Query 009066
Match_columns 545
No_of_seqs 699 out of 4327
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 18:03:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009066.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009066hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 3.7E-37 1.3E-41 325.5 36.2 284 111-405 282-579 (597)
2 2xpi_A Anaphase-promoting comp 100.0 3E-35 1E-39 310.9 33.8 396 3-406 81-546 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 3E-27 1E-31 235.7 35.5 367 12-391 5-388 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 5.1E-26 1.7E-30 226.8 37.4 348 46-405 7-368 (388)
5 4g26_A Pentatricopeptide repea 100.0 5.2E-28 1.8E-32 246.4 22.8 184 133-322 27-223 (501)
6 4g26_A Pentatricopeptide repea 100.0 1.3E-27 4.6E-32 243.5 21.6 200 154-354 7-223 (501)
7 2gw1_A Mitochondrial precursor 99.9 3.1E-23 1.1E-27 214.3 27.4 390 6-405 6-478 (514)
8 2y4t_A DNAJ homolog subfamily 99.9 1.2E-22 4.1E-27 206.4 30.8 302 70-385 26-372 (450)
9 2y4t_A DNAJ homolog subfamily 99.9 3.9E-22 1.3E-26 202.6 30.0 346 37-394 25-443 (450)
10 3fp2_A TPR repeat-containing p 99.9 1.4E-21 4.7E-26 203.2 27.9 389 6-405 25-491 (537)
11 2gw1_A Mitochondrial precursor 99.9 9.6E-21 3.3E-25 195.6 23.7 367 4-382 37-489 (514)
12 3ieg_A DNAJ homolog subfamily 99.9 1.2E-18 3.9E-23 170.8 32.8 301 71-405 4-335 (359)
13 3ieg_A DNAJ homolog subfamily 99.9 7.5E-19 2.6E-23 172.1 30.8 319 37-389 2-353 (359)
14 3fp2_A TPR repeat-containing p 99.8 2.9E-18 1E-22 178.0 30.1 362 2-376 55-497 (537)
15 1b89_A Protein (clathrin heavy 99.8 2.6E-19 9.1E-24 174.2 20.2 308 18-361 15-332 (449)
16 3hym_B Cell division cycle pro 99.8 5.7E-18 1.9E-22 163.9 29.6 285 99-392 20-321 (330)
17 1fch_A Peroxisomal targeting s 99.8 2.9E-18 9.9E-23 169.0 23.8 279 113-401 37-355 (368)
18 3hym_B Cell division cycle pro 99.8 2E-17 6.7E-22 160.1 27.9 265 130-405 20-299 (330)
19 1b89_A Protein (clathrin heavy 99.8 8.8E-19 3E-23 170.6 14.7 304 49-387 13-339 (449)
20 2ooe_A Cleavage stimulation fa 99.8 2.6E-16 9E-21 163.2 34.5 395 2-404 9-491 (530)
21 2xm6_A Protein corresponding t 99.8 5.1E-16 1.7E-20 159.4 35.8 348 5-372 38-434 (490)
22 4eqf_A PEX5-related protein; a 99.8 1.4E-17 4.8E-22 164.1 20.4 261 131-401 64-352 (365)
23 2xm6_A Protein corresponding t 99.8 2.8E-15 9.7E-20 153.8 36.7 350 35-406 36-433 (490)
24 1fch_A Peroxisomal targeting s 99.8 5E-17 1.7E-21 160.1 22.2 285 53-367 39-356 (368)
25 3mkr_A Coatomer subunit epsilo 99.8 5.2E-16 1.8E-20 147.4 27.9 267 113-399 11-288 (291)
26 4eqf_A PEX5-related protein; a 99.8 3.5E-17 1.2E-21 161.2 19.6 263 69-366 64-352 (365)
27 3cv0_A Peroxisome targeting si 99.7 8.1E-17 2.8E-21 155.5 20.0 259 133-402 22-312 (327)
28 4g1t_A Interferon-induced prot 99.7 4.8E-16 1.7E-20 158.7 25.4 359 38-415 51-469 (472)
29 2ooe_A Cleavage stimulation fa 99.7 3.6E-15 1.2E-19 154.7 28.6 367 2-374 42-496 (530)
30 3mkr_A Coatomer subunit epsilo 99.7 1.2E-15 4.2E-20 144.9 22.5 242 148-405 10-264 (291)
31 1xi4_A Clathrin heavy chain; a 99.7 8.5E-14 2.9E-18 150.7 38.4 344 10-400 989-1340(1630)
32 3cv0_A Peroxisome targeting si 99.7 4.7E-16 1.6E-20 150.1 19.1 267 71-369 22-314 (327)
33 3spa_A Mtrpol, DNA-directed RN 99.7 1.8E-17 6.3E-22 173.7 9.5 150 205-355 125-286 (1134)
34 1xi4_A Clathrin heavy chain; a 99.7 1.2E-13 4.2E-18 149.4 37.7 347 5-397 1021-1376(1630)
35 4g1t_A Interferon-induced prot 99.7 6E-15 2.1E-19 150.5 25.5 359 6-382 51-470 (472)
36 3spa_A Mtrpol, DNA-directed RN 99.7 3.5E-17 1.2E-21 171.6 5.2 146 172-323 127-286 (1134)
37 3uq3_A Heat shock protein STI1 99.6 2.1E-14 7.3E-19 133.3 21.7 219 173-405 6-236 (258)
38 2pl2_A Hypothetical conserved 99.6 1.8E-14 6.2E-19 130.5 19.1 195 204-402 2-211 (217)
39 3uq3_A Heat shock protein STI1 99.6 2E-14 7E-19 133.4 17.7 233 134-382 7-253 (258)
40 1xnf_A Lipoprotein NLPI; TPR, 99.6 3.6E-14 1.2E-18 133.3 19.4 242 148-399 16-269 (275)
41 3u4t_A TPR repeat-containing p 99.6 9.3E-14 3.2E-18 130.3 21.0 236 148-388 14-267 (272)
42 2pl2_A Hypothetical conserved 99.5 3.7E-13 1.3E-17 121.8 19.2 192 133-335 6-211 (217)
43 2ho1_A Type 4 fimbrial biogene 99.5 9E-13 3.1E-17 122.1 21.5 195 178-375 43-243 (252)
44 3e4b_A ALGK; tetratricopeptide 99.5 1.6E-13 5.5E-18 138.9 17.7 369 11-403 8-419 (452)
45 2q7f_A YRRB protein; TPR, prot 99.5 1.9E-13 6.5E-18 125.7 16.6 205 174-383 25-234 (243)
46 2h6f_A Protein farnesyltransfe 99.5 6.1E-13 2.1E-17 130.7 20.9 245 133-388 98-365 (382)
47 2ho1_A Type 4 fimbrial biogene 99.5 1.3E-12 4.4E-17 121.0 21.9 196 207-405 37-238 (252)
48 1ouv_A Conserved hypothetical 99.5 4.9E-12 1.7E-16 118.8 26.2 220 174-406 8-252 (273)
49 2vq2_A PILW, putative fimbrial 99.5 1.8E-12 6.1E-17 117.4 21.5 199 174-375 10-216 (225)
50 2vq2_A PILW, putative fimbrial 99.5 1.3E-12 4.5E-17 118.3 20.6 197 206-405 7-211 (225)
51 2q7f_A YRRB protein; TPR, prot 99.5 4.5E-13 1.5E-17 123.2 17.5 197 205-405 21-222 (243)
52 1ouv_A Conserved hypothetical 99.5 6.2E-12 2.1E-16 118.1 25.7 226 132-375 6-256 (273)
53 3u4t_A TPR repeat-containing p 99.5 2.3E-12 8E-17 120.7 21.8 227 174-405 5-250 (272)
54 3e4b_A ALGK; tetratricopeptide 99.5 8.5E-13 2.9E-17 133.5 19.7 336 46-407 11-389 (452)
55 1xnf_A Lipoprotein NLPI; TPR, 99.5 7.4E-13 2.5E-17 124.2 17.1 237 114-364 18-269 (275)
56 2h6f_A Protein farnesyltransfe 99.5 8.8E-13 3E-17 129.6 18.0 227 172-404 97-347 (382)
57 3sf4_A G-protein-signaling mod 99.5 1.1E-12 3.8E-17 130.4 18.7 255 148-404 20-335 (406)
58 4abn_A Tetratricopeptide repea 99.5 7.5E-13 2.6E-17 134.8 15.5 209 188-402 84-318 (474)
59 4a1s_A PINS, partner of inscut 99.4 1.2E-12 4E-17 130.9 16.0 255 148-404 59-371 (411)
60 3ro2_A PINS homolog, G-protein 99.4 3E-12 1E-16 123.4 18.4 256 148-405 16-332 (338)
61 2ond_A Cleavage stimulation fa 99.4 3.3E-11 1.1E-15 115.3 25.4 219 154-376 33-276 (308)
62 3vtx_A MAMA; tetratricopeptide 99.4 9.7E-12 3.3E-16 109.1 19.8 165 237-405 4-170 (184)
63 3sf4_A G-protein-signaling mod 99.4 9.1E-13 3.1E-17 131.1 14.6 219 174-393 89-364 (406)
64 3vtx_A MAMA; tetratricopeptide 99.4 9.5E-12 3.2E-16 109.2 16.7 168 205-375 3-175 (184)
65 4a1s_A PINS, partner of inscut 99.4 1.8E-12 6.1E-17 129.5 13.4 200 174-373 128-375 (411)
66 4e6h_A MRNA 3'-END-processing 99.4 5E-10 1.7E-14 117.4 31.5 400 2-405 62-570 (679)
67 3ro2_A PINS homolog, G-protein 99.4 9.1E-12 3.1E-16 120.0 16.4 200 174-373 85-335 (338)
68 3ulq_A Response regulator aspa 99.4 1.5E-11 5.3E-16 121.6 18.4 221 148-368 114-366 (383)
69 3ulq_A Response regulator aspa 99.4 8E-12 2.7E-16 123.7 16.1 225 178-404 109-367 (383)
70 3nf1_A KLC 1, kinesin light ch 99.3 1.9E-12 6.3E-17 123.7 9.1 236 133-404 28-306 (311)
71 2ond_A Cleavage stimulation fa 99.3 1.5E-10 5.2E-15 110.7 21.8 212 189-405 33-270 (308)
72 4gyw_A UDP-N-acetylglucosamine 99.3 3.1E-11 1.1E-15 128.0 18.1 163 237-404 8-173 (723)
73 3nf1_A KLC 1, kinesin light ch 99.3 7.5E-12 2.6E-16 119.5 10.1 238 100-373 26-310 (311)
74 1hz4_A MALT regulatory protein 99.3 1.7E-09 5.8E-14 106.3 27.2 257 148-404 25-321 (373)
75 3as5_A MAMA; tetratricopeptide 99.3 1.2E-10 4E-15 101.7 16.6 160 209-404 10-172 (186)
76 4abn_A Tetratricopeptide repea 99.3 1.4E-10 4.7E-15 118.1 19.0 209 153-366 84-317 (474)
77 3q15_A PSP28, response regulat 99.3 9.7E-11 3.3E-15 115.6 17.1 224 179-404 108-364 (378)
78 4i17_A Hypothetical protein; T 99.3 1.9E-10 6.5E-15 104.6 17.6 186 207-404 7-208 (228)
79 3as5_A MAMA; tetratricopeptide 99.3 3.5E-10 1.2E-14 98.5 18.3 160 172-335 8-170 (186)
80 4i17_A Hypothetical protein; T 99.2 3.8E-10 1.3E-14 102.6 17.8 204 170-385 5-223 (228)
81 3q15_A PSP28, response regulat 99.2 8.3E-10 2.8E-14 108.9 20.8 222 148-369 112-364 (378)
82 4e6h_A MRNA 3'-END-processing 99.2 1.3E-08 4.3E-13 106.8 29.2 369 36-407 64-535 (679)
83 1qqe_A Vesicular transport pro 99.2 6.9E-10 2.4E-14 105.2 17.2 201 187-402 32-266 (292)
84 3edt_B KLC 2, kinesin light ch 99.2 2.6E-10 8.8E-15 106.9 13.0 164 240-404 87-280 (283)
85 4gyw_A UDP-N-acetylglucosamine 99.1 3.7E-10 1.3E-14 119.8 13.8 161 207-370 9-174 (723)
86 1qqe_A Vesicular transport pro 99.1 1.7E-09 5.8E-14 102.5 15.9 168 208-375 78-274 (292)
87 1hz4_A MALT regulatory protein 99.0 4.4E-08 1.5E-12 96.2 24.4 226 179-404 21-281 (373)
88 3qky_A Outer membrane assembly 99.0 1.8E-08 6.2E-13 93.5 20.0 206 206-451 14-247 (261)
89 3edt_B KLC 2, kinesin light ch 99.0 3.6E-09 1.2E-13 99.0 14.6 223 148-370 12-281 (283)
90 2fo7_A Synthetic consensus TPR 99.0 1.4E-08 4.8E-13 82.9 15.3 130 240-372 3-134 (136)
91 3mv2_B Coatomer subunit epsilo 99.0 1.1E-07 3.8E-12 88.8 22.7 174 226-405 85-282 (310)
92 3qky_A Outer membrane assembly 99.0 1.4E-08 4.8E-13 94.3 16.8 201 170-392 13-248 (261)
93 2pzi_A Probable serine/threoni 99.0 3.4E-09 1.2E-13 112.8 13.2 169 218-391 402-583 (681)
94 2yhc_A BAMD, UPF0169 lipoprote 99.0 5.2E-08 1.8E-12 88.2 19.1 183 208-407 5-215 (225)
95 2fo7_A Synthetic consensus TPR 98.9 1.4E-08 4.8E-13 82.9 13.8 128 275-405 3-132 (136)
96 3mv2_B Coatomer subunit epsilo 98.9 8.4E-08 2.9E-12 89.6 20.1 178 191-376 85-288 (310)
97 3qou_A Protein YBBN; thioredox 98.9 3.1E-08 1.1E-12 93.4 17.6 176 223-403 102-282 (287)
98 2ifu_A Gamma-SNAP; membrane fu 98.9 3.5E-08 1.2E-12 94.1 17.6 221 149-397 3-253 (307)
99 3urz_A Uncharacterized protein 98.9 3.6E-08 1.2E-12 88.1 15.3 128 244-375 60-191 (208)
100 4ga2_A E3 SUMO-protein ligase 98.9 1.3E-09 4.6E-14 91.9 5.4 137 250-391 9-149 (150)
101 3rjv_A Putative SEL1 repeat pr 98.9 1.6E-07 5.5E-12 84.1 18.6 172 226-407 5-199 (212)
102 2pzi_A Probable serine/threoni 98.9 1E-07 3.4E-12 101.4 20.0 189 183-376 402-608 (681)
103 2r5s_A Uncharacterized protein 98.8 4.6E-08 1.6E-12 84.8 13.6 157 209-403 8-171 (176)
104 2uy1_A Cleavage stimulation fa 98.8 1.8E-06 6.1E-11 87.7 27.3 187 7-201 16-242 (493)
105 2r5s_A Uncharacterized protein 98.8 7.4E-08 2.5E-12 83.4 14.0 157 174-333 8-168 (176)
106 2vsy_A XCC0866; transferase, g 98.8 1E-07 3.4E-12 99.4 16.9 160 220-383 2-169 (568)
107 2vsy_A XCC0866; transferase, g 98.8 6.1E-08 2.1E-12 101.0 14.8 151 251-405 2-157 (568)
108 4ga2_A E3 SUMO-protein ligase 98.8 7.2E-09 2.5E-13 87.3 6.1 121 280-404 4-128 (150)
109 2yhc_A BAMD, UPF0169 lipoprote 98.8 2E-07 7E-12 84.3 16.0 185 171-376 3-219 (225)
110 3dra_A Protein farnesyltransfe 98.7 5.1E-06 1.7E-10 78.2 25.1 224 148-376 44-294 (306)
111 1hh8_A P67PHOX, NCF-2, neutrop 98.7 7.9E-07 2.7E-11 79.3 18.8 144 212-375 11-155 (213)
112 3qou_A Protein YBBN; thioredox 98.7 4E-07 1.4E-11 85.7 17.4 164 169-334 114-280 (287)
113 3dra_A Protein farnesyltransfe 98.7 1.3E-06 4.5E-11 82.2 20.6 213 187-404 48-286 (306)
114 3gyz_A Chaperone protein IPGC; 98.7 4.3E-08 1.5E-12 82.3 9.3 97 308-405 35-133 (151)
115 3urz_A Uncharacterized protein 98.7 2.2E-07 7.5E-12 82.9 14.6 135 211-349 58-198 (208)
116 2ifu_A Gamma-SNAP; membrane fu 98.7 5.7E-08 1.9E-12 92.6 11.0 198 184-403 3-222 (307)
117 3u3w_A Transcriptional activat 98.7 9.7E-07 3.3E-11 83.4 18.8 159 244-403 81-264 (293)
118 2vgx_A Chaperone SYCD; alterna 98.7 6.7E-08 2.3E-12 81.1 9.4 97 308-405 20-118 (148)
119 1hh8_A P67PHOX, NCF-2, neutrop 98.7 6.1E-07 2.1E-11 80.0 16.4 124 277-406 10-151 (213)
120 2qfc_A PLCR protein; TPR, HTH, 98.7 4.6E-07 1.6E-11 85.6 15.6 165 239-403 76-264 (293)
121 3rjv_A Putative SEL1 repeat pr 98.7 1.2E-06 4E-11 78.4 17.2 158 208-372 19-199 (212)
122 4gco_A Protein STI-1; structur 98.6 4.2E-07 1.4E-11 73.7 11.9 107 275-384 15-123 (126)
123 2uy1_A Cleavage stimulation fa 98.6 1.3E-06 4.3E-11 88.9 18.0 353 23-404 11-412 (493)
124 1na0_A Designed protein CTPR3; 98.6 5.9E-07 2E-11 72.0 12.5 114 274-390 10-125 (125)
125 1a17_A Serine/threonine protei 98.6 6.7E-07 2.3E-11 76.0 13.3 126 275-403 15-144 (166)
126 2xcb_A PCRH, regulatory protei 98.6 4.7E-07 1.6E-11 75.2 11.6 97 308-405 17-115 (142)
127 2c2l_A CHIP, carboxy terminus 98.6 1.3E-07 4.5E-12 88.8 9.0 188 209-404 6-198 (281)
128 2vyi_A SGTA protein; chaperone 98.6 6.8E-07 2.3E-11 72.3 12.2 117 274-393 13-131 (131)
129 3u3w_A Transcriptional activat 98.6 9.1E-06 3.1E-10 76.6 21.5 157 213-369 81-265 (293)
130 4gco_A Protein STI-1; structur 98.6 4.6E-07 1.6E-11 73.5 10.7 100 305-405 8-110 (126)
131 2lni_A Stress-induced-phosphop 98.5 7.9E-07 2.7E-11 72.3 12.1 115 274-391 17-133 (133)
132 2qfc_A PLCR protein; TPR, HTH, 98.5 3.1E-06 1.1E-10 79.9 16.7 160 210-369 78-265 (293)
133 2e2e_A Formate-dependent nitri 98.5 1.9E-06 6.4E-11 74.4 13.1 117 286-405 23-144 (177)
134 1p5q_A FKBP52, FK506-binding p 98.5 1.1E-06 3.9E-11 84.7 12.6 160 221-403 127-292 (336)
135 4f3v_A ESX-1 secretion system 98.5 7.7E-07 2.6E-11 82.0 10.5 128 242-373 106-240 (282)
136 3q7a_A Farnesyltransferase alp 98.5 8.2E-05 2.8E-09 70.8 24.7 172 148-324 65-257 (349)
137 3gw4_A Uncharacterized protein 98.4 1.8E-06 6.1E-11 76.1 12.6 150 219-368 4-174 (203)
138 3upv_A Heat shock protein STI1 98.4 1.3E-06 4.4E-11 70.7 10.2 96 309-405 4-101 (126)
139 3gw4_A Uncharacterized protein 98.4 1E-05 3.4E-10 71.2 16.5 127 209-335 28-173 (203)
140 4f3v_A ESX-1 secretion system 98.4 3.3E-06 1.1E-10 77.7 13.3 181 219-405 18-237 (282)
141 3gyz_A Chaperone protein IPGC; 98.4 1.7E-06 5.7E-11 72.5 10.0 98 275-374 38-137 (151)
142 2e2e_A Formate-dependent nitri 98.4 3.4E-06 1.2E-10 72.7 12.1 125 249-376 21-150 (177)
143 1elw_A TPR1-domain of HOP; HOP 98.4 6.4E-06 2.2E-10 65.0 12.8 108 275-385 6-115 (118)
144 1a17_A Serine/threonine protei 98.4 7.3E-06 2.5E-10 69.4 13.9 127 239-368 14-144 (166)
145 2kck_A TPR repeat; tetratricop 98.3 1.7E-06 5.9E-11 67.7 8.9 96 309-405 6-106 (112)
146 2c2l_A CHIP, carboxy terminus 98.3 3.9E-06 1.3E-10 78.7 12.7 191 171-371 3-200 (281)
147 3q49_B STIP1 homology and U bo 98.3 3.6E-06 1.2E-10 68.9 11.1 99 306-405 6-106 (137)
148 3q7a_A Farnesyltransferase alp 98.3 3.4E-05 1.2E-09 73.4 18.7 213 187-404 69-330 (349)
149 2fbn_A 70 kDa peptidylprolyl i 98.3 3.8E-06 1.3E-10 74.0 11.5 168 215-404 12-185 (198)
150 1hxi_A PEX5, peroxisome target 98.3 1.9E-06 6.4E-11 69.3 8.5 93 312-405 20-114 (121)
151 3sz7_A HSC70 cochaperone (SGT) 98.3 2.8E-06 9.6E-11 72.3 10.1 95 309-404 11-107 (164)
152 2vgx_A Chaperone SYCD; alterna 98.3 1.8E-06 6E-11 72.3 8.1 101 274-376 22-124 (148)
153 2lni_A Stress-induced-phosphop 98.3 4.6E-06 1.6E-10 67.6 10.5 99 306-405 13-113 (133)
154 1na0_A Designed protein CTPR3; 98.3 2.2E-05 7.6E-10 62.5 14.3 93 240-335 11-103 (125)
155 1elw_A TPR1-domain of HOP; HOP 98.3 5.7E-06 1.9E-10 65.3 10.5 97 308-405 3-101 (118)
156 3dss_A Geranylgeranyl transfer 98.3 0.00014 4.9E-09 68.8 21.6 223 154-384 47-317 (331)
157 2dba_A Smooth muscle cell asso 98.3 7.3E-06 2.5E-10 67.9 11.3 95 309-404 28-127 (148)
158 3upv_A Heat shock protein STI1 98.3 7.1E-06 2.4E-10 66.2 10.9 108 275-385 6-121 (126)
159 2xcb_A PCRH, regulatory protei 98.3 5.4E-06 1.9E-10 68.6 10.4 100 275-376 20-121 (142)
160 3sz7_A HSC70 cochaperone (SGT) 98.3 9.5E-06 3.3E-10 68.9 12.2 108 273-383 11-120 (164)
161 4gcn_A Protein STI-1; structur 98.2 3.4E-06 1.2E-10 68.4 8.5 96 309-404 8-111 (127)
162 1p5q_A FKBP52, FK506-binding p 98.2 1.1E-05 3.7E-10 77.8 13.2 120 206-328 146-283 (336)
163 2dba_A Smooth muscle cell asso 98.2 1.7E-05 5.7E-10 65.6 12.7 108 274-385 29-142 (148)
164 1wao_1 Serine/threonine protei 98.2 1.1E-05 3.9E-10 81.6 13.6 85 216-301 15-102 (477)
165 2vyi_A SGTA protein; chaperone 98.2 2.4E-05 8.1E-10 62.9 13.1 115 239-356 13-129 (131)
166 3q49_B STIP1 homology and U bo 98.2 1.2E-05 4.1E-10 65.7 10.7 100 272-373 8-109 (137)
167 2kck_A TPR repeat; tetratricop 98.2 9.7E-06 3.3E-10 63.3 9.5 98 276-375 9-111 (112)
168 1kt0_A FKBP51, 51 kDa FK506-bi 98.2 2.4E-05 8.2E-10 78.8 14.6 144 238-404 268-414 (457)
169 2fbn_A 70 kDa peptidylprolyl i 98.1 4.8E-06 1.6E-10 73.4 8.1 145 181-329 13-176 (198)
170 3dss_A Geranylgeranyl transfer 98.1 0.00044 1.5E-08 65.4 21.6 216 184-404 41-303 (331)
171 2hr2_A Hypothetical protein; a 98.1 7.7E-06 2.6E-10 68.0 8.3 92 312-404 14-130 (159)
172 1hxi_A PEX5, peroxisome target 98.1 1.2E-05 4E-10 64.5 9.1 96 278-375 22-119 (121)
173 4b4t_Q 26S proteasome regulato 98.1 2.2E-05 7.7E-10 78.3 13.3 163 241-403 58-243 (434)
174 2xev_A YBGF; tetratricopeptide 98.1 1.1E-05 3.9E-10 65.0 8.9 89 315-404 8-104 (129)
175 3rkv_A Putative peptidylprolyl 98.1 1.9E-05 6.6E-10 66.8 10.7 64 341-405 63-126 (162)
176 1wao_1 Serine/threonine protei 98.1 7.8E-06 2.7E-10 82.8 9.5 115 283-400 16-134 (477)
177 4gcn_A Protein STI-1; structur 98.1 1.1E-05 3.8E-10 65.3 8.7 31 343-373 85-115 (127)
178 1elr_A TPR2A-domain of HOP; HO 98.1 3.1E-05 1.1E-09 62.2 11.5 106 277-386 8-122 (131)
179 1elr_A TPR2A-domain of HOP; HO 98.1 9.6E-06 3.3E-10 65.3 7.7 96 309-405 4-108 (131)
180 2xev_A YBGF; tetratricopeptide 98.0 5.2E-05 1.8E-09 61.0 11.5 94 281-376 10-111 (129)
181 4b4t_Q 26S proteasome regulato 98.0 0.00011 3.7E-09 73.2 16.2 159 211-369 59-244 (434)
182 3ro3_A PINS homolog, G-protein 98.0 3.3E-05 1.1E-09 64.7 10.5 61 343-404 91-157 (164)
183 1ihg_A Cyclophilin 40; ppiase 98.0 3.7E-05 1.2E-09 75.0 12.1 137 239-397 224-362 (370)
184 3ro3_A PINS homolog, G-protein 98.0 3E-05 1E-09 65.0 9.9 95 276-370 52-158 (164)
185 2if4_A ATFKBP42; FKBP-like, al 98.0 1.7E-05 6E-10 76.3 9.3 147 239-406 180-329 (338)
186 3k9i_A BH0479 protein; putativ 98.0 4.5E-06 1.5E-10 66.5 4.1 61 342-403 28-88 (117)
187 3n71_A Histone lysine methyltr 97.9 9.5E-05 3.3E-09 74.5 14.0 125 282-406 318-465 (490)
188 3rkv_A Putative peptidylprolyl 97.9 2.3E-05 7.7E-10 66.4 7.9 128 239-385 12-141 (162)
189 2l6j_A TPR repeat-containing p 97.9 7.4E-06 2.5E-10 64.1 4.3 92 308-400 3-102 (111)
190 2if4_A ATFKBP42; FKBP-like, al 97.9 3E-05 1E-09 74.6 9.4 113 275-405 181-293 (338)
191 1dce_A Protein (RAB geranylger 97.9 0.00039 1.3E-08 71.7 18.1 168 223-394 45-244 (567)
192 3k9i_A BH0479 protein; putativ 97.9 1.1E-05 3.7E-10 64.2 5.0 90 286-376 3-96 (117)
193 1kt0_A FKBP51, 51 kDa FK506-bi 97.8 0.00017 5.9E-09 72.5 13.8 134 207-361 268-405 (457)
194 2hr2_A Hypothetical protein; a 97.8 4.8E-05 1.6E-09 63.2 7.8 66 311-376 59-137 (159)
195 1na3_A Designed protein CTPR2; 97.8 9.7E-05 3.3E-09 55.1 8.2 82 308-390 8-91 (91)
196 3ma5_A Tetratricopeptide repea 97.7 0.00013 4.5E-09 55.9 8.0 64 340-404 6-69 (100)
197 1ihg_A Cyclophilin 40; ppiase 97.6 0.00043 1.5E-08 67.3 12.3 117 210-329 226-361 (370)
198 2kat_A Uncharacterized protein 97.6 0.00013 4.4E-09 57.5 6.8 76 328-404 4-81 (115)
199 3n71_A Histone lysine methyltr 97.5 0.00029 9.8E-09 71.0 10.1 123 247-369 318-463 (490)
200 1zu2_A Mitochondrial import re 97.4 5.3E-05 1.8E-09 62.8 2.8 82 323-405 16-120 (158)
201 3qwp_A SET and MYND domain-con 97.4 0.00041 1.4E-08 68.7 9.4 117 316-450 294-427 (429)
202 1zu2_A Mitochondrial import re 97.4 0.00014 4.6E-09 60.4 4.6 108 288-405 17-147 (158)
203 1klx_A Cysteine rich protein B 97.3 0.0038 1.3E-07 50.9 12.5 109 253-370 10-126 (138)
204 2l6j_A TPR repeat-containing p 97.3 0.00023 8E-09 55.2 4.8 94 238-335 4-104 (111)
205 1dce_A Protein (RAB geranylger 97.3 0.0067 2.3E-07 62.5 16.5 151 250-404 40-220 (567)
206 1klx_A Cysteine rich protein B 97.2 0.0031 1.1E-07 51.4 11.3 113 287-408 9-129 (138)
207 2kat_A Uncharacterized protein 97.2 0.0012 4E-08 51.8 8.0 80 292-373 4-85 (115)
208 3bee_A Putative YFRE protein; 97.2 0.0016 5.3E-08 49.0 8.0 68 339-407 4-74 (93)
209 3mkq_A Coatomer beta'-subunit; 97.1 0.024 8.4E-07 61.1 20.1 152 49-233 610-762 (814)
210 3ly7_A Transcriptional activat 97.0 0.014 5E-07 55.4 14.8 138 236-375 192-344 (372)
211 1na3_A Designed protein CTPR2; 97.0 0.0072 2.5E-07 44.5 10.4 78 240-320 11-88 (91)
212 3qww_A SET and MYND domain-con 97.0 0.0039 1.3E-07 61.6 10.9 91 285-375 310-421 (433)
213 3qww_A SET and MYND domain-con 97.0 0.0009 3.1E-08 66.2 6.2 84 321-404 310-410 (433)
214 3qwp_A SET and MYND domain-con 96.9 0.0072 2.5E-07 59.8 12.5 97 280-376 294-411 (429)
215 3ma5_A Tetratricopeptide repea 96.9 0.0041 1.4E-07 47.3 8.5 58 208-265 8-68 (100)
216 2kc7_A BFR218_protein; tetratr 96.8 0.0062 2.1E-07 45.9 8.5 64 315-379 6-72 (99)
217 3mkq_A Coatomer beta'-subunit; 96.8 0.04 1.4E-06 59.4 18.0 47 217-265 662-708 (814)
218 1pc2_A Mitochondria fission pr 96.6 0.011 3.7E-07 48.4 8.8 65 339-404 30-99 (152)
219 3ly7_A Transcriptional activat 96.4 0.089 3.1E-06 50.0 15.5 163 119-313 182-347 (372)
220 2kc7_A BFR218_protein; tetratr 96.3 0.0038 1.3E-07 47.1 4.3 55 246-301 8-63 (99)
221 1wy6_A Hypothetical protein ST 96.2 0.32 1.1E-05 38.4 16.1 140 249-408 18-157 (172)
222 3bee_A Putative YFRE protein; 96.2 0.031 1.1E-06 41.7 9.0 77 306-384 3-84 (93)
223 3lvg_A Clathrin heavy chain 1; 96.0 0.001 3.4E-08 64.7 -0.2 234 6-258 54-324 (624)
224 2v5f_A Prolyl 4-hydroxylase su 95.8 0.038 1.3E-06 42.2 8.1 69 308-376 4-81 (104)
225 3mkq_B Coatomer subunit alpha; 95.5 0.79 2.7E-05 38.4 15.4 46 111-163 15-60 (177)
226 3u64_A Protein TP_0956; tetrat 95.5 0.034 1.2E-06 50.7 7.5 86 325-411 179-275 (301)
227 3mkq_B Coatomer subunit alpha; 95.4 0.98 3.4E-05 37.8 16.9 129 215-367 13-141 (177)
228 1pc2_A Mitochondria fission pr 95.4 0.04 1.4E-06 45.1 7.1 85 290-376 15-106 (152)
229 1nzn_A CGI-135 protein, fissio 95.1 0.13 4.6E-06 40.3 8.8 66 339-404 33-102 (126)
230 3lvg_A Clathrin heavy chain 1; 94.6 0.0011 3.8E-08 64.3 -5.0 237 101-361 54-324 (624)
231 1y8m_A FIS1; mitochondria, unk 94.6 1 3.5E-05 35.9 12.8 66 339-404 37-105 (144)
232 3u64_A Protein TP_0956; tetrat 93.9 0.16 5.6E-06 46.3 7.7 82 289-373 179-272 (301)
233 4gns_B Protein CSD3, chitin bi 93.4 0.8 2.7E-05 48.1 13.1 55 348-403 344-398 (754)
234 2v5f_A Prolyl 4-hydroxylase su 93.3 0.29 1E-05 37.1 7.4 58 278-335 10-72 (104)
235 1qsa_A Protein (soluble lytic 92.6 10 0.00036 38.9 30.0 114 252-369 228-347 (618)
236 1nzn_A CGI-135 protein, fissio 92.4 0.89 3E-05 35.6 9.0 85 290-376 18-109 (126)
237 3ltj_A Alpharep-4; protein eng 92.1 5.1 0.00018 34.1 15.8 180 28-221 18-197 (201)
238 3o48_A Mitochondria fission 1 91.5 1.2 4.2E-05 35.0 8.8 46 359-404 61-106 (134)
239 4ady_A RPN2, 26S proteasome re 91.2 19 0.00063 38.8 24.3 251 112-368 385-656 (963)
240 3ltm_A Alpha-REP4; protein eng 91.0 7 0.00024 33.5 15.9 186 23-222 18-203 (211)
241 1wy6_A Hypothetical protein ST 90.9 4.9 0.00017 31.8 15.5 140 148-306 18-157 (172)
242 4h7y_A Dual specificity protei 90.4 1.2 4.2E-05 35.9 8.0 54 323-376 74-129 (161)
243 4h7y_A Dual specificity protei 89.3 0.97 3.3E-05 36.5 6.5 100 307-407 11-125 (161)
244 2p58_C Putative type III secre 88.6 4.3 0.00015 29.9 8.8 61 109-177 48-108 (116)
245 2uwj_G Type III export protein 88.4 4 0.00014 30.0 8.6 61 109-177 47-107 (115)
246 4gns_B Protein CSD3, chitin bi 87.7 7.9 0.00027 40.7 14.0 123 212-336 253-398 (754)
247 3lpz_A GET4 (YOR164C homolog); 87.4 19 0.00063 33.6 22.8 167 211-404 39-215 (336)
248 4ady_A RPN2, 26S proteasome re 87.2 25 0.00085 37.9 17.5 258 80-344 384-664 (963)
249 3txn_A 26S proteasome regulato 87.0 21 0.00073 34.2 15.7 128 173-300 20-166 (394)
250 4b4t_P 26S proteasome regulato 86.4 20 0.00067 35.2 15.6 184 150-335 29-244 (445)
251 3ffl_A Anaphase-promoting comp 86.4 4.6 0.00016 33.2 9.0 116 209-338 22-151 (167)
252 1v54_E Cytochrome C oxidase po 84.9 4.6 0.00016 30.0 7.4 63 253-317 25-87 (109)
253 4b4t_P 26S proteasome regulato 84.7 31 0.0011 33.7 17.6 181 115-302 30-247 (445)
254 2p58_C Putative type III secre 84.4 7.1 0.00024 28.8 8.1 86 187-277 22-107 (116)
255 2ff4_A Probable regulatory pro 83.9 8.4 0.00029 37.0 11.4 70 241-311 174-247 (388)
256 2ff4_A Probable regulatory pro 83.7 2 6.9E-05 41.5 6.9 66 345-411 175-245 (388)
257 4fhn_B Nucleoporin NUP120; pro 83.3 40 0.0014 37.7 18.1 79 210-290 902-988 (1139)
258 2uwj_G Type III export protein 83.1 6.7 0.00023 28.9 7.6 86 187-277 21-106 (115)
259 3lpz_A GET4 (YOR164C homolog); 83.0 30 0.001 32.2 21.5 181 79-301 21-215 (336)
260 3txn_A 26S proteasome regulato 82.6 35 0.0012 32.7 18.7 274 8-302 21-343 (394)
261 2wpv_A GET4, UPF0363 protein Y 80.3 36 0.0012 31.3 22.3 181 80-302 23-217 (312)
262 1v54_E Cytochrome C oxidase po 80.2 9 0.00031 28.4 7.4 62 153-215 26-87 (109)
263 3o48_A Mitochondria fission 1 79.8 11 0.00036 29.7 8.3 71 306-376 37-113 (134)
264 4fhn_B Nucleoporin NUP120; pro 78.4 39 0.0013 37.7 15.8 60 276-335 902-964 (1139)
265 3ltm_A Alpha-REP4; protein eng 77.8 31 0.0011 29.2 18.2 37 95-131 27-63 (211)
266 1y8m_A FIS1; mitochondria, unk 77.8 25 0.00085 28.0 10.7 71 306-376 36-112 (144)
267 2y69_E Cytochrome C oxidase su 77.2 8.4 0.00029 30.3 6.9 62 254-317 69-130 (152)
268 3ltj_A Alpharep-4; protein eng 76.2 34 0.0011 28.7 17.2 78 205-286 119-196 (201)
269 3ffl_A Anaphase-promoting comp 76.0 13 0.00044 30.6 8.1 25 378-402 124-148 (167)
270 2wpv_A GET4, UPF0363 protein Y 72.6 59 0.002 29.9 22.7 168 210-404 36-216 (312)
271 1zbp_A Hypothetical protein VP 71.5 56 0.0019 29.2 12.3 53 248-301 7-59 (273)
272 1zbp_A Hypothetical protein VP 70.5 14 0.00049 33.0 7.7 113 281-405 5-129 (273)
273 2y69_E Cytochrome C oxidase su 67.9 24 0.00083 27.7 7.5 59 155-214 71-129 (152)
274 4b4t_R RPN7, 26S proteasome re 67.7 27 0.00092 34.0 10.0 96 208-303 132-238 (429)
275 3mv2_A Coatomer subunit alpha; 67.3 60 0.002 29.9 11.3 59 332-405 196-256 (325)
276 2r9g_A AAA ATPase, central reg 64.5 36 0.0012 28.8 8.5 69 133-204 12-85 (204)
277 1wdy_A 2-5A-dependent ribonucl 61.0 58 0.002 28.7 10.6 21 107-127 8-28 (285)
278 1wdy_A 2-5A-dependent ribonucl 58.7 95 0.0032 27.2 14.0 206 10-231 6-240 (285)
279 4b4t_R RPN7, 26S proteasome re 58.0 81 0.0028 30.5 11.5 96 240-335 133-234 (429)
280 2qx5_A Nucleoporin NIC96; mRNA 56.4 90 0.0031 32.2 11.7 17 386-402 548-564 (661)
281 4b4t_S RPN3, 26S proteasome re 55.2 1.6E+02 0.0054 29.3 12.7 180 207-408 231-432 (523)
282 3esl_A Checkpoint serine/threo 54.6 99 0.0034 26.2 13.1 103 326-455 61-169 (202)
283 1oyz_A Hypothetical protein YI 54.3 1.2E+02 0.004 26.9 19.3 18 98-115 65-82 (280)
284 3eiq_C Programmed cell death p 53.3 1.5E+02 0.0051 27.8 19.1 70 72-142 56-129 (358)
285 2l0z_A Glycoprotein G2; zinc-b 52.7 4.7 0.00016 23.8 0.9 10 535-544 20-29 (42)
286 3ctd_A Putative ATPase, AAA fa 52.4 59 0.002 27.7 7.9 72 131-204 31-107 (213)
287 3bge_A Predicted ATPase; struc 52.2 45 0.0015 28.1 7.0 49 136-186 8-56 (201)
288 2nsz_A Programmed cell death p 51.6 68 0.0023 24.9 7.9 62 211-272 11-77 (129)
289 1qsa_A Protein (soluble lytic 50.8 2.2E+02 0.0075 29.1 30.0 364 9-404 10-409 (618)
290 3esl_A Checkpoint serine/threo 50.4 1.2E+02 0.004 25.8 10.0 98 56-168 61-168 (202)
291 2qx5_A Nucleoporin NIC96; mRNA 50.4 2.3E+02 0.0078 29.2 17.7 26 7-34 154-179 (661)
292 2ion_A PDCD4, programmed cell 46.8 79 0.0027 25.4 7.7 23 75-97 14-36 (152)
293 4a1g_A Mitotic checkpoint seri 45.0 1.2E+02 0.0041 24.4 8.9 49 359-408 83-133 (152)
294 3hra_A Ankyrin repeat family p 44.0 1.1E+02 0.0036 25.3 8.8 58 214-272 110-172 (201)
295 1ug3_A EIF4GI, eukaryotic prot 43.3 82 0.0028 29.3 8.5 21 122-142 67-87 (339)
296 2d2s_A Exocyst complex compone 42.2 90 0.0031 27.3 8.0 88 244-335 24-117 (235)
297 2ion_A PDCD4, programmed cell 42.1 65 0.0022 25.9 6.5 62 210-271 12-78 (152)
298 2nsz_A Programmed cell death p 42.1 1.2E+02 0.0041 23.5 9.1 21 107-127 13-33 (129)
299 2wvi_A Mitotic checkpoint seri 41.3 1.4E+02 0.0049 24.3 8.6 48 360-408 79-128 (164)
300 2k0q_A Putative uncharacterize 39.8 11 0.00037 25.5 1.2 22 521-542 8-29 (74)
301 3eu9_A Huntingtin-interacting 37.8 1.6E+02 0.0053 24.9 9.2 82 322-405 152-236 (240)
302 3aji_A 26S proteasome non-ATPa 37.5 1.8E+02 0.0063 24.4 9.6 14 112-125 48-61 (231)
303 1n11_A Ankyrin; clathrin, BAND 37.5 2.7E+02 0.0094 26.4 12.8 21 351-371 285-305 (437)
304 2rfa_A Transient receptor pote 37.2 1.9E+02 0.0064 24.4 10.8 46 159-204 136-183 (232)
305 4gq2_M Nucleoporin NUP120; bet 35.0 4.4E+02 0.015 28.5 13.7 51 279-335 816-866 (950)
306 4b4t_S RPN3, 26S proteasome re 34.5 1.2E+02 0.0042 30.0 8.3 26 310-335 232-257 (523)
307 1n11_A Ankyrin; clathrin, BAND 33.1 3.2E+02 0.011 25.9 12.0 16 351-366 318-333 (437)
308 3ljn_A Hypothetical protein; a 33.1 2.4E+02 0.0081 26.0 10.2 17 216-232 179-195 (364)
309 2pk8_A Uncharacterized protein 32.7 27 0.00093 25.1 2.3 28 434-461 14-41 (103)
310 3b7b_A Euchromatic histone-lys 31.3 2.3E+02 0.0078 23.9 9.1 16 111-126 84-99 (237)
311 3kea_A K1L; tropism, ANK repea 30.2 1.8E+02 0.0061 25.9 8.4 89 317-410 134-222 (285)
312 2fe3_A Peroxide operon regulat 29.5 1.4E+02 0.0049 23.5 6.7 62 263-326 12-73 (145)
313 1bpo_A Protein (clathrin); cla 28.9 4.2E+02 0.014 25.9 12.0 130 198-337 352-484 (494)
314 3ygs_P Procaspase 9; apoptosis 27.9 83 0.0028 23.0 4.5 38 221-258 51-88 (97)
315 2xig_A Ferric uptake regulatio 27.5 2E+02 0.0067 22.9 7.2 62 263-326 17-78 (150)
316 2zu6_B Programmed cell death p 27.2 3.6E+02 0.012 24.6 16.7 25 212-236 171-195 (307)
317 3ygs_P Procaspase 9; apoptosis 26.6 60 0.002 23.8 3.5 27 116-142 52-78 (97)
318 3ljn_A Hypothetical protein; a 26.5 3.7E+02 0.013 24.5 10.9 217 170-401 16-266 (364)
319 1oyz_A Hypothetical protein YI 25.6 3.4E+02 0.012 23.7 21.0 19 98-116 34-52 (280)
320 4gq2_M Nucleoporin NUP120; bet 24.8 6.7E+02 0.023 27.1 12.9 48 275-323 899-950 (950)
321 4a1g_A Mitotic checkpoint seri 24.2 2.8E+02 0.0094 22.2 9.0 43 191-233 84-127 (152)
322 1k1a_A B-cell lymphoma 3-encod 24.0 1.9E+02 0.0065 24.5 7.2 51 181-231 15-67 (241)
323 4ets_A Ferric uptake regulatio 24.0 1.7E+02 0.0057 23.7 6.2 71 255-326 14-86 (162)
324 1bd8_A P19INK4D CDK4/6 inhibit 23.9 2E+02 0.007 22.2 6.9 16 217-232 108-123 (156)
325 2yru_A Steroid receptor RNA ac 23.5 1.2E+02 0.0039 23.2 4.7 43 159-201 48-90 (118)
326 1k1a_A B-cell lymphoma 3-encod 23.5 2.4E+02 0.0084 23.7 7.8 13 321-333 192-204 (241)
327 2wvi_A Mitotic checkpoint seri 23.3 3E+02 0.01 22.3 7.8 50 156-205 79-129 (164)
328 3hra_A Ankyrin repeat family p 22.7 3.1E+02 0.01 22.2 9.7 45 17-64 13-61 (201)
329 2d2s_A Exocyst complex compone 22.5 2.9E+02 0.0099 24.0 7.8 27 378-404 93-119 (235)
330 3eu9_A Huntingtin-interacting 21.8 3.5E+02 0.012 22.5 10.5 15 17-32 17-31 (240)
331 2zu6_B Programmed cell death p 20.8 4.8E+02 0.016 23.7 11.6 66 241-308 169-236 (307)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.7e-37 Score=325.47 Aligned_cols=284 Identities=13% Similarity=0.045 Sum_probs=238.8
Q ss_pred HHHcCChHHHHHHHhhCCC--CCcccHHHHHHHhcchhhhccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcH
Q 009066 111 YIECGQLDKAVELFKVAPV--KSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSL 188 (545)
Q Consensus 111 ~~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~ 188 (545)
|.+.|++++|.++|+++.. ++..+|+.++.+| .+.|++++|+++|+++.+.+ +.+..++..++.++.+.|++
T Consensus 282 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~-----~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~ 355 (597)
T 2xpi_A 282 TSHEDELRRAEDYLSSINGLEKSSDLLLCKADTL-----FVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEK 355 (597)
T ss_dssp TTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHH-----HHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCH
T ss_pred HcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHH-----HHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCH
Confidence 3344444445555544443 4566677777777 77888888888888887654 33666777888888888888
Q ss_pred HHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHHH
Q 009066 189 QLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR---KDVVTWNAMISGYAQHGKGEKALRLFDKMK 265 (545)
Q Consensus 189 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 265 (545)
++|..+++.+.+.. +.+..+++.++.+|.++|++++|.++|+++.+ .+..+|+.++.+|.+.|++++|+++|+++.
T Consensus 356 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 434 (597)
T 2xpi_A 356 NKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAA 434 (597)
T ss_dssp HHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 88888888887553 55678899999999999999999999998863 468899999999999999999999999999
Q ss_pred HcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhC-------CCC
Q 009066 266 DEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-------PFK 338 (545)
Q Consensus 266 ~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~ 338 (545)
+.+ +++..++..++.+|.+.|++++|.++|+++.+. .+.++.+|..++.+|.+.|++++|.++|+++ +..
T Consensus 435 ~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 511 (597)
T 2xpi_A 435 RLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSN 511 (597)
T ss_dssp HTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC
T ss_pred HhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccc
Confidence 864 347789999999999999999999999999874 3557899999999999999999999999988 446
Q ss_pred CC--HhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchHHHHHHHHhhhC
Q 009066 339 PQ--PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKEN 405 (545)
Q Consensus 339 p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 405 (545)
|+ ..+|..++.+|.+.|++++|+..++++++.+|++.. +|..++.+|.+.|++++|.+.++++.+.
T Consensus 512 p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 512 EKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDAN-VHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp SGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHH-HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChH-HHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 77 689999999999999999999999999999999887 9999999999999999999999998764
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3e-35 Score=310.91 Aligned_cols=396 Identities=13% Similarity=0.038 Sum_probs=341.1
Q ss_pred CCCccHHHHHHHHHHhCCCChHHHHHHHccCC--CCChhhHHHHHHHHHcCCCCHHHHHHHHhcCC--CCCeehHHHHHH
Q 009066 3 VKTTVNWNSVLAGFAKQRGKLKDAQELFDKIP--QPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP--IKDTASWNTMIS 78 (545)
Q Consensus 3 ~~~~~~~~~li~~~~~~g~~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~~g~~~~A~~~~~~m~--~~d~~~~~~li~ 78 (545)
.+++..++.++..|.+.|+ +++|..+|++|. .||..+|+.++..|.+. |++++|+.+|+++. +++..+|+.++.
T Consensus 81 ~~~~~~~~~~~~~~~~~g~-~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~l~~ 158 (597)
T 2xpi_A 81 LSREDYLRLWRHDALMQQQ-YKCAAFVGEKVLDITGNPNDAFWLAQVYCCT-GDYARAKCLLTKEDLYNRSSACRYLAAF 158 (597)
T ss_dssp -CHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHT-TCHHHHHHHHHHTCGGGTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccC-chHHHHHHHHHHhhCCCchHHHHHHHHHHHc-CcHHHHHHHHHHHhccccchhHHHHHHH
Confidence 3577889999999999999 999999999986 58889999999999999 99999999999995 778899999999
Q ss_pred HHHhCCCHHHHHHHHhhCCcC-------------------CHhHHHHHHHHHHHcCChHHHHHHHhhCCCCCc---ccHH
Q 009066 79 GFVQKKNMAKARDLFLAMPEK-------------------NSVSWSAMISGYIECGQLDKAVELFKVAPVKSV---VAWT 136 (545)
Q Consensus 79 ~~~~~g~~~~a~~~~~~~~~~-------------------~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~---~~~~ 136 (545)
+|.+.|++++|.++|+++... +..+|+.++.+|.+.|++++|.++|+++...++ ..|.
T Consensus 159 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 238 (597)
T 2xpi_A 159 CLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFD 238 (597)
T ss_dssp HHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHH
Confidence 999999999999999966544 378999999999999999999999998864332 3333
Q ss_pred HHHHHhc---------------------------------chhhhccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 009066 137 AMISGYM---------------------------------KFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCS 183 (545)
Q Consensus 137 ~li~~~~---------------------------------~~g~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~ 183 (545)
.+...+. -..+.+.|++++|+++|+++.+. +++..++..++.++.
T Consensus 239 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~ 316 (597)
T 2xpi_A 239 QLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLF 316 (597)
T ss_dssp HHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHH
T ss_pred HHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHH
Confidence 3322111 01126788999999999998865 689999999999999
Q ss_pred ccCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHH
Q 009066 184 HLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR---KDVVTWNAMISGYAQHGKGEKALRL 260 (545)
Q Consensus 184 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~ 260 (545)
+.|++++|.++|+.+.+.+ +.+..+++.++.+|.+.|++++|.++|+++.+ .+..+|+.++..|.+.|++++|.++
T Consensus 317 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 395 (597)
T 2xpi_A 317 VRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRY 395 (597)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHH
Confidence 9999999999999999876 45788999999999999999999999998863 4788999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhC-CC-C
Q 009066 261 FDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PF-K 338 (545)
Q Consensus 261 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~ 338 (545)
|+++.+.. +.+..++..++.++.+.|++++|.++|+++.+ ..+.+..+|..++.+|.+.|++++|.++|+++ .. .
T Consensus 396 ~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 472 (597)
T 2xpi_A 396 FSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAAR--LFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQ 472 (597)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--TTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 99998753 33677999999999999999999999999986 34568899999999999999999999999998 22 2
Q ss_pred CCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcC------CCCCCchhHHHHHHHHHHcCCchHHHHHHHHhhhCC
Q 009066 339 PQPAIFGTLLSACRVHKRLDLAEFAAMNLFNL------NPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENN 406 (545)
Q Consensus 339 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 406 (545)
.+..+|+.++..|.+.|++++|+..|+++.+. +|+....+|..++.+|.+.|++++|.++++++.+.+
T Consensus 473 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 546 (597)
T 2xpi_A 473 YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS 546 (597)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 46889999999999999999999999999876 565422289999999999999999999999988754
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=3e-27 Score=235.69 Aligned_cols=367 Identities=12% Similarity=0.093 Sum_probs=309.1
Q ss_pred HHHHHHhCCCChHHHHHHHccCC--CCChh-hHHHHHHHHHcCCCCHHHHHHHHhcCC---CCCeehHHHHHHHHHhCCC
Q 009066 12 VLAGFAKQRGKLKDAQELFDKIP--QPDVV-SYNIMLSCILLNSDDVVAAFDFFQRLP---IKDTASWNTMISGFVQKKN 85 (545)
Q Consensus 12 li~~~~~~g~~~~~A~~~f~~~~--~~~~~-~~~~li~~~~~~~g~~~~A~~~~~~m~---~~d~~~~~~li~~~~~~g~ 85 (545)
+...+.+.|+ +++|.+.|+.+. .|+.. .+..+...+.+. |++++|...++... +.+..+|..+...|.+.|+
T Consensus 5 ~a~~~~~~g~-~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 5 LAHREYQAGD-FEAAERHCMQLWRQEPDNTGVLLLLSSIHFQC-RRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCC
Confidence 4556777898 999999998875 46544 445555566667 99999999998766 5567889999999999999
Q ss_pred HHHHHHHHhhCCc---CCHhHHHHHHHHHHHcCChHHHHHHHhhCC--CC-CcccHHHHHHHhcchhhhccCChHHHHHH
Q 009066 86 MAKARDLFLAMPE---KNSVSWSAMISGYIECGQLDKAVELFKVAP--VK-SVVAWTAMISGYMKFGYVENSWAEDGLKL 159 (545)
Q Consensus 86 ~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~~~--~~-~~~~~~~li~~~~~~g~~~~g~~~~A~~~ 159 (545)
+++|...|+++.. .+..++..+...|.+.|++++|.+.|+++. .| +...+..+...+ ...|++++|++.
T Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~-----~~~g~~~~A~~~ 157 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLL-----KALGRLEEAKAC 157 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHH-----HTTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH-----HHccCHHHHHHH
Confidence 9999999998873 356689999999999999999999998765 23 445677788888 889999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhccC---C
Q 009066 160 LRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR---K 236 (545)
Q Consensus 160 ~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~ 236 (545)
|+++.+.. +.+..++..+...+...|++++|...++.+++.+ +.+...+..+...+...|++++|...|++..+ .
T Consensus 158 ~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 235 (388)
T 1w3b_A 158 YLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN 235 (388)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 99998753 3357788999999999999999999999998875 44567888899999999999999999987753 3
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHH
Q 009066 237 DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMV 316 (545)
Q Consensus 237 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li 316 (545)
+..+|..+...|.+.|++++|+..|+++.+.. +.+..++..+..++...|++++|.+.++++.+. .+.+..++..+.
T Consensus 236 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~ 312 (388)
T 1w3b_A 236 HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLA 312 (388)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHH
Confidence 67889999999999999999999999998853 224678888899999999999999999999874 466788999999
Q ss_pred HHHhHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCC
Q 009066 317 DLLGRAGKLVEAVDLIKKM-PFKP-QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKK 391 (545)
Q Consensus 317 ~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~ 391 (545)
..|.+.|++++|.+.++++ ...| +..+|..+...+.+.|++++|...+++++++.|+... +|..++.++...|+
T Consensus 313 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~-a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 313 NIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFAD-AYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHH-HHHHHHHHHHHTCC
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH-HHHhHHHHHHHccC
Confidence 9999999999999999987 4445 4678999999999999999999999999999999887 89999888877663
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=5.1e-26 Score=226.82 Aligned_cols=348 Identities=15% Similarity=0.082 Sum_probs=302.7
Q ss_pred HHHHcCCCCHHHHHHHHhcCC--CC-CeehHHHHHHHHHhCCCHHHHHHHHhhCC---cCCHhHHHHHHHHHHHcCChHH
Q 009066 46 SCILLNSDDVVAAFDFFQRLP--IK-DTASWNTMISGFVQKKNMAKARDLFLAMP---EKNSVSWSAMISGYIECGQLDK 119 (545)
Q Consensus 46 ~~~~~~~g~~~~A~~~~~~m~--~~-d~~~~~~li~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~ 119 (545)
..+.+. |++++|.+.|+.+. .| +...+..+...+.+.|++++|...++... +.+..++..+...|.+.|++++
T Consensus 7 ~~~~~~-g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~ 85 (388)
T 1w3b_A 7 HREYQA-GDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHHH-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHC-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence 345667 99999999998876 34 55677778888999999999999998776 3467899999999999999999
Q ss_pred HHHHHhhCC--CC-CcccHHHHHHHhcchhhhccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 009066 120 AVELFKVAP--VK-SVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQ 196 (545)
Q Consensus 120 A~~~f~~~~--~~-~~~~~~~li~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~ 196 (545)
|.+.|+++. .| +..+|..+..++ ...|++++|++.|+++.+.. +.+...+..+...+...|++++|.+.+.
T Consensus 86 A~~~~~~al~~~p~~~~~~~~l~~~~-----~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 159 (388)
T 1w3b_A 86 AIEHYRHALRLKPDFIDGYINLAAAL-----VAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYL 159 (388)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHH-----HHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHcCcchHHHHHHHHHHH-----HHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 999999865 23 456799999999 99999999999999998753 2345567777888899999999999999
Q ss_pred HHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH
Q 009066 197 LVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR---KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDS 273 (545)
Q Consensus 197 ~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 273 (545)
.+++.. +.+..++..+...|.+.|++++|...|+++.+ .+...|..+...+...|++++|+..|++..... +.+.
T Consensus 160 ~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~ 237 (388)
T 1w3b_A 160 KAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHA 237 (388)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCH
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCH
Confidence 998874 45678899999999999999999999999864 356789999999999999999999999998753 2257
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhC-C-CCCCHhHHHHHHHHH
Q 009066 274 ITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-P-FKPQPAIFGTLLSAC 351 (545)
Q Consensus 274 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~-~~p~~~~~~~li~~~ 351 (545)
.++..+..++...|++++|.+.|+++.+. .+.++..|..+...|.+.|++++|.+.|+++ . .+++..+|..+...+
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 315 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHH
Confidence 78889999999999999999999999863 3456789999999999999999999999988 2 235778999999999
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchHHHHHHHHhhhC
Q 009066 352 RVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKEN 405 (545)
Q Consensus 352 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 405 (545)
...|++++|...++++++..|++.. ++..++.+|.+.|++++|.+.++++.+.
T Consensus 316 ~~~g~~~~A~~~~~~al~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 316 REQGNIEEAVRLYRKALEVFPEFAA-AHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HTTTCHHHHHHHHHHHTTSCTTCHH-HHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHcCCHHHHHHHHHHHHhcCCCcHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 9999999999999999999999888 9999999999999999999999998763
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=5.2e-28 Score=246.44 Aligned_cols=184 Identities=12% Similarity=0.161 Sum_probs=169.8
Q ss_pred ccHHHHHHHhcchhhhccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC---------cHHHHHHHHHHHHhCCC
Q 009066 133 VAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLS---------SLQLGKQVHQLVFKSPL 203 (545)
Q Consensus 133 ~~~~~li~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~---------~~~~a~~~~~~~~~~g~ 203 (545)
..++.+|.+| .+.|+.++|+++|++|.+.|++||..||+++|.+|+..+ .++.|.++|++|.+.|+
T Consensus 27 ~~l~~~id~c-----~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~ 101 (501)
T 4g26_A 27 ALLKQKLDMC-----SKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKV 101 (501)
T ss_dssp HHHHHHHHHT-----TTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHH-----HhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCC
Confidence 4578889999 999999999999999999999999999999999998654 47889999999999999
Q ss_pred CCCcccHHHHHHHHHhcCCHHHHHHHHHhccC----CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 009066 204 CKDTTALTPLISMYCKCGDLEDACKLFLEIQR----KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVAL 279 (545)
Q Consensus 204 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 279 (545)
.||..+|++||.+|++.|++++|.++|++|.+ ||..+||++|.+|++.|+.++|.++|++|.+.|+.||..||++|
T Consensus 102 ~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~L 181 (501)
T 4g26_A 102 VPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAAL 181 (501)
T ss_dssp CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 99999999999999999999999999999974 79999999999999999999999999999999999999999999
Q ss_pred HHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHc
Q 009066 280 LLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRA 322 (545)
Q Consensus 280 l~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 322 (545)
|.+|++.|++++|.+++++|.+. +..|+..||+.+++.|...
T Consensus 182 i~~~~~~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 182 LKVSMDTKNADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHSH
T ss_pred HHHHhhCCCHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999999876 9999999999999988753
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=1.3e-27 Score=243.45 Aligned_cols=200 Identities=12% Similarity=0.114 Sum_probs=172.4
Q ss_pred HHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCC---------H
Q 009066 154 EDGLKLLRMMIGLGIRPNA-SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGD---------L 223 (545)
Q Consensus 154 ~~A~~~~~~m~~~~~~pd~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~---------~ 223 (545)
..+..+.+++.+.++.+.+ ..++.+|.+|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 3456677788777766544 46888999999999999999999999999999999999999999998765 7
Q ss_pred HHHHHHHHhcc----CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHh
Q 009066 224 EDACKLFLEIQ----RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSM 299 (545)
Q Consensus 224 ~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 299 (545)
+.|.++|++|. .||..+||+||.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 88999999997 47999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhC---CCCCCHhHHHHHHHHHHhc
Q 009066 300 VNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM---PFKPQPAIFGTLLSACRVH 354 (545)
Q Consensus 300 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~li~~~~~~ 354 (545)
.+. |+.||..+|++|+++|++.|++++|.+++++| +..|+..||+.++..|+..
T Consensus 167 ~~~-G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 167 VES-EVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHT-TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred Hhc-CCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 876 99999999999999999999999999999999 7889999999999988764
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=3.1e-23 Score=214.35 Aligned_cols=390 Identities=11% Similarity=-0.006 Sum_probs=310.3
Q ss_pred ccHHHHHHHHHHhCCCChHHHHHHHccCC--CCChhhHHHHHHHHHcCCCCHHHHHHHHhcCC---CCCeehHHHHHHHH
Q 009066 6 TVNWNSVLAGFAKQRGKLKDAQELFDKIP--QPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP---IKDTASWNTMISGF 80 (545)
Q Consensus 6 ~~~~~~li~~~~~~g~~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~~g~~~~A~~~~~~m~---~~d~~~~~~li~~~ 80 (545)
...+..+...|.+.|+ +++|...|+++. .||...|..+...+.+. |++++|+..|+++. +.+..+|..+..+|
T Consensus 6 a~~~~~~g~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKK-YDDAIKYYNWALELKEDPVFYSNLSACYVSV-GDLKKVVEMSTKALELKPDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcc-HHHHHHHHHHHHhcCccHHHHHhHHHHHHHH-hhHHHHHHHHHHHhccChHHHHHHHHHHHHH
Confidence 3456677888999999 999999999987 58988999999999999 99999999999877 44567899999999
Q ss_pred HhCCCHHHHHHHHhhCCc---CCHhHHHHHHHHHHHcCChHHHHHHHh--------------------------------
Q 009066 81 VQKKNMAKARDLFLAMPE---KNSVSWSAMISGYIECGQLDKAVELFK-------------------------------- 125 (545)
Q Consensus 81 ~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~f~-------------------------------- 125 (545)
.+.|++++|...|+++.. .+......++..+.+......+.+.+.
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 999999999999998763 233333444444433222222222221
Q ss_pred ------hCC---------CC-CcccHHHHHHHhcchhhhccCChHHHHHHHHHHHh-----CCCCC--------CHHHHH
Q 009066 126 ------VAP---------VK-SVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIG-----LGIRP--------NASSLS 176 (545)
Q Consensus 126 ------~~~---------~~-~~~~~~~li~~~~~~g~~~~g~~~~A~~~~~~m~~-----~~~~p--------d~~t~~ 176 (545)
... .+ +...|......+ ....+.|++++|+..|+++.+ ..-.| +..++.
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSN--LYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE 241 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHH--HSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHH--HHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHH
Confidence 100 00 122233333333 000248999999999999987 32122 345777
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHHcCC
Q 009066 177 SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR---KDVVTWNAMISGYAQHGK 253 (545)
Q Consensus 177 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~ 253 (545)
.+...+...|++++|...++.+.+.... ..++..+...|...|++++|...|+++.+ .+...|..+...|...|+
T Consensus 242 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 319 (514)
T 2gw1_A 242 HTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQN 319 (514)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCC
Confidence 8888899999999999999999987643 78888999999999999999999998865 367789999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHH
Q 009066 254 GEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIK 333 (545)
Q Consensus 254 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 333 (545)
+++|+..|+++..... .+..++..+...+...|++++|...++.+.+. .+.+...+..+...|.+.|++++|...++
T Consensus 320 ~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 396 (514)
T 2gw1_A 320 YDQAGKDFDKAKELDP-ENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYD 396 (514)
T ss_dssp TTHHHHHHHHHHHTCS-SCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCh-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999999998643 35667888889999999999999999999874 34567889999999999999999999998
Q ss_pred hC----CCCCC----HhHHHHHHHHHHh---cCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchHHHHHHHHh
Q 009066 334 KM----PFKPQ----PAIFGTLLSACRV---HKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSM 402 (545)
Q Consensus 334 ~m----~~~p~----~~~~~~li~~~~~---~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 402 (545)
++ +..++ ...|..+...+.. .|++++|...++++++..|++.. ++..++.+|...|++++|...+++.
T Consensus 397 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~a 475 (514)
T 2gw1_A 397 LAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQ-AKIGLAQMKLQQEDIDEAITLFEES 475 (514)
T ss_dssp HHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHH-HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHH-HHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 87 22233 3489999999999 99999999999999999999887 9999999999999999999999998
Q ss_pred hhC
Q 009066 403 KEN 405 (545)
Q Consensus 403 ~~~ 405 (545)
.+.
T Consensus 476 ~~~ 478 (514)
T 2gw1_A 476 ADL 478 (514)
T ss_dssp HHH
T ss_pred HHh
Confidence 764
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.92 E-value=1.2e-22 Score=206.37 Aligned_cols=302 Identities=11% Similarity=0.076 Sum_probs=228.0
Q ss_pred eehHHHHHHHHHhCCCHHHHHHHHhhCCc---CCHhHHHHHHHHHHHcCChHHHHHHHhhCC---CCCcccHHHHHHHhc
Q 009066 70 TASWNTMISGFVQKKNMAKARDLFLAMPE---KNSVSWSAMISGYIECGQLDKAVELFKVAP---VKSVVAWTAMISGYM 143 (545)
Q Consensus 70 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~ 143 (545)
..+|..+...+.+.|++++|+.+|+++.. .+..++..+...|...|++++|...|+++. ..+..+|..+...|
T Consensus 26 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~- 104 (450)
T 2y4t_A 26 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLL- 104 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH-
Confidence 34555555566666666666666655542 345556666666666666666666665543 22345566666666
Q ss_pred chhhhccCChHHHHHHHHHHHhCCCCCCH----HHHHHH------------HHHHhccCcHHHHHHHHHHHHhCCCCCCc
Q 009066 144 KFGYVENSWAEDGLKLLRMMIGLGIRPNA----SSLSSV------------LLGCSHLSSLQLGKQVHQLVFKSPLCKDT 207 (545)
Q Consensus 144 ~~g~~~~g~~~~A~~~~~~m~~~~~~pd~----~t~~~l------------l~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 207 (545)
...|++++|++.|+++.+. .|+. ..+..+ ...+...|++++|...++.+.+.. +.+.
T Consensus 105 ----~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 177 (450)
T 2y4t_A 105 ----LKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDA 177 (450)
T ss_dssp ----HHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCH
T ss_pred ----HHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCh
Confidence 6666666666666666653 2332 333333 344778899999999999998764 4577
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-HHHHHH----
Q 009066 208 TALTPLISMYCKCGDLEDACKLFLEIQR---KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDS-ITFVAL---- 279 (545)
Q Consensus 208 ~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~l---- 279 (545)
.++..++.+|.+.|++++|.+.|+++.+ .+..+|..+...|...|++++|+..|+++... .|+. ..+..+
T Consensus 178 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~ 255 (450)
T 2y4t_A 178 ELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVK 255 (450)
T ss_dssp HHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHH
Confidence 8889999999999999999999998864 57889999999999999999999999999875 3443 333333
Q ss_pred --------HHHHHccCcHHHHHHHHHHhHHhcCCCCC-----HHHHHHHHHHHhHcCCHHHHHHHHHhC-CCCC-CHhHH
Q 009066 280 --------LLACNHAGLVDLGIQYFDSMVNDYGIAAK-----PDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKP-QPAIF 344 (545)
Q Consensus 280 --------l~a~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~ 344 (545)
..+|...|++++|...|+.+.+. .|+ ..++..++.+|.+.|++++|...++++ ...| +...|
T Consensus 256 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~ 332 (450)
T 2y4t_A 256 KLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNAL 332 (450)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHH
Confidence 78899999999999999999874 344 457899999999999999999999987 3345 67899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHH
Q 009066 345 GTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANI 385 (545)
Q Consensus 345 ~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~ 385 (545)
..+..+|...|++++|...++++++++|++.. ++..+..+
T Consensus 333 ~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~l~~~ 372 (450)
T 2y4t_A 333 KDRAEAYLIEEMYDEAIQDYETAQEHNENDQQ-IREGLEKA 372 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHH-HHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCcchHH-HHHHHHHH
Confidence 99999999999999999999999999999987 88888744
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.91 E-value=3.9e-22 Score=202.61 Aligned_cols=346 Identities=11% Similarity=0.029 Sum_probs=265.9
Q ss_pred ChhhHHHHHHHHHcCCCCHHHHHHHHhcCC---CCCeehHHHHHHHHHhCCCHHHHHHHHhhCCc---CCHhHHHHHHHH
Q 009066 37 DVVSYNIMLSCILLNSDDVVAAFDFFQRLP---IKDTASWNTMISGFVQKKNMAKARDLFLAMPE---KNSVSWSAMISG 110 (545)
Q Consensus 37 ~~~~~~~li~~~~~~~g~~~~A~~~~~~m~---~~d~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~ 110 (545)
+...|..+...+.+. |++++|+.+|+++. +.+..+|..+...|.+.|++++|...|+++.+ .+..++..+..+
T Consensus 25 ~~~~~~~~~~~~~~~-g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 103 (450)
T 2y4t_A 25 DVEKHLELGKKLLAA-GQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHL 103 (450)
T ss_dssp HHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 445677777788888 88888888888776 44667888888888888888888888888763 356788888888
Q ss_pred HHHcCChHHHHHHHhhCCCCC---c---ccHHHHHHH------------hcchhhhccCChHHHHHHHHHHHhCCCCCCH
Q 009066 111 YIECGQLDKAVELFKVAPVKS---V---VAWTAMISG------------YMKFGYVENSWAEDGLKLLRMMIGLGIRPNA 172 (545)
Q Consensus 111 ~~~~g~~~~A~~~f~~~~~~~---~---~~~~~li~~------------~~~~g~~~~g~~~~A~~~~~~m~~~~~~pd~ 172 (545)
|.+.|++++|.+.|+++...+ . ..|..++.. + ...|++++|+..|+++.+.. +.+.
T Consensus 104 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-----~~~~~~~~A~~~~~~~~~~~-~~~~ 177 (450)
T 2y4t_A 104 LLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNA-----FGSGDYTAAIAFLDKILEVC-VWDA 177 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHTCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHH-----HHcCCHHHHHHHHHHHHHhC-CCCh
Confidence 888888888888888765432 2 555555443 6 78899999999999998753 4477
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhccC--C-ChhhHHHH-----
Q 009066 173 SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR--K-DVVTWNAM----- 244 (545)
Q Consensus 173 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~-~~~~~~~l----- 244 (545)
..+..+..++...|++++|...+..+.+.. +.+..++..++.+|.+.|++++|...|+++.+ | +...+..+
T Consensus 178 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 256 (450)
T 2y4t_A 178 ELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKK 256 (450)
T ss_dssp HHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Confidence 788888999999999999999999988764 45678889999999999999999999998863 3 44455554
Q ss_pred -------HHHHHHcCChHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHH
Q 009066 245 -------ISGYAQHGKGEKALRLFDKMKDEGMKPD-----SITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHY 312 (545)
Q Consensus 245 -------i~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 312 (545)
...+...|++++|+..|+++... .|+ ...+..+..++.+.|++++|...++.+.+. .+.+...|
T Consensus 257 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~ 332 (450)
T 2y4t_A 257 LNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM--EPDNVNAL 332 (450)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHH
Confidence 78899999999999999999884 344 346778888999999999999999998764 24568899
Q ss_pred HHHHHHHhHcCCHHHHHHHHHhC-CCCCC-HhHHHHHHHH------------HHhcC-----CHHHHHHHHHH-HhcCCC
Q 009066 313 TCMVDLLGRAGKLVEAVDLIKKM-PFKPQ-PAIFGTLLSA------------CRVHK-----RLDLAEFAAMN-LFNLNP 372 (545)
Q Consensus 313 ~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~li~~------------~~~~g-----~~~~A~~~~~~-~~~~~p 372 (545)
..+..+|...|++++|...|+++ ...|+ ...+..+..+ |...| +.+++.+.+++ .++..|
T Consensus 333 ~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~p 412 (450)
T 2y4t_A 333 KDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHP 412 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCG
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999987 55564 4556665533 33334 56777888886 677777
Q ss_pred CCCc---------hhHHHHHHHHHHcCCchH
Q 009066 373 ANAA---------GCYVQLANIYAAMKKWDD 394 (545)
Q Consensus 373 ~~~~---------~~~~~l~~~~~~~g~~~~ 394 (545)
+... ..+..+..+|...|+.+.
T Consensus 413 d~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~ 443 (450)
T 2y4t_A 413 DNFQNEEEKKKAEKKFIDIAAAKEVLSDPEM 443 (450)
T ss_dssp GGCCSHHHHHHHHHHHHHHHHHHHHSSGGGG
T ss_pred CCCCCchHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 6532 134455555555555443
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.89 E-value=1.4e-21 Score=203.24 Aligned_cols=389 Identities=13% Similarity=0.074 Sum_probs=297.9
Q ss_pred ccHHHHHHHHHHhCCCChHHHHHHHccCC--C-CChhhHHHHHHHHHcCCCCHHHHHHHHhcCC---CCCeehHHHHHHH
Q 009066 6 TVNWNSVLAGFAKQRGKLKDAQELFDKIP--Q-PDVVSYNIMLSCILLNSDDVVAAFDFFQRLP---IKDTASWNTMISG 79 (545)
Q Consensus 6 ~~~~~~li~~~~~~g~~~~~A~~~f~~~~--~-~~~~~~~~li~~~~~~~g~~~~A~~~~~~m~---~~d~~~~~~li~~ 79 (545)
...+..+...|.+.|+ +++|.+.|+++. . .+...|..+...+.+. |++++|++.|+++. +.+..+|..+...
T Consensus 25 a~~~~~~g~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKN-FNEAIKYYQYAIELDPNEPVFYSNISACYIST-GDLEKVIEFTTKALEIKPDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTC-CC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcc-HHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 3456778889999999 999999999876 3 4567788888888888 99999999999887 4567789999999
Q ss_pred HHhCCCHHHHHHHHhhCCcCCHhHHHHHHHHHHHcCChHHHHHHHhhCCCC-----------------------------
Q 009066 80 FVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVK----------------------------- 130 (545)
Q Consensus 80 ~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~----------------------------- 130 (545)
+...|++++|...|+.+ ..++......+..+...+...+|...++.+...
T Consensus 103 ~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVS 181 (537)
T ss_dssp HHHHTCHHHHHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHH
Confidence 99999999999999744 333333333444555555556666666554321
Q ss_pred --------Ccc---cHHHHHHHhcchh---hhccCChHHHHHHHHHHHhCCCCCC--------HHHHHHHHHHHhccCcH
Q 009066 131 --------SVV---AWTAMISGYMKFG---YVENSWAEDGLKLLRMMIGLGIRPN--------ASSLSSVLLGCSHLSSL 188 (545)
Q Consensus 131 --------~~~---~~~~li~~~~~~g---~~~~g~~~~A~~~~~~m~~~~~~pd--------~~t~~~ll~~~~~~~~~ 188 (545)
+.. .+..+...+...+ ....|++++|+.+|+++.+. .|+ ..++..+...+...|++
T Consensus 182 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~ 259 (537)
T 3fp2_A 182 SVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA--NTVDDPLRENAALALCYTGIFHFLKNNL 259 (537)
T ss_dssp TSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--CCCcchhhHHHHHHHHHHHHHHHhcccH
Confidence 111 2222222220000 01124788999999999875 344 22466666778889999
Q ss_pred HHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHHH
Q 009066 189 QLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR---KDVVTWNAMISGYAQHGKGEKALRLFDKMK 265 (545)
Q Consensus 189 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 265 (545)
++|...+..+.+.. |+..++..+...|...|++++|...|+++.+ .+..+|..+...|...|++++|+..|+++.
T Consensus 260 ~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 337 (537)
T 3fp2_A 260 LDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQ 337 (537)
T ss_dssp HHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 99999999999875 4477888899999999999999999998864 467889999999999999999999999999
Q ss_pred HcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhC----CCCC--
Q 009066 266 DEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM----PFKP-- 339 (545)
Q Consensus 266 ~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p-- 339 (545)
.... .+...+..+..++...|++++|...++.+.+. .+.+...+..+...|...|++++|.+.|+++ +..+
T Consensus 338 ~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 414 (537)
T 3fp2_A 338 SLNP-ENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKI 414 (537)
T ss_dssp HHCT-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSC
T ss_pred HhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhh
Confidence 8642 24567888889999999999999999999874 3556788999999999999999999999886 1111
Q ss_pred --CHhHHHHHHHHHHhc----------CCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchHHHHHHHHhhhC
Q 009066 340 --QPAIFGTLLSACRVH----------KRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKEN 405 (545)
Q Consensus 340 --~~~~~~~li~~~~~~----------g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 405 (545)
....+..+...+... |++++|...++++++.+|++.. ++..++.+|...|++++|.+.+++..+.
T Consensus 415 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 415 HVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQ-AKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp SSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHH-HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 223345556677777 9999999999999999999987 9999999999999999999999998764
No 11
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.87 E-value=9.6e-21 Score=195.57 Aligned_cols=367 Identities=14% Similarity=0.024 Sum_probs=290.3
Q ss_pred CCccHHHHHHHHHHhCCCChHHHHHHHccCC--CC-ChhhHHHHHHHHHcCCCCHHHHHHHHhcCC---CCCeehHHHHH
Q 009066 4 KTTVNWNSVLAGFAKQRGKLKDAQELFDKIP--QP-DVVSYNIMLSCILLNSDDVVAAFDFFQRLP---IKDTASWNTMI 77 (545)
Q Consensus 4 ~~~~~~~~li~~~~~~g~~~~~A~~~f~~~~--~~-~~~~~~~li~~~~~~~g~~~~A~~~~~~m~---~~d~~~~~~li 77 (545)
||+.++..+..+|.+.|+ +++|...|+.+. .| +...|..+...+... |++++|+..|+++. +++......++
T Consensus 37 p~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 114 (514)
T 2gw1_A 37 EDPVFYSNLSACYVSVGD-LKKVVEMSTKALELKPDYSKVLLRRASANEGL-GKFADAMFDLSVLSLNGDFNDASIEPML 114 (514)
T ss_dssp CCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHSSSCCGGGTHHHH
T ss_pred ccHHHHHhHHHHHHHHhh-HHHHHHHHHHHhccChHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHhcCCCccchHHHHH
Confidence 578899999999999999 999999999876 34 456788888899999 99999999999876 33444444555
Q ss_pred HHHHhCCCHHHHHHHHh--------------------------------------hCC----------cCCHhHHHHHHH
Q 009066 78 SGFVQKKNMAKARDLFL--------------------------------------AMP----------EKNSVSWSAMIS 109 (545)
Q Consensus 78 ~~~~~~g~~~~a~~~~~--------------------------------------~~~----------~~~~~~~~~li~ 109 (545)
..+........+.+.+. ... ..+...+..+..
T Consensus 115 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (514)
T 2gw1_A 115 ERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGL 194 (514)
T ss_dssp HHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHH
Confidence 44443222222222221 110 112444555555
Q ss_pred HHHH---cCChHHHHHHHhhCCC----------------C-CcccHHHHHHHhcchhhhccCChHHHHHHHHHHHhCCCC
Q 009066 110 GYIE---CGQLDKAVELFKVAPV----------------K-SVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIR 169 (545)
Q Consensus 110 ~~~~---~g~~~~A~~~f~~~~~----------------~-~~~~~~~li~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~ 169 (545)
.+.. .|++++|...|+++.. + +..+|..+...+ ...|++++|+..|+++.+..
T Consensus 195 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~A~~~~~~~l~~~-- 267 (514)
T 2gw1_A 195 SNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFK-----FLKNDPLGAHEDIKKAIELF-- 267 (514)
T ss_dssp HHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHH-----HHSSCHHHHHHHHHHHHHHC--
T ss_pred HHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHH-----HHCCCHHHHHHHHHHHHhhC--
Confidence 5554 8999999999987543 1 245777888888 99999999999999998864
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHH
Q 009066 170 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR---KDVVTWNAMIS 246 (545)
Q Consensus 170 pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~ 246 (545)
|+...+..+..++...|++++|...++.+.+.. +.+..++..+...|...|++++|...|+++.+ .+...|..+..
T Consensus 268 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 346 (514)
T 2gw1_A 268 PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLAC 346 (514)
T ss_dssp CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHH
Confidence 447788889999999999999999999999875 45677889999999999999999999998753 46788999999
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCC----HHHHHHHHHHHhH-
Q 009066 247 GYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK----PDHYTCMVDLLGR- 321 (545)
Q Consensus 247 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~- 321 (545)
.|...|++++|+..|+++.+.. +.+..++..+...+...|++++|...++.+.+...-.++ ...+..+...|.+
T Consensus 347 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~ 425 (514)
T 2gw1_A 347 LAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRN 425 (514)
T ss_dssp HTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTS
T ss_pred HHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999998753 235677888889999999999999999998764322232 4488999999999
Q ss_pred --cCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHH
Q 009066 322 --AGKLVEAVDLIKKM-PFKP-QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQL 382 (545)
Q Consensus 322 --~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l 382 (545)
.|++++|...++++ ...| +..+|..+...+...|++++|...++++++++|++.. .+..+
T Consensus 426 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~-~~~~~ 489 (514)
T 2gw1_A 426 PTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEE-KLQAI 489 (514)
T ss_dssp CCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHH-HHHHH
T ss_pred hhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHH-HHHHH
Confidence 99999999999987 2234 5678899999999999999999999999999998865 44444
No 12
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.85 E-value=1.2e-18 Score=170.80 Aligned_cols=301 Identities=11% Similarity=0.083 Sum_probs=183.2
Q ss_pred ehHHHHHHHHHhCCCHHHHHHHHhhCCc---CCHhHHHHHHHHHHHcCChHHHHHHHhhCC---CCCcccHHHHHHHhcc
Q 009066 71 ASWNTMISGFVQKKNMAKARDLFLAMPE---KNSVSWSAMISGYIECGQLDKAVELFKVAP---VKSVVAWTAMISGYMK 144 (545)
Q Consensus 71 ~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~ 144 (545)
..|..+...+.+.|++++|...|+++.. .+..++..+...|...|++++|...|++.. ..+...|..+...+
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~-- 81 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL-- 81 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH--
Confidence 3455566666666666666666666552 345566666666666666666666665543 22345566666666
Q ss_pred hhhhccCChHHHHHHHHHHHhCCCCC----CHHHHHHHHHHHhccCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhc
Q 009066 145 FGYVENSWAEDGLKLLRMMIGLGIRP----NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKC 220 (545)
Q Consensus 145 ~g~~~~g~~~~A~~~~~~m~~~~~~p----d~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 220 (545)
...|++++|+..|+++.+. .| +...+..+.... .. ..+..+...+...
T Consensus 82 ---~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~-------~~----------------~~~~~~a~~~~~~ 133 (359)
T 3ieg_A 82 ---LKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKAD-------EM----------------QRLRSQALDAFDG 133 (359)
T ss_dssp ---HHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHH-------HH----------------HHHHHHHHHHHHT
T ss_pred ---HHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHH-------HH----------------HHHHHHHHHHHHc
Confidence 6666666666666666653 23 222222221000 00 0011224566666
Q ss_pred CCHHHHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHH
Q 009066 221 GDLEDACKLFLEIQR---KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFD 297 (545)
Q Consensus 221 g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 297 (545)
|++++|.+.|+++.+ .+...|..+...+...|++++|+..++++.... +.+..++..+...+...|++++|...++
T Consensus 134 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~ 212 (359)
T 3ieg_A 134 ADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVR 212 (359)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 777777776666542 355566666666777777777777777766542 2345566666666667777777777776
Q ss_pred HhHHhcCCCCCHHHHH------------HHHHHHhHcCCHHHHHHHHHhC-CCCCC-H----hHHHHHHHHHHhcCCHHH
Q 009066 298 SMVNDYGIAAKPDHYT------------CMVDLLGRAGKLVEAVDLIKKM-PFKPQ-P----AIFGTLLSACRVHKRLDL 359 (545)
Q Consensus 298 ~~~~~~~~~~~~~~~~------------~li~~~~~~g~~~~A~~~~~~m-~~~p~-~----~~~~~li~~~~~~g~~~~ 359 (545)
...+.. +.+...+. .+...+.+.|++++|...+++. ...|+ . ..+..+...+...|++++
T Consensus 213 ~a~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 290 (359)
T 3ieg_A 213 ECLKLD--QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVE 290 (359)
T ss_dssp HHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhhC--ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHH
Confidence 666531 22222222 2356677788888888887766 22233 2 234456677778888888
Q ss_pred HHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchHHHHHHHHhhhC
Q 009066 360 AEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKEN 405 (545)
Q Consensus 360 A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 405 (545)
|...++++++.+|++.. ++..++.+|...|++++|.+.+++..+.
T Consensus 291 A~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 291 AIRICSEVLQMEPDNVN-ALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHHHHHHCTTCHH-HHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCcccHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 88888888888887776 7888888888888888888888877653
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.85 E-value=7.5e-19 Score=172.14 Aligned_cols=319 Identities=12% Similarity=0.057 Sum_probs=229.3
Q ss_pred ChhhHHHHHHHHHcCCCCHHHHHHHHhcCC---CCCeehHHHHHHHHHhCCCHHHHHHHHhhCCc---CCHhHHHHHHHH
Q 009066 37 DVVSYNIMLSCILLNSDDVVAAFDFFQRLP---IKDTASWNTMISGFVQKKNMAKARDLFLAMPE---KNSVSWSAMISG 110 (545)
Q Consensus 37 ~~~~~~~li~~~~~~~g~~~~A~~~~~~m~---~~d~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~ 110 (545)
|+..|..+...+... |++++|+..|+++. +.+..+|..+...+...|++++|...|+++.. .+..++..+...
T Consensus 2 ~~~~~~~~~~~~~~~-g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 2 DVEKHLELGKKLLAA-GQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 345677777888888 99999999999886 45677899999999999999999999998873 467889999999
Q ss_pred HHHcCChHHHHHHHhhCCCCCc------ccHHHHHHHhcchhhhccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 009066 111 YIECGQLDKAVELFKVAPVKSV------VAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSH 184 (545)
Q Consensus 111 ~~~~g~~~~A~~~f~~~~~~~~------~~~~~li~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~ 184 (545)
|.+.|++++|...|++....++ ..|..+...+ . ...+..+...+..
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~------------~----------------~~~~~~~a~~~~~ 132 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKAD------------E----------------MQRLRSQALDAFD 132 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHH------------H----------------HHHHHHHHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHH------------H----------------HHHHHHHHHHHHH
Confidence 9999999999999998754333 2333332111 0 0112223344555
Q ss_pred cCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHH
Q 009066 185 LSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR---KDVVTWNAMISGYAQHGKGEKALRLF 261 (545)
Q Consensus 185 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~ 261 (545)
.|++++|...+..+.+.. +.+..++..+...|.+.|++++|...|+++.+ .+..+|..+...|...|++++|+..|
T Consensus 133 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 211 (359)
T 3ieg_A 133 GADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEV 211 (359)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 566666666666655543 33445566666666667777777777666553 35566777777777777777777777
Q ss_pred HHHHHcCCCCCHHHHH------------HHHHHHHccCcHHHHHHHHHHhHHhcCCCCCH----HHHHHHHHHHhHcCCH
Q 009066 262 DKMKDEGMKPDSITFV------------ALLLACNHAGLVDLGIQYFDSMVNDYGIAAKP----DHYTCMVDLLGRAGKL 325 (545)
Q Consensus 262 ~~m~~~g~~p~~~t~~------------~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~ 325 (545)
++..+.... +...+. .+...+...|++++|...++.+.+.. +.+. ..+..+...|...|++
T Consensus 212 ~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~~ 288 (359)
T 3ieg_A 212 RECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFSKDEKP 288 (359)
T ss_dssp HHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHhhCcc-chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHccCH
Confidence 777664211 222221 23556788899999999998887642 2223 3355688899999999
Q ss_pred HHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHc
Q 009066 326 VEAVDLIKKM-PFKP-QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAM 389 (545)
Q Consensus 326 ~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~ 389 (545)
++|.+.+++. ...| +..+|..+...+...|++++|...++++++++|++.. .+..|..++...
T Consensus 289 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~-~~~~l~~~~~~~ 353 (359)
T 3ieg_A 289 VEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQ-IREGLEKAQRLL 353 (359)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChH-HHHHHHHHHHHH
Confidence 9999999887 3234 6788999999999999999999999999999999877 777777666543
No 14
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.83 E-value=2.9e-18 Score=178.05 Aligned_cols=362 Identities=15% Similarity=0.038 Sum_probs=275.9
Q ss_pred CCCCccHHHHHHHHHHhCCCChHHHHHHHccCC--CC-ChhhHHHHHHHHHcCCCCHHHHHHHHhcCC-CCCeehHHHHH
Q 009066 2 NVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIP--QP-DVVSYNIMLSCILLNSDDVVAAFDFFQRLP-IKDTASWNTMI 77 (545)
Q Consensus 2 ~~~~~~~~~~li~~~~~~g~~~~~A~~~f~~~~--~~-~~~~~~~li~~~~~~~g~~~~A~~~~~~m~-~~d~~~~~~li 77 (545)
+|.++.++..+...|.+.|+ +++|.+.|+++. .| +...|..+...+... |++++|+..|+.+. .|+ ..+..+
T Consensus 55 ~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~~~~~~~--~~~~~~ 130 (537)
T 3fp2_A 55 DPNEPVFYSNISACYISTGD-LEKVIEFTTKALEIKPDHSKALLRRASANESL-GNFTDAMFDLSVLSLNGD--FDGASI 130 (537)
T ss_dssp CTTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-TCHHHHHHHHHHHC------------
T ss_pred CCCCcHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHc-CCHHHHHHHHHHHhcCCC--CChHHH
Confidence 46678899999999999999 999999999876 34 456788888888888 99999999997553 222 222223
Q ss_pred HHHHhCCCHHHHHHHHhhCCc-------------------------------------CCHh---HHHHHHHHHHH----
Q 009066 78 SGFVQKKNMAKARDLFLAMPE-------------------------------------KNSV---SWSAMISGYIE---- 113 (545)
Q Consensus 78 ~~~~~~g~~~~a~~~~~~~~~-------------------------------------~~~~---~~~~li~~~~~---- 113 (545)
..+...+...+|...++.+.. .+.. ....+...+..
T Consensus 131 ~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 210 (537)
T 3fp2_A 131 EPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEG 210 (537)
T ss_dssp -CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhh
Confidence 334444445556666655542 1111 33333333332
Q ss_pred ----cCChHHHHHHHhhCCCCCc---c-------cHHHHHHHhcchhhhccCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 009066 114 ----CGQLDKAVELFKVAPVKSV---V-------AWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVL 179 (545)
Q Consensus 114 ----~g~~~~A~~~f~~~~~~~~---~-------~~~~li~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll 179 (545)
.|++++|..+|+++...++ . +|..+...+ ...|++++|+..|+++.+. .|+...+..+.
T Consensus 211 ~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~-----~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~ 283 (537)
T 3fp2_A 211 YLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFH-----FLKNNLLDAQVLLQESINL--HPTPNSYIFLA 283 (537)
T ss_dssp HHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHH-----HHTTCHHHHHHHHHHHHHH--CCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHH-----HhcccHHHHHHHHHHHHhc--CCCchHHHHHH
Confidence 2588999999988764332 2 355555666 8899999999999999985 56678888999
Q ss_pred HHHhccCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHHcCChHH
Q 009066 180 LGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR---KDVVTWNAMISGYAQHGKGEK 256 (545)
Q Consensus 180 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~ 256 (545)
..+...|++++|...+..+.+.. +.+..++..+...|...|++++|...|+++.+ .+...|..+...|...|++++
T Consensus 284 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~ 362 (537)
T 3fp2_A 284 LTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTE 362 (537)
T ss_dssp HHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999999998875 45678899999999999999999999998863 467889999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHhHHhcC----CCCCHHHHHHHHHHHhHc----------
Q 009066 257 ALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYG----IAAKPDHYTCMVDLLGRA---------- 322 (545)
Q Consensus 257 A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~~~li~~~~~~---------- 322 (545)
|+..|+++.+.. +.+...+..+...+...|++++|...++.+.+... .......+..+...|.+.
T Consensus 363 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 441 (537)
T 3fp2_A 363 SEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDE 441 (537)
T ss_dssp HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCH
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhH
Confidence 999999999863 33566788888999999999999999999876421 111223345566778888
Q ss_pred CCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCc
Q 009066 323 GKLVEAVDLIKKM-PFKP-QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAA 376 (545)
Q Consensus 323 g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 376 (545)
|++++|...|++. ...| +...|..+...+...|++++|...+++++++.|+...
T Consensus 442 ~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 497 (537)
T 3fp2_A 442 EKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDE 497 (537)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHH
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence 9999999999987 2234 5688999999999999999999999999999998764
No 15
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.83 E-value=2.6e-19 Score=174.23 Aligned_cols=308 Identities=13% Similarity=0.105 Sum_probs=142.2
Q ss_pred hCCCChHHHHHHHccCCCCChhhHHHHHHHHHcCCCCHHHHHHHHhcCCCCCeehHHHHHHHHHhCCCHHHHHHHHhhCC
Q 009066 18 KQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMP 97 (545)
Q Consensus 18 ~~g~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~a~~~~~~~~ 97 (545)
+.|+ +++|.+.++++++|+ +|..+..++.+. |++++|++.|.+. +|..+|..++.++...|++++|+..++..+
T Consensus 15 ~~~~-ld~A~~fae~~~~~~--vWs~La~A~l~~-g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ar 88 (449)
T 1b89_A 15 HIGN-LDRAYEFAERCNEPA--VWSQLAKAQLQK-GMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMAR 88 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccC-HHHHHHHHHhCCChH--HHHHHHHHHHHc-CCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 5677 999999999997775 799999999999 9999999999764 577799999999999999999999877766
Q ss_pred c--CCHhHHHHHHHHHHHcCChHHHHHHHhhCCCCCcccHHHHHHHhcchhhhccCChHHHHHHHHHHHhCCCCCCHHHH
Q 009066 98 E--KNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSL 175 (545)
Q Consensus 98 ~--~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~pd~~t~ 175 (545)
+ +++.+.+.|+.+|.++|+++++.++|+. |+..+|+.+...| ...|++++|...|.++ ..|
T Consensus 89 k~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~-----~~~g~yeeA~~~Y~~a---------~n~ 151 (449)
T 1b89_A 89 KKARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRC-----YDEKMYDAAKLLYNNV---------SNF 151 (449)
T ss_dssp --------------------CHHHHTTTTTC---C---------------------CTTTHHHHHHHT---------TCH
T ss_pred HhCccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHH-----HHcCCHHHHHHHHHHh---------hhH
Confidence 3 4567889999999999999999888864 6777999999999 9999999999999976 368
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHHcCChH
Q 009066 176 SSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGE 255 (545)
Q Consensus 176 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~ 255 (545)
..+..++.+.|++++|.+.+..+ .++.+|..++.+|...|+++.|......+. .++.....++..|.+.|+++
T Consensus 152 ~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~e 224 (449)
T 1b89_A 152 GRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFE 224 (449)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHH
Confidence 88899999999999999999888 367889999999999999999987777654 44444556888899999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHH--ccCcHHHHHHHHHHhHHhcCCCC------CHHHHHHHHHHHhHcCCHHH
Q 009066 256 KALRLFDKMKDEGMKPDSITFVALLLACN--HAGLVDLGIQYFDSMVNDYGIAA------KPDHYTCMVDLLGRAGKLVE 327 (545)
Q Consensus 256 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~--~~g~~~~a~~~~~~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~ 327 (545)
+|+.+++..+... +-....|+.+.-+++ +.+++.+..+.|..- -+++| +...|..++-.|..-++++.
T Consensus 225 Eai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~---ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~ 300 (449)
T 1b89_A 225 ELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSR---VNIPKVLRAAEQAHLWAELVFLYDKYEEYDN 300 (449)
T ss_dssp HHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT---SCHHHHHHHHHTTTCHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH---hcCcHHHHHHHHHHHHHHHHHHHHhhchHHH
Confidence 9999999887543 334445555544444 445555666555422 24455 45678888999999999998
Q ss_pred HHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHH
Q 009066 328 AVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAE 361 (545)
Q Consensus 328 A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~A~ 361 (545)
|...+-+-+ |+..--..+.....+-.+.+.--
T Consensus 301 A~~tm~~h~--~~a~~~~~f~~~~~kv~n~elyY 332 (449)
T 1b89_A 301 AIITMMNHP--TDAWKEGQFKDIITKVANVELYY 332 (449)
T ss_dssp HHHHHHHST--TTTCCHHHHHHHHHHCSSTHHHH
T ss_pred HHHHHHhCC--hhhhhhHHHHHHHhchhHHHHHH
Confidence 887665543 33333333334444444444333
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.83 E-value=5.7e-18 Score=163.94 Aligned_cols=285 Identities=10% Similarity=0.018 Sum_probs=215.6
Q ss_pred CCHhHHHHHHHHHHHcCChHHHHHHHhhCC---CCCcccHHHHHHHhcchhhhccCChHHHHHHHHHHHhCCCCCCHHHH
Q 009066 99 KNSVSWSAMISGYIECGQLDKAVELFKVAP---VKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSL 175 (545)
Q Consensus 99 ~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~pd~~t~ 175 (545)
.++.++..+...+...|++++|.++|+++. ..+...+..++..+ ...|++++|+.+++++.+.. +.+...+
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~-----~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 93 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTL-----VELNKANELFYLSHKLVDLY-PSNPVSW 93 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHH-----HHHTCHHHHHHHHHHHHHHC-TTSTHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHH-----HHhhhHHHHHHHHHHHHHhC-cCCHHHH
Confidence 345556666666777777777777776654 22445666667777 77788888888888877643 3356677
Q ss_pred HHHHHHHhccC-cHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHHc
Q 009066 176 SSVLLGCSHLS-SLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR---KDVVTWNAMISGYAQH 251 (545)
Q Consensus 176 ~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~ 251 (545)
..+...+...| ++++|...++.+.+.. +.+...+..+...|...|++++|...|+++.+ .+...|..+...|...
T Consensus 94 ~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~ 172 (330)
T 3hym_B 94 FAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLT 172 (330)
T ss_dssp HHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 77777777788 7888888888887765 44566777888888888888888888887763 3456777788888888
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHhHHhcC-------CCCCHHHHHHHHHHHhHcCC
Q 009066 252 GKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYG-------IAAKPDHYTCMVDLLGRAGK 324 (545)
Q Consensus 252 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-------~~~~~~~~~~li~~~~~~g~ 324 (545)
|++++|+..|++..+.. +.+...+..+...+...|++++|...++...+... .+.....+..+...|.+.|+
T Consensus 173 ~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 251 (330)
T 3hym_B 173 NNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKK 251 (330)
T ss_dssp TCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcC
Confidence 89999999888888753 33567777888888888999999988888776321 13446788899999999999
Q ss_pred HHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHH-HHcCCc
Q 009066 325 LVEAVDLIKKM-PFKP-QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIY-AAMKKW 392 (545)
Q Consensus 325 ~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~-~~~g~~ 392 (545)
+++|...+++. ...| +...|..+...+...|++++|...++++++++|++.. ++..++.++ ...|+.
T Consensus 252 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 252 YAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTF-SVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHH-HHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchH-HHHHHHHHHHHHhCch
Confidence 99999999877 2223 5678899999999999999999999999999999887 888888887 445543
No 17
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.81 E-value=2.9e-18 Score=168.99 Aligned_cols=279 Identities=10% Similarity=0.012 Sum_probs=202.7
Q ss_pred HcCChHHHHH-HHhhCCC-------CCcccHHHHHHHhcchhhhccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 009066 113 ECGQLDKAVE-LFKVAPV-------KSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSH 184 (545)
Q Consensus 113 ~~g~~~~A~~-~f~~~~~-------~~~~~~~~li~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~ 184 (545)
..|++++|.+ .|++... .+...|..+...+ ...|++++|+..|+++.+.. +.+..++..+..++..
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-----~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 110 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRR-----LQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAE 110 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHH-----HHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHH-----HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 3456666666 5554321 1245566666677 77777777777777777653 3355666667777777
Q ss_pred cCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhccCC---ChhhHHH---------------HHH
Q 009066 185 LSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK---DVVTWNA---------------MIS 246 (545)
Q Consensus 185 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~---------------li~ 246 (545)
.|++++|...++.+++.. +.+..++..+...|...|++++|...|+++.+. +...+.. .+.
T Consensus 111 ~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (368)
T 1fch_A 111 NEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILG 189 (368)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTH
T ss_pred CcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHH
Confidence 777777777777776654 345666677777777777777777777766531 2222211 233
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCH
Q 009066 247 GYAQHGKGEKALRLFDKMKDEGMKP-DSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKL 325 (545)
Q Consensus 247 ~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 325 (545)
.+...|++++|+..|+++.+..... +..++..+...+...|++++|...++.+.+. .+.+...+..+...|.+.|++
T Consensus 190 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~ 267 (368)
T 1fch_A 190 SLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQS 267 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCH
T ss_pred HHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCH
Confidence 3448899999999999998853221 5788888999999999999999999998864 355678999999999999999
Q ss_pred HHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC-----------CchhHHHHHHHHHHcCCc
Q 009066 326 VEAVDLIKKM-PFKP-QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPAN-----------AAGCYVQLANIYAAMKKW 392 (545)
Q Consensus 326 ~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~-----------~~~~~~~l~~~~~~~g~~ 392 (545)
++|...|+++ ...| +...|..+...+...|++++|...+++++++.|++ .. +|..++.+|...|++
T Consensus 268 ~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~ 346 (368)
T 1fch_A 268 EEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSEN-IWSTLRLALSMLGQS 346 (368)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHH-HHHHHHHHHHHHTCG
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhH-HHHHHHHHHHHhCCh
Confidence 9999999987 3334 56889999999999999999999999999988876 45 899999999999999
Q ss_pred hHHHHHHHH
Q 009066 393 DDVARIRLS 401 (545)
Q Consensus 393 ~~a~~~~~~ 401 (545)
++|..++++
T Consensus 347 ~~A~~~~~~ 355 (368)
T 1fch_A 347 DAYGAADAR 355 (368)
T ss_dssp GGHHHHHTT
T ss_pred HhHHHhHHH
Confidence 999998763
No 18
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.80 E-value=2e-17 Score=160.14 Aligned_cols=265 Identities=12% Similarity=0.056 Sum_probs=229.1
Q ss_pred CCcccHHHHHHHhcchhhhccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhCCCCCCccc
Q 009066 130 KSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTA 209 (545)
Q Consensus 130 ~~~~~~~~li~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 209 (545)
.+...+..+...+ ...|++++|+++|+++.+.. +.+...+..++.++...|++++|..++..+.+.. +.+..+
T Consensus 20 ~~~~~~~~~a~~~-----~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 92 (330)
T 3hym_B 20 ENLDVVVSLAERH-----YYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVS 92 (330)
T ss_dssp CCCTTHHHHHHHH-----HHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHH
T ss_pred hhHHHHHHHHHHH-----HHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHH
Confidence 4667778888888 88999999999999998764 3355566677788899999999999999999865 456788
Q ss_pred HHHHHHHHHhcC-CHHHHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 009066 210 LTPLISMYCKCG-DLEDACKLFLEIQR---KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNH 285 (545)
Q Consensus 210 ~~~li~~y~~~g-~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 285 (545)
+..+...|...| ++++|...|++..+ .+...|..+...|...|++++|+..|+++.+.... +...+..+...+..
T Consensus 93 ~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~ 171 (330)
T 3hym_B 93 WFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGL 171 (330)
T ss_dssp HHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHH
Confidence 889999999999 99999999998875 35778999999999999999999999999986432 45666678889999
Q ss_pred cCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhC----C-------CCCCHhHHHHHHHHHHhc
Q 009066 286 AGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM----P-------FKPQPAIFGTLLSACRVH 354 (545)
Q Consensus 286 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~-------~~p~~~~~~~li~~~~~~ 354 (545)
.|++++|...++...+ ..+.+...+..+...|.+.|++++|...+++. + ...+..+|..+...+...
T Consensus 172 ~~~~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 249 (330)
T 3hym_B 172 TNNSKLAERFFSQALS--IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKL 249 (330)
T ss_dssp TTCHHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHT
T ss_pred HhhHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHh
Confidence 9999999999999986 33556889999999999999999999999876 1 023457899999999999
Q ss_pred CCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchHHHHHHHHhhhC
Q 009066 355 KRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKEN 405 (545)
Q Consensus 355 g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 405 (545)
|++++|...++++++..|++.. ++..++.+|...|++++|.+.+++..+.
T Consensus 250 g~~~~A~~~~~~a~~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 250 KKYAEALDYHRQALVLIPQNAS-TYSAIGYIHSLMGNFENAVDYFHTALGL 299 (330)
T ss_dssp TCHHHHHHHHHHHHHHSTTCSH-HHHHHHHHHHHHTCHHHHHHHHHTTTTT
T ss_pred cCHHHHHHHHHHHHhhCccchH-HHHHHHHHHHHhccHHHHHHHHHHHHcc
Confidence 9999999999999999999988 9999999999999999999999987653
No 19
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.79 E-value=8.8e-19 Score=170.59 Aligned_cols=304 Identities=16% Similarity=0.184 Sum_probs=152.9
Q ss_pred HcCCCCHHHHHHHHhcCCCCCeehHHHHHHHHHhCCCHHHHHHHHhhCCcCCHhHHHHHHHHHHHcCChHHHHHHHhhCC
Q 009066 49 LLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAP 128 (545)
Q Consensus 49 ~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~ 128 (545)
....|++++|.++++++..| .+|..|+.++.+.|++++|++.|.+. +|..+|..++..+...|++++|.+.++...
T Consensus 13 l~~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ar 88 (449)
T 1b89_A 13 IEHIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMAR 88 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 33438899999999999655 49999999999999999999999764 677799999999999999999999777655
Q ss_pred C--CCcccHHHHHHHhcchhhhccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhCCCCCC
Q 009066 129 V--KSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKD 206 (545)
Q Consensus 129 ~--~~~~~~~~li~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~ 206 (545)
+ +++.+.+.++.+| .+.|++.++.++++ .|+..+|..+...|...|.+++|+.+|..+
T Consensus 89 k~~~~~~i~~~Li~~Y-----~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-------- 148 (449)
T 1b89_A 89 KKARESYVETELIFAL-----AKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-------- 148 (449)
T ss_dssp -------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT--------
T ss_pred HhCccchhHHHHHHHH-----HHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh--------
Confidence 3 3557899999999 99999999988874 478889999999999999999999999977
Q ss_pred cccHHHHHHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 009066 207 TTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHA 286 (545)
Q Consensus 207 ~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 286 (545)
..|..|++++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+. +.|+. ...++..|.+.
T Consensus 149 -~n~~~LA~~L~~Lg~yq~AVea~~KA--~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~---~~ad~--l~~lv~~Yek~ 220 (449)
T 1b89_A 149 -SNFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLAQMCGLHIV---VHADE--LEELINYYQDR 220 (449)
T ss_dssp -TCHHHHHHHHHTTTCHHHHHHHHHHH--TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT---TCHHH--HHHHHHHHHHT
T ss_pred -hhHHHHHHHHHHhccHHHHHHHHHHc--CCchhHHHHHHHHHHcCcHHHHHHHHHHHH---hCHhh--HHHHHHHHHHC
Confidence 47999999999999999999999999 389999999999999999999976655422 44544 44688899999
Q ss_pred CcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhH--cCCHHHHHHHHHhC-CCCC------CHhHHHHHHHHHHhcCCH
Q 009066 287 GLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGR--AGKLVEAVDLIKKM-PFKP------QPAIFGTLLSACRVHKRL 357 (545)
Q Consensus 287 g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~m-~~~p------~~~~~~~li~~~~~~g~~ 357 (545)
|.++++..+++..... -+.....|+-|.-+|++ -+++.+.++.|..- .+.| +...|..+...|...+++
T Consensus 221 G~~eEai~lLe~aL~l--e~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~ 298 (449)
T 1b89_A 221 GYFEELITMLEAALGL--ERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEY 298 (449)
T ss_dssp TCHHHHHHHHHHHTTS--TTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCH
T ss_pred CCHHHHHHHHHHHhCC--cHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchH
Confidence 9999999999888742 24457778888777775 56788888887643 4333 567899999999999999
Q ss_pred HHHHHHHHHHhcC------------CCCCCchhHHHHHHHHH
Q 009066 358 DLAEFAAMNLFNL------------NPANAAGCYVQLANIYA 387 (545)
Q Consensus 358 ~~A~~~~~~~~~~------------~p~~~~~~~~~l~~~~~ 387 (545)
+.|.....+-... .|.+.. .|...+..|.
T Consensus 299 d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~e-lyYkai~fyl 339 (449)
T 1b89_A 299 DNAIITMMNHPTDAWKEGQFKDIITKVANVE-LYYRAIQFYL 339 (449)
T ss_dssp HHHHHHHHHSTTTTCCHHHHHHHHHHCSSTH-HHHHHHHHHH
T ss_pred HHHHHHHHhCChhhhhhHHHHHHHhchhHHH-HHHHHHHHHH
Confidence 9998765443322 455555 6666666665
No 20
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.79 E-value=2.6e-16 Score=163.23 Aligned_cols=395 Identities=8% Similarity=0.066 Sum_probs=286.2
Q ss_pred CCCCccHHHHHHHHHHhCCCChHHHHHHHccCCC--C-ChhhHHHHHHHHHcCCCCHHHHHHHHhcCC--CCCeehHHHH
Q 009066 2 NVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQ--P-DVVSYNIMLSCILLNSDDVVAAFDFFQRLP--IKDTASWNTM 76 (545)
Q Consensus 2 ~~~~~~~~~~li~~~~~~g~~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~~g~~~~A~~~~~~m~--~~d~~~~~~l 76 (545)
+|.|..+|..++. +.+.|+ +++|+.+|+++.+ | +...|...+..+.+. |++++|..+|++.. .|++..|...
T Consensus 9 ~P~~~~~w~~l~~-~~~~~~-~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~-~~~~~a~~~~~ral~~~p~~~lw~~~ 85 (530)
T 2ooe_A 9 NPYDLDAWSILIR-EAQNQP-IDKARKTYERLVAQFPSSGRFWKLYIEAEIKA-KNYDKVEKLFQRCLMKVLHIDLWKCY 85 (530)
T ss_dssp CTTCHHHHHHHHH-HHHSSC-HHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHTTTCCCHHHHHHH
T ss_pred CCCCHHHHHHHHH-HHHhCC-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhcCCChHHHHHH
Confidence 4678889999998 477888 9999999999873 4 445799999998888 99999999999987 4676777777
Q ss_pred HHH-HHhCCCHHHHHH----HHhhCC------cCCHhHHHHHHHHHHH---------cCChHHHHHHHhhCCC-CCc---
Q 009066 77 ISG-FVQKKNMAKARD----LFLAMP------EKNSVSWSAMISGYIE---------CGQLDKAVELFKVAPV-KSV--- 132 (545)
Q Consensus 77 i~~-~~~~g~~~~a~~----~~~~~~------~~~~~~~~~li~~~~~---------~g~~~~A~~~f~~~~~-~~~--- 132 (545)
+.. ....|+.++|.+ +|++.. ..+...|...+....+ .|+++.|+.+|++... |..
T Consensus 86 ~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~ 165 (530)
T 2ooe_A 86 LSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIE 165 (530)
T ss_dssp HHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHH
T ss_pred HHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHH
Confidence 753 345677776665 666543 2356788888887765 7899999999988654 221
Q ss_pred ccHHHHHHHhcchh--------hhccCChHHHHHHHHHHH------hCC---CCCCH--------HHHHHHHHHHhc---
Q 009066 133 VAWTAMISGYMKFG--------YVENSWAEDGLKLLRMMI------GLG---IRPNA--------SSLSSVLLGCSH--- 184 (545)
Q Consensus 133 ~~~~~li~~~~~~g--------~~~~g~~~~A~~~~~~m~------~~~---~~pd~--------~t~~~ll~~~~~--- 184 (545)
..|..........+ ....+++.+|..++.++. +.. ++|+. ..|...+.....
T Consensus 166 ~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~ 245 (530)
T 2ooe_A 166 QLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPL 245 (530)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCc
Confidence 23332222100000 012455677777776632 221 34442 344444433222
Q ss_pred -cCcH----HHHHHHHHHHHhCCCCCCcccHHHHHHHHHh-------cCCHH-------HHHHHHHhccC---C-ChhhH
Q 009066 185 -LSSL----QLGKQVHQLVFKSPLCKDTTALTPLISMYCK-------CGDLE-------DACKLFLEIQR---K-DVVTW 241 (545)
Q Consensus 185 -~~~~----~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~-------~g~~~-------~A~~~f~~~~~---~-~~~~~ 241 (545)
.++. +.+..+|+++++.. +.+..+|..++..+.+ .|+++ +|..+|++..+ | +...|
T Consensus 246 ~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~ 324 (530)
T 2ooe_A 246 RTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLY 324 (530)
T ss_dssp CCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHH
T ss_pred cCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHH
Confidence 1222 46778898888763 5567888888888876 69987 89999998874 3 57789
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHH-
Q 009066 242 NAMISGYAQHGKGEKALRLFDKMKDEGMKPDS--ITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDL- 318 (545)
Q Consensus 242 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~- 318 (545)
..++..+.+.|++++|..+|+++.+. .|+. ..|...+..+.+.|++++|+++|+...+. .+.+...|...+.+
T Consensus 325 ~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--~~~~~~~~~~~a~~~ 400 (530)
T 2ooe_A 325 FAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALME 400 (530)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--TTCCTHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--cCCchHHHHHHHHHH
Confidence 99999999999999999999999984 5542 47888888888899999999999998863 22234444433333
Q ss_pred HhHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC---chhHHHHHHHHHHcCCch
Q 009066 319 LGRAGKLVEAVDLIKKM-PFKP-QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANA---AGCYVQLANIYAAMKKWD 393 (545)
Q Consensus 319 ~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~~l~~~~~~~g~~~ 393 (545)
+...|+.++|..+|++. ...| +...|..++..+...|+.++|..+|++++...|.++ ...|...+......|+.+
T Consensus 401 ~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~ 480 (530)
T 2ooe_A 401 YYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLA 480 (530)
T ss_dssp HHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHH
T ss_pred HHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 34689999999999977 2234 578999999999999999999999999998766543 225666788888899999
Q ss_pred HHHHHHHHhhh
Q 009066 394 DVARIRLSMKE 404 (545)
Q Consensus 394 ~a~~~~~~m~~ 404 (545)
.+.++.+++.+
T Consensus 481 ~~~~~~~r~~~ 491 (530)
T 2ooe_A 481 SILKVEKRRFT 491 (530)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988865
No 21
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.79 E-value=5.1e-16 Score=159.41 Aligned_cols=348 Identities=11% Similarity=0.014 Sum_probs=181.4
Q ss_pred CccHHHHHHHHHHh----CCCChHHHHHHHccCCC-CChhhHHHHHHHHHc----CCCCHHHHHHHHhcCC-CCCeehHH
Q 009066 5 TTVNWNSVLAGFAK----QRGKLKDAQELFDKIPQ-PDVVSYNIMLSCILL----NSDDVVAAFDFFQRLP-IKDTASWN 74 (545)
Q Consensus 5 ~~~~~~~li~~~~~----~g~~~~~A~~~f~~~~~-~~~~~~~~li~~~~~----~~g~~~~A~~~~~~m~-~~d~~~~~ 74 (545)
++..+..|-..|.. .++ +++|...|++..+ .+...+..+-..|.. . +++++|+..|++.. ..+..++.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~-~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~-~~~~~A~~~~~~a~~~~~~~a~~ 115 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKD-LTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVP-QDYAQAVIWYKKAALKGLPQAQQ 115 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSC-CCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCC-CCHHHHHHHHHHHHHCCCHHHHH
Confidence 33444445555555 455 6666665554432 233344444444444 4 56666666665544 23444555
Q ss_pred HHHHHHHh----CCCHHHHHHHHhhCCcC-CHhHHHHHHHHHHH----cCChHHHHHHHhhCCC-CCcccHHHHHHHhcc
Q 009066 75 TMISGFVQ----KKNMAKARDLFLAMPEK-NSVSWSAMISGYIE----CGQLDKAVELFKVAPV-KSVVAWTAMISGYMK 144 (545)
Q Consensus 75 ~li~~~~~----~g~~~~a~~~~~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~ 144 (545)
.|...|.. .+++++|...|++..+. ++..+..|..+|.. .++.++|.+.|++..+ .+..++..+...|
T Consensus 116 ~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y-- 193 (490)
T 2xm6_A 116 NLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMY-- 193 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH--
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH--
Confidence 55555555 55666666666555432 34455555555555 5556666666654332 2344455555544
Q ss_pred hhhhc----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc----cCcHHHHHHHHHHHHhCCCCCCcccHHHHHHH
Q 009066 145 FGYVE----NSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSH----LSSLQLGKQVHQLVFKSPLCKDTTALTPLISM 216 (545)
Q Consensus 145 ~g~~~----~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 216 (545)
.. .++.++|++.|++..+.| +...+..+...+.. .+++++|...++...+.| +...+..|..+
T Consensus 194 ---~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 264 (490)
T 2xm6_A 194 ---SRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYI 264 (490)
T ss_dssp ---HHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHH
T ss_pred ---hcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHH
Confidence 33 555666666666555543 33444444444443 455666666666655543 23344445555
Q ss_pred HHh----cCCHHHHHHHHHhccC-CChhhHHHHHHHHHHc-----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 009066 217 YCK----CGDLEDACKLFLEIQR-KDVVTWNAMISGYAQH-----GKGEKALRLFDKMKDEGMKPDSITFVALLLACNHA 286 (545)
Q Consensus 217 y~~----~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 286 (545)
|.. .++.++|...|++..+ .+...+..+...|... +++++|+..|++..+.| +...+..+...+...
T Consensus 265 y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~ 341 (490)
T 2xm6_A 265 LEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRL 341 (490)
T ss_dssp HHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHS
T ss_pred HHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhC
Confidence 555 5566666666655543 2444555555555554 56666666666655543 233344444444443
Q ss_pred C---cHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhH----cCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHh----cC
Q 009066 287 G---LVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGR----AGKLVEAVDLIKKMPFKPQPAIFGTLLSACRV----HK 355 (545)
Q Consensus 287 g---~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~----~g 355 (545)
| +.++|.++|++..+. .++..+..|..+|.. .+++++|.+.|++.-...+...+..|...|.. .+
T Consensus 342 g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~ 417 (490)
T 2xm6_A 342 GSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVER 417 (490)
T ss_dssp CCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCC
T ss_pred CCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCC
Confidence 3 555666666555542 344555555555555 55666666666554111244555555555555 55
Q ss_pred CHHHHHHHHHHHhcCCC
Q 009066 356 RLDLAEFAAMNLFNLNP 372 (545)
Q Consensus 356 ~~~~A~~~~~~~~~~~p 372 (545)
+.++|...|+++.+.+|
T Consensus 418 d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 418 DYVQAWAWFDTASTNDM 434 (490)
T ss_dssp CHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHCCC
Confidence 66666666666655553
No 22
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.77 E-value=1.4e-17 Score=164.07 Aligned_cols=261 Identities=12% Similarity=0.028 Sum_probs=206.9
Q ss_pred CcccHHHHHHHhcchhhhccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhCCCCCCcccH
Q 009066 131 SVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTAL 210 (545)
Q Consensus 131 ~~~~~~~li~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 210 (545)
+...|..+...+ .+.|++++|++.|+++.+.. +.+..++..+..++...|++++|...++.+++.. +.+..++
T Consensus 64 ~~~~~~~~~~~~-----~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~ 136 (365)
T 4eqf_A 64 DWPGAFEEGLKR-----LKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKAL 136 (365)
T ss_dssp TCTTHHHHHHHH-----HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred chhHHHHHHHHH-----HHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHH
Confidence 455688888888 88888888888888888754 4467788888888888888888888888888764 4457778
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhccCCC-------------hhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-CCHHHH
Q 009066 211 TPLISMYCKCGDLEDACKLFLEIQRKD-------------VVTWNAMISGYAQHGKGEKALRLFDKMKDEGMK-PDSITF 276 (545)
Q Consensus 211 ~~li~~y~~~g~~~~A~~~f~~~~~~~-------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~ 276 (545)
..+...|.+.|++++|...|+++.+.+ ...+..+...+...|++++|+..|+++.+.... ++..++
T Consensus 137 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 216 (365)
T 4eqf_A 137 MALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQ 216 (365)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHH
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHH
Confidence 888888999999999999888876421 223344578888999999999999999886422 257888
Q ss_pred HHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhc
Q 009066 277 VALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKP-QPAIFGTLLSACRVH 354 (545)
Q Consensus 277 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~ 354 (545)
..+...+...|++++|...++++.+. .+.+..+|..+..+|.+.|++++|...|+++ ...| +..+|..+...|...
T Consensus 217 ~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 294 (365)
T 4eqf_A 217 TGLGVLFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINL 294 (365)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHC
Confidence 88999999999999999999998874 3556889999999999999999999999987 3335 578899999999999
Q ss_pred CCHHHHHHHHHHHhcCCCCC------------CchhHHHHHHHHHHcCCchHHHHHHHH
Q 009066 355 KRLDLAEFAAMNLFNLNPAN------------AAGCYVQLANIYAAMKKWDDVARIRLS 401 (545)
Q Consensus 355 g~~~~A~~~~~~~~~~~p~~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 401 (545)
|++++|...+++++++.|+. .. .+..|..++...|+.+.+.++.++
T Consensus 295 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 295 GAYREAVSNFLTALSLQRKSRNQQQVPHPAISGN-IWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp TCCHHHHHHHHHHHHHHHCC------------CH-HHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHhCcccCCCcccchhhhHHH-HHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999999999999887762 34 789999999999999988877654
No 23
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.76 E-value=2.8e-15 Score=153.82 Aligned_cols=350 Identities=16% Similarity=0.074 Sum_probs=292.9
Q ss_pred CCChhhHHHHHHHHHc----CCCCHHHHHHHHhcCC-CCCeehHHHHHHHHHh----CCCHHHHHHHHhhCCcC-CHhHH
Q 009066 35 QPDVVSYNIMLSCILL----NSDDVVAAFDFFQRLP-IKDTASWNTMISGFVQ----KKNMAKARDLFLAMPEK-NSVSW 104 (545)
Q Consensus 35 ~~~~~~~~~li~~~~~----~~g~~~~A~~~~~~m~-~~d~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~-~~~~~ 104 (545)
..+...+..+-..|.. . +++++|+..|++.. ..+..++..|...|.. .+++++|.+.|++..+. ++..+
T Consensus 36 ~g~~~a~~~lg~~y~~g~~~~-~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~ 114 (490)
T 2xm6_A 36 SGEAKAQLELGYRYFQGNETT-KDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQ 114 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCCC-cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 3466667777667776 6 89999999999876 4567788899999998 99999999999988754 67888
Q ss_pred HHHHHHHHH----cCChHHHHHHHhhCCCC-CcccHHHHHHHhcchhhhc----cCChHHHHHHHHHHHhCCCCCCHHHH
Q 009066 105 SAMISGYIE----CGQLDKAVELFKVAPVK-SVVAWTAMISGYMKFGYVE----NSWAEDGLKLLRMMIGLGIRPNASSL 175 (545)
Q Consensus 105 ~~li~~~~~----~g~~~~A~~~f~~~~~~-~~~~~~~li~~~~~~g~~~----~g~~~~A~~~~~~m~~~~~~pd~~t~ 175 (545)
..|..+|.. .+++++|.+.|++.... +..++..+...| .. .++.++|++.|++..+.| +...+
T Consensus 115 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y-----~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~ 186 (490)
T 2xm6_A 115 QNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAY-----FEGDGVTRDYVMAREWYSKAAEQG---NVWSC 186 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH-----HHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH-----HcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 899999998 89999999999876543 566777777777 55 789999999999999875 67778
Q ss_pred HHHHHHHhc----cCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh----cCCHHHHHHHHHhccC-CChhhHHHHHH
Q 009066 176 SSVLLGCSH----LSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCK----CGDLEDACKLFLEIQR-KDVVTWNAMIS 246 (545)
Q Consensus 176 ~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~----~g~~~~A~~~f~~~~~-~~~~~~~~li~ 246 (545)
..+...+.. .++.++|...++...+.| +...+..|..+|.. .+++++|...|++..+ .+..++..+..
T Consensus 187 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~ 263 (490)
T 2xm6_A 187 NQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGY 263 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 888888877 899999999999999876 45677788888987 8999999999998765 46778888888
Q ss_pred HHHH----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc-----CcHHHHHHHHHHhHHhcCCCCCHHHHHHHHH
Q 009066 247 GYAQ----HGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHA-----GLVDLGIQYFDSMVNDYGIAAKPDHYTCMVD 317 (545)
Q Consensus 247 ~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 317 (545)
.|.. .++.++|+..|++..+.| +...+..+...+... ++.++|..+++...+. .+...+..|..
T Consensus 264 ~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~ 336 (490)
T 2xm6_A 264 ILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ----GDATAQANLGA 336 (490)
T ss_dssp HHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT----TCHHHHHHHHH
T ss_pred HHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc----CCHHHHHHHHH
Confidence 8888 899999999999998764 455666677777776 8999999999998763 35677888899
Q ss_pred HHhHcC---CHHHHHHHHHhCCCCCCHhHHHHHHHHHHh----cCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHH--
Q 009066 318 LLGRAG---KLVEAVDLIKKMPFKPQPAIFGTLLSACRV----HKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAA-- 388 (545)
Q Consensus 318 ~~~~~g---~~~~A~~~~~~m~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~-- 388 (545)
+|...| ++++|.+.|++.-...+...+..|...|.. .+++++|...++++.+.++ +. ++..|+.+|..
T Consensus 337 ~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~--~~-a~~~Lg~~y~~g~ 413 (490)
T 2xm6_A 337 IYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGL--SA-AQVQLGEIYYYGL 413 (490)
T ss_dssp HHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC--HH-HHHHHHHHHHHTS
T ss_pred HHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCC--HH-HHHHHHHHHHcCC
Confidence 988877 889999999987223578889999999998 8999999999999988653 44 89999999999
Q ss_pred --cCCchHHHHHHHHhhhCC
Q 009066 389 --MKKWDDVARIRLSMKENN 406 (545)
Q Consensus 389 --~g~~~~a~~~~~~m~~~~ 406 (545)
.++.++|.+.+++..+.+
T Consensus 414 g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 414 GVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp SSCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHCC
Confidence 899999999999998765
No 24
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.76 E-value=5e-17 Score=160.07 Aligned_cols=285 Identities=14% Similarity=0.030 Sum_probs=164.5
Q ss_pred CCHHHHHH-HHhcCC--CC-----CeehHHHHHHHHHhCCCHHHHHHHHhhCCc---CCHhHHHHHHHHHHHcCChHHHH
Q 009066 53 DDVVAAFD-FFQRLP--IK-----DTASWNTMISGFVQKKNMAKARDLFLAMPE---KNSVSWSAMISGYIECGQLDKAV 121 (545)
Q Consensus 53 g~~~~A~~-~~~~m~--~~-----d~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 121 (545)
|++++|.. .|++.. .| +..++..+...+.+.|++++|...|+++.+ .+..++..+...|.+.|++++|.
T Consensus 39 ~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 118 (368)
T 1fch_A 39 SDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAI 118 (368)
T ss_dssp -------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHH
Confidence 67777777 776544 11 345677777777777788777777777653 34566777777777777777777
Q ss_pred HHHhhCC---CCCcccHHHHHHHhcchhhhccCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHH
Q 009066 122 ELFKVAP---VKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNAS-SLSSVLLGCSHLSSLQLGKQVHQL 197 (545)
Q Consensus 122 ~~f~~~~---~~~~~~~~~li~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~pd~~-t~~~ll~~~~~~~~~~~a~~~~~~ 197 (545)
+.|+++. ..+..+|..+...| ...|++++|++.|+++.... |+.. .+..+.. ...
T Consensus 119 ~~~~~al~~~~~~~~~~~~l~~~~-----~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~-------~~~------- 177 (368)
T 1fch_A 119 SALRRCLELKPDNQTALMALAVSF-----TNESLQRQACEILRDWLRYT--PAYAHLVTPAEE-------GAG------- 177 (368)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHH-----HHTTCHHHHHHHHHHHHHTS--TTTGGGCC---------------------
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHH-----HHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHH-------Hhh-------
Confidence 7776543 23456666677777 67777777777777776543 2211 1110000 000
Q ss_pred HHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhccC--C---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC
Q 009066 198 VFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR--K---DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPD 272 (545)
Q Consensus 198 ~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 272 (545)
.. .+ ...+..+...+ ..|++++|...|+++.+ | +..+|..+...|...|++++|+..|+++.... +.+
T Consensus 178 ~~----~~-~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~ 250 (368)
T 1fch_A 178 GA----GL-GPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PND 250 (368)
T ss_dssp -------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred hh----cc-cHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCC
Confidence 00 00 00001122222 56666666666666542 2 35566666677777777777777777766542 224
Q ss_pred HHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhC-CCCC------------
Q 009066 273 SITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKP------------ 339 (545)
Q Consensus 273 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p------------ 339 (545)
..++..+...+...|++++|...++.+.+. .+.+...+..+..+|.+.|++++|...|+++ ...|
T Consensus 251 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 328 (368)
T 1fch_A 251 YLLWNKLGATLANGNQSEEAVAAYRRALEL--QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAM 328 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccch
Confidence 556666666677777777777777766653 2344666677777777777777777776655 1111
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009066 340 QPAIFGTLLSACRVHKRLDLAEFAAMNL 367 (545)
Q Consensus 340 ~~~~~~~li~~~~~~g~~~~A~~~~~~~ 367 (545)
...+|..+..++...|++++|..++++.
T Consensus 329 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 329 SENIWSTLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp CHHHHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred hhHHHHHHHHHHHHhCChHhHHHhHHHH
Confidence 1467777777777777777777766543
No 25
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.76 E-value=5.2e-16 Score=147.42 Aligned_cols=267 Identities=10% Similarity=0.021 Sum_probs=190.4
Q ss_pred HcCChHHHHHHHhhCCCCCc----ccHHHHHHHhcchhhhccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcH
Q 009066 113 ECGQLDKAVELFKVAPVKSV----VAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSL 188 (545)
Q Consensus 113 ~~g~~~~A~~~f~~~~~~~~----~~~~~li~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~ 188 (545)
..|++..|...++.....++ .....+..+| ...|++++|+..++. . -+|+..++..+...+...++.
T Consensus 11 ~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~y-----i~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 11 YIGSYQQCINEAQRVKPSSPERDVERDVFLYRAY-----LAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHH-----HHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHH-----HHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcH
Confidence 34555555555555443322 1223344555 566666666654433 1 244555566666666666666
Q ss_pred HHHHHHHHHHHhCCC-CCCcccHHHHHHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 009066 189 QLGKQVHQLVFKSPL-CKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE 267 (545)
Q Consensus 189 ~~a~~~~~~~~~~g~-~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 267 (545)
++|.+.++.++..+. +.+..++..+..+|...|++++|.+.|++ ..+...+..++..|.+.|++++|...|+++.+.
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 159 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ 159 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Confidence 666666666666553 33445566677888899999999999988 567888999999999999999999999999886
Q ss_pred CCCCCHHHH---HHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhC-CCCC-CHh
Q 009066 268 GMKPDSITF---VALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKP-QPA 342 (545)
Q Consensus 268 g~~p~~~t~---~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~ 342 (545)
. |+.... ...+..+...|++++|..+|+++.+. .+.++..++.+..+|.+.|++++|.+.|++. ...| +..
T Consensus 160 ~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~ 235 (291)
T 3mkr_A 160 D--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPE 235 (291)
T ss_dssp C--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred C--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence 3 554321 12334445669999999999999885 4678899999999999999999999999987 3345 677
Q ss_pred HHHHHHHHHHhcCCHHH-HHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchHHHHHH
Q 009066 343 IFGTLLSACRVHKRLDL-AEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIR 399 (545)
Q Consensus 343 ~~~~li~~~~~~g~~~~-A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~ 399 (545)
+|..++..+...|+.++ +..+++++++++|+++. +.+...+.+.++++..-|
T Consensus 236 ~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~-----~~d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 236 TLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPF-----IKEYRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHH-----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChH-----HHHHHHHHHHHHHHHHHc
Confidence 89999999999999876 67899999999999863 344566666666655433
No 26
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.75 E-value=3.5e-17 Score=161.21 Aligned_cols=263 Identities=13% Similarity=0.050 Sum_probs=146.2
Q ss_pred CeehHHHHHHHHHhCCCHHHHHHHHhhCCc---CCHhHHHHHHHHHHHcCChHHHHHHHhhCC---CCCcccHHHHHHHh
Q 009066 69 DTASWNTMISGFVQKKNMAKARDLFLAMPE---KNSVSWSAMISGYIECGQLDKAVELFKVAP---VKSVVAWTAMISGY 142 (545)
Q Consensus 69 d~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~ 142 (545)
+...|..+...+.+.|++++|...|+++.. .+..++..+...|.+.|++++|.+.|++.. ..+..+|..+...|
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSY 143 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 455677788888888888888888887762 356677777777777777777777777654 23456677777777
Q ss_pred cchhhhccCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcC
Q 009066 143 MKFGYVENSWAEDGLKLLRMMIGLGIRPNAS-SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCG 221 (545)
Q Consensus 143 ~~~g~~~~g~~~~A~~~~~~m~~~~~~pd~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g 221 (545)
...|++++|++.|+++.+.. |+.. .+..+ .....++..+...|.+.|
T Consensus 144 -----~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~-------------------------~~~~~~~~~l~~~~~~~g 191 (365)
T 4eqf_A 144 -----TNTSHQQDACEALKNWIKQN--PKYKYLVKNK-------------------------KGSPGLTRRMSKSPVDSS 191 (365)
T ss_dssp -----HHTTCHHHHHHHHHHHHHHC--HHHHCC--------------------------------------------CCH
T ss_pred -----HccccHHHHHHHHHHHHHhC--ccchHHHhhh-------------------------ccchHHHHHHHHHHhhhh
Confidence 77777777777777776532 2211 11100 001112223344444555
Q ss_pred CHHHHHHHHHhccC--C---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHH
Q 009066 222 DLEDACKLFLEIQR--K---DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYF 296 (545)
Q Consensus 222 ~~~~A~~~f~~~~~--~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 296 (545)
++++|...|+++.+ | +..+|..+...|...|++++|+..|+++.+.. +.+..++..+..++...|++++|...|
T Consensus 192 ~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~ 270 (365)
T 4eqf_A 192 VLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAY 270 (365)
T ss_dssp HHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 55555555554432 1 34455555555555555555555555555432 223445555555555555666666555
Q ss_pred HHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhC-CCCC-------------CHhHHHHHHHHHHhcCCHHHHHH
Q 009066 297 DSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKP-------------QPAIFGTLLSACRVHKRLDLAEF 362 (545)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-------------~~~~~~~li~~~~~~g~~~~A~~ 362 (545)
+++.+. .+.+...+..+..+|.+.|++++|...|+++ ...| +..+|..+..++...|+.+.+..
T Consensus 271 ~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 348 (365)
T 4eqf_A 271 TRALEI--QPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQA 348 (365)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhc--CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHH
Confidence 555542 1233555555666666666666666655554 0001 24566777777777777776666
Q ss_pred HHHH
Q 009066 363 AAMN 366 (545)
Q Consensus 363 ~~~~ 366 (545)
+.++
T Consensus 349 ~~~~ 352 (365)
T 4eqf_A 349 ANLG 352 (365)
T ss_dssp HHTT
T ss_pred HHHh
Confidence 5544
No 27
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.74 E-value=8.1e-17 Score=155.54 Aligned_cols=259 Identities=10% Similarity=-0.030 Sum_probs=191.8
Q ss_pred ccHHHHHHHhcchhhhccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhCCCCCCcccHHH
Q 009066 133 VAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTP 212 (545)
Q Consensus 133 ~~~~~li~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 212 (545)
..|..+...+ ...|++++|+.+|+++.+.. +.+..++..+..++...|++++|...++.+.+.. +.+..++..
T Consensus 22 ~~~~~~a~~~-----~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~ 94 (327)
T 3cv0_A 22 ENPMEEGLSM-----LKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAA 94 (327)
T ss_dssp SCHHHHHHHH-----HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHHHHHHH-----HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHH
Confidence 4455555666 66666777777776666543 2355566666666666777777777777666653 334556666
Q ss_pred HHHHHHhcCCHHHHHHHHHhccCC---ChhhHHHH--------------HH-HHHHcCChHHHHHHHHHHHHcCCCCCHH
Q 009066 213 LISMYCKCGDLEDACKLFLEIQRK---DVVTWNAM--------------IS-GYAQHGKGEKALRLFDKMKDEGMKPDSI 274 (545)
Q Consensus 213 li~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 274 (545)
+...|...|++++|.+.|+++.+. +...+..+ .. .+...|++++|+..++++.+.. +.+..
T Consensus 95 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 173 (327)
T 3cv0_A 95 LAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQ 173 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHH
Confidence 677777777777777777666531 22223222 22 3667788999999999998764 33677
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHH
Q 009066 275 TFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKP-QPAIFGTLLSACR 352 (545)
Q Consensus 275 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~ 352 (545)
.+..+...+...|++++|...++.+.+. .+.+...+..+...|.+.|++++|...++++ ...| +...|..+...+.
T Consensus 174 ~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~ 251 (327)
T 3cv0_A 174 LHASLGVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYS 251 (327)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 8888888999999999999999998864 3456788999999999999999999999887 2234 5788999999999
Q ss_pred hcCCHHHHHHHHHHHhcCCCC------------CCchhHHHHHHHHHHcCCchHHHHHHHHh
Q 009066 353 VHKRLDLAEFAAMNLFNLNPA------------NAAGCYVQLANIYAAMKKWDDVARIRLSM 402 (545)
Q Consensus 353 ~~g~~~~A~~~~~~~~~~~p~------------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 402 (545)
..|++++|...++++++..|+ ... ++..++.+|...|++++|..++++.
T Consensus 252 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 252 NMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRS-MWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHH-HHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HhccHHHHHHHHHHHHHhCCccccccccchhhcCHH-HHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 999999999999999999888 555 8999999999999999999988654
No 28
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.73 E-value=4.8e-16 Score=158.67 Aligned_cols=359 Identities=12% Similarity=0.054 Sum_probs=238.9
Q ss_pred hhhHHHHHHHHHcCCCCHHHHHHHHhcCC------------CCCeehHHHHHHHHHhCCCHHHHHHHHhhCCc-------
Q 009066 38 VVSYNIMLSCILLNSDDVVAAFDFFQRLP------------IKDTASWNTMISGFVQKKNMAKARDLFLAMPE------- 98 (545)
Q Consensus 38 ~~~~~~li~~~~~~~g~~~~A~~~~~~m~------------~~d~~~~~~li~~~~~~g~~~~a~~~~~~~~~------- 98 (545)
...||.+-..+... |+.++|++.|++.. +....+|+.+...|...|++++|...+++...
T Consensus 51 a~~yn~Lg~~~~~~-G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 51 ATMCNLLAYLKHLK-GQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 44678777778888 99999999987653 22346899999999999999999998887651
Q ss_pred ----CCHhHHHHHHHHHHHcC--ChHHHHHHHhhCC--CC-CcccHHHHHHHhcchhhhccCChHHHHHHHHHHHhCCCC
Q 009066 99 ----KNSVSWSAMISGYIECG--QLDKAVELFKVAP--VK-SVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIR 169 (545)
Q Consensus 99 ----~~~~~~~~li~~~~~~g--~~~~A~~~f~~~~--~~-~~~~~~~li~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~ 169 (545)
....++..+..++.+.| ++++|.+.|++.. .| +...+..+...+.+. ...++.++|++.|++..+.. +
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l--~~~~~~~~al~~~~~al~l~-p 206 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRL--DNWPPSQNAIDPLRQAIRLN-P 206 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH--HHSCCCCCTHHHHHHHHHHC-S
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh--cCchHHHHHHHHHHHHhhcC-C
Confidence 13456666666666654 6899999998764 23 445555555443211 34577788999999888753 3
Q ss_pred CCHHHHHHHHHHHh----ccCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHH
Q 009066 170 PNASSLSSVLLGCS----HLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR---KDVVTWN 242 (545)
Q Consensus 170 pd~~t~~~ll~~~~----~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~ 242 (545)
.+..++..+...+. ..++.++|.+.++...+.. +.+..++..+...|.+.|++++|...|++..+ .+..+|.
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 285 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHC 285 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHH
Confidence 35556655554444 3467889999999988765 45677888899999999999999999998764 3556677
Q ss_pred HHHHHHHHc-------------------CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHhHHhc
Q 009066 243 AMISGYAQH-------------------GKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDY 303 (545)
Q Consensus 243 ~li~~~~~~-------------------g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 303 (545)
.+...|... +..++|+..|++..... +.+..++..+...+...|++++|...|++..+.
T Consensus 286 ~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~- 363 (472)
T 4g1t_A 286 QIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSK- 363 (472)
T ss_dssp HHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc-
Confidence 776665432 23567888888877653 223456777888899999999999999988764
Q ss_pred CCCCCHH----HHHHHHHH-HhHcCCHHHHHHHHHhC-CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCch
Q 009066 304 GIAAKPD----HYTCMVDL-LGRAGKLVEAVDLIKKM-PFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAG 377 (545)
Q Consensus 304 ~~~~~~~----~~~~li~~-~~~~g~~~~A~~~~~~m-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 377 (545)
.|+.. .+..+... +...|+.++|+..|++. .+.|+...+... .+.+..++++.++.+|+++.
T Consensus 364 --~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~---------~~~l~~~~~~~l~~~p~~~~- 431 (472)
T 4g1t_A 364 --ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKM---------KDKLQKIAKMRLSKNGADSE- 431 (472)
T ss_dssp --CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHH---------HHHHHHHHHHHHHHCC-CTT-
T ss_pred --CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHH---------HHHHHHHHHHHHHhCCCCHH-
Confidence 33322 23333332 34678999999999876 555665443332 34556778888889999988
Q ss_pred hHHHHHHHHHHcCCchHHHHHHHHhhhCCCccCCceeE
Q 009066 378 CYVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSW 415 (545)
Q Consensus 378 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~ 415 (545)
+|..|+.+|...|++++|.+.|++..+.+-..+...+|
T Consensus 432 ~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 432 ALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp HHHHHHHHHHHHHHCC----------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 99999999999999999999999998866443334444
No 29
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.71 E-value=3.6e-15 Score=154.66 Aligned_cols=367 Identities=10% Similarity=0.062 Sum_probs=265.1
Q ss_pred CCCCccHHHHHHHHHHhCCCChHHHHHHHccCC--CCChhhHHHHHHHHHcCCCCHHHHHH----HHhcCC------CCC
Q 009066 2 NVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIP--QPDVVSYNIMLSCILLNSDDVVAAFD----FFQRLP------IKD 69 (545)
Q Consensus 2 ~~~~~~~~~~li~~~~~~g~~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~~g~~~~A~~----~~~~m~------~~d 69 (545)
.|.+...|..++..+.+.|+ +++|+.+|++.. .|++..|...+.......|+.+.|++ +|++.. +++
T Consensus 42 ~P~~~~~w~~~~~~~~~~~~-~~~a~~~~~ral~~~p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~ 120 (530)
T 2ooe_A 42 FPSSGRFWKLYIEAEIKAKN-YDKVEKLFQRCLMKVLHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMS 120 (530)
T ss_dssp CTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTC
T ss_pred CCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCccc
Confidence 35677789999999999999 999999999987 47877888877643322266666554 676542 235
Q ss_pred eehHHHHHHHHHh---------CCCHHHHHHHHhhCCc-CC---HhHHHHHHHHH-------------HHcCChHHHHHH
Q 009066 70 TASWNTMISGFVQ---------KKNMAKARDLFLAMPE-KN---SVSWSAMISGY-------------IECGQLDKAVEL 123 (545)
Q Consensus 70 ~~~~~~li~~~~~---------~g~~~~a~~~~~~~~~-~~---~~~~~~li~~~-------------~~~g~~~~A~~~ 123 (545)
...|...+....+ .|++++|..+|++.+. |+ ...|....... .+.++++.|..+
T Consensus 121 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~ 200 (530)
T 2ooe_A 121 YQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRV 200 (530)
T ss_dssp HHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHH
Confidence 5678887776654 6899999999999874 22 12333322211 124567777766
Q ss_pred Hhh-------CC------CCC--------cccHHHHHHHhcchhhhccCCh----HHHHHHHHHHHhCCCCCCHHHHHHH
Q 009066 124 FKV-------AP------VKS--------VVAWTAMISGYMKFGYVENSWA----EDGLKLLRMMIGLGIRPNASSLSSV 178 (545)
Q Consensus 124 f~~-------~~------~~~--------~~~~~~li~~~~~~g~~~~g~~----~~A~~~~~~m~~~~~~pd~~t~~~l 178 (545)
+.. +. .|+ ...|...+......+ ...++. .+|+.+|++.+... +-+...|...
T Consensus 201 ~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~-~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~ 278 (530)
T 2ooe_A 201 AKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNP-LRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEA 278 (530)
T ss_dssp HHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCS-SCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHH
T ss_pred HHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCC-ccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 654 11 111 235555553330000 011232 47888999988752 3467778777
Q ss_pred HHHHhc-------cCcHH-------HHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhccC--C-Ch-hh
Q 009066 179 LLGCSH-------LSSLQ-------LGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR--K-DV-VT 240 (545)
Q Consensus 179 l~~~~~-------~~~~~-------~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~-~~-~~ 240 (545)
...+.+ .|+++ +|..+++..++.-.+.+..++..++..+.+.|++++|..+|+++.+ | +. ..
T Consensus 279 ~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 358 (530)
T 2ooe_A 279 AQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLV 358 (530)
T ss_dssp HHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHH
T ss_pred HHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHH
Confidence 777764 68877 8999999999743355688999999999999999999999998864 3 33 58
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH-HHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHH
Q 009066 241 WNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLL-ACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLL 319 (545)
Q Consensus 241 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~-a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 319 (545)
|...+..+.+.|+.++|..+|++..+... .+...+..... .+...|+.++|..+|+...+.. +.++..|..+++.+
T Consensus 359 ~~~~~~~~~~~~~~~~A~~~~~~Al~~~~-~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~--p~~~~~~~~~~~~~ 435 (530)
T 2ooe_A 359 YIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYL 435 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCTT-CCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhccC-CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC--CCCHHHHHHHHHHH
Confidence 99999999999999999999999987532 22233332222 2336899999999999988753 45688999999999
Q ss_pred hHcCCHHHHHHHHHhC----CCCCC--HhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC
Q 009066 320 GRAGKLVEAVDLIKKM----PFKPQ--PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPAN 374 (545)
Q Consensus 320 ~~~g~~~~A~~~~~~m----~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~ 374 (545)
.+.|+.++|..+|++. +..|+ ...|...+.....+|+.+.+..++.++.+..|++
T Consensus 436 ~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~~ 496 (530)
T 2ooe_A 436 SHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE 496 (530)
T ss_dssp TTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHHH
T ss_pred HhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCchh
Confidence 9999999999999987 22332 3489999999999999999999999999888853
No 30
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.71 E-value=1.2e-15 Score=144.85 Aligned_cols=242 Identities=10% Similarity=0.036 Sum_probs=199.0
Q ss_pred hccCChHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHhccCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHH
Q 009066 148 VENSWAEDGLKLLRMMIGLGIRPNA--SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLED 225 (545)
Q Consensus 148 ~~~g~~~~A~~~~~~m~~~~~~pd~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~ 225 (545)
...|++..|+..+++... ..|+. .....+..++...|+++.|...++. .-+|+...+..+...|...|+.++
T Consensus 10 ~~~g~y~~ai~~~~~~~~--~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 10 FYIGSYQQCINEAQRVKP--SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp HHTTCHHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHHHHHhccc--CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHH
Confidence 568999999998887654 34543 3556678899999999999876543 235677788889999999999999
Q ss_pred HHHHHHhccC----C-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHhH
Q 009066 226 ACKLFLEIQR----K-DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMV 300 (545)
Q Consensus 226 A~~~f~~~~~----~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 300 (545)
|.+.|+++.. | +...+..+...|.+.|++++|+..+++ +.+...+..+...+.+.|++++|.+.++.+.
T Consensus 84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 157 (291)
T 3mkr_A 84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQ 157 (291)
T ss_dssp HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999998742 3 566788888999999999999999987 4577788889999999999999999999998
Q ss_pred HhcCCCCCHHH---HHHHHHHHhHcCCHHHHHHHHHhC--CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC
Q 009066 301 NDYGIAAKPDH---YTCMVDLLGRAGKLVEAVDLIKKM--PFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANA 375 (545)
Q Consensus 301 ~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~ 375 (545)
+. .|+... ..+++..+...|++++|..+|+++ ....+...|+.+..++...|++++|+..++++++.+|+++
T Consensus 158 ~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~ 234 (291)
T 3mkr_A 158 DQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHP 234 (291)
T ss_dssp HH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred hh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 75 354321 223445555669999999999998 2235778999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHcCCchH-HHHHHHHhhhC
Q 009066 376 AGCYVQLANIYAAMKKWDD-VARIRLSMKEN 405 (545)
Q Consensus 376 ~~~~~~l~~~~~~~g~~~~-a~~~~~~m~~~ 405 (545)
. ++..++.++...|+.++ +.++++++.+.
T Consensus 235 ~-~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 235 E-TLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp H-HHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 8 99999999999999986 56888887763
No 31
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.70 E-value=8.5e-14 Score=150.70 Aligned_cols=344 Identities=13% Similarity=0.119 Sum_probs=254.3
Q ss_pred HHHHHHHHhCCCChHHHHHHHccCC-CCC-----hhhHHHHHHHHHcCCCCHHHHHHHHhcCCCCCeehHHHHHHHHHhC
Q 009066 10 NSVLAGFAKQRGKLKDAQELFDKIP-QPD-----VVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQK 83 (545)
Q Consensus 10 ~~li~~~~~~g~~~~~A~~~f~~~~-~~~-----~~~~~~li~~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~ 83 (545)
...+..|+..|. +.+|.++++++. +|+ ...-|.++....+. +..+..+..++... ....-+...+...
T Consensus 989 s~~vKaf~~agl-p~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka--D~~Rv~eyI~kLd~---~d~~eIA~Iai~l 1062 (1630)
T 1xi4_A 989 SVTVKAFMTADL-PNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA--DRTRVMEYINRLDN---YDAPDIANIAISN 1062 (1630)
T ss_pred HHHHHHHHhCCC-HHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh--ChhhHHHHHHHhhh---ccHHHHHHHHHhC
Confidence 456677777887 888888888776 333 23344455544444 34444444444431 2244567788889
Q ss_pred CCHHHHHHHHhhCCcCCHhHHHHHHHHHHHcCChHHHHHHHhhCCCCCcccHHHHHHHhcchhhhccCChHHHHHHHHHH
Q 009066 84 KNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMM 163 (545)
Q Consensus 84 g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~g~~~~A~~~~~~m 163 (545)
|.+++|..+|++.. ......+.++ -..+++++|.++.++.. +..+|..+..++ ...|++++|++.|.+.
T Consensus 1063 glyEEAf~IYkKa~-~~~~A~~VLi---e~i~nldrAiE~Aervn--~p~vWsqLAKAq-----l~~G~~kEAIdsYiKA 1131 (1630)
T 1xi4_A 1063 ELFEEAFAIFRKFD-VNTSAVQVLI---EHIGNLDRAYEFAERCN--EPAVWSQLAKAQ-----LQKGMVKEAIDSYIKA 1131 (1630)
T ss_pred CCHHHHHHHHHHcC-CHHHHHHHHH---HHHhhHHHHHHHHHhcC--CHHHHHHHHHHH-----HhCCCHHHHHHHHHhc
Confidence 99999999999874 2222223333 27788999999988763 466788999999 8999999999998653
Q ss_pred HhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhccCCChhhHHH
Q 009066 164 IGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNA 243 (545)
Q Consensus 164 ~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~ 243 (545)
-|...|..++.+|.+.|+++++.+++....+.. ++..+.+.++.+|++.+++++...+. ..++...|..
T Consensus 1132 ------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~~~ 1200 (1630)
T 1xi4_A 1132 ------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQ 1200 (1630)
T ss_pred ------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHHHH
Confidence 467788889999999999999999999888765 44444556899999999988644443 3556677888
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcC
Q 009066 244 MISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAG 323 (545)
Q Consensus 244 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 323 (545)
+...|...|++++|..+|... ..|..+...+.+.|++++|.+.+++. .+..+|..+..++...|
T Consensus 1201 iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA-------~n~~aWkev~~acve~~ 1264 (1630)
T 1xi4_A 1201 VGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACVDGK 1264 (1630)
T ss_pred HHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh-------CCHHHHHHHHHHHhhhh
Confidence 888899999999999999884 37888889999999999999888655 34688888888888899
Q ss_pred CHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHc--CCchHHHHHHH
Q 009066 324 KLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAM--KKWDDVARIRL 400 (545)
Q Consensus 324 ~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~--g~~~~a~~~~~ 400 (545)
++..|......+ ..++..+..++..|...|.+++|+.++++.++++|.+.. .|..|+.+|++. ++..++.+.|.
T Consensus 1265 Ef~LA~~cgl~I--iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~g-mftELaiLyaKy~peklmEhlk~f~ 1340 (1630)
T 1xi4_A 1265 EFRLAQMCGLHI--VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMG-MFTELAILYSKFKPQKMREHLELFW 1340 (1630)
T ss_pred HHHHHHHHHHhh--hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhH-HHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 999998877654 345556678888999999999999999999999988877 887777777765 33444444443
No 32
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.70 E-value=4.7e-16 Score=150.14 Aligned_cols=267 Identities=12% Similarity=0.051 Sum_probs=146.3
Q ss_pred ehHHHHHHHHHhCCCHHHHHHHHhhCCc---CCHhHHHHHHHHHHHcCChHHHHHHHhhCC---CCCcccHHHHHHHhcc
Q 009066 71 ASWNTMISGFVQKKNMAKARDLFLAMPE---KNSVSWSAMISGYIECGQLDKAVELFKVAP---VKSVVAWTAMISGYMK 144 (545)
Q Consensus 71 ~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~ 144 (545)
..|..+...+...|++++|..+|+++.. .+..++..+...|...|++++|.+.|+++. ..+..+|..+...+
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~-- 99 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH-- 99 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHH--
Confidence 3455555556666666666666655542 234445555555555555555555554432 12334444444555
Q ss_pred hhhhccCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHHHhCCCCCCcccHHHH-HH-HHHhcC
Q 009066 145 FGYVENSWAEDGLKLLRMMIGLGIRPNA-SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPL-IS-MYCKCG 221 (545)
Q Consensus 145 ~g~~~~g~~~~A~~~~~~m~~~~~~pd~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l-i~-~y~~~g 221 (545)
...|++++|++.|+++.+.. |+. ..+..+...+ ++......+ .. .+...|
T Consensus 100 ---~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~ 152 (327)
T 3cv0_A 100 ---TNEHNANAALASLRAWLLSQ--PQYEQLGSVNLQAD----------------------VDIDDLNVQSEDFFFAAPN 152 (327)
T ss_dssp ---HHTTCHHHHHHHHHHHHHTS--TTTTTC------------------------------------------CCTTSHH
T ss_pred ---HHcCCHHHHHHHHHHHHHhC--CccHHHHHHHhHHH----------------------HHHHHHHHHHHhHHHHHcc
Confidence 55555555555555554432 211 1111110000 000000001 22 255566
Q ss_pred CHHHHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHH
Q 009066 222 DLEDACKLFLEIQR---KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDS 298 (545)
Q Consensus 222 ~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 298 (545)
++++|...|+++.+ .+...|..+...|...|++++|+..++++.+.. +.+..++..+...+...|++++|...+++
T Consensus 153 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 231 (327)
T 3cv0_A 153 EYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNR 231 (327)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 66667666666542 345666677777777777777777777766642 22455666666777777777777777777
Q ss_pred hHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhC-CCCC-------------CHhHHHHHHHHHHhcCCHHHHHHHH
Q 009066 299 MVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKP-------------QPAIFGTLLSACRVHKRLDLAEFAA 364 (545)
Q Consensus 299 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-------------~~~~~~~li~~~~~~g~~~~A~~~~ 364 (545)
+.+. .+.+...+..+...|.+.|++++|.+.+++. ...| +...|..+..++...|++++|...+
T Consensus 232 a~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 309 (327)
T 3cv0_A 232 ALDI--NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTY 309 (327)
T ss_dssp HHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHT
T ss_pred HHHc--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 6653 2344666777777777777777777777665 1122 2566777777777777777777777
Q ss_pred HHHhc
Q 009066 365 MNLFN 369 (545)
Q Consensus 365 ~~~~~ 369 (545)
++.++
T Consensus 310 ~~~l~ 314 (327)
T 3cv0_A 310 AQNVE 314 (327)
T ss_dssp TCCSH
T ss_pred HHHHH
Confidence 65544
No 33
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.70 E-value=1.8e-17 Score=173.67 Aligned_cols=150 Identities=15% Similarity=0.190 Sum_probs=123.0
Q ss_pred CCcccHHHHHHHHHhcCCHHHHHHHHHhcc-------CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 009066 205 KDTTALTPLISMYCKCGDLEDACKLFLEIQ-------RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFV 277 (545)
Q Consensus 205 ~~~~~~~~li~~y~~~g~~~~A~~~f~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 277 (545)
.-..+||+||++|+++|++++|.++|++|. .||+++||+||.+|++.|+.++|.++|++|.+.|+.||.+||+
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 345689999999999999999999998764 4799999999999999999999999999999999999999999
Q ss_pred HHHHHHHccCc-HHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhCCCC----CCHhHHHHHHHHHH
Q 009066 278 ALLLACNHAGL-VDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK----PQPAIFGTLLSACR 352 (545)
Q Consensus 278 ~ll~a~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----p~~~~~~~li~~~~ 352 (545)
++|.++++.|+ .++|.++|++|.++ |+.||..+|++++....+.+-++...++..++... |.+.+..-|...|.
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s 283 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYA 283 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHC
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHc
Confidence 99999999997 57899999999887 99999999999998888776666555554444111 11334444555565
Q ss_pred hcC
Q 009066 353 VHK 355 (545)
Q Consensus 353 ~~g 355 (545)
+.+
T Consensus 284 ~d~ 286 (1134)
T 3spa_A 284 KDG 286 (1134)
T ss_dssp CCS
T ss_pred cCC
Confidence 544
No 34
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.69 E-value=1.2e-13 Score=149.43 Aligned_cols=347 Identities=12% Similarity=0.157 Sum_probs=273.2
Q ss_pred CccHHHHHHHHHHhCCCChHHHHHHHccCCCCChhhHHHHHHHHHcCCCCHHHHHHHHhcCCCCCeehHHHHHHHHHhCC
Q 009066 5 TTVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKK 84 (545)
Q Consensus 5 ~~~~~~~li~~~~~~g~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g 84 (545)
+....|.|+.+..+. + ..+.....+....-+ ...+-..+... |.+++|..+|++.. ......+.++ -..+
T Consensus 1021 n~~LqnlLi~tAIka-D-~~Rv~eyI~kLd~~d---~~eIA~Iai~l-glyEEAf~IYkKa~-~~~~A~~VLi---e~i~ 1090 (1630)
T 1xi4_A 1021 HRNLQNLLILTAIKA-D-RTRVMEYINRLDNYD---APDIANIAISN-ELFEEAFAIFRKFD-VNTSAVQVLI---EHIG 1090 (1630)
T ss_pred cHHHHHHHHHHHHHh-C-hhhHHHHHHHhhhcc---HHHHHHHHHhC-CCHHHHHHHHHHcC-CHHHHHHHHH---HHHh
Confidence 456778888777777 3 566666666555333 33344556667 99999999999974 2222223333 2788
Q ss_pred CHHHHHHHHhhCCcCCHhHHHHHHHHHHHcCChHHHHHHHhhCCCCCcccHHHHHHHhcchhhhccCChHHHHHHHHHHH
Q 009066 85 NMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMI 164 (545)
Q Consensus 85 ~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~g~~~~A~~~~~~m~ 164 (545)
++++|.++.++. .++.+|..+..++.+.|++++|.+.|.+. .|...|..++..+ .+.|++++|++.|...+
T Consensus 1091 nldrAiE~Aerv--n~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD~say~eVa~~~-----~~lGkyEEAIeyL~mAr 1161 (1630)
T 1xi4_A 1091 NLDRAYEFAERC--NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAA-----NTSGNWEELVKYLQMAR 1161 (1630)
T ss_pred hHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCHHHHHHHHHhc--CChHHHHHHHHHH-----HHcCCHHHHHHHHHHHH
Confidence 999999999987 45788999999999999999999999774 6778889999999 99999999999999877
Q ss_pred hCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhccCCChhhHHHH
Q 009066 165 GLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAM 244 (545)
Q Consensus 165 ~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~l 244 (545)
+.. +++...+.++.+|++.++++....+. + .++...+..+.+.|...|++++|..+|... ..|..+
T Consensus 1162 k~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rL 1227 (1630)
T 1xi4_A 1162 KKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRL 1227 (1630)
T ss_pred hhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHH
Confidence 654 33333345888999999988655443 2 345566777999999999999999999986 489999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCC
Q 009066 245 ISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGK 324 (545)
Q Consensus 245 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 324 (545)
...|.+.|++++|++.+++. .+..+|..+..+|...|++..|...... +..++..+..++..|.+.|.
T Consensus 1228 A~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~------Iiv~~deLeeli~yYe~~G~ 1295 (1630)
T 1xi4_A 1228 ASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH------IVVHADELEELINYYQDRGY 1295 (1630)
T ss_pred HHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh------hhcCHHHHHHHHHHHHHcCC
Confidence 99999999999999999987 3668999999999999999999887643 34567788899999999999
Q ss_pred HHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhc--CCHHHHHHHHHHHhcCCC-----CCCchhHHHHHHHHHHcCCchHH
Q 009066 325 LVEAVDLIKKM-PFKP-QPAIFGTLLSACRVH--KRLDLAEFAAMNLFNLNP-----ANAAGCYVQLANIYAAMKKWDDV 395 (545)
Q Consensus 325 ~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~--g~~~~A~~~~~~~~~~~p-----~~~~~~~~~l~~~~~~~g~~~~a 395 (545)
+++|+.+++.. +..| ....|+-|..++++. ++..++.++|..-..+.| .... .|..+...|.+.|+|+.|
T Consensus 1296 feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~-lW~elv~LY~~~~e~dnA 1374 (1630)
T 1xi4_A 1296 FEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAH-LWAELVFLYDKYEEYDNA 1374 (1630)
T ss_pred HHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHH-HHHHHHHHHHhcccHHHH
Confidence 99999999876 5544 345777777777765 466678888887777665 4444 789999999999999998
Q ss_pred HH
Q 009066 396 AR 397 (545)
Q Consensus 396 ~~ 397 (545)
..
T Consensus 1375 ~~ 1376 (1630)
T 1xi4_A 1375 II 1376 (1630)
T ss_pred HH
Confidence 84
No 35
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.68 E-value=6e-15 Score=150.51 Aligned_cols=359 Identities=11% Similarity=-0.036 Sum_probs=233.9
Q ss_pred ccHHHHHHHHHHhCCCChHHHHHHHccCC-----------CC-ChhhHHHHHHHHHcCCCCHHHHHHHHhcCC-------
Q 009066 6 TVNWNSVLAGFAKQRGKLKDAQELFDKIP-----------QP-DVVSYNIMLSCILLNSDDVVAAFDFFQRLP------- 66 (545)
Q Consensus 6 ~~~~~~li~~~~~~g~~~~~A~~~f~~~~-----------~~-~~~~~~~li~~~~~~~g~~~~A~~~~~~m~------- 66 (545)
..+||.|...|...|+ .++|.+.|++.. .| ..++|+.+-..|... |++++|...|++..
T Consensus 51 a~~yn~Lg~~~~~~G~-~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~-g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQ-NEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHM-GRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp CHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHc-CChHHHHHHHHHHHHHhHhcc
Confidence 5578999999999999 999999987642 23 346788888899999 99999999888664
Q ss_pred C---C-CeehHHHHHHHHHh--CCCHHHHHHHHhhCCc---CCHhHHHHHHHHH---HHcCChHHHHHHHhhCC---CCC
Q 009066 67 I---K-DTASWNTMISGFVQ--KKNMAKARDLFLAMPE---KNSVSWSAMISGY---IECGQLDKAVELFKVAP---VKS 131 (545)
Q Consensus 67 ~---~-d~~~~~~li~~~~~--~g~~~~a~~~~~~~~~---~~~~~~~~li~~~---~~~g~~~~A~~~f~~~~---~~~ 131 (545)
. + ...++..+..++.. .+++++|+..|++..+ .++..+..+...+ ...++.++|.+.|++.. ..+
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~ 208 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDN 208 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSC
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcc
Confidence 1 1 23456655555554 4579999999998873 3556666666554 45677788888887643 334
Q ss_pred cccHHHHHHHhcchhhhccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhCCCCCCcccHH
Q 009066 132 VVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALT 211 (545)
Q Consensus 132 ~~~~~~li~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 211 (545)
...+..+...+...+ ...++.++|.+.+++..... +.+...+..+...+...|++++|...+..+.+.. +.+..++.
T Consensus 209 ~~~~~~l~~~~~~~~-~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~ 285 (472)
T 4g1t_A 209 QYLKVLLALKLHKMR-EEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHC 285 (472)
T ss_dssp HHHHHHHHHHHHHCC-------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHH
T ss_pred hHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHH
Confidence 555655554442211 45678899999999988754 4567788889999999999999999999998875 44566677
Q ss_pred HHHHHHHhc-------------------CCHHHHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCC
Q 009066 212 PLISMYCKC-------------------GDLEDACKLFLEIQR---KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGM 269 (545)
Q Consensus 212 ~li~~y~~~-------------------g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 269 (545)
.+...|... +..+.|...|++..+ .+..+|..+...|...|++++|+..|++.+....
T Consensus 286 ~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~ 365 (472)
T 4g1t_A 286 QIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKEL 365 (472)
T ss_dssp HHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCC
Confidence 777666432 235667777776653 4667899999999999999999999999988654
Q ss_pred CCCHH--HHHHHHH-HHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhC-CCC-CCHhHH
Q 009066 270 KPDSI--TFVALLL-ACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFK-PQPAIF 344 (545)
Q Consensus 270 ~p~~~--t~~~ll~-a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~ 344 (545)
.|... .+..+.. ...+.|+.++|+..|.+..+ +.|+....... .+.+.+++++. ... .+..+|
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~~~~~~---------~~~l~~~~~~~l~~~p~~~~~~ 433 (472)
T 4g1t_A 366 TPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSREKEKM---------KDKLQKIAKMRLSKNGADSEAL 433 (472)
T ss_dssp CHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCHHHHHH---------HHHHHHHHHHHHHHCC-CTTHH
T ss_pred CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHHHHH---------HHHHHHHHHHHHHhCCCCHHHH
Confidence 43322 1222222 34578999999999998875 35554332222 22333344333 222 467899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHH
Q 009066 345 GTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQL 382 (545)
Q Consensus 345 ~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l 382 (545)
..|...|...|++++|+..|+++++++|.++. +...+
T Consensus 434 ~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~-a~~~~ 470 (472)
T 4g1t_A 434 HVLAFLQELNEKMQQADEDSERGLESGSLIPS-ASSWN 470 (472)
T ss_dssp HHHHHHHHHHHHCC------------------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc-HhhcC
Confidence 99999999999999999999999999988775 54443
No 36
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.66 E-value=3.5e-17 Score=171.62 Aligned_cols=146 Identities=12% Similarity=0.220 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHh---CCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhcc----CCChhhHHHH
Q 009066 172 ASSLSSVLLGCSHLSSLQLGKQVHQLVFK---SPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQ----RKDVVTWNAM 244 (545)
Q Consensus 172 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~---~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~----~~~~~~~~~l 244 (545)
..||+++|.+|++.|++++|.++|..|.+ .|+.||+.+||+||++|++.|++++|.++|++|. .||++|||++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 45777777777777777777777766543 4677777777777888888888888888887775 4788889999
Q ss_pred HHHHHHcCCh-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCC------HHHHHHHHH
Q 009066 245 ISGYAQHGKG-EKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK------PDHYTCMVD 317 (545)
Q Consensus 245 i~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~~li~ 317 (545)
|.++++.|+. ++|.++|++|.+.|+.||.+||+.++.++.+.+-+ +..+++.. ++.|+ +.+...|.+
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL----~~Vrkv~P--~f~p~~~~~~~~~t~~LL~d 280 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVL----KAVHKVKP--TFSLPPQLPPPVNTSKLLRD 280 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHH----HHHGGGCC--CCCCCCCCCCCCCCCTTTHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHH----HHHHHhCc--ccCCCCCCcccccchHHHHH
Confidence 9999999875 78899999999999999999999998777664433 33334433 33333 445556778
Q ss_pred HHhHcC
Q 009066 318 LLGRAG 323 (545)
Q Consensus 318 ~~~~~g 323 (545)
.|.+.+
T Consensus 281 l~s~d~ 286 (1134)
T 3spa_A 281 VYAKDG 286 (1134)
T ss_dssp HHCCCS
T ss_pred HHccCC
Confidence 888766
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.64 E-value=2.1e-14 Score=133.29 Aligned_cols=219 Identities=11% Similarity=0.030 Sum_probs=172.4
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhccC--C-C-------hhhHH
Q 009066 173 SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR--K-D-------VVTWN 242 (545)
Q Consensus 173 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~-~-------~~~~~ 242 (545)
..+..+...+...|++++|...+..+++.. .+..++..+...|...|++++|...|++..+ | + ..+|.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 345555666666677777777777766665 5566677777777777777777777776653 1 1 56788
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHc
Q 009066 243 AMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRA 322 (545)
Q Consensus 243 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 322 (545)
.+...|...|++++|+..|++.... .|+. ..+...|++++|...++.+.+ ..+.+...+..+...|...
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAY--VNPEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHH--cCcchHHHHHHHHHHHHHh
Confidence 8888899999999999999998874 3443 345566888999999988876 3344567888899999999
Q ss_pred CCHHHHHHHHHhC-CCC-CCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchHHHHHHH
Q 009066 323 GKLVEAVDLIKKM-PFK-PQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRL 400 (545)
Q Consensus 323 g~~~~A~~~~~~m-~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 400 (545)
|++++|...+++. ... .+...|..+...+...|++++|...++++++..|++.. ++..++.+|...|++++|...++
T Consensus 153 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~ 231 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVR-AYIRKATAQIAVKEYASALETLD 231 (258)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHH-HHHHHHHHHHHHhhHHHHHHHHH
Confidence 9999999999887 222 35788999999999999999999999999999999887 89999999999999999999999
Q ss_pred HhhhC
Q 009066 401 SMKEN 405 (545)
Q Consensus 401 ~m~~~ 405 (545)
+..+.
T Consensus 232 ~a~~~ 236 (258)
T 3uq3_A 232 AARTK 236 (258)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 88653
No 38
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.63 E-value=1.8e-14 Score=130.54 Aligned_cols=195 Identities=14% Similarity=0.027 Sum_probs=150.3
Q ss_pred CCCcccHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 009066 204 CKDTTALTPLISMYCKCGDLEDACKLFLEIQR---KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALL 280 (545)
Q Consensus 204 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 280 (545)
+++...+..+...+.+.|++++|...|++..+ .+...|..+...+.+.|++++|+..|++..+.. +.+...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 45666777788888888888888888887764 356778888888888888888888888888753 22456777777
Q ss_pred HHHHcc-----------CcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhC-CCCCCHhHHHHHH
Q 009066 281 LACNHA-----------GLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKPQPAIFGTLL 348 (545)
Q Consensus 281 ~a~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~li 348 (545)
.++... |++++|...+++..+. .+.+...+..+..+|...|++++|+..|++. ....+...|..+.
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la 158 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALA 158 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHH
Confidence 788888 9999999999998864 2445788899999999999999999999887 2126788999999
Q ss_pred HHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchHHHHHHHHh
Q 009066 349 SACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSM 402 (545)
Q Consensus 349 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 402 (545)
..+...|++++|+..++++++.+|++.. ++..++.++...|++++|...+++.
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~P~~~~-~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQAPKDLD-LRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHSTTCHH-HHHHHHHHHTC--------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChH-HHHHHHHHHHHccCHHHHHHHHHHH
Confidence 9999999999999999999999999988 9999999999999999999888764
No 39
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.61 E-value=2e-14 Score=133.43 Aligned_cols=233 Identities=9% Similarity=-0.013 Sum_probs=161.3
Q ss_pred cHHHHHHHhcchhhhccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhCCCC--CC----c
Q 009066 134 AWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLC--KD----T 207 (545)
Q Consensus 134 ~~~~li~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~--~~----~ 207 (545)
.|..+...+ ...|++++|+..|+++.+.. ++...+..+..++...|++++|...+..+++.... ++ .
T Consensus 7 ~~~~~g~~~-----~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 79 (258)
T 3uq3_A 7 KEKAEGNKF-----YKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVIS 79 (258)
T ss_dssp HHHHHHHHH-----HHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHH-----HHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHH
Confidence 345555566 66667777777776666654 55666666666677777777777777666654211 11 4
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 009066 208 TALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG 287 (545)
Q Consensus 208 ~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g 287 (545)
.++..+...|.+.|++++|...|++..+.+.. ...+...|++++|+..++++.... +.+...+..+...+...|
T Consensus 80 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 80 KSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT-----ADILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhcCch-----hHHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhc
Confidence 56667777777777777777777776542111 234566677888888888877642 223455667777788888
Q ss_pred cHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHH
Q 009066 288 LVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKP-QPAIFGTLLSACRVHKRLDLAEFAAM 365 (545)
Q Consensus 288 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~ 365 (545)
++++|...++...+. .+.+...+..+...|.+.|++++|...+++. ...| +...|..+...+...|++++|...++
T Consensus 154 ~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 231 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLD 231 (258)
T ss_dssp CHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 888888888888763 2456778888888888888888888888876 2234 46788888888999999999999999
Q ss_pred HHhcCC------CCCCchhHHHH
Q 009066 366 NLFNLN------PANAAGCYVQL 382 (545)
Q Consensus 366 ~~~~~~------p~~~~~~~~~l 382 (545)
+++++. |++.. .+..+
T Consensus 232 ~a~~~~~~~~~~p~~~~-~~~~l 253 (258)
T 3uq3_A 232 AARTKDAEVNNGSSARE-IDQLY 253 (258)
T ss_dssp HHHHHHHHHHTTTTHHH-HHHHH
T ss_pred HHHHhChhhcCCCchHH-HHHHH
Confidence 988887 66554 44433
No 40
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.60 E-value=3.6e-14 Score=133.29 Aligned_cols=242 Identities=9% Similarity=-0.090 Sum_probs=195.0
Q ss_pred hccCChHHHHHHHHHHHhCCC--CC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHH
Q 009066 148 VENSWAEDGLKLLRMMIGLGI--RP-NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLE 224 (545)
Q Consensus 148 ~~~g~~~~A~~~~~~m~~~~~--~p-d~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~ 224 (545)
...|++++|+..|+++.+... +| +..++..+...+...|++++|...++.+++.. +.+..++..+...|...|+++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHH
Confidence 567889999999999997632 12 45678888889999999999999999999875 456788999999999999999
Q ss_pred HHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHhHH
Q 009066 225 DACKLFLEIQR---KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN 301 (545)
Q Consensus 225 ~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 301 (545)
+|...|+++.+ .+..+|..+...|...|++++|+..|+++.+. .|+.......+..+...|++++|...+.....
T Consensus 95 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 95 AAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 99999998874 46789999999999999999999999999985 45555555555566777999999999988876
Q ss_pred hcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhC-CCCCC-----HhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC
Q 009066 302 DYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKPQ-----PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANA 375 (545)
Q Consensus 302 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~ 375 (545)
. .+++...+ .++..+...++.++|.+.+++. ...|+ ...|..+...+...|++++|...++++++.+|++.
T Consensus 173 ~--~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 249 (275)
T 1xnf_A 173 K--SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNF 249 (275)
T ss_dssp H--SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTC
T ss_pred c--CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhH
Confidence 4 24444444 4777888889999999999877 32232 57889999999999999999999999999999875
Q ss_pred chhHHHHHHHHHHcCCchHHHHHH
Q 009066 376 AGCYVQLANIYAAMKKWDDVARIR 399 (545)
Q Consensus 376 ~~~~~~l~~~~~~~g~~~~a~~~~ 399 (545)
. .+ ..++...|++++|.+.+
T Consensus 250 ~-~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 250 V-EH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp H-HH---HHHHHHHHHHHHC----
T ss_pred H-HH---HHHHHHHHHHHhhHHHH
Confidence 4 33 56777888888887765
No 41
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.59 E-value=9.3e-14 Score=130.34 Aligned_cols=236 Identities=11% Similarity=0.003 Sum_probs=136.7
Q ss_pred hccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhCCCCCCc--ccHHHHHHHHHhcCCHHH
Q 009066 148 VENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDT--TALTPLISMYCKCGDLED 225 (545)
Q Consensus 148 ~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~--~~~~~li~~y~~~g~~~~ 225 (545)
...|++++|+..|++..+.. +.+...+..+..++...|++++|...+..+++.+..++. ..+..+...|.+.|++++
T Consensus 14 ~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~ 92 (272)
T 3u4t_A 14 FKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSL 92 (272)
T ss_dssp HTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHH
Confidence 55556666666666655532 122334555555555666666666666665553211111 125556666666666666
Q ss_pred HHHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHhHHh
Q 009066 226 ACKLFLEIQR---KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVND 302 (545)
Q Consensus 226 A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 302 (545)
|.+.|++..+ .+..+|..+...|...|++++|+..|++..+.. +.+...+..+...+...+++++|.+.|+.+.+.
T Consensus 93 A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 171 (272)
T 3u4t_A 93 AIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL 171 (272)
T ss_dssp HHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6666665542 344566666666666666666666666665531 223344444442333344777777777766653
Q ss_pred cCCCCCHHHHHHHHHHHhHcCC---HHHHHHHHHhC----CCCCC------HhHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 009066 303 YGIAAKPDHYTCMVDLLGRAGK---LVEAVDLIKKM----PFKPQ------PAIFGTLLSACRVHKRLDLAEFAAMNLFN 369 (545)
Q Consensus 303 ~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m----~~~p~------~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 369 (545)
.+.+...+..+...+...|+ .++|...+++. ...|+ ..+|..+...|...|++++|...++++++
T Consensus 172 --~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 249 (272)
T 3u4t_A 172 --KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILA 249 (272)
T ss_dssp --STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 23335566666666666666 55555555544 11133 24677788888999999999999999999
Q ss_pred CCCCCCchhHHHHHHHHHH
Q 009066 370 LNPANAAGCYVQLANIYAA 388 (545)
Q Consensus 370 ~~p~~~~~~~~~l~~~~~~ 388 (545)
++|++.. +...+......
T Consensus 250 ~~p~~~~-a~~~l~~~~~~ 267 (272)
T 3u4t_A 250 LDPTNKK-AIDGLKMKLEH 267 (272)
T ss_dssp HCTTCHH-HHHHHC-----
T ss_pred cCccHHH-HHHHhhhhhcc
Confidence 9999876 55555544433
No 42
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.54 E-value=3.7e-13 Score=121.84 Aligned_cols=192 Identities=14% Similarity=0.018 Sum_probs=97.5
Q ss_pred ccHHHHHHHhcchhhhccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhCCCCCCcccHHH
Q 009066 133 VAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTP 212 (545)
Q Consensus 133 ~~~~~li~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 212 (545)
..|..+...+ .+.|++++|+..|++..+.. +.+...+..+..++...|++++|...++.+++.. +.+...+..
T Consensus 6 ~~~~~lg~~~-----~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~ 78 (217)
T 2pl2_A 6 QNPLRLGVQL-----YALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMV 78 (217)
T ss_dssp HHHHHHHHHH-----HHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHHHHHHH-----HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHH
Confidence 3444444455 55555555555555555432 2234445555555555555555555555555443 233444455
Q ss_pred HHHHHHhc-----------CCHHHHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 009066 213 LISMYCKC-----------GDLEDACKLFLEIQR---KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVA 278 (545)
Q Consensus 213 li~~y~~~-----------g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 278 (545)
+..+|.+. |++++|...|++..+ .+...|..+...|...|++++|+..|++..+.. .+...+..
T Consensus 79 lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~ 156 (217)
T 2pl2_A 79 LSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence 55555555 666666666665542 244556666666666666666666666666554 45555556
Q ss_pred HHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhC
Q 009066 279 LLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335 (545)
Q Consensus 279 ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 335 (545)
+..++...|++++|...|+...+. .+.+...+..+..++.+.|++++|.+.|++.
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQ--APKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 666666666666666666665542 2334555566666666666666666655543
No 43
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.53 E-value=9e-13 Score=122.07 Aligned_cols=195 Identities=15% Similarity=0.086 Sum_probs=86.6
Q ss_pred HHHHHhccCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHHcCCh
Q 009066 178 VLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR---KDVVTWNAMISGYAQHGKG 254 (545)
Q Consensus 178 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~ 254 (545)
+...+...|++++|...++.+++.. +.+..++..+...|.+.|++++|.+.|+++.+ .+...|..+...|...|++
T Consensus 43 ~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~ 121 (252)
T 2ho1_A 43 LGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRY 121 (252)
T ss_dssp HHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHH
Confidence 3333344444444444444443332 22233344444444444444444444444331 2334444444455555555
Q ss_pred HHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHH
Q 009066 255 EKALRLFDKMKDEGMKPD-SITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIK 333 (545)
Q Consensus 255 ~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 333 (545)
++|+..|+++...+..|+ ...+..+..++...|++++|...++.+.+. .+.+...+..+...|...|++++|...++
T Consensus 122 ~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 199 (252)
T 2ho1_A 122 EEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL--NRNQPSVALEMADLLYKEREYVPARQYYD 199 (252)
T ss_dssp HHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 555555555444222232 233344444445555555555555544432 12234444455555555555555555554
Q ss_pred hC-CCC-CCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC
Q 009066 334 KM-PFK-PQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANA 375 (545)
Q Consensus 334 ~m-~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~ 375 (545)
++ ... .+...+..+...+...|+.++|...++++.+..|++.
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 243 (252)
T 2ho1_A 200 LFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSL 243 (252)
T ss_dssp HHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSH
T ss_pred HHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCH
Confidence 44 111 2333444444455555555555555555555555443
No 44
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.53 E-value=1.6e-13 Score=138.88 Aligned_cols=369 Identities=9% Similarity=-0.030 Sum_probs=235.7
Q ss_pred HHHHHHHhCCCChHHHHHHHccCCCC-ChhhHHHHHHHHHcCCCCH---HHHHHHHhcCCCCCeehHHHHHHHHHhCC--
Q 009066 11 SVLAGFAKQRGKLKDAQELFDKIPQP-DVVSYNIMLSCILLNSDDV---VAAFDFFQRLPIKDTASWNTMISGFVQKK-- 84 (545)
Q Consensus 11 ~li~~~~~~g~~~~~A~~~f~~~~~~-~~~~~~~li~~~~~~~g~~---~~A~~~~~~m~~~d~~~~~~li~~~~~~g-- 84 (545)
.+...+.+.|+ +++|.+.|.+..++ +...+..+-..|... |+. ++|+..|++....+...+..+...+...+
T Consensus 8 ~la~~~~~~g~-~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~-g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~ 85 (452)
T 3e4b_A 8 RLANEALKRGD-TVTAQQNYQQLAELGYSEAQVGLADIQVGT-RDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGA 85 (452)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHHTCCTGGGTCC-----------------------------CHHHHHHHHHTC--C
T ss_pred HHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHcc-CCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCC
Confidence 35667777888 99999999887632 344444454555555 777 89999999888667778888888666655
Q ss_pred ---CHHHHHHHHhhCCcC-CHhHHHHHHHHHHHcCChHHHHH---HHhhCC-CCCcccHHHHHHHhcchhhhccCChHHH
Q 009066 85 ---NMAKARDLFLAMPEK-NSVSWSAMISGYIECGQLDKAVE---LFKVAP-VKSVVAWTAMISGYMKFGYVENSWAEDG 156 (545)
Q Consensus 85 ---~~~~a~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~---~f~~~~-~~~~~~~~~li~~~~~~g~~~~g~~~~A 156 (545)
++++|+..|++..++ ++..+..|..+|...+..+++.+ .+.... ..+...+..+...| ...+.++++
T Consensus 86 ~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y-----~~~~~~~~~ 160 (452)
T 3e4b_A 86 TEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLY-----RTQGTYDQH 160 (452)
T ss_dssp CHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHH-----HHHTCGGGG
T ss_pred CCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHH-----HcCCCcccC
Confidence 788999999887754 45678888888888776554433 333222 23556777777777 555644444
Q ss_pred ----HHHHHHHHhCCCCCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhc----CCHHH
Q 009066 157 ----LKLLRMMIGLGIRPNASSLSSVLLGCSHLS---SLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKC----GDLED 225 (545)
Q Consensus 157 ----~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~---~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~----g~~~~ 225 (545)
..+++.... + .|+ .+..+...+...| +.++|...|+...+.| +++...+..|..+|... +++++
T Consensus 161 ~~~a~~~~~~a~~-~-~~~--a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~ 235 (452)
T 3e4b_A 161 LDDVERICKAALN-T-TDI--CYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKT 235 (452)
T ss_dssp HHHHHHHHHHHTT-T-CTT--HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHH
T ss_pred HHHHHHHHHHHHc-C-CHH--HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHH
Confidence 444443332 2 333 7777777888888 8999999999999888 44555546688888665 78999
Q ss_pred HHHHHHhccCCChhhHHHHHHH-H--HHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC-----cHHHHHHHHH
Q 009066 226 ACKLFLEIQRKDVVTWNAMISG-Y--AQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG-----LVDLGIQYFD 297 (545)
Q Consensus 226 A~~~f~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g-----~~~~a~~~~~ 297 (545)
|.+.|++....+...+..+... | ...+++++|+..|++..+.| +......|...|. .| +.++|..+|+
T Consensus 236 A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~ 311 (452)
T 3e4b_A 236 AQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFE 311 (452)
T ss_dssp HHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHH
Confidence 9999998884467778877777 4 45789999999999988876 5556666666665 45 8999999997
Q ss_pred HhHHhcCCCCCHHHHHHHHHHHhH----cCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHh----cCCHHHHHHHHHHHhc
Q 009066 298 SMVNDYGIAAKPDHYTCMVDLLGR----AGKLVEAVDLIKKMPFKPQPAIFGTLLSACRV----HKRLDLAEFAAMNLFN 369 (545)
Q Consensus 298 ~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~ 369 (545)
+.. +.++..+..|..+|.. ..++++|...|++.-...+......|...|.. ..+.++|...+++..+
T Consensus 312 ~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~ 386 (452)
T 3e4b_A 312 KAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKA 386 (452)
T ss_dssp TTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHT
T ss_pred HHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence 764 4466777788887776 34899999999887223455566667766663 4688999999999988
Q ss_pred CCCCCCchhHHHHHHHH--HHcCCchHHHHHHHHhh
Q 009066 370 LNPANAAGCYVQLANIY--AAMKKWDDVARIRLSMK 403 (545)
Q Consensus 370 ~~p~~~~~~~~~l~~~~--~~~g~~~~a~~~~~~m~ 403 (545)
.++... ...+..+. ...++.++|.++.++-+
T Consensus 387 ~g~~~a---~~~l~~l~~~~~~~~~~~a~~~~~~~~ 419 (452)
T 3e4b_A 387 QDTPEA---NDLATQLEAPLTPAQRAEGQRLVQQEL 419 (452)
T ss_dssp TCCHHH---HHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred CCCHHH---HHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 776543 33333332 22234455555555443
No 45
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.53 E-value=1.9e-13 Score=125.69 Aligned_cols=205 Identities=11% Similarity=0.072 Sum_probs=111.6
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHH
Q 009066 174 SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR---KDVVTWNAMISGYAQ 250 (545)
Q Consensus 174 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~ 250 (545)
++..+...+...|++++|...++.+++.. +.+..++..+...|.+.|++++|...|+++.+ .+...|..+...|..
T Consensus 25 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 103 (243)
T 2q7f_A 25 TGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVV 103 (243)
T ss_dssp -----------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHH
Confidence 33334444444455555555555444432 22344445555555555555555555555432 245556666666666
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHH
Q 009066 251 HGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVD 330 (545)
Q Consensus 251 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 330 (545)
.|++++|+..|+++.+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..+...|.+.|++++|.+
T Consensus 104 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~ 180 (243)
T 2q7f_A 104 KEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NENDTEARFQFGMCLANEGMLDEALS 180 (243)
T ss_dssp TTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred hccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHHHHH
Confidence 666666666666666543 224455556666666667777777776666553 23345666666677777777777777
Q ss_pred HHHhC-CCC-CCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHH
Q 009066 331 LIKKM-PFK-PQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLA 383 (545)
Q Consensus 331 ~~~~m-~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~ 383 (545)
.+++. ... .+..+|..+...+...|++++|...++++++..|++.. ++..+.
T Consensus 181 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~-~~~~~~ 234 (243)
T 2q7f_A 181 QFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHML-ALHAKK 234 (243)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHH-HHHHHT
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHH-HHHHHH
Confidence 66655 112 24556666777777777777777777777777776654 444443
No 46
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.53 E-value=6.1e-13 Score=130.70 Aligned_cols=245 Identities=12% Similarity=0.112 Sum_probs=185.4
Q ss_pred ccHHHHHHHhcchhhhccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCc-HHHHHHHHHHHHhCCCCCCcccHH
Q 009066 133 VAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSS-LQLGKQVHQLVFKSPLCKDTTALT 211 (545)
Q Consensus 133 ~~~~~li~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~~-~~~a~~~~~~~~~~g~~~~~~~~~ 211 (545)
..|+.+...+ ...|++++|++.|++.++.. +-+...|..+..++...|+ +++|...++.+++.. +.+..+|.
T Consensus 98 ~a~~~lg~~~-----~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~ 170 (382)
T 2h6f_A 98 DVYDYFRAVL-----QRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWH 170 (382)
T ss_dssp HHHHHHHHHH-----HHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHHHHH-----HHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHH
Confidence 4566666677 77788888888888887643 3355677777777778885 888888888887765 44667788
Q ss_pred HHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc-cC
Q 009066 212 PLISMYCKCGDLEDACKLFLEIQR---KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNH-AG 287 (545)
Q Consensus 212 ~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~-~g 287 (545)
.+..+|.+.|++++|...|+++.+ .+...|..+..++.+.|++++|+..|+++++.... +...|+.+..++.. .|
T Consensus 171 ~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~ 249 (382)
T 2h6f_A 171 HRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTG 249 (382)
T ss_dssp HHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcC
Confidence 888888888888888888888764 46778888888888899999999999998886432 56777777777777 55
Q ss_pred cHHHH-----HHHHHHhHHhcCCCCCHHHHHHHHHHHhHcC--CHHHHHHHHHhCCCCC-CHhHHHHHHHHHHhcC----
Q 009066 288 LVDLG-----IQYFDSMVNDYGIAAKPDHYTCMVDLLGRAG--KLVEAVDLIKKMPFKP-QPAIFGTLLSACRVHK---- 355 (545)
Q Consensus 288 ~~~~a-----~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~p-~~~~~~~li~~~~~~g---- 355 (545)
..++| +..+++.++. -+.+...|..+..+|...| ++++|++.+.++...| +...+..+...|...|
T Consensus 250 ~~~eA~~~~el~~~~~Al~l--~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~ 327 (382)
T 2h6f_A 250 YNDRAVLEREVQYTLEMIKL--VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQC 327 (382)
T ss_dssp SCSHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTC
T ss_pred cchHHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccc
Confidence 54666 4777777653 2445778888888888888 6888988888774445 4567888888888764
Q ss_pred -----CHHHHHHHHHHH-hcCCCCCCchhHHHHHHHHHH
Q 009066 356 -----RLDLAEFAAMNL-FNLNPANAAGCYVQLANIYAA 388 (545)
Q Consensus 356 -----~~~~A~~~~~~~-~~~~p~~~~~~~~~l~~~~~~ 388 (545)
..++|+.+++++ .+++|.... .|..++..+..
T Consensus 328 ~~~~~~~~~A~~~~~~l~~~~DP~r~~-~w~~~~~~l~~ 365 (382)
T 2h6f_A 328 DNKEDILNKALELCEILAKEKDTIRKE-YWRYIGRSLQS 365 (382)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTCGGGHH-HHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhCchhHH-HHHHHHHHHHH
Confidence 258999999999 899998876 77777766543
No 47
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.52 E-value=1.3e-12 Score=120.98 Aligned_cols=196 Identities=11% Similarity=-0.013 Sum_probs=171.5
Q ss_pred cccHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 009066 207 TTALTPLISMYCKCGDLEDACKLFLEIQR---KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC 283 (545)
Q Consensus 207 ~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 283 (545)
...+..+...|...|++++|...|+++.+ .+...|..+...|...|++++|++.|+++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 45677788999999999999999998763 467889999999999999999999999998864 33677888888999
Q ss_pred HccCcHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHhHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHH
Q 009066 284 NHAGLVDLGIQYFDSMVNDYGIAA-KPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKP-QPAIFGTLLSACRVHKRLDLA 360 (545)
Q Consensus 284 ~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~A 360 (545)
...|++++|.++++++.+ .+..| +...+..+...|.+.|++++|.+.+++. ...| +...|..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999876 22344 5678889999999999999999999987 2233 578899999999999999999
Q ss_pred HHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchHHHHHHHHhhhC
Q 009066 361 EFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKEN 405 (545)
Q Consensus 361 ~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 405 (545)
...++++++..|++.. .+..++.+|...|++++|.+.++.+.+.
T Consensus 195 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNAR-SLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHTTSCCCHH-HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCcHH-HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 9999999999998887 8999999999999999999999998764
No 48
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.52 E-value=4.9e-12 Score=118.76 Aligned_cols=220 Identities=12% Similarity=0.013 Sum_probs=128.0
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh----cCCHHHHHHHHHhccC-CChhhHHHHHHHH
Q 009066 174 SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCK----CGDLEDACKLFLEIQR-KDVVTWNAMISGY 248 (545)
Q Consensus 174 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~----~g~~~~A~~~f~~~~~-~~~~~~~~li~~~ 248 (545)
++..+...+...|++++|...++...+. .+...+..+..+|.. .|++++|...|++..+ .+..++..+...|
T Consensus 8 a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~ 84 (273)
T 1ouv_A 8 ELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLY 84 (273)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3444444444445555555555555442 123344445555555 5555555555555443 2445555555566
Q ss_pred HH----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----cCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHh
Q 009066 249 AQ----HGKGEKALRLFDKMKDEGMKPDSITFVALLLACNH----AGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLG 320 (545)
Q Consensus 249 ~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 320 (545)
.. .+++++|+..|++..+.+ +...+..+...+.. .+++++|...+++..+. + +...+..+...|.
T Consensus 85 ~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~ 157 (273)
T 1ouv_A 85 YSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCTILGSLYD 157 (273)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH
T ss_pred hCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHHHHH
Confidence 65 666666666666665543 44555555555555 66666666666666542 2 4455556666666
Q ss_pred H----cCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHh----cCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHH----
Q 009066 321 R----AGKLVEAVDLIKKMPFKPQPAIFGTLLSACRV----HKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAA---- 388 (545)
Q Consensus 321 ~----~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~---- 388 (545)
. .+++++|...|++.-...+...+..+...|.. .+++++|...++++.+.+| .. ++..|+.+|..
T Consensus 158 ~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~-a~~~l~~~~~~g~~~ 234 (273)
T 1ouv_A 158 AGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GG-GCFNLGAMQYNGEGV 234 (273)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HH-HHHHHHHHHHTTSSS
T ss_pred cCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HH-HHHHHHHHHHcCCCc
Confidence 5 66666666666655111345566666666666 7777777777777776655 23 66777777777
Q ss_pred cCCchHHHHHHHHhhhCC
Q 009066 389 MKKWDDVARIRLSMKENN 406 (545)
Q Consensus 389 ~g~~~~a~~~~~~m~~~~ 406 (545)
.+++++|.+.+++..+.|
T Consensus 235 ~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 235 TRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp SCCSTTHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHHHHcC
Confidence 777777777777766544
No 49
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.51 E-value=1.8e-12 Score=117.43 Aligned_cols=199 Identities=14% Similarity=0.023 Sum_probs=97.3
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHH
Q 009066 174 SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR---KDVVTWNAMISGYAQ 250 (545)
Q Consensus 174 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~ 250 (545)
.+..+...+...|++++|.+.++.+.+.. +.+..++..+...|...|++++|.+.|+++.+ .+..+|..+...|..
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 88 (225)
T 2vq2_A 10 IKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCG 88 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 33344444444444444444444444432 22233444444555555555555555544432 234445555555555
Q ss_pred c-CChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHH
Q 009066 251 H-GKGEKALRLFDKMKDEGMKPD-SITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEA 328 (545)
Q Consensus 251 ~-g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 328 (545)
. |++++|+..|+++.+.+..|+ ...+..+..++...|++++|...++.+.+. .+.+...+..+...|.+.|++++|
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A 166 (225)
T 2vq2_A 89 RLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQLGDA 166 (225)
T ss_dssp TTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHH
T ss_pred hcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHH
Confidence 5 555555555555554222222 234444555555555555555555555442 122345555555555555555555
Q ss_pred HHHHHhC-CCC--CCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC
Q 009066 329 VDLIKKM-PFK--PQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANA 375 (545)
Q Consensus 329 ~~~~~~m-~~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~ 375 (545)
.+.+++. ... .+...+..+...+...|+.+.|...++.+.+..|++.
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 216 (225)
T 2vq2_A 167 DYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSE 216 (225)
T ss_dssp HHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCH
Confidence 5555544 111 2334444444555555566655555555555555554
No 50
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.51 E-value=1.3e-12 Score=118.30 Aligned_cols=197 Identities=14% Similarity=0.056 Sum_probs=170.9
Q ss_pred CcccHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 009066 206 DTTALTPLISMYCKCGDLEDACKLFLEIQR---KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLA 282 (545)
Q Consensus 206 ~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 282 (545)
+..++..+...|...|++++|.+.|+++.+ .+...|..+...|...|++++|+..|+++.... +.+..++..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 456778899999999999999999998764 467789999999999999999999999998863 3367788888899
Q ss_pred HHcc-CcHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHhHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHH
Q 009066 283 CNHA-GLVDLGIQYFDSMVNDYGIAA-KPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKP-QPAIFGTLLSACRVHKRLD 358 (545)
Q Consensus 283 ~~~~-g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~ 358 (545)
+... |++++|...++.+.+. +..| +...+..+...|...|++++|...++++ ...| +...|..+...+...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALAD-PTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTS-TTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHcC-cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence 9999 9999999999999862 2333 3678899999999999999999999887 2234 5788999999999999999
Q ss_pred HHHHHHHHHhcCCC-CCCchhHHHHHHHHHHcCCchHHHHHHHHhhhC
Q 009066 359 LAEFAAMNLFNLNP-ANAAGCYVQLANIYAAMKKWDDVARIRLSMKEN 405 (545)
Q Consensus 359 ~A~~~~~~~~~~~p-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 405 (545)
+|...++++++..| ++.. .+..+...+...|+.+++..+++.+.+.
T Consensus 165 ~A~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQAD-DLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHH-HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHH-HHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 99999999999999 7776 8888889999999999999999988753
No 51
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.51 E-value=4.5e-13 Score=123.20 Aligned_cols=197 Identities=11% Similarity=0.084 Sum_probs=156.3
Q ss_pred CCcccHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 009066 205 KDTTALTPLISMYCKCGDLEDACKLFLEIQR---KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLL 281 (545)
Q Consensus 205 ~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 281 (545)
.....+..+...+...|++++|...|+++.+ .+...|..+...|...|++++|+..|+++.+.. +.+...+..+..
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 3456677788899999999999999999864 367789999999999999999999999998863 336778888889
Q ss_pred HHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhC-CCC-CCHhHHHHHHHHHHhcCCHHH
Q 009066 282 ACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFK-PQPAIFGTLLSACRVHKRLDL 359 (545)
Q Consensus 282 a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~li~~~~~~g~~~~ 359 (545)
.+...|++++|.+.++++.+. .+.+...+..+...|.+.|++++|...++++ ... .+...|..+...+...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999999874 3557888999999999999999999999987 222 467889999999999999999
Q ss_pred HHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchHHHHHHHHhhhC
Q 009066 360 AEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKEN 405 (545)
Q Consensus 360 A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 405 (545)
|+..++++++..|++.. ++..++.+|...|++++|.+.++++.+.
T Consensus 178 A~~~~~~~~~~~~~~~~-~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 178 ALSQFAAVTEQDPGHAD-AFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHCTTCHH-HHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcccHH-HHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 99999999999999887 9999999999999999999999998764
No 52
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.51 E-value=6.2e-12 Score=118.09 Aligned_cols=226 Identities=11% Similarity=-0.041 Sum_probs=168.0
Q ss_pred cccHHHHHHHhcchhhhccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc----cCcHHHHHHHHHHHHhCCCCCCc
Q 009066 132 VVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSH----LSSLQLGKQVHQLVFKSPLCKDT 207 (545)
Q Consensus 132 ~~~~~~li~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~ 207 (545)
..++..+...+ ...|++++|++.|++..+. -+...+..+...+.. .+++++|...++...+.+ +.
T Consensus 6 ~~a~~~lg~~~-----~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~ 74 (273)
T 1ouv_A 6 PKELVGLGAKS-----YKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YS 74 (273)
T ss_dssp HHHHHHHHHHH-----HHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred hHHHHHHHHHH-----HhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CH
Confidence 34555566666 6667777777777777663 244556666666666 777777777777777765 55
Q ss_pred ccHHHHHHHHHh----cCCHHHHHHHHHhccC-CChhhHHHHHHHHHH----cCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 009066 208 TALTPLISMYCK----CGDLEDACKLFLEIQR-KDVVTWNAMISGYAQ----HGKGEKALRLFDKMKDEGMKPDSITFVA 278 (545)
Q Consensus 208 ~~~~~li~~y~~----~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 278 (545)
..+..+..+|.. .+++++|...|++..+ .+..++..+...|.. .+++++|+..|++..+.+ +...+..
T Consensus 75 ~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 151 (273)
T 1ouv_A 75 NGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTI 151 (273)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHH
Confidence 666777777777 8888888888877654 366778888888888 888888888888888765 4556666
Q ss_pred HHHHHHc----cCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhH----cCCHHHHHHHHHhCCCCCCHhHHHHHHHH
Q 009066 279 LLLACNH----AGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGR----AGKLVEAVDLIKKMPFKPQPAIFGTLLSA 350 (545)
Q Consensus 279 ll~a~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~li~~ 350 (545)
+...+.. .+++++|...++...+. .++..+..+..+|.. .+++++|.+.|++.-...+...+..+...
T Consensus 152 lg~~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~ 227 (273)
T 1ouv_A 152 LGSLYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAM 227 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 6667776 88899999988887763 346777888888888 89999999988876111336777888888
Q ss_pred HHh----cCCHHHHHHHHHHHhcCCCCCC
Q 009066 351 CRV----HKRLDLAEFAAMNLFNLNPANA 375 (545)
Q Consensus 351 ~~~----~g~~~~A~~~~~~~~~~~p~~~ 375 (545)
|.. .+++++|...++++.+.+|++.
T Consensus 228 ~~~g~~~~~~~~~A~~~~~~a~~~~~~~a 256 (273)
T 1ouv_A 228 QYNGEGVTRNEKQAIENFKKGCKLGAKGA 256 (273)
T ss_dssp HHTTSSSSCCSTTHHHHHHHHHHHTCHHH
T ss_pred HHcCCCcccCHHHHHHHHHHHHHcCCHHH
Confidence 888 8999999999999998888653
No 53
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.50 E-value=2.3e-12 Score=120.67 Aligned_cols=227 Identities=11% Similarity=-0.002 Sum_probs=186.4
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhccC--CCh----hhHHHHHHH
Q 009066 174 SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR--KDV----VTWNAMISG 247 (545)
Q Consensus 174 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~~~----~~~~~li~~ 247 (545)
.+......+...|++++|...++.+++.. +.+...+..+...|...|++++|...|++..+ ++. .+|..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 44556677889999999999999999875 44666888999999999999999999998875 232 248899999
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHH
Q 009066 248 YAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVE 327 (545)
Q Consensus 248 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 327 (545)
|...|++++|+..|++..+.. +.+..++..+...+...|++++|...+++..+. .+.+...+..+...+...+++++
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~ 160 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKEYVK 160 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999863 235578888999999999999999999988753 34557778888834445569999
Q ss_pred HHHHHHhC-CCCC-CHhHHHHHHHHHHhcCC---HHHHHHHHHHHhcCC---CCCC-----chhHHHHHHHHHHcCCchH
Q 009066 328 AVDLIKKM-PFKP-QPAIFGTLLSACRVHKR---LDLAEFAAMNLFNLN---PANA-----AGCYVQLANIYAAMKKWDD 394 (545)
Q Consensus 328 A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~---p~~~-----~~~~~~l~~~~~~~g~~~~ 394 (545)
|.+.|++. ...| +...+..+...+...|+ +++|...++++++.. |+.. . +|..++.+|...|++++
T Consensus 161 A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~ 239 (272)
T 3u4t_A 161 ADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIE-ANEYIAYYYTINRDKVK 239 (272)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHH-HHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHH-HHHHHHHHHHHcCCHHH
Confidence 99999987 3334 46778888888888888 888999999988764 4421 3 78889999999999999
Q ss_pred HHHHHHHhhhC
Q 009066 395 VARIRLSMKEN 405 (545)
Q Consensus 395 a~~~~~~m~~~ 405 (545)
|.+.+++..+.
T Consensus 240 A~~~~~~al~~ 250 (272)
T 3u4t_A 240 ADAAWKNILAL 250 (272)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 99999998764
No 54
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.50 E-value=8.5e-13 Score=133.53 Aligned_cols=336 Identities=13% Similarity=0.057 Sum_probs=200.2
Q ss_pred HHHHcCCCCHHHHHHHHhcCC-CCCeehHHHHHHHHHhCCCH---HHHHHHHhhCCcCCHhHHHHHHHHHHHcC-----C
Q 009066 46 SCILLNSDDVVAAFDFFQRLP-IKDTASWNTMISGFVQKKNM---AKARDLFLAMPEKNSVSWSAMISGYIECG-----Q 116 (545)
Q Consensus 46 ~~~~~~~g~~~~A~~~~~~m~-~~d~~~~~~li~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~li~~~~~~g-----~ 116 (545)
..+.+. |++++|.++|++.. ..+..++..|...|...|+. ++|...|++..+.++..+..|..++...| +
T Consensus 11 ~~~~~~-g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~~ 89 (452)
T 3e4b_A 11 NEALKR-GDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEAE 89 (452)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHTCCTGGGTCC----------------------------CHHHHHHHHHTC--CCHHH
T ss_pred HHHHhC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCcC
Confidence 344556 88888888888765 33555666666777777777 78888888877666677777777555555 6
Q ss_pred hHHHHHHHhhCCCC-CcccHHHHHHHhcchhhhccCCh---HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC----cH
Q 009066 117 LDKAVELFKVAPVK-SVVAWTAMISGYMKFGYVENSWA---EDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLS----SL 188 (545)
Q Consensus 117 ~~~A~~~f~~~~~~-~~~~~~~li~~~~~~g~~~~g~~---~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~----~~ 188 (545)
.++|.+.|++...+ +...+..|...| ...+.. .++++.+.+....| +......+...|...+ +.
T Consensus 90 ~~~A~~~~~~Aa~~g~~~A~~~Lg~~y-----~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~ 161 (452)
T 3e4b_A 90 HHEAESLLKKAFANGEGNTLIPLAMLY-----LQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHL 161 (452)
T ss_dssp HHHHHHHHHHHHHTTCSSCHHHHHHHH-----HHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHH-----HhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCH
Confidence 77888888765533 456777777777 443332 34555555555444 2334445555555555 34
Q ss_pred HHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcC---CHHHHHHHHHhccCC---ChhhHHHHHHHHHHc----CChHHHH
Q 009066 189 QLGKQVHQLVFKSPLCKDTTALTPLISMYCKCG---DLEDACKLFLEIQRK---DVVTWNAMISGYAQH----GKGEKAL 258 (545)
Q Consensus 189 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g---~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~----g~~~~A~ 258 (545)
+.+..++....+. +...+..|..+|.+.| +.++|.+.|++..+. +...+..+...|... +++++|+
T Consensus 162 ~~a~~~~~~a~~~----~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~ 237 (452)
T 3e4b_A 162 DDVERICKAALNT----TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQ 237 (452)
T ss_dssp HHHHHHHHHHTTT----CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHH
T ss_pred HHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHH
Confidence 4444444444332 3336777888888888 788888888776542 333345666666443 5788888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHH-H--HccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcC-----CHHHHHH
Q 009066 259 RLFDKMKDEGMKPDSITFVALLLA-C--NHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAG-----KLVEAVD 330 (545)
Q Consensus 259 ~~~~~m~~~g~~p~~~t~~~ll~a-~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-----~~~~A~~ 330 (545)
..|++.. .| +...+..+... + ...++.++|.++|++..+. | ++..+..|..+|. .| ++++|.+
T Consensus 238 ~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~ 308 (452)
T 3e4b_A 238 ALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAAEA 308 (452)
T ss_dssp HHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHHHH
T ss_pred HHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHHHH
Confidence 8888876 32 33444444444 3 4577888888888877653 3 5667777777776 44 8888888
Q ss_pred HHHhCCCCCCHhHHHHHHHHHHh----cCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHH----cCCchHHHHHHHHh
Q 009066 331 LIKKMPFKPQPAIFGTLLSACRV----HKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAA----MKKWDDVARIRLSM 402 (545)
Q Consensus 331 ~~~~m~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m 402 (545)
.|++.- ..+...+..|...|.. ..++++|...|++..+.+. +. +...|+.+|.. ..+.++|...++..
T Consensus 309 ~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~--~~-A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A 384 (452)
T 3e4b_A 309 HFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ--NS-ADFAIAQLFSQGKGTKPDPLNAYVFSQLA 384 (452)
T ss_dssp HHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC--TT-HHHHHHHHHHSCTTBCCCHHHHHHHHHHH
T ss_pred HHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh--HH-HHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Confidence 888876 5566777777766665 3488888888888776543 33 67778887765 34777888888877
Q ss_pred hhCCC
Q 009066 403 KENNV 407 (545)
Q Consensus 403 ~~~~~ 407 (545)
.+.|.
T Consensus 385 ~~~g~ 389 (452)
T 3e4b_A 385 KAQDT 389 (452)
T ss_dssp HTTCC
T ss_pred HHCCC
Confidence 76654
No 55
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.49 E-value=7.4e-13 Score=124.22 Aligned_cols=237 Identities=8% Similarity=-0.090 Sum_probs=157.6
Q ss_pred cCChHHHHHHHhhCCCC-------CcccHHHHHHHhcchhhhccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC
Q 009066 114 CGQLDKAVELFKVAPVK-------SVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLS 186 (545)
Q Consensus 114 ~g~~~~A~~~f~~~~~~-------~~~~~~~li~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~ 186 (545)
.|++++|.+.|+++... +..+|..+...+ ...|++++|+..|+++.+.. +.+..++..+...+...|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~ 91 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLY-----DSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAG 91 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHH-----HHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTT
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHH-----HHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHcc
Confidence 35566666666554331 234566666666 77777777777777776643 335667777777777777
Q ss_pred cHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhccC--CChhhHHHHHHHHHHcCChHHHHHHHHHH
Q 009066 187 SLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR--KDVVTWNAMISGYAQHGKGEKALRLFDKM 264 (545)
Q Consensus 187 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m 264 (545)
++++|...++.+++.. +.+..++..+..+|.+.|++++|...|+++.+ |+.......+..+...|++++|+..+++.
T Consensus 92 ~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 170 (275)
T 1xnf_A 92 NFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQH 170 (275)
T ss_dssp CHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 7777777777777754 34566777788888888888888888887753 44333444444556678888999888877
Q ss_pred HHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCC-----HHHHHHHHHHHhHcCCHHHHHHHHHhC-CCC
Q 009066 265 KDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK-----PDHYTCMVDLLGRAGKLVEAVDLIKKM-PFK 338 (545)
Q Consensus 265 ~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~ 338 (545)
.... +++...+ .++..+...++.++|...+....+. .|+ ...+..+...|.+.|++++|...|++. ...
T Consensus 171 ~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 245 (275)
T 1xnf_A 171 FEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATD---NTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 245 (275)
T ss_dssp HHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCS---HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcc---cccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 7653 3333333 3566677777888888888776532 232 577888889999999999999999887 445
Q ss_pred CCHhHHHHHHHHHHhcCCHHHHHHHH
Q 009066 339 PQPAIFGTLLSACRVHKRLDLAEFAA 364 (545)
Q Consensus 339 p~~~~~~~li~~~~~~g~~~~A~~~~ 364 (545)
|+. +.....++...|++++|+..+
T Consensus 246 p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 246 VHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp CTT--CHHHHHHHHHHHHHHHC----
T ss_pred chh--HHHHHHHHHHHHHHHhhHHHH
Confidence 533 333355667778888877665
No 56
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.48 E-value=8.8e-13 Score=129.57 Aligned_cols=227 Identities=11% Similarity=0.066 Sum_probs=193.4
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCC-HHHHHHHHHhccC---CChhhHHHHHHH
Q 009066 172 ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGD-LEDACKLFLEIQR---KDVVTWNAMISG 247 (545)
Q Consensus 172 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~-~~~A~~~f~~~~~---~~~~~~~~li~~ 247 (545)
...|..+..++...|++++|...++.+++.. +.+..+|+.+..+|.+.|+ +++|+..|+++.+ .+...|+.+...
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 3467777778889999999999999999875 4567889999999999997 9999999999874 477899999999
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhH-cCCHH
Q 009066 248 YAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGR-AGKLV 326 (545)
Q Consensus 248 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~ 326 (545)
+...|++++|+..|+++++... -+...|..+..++...|++++|+..++++++. -+.+...|+.+..+|.+ .|..+
T Consensus 176 ~~~~g~~~eAl~~~~kal~ldP-~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQDA-KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHccCHHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcch
Confidence 9999999999999999998643 36778888999999999999999999999874 35568899999999999 67657
Q ss_pred HH-----HHHHHhC-CCCC-CHhHHHHHHHHHHhcC--CHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcC-------
Q 009066 327 EA-----VDLIKKM-PFKP-QPAIFGTLLSACRVHK--RLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMK------- 390 (545)
Q Consensus 327 ~A-----~~~~~~m-~~~p-~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g------- 390 (545)
+| ++.|++. .+.| +...|..+...+...| ++++|+..++++ +.+|++.. ++..|+.+|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~-al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPY-LIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHH-HHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHH-HHHHHHHHHHHHhcccccch
Confidence 77 4667665 3445 5678999999999888 689999999998 89999887 8999999999875
Q ss_pred --CchHHHHHHHHh-hh
Q 009066 391 --KWDDVARIRLSM-KE 404 (545)
Q Consensus 391 --~~~~a~~~~~~m-~~ 404 (545)
..++|.++++++ .+
T Consensus 331 ~~~~~~A~~~~~~l~~~ 347 (382)
T 2h6f_A 331 EDILNKALELCEILAKE 347 (382)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 358899999988 44
No 57
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.48 E-value=1.1e-12 Score=130.45 Aligned_cols=255 Identities=12% Similarity=0.055 Sum_probs=163.6
Q ss_pred hccCChHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHhccCcHHHHHHHHHHHHhC----CCCC-CcccHHHHHHHHH
Q 009066 148 VENSWAEDGLKLLRMMIGLGIRPN----ASSLSSVLLGCSHLSSLQLGKQVHQLVFKS----PLCK-DTTALTPLISMYC 218 (545)
Q Consensus 148 ~~~g~~~~A~~~~~~m~~~~~~pd----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----g~~~-~~~~~~~li~~y~ 218 (545)
...|++++|+..|++..+.+ +.+ ...+..+...+...|++++|...++.+++. +..+ ...++..+...|.
T Consensus 20 ~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 98 (406)
T 3sf4_A 20 CKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLK 98 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 55666666666666665532 112 134455555566666666666666554332 1111 1345556667777
Q ss_pred hcCCHHHHHHHHHhccC-----CC----hhhHHHHHHHHHHcCC--------------------hHHHHHHHHHHHHc--
Q 009066 219 KCGDLEDACKLFLEIQR-----KD----VVTWNAMISGYAQHGK--------------------GEKALRLFDKMKDE-- 267 (545)
Q Consensus 219 ~~g~~~~A~~~f~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~~~~~~m~~~-- 267 (545)
..|++++|...|++..+ ++ ..++..+...|...|+ +++|+..+++....
T Consensus 99 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~ 178 (406)
T 3sf4_A 99 VLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVT 178 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777766543 12 3367777777777777 77787777776542
Q ss_pred --CCCCC-HHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCC----HHHHHHHHHHHhHcCCHHHHHHHHHhC----C
Q 009066 268 --GMKPD-SITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK----PDHYTCMVDLLGRAGKLVEAVDLIKKM----P 336 (545)
Q Consensus 268 --g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m----~ 336 (545)
+..|. ..++..+...+...|++++|...+++..+...-.++ ...+..+...|...|++++|...+++. +
T Consensus 179 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 258 (406)
T 3sf4_A 179 ALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLAR 258 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 11111 235666677778888888888888776643211122 336777888888888888888888765 1
Q ss_pred CCCC----HhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC------CchhHHHHHHHHHHcCCchHHHHHHHHhhh
Q 009066 337 FKPQ----PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPAN------AAGCYVQLANIYAAMKKWDDVARIRLSMKE 404 (545)
Q Consensus 337 ~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 404 (545)
..++ ..++..+...+...|++++|...++++++..+.. .. ++..++.+|...|++++|.+.+++..+
T Consensus 259 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 259 QLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGR-ACWSLGNAYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1122 4567778888888899999988888887654322 33 677888889999999999988887654
No 58
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.45 E-value=7.5e-13 Score=134.81 Aligned_cols=209 Identities=11% Similarity=0.031 Sum_probs=172.2
Q ss_pred HHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCH-HHHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHH
Q 009066 188 LQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDL-EDACKLFLEIQR---KDVVTWNAMISGYAQHGKGEKALRLFDK 263 (545)
Q Consensus 188 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~-~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~ 263 (545)
++.+.+.+....+.. +.+...+..+...|...|++ ++|.+.|++..+ .+...|..+...|.+.|++++|+..|++
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 445555555544432 34566777788888888888 888888887653 3577899999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHcc---------CcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHc--------CCHH
Q 009066 264 MKDEGMKPDSITFVALLLACNHA---------GLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRA--------GKLV 326 (545)
Q Consensus 264 m~~~g~~p~~~t~~~ll~a~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------g~~~ 326 (545)
..+. .|+...+..+..++... |++++|...+++..+. .+.+...|..+..+|... |+++
T Consensus 163 al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 163 ALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 9875 57778888888888888 9999999999998874 245688899999999988 9999
Q ss_pred HHHHHHHhC-CCCC----CHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchHHHHHHHH
Q 009066 327 EAVDLIKKM-PFKP----QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLS 401 (545)
Q Consensus 327 ~A~~~~~~m-~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 401 (545)
+|.+.|++. ...| +...|..+...|...|++++|...|+++++++|++.. ++..+..++...|++++|.+.+..
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~-a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPE-PQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-HHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999887 3345 6788999999999999999999999999999999987 899999999999999999876654
Q ss_pred h
Q 009066 402 M 402 (545)
Q Consensus 402 m 402 (545)
+
T Consensus 318 ~ 318 (474)
T 4abn_A 318 T 318 (474)
T ss_dssp C
T ss_pred c
Confidence 4
No 59
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.44 E-value=1.2e-12 Score=130.86 Aligned_cols=255 Identities=11% Similarity=0.003 Sum_probs=165.5
Q ss_pred hccCChHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHhccCcHHHHHHHHHHHHhC----CC-CCCcccHHHHHHHHH
Q 009066 148 VENSWAEDGLKLLRMMIGLGIRPNA----SSLSSVLLGCSHLSSLQLGKQVHQLVFKS----PL-CKDTTALTPLISMYC 218 (545)
Q Consensus 148 ~~~g~~~~A~~~~~~m~~~~~~pd~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----g~-~~~~~~~~~li~~y~ 218 (545)
...|++++|+..|+++.+.+ +.+. ..+..+...+...|++++|...++.+++. +. +....++..+...|.
T Consensus 59 ~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~ 137 (411)
T 4a1s_A 59 CNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLK 137 (411)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHH
Confidence 55666666666666665542 1122 24555555666666666666666655442 11 122345566677777
Q ss_pred hcCCHHHHHHHHHhccCC---------ChhhHHHHHHHHHHcCC-----------------hHHHHHHHHHHHHc----C
Q 009066 219 KCGDLEDACKLFLEIQRK---------DVVTWNAMISGYAQHGK-----------------GEKALRLFDKMKDE----G 268 (545)
Q Consensus 219 ~~g~~~~A~~~f~~~~~~---------~~~~~~~li~~~~~~g~-----------------~~~A~~~~~~m~~~----g 268 (545)
..|++++|...|++..+- ...+|..+...|...|+ +++|+..+++..+. +
T Consensus 138 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~ 217 (411)
T 4a1s_A 138 VMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLG 217 (411)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcC
Confidence 777777777777665421 23467777777777777 77777777776442 1
Q ss_pred CCC-CHHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCC----HHHHHHHHHHHhHcCCHHHHHHHHHhC----CCCC
Q 009066 269 MKP-DSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK----PDHYTCMVDLLGRAGKLVEAVDLIKKM----PFKP 339 (545)
Q Consensus 269 ~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p 339 (545)
-.| ...++..+...+...|++++|...+++..+...-.++ ...+..+...|...|++++|...+++. +...
T Consensus 218 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 297 (411)
T 4a1s_A 218 DRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELG 297 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcC
Confidence 111 1235666677788888888888888776653211111 236777888888888888888888765 1111
Q ss_pred C----HhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC------CchhHHHHHHHHHHcCCchHHHHHHHHhhh
Q 009066 340 Q----PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPAN------AAGCYVQLANIYAAMKKWDDVARIRLSMKE 404 (545)
Q Consensus 340 ~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 404 (545)
+ ..++..+...+...|++++|...++++++..+.. .. ++..++.+|...|++++|.+.+++..+
T Consensus 298 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 298 EREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEAR-ACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH-HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHH-HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 1 4567778888888999999999888887653321 22 677889999999999999999888765
No 60
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.44 E-value=3e-12 Score=123.44 Aligned_cols=256 Identities=13% Similarity=0.055 Sum_probs=170.1
Q ss_pred hccCChHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHhccCcHHHHHHHHHHHHhC----CCC-CCcccHHHHHHHHH
Q 009066 148 VENSWAEDGLKLLRMMIGLGIRPN----ASSLSSVLLGCSHLSSLQLGKQVHQLVFKS----PLC-KDTTALTPLISMYC 218 (545)
Q Consensus 148 ~~~g~~~~A~~~~~~m~~~~~~pd----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----g~~-~~~~~~~~li~~y~ 218 (545)
...|++++|+..|+++.+.. +.+ ...+..+...+...|++++|...+..+.+. +.. ....++..+...|.
T Consensus 16 ~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~ 94 (338)
T 3ro2_A 16 CKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLK 94 (338)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHH
Confidence 55666666666666666542 112 234555556666666666666666655432 111 12345666777777
Q ss_pred hcCCHHHHHHHHHhccC-----CC----hhhHHHHHHHHHHcCC--------------------hHHHHHHHHHHHHc--
Q 009066 219 KCGDLEDACKLFLEIQR-----KD----VVTWNAMISGYAQHGK--------------------GEKALRLFDKMKDE-- 267 (545)
Q Consensus 219 ~~g~~~~A~~~f~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~~~~~~m~~~-- 267 (545)
..|++++|...|++..+ ++ ..++..+...|...|+ +++|+..+++....
T Consensus 95 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~ 174 (338)
T 3ro2_A 95 VLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVT 174 (338)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 77787777777776542 12 2367777777777888 78888887776532
Q ss_pred --CCCCC-HHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCC----HHHHHHHHHHHhHcCCHHHHHHHHHhC----C
Q 009066 268 --GMKPD-SITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK----PDHYTCMVDLLGRAGKLVEAVDLIKKM----P 336 (545)
Q Consensus 268 --g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m----~ 336 (545)
+..|. ..++..+...+...|++++|...++...+...-.++ ...+..+...|...|++++|...+++. +
T Consensus 175 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 254 (338)
T 3ro2_A 175 ALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLAR 254 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 11111 235666677788888888888888876643111111 336778888888999999998888765 1
Q ss_pred CCCC----HhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC------CchhHHHHHHHHHHcCCchHHHHHHHHhhhC
Q 009066 337 FKPQ----PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPAN------AAGCYVQLANIYAAMKKWDDVARIRLSMKEN 405 (545)
Q Consensus 337 ~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 405 (545)
..++ ..++..+...+...|++++|...++++++..|.. .. ++..++.+|...|++++|.+.+++..+.
T Consensus 255 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 255 QLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR-ACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH-HHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred hhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHH-HHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 1122 4567778888899999999999999887654321 22 6778999999999999999999888653
No 61
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.44 E-value=3.3e-11 Score=115.32 Aligned_cols=219 Identities=9% Similarity=0.044 Sum_probs=168.1
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHh-------ccCcH-------HHHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q 009066 154 EDGLKLLRMMIGLGIRPNASSLSSVLLGCS-------HLSSL-------QLGKQVHQLVFKSPLCKDTTALTPLISMYCK 219 (545)
Q Consensus 154 ~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~ 219 (545)
++|+.+|++..... +-+...|......+. ..|++ ++|..+++..++.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 67788888887642 335666776666654 34775 8899999999884224456688889999999
Q ss_pred cCCHHHHHHHHHhccC--C-Chh-hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HccCcHHHHHH
Q 009066 220 CGDLEDACKLFLEIQR--K-DVV-TWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC-NHAGLVDLGIQ 294 (545)
Q Consensus 220 ~g~~~~A~~~f~~~~~--~-~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~-~~~g~~~~a~~ 294 (545)
.|++++|.++|++..+ | +.. .|..++..+.+.|++++|..+|++..+... ++...|....... ...|+.++|..
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999998875 3 343 799999999999999999999999987542 3344444333332 23699999999
Q ss_pred HHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhC-C---CCC--CHhHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 009066 295 YFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-P---FKP--QPAIFGTLLSACRVHKRLDLAEFAAMNLF 368 (545)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~---~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 368 (545)
+|+...+.. +.++..|..+++.+.+.|++++|..+|++. . ..| ....|..++..+...|+.+.|..+++++.
T Consensus 191 ~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 191 IFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999888743 456788899999999999999999999887 2 344 35688999999999999999999999999
Q ss_pred cCCCCCCc
Q 009066 369 NLNPANAA 376 (545)
Q Consensus 369 ~~~p~~~~ 376 (545)
+..|++..
T Consensus 269 ~~~p~~~~ 276 (308)
T 2ond_A 269 TAFREEYE 276 (308)
T ss_dssp HHTTTTTS
T ss_pred HHcccccc
Confidence 99998654
No 62
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.44 E-value=9.7e-12 Score=109.11 Aligned_cols=165 Identities=13% Similarity=0.094 Sum_probs=106.3
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHH
Q 009066 237 DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMV 316 (545)
Q Consensus 237 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li 316 (545)
+...|..+...|.+.|++++|+..|++.++... -+..++..+..++...|++++|...+...... .+.+...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADP-NNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHH
Confidence 344566666666666666666666666665421 24455556666666666666666666666542 233455566666
Q ss_pred HHHhHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchH
Q 009066 317 DLLGRAGKLVEAVDLIKKM-PFKP-QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDD 394 (545)
Q Consensus 317 ~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~ 394 (545)
..+...+++++|...+.+. ...| +...+..+...+...|++++|+..|+++++.+|++.. ++..++.+|.+.|++++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~-~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIR-AYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-HHHHHHHHHHHTTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhh-HHHHHHHHHHHCCCHHH
Confidence 6666677777777666655 2223 4566677777777777777777777777777777766 77777777777777777
Q ss_pred HHHHHHHhhhC
Q 009066 395 VARIRLSMKEN 405 (545)
Q Consensus 395 a~~~~~~m~~~ 405 (545)
|.+.+++..+.
T Consensus 160 A~~~~~~al~~ 170 (184)
T 3vtx_A 160 AVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 77777766553
No 63
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.44 E-value=9.1e-13 Score=131.10 Aligned_cols=219 Identities=12% Similarity=0.004 Sum_probs=140.4
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhCCCC-C----CcccHHHHHHHHHhcCC--------------------HHHHHH
Q 009066 174 SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLC-K----DTTALTPLISMYCKCGD--------------------LEDACK 228 (545)
Q Consensus 174 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~-~----~~~~~~~li~~y~~~g~--------------------~~~A~~ 228 (545)
++..+...+...|++++|...+..+++.... + ...++..+...|...|+ +++|..
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~ 168 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD 168 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence 3444444455555555555555544332100 0 12245556666666666 666666
Q ss_pred HHHhccC-----C----ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcC-CCCC----HHHHHHHHHHHHccCcHHHHHH
Q 009066 229 LFLEIQR-----K----DVVTWNAMISGYAQHGKGEKALRLFDKMKDEG-MKPD----SITFVALLLACNHAGLVDLGIQ 294 (545)
Q Consensus 229 ~f~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~----~~t~~~ll~a~~~~g~~~~a~~ 294 (545)
.|++..+ . ...+|..+...|...|++++|+..|++..+.. -.++ ..++..+...+...|++++|..
T Consensus 169 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 248 (406)
T 3sf4_A 169 FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 248 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 6655432 1 23467777788888888888888888876521 0112 2366677778888888888888
Q ss_pred HHHHhHHhcCCCCC----HHHHHHHHHHHhHcCCHHHHHHHHHhC----CCCCC----HhHHHHHHHHHHhcCCHHHHHH
Q 009066 295 YFDSMVNDYGIAAK----PDHYTCMVDLLGRAGKLVEAVDLIKKM----PFKPQ----PAIFGTLLSACRVHKRLDLAEF 362 (545)
Q Consensus 295 ~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~----~~~~~~li~~~~~~g~~~~A~~ 362 (545)
.++...+...-.++ ..++..+...|...|++++|...+++. +..++ ..++..+...+...|++++|..
T Consensus 249 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 328 (406)
T 3sf4_A 249 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMH 328 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 88876643111111 557778888999999999999888776 11122 4577888889999999999999
Q ss_pred HHHHHhcCCC------CCCchhHHHHHHHHHHcCCch
Q 009066 363 AAMNLFNLNP------ANAAGCYVQLANIYAAMKKWD 393 (545)
Q Consensus 363 ~~~~~~~~~p------~~~~~~~~~l~~~~~~~g~~~ 393 (545)
.+++++++.+ .... ++..++.+|...|+..
T Consensus 329 ~~~~al~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 329 FAEKHLEISREVGDKSGELT-ARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHH-HHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhcCCcchhH-HHHHHHHHHHHhhHhH
Confidence 9999877532 2233 6777888888887664
No 64
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.40 E-value=9.5e-12 Score=109.16 Aligned_cols=168 Identities=15% Similarity=0.088 Sum_probs=139.9
Q ss_pred CCcccHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 009066 205 KDTTALTPLISMYCKCGDLEDACKLFLEIQR---KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLL 281 (545)
Q Consensus 205 ~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 281 (545)
.+..+|..+...|.+.|++++|.+.|++..+ .+..+|..+...|.+.|++++|+..+++..... +.+...+..+..
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 3556788888999999999999999988763 467788999999999999999999999988753 234566667777
Q ss_pred HHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHH
Q 009066 282 ACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKP-QPAIFGTLLSACRVHKRLDL 359 (545)
Q Consensus 282 a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~ 359 (545)
.+...++++.+...+....+. .+.+...+..+...|.+.|++++|++.|++. ...| +..+|..+...+...|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 888899999999999888763 3556788889999999999999999999887 3334 56789999999999999999
Q ss_pred HHHHHHHHhcCCCCCC
Q 009066 360 AEFAAMNLFNLNPANA 375 (545)
Q Consensus 360 A~~~~~~~~~~~p~~~ 375 (545)
|+..|+++++++|++.
T Consensus 160 A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 160 AVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHhCCccCH
Confidence 9999999999998753
No 65
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.39 E-value=1.8e-12 Score=129.48 Aligned_cols=200 Identities=11% Similarity=-0.029 Sum_probs=132.6
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhC----C-CCCCcccHHHHHHHHHhcCC-----------------HHHHHHHHH
Q 009066 174 SLSSVLLGCSHLSSLQLGKQVHQLVFKS----P-LCKDTTALTPLISMYCKCGD-----------------LEDACKLFL 231 (545)
Q Consensus 174 t~~~ll~~~~~~~~~~~a~~~~~~~~~~----g-~~~~~~~~~~li~~y~~~g~-----------------~~~A~~~f~ 231 (545)
.+..+...+...|++++|...+..+++. + .+....++..+...|...|+ +++|.+.|+
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 4444444555555555555555554432 1 01123345556666666676 666666666
Q ss_pred hccC-----C----ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHccCcHHHHHHHHH
Q 009066 232 EIQR-----K----DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGM-KPD----SITFVALLLACNHAGLVDLGIQYFD 297 (545)
Q Consensus 232 ~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~ 297 (545)
+..+ . ...+|..+...|...|++++|+..|++..+... .++ ..++..+...+...|++++|...++
T Consensus 208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 287 (411)
T 4a1s_A 208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYK 287 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 5432 1 234677788888888888888888888765311 112 2266777788889999999999888
Q ss_pred HhHHhcCCC----CCHHHHHHHHHHHhHcCCHHHHHHHHHhC----CCCCC----HhHHHHHHHHHHhcCCHHHHHHHHH
Q 009066 298 SMVNDYGIA----AKPDHYTCMVDLLGRAGKLVEAVDLIKKM----PFKPQ----PAIFGTLLSACRVHKRLDLAEFAAM 365 (545)
Q Consensus 298 ~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~ 365 (545)
+..+...-. .....+..+...|...|++++|...+++. +..++ ..++..+...|...|++++|...++
T Consensus 288 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 367 (411)
T 4a1s_A 288 RTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAE 367 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 776532111 11567788899999999999999998876 11112 3477888889999999999999999
Q ss_pred HHhcCCCC
Q 009066 366 NLFNLNPA 373 (545)
Q Consensus 366 ~~~~~~p~ 373 (545)
+++++.+.
T Consensus 368 ~al~~~~~ 375 (411)
T 4a1s_A 368 QHLQLAXX 375 (411)
T ss_dssp HHHHHCCH
T ss_pred HHHHHHhh
Confidence 98876553
No 66
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.38 E-value=5e-10 Score=117.38 Aligned_cols=400 Identities=11% Similarity=0.042 Sum_probs=269.6
Q ss_pred CCCCccHHHHHHHHHHhCCCChHHHHHHHccCCC--C-ChhhHHHHHHHHHcCCCC---HHHHHHHHhcCC--C---CCe
Q 009066 2 NVKTTVNWNSVLAGFAKQRGKLKDAQELFDKIPQ--P-DVVSYNIMLSCILLNSDD---VVAAFDFFQRLP--I---KDT 70 (545)
Q Consensus 2 ~~~~~~~~~~li~~~~~~g~~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~~g~---~~~A~~~~~~m~--~---~d~ 70 (545)
+|.|..+|..++...-+.+. ++.|+.+|+.+.. | ....|...+..-.+. ++ .+.+.++|++.. . |++
T Consensus 62 np~d~~~W~~yi~~~~~~~~-~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~-~~~~~~~~v~~lfeRal~~~~~~~sv 139 (679)
T 4e6h_A 62 QPTDIFLYVKLLKHHVSLKQ-WKQVYETFDKLHDRFPLMANIWCMRLSLEFDK-MEELDAAVIEPVLARCLSKELGNNDL 139 (679)
T ss_dssp CTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC---CCCHHHHHHHHHHHTCSSSCCCCH
T ss_pred CcCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhh-CCcchHHHHHHHHHHHHHhcCCCCCH
Confidence 56788999999999999998 9999999999873 3 455788888877777 78 999999999887 3 777
Q ss_pred ehHHHHHHHHHhCCCH--------HHHHHHHhhCC------cC-CHhHHHHHHHHHH---------HcCChHHHHHHHhh
Q 009066 71 ASWNTMISGFVQKKNM--------AKARDLFLAMP------EK-NSVSWSAMISGYI---------ECGQLDKAVELFKV 126 (545)
Q Consensus 71 ~~~~~li~~~~~~g~~--------~~a~~~~~~~~------~~-~~~~~~~li~~~~---------~~g~~~~A~~~f~~ 126 (545)
..|..-+....+.++. +...++|+..+ ++ +...|...+.... ..++++.++++|++
T Consensus 140 ~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~r 219 (679)
T 4e6h_A 140 SLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKT 219 (679)
T ss_dssp HHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHH
Confidence 8888877766554443 33447777643 22 3567888877654 24467889999987
Q ss_pred CCCCCc----ccHH---HHHHHhcch-h--h--hccCChHHHHHHHHHHHh--CCCC---------------C-----CH
Q 009066 127 APVKSV----VAWT---AMISGYMKF-G--Y--VENSWAEDGLKLLRMMIG--LGIR---------------P-----NA 172 (545)
Q Consensus 127 ~~~~~~----~~~~---~li~~~~~~-g--~--~~~g~~~~A~~~~~~m~~--~~~~---------------p-----d~ 172 (545)
...-.. ..|. .+...+... + . -....++.|...+.++.. .++. | +.
T Consensus 220 aL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~ 299 (679)
T 4e6h_A 220 LLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDV 299 (679)
T ss_dssp HTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCH
T ss_pred HHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHH
Confidence 654211 2232 222111000 0 0 001123334445544321 1111 1 11
Q ss_pred ---HHHHHHHHHHhccC-------cHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHH-HHHHhccC---CCh
Q 009066 173 ---SSLSSVLLGCSHLS-------SLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC-KLFLEIQR---KDV 238 (545)
Q Consensus 173 ---~t~~~ll~~~~~~~-------~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~-~~f~~~~~---~~~ 238 (545)
..|...+.---..+ ..+.+..+|++.+..- +.+..+|-..+..+...|+.++|. ++|++... .+.
T Consensus 300 ~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~ 378 (679)
T 4e6h_A 300 QQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSA 378 (679)
T ss_dssp HHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCH
Confidence 22333333222221 1344567788887753 456778888888888899999996 99988764 356
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHcCC---------CCC------------HHHHHHHHHHHHccCcHHHHHHHHH
Q 009066 239 VTWNAMISGYAQHGKGEKALRLFDKMKDEGM---------KPD------------SITFVALLLACNHAGLVDLGIQYFD 297 (545)
Q Consensus 239 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---------~p~------------~~t~~~ll~a~~~~g~~~~a~~~~~ 297 (545)
..|-..+...-+.|++++|.++|+++..... .|+ ...|...+....+.|..+.|+.+|.
T Consensus 379 ~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~ 458 (679)
T 4e6h_A 379 VLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFG 458 (679)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 6788888888899999999999999886410 132 2357777777778899999999999
Q ss_pred HhHHhcCCCCCHHHHHHHHHHHhHcC-CHHHHHHHHHhC--CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC-
Q 009066 298 SMVNDYGIAAKPDHYTCMVDLLGRAG-KLVEAVDLIKKM--PFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPA- 373 (545)
Q Consensus 298 ~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m--~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~- 373 (545)
...+.. ..+....|...+.+-.+.| +.+.|.++|+.. ....+...|...+......|+.+.|..+|++++...|+
T Consensus 459 ~A~~~~-~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~ 537 (679)
T 4e6h_A 459 KCRRLK-KLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDS 537 (679)
T ss_dssp HHHHTG-GGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSST
T ss_pred HHHHhc-CCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCH
Confidence 987641 1223445554444444554 589999999877 22235677888888888899999999999999998774
Q ss_pred -CCchhHHHHHHHHHHcCCchHHHHHHHHhhhC
Q 009066 374 -NAAGCYVQLANIYAAMKKWDDVARIRLSMKEN 405 (545)
Q Consensus 374 -~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 405 (545)
.....|...+..-.+.|+.+.+.++.+++.+.
T Consensus 538 ~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~ 570 (679)
T 4e6h_A 538 HLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK 570 (679)
T ss_dssp THHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 22226788888888999999999999999874
No 67
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.37 E-value=9.1e-12 Score=120.01 Aligned_cols=200 Identities=14% Similarity=0.007 Sum_probs=126.0
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhCCCC-CC----cccHHHHHHHHHhcCC--------------------HHHHHH
Q 009066 174 SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLC-KD----TTALTPLISMYCKCGD--------------------LEDACK 228 (545)
Q Consensus 174 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~-~~----~~~~~~li~~y~~~g~--------------------~~~A~~ 228 (545)
++..+...+...|++++|...+....+.... ++ ..++..+...|...|+ +++|.+
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 3444444555555555555555554432100 01 2245556666666666 666666
Q ss_pred HHHhccC-----C----ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHccCcHHHHHH
Q 009066 229 LFLEIQR-----K----DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGM-KPD----SITFVALLLACNHAGLVDLGIQ 294 (545)
Q Consensus 229 ~f~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~ 294 (545)
.|++... + ...++..+...|...|++++|+..+++..+... .++ ..++..+...+...|++++|..
T Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 244 (338)
T 3ro2_A 165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 244 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 6655432 1 234677777788888888888888887764210 111 2356667777888888888888
Q ss_pred HHHHhHHhcCCCCC----HHHHHHHHHHHhHcCCHHHHHHHHHhC----CCCCC----HhHHHHHHHHHHhcCCHHHHHH
Q 009066 295 YFDSMVNDYGIAAK----PDHYTCMVDLLGRAGKLVEAVDLIKKM----PFKPQ----PAIFGTLLSACRVHKRLDLAEF 362 (545)
Q Consensus 295 ~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~----~~~~~~li~~~~~~g~~~~A~~ 362 (545)
.++...+...-.++ ...+..+...|...|++++|...+++. +..++ ..++..+...+...|++++|..
T Consensus 245 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 324 (338)
T 3ro2_A 245 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMH 324 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 88776543111111 556778888899999999998888776 11112 3467788889999999999999
Q ss_pred HHHHHhcCCCC
Q 009066 363 AAMNLFNLNPA 373 (545)
Q Consensus 363 ~~~~~~~~~p~ 373 (545)
.+++++++.+.
T Consensus 325 ~~~~a~~~~~~ 335 (338)
T 3ro2_A 325 FAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHC---
T ss_pred HHHHHHHHHHh
Confidence 99999877654
No 68
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.37 E-value=1.5e-11 Score=121.59 Aligned_cols=221 Identities=9% Similarity=0.017 Sum_probs=109.7
Q ss_pred hccCChHHHHHHHHHHHhCC-CCCC----HHHHHHHHHHHhccCcHHHHHHHHHHHHhCCCC------CCcccHHHHHHH
Q 009066 148 VENSWAEDGLKLLRMMIGLG-IRPN----ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLC------KDTTALTPLISM 216 (545)
Q Consensus 148 ~~~g~~~~A~~~~~~m~~~~-~~pd----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~------~~~~~~~~li~~ 216 (545)
...|++++|+..|++..+.- -.|| ..++..+...+...|+++.|...+...++.-.. ....+++.+...
T Consensus 114 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~ 193 (383)
T 3ulq_A 114 LDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATN 193 (383)
T ss_dssp HHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHH
Confidence 56677777777777766431 0122 235555666666666666666666665542100 012345555666
Q ss_pred HHhcCCHHHHHHHHHhccC-----CC----hhhHHHHHHHHHHcCChHHHHHHHHHHHHc----CC-CCCHHHHHHHHHH
Q 009066 217 YCKCGDLEDACKLFLEIQR-----KD----VVTWNAMISGYAQHGKGEKALRLFDKMKDE----GM-KPDSITFVALLLA 282 (545)
Q Consensus 217 y~~~g~~~~A~~~f~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~p~~~t~~~ll~a 282 (545)
|...|++++|...|++..+ ++ ..+++.+...|...|++++|+..|++..+. +. +....++..+...
T Consensus 194 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~ 273 (383)
T 3ulq_A 194 FLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQI 273 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHH
Confidence 6666666666666655442 11 124555666666666666666666665541 12 1123345555555
Q ss_pred HHccCcHHHHHHHHHHhHHhc---CCCCCHHHHHHHHHHHhHcCC---HHHHHHHHHhCCCCCCH-hHHHHHHHHHHhcC
Q 009066 283 CNHAGLVDLGIQYFDSMVNDY---GIAAKPDHYTCMVDLLGRAGK---LVEAVDLIKKMPFKPQP-AIFGTLLSACRVHK 355 (545)
Q Consensus 283 ~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~p~~-~~~~~li~~~~~~g 355 (545)
+...|++++|...+++..+.. +.+.....+..+...|...|+ +++|+.++++.+..|+. ..+..+...|...|
T Consensus 274 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g 353 (383)
T 3ulq_A 274 HYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYHERK 353 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHCC
Confidence 556666666666555544321 111112223444555555555 55555555554322221 23334444444444
Q ss_pred CHHHHHHHHHHHh
Q 009066 356 RLDLAEFAAMNLF 368 (545)
Q Consensus 356 ~~~~A~~~~~~~~ 368 (545)
++++|...+++++
T Consensus 354 ~~~~A~~~~~~al 366 (383)
T 3ulq_A 354 NFQKASAYFLKVE 366 (383)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 4444444444443
No 69
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.37 E-value=8e-12 Score=123.68 Aligned_cols=225 Identities=12% Similarity=0.027 Sum_probs=174.2
Q ss_pred HHHHHhccCcHHHHHHHHHHHHhC----CCCC-CcccHHHHHHHHHhcCCHHHHHHHHHhccC-----CC-----hhhHH
Q 009066 178 VLLGCSHLSSLQLGKQVHQLVFKS----PLCK-DTTALTPLISMYCKCGDLEDACKLFLEIQR-----KD-----VVTWN 242 (545)
Q Consensus 178 ll~~~~~~~~~~~a~~~~~~~~~~----g~~~-~~~~~~~li~~y~~~g~~~~A~~~f~~~~~-----~~-----~~~~~ 242 (545)
....+...|++++|...+..+.+. +.++ ...++..+...|...|++++|...|++..+ ++ ..+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 455677899999999999999875 2112 346788899999999999999999988753 12 35788
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHccCcHHHHHHHHHHhHHh---cCC-CCCHHHHH
Q 009066 243 AMISGYAQHGKGEKALRLFDKMKDEGM-KPD----SITFVALLLACNHAGLVDLGIQYFDSMVND---YGI-AAKPDHYT 313 (545)
Q Consensus 243 ~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~---~~~-~~~~~~~~ 313 (545)
.+...|...|++++|+..|++..+... .++ ..++..+...+...|++++|...+++..+- .+. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 899999999999999999999875311 122 246778888999999999999999987652 123 33467789
Q ss_pred HHHHHHhHcCCHHHHHHHHHhC----CCCCC---HhHHHHHHHHHHhcCC---HHHHHHHHHHHhcCCCCCCchhHHHHH
Q 009066 314 CMVDLLGRAGKLVEAVDLIKKM----PFKPQ---PAIFGTLLSACRVHKR---LDLAEFAAMNLFNLNPANAAGCYVQLA 383 (545)
Q Consensus 314 ~li~~~~~~g~~~~A~~~~~~m----~~~p~---~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~~l~ 383 (545)
.+...|.+.|++++|.+.+++. +..++ ...+..+...+...|+ .++|...+++. ...|.... .+..|+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~-~~~~la 346 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLED-FAIDVA 346 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHH-HHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHH-HHHHHH
Confidence 9999999999999999999876 11112 2335667778888898 78888888877 33333334 788999
Q ss_pred HHHHHcCCchHHHHHHHHhhh
Q 009066 384 NIYAAMKKWDDVARIRLSMKE 404 (545)
Q Consensus 384 ~~~~~~g~~~~a~~~~~~m~~ 404 (545)
.+|...|++++|...+++..+
T Consensus 347 ~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 347 KYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 999999999999999998864
No 70
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.34 E-value=1.9e-12 Score=123.74 Aligned_cols=236 Identities=13% Similarity=0.084 Sum_probs=114.1
Q ss_pred ccHHHHHHHhcchhhhccCChHHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhC----
Q 009066 133 VAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGL-------GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKS---- 201 (545)
Q Consensus 133 ~~~~~li~~~~~~g~~~~g~~~~A~~~~~~m~~~-------~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~---- 201 (545)
.+|..+...+ ...|++++|+.+|+++.+. ..+.....+..+...+...|++++|...+..+++.
T Consensus 28 ~~~~~l~~~~-----~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 102 (311)
T 3nf1_A 28 RTLHNLVIQY-----ASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKT 102 (311)
T ss_dssp HHHHHHHHHH-----HHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-----HHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 4555566666 6666666666666666542 11112334444444555555555555555544432
Q ss_pred --CCCCCcccHHHHHHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHc------CCCCC-
Q 009066 202 --PLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE------GMKPD- 272 (545)
Q Consensus 202 --g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~- 272 (545)
+..+ ....+|..+...|...|++++|+..|+++.+. +-.|+
T Consensus 103 ~~~~~~------------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 152 (311)
T 3nf1_A 103 LGKDHP------------------------------AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDV 152 (311)
T ss_dssp HCTTCH------------------------------HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred hCCCCh------------------------------HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHH
Confidence 1001 01234455555555555555555555555432 11122
Q ss_pred HHHHHHHHHHHHccCcHHHHHHHHHHhHHhc-----C-CCCCHHHHHHHHHHHhHcCCHHHHHHHHHhC-C---------
Q 009066 273 SITFVALLLACNHAGLVDLGIQYFDSMVNDY-----G-IAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-P--------- 336 (545)
Q Consensus 273 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-----~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~--------- 336 (545)
...+..+...+...|++++|.++++.+.+.. + .+.....+..+...|.+.|++++|.+.++++ .
T Consensus 153 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 232 (311)
T 3nf1_A 153 AKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGS 232 (311)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 2334455555666666666666665554320 0 1112345556666666666666666666554 0
Q ss_pred CCCCH-h------HHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchHHHHHHHHhhh
Q 009066 337 FKPQP-A------IFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKE 404 (545)
Q Consensus 337 ~~p~~-~------~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 404 (545)
..+.. . .+..+...+...+.+.+|...+++.....|.... ++..++.+|...|++++|.+.+++..+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 233 VDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTT-TLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp -----CCHHHHHHHHHHC-------CCSCCCC---------CHHHHH-HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHH-HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 11111 1 1222222333445555566666666666666666 777888888888888888888876653
No 71
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.33 E-value=1.5e-10 Score=110.73 Aligned_cols=212 Identities=8% Similarity=0.048 Sum_probs=171.4
Q ss_pred HHHHHHHHHHHhCCCCCCcccHHHHHHHHHh-------cCCH-------HHHHHHHHhccC---C-ChhhHHHHHHHHHH
Q 009066 189 QLGKQVHQLVFKSPLCKDTTALTPLISMYCK-------CGDL-------EDACKLFLEIQR---K-DVVTWNAMISGYAQ 250 (545)
Q Consensus 189 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~-------~g~~-------~~A~~~f~~~~~---~-~~~~~~~li~~~~~ 250 (545)
++|..+|+++++.. +.+..+|..++..+.. .|++ ++|..+|++..+ | +...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 67788888888764 5667788888887763 5886 999999998765 2 55689999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHh-HcCCHHH
Q 009066 251 HGKGEKALRLFDKMKDEGMKPDS--ITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLG-RAGKLVE 327 (545)
Q Consensus 251 ~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~ 327 (545)
.|++++|..+|++..+. .|+. ..|..+...+.+.|++++|+.+|++..+. .+++...|...+.... ..|++++
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCHHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999984 5543 27888888899999999999999999863 2445566655554433 3699999
Q ss_pred HHHHHHhC-CCC-CCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcC---CCCCCchhHHHHHHHHHHcCCchHHHHHHHHh
Q 009066 328 AVDLIKKM-PFK-PQPAIFGTLLSACRVHKRLDLAEFAAMNLFNL---NPANAAGCYVQLANIYAAMKKWDDVARIRLSM 402 (545)
Q Consensus 328 A~~~~~~m-~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 402 (545)
|.++|++. ... .+...|..++..+...|++++|..+|+++++. .|+.....|..++..+.+.|+.++|..+++++
T Consensus 188 A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 188 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999987 222 36788999999999999999999999999985 55433337888999999999999999999998
Q ss_pred hhC
Q 009066 403 KEN 405 (545)
Q Consensus 403 ~~~ 405 (545)
.+.
T Consensus 268 ~~~ 270 (308)
T 2ond_A 268 FTA 270 (308)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 72
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.32 E-value=3.1e-11 Score=127.95 Aligned_cols=163 Identities=16% Similarity=0.192 Sum_probs=128.9
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHH
Q 009066 237 DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKP-DSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCM 315 (545)
Q Consensus 237 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 315 (545)
+..+|+.+...|.+.|++++|+..|++.++. .| +..++..+..++.+.|++++|++.|++..+. -+.+...|..+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nL 83 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 3456777788888888888888888887774 33 4567777778888888888888888877753 23446788888
Q ss_pred HHHHhHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCch
Q 009066 316 VDLLGRAGKLVEAVDLIKKM-PFKP-QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWD 393 (545)
Q Consensus 316 i~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~ 393 (545)
..+|.+.|++++|++.|++. .+.| +...|..+..+|...|++++|+..|+++++++|++.. ++..|+.+|...|+|+
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~-a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPD-AYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHH-HHHHHHHHHHHTTCCT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH-HHhhhhhHHHhcccHH
Confidence 88888888888888888776 3445 4578888888999999999999999999999998887 8999999999999999
Q ss_pred HHHHHHHHhhh
Q 009066 394 DVARIRLSMKE 404 (545)
Q Consensus 394 ~a~~~~~~m~~ 404 (545)
+|.+.+++..+
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 98888877643
No 73
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.29 E-value=7.5e-12 Score=119.47 Aligned_cols=238 Identities=12% Similarity=0.086 Sum_probs=140.5
Q ss_pred CHhHHHHHHHHHHHcCChHHHHHHHhhCCC--------C---CcccHHHHHHHhcchhhhccCChHHHHHHHHHHHhC--
Q 009066 100 NSVSWSAMISGYIECGQLDKAVELFKVAPV--------K---SVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGL-- 166 (545)
Q Consensus 100 ~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--------~---~~~~~~~li~~~~~~g~~~~g~~~~A~~~~~~m~~~-- 166 (545)
+..++..+...|...|++++|..+|+++.. . ....+..+...| ...|++++|+..|++....
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~-----~~~g~~~~A~~~~~~al~~~~ 100 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVY-----RDQNKYKDAANLLNDALAIRE 100 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-----HHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH-----HHCCCHHHHHHHHHHHHHHHH
Confidence 356888999999999999999999998754 2 235688888899 9999999999999998753
Q ss_pred ----CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHhC------CC-CCCcccHHHHHHHHHhcCCHHHHHHHHHhcc
Q 009066 167 ----GIRP-NASSLSSVLLGCSHLSSLQLGKQVHQLVFKS------PL-CKDTTALTPLISMYCKCGDLEDACKLFLEIQ 234 (545)
Q Consensus 167 ----~~~p-d~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------g~-~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~ 234 (545)
+-.| ...++..+...+...|++++|...+..+.+. +. +....++..+...|...|++++|.+.|+++
T Consensus 101 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a- 179 (311)
T 3nf1_A 101 KTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRA- 179 (311)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH-
T ss_pred HHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH-
Confidence 2122 3456777777888888888888888877653 11 112233444555555555555555555444
Q ss_pred CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHc------CCCCC-HHHHHHHHHHHHccCcHHHHHHHHHHhHHhc----
Q 009066 235 RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE------GMKPD-SITFVALLLACNHAGLVDLGIQYFDSMVNDY---- 303 (545)
Q Consensus 235 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---- 303 (545)
... +..|+ ..++..+..++...|++++|...++++.+..
T Consensus 180 ------------------------------~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 229 (311)
T 3nf1_A 180 ------------------------------LEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHERE 229 (311)
T ss_dssp ------------------------------HHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred ------------------------------HHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Confidence 332 11111 1233344444444555555555544443210
Q ss_pred --CCCC-------CHHHHHHHHHHHhHcCCHHHHHHHHHhCC-CCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCC
Q 009066 304 --GIAA-------KPDHYTCMVDLLGRAGKLVEAVDLIKKMP-FKP-QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNP 372 (545)
Q Consensus 304 --~~~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p 372 (545)
...+ ....+..+...+...+.+.+|...+.... ..| +..+|..+...|...|++++|...+++++++.|
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~ 309 (311)
T 3nf1_A 230 FGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRK 309 (311)
T ss_dssp HC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred CCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 0000 11222233344445556666666666652 223 346788889999999999999999999887766
Q ss_pred C
Q 009066 373 A 373 (545)
Q Consensus 373 ~ 373 (545)
.
T Consensus 310 ~ 310 (311)
T 3nf1_A 310 Q 310 (311)
T ss_dssp -
T ss_pred c
Confidence 4
No 74
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.28 E-value=1.7e-09 Score=106.33 Aligned_cols=257 Identities=11% Similarity=-0.012 Sum_probs=174.4
Q ss_pred hccCChHHHHHHHHHHHhCCCCCCHH----HHHHHHHHHhccCcHHHHHHHHHHHHhCCCC-CC----cccHHHHHHHHH
Q 009066 148 VENSWAEDGLKLLRMMIGLGIRPNAS----SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLC-KD----TTALTPLISMYC 218 (545)
Q Consensus 148 ~~~g~~~~A~~~~~~m~~~~~~pd~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~-~~----~~~~~~li~~y~ 218 (545)
...|++++|...+++........+.. .+..+...+...|++++|...+....+.... .+ ..+...+...|.
T Consensus 25 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 104 (373)
T 1hz4_A 25 INDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILF 104 (373)
T ss_dssp HHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 56777888888887776643222222 3445555667778888888888776653111 11 123456777888
Q ss_pred hcCCHHHHHHHHHhccC-------C----ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCC--C--CHHHHHHHHHHH
Q 009066 219 KCGDLEDACKLFLEIQR-------K----DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMK--P--DSITFVALLLAC 283 (545)
Q Consensus 219 ~~g~~~~A~~~f~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p--~~~t~~~ll~a~ 283 (545)
..|++++|...|++..+ + ....+..+...+...|++++|...+++....... | ...++..+...+
T Consensus 105 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 184 (373)
T 1hz4_A 105 AQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCS 184 (373)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHH
Confidence 88999888888877642 1 1235666778888899999999999988764321 1 234666777788
Q ss_pred HccCcHHHHHHHHHHhHHhcCCCCCHHHHH-----HHHHHHhHcCCHHHHHHHHHhC-CCCCC-----HhHHHHHHHHHH
Q 009066 284 NHAGLVDLGIQYFDSMVNDYGIAAKPDHYT-----CMVDLLGRAGKLVEAVDLIKKM-PFKPQ-----PAIFGTLLSACR 352 (545)
Q Consensus 284 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-----~li~~~~~~g~~~~A~~~~~~m-~~~p~-----~~~~~~li~~~~ 352 (545)
...|++++|...++.......-......+. .++..+...|++++|...+++. ...|. ...+..+...+.
T Consensus 185 ~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~ 264 (373)
T 1hz4_A 185 LARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQI 264 (373)
T ss_dssp HHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHH
Confidence 889999999999988765321111111121 3345577899999999999887 22221 224667778889
Q ss_pred hcCCHHHHHHHHHHHhcCCCCC-----CchhHHHHHHHHHHcCCchHHHHHHHHhhh
Q 009066 353 VHKRLDLAEFAAMNLFNLNPAN-----AAGCYVQLANIYAAMKKWDDVARIRLSMKE 404 (545)
Q Consensus 353 ~~g~~~~A~~~~~~~~~~~p~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 404 (545)
..|++++|...++++....+.. ...++..++.++...|+.++|...+++...
T Consensus 265 ~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 265 LLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 9999999999999887643321 111567788899999999999999988764
No 75
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.28 E-value=1.2e-10 Score=101.66 Aligned_cols=160 Identities=15% Similarity=0.069 Sum_probs=83.0
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 009066 209 ALTPLISMYCKCGDLEDACKLFLEIQR---KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNH 285 (545)
Q Consensus 209 ~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 285 (545)
.+..+...|...|++++|...|+++.+ .+...|..+...+...|++++|...++++.+.. +.+...+..+...+..
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence 344455555556666666666655543 234445555555555555555555555554431 1233344444444444
Q ss_pred cCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHH
Q 009066 286 AGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAM 365 (545)
Q Consensus 286 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 365 (545)
.|++++|.+.++.+.+. .+. +...|..+...+...|++++|...++
T Consensus 89 ~~~~~~A~~~~~~~~~~--~~~--------------------------------~~~~~~~~a~~~~~~~~~~~A~~~~~ 134 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAEA--NPI--------------------------------NFNVRFRLGVALDNLGRFDEAIDSFK 134 (186)
T ss_dssp HTCHHHHHHHHHHHHHH--CTT--------------------------------CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhc--CcH--------------------------------hHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 45555555444444432 122 34445555555555555555555555
Q ss_pred HHhcCCCCCCchhHHHHHHHHHHcCCchHHHHHHHHhhh
Q 009066 366 NLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKE 404 (545)
Q Consensus 366 ~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 404 (545)
++++..|++.. ++..++.+|...|++++|.+.++...+
T Consensus 135 ~~~~~~~~~~~-~~~~la~~~~~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 135 IALGLRPNEGK-VHRAIAFSYEQMGRHEEALPHFKKANE 172 (186)
T ss_dssp HHHHHCTTCHH-HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhcCccchH-HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55555555544 555666666666666666666555543
No 76
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.27 E-value=1.4e-10 Score=118.07 Aligned_cols=209 Identities=14% Similarity=0.040 Sum_probs=148.1
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcH-HHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHH
Q 009066 153 AEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSL-QLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFL 231 (545)
Q Consensus 153 ~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~ 231 (545)
.++++..+.+..... +.+...+..+..++...|++ ++|.+.++.+++.. +.+...+..+...|.+.|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 455666666655432 33566677777777777777 88888877777764 3456677778888888888888888887
Q ss_pred hccC--CChhhHHHHHHHHHHc---------CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc--------CcHHHH
Q 009066 232 EIQR--KDVVTWNAMISGYAQH---------GKGEKALRLFDKMKDEGMKPDSITFVALLLACNHA--------GLVDLG 292 (545)
Q Consensus 232 ~~~~--~~~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~--------g~~~~a 292 (545)
+..+ |+...|..+...|... |++++|+..|++..+.. +-+...+..+..++... |++++|
T Consensus 162 ~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A 240 (474)
T 4abn_A 162 GALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQA 240 (474)
T ss_dssp HHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHH
Confidence 7754 5566777777777777 88888888888877753 22456677777777777 788888
Q ss_pred HHHHHHhHHhcCCC---CCHHHHHHHHHHHhHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHH
Q 009066 293 IQYFDSMVNDYGIA---AKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKP-QPAIFGTLLSACRVHKRLDLAEFAAMN 366 (545)
Q Consensus 293 ~~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~ 366 (545)
...|++..+. .+ .+...|..+..+|...|++++|.+.|++. ...| +...|..+...+...|++++|...+.+
T Consensus 241 ~~~~~~al~~--~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 241 LSAYAQAEKV--DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHH--CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHh--CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 8888887763 12 36777888888888888888888888776 3334 445677777778777877777765543
No 77
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.27 E-value=9.7e-11 Score=115.62 Aligned_cols=224 Identities=11% Similarity=0.028 Sum_probs=160.0
Q ss_pred HHHHhccCcHHHHHHHHHHHHhCCCC-C----CcccHHHHHHHHHhcCCHHHHHHHHHhccC-----CC-----hhhHHH
Q 009066 179 LLGCSHLSSLQLGKQVHQLVFKSPLC-K----DTTALTPLISMYCKCGDLEDACKLFLEIQR-----KD-----VVTWNA 243 (545)
Q Consensus 179 l~~~~~~~~~~~a~~~~~~~~~~g~~-~----~~~~~~~li~~y~~~g~~~~A~~~f~~~~~-----~~-----~~~~~~ 243 (545)
...+...|++++|...+..+.+.... + ...++..+...|...|+++.|...+++..+ ++ ..+++.
T Consensus 108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 187 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV 187 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence 34456788899999988888764211 1 234677788888999999988888877652 12 346788
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHhHHhc---CCCCCHHHHHHH
Q 009066 244 MISGYAQHGKGEKALRLFDKMKDE----GMKP-DSITFVALLLACNHAGLVDLGIQYFDSMVNDY---GIAAKPDHYTCM 315 (545)
Q Consensus 244 li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~~l 315 (545)
+...|...|++++|++.|++..+. +-.+ ...++..+..++...|++++|...+++..+.. +.+....++..+
T Consensus 188 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 267 (378)
T 3q15_A 188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGL 267 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHH
Confidence 888899999999999999887653 1111 12466777788889999999999998876511 223336778888
Q ss_pred HHHHhHcCCHHHHHHHHHhC----CC--CCC-HhHHHHHHHHHHhcCC---HHHHHHHHHHHhcCCCCCCchhHHHHHHH
Q 009066 316 VDLLGRAGKLVEAVDLIKKM----PF--KPQ-PAIFGTLLSACRVHKR---LDLAEFAAMNLFNLNPANAAGCYVQLANI 385 (545)
Q Consensus 316 i~~~~~~g~~~~A~~~~~~m----~~--~p~-~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~~l~~~ 385 (545)
...|.+.|++++|...+++. +. .|. ...+..+...+...++ +++|...+++. ...|.... .+..++..
T Consensus 268 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~-~~~~la~~ 345 (378)
T 3q15_A 268 SWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEA-CARSAAAV 345 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHH-HHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHH-HHHHHHHH
Confidence 99999999999999998876 11 122 2345556666667777 77787777763 22233333 67789999
Q ss_pred HHHcCCchHHHHHHHHhhh
Q 009066 386 YAAMKKWDDVARIRLSMKE 404 (545)
Q Consensus 386 ~~~~g~~~~a~~~~~~m~~ 404 (545)
|...|++++|.+.+++..+
T Consensus 346 y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 346 FESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 9999999999999887653
No 78
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.26 E-value=1.9e-10 Score=104.64 Aligned_cols=186 Identities=12% Similarity=-0.035 Sum_probs=90.3
Q ss_pred cccHHHHHHHHHhcCCHHHHHHHHHhccC----CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHH
Q 009066 207 TTALTPLISMYCKCGDLEDACKLFLEIQR----KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKP-DSITFVALLL 281 (545)
Q Consensus 207 ~~~~~~li~~y~~~g~~~~A~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~ 281 (545)
+..+..+...|.+.|++++|...|++..+ ++...|..+..++...|++++|+..|++..+. .| +...+..+..
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~ 84 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGKSA 84 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHHHH
Confidence 34445555555555555555555555432 34444444555555555555555555555543 22 2334444555
Q ss_pred HHHccCcHHHHHHHHHHhHHhcCCCCCH-------HHHHHHHHHHhHcCCHHHHHHHHHhC-CCCCC---HhHHHHHHHH
Q 009066 282 ACNHAGLVDLGIQYFDSMVNDYGIAAKP-------DHYTCMVDLLGRAGKLVEAVDLIKKM-PFKPQ---PAIFGTLLSA 350 (545)
Q Consensus 282 a~~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~---~~~~~~li~~ 350 (545)
++...|++++|...+++..+.. +.+. ..|..+...+...|++++|.+.|++. ...|+ ...|..+...
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAV--PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence 5555555555555555555421 2222 33444555555555555555555544 33343 2344444444
Q ss_pred HHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchHHHHHHHHhhh
Q 009066 351 CRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKE 404 (545)
Q Consensus 351 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 404 (545)
+.. .+...++++..+.+.... .|..+ .....+.+++|...+++..+
T Consensus 163 ~~~-----~~~~~~~~a~~~~~~~~~-~~~~~--~~~~~~~~~~A~~~~~~a~~ 208 (228)
T 4i17_A 163 FYN-----NGADVLRKATPLASSNKE-KYASE--KAKADAAFKKAVDYLGEAVT 208 (228)
T ss_dssp HHH-----HHHHHHHHHGGGTTTCHH-HHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHH-----HHHHHHHHHHhcccCCHH-HHHHH--HHHHHHHHHHHHHHHHHHhh
Confidence 432 223334444444443322 22222 22233445788888877765
No 79
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.25 E-value=3.5e-10 Score=98.54 Aligned_cols=160 Identities=16% Similarity=0.102 Sum_probs=125.5
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHH
Q 009066 172 ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR---KDVVTWNAMISGY 248 (545)
Q Consensus 172 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~ 248 (545)
...+..+...+...|++++|...++.+.+.. +.+..++..+...|...|++++|...|+++.+ .+...|..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 3466777888899999999999999988764 45677888999999999999999999998763 4678899999999
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHH
Q 009066 249 AQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEA 328 (545)
Q Consensus 249 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 328 (545)
...|++++|...|+++.... +.+...+..+..++...|++++|...++.+.+. .+.+...+..+...|...|++++|
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGL--RPNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999998863 346677777888888889999999988887764 233445555555555555555555
Q ss_pred HHHHHhC
Q 009066 329 VDLIKKM 335 (545)
Q Consensus 329 ~~~~~~m 335 (545)
.+.+++.
T Consensus 164 ~~~~~~~ 170 (186)
T 3as5_A 164 LPHFKKA 170 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555543
No 80
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.23 E-value=3.8e-10 Score=102.63 Aligned_cols=204 Identities=9% Similarity=0.035 Sum_probs=158.9
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHH
Q 009066 170 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR---KDVVTWNAMIS 246 (545)
Q Consensus 170 pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~ 246 (545)
.|+..+......+...|++++|...|..+++...+++...+..+...|.+.|++++|...|++..+ .+...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 466788888899999999999999999999987547777777799999999999999999998864 35678999999
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCC---HHHHHHHH
Q 009066 247 GYAQHGKGEKALRLFDKMKDEGMKPDS-------ITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK---PDHYTCMV 316 (545)
Q Consensus 247 ~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~li 316 (545)
.|...|++++|+..|++..+... .+. ..+..+...+...|++++|.+.|++..+ ..|+ ...+..+.
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVP-GNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHHH
Confidence 99999999999999999998532 233 4577777888899999999999999875 3554 67788888
Q ss_pred HHHhHcCCH--HHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHH
Q 009066 317 DLLGRAGKL--VEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANI 385 (545)
Q Consensus 317 ~~~~~~g~~--~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~ 385 (545)
.+|...|+. ++|..+ . ..+...+..+. ....+.+++|...++++++++|++.. +...+..+
T Consensus 161 ~~~~~~~~~~~~~a~~~----~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~-~~~~l~~i 223 (228)
T 4i17_A 161 VLFYNNGADVLRKATPL----A-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTE-IKQMQDQV 223 (228)
T ss_dssp HHHHHHHHHHHHHHGGG----T-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc----c-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHH-HHHHHHHH
Confidence 888776653 332221 1 12344444333 34556789999999999999999876 55555443
No 81
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.22 E-value=8.3e-10 Score=108.88 Aligned_cols=222 Identities=9% Similarity=0.034 Sum_probs=163.3
Q ss_pred hccCChHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHhccCcHHHHHHHHHHHHhCCC-----CC-CcccHHHHHHH
Q 009066 148 VENSWAEDGLKLLRMMIGLGI-RPN----ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPL-----CK-DTTALTPLISM 216 (545)
Q Consensus 148 ~~~g~~~~A~~~~~~m~~~~~-~pd----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-----~~-~~~~~~~li~~ 216 (545)
...|++++|+..|++..+.-. .+| ..++..+..++...|+++.|...+...++... .+ ...+++.+...
T Consensus 112 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~ 191 (378)
T 3q15_A 112 FDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGN 191 (378)
T ss_dssp HHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHH
T ss_pred HHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHH
Confidence 667888888888887765311 122 34566677778888888888888877765311 11 23466778888
Q ss_pred HHhcCCHHHHHHHHHhccC-----CC----hhhHHHHHHHHHHcCChHHHHHHHHHHHHc----CCCCCHHHHHHHHHHH
Q 009066 217 YCKCGDLEDACKLFLEIQR-----KD----VVTWNAMISGYAQHGKGEKALRLFDKMKDE----GMKPDSITFVALLLAC 283 (545)
Q Consensus 217 y~~~g~~~~A~~~f~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~~t~~~ll~a~ 283 (545)
|...|++++|.+.|++..+ ++ ..+++.+...|...|++++|+..|++.... +.+....++..+...+
T Consensus 192 y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 271 (378)
T 3q15_A 192 YDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTL 271 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHH
Confidence 8999999999888887653 12 346788888999999999999999998761 2222356777888899
Q ss_pred HccCcHHHHHHHHHHhHHhcC---CCCCHHHHHHHHHHHhHcCC---HHHHHHHHHhCCCCCCH-hHHHHHHHHHHhcCC
Q 009066 284 NHAGLVDLGIQYFDSMVNDYG---IAAKPDHYTCMVDLLGRAGK---LVEAVDLIKKMPFKPQP-AIFGTLLSACRVHKR 356 (545)
Q Consensus 284 ~~~g~~~~a~~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~p~~-~~~~~li~~~~~~g~ 356 (545)
...|++++|...+++..+... .+.....+..+...|...|+ +++|+..+++.+..|+. ..+..+...|...|+
T Consensus 272 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~ 351 (378)
T 3q15_A 272 CKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCH 351 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHCCC
Confidence 999999999999998876422 22224556777778888888 89999999987544443 466778889999999
Q ss_pred HHHHHHHHHHHhc
Q 009066 357 LDLAEFAAMNLFN 369 (545)
Q Consensus 357 ~~~A~~~~~~~~~ 369 (545)
+++|...++++++
T Consensus 352 ~~~A~~~~~~al~ 364 (378)
T 3q15_A 352 FEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988764
No 82
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.19 E-value=1.3e-08 Score=106.83 Aligned_cols=369 Identities=10% Similarity=0.036 Sum_probs=247.6
Q ss_pred CChhhHHHHHHHHHcCCCCHHHHHHHHhcCC---CCCeehHHHHHHHHHhCCC---HHHHHHHHhhCCc-----CCHhHH
Q 009066 36 PDVVSYNIMLSCILLNSDDVVAAFDFFQRLP---IKDTASWNTMISGFVQKKN---MAKARDLFLAMPE-----KNSVSW 104 (545)
Q Consensus 36 ~~~~~~~~li~~~~~~~g~~~~A~~~~~~m~---~~d~~~~~~li~~~~~~g~---~~~a~~~~~~~~~-----~~~~~~ 104 (545)
.|..+|..++..+.+. +.++.|..+|+++. +.....|..-+..-.+.|+ ++.+.++|++.+. +++..|
T Consensus 64 ~d~~~W~~yi~~~~~~-~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW 142 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSL-KQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLW 142 (679)
T ss_dssp TCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHH
T ss_pred CCHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 4777899999988888 99999999999988 5566788888888888898 9999999999873 778889
Q ss_pred HHHHHHHHHcCCh--------HHHHHHHhhCC------CC-CcccHHHHHHHhcchh----hhccCChHHHHHHHHHHHh
Q 009066 105 SAMISGYIECGQL--------DKAVELFKVAP------VK-SVVAWTAMISGYMKFG----YVENSWAEDGLKLLRMMIG 165 (545)
Q Consensus 105 ~~li~~~~~~g~~--------~~A~~~f~~~~------~~-~~~~~~~li~~~~~~g----~~~~g~~~~A~~~~~~m~~ 165 (545)
...+....+.++. +..+++|+... .+ +...|...+.-....+ ...+++.+.+..+|++.+.
T Consensus 143 ~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 143 LSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHh
Confidence 8888877776654 33447776521 22 3457877776541100 0123456788899999885
Q ss_pred CCCCCCHHHHH---HHHHHHh----------ccCcHHHHHHHHHHHHh--CCC----CCC-------------------c
Q 009066 166 LGIRPNASSLS---SVLLGCS----------HLSSLQLGKQVHQLVFK--SPL----CKD-------------------T 207 (545)
Q Consensus 166 ~~~~pd~~t~~---~ll~~~~----------~~~~~~~a~~~~~~~~~--~g~----~~~-------------------~ 207 (545)
.....-..+|. ..-.... ....++.|+..+..+.. .++ +.. .
T Consensus 223 iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql 302 (679)
T 4e6h_A 223 QPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQL 302 (679)
T ss_dssp SCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHH
T ss_pred CccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHH
Confidence 21111122332 2211110 01233445555554322 121 110 1
Q ss_pred ccHHHHHHHHHhcC-------CHHHHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHH-HHHHHHHHcCCCCCHHHH
Q 009066 208 TALTPLISMYCKCG-------DLEDACKLFLEIQR---KDVVTWNAMISGYAQHGKGEKAL-RLFDKMKDEGMKPDSITF 276 (545)
Q Consensus 208 ~~~~~li~~y~~~g-------~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~-~~~~~m~~~g~~p~~~t~ 276 (545)
..|...+..--..+ ..+.+..+|++... .+...|-..+.-+...|+.++|. .+|++.... .+.+...+
T Consensus 303 ~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lw 381 (679)
T 4e6h_A 303 LIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLA 381 (679)
T ss_dssp HHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHH
T ss_pred HHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHH
Confidence 23444444332222 12334567777653 36778998888888999999997 999999874 33455556
Q ss_pred HHHHHHHHccCcHHHHHHHHHHhHHhcC--------CCC------------CHHHHHHHHHHHhHcCCHHHHHHHHHhCC
Q 009066 277 VALLLACNHAGLVDLGIQYFDSMVNDYG--------IAA------------KPDHYTCMVDLLGRAGKLVEAVDLIKKMP 336 (545)
Q Consensus 277 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~--------~~~------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 336 (545)
...+......|+++.|+++|+.+..... -.| ...+|...+....+.|.++.|..+|.+..
T Consensus 382 l~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~ 461 (679)
T 4e6h_A 382 FSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCR 461 (679)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6777778889999999999999876310 013 23468888888889999999999999872
Q ss_pred -C--CCCHhHHHHHHHHHHhc-CCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchHHHHHHHHhhhCCC
Q 009066 337 -F--KPQPAIFGTLLSACRVH-KRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNV 407 (545)
Q Consensus 337 -~--~p~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 407 (545)
. .+....|...+..-.+. ++.+.|..+|+..++..|++.. .+...+......|+.+.|+.+|++......
T Consensus 462 ~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~-~w~~y~~fe~~~~~~~~AR~lferal~~~~ 535 (679)
T 4e6h_A 462 RLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGE-YINKYLDFLIYVNEESQVKSLFESSIDKIS 535 (679)
T ss_dssp HTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHTCHHHHHHHHHHHTTTSS
T ss_pred HhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchH-HHHHHHHHHHhCCCHHHHHHHHHHHHHhcC
Confidence 1 12233444333333343 4589999999999999998876 677888888899999999999999877543
No 83
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.17 E-value=6.9e-10 Score=105.19 Aligned_cols=201 Identities=11% Similarity=0.023 Sum_probs=142.4
Q ss_pred cHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhccC-----CC----hhhHHHHHHHHHHcCChHHH
Q 009066 187 SLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR-----KD----VVTWNAMISGYAQHGKGEKA 257 (545)
Q Consensus 187 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~-----~~----~~~~~~li~~~~~~g~~~~A 257 (545)
++++|...|..+ ...|...|++++|...|++..+ .+ ..+|+.+...|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 477777777665 4457778888888888876643 12 45788888999999999999
Q ss_pred HHHHHHHHHcCC---CCC--HHHHHHHHHHHHcc-CcHHHHHHHHHHhHHhcCCCCC----HHHHHHHHHHHhHcCCHHH
Q 009066 258 LRLFDKMKDEGM---KPD--SITFVALLLACNHA-GLVDLGIQYFDSMVNDYGIAAK----PDHYTCMVDLLGRAGKLVE 327 (545)
Q Consensus 258 ~~~~~~m~~~g~---~p~--~~t~~~ll~a~~~~-g~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~ 327 (545)
+..|++...... .+. ..++..+..+|... |++++|...|++..+...-..+ ..++..+...|.+.|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 999988775311 111 34677888888886 9999999999988753211111 4568889999999999999
Q ss_pred HHHHHHhC-CCCCC---H-----hHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCch----hHHHHHHHHH--HcCCc
Q 009066 328 AVDLIKKM-PFKPQ---P-----AIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAG----CYVQLANIYA--AMKKW 392 (545)
Q Consensus 328 A~~~~~~m-~~~p~---~-----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~----~~~~l~~~~~--~~g~~ 392 (545)
|+..|++. ...|+ . ..|..+..++...|++++|+..+++.++++|+.... .+..++.+|. ..+++
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~ 256 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQL 256 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTH
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Confidence 99999887 22232 1 156778888999999999999999999999976531 1344566664 45668
Q ss_pred hHHHHHHHHh
Q 009066 393 DDVARIRLSM 402 (545)
Q Consensus 393 ~~a~~~~~~m 402 (545)
++|.+.|+.+
T Consensus 257 ~~A~~~~~~~ 266 (292)
T 1qqe_A 257 SEHCKEFDNF 266 (292)
T ss_dssp HHHHHHHTTS
T ss_pred HHHHHHhccC
Confidence 8888777554
No 84
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.15 E-value=2.6e-10 Score=106.89 Aligned_cols=164 Identities=15% Similarity=0.135 Sum_probs=81.9
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHhHHhc-----C-CC
Q 009066 240 TWNAMISGYAQHGKGEKALRLFDKMKDE------GMKP-DSITFVALLLACNHAGLVDLGIQYFDSMVNDY-----G-IA 306 (545)
Q Consensus 240 ~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-----~-~~ 306 (545)
+|..+...|...|++++|+..|++.... .-.| ...++..+...+...|++++|...+++..+.. . .+
T Consensus 87 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 166 (283)
T 3edt_B 87 TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDP 166 (283)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 4455555555555555555555554432 1112 23345555556666666666666666554420 0 11
Q ss_pred CCHHHHHHHHHHHhHcCCHHHHHHHHHhC----------CCCCC-HhHHHHHHHHHHhcCC------HHHHHHHHHHHhc
Q 009066 307 AKPDHYTCMVDLLGRAGKLVEAVDLIKKM----------PFKPQ-PAIFGTLLSACRVHKR------LDLAEFAAMNLFN 369 (545)
Q Consensus 307 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m----------~~~p~-~~~~~~li~~~~~~g~------~~~A~~~~~~~~~ 369 (545)
.....+..+...|.+.|++++|...+++. ...+. ...|..+.......+. +..+...++....
T Consensus 167 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (283)
T 3edt_B 167 NVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV 246 (283)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC
Confidence 22445566666666666666666666554 11222 2233333333333222 2233333333333
Q ss_pred CCCCCCchhHHHHHHHHHHcCCchHHHHHHHHhhh
Q 009066 370 LNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKE 404 (545)
Q Consensus 370 ~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 404 (545)
..|.... ++..++.+|...|++++|.+++++..+
T Consensus 247 ~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 247 DSPTVNT-TLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp CCHHHHH-HHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCHHHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3344444 677788888888888888888877654
No 85
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.12 E-value=3.7e-10 Score=119.77 Aligned_cols=161 Identities=15% Similarity=0.171 Sum_probs=115.4
Q ss_pred cccHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 009066 207 TTALTPLISMYCKCGDLEDACKLFLEIQR---KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLAC 283 (545)
Q Consensus 207 ~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 283 (545)
...++.|...|.+.|++++|++.|++..+ .+..+|+.+...|.+.|++++|+..|++.++... -+...+..+..++
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P-~~~~a~~nLg~~l 87 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP-TFADAYSNMGNTL 87 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHH
Confidence 45566677777777777777777776653 3566777777777777888888888877776421 2356677777777
Q ss_pred HccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHH
Q 009066 284 NHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKP-QPAIFGTLLSACRVHKRLDLAE 361 (545)
Q Consensus 284 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~A~ 361 (545)
...|++++|++.|++..+. -+.+...|..+..+|.+.|++++|++.|++. .+.| +...|..+...+...|++++|.
T Consensus 88 ~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~ 165 (723)
T 4gyw_A 88 KEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYD 165 (723)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHH
T ss_pred HHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHH
Confidence 7888888888888777653 2344677778888888888888888888776 3445 4567778888888888888888
Q ss_pred HHHHHHhcC
Q 009066 362 FAAMNLFNL 370 (545)
Q Consensus 362 ~~~~~~~~~ 370 (545)
+.+++++++
T Consensus 166 ~~~~kal~l 174 (723)
T 4gyw_A 166 ERMKKLVSI 174 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 888777654
No 86
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.09 E-value=1.7e-09 Score=102.47 Aligned_cols=168 Identities=10% Similarity=-0.015 Sum_probs=108.6
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHhccC-----CC----hhhHHHHHHHHHHc-CChHHHHHHHHHHHHcCCC-CC----
Q 009066 208 TALTPLISMYCKCGDLEDACKLFLEIQR-----KD----VVTWNAMISGYAQH-GKGEKALRLFDKMKDEGMK-PD---- 272 (545)
Q Consensus 208 ~~~~~li~~y~~~g~~~~A~~~f~~~~~-----~~----~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~-p~---- 272 (545)
.+++.+..+|.+.|++++|...|++..+ .+ ..+|+.+...|... |++++|+..|++..+.... .+
T Consensus 78 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~ 157 (292)
T 1qqe_A 78 NTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALS 157 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHH
Confidence 3445555556666666666555555432 11 34677778888885 8888888888887763111 01
Q ss_pred HHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCH-----HHHHHHHHHHhHcCCHHHHHHHHHhC-CCCCCHh----
Q 009066 273 SITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKP-----DHYTCMVDLLGRAGKLVEAVDLIKKM-PFKPQPA---- 342 (545)
Q Consensus 273 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~-----~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~---- 342 (545)
..++..+...+...|++++|...|+...+...-.+.. ..|..+..+|...|++++|...|++. .+.|+..
T Consensus 158 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 237 (292)
T 1qqe_A 158 NKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRE 237 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHH
Confidence 3457777888888899999998888887642111111 25677788888899999999988887 4444321
Q ss_pred --HHHHHHHHHH--hcCCHHHHHHHHHHHhcCCCCCC
Q 009066 343 --IFGTLLSACR--VHKRLDLAEFAAMNLFNLNPANA 375 (545)
Q Consensus 343 --~~~~li~~~~--~~g~~~~A~~~~~~~~~~~p~~~ 375 (545)
.+..++.++. ..+++++|+..|+++..++|...
T Consensus 238 ~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~ 274 (292)
T 1qqe_A 238 SNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKI 274 (292)
T ss_dssp HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHH
Confidence 3444555554 45678888888888888877653
No 87
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.05 E-value=4.4e-08 Score=96.16 Aligned_cols=226 Identities=9% Similarity=-0.049 Sum_probs=167.6
Q ss_pred HHHHhccCcHHHHHHHHHHHHhCCCCCCcc----cHHHHHHHHHhcCCHHHHHHHHHhccC-----CCh----hhHHHHH
Q 009066 179 LLGCSHLSSLQLGKQVHQLVFKSPLCKDTT----ALTPLISMYCKCGDLEDACKLFLEIQR-----KDV----VTWNAMI 245 (545)
Q Consensus 179 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~----~~~~li~~y~~~g~~~~A~~~f~~~~~-----~~~----~~~~~li 245 (545)
...+...|++++|...++..+......+.. +++.+...|...|++++|...+++... .+. .+++.+.
T Consensus 21 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 100 (373)
T 1hz4_A 21 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 100 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 344567899999999999988865322222 456778889999999999999998763 222 3466778
Q ss_pred HHHHHcCChHHHHHHHHHHHHc----CCC--CC-HHHHHHHHHHHHccCcHHHHHHHHHHhHHhcC---CCCCHHHHHHH
Q 009066 246 SGYAQHGKGEKALRLFDKMKDE----GMK--PD-SITFVALLLACNHAGLVDLGIQYFDSMVNDYG---IAAKPDHYTCM 315 (545)
Q Consensus 246 ~~~~~~g~~~~A~~~~~~m~~~----g~~--p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~---~~~~~~~~~~l 315 (545)
..+...|++++|...+++.... +.. |. ...+..+...+...|++++|...+++...... .......+..+
T Consensus 101 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 180 (373)
T 1hz4_A 101 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 180 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHH
Confidence 8899999999999999998753 222 32 34556677888999999999999998765321 11124577889
Q ss_pred HHHHhHcCCHHHHHHHHHhC----CCCCCHhHHHH-----HHHHHHhcCCHHHHHHHHHHHhcCCCCCCc---hhHHHHH
Q 009066 316 VDLLGRAGKLVEAVDLIKKM----PFKPQPAIFGT-----LLSACRVHKRLDLAEFAAMNLFNLNPANAA---GCYVQLA 383 (545)
Q Consensus 316 i~~~~~~g~~~~A~~~~~~m----~~~p~~~~~~~-----li~~~~~~g~~~~A~~~~~~~~~~~p~~~~---~~~~~l~ 383 (545)
...+...|++++|...+++. +...+...|.. .+..+...|++++|...+++.....|.+.. ..+..++
T Consensus 181 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la 260 (373)
T 1hz4_A 181 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA 260 (373)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHH
Confidence 99999999999999999876 21112122322 334477999999999999999887765421 1456888
Q ss_pred HHHHHcCCchHHHHHHHHhhh
Q 009066 384 NIYAAMKKWDDVARIRLSMKE 404 (545)
Q Consensus 384 ~~~~~~g~~~~a~~~~~~m~~ 404 (545)
.++...|++++|...++...+
T Consensus 261 ~~~~~~g~~~~A~~~l~~a~~ 281 (373)
T 1hz4_A 261 RAQILLGEFEPAEIVLEELNE 281 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999988754
No 88
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.04 E-value=1.8e-08 Score=93.53 Aligned_cols=206 Identities=11% Similarity=0.082 Sum_probs=130.1
Q ss_pred CcccHHHHHHHHHhcCCHHHHHHHHHhccC--C-C---hhhHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCC-HHHHH
Q 009066 206 DTTALTPLISMYCKCGDLEDACKLFLEIQR--K-D---VVTWNAMISGYAQHGKGEKALRLFDKMKDEGM-KPD-SITFV 277 (545)
Q Consensus 206 ~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~-~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~-~~t~~ 277 (545)
+...+-.+...+.+.|++++|...|+++.+ | + ...+..+..+|.+.|++++|+..|++..+... .|+ ...+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 344555566677777777777777777654 2 2 44566667777777777777777777766422 122 23444
Q ss_pred HHHHHHHc--------cCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhCCCCCCHhHHHHHHH
Q 009066 278 ALLLACNH--------AGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLS 349 (545)
Q Consensus 278 ~ll~a~~~--------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~ 349 (545)
.+..++.. .|++++|...|+++.+.+ +.+.....++.......+.+ ...+..+..
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~~~~~~~~---------------~~~~~~la~ 156 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQKIRELRAKL---------------ARKQYEAAR 156 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHHHHH---------------HHHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHHHHHHHHHH---------------HHHHHHHHH
Confidence 55555555 677777777777766542 11222222221111111111 112466778
Q ss_pred HHHhcCCHHHHHHHHHHHhcCCCCCCc--hhHHHHHHHHHHc----------CCchHHHHHHHHhhhCCCccCCceeEEE
Q 009066 350 ACRVHKRLDLAEFAAMNLFNLNPANAA--GCYVQLANIYAAM----------KKWDDVARIRLSMKENNVVKMPGYSWIE 417 (545)
Q Consensus 350 ~~~~~g~~~~A~~~~~~~~~~~p~~~~--~~~~~l~~~~~~~----------g~~~~a~~~~~~m~~~~~~~~~~~s~~~ 417 (545)
.|...|++++|+..++++++..|++.. .++..++.+|... |++++|...++++.+.. |
T Consensus 157 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~----p------ 226 (261)
T 3qky_A 157 LYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF----P------ 226 (261)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC----T------
T ss_pred HHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC----C------
Confidence 899999999999999999999998532 2688899999877 89999999999987632 1
Q ss_pred ECCEEEEEecCCCCCCChHHHHHHHHHHHHHHHH
Q 009066 418 VGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKL 451 (545)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~m~~ 451 (545)
.+|...+....+.++...+.+
T Consensus 227 -------------~~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 227 -------------DSPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp -------------TCTHHHHHHHHHHHHHHHHHH
T ss_pred -------------CChHHHHHHHHHHHHHHHHHH
Confidence 235555666666666666544
No 89
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.02 E-value=3.6e-09 Score=99.01 Aligned_cols=223 Identities=12% Similarity=0.029 Sum_probs=140.5
Q ss_pred hccCChHHHHHHHHHHHh-------CCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhC------CC-CCCcccHHHH
Q 009066 148 VENSWAEDGLKLLRMMIG-------LGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKS------PL-CKDTTALTPL 213 (545)
Q Consensus 148 ~~~g~~~~A~~~~~~m~~-------~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------g~-~~~~~~~~~l 213 (545)
...|++++|+.+|++..+ ...+....++..+...+...|++++|...+..+++. +. +....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 334555555555554443 121223456677777778888888888888777654 21 2234567778
Q ss_pred HHHHHhcCCHHHHHHHHHhccC-------C----ChhhHHHHHHHHHHcCChHHHHHHHHHHHHc------CCCCC-HHH
Q 009066 214 ISMYCKCGDLEDACKLFLEIQR-------K----DVVTWNAMISGYAQHGKGEKALRLFDKMKDE------GMKPD-SIT 275 (545)
Q Consensus 214 i~~y~~~g~~~~A~~~f~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~-~~t 275 (545)
...|...|++++|...|++..+ + ...+|..+...|...|++++|+..|++..+. +-.|+ ..+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 8888888888888888877652 1 2456788888888899999999999888764 11332 456
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHhHHhc------CCCC-CHHHHHHHHHHHhHc------CCHHHHHHHHHhCC-CCC-C
Q 009066 276 FVALLLACNHAGLVDLGIQYFDSMVNDY------GIAA-KPDHYTCMVDLLGRA------GKLVEAVDLIKKMP-FKP-Q 340 (545)
Q Consensus 276 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~------~~~~-~~~~~~~li~~~~~~------g~~~~A~~~~~~m~-~~p-~ 340 (545)
+..+..++...|++++|...+++..+.. ...+ ....+..+...+... ..+.++...++..+ ..| .
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 7777888889999999999998876531 0111 222333333333332 23455555555553 223 2
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHhcC
Q 009066 341 PAIFGTLLSACRVHKRLDLAEFAAMNLFNL 370 (545)
Q Consensus 341 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 370 (545)
..++..+...|...|++++|...++++++.
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 357888999999999999999999998765
No 90
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.99 E-value=1.4e-08 Score=82.93 Aligned_cols=130 Identities=16% Similarity=0.218 Sum_probs=67.6
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHH
Q 009066 240 TWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLL 319 (545)
Q Consensus 240 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 319 (545)
.|..+...+...|++++|+.+|+++.+.. +.+...+..+...+...|++++|...++.+.+. .+.+...+..+...+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHH
Confidence 35555566666666666666666665542 223445555555555666666666666655542 123344445555555
Q ss_pred hHcCCHHHHHHHHHhC-CCC-CCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCC
Q 009066 320 GRAGKLVEAVDLIKKM-PFK-PQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNP 372 (545)
Q Consensus 320 ~~~g~~~~A~~~~~~m-~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p 372 (545)
...|++++|.+.++++ ... .+...|..+...+...|++++|...++++++.+|
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 134 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHST
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCC
Confidence 5555555555555444 111 2334445555555555555555555555554444
No 91
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.98 E-value=1.1e-07 Score=88.76 Aligned_cols=174 Identities=9% Similarity=-0.021 Sum_probs=115.5
Q ss_pred HHHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHhHH
Q 009066 226 ACKLFLEIQR---KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKP-DSITFVALLLACNHAGLVDLGIQYFDSMVN 301 (545)
Q Consensus 226 A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 301 (545)
|...|++... ++..++..+..++...|++++|++++.+.+..+..+ +...+..++..+.+.|+.+.|.+.++.|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 5666666543 345555667777778888888888888776654322 344555666778888888888888888764
Q ss_pred hcCCCC-----CHHHHHHHHHH--HhHcC--CHHHHHHHHHhC-CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcC-
Q 009066 302 DYGIAA-----KPDHYTCMVDL--LGRAG--KLVEAVDLIKKM-PFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNL- 370 (545)
Q Consensus 302 ~~~~~~-----~~~~~~~li~~--~~~~g--~~~~A~~~~~~m-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~- 370 (545)
. .| +..+...|+.+ ....| ++.+|..+|+++ ...|+..+-..++.++.+.|++++|+..++.+.+.
T Consensus 165 ~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 165 A---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp H---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred c---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 3 55 24444455544 22233 788888888887 32354333344444777888888888888877665
Q ss_pred ---------CCCCCchhHHHHHHHHHHcCCchHHHHHHHHhhhC
Q 009066 371 ---------NPANAAGCYVQLANIYAAMKKWDDVARIRLSMKEN 405 (545)
Q Consensus 371 ---------~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 405 (545)
+|+++. ++..++..+...|+ +|.+++.++++.
T Consensus 242 p~~~~k~~~~p~~~~-~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 242 YSVEQKENAVLYKPT-FLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHTTTCHHHHSSHHH-HHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred ccccccccCCCCCHH-HHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 477766 77677777777776 777888877764
No 92
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.98 E-value=1.4e-08 Score=94.29 Aligned_cols=201 Identities=12% Similarity=0.023 Sum_probs=143.3
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHHHhCCCCCC---cccHHHHHHHHHhcCCHHHHHHHHHhccC--C-C---hhh
Q 009066 170 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKD---TTALTPLISMYCKCGDLEDACKLFLEIQR--K-D---VVT 240 (545)
Q Consensus 170 pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~-~---~~~ 240 (545)
.+...+......+...|++++|...|+.+++... .+ ...+..+..+|.+.|++++|...|++..+ | + ..+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGR-THEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCS-CSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-CCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 3566777788888999999999999999998752 23 56777899999999999999999999874 2 1 346
Q ss_pred HHHHHHHHHH--------cCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHH
Q 009066 241 WNAMISGYAQ--------HGKGEKALRLFDKMKDEGMKPDSI-TFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDH 311 (545)
Q Consensus 241 ~~~li~~~~~--------~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 311 (545)
+..+..++.. .|++++|+..|++..... |+.. .... ...+..+... ....
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a--------------~~~~~~~~~~-----~~~~ 150 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDA--------------TQKIRELRAK-----LARK 150 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHH--------------HHHHHHHHHH-----HHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHH--------------HHHHHHHHHH-----HHHH
Confidence 7778888888 999999999999998853 3321 1111 1111111110 1123
Q ss_pred HHHHHHHHhHcCCHHHHHHHHHhC-CCCCC----HhHHHHHHHHHHhc----------CCHHHHHHHHHHHhcCCCCCCc
Q 009066 312 YTCMVDLLGRAGKLVEAVDLIKKM-PFKPQ----PAIFGTLLSACRVH----------KRLDLAEFAAMNLFNLNPANAA 376 (545)
Q Consensus 312 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~li~~~~~~----------g~~~~A~~~~~~~~~~~p~~~~ 376 (545)
+..+...|.+.|++++|...|+++ ...|+ ...+..+..+|... |++++|+..++++++..|++..
T Consensus 151 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 230 (261)
T 3qky_A 151 QYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPL 230 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChH
Confidence 567788889999999999998877 22233 34677777777765 8899999999999999999863
Q ss_pred --hhHHHHHHHHHHcCCc
Q 009066 377 --GCYVQLANIYAAMKKW 392 (545)
Q Consensus 377 --~~~~~l~~~~~~~g~~ 392 (545)
.+...+..++...+++
T Consensus 231 ~~~a~~~l~~~~~~~~~~ 248 (261)
T 3qky_A 231 LRTAEELYTRARQRLTEL 248 (261)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 1333444444444443
No 93
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.96 E-value=3.4e-09 Score=112.75 Aligned_cols=169 Identities=10% Similarity=-0.067 Sum_probs=133.8
Q ss_pred HhcCCHHHHHHHHHhcc-----------CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 009066 218 CKCGDLEDACKLFLEIQ-----------RKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHA 286 (545)
Q Consensus 218 ~~~g~~~~A~~~f~~~~-----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 286 (545)
...|++++|.+.|++.. ..+...|..+...|.+.|++++|+..|++..+.. +-+...+..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 66788899988888876 2456778888888899999999999999888753 22556777777888889
Q ss_pred CcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHH
Q 009066 287 GLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKP-QPAIFGTLLSACRVHKRLDLAEFAA 364 (545)
Q Consensus 287 g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~ 364 (545)
|++++|...|++..+. .+.+...+..+..+|.+.|++++ .+.|++. ...| +...|..+..++...|++++|+..+
T Consensus 481 g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp TCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999888764 24457788888899999999988 8888876 3334 5678888888999999999999999
Q ss_pred HHHhcCCCCCCchhHHHHHHHHHHcCC
Q 009066 365 MNLFNLNPANAAGCYVQLANIYAAMKK 391 (545)
Q Consensus 365 ~~~~~~~p~~~~~~~~~l~~~~~~~g~ 391 (545)
+++++++|++.. ++..++.++...|+
T Consensus 558 ~~al~l~P~~~~-a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 558 DEVPPTSRHFTT-ARLTSAVTLLSGRS 583 (681)
T ss_dssp HTSCTTSTTHHH-HHHHHHHHTC----
T ss_pred HhhcccCcccHH-HHHHHHHHHHccCC
Confidence 999999998877 88888888876655
No 94
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.95 E-value=5.2e-08 Score=88.23 Aligned_cols=183 Identities=10% Similarity=0.040 Sum_probs=116.9
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHhccC--CC----hhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-CCH-HHHHHH
Q 009066 208 TALTPLISMYCKCGDLEDACKLFLEIQR--KD----VVTWNAMISGYAQHGKGEKALRLFDKMKDEGMK-PDS-ITFVAL 279 (545)
Q Consensus 208 ~~~~~li~~y~~~g~~~~A~~~f~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~-~t~~~l 279 (545)
..+..+...+.+.|++++|...|+++.+ |+ ...+..+..+|.+.|++++|+..|+++.+.... |.. ..+..+
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~ 84 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMR 84 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHH
Confidence 3445567778888888888888888764 32 246777788888888888888888888774322 111 133333
Q ss_pred HHHHHc------------------cCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhCCCCCCH
Q 009066 280 LLACNH------------------AGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQP 341 (545)
Q Consensus 280 l~a~~~------------------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~ 341 (545)
..++.. .|+.++|...|+.+.+.+ +-+...+.++..+..-.+.+.
T Consensus 85 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l~~~~~~~~--------------- 147 (225)
T 2yhc_A 85 GLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRLVFLKDRLA--------------- 147 (225)
T ss_dssp HHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHHHHHHHHHH---------------
T ss_pred HHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHHHHHHHHHH---------------
Confidence 333332 345566666666555431 112222211111000000000
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCc--hhHHHHHHHHHHcCCchHHHHHHHHhhhCCC
Q 009066 342 AIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAA--GCYVQLANIYAAMKKWDDVARIRLSMKENNV 407 (545)
Q Consensus 342 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 407 (545)
.....+...+...|++++|+..|+++++..|+++. .++..++.+|.+.|++++|.+.++.+...+.
T Consensus 148 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 148 KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 01134566788999999999999999999998752 1688999999999999999999999887653
No 95
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.95 E-value=1.4e-08 Score=82.93 Aligned_cols=128 Identities=17% Similarity=0.181 Sum_probs=111.7
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhC-CC-CCCHhHHHHHHHHHH
Q 009066 275 TFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PF-KPQPAIFGTLLSACR 352 (545)
Q Consensus 275 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~li~~~~ 352 (545)
.+..+...+...|++++|..+++.+.+. .+.+...+..+...+...|++++|...++++ .. ..+...|..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence 4566777888999999999999998864 2456788889999999999999999999987 22 245678899999999
Q ss_pred hcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchHHHHHHHHhhhC
Q 009066 353 VHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKEN 405 (545)
Q Consensus 353 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 405 (545)
..|++++|...++++.+..|.+.. ++..++.+|...|++++|.+.++++.+.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~~~~-~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPRSAE-AWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHH-HHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCCChH-HHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 999999999999999999998877 8999999999999999999999988753
No 96
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.94 E-value=8.4e-08 Score=89.56 Aligned_cols=178 Identities=12% Similarity=0.096 Sum_probs=116.3
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhccCC-----ChhhHHHHHHHHHHcCChHHHHHHHHHHH
Q 009066 191 GKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRK-----DVVTWNAMISGYAQHGKGEKALRLFDKMK 265 (545)
Q Consensus 191 a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 265 (545)
+...++..++.+ +++......+..+|...|++++|++++.+.... +...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 445555555544 334444456677777777777777777776432 34566677778888888888888888887
Q ss_pred HcCCCC-----CHHHHHHHHHH--HHccC--cHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhC-
Q 009066 266 DEGMKP-----DSITFVALLLA--CNHAG--LVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM- 335 (545)
Q Consensus 266 ~~g~~p-----~~~t~~~ll~a--~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m- 335 (545)
+. .| +..+...+..+ ....| +.++|..+|+++... .|+......+..++.+.|++++|.+.++.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 64 55 35555555555 22223 788888888887653 344333334444778888888888887654
Q ss_pred CC----------CC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCc
Q 009066 336 PF----------KP-QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAA 376 (545)
Q Consensus 336 ~~----------~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 376 (545)
.. .| |+.+...+|......|+ +|.++++++.+..|+++.
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~ 288 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAF 288 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHH
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChH
Confidence 11 13 45566566666666776 888999999999998863
No 97
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.94 E-value=3.1e-08 Score=93.40 Aligned_cols=176 Identities=10% Similarity=-0.033 Sum_probs=140.5
Q ss_pred HHHHHHHHHhccCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHhHHh
Q 009066 223 LEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVND 302 (545)
Q Consensus 223 ~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 302 (545)
.+...+.+......+...+..+...+.+.|++++|+..|++..... +-+...+..+..++...|++++|...++.+...
T Consensus 102 ~~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~ 180 (287)
T 3qou_A 102 EEAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ 180 (287)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG
T ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh
Confidence 4455566666665566778888889999999999999999998853 225567778888999999999999999988754
Q ss_pred cCCCCCHHHHHHH-HHHHhHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC--Cch
Q 009066 303 YGIAAKPDHYTCM-VDLLGRAGKLVEAVDLIKKM-PFKP-QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPAN--AAG 377 (545)
Q Consensus 303 ~~~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~ 377 (545)
.|+....... ...+.+.++.++|...+++. ...| +...+..+...+...|++++|+..++++++.+|++ ..
T Consensus 181 ---~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~- 256 (287)
T 3qou_A 181 ---DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQ- 256 (287)
T ss_dssp ---GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGH-
T ss_pred ---hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccch-
Confidence 4554433333 33466778888888888776 3334 67889999999999999999999999999999987 66
Q ss_pred hHHHHHHHHHHcCCchHHHHHHHHhh
Q 009066 378 CYVQLANIYAAMKKWDDVARIRLSMK 403 (545)
Q Consensus 378 ~~~~l~~~~~~~g~~~~a~~~~~~m~ 403 (545)
++..|+.+|...|+.++|...+++..
T Consensus 257 a~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 257 TRXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 89999999999999999998887653
No 98
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.92 E-value=3.5e-08 Score=94.07 Aligned_cols=221 Identities=9% Similarity=0.007 Sum_probs=150.1
Q ss_pred ccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHH
Q 009066 149 ENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACK 228 (545)
Q Consensus 149 ~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~ 228 (545)
..|++++|.+++++..+.. +.. + +...++++.|...|..+ ...|...|++++|..
T Consensus 3 ~~~~~~eA~~~~~~a~k~~-~~~------~---~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYL-KTS------F---MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHH-CCC------S---SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHc-ccc------c---cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 3566777888877766431 111 0 11146677776666554 456677788888887
Q ss_pred HHHhccC-----CC----hhhHHHHHHHHHHcCChHHHHHHHHHHHHcC---CCCC--HHHHHHHHHHHHccCcHHHHHH
Q 009066 229 LFLEIQR-----KD----VVTWNAMISGYAQHGKGEKALRLFDKMKDEG---MKPD--SITFVALLLACNHAGLVDLGIQ 294 (545)
Q Consensus 229 ~f~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~--~~t~~~ll~a~~~~g~~~~a~~ 294 (545)
.|.+..+ .+ ..+|+.+...|...|++++|+..|++..+.- -.|. ..++..+...|.. |++++|..
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 7776643 11 3467888888999999999999998876531 1122 3467777788888 99999999
Q ss_pred HHHHhHHhcCCCC----CHHHHHHHHHHHhHcCCHHHHHHHHHhC----CCCCC----HhHHHHHHHHHHhcCCHHHHHH
Q 009066 295 YFDSMVNDYGIAA----KPDHYTCMVDLLGRAGKLVEAVDLIKKM----PFKPQ----PAIFGTLLSACRVHKRLDLAEF 362 (545)
Q Consensus 295 ~~~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~----~~~~~~li~~~~~~g~~~~A~~ 362 (545)
.|++..+.+.-.. ...++..+...|.+.|++++|+..|++. +..++ ...+..++..+...|++++|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9988765321111 1467888999999999999999999876 11122 2356667777888899999999
Q ss_pred HHHHHhcCCCCCCch----hHHHHHHHHHHcCCchHHHH
Q 009066 363 AAMNLFNLNPANAAG----CYVQLANIYAAMKKWDDVAR 397 (545)
Q Consensus 363 ~~~~~~~~~p~~~~~----~~~~l~~~~~~~g~~~~a~~ 397 (545)
.+++.+ +.|..... ....++.++ ..|+.+.+..
T Consensus 217 ~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 217 CVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 999999 99876531 233455555 5677665555
No 99
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.89 E-value=3.6e-08 Score=88.08 Aligned_cols=128 Identities=9% Similarity=0.014 Sum_probs=98.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcC
Q 009066 244 MISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAG 323 (545)
Q Consensus 244 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 323 (545)
+...|.+.|++++|+..|++..+.. +-+...+..+..++...|++++|...|++..+. -+.+...+..+...|...|
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLTA 136 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHh
Confidence 8888999999999999999998853 225677888888999999999999999998874 2456788888888887665
Q ss_pred C--HHHHHHHHHhCCCCCCH--hHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC
Q 009066 324 K--LVEAVDLIKKMPFKPQP--AIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANA 375 (545)
Q Consensus 324 ~--~~~A~~~~~~m~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~ 375 (545)
. .+.+...++... .|+. ..|..+..++...|++++|+..|++++++.|+..
T Consensus 137 ~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~ 191 (208)
T 3urz_A 137 EQEKKKLETDYKKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTE 191 (208)
T ss_dssp HHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHH
T ss_pred HHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHH
Confidence 4 445666676662 3443 3455566677788999999999999999999753
No 100
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.89 E-value=1.3e-09 Score=91.88 Aligned_cols=137 Identities=14% Similarity=0.072 Sum_probs=84.5
Q ss_pred HcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHH
Q 009066 250 QHGKGEKALRLFDKMKDEGMKPD-SITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEA 328 (545)
Q Consensus 250 ~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 328 (545)
..|++++|+..+++.... .|+ ...+..+...|...|++++|.+.|++..+. -+.++..|..+..+|.+.|++++|
T Consensus 9 ~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~~~A 84 (150)
T 4ga2_A 9 SKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEENTDKA 84 (150)
T ss_dssp CHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCchHHH
Confidence 344555555555554321 222 223334455556666666666666665542 233456666666667777777777
Q ss_pred HHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHH-HHHHhcCCCCCCchhHHHHHHHHHHcCC
Q 009066 329 VDLIKKM-PFKP-QPAIFGTLLSACRVHKRLDLAEFA-AMNLFNLNPANAAGCYVQLANIYAAMKK 391 (545)
Q Consensus 329 ~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~A~~~-~~~~~~~~p~~~~~~~~~l~~~~~~~g~ 391 (545)
...|++. .+.| +...|..+...|...|+.++|... ++++++++|+++. +|.....++...|+
T Consensus 85 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~-~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 85 VECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPA-VYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHH-HHHHHHHHHHTCCC
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHH-HHHHHHHHHHHhCc
Confidence 7666665 3334 456777788888888887765554 5888888888877 77777777776664
No 101
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.86 E-value=1.6e-07 Score=84.10 Aligned_cols=172 Identities=11% Similarity=-0.047 Sum_probs=125.1
Q ss_pred HHHHHHhccC-CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC----cHHHHHHHHHHhH
Q 009066 226 ACKLFLEIQR-KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG----LVDLGIQYFDSMV 300 (545)
Q Consensus 226 A~~~f~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g----~~~~a~~~~~~~~ 300 (545)
|.+.|++..+ .++.++..+...|...+++++|+..|++..+.| +...+..|...|.. + +.++|.++|+...
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 4444544432 466677777777777788888888888877654 45555566666666 5 7888888888776
Q ss_pred HhcCCCCCHHHHHHHHHHHhH----cCCHHHHHHHHHhC-CCCCC---HhHHHHHHHHHHh----cCCHHHHHHHHHHHh
Q 009066 301 NDYGIAAKPDHYTCMVDLLGR----AGKLVEAVDLIKKM-PFKPQ---PAIFGTLLSACRV----HKRLDLAEFAAMNLF 368 (545)
Q Consensus 301 ~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m-~~~p~---~~~~~~li~~~~~----~g~~~~A~~~~~~~~ 368 (545)
+ ..++..+..|..+|.. .+++++|.+.|++. ...|+ +..+..|...|.. .+++++|+..|++..
T Consensus 81 ~----~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 81 E----AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp H----TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred H----CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 5 2356677777777776 77888888888877 33332 6778888888887 788999999999998
Q ss_pred cCCCCCCchhHHHHHHHHHHc-C-----CchHHHHHHHHhhhCCC
Q 009066 369 NLNPANAAGCYVQLANIYAAM-K-----KWDDVARIRLSMKENNV 407 (545)
Q Consensus 369 ~~~p~~~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~m~~~~~ 407 (545)
+. |.++. ++..|+.+|... | +.++|.+.+++..+.|.
T Consensus 157 ~~-~~~~~-a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 157 SL-SRTGY-AEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HT-SCTTH-HHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred Hc-CCCHH-HHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 88 55555 788888888765 3 78999999988877654
No 102
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.86 E-value=1e-07 Score=101.43 Aligned_cols=189 Identities=13% Similarity=0.016 Sum_probs=149.7
Q ss_pred hccCcHHHHHHHHHHHH--------hCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHHc
Q 009066 183 SHLSSLQLGKQVHQLVF--------KSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR---KDVVTWNAMISGYAQH 251 (545)
Q Consensus 183 ~~~~~~~~a~~~~~~~~--------~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~ 251 (545)
...|++++|.+.++.++ +.. +.+...+..+...|.+.|++++|.+.|++..+ .+...|..+...|.+.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 77899999999999998 432 45677888899999999999999999998874 4778999999999999
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHH
Q 009066 252 GKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDL 331 (545)
Q Consensus 252 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 331 (545)
|++++|+..|++..+... -+...+..+..++...|++++ .+.|++..+. .+.+...|..+..+|.+.|++++|.+.
T Consensus 481 g~~~~A~~~~~~al~l~P-~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTFP-GELAPKLALAATAELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp TCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999998632 245677888889999999999 9999998864 245678899999999999999999999
Q ss_pred HHhC-CCCCC-HhHHHHHHHHHHhcCC-----HHHHHHHHHHHhcCCCCCCc
Q 009066 332 IKKM-PFKPQ-PAIFGTLLSACRVHKR-----LDLAEFAAMNLFNLNPANAA 376 (545)
Q Consensus 332 ~~~m-~~~p~-~~~~~~li~~~~~~g~-----~~~A~~~~~~~~~~~p~~~~ 376 (545)
|++. ...|+ ...|..+..++...++ .+...++.+.+.++.++...
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~ 608 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPR 608 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTT
T ss_pred HHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHH
Confidence 9998 56676 4677777777766555 23444444445555555543
No 103
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.83 E-value=4.6e-08 Score=84.79 Aligned_cols=157 Identities=13% Similarity=0.046 Sum_probs=93.7
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 009066 209 ALTPLISMYCKCGDLEDACKLFLEIQR---KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNH 285 (545)
Q Consensus 209 ~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 285 (545)
....+...+.+.|++++|...|++..+ .+...|..+...+.+.|++++|+..|++..... |+.... .+...+
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~-~~~~~~-- 82 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYK-SLIAKL-- 82 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHH-HHHHHH--
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHH-HHHHHH--
Confidence 344455666666666666666666553 245556666666666666666666666654432 222211 111000
Q ss_pred cCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHH
Q 009066 286 AGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKP-QPAIFGTLLSACRVHKRLDLAEFA 363 (545)
Q Consensus 286 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~A~~~ 363 (545)
. +...+...+|...+++. ...| +...+..+...+...|++++|...
T Consensus 83 -------------------------------~-~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~ 130 (176)
T 2r5s_A 83 -------------------------------E-LHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALEL 130 (176)
T ss_dssp -------------------------------H-HHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred -------------------------------H-HHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHH
Confidence 0 00111111233444433 2234 467777888888888888888888
Q ss_pred HHHHhcCCCCC--CchhHHHHHHHHHHcCCchHHHHHHHHhh
Q 009066 364 AMNLFNLNPAN--AAGCYVQLANIYAAMKKWDDVARIRLSMK 403 (545)
Q Consensus 364 ~~~~~~~~p~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 403 (545)
++++++.+|+. .. .+..++.++...|+.++|...+++..
T Consensus 131 ~~~~l~~~p~~~~~~-a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 131 LWNILKVNLGAQDGE-VKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHHTTCTTTTTTH-HHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHhCcccChHH-HHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 88888888764 34 67888888888888888888887654
No 104
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.83 E-value=1.8e-06 Score=87.72 Aligned_cols=187 Identities=8% Similarity=0.020 Sum_probs=110.7
Q ss_pred cHHHHHHHHHHhCCCChHHHHHHHccCC--CCChhhHHHHHHHHHcCCCCHHHHHHHHhcCC------CCCeehHHHHHH
Q 009066 7 VNWNSVLAGFAKQRGKLKDAQELFDKIP--QPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP------IKDTASWNTMIS 78 (545)
Q Consensus 7 ~~~~~li~~~~~~g~~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~~g~~~~A~~~~~~m~------~~d~~~~~~li~ 78 (545)
.+|...+..+-. |. .+.|+.+|++.. .|++..|...+....+.+...+....+|+... ..+...|...+.
T Consensus 16 ~vyer~l~~~P~-~~-~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~ 93 (493)
T 2uy1_A 16 AIMEHARRLYMS-KD-YRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIE 93 (493)
T ss_dssp HHHHHHHHHHHT-TC-HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCC-CC-HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHH
Confidence 356666766665 66 999999999876 48888999988866665223455666776644 235567777776
Q ss_pred HHH----hCCCHHHHHHHHhhCCc-CC---HhHHHHHHHHHH-------------HcCChHHHHHHHhhCC----CCCcc
Q 009066 79 GFV----QKKNMAKARDLFLAMPE-KN---SVSWSAMISGYI-------------ECGQLDKAVELFKVAP----VKSVV 133 (545)
Q Consensus 79 ~~~----~~g~~~~a~~~~~~~~~-~~---~~~~~~li~~~~-------------~~g~~~~A~~~f~~~~----~~~~~ 133 (545)
.+. ..++.+.+..+|++.+. |. ...|......-. ..+.+..|+.+++.+. ..+..
T Consensus 94 f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~ 173 (493)
T 2uy1_A 94 EEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVK 173 (493)
T ss_dssp HTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHH
T ss_pred HHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHH
Confidence 654 24678889999988864 11 112222211110 0112233343333221 11333
Q ss_pred cHHHHHHHhcchhhhcc--C-----ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhC
Q 009066 134 AWTAMISGYMKFGYVEN--S-----WAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKS 201 (545)
Q Consensus 134 ~~~~li~~~~~~g~~~~--g-----~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 201 (545)
.|...+.-- ..+ + ..+.+..+|++++... +.+...|...+..+.+.|+++.|+.+++..++.
T Consensus 174 ~W~~y~~~E-----~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~ 242 (493)
T 2uy1_A 174 NAARLIDLE-----MENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM 242 (493)
T ss_dssp HHHHHHHHH-----HTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-----hcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 565544432 211 1 1345667888887643 445667777777777888889999999888887
No 105
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.81 E-value=7.4e-08 Score=83.44 Aligned_cols=157 Identities=11% Similarity=0.030 Sum_probs=94.5
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhccC--CChhhHHHHHHH-HHH
Q 009066 174 SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR--KDVVTWNAMISG-YAQ 250 (545)
Q Consensus 174 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~-~~~ 250 (545)
.+......+...|++++|...++.+++.. +.+...+..+..+|.+.|++++|...|++... |+...+..+... +..
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQ 86 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHh
Confidence 34556667889999999999999987764 45677888999999999999999999999875 333322222111 112
Q ss_pred cCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHH
Q 009066 251 HGKGEKALRLFDKMKDEGMKP-DSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAV 329 (545)
Q Consensus 251 ~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 329 (545)
.+...+|+..|++..+. .| +...+..+..++...|++++|...|+++.+...-..+...+..+...|...|+.++|.
T Consensus 87 ~~~~~~a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 87 QAAESPELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHTSCHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 22233455566655553 22 3444555555555666666666666555532100111334555555555555555555
Q ss_pred HHHH
Q 009066 330 DLIK 333 (545)
Q Consensus 330 ~~~~ 333 (545)
..|+
T Consensus 165 ~~y~ 168 (176)
T 2r5s_A 165 SKYR 168 (176)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
No 106
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.79 E-value=1e-07 Score=99.39 Aligned_cols=160 Identities=13% Similarity=0.063 Sum_probs=116.2
Q ss_pred cCCHHHHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHH
Q 009066 220 CGDLEDACKLFLEIQR---KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYF 296 (545)
Q Consensus 220 ~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 296 (545)
.|++++|.+.|++..+ .+...|..+...|.+.|++++|++.|++..+.. +.+...+..+..++...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 3677888888877764 356778888888888899999999998888753 224667778888888899999999999
Q ss_pred HHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhc---CCHHHHHHHHHHHhcCC
Q 009066 297 DSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKP-QPAIFGTLLSACRVH---KRLDLAEFAAMNLFNLN 371 (545)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~---g~~~~A~~~~~~~~~~~ 371 (545)
++..+. .+.+...+..+..+|.+.|++++|.+.+++. ...| +...+..+...+... |+.++|...++++++.+
T Consensus 81 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 888764 2445778888999999999999999998877 3334 567888888899999 99999999999999999
Q ss_pred CCCCchhHHHHH
Q 009066 372 PANAAGCYVQLA 383 (545)
Q Consensus 372 p~~~~~~~~~l~ 383 (545)
|+... .|..+.
T Consensus 159 p~~~~-~~~~l~ 169 (568)
T 2vsy_A 159 VGAVE-PFAFLS 169 (568)
T ss_dssp CCCSC-HHHHTT
T ss_pred CcccC-hHHHhC
Confidence 98876 666655
No 107
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.78 E-value=6.1e-08 Score=101.04 Aligned_cols=151 Identities=16% Similarity=0.080 Sum_probs=116.3
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHH
Q 009066 251 HGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVD 330 (545)
Q Consensus 251 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 330 (545)
.|++++|+..|++..+.. +-+...+..+...+...|++++|.+.+++..+. .+.+...+..+..+|...|++++|.+
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 478899999999988752 224677888889999999999999999998863 34468899999999999999999999
Q ss_pred HHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHc---CCchHHHHHHHHhhhC
Q 009066 331 LIKKM-PFKP-QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAM---KKWDDVARIRLSMKEN 405 (545)
Q Consensus 331 ~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~---g~~~~a~~~~~~m~~~ 405 (545)
.+++. ...| +...|..+...+...|++++|...++++++.+|++.. ++..++.++... |++++|.+.+++..+.
T Consensus 79 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 79 LLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPY-ITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-HHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 99987 3334 5688999999999999999999999999999999987 999999999999 9999999999887653
No 108
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.77 E-value=7.2e-09 Score=87.32 Aligned_cols=121 Identities=13% Similarity=-0.002 Sum_probs=100.2
Q ss_pred HHHHHccCcHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHhHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCC
Q 009066 280 LLACNHAGLVDLGIQYFDSMVNDYGIAAK-PDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKP-QPAIFGTLLSACRVHKR 356 (545)
Q Consensus 280 l~a~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~ 356 (545)
...+...|++++|+..++.... ..|+ +..+..+..+|.+.|++++|.+.|++. .+.| +...|..+...+...|+
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCc
Confidence 3445677899999999987764 2333 455678999999999999999999987 4445 67899999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchHHHHH-HHHhhh
Q 009066 357 LDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARI-RLSMKE 404 (545)
Q Consensus 357 ~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~-~~~m~~ 404 (545)
+++|+..|+++++++|+++. ++..++.+|.+.|++++|.+. +++..+
T Consensus 81 ~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKD-LVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHH-HHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 99999999999999999988 999999999999999887765 466654
No 109
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.76 E-value=2e-07 Score=84.25 Aligned_cols=185 Identities=14% Similarity=0.002 Sum_probs=131.6
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHHHhCCCCCC--cccHHHHHHHHHhcCCHHHHHHHHHhccC--CC-h---hhHH
Q 009066 171 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKD--TTALTPLISMYCKCGDLEDACKLFLEIQR--KD-V---VTWN 242 (545)
Q Consensus 171 d~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~~-~---~~~~ 242 (545)
+...+..+...+...|++++|...|+.+++...... ...+..+..+|.+.|++++|...|++..+ |+ . .++.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 344566667788899999999999999998642221 24677789999999999999999999864 32 2 2455
Q ss_pred HHHHHHHH------------------cCChHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHccCcHHHHHHHHHHhHHhc
Q 009066 243 AMISGYAQ------------------HGKGEKALRLFDKMKDEGMKPDSIT-FVALLLACNHAGLVDLGIQYFDSMVNDY 303 (545)
Q Consensus 243 ~li~~~~~------------------~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 303 (545)
.+..++.. .|++++|+..|+++.+. .|+... ...... . ..+...+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~----l------~~~~~~~---- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKR----L------VFLKDRL---- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHH----H------HHHHHHH----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHH----H------HHHHHHH----
Confidence 55555554 57899999999999875 454321 111110 0 0011111
Q ss_pred CCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhC-CCCCCH----hHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCc
Q 009066 304 GIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKPQP----AIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAA 376 (545)
Q Consensus 304 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 376 (545)
......+...|.+.|++++|...|+++ ...|+. ..+..+..++.+.|+.++|...++.+....|++..
T Consensus 147 -----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 147 -----AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp -----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred -----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 112245678899999999999999887 223432 56888899999999999999999999999888754
No 110
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.74 E-value=5.1e-06 Score=78.20 Aligned_cols=224 Identities=11% Similarity=0.074 Sum_probs=150.6
Q ss_pred hccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC--cHHHHHHHHHHHHhCCCCCCcccHHHHHHHH----Hhc-
Q 009066 148 VENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLS--SLQLGKQVHQLVFKSPLCKDTTALTPLISMY----CKC- 220 (545)
Q Consensus 148 ~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~--~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y----~~~- 220 (545)
......++|++++.+++..+ +-+...|+.--.++...+ +++++...+..++... +.+..+|+.-...+ .+.
T Consensus 44 ~~~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~ 121 (306)
T 3dra_A 44 KAEEYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNN 121 (306)
T ss_dssp HTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTT
T ss_pred HcCCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhcc
Confidence 33445568888888887743 224445666666666777 8888888888887764 34555565544444 444
Q ss_pred --CCHHHHHHHHHhccC---CChhhHHHHHHHHHHcCChH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCc-----
Q 009066 221 --GDLEDACKLFLEIQR---KDVVTWNAMISGYAQHGKGE--KALRLFDKMKDEGMKPDSITFVALLLACNHAGL----- 288 (545)
Q Consensus 221 --g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~----- 288 (545)
++++++.++++++.+ +|..+|+--...+.+.|.++ ++++.++++.+..+. |...|+.-.....+.+.
T Consensus 122 ~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~ 200 (306)
T 3dra_A 122 NDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDN 200 (306)
T ss_dssp TCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHH
T ss_pred ccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhh
Confidence 678888888888764 56778888777777888877 888888888876543 55666655555556555
Q ss_pred -HHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHH-HHHHHHhC-CC----CCCHhHHHHHHHHHHhcCCHHHHH
Q 009066 289 -VDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVE-AVDLIKKM-PF----KPQPAIFGTLLSACRVHKRLDLAE 361 (545)
Q Consensus 289 -~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m-~~----~p~~~~~~~li~~~~~~g~~~~A~ 361 (545)
++++.+.++.++.. .+-|...|+-+...+.+.|+..+ +..+..+. .. ..+...+..+...+.+.|+.++|.
T Consensus 201 ~~~eEl~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~ 278 (306)
T 3dra_A 201 TIDEELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESR 278 (306)
T ss_dssp HHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hHHHHHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHH
Confidence 77777777777653 35566777777777777776443 44455554 11 235567777777777777777777
Q ss_pred HHHHHHhc-CCCCCCc
Q 009066 362 FAAMNLFN-LNPANAA 376 (545)
Q Consensus 362 ~~~~~~~~-~~p~~~~ 376 (545)
++++.+.+ .+|-...
T Consensus 279 ~~~~~l~~~~Dpir~~ 294 (306)
T 3dra_A 279 TVYDLLKSKYNPIRSN 294 (306)
T ss_dssp HHHHHHHHTTCGGGHH
T ss_pred HHHHHHHhccChHHHH
Confidence 77777775 6776543
No 111
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.73 E-value=7.9e-07 Score=79.31 Aligned_cols=144 Identities=11% Similarity=0.025 Sum_probs=86.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHH
Q 009066 212 PLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDL 291 (545)
Q Consensus 212 ~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 291 (545)
.+...|...|++++|...|++...++...|..+...|...|++++|+..|++..... +.+...+..+..++...|++++
T Consensus 11 ~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~ 89 (213)
T 1hh8_A 11 NEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDL 89 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccHHH
Confidence 355566667777777777777766666677777777777777777777777766542 2244555556666666666666
Q ss_pred HHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhCCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHhcC
Q 009066 292 GIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKP-QPAIFGTLLSACRVHKRLDLAEFAAMNLFNL 370 (545)
Q Consensus 292 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 370 (545)
|...|+...+.. +.+.... +...| +...| ....|..+...+...|++++|...+++++++
T Consensus 90 A~~~~~~al~~~--~~~~~~~------~~~~~-----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 90 AIKDLKEALIQL--RGNQLID------YKILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHHHHHHHHHTT--TTCSEEE------CGGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhC--CCccHHH------HHHhc-----------cccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 666666655421 1111000 00000 01122 2256677777777788888888888888887
Q ss_pred CCCCC
Q 009066 371 NPANA 375 (545)
Q Consensus 371 ~p~~~ 375 (545)
.|++.
T Consensus 151 ~p~~~ 155 (213)
T 1hh8_A 151 KSEPR 155 (213)
T ss_dssp CCSGG
T ss_pred Ccccc
Confidence 77653
No 112
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.73 E-value=4e-07 Score=85.73 Aligned_cols=164 Identities=10% Similarity=0.020 Sum_probs=102.3
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhccC--CChhhHHH-HH
Q 009066 169 RPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR--KDVVTWNA-MI 245 (545)
Q Consensus 169 ~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~-li 245 (545)
+.+...+..+...+...|++++|...++.+++.. +.+...+..+...|.+.|++++|...|+++.. |+...... ..
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~ 192 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQ 192 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHH
Confidence 3344556666666777788888888888877764 34556677777778888888888888877764 33322222 22
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCH
Q 009066 246 SGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKL 325 (545)
Q Consensus 246 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 325 (545)
..+.+.++.++|+..|++..... +.+...+..+..++...|++++|...+..+.+...-..+...+..++..|...|+.
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 23555666667777777766642 22455566666677777777777777777665411111245666666666666666
Q ss_pred HHHHHHHHh
Q 009066 326 VEAVDLIKK 334 (545)
Q Consensus 326 ~~A~~~~~~ 334 (545)
++|...|++
T Consensus 272 ~~a~~~~r~ 280 (287)
T 3qou_A 272 DALASXYRR 280 (287)
T ss_dssp CHHHHHHHH
T ss_pred CcHHHHHHH
Confidence 666655543
No 113
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.72 E-value=1.3e-06 Score=82.22 Aligned_cols=213 Identities=15% Similarity=0.143 Sum_probs=168.4
Q ss_pred cHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcC--CHHHHHHHHHhccC---CChhhHHHHHHHH----HHc---CCh
Q 009066 187 SLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCG--DLEDACKLFLEIQR---KDVVTWNAMISGY----AQH---GKG 254 (545)
Q Consensus 187 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g--~~~~A~~~f~~~~~---~~~~~~~~li~~~----~~~---g~~ 254 (545)
..++|......++... +.+..+|+.-...+...| +++++++.++.+.. ++..+|+.--..+ ... +++
T Consensus 48 ~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 48 YSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred CCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCH
Confidence 3467888888888765 445667888888888888 99999999998874 4667788776666 555 789
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHH--HHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCC------HH
Q 009066 255 EKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVD--LGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGK------LV 326 (545)
Q Consensus 255 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~--~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~------~~ 326 (545)
++++.+++++.+...+ |...|..-.-.+.+.|.++ ++.+.++.+.+. -+.+...|+....++.+.|+ ++
T Consensus 127 ~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~~~~ 203 (306)
T 3dra_A 127 YREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDNTID 203 (306)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHHHHH
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhhhHH
Confidence 9999999999986433 6677777666777778877 999999999874 35567777777777777776 89
Q ss_pred HHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHH-HHHHHHHHhcCC---CCCCchhHHHHHHHHHHcCCchHHHHHHH
Q 009066 327 EAVDLIKKM-PFKP-QPAIFGTLLSACRVHKRLDL-AEFAAMNLFNLN---PANAAGCYVQLANIYAAMKKWDDVARIRL 400 (545)
Q Consensus 327 ~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~-A~~~~~~~~~~~---p~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 400 (545)
++++.++++ ...| |...|+.+...+.+.|+... ....++++.+++ |.++. ++..++.+|.+.|+.++|.++++
T Consensus 204 eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-al~~la~~~~~~~~~~~A~~~~~ 282 (306)
T 3dra_A 204 EELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSF-ALETLAKIYTQQKKYNESRTVYD 282 (306)
T ss_dssp HHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHH-HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHH-HHHHHHHHHHccCCHHHHHHHHH
Confidence 999998876 3334 78899999999998888554 556778887766 77766 89999999999999999999999
Q ss_pred Hhhh
Q 009066 401 SMKE 404 (545)
Q Consensus 401 ~m~~ 404 (545)
.+.+
T Consensus 283 ~l~~ 286 (306)
T 3dra_A 283 LLKS 286 (306)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9875
No 114
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.72 E-value=4.3e-08 Score=82.33 Aligned_cols=97 Identities=9% Similarity=-0.012 Sum_probs=86.2
Q ss_pred CHHHHHHHHHHHhHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHH
Q 009066 308 KPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKP-QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANI 385 (545)
Q Consensus 308 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~ 385 (545)
+...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..|+++++++|+++. +|..++.+
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~-~~~~lg~~ 113 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYT-PVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcH-HHHHHHHH
Confidence 3567778888899999999999999887 3345 6788999999999999999999999999999999998 99999999
Q ss_pred HHHcCCchHHHHHHHHhhhC
Q 009066 386 YAAMKKWDDVARIRLSMKEN 405 (545)
Q Consensus 386 ~~~~g~~~~a~~~~~~m~~~ 405 (545)
|...|++++|.+.|++..+.
T Consensus 114 ~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999998764
No 115
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.72 E-value=2.2e-07 Score=82.91 Aligned_cols=135 Identities=14% Similarity=0.017 Sum_probs=82.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 009066 211 TPLISMYCKCGDLEDACKLFLEIQR---KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAG 287 (545)
Q Consensus 211 ~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g 287 (545)
..+...|.+.|++++|...|++..+ .+...|..+...|...|++++|+..|++.++.. +-+..++..+..++...|
T Consensus 58 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 58 TELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTA 136 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHh
Confidence 3467777777888888877777653 356677777778888888888888888877743 224556666666655444
Q ss_pred c--HHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhC-CCCCCHhHHHHHHH
Q 009066 288 L--VDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKPQPAIFGTLLS 349 (545)
Q Consensus 288 ~--~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~li~ 349 (545)
. .+.+...+.... ...|....+..+...+...|++++|...|++. ...|+......+..
T Consensus 137 ~~~~~~~~~~~~~~~---~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l~~ 198 (208)
T 3urz_A 137 EQEKKKLETDYKKLS---SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLDK 198 (208)
T ss_dssp HHHHHHHHHHHC------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh---CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 3 333444444332 22222333444555666678888888888776 56677655554443
No 116
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.71 E-value=5.7e-08 Score=92.62 Aligned_cols=198 Identities=9% Similarity=0.010 Sum_probs=148.6
Q ss_pred ccCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHHcCChHHHHHHHHH
Q 009066 184 HLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDK 263 (545)
Q Consensus 184 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 263 (545)
..|++++|.+++++..+... .. .+...+++++|...|++. ...|...|++++|...|.+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~-~~---------~~~~~~~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~ 61 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLK-TS---------FMKWKPDYDSAASEYAKA-----------AVAFKNAKQLEQAKDAYLQ 61 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHC-CC---------SSSCSCCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHcc-cc---------ccCCCCCHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHH
Confidence 35788899999988876421 11 011158899999888764 5678889999999999998
Q ss_pred HHHc----CCCCC-HHHHHHHHHHHHccCcHHHHHHHHHHhHHhc---CCCC-CHHHHHHHHHHHhHcCCHHHHHHHHHh
Q 009066 264 MKDE----GMKPD-SITFVALLLACNHAGLVDLGIQYFDSMVNDY---GIAA-KPDHYTCMVDLLGRAGKLVEAVDLIKK 334 (545)
Q Consensus 264 m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~ 334 (545)
..+. +-.+. ..+|..+...|...|++++|...|++..+-+ +... ...++..+..+|.. |++++|+..|++
T Consensus 62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~ 140 (307)
T 2ifu_A 62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ 140 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 8753 11111 3477888889999999999999998876532 1111 24678889999998 999999999987
Q ss_pred C----CCCCC----HhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCc-----hhHHHHHHHHHHcCCchHHHHHHHH
Q 009066 335 M----PFKPQ----PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAA-----GCYVQLANIYAAMKKWDDVARIRLS 401 (545)
Q Consensus 335 m----~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~-----~~~~~l~~~~~~~g~~~~a~~~~~~ 401 (545)
. +...+ ..++..+...+...|++++|+..+++++++.|.... .++..++.++...|++++|...+++
T Consensus 141 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 141 AAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6 11111 357888999999999999999999999987654321 1566777888888999999999998
Q ss_pred hh
Q 009066 402 MK 403 (545)
Q Consensus 402 m~ 403 (545)
..
T Consensus 221 al 222 (307)
T 2ifu_A 221 SY 222 (307)
T ss_dssp HT
T ss_pred Hh
Confidence 86
No 117
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.69 E-value=9.7e-07 Score=83.36 Aligned_cols=159 Identities=7% Similarity=-0.006 Sum_probs=113.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcC-CCCCHH----HHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCC----HHHHHH
Q 009066 244 MISGYAQHGKGEKALRLFDKMKDEG-MKPDSI----TFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK----PDHYTC 314 (545)
Q Consensus 244 li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~ 314 (545)
.+..+...|++++|..++++..... ..|+.. .+..+...+...|++++|...++...+...-.++ ...++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 4566778888888888888877632 223321 2334556666777888888888887763221222 336888
Q ss_pred HHHHHhHcCCHHHHHHHHHhC-------CCC-CC-HhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC------CchhH
Q 009066 315 MVDLLGRAGKLVEAVDLIKKM-------PFK-PQ-PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPAN------AAGCY 379 (545)
Q Consensus 315 li~~~~~~g~~~~A~~~~~~m-------~~~-p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~ 379 (545)
+...|...|++++|...|+++ +.. +. ..++..+...|...|++++|...+++++++.+.. .. +|
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~-~~ 239 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ-LY 239 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHH-HH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHH-HH
Confidence 888888999988888888766 111 11 2477888899999999999999999987754322 33 78
Q ss_pred HHHHHHHHHcCC-chHHHHHHHHhh
Q 009066 380 VQLANIYAAMKK-WDDVARIRLSMK 403 (545)
Q Consensus 380 ~~l~~~~~~~g~-~~~a~~~~~~m~ 403 (545)
..++.+|.+.|+ +++|.+.+++..
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 899999999995 599999888764
No 118
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.68 E-value=6.7e-08 Score=81.06 Aligned_cols=97 Identities=9% Similarity=-0.004 Sum_probs=83.6
Q ss_pred CHHHHHHHHHHHhHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHH
Q 009066 308 KPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKP-QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANI 385 (545)
Q Consensus 308 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~ 385 (545)
+...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..|+++++++|+++. ++..++.+
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~-~~~~lg~~ 98 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPR-FPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTH-HHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCch-HHHHHHHH
Confidence 4566777888889999999999998877 2334 6778888999999999999999999999999999988 89999999
Q ss_pred HHHcCCchHHHHHHHHhhhC
Q 009066 386 YAAMKKWDDVARIRLSMKEN 405 (545)
Q Consensus 386 ~~~~g~~~~a~~~~~~m~~~ 405 (545)
|...|++++|.+.++...+.
T Consensus 99 ~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 99 LLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999887653
No 119
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.68 E-value=6.1e-07 Score=80.04 Aligned_cols=124 Identities=9% Similarity=-0.021 Sum_probs=96.1
Q ss_pred HHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhC-CCC-CCHhHHHHHHHHHHhc
Q 009066 277 VALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFK-PQPAIFGTLLSACRVH 354 (545)
Q Consensus 277 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~li~~~~~~ 354 (545)
..+...+...|++++|...|++.. .|+...+..+...|.+.|++++|.+.|++. ... .+...|..+...+...
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHc
Confidence 344455666777777777776542 456677777777777788888887777766 222 3567788888888889
Q ss_pred CCHHHHHHHHHHHhcCCCCCC----------------chhHHHHHHHHHHcCCchHHHHHHHHhhhCC
Q 009066 355 KRLDLAEFAAMNLFNLNPANA----------------AGCYVQLANIYAAMKKWDDVARIRLSMKENN 406 (545)
Q Consensus 355 g~~~~A~~~~~~~~~~~p~~~----------------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 406 (545)
|++++|+..++++++..|.+. . ++..++.+|...|++++|.+.++...+..
T Consensus 85 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 85 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACE-VLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHH-HHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchH-HHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 999999999999988888766 6 89999999999999999999999987654
No 120
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.66 E-value=4.6e-07 Score=85.57 Aligned_cols=165 Identities=7% Similarity=-0.032 Sum_probs=118.4
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHHccCcHHHHHHHHHHhHHhcC--CCCC--H
Q 009066 239 VTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDS-----ITFVALLLACNHAGLVDLGIQYFDSMVNDYG--IAAK--P 309 (545)
Q Consensus 239 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~--~~~~--~ 309 (545)
..+...+..+...|++++|++.+++..+.....+. ..+..+...+...|++++|...++...+... ..+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 34555677788889999999988887764322111 1233445566778899999999888764211 1111 4
Q ss_pred HHHHHHHHHHhHcCCHHHHHHHHHhC----CCCCC-----HhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC-----CC
Q 009066 310 DHYTCMVDLLGRAGKLVEAVDLIKKM----PFKPQ-----PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPA-----NA 375 (545)
Q Consensus 310 ~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-----~~ 375 (545)
.+|+.+...|...|++++|...|++. ...|+ ..++..+...|...|++++|...+++++++.++ ..
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 57888999999999999999888765 11122 257888999999999999999999998765432 11
Q ss_pred chhHHHHHHHHHHcCCchHH-HHHHHHhh
Q 009066 376 AGCYVQLANIYAAMKKWDDV-ARIRLSMK 403 (545)
Q Consensus 376 ~~~~~~l~~~~~~~g~~~~a-~~~~~~m~ 403 (545)
..+|..++.+|.+.|++++| ...+++..
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 22788999999999999999 77677654
No 121
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.65 E-value=1.2e-06 Score=78.42 Aligned_cols=158 Identities=13% Similarity=-0.040 Sum_probs=91.2
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHhccC-CChhhHHHHHHHHHHcC----ChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 009066 208 TALTPLISMYCKCGDLEDACKLFLEIQR-KDVVTWNAMISGYAQHG----KGEKALRLFDKMKDEGMKPDSITFVALLLA 282 (545)
Q Consensus 208 ~~~~~li~~y~~~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 282 (545)
..+..|..+|...+++++|.+.|++..+ .+..++..+...|.. + ++++|+..|++..+.| +...+..|...
T Consensus 19 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~Lg~~ 94 (212)
T 3rjv_A 19 RAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIVLARV 94 (212)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHH
Confidence 3444455555555555555555555443 244455555555554 4 5666666666665543 34455555555
Q ss_pred HHc----cCcHHHHHHHHHHhHHhcCCCCC---HHHHHHHHHHHhH----cCCHHHHHHHHHhC-CCCCCHhHHHHHHHH
Q 009066 283 CNH----AGLVDLGIQYFDSMVNDYGIAAK---PDHYTCMVDLLGR----AGKLVEAVDLIKKM-PFKPQPAIFGTLLSA 350 (545)
Q Consensus 283 ~~~----~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~li~~~~~----~g~~~~A~~~~~~m-~~~p~~~~~~~li~~ 350 (545)
+.. .+++++|.++|++..+. .|+ +..+..|..+|.. .+++++|...|++. ...++...+..|...
T Consensus 95 y~~g~g~~~d~~~A~~~~~~A~~~---~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~a~~~Lg~~ 171 (212)
T 3rjv_A 95 LVNRQAGATDVAHAITLLQDAARD---SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLSRTGYAEYWAGMM 171 (212)
T ss_dssp HTCGGGSSCCHHHHHHHHHHHTSS---TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTSCTTHHHHHHHHH
T ss_pred HHcCCCCccCHHHHHHHHHHHHHc---CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 554 56677777777666542 232 5666667777766 66777777777766 222445556666666
Q ss_pred HHhc-C-----CHHHHHHHHHHHhcCCC
Q 009066 351 CRVH-K-----RLDLAEFAAMNLFNLNP 372 (545)
Q Consensus 351 ~~~~-g-----~~~~A~~~~~~~~~~~p 372 (545)
|... | +.++|...|++..+.+.
T Consensus 172 y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 172 FQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 6542 2 77777777777766544
No 122
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.61 E-value=4.2e-07 Score=73.74 Aligned_cols=107 Identities=10% Similarity=0.012 Sum_probs=71.3
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHH
Q 009066 275 TFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKP-QPAIFGTLLSACR 352 (545)
Q Consensus 275 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~ 352 (545)
.+......+.+.|++++|++.|++.++. .+.+...|..+..+|.+.|++++|+..|++. .+.| +...|..+..++.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 4445556666677777777777666552 2445666667777777777777777777665 2233 4567777777777
Q ss_pred hcCCHHHHHHHHHHHhcCCCCCCchhHHHHHH
Q 009066 353 VHKRLDLAEFAAMNLFNLNPANAAGCYVQLAN 384 (545)
Q Consensus 353 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~ 384 (545)
..|++++|+..|+++++++|++.. ++..|.+
T Consensus 93 ~~~~~~~A~~~~~~al~l~P~~~~-a~~~l~~ 123 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQVDPSNEE-AREGVRN 123 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHH-HHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCcCCHH-HHHHHHH
Confidence 788888888888888888887765 5555544
No 123
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.61 E-value=1.3e-06 Score=88.85 Aligned_cols=353 Identities=8% Similarity=-0.035 Sum_probs=205.6
Q ss_pred hHHHHHHHccCCCCChhhHHHHHHHHHcCCCCHHHHHHHHhcCC--CCCeehHHHHHHHHHhCCC-HHHHHHHHhhCC--
Q 009066 23 LKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP--IKDTASWNTMISGFVQKKN-MAKARDLFLAMP-- 97 (545)
Q Consensus 23 ~~~A~~~f~~~~~~~~~~~~~li~~~~~~~g~~~~A~~~~~~m~--~~d~~~~~~li~~~~~~g~-~~~a~~~~~~~~-- 97 (545)
++.|+.+|+.+ +..+ -. |+.+.+..+|++.. .|++..|..-+....+.++ .+....+|+...
T Consensus 11 i~~aR~vyer~-----------l~~~-P~-~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~ 77 (493)
T 2uy1_A 11 LSSPSAIMEHA-----------RRLY-MS-KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQ 77 (493)
T ss_dssp -CCHHHHHHHH-----------HHHH-HT-TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHH
T ss_pred hHHHHHHHHHH-----------HHHC-CC-CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence 66677776653 2222 22 78999999999877 5788889888887766653 344566666544
Q ss_pred ----cCCHhHHHHHHHHHH----HcCChHHHHHHHhhCCCCCcccHHHHHHHhcchhh------------hccCChHHHH
Q 009066 98 ----EKNSVSWSAMISGYI----ECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGY------------VENSWAEDGL 157 (545)
Q Consensus 98 ----~~~~~~~~~li~~~~----~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~------------~~~g~~~~A~ 157 (545)
..+...|...+..+. ..|+++.++++|++...-....+..+-..|..... ...+.+..|.
T Consensus 78 vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar 157 (493)
T 2uy1_A 78 FENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSF 157 (493)
T ss_dssp STTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHH
Confidence 235677888777654 34678889999987643211112222222211000 0011222334
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhcc--C-----cHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHH
Q 009066 158 KLLRMMIGLGIRPNASSLSSVLLGCSHL--S-----SLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLF 230 (545)
Q Consensus 158 ~~~~~m~~~~~~pd~~t~~~ll~~~~~~--~-----~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f 230 (545)
.+++.+...--..+...|...+.--... + ..+.+..+|++++... +.+..+|...+..+.+.|+.+.|..+|
T Consensus 158 ~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~ 236 (493)
T 2uy1_A 158 QRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVV 236 (493)
T ss_dssp HHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4444433210001223444433332211 1 1345677888888753 455777888888888899999999999
Q ss_pred HhccC-C-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcC---------CCC---CHHHHHHHHHHHHccCcHHHHHHHH
Q 009066 231 LEIQR-K-DVVTWNAMISGYAQHGKGEKALRLFDKMKDEG---------MKP---DSITFVALLLACNHAGLVDLGIQYF 296 (545)
Q Consensus 231 ~~~~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---------~~p---~~~t~~~ll~a~~~~g~~~~a~~~~ 296 (545)
++... | +...|. .|+...+.++. ++.+.+.- ..+ ....|...+....+.+.++.|+.+|
T Consensus 237 erAi~~P~~~~l~~----~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~ 309 (493)
T 2uy1_A 237 ERGIEMSDGMFLSL----YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLF 309 (493)
T ss_dssp HHHHHHCCSSHHHH----HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHhCCCcHHHHH----HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 87653 2 222232 23332222222 23322210 011 1234555666666677899999999
Q ss_pred HHhHHhcCCCCCHHHHHHHHHHHhHcC-CHHHHHHHHHhC--CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC
Q 009066 297 DSMVNDYGIAAKPDHYTCMVDLLGRAG-KLVEAVDLIKKM--PFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPA 373 (545)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m--~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~ 373 (545)
+.. +.. ..+...|...+.+-.+.| +.+.|..+|+.. ....+...|...+.-....|+.+.|..+|+++. .
T Consensus 310 ~~A-~~~--~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~----k 382 (493)
T 2uy1_A 310 IEL-GNE--GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRLE----K 382 (493)
T ss_dssp HHH-TTS--CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC----C
T ss_pred HHh-hCC--CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH----H
Confidence 888 421 234455554444444444 699999999876 221234567777777788899999999999983 2
Q ss_pred CCchhHHHHHHHHHHcCCchHHHHHHHHhhh
Q 009066 374 NAAGCYVQLANIYAAMKKWDDVARIRLSMKE 404 (545)
Q Consensus 374 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 404 (545)
... .+...+..-...|+.+.+.++++++.+
T Consensus 383 ~~~-lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 383 TSR-MWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp BHH-HHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 233 677777777888999999988877764
No 124
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.60 E-value=5.9e-07 Score=71.96 Aligned_cols=114 Identities=18% Similarity=0.151 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhC-CC-CCCHhHHHHHHHHH
Q 009066 274 ITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PF-KPQPAIFGTLLSAC 351 (545)
Q Consensus 274 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~li~~~ 351 (545)
..+..+...+...|++++|.+.++.+.+. .+.+...+..+...|.+.|++++|..+++++ .. ..+..+|..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 44555555666666666666666666543 2334566666777777777777777777665 11 23566777888888
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcC
Q 009066 352 RVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMK 390 (545)
Q Consensus 352 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g 390 (545)
...|++++|...++++++..|++.. .+..+..++...|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g 125 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAE-AKQNLGNAKQKQG 125 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHH-HHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHH-HHHHHHHHHHhcc
Confidence 8888888888888888888888776 7777777765543
No 125
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.59 E-value=6.7e-07 Score=76.00 Aligned_cols=126 Identities=7% Similarity=-0.038 Sum_probs=90.7
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHH
Q 009066 275 TFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKP-QPAIFGTLLSACR 352 (545)
Q Consensus 275 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~ 352 (545)
.+..+...+...|++++|...++...+. .+.+...+..+...|...|++++|...+++. ...| +...|..+...+.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 3444555666667777777777666553 2335666777777777777777777777765 2223 5677888888888
Q ss_pred hcCCHHHHHHHHHHHhcCCCCCCchhHHHH--HHHHHHcCCchHHHHHHHHhh
Q 009066 353 VHKRLDLAEFAAMNLFNLNPANAAGCYVQL--ANIYAAMKKWDDVARIRLSMK 403 (545)
Q Consensus 353 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l--~~~~~~~g~~~~a~~~~~~m~ 403 (545)
..|++++|...++++++..|++.. .+..+ +..+...|++++|.+.++...
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKD-AKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 999999999999999999998876 66444 444778899999999887664
No 126
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.58 E-value=4.7e-07 Score=75.16 Aligned_cols=97 Identities=10% Similarity=-0.049 Sum_probs=82.7
Q ss_pred CHHHHHHHHHHHhHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHH
Q 009066 308 KPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKP-QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANI 385 (545)
Q Consensus 308 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~ 385 (545)
+...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..|+++++++|+++. .+..++.+
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~lg~~ 95 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPR-FPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcH-HHHHHHHH
Confidence 3456667788888899999999998877 2334 6678888999999999999999999999999999988 89999999
Q ss_pred HHHcCCchHHHHHHHHhhhC
Q 009066 386 YAAMKKWDDVARIRLSMKEN 405 (545)
Q Consensus 386 ~~~~g~~~~a~~~~~~m~~~ 405 (545)
|...|++++|.+.++...+.
T Consensus 96 ~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999887653
No 127
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.57 E-value=1.3e-07 Score=88.80 Aligned_cols=188 Identities=12% Similarity=-0.023 Sum_probs=102.7
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 009066 209 ALTPLISMYCKCGDLEDACKLFLEIQR---KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNH 285 (545)
Q Consensus 209 ~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 285 (545)
.+..+...|.+.|++++|...|++..+ .+...|..+...|.+.|++++|+..+++..+.. +.+...+..+..++..
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~ 84 (281)
T 2c2l_A 6 ELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQLE 84 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 344455556666666666666665542 245566666666666666666666666665532 1234455555666666
Q ss_pred cCcHHHHHHHHHHhHHhcCCCCCH-HHHHHHHHHHhHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHH
Q 009066 286 AGLVDLGIQYFDSMVNDYGIAAKP-DHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAA 364 (545)
Q Consensus 286 ~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 364 (545)
.|++++|...|+...+. .|+. ..+...+....+..+...... .......++......+.. + ..|+.++|...+
T Consensus 85 ~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l~~-l-~~~~~~~A~~~~ 158 (281)
T 2c2l_A 85 MESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYLTR-L-IAAERERELEEC 158 (281)
T ss_dssp TTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHHHH-H-HHHHHHHHHTTT
T ss_pred cCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHH-H-HHHHHHHHHHHH
Confidence 66666666666655442 1110 001111111111111111111 112222234444333322 2 268888899889
Q ss_pred HHHhcCCCCCCchhHHHHHHHHHHc-CCchHHHHHHHHhhh
Q 009066 365 MNLFNLNPANAAGCYVQLANIYAAM-KKWDDVARIRLSMKE 404 (545)
Q Consensus 365 ~~~~~~~p~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~ 404 (545)
+++++.+|++.. ....+...+.+. +.++++.++|....+
T Consensus 159 ~~al~~~p~~~~-~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 159 QRNHEGHEDDGH-IRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp SGGGTTTSCHHH-HTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred Hhhhccccchhh-hhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 888888887765 556666666665 678889998887765
No 128
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.57 E-value=6.8e-07 Score=72.29 Aligned_cols=117 Identities=10% Similarity=0.054 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHH
Q 009066 274 ITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKP-QPAIFGTLLSAC 351 (545)
Q Consensus 274 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~ 351 (545)
..+..+...+...|++++|...++...+. .+.+...+..+...|...|++++|.+.+++. ...| +...|..+...+
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 34555556666677777777777766653 2345666777777777777777777777665 2223 466788888888
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCch
Q 009066 352 RVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWD 393 (545)
Q Consensus 352 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~ 393 (545)
...|++++|...++++++..|++.. .+..++.++...|+++
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~~~~-~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPDNET-YKSNLKIAELKLREAP 131 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHH-HHHHHHHHHHHHTTCC
T ss_pred HHhCCHHHHHHHHHHHHhcCccchH-HHHHHHHHHHHHhcCC
Confidence 8889999999999999888888876 8888888888887653
No 129
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.56 E-value=9.1e-06 Score=76.58 Aligned_cols=157 Identities=11% Similarity=0.012 Sum_probs=117.1
Q ss_pred HHHHHHhcCCHHHHHHHHHhccCCC---------hhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-CC----HHHHHH
Q 009066 213 LISMYCKCGDLEDACKLFLEIQRKD---------VVTWNAMISGYAQHGKGEKALRLFDKMKDEGMK-PD----SITFVA 278 (545)
Q Consensus 213 li~~y~~~g~~~~A~~~f~~~~~~~---------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~~ 278 (545)
.+..+...|++++|...+++..+.. ...+..+...+...|++++|+..|++....... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 4677888999999999998876421 113334666677778999999999999874322 22 236888
Q ss_pred HHHHHHccCcHHHHHHHHHHhHHhc----CCCCC-HHHHHHHHHHHhHcCCHHHHHHHHHhC-------CCCCC-HhHHH
Q 009066 279 LLLACNHAGLVDLGIQYFDSMVNDY----GIAAK-PDHYTCMVDLLGRAGKLVEAVDLIKKM-------PFKPQ-PAIFG 345 (545)
Q Consensus 279 ll~a~~~~g~~~~a~~~~~~~~~~~----~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~-~~~~~ 345 (545)
+..+|...|++++|...|+++.+.. +..+. ..++..+...|.+.|++++|.+.+++. +..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 8889999999999999998887421 11222 347888999999999999999998866 11222 46788
Q ss_pred HHHHHHHhcCC-HHHHHHHHHHHhc
Q 009066 346 TLLSACRVHKR-LDLAEFAAMNLFN 369 (545)
Q Consensus 346 ~li~~~~~~g~-~~~A~~~~~~~~~ 369 (545)
.+...+...|+ +++|...+++++.
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 89999999994 6999999988764
No 130
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.56 E-value=4.6e-07 Score=73.48 Aligned_cols=100 Identities=12% Similarity=0.115 Sum_probs=89.1
Q ss_pred CCCC-HHHHHHHHHHHhHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHH
Q 009066 305 IAAK-PDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKP-QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQ 381 (545)
Q Consensus 305 ~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~ 381 (545)
+.|+ ...+..+...|.+.|++++|++.|++. ...| +...|..+..++...|++++|+..++++++++|++.. +|..
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~-a~~~ 86 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIK-GYIR 86 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-HHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhH-HHHH
Confidence 3444 467788899999999999999999987 3344 6789999999999999999999999999999999988 9999
Q ss_pred HHHHHHHcCCchHHHHHHHHhhhC
Q 009066 382 LANIYAAMKKWDDVARIRLSMKEN 405 (545)
Q Consensus 382 l~~~~~~~g~~~~a~~~~~~m~~~ 405 (545)
++.+|...|++++|.+.|++..+.
T Consensus 87 lg~~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 87 KAACLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHH
Confidence 999999999999999999988763
No 131
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.55 E-value=7.9e-07 Score=72.29 Aligned_cols=115 Identities=9% Similarity=0.014 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHH
Q 009066 274 ITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKP-QPAIFGTLLSAC 351 (545)
Q Consensus 274 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~ 351 (545)
..+..+...+...|++++|...++...+. .+.+...+..+...|...|++++|.+.+++. ...| +...|..+...+
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 34444455555555555555555555431 1234555556666666666666666666554 1122 456777777778
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCC
Q 009066 352 RVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKK 391 (545)
Q Consensus 352 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~ 391 (545)
...|++++|...++++++.+|.+.. .+..+..++...|+
T Consensus 95 ~~~~~~~~A~~~~~~~~~~~p~~~~-~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDLDSSCKE-AADGYQRCMMAQYN 133 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHHCGGGTH-HHHHHHHHHHHHTC
T ss_pred HHHhhHHHHHHHHHHHHHhCCCchH-HHHHHHHHHHHhcC
Confidence 8888888888888888888887766 77777777766553
No 132
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.51 E-value=3.1e-06 Score=79.86 Aligned_cols=160 Identities=10% Similarity=-0.004 Sum_probs=111.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhccC--C-Ch------hhHHHHHHHHHHcCChHHHHHHHHHHHHcCC---CCC--HHH
Q 009066 210 LTPLISMYCKCGDLEDACKLFLEIQR--K-DV------VTWNAMISGYAQHGKGEKALRLFDKMKDEGM---KPD--SIT 275 (545)
Q Consensus 210 ~~~li~~y~~~g~~~~A~~~f~~~~~--~-~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~t 275 (545)
+...+..+...|++++|.+.+++..+ + .. ..+..+...+...|++++|+..|++...... .+. ..+
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 34456677888888888888876543 1 11 2234455566777899999999988875321 112 347
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHhHH---hcCCCC--CHHHHHHHHHHHhHcCCHHHHHHHHHhC-------CCCC-CHh
Q 009066 276 FVALLLACNHAGLVDLGIQYFDSMVN---DYGIAA--KPDHYTCMVDLLGRAGKLVEAVDLIKKM-------PFKP-QPA 342 (545)
Q Consensus 276 ~~~ll~a~~~~g~~~~a~~~~~~~~~---~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p-~~~ 342 (545)
++.+...|...|++++|...+++..+ .....+ ...++..+...|.+.|++++|...+++. +... -..
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~ 237 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 77888888889999999999888763 211111 1257888888999999999999888765 1111 146
Q ss_pred HHHHHHHHHHhcCCHHHH-HHHHHHHhc
Q 009066 343 IFGTLLSACRVHKRLDLA-EFAAMNLFN 369 (545)
Q Consensus 343 ~~~~li~~~~~~g~~~~A-~~~~~~~~~ 369 (545)
+|..+...|...|++++| ...+++++.
T Consensus 238 ~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 238 LYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 788888899999999999 776777654
No 133
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.47 E-value=1.9e-06 Score=74.41 Aligned_cols=117 Identities=4% Similarity=0.062 Sum_probs=63.7
Q ss_pred cCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHH-HHhcCCH--HHH
Q 009066 286 AGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKP-QPAIFGTLLSA-CRVHKRL--DLA 360 (545)
Q Consensus 286 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~-~~~~g~~--~~A 360 (545)
.|++++|...++...+. .+.+...+..+...|...|++++|...|++. ...| +...|..+... +...|++ ++|
T Consensus 23 ~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp ----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred ccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 34455555555544432 1334455555555555555555555555554 1112 34455555555 5556665 666
Q ss_pred HHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchHHHHHHHHhhhC
Q 009066 361 EFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKEN 405 (545)
Q Consensus 361 ~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 405 (545)
...++++++.+|++.. ++..++.+|...|++++|...+++..+.
T Consensus 101 ~~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 101 RAMIDKALALDSNEIT-ALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHCTTCHH-HHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCcHH-HHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 6666666666666655 6666666666666666666666665543
No 134
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.47 E-value=1.1e-06 Score=84.65 Aligned_cols=160 Identities=15% Similarity=0.058 Sum_probs=111.2
Q ss_pred CCHHHHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHH
Q 009066 221 GDLEDACKLFLEIQR---KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFD 297 (545)
Q Consensus 221 g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 297 (545)
+++++|...|+...+ .+...|..+...|.+.|++++|+..|++.......... + ..+.+.+.-
T Consensus 127 ~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~--~-----------~~~~~~~~~- 192 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESS--F-----------SNEEAQKAQ- 192 (336)
T ss_dssp EEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCC--C-----------CSHHHHHHH-
T ss_pred eecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhcccc--C-----------ChHHHHHHH-
Confidence 334444444443332 24456777777777777777777777777764322110 0 001111100
Q ss_pred HhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC
Q 009066 298 SMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKP-QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANA 375 (545)
Q Consensus 298 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~ 375 (545)
+.....|..+..+|.+.|++++|+..+++. ...| +...|..+..+|...|++++|+..|+++++++|++.
T Consensus 193 --------~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~ 264 (336)
T 1p5q_A 193 --------ALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNK 264 (336)
T ss_dssp --------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCH
T ss_pred --------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH
Confidence 111467788888888899999998888877 3334 677899999999999999999999999999999998
Q ss_pred chhHHHHHHHHHHcCCchHH-HHHHHHhh
Q 009066 376 AGCYVQLANIYAAMKKWDDV-ARIRLSMK 403 (545)
Q Consensus 376 ~~~~~~l~~~~~~~g~~~~a-~~~~~~m~ 403 (545)
. ++..+..++...|+++++ .+.++.|.
T Consensus 265 ~-a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 265 A-AKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp H-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8 999999999999999998 44666654
No 135
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.45 E-value=7.7e-07 Score=81.97 Aligned_cols=128 Identities=13% Similarity=-0.057 Sum_probs=82.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCC--HHHHHHHHHHH
Q 009066 242 NAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK--PDHYTCMVDLL 319 (545)
Q Consensus 242 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~li~~~ 319 (545)
-.....+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+...+. . .|. ...+..+..++
T Consensus 106 LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~a~~~LG~al 181 (282)
T 4f3v_A 106 MGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGAAGVAHGVAA 181 (282)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHHHHHHHHHHH
Confidence 34556666777777777777766553 344434444445667777777777777644321 0 111 23566677777
Q ss_pred hHcCCHHHHHHHHHhC---CCCCC--HhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC
Q 009066 320 GRAGKLVEAVDLIKKM---PFKPQ--PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPA 373 (545)
Q Consensus 320 ~~~g~~~~A~~~~~~m---~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~ 373 (545)
.+.|++++|++.|++. +..|. ...+..+..++...|+.++|...|+++...+|+
T Consensus 182 ~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 182 ANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred HHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 7788888888777766 21132 235666677777888888888888888888887
No 136
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.45 E-value=8.2e-05 Score=70.78 Aligned_cols=172 Identities=9% Similarity=0.030 Sum_probs=107.6
Q ss_pred hccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhc-C-CHH
Q 009066 148 VENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLS-SLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKC-G-DLE 224 (545)
Q Consensus 148 ~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~-g-~~~ 224 (545)
...+..++|++++.+++..+ +-+...|+.--.++...+ .++++..++..+++.. +.+..+|+.-...+.+. + +++
T Consensus 65 ~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~ 142 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPV 142 (349)
T ss_dssp HTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCH
T ss_pred HhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChH
Confidence 44556678888888888753 224445666666666666 4788888888887765 44566666666666665 6 777
Q ss_pred HHHHHHHhccCC---ChhhHHHHHHHHHHcCChH--------HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCc-----
Q 009066 225 DACKLFLEIQRK---DVVTWNAMISGYAQHGKGE--------KALRLFDKMKDEGMKPDSITFVALLLACNHAGL----- 288 (545)
Q Consensus 225 ~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~----- 288 (545)
++.++++++.+. |..+|+--...+.+.|.++ ++++.++++.+..+. |...|+.....+.+.+.
T Consensus 143 ~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~ 221 (349)
T 3q7a_A 143 SEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSS 221 (349)
T ss_dssp HHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccch
Confidence 888888887753 5566666555555555555 777777777775433 55566655555555554
Q ss_pred --HHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCC
Q 009066 289 --VDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGK 324 (545)
Q Consensus 289 --~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 324 (545)
++++.+.+++.+.. .+-|...|+-+-..+.+.|+
T Consensus 222 ~~~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 222 RSLQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCC
Confidence 56666666665542 24445555555555555444
No 137
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.45 E-value=1.8e-06 Score=76.14 Aligned_cols=150 Identities=14% Similarity=0.016 Sum_probs=71.1
Q ss_pred hcCCHHHHHH---HHHhccCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHccCcHH
Q 009066 219 KCGDLEDACK---LFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDE----GMKP-DSITFVALLLACNHAGLVD 290 (545)
Q Consensus 219 ~~g~~~~A~~---~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~a~~~~g~~~ 290 (545)
..|++++|.+ .+..-+.....+++.+...|...|++++|+..+++.... +..| ...++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 3566666666 443322233455666666666666666666666665541 1111 1234444555566666666
Q ss_pred HHHHHHHHhHHh---cCCCC--CHHHHHHHHHHHhHcCCHHHHHHHHHhC----CCCCCH----hHHHHHHHHHHhcCCH
Q 009066 291 LGIQYFDSMVND---YGIAA--KPDHYTCMVDLLGRAGKLVEAVDLIKKM----PFKPQP----AIFGTLLSACRVHKRL 357 (545)
Q Consensus 291 ~a~~~~~~~~~~---~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~----~~~~~li~~~~~~g~~ 357 (545)
+|...+++..+. .+..| ....+..+...+...|++++|...+++. +..++. .++..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 666666554432 11111 1233445555555556665555555443 000111 1234444444555555
Q ss_pred HHHHHHHHHHh
Q 009066 358 DLAEFAAMNLF 368 (545)
Q Consensus 358 ~~A~~~~~~~~ 368 (545)
++|...+++.+
T Consensus 164 ~~A~~~~~~al 174 (203)
T 3gw4_A 164 LEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555544443
No 138
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.43 E-value=1.3e-06 Score=70.67 Aligned_cols=96 Identities=11% Similarity=0.045 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHhHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHH
Q 009066 309 PDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKP-QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIY 386 (545)
Q Consensus 309 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~ 386 (545)
...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++++|++.. ++..++.+|
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~lg~~~ 82 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVR-AYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHH-HHHHHHHHH
Confidence 455667777788888888888888776 2233 5678888888888889999999999999888888877 888899999
Q ss_pred HHcCCchHHHHHHHHhhhC
Q 009066 387 AAMKKWDDVARIRLSMKEN 405 (545)
Q Consensus 387 ~~~g~~~~a~~~~~~m~~~ 405 (545)
...|++++|...+++..+.
T Consensus 83 ~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 83 IAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHh
Confidence 9999999999888887653
No 139
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.41 E-value=1e-05 Score=71.24 Aligned_cols=127 Identities=17% Similarity=0.087 Sum_probs=73.6
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHhccC---------CChhhHHHHHHHHHHcCChHHHHHHHHHHHHc----CCCC--CH
Q 009066 209 ALTPLISMYCKCGDLEDACKLFLEIQR---------KDVVTWNAMISGYAQHGKGEKALRLFDKMKDE----GMKP--DS 273 (545)
Q Consensus 209 ~~~~li~~y~~~g~~~~A~~~f~~~~~---------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p--~~ 273 (545)
++..+...|...|++++|...|++..+ ....+++.+...|...|++++|+..+++.... +-.| ..
T Consensus 28 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 107 (203)
T 3gw4_A 28 ARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAAS 107 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHH
Confidence 334444444445555555554444332 12345666666777777777777777766542 1111 12
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCC----HHHHHHHHHHHhHcCCHHHHHHHHHhC
Q 009066 274 ITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK----PDHYTCMVDLLGRAGKLVEAVDLIKKM 335 (545)
Q Consensus 274 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m 335 (545)
..+..+...+...|++++|...+++..+...-..+ ...+..+...|...|++++|.+.+++.
T Consensus 108 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 173 (203)
T 3gw4_A 108 ANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRA 173 (203)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 34556666777778888887777766532111111 234567788888888888888777654
No 140
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.40 E-value=3.3e-06 Score=77.71 Aligned_cols=181 Identities=10% Similarity=-0.033 Sum_probs=134.6
Q ss_pred hcCCHHHHHHHHHhccC---CChhhHHHH-------HHHHHHcCChHHHHHHHHHHHHcCCCCCH---------------
Q 009066 219 KCGDLEDACKLFLEIQR---KDVVTWNAM-------ISGYAQHGKGEKALRLFDKMKDEGMKPDS--------------- 273 (545)
Q Consensus 219 ~~g~~~~A~~~f~~~~~---~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~--------------- 273 (545)
..++.+.|.+.|.++.. .....|+.+ ...+...++..+++..++.-.. +.|+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 46788888888887764 245678777 4556666666666666665443 22221
Q ss_pred -------HHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhCCCCCCH----h
Q 009066 274 -------ITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQP----A 342 (545)
Q Consensus 274 -------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~----~ 342 (545)
.....+..++...|++++|.++|+.+... .|+......+...+.+.|++++|+..|+.....|+. .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~---~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA---GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT---TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 12234556788899999999999888642 454436677778999999999999999977433433 3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhcCC--CC-CCchhHHHHHHHHHHcCCchHHHHHHHHhhhC
Q 009066 343 IFGTLLSACRVHKRLDLAEFAAMNLFNLN--PA-NAAGCYVQLANIYAAMKKWDDVARIRLSMKEN 405 (545)
Q Consensus 343 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~--p~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 405 (545)
.+..+..++...|++++|+..|++..... |. ... ....++.++.+.|+.++|...|+++...
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~d-a~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARA-IAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHH-HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 68888999999999999999999997533 54 333 6788999999999999999999999764
No 141
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.38 E-value=1.7e-06 Score=72.54 Aligned_cols=98 Identities=8% Similarity=-0.076 Sum_probs=58.7
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHH
Q 009066 275 TFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKP-QPAIFGTLLSACR 352 (545)
Q Consensus 275 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~ 352 (545)
.+..+...+.+.|++++|...|+...+. -+.++..|..+..+|.+.|++++|...|++. .+.| +...|..+..+|.
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Confidence 3444445555566666666666655542 2334555666666666666666666666655 2223 3456666777777
Q ss_pred hcCCHHHHHHHHHHHhcCCCCC
Q 009066 353 VHKRLDLAEFAAMNLFNLNPAN 374 (545)
Q Consensus 353 ~~g~~~~A~~~~~~~~~~~p~~ 374 (545)
..|++++|+..|++++++.|++
T Consensus 116 ~lg~~~eA~~~~~~al~l~~~~ 137 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQHSNDE 137 (151)
T ss_dssp HTTCHHHHHHHHHHHHHHCCCH
T ss_pred HcCCHHHHHHHHHHHHHhCCCH
Confidence 7777777777777777776654
No 142
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.37 E-value=3.4e-06 Score=72.71 Aligned_cols=125 Identities=11% Similarity=0.077 Sum_probs=92.6
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHH-HhHcCCH--
Q 009066 249 AQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDL-LGRAGKL-- 325 (545)
Q Consensus 249 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~-- 325 (545)
...|++++|+..+++..... +.+...+..+...+...|++++|...|+...+.. +.+...+..+..+ |...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcch
Confidence 34677778888888777653 2355677777778888888888888888877642 3456777778887 7788887
Q ss_pred HHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCc
Q 009066 326 VEAVDLIKKM-PFKP-QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAA 376 (545)
Q Consensus 326 ~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 376 (545)
++|...+++. ...| +...|..+...+...|++++|...++++++..|++..
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 150 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRIN 150 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSC
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCcc
Confidence 8888888876 2334 4677888888999999999999999999999998864
No 143
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.37 E-value=6.4e-06 Score=65.00 Aligned_cols=108 Identities=14% Similarity=0.064 Sum_probs=67.5
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHH
Q 009066 275 TFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKP-QPAIFGTLLSACR 352 (545)
Q Consensus 275 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~ 352 (545)
.+..+...+...|++++|...++...+. .+.+...+..+...|.+.|++++|...+++. ...| +...|..+...+.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 3444555555666666666666665542 2334556666666666667777776666655 2223 4566777777777
Q ss_pred hcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHH
Q 009066 353 VHKRLDLAEFAAMNLFNLNPANAAGCYVQLANI 385 (545)
Q Consensus 353 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~ 385 (545)
..|++++|...++++.+.+|++.. .+..+..+
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~-~~~~l~~~ 115 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEANNPQ-LKEGLQNM 115 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHH-HHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHcCCCCHH-HHHHHHHh
Confidence 788888888888888888777665 55544443
No 144
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.36 E-value=7.3e-06 Score=69.42 Aligned_cols=127 Identities=11% Similarity=0.010 Sum_probs=82.2
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHH
Q 009066 239 VTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDL 318 (545)
Q Consensus 239 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 318 (545)
..|..+...+...|++++|+..|++..... +.+..++..+..++...|++++|...++...+. .+.+...+..+...
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~ 90 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHH
Confidence 345666667777777777777777776642 224556666667777777777777777777653 24456677777777
Q ss_pred HhHcCCHHHHHHHHHhC-CCCC-CHhHHH--HHHHHHHhcCCHHHHHHHHHHHh
Q 009066 319 LGRAGKLVEAVDLIKKM-PFKP-QPAIFG--TLLSACRVHKRLDLAEFAAMNLF 368 (545)
Q Consensus 319 ~~~~g~~~~A~~~~~~m-~~~p-~~~~~~--~li~~~~~~g~~~~A~~~~~~~~ 368 (545)
|...|++++|...|++. ...| +...+. .++..+...|++++|...+++..
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 77778888877777766 2223 333443 33333666777777777776653
No 145
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.35 E-value=1.7e-06 Score=67.71 Aligned_cols=96 Identities=18% Similarity=0.106 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHhHcCCHHHHHHHHHhC-CCC-CCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC--CCchhHHHHHH
Q 009066 309 PDHYTCMVDLLGRAGKLVEAVDLIKKM-PFK-PQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPA--NAAGCYVQLAN 384 (545)
Q Consensus 309 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~~l~~ 384 (545)
...+..+...+.+.|++++|...|++. ... .+...|..+...+...|++++|...++++++..|+ +.. .+..++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~-~~~~l~~ 84 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKD-VWAAKAD 84 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHH-HHHHHHH
Confidence 445556666677777777777777665 122 34566777777777778888888888888777777 666 7777778
Q ss_pred HHHHc-CCchHHHHHHHHhhhC
Q 009066 385 IYAAM-KKWDDVARIRLSMKEN 405 (545)
Q Consensus 385 ~~~~~-g~~~~a~~~~~~m~~~ 405 (545)
+|... |++++|.+.++...+.
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHhCCHHHHHHHHHHHhhc
Confidence 88888 8888888877777654
No 146
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.34 E-value=3.9e-06 Score=78.66 Aligned_cols=191 Identities=9% Similarity=-0.057 Sum_probs=121.4
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHH
Q 009066 171 NASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR---KDVVTWNAMISG 247 (545)
Q Consensus 171 d~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~ 247 (545)
+...+..+...+...|++++|...+..+++.. +.+...+..+...|.+.|++++|...|++..+ .+...|..+..+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 34556666667777777777777777777653 34566777788888888888888888888765 356778888889
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHH
Q 009066 248 YAQHGKGEKALRLFDKMKDEGMKPDS-ITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLV 326 (545)
Q Consensus 248 ~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 326 (545)
|...|++++|+..|++..+.. |+. ..+...+.... ....+.... ..... ..+.+......+...+ .|+.+
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~-~~~~~~~i~~~l~~l~--~~~~~ 152 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSAL---RIAKKKRWN-SIEER-RIHQESELHSYLTRLI--AAERE 152 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHH---HHHHHHHHH-HHHHT-CCCCCCHHHHHHHHHH--HHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHH---HHHHHHHHH-HHHHH-HHhhhHHHHHHHHHHH--HHHHH
Confidence 999999999999998887642 211 01111111111 111112221 22222 4455666555554433 68899
Q ss_pred HHHHHHHhC-CCCCCHh-HHHHHHHHHHhc-CCHHHHHHHHHHHhcCC
Q 009066 327 EAVDLIKKM-PFKPQPA-IFGTLLSACRVH-KRLDLAEFAAMNLFNLN 371 (545)
Q Consensus 327 ~A~~~~~~m-~~~p~~~-~~~~li~~~~~~-g~~~~A~~~~~~~~~~~ 371 (545)
+|.+.+++. ...|+.. ....+...+... +.+++|..+|.++.+..
T Consensus 153 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~~ 200 (281)
T 2c2l_A 153 RELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEKR 200 (281)
T ss_dssp HHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCTT
T ss_pred HHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 999888776 5556543 334444444444 67888999999887643
No 147
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.34 E-value=3.6e-06 Score=68.95 Aligned_cols=99 Identities=10% Similarity=0.004 Sum_probs=79.8
Q ss_pred CCCHHHHHHHHHHHhHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHH
Q 009066 306 AAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKP-QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLA 383 (545)
Q Consensus 306 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~ 383 (545)
+.+...+..+...+...|++++|...|++. ...| +...|..+...+...|++++|...++++++++|++.. ++..++
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~l~ 84 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVK-AHFFLG 84 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-HHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHH-HHHHHH
Confidence 345677778888888888888888888766 2223 5677888888888889999999999999888888877 888899
Q ss_pred HHHHHcCCchHHHHHHHHhhhC
Q 009066 384 NIYAAMKKWDDVARIRLSMKEN 405 (545)
Q Consensus 384 ~~~~~~g~~~~a~~~~~~m~~~ 405 (545)
.+|...|++++|...+++..+.
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHH
Confidence 9999999999999888887653
No 148
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.32 E-value=3.4e-05 Score=73.41 Aligned_cols=213 Identities=12% Similarity=0.081 Sum_probs=154.0
Q ss_pred cHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcC-CHHHHHHHHHhccC---CChhhHHHHHHHHHHc-C-ChHHHHHH
Q 009066 187 SLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCG-DLEDACKLFLEIQR---KDVVTWNAMISGYAQH-G-KGEKALRL 260 (545)
Q Consensus 187 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g-~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~-g-~~~~A~~~ 260 (545)
..++|.++...++... +.+..+|+.--..+...| .+++++++++.+.. ++..+|+.-...+.+. + ++++++++
T Consensus 69 ~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~ 147 (349)
T 3q7a_A 69 KSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEY 147 (349)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHH
T ss_pred CCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 3457788888888765 445667787777777888 59999999999875 4677898888888776 7 89999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHccCcHH--------HHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCC-------H
Q 009066 261 FDKMKDEGMKPDSITFVALLLACNHAGLVD--------LGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGK-------L 325 (545)
Q Consensus 261 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~--------~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-------~ 325 (545)
++++.+...+ |...|+.-.-...+.|..+ ++.+.++++++. .+.+...|+....++.+.++ +
T Consensus 148 ~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~--dp~N~SAW~~R~~lL~~l~~~~~~~~~~ 224 (349)
T 3q7a_A 148 IHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV--DGRNNSAWGWRWYLRVSRPGAETSSRSL 224 (349)
T ss_dssp HHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHTTSTTCCCCHHHH
T ss_pred HHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccccchHHH
Confidence 9999876433 5666665444444444444 889999988874 35677888888888888876 7
Q ss_pred HHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCH--------------------HHHHHHHHHHhcCC------CCCCch
Q 009066 326 VEAVDLIKKM-PFKP-QPAIFGTLLSACRVHKRL--------------------DLAEFAAMNLFNLN------PANAAG 377 (545)
Q Consensus 326 ~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~--------------------~~A~~~~~~~~~~~------p~~~~~ 377 (545)
+++++.+++. ...| |...|+-+-..+.+.|+. .........+.... +..+.
T Consensus 225 ~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~- 303 (349)
T 3q7a_A 225 QDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPL- 303 (349)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHH-
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHH-
Confidence 8899888776 3334 778899888888877764 22233333333322 33333
Q ss_pred hHHHHHHHHHHcCCchHHHHHHHHhhh
Q 009066 378 CYVQLANIYAAMKKWDDVARIRLSMKE 404 (545)
Q Consensus 378 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 404 (545)
+...|+.+|...|+.++|.++++.+.+
T Consensus 304 al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 304 ALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 778999999999999999999999864
No 149
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.32 E-value=3.8e-06 Score=73.99 Aligned_cols=168 Identities=10% Similarity=-0.061 Sum_probs=101.6
Q ss_pred HHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHH
Q 009066 215 SMYCKCGDLEDACKLFLEIQR---KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDL 291 (545)
Q Consensus 215 ~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 291 (545)
......|++++|.+.++...+ .....|..+...+...|++++|+..|++..... |+...+... ..+.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~--------~~~~ 81 (198)
T 2fbn_A 12 SGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF--IHTEEWDDQ--------ILLD 81 (198)
T ss_dssp ----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTCTTCCCH--------HHHH
T ss_pred hhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--hcccccchh--------hHHH
Confidence 334445666666666653332 134567777777888888888888888877642 221100000 0000
Q ss_pred HHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 009066 292 GIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKP-QPAIFGTLLSACRVHKRLDLAEFAAMNLFN 369 (545)
Q Consensus 292 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 369 (545)
-. . ......+..+..+|.+.|++++|...+++. ...| +...|..+..++...|++++|+..|+++++
T Consensus 82 ~~-------~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 150 (198)
T 2fbn_A 82 KK-------K----NIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAAS 150 (198)
T ss_dssp HH-------H----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HH-------H----HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 00 0 001356677888888888888888888776 2233 567888899999999999999999999999
Q ss_pred CCCCCCchhHHHHHHHHHHcCCchHHH-HHHHHhhh
Q 009066 370 LNPANAAGCYVQLANIYAAMKKWDDVA-RIRLSMKE 404 (545)
Q Consensus 370 ~~p~~~~~~~~~l~~~~~~~g~~~~a~-~~~~~m~~ 404 (545)
++|++.. ++..+..++...|+.+++. ..++.|..
T Consensus 151 ~~p~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 151 LNPNNLD-IRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp HSTTCHH-HHHHHHHHHHHHHHHHC-----------
T ss_pred HCCCcHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999887 8889999988888777766 44555543
No 150
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.32 E-value=1.9e-06 Score=69.28 Aligned_cols=93 Identities=14% Similarity=-0.015 Sum_probs=76.7
Q ss_pred HHHHHHHHhHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHc
Q 009066 312 YTCMVDLLGRAGKLVEAVDLIKKM-PFKP-QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAM 389 (545)
Q Consensus 312 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~ 389 (545)
+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++++|++.. ++..++.+|...
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~-~~~~la~~~~~~ 98 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIA-VHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHc
Confidence 455677788888888888888877 3334 6678888888889999999999999999999998887 888999999999
Q ss_pred CCchHHHHHHHHhhhC
Q 009066 390 KKWDDVARIRLSMKEN 405 (545)
Q Consensus 390 g~~~~a~~~~~~m~~~ 405 (545)
|++++|...+++..+.
T Consensus 99 g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 99 HNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999998887653
No 151
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.31 E-value=2.8e-06 Score=72.31 Aligned_cols=95 Identities=14% Similarity=0.111 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHhHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHH
Q 009066 309 PDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKP-QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIY 386 (545)
Q Consensus 309 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~ 386 (545)
...+..+...|.+.|++++|++.|++. ...| +...|..+...|...|++++|+..++++++++|++.. +|..++.+|
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~lg~~~ 89 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSK-AWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHH
Confidence 344555555555555555555555554 2222 4455555566666666666666666666666666555 566666666
Q ss_pred HHcCCchHHHHHHHHhhh
Q 009066 387 AAMKKWDDVARIRLSMKE 404 (545)
Q Consensus 387 ~~~g~~~~a~~~~~~m~~ 404 (545)
...|++++|.+.+++..+
T Consensus 90 ~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHH
Confidence 666666666666665544
No 152
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.29 E-value=1.8e-06 Score=72.27 Aligned_cols=101 Identities=10% Similarity=-0.038 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHH
Q 009066 274 ITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKP-QPAIFGTLLSAC 351 (545)
Q Consensus 274 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~ 351 (545)
..+..+...+...|++++|...|+..... -+.+...|..+..+|...|++++|...|++. ...| +...|..+..++
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 34555666777778888888888777653 2446677777888888888888888888776 2234 557788888888
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCCc
Q 009066 352 RVHKRLDLAEFAAMNLFNLNPANAA 376 (545)
Q Consensus 352 ~~~g~~~~A~~~~~~~~~~~p~~~~ 376 (545)
...|++++|+..|++++++.|+++.
T Consensus 100 ~~~g~~~~A~~~~~~al~~~p~~~~ 124 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQELIANXPE 124 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHHHTTCGG
T ss_pred HHcCCHHHHHHHHHHHHHHCcCCCc
Confidence 8999999999999999988887764
No 153
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.29 E-value=4.6e-06 Score=67.58 Aligned_cols=99 Identities=12% Similarity=0.082 Sum_probs=89.0
Q ss_pred CCCHHHHHHHHHHHhHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHH
Q 009066 306 AAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKP-QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLA 383 (545)
Q Consensus 306 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~ 383 (545)
+.+...+..+...+.+.|++++|.+.|++. ...| +...|..+...+...|++++|+..++++++..|++.. ++..++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~-~~~~la 91 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIK-GYTRKA 91 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHH-HHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchH-HHHHHH
Confidence 445778889999999999999999999987 4445 6788999999999999999999999999999999887 999999
Q ss_pred HHHHHcCCchHHHHHHHHhhhC
Q 009066 384 NIYAAMKKWDDVARIRLSMKEN 405 (545)
Q Consensus 384 ~~~~~~g~~~~a~~~~~~m~~~ 405 (545)
.+|...|++++|.+.+++..+.
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHh
Confidence 9999999999999999988763
No 154
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.28 E-value=2.2e-05 Score=62.45 Aligned_cols=93 Identities=16% Similarity=0.284 Sum_probs=45.6
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHH
Q 009066 240 TWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLL 319 (545)
Q Consensus 240 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 319 (545)
.|..+...+...|++++|+..|+++.... +.+..++..+...+...|++++|..+++.+.+. .+.+...+..+...|
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHH
Confidence 44444455555555555555555554432 123344444445555555555555555554432 123344455555555
Q ss_pred hHcCCHHHHHHHHHhC
Q 009066 320 GRAGKLVEAVDLIKKM 335 (545)
Q Consensus 320 ~~~g~~~~A~~~~~~m 335 (545)
...|++++|...++++
T Consensus 88 ~~~~~~~~A~~~~~~~ 103 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKA 103 (125)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHH
Confidence 5555555555555544
No 155
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.28 E-value=5.7e-06 Score=65.29 Aligned_cols=97 Identities=10% Similarity=0.123 Sum_probs=86.4
Q ss_pred CHHHHHHHHHHHhHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHH
Q 009066 308 KPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKP-QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANI 385 (545)
Q Consensus 308 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~ 385 (545)
....+..+...+...|++++|...|++. ...| +...|..+...+...|++++|...++++++..|++.. .+..++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~a~~ 81 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGK-GYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH-HHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHH-HHHHHHHH
Confidence 3567788899999999999999999987 2234 6788999999999999999999999999999999887 89999999
Q ss_pred HHHcCCchHHHHHHHHhhhC
Q 009066 386 YAAMKKWDDVARIRLSMKEN 405 (545)
Q Consensus 386 ~~~~g~~~~a~~~~~~m~~~ 405 (545)
|...|++++|.+.++...+.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHhhHHHHHHHHHHHHHc
Confidence 99999999999999988764
No 156
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.27 E-value=0.00014 Score=68.76 Aligned_cols=223 Identities=12% Similarity=0.066 Sum_probs=128.0
Q ss_pred HHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhccCc----------HHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcC-
Q 009066 154 EDGLKLLRMMIGLGIRPNA-SSLSSVLLGCSHLSS----------LQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCG- 221 (545)
Q Consensus 154 ~~A~~~~~~m~~~~~~pd~-~t~~~ll~~~~~~~~----------~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g- 221 (545)
++|++++..+... .|+. ..|+.--......+. ++++..++..++... +.+..+|+.-.-.+.+.|
T Consensus 47 ~eaL~~t~~~L~~--nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~ 123 (331)
T 3dss_A 47 ESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE 123 (331)
T ss_dssp HHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHH--CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCc
Confidence 3566666666653 3433 233332222222222 456666666666653 445666666666666666
Q ss_pred -CHHHHHHHHHhccC---CChhhHHHHHHHHHHcCC-hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc----------
Q 009066 222 -DLEDACKLFLEIQR---KDVVTWNAMISGYAQHGK-GEKALRLFDKMKDEGMKPDSITFVALLLACNHA---------- 286 (545)
Q Consensus 222 -~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~---------- 286 (545)
.++++..+++++.+ +|..+|+--...+...|. ++++++.+.++.+..+. |...|+.....+...
T Consensus 124 ~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~ 202 (331)
T 3dss_A 124 PNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQG 202 (331)
T ss_dssp CCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHSCCC------
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhhhcccccccc
Confidence 37777777777764 466677777777777776 47888888888776433 555555444333332
Q ss_pred ----CcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHc-----------CCHHHHHHHHHhC-CCCCCHhHHHHHHHH
Q 009066 287 ----GLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRA-----------GKLVEAVDLIKKM-PFKPQPAIFGTLLSA 350 (545)
Q Consensus 287 ----g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m-~~~p~~~~~~~li~~ 350 (545)
+.++++.+.+...+.. .+-|...|+-+-..+.+. +.++++++.++++ ...||. .|..+..+
T Consensus 203 ~~~~~~~~eEle~~~~ai~~--~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~ 279 (331)
T 3dss_A 203 RLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN-KWCLLTII 279 (331)
T ss_dssp CCCHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHH
Confidence 4466777777776653 244556665554444444 3466777777666 344554 34322222
Q ss_pred H-----HhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHH
Q 009066 351 C-----RVHKRLDLAEFAAMNLFNLNPANAAGCYVQLAN 384 (545)
Q Consensus 351 ~-----~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~ 384 (545)
. ...|..++....+.++.+++|.... -|.-|..
T Consensus 280 ~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~-~y~d~~~ 317 (331)
T 3dss_A 280 LLMRALDPLLYEKETLQYFSTLKAVDPMRAA-YLDDLRS 317 (331)
T ss_dssp HHHHHHCTTTTHHHHHHHHHHHHHHCGGGHH-HHHHHHH
T ss_pred HHHHhhcccccHHHHHHHHHHHHHhCcchhh-HHHHHHH
Confidence 1 1345666777777777777777655 4554443
No 157
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.26 E-value=7.3e-06 Score=67.87 Aligned_cols=95 Identities=8% Similarity=0.013 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHhHcCCHHHHHHHHHhC-CCCCC----HhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHH
Q 009066 309 PDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKPQ----PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLA 383 (545)
Q Consensus 309 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~ 383 (545)
...+..+...+...|++++|.+.|++. ...|+ ...|..+...+...|++++|+..++++++..|++.. .+..++
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~a 106 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVK-ALYRRS 106 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHH-HHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHH-HHHHHH
Confidence 444455555555555555555555544 33344 344555555555555555565555555555555544 555555
Q ss_pred HHHHHcCCchHHHHHHHHhhh
Q 009066 384 NIYAAMKKWDDVARIRLSMKE 404 (545)
Q Consensus 384 ~~~~~~g~~~~a~~~~~~m~~ 404 (545)
.+|...|++++|.+.+++..+
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 555556666666555555543
No 158
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.26 E-value=7.1e-06 Score=66.18 Aligned_cols=108 Identities=9% Similarity=-0.080 Sum_probs=67.7
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHH
Q 009066 275 TFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKP-QPAIFGTLLSACR 352 (545)
Q Consensus 275 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~ 352 (545)
.+..+...+...|++++|...|+...+. .+.+...|..+..+|.+.|++++|+..+++. ...| +...|..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 3444455556666666666666665542 2334566666667777777777777766655 2233 4566777777777
Q ss_pred hcCCHHHHHHHHHHHhcCC------CCCCchhHHHHHHH
Q 009066 353 VHKRLDLAEFAAMNLFNLN------PANAAGCYVQLANI 385 (545)
Q Consensus 353 ~~g~~~~A~~~~~~~~~~~------p~~~~~~~~~l~~~ 385 (545)
..|++++|...++++++++ |++.. ....+..+
T Consensus 84 ~~~~~~~A~~~~~~al~~~p~~~~~p~~~~-~~~~l~~~ 121 (126)
T 3upv_A 84 AVKEYASALETLDAARTKDAEVNNGSSARE-IDQLYYKA 121 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHTTTTHHH-HHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhCcccCCchhHHH-HHHHHHHH
Confidence 7888888888888887777 66554 44444433
No 159
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.26 E-value=5.4e-06 Score=68.62 Aligned_cols=100 Identities=16% Similarity=-0.002 Sum_probs=71.2
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHH
Q 009066 275 TFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKP-QPAIFGTLLSACR 352 (545)
Q Consensus 275 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~ 352 (545)
.+..+...+...|++++|...|+...+. -+.+...|..+..+|.+.|++++|...|++. ...| +...|..+..++.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 3444555666777777777777776653 2445667777777777788888887777766 2223 4566777888888
Q ss_pred hcCCHHHHHHHHHHHhcCCCCCCc
Q 009066 353 VHKRLDLAEFAAMNLFNLNPANAA 376 (545)
Q Consensus 353 ~~g~~~~A~~~~~~~~~~~p~~~~ 376 (545)
..|++++|...+++++++.|+++.
T Consensus 98 ~~g~~~~A~~~~~~al~~~p~~~~ 121 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARALAAAQPA 121 (142)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTCGG
T ss_pred HcCCHHHHHHHHHHHHHhCCCCcc
Confidence 888888888888888888887764
No 160
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.26 E-value=9.5e-06 Score=68.94 Aligned_cols=108 Identities=11% Similarity=-0.050 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHH
Q 009066 273 SITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKP-QPAIFGTLLSA 350 (545)
Q Consensus 273 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~ 350 (545)
...+..+...+...|++++|...|+...+. .+.+...|..+..+|.+.|++++|+..|++. ...| +...|..+..+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 345566666777777777777777777653 2345777788888888888888888888776 3334 56788899999
Q ss_pred HHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHH
Q 009066 351 CRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLA 383 (545)
Q Consensus 351 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~ 383 (545)
+...|++++|...|+++++++|++.. .+....
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~~~ 120 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAEGNGGS-DAMKRG 120 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHSSSCC-HHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCCCchH-HHHHHH
Confidence 99999999999999999999999876 554443
No 161
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.24 E-value=3.4e-06 Score=68.37 Aligned_cols=96 Identities=6% Similarity=-0.034 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHhHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCc------hhHH
Q 009066 309 PDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKP-QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAA------GCYV 380 (545)
Q Consensus 309 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~------~~~~ 380 (545)
...+..|...|.+.|++++|++.|++. .+.| +...|..+..+|...|++++|+..++++++++|+... .+|.
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 345667888888899999999988876 3344 5678888999999999999999999999988876542 1567
Q ss_pred HHHHHHHHcCCchHHHHHHHHhhh
Q 009066 381 QLANIYAAMKKWDDVARIRLSMKE 404 (545)
Q Consensus 381 ~l~~~~~~~g~~~~a~~~~~~m~~ 404 (545)
.++.+|...|++++|.+.|++..+
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Confidence 788889999999999999988754
No 162
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.23 E-value=1.1e-05 Score=77.75 Aligned_cols=120 Identities=11% Similarity=0.013 Sum_probs=71.1
Q ss_pred CcccHHHHHHHHHhcCCHHHHHHHHHhccC--CC----------------hhhHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 009066 206 DTTALTPLISMYCKCGDLEDACKLFLEIQR--KD----------------VVTWNAMISGYAQHGKGEKALRLFDKMKDE 267 (545)
Q Consensus 206 ~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~~----------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 267 (545)
+...+..+...|.+.|++++|...|++..+ |+ ...|..+..+|.+.|++++|+..|++.++.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 456788899999999999999999998763 32 245666666666666666666666666554
Q ss_pred CCCCCHHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHH
Q 009066 268 GMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEA 328 (545)
Q Consensus 268 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 328 (545)
. +.+...+..+..++...|++++|...|++..+. .+.+...+..+..++.+.|+.++|
T Consensus 226 ~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 226 D-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 2 123444555555555555555555555555432 122334444444444444444444
No 163
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.22 E-value=1.7e-05 Score=65.62 Aligned_cols=108 Identities=14% Similarity=-0.026 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCC----HHHHHHHHHHHhHcCCHHHHHHHHHhC-CCCC-CHhHHHHH
Q 009066 274 ITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK----PDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKP-QPAIFGTL 347 (545)
Q Consensus 274 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l 347 (545)
..+..+...+...|++++|...|+...+ ..|+ ...+..+...|...|++++|...+++. ...| +...|..+
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 105 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR 105 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence 3344444444455555555555554442 1233 345555566666666666666666554 2223 45666777
Q ss_pred HHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHH
Q 009066 348 LSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANI 385 (545)
Q Consensus 348 i~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~ 385 (545)
...+...|++++|...++++++++|++.. .+..+..+
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~l~~~ 142 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSLEPKNKV-FQEALRNI 142 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSCHH-HHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcHH-HHHHHHHH
Confidence 77777778888888888888777777654 44444443
No 164
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.22 E-value=1.1e-05 Score=81.59 Aligned_cols=85 Identities=14% Similarity=0.135 Sum_probs=42.6
Q ss_pred HHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHH
Q 009066 216 MYCKCGDLEDACKLFLEIQR---KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLG 292 (545)
Q Consensus 216 ~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 292 (545)
.|.+.|++++|.+.|++..+ .+..+|..+..+|.+.|++++|+..+++..+.. +.+..++..+..++...|++++|
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 34445555555555554432 234455555555555555555555555555432 11334444444555555555555
Q ss_pred HHHHHHhHH
Q 009066 293 IQYFDSMVN 301 (545)
Q Consensus 293 ~~~~~~~~~ 301 (545)
.+.+++..+
T Consensus 94 ~~~~~~al~ 102 (477)
T 1wao_1 94 LRDYETVVK 102 (477)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555444
No 165
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.21 E-value=2.4e-05 Score=62.89 Aligned_cols=115 Identities=18% Similarity=0.094 Sum_probs=61.4
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHH
Q 009066 239 VTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDL 318 (545)
Q Consensus 239 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 318 (545)
..|..+...+...|++++|+..|++..... +.+...+..+...+...|++++|...++...+. .+.+...+..+...
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICI--DPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc--CccCHHHHHHHHHH
Confidence 345555555555666666666666655432 223445555555555666666666666655542 13335555566666
Q ss_pred HhHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCC
Q 009066 319 LGRAGKLVEAVDLIKKM-PFKP-QPAIFGTLLSACRVHKR 356 (545)
Q Consensus 319 ~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~ 356 (545)
|.+.|++++|...|++. ...| +...+..+...+...|+
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 66666666666666554 2222 34455555555554443
No 166
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.18 E-value=1.2e-05 Score=65.71 Aligned_cols=100 Identities=7% Similarity=-0.124 Sum_probs=65.1
Q ss_pred CHHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHH
Q 009066 272 DSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKP-QPAIFGTLLS 349 (545)
Q Consensus 272 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~ 349 (545)
+...+..+...+...|++++|...|+...+. .+.+...+..+..+|...|++++|...+++. ...| +...|..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 4455555566666666666666666665543 2334566666677777777777777766655 2223 4567777777
Q ss_pred HHHhcCCHHHHHHHHHHHhcCCCC
Q 009066 350 ACRVHKRLDLAEFAAMNLFNLNPA 373 (545)
Q Consensus 350 ~~~~~g~~~~A~~~~~~~~~~~p~ 373 (545)
.+...|++++|+..+++++++.|+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHChh
Confidence 777788888888888877777666
No 167
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.16 E-value=9.7e-06 Score=63.27 Aligned_cols=98 Identities=14% Similarity=0.031 Sum_probs=58.7
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhC-CCCC---CHhHHHHHHHHH
Q 009066 276 FVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKP---QPAIFGTLLSAC 351 (545)
Q Consensus 276 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p---~~~~~~~li~~~ 351 (545)
+..+...+...|++++|...+++..+. .+.+...+..+...|...|++++|...+++. ...| +...|..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~ 86 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADAL 86 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHH
Confidence 334444455555555555555555442 1334455556666666666666666666655 2223 356677777777
Q ss_pred Hhc-CCHHHHHHHHHHHhcCCCCCC
Q 009066 352 RVH-KRLDLAEFAAMNLFNLNPANA 375 (545)
Q Consensus 352 ~~~-g~~~~A~~~~~~~~~~~p~~~ 375 (545)
... |++++|...++++.+..|.++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 87 RYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp TTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHhCCHHHHHHHHHHHhhcccCCC
Confidence 777 777777777777777777653
No 168
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.16 E-value=2.4e-05 Score=78.79 Aligned_cols=144 Identities=13% Similarity=0.037 Sum_probs=99.2
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHH
Q 009066 238 VVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVD 317 (545)
Q Consensus 238 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 317 (545)
...|..+...|.+.|++++|+..|++.++.. |+...+ . -+...+ .. +.....|..+..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~----------~-~~~~~~----~~-----~~~~~~~~nla~ 325 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL--EMEYGL----------S-EKESKA----SE-----SFLLAAFLNLAM 325 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTCCSC----------C-HHHHHH----HH-----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccC----------C-hHHHHH----HH-----HHHHHHHHHHHH
Confidence 4456666777777777777777777766531 111000 0 000000 00 112467888889
Q ss_pred HHhHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchHH
Q 009066 318 LLGRAGKLVEAVDLIKKM-PFKP-QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDV 395 (545)
Q Consensus 318 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a 395 (545)
+|.+.|++++|+..+++. ...| +...|..+..+|...|++++|+..|+++++++|++.. ++..+..++.+.|+++++
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~-a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKA-ARLQISMCQKKAKEHNER 404 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----C-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHHHHHHHH
Confidence 999999999999998877 3334 6788999999999999999999999999999999988 999999999999999887
Q ss_pred HH-HHHHhhh
Q 009066 396 AR-IRLSMKE 404 (545)
Q Consensus 396 ~~-~~~~m~~ 404 (545)
.+ .++.|..
T Consensus 405 ~~~~~~~~f~ 414 (457)
T 1kt0_A 405 DRRIYANMFK 414 (457)
T ss_dssp HHHHHHHC--
T ss_pred HHHHHHHHHh
Confidence 64 4555543
No 169
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.14 E-value=4.8e-06 Score=73.38 Aligned_cols=145 Identities=10% Similarity=0.011 Sum_probs=82.9
Q ss_pred HHhccCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhccC---CCh----------------hhH
Q 009066 181 GCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR---KDV----------------VTW 241 (545)
Q Consensus 181 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~----------------~~~ 241 (545)
.....+.++.+.+.+....... ......+..+...|.+.|++++|...|++..+ .+. ..|
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (198)
T 2fbn_A 13 GRENLYFQGAKKSIYDYTDEEK-VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCN 91 (198)
T ss_dssp ---------CCCSGGGCCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHH
T ss_pred hhhhhhhccccCchhhCCHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHH
Confidence 3445566666666554322211 11234566788899999999999999998764 232 566
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhH
Q 009066 242 NAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGR 321 (545)
Q Consensus 242 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 321 (545)
..+..+|.+.|++++|+..+++..... +.+...+..+..++...|++++|...|+...+. .+.+...+..+..++..
T Consensus 92 ~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 92 LNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL--NPNNLDIRNSYELCVNK 168 (198)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHH
Confidence 666667777777777777777766642 224455556666666666677766666666542 12344555555555555
Q ss_pred cCCHHHHH
Q 009066 322 AGKLVEAV 329 (545)
Q Consensus 322 ~g~~~~A~ 329 (545)
.++.+++.
T Consensus 169 ~~~~~~~~ 176 (198)
T 2fbn_A 169 LKEARKKD 176 (198)
T ss_dssp HHHHHC--
T ss_pred HHHHHHHH
Confidence 55555444
No 170
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.13 E-value=0.00044 Score=65.44 Aligned_cols=216 Identities=11% Similarity=0.081 Sum_probs=154.4
Q ss_pred ccCcH-HHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCC----------HHHHHHHHHhccC---CChhhHHHHHHHHH
Q 009066 184 HLSSL-QLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGD----------LEDACKLFLEIQR---KDVVTWNAMISGYA 249 (545)
Q Consensus 184 ~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~----------~~~A~~~f~~~~~---~~~~~~~~li~~~~ 249 (545)
+.|.+ ++|..+...++... |.+..+|+.--..+...|. ++++..+++.+.. ++..+|+.-...+.
T Consensus 41 ~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~ 119 (331)
T 3dss_A 41 QAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS 119 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Confidence 34443 57888889888775 3444556544444433333 6788888888764 57788998888888
Q ss_pred HcCC--hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCc-HHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHc----
Q 009066 250 QHGK--GEKALRLFDKMKDEGMKPDSITFVALLLACNHAGL-VDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRA---- 322 (545)
Q Consensus 250 ~~g~--~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~---- 322 (545)
..|. +++++.+++++.+...+ |...|+.-...+...|. .+++.+.+..+++. .+.+...|+....++.+.
T Consensus 120 ~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~--~p~N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 120 RLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--NFSNYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHHSCCC
T ss_pred ccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhhhcc
Confidence 8884 89999999999987543 66677766666677777 68999999999874 356677777776666655
Q ss_pred ----------CCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhc-----------CCHHHHHHHHHHHhcCCCCCCchhH
Q 009066 323 ----------GKLVEAVDLIKKM-PFKP-QPAIFGTLLSACRVH-----------KRLDLAEFAAMNLFNLNPANAAGCY 379 (545)
Q Consensus 323 ----------g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~-----------g~~~~A~~~~~~~~~~~p~~~~~~~ 379 (545)
+.++++++.+.+. ...| |...|+-+-..+... +.++++++.++++++++|++.- ++
T Consensus 197 ~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w-~l 275 (331)
T 3dss_A 197 DSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKW-CL 275 (331)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHH-HH
T ss_pred ccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccch-HH
Confidence 4588899988877 2334 778888776666655 4578999999999999999854 44
Q ss_pred HHHHHHH---HHcCCchHHHHHHHHhhh
Q 009066 380 VQLANIY---AAMKKWDDVARIRLSMKE 404 (545)
Q Consensus 380 ~~l~~~~---~~~g~~~~a~~~~~~m~~ 404 (545)
..++... ...|..++....+.++.+
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 276 LTIILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp HHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 4443322 235667778888888765
No 171
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.13 E-value=7.7e-06 Score=68.03 Aligned_cols=92 Identities=13% Similarity=0.005 Sum_probs=70.2
Q ss_pred HHHHHHHHhHcCCHHHHHHHHHhC-CCCCC-------------HhHHHHHHHHHHhcCCHHHHHHHHHHHhcC-------
Q 009066 312 YTCMVDLLGRAGKLVEAVDLIKKM-PFKPQ-------------PAIFGTLLSACRVHKRLDLAEFAAMNLFNL------- 370 (545)
Q Consensus 312 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-------------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------- 370 (545)
+......+.+.|++++|+..|++. .+.|+ ...|..+..++...|++++|+..+++++++
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 344555556666666666666655 11222 237888888888899999999888888888
Q ss_pred CCCCCchhH----HHHHHHHHHcCCchHHHHHHHHhhh
Q 009066 371 NPANAAGCY----VQLANIYAAMKKWDDVARIRLSMKE 404 (545)
Q Consensus 371 ~p~~~~~~~----~~l~~~~~~~g~~~~a~~~~~~m~~ 404 (545)
+|++.. +| ...+.++...|++++|...|++..+
T Consensus 94 ~pd~~~-A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 94 NQDEGK-LWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp TSTHHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCchHH-HHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 998877 88 9999999999999999999998865
No 172
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.11 E-value=1.2e-05 Score=64.54 Aligned_cols=96 Identities=9% Similarity=0.021 Sum_probs=61.8
Q ss_pred HHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcC
Q 009066 278 ALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKP-QPAIFGTLLSACRVHK 355 (545)
Q Consensus 278 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g 355 (545)
.+...+...|++++|...++...+. .+.+...|..+..++.+.|++++|+..|++. ...| +...|..+..++...|
T Consensus 22 ~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 22 EEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 3444556667777777777766653 2345666677777777777777777777665 3334 4567777777888888
Q ss_pred CHHHHHHHHHHHhcCCCCCC
Q 009066 356 RLDLAEFAAMNLFNLNPANA 375 (545)
Q Consensus 356 ~~~~A~~~~~~~~~~~p~~~ 375 (545)
++++|+..++++++.+|++.
T Consensus 100 ~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 100 NANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHC------
T ss_pred CHHHHHHHHHHHHHhCcCCC
Confidence 88888888888888887653
No 173
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.11 E-value=2.2e-05 Score=78.26 Aligned_cols=163 Identities=9% Similarity=-0.061 Sum_probs=84.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHc-CCCCCHH----HHHHHHHHHHccCcHHHHHHHHHHhHHh---cCCCC-CHHH
Q 009066 241 WNAMISGYAQHGKGEKALRLFDKMKDE-GMKPDSI----TFVALLLACNHAGLVDLGIQYFDSMVND---YGIAA-KPDH 311 (545)
Q Consensus 241 ~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~~~~~---~~~~~-~~~~ 311 (545)
+..+...|...|++++|.+++.++... +..++.. ..+.+-..+...|+.+++..++...... .+..+ -..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 445555666666666666666555431 1111111 1111222233456666666665554321 11111 2445
Q ss_pred HHHHHHHHhHcCCHHHHHHHHHhC-----C--CCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHhcCC---CCCC---ch
Q 009066 312 YTCMVDLLGRAGKLVEAVDLIKKM-----P--FKPQ-PAIFGTLLSACRVHKRLDLAEFAAMNLFNLN---PANA---AG 377 (545)
Q Consensus 312 ~~~li~~~~~~g~~~~A~~~~~~m-----~--~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---p~~~---~~ 377 (545)
+..|...|...|++++|..++++. + -+|. ..++..++..|...|++++|...++++.... +++. ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 566667777777777777666654 1 1121 2456666666777777777777776665432 1111 11
Q ss_pred hHHHHHHHHHHcCCchHHHHHHHHhh
Q 009066 378 CYVQLANIYAAMKKWDDVARIRLSMK 403 (545)
Q Consensus 378 ~~~~l~~~~~~~g~~~~a~~~~~~m~ 403 (545)
.+..++..+...|++++|.+.+....
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 44555666666677777766665553
No 174
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.10 E-value=1.1e-05 Score=65.04 Aligned_cols=89 Identities=16% Similarity=0.095 Sum_probs=54.0
Q ss_pred HHHHHhHcCCHHHHHHHHHhC-CCCCCH----hHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC---CchhHHHHHHHH
Q 009066 315 MVDLLGRAGKLVEAVDLIKKM-PFKPQP----AIFGTLLSACRVHKRLDLAEFAAMNLFNLNPAN---AAGCYVQLANIY 386 (545)
Q Consensus 315 li~~~~~~g~~~~A~~~~~~m-~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~~l~~~~ 386 (545)
+...+.+.|++++|.+.|++. ...|+. ..+..+...+...|++++|...++++++..|++ .. ++..++.+|
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~-~~~~la~~~ 86 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAG-GLLKLGLSQ 86 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHH-HHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHH-HHHHHHHHH
Confidence 444555666666666666554 112222 355556666666677777777777766666665 33 566666677
Q ss_pred HHcCCchHHHHHHHHhhh
Q 009066 387 AAMKKWDDVARIRLSMKE 404 (545)
Q Consensus 387 ~~~g~~~~a~~~~~~m~~ 404 (545)
...|++++|...++...+
T Consensus 87 ~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 777777777777666654
No 175
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.10 E-value=1.9e-05 Score=66.83 Aligned_cols=64 Identities=14% Similarity=0.076 Sum_probs=53.5
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchHHHHHHHHhhhC
Q 009066 341 PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKEN 405 (545)
Q Consensus 341 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 405 (545)
...|..+..+|...|++++|+..++++++++|++.. +|..++.+|...|++++|...+++..+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~-a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEK-ALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHH-HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchH-HHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 356777888888888888888888888888888877 8888888888888888888888877653
No 176
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.10 E-value=7.8e-06 Score=82.78 Aligned_cols=115 Identities=7% Similarity=-0.037 Sum_probs=70.0
Q ss_pred HHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHH
Q 009066 283 CNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKP-QPAIFGTLLSACRVHKRLDLA 360 (545)
Q Consensus 283 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~A 360 (545)
+...|++++|.+.+++..+. .+.+...|..+..+|.+.|++++|++.+++. ...| +...|..+..+|...|++++|
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 34556666666666665543 1334566666666666666666666666655 2233 445666777777777777777
Q ss_pred HHHHHHHhcCCCCCCchhHHHHHHH--HHHcCCchHHHHHHH
Q 009066 361 EFAAMNLFNLNPANAAGCYVQLANI--YAAMKKWDDVARIRL 400 (545)
Q Consensus 361 ~~~~~~~~~~~p~~~~~~~~~l~~~--~~~~g~~~~a~~~~~ 400 (545)
+..++++++++|++.. ++..+..+ +.+.|++++|.+.++
T Consensus 94 ~~~~~~al~~~p~~~~-~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 94 LRDYETVVKVKPHDKD-AKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHSTTCTT-HHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHhCCCCHH-HHHHHHHHHHHHHHHHHHHHhcccc
Confidence 7777777777777665 66666666 666677777777666
No 177
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.09 E-value=1.1e-05 Score=65.28 Aligned_cols=31 Identities=13% Similarity=-0.077 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC
Q 009066 343 IFGTLLSACRVHKRLDLAEFAAMNLFNLNPA 373 (545)
Q Consensus 343 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~ 373 (545)
+|..+...+...|++++|+..|++.++..|+
T Consensus 85 ~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 85 AMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 4555556666667777777777766666554
No 178
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.09 E-value=3.1e-05 Score=62.21 Aligned_cols=106 Identities=8% Similarity=-0.035 Sum_probs=54.6
Q ss_pred HHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhC----C-CCCC----HhHHHHH
Q 009066 277 VALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM----P-FKPQ----PAIFGTL 347 (545)
Q Consensus 277 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~-~~p~----~~~~~~l 347 (545)
..+...+...|++++|...++...+. .+.+...+..+...|...|++++|...+++. + ..++ ..+|..+
T Consensus 8 ~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 8 KELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 33334444444555555554444432 1233444455555555555555555555444 1 0112 4456666
Q ss_pred HHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHH
Q 009066 348 LSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIY 386 (545)
Q Consensus 348 i~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~ 386 (545)
...+...|++++|...++++++..|+ .. ....+..+.
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~~~~~-~~-~~~~l~~~~ 122 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLAEHRT-PD-VLKKCQQAE 122 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCC-HH-HHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCC-HH-HHHHHHHHH
Confidence 66677777777777777777776663 22 444444443
No 179
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.06 E-value=9.6e-06 Score=65.34 Aligned_cols=96 Identities=9% Similarity=0.040 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHhHcCCHHHHHHHHHhC-CCC-CCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC-------CchhH
Q 009066 309 PDHYTCMVDLLGRAGKLVEAVDLIKKM-PFK-PQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPAN-------AAGCY 379 (545)
Q Consensus 309 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~-------~~~~~ 379 (545)
...+..+...+...|++++|...|++. ... .+...+..+...+...|++++|...++++++..|++ .. ++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~-~~ 82 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAK-AY 82 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHH-HH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHH-HH
Confidence 456788899999999999999999887 222 467788999999999999999999999999988765 55 88
Q ss_pred HHHHHHHHHcCCchHHHHHHHHhhhC
Q 009066 380 VQLANIYAAMKKWDDVARIRLSMKEN 405 (545)
Q Consensus 380 ~~l~~~~~~~g~~~~a~~~~~~m~~~ 405 (545)
..++.+|...|++++|.+.++...+.
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 99999999999999999999988763
No 180
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.03 E-value=5.2e-05 Score=61.03 Aligned_cols=94 Identities=13% Similarity=0.023 Sum_probs=57.2
Q ss_pred HHHHccCcHHHHHHHHHHhHHhcCCCCCH---HHHHHHHHHHhHcCCHHHHHHHHHhC-CCCCC----HhHHHHHHHHHH
Q 009066 281 LACNHAGLVDLGIQYFDSMVNDYGIAAKP---DHYTCMVDLLGRAGKLVEAVDLIKKM-PFKPQ----PAIFGTLLSACR 352 (545)
Q Consensus 281 ~a~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~li~~~~ 352 (545)
..+...|++++|...|+.+.+.. +.+. ..+..+..+|.+.|++++|...|++. ...|+ ...+..+...+.
T Consensus 10 ~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 10 FDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 34445566666666666555431 1222 35555666666666666666666655 11232 345666777777
Q ss_pred hcCCHHHHHHHHHHHhcCCCCCCc
Q 009066 353 VHKRLDLAEFAAMNLFNLNPANAA 376 (545)
Q Consensus 353 ~~g~~~~A~~~~~~~~~~~p~~~~ 376 (545)
..|++++|...++++++..|++..
T Consensus 88 ~~g~~~~A~~~~~~~~~~~p~~~~ 111 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVATQYPGSDA 111 (129)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTSHH
T ss_pred HcCCHHHHHHHHHHHHHHCCCChH
Confidence 788888888888888877777653
No 181
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.02 E-value=0.00011 Score=73.19 Aligned_cols=159 Identities=8% Similarity=-0.054 Sum_probs=79.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhccC-----CCh----hhHHHHHHHHHHcCChHHHHHHHHHHHH----cCCCCC-HHHH
Q 009066 211 TPLISMYCKCGDLEDACKLFLEIQR-----KDV----VTWNAMISGYAQHGKGEKALRLFDKMKD----EGMKPD-SITF 276 (545)
Q Consensus 211 ~~li~~y~~~g~~~~A~~~f~~~~~-----~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~-~~t~ 276 (545)
..|+..|.+.|++++|.+.+..+.+ ++. ...+.+-..+...|++++|+.++++... .+..+. ..++
T Consensus 59 ~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 138 (434)
T 4b4t_Q 59 LELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLS 138 (434)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHH
Confidence 3455566666666666665555432 010 1122222223334566666666655443 122222 2344
Q ss_pred HHHHHHHHccCcHHHHHHHHHHhHHhcCCCC----CHHHHHHHHHHHhHcCCHHHHHHHHHhC-------CCCCC--HhH
Q 009066 277 VALLLACNHAGLVDLGIQYFDSMVNDYGIAA----KPDHYTCMVDLLGRAGKLVEAVDLIKKM-------PFKPQ--PAI 343 (545)
Q Consensus 277 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~--~~~ 343 (545)
..+...+...|++++|..+++.+.....-.. ....+..++.+|...|++++|..++++. +..|. ...
T Consensus 139 ~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 218 (434)
T 4b4t_Q 139 IKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAEL 218 (434)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHH
Confidence 4555666666666666666665543211111 1345666666666666666666666544 11111 133
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhc
Q 009066 344 FGTLLSACRVHKRLDLAEFAAMNLFN 369 (545)
Q Consensus 344 ~~~li~~~~~~g~~~~A~~~~~~~~~ 369 (545)
+..+...+...|++++|...|.+.++
T Consensus 219 ~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 219 DLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 44444555566666666666655543
No 182
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.01 E-value=3.3e-05 Score=64.68 Aligned_cols=61 Identities=13% Similarity=0.097 Sum_probs=38.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhcCCC------CCCchhHHHHHHHHHHcCCchHHHHHHHHhhh
Q 009066 343 IFGTLLSACRVHKRLDLAEFAAMNLFNLNP------ANAAGCYVQLANIYAAMKKWDDVARIRLSMKE 404 (545)
Q Consensus 343 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~p------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 404 (545)
.+..+...+...|++++|...+++.++..+ .... ++..++.+|...|++++|.+.+++..+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR-ACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH-HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 455555566666666666666666654321 1122 567778888888888888888776543
No 183
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.01 E-value=3.7e-05 Score=74.98 Aligned_cols=137 Identities=12% Similarity=0.019 Sum_probs=101.2
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHH
Q 009066 239 VTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDL 318 (545)
Q Consensus 239 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 318 (545)
..|..+...+.+.|++++|+..|++.++. .|+.. .....+ ...+ ..+.+...|..+..+
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~~~-------~~~~--~~~~~~~~~~nla~~ 282 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAEDA-------DGAK--LQPVALSCVLNIGAC 282 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSCHH-------HHGG--GHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccChH-------HHHH--HHHHHHHHHHHHHHH
Confidence 45777777788888888888888877652 01000 000111 1111 112346778889999
Q ss_pred HhHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchHHH
Q 009066 319 LGRAGKLVEAVDLIKKM-PFKP-QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVA 396 (545)
Q Consensus 319 ~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~ 396 (545)
|.+.|++++|++.+++. ...| +...|..+..+|...|++++|+..++++++++|++.. .+..+..++...++.+++.
T Consensus 283 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~-~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 283 KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKA-IQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-HHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHHHHHHHHH
Confidence 99999999999999887 4455 5678899999999999999999999999999999887 8888999998888877765
Q ss_pred H
Q 009066 397 R 397 (545)
Q Consensus 397 ~ 397 (545)
+
T Consensus 362 k 362 (370)
T 1ihg_A 362 K 362 (370)
T ss_dssp H
T ss_pred H
Confidence 4
No 184
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.00 E-value=3e-05 Score=64.95 Aligned_cols=95 Identities=13% Similarity=0.008 Sum_probs=47.3
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHhHHhcCCCC----CHHHHHHHHHHHhHcCCHHHHHHHHHhC-------CCCC-CHhH
Q 009066 276 FVALLLACNHAGLVDLGIQYFDSMVNDYGIAA----KPDHYTCMVDLLGRAGKLVEAVDLIKKM-------PFKP-QPAI 343 (545)
Q Consensus 276 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p-~~~~ 343 (545)
+..+...+...|++++|...++...+...-.+ ....+..+...+...|++++|.+.+++. +..+ ....
T Consensus 52 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 131 (164)
T 3ro3_A 52 YSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRA 131 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHH
Confidence 33344444445555555554444332110001 1234445555556666666666555543 1001 1234
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhcC
Q 009066 344 FGTLLSACRVHKRLDLAEFAAMNLFNL 370 (545)
Q Consensus 344 ~~~li~~~~~~g~~~~A~~~~~~~~~~ 370 (545)
+..+...+...|++++|...+++.+++
T Consensus 132 ~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 132 CWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 556666677777777777777766543
No 185
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.99 E-value=1.7e-05 Score=76.33 Aligned_cols=147 Identities=10% Similarity=-0.028 Sum_probs=81.1
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHH
Q 009066 239 VTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDL 318 (545)
Q Consensus 239 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 318 (545)
..|..+...+.+.|++++|+..|++.... .|+... +...|+.+++...+. ...|..+..+
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~~ 239 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHHH
Confidence 45667777888899999999999998764 444432 233344444433221 2367788888
Q ss_pred HhHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHH-HHcCCchHH
Q 009066 319 LGRAGKLVEAVDLIKKM-PFKP-QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIY-AAMKKWDDV 395 (545)
Q Consensus 319 ~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~-~~~g~~~~a 395 (545)
|.+.|++++|+..+++. ...| +...|..+..+|...|++++|+..|+++++++|++.. ++..|..+. ...+..+.+
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~-a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKA-IRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHH-HHHHHHHHHHHHHHHHHHH
Confidence 88999999999888876 3334 5678888888999999999999999999999998877 777777773 445667778
Q ss_pred HHHHHHhhhCC
Q 009066 396 ARIRLSMKENN 406 (545)
Q Consensus 396 ~~~~~~m~~~~ 406 (545)
.+.++.|....
T Consensus 319 ~~~~~~~l~~~ 329 (338)
T 2if4_A 319 KEMYKGIFKGK 329 (338)
T ss_dssp -----------
T ss_pred HHHHHHhhCCC
Confidence 88888876543
No 186
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.98 E-value=4.5e-06 Score=66.49 Aligned_cols=61 Identities=18% Similarity=0.115 Sum_probs=33.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchHHHHHHHHhh
Q 009066 342 AIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMK 403 (545)
Q Consensus 342 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 403 (545)
..|..+...+...|++++|+..++++++.+|++.. ++..++.+|...|++++|...+++..
T Consensus 28 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~al 88 (117)
T 3k9i_A 28 ECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQA-LRVFYAMVLYNLGRYEQGVELLLKII 88 (117)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-HHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchH-HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34455555555555555555555555555555544 55555555555555555555555443
No 187
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.94 E-value=9.5e-05 Score=74.46 Aligned_cols=125 Identities=9% Similarity=0.032 Sum_probs=97.4
Q ss_pred HHHccCcHHHHHHHHHHhHHhcC--CC---C-CHHHHHHHHHHHhHcCCHHHHHHHHHhC---------CCCCCH-hHHH
Q 009066 282 ACNHAGLVDLGIQYFDSMVNDYG--IA---A-KPDHYTCMVDLLGRAGKLVEAVDLIKKM---------PFKPQP-AIFG 345 (545)
Q Consensus 282 a~~~~g~~~~a~~~~~~~~~~~~--~~---~-~~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~~-~~~~ 345 (545)
.+...|++++|..++++..+... +. | ...+++.|..+|...|++++|..++++. +..|++ .+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 35578899999888877665321 11 2 2567889999999999999999888765 344554 6789
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhc-----CCCCCCc--hhHHHHHHHHHHcCCchHHHHHHHHhhhCC
Q 009066 346 TLLSACRVHKRLDLAEFAAMNLFN-----LNPANAA--GCYVQLANIYAAMKKWDDVARIRLSMKENN 406 (545)
Q Consensus 346 ~li~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 406 (545)
.|...|...|++++|+.+++++++ ++|+.+. .....|..++...|++++|..++.++++.-
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999875 5777654 134577888889999999999999998743
No 188
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.93 E-value=2.3e-05 Score=66.42 Aligned_cols=128 Identities=13% Similarity=-0.016 Sum_probs=82.8
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHH
Q 009066 239 VTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDL 318 (545)
Q Consensus 239 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 318 (545)
..+......+.+.|++++|+..|++.+.. +............. +..+ .+.+...|..+..+
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~------------~~~~~~~~~~~~~~--~~~~-----~~~~~~~~~nla~~ 72 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTR------------LDTLILREKPGEPE--WVEL-----DRKNIPLYANMSQC 72 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------HHHHHHTSCTTSHH--HHHH-----HHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH------------HHHhcccCCCCHHH--HHHH-----HHHHHHHHHHHHHH
Confidence 45666666777777777777777776542 00000000000000 0000 12335678888899
Q ss_pred HhHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHH
Q 009066 319 LGRAGKLVEAVDLIKKM-PFKP-QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANI 385 (545)
Q Consensus 319 ~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~ 385 (545)
|.+.|++++|+..+++. ...| +...|..+..++...|++++|...++++++++|++.......|..+
T Consensus 73 ~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~ 141 (162)
T 3rkv_A 73 YLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIV 141 (162)
T ss_dssp HHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 99999999999988877 3334 5678899999999999999999999999999998863134444333
No 189
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.92 E-value=7.4e-06 Score=64.11 Aligned_cols=92 Identities=12% Similarity=-0.031 Sum_probs=73.6
Q ss_pred CHHHHHHHHHHHhHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC------CchhH
Q 009066 308 KPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKP-QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPAN------AAGCY 379 (545)
Q Consensus 308 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~ 379 (545)
+...+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..++++++++|++ .. .+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~-~~ 81 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSK-LQ 81 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHH-HH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHH-HH
Confidence 4566777888888899999999888876 2234 66788899999999999999999999999999987 54 67
Q ss_pred HHHHHHHHHcCCchHHHHHHH
Q 009066 380 VQLANIYAAMKKWDDVARIRL 400 (545)
Q Consensus 380 ~~l~~~~~~~g~~~~a~~~~~ 400 (545)
..++.++...|++++|...++
T Consensus 82 ~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHHhHhhhHhHHH
Confidence 777888888777776655443
No 190
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.91 E-value=3e-05 Score=74.65 Aligned_cols=113 Identities=10% Similarity=-0.047 Sum_probs=88.0
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhc
Q 009066 275 TFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVH 354 (545)
Q Consensus 275 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~ 354 (545)
.+..+...+...|++++|...|++..+. .|+... +...|+.+++...+. ...|..+..+|.+.
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~~-------~~~~~~~~~~~~~l~-------~~~~~nla~~~~~~ 243 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAY---MGDDFM-------FQLYGKYQDMALAVK-------NPCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHH---SCHHHH-------HTCCHHHHHHHHHHH-------THHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH---hccchh-------hhhcccHHHHHHHHH-------HHHHHHHHHHHHHc
Confidence 3555666778889999999999887753 343321 233444455444332 23788899999999
Q ss_pred CCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchHHHHHHHHhhhC
Q 009066 355 KRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKEN 405 (545)
Q Consensus 355 g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 405 (545)
|++++|+..++++++++|++.. +|..++.+|...|++++|...+++..+.
T Consensus 244 g~~~~A~~~~~~al~~~p~~~~-a~~~lg~a~~~~g~~~~A~~~l~~al~l 293 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTEEEKNPK-ALFRRGKAKAELGQMDSARDDFRKAQKY 293 (338)
T ss_dssp TCCHHHHHHHHHHHHHCTTCHH-HHHHHHHHHHTTTCHHHHHHHHHHTTC-
T ss_pred CCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999999987 9999999999999999999999998654
No 191
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.91 E-value=0.00039 Score=71.70 Aligned_cols=168 Identities=9% Similarity=-0.030 Sum_probs=127.4
Q ss_pred HHHHHHHHHhccC---CChhhHHHHHHHHHHcCC----------hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC--
Q 009066 223 LEDACKLFLEIQR---KDVVTWNAMISGYAQHGK----------GEKALRLFDKMKDEGMKPDSITFVALLLACNHAG-- 287 (545)
Q Consensus 223 ~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g-- 287 (545)
-++|.+.++++.. .+..+|+.--..+...|+ ++++++.++++.+...+ +..+|..-..++.+.+
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSSC
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccc
Confidence 3566777777653 345667776666666666 78888888888876433 5666776666777778
Q ss_pred cHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcC-CHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhc----------
Q 009066 288 LVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAG-KLVEAVDLIKKM-PFKP-QPAIFGTLLSACRVH---------- 354 (545)
Q Consensus 288 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~---------- 354 (545)
+++++.+.++++.+. -+.+...|+.-.-++.+.| ..+++++.++++ ...| |...|+.....+...
T Consensus 124 ~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~ 201 (567)
T 1dce_A 124 NWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQG 201 (567)
T ss_dssp CHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred cHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccc
Confidence 678888888888874 2556777777777777888 888899888887 4444 667888877776653
Q ss_pred ----CCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchH
Q 009066 355 ----KRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDD 394 (545)
Q Consensus 355 ----g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~ 394 (545)
+.++++.+.+.+++..+|++.. +|..+...+.+.++.++
T Consensus 202 ~~~~~~~~eel~~~~~ai~~~P~~~s-aW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 202 RLPENVLLKELELVQNAFFTDPNDQS-AWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSCHHHHHHHHHHHHHHHHHCSSCSH-HHHHHHHHHSCCCCCSC
T ss_pred cccHHHHHHHHHHHHHHHhhCCCCcc-HHHHHHHHHhcCCCccc
Confidence 5578999999999999999998 99999999999888555
No 192
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.89 E-value=1.1e-05 Score=64.17 Aligned_cols=90 Identities=11% Similarity=0.125 Sum_probs=55.8
Q ss_pred cCcHHHHHHHHHHhHHhcC--CCCCHHHHHHHHHHHhHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHH
Q 009066 286 AGLVDLGIQYFDSMVNDYG--IAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKP-QPAIFGTLLSACRVHKRLDLAE 361 (545)
Q Consensus 286 ~g~~~~a~~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~A~ 361 (545)
.|++++|+..|++..+. + -+.+...+..+..+|.+.|++++|...|++. ...| +...+..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 45566666666665532 1 1223455666677777777777777777665 2223 4566777777777788888888
Q ss_pred HHHHHHhcCCCCCCc
Q 009066 362 FAAMNLFNLNPANAA 376 (545)
Q Consensus 362 ~~~~~~~~~~p~~~~ 376 (545)
..++++++..|+++.
T Consensus 82 ~~~~~al~~~p~~~~ 96 (117)
T 3k9i_A 82 ELLLKIIAETSDDET 96 (117)
T ss_dssp HHHHHHHHHHCCCHH
T ss_pred HHHHHHHHhCCCcHH
Confidence 888888777777653
No 193
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.84 E-value=0.00017 Score=72.49 Aligned_cols=134 Identities=10% Similarity=0.015 Sum_probs=67.5
Q ss_pred cccHHHHHHHHHhcCCHHHHHHHHHhccC--CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 009066 207 TTALTPLISMYCKCGDLEDACKLFLEIQR--KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 284 (545)
Q Consensus 207 ~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 284 (545)
...+..+...|.+.|++++|...|++..+ |+...+ ..++..+ .... ....|..+..++.
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~-----------~~~~~~~-~~~~-------~~~~~~nla~~~~ 328 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGL-----------SEKESKA-SESF-------LLAAFLNLAMCYL 328 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSC-----------CHHHHHH-HHHH-------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccC-----------ChHHHHH-HHHH-------HHHHHHHHHHHHH
Confidence 44677889999999999999999998764 221000 0000000 0000 1123334444444
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHH
Q 009066 285 HAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKP-QPAIFGTLLSACRVHKRLDLAE 361 (545)
Q Consensus 285 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~A~ 361 (545)
+.|++++|+..+++.++. .+.+...|..+..+|...|++++|...|++. .+.| +...+..+...+...++.+++.
T Consensus 329 ~~g~~~~A~~~~~~al~~--~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 329 KLREYTKAVECCDKALGL--DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555444432 1233445555555555555555555555554 3333 2345555555555555555544
No 194
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.82 E-value=4.8e-05 Score=63.24 Aligned_cols=66 Identities=11% Similarity=-0.017 Sum_probs=52.2
Q ss_pred HHHHHHHHHhHcCCHHHHHHHHHhC-C-------CCCCH-hHH----HHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCc
Q 009066 311 HYTCMVDLLGRAGKLVEAVDLIKKM-P-------FKPQP-AIF----GTLLSACRVHKRLDLAEFAAMNLFNLNPANAA 376 (545)
Q Consensus 311 ~~~~li~~~~~~g~~~~A~~~~~~m-~-------~~p~~-~~~----~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 376 (545)
.|..+..++.+.|++++|+..+++. . +.|+. ..| .....++...|++++|+..|+++++++|++..
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~ 137 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG 137 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHH
Confidence 6666666677777777666666554 3 37754 678 89999999999999999999999999998876
No 195
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.76 E-value=9.7e-05 Score=55.10 Aligned_cols=82 Identities=18% Similarity=0.182 Sum_probs=65.5
Q ss_pred CHHHHHHHHHHHhHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHH
Q 009066 308 KPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKP-QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANI 385 (545)
Q Consensus 308 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~ 385 (545)
+...+..+...|.+.|++++|...|++. ...| +...|..+...+...|++++|...++++++.+|++.. ++..++.+
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~-~~~~l~~~ 86 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE-AKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-HHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHH-HHHHHHHH
Confidence 3556777888888888888888888776 2223 5678888888999999999999999999999998877 88888888
Q ss_pred HHHcC
Q 009066 386 YAAMK 390 (545)
Q Consensus 386 ~~~~g 390 (545)
+...|
T Consensus 87 ~~~~g 91 (91)
T 1na3_A 87 KQKQG 91 (91)
T ss_dssp HHHHC
T ss_pred HHhcC
Confidence 76654
No 196
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.69 E-value=0.00013 Score=55.93 Aligned_cols=64 Identities=19% Similarity=0.179 Sum_probs=58.7
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchHHHHHHHHhhh
Q 009066 340 QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKE 404 (545)
Q Consensus 340 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 404 (545)
+...|..+...+...|++++|+..|+++++++|++.. +|..++.+|...|++++|.+.+++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~-a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVG-TYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTH-HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH-HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5678889999999999999999999999999999988 999999999999999999999988765
No 197
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.61 E-value=0.00043 Score=67.34 Aligned_cols=117 Identities=7% Similarity=-0.030 Sum_probs=66.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhccC-------------------CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCC
Q 009066 210 LTPLISMYCKCGDLEDACKLFLEIQR-------------------KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMK 270 (545)
Q Consensus 210 ~~~li~~y~~~g~~~~A~~~f~~~~~-------------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 270 (545)
+..+...|.+.|++++|.+.|++..+ .+...|+.+..+|.+.|++++|+..+++.++.. +
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p 304 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID-P 304 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-T
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-c
Confidence 44566777777777777777776543 133455566666666666666666666666532 1
Q ss_pred CCHHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHH
Q 009066 271 PDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAV 329 (545)
Q Consensus 271 p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 329 (545)
.+...+..+..++...|++++|...|++..+. .+.+...+..+..++.+.++.+++.
T Consensus 305 ~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 305 SNTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 23445555555666666666666666655542 1223444555555555555555443
No 198
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.59 E-value=0.00013 Score=57.52 Aligned_cols=76 Identities=12% Similarity=0.051 Sum_probs=59.2
Q ss_pred HHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchHHHHHHHHhhh
Q 009066 328 AVDLIKKM-PFKP-QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKE 404 (545)
Q Consensus 328 A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 404 (545)
|++.|++. ...| +...|..+...+...|++++|+..++++++.+|++.. ++..++.+|...|++++|...+++..+
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSV-AWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHH-HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44455444 2334 5677888888888888888888888888888888877 888888888888999888888887765
No 199
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.54 E-value=0.00029 Score=70.96 Aligned_cols=123 Identities=12% Similarity=0.027 Sum_probs=87.0
Q ss_pred HHHHcCChHHHHHHHHHHHHc---CCCCC----HHHHHHHHHHHHccCcHHHHHHHHHHhHHh----cCC-CCC-HHHHH
Q 009066 247 GYAQHGKGEKALRLFDKMKDE---GMKPD----SITFVALLLACNHAGLVDLGIQYFDSMVND----YGI-AAK-PDHYT 313 (545)
Q Consensus 247 ~~~~~g~~~~A~~~~~~m~~~---g~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~----~~~-~~~-~~~~~ 313 (545)
.+..+|++++|+.++++.++. -+-|+ ..+++.|..+|...|++++|..++++...- +|- .|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 355678888888888887652 12222 246778888888889998888888776542 121 222 45688
Q ss_pred HHHHHHhHcCCHHHHHHHHHhC---------CCCCCH-hHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 009066 314 CMVDLLGRAGKLVEAVDLIKKM---------PFKPQP-AIFGTLLSACRVHKRLDLAEFAAMNLFN 369 (545)
Q Consensus 314 ~li~~~~~~g~~~~A~~~~~~m---------~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~ 369 (545)
.|...|...|++++|..++++. +-.|++ .+.+.+..++...+.++.|+.++.++.+
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999888765 333444 3445666677788889999999888754
No 200
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.45 E-value=5.3e-05 Score=62.82 Aligned_cols=82 Identities=7% Similarity=0.022 Sum_probs=58.8
Q ss_pred CCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCC----------HHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcC
Q 009066 323 GKLVEAVDLIKKM-PFKP-QPAIFGTLLSACRVHKR----------LDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMK 390 (545)
Q Consensus 323 g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~----------~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g 390 (545)
+.+++|.+.+++. ...| +...|..+..++...++ +++|+..|+++++++|+... +|..++.+|...|
T Consensus 16 ~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~-A~~~LG~ay~~lg 94 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDE-AVWCIGNAYTSFA 94 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHH-HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHH-HHHHHHHHHHHhc
Confidence 3444444444443 1222 34445545555544443 56999999999999999988 9999999999875
Q ss_pred -----------CchHHHHHHHHhhhC
Q 009066 391 -----------KWDDVARIRLSMKEN 405 (545)
Q Consensus 391 -----------~~~~a~~~~~~m~~~ 405 (545)
++++|.+.|++..+.
T Consensus 95 ~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 95 FLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCcchhhhhccHHHHHHHHHHHHHh
Confidence 899999999998764
No 201
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.43 E-value=0.00041 Score=68.73 Aligned_cols=117 Identities=10% Similarity=0.094 Sum_probs=83.8
Q ss_pred HHHHhHcCCHHHHHHHHHhC---------CCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHhc-----CCCCCCc--hh
Q 009066 316 VDLLGRAGKLVEAVDLIKKM---------PFKPQ-PAIFGTLLSACRVHKRLDLAEFAAMNLFN-----LNPANAA--GC 378 (545)
Q Consensus 316 i~~~~~~g~~~~A~~~~~~m---------~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~--~~ 378 (545)
+.-+.+.|++++|..++++. +..|+ ..+++.|..+|...|++++|+.+++++++ .+|+++. .+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 44456778888888887655 11222 25788888899999999999999988865 3455432 26
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHhhhCCCccCCceeEEEECCEEEEEecCCCCCCChHHHHHHHHHHHHHHH
Q 009066 379 YVQLANIYAAMKKWDDVARIRLSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMK 450 (545)
Q Consensus 379 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~m~ 450 (545)
++.|+.+|...|++++|..++++..+--.. .-...||...+++..+.+...+|+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRV------------------THGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHH------------------hcCCCChHHHHHHHHHHHHHHHHh
Confidence 788999999999999999999887642110 112358988888888887777765
No 202
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.40 E-value=0.00014 Score=60.38 Aligned_cols=108 Identities=14% Similarity=0.134 Sum_probs=63.0
Q ss_pred cHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCC----------HHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhc-
Q 009066 288 LVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGK----------LVEAVDLIKKM-PFKP-QPAIFGTLLSACRVH- 354 (545)
Q Consensus 288 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~- 354 (545)
.+++|.+.++...+. -+.+...|..+..++...|+ +++|+..|++. .+.| +...|..+..+|...
T Consensus 17 ~feeA~~~~~~Ai~l--~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg 94 (158)
T 1zu2_A 17 LFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFA 94 (158)
T ss_dssp HHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhc
Confidence 444455554444432 13344444444444444443 34666666655 3344 345666777777665
Q ss_pred ----------CCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchHHHHHHHHhhhC
Q 009066 355 ----------KRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKEN 405 (545)
Q Consensus 355 ----------g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 405 (545)
|++++|+..|+++++++|++. .|...+... ++|.+++-.....
T Consensus 95 ~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~--~y~~al~~~------~ka~el~~~~~~~ 147 (158)
T 1zu2_A 95 FLTPDETEAKHNFDLATQFFQQAVDEQPDNT--HYLKSLEMT------AKAPQLHAEAYKQ 147 (158)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH--HHHHHHHHH------HTHHHHHHHHHHS
T ss_pred ccCcchhhhhccHHHHHHHHHHHHHhCCCCH--HHHHHHHHH------HhCHhccCccccc
Confidence 589999999999999999986 454444433 4455555555444
No 203
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.31 E-value=0.0038 Score=50.92 Aligned_cols=109 Identities=15% Similarity=-0.044 Sum_probs=54.3
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhH----cCCHHHH
Q 009066 253 KGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGR----AGKLVEA 328 (545)
Q Consensus 253 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A 328 (545)
++++|+..|++..+.| .|+.. +-..|...+.+++|.++|++..+. .++..+..|..+|.. .+++++|
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHHH
Confidence 4556666666666555 23332 334444555555666666655542 344455555555555 4555555
Q ss_pred HHHHHhCCCCCCHhHHHHHHHHHHh----cCCHHHHHHHHHHHhcC
Q 009066 329 VDLIKKMPFKPQPAIFGTLLSACRV----HKRLDLAEFAAMNLFNL 370 (545)
Q Consensus 329 ~~~~~~m~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~ 370 (545)
.+.|++.-...+...+..|...|.. .++.++|...+++..+.
T Consensus 81 ~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 81 AQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 5555544111344444444444444 44555555555544443
No 204
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.29 E-value=0.00023 Score=55.23 Aligned_cols=94 Identities=11% Similarity=0.091 Sum_probs=56.3
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCC-------HH
Q 009066 238 VVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAK-------PD 310 (545)
Q Consensus 238 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~ 310 (545)
...|..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|...++...+ +.|+ ..
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~~~ 79 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR---YTSTAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---SCSSTTSHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---hCCCccHHHHHHH
Confidence 4456666677777777777777777776642 22455566666667777777777777766654 2333 34
Q ss_pred HHHHHHHHHhHcCCHHHHHHHHHhC
Q 009066 311 HYTCMVDLLGRAGKLVEAVDLIKKM 335 (545)
Q Consensus 311 ~~~~li~~~~~~g~~~~A~~~~~~m 335 (545)
.+..+..++...|+.++|.+.++++
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHHHHhHhhhHhHHHHh
Confidence 4455555555555555555444443
No 205
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.25 E-value=0.0067 Score=62.46 Aligned_cols=151 Identities=10% Similarity=-0.001 Sum_probs=118.4
Q ss_pred HcC-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCc----------HHHHHHHHHHhHHhcCCCCCHHHHHHHHHH
Q 009066 250 QHG-KGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGL----------VDLGIQYFDSMVNDYGIAAKPDHYTCMVDL 318 (545)
Q Consensus 250 ~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 318 (545)
+.| ..++|++.++++...+.. +...|+.--.++...|+ ++++.+.++.+.+. .+.+...|..-.-+
T Consensus 40 ~~~~~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~ 116 (567)
T 1dce_A 40 QAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWL 116 (567)
T ss_dssp HTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 344 457889999999985322 34445544445555555 89999999999874 36678888888888
Q ss_pred HhHcC--CHHHHHHHHHhC-CCC-CCHhHHHHHHHHHHhcC-CHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHc----
Q 009066 319 LGRAG--KLVEAVDLIKKM-PFK-PQPAIFGTLLSACRVHK-RLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAM---- 389 (545)
Q Consensus 319 ~~~~g--~~~~A~~~~~~m-~~~-p~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~---- 389 (545)
+.+.| ++++|++.++++ ... .|...|+.-...+...| .++++.+.++++++.+|.+.. +|.....++.+.
T Consensus 117 l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~s-aW~~r~~ll~~l~~~~ 195 (567)
T 1dce_A 117 LSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYS-SWHYRSCLLPQLHPQP 195 (567)
T ss_dssp HHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHH-HHHHHHHHHHHHSCCC
T ss_pred HHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCcc-HHHHHHHHHHhhcccc
Confidence 88999 779999999998 333 47789999888888889 899999999999999999988 999999988874
Q ss_pred ----------CCchHHHHHHHHhhh
Q 009066 390 ----------KKWDDVARIRLSMKE 404 (545)
Q Consensus 390 ----------g~~~~a~~~~~~m~~ 404 (545)
+.++++.+.++....
T Consensus 196 ~~~~~~~~~~~~~~eel~~~~~ai~ 220 (567)
T 1dce_A 196 DSGPQGRLPENVLLKELELVQNAFF 220 (567)
T ss_dssp CSSSCCSSCHHHHHHHHHHHHHHHH
T ss_pred cccccccccHHHHHHHHHHHHHHHh
Confidence 456778777776654
No 206
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.24 E-value=0.0031 Score=51.44 Aligned_cols=113 Identities=12% Similarity=-0.094 Sum_probs=94.1
Q ss_pred CcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHh----cCCHHHHHH
Q 009066 287 GLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRV----HKRLDLAEF 362 (545)
Q Consensus 287 g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~----~g~~~~A~~ 362 (545)
++.++|.++|++..+. + .|... |..+|...+.+++|.+.|++.-...+...+..|...|.. .+++++|..
T Consensus 9 ~d~~~A~~~~~~aa~~-g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 9 KDLKKAIQYYVKACEL-N-EMFGC----LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHHHT-T-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred cCHHHHHHHHHHHHcC-C-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 4788999999998874 4 33333 888888889999999999987333678888899999988 899999999
Q ss_pred HHHHHhcCCCCCCchhHHHHHHHHHH----cCCchHHHHHHHHhhhCCCc
Q 009066 363 AAMNLFNLNPANAAGCYVQLANIYAA----MKKWDDVARIRLSMKENNVV 408 (545)
Q Consensus 363 ~~~~~~~~~p~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~~ 408 (545)
.|++..+.+ ++. ++..|..+|.. .++.++|.+.+++..+.|..
T Consensus 83 ~~~~Aa~~g--~~~-a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~ 129 (138)
T 1klx_A 83 YYSKACGLN--DQD-GCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE 129 (138)
T ss_dssp HHHHHHHTT--CHH-HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCC--CHH-HHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCCH
Confidence 999998873 444 89999999999 89999999999999887653
No 207
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.20 E-value=0.0012 Score=51.81 Aligned_cols=80 Identities=9% Similarity=-0.040 Sum_probs=51.6
Q ss_pred HHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 009066 292 GIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKP-QPAIFGTLLSACRVHKRLDLAEFAAMNLFN 369 (545)
Q Consensus 292 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 369 (545)
+...++...+ ..+.+...+..+...|.+.|++++|...|++. ...| +...|..+...+...|++++|...++++++
T Consensus 4 a~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLA--QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHT--TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4445555543 22344566667777777777777777777665 2223 456677777777777888888877777777
Q ss_pred CCCC
Q 009066 370 LNPA 373 (545)
Q Consensus 370 ~~p~ 373 (545)
+.|.
T Consensus 82 ~~~~ 85 (115)
T 2kat_A 82 AAQS 85 (115)
T ss_dssp HHHH
T ss_pred hccc
Confidence 6664
No 208
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.18 E-value=0.0016 Score=48.99 Aligned_cols=68 Identities=12% Similarity=0.091 Sum_probs=57.7
Q ss_pred CCHhHHHHHHHHHHhcCC---HHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchHHHHHHHHhhhCCC
Q 009066 339 PQPAIFGTLLSACRVHKR---LDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNV 407 (545)
Q Consensus 339 p~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 407 (545)
+|...+..+..++...++ .++|..+++++++++|++.. +...++..+...|++++|...|+++.+..-
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~r-A~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEA-ALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHH-HHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 466778888887765555 68999999999999999988 999999999999999999999999987643
No 209
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.11 E-value=0.024 Score=61.14 Aligned_cols=152 Identities=13% Similarity=0.146 Sum_probs=98.5
Q ss_pred HcCCCCHHHHHH-HHhcCCCCCeehHHHHHHHHHhCCCHHHHHHHHhhCCcCCHhHHHHHHHHHHHcCChHHHHHHHhhC
Q 009066 49 LLNSDDVVAAFD-FFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVA 127 (545)
Q Consensus 49 ~~~~g~~~~A~~-~~~~m~~~d~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~ 127 (545)
... +++++|.+ ++..++ +......++..+.+.|..++|+++.+. . ..-......+|++++|.++.+.+
T Consensus 610 ~~~-~~~~~a~~~~l~~i~--~~~~~~~~~~~l~~~~~~~~a~~~~~~-----~---~~~f~~~l~~~~~~~A~~~~~~~ 678 (814)
T 3mkq_A 610 TLR-GEIEEAIENVLPNVE--GKDSLTKIARFLEGQEYYEEALNISPD-----Q---DQKFELALKVGQLTLARDLLTDE 678 (814)
T ss_dssp HHT-TCHHHHHHHTGGGCC--CHHHHHHHHHHHHHTTCHHHHHHHCCC-----H---HHHHHHHHHHTCHHHHHHHHTTC
T ss_pred HHh-CCHHHHHHHHHhcCC--chHHHHHHHHHHHhCCChHHheecCCC-----c---chheehhhhcCCHHHHHHHHHhh
Confidence 445 78888887 554443 122336777778888888888876632 1 12244567788999998888776
Q ss_pred CCCCcccHHHHHHHhcchhhhccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhCCCCCCc
Q 009066 128 PVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDT 207 (545)
Q Consensus 128 ~~~~~~~~~~li~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 207 (545)
. +...|..+...+ .+.++++.|.+.|.++.. |..+...+...++.+...++-+.....|
T Consensus 679 ~--~~~~W~~la~~a-----l~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~----- 737 (814)
T 3mkq_A 679 S--AEMKWRALGDAS-----LQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTG----- 737 (814)
T ss_dssp C--CHHHHHHHHHHH-----HHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTT-----
T ss_pred C--cHhHHHHHHHHH-----HHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcC-----
Confidence 3 456888888888 888899999888887752 2234444444666666666555555544
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHhc
Q 009066 208 TALTPLISMYCKCGDLEDACKLFLEI 233 (545)
Q Consensus 208 ~~~~~li~~y~~~g~~~~A~~~f~~~ 233 (545)
-++.....|.++|++++|.+++.++
T Consensus 738 -~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 738 -KFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp -CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred -chHHHHHHHHHcCCHHHHHHHHHHc
Confidence 2344455566677777776665433
No 210
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.03 E-value=0.014 Score=55.38 Aligned_cols=138 Identities=14% Similarity=0.031 Sum_probs=76.8
Q ss_pred CChhhHHHHHHHHHH--cC---ChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHH----cc----CcHHHHHHHHHHhHH
Q 009066 236 KDVVTWNAMISGYAQ--HG---KGEKALRLFDKMKDEGMKPDS-ITFVALLLACN----HA----GLVDLGIQYFDSMVN 301 (545)
Q Consensus 236 ~~~~~~~~li~~~~~--~g---~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~----~~----g~~~~a~~~~~~~~~ 301 (545)
.+..+|...+.+... .+ ...+|+.+|++..+. .|+- ..+..+.-++. .. .........+.....
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 356666666655432 22 246777788877764 4542 23332222221 00 011111111111111
Q ss_pred hcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhC-CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC
Q 009066 302 DYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANA 375 (545)
Q Consensus 302 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~ 375 (545)
....+.++..|.++.-.+...|++++|...++++ ...|+...|..+...+...|++++|...+++++.++|...
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence 1123556677777766666677788777777776 3346666666666777777888888888877777777654
No 211
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.00 E-value=0.0072 Score=44.46 Aligned_cols=78 Identities=14% Similarity=0.231 Sum_probs=38.6
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHH
Q 009066 240 TWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLL 319 (545)
Q Consensus 240 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 319 (545)
.|..+...+...|++++|+..|++..... +.+...+..+..++...|++++|...+++..+. .+.+...+..+..++
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCHHHHHHHHHHH
Confidence 44455555555555555555555555432 123344445555555555555555555555442 122344444444444
Q ss_pred h
Q 009066 320 G 320 (545)
Q Consensus 320 ~ 320 (545)
.
T Consensus 88 ~ 88 (91)
T 1na3_A 88 Q 88 (91)
T ss_dssp H
T ss_pred H
Confidence 3
No 212
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.97 E-value=0.0039 Score=61.58 Aligned_cols=91 Identities=7% Similarity=-0.100 Sum_probs=62.0
Q ss_pred ccCcHHHHHHHHHHhHHhc--CCCC----CHHHHHHHHHHHhHcCCHHHHHHHHHhC---------CCCCCH-hHHHHHH
Q 009066 285 HAGLVDLGIQYFDSMVNDY--GIAA----KPDHYTCMVDLLGRAGKLVEAVDLIKKM---------PFKPQP-AIFGTLL 348 (545)
Q Consensus 285 ~~g~~~~a~~~~~~~~~~~--~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~~-~~~~~li 348 (545)
..|++++|..++++..+.. -+.| ...+++.|..+|...|++++|..++++. +..|++ .+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 3467777777776655421 1112 1456777888888888888888777665 334554 5678888
Q ss_pred HHHHhcCCHHHHHHHHHHHhc-----CCCCCC
Q 009066 349 SACRVHKRLDLAEFAAMNLFN-----LNPANA 375 (545)
Q Consensus 349 ~~~~~~g~~~~A~~~~~~~~~-----~~p~~~ 375 (545)
..|...|++++|+.+++++++ ++|+.+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp 421 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHP 421 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCCh
Confidence 888888888888888888765 567665
No 213
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.96 E-value=0.0009 Score=66.19 Aligned_cols=84 Identities=6% Similarity=0.029 Sum_probs=67.7
Q ss_pred HcCCHHHHHHHHHhC---------CCCCCH-hHHHHHHHHHHhcCCHHHHHHHHHHHhc-----CCCCCCc--hhHHHHH
Q 009066 321 RAGKLVEAVDLIKKM---------PFKPQP-AIFGTLLSACRVHKRLDLAEFAAMNLFN-----LNPANAA--GCYVQLA 383 (545)
Q Consensus 321 ~~g~~~~A~~~~~~m---------~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~--~~~~~l~ 383 (545)
..|++++|..++++. +..|+. .+++.|..+|...|++++|+.+++++++ ++|+++. .+++.|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 357888888887764 333444 6889999999999999999999999875 4555443 2688999
Q ss_pred HHHHHcCCchHHHHHHHHhhh
Q 009066 384 NIYAAMKKWDDVARIRLSMKE 404 (545)
Q Consensus 384 ~~~~~~g~~~~a~~~~~~m~~ 404 (545)
.+|...|++++|..++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999998764
No 214
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.93 E-value=0.0072 Score=59.76 Aligned_cols=97 Identities=9% Similarity=-0.031 Sum_probs=72.3
Q ss_pred HHHHHccCcHHHHHHHHHHhHHhc--CCCCC----HHHHHHHHHHHhHcCCHHHHHHHHHhC---------CCCCCH-hH
Q 009066 280 LLACNHAGLVDLGIQYFDSMVNDY--GIAAK----PDHYTCMVDLLGRAGKLVEAVDLIKKM---------PFKPQP-AI 343 (545)
Q Consensus 280 l~a~~~~g~~~~a~~~~~~~~~~~--~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~~-~~ 343 (545)
+..+...|++++|..++++..+.. -+.|+ ..+++.|..+|...|++++|+.++++. +..|+. .+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 444556788888888887776432 12222 456788888888899999988888765 344554 57
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhc-----CCCCCCc
Q 009066 344 FGTLLSACRVHKRLDLAEFAAMNLFN-----LNPANAA 376 (545)
Q Consensus 344 ~~~li~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~ 376 (545)
++.|...|...|++++|+.+++++++ ++|+.+.
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~ 411 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSL 411 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChH
Confidence 88999999999999999999998876 5787764
No 215
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.92 E-value=0.0041 Score=47.32 Aligned_cols=58 Identities=17% Similarity=0.129 Sum_probs=25.6
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHHH
Q 009066 208 TALTPLISMYCKCGDLEDACKLFLEIQR---KDVVTWNAMISGYAQHGKGEKALRLFDKMK 265 (545)
Q Consensus 208 ~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 265 (545)
..+..+...|.+.|++++|...|++..+ .+...|..+..+|...|++++|+..|++..
T Consensus 8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 8 FTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3344444444444444444444444432 123344444444444444444444444433
No 216
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.78 E-value=0.0062 Score=45.91 Aligned_cols=64 Identities=17% Similarity=0.169 Sum_probs=48.3
Q ss_pred HHHHHhHcCCHHHHHHHHHhC-CCCC-CHh-HHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhH
Q 009066 315 MVDLLGRAGKLVEAVDLIKKM-PFKP-QPA-IFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCY 379 (545)
Q Consensus 315 li~~~~~~g~~~~A~~~~~~m-~~~p-~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 379 (545)
....+.+.|++++|.+.|++. ...| +.. .|..+...+...|++++|+..|+++++++|++.. ++
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPA-LQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTH-HH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH-HH
Confidence 455667778888888888776 2234 456 7788888888888888888888888888888875 44
No 217
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.76 E-value=0.04 Score=59.42 Aligned_cols=47 Identities=21% Similarity=0.215 Sum_probs=26.2
Q ss_pred HHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Q 009066 217 YCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMK 265 (545)
Q Consensus 217 y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 265 (545)
...+|++++|.++.+.+. +...|..+...+.+.|+++.|.+.|.++.
T Consensus 662 ~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred hhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 344555666555554442 34556666666666666666666666553
No 218
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.57 E-value=0.011 Score=48.38 Aligned_cols=65 Identities=8% Similarity=-0.062 Sum_probs=46.8
Q ss_pred CCHhHHHHHHHHHHhcC---CHHHHHHHHHHHhcCC-C-CCCchhHHHHHHHHHHcCCchHHHHHHHHhhh
Q 009066 339 PQPAIFGTLLSACRVHK---RLDLAEFAAMNLFNLN-P-ANAAGCYVQLANIYAAMKKWDDVARIRLSMKE 404 (545)
Q Consensus 339 p~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~-p-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 404 (545)
++..+...+..++.+.+ +.++|+.+++.+++.+ | +... .+..|+-+|.+.|++++|++.++.+.+
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd-~lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRD-YVFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHH-HHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHH-HHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 56666666777777766 5557788888777776 6 3334 677777788888888888888887765
No 219
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.44 E-value=0.089 Score=49.98 Aligned_cols=163 Identities=10% Similarity=0.015 Sum_probs=84.1
Q ss_pred HHHHHHhhCCCCCcccHHHHHHHhcchhhhccCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHH
Q 009066 119 KAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNA-SSLSSVLLGCSHLSSLQLGKQVHQL 197 (545)
Q Consensus 119 ~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~pd~-~t~~~ll~~~~~~~~~~~a~~~~~~ 197 (545)
++.+.... +..+..+|...+.+.............+|+.+|++..+. .|+. ..+..+.-++..
T Consensus 182 e~~r~~~~-~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~------------- 245 (372)
T 3ly7_A 182 MQETLQKI-LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIV------------- 245 (372)
T ss_dssp HHHHHHHH-SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH-------------
T ss_pred HHHHHhcc-CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH-------------
Confidence 33334444 344778888888765221111223357889999999875 4653 344433333320
Q ss_pred HHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhc--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHH
Q 009066 198 VFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEI--QRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSIT 275 (545)
Q Consensus 198 ~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 275 (545)
....+ +.+..... .+..+.+-...+ ...+..+|.++...+...|++++|+..++++...+ |+...
T Consensus 246 ~~~~~-~~~~~~~~----------~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a 312 (372)
T 3ly7_A 246 RHSQH-PLDEKQLA----------ALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLN 312 (372)
T ss_dssp HHHHS-CCCHHHHH----------HHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHH
T ss_pred HhccC-CCchhhHH----------HHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHH
Confidence 00000 00000000 011122211111 12355666666666666677777777777777654 56666
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHH
Q 009066 276 FVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYT 313 (545)
Q Consensus 276 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 313 (545)
|..+...+...|++++|.+.+++.... .|...+|.
T Consensus 313 ~~llG~~~~~~G~~~eA~e~~~~AlrL---~P~~~t~~ 347 (372)
T 3ly7_A 313 YVLLGKVYEMKGMNREAADAYLTAFNL---RPGANTLY 347 (372)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---SCSHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCcChHH
Confidence 656666666777777777777666543 55555543
No 220
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.27 E-value=0.0038 Score=47.12 Aligned_cols=55 Identities=13% Similarity=0.164 Sum_probs=26.0
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCcHHHHHHHHHHhHH
Q 009066 246 SGYAQHGKGEKALRLFDKMKDEGMKPDSI-TFVALLLACNHAGLVDLGIQYFDSMVN 301 (545)
Q Consensus 246 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~ 301 (545)
..+.+.|++++|+..|++..+.. +.+.. .+..+..++...|++++|.+.|+...+
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34445555555555555555431 11223 444444445555555555555555443
No 221
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.24 E-value=0.32 Score=38.38 Aligned_cols=140 Identities=10% Similarity=0.069 Sum_probs=95.1
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHH
Q 009066 249 AQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEA 328 (545)
Q Consensus 249 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 328 (545)
.-.|..++..++..+..... +..-++-++.-....-+-+...+.++.+-+-+.+ ..+|++...
T Consensus 18 ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi--------------s~C~NlKrV 80 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL--------------DKCQNLKSV 80 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------GGCSCTHHH
T ss_pred HHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------HhhhcHHHH
Confidence 34566677777777665532 3334444443333334444455555555432222 356777777
Q ss_pred HHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchHHHHHHHHhhhCCCc
Q 009066 329 VDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVV 408 (545)
Q Consensus 329 ~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 408 (545)
...+-.++ .+..-.+.-+..+...|+.+.-.++...++.-+|-++. ....++.+|.+.|+..++.+++++.-++|++
T Consensus 81 i~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~-~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 81 VECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSAS-ILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHH-HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChH-HHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 77777764 45666777888899999999999999997655554445 8889999999999999999999999999885
No 222
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.20 E-value=0.031 Score=41.70 Aligned_cols=77 Identities=17% Similarity=0.108 Sum_probs=56.9
Q ss_pred CCCHHHHHHHHHHHhHcCC---HHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHH
Q 009066 306 AAKPDHYTCMVDLLGRAGK---LVEAVDLIKKM-PFKP-QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYV 380 (545)
Q Consensus 306 ~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 380 (545)
+.++..+..+..++...++ .++|..++++. ...| ++..+..+...+.+.|++++|+..++++++.+|.++ ...
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~--~~~ 80 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL--DRV 80 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC--CHH
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc--cHH
Confidence 5567778888887765544 68888888877 3345 556777778888999999999999999999998843 344
Q ss_pred HHHH
Q 009066 381 QLAN 384 (545)
Q Consensus 381 ~l~~ 384 (545)
.+..
T Consensus 81 ~i~~ 84 (93)
T 3bee_A 81 TIIE 84 (93)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 223
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.02 E-value=0.001 Score=64.66 Aligned_cols=234 Identities=11% Similarity=0.127 Sum_probs=112.0
Q ss_pred ccHHHHHHHHHHhCCCChHHHHHHHccCCCCChhhHHHHHHHHHcCCCCHHHHHHHHhcCC--CCCeehHHHHHHHHHhC
Q 009066 6 TVNWNSVLAGFAKQRGKLKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLP--IKDTASWNTMISGFVQK 83 (545)
Q Consensus 6 ~~~~~~li~~~~~~g~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~~g~~~~A~~~~~~m~--~~d~~~~~~li~~~~~~ 83 (545)
+.+|..|..++.+.+. ..+|...|=+...| ..|..+|....+. |.+++-++.+.-.+ .+++..=+.|+-+|++.
T Consensus 54 p~VWs~LgkAqL~~~~-v~eAIdsyIkA~Dp--s~y~eVi~~A~~~-~~~edLv~yL~MaRk~~ke~~IDteLi~ayAk~ 129 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGM-VKEAIDSYIKADDP--SSYMEVVQAANTS-GNWEELVKYLQMARKKARESYVETELIFALAKT 129 (624)
T ss_dssp CCCSSSHHHHTTTSSS-CTTTTTSSCCCSCC--CSSSHHHHHTTTS-SCCTTHHHHHHTTSTTCCSTTTTHHHHHHHHTS
T ss_pred ccHHHHHHHHHHccCc-hHHHHHHHHhCCCh--HHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcccccHHHHHHHHHhh
Confidence 4455566666666665 66665555433333 3345566655555 66666666554444 23444555666666666
Q ss_pred CCHHHHHHHHhhCCcCCHhHHHHHHHHHHHcCChHHHHHHHhhCC------------------------CCCcccHHHHH
Q 009066 84 KNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAP------------------------VKSVVAWTAMI 139 (545)
Q Consensus 84 g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~------------------------~~~~~~~~~li 139 (545)
+++.+-.+++. .||..-...+.+-+...|.++.|.-+|..+. ..++.+|-.+-
T Consensus 130 ~rL~elEefl~---~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~ 206 (624)
T 3lvg_A 130 NRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVC 206 (624)
T ss_dssp CSSSTTTSTTS---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHT
T ss_pred CcHHHHHHHHc---CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHH
Confidence 66554333221 2444444455556666666666666665443 12556777777
Q ss_pred HHhcchhhhccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q 009066 140 SGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCK 219 (545)
Q Consensus 140 ~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~ 219 (545)
.+| +..+.+.-|.-.--.+. +.|| ....++..|...|.+++-..+++.-+... .....+++-|.-.|+|
T Consensus 207 ~AC-----vd~~EfrLAqicGLniI---vhad--eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsK 275 (624)
T 3lvg_A 207 FAC-----VDGKEFRLAQMCGLHIV---VHAD--ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSK 275 (624)
T ss_dssp HHH-----HHSCTTTTTTHHHHHHH---CCSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHS
T ss_pred HHH-----hCchHHHHHHHhcchhc---ccHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHh
Confidence 777 44444443322222221 1111 11123333444444444444444433211 2233445555555554
Q ss_pred cCCHHHHHHHHHhccC-----------CChhhHHHHHHHHHHcCChHHHH
Q 009066 220 CGDLEDACKLFLEIQR-----------KDVVTWNAMISGYAQHGKGEKAL 258 (545)
Q Consensus 220 ~g~~~~A~~~f~~~~~-----------~~~~~~~~li~~~~~~g~~~~A~ 258 (545)
- +.++-.+.++..-. .....|.-++-.|.+..+++.|.
T Consensus 276 Y-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 276 F-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp S-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred c-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 3 23333333222211 13345666666666666655444
No 224
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.80 E-value=0.038 Score=42.22 Aligned_cols=69 Identities=12% Similarity=0.092 Sum_probs=50.2
Q ss_pred CHHHHHHHHHHHhHcCCHHHHHHHHHhC-----C----CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCc
Q 009066 308 KPDHYTCMVDLLGRAGKLVEAVDLIKKM-----P----FKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAA 376 (545)
Q Consensus 308 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-----~----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 376 (545)
++.-+..|...+.+.|+++.|...|+.. + -.+...++..|..++.+.|+++.|...+++++++.|++..
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~ 81 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQR 81 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHH
Confidence 3444556666666667766666666554 1 1134567888899999999999999999999999999865
No 225
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.49 E-value=0.79 Score=38.35 Aligned_cols=46 Identities=20% Similarity=0.290 Sum_probs=24.4
Q ss_pred HHHcCChHHHHHHHhhCCCCCcccHHHHHHHhcchhhhccCChHHHHHHHHHH
Q 009066 111 YIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMM 163 (545)
Q Consensus 111 ~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~g~~~~A~~~~~~m 163 (545)
..++|+++.|.++.+.+ .+...|..|.... ..+|+.+-|.+.|.+.
T Consensus 15 AL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~A-----L~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL--NDSITWERLIQEA-----LAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHHTTCHHHHHHHHHHH--CCHHHHHHHHHHH-----HHTTCHHHHHHHHHHT
T ss_pred HHhcCCHHHHHHHHHHh--CCHHHHHHHHHHH-----HHcCChHHHHHHHHHh
Confidence 34455555555555443 2344555555555 5555555555555544
No 226
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.48 E-value=0.034 Score=50.69 Aligned_cols=86 Identities=13% Similarity=0.096 Sum_probs=67.0
Q ss_pred HHHHHHHHHhC-CCCCC---HhHHHHHHHHHHh-----cCCHHHHHHHHHHHhcCCCCC-CchhHHHHHHHHHHc-CCch
Q 009066 325 LVEAVDLIKKM-PFKPQ---PAIFGTLLSACRV-----HKRLDLAEFAAMNLFNLNPAN-AAGCYVQLANIYAAM-KKWD 393 (545)
Q Consensus 325 ~~~A~~~~~~m-~~~p~---~~~~~~li~~~~~-----~g~~~~A~~~~~~~~~~~p~~-~~~~~~~l~~~~~~~-g~~~ 393 (545)
..+|...+++. .+.|+ ...|..|...|.+ -|+.++|++.|+++++++|+. .. +++..+..++.. |+.+
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id-~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPD-HHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSH-HHHHHHHHTTTTTTCHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCch-HHHHHHHHHHHhcCCHH
Confidence 44555555555 44565 4678888888888 499999999999999999975 66 899999998884 9999
Q ss_pred HHHHHHHHhhhCCCccCC
Q 009066 394 DVARIRLSMKENNVVKMP 411 (545)
Q Consensus 394 ~a~~~~~~m~~~~~~~~~ 411 (545)
++.+.+++.........|
T Consensus 258 ~a~~~L~kAL~a~p~~~P 275 (301)
T 3u64_A 258 GFDEALDRALAIDPESVP 275 (301)
T ss_dssp HHHHHHHHHHHCCGGGCS
T ss_pred HHHHHHHHHHcCCCCCCC
Confidence 999999998886655334
No 227
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.43 E-value=0.98 Score=37.79 Aligned_cols=129 Identities=13% Similarity=0.107 Sum_probs=81.5
Q ss_pred HHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHH
Q 009066 215 SMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQ 294 (545)
Q Consensus 215 ~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 294 (545)
+....+|+++.|.++.+.+ .+...|..+......+|+++-|.+.|.+... |..+.-.|...|+.+.-.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 3445688888888887766 4677888888888888888888888887643 2334444555677665555
Q ss_pred HHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009066 295 YFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNL 367 (545)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 367 (545)
+-+....+ | -++.-...+.-.|+++++.+++.+.+.-|... -....+|..+.|.++.+++
T Consensus 82 la~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~------~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 82 MQNIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLAY------AVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHH------HHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHHH------HHHHHcCcHHHHHHHHHHh
Confidence 44333221 1 13444455666788888888888775322211 1223466667777776655
No 228
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.42 E-value=0.04 Score=45.05 Aligned_cols=85 Identities=16% Similarity=0.045 Sum_probs=54.5
Q ss_pred HHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcC---CHHHHHHHHHhC-CCC-C--CHhHHHHHHHHHHhcCCHHHHHH
Q 009066 290 DLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAG---KLVEAVDLIKKM-PFK-P--QPAIFGTLLSACRVHKRLDLAEF 362 (545)
Q Consensus 290 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m-~~~-p--~~~~~~~li~~~~~~g~~~~A~~ 362 (545)
..+++.|.+..+. + +++..+...+.-++.+.+ ++++++.++++. ... | +...+..|.-++.+.|++++|.+
T Consensus 15 ~~~~~~y~~e~~~-~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 15 LKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHT-T-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 3344444444331 2 355555556666666655 444666666555 112 3 23456677778899999999999
Q ss_pred HHHHHhcCCCCCCc
Q 009066 363 AAMNLFNLNPANAA 376 (545)
Q Consensus 363 ~~~~~~~~~p~~~~ 376 (545)
.++.+++.+|++..
T Consensus 93 y~~~lL~ieP~n~Q 106 (152)
T 1pc2_A 93 YVRGLLQTEPQNNQ 106 (152)
T ss_dssp HHHHHHHHCTTCHH
T ss_pred HHHHHHhcCCCCHH
Confidence 99999999998864
No 229
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.09 E-value=0.13 Score=40.32 Aligned_cols=66 Identities=8% Similarity=-0.084 Sum_probs=33.3
Q ss_pred CCHhHHHHHHHHHHhcCCHHH---HHHHHHHHhcCC-CCCCchhHHHHHHHHHHcCCchHHHHHHHHhhh
Q 009066 339 PQPAIFGTLLSACRVHKRLDL---AEFAAMNLFNLN-PANAAGCYVQLANIYAAMKKWDDVARIRLSMKE 404 (545)
Q Consensus 339 p~~~~~~~li~~~~~~g~~~~---A~~~~~~~~~~~-p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 404 (545)
|+..+--.+..++.+..+... ++.+++.++..+ |.........|+-++.+.|++++|++..+.+.+
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 344444444444544444443 555555555544 311111455555666666666666666665544
No 230
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=94.58 E-value=0.0011 Score=64.34 Aligned_cols=237 Identities=11% Similarity=0.104 Sum_probs=140.4
Q ss_pred HhHHHHHHHHHHHcCChHHHHHHHhhCCCCCcccHHHHHHHhcchhhhccCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 009066 101 SVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLL 180 (545)
Q Consensus 101 ~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~ 180 (545)
+.+|+.|..++.+.+++.+|.+.|- ...|+..|..+|.+. .+.|.+++-+..+...++..-.|. .=+.++-
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyI--kA~Dps~y~eVi~~A-----~~~~~~edLv~yL~MaRk~~ke~~--IDteLi~ 124 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYI--KADDPSSYMEVVQAA-----NTSGNWEELVKYLQMARKKARESY--VETELIF 124 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSC--CCSCCCSSSHHHHHT-----TTSSCCTTHHHHHHTTSTTCCSTT--TTHHHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHHH--hCCChHHHHHHHHHH-----HhCCCHHHHHHHHHHHHHHhcccc--cHHHHHH
Confidence 4455666666666666666655442 234555566666666 666666666665554443322222 2234555
Q ss_pred HHhccCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhccC------------------------C
Q 009066 181 GCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR------------------------K 236 (545)
Q Consensus 181 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~------------------------~ 236 (545)
+|++.+++.+-+++. -.|+..-...+.+-+...|.++.|.-+|..+.. .
T Consensus 125 ayAk~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAn 197 (624)
T 3lvg_A 125 ALAKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKAN 197 (624)
T ss_dssp HHHTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCC
T ss_pred HHHhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 666666654433222 135555555666666666777766666665542 3
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHH
Q 009066 237 DVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMV 316 (545)
Q Consensus 237 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li 316 (545)
++.+|-.+-.+|...+.+.-|.-.--.+. +.||. ...++..|...|.+++-+.+++.-.. .-......++-|.
T Consensus 198 s~ktWKeV~~ACvd~~EfrLAqicGLniI---vhade--L~elv~~YE~~G~f~ELIsLlEaglg--lErAHmGmFTELa 270 (624)
T 3lvg_A 198 STRTWKEVCFACVDGKEFRLAQMCGLHIV---VHADE--LEELINYYQDRGYFEELITMLEAALG--LERAHMGMFTELA 270 (624)
T ss_dssp SSCSHHHHTHHHHHSCTTTTTTHHHHHHH---CCSSC--CSGGGSSSSTTCCCTTSTTTHHHHTT--STTCCHHHHHHHH
T ss_pred ChhHHHHHHHHHhCchHHHHHHHhcchhc---ccHHH--HHHHHHHHHhCCCHHHHHHHHHHHhC--CCchhHHHHHHHH
Confidence 67889999999999888877665544444 22222 22356667788888888888876552 2235567777787
Q ss_pred HHHhHcCCHHHHHHHHHhC----CCC------CCHhHHHHHHHHHHhcCCHHHHH
Q 009066 317 DLLGRAGKLVEAVDLIKKM----PFK------PQPAIFGTLLSACRVHKRLDLAE 361 (545)
Q Consensus 317 ~~~~~~g~~~~A~~~~~~m----~~~------p~~~~~~~li~~~~~~g~~~~A~ 361 (545)
-+|++= +.++-++-++-. .+. .....|.-++-.|.+..+++.|.
T Consensus 271 ILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 271 ILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 777764 444444444332 221 13456888888888888777665
No 231
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=94.56 E-value=1 Score=35.94 Aligned_cols=66 Identities=8% Similarity=-0.036 Sum_probs=38.3
Q ss_pred CCHhHHHHHHHHHHhcCCH---HHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchHHHHHHHHhhh
Q 009066 339 PQPAIFGTLLSACRVHKRL---DLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKE 404 (545)
Q Consensus 339 p~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 404 (545)
|+..+--.+..++.+..+. .+++.+++.+...+|.........|+-++.+.|++++|++..+.+.+
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 4444444445555554433 35666666666666643333566666667777777777777666655
No 232
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=93.86 E-value=0.16 Score=46.26 Aligned_cols=82 Identities=10% Similarity=0.150 Sum_probs=51.2
Q ss_pred HHHHHHHHHHhHHhcCCCCC---HHHHHHHHHHHhH-----cCCHHHHHHHHHhC-CCCCC--HhHHHHHHHHHHhc-CC
Q 009066 289 VDLGIQYFDSMVNDYGIAAK---PDHYTCMVDLLGR-----AGKLVEAVDLIKKM-PFKPQ--PAIFGTLLSACRVH-KR 356 (545)
Q Consensus 289 ~~~a~~~~~~~~~~~~~~~~---~~~~~~li~~~~~-----~g~~~~A~~~~~~m-~~~p~--~~~~~~li~~~~~~-g~ 356 (545)
...|...+++.++ +.|+ ...|..|...|.+ -|+.++|.+.|++. .+.|+ ..++......++.. |+
T Consensus 179 l~~A~a~lerAle---LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd 255 (301)
T 3u64_A 179 VHAAVMMLERACD---LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN 255 (301)
T ss_dssp HHHHHHHHHHHHH---HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHHHHH---hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC
Confidence 3444555555543 2444 4456666666766 37777777777766 44452 45566666666663 77
Q ss_pred HHHHHHHHHHHhcCCCC
Q 009066 357 LDLAEFAAMNLFNLNPA 373 (545)
Q Consensus 357 ~~~A~~~~~~~~~~~p~ 373 (545)
.++|.+.+++++...|.
T Consensus 256 ~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 256 RAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHHcCCCC
Confidence 77777777777777776
No 233
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=93.41 E-value=0.8 Score=48.10 Aligned_cols=55 Identities=13% Similarity=-0.014 Sum_probs=49.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchHHHHHHHHhh
Q 009066 348 LSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMK 403 (545)
Q Consensus 348 i~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 403 (545)
..-|...|+++.|+.+.+++...-|.... +|..|+.+|.+.|+|+.|+-.+..+-
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~-tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALDSFE-SWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSCHH-HHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCchhhH-HHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 34466789999999999999999999988 99999999999999999999998873
No 234
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=93.29 E-value=0.29 Score=37.08 Aligned_cols=58 Identities=14% Similarity=0.057 Sum_probs=31.2
Q ss_pred HHHHHHHccCcHHHHHHHHHHhHHhcC-----CCCCHHHHHHHHHHHhHcCCHHHHHHHHHhC
Q 009066 278 ALLLACNHAGLVDLGIQYFDSMVNDYG-----IAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335 (545)
Q Consensus 278 ~ll~a~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 335 (545)
.+...+...|+++.|...++...+... -.+....+..|..+|.+.|++++|...+++.
T Consensus 10 ~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~a 72 (104)
T 2v5f_A 10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKL 72 (104)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 444445555555555555555443220 1233455666666666666666666666655
No 235
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=92.62 E-value=10 Score=38.90 Aligned_cols=114 Identities=9% Similarity=0.001 Sum_probs=68.5
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHH----HHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHH
Q 009066 252 GKGEKALRLFDKMKDEGMKPDSITFV----ALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVE 327 (545)
Q Consensus 252 g~~~~A~~~~~~m~~~g~~p~~~t~~----~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 327 (545)
.+.+.|..+|....... ..+..... .+.......+...++...+...... .++.....-.+..-.+.|+.+.
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~~ 303 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRG 303 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHHH
Confidence 37789999998886543 22333222 2222333444244555566554432 3343334444455557899999
Q ss_pred HHHHHHhCCCCC-CHhH-HHHHHHHHHhcCCHHHHHHHHHHHhc
Q 009066 328 AVDLIKKMPFKP-QPAI-FGTLLSACRVHKRLDLAEFAAMNLFN 369 (545)
Q Consensus 328 A~~~~~~m~~~p-~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~ 369 (545)
|...|+.|+..+ +..- .-=+..++...|+.++|..+|+++.+
T Consensus 304 a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 304 LNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 999999995432 2222 23344567788999999999999875
No 236
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=92.44 E-value=0.89 Score=35.63 Aligned_cols=85 Identities=16% Similarity=0.013 Sum_probs=53.7
Q ss_pred HHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHH---HHHHHHhC-CCC-C--CHhHHHHHHHHHHhcCCHHHHHH
Q 009066 290 DLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVE---AVDLIKKM-PFK-P--QPAIFGTLLSACRVHKRLDLAEF 362 (545)
Q Consensus 290 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~---A~~~~~~m-~~~-p--~~~~~~~li~~~~~~g~~~~A~~ 362 (545)
..+.+.+...... + .++..+-..+.-++.+.....+ ++.++++. ... | .....-.|.-++.+.|++++|.+
T Consensus 18 ~~~~~~y~~e~~~-~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 18 LKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHH-S-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 3344444444332 2 2566666666666666665554 66666655 211 3 22344556678889999999999
Q ss_pred HHHHHhcCCCCCCc
Q 009066 363 AAMNLFNLNPANAA 376 (545)
Q Consensus 363 ~~~~~~~~~p~~~~ 376 (545)
.++.+++.+|++..
T Consensus 96 ~~~~lL~~eP~n~Q 109 (126)
T 1nzn_A 96 YVRGLLQTEPQNNQ 109 (126)
T ss_dssp HHHHHHHHCTTCHH
T ss_pred HHHHHHHhCCCCHH
Confidence 99999999998864
No 237
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=92.05 E-value=5.1 Score=34.09 Aligned_cols=180 Identities=9% Similarity=-0.038 Sum_probs=101.2
Q ss_pred HHHccCCCCChhhHHHHHHHHHcCCCCHHHHHHHHhcCCCCCeehHHHHHHHHHhCCCHHHHHHHHhhCCcCCHhHHHHH
Q 009066 28 ELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSVSWSAM 107 (545)
Q Consensus 28 ~~f~~~~~~~~~~~~~li~~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l 107 (545)
.+++.+..+|...-...+..+... +..+..-.+.+.+..+|...-...+.++.+.|+.+....+...+..++..+-...
T Consensus 18 ~~i~~L~~~~~~vr~~A~~~L~~~-~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~vr~~a 96 (201)
T 3ltj_A 18 MYIKNLQDDSYYVRRAAAYALGKI-GDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSA 96 (201)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHH-CCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHhc-CChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHH
Confidence 344445555555444445555554 4433333444444455555555566666666665555555555666777777788
Q ss_pred HHHHHHcCChHHHHHHHhhCCCCCcccHHHHHHHhcchhhhccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCc
Q 009066 108 ISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSS 187 (545)
Q Consensus 108 i~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~~ 187 (545)
+.++.+.|+.+....+.+.+..++...-...+.++ ...+. .+++..+..+.. .++...-...+.+....+.
T Consensus 97 ~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL-----~~~~~-~~~~~~L~~~l~---d~~~~vr~~A~~aL~~~~~ 167 (201)
T 3ltj_A 97 AVALGQIGDERAVEPLIKALKDEDWFVRIAAAFAL-----GEIGD-ERAVEPLIKALK---DEDGWVRQSAADALGEIGG 167 (201)
T ss_dssp HHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHH-----HHHTC-GGGHHHHHHHTT---CSSHHHHHHHHHHHHHHCS
T ss_pred HHHHHHhCcHHHHHHHHHHHcCCCHHHHHHHHHHH-----HHhCC-HHHHHHHHHHHc---CCCHHHHHHHHHHHHHhCc
Confidence 88888888765555555555556654444555555 33443 245555555554 3566666666777777766
Q ss_pred HHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcC
Q 009066 188 LQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCG 221 (545)
Q Consensus 188 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g 221 (545)
.+ +...+..+.+. ++..+-...+.+..+.+
T Consensus 168 ~~-~~~~L~~~l~d---~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 168 ER-VRAAMEKLAET---GTGFARKVAVNYLETHK 197 (201)
T ss_dssp HH-HHHHHHHHHHH---CCHHHHHHHHHHHHHCC
T ss_pred hh-HHHHHHHHHhC---CCHHHHHHHHHHHHHHH
Confidence 44 44444444432 34555555555555443
No 238
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=91.49 E-value=1.2 Score=35.02 Aligned_cols=46 Identities=11% Similarity=0.097 Sum_probs=24.2
Q ss_pred HHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchHHHHHHHHhhh
Q 009066 359 LAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKE 404 (545)
Q Consensus 359 ~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 404 (545)
+++.+++.+.+.+|......+..|+-++.+.|++++|++..+.+.+
T Consensus 61 ~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 61 LGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp HHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 4555555555555532222455555556666666666665555543
No 239
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=91.21 E-value=19 Score=38.84 Aligned_cols=251 Identities=12% Similarity=0.001 Sum_probs=118.7
Q ss_pred HHcCChHHHHHHHhhCCCCC-cccHHHHHHHhcchhhhccCChHHHHHHHHHHHhCCC--CCC---H-H---HHHHHHHH
Q 009066 112 IECGQLDKAVELFKVAPVKS-VVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGI--RPN---A-S---SLSSVLLG 181 (545)
Q Consensus 112 ~~~g~~~~A~~~f~~~~~~~-~~~~~~li~~~~~~g~~~~g~~~~A~~~~~~m~~~~~--~pd---~-~---t~~~ll~~ 181 (545)
...|+.+++..+++.....+ ...-..-..++.-.|.+..|..+++++++...+...- .-+ . . ....+..+
T Consensus 385 Ih~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla 464 (963)
T 4ady_A 385 IHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLA 464 (963)
T ss_dssp HTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHH
T ss_pred hccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHH
Confidence 34555566666665543311 1111111222222233666666677777766554210 000 1 1 11122223
Q ss_pred HhccCcHHHHHHHHHHHHhCCCCCCc--ccHHHHHHHHHhcCCHHHHHHHHHhccC-CChhh--HHHHHHHHHHcCChHH
Q 009066 182 CSHLSSLQLGKQVHQLVFKSPLCKDT--TALTPLISMYCKCGDLEDACKLFLEIQR-KDVVT--WNAMISGYAQHGKGEK 256 (545)
Q Consensus 182 ~~~~~~~~~a~~~~~~~~~~g~~~~~--~~~~~li~~y~~~g~~~~A~~~f~~~~~-~~~~~--~~~li~~~~~~g~~~~ 256 (545)
+...++-+ +...+..++...- +.. ...-+|...|.-.|+-+....++..+.+ .+... .-++.-++...|+.+.
T Consensus 465 ~~GS~~ee-v~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~ 542 (963)
T 4ady_A 465 AMGSANIE-VYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQEL 542 (963)
T ss_dssp STTCCCHH-HHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGG
T ss_pred hcCCCCHH-HHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHH
Confidence 33344433 3344444433211 101 1222344555566777777777765542 22222 2333344556788888
Q ss_pred HHHHHHHHHHcCCCCCHHHHH---HHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHH
Q 009066 257 ALRLFDKMKDEGMKPDSITFV---ALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIK 333 (545)
Q Consensus 257 A~~~~~~m~~~g~~p~~~t~~---~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 333 (545)
+..+.+.+... ..|. .-|. ++.-+|+..|+.....++++.+..+ ...++.-...+.-++...|+.+.+.++++
T Consensus 543 ~~~li~~L~~~-~dp~-vRygaa~alglAyaGTGn~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~v~rlv~ 618 (963)
T 4ady_A 543 ADDLITKMLAS-DESL-LRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTTVPRIVQ 618 (963)
T ss_dssp GHHHHHHHHHC-SCHH-HHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSSHHHHTT
T ss_pred HHHHHHHHHhC-CCHH-HHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHHHHHHHH
Confidence 88888888763 1222 2232 3345677889988877788877652 22333333333334444666666667766
Q ss_pred hCC--CCCCHhHHHHHHHHHHhcCCH-HHHHHHHHHHh
Q 009066 334 KMP--FKPQPAIFGTLLSACRVHKRL-DLAEFAAMNLF 368 (545)
Q Consensus 334 ~m~--~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~~~ 368 (545)
.+. ..|.+.--..+.-+....|+. .++...+..+.
T Consensus 619 ~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~ 656 (963)
T 4ady_A 619 LLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLT 656 (963)
T ss_dssp TGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence 542 223332222232333333333 35555665554
No 240
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=90.95 E-value=7 Score=33.52 Aligned_cols=186 Identities=8% Similarity=-0.047 Sum_probs=113.5
Q ss_pred hHHHHHHHccCCCCChhhHHHHHHHHHcCCCCHHHHHHHHhcCCCCCeehHHHHHHHHHhCCCHHHHHHHHhhCCcCCHh
Q 009066 23 LKDAQELFDKIPQPDVVSYNIMLSCILLNSDDVVAAFDFFQRLPIKDTASWNTMISGFVQKKNMAKARDLFLAMPEKNSV 102 (545)
Q Consensus 23 ~~~A~~~f~~~~~~~~~~~~~li~~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 102 (545)
.+....+.+.+..+|...-...+..+.+. |..+..-.+.+.+..+|...-...+.++.+.++.+....+...+..++..
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~-~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~ 96 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKI-GDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGW 96 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHH-CCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHH
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHh-CCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHH
Confidence 44444555556667666555555566665 55443444444455666666666777777777765555566666678888
Q ss_pred HHHHHHHHHHHcCChHHHHHHHhhCCCCCcccHHHHHHHhcchhhhccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 009066 103 SWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGC 182 (545)
Q Consensus 103 ~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~ 182 (545)
+-...+..+.+.|+.+....+.+.+..++...-...+.++ ...|.. +++..+.++.+ .+|...-...+.+.
T Consensus 97 vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL-----~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~~aL 167 (211)
T 3ltm_A 97 VRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFAL-----GEIGDE-RAVEPLIKALK---DEDGWVRQSAADAL 167 (211)
T ss_dssp HHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHH-----HHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHH-----HHcCCH-HHHHHHHHHHc---CCCHHHHHHHHHHH
Confidence 8888888888888866555566666666665555556666 444443 45666666654 45666667777777
Q ss_pred hccCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCC
Q 009066 183 SHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGD 222 (545)
Q Consensus 183 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 222 (545)
...+.. .+...+..+.+. ++..+-...+.++.+.+.
T Consensus 168 ~~~~~~-~~~~~L~~~l~d---~~~~vr~~A~~aL~~~~~ 203 (211)
T 3ltm_A 168 GEIGGE-RVRAAMEKLAET---GTGFARKVAVNYLETHKS 203 (211)
T ss_dssp HHHCSH-HHHHHHHHHHHH---CCHHHHHHHHHHHHC---
T ss_pred HHhCch-hHHHHHHHHHhC---CCHHHHHHHHHHHHhcCC
Confidence 777764 444555555543 345555555666555443
No 241
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=90.94 E-value=4.9 Score=31.76 Aligned_cols=140 Identities=13% Similarity=0.061 Sum_probs=86.4
Q ss_pred hccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHH
Q 009066 148 VENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDAC 227 (545)
Q Consensus 148 ~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 227 (545)
.-.|..++..++..+.... .+..-++-++.-....-+-+-..++++.+-+ ..|. ..||++....
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGk---iFDi----------s~C~NlKrVi 81 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGS---YFDL----------DKCQNLKSVV 81 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGG---GSCG----------GGCSCTHHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhh---hcCc----------HhhhcHHHHH
Confidence 3445566667777766653 2344444444443444444444444444432 2222 2356666666
Q ss_pred HHHHhccCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCC
Q 009066 228 KLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIA 306 (545)
Q Consensus 228 ~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 306 (545)
..|-.+.. +....+..+..+...|+-++-.+++..+.. +.+|+......+..||.+.|+..++.+++.+..++ |++
T Consensus 82 ~C~~~~n~-~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k-G~k 157 (172)
T 1wy6_A 82 ECGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKK-GEK 157 (172)
T ss_dssp HHHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCH
T ss_pred HHHHHhcc-hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh-hhH
Confidence 66655533 444556667778888888888888888644 35777788888888899999988888888888775 543
No 242
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=90.44 E-value=1.2 Score=35.88 Aligned_cols=54 Identities=6% Similarity=-0.090 Sum_probs=34.5
Q ss_pred CCHHHHHHHHHhC-CC-CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCc
Q 009066 323 GKLVEAVDLIKKM-PF-KPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAA 376 (545)
Q Consensus 323 g~~~~A~~~~~~m-~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 376 (545)
++.++|.++|+.+ .. +.=..+|-....--.++|+...|.+++.+.+++.|.+..
T Consensus 74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~ 129 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE 129 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH
Confidence 4445555555444 00 011556666666667788888888888888888887654
No 243
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=89.25 E-value=0.97 Score=36.48 Aligned_cols=100 Identities=8% Similarity=-0.003 Sum_probs=63.4
Q ss_pred CCHHHHHHHHHHHhHcCCH------HHHHHHHHhC--CCCCCH-hHHHHHHHH------HHhcCCHHHHHHHHHHHhcCC
Q 009066 307 AKPDHYTCMVDLLGRAGKL------VEAVDLIKKM--PFKPQP-AIFGTLLSA------CRVHKRLDLAEFAAMNLFNLN 371 (545)
Q Consensus 307 ~~~~~~~~li~~~~~~g~~------~~A~~~~~~m--~~~p~~-~~~~~li~~------~~~~g~~~~A~~~~~~~~~~~ 371 (545)
.|.++|-..++.+-+.|+. ++..++|++. .++|+. ..|...|.. +...+|.++|..+|+.++.+.
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 3455555555555555555 5555555544 222322 233332221 233489999999999998774
Q ss_pred CCCCchhHHHHHHHHHHcCCchHHHHHHHHhhhCCC
Q 009066 372 PANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNV 407 (545)
Q Consensus 372 p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 407 (545)
..-.- .+...+..-.+.|+...|++++.+....+.
T Consensus 91 KkFAK-iwi~~AqFEiRqgnl~kARkILg~AiG~~~ 125 (161)
T 4h7y_A 91 KKFAF-VHISFAQFELSQGNVKKSKQLLQKAVERGA 125 (161)
T ss_dssp TTBHH-HHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHH-HHHHHHHHHHHcccHHHHHHHHHHHhccCC
Confidence 44433 677777778899999999999999887654
No 244
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=88.57 E-value=4.3 Score=29.94 Aligned_cols=61 Identities=11% Similarity=0.110 Sum_probs=44.7
Q ss_pred HHHHHcCChHHHHHHHhhCCCCCcccHHHHHHHhcchhhhccCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 009066 109 SGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSS 177 (545)
Q Consensus 109 ~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ 177 (545)
..+...|++++|..+.+.+.-||..+|-+|-.. +.|..+++..-+.++...| .|....|..
T Consensus 48 sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~-------rlGl~s~le~rL~~la~sg-~p~~q~Fa~ 108 (116)
T 2p58_C 48 SSLMNRGDYASALQQGNKLAYPDLEPWLALCEY-------RLGLGSALESRLNRLARSQ-DPRIQTFVN 108 (116)
T ss_dssp HHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH-------HHTCHHHHHHHHHHHTTCC-CHHHHHHHH
T ss_pred HHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH-------hcccHHHHHHHHHHHHhCC-CHHHHHHHH
Confidence 456678999999999999888999998887664 4566677777777777766 554444443
No 245
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=88.39 E-value=4 Score=30.04 Aligned_cols=61 Identities=15% Similarity=0.185 Sum_probs=46.6
Q ss_pred HHHHHcCChHHHHHHHhhCCCCCcccHHHHHHHhcchhhhccCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 009066 109 SGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSS 177 (545)
Q Consensus 109 ~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ 177 (545)
..+...|++++|..+.+.+.-||..+|-++-.. +.|..+++..-+.++..+| .|....|..
T Consensus 47 sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~-------rlGl~s~le~rL~~la~sg-~p~~q~Fa~ 107 (115)
T 2uwj_G 47 SSLANQGRYQEALAFAHGNPWPALEPWFALCEW-------HLGLGAALDRRLAGLGGSS-DPALADFAA 107 (115)
T ss_dssp HHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHHH-------HTTCHHHHHHHHHHHHTCS-SHHHHHHHH
T ss_pred HHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH-------hcccHHHHHHHHHHHHhCC-CHHHHHHHH
Confidence 456678999999999999999999999888764 4677778877777887776 555555543
No 246
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=87.66 E-value=7.9 Score=40.67 Aligned_cols=123 Identities=13% Similarity=0.109 Sum_probs=77.2
Q ss_pred HHHHHHHhcCC-HHHHHHHHHhccCCChh--h--HHHHHHHHHHcC-ChHHHHHHHHHHHHc------CCCCCHH-----
Q 009066 212 PLISMYCKCGD-LEDACKLFLEIQRKDVV--T--WNAMISGYAQHG-KGEKALRLFDKMKDE------GMKPDSI----- 274 (545)
Q Consensus 212 ~li~~y~~~g~-~~~A~~~f~~~~~~~~~--~--~~~li~~~~~~g-~~~~A~~~~~~m~~~------g~~p~~~----- 274 (545)
+|+..+...|+ ++.|..+|+++.+.+.. + ...+|..+.+.+ +--+|+.++.+..+. ...+...
T Consensus 253 ~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~ 332 (754)
T 4gns_B 253 SLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARL 332 (754)
T ss_dssp HHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHH
T ss_pred HHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccc
Confidence 34444444566 57899999988764432 2 222333322222 233566666555421 1221111
Q ss_pred ------HHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhCC
Q 009066 275 ------TFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMP 336 (545)
Q Consensus 275 ------t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 336 (545)
....-...|...|+++-|+++-++.... .+.+-.+|..|+..|...|+++.|+-.++.+|
T Consensus 333 ~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 333 MNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred cCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 1111123466789999999999988763 34557899999999999999999999999986
No 247
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=87.36 E-value=19 Score=33.58 Aligned_cols=167 Identities=14% Similarity=0.166 Sum_probs=101.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHHcCChHHHHHHH----HHHHHcCCCCCHHHHHHHHHHHHcc
Q 009066 211 TPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLF----DKMKDEGMKPDSITFVALLLACNHA 286 (545)
Q Consensus 211 ~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~p~~~t~~~ll~a~~~~ 286 (545)
.++..=|.+.+++++|.+++..- ...+.++|+...|-++- +-..+.++++|..+...|+..+...
T Consensus 39 RTi~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~ 107 (336)
T 3lpz_A 39 RLVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLF 107 (336)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Confidence 34556688889999998876533 34456667766555544 4455567888888877777776654
Q ss_pred CcHHHH-HHHHHHhH---HhcC--CCCCHHHHHHHHHHHhHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHH
Q 009066 287 GLVDLG-IQYFDSMV---NDYG--IAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLA 360 (545)
Q Consensus 287 g~~~~a-~~~~~~~~---~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~A 360 (545)
..-+-. ..+.+.++ .++| ..-++.....+...|.+.|++.+|..-|- .+..+.+..+..++.-+...+...++
T Consensus 108 ~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i-lg~~~s~~~~a~mL~ew~~~~~~~e~ 186 (336)
T 3lpz_A 108 QPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV-LGTKESPEVLARMEYEWYKQDESHTA 186 (336)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT-TSCTTHHHHHHHHHHHHHHTSCGGGH
T ss_pred CCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH-hcCCchHHHHHHHHHHHHHhcCCccH
Confidence 431111 11222221 1123 34567888899999999999999998884 34334446666666555444432221
Q ss_pred HHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchHHHHHHHHhhh
Q 009066 361 EFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKE 404 (545)
Q Consensus 361 ~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 404 (545)
-. .....+--|...++...|..+++...+
T Consensus 187 dl---------------fiaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 187 PL---------------YCARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HH---------------HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HH---------------HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 11 222333456678899999888776654
No 248
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=87.21 E-value=25 Score=37.88 Aligned_cols=258 Identities=12% Similarity=0.051 Sum_probs=137.5
Q ss_pred HHhCCCHHHHHHHHhhCCc----CCH--hHHHHHHHHHHHcCChHHHHHHHhhCC-CCCc-----ccHHHHHHHhcchhh
Q 009066 80 FVQKKNMAKARDLFLAMPE----KNS--VSWSAMISGYIECGQLDKAVELFKVAP-VKSV-----VAWTAMISGYMKFGY 147 (545)
Q Consensus 80 ~~~~g~~~~a~~~~~~~~~----~~~--~~~~~li~~~~~~g~~~~A~~~f~~~~-~~~~-----~~~~~li~~~~~~g~ 147 (545)
....|+.++++.++..... .+. .....+.-+...+|.-+++..++.... ..+. ..-.....+..-.|.
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 4456777788888887764 222 233444455666777667777665432 2220 001111122222222
Q ss_pred hccCC-hHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHhccCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHH--HhcCC
Q 009066 148 VENSW-AEDGLKLLRMMIGLGIRPNA--SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLISMY--CKCGD 222 (545)
Q Consensus 148 ~~~g~-~~~A~~~~~~m~~~~~~pd~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y--~~~g~ 222 (545)
+-.|. -+++.+.+..+.... .+.. ..-.++...+...|+-+....++..+.+.. +..+...+..+. .-.|+
T Consensus 464 a~~GS~~eev~e~L~~~L~dd-~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~ 539 (963)
T 4ady_A 464 AAMGSANIEVYEALKEVLYND-SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGR 539 (963)
T ss_dssp HSTTCCCHHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTC
T ss_pred HhcCCCCHHHHHHHHHHHhcC-CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCC
Confidence 33332 246777777777532 1111 111223334567788888888888877642 233333344443 46788
Q ss_pred HHHHHHHHHhccC-CChh-hHH---HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHH
Q 009066 223 LEDACKLFLEIQR-KDVV-TWN---AMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFD 297 (545)
Q Consensus 223 ~~~A~~~f~~~~~-~~~~-~~~---~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 297 (545)
.+.+..+.+.+.. .|.. -|. ++.-+|+..|+......++..+... ...+......+.-++...|+.+.+.++++
T Consensus 540 ~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d-~~d~VRraAViaLGlI~~g~~e~v~rlv~ 618 (963)
T 4ady_A 540 QELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD-SNDDVRRAAVIALGFVLLRDYTTVPRIVQ 618 (963)
T ss_dssp GGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTSSSCSSHHHHTT
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC-CcHHHHHHHHHHHHhhccCCHHHHHHHHH
Confidence 8888888777753 3333 333 2345677788876666688888764 22222222222234444566666667766
Q ss_pred HhHHhcCCCCCHHHHHHHHHHHhHcCCH-HHHHHHHHhCCCCCCHhHH
Q 009066 298 SMVNDYGIAAKPDHYTCMVDLLGRAGKL-VEAVDLIKKMPFKPQPAIF 344 (545)
Q Consensus 298 ~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~p~~~~~ 344 (545)
.+.+ ...|.+..-.++.-+....|.. .+|.+++..+.-.+|..+-
T Consensus 619 ~L~~--~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~Vr 664 (963)
T 4ady_A 619 LLSK--SHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVR 664 (963)
T ss_dssp TGGG--CSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHHHH
T ss_pred HHHh--cCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCCCHHHH
Confidence 5544 2245555555555555545543 5677777776334454433
No 249
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=87.03 E-value=21 Score=34.17 Aligned_cols=128 Identities=10% Similarity=-0.025 Sum_probs=57.7
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHhC-CCCC---CcccHHHHHHHHHhcC-CHHHHHHHHHhccC---CChhhH---
Q 009066 173 SSLSSVLLGCSHLSSLQLGKQVHQLVFKS-PLCK---DTTALTPLISMYCKCG-DLEDACKLFLEIQR---KDVVTW--- 241 (545)
Q Consensus 173 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~~---~~~~~~~li~~y~~~g-~~~~A~~~f~~~~~---~~~~~~--- 241 (545)
.....+...|.+.|+.++..+++...... +.-+ .......|++.+.... ..+.-.++..+..+ .+-.+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~ 99 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666666554321 0000 1123344555555432 22222222222221 111222
Q ss_pred ---HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHHccCcHHHHHHHHHHhH
Q 009066 242 ---NAMISGYAQHGKGEKALRLFDKMKDEGMKPDS-----ITFVALLLACNHAGLVDLGIQYFDSMV 300 (545)
Q Consensus 242 ---~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~t~~~ll~a~~~~g~~~~a~~~~~~~~ 300 (545)
.-++..|...|++.+|..++.++.+.=-..|. ..+..-+..|...+++.++...+....
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~ 166 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSAR 166 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 13455666666666666666666542111111 123333445555666666666655543
No 250
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.39 E-value=20 Score=35.20 Aligned_cols=184 Identities=10% Similarity=0.074 Sum_probs=118.9
Q ss_pred cCChHHHHHHHHHHHhC-----CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhC-CCCCCcccHHHHHH----HHHh
Q 009066 150 NSWAEDGLKLLRMMIGL-----GIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKS-PLCKDTTALTPLIS----MYCK 219 (545)
Q Consensus 150 ~g~~~~A~~~~~~m~~~-----~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~----~y~~ 219 (545)
.|++++|++.+..+.+. +..........++..|...++++...+.+..+.+. |..+ .....+++ ....
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk--~ai~~~V~~~~~~l~~ 106 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLK--LSIQYMIQKVMEYLKS 106 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSH--HHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhH--HHHHHHHHHHHHHHhc
Confidence 47789999887766532 34456677888999999999999988877766543 3222 22233333 2222
Q ss_pred cCCHH--HHHHHHHhccC---CC-------hhhHHHHHHHHHHcCChHHHHHHHHHHHHc--CCCCC---HHHHHHHHHH
Q 009066 220 CGDLE--DACKLFLEIQR---KD-------VVTWNAMISGYAQHGKGEKALRLFDKMKDE--GMKPD---SITFVALLLA 282 (545)
Q Consensus 220 ~g~~~--~A~~~f~~~~~---~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~---~~t~~~ll~a 282 (545)
....+ .-..+.+.... .- ......|...|...|++.+|.+++.++... |..+. ...+...+..
T Consensus 107 ~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl 186 (445)
T 4b4t_P 107 SKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMEL 186 (445)
T ss_dssp HCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 33222 22333333321 10 123456778889999999999999998753 32222 1345566788
Q ss_pred HHccCcHHHHHHHHHHhHHh-cCCCCC----HHHHHHHHHHHhHcCCHHHHHHHHHhC
Q 009066 283 CNHAGLVDLGIQYFDSMVND-YGIAAK----PDHYTCMVDLLGRAGKLVEAVDLIKKM 335 (545)
Q Consensus 283 ~~~~g~~~~a~~~~~~~~~~-~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m 335 (545)
|...+++..|..++.++... ....+. ...|.+++..+...+++.+|.+.|.+.
T Consensus 187 ~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 187 SILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 99999999999999887432 112222 345678888888999999998877665
No 251
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=86.38 E-value=4.6 Score=33.22 Aligned_cols=116 Identities=4% Similarity=-0.030 Sum_probs=67.0
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHhcc-----CCCh-------hhHHHHHHHHHHcCChHHHHHHHHHHHHcC-CCCCHH-
Q 009066 209 ALTPLISMYCKCGDLEDACKLFLEIQ-----RKDV-------VTWNAMISGYAQHGKGEKALRLFDKMKDEG-MKPDSI- 274 (545)
Q Consensus 209 ~~~~li~~y~~~g~~~~A~~~f~~~~-----~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~- 274 (545)
.+-.-+..+...|.++.|+-+.+.+. .+++ .+...+..++...|++..|...|++.+... .-|...
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 33445677777888888887777643 2332 245666778888888888988888875421 111111
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhCCCC
Q 009066 275 TFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFK 338 (545)
Q Consensus 275 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 338 (545)
+...+- ....... .....++.+.---+..+|.+.|+.++|+.+++.+|.+
T Consensus 102 ~~~~~~----~~ss~p~----------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 102 VRPSTG----NSASTPQ----------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp -----------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred cccccc----ccCCCcc----------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 111110 0000000 0122344555556788888999999999999988543
No 252
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=84.94 E-value=4.6 Score=29.95 Aligned_cols=63 Identities=11% Similarity=0.202 Sum_probs=48.8
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHH
Q 009066 253 KGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVD 317 (545)
Q Consensus 253 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 317 (545)
+.-+..+-++.+....+.|+.....+.+.||.+.+++..|.++++.+..+.+.. ...|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~--~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPH--KEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC--TTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc--hhhHHHHHH
Confidence 344666667777777889999999999999999999999999998887654333 456766655
No 253
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.73 E-value=31 Score=33.73 Aligned_cols=181 Identities=12% Similarity=0.077 Sum_probs=111.4
Q ss_pred CChHHHHHHHhhCC-----CCCc----ccHHHHHHHhcchhhhccCChHHHHHHHHHHHhC-CCCCCHHHHHHHHHH---
Q 009066 115 GQLDKAVELFKVAP-----VKSV----VAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGL-GIRPNASSLSSVLLG--- 181 (545)
Q Consensus 115 g~~~~A~~~f~~~~-----~~~~----~~~~~li~~~~~~g~~~~g~~~~A~~~~~~m~~~-~~~pd~~t~~~ll~~--- 181 (545)
|+++.|.+.+-.+. ..|. .....++..| ...++++...+.+.-+.+. |..+.. ...++..
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~-----~~~~~~~~l~e~i~~Lskkr~qlk~a--i~~~V~~~~~ 102 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLL-----ASRNKWDDLNEQLTLLSKKHGQLKLS--IQYMIQKVME 102 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHH-----HHHSCHHHHHHHHHHHHTTTTTSHHH--HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHH-----HHhccHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHH
Confidence 77888887764432 2232 3466788888 8999999888877666543 333322 2333333
Q ss_pred -HhccCcHHHHHH--HHHHHHh--CCC-CC---CcccHHHHHHHHHhcCCHHHHHHHHHhccC----C-----ChhhHHH
Q 009066 182 -CSHLSSLQLGKQ--VHQLVFK--SPL-CK---DTTALTPLISMYCKCGDLEDACKLFLEIQR----K-----DVVTWNA 243 (545)
Q Consensus 182 -~~~~~~~~~a~~--~~~~~~~--~g~-~~---~~~~~~~li~~y~~~g~~~~A~~~f~~~~~----~-----~~~~~~~ 243 (545)
.......+.... +...... .|- -. .......|...|...|++.+|.+++.++.. . -+..+..
T Consensus 103 ~l~~~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~ 182 (445)
T 4b4t_P 103 YLKSSKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILE 182 (445)
T ss_dssp HHHHHCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHH
T ss_pred HHhcCCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 333333332211 1111111 110 00 112235688999999999999999998762 1 1346777
Q ss_pred HHHHHHHcCChHHHHHHHHHHHH----cCCCCCH--HHHHHHHHHHHccCcHHHHHHHHHHhHHh
Q 009066 244 MISGYAQHGKGEKALRLFDKMKD----EGMKPDS--ITFVALLLACNHAGLVDLGIQYFDSMVND 302 (545)
Q Consensus 244 li~~~~~~g~~~~A~~~~~~m~~----~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 302 (545)
.+..|...+++.+|..++++... ....|+. ..+...+..+...+++.+|.+.|..+...
T Consensus 183 q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 183 QMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 88899999999999999998753 2222322 23455566677888898888888777653
No 254
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=84.35 E-value=7.1 Score=28.81 Aligned_cols=86 Identities=15% Similarity=0.167 Sum_probs=55.4
Q ss_pred cHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 009066 187 SLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKD 266 (545)
Q Consensus 187 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 266 (545)
..++|..|-+.+...+. ...+--.-+..+...|++++|..+.+...-||...|-++-. .+.|..+++..-+.++..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 45566666555555542 22222223344567899999999999888899999987765 356777777777767766
Q ss_pred cCCCCCHHHHH
Q 009066 267 EGMKPDSITFV 277 (545)
Q Consensus 267 ~g~~p~~~t~~ 277 (545)
+| .|....|.
T Consensus 98 sg-~p~~q~Fa 107 (116)
T 2p58_C 98 SQ-DPRIQTFV 107 (116)
T ss_dssp CC-CHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 54 44444443
No 255
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=83.85 E-value=8.4 Score=37.04 Aligned_cols=70 Identities=13% Similarity=0.137 Sum_probs=46.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHhHH----hcCCCCCHHH
Q 009066 241 WNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN----DYGIAAKPDH 311 (545)
Q Consensus 241 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~ 311 (545)
...++..+...|++.+|+..++.+.... +-++..+..++.++...|+..+|.+.|+...+ +.|+.|++.+
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 3445666677777777777777776542 33666777777777777777777777766543 3466666655
No 256
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=83.70 E-value=2 Score=41.47 Aligned_cols=66 Identities=15% Similarity=0.024 Sum_probs=50.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchHHHHHHHHhhh-----CCCccCC
Q 009066 345 GTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKE-----NNVVKMP 411 (545)
Q Consensus 345 ~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~ 411 (545)
..++.++...|++++|...+..+...+|-+.. .|..|+.+|...|+..+|.+.|+...+ .|+.|.|
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~-~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~ 245 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEHPYREP-LWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGP 245 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH-HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 44566677788888888888888888888776 888888888888888888888877643 4666443
No 257
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=83.30 E-value=40 Score=37.66 Aligned_cols=79 Identities=13% Similarity=0.083 Sum_probs=45.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcc----CCCh----hhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 009066 210 LTPLISMYCKCGDLEDACKLFLEIQ----RKDV----VTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLL 281 (545)
Q Consensus 210 ~~~li~~y~~~g~~~~A~~~f~~~~----~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 281 (545)
|.-++..+-+.|.++.+.++-.... ..+. ..|..+..++...|++++|...+-.+-....+ ...+..|+.
T Consensus 902 Y~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--~~cLr~LV~ 979 (1139)
T 4fhn_B 902 YLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK--KSCLLDFVN 979 (1139)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--HHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--HHHHHHHHH
Confidence 3445555555555555544433221 1111 25777888888888888888888777654333 345556666
Q ss_pred HHHccCcHH
Q 009066 282 ACNHAGLVD 290 (545)
Q Consensus 282 a~~~~g~~~ 290 (545)
..+..|..+
T Consensus 980 ~lce~~~~~ 988 (1139)
T 4fhn_B 980 QLTKQGKIN 988 (1139)
T ss_dssp HHHHHCCHH
T ss_pred HHHhCCChh
Confidence 555555544
No 258
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=83.14 E-value=6.7 Score=28.89 Aligned_cols=86 Identities=15% Similarity=0.124 Sum_probs=56.3
Q ss_pred cHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 009066 187 SLQLGKQVHQLVFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKD 266 (545)
Q Consensus 187 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 266 (545)
..++|..|-+.+...+. ...+--.-+..+...|++++|..+.+...-||...|-++-. .+.|..+++..-+.++..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 45566666555555542 22222223345567899999999999888899999987765 467788888777777776
Q ss_pred cCCCCCHHHHH
Q 009066 267 EGMKPDSITFV 277 (545)
Q Consensus 267 ~g~~p~~~t~~ 277 (545)
+| .|....|.
T Consensus 97 sg-~p~~q~Fa 106 (115)
T 2uwj_G 97 SS-DPALADFA 106 (115)
T ss_dssp CS-SHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 65 44444443
No 259
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=82.99 E-value=30 Score=32.18 Aligned_cols=181 Identities=13% Similarity=0.063 Sum_probs=101.5
Q ss_pred HHHhCCCH---HHHHHHHhhCCcCCHhHHHHHHHHHHHcCChHHHHHHHhhCCCCCcccHHHHHHHhcchhhhccCChHH
Q 009066 79 GFVQKKNM---AKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAED 155 (545)
Q Consensus 79 ~~~~~g~~---~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~g~~~~ 155 (545)
.....|++ =+|.+.+ .++..=|.+.+++++|.+++-.- ...+ .+.|+...
T Consensus 21 ~~I~~G~y~~~YEAHQ~~-----------RTi~~Ry~~~k~y~eAidLL~~G-----------A~~l-----l~~~Q~~s 73 (336)
T 3lpz_A 21 RRIAEGQPEEQYEAAQET-----------RLVAARYSKQGNWAAAVDILASV-----------SQTL-----LRSGQGGS 73 (336)
T ss_dssp HHHHHCCHHHHHHHHHHH-----------HHHHHHHHHTTCHHHHHHHHHHH-----------HHHH-----HHTTCHHH
T ss_pred HHHhCCCCccccHHHHHH-----------HHHHHHHHhhcCHHHHHHHHHHH-----------HHHH-----HHCCCcch
Confidence 34455666 4555544 44666677888888888765331 1222 44455544
Q ss_pred HHHH----HHHHHhCCCCCCHHHHHHHHHHHhccCc--HHH---HHHHHHHHHhCC--CCCCcccHHHHHHHHHhcCCHH
Q 009066 156 GLKL----LRMMIGLGIRPNASSLSSVLLGCSHLSS--LQL---GKQVHQLVFKSP--LCKDTTALTPLISMYCKCGDLE 224 (545)
Q Consensus 156 A~~~----~~~m~~~~~~pd~~t~~~ll~~~~~~~~--~~~---a~~~~~~~~~~g--~~~~~~~~~~li~~y~~~g~~~ 224 (545)
|-++ .+-..+.++++|......++..+..... .+. ..+....-.+.| ..-|......+...|.+.+++.
T Consensus 74 g~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~ 153 (336)
T 3lpz_A 74 GGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFE 153 (336)
T ss_dssp HHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHH
Confidence 4443 3444456777777777777776655443 111 122222333333 2345677788999999999999
Q ss_pred HHHHHHHhccCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHhHH
Q 009066 225 DACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN 301 (545)
Q Consensus 225 ~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 301 (545)
+|+..|-.-.++.+..+..|+.-+...+...+ +|...-..++. |...+++..|..+++...+
T Consensus 154 ~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e--------------~dlfiaRaVL~-yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 154 AAEKHLVLGTKESPEVLARMEYEWYKQDESHT--------------APLYCARAVLP-YLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGG--------------HHHHHHHHHHH-HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHhcCCcc--------------HHHHHHHHHHH-HHHhCCHHHHHHHHHHHHH
Confidence 99998853222233566555555444443222 22222333443 4456788888887766554
No 260
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=82.62 E-value=35 Score=32.68 Aligned_cols=274 Identities=9% Similarity=0.006 Sum_probs=152.5
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHccCCC--------CChhhHHHHHHHHHcCCCCHHHHHHHHhcCC---CCCeehHH--
Q 009066 8 NWNSVLAGFAKQRGKLKDAQELFDKIPQ--------PDVVSYNIMLSCILLNSDDVVAAFDFFQRLP---IKDTASWN-- 74 (545)
Q Consensus 8 ~~~~li~~~~~~g~~~~~A~~~f~~~~~--------~~~~~~~~li~~~~~~~g~~~~A~~~~~~m~---~~d~~~~~-- 74 (545)
....|...|.+.|+ .++...++..... .....-..+|..+....+..+.-.++..+.. ..+..+|-
T Consensus 21 ~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~ 99 (394)
T 3txn_A 21 GILQQGELYKQEGK-AKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHTC-HHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34568899999999 9999998887753 2233466778877776566666666655544 12334452
Q ss_pred ----HHHHHHHhCCCHHHHHHHHhhCCc----CC-----HhHHHHHHHHHHHcCChHHHHHHHhhCCC------CCcccH
Q 009066 75 ----TMISGFVQKKNMAKARDLFLAMPE----KN-----SVSWSAMISGYIECGQLDKAVELFKVAPV------KSVVAW 135 (545)
Q Consensus 75 ----~li~~~~~~g~~~~a~~~~~~~~~----~~-----~~~~~~li~~~~~~g~~~~A~~~f~~~~~------~~~~~~ 135 (545)
.++..|...|++.+|.+++.++.. .| ..++..-+.+|...+++.++...+..... +++..
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i- 178 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV- 178 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH-
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH-
Confidence 578899999999999998888772 11 34677778899999999999988854321 11111
Q ss_pred HHHHHHhcchhhh-ccCChHHHHHHHHHHHhC---CCCC---CHHHHHHHHHHHhccCcHHHHHHHHH-H-HHhCCCCCC
Q 009066 136 TAMISGYMKFGYV-ENSWAEDGLKLLRMMIGL---GIRP---NASSLSSVLLGCSHLSSLQLGKQVHQ-L-VFKSPLCKD 206 (545)
Q Consensus 136 ~~li~~~~~~g~~-~~g~~~~A~~~~~~m~~~---~~~p---d~~t~~~ll~~~~~~~~~~~a~~~~~-~-~~~~g~~~~ 206 (545)
.+.+..+.-.-.. ..+++..|...|-+.... -..| +...|..+ .+.......+. ..+.. . .... ..|.
T Consensus 179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL-~aLl~~~r~el-~~~l~~~~~~~~-~~pe 255 (394)
T 3txn_A 179 QGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLL-CKIMLGQSDDV-NQLVSGKLAITY-SGRD 255 (394)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH-HHHHTTCGGGH-HHHHHSHHHHTT-CSHH
T ss_pred HHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHH-HHHHcCCHHHH-HHHhcccccccc-CCcc
Confidence 1222222111125 789999999888766421 0112 12233222 22222221122 22221 1 1221 2455
Q ss_pred cccHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcC----CCC-CHHHHHH
Q 009066 207 TTALTPLISMYCKCGDLEDACKLFLEIQR---KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEG----MKP-DSITFVA 278 (545)
Q Consensus 207 ~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~p-~~~t~~~ 278 (545)
...+..|+.+|. .+++.+...+++.... .|...... ...+++++...+ +.| ..+++..
T Consensus 256 i~~l~~L~~a~~-~~dl~~f~~iL~~~~~~l~~D~~l~~h-------------~~~L~~~Ir~~~L~~i~~pYsrIsl~~ 321 (394)
T 3txn_A 256 IDAMKSVAEASH-KRSLADFQAALKEYKKELAEDVIVQAH-------------LGTLYDTMLEQNLCRIIEPYSRVQVAH 321 (394)
T ss_dssp HHHHHHHHHHHH-TTCHHHHHHHHHHSTTTTTTSHHHHHH-------------HHHHHHHHHHHHHHHHHTTCSEEEHHH
T ss_pred HHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHhcChHHHHH-------------HHHHHHHHHHHHHHHHhHhhceeeHHH
Confidence 555566666654 5677776666665532 34432110 111122221111 122 3455666
Q ss_pred HHHHHHccCcHHHHHHHHHHhHHh
Q 009066 279 LLLACNHAGLVDLGIQYFDSMVND 302 (545)
Q Consensus 279 ll~a~~~~g~~~~a~~~~~~~~~~ 302 (545)
+...+.- ..+++...+.+|+..
T Consensus 322 iA~~l~l--s~~evE~~L~~lI~d 343 (394)
T 3txn_A 322 VAESIQL--PMPQVEKKLSQMILD 343 (394)
T ss_dssp HHHHHTC--CHHHHHHHHHHHHHT
T ss_pred HHHHHCc--CHHHHHHHHHHHHHC
Confidence 6655543 567888888777765
No 261
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=80.30 E-value=36 Score=31.33 Aligned_cols=181 Identities=9% Similarity=0.091 Sum_probs=106.8
Q ss_pred HHhCCCHHHHHHHHhhCCcCCHhHHHHHHHHHHHcCChHHHHHHHhhCCCCCcccHHHHHHHhcchhhhccCChHHHHHH
Q 009066 80 FVQKKNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKL 159 (545)
Q Consensus 80 ~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~g~~~~A~~~ 159 (545)
-...|++=+|.+.+ .++..=|.+.+++++|.+++... ...+ .+.|+...|-++
T Consensus 23 ~I~~G~yYEAhQ~~-----------Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~l-----l~~~Q~~sa~DL 75 (312)
T 2wpv_A 23 KIKAGDYYEAHQTL-----------RTIANRYVRSKSYEHAIELISQG-----------ALSF-----LKAKQGGSGTDL 75 (312)
T ss_dssp HHHHTCHHHHHHHH-----------HHHHHHHHHTTCHHHHHHHHHHH-----------HHHH-----HHTTCHHHHHHH
T ss_pred HhhccChHHHHHHH-----------HHHHHHHHHhcCHHHHHHHHHHH-----------HHHH-----HHCCCcchHHHH
Confidence 34456666666554 45677788888888888776431 1222 445555554443
Q ss_pred ----HHHHHhCCCCCCHHHHHHHHHHHhccC-----cHHHHHHHHHHHHhCCC--CCCcccHHHHHHHHHhcCCHHHHHH
Q 009066 160 ----LRMMIGLGIRPNASSLSSVLLGCSHLS-----SLQLGKQVHQLVFKSPL--CKDTTALTPLISMYCKCGDLEDACK 228 (545)
Q Consensus 160 ----~~~m~~~~~~pd~~t~~~ll~~~~~~~-----~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~y~~~g~~~~A~~ 228 (545)
.+-..+.++++|......++..+.... ..+-..+....-.+.|- .-++.....+...|.+.|++.+|+.
T Consensus 76 a~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~ 155 (312)
T 2wpv_A 76 IFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAER 155 (312)
T ss_dssp HHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHH
Confidence 444456677888877777777665432 22333334444444432 2366778889999999999999999
Q ss_pred HHHhccCCChhhHHHHHHHHHHc---CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHhHHh
Q 009066 229 LFLEIQRKDVVTWNAMISGYAQH---GKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVND 302 (545)
Q Consensus 229 ~f~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 302 (545)
.|-.-...|...+..|+.-+... |...++--. .-..++. |.-.|++..|..+++...+.
T Consensus 156 H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf--------------~~RaVL~-yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 156 YFMLGTHDSMIKYVDLLWDWLCQVDDIEDSTVAEF--------------FSRLVFN-YLFISNISFAHESKDIFLER 217 (312)
T ss_dssp HHHTSCHHHHHHHHHHHHHHHHHTTCCCHHHHHHH--------------HHHHHHH-HHHTTBHHHHHHHHHHHHHH
T ss_pred HHHhCCCccHHHHHHHHHHHHHhcCCCCcchHHHH--------------HHHHHHH-HHHhcCHHHHHHHHHHHHHH
Confidence 88633323455666555555444 444332211 1222332 34567888888888776543
No 262
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=80.23 E-value=9 Score=28.42 Aligned_cols=62 Identities=15% Similarity=0.248 Sum_probs=44.5
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhCCCCCCcccHHHHHH
Q 009066 153 AEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLIS 215 (545)
Q Consensus 153 ~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 215 (545)
.-+..+-++.+....+.|++....+.|.||.+.+++..|.++++-+...- .....+|..+++
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 34555666677777888999999999999999999999999988875432 222445655543
No 263
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=79.78 E-value=11 Score=29.73 Aligned_cols=71 Identities=13% Similarity=0.038 Sum_probs=45.9
Q ss_pred CCCHHHHHHHHHHHhHcCCH---HHHHHHHHhC-CCCC--CHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCc
Q 009066 306 AAKPDHYTCMVDLLGRAGKL---VEAVDLIKKM-PFKP--QPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAA 376 (545)
Q Consensus 306 ~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m-~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 376 (545)
.|++.+--.+.-++.+.... .+++.+++++ ...| ....+--|.-|+.+.|+++.|.+..+.+++.+|++..
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~Q 113 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 113 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHH
Confidence 45555555555556555543 3455555554 1123 2345666777888899999999999999999998864
No 264
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=78.36 E-value=39 Score=37.73 Aligned_cols=60 Identities=8% Similarity=-0.094 Sum_probs=26.0
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHhHHhcCCC-CC--HHHHHHHHHHHhHcCCHHHHHHHHHhC
Q 009066 276 FVALLLACNHAGLVDLGIQYFDSMVNDYGIA-AK--PDHYTCMVDLLGRAGKLVEAVDLIKKM 335 (545)
Q Consensus 276 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~-~~--~~~~~~li~~~~~~g~~~~A~~~~~~m 335 (545)
|..++..+.+.+.++.+.++-....+..+-. ++ ...|..+...+...|++++|...+-.+
T Consensus 902 Y~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~ 964 (1139)
T 4fhn_B 902 YLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVL 964 (1139)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhC
Confidence 4444444555555555554444333321101 00 113444555555555555555554444
No 265
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=77.82 E-value=31 Score=29.21 Aligned_cols=37 Identities=11% Similarity=0.027 Sum_probs=16.6
Q ss_pred hCCcCCHhHHHHHHHHHHHcCChHHHHHHHhhCCCCC
Q 009066 95 AMPEKNSVSWSAMISGYIECGQLDKAVELFKVAPVKS 131 (545)
Q Consensus 95 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~ 131 (545)
.+..++..+-...+..+.+.|..+....+.+.+..++
T Consensus 27 ~L~~~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~ 63 (211)
T 3ltm_A 27 NLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDED 63 (211)
T ss_dssp HTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSC
T ss_pred HHcCCCHHHHHHHHHHHHHhCCccHHHHHHHHHcCCC
Confidence 3334455555555555555555333333333333333
No 266
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=77.82 E-value=25 Score=28.03 Aligned_cols=71 Identities=13% Similarity=0.037 Sum_probs=48.3
Q ss_pred CCCHHHHHHHHHHHhHcCCHH---HHHHHHHhC-CCCC-C-HhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCc
Q 009066 306 AAKPDHYTCMVDLLGRAGKLV---EAVDLIKKM-PFKP-Q-PAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAA 376 (545)
Q Consensus 306 ~~~~~~~~~li~~~~~~g~~~---~A~~~~~~m-~~~p-~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 376 (545)
.|+..+-..+.-++.+....+ +++.+++++ ...| + ....--|.-++.+.|++++|.+..+.+++.+|++..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~Q 112 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 112 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHH
Confidence 456666666666666655433 455555555 1123 2 234455667899999999999999999999999864
No 267
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=77.18 E-value=8.4 Score=30.28 Aligned_cols=62 Identities=11% Similarity=0.225 Sum_probs=48.2
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHH
Q 009066 254 GEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVD 317 (545)
Q Consensus 254 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 317 (545)
.-+..+-++.+....+.|+.......|.+|.+.+++..|.++|+.++.+.+ +....|..+++
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~--~~~~iY~y~lq 130 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC--CchhhHHHHHH
Confidence 335566666677778899999999999999999999999999998876543 33556766655
No 268
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=76.24 E-value=34 Score=28.74 Aligned_cols=78 Identities=10% Similarity=0.053 Sum_probs=41.7
Q ss_pred CCcccHHHHHHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 009066 205 KDTTALTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACN 284 (545)
Q Consensus 205 ~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 284 (545)
++..+-...+.+..+.|+.+....+...+..++...-...+.++.+.|. .++...+.++... ++...-...+.+..
T Consensus 119 ~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-~~~~~~L~~~l~d---~~~~vr~~A~~aL~ 194 (201)
T 3ltj_A 119 EDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEKLAET---GTGFARKVAVNYLE 194 (201)
T ss_dssp SSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHHH---CCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHhC---CCHHHHHHHHHHHH
Confidence 4444555556666666654444444444445566666666666666654 4566666666543 34444444444444
Q ss_pred cc
Q 009066 285 HA 286 (545)
Q Consensus 285 ~~ 286 (545)
+.
T Consensus 195 ~l 196 (201)
T 3ltj_A 195 TH 196 (201)
T ss_dssp HC
T ss_pred HH
Confidence 43
No 269
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=76.01 E-value=13 Score=30.57 Aligned_cols=25 Identities=24% Similarity=0.267 Sum_probs=15.8
Q ss_pred hHHHHHHHHHHcCCchHHHHHHHHh
Q 009066 378 CYVQLANIYAAMKKWDDVARIRLSM 402 (545)
Q Consensus 378 ~~~~l~~~~~~~g~~~~a~~~~~~m 402 (545)
.-..+..+|.+.|++++|..+++.+
T Consensus 124 lkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 124 VKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 3445666666777777776666654
No 270
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=72.61 E-value=59 Score=29.90 Aligned_cols=168 Identities=13% Similarity=0.031 Sum_probs=101.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHHcCChHHHHHH----HHHHHHcCCCCCHHHHHHHHHHHHc
Q 009066 210 LTPLISMYCKCGDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKALRL----FDKMKDEGMKPDSITFVALLLACNH 285 (545)
Q Consensus 210 ~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~p~~~t~~~ll~a~~~ 285 (545)
+.++..=|.+.+++++|.+++..- ...+.++|+...|-++ .+-..+.+++++......++..+..
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~ 104 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAE 104 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 334566688888999998886533 3445667777666554 4445556888888888777776654
Q ss_pred cCcHH-HHHHHHHHhH---HhcC--CCCCHHHHHHHHHHHhHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhc---CC
Q 009066 286 AGLVD-LGIQYFDSMV---NDYG--IAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVH---KR 356 (545)
Q Consensus 286 ~g~~~-~a~~~~~~~~---~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~---g~ 356 (545)
-..-+ .=.++.+.++ .+.| ...++.....+...|.+.|++.+|..-|-- +...|...+..++.-+... |.
T Consensus 105 ~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~-~~~~s~~~~a~~l~~w~~~~~~~~ 183 (312)
T 2wpv_A 105 LDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFML-GTHDSMIKYVDLLWDWLCQVDDIE 183 (312)
T ss_dssp CCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHT-SCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred CCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHh-CCCccHHHHHHHHHHHHHhcCCCC
Confidence 32111 0112222222 1112 234788889999999999999999987763 2112455666665555444 54
Q ss_pred HHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchHHHHHHHHhhh
Q 009066 357 LDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKE 404 (545)
Q Consensus 357 ~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 404 (545)
..++-... ...+--|...|+...|..+++...+
T Consensus 184 ~~e~dlf~---------------~RaVL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 184 DSTVAEFF---------------SRLVFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HHHHHHHH---------------HHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred cchHHHHH---------------HHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 44432221 1222345577899999998887653
No 271
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=71.53 E-value=56 Score=29.21 Aligned_cols=53 Identities=11% Similarity=0.049 Sum_probs=29.8
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHhHH
Q 009066 248 YAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVN 301 (545)
Q Consensus 248 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 301 (545)
..+.|..++|++....-++.. +-|...-..++..+|-.|+++.|.+-++...+
T Consensus 7 ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~ 59 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK 59 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 445566666666666655542 22444444555666666666666666655543
No 272
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=70.50 E-value=14 Score=33.05 Aligned_cols=113 Identities=12% Similarity=0.176 Sum_probs=75.6
Q ss_pred HHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhC-CCCCCH----hHHHHHHHHHHhcC
Q 009066 281 LACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM-PFKPQP----AIFGTLLSACRVHK 355 (545)
Q Consensus 281 ~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~----~~~~~li~~~~~~g 355 (545)
....+.|.++++++....-++ .-+.|...-..|++.|+-.|+++.|.+-++.. ...|+. ..|..+|.+
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR--~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~a----- 77 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIK--ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA----- 77 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHH--TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH-----
T ss_pred HHHHhCCCHHHHHHHHHHHHH--hCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHH-----
Confidence 345678999999999888777 44778889999999999999999999887766 333443 345555533
Q ss_pred CHHHHHHHHHHHhc--CC---CCCCchhHHHHHHHH--HHcCCchHHHHHHHHhhhC
Q 009066 356 RLDLAEFAAMNLFN--LN---PANAAGCYVQLANIY--AAMKKWDDVARIRLSMKEN 405 (545)
Q Consensus 356 ~~~~A~~~~~~~~~--~~---p~~~~~~~~~l~~~~--~~~g~~~~a~~~~~~m~~~ 405 (545)
+..=.+++. .. +..+..-...|+.+. ...|+.++|.++.....+.
T Consensus 78 -----E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 78 -----AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp -----HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 333333333 11 222221233455544 4569999999999988653
No 273
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=67.94 E-value=24 Score=27.75 Aligned_cols=59 Identities=14% Similarity=0.270 Sum_probs=42.0
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhCCCCCCcccHHHHH
Q 009066 155 DGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTALTPLI 214 (545)
Q Consensus 155 ~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 214 (545)
+..+-++.+...++.|++......|.+|.+.+++..|.++++-+...- .+...+|..++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~l 129 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHH
Confidence 445556666667788888888999999999999998888888775532 22344555544
No 274
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=67.68 E-value=27 Score=34.00 Aligned_cols=96 Identities=9% Similarity=0.001 Sum_probs=64.7
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHhccC------CChhhHHHHHHHHHHcCChHHHHHHHHHHHH---cCCCCCHHHHH-
Q 009066 208 TALTPLISMYCKCGDLEDACKLFLEIQR------KDVVTWNAMISGYAQHGKGEKALRLFDKMKD---EGMKPDSITFV- 277 (545)
Q Consensus 208 ~~~~~li~~y~~~g~~~~A~~~f~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~p~~~t~~- 277 (545)
.+...+.+.|.++|+++.|.+.|.++.. .-+..+-..|..+...+++..+...+.+... .+..|+...-.
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 3667788999999999999999988864 2345677778888888999999888888754 22233322111
Q ss_pred -HHHHHHHccCcHHHHHHHHHHhHHhc
Q 009066 278 -ALLLACNHAGLVDLGIQYFDSMVNDY 303 (545)
Q Consensus 278 -~ll~a~~~~g~~~~a~~~~~~~~~~~ 303 (545)
.-...+...+++..|.+.|-.....+
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhccC
Confidence 11112345678888888777765543
No 275
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=67.32 E-value=60 Score=29.88 Aligned_cols=59 Identities=14% Similarity=0.180 Sum_probs=43.6
Q ss_pred HHhCCCCCCH--hHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchHHHHHHHHhhhC
Q 009066 332 IKKMPFKPQP--AIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKEN 405 (545)
Q Consensus 332 ~~~m~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 405 (545)
|-..+++|.. .+..+-++...+++++..|..+.++++++.|... ..++|.++...-.+.
T Consensus 196 FT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~---------------~a~qArkil~~ce~~ 256 (325)
T 3mv2_A 196 FTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGP---------------RAEQARKIKNKADSM 256 (325)
T ss_dssp GGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSH---------------HHHHHHHHHHHHHTS
T ss_pred hccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH---------------HHHHHHHHHHHHhcC
Confidence 3333555543 4677788889999999999999999999999653 345677777766544
No 276
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=64.45 E-value=36 Score=28.78 Aligned_cols=69 Identities=16% Similarity=0.109 Sum_probs=47.5
Q ss_pred ccHHHHHHHhcchhhhccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCc-----HHHHHHHHHHHHhCCCC
Q 009066 133 VAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLSS-----LQLGKQVHQLVFKSPLC 204 (545)
Q Consensus 133 ~~~~~li~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~~-----~~~a~~~~~~~~~~g~~ 204 (545)
...-.+|+++.|. ++..+++.|+-.+.+|++.| .|....-..++.+....|. +..|...++.....|.+
T Consensus 12 d~HYd~iSAf~KS--iRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 85 (204)
T 2r9g_A 12 DAHYDVISAFQKS--IRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLP 85 (204)
T ss_dssp CCHHHHHHHHHHH--HHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHHHHHHHH--HhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 3444566666554 78899999999999999999 7776666666666655543 44555555555666643
No 277
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=61.00 E-value=58 Score=28.71 Aligned_cols=21 Identities=10% Similarity=0.204 Sum_probs=10.9
Q ss_pred HHHHHHHcCChHHHHHHHhhC
Q 009066 107 MISGYIECGQLDKAVELFKVA 127 (545)
Q Consensus 107 li~~~~~~g~~~~A~~~f~~~ 127 (545)
.+...++.|+++....+++.-
T Consensus 8 ~L~~A~~~g~~~~v~~Ll~~g 28 (285)
T 1wdy_A 8 LLIKAVQNEDVDLVQQLLEGG 28 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHcC
Confidence 344445555555555555543
No 278
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=58.68 E-value=95 Score=27.24 Aligned_cols=206 Identities=10% Similarity=0.021 Sum_probs=99.3
Q ss_pred HHHHHHHHhCCCChHHHHHHHccCCCCCh----hhHHHHHHHHHcCCCCHHHHHHHHhcCCCC---CeehHHHHHHHHHh
Q 009066 10 NSVLAGFAKQRGKLKDAQELFDKIPQPDV----VSYNIMLSCILLNSDDVVAAFDFFQRLPIK---DTASWNTMISGFVQ 82 (545)
Q Consensus 10 ~~li~~~~~~g~~~~~A~~~f~~~~~~~~----~~~~~li~~~~~~~g~~~~A~~~~~~m~~~---d~~~~~~li~~~~~ 82 (545)
++.+...++.|+ ++....+++.-..++. .-++.+. ..+.. |+.+-+..+++.-..+ |...++. +...+.
T Consensus 6 ~~~L~~A~~~g~-~~~v~~Ll~~g~~~~~~~~~~g~t~L~-~A~~~-g~~~~v~~Ll~~g~~~~~~~~~g~t~-L~~A~~ 81 (285)
T 1wdy_A 6 NHLLIKAVQNED-VDLVQQLLEGGANVNFQEEEGGWTPLH-NAVQM-SREDIVELLLRHGADPVLRKKNGATP-FLLAAI 81 (285)
T ss_dssp HHHHHHHHHTTC-HHHHHHHHHTTCCTTCCCTTTCCCHHH-HHHHT-TCHHHHHHHHHTTCCTTCCCTTCCCH-HHHHHH
T ss_pred chHHHHHHHcCC-HHHHHHHHHcCCCcccccCCCCCcHHH-HHHHc-CCHHHHHHHHHcCCCCcccCCCCCCH-HHHHHH
Confidence 445566677788 8888888876554322 2233343 33556 7877777777654322 2222233 333445
Q ss_pred CCCHHHHHHHHhhCCcCC---HhHHHHHHHHHHHcCChHHHHHHHhhCCCCCcc-------------cHHHHHHHhcchh
Q 009066 83 KKNMAKARDLFLAMPEKN---SVSWSAMISGYIECGQLDKAVELFKVAPVKSVV-------------AWTAMISGYMKFG 146 (545)
Q Consensus 83 ~g~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~-------------~~~~li~~~~~~g 146 (545)
.|+.+-+..+++.-...+ ..- .+.+...+..|+.+-...+++.....+.. .++.+..+
T Consensus 82 ~~~~~~v~~Ll~~g~~~~~~~~~g-~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A----- 155 (285)
T 1wdy_A 82 AGSVKLLKLFLSKGADVNECDFYG-FTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDA----- 155 (285)
T ss_dssp HTCHHHHHHHHHTTCCTTCBCTTC-CBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHH-----
T ss_pred cCCHHHHHHHHHcCCCCCccCccc-CCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHH-----
Confidence 677766666665433221 111 12344455677777777676654432221 22233333
Q ss_pred hhccCChHHHHHHHHHHHhC-CCCCCH---HHHHHHHHHHhccCcHHHHHHHHHHHHhCCCCCCccc--HHHHHHHHHhc
Q 009066 147 YVENSWAEDGLKLLRMMIGL-GIRPNA---SSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTA--LTPLISMYCKC 220 (545)
Q Consensus 147 ~~~~g~~~~A~~~~~~m~~~-~~~pd~---~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~y~~~ 220 (545)
+..|+.+ +++.+.+. |..++. ...+.+.. .+..++.....++.+.+.+.|..++... ..+.+...++.
T Consensus 156 -~~~~~~~----~v~~Ll~~~~~~~~~~~~~g~t~l~~-a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 229 (285)
T 1wdy_A 156 -AEKGHVE----VLKILLDEMGADVNACDNMGRNALIH-ALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEK 229 (285)
T ss_dssp -HHHTCHH----HHHHHHHTSCCCTTCCCTTSCCHHHH-HHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHT
T ss_pred -HHcCCHH----HHHHHHHhcCCCCCccCCCCCCHHHH-HHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHc
Confidence 3344433 33333333 333321 11222222 2233443344555666666665544321 22344445556
Q ss_pred CCHHHHHHHHH
Q 009066 221 GDLEDACKLFL 231 (545)
Q Consensus 221 g~~~~A~~~f~ 231 (545)
|+.+-+..+++
T Consensus 230 ~~~~~v~~Ll~ 240 (285)
T 1wdy_A 230 KHLGLVQRLLE 240 (285)
T ss_dssp TCHHHHHHHHH
T ss_pred CCHHHHHHHHh
Confidence 66666655555
No 279
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=58.00 E-value=81 Score=30.53 Aligned_cols=96 Identities=10% Similarity=0.008 Sum_probs=69.3
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHH----
Q 009066 240 TWNAMISGYAQHGKGEKALRLFDKMKDEGMKP--DSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYT---- 313 (545)
Q Consensus 240 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~---- 313 (545)
++..+..-|.+.|++++|.+.|.++...-..+ -...+..++..+...+++..+.....++.....-.++....+
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 67788999999999999999999998743333 335677788899999999999999988765333233333222
Q ss_pred HHHHHHhHcCCHHHHHHHHHhC
Q 009066 314 CMVDLLGRAGKLVEAVDLIKKM 335 (545)
Q Consensus 314 ~li~~~~~~g~~~~A~~~~~~m 335 (545)
+-+-.+...+++.+|...|-+.
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~ 234 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDS 234 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHH
Confidence 2223345678899998887665
No 280
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=56.38 E-value=90 Score=32.19 Aligned_cols=17 Identities=12% Similarity=0.173 Sum_probs=13.9
Q ss_pred HHHcCCchHHHHHHHHh
Q 009066 386 YAAMKKWDDVARIRLSM 402 (545)
Q Consensus 386 ~~~~g~~~~a~~~~~~m 402 (545)
+.+.|+|++|.+.++++
T Consensus 548 ~~~~g~~~~AL~~i~~L 564 (661)
T 2qx5_A 548 LYFNKQWQETLSQMELL 564 (661)
T ss_dssp HHHTTCHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHhC
Confidence 37889999998877765
No 281
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=55.18 E-value=1.6e+02 Score=29.28 Aligned_cols=180 Identities=9% Similarity=0.069 Sum_probs=94.7
Q ss_pred cccHHHHHHHHHhcCCHHHHHHHHHhccCCCh-hhHHH-------HHHHHHHcCChHHHHHHHHHHHHcCCCCCHH----
Q 009066 207 TTALTPLISMYCKCGDLEDACKLFLEIQRKDV-VTWNA-------MISGYAQHGKGEKALRLFDKMKDEGMKPDSI---- 274 (545)
Q Consensus 207 ~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~-~~~~~-------li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---- 274 (545)
..++|.++..|...+.++.|..+..+..-|.. .+-+. +...+.-.+++.+|.+.+......-. ++..
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap-~~~~a~gf 309 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAP-HNSKSLGF 309 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCS-CSSSCSHH
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-cchhhhhH
Confidence 45778889999999999999999998876532 22222 23445668899999999888775422 2211
Q ss_pred ---H--HHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhCCCCCCHhHHHHHHH
Q 009066 275 ---T--FVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLS 349 (545)
Q Consensus 275 ---t--~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~ 349 (545)
. |..++..+ .|.+.. ..+| ..++.......|..|+.++ +.|++++-...+++-. .
T Consensus 310 r~~a~K~lI~V~LL--lG~iP~-r~lf----~q~~l~~~L~pY~~Lv~Av-r~GdL~~F~~~L~~h~------------~ 369 (523)
T 4b4t_S 310 LQQSNKLHCCIQLL--MGDIPE-LSFF----HQSNMQKSLLPYYHLTKAV-KLGDLKKFTSTITKYK------------Q 369 (523)
T ss_dssp HHHHHHHHHHHHHH--HTCCCC-HHHH----TTTSCHHHHHHHHHHHHHH-HHTCHHHHHHHHHHTH------------H
T ss_pred HHHHHHHHHhHHhh--cCCCCC-hHHh----hchhHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHhc------------c
Confidence 1 12222222 233222 1222 1112222244577777776 6688777666555431 1
Q ss_pred HHHhcCCHHHHHHHHHHH-----hcCCCCCCchhHHHHHHHHHHcCCchHHHHHHHHhhhCCCc
Q 009066 350 ACRVHKRLDLAEFAAMNL-----FNLNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVV 408 (545)
Q Consensus 350 ~~~~~g~~~~A~~~~~~~-----~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 408 (545)
.+.+.|.+...+++-..+ ..+..........-++... .....++|..+...|...|.-
T Consensus 370 ~F~~Dgty~LI~rLr~~vir~~irkis~~YsrIsL~dIa~kL-~L~s~eeaE~iVAkmI~dG~I 432 (523)
T 4b4t_S 370 LLLKDDTYQLCVRLRSNVIKTGIRIISLTYKKISLRDICLKL-NLDSEQTVEYMVSRAIRDGVI 432 (523)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHHSCCCSSEECHHHHHHHH-HHHHSSCHHHHHHHHHHHTSS
T ss_pred eeccCChhHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHh-CCCCHHHHHHHHHHHHHcCCc
Confidence 223344444333322222 1222222111222222222 112346788889889887754
No 282
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=54.57 E-value=99 Score=26.22 Aligned_cols=103 Identities=15% Similarity=0.213 Sum_probs=68.2
Q ss_pred HHHHHHHHhC-CCCCCHh---HHHHHHHHHHhcCCHHHHHHHHHHHhc--CCCCCCchhHHHHHHHHHHcCCchHHHHHH
Q 009066 326 VEAVDLIKKM-PFKPQPA---IFGTLLSACRVHKRLDLAEFAAMNLFN--LNPANAAGCYVQLANIYAAMKKWDDVARIR 399 (545)
Q Consensus 326 ~~A~~~~~~m-~~~p~~~---~~~~li~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~ 399 (545)
+.+.+.|... ..+.|.. .|-..+..+ ..++...+..+|..|.. ++-..+. .|...+..+...|++.+|.+++
T Consensus 61 Erc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~Al-fYe~wA~~lE~~g~~~~A~~Vy 138 (202)
T 3esl_A 61 ERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSL-FYEEFSKLLENAQFFLEAKVLL 138 (202)
T ss_dssp HHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHH-HHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHH-HHHHHHHHHHHcCCHHHHHHHH
Confidence 3444445444 3344553 444444443 24456788888888865 5555555 7889999999999999999999
Q ss_pred HHhhhCCCccCCceeEEEECCEEEEEecCCCCCCChHHHHHHHHHHHHHHHHcCcc
Q 009066 400 LSMKENNVVKMPGYSWIEVGTVVHEFRSGDRVHPELVSIHEKLKELEKRMKLAGYV 455 (545)
Q Consensus 400 ~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~m~~~g~~ 455 (545)
+.-.+++-.| .+.+.....+...+|...+++
T Consensus 139 ~~GI~~~A~P-------------------------~~rL~~~~~~F~~R~~~~~~~ 169 (202)
T 3esl_A 139 ELGAENNCRP-------------------------YNRLLRSLSNYEDRLREMNIV 169 (202)
T ss_dssp HHHHHTTCBS-------------------------HHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHcCCcc-------------------------HHHHHHHHHHHHHHHHhcCCC
Confidence 9888876553 223444556677778777763
No 283
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=54.30 E-value=1.2e+02 Score=26.92 Aligned_cols=18 Identities=11% Similarity=-0.141 Sum_probs=7.8
Q ss_pred cCCHhHHHHHHHHHHHcC
Q 009066 98 EKNSVSWSAMISGYIECG 115 (545)
Q Consensus 98 ~~~~~~~~~li~~~~~~g 115 (545)
.++..+-...+.++.+.|
T Consensus 65 d~~~~vR~~A~~aL~~l~ 82 (280)
T 1oyz_A 65 DKNYIRRDIGAFILGQIK 82 (280)
T ss_dssp CSSHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHHHHHHHhc
Confidence 344444444444444444
No 284
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=53.26 E-value=1.5e+02 Score=27.84 Aligned_cols=70 Identities=9% Similarity=0.088 Sum_probs=38.9
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHhhCCcCC--HhHHHHHHHHHHHcCC--hHHHHHHHhhCCCCCcccHHHHHHHh
Q 009066 72 SWNTMISGFVQKKNMAKARDLFLAMPEKN--SVSWSAMISGYIECGQ--LDKAVELFKVAPVKSVVAWTAMISGY 142 (545)
Q Consensus 72 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~li~~~~~~g~--~~~A~~~f~~~~~~~~~~~~~li~~~ 142 (545)
....+|.-|...++.++|...++++..|. ...-..++..-...++ -+.+-.++..+. .++.+-..+..++
T Consensus 56 ~~~~ii~EYf~~~d~~Ea~~~l~eL~~p~~~~~~v~~~I~~aLdr~~~erE~~s~LLs~L~-~~~ls~~~i~~gf 129 (358)
T 3eiq_C 56 TLTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLC-GTVMSTNDVEKSF 129 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTTCCGGGGGHHHHHHHHHTTSCHHHHHHHHHHHHTTT-TTSCCHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhCCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH-hCCCCHHHHHHHH
Confidence 35566777777778888888777776443 2233333333332222 233445555555 3666666666665
No 285
>2l0z_A Glycoprotein G2; zinc-binding domain, virus envelope glycoprotein, GPC, junin arenavirus, viral protein; NMR {Junin virus}
Probab=52.67 E-value=4.7 Score=23.80 Aligned_cols=10 Identities=50% Similarity=1.308 Sum_probs=8.5
Q ss_pred cCCcCCCCCC
Q 009066 535 KDGTCSCGDY 544 (545)
Q Consensus 535 ~~g~~~~~~~ 544 (545)
.+|.|||+-|
T Consensus 20 ~~~~C~CG~y 29 (42)
T 2l0z_A 20 SLGGCRCGKY 29 (42)
T ss_dssp TTSSBTTTTB
T ss_pred CCceeccccc
Confidence 5899999976
No 286
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=52.42 E-value=59 Score=27.72 Aligned_cols=72 Identities=15% Similarity=0.171 Sum_probs=48.6
Q ss_pred CcccHHHHHHHhcchhhhccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC-----cHHHHHHHHHHHHhCCCC
Q 009066 131 SVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLS-----SLQLGKQVHQLVFKSPLC 204 (545)
Q Consensus 131 ~~~~~~~li~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~-----~~~~a~~~~~~~~~~g~~ 204 (545)
+-...-.+|+++.|. ++..+++.|+-.+.+|++.|-.|....-..++.+....| .+..|...++.....|.+
T Consensus 31 ~Gd~HYd~ISAf~KS--iRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 107 (213)
T 3ctd_A 31 NGQNHFDVISAFIKS--IRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFP 107 (213)
T ss_dssp ---CHHHHHHHHHHH--HHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTT
T ss_pred CchHHHHHHHHHHHH--HhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 334555667777655 788999999999999999998887776666666655444 244555555555555543
No 287
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=52.23 E-value=45 Score=28.14 Aligned_cols=49 Identities=16% Similarity=0.144 Sum_probs=36.1
Q ss_pred HHHHHHhcchhhhccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC
Q 009066 136 TAMISGYMKFGYVENSWAEDGLKLLRMMIGLGIRPNASSLSSVLLGCSHLS 186 (545)
Q Consensus 136 ~~li~~~~~~g~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~ 186 (545)
-.+|+++.|. ++..+++.|+-.+.+|++.|-.|....-..++.+....|
T Consensus 8 Yd~ISAf~KS--iRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 8 YDLISALHKS--VRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HHHHHHHHHH--HHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHH--HhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 3456666554 788999999999999999997777666666666654443
No 288
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=51.61 E-value=68 Score=24.93 Aligned_cols=62 Identities=16% Similarity=0.228 Sum_probs=38.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhccCCC---hhhHHHHHHHHHHcCC--hHHHHHHHHHHHHcCCCCC
Q 009066 211 TPLISMYCKCGDLEDACKLFLEIQRKD---VVTWNAMISGYAQHGK--GEKALRLFDKMKDEGMKPD 272 (545)
Q Consensus 211 ~~li~~y~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~ 272 (545)
..++.=|...|+.++|.+.++++..|. ......+..++-+.+. .+.+..++..+...|+-+.
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~ 77 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 77 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 457777888888888888888887552 2233444444444332 3456667777766665443
No 289
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=50.84 E-value=2.2e+02 Score=29.08 Aligned_cols=364 Identities=9% Similarity=0.049 Sum_probs=189.5
Q ss_pred HHHHHHHHHhCCCChHHHHHHHccCCC-C--ChhhHHHHHHHHHcCCCCHHHHHHHHhcCC-CCCe-ehHHHHHHHHHhC
Q 009066 9 WNSVLAGFAKQRGKLKDAQELFDKIPQ-P--DVVSYNIMLSCILLNSDDVVAAFDFFQRLP-IKDT-ASWNTMISGFVQK 83 (545)
Q Consensus 9 ~~~li~~~~~~g~~~~~A~~~f~~~~~-~--~~~~~~~li~~~~~~~g~~~~A~~~~~~m~-~~d~-~~~~~li~~~~~~ 83 (545)
|.....+ .+.|+ +..+..+-..+.. | .-..|..+.... .. ...++...++.+-+ .|-. ..-+.-+..+++.
T Consensus 10 ~~~a~~a-~~~~~-~~~~~~l~~~l~~~pL~~yl~y~~l~~~l-~~-~~~~ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~ 85 (618)
T 1qsa_A 10 YAQIKQA-WDNRQ-MDVVEQMMPGLKDYPLYPYLEYRQITDDL-MN-QPAVTVTNFVRANPTLPPARTLQSRFVNELARR 85 (618)
T ss_dssp HHHHHHH-HHTTC-HHHHHHHSGGGTTSTTHHHHHHHHHHHTG-GG-CCHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHH-HHCCC-HHHHHHHHHhhcCCCcHHHHHHHHHHhCc-cc-CCHHHHHHHHHHCCCChhHHHHHHHHHHHHHhC
Confidence 3334443 34467 8888888877753 2 122455544432 22 36777777777765 1211 2223445667788
Q ss_pred CCHHHHHHHHhhCCcCCHhHHHHHHHHHHHcCChHHHHHHHhhCC---CCCcccHHHHHHHhcchhhhccCChHH--HHH
Q 009066 84 KNMAKARDLFLAMPEKNSVSWSAMISGYIECGQLDKAVELFKVAP---VKSVVAWTAMISGYMKFGYVENSWAED--GLK 158 (545)
Q Consensus 84 g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~g~~~~--A~~ 158 (545)
+++...+..+.. ...+...-.....+....|+-++|......+- .......+.++..+ .+.|.... ...
T Consensus 86 ~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~-----~~~g~lt~~~~~~ 159 (618)
T 1qsa_A 86 EDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVW-----RASGKQDPLAYLE 159 (618)
T ss_dssp TCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHH-----HHTTCSCHHHHHH
T ss_pred CCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHH-----HHCCCCCHHHHHH
Confidence 999988887776 45566677777888888899766665544322 23455677777777 44343322 222
Q ss_pred HHHHHHhCC-----------CCCCHHHHH-HHHHHHhccCcHHHHHHHHHHHHhCCCCCCcc---cHHHHHHHHHhcCCH
Q 009066 159 LLRMMIGLG-----------IRPNASSLS-SVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTT---ALTPLISMYCKCGDL 223 (545)
Q Consensus 159 ~~~~m~~~~-----------~~pd~~t~~-~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~---~~~~li~~y~~~g~~ 223 (545)
=++.+...| +.++...+. .++.....-..+ .... ... .++.. .+..-+.-+.+ .+.
T Consensus 160 R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~---~~~~---~~~--~~~~~~~~~~~~~~~rlar-~d~ 230 (618)
T 1qsa_A 160 RIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTV---LTFA---RTT--GATDFTRQMAAVAFASVAR-QDA 230 (618)
T ss_dssp HHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGH---HHHH---HHS--CCCHHHHHHHHHHHHHHHH-HCH
T ss_pred HHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhH---HHHH---hcc--CCChhhHHHHHHHHHHHHh-cCH
Confidence 222222222 112221111 111111111111 1111 111 12211 11112223333 378
Q ss_pred HHHHHHHHhccC---CChh----hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHH
Q 009066 224 EDACKLFLEIQR---KDVV----TWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGLVDLGIQYF 296 (545)
Q Consensus 224 ~~A~~~f~~~~~---~~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 296 (545)
+.|...|....+ -+.. .+..+...+...+...++...+....... ++.....-.+....+.|+++.+...|
T Consensus 231 ~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~~~~ 308 (618)
T 1qsa_A 231 ENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNTWL 308 (618)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999987742 1222 23333333444454667777777765533 34333333444445679999999999
Q ss_pred HHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCc
Q 009066 297 DSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAA 376 (545)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 376 (545)
..|... ......-.--+..++...|+.++|..+|.++.. +. +|..++.+- +.|..-. . ......+....
T Consensus 309 ~~l~~~--~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~-~~--~fYg~lAa~-~Lg~~~~-~----~~~~~~~~~~~ 377 (618)
T 1qsa_A 309 ARLPME--AKEKDEWRYWQADLLLERGREAEAKEILHQLMQ-QR--GFYPMVAAQ-RIGEEYE-L----KIDKAPQNVDS 377 (618)
T ss_dssp HHSCTT--GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-SC--SHHHHHHHH-HTTCCCC-C----CCCCCCSCCCC
T ss_pred HHcccc--ccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc-CC--ChHHHHHHH-HcCCCCC-C----CCCCCChhHHh
Confidence 988642 122344444567788889999999999999832 32 444444332 2221100 0 00011111111
Q ss_pred ----hhHHHHHHHHHHcCCchHHHHHHHHhhh
Q 009066 377 ----GCYVQLANIYAAMKKWDDVARIRLSMKE 404 (545)
Q Consensus 377 ----~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 404 (545)
..-...+..+...|...+|...+..+.+
T Consensus 378 ~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~ 409 (618)
T 1qsa_A 378 ALTQGPEMARVRELMYWNLDNTARSEWANLVK 409 (618)
T ss_dssp HHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred hhccChHHHHHHHHHHCCChhhHHHHHHHHHh
Confidence 0122345567788988888887776654
No 290
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=50.44 E-value=1.2e+02 Score=25.80 Aligned_cols=98 Identities=13% Similarity=0.163 Sum_probs=63.4
Q ss_pred HHHHHHHhcCC--CCCee---hHHHHHHHHHhCCCHHHHHHHHhhCCc-----CCHhHHHHHHHHHHHcCChHHHHHHHh
Q 009066 56 VAAFDFFQRLP--IKDTA---SWNTMISGFVQKKNMAKARDLFLAMPE-----KNSVSWSAMISGYIECGQLDKAVELFK 125 (545)
Q Consensus 56 ~~A~~~~~~m~--~~d~~---~~~~li~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~f~ 125 (545)
+++.+.|.... ..|.. .|-..+..+ ..++..++..+|..|.. .-...|......+-..|++.+|.++|+
T Consensus 61 Erc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~ 139 (202)
T 3esl_A 61 ERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLE 139 (202)
T ss_dssp HHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34444454444 33442 454445544 24446678888887763 345678888888888999999999998
Q ss_pred hCCCCCcccHHHHHHHhcchhhhccCChHHHHHHHHHHHhCCC
Q 009066 126 VAPVKSVVAWTAMISGYMKFGYVENSWAEDGLKLLRMMIGLGI 168 (545)
Q Consensus 126 ~~~~~~~~~~~~li~~~~~~g~~~~g~~~~A~~~~~~m~~~~~ 168 (545)
...+.......-|...+ .++..+|.+.++
T Consensus 140 ~GI~~~A~P~~rL~~~~--------------~~F~~R~~~~~~ 168 (202)
T 3esl_A 140 LGAENNCRPYNRLLRSL--------------SNYEDRLREMNI 168 (202)
T ss_dssp HHHHTTCBSHHHHHHHH--------------HHHHHHHHHTTC
T ss_pred HHHHcCCccHHHHHHHH--------------HHHHHHHHhcCC
Confidence 87777777767776666 345566666655
No 291
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=50.40 E-value=2.3e+02 Score=29.19 Aligned_cols=26 Identities=12% Similarity=0.199 Sum_probs=20.6
Q ss_pred cHHHHHHHHHHhCCCChHHHHHHHccCC
Q 009066 7 VNWNSVLAGFAKQRGKLKDAQELFDKIP 34 (545)
Q Consensus 7 ~~~~~li~~~~~~g~~~~~A~~~f~~~~ 34 (545)
.+|- +|=-+.+||. +++|.++.++..
T Consensus 154 p~Wa-~IyY~LR~G~-~~~A~e~~~~~~ 179 (661)
T 2qx5_A 154 PIWA-LIFYLLRAGL-IKEALQVLVENK 179 (661)
T ss_dssp EHHH-HHHHHHTTTC-HHHHHHHHHHTG
T ss_pred ccHH-HHHHHHhcCC-HHHHHHHHHHhh
Confidence 3554 6778899999 999999887764
No 292
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=46.83 E-value=79 Score=25.45 Aligned_cols=23 Identities=4% Similarity=0.284 Sum_probs=10.8
Q ss_pred HHHHHHHhCCCHHHHHHHHhhCC
Q 009066 75 TMISGFVQKKNMAKARDLFLAMP 97 (545)
Q Consensus 75 ~li~~~~~~g~~~~a~~~~~~~~ 97 (545)
.++.-|...|+.++|.+.++++.
T Consensus 14 ~lL~EY~~~~D~~EA~~cl~EL~ 36 (152)
T 2ion_A 14 MLLKEYLLSGDISEAEHCLKELE 36 (152)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCHHHHHHHHHHhC
Confidence 34444444444444444444443
No 293
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=45.03 E-value=1.2e+02 Score=24.39 Aligned_cols=49 Identities=12% Similarity=0.070 Sum_probs=38.1
Q ss_pred HHHHHHHHHhc--CCCCCCchhHHHHHHHHHHcCCchHHHHHHHHhhhCCCc
Q 009066 359 LAEFAAMNLFN--LNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVV 408 (545)
Q Consensus 359 ~A~~~~~~~~~--~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 408 (545)
.+..+|..|.. ++-..+. .|...+..+...|++.+|.++++.-.+++-.
T Consensus 83 dp~~if~~L~~~~IG~~~Al-fYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~ 133 (152)
T 4a1g_A 83 DLHQFFEFLYNHGIGTLSSP-LYIAWAGHLEAQGELQHASAVLQRGIQNQAE 133 (152)
T ss_dssp CHHHHHHHHHTTTTTTTBHH-HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred CHHHHHHHHHHCCCcHHHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 37778887765 4444555 7888899999999999999999988877655
No 294
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=44.04 E-value=1.1e+02 Score=25.26 Aligned_cols=58 Identities=9% Similarity=0.168 Sum_probs=26.7
Q ss_pred HHHHHhcCCHHHHHHHHHhc-cC---CChhhHHHHHHHHHHcCC-hHHHHHHHHHHHHcCCCCC
Q 009066 214 ISMYCKCGDLEDACKLFLEI-QR---KDVVTWNAMISGYAQHGK-GEKALRLFDKMKDEGMKPD 272 (545)
Q Consensus 214 i~~y~~~g~~~~A~~~f~~~-~~---~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~ 272 (545)
+...++.|+.+-+..+++.- .. +|..-++.+..+.. .++ ...-.++++.+.+.|..|+
T Consensus 110 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~-~~~~~~~~~~~v~~Ll~~ga~~~ 172 (201)
T 3hra_A 110 LIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVG-LREGNQLYQDIVKLLMENGADQS 172 (201)
T ss_dssp HHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHH-SSCCSHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHH-hccchhhHHHHHHHHHHCCCCCC
Confidence 33445566666666666554 21 23333333333332 232 2233445555555555544
No 295
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=43.33 E-value=82 Score=29.33 Aligned_cols=21 Identities=10% Similarity=0.113 Sum_probs=10.1
Q ss_pred HHHhhCCCCCcccHHHHHHHh
Q 009066 122 ELFKVAPVKSVVAWTAMISGY 142 (545)
Q Consensus 122 ~~f~~~~~~~~~~~~~li~~~ 142 (545)
+++..+...+..+-..+..|+
T Consensus 67 ~Ll~~L~~~~~is~~~~~~Gf 87 (339)
T 1ug3_A 67 QLLHQLLCAGHLSTAQYYQGL 87 (339)
T ss_dssp HHHHHHHHTTSSCHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHH
Confidence 334444444555555555555
No 296
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=42.22 E-value=90 Score=27.29 Aligned_cols=88 Identities=11% Similarity=0.070 Sum_probs=45.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHc--CCCC----CHHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHH
Q 009066 244 MISGYAQHGKGEKALRLFDKMKDE--GMKP----DSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVD 317 (545)
Q Consensus 244 li~~~~~~g~~~~A~~~~~~m~~~--g~~p----~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 317 (545)
-+..+....++++|++++++.... +.++ +.......+..-.....-.-+..+.+.+ .. .+++..-...+.
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~~---~~~~~~~r~~v~ 99 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-LS---SNEIVHLKSGTE 99 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-HT---CSSHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh---cCCHHHHHHHHH
Confidence 355666777788887777766541 2222 1112222222222222222333333333 21 445555566677
Q ss_pred HHhHcCCHHHHHHHHHhC
Q 009066 318 LLGRAGKLVEAVDLIKKM 335 (545)
Q Consensus 318 ~~~~~g~~~~A~~~~~~m 335 (545)
.+.+.|+-++|.++|-+.
T Consensus 100 ~L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 100 NMIKLGLPEQALDLFLQN 117 (235)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHCCChhHHHHHHHHH
Confidence 788888888888877543
No 297
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=42.10 E-value=65 Score=25.94 Aligned_cols=62 Identities=16% Similarity=0.263 Sum_probs=36.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhccCCC---hhhHHHHHHHHHHcCC--hHHHHHHHHHHHHcCCCC
Q 009066 210 LTPLISMYCKCGDLEDACKLFLEIQRKD---VVTWNAMISGYAQHGK--GEKALRLFDKMKDEGMKP 271 (545)
Q Consensus 210 ~~~li~~y~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p 271 (545)
.+.++.-|...|+.++|.+.++++..|. .+....+..++-+.+. .+.+..++..+...|+-+
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is 78 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 78 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 3457777888888888888888886552 2233344444443222 344666666666655443
No 298
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=42.07 E-value=1.2e+02 Score=23.51 Aligned_cols=21 Identities=19% Similarity=0.419 Sum_probs=9.2
Q ss_pred HHHHHHHcCChHHHHHHHhhC
Q 009066 107 MISGYIECGQLDKAVELFKVA 127 (545)
Q Consensus 107 li~~~~~~g~~~~A~~~f~~~ 127 (545)
++.=|...|+.++|.+.++++
T Consensus 13 ll~EY~~~~D~~Ea~~cl~eL 33 (129)
T 2nsz_A 13 LLKEYLLSGDISEAEHCLKEL 33 (129)
T ss_dssp HHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHh
Confidence 344444444444444444444
No 299
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=41.31 E-value=1.4e+02 Score=24.26 Aligned_cols=48 Identities=17% Similarity=0.110 Sum_probs=37.3
Q ss_pred HHHHHHHHhc--CCCCCCchhHHHHHHHHHHcCCchHHHHHHHHhhhCCCc
Q 009066 360 AEFAAMNLFN--LNPANAAGCYVQLANIYAAMKKWDDVARIRLSMKENNVV 408 (545)
Q Consensus 360 A~~~~~~~~~--~~p~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 408 (545)
+..+|..|.. ++-..+. .|...+..+...|++.+|.++++.-.+++-.
T Consensus 79 p~~if~~L~~~~IG~~~Al-fY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~ 128 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQ-FYISWAEEYEARENFRKADAIFQEGIQQKAE 128 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHH-HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HHHHHHHHHHCCcchhhHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 5567777754 4455555 7888899999999999999999988887655
No 300
>2k0q_A Putative uncharacterized protein COPK; copper, heavy metal resistance, open barrel, plasmid- encoded, metal binding protein; NMR {Cupriavidus metallidurans} PDB: 2km0_A 2lel_A 3dso_A 3dsp_A 3n7d_A 3n7e_A
Probab=39.83 E-value=11 Score=25.47 Aligned_cols=22 Identities=27% Similarity=0.496 Sum_probs=17.7
Q ss_pred ceEEEecCCccccccCCcCCCC
Q 009066 521 REIIVRDTTRFHHFKDGTCSCG 542 (545)
Q Consensus 521 ~~~~~~d~~~~h~~~~g~~~~~ 542 (545)
..|-+.|....|+|+||+-+-+
T Consensus 8 k~v~LkDGstvyiFKDGKMamE 29 (74)
T 2k0q_A 8 KTYDLQDGSKVHVFKDGKMGME 29 (74)
T ss_dssp EEEEBTTSCEEEEETTSCEEEE
T ss_pred eeEecCCCcEEEEEcCCceehh
Confidence 4566889999999999986543
No 301
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=37.79 E-value=1.6e+02 Score=24.89 Aligned_cols=82 Identities=9% Similarity=-0.014 Sum_probs=38.2
Q ss_pred cCCHHHHHHHHHhCCCCCCHh---HHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchHHHHH
Q 009066 322 AGKLVEAVDLIKKMPFKPQPA---IFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVARI 398 (545)
Q Consensus 322 ~g~~~~A~~~~~~m~~~p~~~---~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~~~ 398 (545)
.|...+..+++.+.+..++.. .-.+.+...+..|+.+-+..+++.-...+..+.. . ..-+....+.|+.+-+..+
T Consensus 152 ~~~~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~-g-~t~l~~A~~~~~~~~v~~L 229 (240)
T 3eu9_A 152 RTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIK-G-ESALDLAKQRKNVWMINHL 229 (240)
T ss_dssp HCCSSTTHHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCTT-S-CBHHHHHHHTTCHHHHHHH
T ss_pred hCChHHHHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCC-C-CCHHHHHHHcCcHHHHHHH
Confidence 344444455555543222221 1123445556778888777777664333222211 1 1223444566777666655
Q ss_pred HHHhhhC
Q 009066 399 RLSMKEN 405 (545)
Q Consensus 399 ~~~m~~~ 405 (545)
++...+.
T Consensus 230 ~~~~~~~ 236 (240)
T 3eu9_A 230 QEARQAK 236 (240)
T ss_dssp HHHC---
T ss_pred HHhhhcc
Confidence 5554443
No 302
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=37.50 E-value=1.8e+02 Score=24.38 Aligned_cols=14 Identities=14% Similarity=0.204 Sum_probs=5.8
Q ss_pred HHcCChHHHHHHHh
Q 009066 112 IECGQLDKAVELFK 125 (545)
Q Consensus 112 ~~~g~~~~A~~~f~ 125 (545)
+..|+.+-...+++
T Consensus 48 ~~~g~~~~v~~Ll~ 61 (231)
T 3aji_A 48 CSAGHTEIVEFLLQ 61 (231)
T ss_dssp HHHTCHHHHHHHHH
T ss_pred HHcCcHHHHHHHHH
Confidence 33444444444443
No 303
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=37.47 E-value=2.7e+02 Score=26.36 Aligned_cols=21 Identities=5% Similarity=0.022 Sum_probs=11.3
Q ss_pred HHhcCCHHHHHHHHHHHhcCC
Q 009066 351 CRVHKRLDLAEFAAMNLFNLN 371 (545)
Q Consensus 351 ~~~~g~~~~A~~~~~~~~~~~ 371 (545)
.+..|+.+-+..+.+.-...+
T Consensus 285 A~~~~~~~~~~~Ll~~g~~~~ 305 (437)
T 1n11_A 285 VAQEGHVPVADVLIKHGVMVD 305 (437)
T ss_dssp HHHHTCHHHHHHHHHHTCCTT
T ss_pred HHHcCCHHHHHHHHhCCccCC
Confidence 345666666666655543333
No 304
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=37.19 E-value=1.9e+02 Score=24.38 Aligned_cols=46 Identities=17% Similarity=0.094 Sum_probs=24.2
Q ss_pred HHHHHHhCCCCCCHH--HHHHHHHHHhccCcHHHHHHHHHHHHhCCCC
Q 009066 159 LLRMMIGLGIRPNAS--SLSSVLLGCSHLSSLQLGKQVHQLVFKSPLC 204 (545)
Q Consensus 159 ~~~~m~~~~~~pd~~--t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~ 204 (545)
+++.+.+.|..++.. .-.+.+...+..|+.+.+..+.+.+++.|..
T Consensus 136 ~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~ 183 (232)
T 2rfa_A 136 IVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGG 183 (232)
T ss_dssp HHHHHHHTTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHCCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCc
Confidence 444444555444321 1112344445667777777777777776643
No 305
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=34.95 E-value=4.4e+02 Score=28.53 Aligned_cols=51 Identities=14% Similarity=0.016 Sum_probs=34.5
Q ss_pred HHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhC
Q 009066 279 LLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKM 335 (545)
Q Consensus 279 ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 335 (545)
++..|...|..+.+.++.. -.+.++..--.+..+|...|+.++|...|++.
T Consensus 816 l~~~L~~~~~~~~a~eL~~------~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kA 866 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIG------WLNSDPIAVYLKALIYLKSKEAVKAVRCFKTT 866 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGG------GCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHHhcHHHHHHHHHh------hcCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5566677777776655432 22334444346778888899999999999877
No 306
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=34.55 E-value=1.2e+02 Score=30.01 Aligned_cols=26 Identities=19% Similarity=0.208 Sum_probs=13.6
Q ss_pred HHHHHHHHHHhHcCCHHHHHHHHHhC
Q 009066 310 DHYTCMVDLLGRAGKLVEAVDLIKKM 335 (545)
Q Consensus 310 ~~~~~li~~~~~~g~~~~A~~~~~~m 335 (545)
..++.++..|...+.++.|..+..+.
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~ 257 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKL 257 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHH
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcC
Confidence 34445555555555555555555554
No 307
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=33.14 E-value=3.2e+02 Score=25.86 Aligned_cols=16 Identities=13% Similarity=0.183 Sum_probs=8.4
Q ss_pred HHhcCCHHHHHHHHHH
Q 009066 351 CRVHKRLDLAEFAAMN 366 (545)
Q Consensus 351 ~~~~g~~~~A~~~~~~ 366 (545)
.+..|+.+....+++.
T Consensus 318 A~~~g~~~~v~~Ll~~ 333 (437)
T 1n11_A 318 ASHYGNIKLVKFLLQH 333 (437)
T ss_dssp HHHSSCSHHHHHHHHT
T ss_pred HHHcCcHHHHHHHHhc
Confidence 3455666655555543
No 308
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=33.11 E-value=2.4e+02 Score=25.99 Aligned_cols=17 Identities=6% Similarity=-0.160 Sum_probs=8.4
Q ss_pred HHHhcCCHHHHHHHHHh
Q 009066 216 MYCKCGDLEDACKLFLE 232 (545)
Q Consensus 216 ~y~~~g~~~~A~~~f~~ 232 (545)
..+..|+.+-+..+++.
T Consensus 179 ~A~~~g~~~~v~~Ll~~ 195 (364)
T 3ljn_A 179 RAMEFRNREALDLMMDT 195 (364)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHhc
Confidence 33445555555555543
No 309
>2pk8_A Uncharacterized protein PF0899; structural genomics, uncharacte protein, PSI, protein structure initiative; 1.85A {Pyrococcus furiosus dsm 3638} SCOP: d.274.1.1
Probab=32.67 E-value=27 Score=25.07 Aligned_cols=28 Identities=25% Similarity=0.559 Sum_probs=23.5
Q ss_pred ChHHHHHHHHHHHHHHHHcCcccCCccc
Q 009066 434 ELVSIHEKLKELEKRMKLAGYVPDLEFA 461 (545)
Q Consensus 434 ~~~~~~~~l~~~~~~m~~~g~~pd~~~~ 461 (545)
+..+|+..+++...+++..|+.||...+
T Consensus 14 dlirIl~~ieekinELk~dG~ePDIiL~ 41 (103)
T 2pk8_A 14 DLIRILGEIEEKMNELKMDGFNPDIILF 41 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCCEEEE
T ss_pred cHHHHHHHHHHHHHHHHhcCCCCCeEEE
Confidence 4567888889999999999999997655
No 310
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=31.27 E-value=2.3e+02 Score=23.89 Aligned_cols=16 Identities=13% Similarity=0.086 Sum_probs=7.8
Q ss_pred HHHcCChHHHHHHHhh
Q 009066 111 YIECGQLDKAVELFKV 126 (545)
Q Consensus 111 ~~~~g~~~~A~~~f~~ 126 (545)
.+..|+.+-...+++.
T Consensus 84 A~~~~~~~~~~~Ll~~ 99 (237)
T 3b7b_A 84 AAKKGHYEVVQYLLSN 99 (237)
T ss_dssp HHHTTCHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHhC
Confidence 3444555555555543
No 311
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=30.23 E-value=1.8e+02 Score=25.85 Aligned_cols=89 Identities=8% Similarity=0.017 Sum_probs=45.0
Q ss_pred HHHhHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCchHHH
Q 009066 317 DLLGRAGKLVEAVDLIKKMPFKPQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANAAGCYVQLANIYAAMKKWDDVA 396 (545)
Q Consensus 317 ~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~a~ 396 (545)
......|+.+-+..+++.-....+...-.+.+...+..|+.+-+..+++.-...+..+.. .....+......|..
T Consensus 134 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~-g~t~~L~~A~~~~~~---- 208 (285)
T 3kea_A 134 YHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSL-LFIPDIKLAIDNKDI---- 208 (285)
T ss_dssp HHHHHTTCHHHHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHHHHHTCTTCCC-BCCTTHHHHHHHTCH----
T ss_pred HHHHHcCCHHHHHHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHHcCCCCCcccCC-CCChHHHHHHHcCCH----
Confidence 334456776666666655432223312334445556778888887777765544433221 112212223345553
Q ss_pred HHHHHhhhCCCccC
Q 009066 397 RIRLSMKENNVVKM 410 (545)
Q Consensus 397 ~~~~~m~~~~~~~~ 410 (545)
++.+.+.+.|..++
T Consensus 209 ~~v~~Ll~~gad~~ 222 (285)
T 3kea_A 209 EMLQALFKYDINIY 222 (285)
T ss_dssp HHHHHHTTSCBCST
T ss_pred HHHHHHHHcCCCCC
Confidence 34555666676543
No 312
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=29.52 E-value=1.4e+02 Score=23.50 Aligned_cols=62 Identities=8% Similarity=0.040 Sum_probs=38.6
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHH
Q 009066 263 KMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLV 326 (545)
Q Consensus 263 ~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 326 (545)
.+.+.|++++..-. .++..+...+..-.|.++++.+.+. +...+..|.---++.+...|-+.
T Consensus 12 ~l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~-~~~is~aTVYR~L~~L~e~Glv~ 73 (145)
T 2fe3_A 12 TLKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGK-FPNMSVATVYNNLRVFRESGLVK 73 (145)
T ss_dssp HHHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGG-CTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHh-CCCCChhhHHHHHHHHHHCCCEE
Confidence 35567777665433 3344444455566778888887665 44556666556667788888754
No 313
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=28.91 E-value=4.2e+02 Score=25.87 Aligned_cols=130 Identities=15% Similarity=0.170 Sum_probs=75.9
Q ss_pred HHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH
Q 009066 198 VFKSPLCKDTTALTPLISMYCKCGDLEDACKLFLEIQR---KDVVTWNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSI 274 (545)
Q Consensus 198 ~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 274 (545)
+.+.|++--...|..-.+.+...|++++|.++--..+. ++..+.+.+-..=.+-|+..--+.+|..+.+.| +.|..
T Consensus 352 A~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~giLRt~~Ti~rFk~vp~~pgq~splL~YF~~Ll~~g-~Ln~~ 430 (494)
T 1bpo_A 352 AVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPKGILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQG-QLNKY 430 (494)
T ss_dssp HHHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGGGSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHHS-CCCHH
T ss_pred HHhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCccccccCHHHHHHHhcCCCCCCCCCHHHHHHHHHhccC-ccchH
Confidence 34445555455555556677778888888887776654 455555544444444566666777777777765 34544
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHHHHHHHHHhCCC
Q 009066 275 TFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLVEAVDLIKKMPF 337 (545)
Q Consensus 275 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 337 (545)
-=..+.+.-...|+.+...+++. +..+..+.+. .|+. +..+..-|+.+|.+.+.
T Consensus 431 ESlEl~r~vL~q~r~~llekWl~----e~KL~~SEeL----GDlv-k~~d~~LAl~IY~~a~~ 484 (494)
T 1bpo_A 431 ESLELCRPVLQQGRKQLLEKWLK----EDKLECSEEL----GDLV-KSVDPTLALSVYLRANV 484 (494)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHH----HTCSCCCHHH----HHHH-HHHCSHHHHHHHHHHCC
T ss_pred HhhHHhHHHHhccHHHHHHHHHh----cCCccccHHh----Hhhh-hhcCHHHHHHHHHHcCC
Confidence 33445555556666665555543 2245555443 2222 45567777777777643
No 314
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=27.91 E-value=83 Score=22.97 Aligned_cols=38 Identities=16% Similarity=0.238 Sum_probs=28.1
Q ss_pred CCHHHHHHHHHhccCCChhhHHHHHHHHHHcCChHHHH
Q 009066 221 GDLEDACKLFLEIQRKDVVTWNAMISGYAQHGKGEKAL 258 (545)
Q Consensus 221 g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~ 258 (545)
...+.|.++++.++.+...+|..++.++...|+..-|.
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHH
Confidence 35778888888888888888888888887666654443
No 315
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=27.52 E-value=2e+02 Score=22.85 Aligned_cols=62 Identities=10% Similarity=0.078 Sum_probs=33.5
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhHcCCHH
Q 009066 263 KMKDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKPDHYTCMVDLLGRAGKLV 326 (545)
Q Consensus 263 ~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 326 (545)
.+.+.|++++..-. .++..+...+..-.|.++++.+.+. +...+..|.---++.+...|-+.
T Consensus 17 ~l~~~g~r~T~qR~-~IL~~l~~~~~~~sa~ei~~~l~~~-~~~is~aTVYR~L~~L~e~Glv~ 78 (150)
T 2xig_A 17 SIKKNGLKNSKQRE-EVVSVLYRSGTHLSPEEITHSIRQK-DKNTSISSVYRILNFLEKENFIS 78 (150)
T ss_dssp HHHHCC--CHHHHH-HHHHHHHHCSSCBCHHHHHHHHHHH-STTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHh-CCCCCHhhHHHHHHHHHHCCcEE
Confidence 34556666544322 3344444445556677777777654 44445555555566677777654
No 316
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=27.24 E-value=3.6e+02 Score=24.56 Aligned_cols=25 Identities=24% Similarity=0.371 Sum_probs=15.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHhccCC
Q 009066 212 PLISMYCKCGDLEDACKLFLEIQRK 236 (545)
Q Consensus 212 ~li~~y~~~g~~~~A~~~f~~~~~~ 236 (545)
.++.-|...|+.++|.+.++++..|
T Consensus 171 ~lL~EY~~~~D~~EA~~ci~EL~~p 195 (307)
T 2zu6_B 171 MLLKEYLLSGDISEAEHCLKELEVP 195 (307)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHCCG
T ss_pred HHHHHHHcCCCHHHHHHHHHHcCCC
Confidence 4566666666666666666666544
No 317
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=26.56 E-value=60 Score=23.76 Aligned_cols=27 Identities=22% Similarity=0.161 Sum_probs=17.5
Q ss_pred ChHHHHHHHhhCCCCCcccHHHHHHHh
Q 009066 116 QLDKAVELFKVAPVKSVVAWTAMISGY 142 (545)
Q Consensus 116 ~~~~A~~~f~~~~~~~~~~~~~li~~~ 142 (545)
+.+.|+++++.++.++..+|..++.++
T Consensus 52 ~~~~ar~Lld~L~~rG~~Af~~F~~aL 78 (97)
T 3ygs_P 52 RRDQARQLIIDLETRGSQALPLFISCL 78 (97)
T ss_dssp HHHHHHHHHHHHTTSCTTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcChHHHHHHHHHH
Confidence 456666666666666666666666666
No 318
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=26.50 E-value=3.7e+02 Score=24.55 Aligned_cols=217 Identities=11% Similarity=0.038 Sum_probs=106.9
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHHHhCCCCCCccc--HHHHHHHHHhcCCHHHHHHHHHhccCCCh-hhHHHHHH
Q 009066 170 PNASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCKDTTA--LTPLISMYCKCGDLEDACKLFLEIQRKDV-VTWNAMIS 246 (545)
Q Consensus 170 pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~y~~~g~~~~A~~~f~~~~~~~~-~~~~~li~ 246 (545)
.|..-.+.+.. .+..|+.+.++.++ +.|..++... ..+.+...+..|+.+-+..+++.-...+. .-++. +.
T Consensus 16 ~d~~g~t~L~~-Aa~~g~~~~v~~Ll----~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~-L~ 89 (364)
T 3ljn_A 16 SDDENMEKIHV-AARKGQTDEVRRLI----ETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLWHGQKP-IH 89 (364)
T ss_dssp CCHHHHHHHHH-HHHHTCHHHHHHHH----HTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCCBTTBCH-HH
T ss_pred cCCCCCCHHHH-HHHcCCHHHHHHHH----HcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCH-HH
Confidence 34444444443 44557766655554 4454443321 12345556677888888888776554333 22333 33
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCHH--------------------HHHHHHHHHHccC--cHHHHHHHHHHhHHhcC
Q 009066 247 GYAQHGKGEKALRLFDKMKDEGMKPDSI--------------------TFVALLLACNHAG--LVDLGIQYFDSMVNDYG 304 (545)
Q Consensus 247 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~--------------------t~~~ll~a~~~~g--~~~~a~~~~~~~~~~~~ 304 (545)
.-+..|+.+-+..+++.....|..|+.. -.+.|. ..+..| ..+-...+++. |
T Consensus 90 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~-~A~~~g~~~~~~v~~Ll~~-----g 163 (364)
T 3ljn_A 90 LAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALH-WCVGLGPEYLEMIKILVQL-----G 163 (364)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHH-HHHHSCGGGHHHHHHHHHH-----T
T ss_pred HHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHH-HHHHcCCchHHHHHHHHHc-----C
Confidence 3456677776666666654445544431 122333 334456 55555544432 3
Q ss_pred CCCCHHH--HHHHHHHHhHcCCHHHHHHHHHhCC------CC-CCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC
Q 009066 305 IAAKPDH--YTCMVDLLGRAGKLVEAVDLIKKMP------FK-PQPAIFGTLLSACRVHKRLDLAEFAAMNLFNLNPANA 375 (545)
Q Consensus 305 ~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~------~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~ 375 (545)
..++... ....+..-+..|+.+-+..+++... +. .|..-++.| ...+..|+.+-+..+++.-...+..+.
T Consensus 164 a~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L-~~A~~~g~~~~v~~Ll~~gad~~~~d~ 242 (364)
T 3ljn_A 164 ASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHL-HWAILINWEDVAMRFVEMGIDVNMEDN 242 (364)
T ss_dssp CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTT-HHHHTTTCHHHHHHHHTTTCCTTCCCT
T ss_pred CCCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHH-HHHHHcCCHHHHHHHHHcCCCCCCCCC
Confidence 3332111 1122333456788887777776531 11 122222333 344567887766666554322222222
Q ss_pred chhHHHHHHHHHHcCCchHHHHHHHH
Q 009066 376 AGCYVQLANIYAAMKKWDDVARIRLS 401 (545)
Q Consensus 376 ~~~~~~l~~~~~~~g~~~~a~~~~~~ 401 (545)
. -.. -+...+..|..+-+.-+++.
T Consensus 243 ~-g~t-pL~~A~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 243 E-HTV-PLYLSVRAAMVLLTKELLQK 266 (364)
T ss_dssp T-SCC-HHHHHHHTCCHHHHHHHHHH
T ss_pred C-CCC-HHHHHHHhChHHHHHHHHHc
Confidence 1 122 22334456777666655554
No 319
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=25.60 E-value=3.4e+02 Score=23.71 Aligned_cols=19 Identities=16% Similarity=0.036 Sum_probs=10.2
Q ss_pred cCCHhHHHHHHHHHHHcCC
Q 009066 98 EKNSVSWSAMISGYIECGQ 116 (545)
Q Consensus 98 ~~~~~~~~~li~~~~~~g~ 116 (545)
.++..+-...+..+.+.|.
T Consensus 34 ~~~~~vr~~A~~~L~~~~~ 52 (280)
T 1oyz_A 34 DHNSLKRISSARVLQLRGG 52 (280)
T ss_dssp CSSHHHHHHHHHHHHHHCC
T ss_pred cCCHHHHHHHHHHHHccCC
Confidence 4455555555555555554
No 320
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=24.77 E-value=6.7e+02 Score=27.09 Aligned_cols=48 Identities=6% Similarity=-0.130 Sum_probs=31.7
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHhHHhcCCCCCH----HHHHHHHHHHhHcC
Q 009066 275 TFVALLLACNHAGLVDLGIQYFDSMVNDYGIAAKP----DHYTCMVDLLGRAG 323 (545)
Q Consensus 275 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g 323 (545)
-|..++..+.+.+.++.+.++-+..+... -..|. ..|..+..+.+..|
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~~~-~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADASK-ETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTC-CSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhc-ccCCccchHHHHHHHHHHHhhCC
Confidence 57788888889999998888887776531 12222 34566666655544
No 321
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=24.24 E-value=2.8e+02 Score=22.24 Aligned_cols=43 Identities=9% Similarity=0.102 Sum_probs=17.5
Q ss_pred HHHHHHHHHhCCCCCCc-ccHHHHHHHHHhcCCHHHHHHHHHhc
Q 009066 191 GKQVHQLVFKSPLCKDT-TALTPLISMYCKCGDLEDACKLFLEI 233 (545)
Q Consensus 191 a~~~~~~~~~~g~~~~~-~~~~~li~~y~~~g~~~~A~~~f~~~ 233 (545)
...+|..|...|+.... ..|......+-..|++.+|.++|+.-
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~G 127 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRG 127 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44445555444443322 12333333344444444444444433
No 322
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=23.99 E-value=1.9e+02 Score=24.45 Aligned_cols=51 Identities=8% Similarity=-0.156 Sum_probs=24.1
Q ss_pred HHhccCcHHHHHHHHHHHHhCCCCCCccc--HHHHHHHHHhcCCHHHHHHHHH
Q 009066 181 GCSHLSSLQLGKQVHQLVFKSPLCKDTTA--LTPLISMYCKCGDLEDACKLFL 231 (545)
Q Consensus 181 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~y~~~g~~~~A~~~f~ 231 (545)
..+..|+.+..+.+++...+.|..++... ..+.+...+..|+.+-+..+++
T Consensus 15 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 67 (241)
T 1k1a_A 15 IAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVT 67 (241)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHH
Confidence 33445666666666665555554433221 1123333444555554444444
No 323
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=23.96 E-value=1.7e+02 Score=23.74 Aligned_cols=71 Identities=15% Similarity=0.143 Sum_probs=42.1
Q ss_pred HHHHHHHHHH-HHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHhHHhc-CCCCCHHHHHHHHHHHhHcCCHH
Q 009066 255 EKALRLFDKM-KDEGMKPDSITFVALLLACNHAGLVDLGIQYFDSMVNDY-GIAAKPDHYTCMVDLLGRAGKLV 326 (545)
Q Consensus 255 ~~A~~~~~~m-~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~ 326 (545)
+++++-+.+. .+.|++++..- ..++..+...+..-.|.++++.+.+.. +...+..|.---++.+...|-+.
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~qR-~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~ 86 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTKQR-EVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVT 86 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCHHH-HHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEE
Confidence 4455555443 44677776543 345566666667777888888776531 22344544445567777888754
No 324
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=23.92 E-value=2e+02 Score=22.17 Aligned_cols=16 Identities=19% Similarity=0.005 Sum_probs=7.5
Q ss_pred HHhcCCHHHHHHHHHh
Q 009066 217 YCKCGDLEDACKLFLE 232 (545)
Q Consensus 217 y~~~g~~~~A~~~f~~ 232 (545)
.++.|+.+-+.-+++.
T Consensus 108 A~~~~~~~~v~~Ll~~ 123 (156)
T 1bd8_A 108 AVQEGHTAVVSFLAAE 123 (156)
T ss_dssp HHHHTCHHHHHHHHTT
T ss_pred HHHhChHHHHHHHHhc
Confidence 3344555544444443
No 325
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=23.50 E-value=1.2e+02 Score=23.25 Aligned_cols=43 Identities=9% Similarity=0.054 Sum_probs=30.3
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhC
Q 009066 159 LLRMMIGLGIRPNASSLSSVLLGCSHLSSLQLGKQVHQLVFKS 201 (545)
Q Consensus 159 ~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 201 (545)
+|+.+....+.|+...-..-+..+...++++.|..+|..+...
T Consensus 48 LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t~ 90 (118)
T 2yru_A 48 LREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMVD 90 (118)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHS
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Confidence 5666666667666555445555567788999999999888753
No 326
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=23.46 E-value=2.4e+02 Score=23.69 Aligned_cols=13 Identities=23% Similarity=0.263 Sum_probs=5.8
Q ss_pred HcCCHHHHHHHHH
Q 009066 321 RAGKLVEAVDLIK 333 (545)
Q Consensus 321 ~~g~~~~A~~~~~ 333 (545)
+.|+.+-+..+++
T Consensus 192 ~~~~~~~v~~Ll~ 204 (241)
T 1k1a_A 192 GRGLLPLVRTLVR 204 (241)
T ss_dssp HHTCHHHHHHHHH
T ss_pred HcCCHHHHHHHHh
Confidence 4455444444443
No 327
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=23.29 E-value=3e+02 Score=22.34 Aligned_cols=50 Identities=12% Similarity=0.023 Sum_probs=27.7
Q ss_pred HHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHhCCCCC
Q 009066 156 GLKLLRMMIGLGIRPN-ASSLSSVLLGCSHLSSLQLGKQVHQLVFKSPLCK 205 (545)
Q Consensus 156 A~~~~~~m~~~~~~pd-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~ 205 (545)
+.++|..|...|+--. +..|......+...|++.+|.++|..-++.+-.|
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 4556666666654432 3344444445555666666666666666555444
No 328
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=22.71 E-value=3.1e+02 Score=22.21 Aligned_cols=45 Identities=24% Similarity=0.309 Sum_probs=20.5
Q ss_pred HhCCCChHHHHHHHccCC-C---CChhhHHHHHHHHHcCCCCHHHHHHHHhc
Q 009066 17 AKQRGKLKDAQELFDKIP-Q---PDVVSYNIMLSCILLNSDDVVAAFDFFQR 64 (545)
Q Consensus 17 ~~~g~~~~~A~~~f~~~~-~---~~~~~~~~li~~~~~~~g~~~~A~~~~~~ 64 (545)
+..|+ .+....++..-. . +|..-++.+..+ +.. |+.+-+..+++.
T Consensus 13 ~~~g~-~~~v~~ll~~~~~~~~~~~~~g~t~L~~A-~~~-~~~~~v~~Ll~~ 61 (201)
T 3hra_A 13 ANQRD-TKKVKEILQDTTYQVDEVDTEGNTPLNIA-VHN-NDIEIAKALIDR 61 (201)
T ss_dssp HHTTC-HHHHHHHHTCTTCCTTCCCTTSCCHHHHH-HHH-TCHHHHHHHHHT
T ss_pred HHhcc-HHHHHHHHHcCCCCCCCCCCCCCCHHHHH-HHc-CCHHHHHHHHHc
Confidence 34455 666666665443 1 222223333332 333 555555555544
No 329
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=22.55 E-value=2.9e+02 Score=23.99 Aligned_cols=27 Identities=4% Similarity=-0.103 Sum_probs=17.7
Q ss_pred hHHHHHHHHHHcCCchHHHHHHHHhhh
Q 009066 378 CYVQLANIYAAMKKWDDVARIRLSMKE 404 (545)
Q Consensus 378 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 404 (545)
.....+..+.+.|+-++|..+|-+.+.
T Consensus 93 ~~r~~v~~L~rLg~~~~A~~lfL~~rs 119 (235)
T 2d2s_A 93 HLKSGTENMIKLGLPEQALDLFLQNRS 119 (235)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCChhHHHHHHHHHHH
Confidence 455556667777777777777765543
No 330
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=21.79 E-value=3.5e+02 Score=22.51 Aligned_cols=15 Identities=13% Similarity=0.175 Sum_probs=7.8
Q ss_pred HhCCCChHHHHHHHcc
Q 009066 17 AKQRGKLKDAQELFDK 32 (545)
Q Consensus 17 ~~~g~~~~~A~~~f~~ 32 (545)
++.|+ ++....+++.
T Consensus 17 ~~~g~-~~~~~~Ll~~ 31 (240)
T 3eu9_A 17 TQYGI-YERCRELVEA 31 (240)
T ss_dssp HHTTC-HHHHHHHHHT
T ss_pred HHcCC-hHHHHHHHHc
Confidence 44455 5555555544
No 331
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=20.83 E-value=4.8e+02 Score=23.72 Aligned_cols=66 Identities=9% Similarity=0.229 Sum_probs=39.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCc--HHHHHHHHHHhHHhcCCCCC
Q 009066 241 WNAMISGYAQHGKGEKALRLFDKMKDEGMKPDSITFVALLLACNHAGL--VDLGIQYFDSMVNDYGIAAK 308 (545)
Q Consensus 241 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~--~~~a~~~~~~~~~~~~~~~~ 308 (545)
.+.++.-|...|+.++|...++++...... .......+..+.-+.+. .+...+++..+.+. ++-+.
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~-~~ls~ 236 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKS-STITV 236 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHH-CSSCH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHC-CCCCH
Confidence 556788888889999999999888521111 12334444455554322 45556667666654 44433
Done!