH
Q 009066 247 GYAQHGKGEKALRLFDKMKDEGMKPDSI--TFVALLLACN--HAGLVDLGIQYFDSMVN 301 (545)
Q Consensus 247 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~--~~g~~~~a~~~~~~~~~ 301 (545)
.+.+.+++..|.++|+++... ++++.. .+..+..+|. ..-++++|.+.++....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 334678888999999888876 555544 3334444443 45677888888877665
No 352
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=66.88 E-value=4.3 Score=38.47 Aligned_cols=116 Identities=16% Similarity=0.089 Sum_probs=61.1
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhC-CCCCCH-hHHHHHHHHHHhcCCHHHHHH
Q 009066 285 HAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKPQP-AIFGTLLSACRVHKRLDLAEF 362 (545)
Q Consensus 285 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~~~~~li~~~~~~g~~~~A~~ 362 (545)
..|.+++|++.|...++ .-++....|.--...+.+.++...|++=+... .+.||. ..|-.=..+-+..|++++|..
T Consensus 126 n~G~~~~ai~~~t~ai~--lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIE--LNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred cCcchhhhhcccccccc--cCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHH
Confidence 45667777777666554 22444455555555566666666665544433 344443 222222334445566666666
Q ss_pred HHHHHhcCCCCCCchhHHHHHHHHHHcCCchHHHHHHHHhhh
Q 009066 363 AAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKE 404 (545)
Q Consensus 363 ~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 404 (545)
.++...+++-+.. +-..|-...-+++..++-.+.+++.++
T Consensus 204 dl~~a~kld~dE~--~~a~lKeV~p~a~ki~e~~~k~er~~~ 243 (377)
T KOG1308|consen 204 DLALACKLDYDEA--NSATLKEVFPNAGKIEEHRRKYERARE 243 (377)
T ss_pred HHHHHHhccccHH--HHHHHHHhccchhhhhhchhHHHHHHH
Confidence 6666666555443 334445555555555555555554443
No 353
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=66.32 E-value=1.2e+02 Score=28.61 Aligned_cols=20 Identities=10% Similarity=-0.002 Sum_probs=15.6
Q ss_pred HHHHHHcCCchHHHHHHHHh
Q 009066 383 ANIYAAMKKWDDVARIRLSM 402 (545)
Q Consensus 383 ~~~~~~~g~~~~a~~~~~~m 402 (545)
+..+.+.++|++|.+.++.-
T Consensus 253 ~~~~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 253 GKKHYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHHHHhhcCHHHHHHHHHHH
Confidence 34567889999999998753
No 354
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=66.01 E-value=42 Score=26.99 Aligned_cols=71 Identities=14% Similarity=0.277 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhC
Q 009066 256 KALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335 (545)
Q Consensus 256 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 335 (545)
+..+-+..+....+.|+....-..+.||.+.+++..|.++|+-+..+ ..+....|..+++ +-.-+.+++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K--~g~~k~~Y~y~v~---------elkpvl~EL 135 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK--CGAQKQVYPYYVK---------ELKPVLNEL 135 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh--cccHHHHHHHHHH---------HHHHHHHHh
Confidence 45555666667788999999999999999999999999999888664 3444445666554 334455666
Q ss_pred CC
Q 009066 336 PF 337 (545)
Q Consensus 336 ~~ 337 (545)
++
T Consensus 136 GI 137 (149)
T KOG4077|consen 136 GI 137 (149)
T ss_pred CC
Confidence 43
No 355
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=65.80 E-value=33 Score=30.67 Aligned_cols=129 Identities=13% Similarity=0.048 Sum_probs=75.5
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHhHHh-cCCCCCHHHHHHHHHH
Q 009066 240 TWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVND-YGIAAKPDHYTCMVDL 318 (545)
Q Consensus 240 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~~li~~ 318 (545)
+.+..++.+.+.+...+|+...++-.+.. +.|..+-..++..++-.|++++|..-++-..+- -...+....|..+|.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 45666788888999999999988877753 234455566778889999999998777654321 0223334556555553
Q ss_pred HhHcCCHHHHH-HHHHhC--C-CCC-CHhHHHHHH-HHHHhc--CCHHHHHHHHHHHhcCCCCCCc
Q 009066 319 LGRAGKLVEAV-DLIKKM--P-FKP-QPAIFGTLL-SACRVH--KRLDLAEFAAMNLFNLNPANAA 376 (545)
Q Consensus 319 ~~~~g~~~~A~-~~~~~m--~-~~p-~~~~~~~li-~~~~~~--g~~~~A~~~~~~~~~~~p~~~~ 376 (545)
+.+. ++|..- | +-- ....|-..+ .+..-+ |..+.+..+-++.++..|....
T Consensus 82 -------ea~R~evfag~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreqal~aa~~~iG 140 (273)
T COG4455 82 -------EAARNEVFAGGAVPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQALKAAPVPIG 140 (273)
T ss_pred -------HHHHHHHhccCCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCCCCc
Confidence 2222 244332 1 111 234454443 443333 3444455666677777776554
No 356
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=65.63 E-value=19 Score=32.59 Aligned_cols=65 Identities=14% Similarity=0.129 Sum_probs=35.9
Q ss_pred CCCCHh-HHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchHHHHHHHHh
Q 009066 337 FKPQPA-IFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSM 402 (545)
Q Consensus 337 ~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 402 (545)
+.|+.. -|+.=+-.+.+..+++.+..--.+.+++.|+..- ....|.........+++|...+.+.
T Consensus 39 ~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk-~h~flg~~~l~s~~~~eaI~~Lqra 104 (284)
T KOG4642|consen 39 INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVK-AHYFLGQWLLQSKGYDEAIKVLQRA 104 (284)
T ss_pred cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHH-HHHHHHHHHHhhccccHHHHHHHHH
Confidence 345442 2333344445555566666656666666666555 5556666666666666666665555
No 357
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=65.52 E-value=29 Score=35.67 Aligned_cols=95 Identities=21% Similarity=0.213 Sum_probs=50.7
Q ss_pred CcHHHHHHHHHHhHHhcCCCCC--HHHHHHHHHHHhHcCCHHHHHHHHHhC-CC-CCCHhHHHHHHHHHHhcCCHHHHHH
Q 009066 287 GLVDLGIQYFDSMVNDYGIAAK--PDHYTCMVDLLGRAGKLVEAVDLIKKM-PF-KPQPAIFGTLLSACRVHKRLDLAEF 362 (545)
Q Consensus 287 g~~~~a~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~li~~~~~~g~~~~A~~ 362 (545)
|+...|...+..... ..|. ......|...+.+.|...+|-.++.+. .+ ...+.++.++..++....+++.|++
T Consensus 621 gn~~~a~~cl~~a~~---~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~ 697 (886)
T KOG4507|consen 621 GNSTFAIACLQRALN---LAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALE 697 (886)
T ss_pred CCcHHHHHHHHHHhc---cChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHH
Confidence 455555555544432 2222 122334455555556666666655443 11 1233455666666666777777777
Q ss_pred HHHHHhcCCCCCCchhHHHHHHH
Q 009066 363 AAMNLFNLNPANAAGCYVQLANI 385 (545)
Q Consensus 363 ~~~~~~~~~p~~~~~~~~~l~~~ 385 (545)
.|+++.+++|++.. .-..|..+
T Consensus 698 ~~~~a~~~~~~~~~-~~~~l~~i 719 (886)
T KOG4507|consen 698 AFRQALKLTTKCPE-CENSLKLI 719 (886)
T ss_pred HHHHHHhcCCCChh-hHHHHHHH
Confidence 77777777777665 44444443
No 358
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=65.37 E-value=1.6e+02 Score=29.94 Aligned_cols=239 Identities=12% Similarity=0.053 Sum_probs=108.8
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCc------HHHHHHHHHHHHhCC-CCC-CcccHHHHHHHHHhcCCHHH-
Q 009066 155 DGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSS------LQLGKQVHQLVFKSP-LCK-DTTALTPLISMYCKCGDLED- 225 (545)
Q Consensus 155 ~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~~------~~~a~~~~~~~~~~g-~~~-~~~~~~~li~~y~~~g~~~~- 225 (545)
....+|++..+. -|+...+...|..|-..-. +.....+++...+.+ ..+ ....|..+.-++.+.....+
T Consensus 300 ~~~~v~ee~v~~--l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~ 377 (568)
T KOG2396|consen 300 RCCAVYEEAVKT--LPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREV 377 (568)
T ss_pred HHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHH
Confidence 344566666543 4566667777777654333 333444555544432 222 34455666666665554333
Q ss_pred HHHHHHhccCCChhhHHHHHHHHHHcC-ChH-HHHHHHHHHHHcCCCCCHHHHHHHH-HHHHccCcHHHHHHHHHHhHHh
Q 009066 226 ACKLFLEIQRKDVVTWNAMISGYAQHG-KGE-KALRLFDKMKDEGMKPDSITFVALL-LACNHAGLVDLGIQYFDSMVND 302 (545)
Q Consensus 226 A~~~f~~~~~~~~~~~~~li~~~~~~g-~~~-~A~~~~~~m~~~g~~p~~~t~~~ll-~a~~~~g~~~~a~~~~~~~~~~ 302 (545)
|..+-.+....|...|-.-++...... ++. .-.++|......-..+-...++... ....+....+.-...+..+
T Consensus 378 a~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~~~dsl~~~~~~~Ii~a~~s~--- 454 (568)
T KOG2396|consen 378 AVKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASASEGDSLQEDTLDLIISALLSV--- 454 (568)
T ss_pred HHHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHhhccchhHHHHHHHHHHHHHh---
Confidence 444444555556666665555544321 111 1122222232221222222333222 0001111111111112111
Q ss_pred cCCCCCH-HHHHHHHHHHhHcCCHHHHHHHHHhCCC--CCCHhHHHHHHHHHH--hcCCHHHHHHHHHHHhcCCCCCCch
Q 009066 303 YGIAAKP-DHYTCMVDLLGRAGKLVEAVDLIKKMPF--KPQPAIFGTLLSACR--VHKRLDLAEFAAMNLFNLNPANAAG 377 (545)
Q Consensus 303 ~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~--~p~~~~~~~li~~~~--~~g~~~~A~~~~~~~~~~~p~~~~~ 377 (545)
+ .|+. ..-+.+++-+.+.|-..+|..++..+.. .|+...+..+|..-. ..-+..-+..+|+.+..--..++.
T Consensus 455 -~-~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~- 531 (568)
T KOG2396|consen 455 -I-GADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSD- 531 (568)
T ss_pred -c-CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChH-
Confidence 2 2332 3335666777777777777777776611 245566666664321 122355556666665442223333
Q ss_pred hHHHHHHHHHHcCCchHHHHHHHH
Q 009066 378 CYVQLANIYAAMKKWDDVARIRLS 401 (545)
Q Consensus 378 ~~~~l~~~~~~~g~~~~a~~~~~~ 401 (545)
.|.....--...|..+.+-.++.+
T Consensus 532 lw~~y~~~e~~~g~~en~~~~~~r 555 (568)
T KOG2396|consen 532 LWMDYMKEELPLGRPENCGQIYWR 555 (568)
T ss_pred HHHHHHHhhccCCCcccccHHHHH
Confidence 455444444455555555544443
No 359
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=65.30 E-value=97 Score=27.27 Aligned_cols=21 Identities=5% Similarity=-0.091 Sum_probs=10.6
Q ss_pred HHHHccCcHHHHHHHHHHhHH
Q 009066 281 LACNHAGLVDLGIQYFDSMVN 301 (545)
Q Consensus 281 ~a~~~~g~~~~a~~~~~~~~~ 301 (545)
.++...|+-++|+.-|.....
T Consensus 167 Dill~kg~k~~Ar~ay~kAl~ 187 (207)
T COG2976 167 DILLAKGDKQEARAAYEKALE 187 (207)
T ss_pred hHHHHcCchHHHHHHHHHHHH
Confidence 344455555555555555444
No 360
>PRK14700 recombination factor protein RarA; Provisional
Probab=63.88 E-value=1.4e+02 Score=28.43 Aligned_cols=72 Identities=13% Similarity=0.170 Sum_probs=51.7
Q ss_pred CcccHHHHHHHhcchhhhccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC-----cHHHHHHHHHHHHhCCCC
Q 009066 131 SVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLS-----SLQLGKQVHQLVFKSPLC 204 (545)
Q Consensus 131 ~~~~~~~li~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~-----~~~~a~~~~~~~~~~g~~ 204 (545)
+...+-.+|+++.|. .+..+++.|+-.+.+|++.|-.|....-..++.++...| .+..|...++.....|++
T Consensus 122 ~gd~HYd~iSAf~KS--iRGSDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIGlAdP~al~~a~aa~~A~~~iG~P 198 (300)
T PRK14700 122 EGKEFYEQLSAFHKS--VRGTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIGNADPQALRVAMDAWNAYEKLGMP 198 (300)
T ss_pred CcchhHHHHHHHHHH--hhcCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCh
Confidence 444455567777665 778899999999999999998888877777777776665 344555555555555643
No 361
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=63.22 E-value=1e+02 Score=28.79 Aligned_cols=87 Identities=14% Similarity=0.154 Sum_probs=49.8
Q ss_pred HHHHHHcCChHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhH-
Q 009066 245 ISGYAQHGKGEKALRLFDKMKDE--GMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGR- 321 (545)
Q Consensus 245 i~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~- 321 (545)
|.+++..|++.+++...-+--+. .++|...-..+ -.|++.+.+..+.++-..-....+ .-+..-|..++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCI--LLysKv~Ep~amlev~~~WL~~p~-Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCI--LLYSKVQEPAAMLEVASAWLQDPS-NQSLPEYGTVAELYLLH 166 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHH--HHHHHhcCHHHHHHHHHHHHhCcc-cCCchhhHHHHHHHHHH
Confidence 66777777777777655444331 23443333333 346777777777766665554311 1222336666666543
Q ss_pred ----cCCHHHHHHHHHh
Q 009066 322 ----AGKLVEAVDLIKK 334 (545)
Q Consensus 322 ----~g~~~~A~~~~~~ 334 (545)
.|.+++|+++...
T Consensus 167 VLlPLG~~~eAeelv~g 183 (309)
T PF07163_consen 167 VLLPLGHFSEAEELVVG 183 (309)
T ss_pred HHhccccHHHHHHHHhc
Confidence 5778888777743
No 362
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=63.09 E-value=25 Score=25.60 Aligned_cols=47 Identities=11% Similarity=0.075 Sum_probs=24.3
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHhHcCCHHHHHHH
Q 009066 285 HAGLVDLGIQYFDSMVNDYGIAAK-PDHYTCMVDLLGRAGKLVEAVDL 331 (545)
Q Consensus 285 ~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~ 331 (545)
+....++|+..|....++..-.|+ -.+..+|+.+|+..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666665554222222 12344556666666666665543
No 363
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=62.81 E-value=28 Score=25.95 Aligned_cols=64 Identities=11% Similarity=0.218 Sum_probs=41.0
Q ss_pred HHHHHccCCCCChhhHHHH--HHHHHcCCCCHHHHHHHHhcCCCCCeehHHHHHHHHHhCCCHHHHH
Q 009066 26 AQELFDKIPQPDVVSYNIM--LSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKAR 90 (545)
Q Consensus 26 A~~~f~~~~~~~~~~~~~l--i~~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~a~ 90 (545)
+.++++...+.+..|-.-. |.+-..++|+.+.|++++..++ +.+..|..+++++...|.-.-|.
T Consensus 21 ~~~v~d~ll~~~ilT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQGLLTEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 4456666666666654422 2222224478888888888887 77777888888887777655443
No 364
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=61.73 E-value=1e+02 Score=27.23 Aligned_cols=62 Identities=13% Similarity=0.092 Sum_probs=34.5
Q ss_pred HHHHHhHcCCHHHHHHHHHhC-CCCCCH-hHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCc
Q 009066 315 MVDLLGRAGKLVEAVDLIKKM-PFKPQP-AIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAA 376 (545)
Q Consensus 315 li~~~~~~g~~~~A~~~~~~m-~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 376 (545)
-..++.+.+..+.|++--.+. .+.|.- .....-..+|-+...++.|+.-|+++++.+|....
T Consensus 140 raaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~e 203 (271)
T KOG4234|consen 140 RAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRRE 203 (271)
T ss_pred hHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHH
Confidence 334445555555555443333 233321 11112234566777888888888888888887653
No 365
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=61.33 E-value=2.2e+02 Score=30.03 Aligned_cols=170 Identities=16% Similarity=0.158 Sum_probs=98.2
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHH----H-HhccCcHHHHHHHHHHHHh-------CCCCCCcccHHHHHHHHHhc
Q 009066 153 AEDGLKLLRMMIGLGIRPNASSLSSVLL----G-CSHLSSLQLGKQVHQLVFK-------SPLCKDTTALTPLISMYCKC 220 (545)
Q Consensus 153 ~~~A~~~~~~m~~~~~~pd~~t~~~ll~----~-~~~~~~~~~a~~~~~~~~~-------~g~~~~~~~~~~li~~y~~~ 220 (545)
...|.++++...+.| +...-..+.. . .....+++.|..+++.+.+ .| .......+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 567888998888776 2222222222 2 4466799999999999877 55 333556677778774
Q ss_pred C-----CHHHHHHHHHhccCC-ChhhHHHHHHHHHH---cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--ccCcH
Q 009066 221 G-----DLEDACKLFLEIQRK-DVVTWNAMISGYAQ---HGKGEKALRLFDKMKDEGMKPDSITFVALLLACN--HAGLV 289 (545)
Q Consensus 221 g-----~~~~A~~~f~~~~~~-~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~--~~g~~ 289 (545)
. +.+.|..+|....+. ++..--.+...|.. ..+...|.++|...-+.|.. +..-...++-... -..+.
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~~ 380 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELGNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERNL 380 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcCCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCCH
Confidence 3 567788888876542 22222223333322 23567999999998887733 3333323322222 33477
Q ss_pred HHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHH
Q 009066 290 DLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLI 332 (545)
Q Consensus 290 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 332 (545)
+.|..++.+..++ | .|....-...+..+.. ++.+.+.-.+
T Consensus 381 ~~A~~~~k~aA~~-g-~~~A~~~~~~~~~~g~-~~~~~~~~~~ 420 (552)
T KOG1550|consen 381 ELAFAYYKKAAEK-G-NPSAAYLLGAFYEYGV-GRYDTALALY 420 (552)
T ss_pred HHHHHHHHHHHHc-c-ChhhHHHHHHHHHHcc-ccccHHHHHH
Confidence 8888888887765 4 3332222223333333 5555554443
No 366
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=61.32 E-value=1.1e+02 Score=31.51 Aligned_cols=56 Identities=18% Similarity=0.304 Sum_probs=33.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhccCC--Ch---hhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 009066 211 TPLISMYCKCGDLEDACKLFLEIQRK--DV---VTWNAMISGYAQHGKGEKALRLFDKMKD 266 (545)
Q Consensus 211 ~~li~~y~~~g~~~~A~~~f~~~~~~--~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~ 266 (545)
..|+.-|.+++++++|..++..|.=. .. .+.+.+.+.+.+..--.+....++.++.
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~alg 472 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALG 472 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 35778899999999999999888621 11 2333344444444444444445555443
No 367
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=60.89 E-value=23 Score=22.56 Aligned_cols=22 Identities=23% Similarity=0.377 Sum_probs=10.8
Q ss_pred HHHHHHcCChHHHHHHHHHHHH
Q 009066 245 ISGYAQHGKGEKALRLFDKMKD 266 (545)
Q Consensus 245 i~~~~~~g~~~~A~~~~~~m~~ 266 (545)
..+|...|+.+.|.+++++...
T Consensus 6 A~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 6 ARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHcCChHHHHHHHHHHHH
Confidence 3444555555555555555443
No 368
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=60.67 E-value=1.5e+02 Score=27.93 Aligned_cols=46 Identities=20% Similarity=0.070 Sum_probs=20.1
Q ss_pred HHHhHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHH
Q 009066 317 DLLGRAGKLVEAVDLIKKM-PFKP-QPAIFGTLLSACRVHKRLDLAEF 362 (545)
Q Consensus 317 ~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~A~~ 362 (545)
..|..+|.+.+|.++.+.. ...| +...|-.|+..++..||--.|.+
T Consensus 287 ~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~k 334 (361)
T COG3947 287 RAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIK 334 (361)
T ss_pred HHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhh
Confidence 3444445555555444443 2222 33344444444555554333333
No 369
>PRK12798 chemotaxis protein; Reviewed
Probab=60.11 E-value=1.9e+02 Score=28.85 Aligned_cols=206 Identities=15% Similarity=0.213 Sum_probs=130.4
Q ss_pred cCCHHHHHHHHHhccC----CChhhHHHHHHHHHH-cCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHccCcHH
Q 009066 220 CGDLEDACKLFLEIQR----KDVVTWNAMISGYAQ-HGKGEKALRLFDKMKDEGMKPD----SITFVALLLACNHAGLVD 290 (545)
Q Consensus 220 ~g~~~~A~~~f~~~~~----~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~a~~~~g~~~ 290 (545)
.|+.++|.+.+..+.. +....+-.|+.+-.. ..+..+|+++|++..-. .|. +....--+....+.|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHH
Confidence 6888999999888864 345567777766554 45889999999987652 343 234444455677889999
Q ss_pred HHHHHHHHhHHhcCCCCCHHHHH-HHHHHHhH---cCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHH
Q 009066 291 LGIQYFDSMVNDYGIAAKPDHYT-CMVDLLGR---AGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMN 366 (545)
Q Consensus 291 ~a~~~~~~~~~~~~~~~~~~~~~-~li~~~~~---~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 366 (545)
++..+-....++|...|=...|. .++..+.+ .-..+.-..++..|.-.--..+|-.+...-...|+.+.|....++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 99888877777665555443332 23333333 334455556677774222346888888899999999999999999
Q ss_pred HhcCCCCCCchhHHHHHHHHHH-----cCCchHHHHHHHHhhhCCCccCCceeEEEECCEEEEEecCCCCCCChHHHHHH
Q 009066 367 LFNLNPANAAGCYVQLANIYAA-----MKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEK 441 (545)
Q Consensus 367 ~~~~~p~~~~~~~~~l~~~~~~-----~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (545)
+..+..... .-...+..|.. ..+.+++.+.+..+-... .+|.-..+..-
T Consensus 283 A~~L~~~~~--~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~~------------------------L~~~Dr~Ll~A 336 (421)
T PRK12798 283 ALKLADPDS--ADAARARLYRGAALVASDDAESALEELSQIDRDK------------------------LSERDRALLEA 336 (421)
T ss_pred HHHhccCCC--cchHHHHHHHHHHccCcccHHHHHHHHhcCChhh------------------------CChhhHHHHHH
Confidence 988764433 33444444433 244556666555443322 23444555555
Q ss_pred HHHHHHHHHHcC
Q 009066 442 LKELEKRMKLAG 453 (545)
Q Consensus 442 l~~~~~~m~~~g 453 (545)
+..+-..+...+
T Consensus 337 A~~va~~V~~~p 348 (421)
T PRK12798 337 ARSVARQVRRAP 348 (421)
T ss_pred HHHHHHHHhcCc
Confidence 566666666554
No 370
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.58 E-value=2.9e+02 Score=30.45 Aligned_cols=171 Identities=15% Similarity=0.143 Sum_probs=90.7
Q ss_pred HHHHhCCCHHHHHHHHhhCCcCCHhHHHHHHHHHHHcCChHHHHHHHhhCCCCCcccHHHHHHHhcchhhhccCChHHHH
Q 009066 78 SGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGL 157 (545)
Q Consensus 78 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~g~~~~A~ 157 (545)
..|...|++++|+++-+.-.+.-..++-.-.+.|...+++..|-+++.++. .++-.+.--+ ....+.+ ++
T Consensus 366 k~yLd~g~y~kAL~~ar~~p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~----~~FEEVaLKF-----l~~~~~~-~L 435 (911)
T KOG2034|consen 366 KTYLDKGEFDKALEIARTRPDALETVLLKQADFLFQDKEYLRAAEIYAETL----SSFEEVALKF-----LEINQER-AL 435 (911)
T ss_pred HHHHhcchHHHHHHhccCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh----hhHHHHHHHH-----HhcCCHH-HH
Confidence 467788999999988765421123455566677888888888888887762 3333333333 4444443 55
Q ss_pred HHHHHHHhCCCCCCHHHHHHHH-----HHH-hccCcHH----HHHHHHHH--------HHh-CCCCCCcccHHHHHHHHH
Q 009066 158 KLLRMMIGLGIRPNASSLSSVL-----LGC-SHLSSLQ----LGKQVHQL--------VFK-SPLCKDTTALTPLISMYC 218 (545)
Q Consensus 158 ~~~~~m~~~~~~pd~~t~~~ll-----~~~-~~~~~~~----~a~~~~~~--------~~~-~g~~~~~~~~~~li~~y~ 218 (545)
..|-.=+-..++|...+-..+| ..+ .+.++++ ++..-++. +.+ .....+.....+......
T Consensus 436 ~~~L~KKL~~lt~~dk~q~~~Lv~WLlel~L~~Ln~l~~~de~~~en~~~~~~~~~re~~~~~~~~~~~~nretv~~l~~ 515 (911)
T KOG2034|consen 436 RTFLDKKLDRLTPEDKTQRDALVTWLLELYLEQLNDLDSTDEEALENWRLEYDEVQREFSKFLVLHKDELNRETVYQLLA 515 (911)
T ss_pred HHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHH
Confidence 5443322233455443322222 222 2333332 22211111 111 111222333444555556
Q ss_pred hcCCHHHHHHHHHhccCCChhhHHHHHHHHHHcCChHHHHHHHHH
Q 009066 219 KCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDK 263 (545)
Q Consensus 219 ~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 263 (545)
..|+.+....+-.-|.+ |..++.-+.+.+.+++|++++..
T Consensus 516 ~~~~~e~ll~fA~l~~d-----~~~vv~~~~q~e~yeeaLevL~~ 555 (911)
T KOG2034|consen 516 SHGRQEELLQFANLIKD-----YEFVVSYWIQQENYEEALEVLLN 555 (911)
T ss_pred HccCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHh
Confidence 66777666655444432 55677778888888888887765
No 371
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=57.97 E-value=1.7e+02 Score=31.49 Aligned_cols=50 Identities=28% Similarity=0.335 Sum_probs=33.1
Q ss_pred HHHHHhHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC
Q 009066 315 MVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPAN 374 (545)
Q Consensus 315 li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~ 374 (545)
|-..++|.|.++.-.++++-. ..+.+-....++.+|.++.++|+++.|..
T Consensus 350 Ln~LlgrKG~leklq~YWdV~----------~y~~asVLAnd~~kaiqAae~mfKLk~P~ 399 (1226)
T KOG4279|consen 350 LNSLLGRKGALEKLQEYWDVA----------TYFEASVLANDYQKAIQAAEMMFKLKPPV 399 (1226)
T ss_pred HHHHhhccchHHHHHHHHhHH----------HhhhhhhhccCHHHHHHHHHHHhccCCce
Confidence 334556666666655554432 23445556788999999999999988753
No 372
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=57.17 E-value=1.3e+02 Score=28.10 Aligned_cols=69 Identities=12% Similarity=0.074 Sum_probs=31.7
Q ss_pred hccCChHHHHHHHHHHHh--CCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q 009066 148 VENSWAEDGLKLLRMMIG--LGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYC 218 (545)
Q Consensus 148 ~~~g~~~~A~~~~~~m~~--~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 218 (545)
+..+++.+++...-+--+ +.++|... ..-|-.|++.+.+..+.++-...++..-..+..-|.+++..|.
T Consensus 94 AEmnrWreVLsWvlqyYq~pEklPpkIl--eLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyL 164 (309)
T PF07163_consen 94 AEMNRWREVLSWVLQYYQVPEKLPPKIL--ELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYL 164 (309)
T ss_pred HHHhhHHHHHHHHHHHhcCcccCCHHHH--HHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHH
Confidence 667777766654433322 12333322 2223335555555555555555544322233333444444443
No 373
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=57.04 E-value=10 Score=37.73 Aligned_cols=102 Identities=8% Similarity=0.028 Sum_probs=67.5
Q ss_pred HHHHHccCcHHHHHHHHHHhHHhcCCCCCHHH-HHHHHHHHhHcCCHHHHHHHHHhC-CCCCCH-hHHHHHHHHHHhcCC
Q 009066 280 LLACNHAGLVDLGIQYFDSMVNDYGIAAKPDH-YTCMVDLLGRAGKLVEAVDLIKKM-PFKPQP-AIFGTLLSACRVHKR 356 (545)
Q Consensus 280 l~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~~~~~li~~~~~~g~ 356 (545)
+......+.++.|..++.++++ +.|+-.. |..-..++.+.+++..|+.=+.+. ...|.. ..|--=..++...+.
T Consensus 11 an~~l~~~~fd~avdlysKaI~---ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIE---LDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHh---cCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHH
Confidence 3344566788888888888874 3665444 344447788888888887655544 444433 334444456677788
Q ss_pred HHHHHHHHHHHhcCCCCCCchhHHHHHHHH
Q 009066 357 LDLAEFAAMNLFNLNPANAAGCYVQLANIY 386 (545)
Q Consensus 357 ~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~ 386 (545)
+.+|...|+....+.|+++ .....+.-|
T Consensus 88 ~~~A~~~l~~~~~l~Pnd~--~~~r~~~Ec 115 (476)
T KOG0376|consen 88 FKKALLDLEKVKKLAPNDP--DATRKIDEC 115 (476)
T ss_pred HHHHHHHHHHhhhcCcCcH--HHHHHHHHH
Confidence 8899999999999999886 344444433
No 374
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=56.82 E-value=1.7e+02 Score=27.22 Aligned_cols=183 Identities=8% Similarity=0.074 Sum_probs=114.9
Q ss_pred hccCChHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHhccCcHHHHHHHHHHHHh---CCC--CCCcccHHHHHHHHHh
Q 009066 148 VENSWAEDGLKLLRMMIGLGIRPN---ASSLSSVLLGCSHLSSLQLGKQVHQLVFK---SPL--CKDTTALTPLISMYCK 219 (545)
Q Consensus 148 ~~~g~~~~A~~~~~~m~~~~~~pd---~~t~~~ll~~~~~~~~~~~a~~~~~~~~~---~g~--~~~~~~~~~li~~y~~ 219 (545)
.+...+++|+.-|.+.++..-.-- ...+..++....+.+++++..+.|.+++. ..+ .-+....|++++.-+-
T Consensus 38 l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiSt 117 (440)
T KOG1464|consen 38 LKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYIST 117 (440)
T ss_pred ccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhh
Confidence 456689999999999886422222 23455678888999999999888887753 222 2234566778887777
Q ss_pred cCCHHHHHHHHHhccC-----CChh----hHHHHHHHHHHcCChHHHHHHHHHHHHcCCC----CC-------HHHHHHH
Q 009066 220 CGDLEDACKLFLEIQR-----KDVV----TWNAMISGYAQHGKGEKALRLFDKMKDEGMK----PD-------SITFVAL 279 (545)
Q Consensus 220 ~g~~~~A~~~f~~~~~-----~~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----p~-------~~t~~~l 279 (545)
+.+.+--..+|+.-.+ +|.. +-+.+...|...|.+.+...+++++...-.. -| ...|..=
T Consensus 118 S~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlE 197 (440)
T KOG1464|consen 118 SKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALE 197 (440)
T ss_pred hhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhH
Confidence 7777766666654432 2322 2344666777778888888888887653111 11 1245556
Q ss_pred HHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHH----HHHHhHcCCHHHHHH
Q 009066 280 LLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCM----VDLLGRAGKLVEAVD 330 (545)
Q Consensus 280 l~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l----i~~~~~~g~~~~A~~ 330 (545)
+..|..+.+-..-..++++...-..-.|.+.....+ ..+..+.|++++|..
T Consensus 198 IQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhT 252 (440)
T KOG1464|consen 198 IQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHT 252 (440)
T ss_pred hhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHh
Confidence 677777777777777776654332445555443322 334567788888764
No 375
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=56.42 E-value=3.1e+02 Score=30.22 Aligned_cols=215 Identities=16% Similarity=0.051 Sum_probs=113.1
Q ss_pred hccCcHHHHHHHHHHHHhCCCCCCcc-------cHHHHHH-HHHhcCCHHHHHHHHHhccC--------CChhhHHHHHH
Q 009066 183 SHLSSLQLGKQVHQLVFKSPLCKDTT-------ALTPLIS-MYCKCGDLEDACKLFLEIQR--------KDVVTWNAMIS 246 (545)
Q Consensus 183 ~~~~~~~~a~~~~~~~~~~g~~~~~~-------~~~~li~-~y~~~g~~~~A~~~f~~~~~--------~~~~~~~~li~ 246 (545)
....++++|..+..++...-..|+.. .+++|-. .-...|++++|.++-+.... ..++.+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 45678888888888776543232222 2222211 12236788888877665542 35677788888
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCHHHHHH---H--HHHHHccCcH--HHHHHHHHHhHHhcCCC-----CCHHHHHH
Q 009066 247 GYAQHGKGEKALRLFDKMKDEGMKPDSITFVA---L--LLACNHAGLV--DLGIQYFDSMVNDYGIA-----AKPDHYTC 314 (545)
Q Consensus 247 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~---l--l~a~~~~g~~--~~a~~~~~~~~~~~~~~-----~~~~~~~~ 314 (545)
+..-.|++++|..+..+..+..-.-|...|.. + ...+..+|.. ++....|......+... +-...+..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 88889999999998887765422223332222 2 1234556632 33333343333221111 12234445
Q ss_pred HHHHHhHcCCHHHHHHH----HHhC-CCCCCH--h--HHHHHHHHHHhcCCHHHHHHHHHHHhcCC--CCCCchhHHH--
Q 009066 315 MVDLLGRAGKLVEAVDL----IKKM-PFKPQP--A--IFGTLLSACRVHKRLDLAEFAAMNLFNLN--PANAAGCYVQ-- 381 (545)
Q Consensus 315 li~~~~~~g~~~~A~~~----~~~m-~~~p~~--~--~~~~li~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~~-- 381 (545)
+..++.+ ++.+..- +.-. ...|.. . .+..|+......|+.+.|.....++..+. +.... .|..
T Consensus 586 ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~-~~~a~~ 661 (894)
T COG2909 586 LLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHV-DYLAAA 661 (894)
T ss_pred HHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCc-hHHHHH
Confidence 5555555 3333322 2211 111222 1 22356777888999999998888876532 22121 2222
Q ss_pred -HHH--HHHHcCCchHHHHHHHH
Q 009066 382 -LAN--IYAAMKKWDDVARIRLS 401 (545)
Q Consensus 382 -l~~--~~~~~g~~~~a~~~~~~ 401 (545)
++. .-...|+.+.+.....+
T Consensus 662 ~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 662 YKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHhhHHHhcccCCHHHHHHHHHh
Confidence 222 22455777776665544
No 376
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=55.75 E-value=42 Score=29.52 Aligned_cols=38 Identities=18% Similarity=0.160 Sum_probs=28.8
Q ss_pred CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC
Q 009066 336 PFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPA 373 (545)
Q Consensus 336 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~ 373 (545)
...|++.++..++.++...|+.++|.+..+++..+-|.
T Consensus 139 ~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~ 176 (193)
T PF11846_consen 139 RRRPDPNVYQRYALALALLGDPEEARQWLARARRLYPA 176 (193)
T ss_pred HhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 34577777888888888888888888888777777773
No 377
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=55.54 E-value=69 Score=28.82 Aligned_cols=64 Identities=9% Similarity=-0.022 Sum_probs=41.5
Q ss_pred HHHHHHHHHHhcCCHH-------HHHHHHHHHhcCCCC--C---CchhHHHHHHHHHHcCCchHHHHHHHHhhhCC
Q 009066 343 IFGTLLSACRVHKRLD-------LAEFAAMNLFNLNPA--N---AAGCYVQLANIYAAMKKWDDVARIRLSMKENN 406 (545)
Q Consensus 343 ~~~~li~~~~~~g~~~-------~A~~~~~~~~~~~p~--~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 406 (545)
++--+...|...|+.+ .|...|++..+.+.. . .......++..+.+.|+.++|.+.|.++...+
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 3444555566666633 555666666543322 1 12256678889999999999999999987653
No 378
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=55.51 E-value=20 Score=27.00 Aligned_cols=40 Identities=15% Similarity=0.189 Sum_probs=19.7
Q ss_pred HHHHhcCCCCCCchhHHHHHHHHHHcCCchHHHHHHHHhhh
Q 009066 364 AMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKE 404 (545)
Q Consensus 364 ~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 404 (545)
+++.++.+|++.. .-..++..+...|++++|...+-.+.+
T Consensus 11 l~~~~a~~P~D~~-ar~~lA~~~~~~g~~e~Al~~Ll~~v~ 50 (90)
T PF14561_consen 11 LEAALAANPDDLD-ARYALADALLAAGDYEEALDQLLELVR 50 (90)
T ss_dssp HHHHHHHSTT-HH-HHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred HHHHHHcCCCCHH-HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3344445555544 555555555555555555555554443
No 379
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=55.26 E-value=13 Score=30.21 Aligned_cols=30 Identities=20% Similarity=0.336 Sum_probs=23.1
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 009066 151 SWAEDGLKLLRMMIGLGIRPNASSLSSVLLGC 182 (545)
Q Consensus 151 g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~ 182 (545)
|.-..|..+|++|++.|-+|| .|+.|+..+
T Consensus 109 gsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 109 GSKTDAYAVFRKMLERGNPPD--DWDALLKEA 138 (140)
T ss_pred ccCCcHHHHHHHHHhCCCCCc--cHHHHHHHh
Confidence 555678999999999998988 456666554
No 380
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.13 E-value=16 Score=39.24 Aligned_cols=94 Identities=16% Similarity=0.221 Sum_probs=57.0
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHH
Q 009066 251 HGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVD 330 (545)
Q Consensus 251 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 330 (545)
+.++++.+.+.+...--| .++|..+.+.|-.+-|+.+.+.=..+ .+....+|+++.|++
T Consensus 606 ~k~ydeVl~lI~ns~LvG--------qaiIaYLqKkgypeiAL~FVkD~~tR-------------F~LaLe~gnle~ale 664 (1202)
T KOG0292|consen 606 NKKYDEVLHLIKNSNLVG--------QAIIAYLQKKGYPEIALHFVKDERTR-------------FELALECGNLEVALE 664 (1202)
T ss_pred hhhhHHHHHHHHhcCccc--------HHHHHHHHhcCCcceeeeeecCcchh-------------eeeehhcCCHHHHHH
Confidence 455666666555432222 13444455666666665554332221 123346788888887
Q ss_pred HHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 009066 331 LIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLF 368 (545)
Q Consensus 331 ~~~~m~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 368 (545)
.-.++ .|..+|..|+......|+.+-|+..|++..
T Consensus 665 ~akkl---dd~d~w~rLge~Al~qgn~~IaEm~yQ~~k 699 (1202)
T KOG0292|consen 665 AAKKL---DDKDVWERLGEEALRQGNHQIAEMCYQRTK 699 (1202)
T ss_pred HHHhc---CcHHHHHHHHHHHHHhcchHHHHHHHHHhh
Confidence 77776 366778888888888888888888777764
No 381
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=54.82 E-value=94 Score=24.39 Aligned_cols=27 Identities=30% Similarity=0.549 Sum_probs=22.7
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHH
Q 009066 240 TWNAMISGYAQHGKGEKALRLFDKMKD 266 (545)
Q Consensus 240 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 266 (545)
-|..++.-|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 578888888888888888888888776
No 382
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=54.58 E-value=1.7e+02 Score=27.99 Aligned_cols=17 Identities=24% Similarity=0.094 Sum_probs=11.8
Q ss_pred HHHHHHHHHhcCCCCCC
Q 009066 359 LAEFAAMNLFNLNPANA 375 (545)
Q Consensus 359 ~A~~~~~~~~~~~p~~~ 375 (545)
.|.+...++.+.+|.-+
T Consensus 380 ~AvEAihRAvEFNPHVP 396 (556)
T KOG3807|consen 380 NAVEAIHRAVEFNPHVP 396 (556)
T ss_pred HHHHHHHHHhhcCCCCc
Confidence 45666677777787765
No 383
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=54.07 E-value=53 Score=28.90 Aligned_cols=31 Identities=19% Similarity=0.201 Sum_probs=18.8
Q ss_pred CCCCHHHHHHHHHHHhHcCCHHHHHHHHHhC
Q 009066 305 IAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335 (545)
Q Consensus 305 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 335 (545)
..|++.+|..++..+...|+.++|.+...++
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3566666666666666666666666655555
No 384
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=53.77 E-value=3.4e+02 Score=29.91 Aligned_cols=218 Identities=12% Similarity=0.077 Sum_probs=115.9
Q ss_pred hccCChHHHHHHHHHHHhCCCCCCH----H---HHHHHHHH-HhccCcHHHHHHHHHHHHhC----CCCCCcccHHHHHH
Q 009066 148 VENSWAEDGLKLLRMMIGLGIRPNA----S---SLSSVLLG-CSHLSSLQLGKQVHQLVFKS----PLCKDTTALTPLIS 215 (545)
Q Consensus 148 ~~~g~~~~A~~~~~~m~~~~~~pd~----~---t~~~ll~~-~~~~~~~~~a~~~~~~~~~~----g~~~~~~~~~~li~ 215 (545)
..+.++.+|..+..+....-..|+. . .++.+-.. ....|+++.+..+-+..... -..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 5678899999988887654222222 1 23322221 23567888888887776653 23345666777888
Q ss_pred HHHhcCCHHHHHHHHHhccC----CChh---hHHHHHH--HHHHcCC--hHHHHHHHHHHHHc--CCCC----CHHHHHH
Q 009066 216 MYCKCGDLEDACKLFLEIQR----KDVV---TWNAMIS--GYAQHGK--GEKALRLFDKMKDE--GMKP----DSITFVA 278 (545)
Q Consensus 216 ~y~~~g~~~~A~~~f~~~~~----~~~~---~~~~li~--~~~~~g~--~~~A~~~~~~m~~~--g~~p----~~~t~~~ 278 (545)
+..-.|+++.|..+..+..+ -|+. .|..+.. .+..+|+ ..+.+..|...... +-+| -.-+...
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 88889999999888776654 2443 3333322 3445663 23333333333221 1111 1234444
Q ss_pred HHHHHHcc-CcHHHHHHHHHHhHHhcCCCCCHHHH--HHHHHHHhHcCCHHHHHHHHHhC-----CCCCCH--hHHHHHH
Q 009066 279 LLLACNHA-GLVDLGIQYFDSMVNDYGIAAKPDHY--TCMVDLLGRAGKLVEAVDLIKKM-----PFKPQP--AIFGTLL 348 (545)
Q Consensus 279 ll~a~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~m-----~~~p~~--~~~~~li 348 (545)
++.++.+. +...++..-+.-- ..+...|-...+ ..|+..+...|++++|...++++ .-.|.+ ..-...+
T Consensus 586 ll~~~~r~~~~~~ear~~~~~~-~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v 664 (894)
T COG2909 586 LLRAWLRLDLAEAEARLGIEVG-SVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKV 664 (894)
T ss_pred HHHHHHHHhhhhHHhhhcchhh-hhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHh
Confidence 55555442 1222222222211 111222322223 37888889999999999998877 111222 2222222
Q ss_pred HH--HHhcCCHHHHHHHHHH
Q 009066 349 SA--CRVHKRLDLAEFAAMN 366 (545)
Q Consensus 349 ~~--~~~~g~~~~A~~~~~~ 366 (545)
.. -...||.+.+.....+
T Consensus 665 ~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 665 KLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hHHHhcccCCHHHHHHHHHh
Confidence 22 2456787777666555
No 385
>PF13934 ELYS: Nuclear pore complex assembly
Probab=53.44 E-value=1.8e+02 Score=26.48 Aligned_cols=104 Identities=23% Similarity=0.315 Sum_probs=48.3
Q ss_pred HHHHHHHHH--HcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHH
Q 009066 241 WNAMISGYA--QHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDL 318 (545)
Q Consensus 241 ~~~li~~~~--~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 318 (545)
+...+.|+. .++++++|++++-.- .+.|+-.. -++.++...|+.+.|..+++... ....+......++..
T Consensus 79 ~~~~~~g~W~LD~~~~~~A~~~L~~p---s~~~~~~~--~Il~~L~~~~~~~lAL~y~~~~~---p~l~s~~~~~~~~~~ 150 (226)
T PF13934_consen 79 YIKFIQGFWLLDHGDFEEALELLSHP---SLIPWFPD--KILQALLRRGDPKLALRYLRAVG---PPLSSPEALTLYFVA 150 (226)
T ss_pred HHHHHHHHHHhChHhHHHHHHHhCCC---CCCcccHH--HHHHHHHHCCChhHHHHHHHhcC---CCCCCHHHHHHHHHH
Confidence 334444443 345566666655221 12222111 24555555667777776665442 111222222333333
Q ss_pred HhHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHh
Q 009066 319 LGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRV 353 (545)
Q Consensus 319 ~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~ 353 (545)
..++.+.||..+-+..+-.-....|..++..+..
T Consensus 151 -La~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~~ 184 (226)
T PF13934_consen 151 -LANGLVTEAFSFQRSYPDELRRRLFEQLLEHCLE 184 (226)
T ss_pred -HHcCCHHHHHHHHHhCchhhhHHHHHHHHHHHHH
Confidence 4556777777666665321112355555555543
No 386
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.19 E-value=1.8e+02 Score=26.52 Aligned_cols=60 Identities=13% Similarity=0.146 Sum_probs=38.3
Q ss_pred HHHhHcCCHHHHHHHHHhC---CCCCCHhHHHH---HHH-HHHh--cCCHHHHHHHHHHHhcCCCCCCc
Q 009066 317 DLLGRAGKLVEAVDLIKKM---PFKPQPAIFGT---LLS-ACRV--HKRLDLAEFAAMNLFNLNPANAA 376 (545)
Q Consensus 317 ~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~---li~-~~~~--~g~~~~A~~~~~~~~~~~p~~~~ 376 (545)
+.-+..+++.+|+++|++. ....+..-|.. ++. +++. ..+.-.+...+++-.+++|.-..
T Consensus 162 ~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~d 230 (288)
T KOG1586|consen 162 QYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTD 230 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccc
Confidence 3345678889999999887 23333333432 222 2222 26777788889999999997654
No 387
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.02 E-value=3.7e+02 Score=30.02 Aligned_cols=29 Identities=24% Similarity=0.399 Sum_probs=24.7
Q ss_pred ccHHHHHHHhcchhhhccCChHHHHHHHHHHHhC
Q 009066 133 VAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGL 166 (545)
Q Consensus 133 ~~~~~li~~~~~~g~~~~g~~~~A~~~~~~m~~~ 166 (545)
.-|..|+..| ...|..++|+++|++....
T Consensus 505 ~~y~~Li~LY-----~~kg~h~~AL~ll~~l~d~ 533 (877)
T KOG2063|consen 505 KKYRELIELY-----ATKGMHEKALQLLRDLVDE 533 (877)
T ss_pred ccHHHHHHHH-----HhccchHHHHHHHHHHhcc
Confidence 3578899999 9999999999999998763
No 388
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=52.50 E-value=1.1e+02 Score=23.91 Aligned_cols=61 Identities=16% Similarity=0.215 Sum_probs=35.6
Q ss_pred HHHHHHHcCChHHHHHHHhhCCCCCcccHHHHHHHhcchhhhccCChHHHHHHHHHHHhCCCCCCHHHH
Q 009066 107 MISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSL 175 (545)
Q Consensus 107 li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~pd~~t~ 175 (545)
-+..+...|++++|...=.....||..+|-+|-.. +.|..+++...+.++-..| .|....|
T Consensus 46 r~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a~-------klGL~~~~e~~l~rla~~g-~~~~q~F 106 (116)
T PF09477_consen 46 RLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCAW-------KLGLASALESRLTRLASSG-SPELQAF 106 (116)
T ss_dssp HHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHHH-------HCT-HHHHHHHHHHHCT-S-SHHHHHH
T ss_pred HHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHHH-------hhccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 34456677888888554455567788888776653 4666777777777776655 4443344
No 389
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=51.47 E-value=1.1e+02 Score=23.90 Aligned_cols=28 Identities=14% Similarity=0.306 Sum_probs=23.6
Q ss_pred ccHHHHHHHhcchhhhccCChHHHHHHHHHHHh
Q 009066 133 VAWTAMISGYMKFGYVENSWAEDGLKLLRMMIG 165 (545)
Q Consensus 133 ~~~~~li~~~~~~g~~~~g~~~~A~~~~~~m~~ 165 (545)
.-|..++.-| ...|..++|++++.+...
T Consensus 40 ~~~~eL~~lY-----~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 40 GKYQELVDLY-----QGKGLHRKALELLKKLAD 67 (108)
T ss_pred CCHHHHHHHH-----HccCccHHHHHHHHHHhc
Confidence 3578888888 888999999999988876
No 390
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=51.31 E-value=28 Score=31.32 Aligned_cols=58 Identities=21% Similarity=0.256 Sum_probs=39.5
Q ss_pred HHhHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC
Q 009066 318 LLGRAGKLVEAVDLIKKM-PFKP-QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANA 375 (545)
Q Consensus 318 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~ 375 (545)
+..+.|+.+.|.+++.+. ...| ....|-.+...--+.|+++.|.+.+++.++++|.+.
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 344566777777777766 3223 456777777777778888888888888877776643
No 391
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=50.71 E-value=2.7e+02 Score=27.75 Aligned_cols=55 Identities=25% Similarity=0.178 Sum_probs=38.2
Q ss_pred CCcccHHHHHHHhcchhhhccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC
Q 009066 130 KSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLS 186 (545)
Q Consensus 130 ~~~~~~~~li~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~ 186 (545)
++-..+..+|+++.|. ++..+++.|+-.+.+|.+.|-.|-...-..+.-++...|
T Consensus 244 k~gD~hYdliSA~hKS--vRGSD~dAALyylARmi~~GeDp~yiARRlv~~AsEDIG 298 (436)
T COG2256 244 KDGDAHYDLISALHKS--VRGSDPDAALYYLARMIEAGEDPLYIARRLVRIASEDIG 298 (436)
T ss_pred CCcchHHHHHHHHHHh--hccCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcc
Confidence 4445666777777555 677889999999999999886676555555555544433
No 392
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=50.68 E-value=30 Score=23.90 Aligned_cols=30 Identities=27% Similarity=0.339 Sum_probs=16.2
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 009066 237 DVVTWNAMISGYAQHGKGEKALRLFDKMKD 266 (545)
Q Consensus 237 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 266 (545)
|..-.-.+|.+|.+.|++++|.++++++..
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 333344456666666666666666665543
No 393
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=50.51 E-value=3.5e+02 Score=29.02 Aligned_cols=31 Identities=32% Similarity=0.635 Sum_probs=20.6
Q ss_pred HHHHHHHHHH-----HhHcCCHHHHHHHHHhCCCCC
Q 009066 309 PDHYTCMVDL-----LGRAGKLVEAVDLIKKMPFKP 339 (545)
Q Consensus 309 ~~~~~~li~~-----~~~~g~~~~A~~~~~~m~~~p 339 (545)
..++..|++. +...|++++|++.++++++-|
T Consensus 500 ~~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~L~liP 535 (613)
T PF04097_consen 500 RETFQLLLDLAEFFDLYHAGQYEQALDIIEKLDLIP 535 (613)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHTT-S-
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCC
Confidence 3445555443 467899999999999998777
No 394
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=50.32 E-value=1e+02 Score=23.04 Aligned_cols=39 Identities=15% Similarity=0.151 Sum_probs=27.4
Q ss_pred hcCCHHHHHHHHHhccCCChhhHHHHHHHHHHcCChHHHH
Q 009066 219 KCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKAL 258 (545)
Q Consensus 219 ~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~ 258 (545)
..|+.+.|.++++.++ +....|..+++++...|+.+-|.
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 3467777777777777 77777777777777777655443
No 395
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=50.29 E-value=2.4e+02 Score=27.03 Aligned_cols=84 Identities=18% Similarity=0.018 Sum_probs=57.8
Q ss_pred CcHHHHHHHHHHhHHhcCC---CCCHHHHHHHHHHHhHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHH
Q 009066 287 GLVDLGIQYFDSMVNDYGI---AAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFA 363 (545)
Q Consensus 287 g~~~~a~~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~A~~~ 363 (545)
+-.+++.+.|........- ..++.....+.....+.|..++-..+++.....++...-..++.+++...+.+.-.++
T Consensus 144 ~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~ 223 (324)
T PF11838_consen 144 ECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRL 223 (324)
T ss_dssp HHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHH
T ss_pred hHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHH
Confidence 3467788888887763112 4466677777888888888776666666554446778888999999999999998999
Q ss_pred HHHHhcC
Q 009066 364 AMNLFNL 370 (545)
Q Consensus 364 ~~~~~~~ 370 (545)
++.++.-
T Consensus 224 l~~~l~~ 230 (324)
T PF11838_consen 224 LDLLLSN 230 (324)
T ss_dssp HHHHHCT
T ss_pred HHHHcCC
Confidence 9988884
No 396
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=50.28 E-value=1.6e+02 Score=25.60 Aligned_cols=27 Identities=15% Similarity=0.293 Sum_probs=11.8
Q ss_pred HHHHHHHHHhC-CCCCCHhHHHHHHHHH
Q 009066 325 LVEAVDLIKKM-PFKPQPAIFGTLLSAC 351 (545)
Q Consensus 325 ~~~A~~~~~~m-~~~p~~~~~~~li~~~ 351 (545)
+++|.+.|++. ..+|+..+|+.-+...
T Consensus 96 F~kA~~~FqkAv~~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 96 FEKATEYFQKAVDEDPNNELYRKSLEMA 123 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 34444444444 3345555555555444
No 397
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=49.73 E-value=1.6e+02 Score=26.60 Aligned_cols=93 Identities=19% Similarity=0.283 Sum_probs=50.6
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC---CHHHHH--HHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHH
Q 009066 240 TWNAMISGYAQHGKGEKALRLFDKMKDEGMKP---DSITFV--ALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTC 314 (545)
Q Consensus 240 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~--~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 314 (545)
-.|.|+--|.-+..+.+|-+.|.. +.|+.| |..++. .-+......|+++.|.+....+... -+..|.+.+--
T Consensus 28 d~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~Pe-iLd~n~~l~F~ 104 (228)
T KOG2659|consen 28 DLNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPE-ILDTNRELFFH 104 (228)
T ss_pred hHHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChH-HHccchhHHHH
Confidence 355666555555556666666544 233443 333332 3345556777777777777666543 34444433332
Q ss_pred HHH----HHhHcCCHHHHHHHHHhC
Q 009066 315 MVD----LLGRAGKLVEAVDLIKKM 335 (545)
Q Consensus 315 li~----~~~~~g~~~~A~~~~~~m 335 (545)
|.. -+.|.|..++|+++.+.-
T Consensus 105 Lq~q~lIEliR~~~~eeal~F~q~~ 129 (228)
T KOG2659|consen 105 LQQLHLIELIREGKTEEALEFAQTK 129 (228)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 222 245777788888877643
No 398
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=49.27 E-value=2.9e+02 Score=27.79 Aligned_cols=122 Identities=13% Similarity=0.053 Sum_probs=66.4
Q ss_pred CCCcccHHHHHHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 009066 204 CKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC 283 (545)
Q Consensus 204 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 283 (545)
.++..+-..-+.+++..+..+..-.+-.-....|...-..-+.+....|. .+|......... .|+......+....
T Consensus 158 d~d~~Vra~A~raLG~l~~~~a~~~L~~al~d~~~~VR~aA~~al~~lG~-~~A~~~l~~~~~---~~g~~~~~~l~~~l 233 (410)
T TIGR02270 158 HEDALVRAAALRALGELPRRLSESTLRLYLRDSDPEVRFAALEAGLLAGS-RLAWGVCRRFQV---LEGGPHRQRLLVLL 233 (410)
T ss_pred CCCHHHHHHHHHHHHhhccccchHHHHHHHcCCCHHHHHHHHHHHHHcCC-HhHHHHHHHHHh---ccCccHHHHHHHHH
Confidence 34455555556666666554333333333445666666666777777776 566666555332 22222222222222
Q ss_pred HccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhCC
Q 009066 284 NHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 336 (545)
Q Consensus 284 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 336 (545)
...|. +++...+..+.++ +. +-...+.++++.|+...+--+.+.|.
T Consensus 234 al~~~-~~a~~~L~~ll~d----~~--vr~~a~~AlG~lg~p~av~~L~~~l~ 279 (410)
T TIGR02270 234 AVAGG-PDAQAWLRELLQA----AA--TRREALRAVGLVGDVEAAPWCLEAMR 279 (410)
T ss_pred HhCCc-hhHHHHHHHHhcC----hh--hHHHHHHHHHHcCCcchHHHHHHHhc
Confidence 22232 3566666565542 22 45567777788888877777777774
No 399
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=48.69 E-value=62 Score=23.67 Aligned_cols=47 Identities=13% Similarity=0.104 Sum_probs=32.1
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHccCcHHHHHHHH
Q 009066 250 QHGKGEKALRLFDKMKDEGMKPDS--ITFVALLLACNHAGLVDLGIQYF 296 (545)
Q Consensus 250 ~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~ 296 (545)
..++..+|+..|+..++.-..|.. .++..++.+++..|++.+.+++-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777888888887764333322 35667778888888887776653
No 400
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=48.30 E-value=27 Score=19.57 Aligned_cols=28 Identities=11% Similarity=0.118 Sum_probs=18.4
Q ss_pred CCHHHHHHHHHHHhcCCCCCCchhHHHHH
Q 009066 355 KRLDLAEFAAMNLFNLNPANAAGCYVQLA 383 (545)
Q Consensus 355 g~~~~A~~~~~~~~~~~p~~~~~~~~~l~ 383 (545)
|+.+.|..+|++++...|.... .+...+
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~-~W~~y~ 28 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVE-LWLKYA 28 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChH-HHHHHH
Confidence 4567777888888777776554 554443
No 401
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=47.53 E-value=2.9e+02 Score=27.27 Aligned_cols=109 Identities=17% Similarity=0.294 Sum_probs=75.3
Q ss_pred HHHHHHHhHcCCHHHHHHHHHhCCCCCCHhHHHHH------------HHHHHhcCCHHHHHHHHHHHhcC---CCCCC--
Q 009066 313 TCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTL------------LSACRVHKRLDLAEFAAMNLFNL---NPANA-- 375 (545)
Q Consensus 313 ~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l------------i~~~~~~g~~~~A~~~~~~~~~~---~p~~~-- 375 (545)
..|...+-.+|++++|..++.+.++ .||+++ +..|...+|+-.|.-+-+++... +|+-.
T Consensus 135 k~L~~ike~~Gdi~~Aa~il~el~V----ETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~l 210 (439)
T KOG1498|consen 135 KMLAKIKEEQGDIAEAADILCELQV----ETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQEL 210 (439)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhcch----hhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHH
Confidence 4566778889999999999998853 334332 45677888999888887777442 22211
Q ss_pred -chhHHHHHHHHHHcCCchHHHHHHHHhhhCCCccCCceeEEEECCEEEEE
Q 009066 376 -AGCYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEF 425 (545)
Q Consensus 376 -~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~ 425 (545)
...|..++....+.+.+=++-+.++...+.|-.+....-|+.+-..+-.|
T Consensus 211 KlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~vL~~iv~f 261 (439)
T KOG1498|consen 211 KLKYYELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIEVLRSIVSF 261 (439)
T ss_pred HHHHHHHHHHhcccccchhhHHHHHHHHhcccccccChhhhhhhhhhheeE
Confidence 12577888888899999999999999988776655444576543333334
No 402
>PRK10941 hypothetical protein; Provisional
Probab=46.98 E-value=1.4e+02 Score=27.92 Aligned_cols=64 Identities=11% Similarity=0.037 Sum_probs=48.9
Q ss_pred HHHHHHHhHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCc
Q 009066 313 TCMVDLLGRAGKLVEAVDLIKKM-PFKP-QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAA 376 (545)
Q Consensus 313 ~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 376 (545)
+.|-.+|.+.++++.|+++.+.+ .+.| ++.-|.--.-.|.+.|.+..|..-++..++.-|+++.
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~ 250 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPI 250 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchh
Confidence 45666778888888888888877 3445 4455666667788889999998888888888888764
No 403
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=46.80 E-value=3e+02 Score=27.16 Aligned_cols=64 Identities=13% Similarity=0.091 Sum_probs=48.1
Q ss_pred CHhHHHHH---HHHHHhcCCHHHHHHHHHHHhcCCCC-CCchhHHHHHHHH-HHcCCchHHHHHHHHhhh
Q 009066 340 QPAIFGTL---LSACRVHKRLDLAEFAAMNLFNLNPA-NAAGCYVQLANIY-AAMKKWDDVARIRLSMKE 404 (545)
Q Consensus 340 ~~~~~~~l---i~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~l~~~~-~~~g~~~~a~~~~~~m~~ 404 (545)
|...|.++ +..+.+.|-+..|.+..+-++.++|. |+. .-...++.| .++++++--.++.+....
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~-g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPL-GVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcc-hhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 44455554 45678899999999999999999998 665 556666666 577888877777776554
No 404
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=46.67 E-value=1.4e+02 Score=23.38 Aligned_cols=80 Identities=14% Similarity=0.118 Sum_probs=42.8
Q ss_pred CcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Q 009066 186 SSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMK 265 (545)
Q Consensus 186 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 265 (545)
...++|..|.+.+...+- ....+--.-+..+.+.|++++|...=.....||...|-++-. .+.|..+++...+.++.
T Consensus 20 HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla 96 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLA 96 (116)
T ss_dssp T-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHH
Confidence 345667777766666552 222233333445666777777744444444567777766544 35666667766666665
Q ss_pred HcC
Q 009066 266 DEG 268 (545)
Q Consensus 266 ~~g 268 (545)
..|
T Consensus 97 ~~g 99 (116)
T PF09477_consen 97 SSG 99 (116)
T ss_dssp T-S
T ss_pred hCC
Confidence 443
No 405
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=45.47 E-value=1.4e+02 Score=27.30 Aligned_cols=87 Identities=15% Similarity=0.076 Sum_probs=59.0
Q ss_pred HHHhHcCCHHHHHHHHHhC---------CCCCCHhHHH-----------HHHHHHHhcCCHHHHHHHHHHHhcCCCCCCc
Q 009066 317 DLLGRAGKLVEAVDLIKKM---------PFKPQPAIFG-----------TLLSACRVHKRLDLAEFAAMNLFNLNPANAA 376 (545)
Q Consensus 317 ~~~~~~g~~~~A~~~~~~m---------~~~p~~~~~~-----------~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 376 (545)
.-+.+.|++.+|..-|.+. ..+|-..-|- ..-..+...|++-++++--..++...|.+.-
T Consensus 186 N~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvK 265 (329)
T KOG0545|consen 186 NRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVK 265 (329)
T ss_pred hhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHH
Confidence 3455666666666555443 2344433332 2234455678889999999999999999987
Q ss_pred hhHHHHHHHHHHcCCchHHHHHHHHhhh
Q 009066 377 GCYVQLANIYAAMKKWDDVARIRLSMKE 404 (545)
Q Consensus 377 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 404 (545)
+|..-+.+.+..=+..+|.+=|....+
T Consensus 266 -A~frRakAhaa~Wn~~eA~~D~~~vL~ 292 (329)
T KOG0545|consen 266 -AYFRRAKAHAAVWNEAEAKADLQKVLE 292 (329)
T ss_pred -HHHHHHHHHHhhcCHHHHHHHHHHHHh
Confidence 888888777777677777777776655
No 406
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.23 E-value=81 Score=34.35 Aligned_cols=100 Identities=11% Similarity=0.130 Sum_probs=52.1
Q ss_pred CCHHHHHHHHhcCCCCCeehHHHHHHHHHhCCCHHHHHHHHhhCC--------------------------cCCHhHHHH
Q 009066 53 DDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP--------------------------EKNSVSWSA 106 (545)
Q Consensus 53 g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~a~~~~~~~~--------------------------~~~~~~~~~ 106 (545)
|+++.|++.-..+- |...|..|.....+.|+.+-|+..|++.. .++..+..-
T Consensus 657 gnle~ale~akkld--d~d~w~rLge~Al~qgn~~IaEm~yQ~~knfekLsfLYliTgn~eKL~Km~~iae~r~D~~~~~ 734 (1202)
T KOG0292|consen 657 GNLEVALEAAKKLD--DKDVWERLGEEALRQGNHQIAEMCYQRTKNFEKLSFLYLITGNLEKLSKMMKIAEIRNDATGQF 734 (1202)
T ss_pred CCHHHHHHHHHhcC--cHHHHHHHHHHHHHhcchHHHHHHHHHhhhhhheeEEEEEeCCHHHHHHHHHHHHhhhhhHHHH
Confidence 56666655554443 33456666665556666665555555544 111111111
Q ss_pred HHHHHHHcCChHHHHHHHhhCCCCCcccHHHHHHHhcchhhhccCChHHHHHHHHHHHhC
Q 009066 107 MISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGL 166 (545)
Q Consensus 107 li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~g~~~~A~~~~~~m~~~ 166 (545)
...+ -.|++++-.+++......+..- +.+ ..+|.-++|.++..+....
T Consensus 735 qnal--Yl~dv~ervkIl~n~g~~~lay----lta------~~~G~~~~ae~l~ee~~~~ 782 (1202)
T KOG0292|consen 735 QNAL--YLGDVKERVKILENGGQLPLAY----LTA------AAHGLEDQAEKLGEELEKQ 782 (1202)
T ss_pred HHHH--HhccHHHHHHHHHhcCcccHHH----HHH------hhcCcHHHHHHHHHhhccc
Confidence 1112 2467777777776654433211 111 4567778888888887653
No 407
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=44.74 E-value=1.8e+02 Score=24.20 Aligned_cols=51 Identities=12% Similarity=0.083 Sum_probs=38.4
Q ss_pred CCcccHHHHHHHhcchhhhccCC-hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc
Q 009066 130 KSVVAWTAMISGYMKFGYVENSW-AEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHL 185 (545)
Q Consensus 130 ~~~~~~~~li~~~~~~g~~~~g~-~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~ 185 (545)
.+-.+|..++.+. .+..- ---+..+|..|.+.+.+++..-|..++.+|.+.
T Consensus 77 ~~~ssf~~if~Sl-----snSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 77 LDNSSFHIIFKSL-----SNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred cccchHHHHHHHH-----ccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence 3556788888887 55444 345677888888888888999999999888764
No 408
>PRK13342 recombination factor protein RarA; Reviewed
Probab=44.66 E-value=3.4e+02 Score=27.29 Aligned_cols=116 Identities=17% Similarity=0.130 Sum_probs=62.7
Q ss_pred hHHHHHHHHHHHhC---CC-CCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHH
Q 009066 153 AEDGLKLLRMMIGL---GI-RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK 228 (545)
Q Consensus 153 ~~~A~~~~~~m~~~---~~-~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~ 228 (545)
.++...++++.... |+ ..+......++..+ .|+...+..+++.+...+.. . ..+...+
T Consensus 153 ~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~---I-------------t~~~v~~ 214 (413)
T PRK13342 153 EEDIEQLLKRALEDKERGLVELDDEALDALARLA--NGDARRALNLLELAALGVDS---I-------------TLELLEE 214 (413)
T ss_pred HHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCC---C-------------CHHHHHH
Confidence 35555666655432 33 44555555554433 67777777777766543111 1 1122222
Q ss_pred HHHhc---cCCChhhHHHHHHHHHH---cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 009066 229 LFLEI---QRKDVVTWNAMISGYAQ---HGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHA 286 (545)
Q Consensus 229 ~f~~~---~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 286 (545)
++... ..++...+..+++++.+ .++.+.|+..+..|.+.|..|....-..+..++...
T Consensus 215 ~~~~~~~~~d~~~~~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edi 278 (413)
T PRK13342 215 ALQKRAARYDKDGDEHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDI 278 (413)
T ss_pred HHhhhhhccCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhh
Confidence 22221 12222334455555554 478889999999999888887766555555554433
No 409
>PRK13342 recombination factor protein RarA; Reviewed
Probab=44.43 E-value=3.5e+02 Score=27.26 Aligned_cols=47 Identities=21% Similarity=0.207 Sum_probs=27.4
Q ss_pred HHHHHHHhcchhhhccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 009066 135 WTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCS 183 (545)
Q Consensus 135 ~~~li~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~ 183 (545)
+..+++++.+. .+.++++.|+..+..|.+.|..|....-..+..++.
T Consensus 230 ~~~~isa~~ks--~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~e 276 (413)
T PRK13342 230 HYDLISALHKS--IRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASE 276 (413)
T ss_pred HHHHHHHHHHH--HhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 44445544211 334677778888888887777776555444444443
No 410
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=44.27 E-value=2.7e+02 Score=25.94 Aligned_cols=160 Identities=12% Similarity=0.043 Sum_probs=0.0
Q ss_pred HhcCCHHHHHHHHHhccCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHHccCcHH-HH
Q 009066 218 CKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE----GMKPDSITFVALLLACNHAGLVD-LG 292 (545)
Q Consensus 218 ~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~~t~~~ll~a~~~~g~~~-~a 292 (545)
.+.+++++|.+++..- ...+.++|+..-|-++-.-|.+. +.++|......++..+...+.-+ +-
T Consensus 1 v~~kky~eAidLL~~G-----------a~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r 69 (260)
T PF04190_consen 1 VKQKKYDEAIDLLYSG-----------ALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPER 69 (260)
T ss_dssp HHTT-HHHHHHHHHHH-----------HHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTH
T ss_pred CccccHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchH
Q ss_pred HHHHHHhHHhc----CCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 009066 293 IQYFDSMVNDY----GIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLF 368 (545)
Q Consensus 293 ~~~~~~~~~~~----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 368 (545)
.++.+.+.+=. .-.-++.....+...|.+.|++.+|...|--.. .|+...+..++.-....|...++
T Consensus 70 ~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~-~~~~~~~~~ll~~~~~~~~~~e~-------- 140 (260)
T PF04190_consen 70 KKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGT-DPSAFAYVMLLEEWSTKGYPSEA-------- 140 (260)
T ss_dssp HHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS--HHHHHHHHHHHHHHHHHTSS--H--------
T ss_pred HHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcC-ChhHHHHHHHHHHHHHhcCCcch--------
Q ss_pred cCCCCCCchhHHHHHHHHHHcCCchHHHHHHHHhhh
Q 009066 369 NLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKE 404 (545)
Q Consensus 369 ~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 404 (545)
.. .....+--|...|+...|...+....+
T Consensus 141 ------dl-fi~RaVL~yL~l~n~~~A~~~~~~f~~ 169 (260)
T PF04190_consen 141 ------DL-FIARAVLQYLCLGNLRDANELFDTFTS 169 (260)
T ss_dssp ------HH-HHHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred ------hH-HHHHHHHHHHHhcCHHHHHHHHHHHHH
No 411
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.50 E-value=3.8e+02 Score=27.42 Aligned_cols=212 Identities=12% Similarity=0.001 Sum_probs=0.0
Q ss_pred HHHHHHHhhCCCCC----------cccHHHHHHHhcchhhhccCChHHHHHHHHHHHhCCCCCCH---------HHHHHH
Q 009066 118 DKAVELFKVAPVKS----------VVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNA---------SSLSSV 178 (545)
Q Consensus 118 ~~A~~~f~~~~~~~----------~~~~~~li~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~pd~---------~t~~~l 178 (545)
|+|....++.++.| +.+.-.++.+- .-.|++.+|++-...|.+.-..-.. ..-..+
T Consensus 299 De~i~q~eklkq~d~~srilsm~km~~LE~iv~c~-----lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~Ll 373 (629)
T KOG2300|consen 299 DEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCR-----LVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLL 373 (629)
T ss_pred HHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHH-----HHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHH
Q ss_pred HHHHhccCcHHHHHHHHHHHHhCCCCCCcccH--HHHHHHHHhcCCHHHHHHHHHhccCCChhhHHHHHH----------
Q 009066 179 LLGCSHLSSLQLGKQVHQLVFKSPLCKDTTAL--TPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMIS---------- 246 (545)
Q Consensus 179 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~--~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~---------- 246 (545)
...|...+.++.|+.-|....+.--..|...+ ..+.-.|.+.|+.+.-.++++.+..++..++.+-..
T Consensus 374 Glys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~gl 453 (629)
T KOG2300|consen 374 GLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGL 453 (629)
T ss_pred hhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHH
Q ss_pred HHHHcCChHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHH----HHHHHH
Q 009066 247 GYAQHGKGEKALRLFDKMKDEG-----MKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDH----YTCMVD 317 (545)
Q Consensus 247 ~~~~~g~~~~A~~~~~~m~~~g-----~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~----~~~li~ 317 (545)
-....+++.||...+++-++.. .+...-....|-..+...|+..++.+...-...--.-.||..+ -..+-+
T Consensus 454 faf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~vqLws~si~~~ 533 (629)
T KOG2300|consen 454 FAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPVQLWSSSILTD 533 (629)
T ss_pred HHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchHHHHHHHHHHH
Q ss_pred HHhHcCC--HHHHHHHHHh
Q 009066 318 LLGRAGK--LVEAVDLIKK 334 (545)
Q Consensus 318 ~~~~~g~--~~~A~~~~~~ 334 (545)
.|..+|+ .++..+.|..
T Consensus 534 L~~a~g~~~~~~e~e~~~~ 552 (629)
T KOG2300|consen 534 LYQALGEKGNEMENEAFRK 552 (629)
T ss_pred HHHHhCcchhhHHHHHHHH
No 412
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=42.89 E-value=60 Score=19.52 Aligned_cols=19 Identities=16% Similarity=-0.123 Sum_probs=9.5
Q ss_pred HHHHHHHHhcCCHHHHHHH
Q 009066 345 GTLLSACRVHKRLDLAEFA 363 (545)
Q Consensus 345 ~~li~~~~~~g~~~~A~~~ 363 (545)
-.+...+-..|++++|+.+
T Consensus 5 y~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 5 YGLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHH
Confidence 3444445555555555555
No 413
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=42.55 E-value=52 Score=31.02 Aligned_cols=41 Identities=27% Similarity=0.429 Sum_probs=33.2
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 009066 240 TWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 280 (545)
Q Consensus 240 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 280 (545)
-||..|..-.+.|++++|+.++++.++.|..--..||...+
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 47889999999999999999999999998775555554433
No 414
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=41.99 E-value=42 Score=24.91 Aligned_cols=32 Identities=19% Similarity=0.193 Sum_probs=15.9
Q ss_pred HHHcCChHHHHHHHhhCCCCCcccHHHHHHHh
Q 009066 111 YIECGQLDKAVELFKVAPVKSVVAWTAMISGY 142 (545)
Q Consensus 111 ~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~ 142 (545)
-+...+.++|.++++.++.++..+|.+...++
T Consensus 40 ~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL 71 (84)
T cd08326 40 QAAGSRRDQARQLLIDLETRGKQAFPAFLSAL 71 (84)
T ss_pred HcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 33344445555555555555555555555554
No 415
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=41.95 E-value=2.1e+02 Score=23.93 Aligned_cols=49 Identities=14% Similarity=0.273 Sum_probs=25.9
Q ss_pred ChhhHHHHHHHHHHcCC-hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 009066 237 DVVTWNAMISGYAQHGK-GEKALRLFDKMKDEGMKPDSITFVALLLACNH 285 (545)
Q Consensus 237 ~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 285 (545)
+-.+|.+++.+..+..- ---+..+|.-|++.+.+++..-|..++.+|.+
T Consensus 78 ~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~ 127 (145)
T PF13762_consen 78 DNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALR 127 (145)
T ss_pred ccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Confidence 34455555555544333 22345555555555556666666666655544
No 416
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=41.61 E-value=1.6e+02 Score=23.83 Aligned_cols=42 Identities=12% Similarity=0.063 Sum_probs=30.8
Q ss_pred HHHHHHHHHhc--CCCCCCchhHHHHHHHHHHcCCchHHHHHHHH
Q 009066 359 LAEFAAMNLFN--LNPANAAGCYVQLANIYAAMKKWDDVARIRLS 401 (545)
Q Consensus 359 ~A~~~~~~~~~--~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 401 (545)
.+..+|..|.. ++-..+. .|...+..+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~-fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLAL-FYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHH-HHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHH-HHHHHHHHHHHcCCHHHHHHHHHh
Confidence 77777777754 4455555 788888888888999998888865
No 417
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=41.37 E-value=29 Score=28.24 Aligned_cols=34 Identities=32% Similarity=0.471 Sum_probs=25.7
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 009066 248 YAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC 283 (545)
Q Consensus 248 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 283 (545)
.-..|.-.+|..+|++|++.|-+||. |+.|+..+
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 34456677899999999999999985 55666544
No 418
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=41.31 E-value=75 Score=24.02 Aligned_cols=53 Identities=11% Similarity=0.052 Sum_probs=34.3
Q ss_pred HhcCCHHHHHHHHHHHhcCC-----CC---CCchhHHHHHHHHHHcCCchHHHHHHHHhhh
Q 009066 352 RVHKRLDLAEFAAMNLFNLN-----PA---NAAGCYVQLANIYAAMKKWDDVARIRLSMKE 404 (545)
Q Consensus 352 ~~~g~~~~A~~~~~~~~~~~-----p~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 404 (545)
.+.|++..|.+.+.+.++.. +. ....+...++......|.+++|...+++..+
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 45677777766666665422 11 0011445677778888999999999887754
No 419
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=40.97 E-value=1.9e+02 Score=23.36 Aligned_cols=56 Identities=16% Similarity=0.024 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHhHcCCHHHHHHHHHhCCCCCCHhHH-HHHHHHHHhcCCHHHHHHHH
Q 009066 309 PDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIF-GTLLSACRVHKRLDLAEFAA 364 (545)
Q Consensus 309 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~-~~li~~~~~~g~~~~A~~~~ 364 (545)
..+-.++..++.-.|..++|.++++..+.-++-... .-++..|+...+.++...+-
T Consensus 66 LscvEAlAAaLyI~G~~~~A~~lL~~FkWG~~F~~LN~elLe~Y~~~~~~~ev~~~q 122 (127)
T PF04034_consen 66 LSCVEALAAALYILGFKEQAEELLSKFKWGHTFLELNKELLEAYAKCKTSEEVIEIQ 122 (127)
T ss_pred ccHHHHHHHHHHHcCCHHHHHHHHhcCCCcHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 344455666666666666666666666433333322 23555565555554444433
No 420
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=40.39 E-value=1e+02 Score=25.52 Aligned_cols=63 Identities=13% Similarity=-0.043 Sum_probs=42.8
Q ss_pred HHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCC
Q 009066 325 LVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKK 391 (545)
Q Consensus 325 ~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~ 391 (545)
-+.|.++.+-|+ .....-.........|++..|..+.+.++..+|++.. +-...+++|...|.
T Consensus 57 ~~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~-ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 57 EEEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEE-ARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHH-HHHHHHHHHHHHHH
Confidence 355666777774 2223334445566789999999999999999999887 77777877766654
No 421
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=40.28 E-value=1.3e+02 Score=30.25 Aligned_cols=44 Identities=20% Similarity=0.224 Sum_probs=30.1
Q ss_pred HHhCCCCCCH--hHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC
Q 009066 332 IKKMPFKPQP--AIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANA 375 (545)
Q Consensus 332 ~~~m~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~ 375 (545)
|-...++|.. .+.++-++.+.+++++..|-.+.++++++.|...
T Consensus 289 FThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~ 334 (422)
T PF06957_consen 289 FTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPE 334 (422)
T ss_dssp HCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCH
T ss_pred HhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHH
Confidence 3333444533 4567777888899999999999999999998764
No 422
>PRK11619 lytic murein transglycosylase; Provisional
Probab=40.03 E-value=5.1e+02 Score=27.96 Aligned_cols=297 Identities=10% Similarity=0.068 Sum_probs=140.3
Q ss_pred hCCCChHHHHHHHccCCCC---ChhhHHHHHHHHHcCCCCHHHHHHHHhcCC-CCCe-ehHHHHHHHHHhCCCHHHHHHH
Q 009066 18 KQRGKLKDAQELFDKIPQP---DVVSYNIMLSCILLNSDDVVAAFDFFQRLP-IKDT-ASWNTMISGFVQKKNMAKARDL 92 (545)
Q Consensus 18 ~~g~~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~~g~~~~A~~~~~~m~-~~d~-~~~~~li~~~~~~g~~~~a~~~ 92 (545)
+.|+ +..+.++-..+... ....|-.+.... .. ..+++...++++-+ -|-. ..-..-+..+++.+++...+..
T Consensus 45 ~~g~-~~~~~~~~~~l~d~pL~~yl~y~~L~~~l-~~-~~~~ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~~~~~~ 121 (644)
T PRK11619 45 DNRQ-MDVVEQLMPTLKDYPLYPYLEYRQLTQDL-MN-QPAVQVTNFIRANPTLPPARSLQSRFVNELARREDWRGLLAF 121 (644)
T ss_pred HCCC-HHHHHHHHHhccCCCcHhHHHHHHHHhcc-cc-CCHHHHHHHHHHCCCCchHHHHHHHHHHHHHHccCHHHHHHh
Confidence 3455 77777777666532 223444444322 12 35777777777665 2211 1222334456678888888884
Q ss_pred HhhCCcCCHhHHHHHHHHHHHcCChHHHHHHHhhCC---CCCcccHHHHHHHhcchhhhccCChHHHH--HHHHHHHhCC
Q 009066 93 FLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAP---VKSVVAWTAMISGYMKFGYVENSWAEDGL--KLLRMMIGLG 167 (545)
Q Consensus 93 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~g~~~~A~--~~~~~m~~~~ 167 (545)
+.. ...+......+..+....|+.++|.+....+- .......+.++..+ .+.|...... +=++.+...|
T Consensus 122 ~~~-~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~~p~~cd~l~~~~-----~~~g~lt~~d~w~R~~~al~~~ 195 (644)
T PRK11619 122 SPE-KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKSLPNACDKLFSVW-----QQSGKQDPLAYLERIRLAMKAG 195 (644)
T ss_pred cCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCChHHHHHHHHH-----HHcCCCCHHHHHHHHHHHHHCC
Confidence 433 24566666778888888999877766655542 22355667777776 4333332211 1112222222
Q ss_pred CCCCHHHHHHHHHHHhc------------cCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHH--hcCCHHHHHHHHHhc
Q 009066 168 IRPNASSLSSVLLGCSH------------LSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYC--KCGDLEDACKLFLEI 233 (545)
Q Consensus 168 ~~pd~~t~~~ll~~~~~------------~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~--~~g~~~~A~~~f~~~ 233 (545)
+...-..++..... ..+...+...... .+++...-..++-++. ...+.+.|...+...
T Consensus 196 ---~~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~~~-----~~~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~ 267 (644)
T PRK11619 196 ---NTGLVTYLAKQLPADYQTIASALIKLQNDPNTVETFART-----TGPTDFTRQMAAVAFASVARQDAENARLMIPSL 267 (644)
T ss_pred ---CHHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHHhhc-----cCCChhhHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 11111111111100 0011111111100 1122211111111221 234456777777665
Q ss_pred cCC-------ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCC
Q 009066 234 QRK-------DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIA 306 (545)
Q Consensus 234 ~~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 306 (545)
... ....+..+....+..+...+|...+....... .|......-+..-...++++.+...+..|... ..
T Consensus 268 ~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~--~~ 343 (644)
T PRK11619 268 VRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLNTWLARLPME--AK 343 (644)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHHHHHHhcCHh--hc
Confidence 322 12334444444444333556666655543221 12333333333334667777777777666442 22
Q ss_pred CCHHHHHHHHHHHhHcCCHHHHHHHHHhC
Q 009066 307 AKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335 (545)
Q Consensus 307 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m 335 (545)
....-.--+..++...|+.++|...|+++
T Consensus 344 ~~~rw~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 344 EKDEWRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred cCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 23333334566666677777777777776
No 423
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=39.94 E-value=1.1e+02 Score=31.82 Aligned_cols=132 Identities=17% Similarity=0.088 Sum_probs=86.0
Q ss_pred CCCHHHHHHHHHHHHcc--CcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhH-cCCHHHHHHHHHhC-CCCC--CHhH
Q 009066 270 KPDSITFVALLLACNHA--GLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGR-AGKLVEAVDLIKKM-PFKP--QPAI 343 (545)
Q Consensus 270 ~p~~~t~~~ll~a~~~~--g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m-~~~p--~~~~ 343 (545)
.|+..|..+++.-.... ..-+-|-.++..|.+ .+.|--... .+...|-| .|+...|...+... ...| ..+.
T Consensus 568 ~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~--~~~p~w~~l-n~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~ 644 (886)
T KOG4507|consen 568 MPDDHARKILLSRINNYTIPEEEIGSFLFHAINK--PNAPIWLIL-NEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVP 644 (886)
T ss_pred CchHHHHHHHHHHHhcccCcHHHHHHHHHHHhcC--CCCCeEEEe-ecccceeeecCCcHHHHHHHHHHhccChhhhccc
Confidence 46666666655433322 223444455544432 333322221 23444544 68888898887765 2233 2234
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchHHHHHHHHhhhC
Q 009066 344 FGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKEN 405 (545)
Q Consensus 344 ~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 405 (545)
.-.|.....+.|-...|-.++.+.+.+....+. ++..++++|....+.+.|.+.|+...+.
T Consensus 645 ~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl-~~~~~g~~~l~l~~i~~a~~~~~~a~~~ 705 (886)
T KOG4507|consen 645 LVNLANLLIHYGLHLDATKLLLQALAINSSEPL-TFLSLGNAYLALKNISGALEAFRQALKL 705 (886)
T ss_pred HHHHHHHHHHhhhhccHHHHHHHHHhhcccCch-HHHhcchhHHHHhhhHHHHHHHHHHHhc
Confidence 455667777788888899999999888877667 8999999999999999999999887664
No 424
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=39.86 E-value=1.5e+02 Score=24.08 Aligned_cols=44 Identities=11% Similarity=0.273 Sum_probs=33.1
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHh
Q 009066 157 LKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFK 200 (545)
Q Consensus 157 ~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 200 (545)
.+-++.+..-++.|++......|.+|.+.+++..|.++++-+..
T Consensus 69 rkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 69 RKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34445555667788888888888888888888888888877654
No 425
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=38.41 E-value=1.1e+02 Score=19.78 Aligned_cols=33 Identities=15% Similarity=0.287 Sum_probs=20.0
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 009066 249 AQHGKGEKALRLFDKMKDEGMKPDSITFVALLL 281 (545)
Q Consensus 249 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 281 (545)
.+.|-..++..++++|.+.|+.-+...+..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 345666666666666666666666655555543
No 426
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=38.03 E-value=76 Score=21.89 Aligned_cols=21 Identities=10% Similarity=0.260 Sum_probs=8.8
Q ss_pred HHHHHHccCcHHHHHHHHHHh
Q 009066 279 LLLACNHAGLVDLGIQYFDSM 299 (545)
Q Consensus 279 ll~a~~~~g~~~~a~~~~~~~ 299 (545)
++.++...|++++|.++.+.+
T Consensus 29 vI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 29 VIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 344444444444444444443
No 427
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=37.93 E-value=33 Score=32.81 Aligned_cols=86 Identities=15% Similarity=0.172 Sum_probs=56.7
Q ss_pred cCCHHHHHHHHHhC-CCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchHHHHHH
Q 009066 322 AGKLVEAVDLIKKM-PFKPQ-PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIR 399 (545)
Q Consensus 322 ~g~~~~A~~~~~~m-~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~ 399 (545)
.|.+++|++.|... +..|. ...|..=.+++.+.++...|++-+...++++|+... .|-.-..+-...|+|++|.+.+
T Consensus 127 ~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~-~ykfrg~A~rllg~~e~aa~dl 205 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAK-GYKFRGYAERLLGNWEEAAHDL 205 (377)
T ss_pred CcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCccccc-ccchhhHHHHHhhchHHHHHHH
Confidence 45677777777655 33343 344444556666777777777777777777777666 6666666666777777777777
Q ss_pred HHhhhCCCc
Q 009066 400 LSMKENNVV 408 (545)
Q Consensus 400 ~~m~~~~~~ 408 (545)
....+.++.
T Consensus 206 ~~a~kld~d 214 (377)
T KOG1308|consen 206 ALACKLDYD 214 (377)
T ss_pred HHHHhcccc
Confidence 777666654
No 428
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=37.84 E-value=5e+02 Score=27.73 Aligned_cols=43 Identities=28% Similarity=0.324 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHcCChH------HHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 009066 240 TWNAMISGYAQHGKGE------KALRLFDKMKDEGMKPDSITFVALLLACNH 285 (545)
Q Consensus 240 ~~~~li~~~~~~g~~~------~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 285 (545)
.+|..|....+.|.++ .|.+++++.. +.-|..||..++.+-..
T Consensus 67 ~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all~~~sln 115 (1117)
T COG5108 67 MINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALLCQASLN 115 (1117)
T ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHHHHhhcC
Confidence 3444555555555432 3333443333 44466777776665444
No 429
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=37.57 E-value=1.6e+02 Score=24.26 Aligned_cols=71 Identities=13% Similarity=0.064 Sum_probs=44.7
Q ss_pred CCCHHHHHHHHHHHhHcCCH---HHHHHHHHhC-C-CCC--CHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCc
Q 009066 306 AAKPDHYTCMVDLLGRAGKL---VEAVDLIKKM-P-FKP--QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAA 376 (545)
Q Consensus 306 ~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m-~-~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 376 (545)
.++..+-..+.-++.+..+. .+-+.++++. + -.| ......-|.-++.+.++++.+.++.+.+++.+|++..
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Q 106 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQ 106 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHH
Confidence 44444444555555554443 3344455544 1 223 2233445666888999999999999999999998864
No 430
>PF11525 CopK: Copper resistance protein K; InterPro: IPR021604 CopK is a periplasmic dimeric protein which is strongly up-regulated in the presence of copper, leading to a high periplasmic accumulation []. CopK has two different binding sites for Cu(I), each with a different affinity for the metal. Binding of the first Cu(I) ion induces a conformational change of CopK which involves dissociation of the dimeric apo-protein. Binding of a second Cu(I) further increases the plasticity of the protein. CopK has features that are common with functionally related proteins such as a structure consisting of an all-beta fold and a methionine-rich Cu(I) binding site []. ; PDB: 3N7E_B 3N7D_B 3DSP_A 3DSO_A 2K0Q_A 2KM0_A 2LEL_A.
Probab=37.11 E-value=15 Score=25.67 Aligned_cols=21 Identities=29% Similarity=0.482 Sum_probs=16.4
Q ss_pred ceEEEecCCccccccCCcCCC
Q 009066 521 REIIVRDTTRFHHFKDGTCSC 541 (545)
Q Consensus 521 ~~~~~~d~~~~h~~~~g~~~~ 541 (545)
..|-+.|.+..|+|+||+-+-
T Consensus 8 ksi~LkDGstvyiFKDGKMam 28 (73)
T PF11525_consen 8 KSIPLKDGSTVYIFKDGKMAM 28 (73)
T ss_dssp EEEEBTTSEEEEEETTS-EEE
T ss_pred eeEecCCCCEEEEEcCCceeh
Confidence 356788999999999998653
No 431
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=37.02 E-value=4.4e+02 Score=26.29 Aligned_cols=57 Identities=19% Similarity=0.263 Sum_probs=42.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhccC------CChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 009066 210 LTPLISMYCKCGDLEDACKLFLEIQR------KDVVTWNAMISGYAQHGKGEKALRLFDKMKD 266 (545)
Q Consensus 210 ~~~li~~y~~~g~~~~A~~~f~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 266 (545)
..-+.+-|..||+++.|.+.|.+..+ .-+..|-.+|..-.-.|++.....+..+...
T Consensus 153 ~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 153 LEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 44578889999999999999998653 2334566666666677888877777776654
No 432
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=36.54 E-value=61 Score=30.60 Aligned_cols=39 Identities=26% Similarity=0.250 Sum_probs=26.7
Q ss_pred cHHHHHHHhcchhhhccCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 009066 134 AWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSS 177 (545)
Q Consensus 134 ~~~~li~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ 177 (545)
-||..|... ++.|+.++|+.++++..+.|+.--..||..
T Consensus 259 Yy~~aI~~A-----Vk~gDi~KAL~LldEAe~LG~~~Ar~tFik 297 (303)
T PRK10564 259 YFNQAIKQA-----VKKGDVDKALKLLDEAERLGSTSARSTFIS 297 (303)
T ss_pred HHHHHHHHH-----HHcCCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 356777777 777888888888888877776544444433
No 433
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=36.33 E-value=1.8e+02 Score=29.03 Aligned_cols=60 Identities=12% Similarity=0.132 Sum_probs=33.1
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHhHHhc-C----C-CCCHHHHHHHHHHHhHcCCHHHHHHHHHhC
Q 009066 276 FVALLLACNHAGLVDLGIQYFDSMVNDY-G----I-AAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335 (545)
Q Consensus 276 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~-~----~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 335 (545)
...|++..+-.|++..|+++++.+--.. + + .-.+.+|--+.-+|.-.+++.+|.+.|...
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~i 190 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQI 190 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666777777777765542110 0 0 112334445556666667777777777665
No 434
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=36.24 E-value=7.3e+02 Score=28.63 Aligned_cols=57 Identities=9% Similarity=0.050 Sum_probs=28.2
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCC----HHHHHHHHHHHhHcCCHHHHHHHHHh
Q 009066 276 FVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK----PDHYTCMVDLLGRAGKLVEAVDLIKK 334 (545)
Q Consensus 276 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~ 334 (545)
|..+++.+-..+-.+.+.++-...++. ++++ +.+++++.......|.+-+|.+.+-+
T Consensus 986 Ylkv~rlle~hn~~E~vcQlA~~AIe~--l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~ 1046 (1480)
T KOG4521|consen 986 YLKVVRLLEEHNHAEEVCQLAVKAIEN--LPDDNPSVALISTTVFNHHLDLGHWFQAYKAILR 1046 (1480)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHc
Confidence 444455555555555555555544442 2222 23345555555555555555555444
No 435
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=36.17 E-value=2.2e+02 Score=23.77 Aligned_cols=42 Identities=14% Similarity=0.070 Sum_probs=17.2
Q ss_pred HHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCC
Q 009066 282 ACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGK 324 (545)
Q Consensus 282 a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 324 (545)
.+...+..-.|.++++.+.+. +..-+..|--.-++.+...|-
T Consensus 29 ~L~~~~~~~sAeei~~~l~~~-~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 29 LLLEADGHLSAEELYEELREE-GPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHhcCCCCCHHHHHHHHHHh-CCCCCHhHHHHHHHHHHHCCC
Confidence 333333334455555555443 323333332233344444444
No 436
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=35.76 E-value=1.5e+02 Score=29.95 Aligned_cols=260 Identities=12% Similarity=0.120 Sum_probs=0.0
Q ss_pred hHHHHHHHhhCCCCCcccHHHHHHHhcchhhhccCChHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHhccCcHHHHHH
Q 009066 117 LDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLG---IRPNASSLSSVLLGCSHLSSLQLGKQ 193 (545)
Q Consensus 117 ~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~g~~~~A~~~~~~m~~~~---~~pd~~t~~~ll~~~~~~~~~~~a~~ 193 (545)
++.-.++++.=+..+.+-+...+... -.......--+.+.+..+.| ++|. +..+.+++-.+
T Consensus 12 ~~~r~evl~~w~t~~~vd~~eav~y~-----k~~p~~k~f~~~L~~a~~~g~~l~QPR-----------~G~~~~~e~i~ 75 (480)
T TIGR01503 12 HKIREEVLQQWPTGKDVDLQDAVDYH-----KSIPAHKNFAEKLELAKKKGKTMAQPR-----------AGVALLDEHIE 75 (480)
T ss_pred HHHHHHHhhcCCccccCCHHHHHHHH-----HhCCccccHHHHHHHHHhcCCEeecCC-----------CCCCcHHHHHH
Q ss_pred HHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhccCC-------------ChhhHHHHHHHH-----HHcCChH
Q 009066 194 VHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK-------------DVVTWNAMISGY-----AQHGKGE 255 (545)
Q Consensus 194 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~-------------~~~~~~~li~~~-----~~~g~~~ 255 (545)
+++.+.+.| ...+...-|+.|.+.+++++|..-+++-.+. .+..-..++... .++|-.
T Consensus 76 lL~~l~~~g---~ad~lp~TIDSyTR~n~y~~A~~~l~~s~~~~~s~LNGfP~VnhGv~~~R~l~~~v~~PvQvRHGtp- 151 (480)
T TIGR01503 76 LLRTLQEEG---GADFLPSTIDAYTRQNRYDEAAVGIKESIKAGRSLLNGFPGVNHGVKGCRKVLEAVNLPLQIRHGTP- 151 (480)
T ss_pred HHHHHHHcc---CCCccceeeecccccccHHHHHHHHHhhhhcCcccccCCCcccccHHHHHHHHHhCCCCeeccCCCC-
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHH---HhHHhc---CCCCCHHHHHHHHHHHhHcCCHHHHH
Q 009066 256 KALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFD---SMVNDY---GIAAKPDHYTCMVDLLGRAGKLVEAV 329 (545)
Q Consensus 256 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~---~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~A~ 329 (545)
.+..+++-+...|+...+--..+----|++.=-++++...|+ ++.-.| |++.+.+++..|...+
T Consensus 152 DarlL~e~~~a~G~~a~EGG~ISYnlPYsK~vpLe~si~~WqyvdRL~g~y~e~gv~InrE~FGpLtgtL---------- 221 (480)
T TIGR01503 152 DARLLAEIILAGGFTSFEGGGISYNIPYAKNVTLEKSLEDWQYCDRLVGFYEEQGVHINREPFGPLTGTL---------- 221 (480)
T ss_pred cHHHHHHHHHHcCCCccCCCcceeccccCCCCCHHHHHHHHHHHHHHHHHHHhcCceeccccccCCCCCc----------
Q ss_pred HHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchHHHHHHHHhhhCCCcc
Q 009066 330 DLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVVK 409 (545)
Q Consensus 330 ~~~~~m~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 409 (545)
+.|....--+++.++.-..+ -...+.-.|.+.|+..+=......+++..-.-
T Consensus 222 -------vPPsisiav~ilE~Lla~eq---------------------GVksisvgy~Q~Gn~~QDiaai~aL~~l~~eY 273 (480)
T TIGR01503 222 -------VPPSISNAIGIIEGLLAAEQ---------------------GVKNITVGYGQVGNLTQDIAALRALEEQTNEY 273 (480)
T ss_pred -------cChHHHHHHHHHHHHHHHHc---------------------CCeEEEeccccCCChHHHHHHHHHHHHHHHHH
Q ss_pred CCceeE--EEECCEEEEEecCCCCCCC
Q 009066 410 MPGYSW--IEVGTVVHEFRSGDRVHPE 434 (545)
Q Consensus 410 ~~~~s~--~~~~~~~~~~~~~~~~~~~ 434 (545)
-+...| +.+...+|.++.+......
T Consensus 274 l~~~g~~Dv~i~tV~hqwMG~FP~d~~ 300 (480)
T TIGR01503 274 LKAYGYNDVFVTTVFHQWMGGFPEDES 300 (480)
T ss_pred HHhCCCCceEEEEEeeeccCCCCCChh
No 437
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=35.22 E-value=1.9e+02 Score=21.69 Aligned_cols=62 Identities=16% Similarity=0.060 Sum_probs=40.2
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC--CchhHHHHHHHHHHcCCch-HHHHHHHHh
Q 009066 340 QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPAN--AAGCYVQLANIYAAMKKWD-DVARIRLSM 402 (545)
Q Consensus 340 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~~~l~~~~~~~g~~~-~a~~~~~~m 402 (545)
|....-.+...+...|+++.|+..+-.+++.+|+. .. +-..|+.++...|.-+ -+.+..++|
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~-ar~~ll~~f~~lg~~~plv~~~RRkL 85 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDA-ARKRLLDIFELLGPGDPLVSEYRRKL 85 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCH-HHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccH-HHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 55666777778888888888888888888877654 33 6677888887777754 444444444
No 438
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=34.35 E-value=73 Score=30.05 Aligned_cols=58 Identities=21% Similarity=0.360 Sum_probs=41.8
Q ss_pred HhHcCCHHHHHHHHHhC-CCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCc
Q 009066 319 LGRAGKLVEAVDLIKKM-PFKPQ-PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAA 376 (545)
Q Consensus 319 ~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 376 (545)
..+.|+.++|..+|+.. ...|+ +.+..-+....-.+++.-+|-.+|-+++...|.++.
T Consensus 126 ~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nse 185 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSE 185 (472)
T ss_pred HHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchH
Confidence 45788999999998865 33443 344445555556677888888899888889998876
No 439
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=33.95 E-value=3.8e+02 Score=24.65 Aligned_cols=116 Identities=9% Similarity=-0.013 Sum_probs=62.0
Q ss_pred HHhcCCHHHHHHHHHhccC--CCh-hhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHHccCcHHHH
Q 009066 217 YCKCGDLEDACKLFLEIQR--KDV-VTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL-LACNHAGLVDLG 292 (545)
Q Consensus 217 y~~~g~~~~A~~~f~~~~~--~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~a~~~~g~~~~a 292 (545)
|....+++.|...|.+... |.+ .-|+.-+..+.+..+++.+..--++.++ +.||.+--...+ .+......+++|
T Consensus 20 ~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~ea 97 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDEA 97 (284)
T ss_pred ccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccHH
Confidence 3344567777776666543 444 4466667777777777777766666555 456665433333 344556666777
Q ss_pred HHHHHHhH---HhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHHh
Q 009066 293 IQYFDSMV---NDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKK 334 (545)
Q Consensus 293 ~~~~~~~~---~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 334 (545)
+..+++.. +...+.+.......|.++=-+.=...++.++.++
T Consensus 98 I~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~ 142 (284)
T KOG4642|consen 98 IKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQE 142 (284)
T ss_pred HHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHH
Confidence 76666542 2223344444444444433333333334444433
No 440
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=33.27 E-value=1.9e+02 Score=24.78 Aligned_cols=60 Identities=13% Similarity=0.074 Sum_probs=31.9
Q ss_pred HHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHH
Q 009066 265 KDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLV 326 (545)
Q Consensus 265 ~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 326 (545)
...|++++..-. .++......+..-.|.++++.+.+. +...+..|----++.+.+.|-+.
T Consensus 18 ~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~-~~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 18 AQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREA-EPQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred HHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhh-CCCCCcchHHHHHHHHHHCCCEE
Confidence 344655554433 3333333344555677777777654 44445444444556666666654
No 441
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=32.76 E-value=4.9e+02 Score=25.64 Aligned_cols=89 Identities=13% Similarity=0.153 Sum_probs=49.0
Q ss_pred HHHHHccCcHHHHHHHHHHhHHhcCCCC--CHHHHHHHHHHHh-HcCCHHHHHHHHHhCCC---------CCCHhHHHHH
Q 009066 280 LLACNHAGLVDLGIQYFDSMVNDYGIAA--KPDHYTCMVDLLG-RAGKLVEAVDLIKKMPF---------KPQPAIFGTL 347 (545)
Q Consensus 280 l~a~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~---------~p~~~~~~~l 347 (545)
+..+.+.|-+..|.++.+-+.. +.| |+.....+||.|+ ++++++--+++++.... -|+ ..|...
T Consensus 110 i~~L~~RG~~rTAlE~~KlLls---Ldp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn-~a~S~a 185 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLS---LDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPN-FAFSIA 185 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHh---cCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCcc-HHHHHH
Confidence 3456677777777777766653 333 4445555666664 56666666666555421 122 223333
Q ss_pred HHHHHhcCCH---------------HHHHHHHHHHhcCCCC
Q 009066 348 LSACRVHKRL---------------DLAEFAAMNLFNLNPA 373 (545)
Q Consensus 348 i~~~~~~g~~---------------~~A~~~~~~~~~~~p~ 373 (545)
+.-+. .++. +.|...+.+++..-|.
T Consensus 186 LA~~~-l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 186 LAYFR-LEKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred HHHHH-hcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 33222 3333 6777777777776664
No 442
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=32.65 E-value=2.2e+02 Score=27.49 Aligned_cols=88 Identities=11% Similarity=0.109 Sum_probs=60.8
Q ss_pred HHHHHHHHhHcCCHHHHHHHHHhC----CCCCC--HhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHH
Q 009066 312 YTCMVDLLGRAGKLVEAVDLIKKM----PFKPQ--PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANI 385 (545)
Q Consensus 312 ~~~li~~~~~~g~~~~A~~~~~~m----~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~ 385 (545)
|--=..-|.+..++..|...|.+. --.|| .+.|+.=..+-...|++..|+.-..+++..+|.+.- +|..=+.+
T Consensus 84 ~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~K-a~~R~Akc 162 (390)
T KOG0551|consen 84 YKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLK-AYIRGAKC 162 (390)
T ss_pred HHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhh-hhhhhhHH
Confidence 333445567777888888877665 11233 356666666666778888888888888899998877 77777777
Q ss_pred HHHcCCchHHHHHHH
Q 009066 386 YAAMKKWDDVARIRL 400 (545)
Q Consensus 386 ~~~~g~~~~a~~~~~ 400 (545)
+....++++|...-+
T Consensus 163 ~~eLe~~~~a~nw~e 177 (390)
T KOG0551|consen 163 LLELERFAEAVNWCE 177 (390)
T ss_pred HHHHHHHHHHHHHHh
Confidence 777777665555443
No 443
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=31.77 E-value=2.2e+02 Score=21.18 Aligned_cols=41 Identities=15% Similarity=0.315 Sum_probs=29.4
Q ss_pred HHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHHcCChHHH
Q 009066 217 YCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKA 257 (545)
Q Consensus 217 y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A 257 (545)
.+...+.+.|.++++.++.+...+|..+..++-..|...-|
T Consensus 40 ~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 40 QAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred HcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 34455677788888888888888888888887777655433
No 444
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=31.08 E-value=5e+02 Score=25.19 Aligned_cols=120 Identities=13% Similarity=0.058 Sum_probs=75.8
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc------cCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHH
Q 009066 253 KGEKALRLFDKMKDEGMKPDSITFVALLLACNH------AGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLV 326 (545)
Q Consensus 253 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 326 (545)
.+++++.++++....+. |........|.+|-. .-++..-..+|+.+.. +.|++.+--.-.-+.++..-.+
T Consensus 271 lI~eg~all~rA~~~~~-pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~---~apSPvV~LNRAVAla~~~Gp~ 346 (415)
T COG4941 271 LIDEGLALLDRALASRR-PGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQ---AAPSPVVTLNRAVALAMREGPA 346 (415)
T ss_pred HHHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHH---hCCCCeEeehHHHHHHHhhhHH
Confidence 35688888888887764 788888877766542 2356666666766653 3555543333333344444466
Q ss_pred HHHHHHHhCCCCCCH----hHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCc
Q 009066 327 EAVDLIKKMPFKPQP----AIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAA 376 (545)
Q Consensus 327 ~A~~~~~~m~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 376 (545)
.++.+++.+.-.|-. ..+..=...+.+.|+.++|...|++.+.+.++...
T Consensus 347 agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~ae 400 (415)
T COG4941 347 AGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAE 400 (415)
T ss_pred hHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHH
Confidence 667666666333322 23344455677888899999999888888777654
No 445
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=30.85 E-value=2.7e+02 Score=27.90 Aligned_cols=55 Identities=22% Similarity=0.288 Sum_probs=37.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhccC-----------CChhhHHHHHHHHHHcCChHHHHHHHHHHH
Q 009066 211 TPLISMYCKCGDLEDACKLFLEIQR-----------KDVVTWNAMISGYAQHGKGEKALRLFDKMK 265 (545)
Q Consensus 211 ~~li~~y~~~g~~~~A~~~f~~~~~-----------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 265 (545)
-.|+..++-.||+..|.++++.+.- -.+.++--+.-+|...+++.+|++.|...+
T Consensus 126 igLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 126 IGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467777778888888888776642 134455556667777778888888777654
No 446
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=30.24 E-value=2.8e+02 Score=26.66 Aligned_cols=108 Identities=19% Similarity=0.190 Sum_probs=56.1
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHH--HHHHHHhHcCCHHHHHHH
Q 009066 254 GEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYT--CMVDLLGRAGKLVEAVDL 331 (545)
Q Consensus 254 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~--~li~~~~~~g~~~~A~~~ 331 (545)
..+|..+|++.++.| ..+|+. -+.+.+.|...+| +.++ ..++.+|- .|..+-.+.|++.+|.+.
T Consensus 232 i~~AE~l~k~ALka~----e~~yr~-sqq~qh~~~~~da------~~rR---Dtnvl~YIKRRLAMCARklGrlrEA~K~ 297 (556)
T KOG3807|consen 232 IVDAERLFKQALKAG----ETIYRQ-SQQCQHQSPQHEA------QLRR---DTNVLVYIKRRLAMCARKLGRLREAVKI 297 (556)
T ss_pred HHHHHHHHHHHHHHH----HHHHhh-HHHHhhhccchhh------hhhc---ccchhhHHHHHHHHHHHHhhhHHHHHHH
Confidence 457777777776543 333431 1222333322222 2221 33444442 344444568899999988
Q ss_pred HHhC-CCCCCH---hHHHHHHHHHHhcCCHHHHHHHHHHHhcC-CCCCC
Q 009066 332 IKKM-PFKPQP---AIFGTLLSACRVHKRLDLAEFAAMNLFNL-NPANA 375 (545)
Q Consensus 332 ~~~m-~~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~p~~~ 375 (545)
|+.+ ...|-. .+...|+.++....-+.....++-+.-++ .|...
T Consensus 298 ~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDdislPkSA 346 (556)
T KOG3807|consen 298 MRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDISLPKSA 346 (556)
T ss_pred HHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcchH
Confidence 8877 222322 23456777776666566555555555443 35443
No 447
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=30.04 E-value=3e+02 Score=22.25 Aligned_cols=42 Identities=17% Similarity=0.272 Sum_probs=23.9
Q ss_pred HHHHHHHHhHHhcCCC-CCHHHHHHHHHHHhHcCCHHHHHHHHH
Q 009066 291 LGIQYFDSMVNDYGIA-AKPDHYTCMVDLLGRAGKLVEAVDLIK 333 (545)
Q Consensus 291 ~a~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~ 333 (545)
.+.++|..|..+ |+- ..+..|..-...+...|++++|.++|+
T Consensus 81 ~~~~if~~l~~~-~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSK-GIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHH-TTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHc-CccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 556666666554 332 334556666666666666666666664
No 448
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=30.01 E-value=1.7e+02 Score=28.78 Aligned_cols=61 Identities=15% Similarity=0.033 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHhcCCHH---HHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchHHHHHHHHh
Q 009066 341 PAIFGTLLSACRVHKRLD---LAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSM 402 (545)
Q Consensus 341 ~~~~~~li~~~~~~g~~~---~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 402 (545)
...-..++..+...++.. +|..+++..+...|.+.. .-..|+..|...|-.+.|.+.|..+
T Consensus 180 lla~~~Ll~~~~~~~~~~~l~~Ai~lLE~~l~~s~~n~~-~~LlLvrlY~~LG~~~~A~~~~~~L 243 (365)
T PF09797_consen 180 LLAAHSLLDLYSKTKDSEYLLQAIALLEHALKKSPHNYQ-LKLLLVRLYSLLGAGSLALEHYESL 243 (365)
T ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHcCCCcHH-HHHHHHHHHHHcCCHHHHHHHHHhc
No 449
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=29.41 E-value=6.5e+02 Score=25.95 Aligned_cols=104 Identities=13% Similarity=0.141 Sum_probs=59.8
Q ss_pred HHHHhccCCChhh-HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--ccCcHHHHHHHHHHhHHhcC
Q 009066 228 KLFLEIQRKDVVT-WNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN--HAGLVDLGIQYFDSMVNDYG 304 (545)
Q Consensus 228 ~~f~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~--~~g~~~~a~~~~~~~~~~~~ 304 (545)
..+..+..++..+ -+..+.-+.+.|-+.+|...|..+... .+|+...|..++..=. .+-++.-++.+++.+...+|
T Consensus 449 ~a~~s~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg 527 (568)
T KOG2396|consen 449 SALLSVIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG 527 (568)
T ss_pred HHHHHhcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC
Confidence 3444444454443 234455555666666666666666654 3445555555543211 11226777888888888777
Q ss_pred CCCCHHHHHHHHHHHhHcCCHHHHHHHHHh
Q 009066 305 IAAKPDHYTCMVDLLGRAGKLVEAVDLIKK 334 (545)
Q Consensus 305 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 334 (545)
.|+..|...+..=...|..+.+-.++.+
T Consensus 528 --~d~~lw~~y~~~e~~~g~~en~~~~~~r 555 (568)
T KOG2396|consen 528 --ADSDLWMDYMKEELPLGRPENCGQIYWR 555 (568)
T ss_pred --CChHHHHHHHHhhccCCCcccccHHHHH
Confidence 5666666666555567777666665544
No 450
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=29.34 E-value=2e+02 Score=19.91 Aligned_cols=17 Identities=12% Similarity=0.149 Sum_probs=8.8
Q ss_pred HcCChHHHHHHHHHHHH
Q 009066 250 QHGKGEKALRLFDKMKD 266 (545)
Q Consensus 250 ~~g~~~~A~~~~~~m~~ 266 (545)
..|++-+|-++++++-.
T Consensus 11 n~g~f~EaHEvlE~~W~ 27 (62)
T PF03745_consen 11 NAGDFFEAHEVLEELWK 27 (62)
T ss_dssp HTT-HHHHHHHHHHHCC
T ss_pred cCCCHHHhHHHHHHHHH
Confidence 35555566666555543
No 451
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.29 E-value=8.5e+02 Score=27.31 Aligned_cols=36 Identities=14% Similarity=0.072 Sum_probs=20.1
Q ss_pred ccCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q 009066 184 HLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCK 219 (545)
Q Consensus 184 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~ 219 (545)
.....+.+..+++.+....-.++....+.++..|+.
T Consensus 603 ~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 603 KSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred hhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 344555566666666555444555555556655553
No 452
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=29.27 E-value=97 Score=23.35 Aligned_cols=29 Identities=17% Similarity=0.309 Sum_probs=15.2
Q ss_pred cCChHHHHHHHhhCCCCCcccHHHHHHHh
Q 009066 114 CGQLDKAVELFKVAPVKSVVAWTAMISGY 142 (545)
Q Consensus 114 ~g~~~~A~~~f~~~~~~~~~~~~~li~~~ 142 (545)
.-+.+++.++++.++.++..+|..+..++
T Consensus 47 ~t~~~k~~~Lld~L~~RG~~AF~~F~~aL 75 (90)
T cd08332 47 PTSFSQNVALLNLLPKRGPRAFSAFCEAL 75 (90)
T ss_pred CCcHHHHHHHHHHHHHhChhHHHHHHHHH
Confidence 34445555555555555555555555554
No 453
>PF08967 DUF1884: Domain of unknown function (DUF1884); InterPro: IPR014418 This group represents an uncharacterised conserved protein.; PDB: 2PK8_A.
Probab=29.23 E-value=74 Score=23.23 Aligned_cols=27 Identities=30% Similarity=0.525 Sum_probs=18.0
Q ss_pred hHHHHHHHHHHHHHHHHcCcccCCccc
Q 009066 435 LVSIHEKLKELEKRMKLAGYVPDLEFA 461 (545)
Q Consensus 435 ~~~~~~~l~~~~~~m~~~g~~pd~~~~ 461 (545)
..++...+++..++++..|+.||...+
T Consensus 7 li~il~~ie~~inELk~dG~ePDivL~ 33 (85)
T PF08967_consen 7 LIRILELIEEKINELKEDGFEPDIVLV 33 (85)
T ss_dssp HHHHHHHHHHHHHHHHHTT----EEEE
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCEEEE
Confidence 456777788889999999999996654
No 454
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.09 E-value=5.7e+02 Score=27.21 Aligned_cols=85 Identities=15% Similarity=0.094 Sum_probs=64.7
Q ss_pred HhHcCCHHHHHHHHHh-CCCCC-C------HhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcC
Q 009066 319 LGRAGKLVEAVDLIKK-MPFKP-Q------PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMK 390 (545)
Q Consensus 319 ~~~~g~~~~A~~~~~~-m~~~p-~------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g 390 (545)
..+..++..+.+.|.. |..-| | ....+.|--.|....+.+.|.++++++.+.+|.++. +-..+..+....|
T Consensus 364 ~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l-~q~~~~~~~~~E~ 442 (872)
T KOG4814|consen 364 LFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPL-CQLLMLQSFLAED 442 (872)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHH-HHHHHHHHHHHhc
Confidence 3456677777777754 32111 1 235667777788889999999999999999999887 7778888889999
Q ss_pred CchHHHHHHHHhhh
Q 009066 391 KWDDVARIRLSMKE 404 (545)
Q Consensus 391 ~~~~a~~~~~~m~~ 404 (545)
.-++|+........
T Consensus 443 ~Se~AL~~~~~~~s 456 (872)
T KOG4814|consen 443 KSEEALTCLQKIKS 456 (872)
T ss_pred chHHHHHHHHHHHh
Confidence 99999998877654
No 455
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=29.04 E-value=92 Score=28.20 Aligned_cols=55 Identities=16% Similarity=0.093 Sum_probs=49.5
Q ss_pred HHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchHHHHHHHHhhhCC
Q 009066 351 CRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENN 406 (545)
Q Consensus 351 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 406 (545)
..+.++.+.|.+++.+++++-|.... .|..+...-.++|+++.|.+.+++..+-+
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~-gwfR~g~~~ekag~~daAa~a~~~~L~ld 59 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAA-GWFRLGEYTEKAGEFDAAAAAYEEVLELD 59 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhh-hhhhcchhhhhcccHHHHHHHHHHHHcCC
Confidence 45678999999999999999999988 99999999999999999999999887643
No 456
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=28.87 E-value=4.6e+02 Score=24.06 Aligned_cols=90 Identities=18% Similarity=0.276 Sum_probs=50.7
Q ss_pred HhccCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHh----------------ccCCChhhHHHHH
Q 009066 182 CSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLE----------------IQRKDVVTWNAMI 245 (545)
Q Consensus 182 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~----------------~~~~~~~~~~~li 245 (545)
|.+..+.+--.++.+-....+++-+..-..+++ +...|++..|..-++. ..+|.+.....|+
T Consensus 169 ysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml 246 (333)
T KOG0991|consen 169 YSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKML 246 (333)
T ss_pred hcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHH
Confidence 444444444444444444444444443333333 3345666666555443 3345566666666
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCHH
Q 009066 246 SGYAQHGKGEKALRLFDKMKDEGMKPDSI 274 (545)
Q Consensus 246 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 274 (545)
..+. .+++++|.+.+.++.+.|..|...
T Consensus 247 ~~~~-~~~~~~A~~il~~lw~lgysp~Di 274 (333)
T KOG0991|consen 247 QACL-KRNIDEALKILAELWKLGYSPEDI 274 (333)
T ss_pred HHHH-hccHHHHHHHHHHHHHcCCCHHHH
Confidence 6544 467888888888888888777543
No 457
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=28.74 E-value=6e+02 Score=25.38 Aligned_cols=60 Identities=17% Similarity=0.158 Sum_probs=40.0
Q ss_pred HhHHHHHHHHHHHcCChHHHHHHHhhCCCC------CcccHHHHHHHhcchhhhccCChHHHHHHHHHHHh
Q 009066 101 SVSWSAMISGYIECGQLDKAVELFKVAPVK------SVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIG 165 (545)
Q Consensus 101 ~~~~~~li~~~~~~g~~~~A~~~f~~~~~~------~~~~~~~li~~~~~~g~~~~g~~~~A~~~~~~m~~ 165 (545)
...+.-+.+.|..||+++.|.+.+.+...- -+..|-.+|..- .-.|+|......-.+..+
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VS-----I~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVS-----IYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHH-----HhhcchhhhhhHHHHHHh
Confidence 346778889999999999999999885421 123444455444 556667666666555544
No 458
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=28.13 E-value=3.2e+02 Score=22.02 Aligned_cols=20 Identities=15% Similarity=0.101 Sum_probs=10.8
Q ss_pred HHHHHHHHHHhHcCCHHHHH
Q 009066 310 DHYTCMVDLLGRAGKLVEAV 329 (545)
Q Consensus 310 ~~~~~li~~~~~~g~~~~A~ 329 (545)
..+..|..++.+.|++++++
T Consensus 56 ~chA~Ls~A~~~Lgry~e~L 75 (144)
T PF12968_consen 56 FCHAGLSGALAGLGRYDECL 75 (144)
T ss_dssp HHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHhhccHHHHH
Confidence 34455666666666666544
No 459
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=27.78 E-value=5.2e+02 Score=25.85 Aligned_cols=60 Identities=20% Similarity=0.099 Sum_probs=33.6
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHhC--CCCCCcccHHHHHHHHHhcCCHHHHHHHHHhcc
Q 009066 175 LSSVLLGCSHLSSLQLGKQVHQLVFKS--PLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ 234 (545)
Q Consensus 175 ~~~ll~~~~~~~~~~~a~~~~~~~~~~--g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~ 234 (545)
...+++.+.-.|+.....++.+.+.+. |-.|...+---+.-+|.-.|++.+|.++|-.+.
T Consensus 238 L~GLlR~H~lLgDhQat~q~idi~pk~iy~t~p~c~VTY~VGFayLmmrryadai~~F~niL 299 (525)
T KOG3677|consen 238 LLGLLRMHILLGDHQATSQILDIMPKEIYGTEPMCRVTYQVGFAYLMMRRYADAIRVFLNIL 299 (525)
T ss_pred HHHHHHHHHHhhhhHhhhhhhhcCchhhcCcccceeEeeehhHHHHHHHHHHHHHHHHHHHH
Confidence 444555666667766655666655442 333332222335666667777777777776543
No 460
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=27.78 E-value=1.9e+02 Score=20.23 Aligned_cols=48 Identities=17% Similarity=0.093 Sum_probs=28.9
Q ss_pred CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 009066 235 RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC 283 (545)
Q Consensus 235 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 283 (545)
.+....++.++..++...-.++++..+.++...|. .+..+|.--++.+
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~L 52 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSL 52 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHH
Confidence 34555667777777777777777777777777664 3444554444433
No 461
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=27.60 E-value=2.4e+02 Score=25.93 Aligned_cols=21 Identities=24% Similarity=0.309 Sum_probs=10.0
Q ss_pred HHHHHhHcCCHHHHHHHHHhC
Q 009066 315 MVDLLGRAGKLVEAVDLIKKM 335 (545)
Q Consensus 315 li~~~~~~g~~~~A~~~~~~m 335 (545)
|...|.+.|++++|.++|+.+
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 444444445555554444444
No 462
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=27.31 E-value=99 Score=22.27 Aligned_cols=39 Identities=13% Similarity=0.137 Sum_probs=27.4
Q ss_pred hccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC
Q 009066 148 VENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLS 186 (545)
Q Consensus 148 ~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~ 186 (545)
+..++.+.+.+++++....|..|.......+..+....|
T Consensus 12 l~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~iG 50 (79)
T PF02607_consen 12 LLAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEIG 50 (79)
T ss_dssp HHTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 557788889999999988887777766666665554433
No 463
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=27.25 E-value=1e+02 Score=29.10 Aligned_cols=53 Identities=19% Similarity=0.300 Sum_probs=35.5
Q ss_pred HccCcHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHhHcCCHHHHHHHHHhC-CCCC
Q 009066 284 NHAGLVDLGIQYFDSMVNDYGIAA-KPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKP 339 (545)
Q Consensus 284 ~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p 339 (545)
.+.|+.++|..+|+.... +.| ++....-+....-...++-+|-.+|-+. .+.|
T Consensus 127 ~~~Gk~ekA~~lfeHAla---laP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP 181 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALA---LAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISP 181 (472)
T ss_pred HhccchHHHHHHHHHHHh---cCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCC
Confidence 478999999999998874 344 4555555555555556677777776655 4445
No 464
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=27.19 E-value=8.4e+02 Score=26.56 Aligned_cols=235 Identities=9% Similarity=-0.045 Sum_probs=0.0
Q ss_pred hhhhccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHH
Q 009066 145 FGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 224 (545)
Q Consensus 145 ~g~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~ 224 (545)
.|....|....+.+.+.+.++..-.+....=.++.-..+..|.-+ +++|+.+...-...+..+..+-.-+.+-++--.
T Consensus 403 lGLIhA~hG~~~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~mGSa~--~eiYe~lKevLy~D~AvsGEAAgi~MGl~mlGt 480 (929)
T KOG2062|consen 403 LGLIHANHGRGITDYLLQQLKTAENEVVRHGACLGLGLAGMGSAN--EEIYEKLKEVLYNDSAVSGEAAGIAMGLLMLGT 480 (929)
T ss_pred hhccccCcCccHHHHHHHHHHhccchhhhhhhhhhccchhccccc--HHHHHHHHHHHhccchhhhhHHHHhhhhHhhCc
Q ss_pred HHHHHHHhccC-------CChhhHHHHHHHHHHcCChHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHccCcHHHHHHHH
Q 009066 225 DACKLFLEIQR-------KDVVTWNAMISGYAQHGKGEKALRLFDKMKD-EGMKPDSITFVALLLACNHAGLVDLGIQYF 296 (545)
Q Consensus 225 ~A~~~f~~~~~-------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 296 (545)
.-.+.+++|.. ..+.-=-.+.-++..-|+.++|-.+.++|.. .....-..-..++..+|+..|+....++++
T Consensus 481 ~~~eaiedm~~Ya~ETQHeki~RGl~vGiaL~~ygrqe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgnnkair~lL 560 (929)
T KOG2062|consen 481 ANQEAIEDMLTYAQETQHEKIIRGLAVGIALVVYGRQEDADPLIKELLRDKDPILRYGGMYTLALAYVGTGNNKAIRRLL 560 (929)
T ss_pred CcHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHhhhhhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCchhhHHHhh
Q ss_pred HHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhC--CCCCCHhHHHHHHHHHHhcCCHH-HHHHHHHHHhcCCCC
Q 009066 297 DSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM--PFKPQPAIFGTLLSACRVHKRLD-LAEFAAMNLFNLNPA 373 (545)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~li~~~~~~g~~~-~A~~~~~~~~~~~p~ 373 (545)
.-.+. ....|+.-+..+.-++.-..+.+....+.+-+ ...|.+..=.++.-+.+-.|--. +|..+++-|.. +|.
T Consensus 561 h~aVs--D~nDDVrRaAVialGFVl~~dp~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~eAi~lLepl~~-D~~ 637 (929)
T KOG2062|consen 561 HVAVS--DVNDDVRRAAVIALGFVLFRDPEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKEAINLLEPLTS-DPV 637 (929)
T ss_pred ccccc--ccchHHHHHHHHHheeeEecChhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHHHHHHHhhhhc-ChH
Q ss_pred CCchhHHHHHHH
Q 009066 374 NAAGCYVQLANI 385 (545)
Q Consensus 374 ~~~~~~~~l~~~ 385 (545)
+.. -.-.|+..
T Consensus 638 ~fV-RQgAlIa~ 648 (929)
T KOG2062|consen 638 DFV-RQGALIAL 648 (929)
T ss_pred HHH-HHHHHHHH
No 465
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=27.05 E-value=5.7e+02 Score=26.36 Aligned_cols=26 Identities=12% Similarity=-0.058 Sum_probs=15.2
Q ss_pred hccCChHHHHHHHHHHHhCCCCCCHH
Q 009066 148 VENSWAEDGLKLLRMMIGLGIRPNAS 173 (545)
Q Consensus 148 ~~~g~~~~A~~~~~~m~~~~~~pd~~ 173 (545)
...+++++|+.++.+|...|..|...
T Consensus 254 i~~~d~~~Al~~l~~ll~~Gedp~~i 279 (472)
T PRK14962 254 IFNGDVKRVFTVLDDVYYSGKDYEVL 279 (472)
T ss_pred HHcCCHHHHHHHHHHHHHcCCCHHHH
Confidence 34566666666666666666555443
No 466
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=27.01 E-value=4.2e+02 Score=23.23 Aligned_cols=20 Identities=20% Similarity=0.431 Sum_probs=11.6
Q ss_pred HHHHhHcCCHHHHHHHHHhC
Q 009066 316 VDLLGRAGKLVEAVDLIKKM 335 (545)
Q Consensus 316 i~~~~~~g~~~~A~~~~~~m 335 (545)
+-.|.+.|.+++|.+++++.
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~ 137 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRL 137 (200)
T ss_pred HHHHHhcCchHHHHHHHHHH
Confidence 34455666666666666655
No 467
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=26.87 E-value=4.6e+02 Score=23.58 Aligned_cols=48 Identities=21% Similarity=0.369 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHcCCCC----CHHHHHHHH-HHHHccCcHHHHHHHHHHhHHh
Q 009066 255 EKALRLFDKMKDEGMKP----DSITFVALL-LACNHAGLVDLGIQYFDSMVND 302 (545)
Q Consensus 255 ~~A~~~~~~m~~~g~~p----~~~t~~~ll-~a~~~~g~~~~a~~~~~~~~~~ 302 (545)
..|++.|.+..+..-.| +..+..-|+ ....+.|+.++|.+.|..+...
T Consensus 142 ~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 142 RKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 35666666665432221 223333333 4455677777777777777654
No 468
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=26.68 E-value=3.5e+02 Score=28.82 Aligned_cols=47 Identities=11% Similarity=0.048 Sum_probs=25.6
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHccCcH
Q 009066 243 AMISGYAQHGKGEKALRLFDKMKDEG--MKPDSITFVALLLACNHAGLV 289 (545)
Q Consensus 243 ~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~t~~~ll~a~~~~g~~ 289 (545)
++..+|..+|++..+.++++.....+ -+.=...++..|+...+.|.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf 81 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSF 81 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCc
Confidence 56666666666666666666665421 111123455555555565554
No 469
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=26.46 E-value=4.9e+02 Score=24.66 Aligned_cols=52 Identities=15% Similarity=0.224 Sum_probs=31.4
Q ss_pred HHHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 009066 213 LISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKD 266 (545)
Q Consensus 213 li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 266 (545)
++..+.+.+++.+..+.+..+. .+..-...+..+...|++..|++++.+...
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~--~v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIK--TVQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 4445555555555555555442 334445556677778888888888877654
No 470
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=26.07 E-value=6.9e+02 Score=25.18 Aligned_cols=44 Identities=5% Similarity=-0.131 Sum_probs=20.4
Q ss_pred cccHHHHHHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHH
Q 009066 207 TTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQ 250 (545)
Q Consensus 207 ~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~ 250 (545)
..+....+.++.+.+..+....+..-+..++...-.+.+.++..
T Consensus 100 ~~vr~aaa~ALg~i~~~~a~~~L~~~L~~~~p~vR~aal~al~~ 143 (410)
T TIGR02270 100 EGLCAGIQAALGWLGGRQAEPWLEPLLAASEPPGRAIGLAALGA 143 (410)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHhcCCChHHHHHHHHHHHh
Confidence 33444555555555554444444444444444444344444443
No 471
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=25.73 E-value=9.2e+02 Score=26.52 Aligned_cols=144 Identities=15% Similarity=0.080 Sum_probs=0.0
Q ss_pred HHHHHHHhhCCcCCHhHHHHHHHHHHHc----------CChHHHHHHHhh---CCCCCcccHHHHHHHhcchhhhccCCh
Q 009066 87 AKARDLFLAMPEKNSVSWSAMISGYIEC----------GQLDKAVELFKV---APVKSVVAWTAMISGYMKFGYVENSWA 153 (545)
Q Consensus 87 ~~a~~~~~~~~~~~~~~~~~li~~~~~~----------g~~~~A~~~f~~---~~~~~~~~~~~li~~~~~~g~~~~g~~ 153 (545)
+++++.+......|....-.++...... =..+.+.+.+.. ...++-...-..|+++.+. .+.+++
T Consensus 197 deaL~~La~~s~GD~R~lln~Le~a~~~~~~~~~~~i~It~~~~~e~l~~~~~~ydk~gd~hyd~Isa~~ks--irgsD~ 274 (725)
T PRK13341 197 PEAEKHLVDVANGDARSLLNALELAVESTPPDEDGLIDITLAIAEESIQQRAVLYDKEGDAHFDTISAFIKS--LRGSDP 274 (725)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhcccCCCCceeccHHHHHHHHHHhhhhcccCCCCCHHHHHHHHHH--HhcCCH
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC-----cHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHH
Q 009066 154 EDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLS-----SLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK 228 (545)
Q Consensus 154 ~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~-----~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~ 228 (545)
+.|+..+.+|.+.|..|....-..++.+....| ....+...+......|++--.....-++-.++.+-+-..+ .
T Consensus 275 daAl~~la~ml~~Gedp~~I~Rrl~~~asEdigladp~al~~~~~~~~a~~~~g~pE~~~~laq~~~~la~apKSns~-~ 353 (725)
T PRK13341 275 DAALYWLARMVEAGEDPRFIFRRMLIAASEDVGLADPQALVVVEACAAAFERVGLPEGLYPLAQAALYLATAPKSNSV-L 353 (725)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhCCcchhhHHHHHHHHHHcCCCccHH-H
Q ss_pred HHHhc
Q 009066 229 LFLEI 233 (545)
Q Consensus 229 ~f~~~ 233 (545)
-++..
T Consensus 354 a~~~a 358 (725)
T PRK13341 354 GFFDA 358 (725)
T ss_pred HHHHH
No 472
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=25.61 E-value=4.7e+02 Score=23.10 Aligned_cols=104 Identities=18% Similarity=0.129 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhC-----CCCCCHhHHHHHHH-HHHhcCCHH--HHH
Q 009066 290 DLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-----PFKPQPAIFGTLLS-ACRVHKRLD--LAE 361 (545)
Q Consensus 290 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-----~~~p~~~~~~~li~-~~~~~g~~~--~A~ 361 (545)
+++.++-.++.+ ++..+-.....|++++|..-++++ .++.-...|..+.. +++.++.-+ +|.
T Consensus 20 EE~l~lsRei~r----------~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~ 89 (204)
T COG2178 20 EEALKLSREIVR----------LSGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEAT 89 (204)
T ss_pred HHHHHHHHHHHH----------HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHH
Q ss_pred HHHHHHhc--------CCCCCCchhHHHHHHH----------HHHcCCchHHHHHHHHhhh
Q 009066 362 FAAMNLFN--------LNPANAAGCYVQLANI----------YAAMKKWDDVARIRLSMKE 404 (545)
Q Consensus 362 ~~~~~~~~--------~~p~~~~~~~~~l~~~----------~~~~g~~~~a~~~~~~m~~ 404 (545)
.++.-+.+ ++.++.. ....++++ ..+.|+++.|.++++-|.+
T Consensus 90 ~l~~~l~~~~~ps~~EL~V~~~~-YilGl~D~vGELrR~~le~l~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 90 LLYSILKDGRLPSPEELGVPPIA-YILGLADAVGELRRHVLELLRKGSFEEAERFLKFMEK 149 (204)
T ss_pred HHHHHHhcCCCCCHHHcCCCHHH-HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
No 473
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=25.39 E-value=2.7e+02 Score=20.21 Aligned_cols=80 Identities=19% Similarity=0.137 Sum_probs=35.9
Q ss_pred HHhCCCHHHHHHHHhhCCcCCHhHHHHHHHHHHHcCChHHHHHHHhhCCCCCc---ccHHHHHHHhcchhhhccCChHHH
Q 009066 80 FVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSV---VAWTAMISGYMKFGYVENSWAEDG 156 (545)
Q Consensus 80 ~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~g~~~~g~~~~A 156 (545)
.++.|+++-...+++.-...+. .+..+...+..|+.+-+..+++.-...+. .-++.|..+. ..|.
T Consensus 4 A~~~~~~~~~~~ll~~~~~~~~--~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~------~~~~---- 71 (89)
T PF12796_consen 4 AAQNGNLEILKFLLEKGADINL--GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAA------ENGN---- 71 (89)
T ss_dssp HHHTTTHHHHHHHHHTTSTTTS--SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHH------HTTH----
T ss_pred HHHcCCHHHHHHHHHCcCCCCC--CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHH------HcCC----
Confidence 3455555555555553222221 22344455566666666666654433322 2344444443 2332
Q ss_pred HHHHHHHHhCCCCCC
Q 009066 157 LKLLRMMIGLGIRPN 171 (545)
Q Consensus 157 ~~~~~~m~~~~~~pd 171 (545)
.++++.+.+.|..|+
T Consensus 72 ~~~~~~Ll~~g~~~~ 86 (89)
T PF12796_consen 72 LEIVKLLLEHGADVN 86 (89)
T ss_dssp HHHHHHHHHTTT-TT
T ss_pred HHHHHHHHHcCCCCC
Confidence 334455555555544
No 474
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=24.79 E-value=2e+02 Score=22.33 Aligned_cols=22 Identities=23% Similarity=0.573 Sum_probs=9.8
Q ss_pred HHHHHHhcCCHHHHHHHHHhcc
Q 009066 213 LISMYCKCGDLEDACKLFLEIQ 234 (545)
Q Consensus 213 li~~y~~~g~~~~A~~~f~~~~ 234 (545)
++.-|...|+.++|...+.++.
T Consensus 8 ~l~ey~~~~d~~ea~~~l~el~ 29 (113)
T PF02847_consen 8 ILMEYFSSGDVDEAVECLKELK 29 (113)
T ss_dssp HHHHHHHHT-HHHHHHHHHHTT
T ss_pred HHHHHhcCCCHHHHHHHHHHhC
Confidence 3344444455555555554443
No 475
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=24.73 E-value=1.8e+02 Score=22.76 Aligned_cols=45 Identities=16% Similarity=0.221 Sum_probs=26.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCc
Q 009066 244 MISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGL 288 (545)
Q Consensus 244 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 288 (545)
++..+...+..-.|.++++++.+.+..++..|....|..+...|-
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gl 50 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGL 50 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC
Confidence 344444445555666777777666666666666666666555553
No 476
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=24.67 E-value=3.1e+02 Score=20.62 Aligned_cols=18 Identities=11% Similarity=0.222 Sum_probs=8.6
Q ss_pred HHccCcHHHHHHHHHHhH
Q 009066 283 CNHAGLVDLGIQYFDSMV 300 (545)
Q Consensus 283 ~~~~g~~~~a~~~~~~~~ 300 (545)
....|..++|.+.+++.+
T Consensus 51 ~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 51 HRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHHhCCHHHHHHHHHHHH
Confidence 334455555555554443
No 477
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=24.56 E-value=8.5e+02 Score=25.73 Aligned_cols=47 Identities=4% Similarity=0.013 Sum_probs=22.4
Q ss_pred HhHHHHHHHHHHHcCChHHHHHHHhhCCCCC-cccHHHHHHHhcchhhhccCChH
Q 009066 101 SVSWSAMISGYIECGQLDKAVELFKVAPVKS-VVAWTAMISGYMKFGYVENSWAE 154 (545)
Q Consensus 101 ~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~-~~~~~~li~~~~~~g~~~~g~~~ 154 (545)
...+..|+..+..+. .++-.++++++.. . ...|..++++. ...|-..
T Consensus 310 ~~~f~~lv~~lR~~~-~e~l~~l~~~~~~-~~~~~r~~~~Dal-----~~~GT~~ 357 (574)
T smart00638 310 AAKFLRLVRLLRTLS-EEQLEQLWRQLYE-KKKKARRIFLDAV-----AQAGTPP 357 (574)
T ss_pred HHHHHHHHHHHHhCC-HHHHHHHHHHHHh-CCHHHHHHHHHHH-----HhcCCHH
Confidence 334444444443332 3444444444433 2 45566666666 5555443
No 478
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=24.32 E-value=1.9e+02 Score=27.51 Aligned_cols=76 Identities=5% Similarity=0.062 Sum_probs=46.4
Q ss_pred CCCCHHHHHHHHHHHhHcCCHHHHHHHHHhC-CCCC-CHhHHHH-HHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHH
Q 009066 305 IAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKP-QPAIFGT-LLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQ 381 (545)
Q Consensus 305 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~-li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~ 381 (545)
+..|+..|...+.--.+.|.+.+...+|.+. ...| |+..|-. --.-+..+++++.+..+|.+.+.++|+.+. .|..
T Consensus 103 ff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~-iw~e 181 (435)
T COG5191 103 FFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPR-IWIE 181 (435)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCch-HHHH
Confidence 3445555555554444555556666666555 2234 4555543 223456788888888888888888888876 5543
No 479
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=24.15 E-value=3.1e+02 Score=22.79 Aligned_cols=17 Identities=0% Similarity=-0.189 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHhCCCCC
Q 009066 189 QLGKQVHQLVFKSPLCK 205 (545)
Q Consensus 189 ~~a~~~~~~~~~~g~~~ 205 (545)
-.|.++|..+.+.+...
T Consensus 37 ~sAeei~~~l~~~~p~i 53 (145)
T COG0735 37 LSAEELYEELREEGPGI 53 (145)
T ss_pred CCHHHHHHHHHHhCCCC
Confidence 44444444444444333
No 480
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=24.14 E-value=6.2e+02 Score=23.96 Aligned_cols=149 Identities=17% Similarity=0.096 Sum_probs=82.9
Q ss_pred hccCChHHHHHHHHHHHhCCCCCCHH-------HHHHHHHHHhccCcHHHHHHHHHH----HHhCCCCCCcccHHHHHHH
Q 009066 148 VENSWAEDGLKLLRMMIGLGIRPNAS-------SLSSVLLGCSHLSSLQLGKQVHQL----VFKSPLCKDTTALTPLISM 216 (545)
Q Consensus 148 ~~~g~~~~A~~~~~~m~~~~~~pd~~-------t~~~ll~~~~~~~~~~~a~~~~~~----~~~~g~~~~~~~~~~li~~ 216 (545)
++.++.++|+..+.+....|+..|.. |...+...|...|+...-.+.... |....-+....+..+|++.
T Consensus 14 v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~KiirtLiek 93 (421)
T COG5159 14 VKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRTLIEK 93 (421)
T ss_pred hhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHHHHHh
Confidence 66778888888888888887766654 344566666666665544333322 2222222334455566666
Q ss_pred HHhcC-CHHHHHHHHHhccC-----CC----hhhHHHHHHHHHHcCChHHHHHHHHH----HHHcCCCCCHHHHHHHH-H
Q 009066 217 YCKCG-DLEDACKLFLEIQR-----KD----VVTWNAMISGYAQHGKGEKALRLFDK----MKDEGMKPDSITFVALL-L 281 (545)
Q Consensus 217 y~~~g-~~~~A~~~f~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~----m~~~g~~p~~~t~~~ll-~ 281 (545)
+.... .++.-..+.....+ +- ...=.-+|..+.+.|.+.+|+.+... +.+..-+|+..+...+= .
T Consensus 94 f~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESK 173 (421)
T COG5159 94 FPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESK 173 (421)
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHH
Confidence 54432 34555555444332 11 11223478889999999999987654 44445566665544332 2
Q ss_pred HHHccCcHHHHHHHH
Q 009066 282 ACNHAGLVDLGIQYF 296 (545)
Q Consensus 282 a~~~~g~~~~a~~~~ 296 (545)
+|-...++.++..-+
T Consensus 174 vyh~irnv~KskaSL 188 (421)
T COG5159 174 VYHEIRNVSKSKASL 188 (421)
T ss_pred HHHHHHhhhhhhhHH
Confidence 444444444444433
No 481
>cd08323 CARD_APAF1 Caspase activation and recruitment domain similar to that found in Apoptotic Protease-Activating Factor 1. Caspase activation and recruitment domain (CARD) similar to that found in apoptotic protease-activating factor 1 (APAF-1), which is an activator of caspase-9. APAF-1 contains WD-40 repeats, a CARD, and an ATPase domain. Upon stimulation, APAF-1, together with caspase-9, forms the heptameric 'apoptosome', which leads to the processing and activation of caspase-9, starting a caspase cascade which leads to apoptosis. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effect
Probab=23.90 E-value=2.3e+02 Score=21.15 Aligned_cols=62 Identities=10% Similarity=0.079 Sum_probs=33.8
Q ss_pred HHHccCCCCChhhHHHHHHHHHcCCCCHHHHHHHHhcCCCCCeehHHHHHHHHHhCCCHHHHH
Q 009066 28 ELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKAR 90 (545)
Q Consensus 28 ~~f~~~~~~~~~~~~~li~~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~a~ 90 (545)
.+++.+.+.++.+-.-.=..-.+. .+.++|..+.+.++.+...+|..+.+++-..|...-|.
T Consensus 18 ~ild~L~~~gvlt~~~~e~I~~~~-t~~~qa~~Lld~L~trG~~Af~~F~~aL~~~~~~~La~ 79 (86)
T cd08323 18 YIMDHMISDGVLTLDEEEKVKSKA-TQKEKAVMLINMILTKDNHAYVSFYNALLHEGYKDLAL 79 (86)
T ss_pred HHHHHHHhcCCCCHHHHHHHHcCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCChHHHH
Confidence 345555555555443322222233 55667777777666666667777766665555444443
No 482
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=23.89 E-value=5.6e+02 Score=23.41 Aligned_cols=51 Identities=6% Similarity=0.090 Sum_probs=27.1
Q ss_pred hccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh-ccCcHHHHHHHHHHH
Q 009066 148 VENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCS-HLSSLQLGKQVHQLV 198 (545)
Q Consensus 148 ~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~-~~~~~~~a~~~~~~~ 198 (545)
-+.++++++++.++++...+...+..--+.+-.+|- ..|....+.+++..+
T Consensus 12 eq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~ 63 (236)
T PF00244_consen 12 EQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSI 63 (236)
T ss_dssp HHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhH
Confidence 566777777777777777665555555554444442 223334444444443
No 483
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=23.88 E-value=5.2e+02 Score=22.97 Aligned_cols=60 Identities=15% Similarity=0.040 Sum_probs=32.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchHHHHHHHHh
Q 009066 343 IFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSM 402 (545)
Q Consensus 343 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 402 (545)
..+.++..|...||++.|-++|.-++...+-+....+..=+.++.+.+.-....+.++.|
T Consensus 43 ~L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l 102 (199)
T PF04090_consen 43 VLTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGEQNSELEFLEWL 102 (199)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCCcchHHHHHHHH
Confidence 345566666666666666666666666554443323444444555555444444555554
No 484
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=23.74 E-value=4.1e+02 Score=27.75 Aligned_cols=80 Identities=16% Similarity=0.126 Sum_probs=41.7
Q ss_pred HHHHHHHHcC---ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHH
Q 009066 243 AMISGYAQHG---KGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLL 319 (545)
Q Consensus 243 ~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 319 (545)
.|+..+...| ++.-|+-.+-++.+....|+..+-..| +.+|+..-+.. |+ ...+.-|+.+...|
T Consensus 262 ~lLw~lyd~ghl~~YPmALg~LadLeEi~pt~~r~~~~~l---------~~~AI~sa~~~---Y~-n~HvYPYty~gg~~ 328 (618)
T PF05053_consen 262 DLLWLLYDMGHLARYPMALGNLADLEEIDPTPGRPTPLEL---------FNEAISSARTY---YN-NHHVYPYTYLGGYY 328 (618)
T ss_dssp HHHHHHHHTTTTTT-HHHHHHHHHHHHHS--TTS--HHHH---------HHHHHHHHHHH---CT-T--SHHHHHHHHHH
T ss_pred HHHHHHHhcCchhhCchhhhhhHhHHhhccCCCCCCHHHH---------HHHHHHHHHHH---hc-CCccccceehhhHH
Confidence 3455555555 456677777777764333333222211 12222222211 12 34566788888889
Q ss_pred hHcCCHHHHHHHHHhC
Q 009066 320 GRAGKLVEAVDLIKKM 335 (545)
Q Consensus 320 ~~~g~~~~A~~~~~~m 335 (545)
.|.+++.+|+..+.+.
T Consensus 329 yR~~~~~eA~~~Wa~a 344 (618)
T PF05053_consen 329 YRHKRYREALRSWAEA 344 (618)
T ss_dssp HHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999988877654
No 485
>PRK02287 hypothetical protein; Provisional
Probab=23.00 E-value=4.9e+02 Score=22.42 Aligned_cols=25 Identities=20% Similarity=0.153 Sum_probs=12.3
Q ss_pred HHHHHHHHHhHcCCHHHHHHHHHhC
Q 009066 311 HYTCMVDLLGRAGKLVEAVDLIKKM 335 (545)
Q Consensus 311 ~~~~li~~~~~~g~~~~A~~~~~~m 335 (545)
+..+++.++.-.|..++|.++++..
T Consensus 109 ~vEAlAaaLyI~G~~~~A~~ll~~F 133 (171)
T PRK02287 109 SVEALAAALYILGFKEEAEKILSKF 133 (171)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhhC
Confidence 3344444455555555555555544
No 486
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=22.92 E-value=7e+02 Score=24.14 Aligned_cols=94 Identities=11% Similarity=0.085 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHHhHHh---cCCCCCHHHHHHHHHHH-----hHcCCHHHHHHHHHhCCC---CCCHh
Q 009066 274 ITFVALLLACNHAGLVDLGIQYFDSMVND---YGIAAKPDHYTCMVDLL-----GRAGKLVEAVDLIKKMPF---KPQPA 342 (545)
Q Consensus 274 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~~li~~~-----~~~g~~~~A~~~~~~m~~---~p~~~ 342 (545)
........-|++.|+.+.|.+.+....++ .|.+.|+..+..-+..+ .-...++.|..++++-+- +.-..
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlK 184 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLK 184 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHH
Confidence 34555666788888888888887765443 25555655554333222 223456778888887742 11223
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 009066 343 IFGTLLSACRVHKRLDLAEFAAMNLFN 369 (545)
Q Consensus 343 ~~~~li~~~~~~g~~~~A~~~~~~~~~ 369 (545)
+|..+- |..-.++.+|-.+|-..+.
T Consensus 185 vY~Gly--~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 185 VYQGLY--CMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred HHHHHH--HHHHHhHHHHHHHHHHHcc
Confidence 444433 3345677777777766543
No 487
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=22.91 E-value=6.6e+02 Score=23.82 Aligned_cols=241 Identities=12% Similarity=0.106 Sum_probs=0.0
Q ss_pred HHHHHHcCChHHHHHHHhhCCCCCcccHHHHHHHhcchhhhc--cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc
Q 009066 108 ISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVE--NSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHL 185 (545)
Q Consensus 108 i~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~--~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~ 185 (545)
+.......+++.|-++...-+..+.....++.+.+.+..... .=+.++=..+|+.---.-.+++..-|..-+..+.-.
T Consensus 3 ~~~~L~~~df~~a~~ll~~~~~~~l~~L~~i~~~l~~l~~~~~~~i~~~~W~~~Fd~~WPlv~~~~~~yW~~R~~Fl~lL 82 (292)
T PF13929_consen 3 LLKFLSKQDFDEANKLLQSNPENSLDPLKSIVSTLSQLPQSTEKKINIENWKKFFDSHWPLVDPSETAYWSLRLKFLKLL 82 (292)
T ss_pred HHHHHHHhhHHHHHHHHccCCcchhHHHHHHHHHHHhCccccccccCHHHHHHHHHhcCCCCCCCccchHHHHHHHHHHH
Q ss_pred CcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCC-------HHHHHHHHHh----ccCCChhhHHHHHHHHHHcCCh
Q 009066 186 SSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGD-------LEDACKLFLE----IQRKDVVTWNAMISGYAQHGKG 254 (545)
Q Consensus 186 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~-------~~~A~~~f~~----~~~~~~~~~~~li~~~~~~g~~ 254 (545)
... .|.....+-++.-|....+ -++-..+++- +.......|..|+. ++...
T Consensus 83 n~~---------------~p~~y~~~~~~~DYf~lK~s~g~~Lt~~Dli~FL~~~i~~~~~~k~~~Y~~LVk---~N~~V 144 (292)
T PF13929_consen 83 NIA---------------DPQNYSVRRFINDYFLLKKSMGCELTKEDLISFLKLVIINLSSNKSFNYWDLVK---RNKIV 144 (292)
T ss_pred hhc---------------CcccCCHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhccccccchHHHHHHH---hhHHH
Q ss_pred HHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHc--cCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHH
Q 009066 255 EKALRLFDKMKD-EGMKPDSITFVALLLACNH--AGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDL 331 (545)
Q Consensus 255 ~~A~~~~~~m~~-~g~~p~~~t~~~ll~a~~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 331 (545)
.+|+.+|+.... ..+--|..+...+++.... ......-.++.+.+...++-.++..+...++..+++.+++.+-.++
T Consensus 145 v~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~f 224 (292)
T PF13929_consen 145 VEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQF 224 (292)
T ss_pred HHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHH
Q ss_pred HHhC----CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHH
Q 009066 332 IKKM----PFKPQPAIFGTLLSACRVHKRLDLAEFAAMN 366 (545)
Q Consensus 332 ~~~m----~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 366 (545)
++.. ....|...|..+|..-...|+......+..+
T Consensus 225 W~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 225 WEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
No 488
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=22.46 E-value=2.7e+02 Score=23.91 Aligned_cols=58 Identities=12% Similarity=0.040 Sum_probs=28.1
Q ss_pred hCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCH
Q 009066 165 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDL 223 (545)
Q Consensus 165 ~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~ 223 (545)
..|++++..-. .++.........-.|.++++.+.+.+...+..+.---++.+...|-+
T Consensus 19 ~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 19 QRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 34554443332 23333333344445666666666665555544444455555555544
No 489
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=22.31 E-value=3.1e+02 Score=24.03 Aligned_cols=29 Identities=21% Similarity=0.375 Sum_probs=24.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhcCCCCCCc
Q 009066 347 LLSACRVHKRLDLAEFAAMNLFNLNPANAA 376 (545)
Q Consensus 347 li~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 376 (545)
.+..|.+.|.+++|.+++++..+ +|+...
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~ 145 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFS-DPESQK 145 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhc-CCCchh
Confidence 45678999999999999999988 776653
No 490
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=22.29 E-value=9.1e+02 Score=25.24 Aligned_cols=25 Identities=24% Similarity=0.430 Sum_probs=17.1
Q ss_pred HHHHHHHHHhCCCHHHHHHHHhhCC
Q 009066 73 WNTMISGFVQKKNMAKARDLFLAMP 97 (545)
Q Consensus 73 ~~~li~~~~~~g~~~~a~~~~~~~~ 97 (545)
...++.-|.+.+++++|..++..|.
T Consensus 411 ~~eL~~~yl~~~qi~eAi~lL~smn 435 (545)
T PF11768_consen 411 LVELISQYLRCDQIEEAINLLLSMN 435 (545)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhCC
Confidence 3456667777777777777777765
No 491
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=22.22 E-value=1.6e+02 Score=23.34 Aligned_cols=45 Identities=20% Similarity=0.240 Sum_probs=28.8
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 009066 243 AMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG 287 (545)
Q Consensus 243 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g 287 (545)
.++..+...+..-.|.++++.+.+.+...+..|..--|..+...|
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCC
Confidence 455566666667777778888877777777776666666665555
No 492
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=22.20 E-value=6e+02 Score=25.57 Aligned_cols=85 Identities=16% Similarity=0.153 Sum_probs=60.9
Q ss_pred hCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhCCCCCCcccHHHHHHH--------HHhcCCHHHHHHHHHhccC-
Q 009066 165 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISM--------YCKCGDLEDACKLFLEIQR- 235 (545)
Q Consensus 165 ~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~--------y~~~g~~~~A~~~f~~~~~- 235 (545)
...+.||..+.+-+.+.++..-..+-...+++...+++- |-.+.+.+||-. -.+...-+++.++++.|+.
T Consensus 176 tkkitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qqaD-PF~vffLaliiLiNake~ILq~~sdsKEe~ikfLenmp~~ 254 (669)
T KOG3636|consen 176 TKKITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQAD-PFLVFFLALIILINAKEEILQVKSDSKEEAIKFLENMPAQ 254 (669)
T ss_pred ccccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC-ceehHHHHHHHhcccHHHHhhhccccHHHHHHHHHcCchh
Confidence 345889999999988888888888888999998888873 333333333311 2345678899999999985
Q ss_pred ---CChhhHHHHHHHHHH
Q 009066 236 ---KDVVTWNAMISGYAQ 250 (545)
Q Consensus 236 ---~~~~~~~~li~~~~~ 250 (545)
.|+.-+-++...|+.
T Consensus 255 L~~eDvpDffsLAqyY~~ 272 (669)
T KOG3636|consen 255 LSVEDVPDFFSLAQYYSD 272 (669)
T ss_pred cccccchhHHHHHHHHhh
Confidence 366667777776654
No 493
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=21.81 E-value=5.6e+02 Score=22.65 Aligned_cols=58 Identities=12% Similarity=0.208 Sum_probs=37.1
Q ss_pred HHHHHHHccCcHHHHHHHHHHhHHhc-------C------CCCCHHHHHHHHHHHhHcCCHHHHHHHHHhC
Q 009066 278 ALLLACNHAGLVDLGIQYFDSMVNDY-------G------IAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335 (545)
Q Consensus 278 ~ll~a~~~~g~~~~a~~~~~~~~~~~-------~------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 335 (545)
+++..|.+.-++.+++++++.|.+-. | ..+.-..-|.-+..+.+.|.+|.|+.++++-
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLres 207 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRES 207 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhcc
Confidence 45566777788888888887775420 1 1222334455666777777777777777654
No 494
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=21.74 E-value=1.7e+02 Score=20.93 Aligned_cols=39 Identities=26% Similarity=0.356 Sum_probs=27.6
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 009066 249 AQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG 287 (545)
Q Consensus 249 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g 287 (545)
...|+.+++.+++++....|..|.......+..+....|
T Consensus 12 l~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~iG 50 (79)
T PF02607_consen 12 LLAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEIG 50 (79)
T ss_dssp HHTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 346888889999999888888887776666665554433
No 495
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=21.62 E-value=4.8e+02 Score=23.97 Aligned_cols=55 Identities=9% Similarity=-0.131 Sum_probs=29.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhcCC-----CCCCchhHHHHHHHHHHcCCchHHHHHHH
Q 009066 346 TLLSACRVHKRLDLAEFAAMNLFNLN-----PANAAGCYVQLANIYAAMKKWDDVARIRL 400 (545)
Q Consensus 346 ~li~~~~~~g~~~~A~~~~~~~~~~~-----p~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 400 (545)
-+..-|...|++++|.++++.+...- ......+...|..++.+.|+.++...+--
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~l 242 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSL 242 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 34455666666666666666663211 11111144556666666666666555443
No 496
>PF15469 Sec5: Exocyst complex component Sec5
Probab=21.49 E-value=5.3e+02 Score=22.25 Aligned_cols=55 Identities=15% Similarity=0.235 Sum_probs=29.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHhHH
Q 009066 241 WNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN 301 (545)
Q Consensus 241 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 301 (545)
+..++..-.+......++.++++..- ....-.-|.-|...|+++.+...|.+...
T Consensus 60 ~~pll~~~~k~~~l~~~l~~l~r~~f------lF~LP~~L~~~i~~~dy~~~i~dY~kak~ 114 (182)
T PF15469_consen 60 FKPLLERREKADKLRNALEFLQRNRF------LFNLPSNLRECIKKGDYDQAINDYKKAKS 114 (182)
T ss_pred HHHHHccHHHHHHHHHHHHHHHHHHH------HHHhHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 33344444444445555555555432 12222445566677777777777766654
No 497
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=21.40 E-value=4.4e+02 Score=27.94 Aligned_cols=63 Identities=13% Similarity=0.111 Sum_probs=34.3
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHhHH
Q 009066 237 DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN 301 (545)
Q Consensus 237 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 301 (545)
+...|..-+..+...++.. ....++++..-.-.+.....-++..|.+.|..+.+.++.+.+..
T Consensus 371 ~~~lW~vai~yL~~c~~~g--~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~ 433 (566)
T PF07575_consen 371 HHSLWQVAIGYLSSCPDEG--RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQ 433 (566)
T ss_dssp -TTTHHHHHHHHHS-SSS---HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHCChhh--HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3344555555544433322 44445555443444566677788888888888888888776654
No 498
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=21.22 E-value=1.8e+02 Score=20.82 Aligned_cols=29 Identities=14% Similarity=0.129 Sum_probs=21.0
Q ss_pred hHHHHHHHccCCC---CChhhHHHHHHHHHcC
Q 009066 23 LKDAQELFDKIPQ---PDVVSYNIMLSCILLN 51 (545)
Q Consensus 23 ~~~A~~~f~~~~~---~~~~~~~~li~~~~~~ 51 (545)
.+.|+.++..+.. +.+..||++...+.++
T Consensus 13 tEmA~~mL~DLr~dekRsPQLYnAI~k~L~RH 44 (82)
T PF11123_consen 13 TEMAQQMLADLRDDEKRSPQLYNAIGKLLDRH 44 (82)
T ss_pred HHHHHHHHHHhcchhhcChHHHHHHHHHHHHc
Confidence 6778888887773 5666788887765555
No 499
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=21.21 E-value=7.4e+02 Score=23.78 Aligned_cols=42 Identities=10% Similarity=0.069 Sum_probs=21.9
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhcc
Q 009066 193 QVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ 234 (545)
Q Consensus 193 ~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~ 234 (545)
++|+.+...++.|.-..+.-+.-++.++=.+.+...+++.+.
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~ 305 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLL 305 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHh
Confidence 445555555555555555544445555555555555555544
No 500
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=21.05 E-value=4.4e+02 Score=24.93 Aligned_cols=110 Identities=11% Similarity=0.064 Sum_probs=0.0
Q ss_pred HHHHhHHhcC--------CCCCHHHHHHHHHHH-hHcCCHHHHHHHHHhC-CCCCCHhHHHHHHHHHHhcCCHHHHHHHH
Q 009066 295 YFDSMVNDYG--------IAAKPDHYTCMVDLL-GRAGKLVEAVDLIKKM-PFKPQPAIFGTLLSACRVHKRLDLAEFAA 364 (545)
Q Consensus 295 ~~~~~~~~~~--------~~~~~~~~~~li~~~-~~~g~~~~A~~~~~~m-~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 364 (545)
++..+.++ | ++.|...++.|+.-= .+...++++++-.++- +...-...|..+..-|++-++.+.+.+..
T Consensus 60 lYkyL~E~-~n~kt~a~~ikfD~~~~n~l~kkneeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~ 138 (412)
T COG5187 60 LYKYLAEK-GNPKTSASVIKFDRGRMNTLLKKNEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWM 138 (412)
T ss_pred HHHHHHhc-cCCcccchheehhhHHHHHHHHhhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHH
Q ss_pred HHHhc------CCCCCCchhHHHHHHHHHHcCCchHHHHHHHHhhhCC
Q 009066 365 MNLFN------LNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENN 406 (545)
Q Consensus 365 ~~~~~------~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 406 (545)
.+..+ +.-+-.. +-..|+-.|....-.++-++..+.|.++|
T Consensus 139 ~~~~~~a~stg~KiDv~l-~kiRlg~~y~d~~vV~e~lE~~~~~iEkG 185 (412)
T COG5187 139 RRLMRDAMSTGLKIDVFL-CKIRLGLIYGDRKVVEESLEVADDIIEKG 185 (412)
T ss_pred HHHHHHHHhcccchhhHH-HHHHHHHhhccHHHHHHHHHHHHHHHHhC
Done!