BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009068
(544 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q68FJ8|TM1L2_XENLA TOM1-like protein 2 OS=Xenopus laevis GN=tom1l2 PE=2 SV=1
Length = 507
Score = 87.8 bits (216), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/233 (28%), Positives = 114/233 (48%), Gaps = 38/233 (16%)
Query: 2 VKNCGDFVHFQIAERNVL-GEMVKIV--KKKPDMQLRDKILVLLDSWQEAFGG----PGG 54
VKNCG H Q+ R+ + G +VKI+ K P ++DK+L L+ +W +AF G
Sbjct: 78 VKNCGHRFHVQVTHRDFIDGILVKIISPKNNPPTIVQDKVLALIQAWADAFRSSPDLTGV 137
Query: 55 KHPQYYWAYEDLRRYGVQFPKRSPDA-APIFTPPVS----------HPTLGQAQASYGMP 103
H YE+L+R G++FP DA +PI TP S H + Q + S+
Sbjct: 138 VH-----IYEELKRKGIEFPMADLDALSPIHTPQRSVPEVDPATNMHTSQTQKRDSFSNL 192
Query: 104 SNSS-------------RRLDETMATEVETLSF--SSLDSMRDVMELLSDMLQAVNPSDR 148
SNS + ++ E + S LD +R ++++S+ML + P
Sbjct: 193 SNSKSTSTPYTAPGGPPPNVGGPISANSEQIGRLRSELDIVRGNVKVMSEMLTEMTPGQE 252
Query: 149 EAVKDEVIVDLVSRCRSNQKKLMQMLTTTGDEELLGRGLELNDILQNLLAKHD 201
A E++ DL CR+ Q++++++++ +EE+ L +ND L N+ +++
Sbjct: 253 GASDLELLQDLNRTCRTMQERIVELISRVSNEEVTEELLHVNDDLNNVFLRYE 305
>sp|Q5SRX1|TM1L2_MOUSE TOM1-like protein 2 OS=Mus musculus GN=Tom1l2 PE=1 SV=1
Length = 507
Score = 81.3 bits (199), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/231 (27%), Positives = 111/231 (48%), Gaps = 36/231 (15%)
Query: 2 VKNCGDFVHFQIAERNVLGE-MVKIV--KKKPDMQLRDKILVLLDSWQEAFGG----PGG 54
VKNCG H +A R+ + +VKI+ K P ++DK+L L+ +W +AF G
Sbjct: 78 VKNCGHRFHLLVANRDFIDSVLVKIISPKNNPPTIVQDKVLALIQAWADAFRSSPDLTGV 137
Query: 55 KHPQYYWAYEDLRRYGVQFPKRSPDA-APIFTPPVSHPTL--------GQAQ-------- 97
H YE+L+R G++FP DA +PI TP S P + Q Q
Sbjct: 138 VH-----IYEELKRRGIEFPMADLDALSPIHTPQRSVPEMDPAATIPRSQTQPRTTAGTY 192
Query: 98 -----ASYGMPSNSSRRLDETMATEVETLSF--SSLDSMRDVMELLSDMLQAVNPSDREA 150
ASY + + + E ++ S LD +R +++S+ML + P ++
Sbjct: 193 SSPPPASYSTLQAPALSVTGPITANSEQIARLRSELDIVRGNTKVMSEMLTEMVPGQEDS 252
Query: 151 VKDEVIVDLVSRCRSNQKKLMQMLTTTGDEELLGRGLELNDILQNLLAKHD 201
E++ +L CR+ Q +++++++ +EE+ L +ND L N+ +++
Sbjct: 253 SDLELLQELNRTCRAMQHRIVELISRVSNEEVTEELLHVNDDLNNVFLRYE 303
>sp|Q6ZVM7|TM1L2_HUMAN TOM1-like protein 2 OS=Homo sapiens GN=TOM1L2 PE=1 SV=1
Length = 507
Score = 80.1 bits (196), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 66/231 (28%), Positives = 111/231 (48%), Gaps = 36/231 (15%)
Query: 2 VKNCGDFVHFQIAERNVLGE-MVKIV--KKKPDMQLRDKILVLLDSWQEAFGG----PGG 54
VKNCG H +A R+ + +VKI+ K P ++DK+L L+ +W +AF G
Sbjct: 78 VKNCGHRFHILVANRDFIDSVLVKIISPKNNPPTIVQDKVLALIQAWADAFRSSPDLTGV 137
Query: 55 KHPQYYWAYEDLRRYGVQFPKRSPDA-APIFTPPVSHPTL--------GQAQASYGMPSN 105
H YE+L+R GV+FP DA +PI TP S P + Q+Q S
Sbjct: 138 VH-----IYEELKRKGVEFPMADLDALSPIHTPQRSVPEVDPAATMPRSQSQQRTSAGSY 192
Query: 106 SSRRLDETMATEVETLSF---------------SSLDSMRDVMELLSDMLQAVNPSDREA 150
SS A + LS S LD +R +++S+ML + P ++
Sbjct: 193 SSPPPAPYSAPQAPALSVTGPITANSEQIARLRSELDVVRGNTKVMSEMLTEMVPGQEDS 252
Query: 151 VKDEVIVDLVSRCRSNQKKLMQMLTTTGDEELLGRGLELNDILQNLLAKHD 201
E++ +L CR+ Q++++++++ +EE+ L +ND L N+ +++
Sbjct: 253 SDLELLQELNRTCRAMQQRIVELISRVSNEEVTEELLHVNDDLNNVFLRYE 303
>sp|O88746|TOM1_MOUSE Target of Myb protein 1 OS=Mus musculus GN=Tom1 PE=1 SV=1
Length = 492
Score = 72.0 bits (175), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 70/268 (26%), Positives = 123/268 (45%), Gaps = 38/268 (14%)
Query: 2 VKNCGDFVHFQIAERN-VLGEMVKIV--KKKPDMQLRDKILVLLDSWQEAFGGPGGKHPQ 58
VKNCG H +A ++ V +V+ + K P + DK+L L+ SW +AF
Sbjct: 78 VKNCGHRFHVLVANQDFVENVLVRTILPKNNPPTIVHDKVLNLIQSWADAFRS-SPDLTG 136
Query: 59 YYWAYEDLRRYGVQFPKRSPDA-APIFTPPVSHPTLGQAQASYGMPSNSSRRLDETM-AT 116
YEDLRR G++FP D +PI TP + + SN+S+R D + AT
Sbjct: 137 VVAVYEDLRRKGLEFPMTDLDMLSPIHTPQRTVFNSETPSRQNSVSSNTSQRGDLSQHAT 196
Query: 117 EVETLSF------------------SSLDSMRDVMELLSDMLQAVNPSDREAVKDEVIVD 158
+ T + S L+ + + ++S+ML + P+ E E++ +
Sbjct: 197 PLPTPAVLPGDSPITPTPEQIGKLRSELEMVSGNVRVMSEMLTELVPTQVEPADLELLQE 256
Query: 159 LVSRCRSNQKKLMQMLTTTGDEELLGRGLELNDILQNLLAKHDAI-----------ASGL 207
L CR+ Q+++++++ +E+L L +ND L N+ +H+ +S
Sbjct: 257 LNRTCRAMQQRILELIPRISNEQLTEELLMINDNLNNVFLRHERFERFRTGQTAKASSEA 316
Query: 208 PIPTEVTNLSPKPNEACAASSLKSTDAG 235
+ T++ ++ P P A ++L S AG
Sbjct: 317 ELATDLIDMGPDP---AATNNLSSQLAG 341
>sp|O60784|TOM1_HUMAN Target of Myb protein 1 OS=Homo sapiens GN=TOM1 PE=1 SV=2
Length = 492
Score = 67.0 bits (162), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 60/224 (26%), Positives = 103/224 (45%), Gaps = 26/224 (11%)
Query: 2 VKNCGDFVHFQIAERN-VLGEMVKIV--KKKPDMQLRDKILVLLDSWQEAFGGPGGKHPQ 58
VKNCG H +A ++ V +V+ + K P + DK+L L+ SW +AF
Sbjct: 78 VKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWADAFRS-SPDLTG 136
Query: 59 YYWAYEDLRRYGVQFPKRSPDA-APIFTP--PVSHPTLGQAQASYGMPSNSSRRLDETMA 115
YEDLRR G++FP D +PI TP V + Q S G S+ + A
Sbjct: 137 VVTIYEDLRRKGLEFPMTDLDMLSPIHTPQRTVFNSETQSGQDSVGTDSSQQEDSGQHAA 196
Query: 116 ------------------TEVETLSFSSLDSMRDVMELLSDMLQAVNPSDREAVKDEVIV 157
++ L S L+ + + ++S+ML + P+ E E++
Sbjct: 197 PLPAPPILSGDTPIAPTPEQIGKLR-SELEMVSGNVRVMSEMLTELVPTQAEPADLELLQ 255
Query: 158 DLVSRCRSNQKKLMQMLTTTGDEELLGRGLELNDILQNLLAKHD 201
+L CR+ Q+++++++ +E+L L +ND L N+ +H+
Sbjct: 256 ELNRTCRAMQQRVLELIPQIANEQLTEELLIVNDNLNNVFLRHE 299
>sp|O12940|TOM1_CHICK Target of Myb protein 1 OS=Gallus gallus GN=TOM1 PE=2 SV=2
Length = 515
Score = 59.7 bits (143), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 63/243 (25%), Positives = 113/243 (46%), Gaps = 31/243 (12%)
Query: 2 VKNCGDFVHFQIAERN-VLGEMVKIV--KKKPDMQLRDKILVLLDSWQEAFGGPGGKHPQ 58
VKNCG H +A ++ V +V+ + K P + DK+L L+ SW +AF
Sbjct: 78 VKNCGHRFHILVASQDFVESVLVRTILPKNNPPAIVHDKVLTLIQSWADAFRS-SPDLTG 136
Query: 59 YYWAYEDLRRYGVQFPKRSPDA-APIFTPPVSHPTLGQAQASYGMPSNSSRRLDETM--- 114
YEDLRR G++FP D +PI TP S + NS ++++ +
Sbjct: 137 VVAVYEDLRRKGLEFPMTDLDMLSPIHTPRRSVYSSNSQSGQNSPAVNSPQQMESILHPV 196
Query: 115 -----------------ATEVETLSFSSLDSMRDVMELLSDMLQAVNPSDREAVKDEVIV 157
+++ L S L+ + ++++S+ML + PS E E++
Sbjct: 197 TLPSGRDTSSNVPITPTQEQIKKLR-SELEVVNGNVKVMSEMLTELVPSQAETSDLELLQ 255
Query: 158 DLVSRCRSNQKKLMQMLTTTGDEELLGRGLELNDILQNLLAKH---DAIASGLPI--PTE 212
+L CR+ Q+++++++ E+L L +ND L N+ +H + + +G P+ P+E
Sbjct: 256 ELNRTCRAMQQRVLELIPRVQHEQLTEELLLINDNLNNVFLRHERFERVRTGQPVKAPSE 315
Query: 213 VTN 215
N
Sbjct: 316 AEN 318
>sp|O75674|TM1L1_HUMAN TOM1-like protein 1 OS=Homo sapiens GN=TOM1L1 PE=1 SV=2
Length = 476
Score = 57.0 bits (136), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 60/251 (23%), Positives = 107/251 (42%), Gaps = 17/251 (6%)
Query: 2 VKNCGDFVHFQIAERNVLGE-MVKIVKKKPDM--QLRDKILVLLDSWQEAFGGPGGKHPQ 58
V+NCG I ++ + E +VK++ + ++ ++++IL + +W + F G G +
Sbjct: 80 VQNCGPSFQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRILNFIKTWSQGFPG-GVDVSE 138
Query: 59 YYWAYEDLRRYGVQFP--------KRSPDAAPIFTPPVSHPTLGQAQASYGMPSNSSRRL 110
Y DL + GVQFP R A PP S PT A +S P NS+
Sbjct: 139 VKEVYLDLVKKGVQFPPSEAEAETARQETAQISSNPPTSVPT-APALSSVIAPKNSTV-- 195
Query: 111 DETMATEVETLSFSSLDSMRDVMELLSDMLQAVNPSDREAVKDEVIVDLVSRCRSNQKKL 170
T+ E S LD ++ + ++S +L P E++ L R Q+++
Sbjct: 196 --TLVPEQIGKLHSELDMVKMNVRVMSAILMENTPGSENHEDIELLQKLYKTGREMQERI 253
Query: 171 MQMLTTTGDEELLGRGLELNDILQNLLAKHDAIASGLPIPTEVTNLSPKPNEACAASSLK 230
M +L +E++ +++N+ L N + ++ E + + S
Sbjct: 254 MDLLVVVENEDVTVELIQVNEDLNNAILGYERFTRNQQRILEQNKNQKEATNTTSEPSAP 313
Query: 231 STDAGDSSPTP 241
S D D SP+P
Sbjct: 314 SQDLLDLSPSP 324
>sp|Q99LI8|HGS_MOUSE Hepatocyte growth factor-regulated tyrosine kinase substrate OS=Mus
musculus GN=Hgs PE=1 SV=2
Length = 775
Score = 53.1 bits (126), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 46/78 (58%), Gaps = 7/78 (8%)
Query: 1 MVKNCGDFVHFQIAERNVLGEMVKIVKKKPDMQLRDKILVLLDSWQEAFGGPGGKHPQYY 60
+VKNCG VH ++A + + E+ +++K++ ++ +R+KIL L+ +W AF P+Y
Sbjct: 71 VVKNCGQTVHDEVANKQTMEELKELLKRQVEVNVRNKILYLIQAWAHAFRN----EPKYK 126
Query: 61 WA---YEDLRRYGVQFPK 75
Y+ ++ G FP+
Sbjct: 127 VVQDTYQIMKVEGHVFPE 144
>sp|Q9JJ50|HGS_RAT Hepatocyte growth factor-regulated tyrosine kinase substrate
OS=Rattus norvegicus GN=Hgs PE=1 SV=1
Length = 776
Score = 52.8 bits (125), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 46/78 (58%), Gaps = 7/78 (8%)
Query: 1 MVKNCGDFVHFQIAERNVLGEMVKIVKKKPDMQLRDKILVLLDSWQEAFGGPGGKHPQYY 60
+VKNCG VH ++A + + E+ +++K++ ++ +R+KIL L+ +W AF P+Y
Sbjct: 71 VVKNCGQTVHDEVANKQTMEELKELLKRQVEVNVRNKILYLIQAWAHAFRN----EPKYK 126
Query: 61 WA---YEDLRRYGVQFPK 75
Y+ ++ G FP+
Sbjct: 127 VVQDTYQIMKVEGHVFPE 144
>sp|Q0V8S0|HGS_BOVIN Hepatocyte growth factor-regulated tyrosine kinase substrate OS=Bos
taurus GN=HGS PE=2 SV=1
Length = 777
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 45/78 (57%), Gaps = 7/78 (8%)
Query: 1 MVKNCGDFVHFQIAERNVLGEMVKIVKKKPDMQLRDKILVLLDSWQEAFGGPGGKHPQYY 60
+VKNCG VH ++A + + E+ ++K++ ++ +R+KIL L+ +W AF P+Y
Sbjct: 71 VVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHAFRN----EPKYK 126
Query: 61 WA---YEDLRRYGVQFPK 75
Y+ ++ G FP+
Sbjct: 127 VVQDTYQIMKVEGHVFPE 144
>sp|Q8R0H9|GGA1_MOUSE ADP-ribosylation factor-binding protein GGA1 OS=Mus musculus
GN=Gga1 PE=1 SV=1
Length = 635
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 92/399 (23%), Positives = 167/399 (41%), Gaps = 51/399 (12%)
Query: 2 VKNCGDFVHFQIAERNVLGEMVKIVKKK-----PDMQLRDKILVLLDSWQEAFGGPGGKH 56
+K+CG H ++ + L E++K+V K +++ KIL LL SW +
Sbjct: 74 MKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKSKILELLYSWTVCL----PEE 129
Query: 57 PQYYWAYEDLRRYGV--QFPKRSPDAAPIFTPPVSHPTLGQAQASYGMPS---------- 104
+ AY+ L++ G+ PK DA PP + + + M +
Sbjct: 130 VKIAEAYQMLKKQGIVKSDPKLPEDAIFPLPPPRPKNVIFEDEEKSKMLARLLKSSHPED 189
Query: 105 -NSSRRLDETMATE----VETLS--FSSLDSMRDVMELLSDMLQAVNPSDREAVKDEVIV 157
++ +L + M E +E +S ++++ + + ++LL++M+ + + + ++++
Sbjct: 190 LRAANKLIKEMVQEDQKRMEKISKRVNAIEEVNNNVKLLTEMVMSHSQGAASSSSEDLMK 249
Query: 158 DLVSRCRSNQKKLMQMLTTTGD-EELLGRGLELNDILQNLLAKHDAIASGLPIPTEVTNL 216
+L RC + L ++ + T D +E L L+ ND L ++ + + G + + T
Sbjct: 250 ELYQRCERMRPTLFRLASDTEDNDEALAEILQANDNLTQVINLYKQLVRGEEVNGDATA- 308
Query: 217 SPKPNEACAASSLKSTD------AGDSSPTPNGNHPAPV-ASVTRALIDEEEEEEDDFAL 269
S P A L D ++PT GN +P S + +L+D+E L
Sbjct: 309 SSIPGSTSALLDLSGLDLPPPGTTQPATPTRPGNQSSPEQLSASVSLLDDE--------L 360
Query: 270 LARRHSMPKPGPSQNTSAETGGALVPVSNSNATSSLPAATPSNALALPDPPAPVRTSKEQ 329
++ S P P PS +S G S+ +S P A + P AP TS
Sbjct: 361 MSLGLSDPTP-PSGTSSDSVGWDNFQSSDGTESSVPPPAQAPSMDCRPPAQAPPPTSSGL 419
Query: 330 DIIDLLSITLSTTSTSPHTPHTPPISSQSTQQVPAPSST 368
D +DLL TL + P + +Q PAP T
Sbjct: 420 DDLDLLGKTLMQQALPPEAQQV-----RWEKQQPAPRLT 453
>sp|O14964|HGS_HUMAN Hepatocyte growth factor-regulated tyrosine kinase substrate
OS=Homo sapiens GN=HGS PE=1 SV=1
Length = 777
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 45/78 (57%), Gaps = 7/78 (8%)
Query: 1 MVKNCGDFVHFQIAERNVLGEMVKIVKKKPDMQLRDKILVLLDSWQEAFGGPGGKHPQYY 60
+VKNCG VH ++A + + E+ ++K++ ++ +R+KIL L+ +W AF P+Y
Sbjct: 71 VVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHAFRN----EPKYK 126
Query: 61 WA---YEDLRRYGVQFPK 75
Y+ ++ G FP+
Sbjct: 127 VVQDTYQIMKVEGHVFPE 144
>sp|Q06336|GGA1_YEAST ADP-ribosylation factor-binding protein GGA1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=GGA1 PE=1
SV=1
Length = 557
Score = 50.4 bits (119), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 64/277 (23%), Positives = 119/277 (42%), Gaps = 37/277 (13%)
Query: 1 MVKNCGDFVHFQIAERNVLGEMVKIVKKKPDM---QLRDKILVLLDSWQEAFGGPGGKHP 57
+VKNCG +H QI+ + L ++VK ++P + +++ IL ++ W +
Sbjct: 86 LVKNCGYSIHLQISRKEFLNDLVKRFPEQPPLRYSKVQQMILEAIEEWYQTICKHASYKD 145
Query: 58 --QYYWAYEDLRRY-GVQFPKRSPDAAPIF-------TPPVSHPTLGQAQASY------- 100
QY L +Y G FPK + + TP +AQA+
Sbjct: 146 DLQYINDMHKLLKYKGYTFPKVGSENLAVLRPNDQLRTPSELQEEQERAQAAKLEELLRS 205
Query: 101 GMPSN--SSRRLDETMA-------TEVETLSFSSLDSMRDVMELLSDMLQAVNPSDREAV 151
G P + + +L + MA V+ + L+ ++ +L ++ML + + D E
Sbjct: 206 GKPDDLKEANKLMKIMAGFKDDTKVAVKQAINNELNKLKRKADLFNEMLTSADEPDLE-- 263
Query: 152 KDEVIVDLVSRCRSNQKKLMQMLTTTGDEELLGRGL-ELNDILQNLLAKHDAIASGLPIP 210
+E I +L +S Q K +++ D++ L L + ND++ LL ++ +I +
Sbjct: 264 -NEAIQELYGDLKSAQPKFKKLIEEERDDDALVSNLSKFNDLVIQLLKRYKSIKG---MK 319
Query: 211 TEVTNLSPKPNEACAASSLKSTDAGDSSPTPNGNHPA 247
E N+ P NE +L D ++ TP+ P+
Sbjct: 320 EEELNV-PDTNEPAKELNLIDFDDDTTANTPSVTSPS 355
>sp|Q9NZ52|GGA3_HUMAN ADP-ribosylation factor-binding protein GGA3 OS=Homo sapiens
GN=GGA3 PE=1 SV=1
Length = 723
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 53/245 (21%), Positives = 101/245 (41%), Gaps = 36/245 (14%)
Query: 2 VKNCGDFVHFQIAERNVLGEMVKIVKKK-----PDMQLRDKILVLLDSWQEAFGGPGGKH 56
+KNCG H ++ + L E++K+V K +++ K++ LL SW A +
Sbjct: 73 MKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMALP----EE 128
Query: 57 PQYYWAYEDLRRYGVQFPKRSPDAAPIFTPPVSHPTLGQAQASYGMPS------------ 104
+ AY L+R G+ +S P+ + P +
Sbjct: 129 AKIKDAYHMLKRQGI---VQSDPPIPVDRTLIPSPPPRPKNPVFDDEEKSKLLAKLLKSK 185
Query: 105 -----NSSRRLDETMATEVE------TLSFSSLDSMRDVMELLSDMLQAVNPSDREAVKD 153
+ +L ++M E E T +L+ + + + LLS+ML + D
Sbjct: 186 NPDDLQEANKLIKSMVKEDEARIQKVTKRLHTLEEVNNNVRLLSEMLLHYSQEDSSDGDR 245
Query: 154 EVIVDLVSRCRSNQKKLMQMLTTTGD-EELLGRGLELNDILQNLLAKHDAIASGLPIPTE 212
E++ +L +C + ++ L ++ + T D + LG L+ +D L ++ + I G I E
Sbjct: 246 ELMKELFDQCENKRRTLFKLASETEDNDNSLGDILQASDNLSRVINSYKTIIEGQVINGE 305
Query: 213 VTNLS 217
V L+
Sbjct: 306 VATLT 310
>sp|P38817|GGA2_YEAST ADP-ribosylation factor-binding protein GGA2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=GGA2 PE=1
SV=1
Length = 585
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/240 (22%), Positives = 97/240 (40%), Gaps = 41/240 (17%)
Query: 1 MVKNCGDFVHFQIAERNVLGEMVKIVKKKPDM---QLRDKILVLLDSWQEAFGGPGGKHP 57
+VKNCG H QI+ + L E+VK P + +++ IL ++ W + KH
Sbjct: 90 LVKNCGYPFHLQISRKEFLNELVKRFPGHPPLRYSKIQRLILTAIEEWYQTI----CKHS 145
Query: 58 QY---YWAYEDLRRY----GVQFPKRSPDAAPIFTPPVSHPTLGQAQAS----------- 99
Y D+ R G FPK S + P T + Q
Sbjct: 146 SYKNDMGYIRDMHRLLKYKGYAFPKISESDLAVLKPSNQLKTASEIQKEQEIAQAAKLEE 205
Query: 100 ---YGMPSN--SSRRLDETM-------ATEVETLSFSSLDSMRDVMELLSDMLQAVNPSD 147
G P + + +L + M A + + S L+ ++ +LL++ML++ D
Sbjct: 206 LIRRGKPEDLREANKLMKIMAGFKEDNAVQAKQAISSELNKLKRKADLLNEMLES---PD 262
Query: 148 REAVKDEVIVDLVSRCRSNQKKLMQMLTTTG-DEELLGRGLELNDILQNLLAKHDAIASG 206
+ +E +L S + Q K +++ D+ L+ L+ ND + LL K + + +G
Sbjct: 263 SQNWDNETTQELHSALKVAQPKFQKIIEEEQEDDALVQDLLKFNDTVNQLLEKFNLLKNG 322
>sp|Q10410|YD85_SCHPO Probable ADP-ribosylation factor-binding protein C1F3.05
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC1F3.05 PE=3 SV=1
Length = 510
Score = 43.5 bits (101), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 57/239 (23%), Positives = 96/239 (40%), Gaps = 39/239 (16%)
Query: 2 VKNCGDFVHFQIAERNVLGEMVKIVKKKPDM---QLRDKILVLLDSWQEAFGGPGGKHPQ 58
VKNCG HFQIA L V P +++ K+L +L+ W +H +
Sbjct: 72 VKNCGYPFHFQIASEEFLNGFVSRFPNHPISRMNKIQSKMLEMLEEWNYML-CKNNRHRE 130
Query: 59 YYWAYEDLRRY----GVQFPKRSPDAAPIFTPPVS--------------HPTLGQAQASY 100
+ D+R G +FP D+ + P S H Q
Sbjct: 131 DFSRIHDIRELMAFRGYKFPAVDEDSIAVMKPNNSLRSAQELAREDLEAHKAKLQELLRR 190
Query: 101 GMP-----SNSSRRL----DETMATEVETLSFSSLDSMRDVMELLSDMLQAVNPSDREAV 151
G P +N+ ++ DE + L+ + L+S+R + L VN + ++
Sbjct: 191 GTPMDLAEANALMKVIAGYDEENTEDYSALAAADLESIRSKALRVKQFL--VNQT--VSL 246
Query: 152 KDEVIVDLVSRCRSNQKKLMQMLTTTG-DEELLGRGLELNDILQNLL---AKHDAIASG 206
++ + D V + Q K+ ++L DE + + L LND+L N++ + D I SG
Sbjct: 247 EEGTLADAVESLKVYQTKIARILREENEDEYYVQKLLSLNDLLINVIEECSNSDLIHSG 305
>sp|Q9UJY5|GGA1_HUMAN ADP-ribosylation factor-binding protein GGA1 OS=Homo sapiens
GN=GGA1 PE=1 SV=1
Length = 639
Score = 43.1 bits (100), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 50/231 (21%), Positives = 106/231 (45%), Gaps = 30/231 (12%)
Query: 2 VKNCGDFVHFQIAERNVLGEMVKIVKKK-----PDMQLRDKILVLLDSWQEAFGGPGGKH 56
+K+CG H ++ + L E++K+V K ++++KIL LL SW G P +
Sbjct: 74 MKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSW--TVGLP--EE 129
Query: 57 PQYYWAYEDLRRYGV--QFPKRSPDAAPIFTPPVSHPTLGQAQASYGMPS---------- 104
+ AY+ L++ G+ PK D PP + + + M +
Sbjct: 130 VKIAEAYQMLKKQGIVKSDPKLPDDTTFPLPPPRPKNVIFEDEEKSKMLARLLKSSHPED 189
Query: 105 -NSSRRLDETMATE----VETLS--FSSLDSMRDVMELLSDMLQAVNPSDREA-VKDEVI 156
++ +L + M E +E +S ++++ + + ++LL++M+ + + A ++++
Sbjct: 190 LRAANKLIKEMVQEDQKRMEKISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLM 249
Query: 157 VDLVSRCRSNQKKLMQMLTTTGD-EELLGRGLELNDILQNLLAKHDAIASG 206
+L RC + L ++ + T D +E L L+ ND L ++ + + G
Sbjct: 250 KELYQRCERMRPTLFRLASDTEDNDEALAEILQANDNLTQVINLYKQLVRG 300
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.310 0.127 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 226,287,800
Number of Sequences: 539616
Number of extensions: 10808936
Number of successful extensions: 47663
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 1851
Number of HSP's that attempted gapping in prelim test: 38857
Number of HSP's gapped (non-prelim): 7272
length of query: 544
length of database: 191,569,459
effective HSP length: 122
effective length of query: 422
effective length of database: 125,736,307
effective search space: 53060721554
effective search space used: 53060721554
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 64 (29.3 bits)