Query 009068
Match_columns 544
No_of_seqs 195 out of 633
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 18:06:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009068.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009068hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1oxz_A ADP-ribosylation factor 99.9 1.7E-26 5.9E-31 220.8 9.4 133 98-231 42-184 (186)
2 1o3x_A ADP-ribosylation factor 99.9 3.5E-24 1.2E-28 196.7 13.3 113 98-210 17-139 (140)
3 1naf_A ADP-ribosylation factor 99.9 2.8E-24 9.5E-29 200.9 10.4 116 98-213 26-151 (158)
4 1wrd_A TOM1, target of MYB pro 99.9 3.1E-22 1.1E-26 175.1 9.8 89 121-209 10-98 (103)
5 1x5b_A Signal transducing adap 99.8 1E-21 3.5E-26 183.8 8.7 79 1-80 79-157 (163)
6 1juq_A ADP-ribosylation factor 99.8 1.6E-21 5.4E-26 183.9 8.6 86 1-91 77-169 (171)
7 1wr6_A ADP-ribosylation factor 99.8 1.1E-21 3.8E-26 173.9 5.9 93 122-214 6-99 (111)
8 3ldz_A STAM-1, signal transduc 99.8 3.7E-21 1.3E-25 175.8 6.0 72 1-74 69-140 (140)
9 1mhq_A ADP-ribosylation factor 99.8 8.1E-21 2.8E-25 175.3 7.9 74 1-78 65-143 (148)
10 1elk_A Target of MYB1; superhe 99.8 1.4E-20 4.8E-25 174.9 7.0 74 1-75 81-157 (157)
11 3g2s_A C-terminal fragment of 99.8 1.8E-19 6.2E-24 166.7 7.2 68 1-72 75-147 (149)
12 3zyq_A Hepatocyte growth facto 99.8 1.3E-19 4.4E-24 177.2 6.5 78 1-79 72-149 (226)
13 3rru_A TOM1L1 protein; structu 99.7 6.7E-19 2.3E-23 163.5 3.4 69 1-70 81-152 (152)
14 1dvp_A HRS, hepatocyte growth 99.7 1.1E-17 3.9E-22 162.2 7.7 83 1-85 69-151 (220)
15 2pjw_H Uncharacterized protein 97.7 4.2E-05 1.4E-09 65.3 5.7 77 129-207 8-86 (88)
16 3f1i_S STAM-1, signal transduc 97.6 0.00044 1.5E-08 57.6 10.0 73 130-205 4-76 (77)
17 2pjw_V Vacuolar protein sortin 97.5 0.00044 1.5E-08 59.4 9.1 74 131-206 9-83 (91)
18 1sz9_A PCF11 protein; RNA poly 94.2 0.041 1.4E-06 50.2 4.6 67 2-70 71-139 (144)
19 3f1i_H Hepatocyte growth facto 92.1 0.64 2.2E-05 40.2 8.5 77 125-203 5-81 (98)
20 3iot_A Maltose-binding protein 76.0 0.58 2E-05 48.1 0.2 12 63-74 67-78 (449)
21 4flb_A Regulation of nuclear P 63.3 1.5 5E-05 38.6 -0.1 46 2-48 68-113 (132)
22 3iot_A Maltose-binding protein 57.6 2.2 7.4E-05 43.8 0.0 14 191-204 186-199 (449)
23 1hs7_A Syntaxin VAM3; UP-and-D 48.1 78 0.0027 27.1 8.2 81 126-207 12-94 (97)
24 3d9j_A RNA-binding protein 16; 45.4 22 0.00076 32.0 4.6 61 2-68 70-137 (145)
25 1fad_A Protein (FADD protein); 39.7 10 0.00036 31.5 1.4 35 32-70 51-85 (99)
26 2lig_A Aspartate receptor; che 39.2 88 0.003 25.9 7.3 53 151-203 91-147 (164)
27 2l7a_A Talin-1; vinculin, bund 34.3 93 0.0032 28.0 6.8 49 151-199 68-123 (131)
28 1x4t_A Hypothetical protein LO 32.9 48 0.0016 28.4 4.4 37 161-200 24-68 (92)
29 2c0s_A Conserved domain protei 32.1 1E+02 0.0035 24.4 6.0 47 157-207 4-52 (64)
30 2of5_A Death domain-containing 31.8 18 0.00061 31.6 1.7 36 32-71 61-96 (114)
31 2o71_A Death domain-containing 31.2 15 0.00053 32.0 1.2 36 32-71 61-96 (115)
32 4ani_A Protein GRPE; chaperone 30.3 2.3E+02 0.0078 27.4 9.3 41 158-198 84-127 (213)
33 2p6v_A Transcription initiatio 30.1 52 0.0018 29.1 4.3 32 16-47 23-55 (114)
34 2dnx_A Syntaxin-12; snare, HAB 29.9 2.7E+02 0.0092 24.4 9.1 81 124-204 21-111 (130)
35 4fu3_A Regulation of nuclear P 29.6 7.5 0.00026 33.9 -1.1 17 31-47 97-113 (135)
36 3ezq_B Protein FADD; apoptosis 29.4 23 0.0008 31.3 2.0 34 33-70 44-77 (122)
37 3ay5_A Cyclin-D1-binding prote 28.3 2.3E+02 0.008 29.1 9.6 69 130-202 252-324 (360)
38 2olt_A Hypothetical protein; s 28.1 2.1E+02 0.0072 26.6 8.6 55 123-177 20-76 (227)
39 1s94_A S-syntaxin; three helix 26.3 3.6E+02 0.012 24.3 9.6 90 114-205 41-147 (180)
40 3f4m_A Tumor necrosis factor, 26.2 2.1E+02 0.0071 26.7 7.9 54 147-200 55-111 (161)
41 2bzb_A Conserved domain protei 25.7 1.1E+02 0.0036 24.2 5.0 45 157-205 4-50 (62)
42 1wxp_A THO complex subunit 1; 24.0 26 0.00088 30.0 1.3 36 32-71 54-89 (110)
43 1i5n_A Chemotaxis protein CHEA 22.9 3.9E+02 0.013 23.5 11.0 76 123-201 10-106 (146)
44 1vf6_C Maguk P55 subfamily mem 22.2 46 0.0016 27.1 2.3 51 152-204 12-62 (72)
45 2d4u_A Methyl-accepting chemot 20.7 3.9E+02 0.013 22.7 9.6 52 152-203 98-153 (176)
46 3duz_A GP67, major envelope gl 20.6 2E+02 0.0068 30.7 7.2 33 156-188 300-334 (487)
47 2yqf_A Ankyrin-1; death domain 20.2 38 0.0013 28.9 1.5 36 32-71 55-90 (111)
No 1
>1oxz_A ADP-ribosylation factor binding protein GGA1; GAT domain, membrane protein; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=99.93 E-value=1.7e-26 Score=220.80 Aligned_cols=133 Identities=18% Similarity=0.334 Sum_probs=102.0
Q ss_pred cccCCCC--CCcccccchhhHHHhh------hhHHHHHHHHHHHHHHHHHHHhhCCCCcccc-hhHHHHHHHHHHHHHHH
Q 009068 98 ASYGMPS--NSSRRLDETMATEVET------LSFSSLDSMRDVMELLSDMLQAVNPSDREAV-KDEVIVDLVSRCRSNQK 168 (544)
Q Consensus 98 ~~~gsP~--qeAnrLiKsM~~E~ek------ls~sELe~V~~nveLLnEML~~~nP~d~~~~-ddElI~EL~eqCKsmQp 168 (544)
+++|.|+ ++||+|||.|+++.+. .+.+||++|++|++||+|||++++|++.... ++|+|+|||++||+||+
T Consensus 42 irs~~PeDL~~AN~LiK~m~~~d~~r~e~~~k~~~eLe~V~~nv~LL~EML~~~~pg~~~~~~d~Ell~eL~~~Ck~~qp 121 (186)
T 1oxz_A 42 LKSSHPEDLRAANKLIKEMVQEDQKRMEKISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQRCERMRP 121 (186)
T ss_dssp HSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCSCTTTTHHHHHHHHHHHHHHHH
T ss_pred hcCCChhhHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccccHHHHHHHHHHHHHHHH
Confidence 6789998 4899999999975332 2478999999999999999999999998877 89999999999999999
Q ss_pred HHHHHhhhc-CCHHHHHHhhhhhHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCcchhccccCCC
Q 009068 169 KLMQMLTTT-GDEELLGRGLELNDILQNLLAKHDAIASGLPIPTEVTNLSPKPNEACAASSLKS 231 (544)
Q Consensus 169 rI~rLIeet-dDEElL~eLL~LNDeLn~aL~rYd~L~sG~~~~~e~~~~s~~~~~~~~l~d~~~ 231 (544)
||++||+++ +||++|+++|++||+|++||.+|+++++|+...++... +..|...++|+|+..
T Consensus 122 ~i~~Li~e~~ddee~L~elL~~ND~Ln~vl~kY~~~~~g~~~~~~~~~-~~~~~~~~~l~dl~~ 184 (186)
T 1oxz_A 122 TLFRLASDTEDNDEALAEILQANDNLTQVINLYKQLVRGEEVNGDATA-GSIPGSTSALLDLSG 184 (186)
T ss_dssp HHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHTTHHHHCC-----------------------
T ss_pred HHHHHHHHccCCHHHHHHHHHhhHHHHHHHHHHHHHhcCCCCCccccC-CCCCCCcccccCCcC
Confidence 999999987 78999999999999999999999999999998877643 223444566777654
No 2
>1o3x_A ADP-ribosylation factor binding protein GGA1; protein transport; 2.10A {Homo sapiens} SCOP: a.7.8.1 PDB: 1nwm_X 1x79_A
Probab=99.91 E-value=3.5e-24 Score=196.74 Aligned_cols=113 Identities=18% Similarity=0.346 Sum_probs=96.0
Q ss_pred cccCCCC--CCcccccchhhHHHhh------hhHHHHHHHHHHHHHHHHHHHhhCCCCcccc-hhHHHHHHHHHHHHHHH
Q 009068 98 ASYGMPS--NSSRRLDETMATEVET------LSFSSLDSMRDVMELLSDMLQAVNPSDREAV-KDEVIVDLVSRCRSNQK 168 (544)
Q Consensus 98 ~~~gsP~--qeAnrLiKsM~~E~ek------ls~sELe~V~~nveLLnEML~~~nP~d~~~~-ddElI~EL~eqCKsmQp 168 (544)
++++.|. ++||+|||.|+++.++ ....+|++|+++++||+|||.+++|++.... ++|+|+|||++||+||+
T Consensus 17 irs~~P~DL~~AN~LiK~m~~~d~~r~e~~~k~~~eLe~v~~n~~LL~EML~~~~p~~~~~~~d~Ell~eL~~~ck~~qp 96 (140)
T 1o3x_A 17 LKSSHPEDLRAANKLIKEMVQEDQKRMEKISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQRCERMRP 96 (140)
T ss_dssp ----------CCCSSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCChhhHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccHHHHHHHHHHHHHHHH
Confidence 6788998 5899999999975332 2478999999999999999999999998877 89999999999999999
Q ss_pred HHHHHhhhc-CCHHHHHHhhhhhHHHHHHHHHHHHHhcCCCCC
Q 009068 169 KLMQMLTTT-GDEELLGRGLELNDILQNLLAKHDAIASGLPIP 210 (544)
Q Consensus 169 rI~rLIeet-dDEElL~eLL~LNDeLn~aL~rYd~L~sG~~~~ 210 (544)
||++||+++ +||++|+++|++||+|++||.+|+.+++|.++.
T Consensus 97 ~i~~li~e~~ddee~l~elL~~ND~ln~vl~kY~~~~~g~~~~ 139 (140)
T 1o3x_A 97 TLFRLASDTEDNDEALAEILQANDNLTQVINLYKQLVRGEEVN 139 (140)
T ss_dssp HHHHHHTTCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC-
T ss_pred HHHHHHHHccCCHHHHHHHHHhhHHHHHHHHHHHHHhcCCCCC
Confidence 999999987 689999999999999999999999999998764
No 3
>1naf_A ADP-ribosylation factor binding protein GGA1, golgi-localized, gamma EAR-; clathrin-adaptor, GAT domain, helical paper-CLIP, three-helix bundle; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=99.90 E-value=2.8e-24 Score=200.89 Aligned_cols=116 Identities=17% Similarity=0.342 Sum_probs=95.0
Q ss_pred cccCCCC--CCcccccchhhHHHhh------hhHHHHHHHHHHHHHHHHHHHhhCCCCcccc-hhHHHHHHHHHHHHHHH
Q 009068 98 ASYGMPS--NSSRRLDETMATEVET------LSFSSLDSMRDVMELLSDMLQAVNPSDREAV-KDEVIVDLVSRCRSNQK 168 (544)
Q Consensus 98 ~~~gsP~--qeAnrLiKsM~~E~ek------ls~sELe~V~~nveLLnEML~~~nP~d~~~~-ddElI~EL~eqCKsmQp 168 (544)
++++.|+ ++||+|||.|+++.++ ...+||++|++|++||+|||++++|++.... ++|+|+|||++||+||+
T Consensus 26 irs~~PeDL~~AN~LiK~m~~~d~~r~e~~~k~~seLe~V~~nv~LL~EML~~~~pg~~~~~~d~Ell~eL~~~Ck~~qp 105 (158)
T 1naf_A 26 LKSSHPEDLRAANKLIKEMVQEDQKRMEKISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQRCERMRP 105 (158)
T ss_dssp HSSCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-----CCTTHHHHHHHHHHTHHH
T ss_pred HhcCChhhHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcccHHHHHHHHHHHHHHHH
Confidence 6789998 4899999999975432 2478999999999999999999999988877 89999999999999999
Q ss_pred HHHHHhhhc-CCHHHHHHhhhhhHHHHHHHHHHHHHhcCCCCCCCC
Q 009068 169 KLMQMLTTT-GDEELLGRGLELNDILQNLLAKHDAIASGLPIPTEV 213 (544)
Q Consensus 169 rI~rLIeet-dDEElL~eLL~LNDeLn~aL~rYd~L~sG~~~~~e~ 213 (544)
||++||+++ +||++|+++|++||+|++||.+|+.+++|...+++.
T Consensus 106 ~i~~Li~e~~ddee~L~elL~~ND~Ln~vl~kY~~~~~g~~~~~~~ 151 (158)
T 1naf_A 106 TLFRLASDTEDNDEALAEILQANDNLTQVINLYKQLVRGEEVNGDA 151 (158)
T ss_dssp HHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHccCCHHHHHHHHHhhHHHHHHHHHHHHHhcCCCCCCcc
Confidence 999999987 689999999999999999999999999999877654
No 4
>1wrd_A TOM1, target of MYB protein 1; three-helix bundle, ubiquitin-binding protein, protein trans signaling protein complex; 1.75A {Homo sapiens} SCOP: a.7.8.1
Probab=99.87 E-value=3.1e-22 Score=175.06 Aligned_cols=89 Identities=22% Similarity=0.371 Sum_probs=84.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhCCCCcccchhHHHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHhhhhhHHHHHHHHHH
Q 009068 121 LSFSSLDSMRDVMELLSDMLQAVNPSDREAVKDEVIVDLVSRCRSNQKKLMQMLTTTGDEELLGRGLELNDILQNLLAKH 200 (544)
Q Consensus 121 ls~sELe~V~~nveLLnEML~~~nP~d~~~~ddElI~EL~eqCKsmQprI~rLIeetdDEElL~eLL~LNDeLn~aL~rY 200 (544)
+..+||++|++|++||+|||++++|+++...++|+|+|||++||+||+||++||+.++||++|+++|++||+|+++|.+|
T Consensus 10 k~~~el~~v~~n~~lL~EML~~~~p~~~~~~~~el~~eL~~~c~~~qp~i~~li~~~~dee~l~~lL~~ND~L~~vl~ry 89 (103)
T 1wrd_A 10 KLRSELEMVSGNVRVMSEMLTELVPTQAEPADLELLQELNRTCRAMQQRVLELIPQIANEQLTEELLIVNDNLNNVFLRH 89 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHhhHHHHHHHHHH
Confidence 34899999999999999999999999988889999999999999999999999998899999999999999999999999
Q ss_pred HHHhcCCCC
Q 009068 201 DAIASGLPI 209 (544)
Q Consensus 201 d~L~sG~~~ 209 (544)
++|++|...
T Consensus 90 ~~~~~~~~~ 98 (103)
T 1wrd_A 90 ERFERFRTG 98 (103)
T ss_dssp HHHHHHHCC
T ss_pred HHHhcCCCC
Confidence 999988753
No 5
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=99.85 E-value=1e-21 Score=183.83 Aligned_cols=79 Identities=22% Similarity=0.471 Sum_probs=74.8
Q ss_pred CcccchHHHHHHhcChHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhhcCccCCCCCCCC
Q 009068 1 MVKNCGDFVHFQIAERNVLGEMVKIVKKKPDMQLRDKILVLLDSWQEAFGGPGGKHPQYYWAYEDLRRYGVQFPKRSPDA 80 (544)
Q Consensus 1 cVKNCG~~FH~EIaskeFLneLvKLv~~k~d~~VKeKILeLIqsWaeaF~~~p~klp~i~~aY~~LK~eGv~FP~~~~da 80 (544)
||||||.+||.||++++||++|++|++++++..||+|||+||+.|+++|+++++ +..|.++|++||++||+||..+.++
T Consensus 79 ~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~f~~~~~-l~~i~~~Y~~Lk~~G~~FP~~~~~~ 157 (163)
T 1x5b_A 79 CVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEFQKDPQ-FSLISATIKSMKEEGITFPPAGSQT 157 (163)
T ss_dssp HHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTTCST-THHHHHHHHHHHTTTCCCCCCSSCC
T ss_pred HHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcCCcc-cHHHHHHHHHHHHcCCCCCCCCCCC
Confidence 899999999999999999999999999888999999999999999999999874 8999999999999999999987654
No 6
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=99.84 E-value=1.6e-21 Score=183.94 Aligned_cols=86 Identities=29% Similarity=0.505 Sum_probs=71.9
Q ss_pred CcccchHHHHHHhcChHHHHHHHHhhcCC-----CCHHHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhhcCccC--
Q 009068 1 MVKNCGDFVHFQIAERNVLGEMVKIVKKK-----PDMQLRDKILVLLDSWQEAFGGPGGKHPQYYWAYEDLRRYGVQF-- 73 (544)
Q Consensus 1 cVKNCG~~FH~EIaskeFLneLvKLv~~k-----~d~~VKeKILeLIqsWaeaF~~~p~klp~i~~aY~~LK~eGv~F-- 73 (544)
||||||.+||.||++++||++|+++++++ ++.+||+|||+||+.|+++|++ +++|.++|++||++||.|
T Consensus 77 ~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~----~~~i~~~y~~Lk~~G~~f~~ 152 (171)
T 1juq_A 77 CMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMALPE----EAKIKDAYHMLKRQGIVQSD 152 (171)
T ss_dssp HHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHTTSCSSC
T ss_pred HHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHcCC----CcHHHHHHHHHHHCCCCCCC
Confidence 89999999999999999999999999865 4689999999999999999984 578999999999999988
Q ss_pred CCCCCCCCCCCCCCCCCC
Q 009068 74 PKRSPDAAPIFTPPVSHP 91 (544)
Q Consensus 74 P~~~~daaPV~TPp~t~p 91 (544)
|....+. ++|+||.+++
T Consensus 153 P~~~~~~-~~f~~p~~~~ 169 (171)
T 1juq_A 153 PPIPVDR-TLIPSPPPRP 169 (171)
T ss_dssp CCBCCCT-TCC-------
T ss_pred CCCCccc-cCCCCCCCCC
Confidence 8877654 6899887654
No 7
>1wr6_A ADP-ribosylation factor binding protein GGA3; three-helix bundle, clathrin coat adaptor protein, protein transport/signaling protein complex; 2.60A {Homo sapiens} SCOP: a.7.8.1 PDB: 1yd8_G
Probab=99.84 E-value=1.1e-21 Score=173.85 Aligned_cols=93 Identities=24% Similarity=0.432 Sum_probs=82.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhCCCCcccchhHHHHHHHHHHHHHHHHHHHHhhhc-CCHHHHHHhhhhhHHHHHHHHHH
Q 009068 122 SFSSLDSMRDVMELLSDMLQAVNPSDREAVKDEVIVDLVSRCRSNQKKLMQMLTTT-GDEELLGRGLELNDILQNLLAKH 200 (544)
Q Consensus 122 s~sELe~V~~nveLLnEML~~~nP~d~~~~ddElI~EL~eqCKsmQprI~rLIeet-dDEElL~eLL~LNDeLn~aL~rY 200 (544)
+.+||++|++|++||+|||.+++|++....+.|+|+|||.+||+|||||++||+++ +||++|++||++||+|+++|.+|
T Consensus 6 ~~~eLe~V~~n~~LL~EML~~~~pg~~~~~d~ell~ELy~~ck~~qp~i~kL~~e~~ddde~l~elL~~ND~ln~vi~rY 85 (111)
T 1wr6_A 6 RLHTLEEVNNNVRLLSEMLLHYSQEDSSDGDRELMKELFDQCENKRRTLFKLASETEDNDNSLGDILQASDNLSRVINSY 85 (111)
T ss_dssp CCCCHHHHHHHHHHHHHHTTTCCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCSSHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHhHHHHHHHHHH
Confidence 36899999999999999999999999888889999999999999999999999887 68999999999999999999999
Q ss_pred HHHhcCCCCCCCCC
Q 009068 201 DAIASGLPIPTEVT 214 (544)
Q Consensus 201 d~L~sG~~~~~e~~ 214 (544)
+++++|+.++++..
T Consensus 86 ~~~~~g~~~~~~~~ 99 (111)
T 1wr6_A 86 KTIIEGQVINGEVA 99 (111)
T ss_dssp HHTTTCC-------
T ss_pred HHHhcCCCCCCccc
Confidence 99999999877653
No 8
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=99.82 E-value=3.7e-21 Score=175.79 Aligned_cols=72 Identities=24% Similarity=0.513 Sum_probs=68.5
Q ss_pred CcccchHHHHHHhcChHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhhcCccCC
Q 009068 1 MVKNCGDFVHFQIAERNVLGEMVKIVKKKPDMQLRDKILVLLDSWQEAFGGPGGKHPQYYWAYEDLRRYGVQFP 74 (544)
Q Consensus 1 cVKNCG~~FH~EIaskeFLneLvKLv~~k~d~~VKeKILeLIqsWaeaF~~~p~klp~i~~aY~~LK~eGv~FP 74 (544)
||||||.+||.||++++||++|+++++ +++..||+|||+||++|+++|+++++ +..|.++|++||++||+||
T Consensus 69 ~vkNcG~~f~~evas~~Fl~el~~l~~-~~~~~Vk~kil~li~~W~~~f~~~~~-l~~i~~~Y~~Lk~~G~~FP 140 (140)
T 3ldz_A 69 CVSNCGKIFHLEVCSRDFASEVSNVLN-KGHPKVCEKLKALMVEWTDEFKNDPQ-LSLISAMIKNLKEQGVTFP 140 (140)
T ss_dssp HHHHSCHHHHHHHSSHHHHHHHHHHHH-HSCHHHHHHHHHHHHHHHHHHTTCGG-GTHHHHHHHHHHHTTCCCC
T ss_pred HHHhcCHHHHHHHhhHHHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHHhCCCCC-chHHHHHHHHHHHccCcCc
Confidence 899999999999999999999999996 46899999999999999999999874 8999999999999999998
No 9
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=99.82 E-value=8.1e-21 Score=175.32 Aligned_cols=74 Identities=22% Similarity=0.411 Sum_probs=68.6
Q ss_pred CcccchHHHHHHhcChHHHHHHHHhhcCC-----CCHHHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhhcCccCCC
Q 009068 1 MVKNCGDFVHFQIAERNVLGEMVKIVKKK-----PDMQLRDKILVLLDSWQEAFGGPGGKHPQYYWAYEDLRRYGVQFPK 75 (544)
Q Consensus 1 cVKNCG~~FH~EIaskeFLneLvKLv~~k-----~d~~VKeKILeLIqsWaeaF~~~p~klp~i~~aY~~LK~eGv~FP~ 75 (544)
||||||.+||.|||+++||++|+++++++ ++..||+|||+||+.|+++|++ .+.|.++|++||++||.||.
T Consensus 65 ~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~----~p~i~~~y~~Lk~~G~~Fp~ 140 (148)
T 1mhq_A 65 CMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVWFPE----DIKIRDAYQMLKKQGIIKQD 140 (148)
T ss_dssp HHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHTTSSCSC
T ss_pred HHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHHcCC----CchHHHHHHHHHHcCCCCCC
Confidence 89999999999999999999999999864 5789999999999999999985 57799999999999999998
Q ss_pred CCC
Q 009068 76 RSP 78 (544)
Q Consensus 76 ~~~ 78 (544)
.+.
T Consensus 141 ~~~ 143 (148)
T 1mhq_A 141 PKL 143 (148)
T ss_dssp CCC
T ss_pred CCC
Confidence 764
No 10
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=99.81 E-value=1.4e-20 Score=174.93 Aligned_cols=74 Identities=35% Similarity=0.626 Sum_probs=69.0
Q ss_pred CcccchHHHHHHhcChHHHHH-HHHhhcCCC--CHHHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhhcCccCCC
Q 009068 1 MVKNCGDFVHFQIAERNVLGE-MVKIVKKKP--DMQLRDKILVLLDSWQEAFGGPGGKHPQYYWAYEDLRRYGVQFPK 75 (544)
Q Consensus 1 cVKNCG~~FH~EIaskeFLne-LvKLv~~k~--d~~VKeKILeLIqsWaeaF~~~p~klp~i~~aY~~LK~eGv~FP~ 75 (544)
||||||.+||.||++++||++ |+|++.+++ +..||+|||+||+.|+++|+++++ +..|.++|++||++||+||.
T Consensus 81 ~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~~f~~~p~-l~~i~~~Y~~Lk~~G~~FP~ 157 (157)
T 1elk_A 81 CVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWADAFRSSPD-LTGVVTIYEDLRRKGLEFPM 157 (157)
T ss_dssp HHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTCCCCC
T ss_pred HHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHcCCCcc-hHHHHHHHHHHHHcCCCCCC
Confidence 899999999999999999999 899997654 469999999999999999998875 99999999999999999994
No 11
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=99.78 E-value=1.8e-19 Score=166.74 Aligned_cols=68 Identities=29% Similarity=0.517 Sum_probs=63.8
Q ss_pred CcccchHHHHHHhcChHHHHHHHHhhcCC-----CCHHHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhhcCcc
Q 009068 1 MVKNCGDFVHFQIAERNVLGEMVKIVKKK-----PDMQLRDKILVLLDSWQEAFGGPGGKHPQYYWAYEDLRRYGVQ 72 (544)
Q Consensus 1 cVKNCG~~FH~EIaskeFLneLvKLv~~k-----~d~~VKeKILeLIqsWaeaF~~~p~klp~i~~aY~~LK~eGv~ 72 (544)
||||||.+||.||++++||++|+|+++++ .+..||+|||+||++|+++|++ .++|.++|++||++||.
T Consensus 75 cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~----~p~i~~~Y~~Lk~~Giv 147 (149)
T 3g2s_A 75 CMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGLPE----EVKIAEAYQMLKKQGIV 147 (149)
T ss_dssp HHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHTTCC
T ss_pred HHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHHhCC----CchHHHHHHHHHHCcCc
Confidence 89999999999999999999999999875 5789999999999999999984 57899999999999986
No 12
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=99.78 E-value=1.3e-19 Score=177.22 Aligned_cols=78 Identities=29% Similarity=0.557 Sum_probs=73.6
Q ss_pred CcccchHHHHHHhcChHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhhcCccCCCCCCC
Q 009068 1 MVKNCGDFVHFQIAERNVLGEMVKIVKKKPDMQLRDKILVLLDSWQEAFGGPGGKHPQYYWAYEDLRRYGVQFPKRSPD 79 (544)
Q Consensus 1 cVKNCG~~FH~EIaskeFLneLvKLv~~k~d~~VKeKILeLIqsWaeaF~~~p~klp~i~~aY~~LK~eGv~FP~~~~d 79 (544)
||||||.+||.||++++||++|++|++++++..||+|||+||+.|+++|++++ +|..|.++|++||++||+||..++.
T Consensus 72 ~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~~-~l~~i~~~Y~~Lk~~G~~FP~~~~~ 149 (226)
T 3zyq_A 72 VVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHAFRNEP-KYKVVQDTYQIMKVEGHVFPEFKES 149 (226)
T ss_dssp HHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTTTCG-GGHHHHHHHHHHHHHTCCCCCCCGG
T ss_pred HHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCCCc-chHHHHHHHHHHHhcCCCcccchhH
Confidence 79999999999999999999999999888899999999999999999999986 4899999999999999999987644
No 13
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=99.73 E-value=6.7e-19 Score=163.47 Aligned_cols=69 Identities=25% Similarity=0.516 Sum_probs=63.7
Q ss_pred CcccchHHHHHHhcChHHHHH-HHHhhcCCC--CHHHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhhcC
Q 009068 1 MVKNCGDFVHFQIAERNVLGE-MVKIVKKKP--DMQLRDKILVLLDSWQEAFGGPGGKHPQYYWAYEDLRRYG 70 (544)
Q Consensus 1 cVKNCG~~FH~EIaskeFLne-LvKLv~~k~--d~~VKeKILeLIqsWaeaF~~~p~klp~i~~aY~~LK~eG 70 (544)
||||||.+||.||++++||++ |+|++++++ +..||+|||+||++|+++|+++++ +..|.++|++||++|
T Consensus 81 cvkNCG~~fh~eiask~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa~~F~~~p~-l~~i~~~Y~~Lk~~G 152 (152)
T 3rru_A 81 CVQNCGPSFQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRILNFIKTWSQGFPGGVD-VSEVKEVYLDLVKKG 152 (152)
T ss_dssp HHHHSCHHHHHHHSSHHHHTTTTGGGGSGGGCCCHHHHHHHHHHHHHHHTCCSSSCC-CHHHHHHHHHHHHC-
T ss_pred HHHhcCHHHHHHHHhhHhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHhCCCCc-chHHHHHHHHHHHCc
Confidence 899999999999999999998 899998763 568999999999999999999884 999999999999998
No 14
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=99.70 E-value=1.1e-17 Score=162.19 Aligned_cols=83 Identities=25% Similarity=0.425 Sum_probs=74.3
Q ss_pred CcccchHHHHHHhcChHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhhcCccCCCCCCCC
Q 009068 1 MVKNCGDFVHFQIAERNVLGEMVKIVKKKPDMQLRDKILVLLDSWQEAFGGPGGKHPQYYWAYEDLRRYGVQFPKRSPDA 80 (544)
Q Consensus 1 cVKNCG~~FH~EIaskeFLneLvKLv~~k~d~~VKeKILeLIqsWaeaF~~~p~klp~i~~aY~~LK~eGv~FP~~~~da 80 (544)
||||||.+||.||++++||++|++++++..+.+||+|||+||+.|+++|++++. +..|.++|+.|+++|+.||...++.
T Consensus 69 ~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~~~-~~~i~~~y~~Lk~~G~~FP~~~e~~ 147 (220)
T 1dvp_A 69 IVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYAFRSSDK-YQAIKDTMTILKAKGHTFPELREAD 147 (220)
T ss_dssp HHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHTTTCSS-CCHHHHHHHHHHHTTCCCCCCCC--
T ss_pred HHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccchH-HHHHHHHHHHHhhcCcccccccccc
Confidence 799999999999999999999999998877899999999999999999999874 8999999999999999999875443
Q ss_pred CCCCC
Q 009068 81 APIFT 85 (544)
Q Consensus 81 aPV~T 85 (544)
++++
T Consensus 148 -a~f~ 151 (220)
T 1dvp_A 148 -AMFT 151 (220)
T ss_dssp --CCC
T ss_pred -cccc
Confidence 3554
No 15
>2pjw_H Uncharacterized protein YHL002W; GAT domain, core complex, doamin SWAP, endocytosis/exocytosis complex; 3.01A {Saccharomyces cerevisiae}
Probab=97.70 E-value=4.2e-05 Score=65.28 Aligned_cols=77 Identities=18% Similarity=0.264 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHhhCCCC--cccchhHHHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHhhhhhHHHHHHHHHHHHHhcC
Q 009068 129 MRDVMELLSDMLQAVNPSD--REAVKDEVIVDLVSRCRSNQKKLMQMLTTTGDEELLGRGLELNDILQNLLAKHDAIASG 206 (544)
Q Consensus 129 V~~nveLLnEML~~~nP~d--~~~~ddElI~EL~eqCKsmQprI~rLIeetdDEElL~eLL~LNDeLn~aL~rYd~L~sG 206 (544)
-..+|+.|.++|...+|.. ....+++-|++||.+|-.+||+|.++|....... .+|+.+|+.|.++...|+.|...
T Consensus 8 q~~~vd~Ll~~L~~~~p~~~~~~~~~d~eiq~LY~~v~~lRPkL~~li~kysqKk--~eL~~Ln~kl~~a~~~Yd~lle~ 85 (88)
T 2pjw_H 8 QKTTIDQLHNSLNAASKTGNSNEVLQDPHIGDMYGSVTPLRPQVTRMLGKYAKEK--EDMLSLRQVLANAERSYNQLMDR 85 (88)
T ss_dssp THHHHHHHHHHHHHHHTTCCTHHHHSCHHHHHHHHHHTTHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHhhHHHHHHHHhcCCCCCchhhhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3468899999999987733 2556788899999999999999999999985442 47899999999999999999854
Q ss_pred C
Q 009068 207 L 207 (544)
Q Consensus 207 ~ 207 (544)
.
T Consensus 86 s 86 (88)
T 2pjw_H 86 A 86 (88)
T ss_dssp T
T ss_pred h
Confidence 3
No 16
>3f1i_S STAM-1, signal transducing adapter molecule 1; HGS, ESCRT, ubiquitin, MVB, endosome, membrane, metal- phosphoprotein, protein transport, transport; 2.30A {Homo sapiens}
Probab=97.59 E-value=0.00044 Score=57.65 Aligned_cols=73 Identities=23% Similarity=0.276 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHhhCCCCcccchhHHHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHhhhhhHHHHHHHHHHHHHhc
Q 009068 130 RDVMELLSDMLQAVNPSDREAVKDEVIVDLVSRCRSNQKKLMQMLTTTGDEELLGRGLELNDILQNLLAKHDAIAS 205 (544)
Q Consensus 130 ~~nveLLnEML~~~nP~d~~~~ddElI~EL~eqCKsmQprI~rLIeetdDEElL~eLL~LNDeLn~aL~rYd~L~s 205 (544)
+.+|+.+..+|+.++|.+...+..|++ +|-+.|.+|-+.|-.-++.++.. ..+|-++|.+|..+|..|+.+++
T Consensus 4 E~kmd~~L~~l~~aDP~~~~~D~~el~-~LE~~c~~MgplId~kLE~iDrk--h~~Lteln~~~leaL~lY~~lM~ 76 (77)
T 3f1i_S 4 EDKMDQLLQMLQSTDPSDDQPDLPELL-HLEAMCHQMGPLIDEKLEDIDRK--HSELSELNVKVMEALSLYTKLMN 76 (77)
T ss_dssp HHHHHHHHHHHHTCCTTSCCCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCCCCCCcHHHH-HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhc
Confidence 357888889999999998877777877 99999999999999999999544 67999999999999999999985
No 17
>2pjw_V Vacuolar protein sorting-associated protein 27; GAT domain, core complex, doamin SWAP, endocytosis/exocytosis complex; 3.01A {Saccharomyces cerevisiae}
Probab=97.49 E-value=0.00044 Score=59.37 Aligned_cols=74 Identities=14% Similarity=0.284 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHhhCC-CCcccchhHHHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHhhhhhHHHHHHHHHHHHHhcC
Q 009068 131 DVMELLSDMLQAVNP-SDREAVKDEVIVDLVSRCRSNQKKLMQMLTTTGDEELLGRGLELNDILQNLLAKHDAIASG 206 (544)
Q Consensus 131 ~nveLLnEML~~~nP-~d~~~~ddElI~EL~eqCKsmQprI~rLIeetdDEElL~eLL~LNDeLn~aL~rYd~L~sG 206 (544)
+++.+|...++.+.. ......+++-|++||+++-.+||||.+.|++...- ..+++++|++|..+...||+|...
T Consensus 9 d~I~lF~~lv~~~k~~~~~~i~~d~~LqeLy~kv~~lRPKL~r~l~~~~~K--~~~L~~mn~Kls~a~rlYD~lLE~ 83 (91)
T 2pjw_V 9 DSIYMFASLVEKMKSRPLNEILEDSKLQNLAQRVFASKARLNYALNDKAQK--YNTLIEMNGKISEIMNIYDRLLEQ 83 (91)
T ss_dssp HHHHHHHHHHHHHHTCSCSTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcccccCCHHHHHHHHHHHhHhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666666655532 23445678999999999999999999999987332 358899999999999999999753
No 18
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=94.22 E-value=0.041 Score=50.23 Aligned_cols=67 Identities=12% Similarity=0.059 Sum_probs=43.8
Q ss_pred cccchHHHHHHhcChHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCCCCCc--hHHHHHHHHHhhcC
Q 009068 2 VKNCGDFVHFQIAERNVLGEMVKIVKKKPDMQLRDKILVLLDSWQEAFGGPGGKH--PQYYWAYEDLRRYG 70 (544)
Q Consensus 2 VKNCG~~FH~EIaskeFLneLvKLv~~k~d~~VKeKILeLIqsWaeaF~~~p~kl--p~i~~aY~~LK~eG 70 (544)
|||||..|+..++.. +.+.+...+. ..+..+|.|+..|+..|.+.|.+...-+ ..+...-+.|++.|
T Consensus 71 vkN~g~~y~~~F~~~-l~~~f~~~~~-~~d~~~r~k~~rL~~~W~~~~~~~~~vF~~~~l~~i~~~l~~a~ 139 (144)
T 1sz9_A 71 CKNVGSPYTIYFSRN-LFNLYKRTYL-LVDNTTRTKLINMFKLWLNPNDTGLPLFEGSALEKIEQFLIKAS 139 (144)
T ss_dssp HHHTCTTHHHHHHTT-HHHHHHHHHH-TSCHHHHHHHHHHHHHHTSGGGCSSCSSCHHHHHHHHHHHHHTT
T ss_pred HHhccchHHHHHHHH-HHHHHHHHHH-hCCHHHHHHHHHHHHHHhCcccCCCCCCCHHHHHHHHHHHHhhh
Confidence 799999998777752 3333333332 2478999999999999998865431223 33455555666544
No 19
>3f1i_H Hepatocyte growth factor-regulated tyrosine kinas substrate; HGS, ESCRT, ubiquitin, MVB, endosome, membrane, metal- phosphoprotein, protein transport, transport; 2.30A {Homo sapiens}
Probab=92.14 E-value=0.64 Score=40.20 Aligned_cols=77 Identities=13% Similarity=0.235 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCcccchhHHHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHhhhhhHHHHHHHHHHHHH
Q 009068 125 SLDSMRDVMELLSDMLQAVNPSDREAVKDEVIVDLVSRCRSNQKKLMQMLTTTGDEELLGRGLELNDILQNLLAKHDAI 203 (544)
Q Consensus 125 ELe~V~~nveLLnEML~~~nP~d~~~~ddElI~EL~eqCKsmQprI~rLIeetdDEElL~eLL~LNDeLn~aL~rYd~L 203 (544)
-++..+..+++|.+=+....-.......|..++.|+.++..|+++|+++|++.++.. ...=.|.|+|.++=+.-.+|
T Consensus 5 f~~~l~~sv~if~NRmksn~~RGrsi~nDssVQsLF~~lt~MH~~Ll~~i~~~ee~R--~~yE~LQDkL~qi~eAR~AL 81 (98)
T 3f1i_H 5 FLKALQNAVTTFVNRMKSNHMRGRSITNDSAVLSLFQSINGMHPQLLELLNQLDERR--LYYEGLQDKLAQIRDARGAL 81 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 366778888888876655443345567889999999999999999999999985544 45556678888776555444
No 20
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=76.03 E-value=0.58 Score=48.08 Aligned_cols=12 Identities=8% Similarity=0.207 Sum_probs=6.6
Q ss_pred HHHHhhcCccCC
Q 009068 63 YEDLRRYGVQFP 74 (544)
Q Consensus 63 Y~~LK~eGv~FP 74 (544)
+..+...|+..|
T Consensus 67 ~~~~~~~G~l~~ 78 (449)
T 3iot_A 67 FGGYAQSGLLAE 78 (449)
T ss_dssp HHHHHHTTCBCC
T ss_pred HHHHHhCCCccc
Confidence 445566676544
No 21
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=63.25 E-value=1.5 Score=38.58 Aligned_cols=46 Identities=9% Similarity=0.229 Sum_probs=28.0
Q ss_pred cccchHHHHHHhcChHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHH
Q 009068 2 VKNCGDFVHFQIAERNVLGEMVKIVKKKPDMQLRDKILVLLDSWQEA 48 (544)
Q Consensus 2 VKNCG~~FH~EIaskeFLneLvKLv~~k~d~~VKeKILeLIqsWaea 48 (544)
++||+.+...++. +.|-..|..++..-.++++|+||..||..|.+.
T Consensus 68 l~ns~~~~~~~f~-~~f~~~l~~~~~~~~~~~~~~kl~~ll~iW~~r 113 (132)
T 4flb_A 68 IQNCKRKNAIIFR-ESFADVLPEAAALVKDPSVSKSVERIFKIWEDR 113 (132)
T ss_dssp HHHTTTTTCTHHH-HHHHTTHHHHHHTTCSTTTHHHHHHHHHHHHHH
T ss_pred HHHhcccChHHHH-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC
Confidence 4667544322221 234344445554445678999999999999873
No 22
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=57.62 E-value=2.2 Score=43.81 Aligned_cols=14 Identities=7% Similarity=-0.259 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHh
Q 009068 191 DILQNLLAKHDAIA 204 (544)
Q Consensus 191 DeLn~aL~rYd~L~ 204 (544)
++..++|+.|..+.
T Consensus 186 ~~~~~al~~~~~l~ 199 (449)
T 3iot_A 186 AGAKAGLTFLVDLI 199 (449)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33444555554443
No 23
>1hs7_A Syntaxin VAM3; UP-and-DOWN three-helix bundle insertion preceding proline in AN alpha-helix, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=48.13 E-value=78 Score=27.12 Aligned_cols=81 Identities=15% Similarity=0.201 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHHHhhCC-CCcccchhHHHH-HHHHHHHHHHHHHHHHhhhcCCHHHHHHhhhhhHHHHHHHHHHHHH
Q 009068 126 LDSMRDVMELLSDMLQAVNP-SDREAVKDEVIV-DLVSRCRSNQKKLMQMLTTTGDEELLGRGLELNDILQNLLAKHDAI 203 (544)
Q Consensus 126 Le~V~~nveLLnEML~~~nP-~d~~~~ddElI~-EL~eqCKsmQprI~rLIeetdDEElL~eLL~LNDeLn~aL~rYd~L 203 (544)
|.....++..|.-|+..+-- .|.... -+-|. +|...|..|..+|-.|..--..|.++.++..+--+++.+-..|..-
T Consensus 12 i~t~s~niq~l~k~~~qlGTkrD~~~L-R~~l~~~l~~~~~~L~k~~~~l~~l~qkeRL~~dF~~l~~~fQ~~qr~y~ek 90 (97)
T 1hs7_A 12 IETFAEQSRVLEKECTKIGSKRDSKEL-RYKIETELIPNCTSVRDKIESNILIHQNGKLSADFKNLKTKYQSLQQSYNQR 90 (97)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSSCCHHH-HHHHHHTHHHHHHHHHHHHHHSTHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCcchHHH-HHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777788888888832 121111 23455 8888899999888865553347888888888888888888888776
Q ss_pred hcCC
Q 009068 204 ASGL 207 (544)
Q Consensus 204 ~sG~ 207 (544)
.+..
T Consensus 91 ~~e~ 94 (97)
T 1hs7_A 91 KSLF 94 (97)
T ss_dssp HHHS
T ss_pred Hhcc
Confidence 6544
No 24
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A
Probab=45.36 E-value=22 Score=31.98 Aligned_cols=61 Identities=13% Similarity=0.147 Sum_probs=38.0
Q ss_pred cccchHHHHH---HhcChHHHHHHHHhhcC--CCCHHHHHHHHHHHHHHHH--HhCCCCCCchHHHHHHHHHhh
Q 009068 2 VKNCGDFVHF---QIAERNVLGEMVKIVKK--KPDMQLRDKILVLLDSWQE--AFGGPGGKHPQYYWAYEDLRR 68 (544)
Q Consensus 2 VKNCG~~FH~---EIaskeFLneLvKLv~~--k~d~~VKeKILeLIqsWae--aF~~~p~klp~i~~aY~~LK~ 68 (544)
+|||+..... +++ ..|...|.+++.. +.+..+|.||..||..|.+ .|. -..+..+.+.|..
T Consensus 70 vrn~~~k~~~~~~~f~-~~F~~~L~~~f~~~~~~~~~~r~kl~rLl~iW~~r~vF~-----~~~l~~l~~~l~~ 137 (145)
T 3d9j_A 70 VRQSRHQFGQEKDVFA-PRFSNNIISTFQNLYRCPGDDKSKIVRVLNLWQKNNVFK-----SEIIQPLLDMAAA 137 (145)
T ss_dssp HHHHHHHHCTTTCSHH-HHHHHHHHHHHHHHTSSCGGGHHHHHHHHHHHHHTTSSC-----HHHHHHHHHHHHH
T ss_pred HHHhhhhcCCccccHH-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcCCCCCC-----HHHHHHHHHHhcC
Confidence 6788875421 111 4566777666532 3358999999999999985 443 2345555555543
No 25
>1fad_A Protein (FADD protein); apoptosis, death domain; NMR {Mus musculus} SCOP: a.77.1.2
Probab=39.66 E-value=10 Score=31.53 Aligned_cols=35 Identities=17% Similarity=0.202 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhhcC
Q 009068 32 MQLRDKILVLLDSWQEAFGGPGGKHPQYYWAYEDLRRYG 70 (544)
Q Consensus 32 ~~VKeKILeLIqsWaeaF~~~p~klp~i~~aY~~LK~eG 70 (544)
..+++++.+||..|....+. ...+..++..|++-|
T Consensus 51 ~d~~eq~~~mL~~W~~~~g~----~At~~~L~~AL~~~~ 85 (99)
T 1fad_A 51 RSLSERVRESLKVWKNAEKK----NASVAGLVKALRTCR 85 (99)
T ss_dssp SCHHHHHHHHHHHHHHHHGG----GGSHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhccCC----CCcHHHHHHHHHHCC
Confidence 46899999999999988753 355777888888765
No 26
>2lig_A Aspartate receptor; chemotaxis; HET: PHN; 2.00A {Salmonella typhimurium} SCOP: a.24.2.1 PDB: 1lih_A*
Probab=39.17 E-value=88 Score=25.86 Aligned_cols=53 Identities=11% Similarity=0.224 Sum_probs=28.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhc--CC-HHHHH-HhhhhhHHHHHHHHHHHHH
Q 009068 151 VKDEVIVDLVSRCRSNQKKLMQMLTTT--GD-EELLG-RGLELNDILQNLLAKHDAI 203 (544)
Q Consensus 151 ~ddElI~EL~eqCKsmQprI~rLIeet--dD-EElL~-eLL~LNDeLn~aL~rYd~L 203 (544)
.+.+++.++....+.+..-+.+++..+ ++ ++... .+-.+.+.+..++..|..+
T Consensus 91 ~~~~l~~~~~~~~~~y~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~ 147 (164)
T 2lig_A 91 AMAEASANVDEKYQRYQAALAELIQFLDNGNMDAYFAQPTQGMQNALGEALGNYARV 147 (164)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHhCchHHHHHHHHHHHHHHHHH
Confidence 355677777666666665555555443 22 33321 2334456666666666555
No 27
>2l7a_A Talin-1; vinculin, bundle, focal adhesion, integrin, cell ADHE; NMR {Mus musculus}
Probab=34.27 E-value=93 Score=28.02 Aligned_cols=49 Identities=18% Similarity=0.058 Sum_probs=40.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhc-------CCHHHHHHhhhhhHHHHHHHHH
Q 009068 151 VKDEVIVDLVSRCRSNQKKLMQMLTTT-------GDEELLGRGLELNDILQNLLAK 199 (544)
Q Consensus 151 ~ddElI~EL~eqCKsmQprI~rLIeet-------dDEElL~eLL~LNDeLn~aL~r 199 (544)
.+.+....|...+|.+..-+-+||+.. +|.+.-..|.+.+++|..+...
T Consensus 68 eDp~~~~rLl~AAk~La~At~~MVeaAK~~A~NP~d~~~q~~Lr~Aae~L~~at~~ 123 (131)
T 2l7a_A 68 SDLENSRKLLSAAKILADATAKMVEAAKGAAAHPDSEEQQQRLREAAEGLRMATNA 123 (131)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999999999853 5777778899999999876643
No 28
>1x4t_A Hypothetical protein LOC57905; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.2.15.1
Probab=32.90 E-value=48 Score=28.39 Aligned_cols=37 Identities=19% Similarity=0.276 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHhhh----c----CCHHHHHHhhhhhHHHHHHHHHH
Q 009068 161 SRCRSNQKKLMQMLTT----T----GDEELLGRGLELNDILQNLLAKH 200 (544)
Q Consensus 161 eqCKsmQprI~rLIee----t----dDEElL~eLL~LNDeLn~aL~rY 200 (544)
..|+..|..|++=|.. + =.| .++=+|||+||++|..=
T Consensus 24 ~~AekWR~qvikEIs~Kv~~Iqn~~L~E---~~IRdLNDEINkL~rEK 68 (92)
T 1x4t_A 24 PKAEKWRRQIIGEISKKVAQIQNAGLGE---FRIRDLNDEINKLLREK 68 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCSCH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCCCH---HHHHHHHHHHHHHHHHH
Confidence 4566666666655442 2 234 27789999999999753
No 29
>2c0s_A Conserved domain protein; transferase, phosphatase, phosphorylation, sporulation, antithetical, negative regulator, spine; NMR {Bacillus anthracis} SCOP: a.30.7.1
Probab=32.11 E-value=1e+02 Score=24.44 Aligned_cols=47 Identities=15% Similarity=0.222 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhc--CCHHHHHHhhhhhHHHHHHHHHHHHHhcCC
Q 009068 157 VDLVSRCRSNQKKLMQMLTTT--GDEELLGRGLELNDILQNLLAKHDAIASGL 207 (544)
Q Consensus 157 ~EL~eqCKsmQprI~rLIeet--dDEElL~eLL~LNDeLn~aL~rYd~L~sG~ 207 (544)
.+|....+..|.++++++... .++ +.|.+.-+|...|..|.++....
T Consensus 4 ~~L~~~IE~kR~eL~~l~~k~Gl~~~----~vI~~SQeLD~LIn~Y~k~~~~~ 52 (64)
T 2c0s_A 4 TKLNDRIEAKKKELIYLVEKYGFTHH----KVISFSQELDRLLNLLIELKTKK 52 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCTTSH----HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCH----HHHHHHHHHHHHHHHHHHHHHhh
Confidence 577788888999999999874 566 45788899999999999886443
No 30
>2of5_A Death domain-containing protein cradd; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=31.76 E-value=18 Score=31.62 Aligned_cols=36 Identities=17% Similarity=0.396 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhhcCc
Q 009068 32 MQLRDKILVLLDSWQEAFGGPGGKHPQYYWAYEDLRRYGV 71 (544)
Q Consensus 32 ~~VKeKILeLIqsWaeaF~~~p~klp~i~~aY~~LK~eGv 71 (544)
..+++++.+||..|.+..+. -..+..++..|++-|.
T Consensus 61 ~~l~eq~~qmL~~W~~r~G~----~AT~~~L~~AL~~~~l 96 (114)
T 2of5_A 61 HNVQSQVVEAFIRWRQRFGK----QATFQSLHNGLRAVEV 96 (114)
T ss_dssp SCHHHHHHHHHHHHHHHHGG----GCCHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHHHHCc----CcHHHHHHHHHHHcCC
Confidence 46889999999999998753 3456778888888774
No 31
>2o71_A Death domain-containing protein cradd; raidd, apoptosis; 2.00A {Homo sapiens}
Probab=31.20 E-value=15 Score=32.05 Aligned_cols=36 Identities=17% Similarity=0.396 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhhcCc
Q 009068 32 MQLRDKILVLLDSWQEAFGGPGGKHPQYYWAYEDLRRYGV 71 (544)
Q Consensus 32 ~~VKeKILeLIqsWaeaF~~~p~klp~i~~aY~~LK~eGv 71 (544)
..++++|.+||..|.+..+. -..+..++..|++-|.
T Consensus 61 ~dl~eq~~qmL~~W~~r~G~----~AT~~~L~~AL~~~~l 96 (115)
T 2o71_A 61 HNVQSQVVEAFIRWRQRFGK----QATFQSLHNGLRAVEV 96 (115)
T ss_dssp TCHHHHHHHHHHHHHHHHGG----GCCHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHHHHCc----CcHHHHHHHHHHHcCC
Confidence 46889999999999998753 3457788888888774
No 32
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=30.32 E-value=2.3e+02 Score=27.39 Aligned_cols=41 Identities=15% Similarity=0.157 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHhhhc---CCHHHHHHhhhhhHHHHHHHH
Q 009068 158 DLVSRCRSNQKKLMQMLTTT---GDEELLGRGLELNDILQNLLA 198 (544)
Q Consensus 158 EL~eqCKsmQprI~rLIeet---dDEElL~eLL~LNDeLn~aL~ 198 (544)
.+......+|+|..+=++.. ..+.++.+||.+-|+|-+||.
T Consensus 84 R~~AEfeN~RkR~~rE~e~~~~~a~e~~~~~LLpVlDnlerAl~ 127 (213)
T 4ani_A 84 RLYADFENFRRRTRQEMEAAEKYRAQSLASDLLPVLDNFERALK 127 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 55556666666666655543 567777777777777777763
No 33
>2p6v_A Transcription initiation factor TFIID subunit 4; alpha helix; HET: MLY; 2.00A {Homo sapiens} SCOP: a.277.1.1
Probab=30.09 E-value=52 Score=29.15 Aligned_cols=32 Identities=9% Similarity=0.255 Sum_probs=25.1
Q ss_pred hHHHHHHHHhhcC-CCCHHHHHHHHHHHHHHHH
Q 009068 16 RNVLGEMVKIVKK-KPDMQLRDKILVLLDSWQE 47 (544)
Q Consensus 16 keFLneLvKLv~~-k~d~~VKeKILeLIqsWae 47 (544)
|.||..|+++.++ +..++|-++|..||+..-+
T Consensus 23 k~FL~tLi~las~~~~spev~~~Vr~LVq~Ll~ 55 (114)
T 2p6v_A 23 XNFLSTLIXLASSGXQSTETAANVXELVQNLLD 55 (114)
T ss_dssp HHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccccChHHHHHHHHHHHHHHH
Confidence 7899999999887 4567777777777777643
No 34
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.88 E-value=2.7e+02 Score=24.36 Aligned_cols=81 Identities=10% Similarity=0.124 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCCcccchhHHHHHHHHHHHHHHHHHHHHhhhc---CC-----H--HHHHHhhhhhHHH
Q 009068 124 SSLDSMRDVMELLSDMLQAVNPSDREAVKDEVIVDLVSRCRSNQKKLMQMLTTT---GD-----E--ELLGRGLELNDIL 193 (544)
Q Consensus 124 sELe~V~~nveLLnEML~~~nP~d~~~~ddElI~EL~eqCKsmQprI~rLIeet---dD-----E--ElL~eLL~LNDeL 193 (544)
..|-.+..++.-|.-||..+.-......--+-|.++.+.|..+-+.+-..|..+ .+ + ..-...-.|-.++
T Consensus 21 ~~I~~In~~vs~l~r~v~~LGT~kDt~~LR~kl~~~~~~t~~l~k~ts~~lk~L~~~~~~~~~~~~r~~k~q~~KL~~dF 100 (130)
T 2dnx_A 21 GNIQRISQATAQIKNLMSQLGTKQDSSKLQENLQQLQHSTNQLAKETNELLKELGSLPLPLSTSEQRQQRLQKERLMNDF 100 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHH
Confidence 456777888888888888884211111123555666666666666665555442 11 1 1122455667788
Q ss_pred HHHHHHHHHHh
Q 009068 194 QNLLAKHDAIA 204 (544)
Q Consensus 194 n~aL~rYd~L~ 204 (544)
..+|..|..+.
T Consensus 101 ~~~L~~FQ~~Q 111 (130)
T 2dnx_A 101 SAALNNFQAVQ 111 (130)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88999998763
No 35
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=29.63 E-value=7.5 Score=33.93 Aligned_cols=17 Identities=35% Similarity=0.583 Sum_probs=14.8
Q ss_pred CHHHHHHHHHHHHHHHH
Q 009068 31 DMQLRDKILVLLDSWQE 47 (544)
Q Consensus 31 d~~VKeKILeLIqsWae 47 (544)
+.++|+||..||..|.+
T Consensus 97 ~~~~k~kl~kll~iW~~ 113 (135)
T 4fu3_A 97 DEGCKKPLERLLNIWQE 113 (135)
T ss_dssp HTTSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcC
Confidence 45789999999999986
No 36
>3ezq_B Protein FADD; apoptosis, DISC, FAS, membrane,receptor, transmembrane; 2.73A {Homo sapiens} PDB: 1e3y_A 1e41_A 3oq9_H
Probab=29.40 E-value=23 Score=31.26 Aligned_cols=34 Identities=15% Similarity=0.209 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhhcC
Q 009068 33 QLRDKILVLLDSWQEAFGGPGGKHPQYYWAYEDLRRYG 70 (544)
Q Consensus 33 ~VKeKILeLIqsWaeaF~~~p~klp~i~~aY~~LK~eG 70 (544)
.+++++.+||..|...-+. -..+..++..|++-|
T Consensus 44 dl~eq~~~mL~~W~~r~G~----~ATv~~L~~AL~~i~ 77 (122)
T 3ezq_B 44 NLTERVRESLRIWKNTEKE----NATVAHLVGALRSCQ 77 (122)
T ss_dssp CHHHHHHHHHHHHHHHCTT----TCCHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHhhCC----CchHHHHHHHHHHCC
Confidence 5899999999999988753 345677777777755
No 37
>3ay5_A Cyclin-D1-binding protein 1; dominant-negative helix-loop-helix transcriptional regulator cycle; 2.50A {Homo sapiens}
Probab=28.28 E-value=2.3e+02 Score=29.08 Aligned_cols=69 Identities=9% Similarity=0.075 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHhhCCCCcccchhHHHHHHHHHHHHHHHHHHHHhhhc----CCHHHHHHhhhhhHHHHHHHHHHHH
Q 009068 130 RDVMELLSDMLQAVNPSDREAVKDEVIVDLVSRCRSNQKKLMQMLTTT----GDEELLGRGLELNDILQNLLAKHDA 202 (544)
Q Consensus 130 ~~nveLLnEML~~~nP~d~~~~ddElI~EL~eqCKsmQprI~rLIeet----dDEElL~eLL~LNDeLn~aL~rYd~ 202 (544)
+..++.+..++....+ ......+.+|++.|++....|-.|+..+ +.+++...+-.|++.+.+++.--+.
T Consensus 252 ~~~lk~i~~~ik~~~~----~~~v~~LD~L~~~~~~i~~~VDeLa~slYPp~d~~~v~~~~~~L~~~~~~~~~~~~~ 324 (360)
T 3ay5_A 252 KACLKKIRMLVAENGK----KDQVAQLDDIVDISDEISPSVDDLALSIYPPMSHLTVRINSAKLVSVLKKALEITKA 324 (360)
T ss_dssp HHHHHHHHHHHHHHCC----TTCHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCc----hhHHHHHHHHHHHHHHhHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444333 2345889999999999999999999876 4466666777777777777765554
No 38
>2olt_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: MSE; 2.00A {Shewanella oneidensis} PDB: 2iiu_A*
Probab=28.15 E-value=2.1e+02 Score=26.57 Aligned_cols=55 Identities=15% Similarity=0.140 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCccc--chhHHHHHHHHHHHHHHHHHHHHhhhc
Q 009068 123 FSSLDSMRDVMELLSDMLQAVNPSDREA--VKDEVIVDLVSRCRSNQKKLMQMLTTT 177 (544)
Q Consensus 123 ~sELe~V~~nveLLnEML~~~nP~d~~~--~ddElI~EL~eqCKsmQprI~rLIeet 177 (544)
.+-.+.+...+++|.++|.++..++... ..-+-|.++-..+..++..|...+..+
T Consensus 20 ~~~a~~~~~~a~~L~~~~~~~~~~d~~~~~~~~~~i~~~E~~aD~l~~~I~~~L~~~ 76 (227)
T 2olt_A 20 QEHMDKVYDCASLLVPFFEATITGNWDDAVQIRKQISLAEKQGDSLKREIRLTLPSG 76 (227)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4557778889999999988753333211 123456678888888888888888753
No 39
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=26.28 E-value=3.6e+02 Score=24.32 Aligned_cols=90 Identities=11% Similarity=0.186 Sum_probs=47.6
Q ss_pred hhHHHhhhhHHHHHHHHHHHHHHHHHHHhhC--CCCcccchhHHHHHHHHHHHHHHHHHHHHhhhcC-----C-------
Q 009068 114 MATEVETLSFSSLDSMRDVMELLSDMLQAVN--PSDREAVKDEVIVDLVSRCRSNQKKLMQMLTTTG-----D------- 179 (544)
Q Consensus 114 M~~E~ekls~sELe~V~~nveLLnEML~~~n--P~d~~~~ddElI~EL~eqCKsmQprI~rLIeetd-----D------- 179 (544)
+-.+.+.+ ..+|..++.+++-|..+-..+- +.... .-.+-|..|...++.+-..|...|..++ +
T Consensus 41 F~~~v~~I-~~~i~~i~~~v~~l~~~~~~~L~~~~~~~-~~k~~le~l~~~i~~~a~~ik~~Lk~l~~~~~~~~~~~~~s 118 (180)
T 1s94_A 41 FFEQVEEI-RAMIDKISDNVDAVKKKHSDILSAPQTDD-QMKEELEELMTDIKRTANKVRGKLKTIELNIEQEEHSNKSS 118 (180)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHCC--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----C
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCc
Confidence 34455555 6778888888877776644421 11111 1123344444444444444444443321 1
Q ss_pred -HH--HHHHhhhhhHHHHHHHHHHHHHhc
Q 009068 180 -EE--LLGRGLELNDILQNLLAKHDAIAS 205 (544)
Q Consensus 180 -EE--lL~eLL~LNDeLn~aL~rYd~L~s 205 (544)
+. .-...-.|-..|..++..|..+..
T Consensus 119 ~~~Rir~~q~~~L~~kf~~~m~~yq~~q~ 147 (180)
T 1s94_A 119 ADLRIRKTQYSTISRKFVEVMSDYNTTQI 147 (180)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 122556778889999999988753
No 40
>3f4m_A Tumor necrosis factor, alpha-induced protein 8- like protein 2; TIPE2, immune homeostasis, tnfaip8, immune system; 1.70A {Homo sapiens}
Probab=26.25 E-value=2.1e+02 Score=26.69 Aligned_cols=54 Identities=15% Similarity=0.146 Sum_probs=29.6
Q ss_pred CcccchhHHHHHHHHHHHHHHHHHHHHhhh--cCCHHHHHHh-hhhhHHHHHHHHHH
Q 009068 147 DREAVKDEVIVDLVSRCRSNQKKLMQMLTT--TGDEELLGRG-LELNDILQNLLAKH 200 (544)
Q Consensus 147 d~~~~ddElI~EL~eqCKsmQprI~rLIee--tdDEElL~eL-L~LNDeLn~aL~rY 200 (544)
.-..++...+.++-+.|++..-+++.+-+- +=|-..|.++ .+..|.|.+++.+|
T Consensus 55 qf~~eEl~~~~~fr~k~~~~amt~iSF~eVdfTfD~~~L~~~L~ec~~lL~~lv~~H 111 (161)
T 3f4m_A 55 SFGPSELALATRFRQKLRQGAMTALSFGEVDFTFEAAVLAGLLTECRDVLLELVEHH 111 (161)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHTSTTSCCCHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhhhhccCccccHHHHHHHHHHHHHHHHHHHHhh
Confidence 333445566666777777766666666543 2244334433 33566666666554
No 41
>2bzb_A Conserved domain protein; transferase, phosphatase, phosphorylation, sporulation, antithetical, negative, regulator, spine; NMR {Bacillus anthracis} SCOP: a.30.7.1
Probab=25.75 E-value=1.1e+02 Score=24.20 Aligned_cols=45 Identities=18% Similarity=0.313 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhc--CCHHHHHHhhhhhHHHHHHHHHHHHHhc
Q 009068 157 VDLVSRCRSNQKKLMQMLTTT--GDEELLGRGLELNDILQNLLAKHDAIAS 205 (544)
Q Consensus 157 ~EL~eqCKsmQprI~rLIeet--dDEElL~eLL~LNDeLn~aL~rYd~L~s 205 (544)
.+|....+..|..++.++... .++ +.|.+.-+|...|..|.++..
T Consensus 4 ~~L~~~IE~kR~eL~~l~~k~Gl~~~----~vI~~SQeLD~LIn~Y~k~~~ 50 (62)
T 2bzb_A 4 GQLKNKIENKKKELIQLVARHGLDHD----KVLLFSRDLDKLINKFMNVKD 50 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCHH----HHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCH----HHHHHHHHHHHHHHHHHHHhc
Confidence 577788888899999999874 555 558899999999999998764
No 42
>1wxp_A THO complex subunit 1; death domain, structural genomics, nuclear matrix, riken structural genomics/proteomics initiative, RSGI, transport protein; NMR {Homo sapiens}
Probab=23.97 E-value=26 Score=29.97 Aligned_cols=36 Identities=22% Similarity=0.314 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhhcCc
Q 009068 32 MQLRDKILVLLDSWQEAFGGPGGKHPQYYWAYEDLRRYGV 71 (544)
Q Consensus 32 ~~VKeKILeLIqsWaeaF~~~p~klp~i~~aY~~LK~eGv 71 (544)
..++++|.+||..|...-+. -..+..++..|++-|.
T Consensus 54 ~~~~eq~~~mL~~W~~r~G~----~AT~~~L~~AL~~~~~ 89 (110)
T 1wxp_A 54 EDMKMRAKQLLVAWQDQEGV----HATPENLINALNKSGL 89 (110)
T ss_dssp SSHHHHHHHHHHHHHHHHGG----GCCHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHHhhCc----CcHHHHHHHHHHHcCc
Confidence 46789999999999987653 3456777888887664
No 43
>1i5n_A Chemotaxis protein CHEA; four-helix bundle, transferase; 2.14A {Salmonella typhimurium} SCOP: a.24.10.3
Probab=22.90 E-value=3.9e+02 Score=23.48 Aligned_cols=76 Identities=14% Similarity=0.157 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCcccchhHHHHHH-------------------HHHHHHHHHHHHHHhhh-c-CCHH
Q 009068 123 FSSLDSMRDVMELLSDMLQAVNPSDREAVKDEVIVDL-------------------VSRCRSNQKKLMQMLTT-T-GDEE 181 (544)
Q Consensus 123 ~sELe~V~~nveLLnEML~~~nP~d~~~~ddElI~EL-------------------~eqCKsmQprI~rLIee-t-dDEE 181 (544)
..-++.+...++-|.+.|....... .+.+.+.++ .+-|..+...+..+-.. + .+.+
T Consensus 10 ~~Fl~Ea~e~L~~le~~L~~le~~~---~d~~~l~~lfR~aHTLKGsA~~~G~~~l~~lah~lE~~l~~~r~g~~~~~~~ 86 (146)
T 1i5n_A 10 QTFFDEADELLADMEQHLLDLVPES---PDAEQLNAIFRAAHSIKGGAGTFGFTILQETTHLMENLLDEARRGEMQLNTD 86 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCTTS---CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTTSSCCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCc---CcHHHHHHHHHHHHHHhHhHHccCHHHHHHHHHHHHHHHHHHHhCCCCCCHH
Confidence 3446666667777777666653211 233444443 34444444443333332 2 4567
Q ss_pred HHHHhhhhhHHHHHHHHHHH
Q 009068 182 LLGRGLELNDILQNLLAKHD 201 (544)
Q Consensus 182 lL~eLL~LNDeLn~aL~rYd 201 (544)
++..+++.-|.|...|..++
T Consensus 87 l~~~l~~~~D~l~~~l~~~~ 106 (146)
T 1i5n_A 87 IINLFLETKDIMQEQLDAYK 106 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 78888888888888886553
No 44
>1vf6_C Maguk P55 subfamily member 5; L27 domain, heterodimer, four-helical bundle, coiled-coil, hydrophobic packing interactions; 2.10A {Mus musculus} SCOP: a.194.1.1
Probab=22.25 E-value=46 Score=27.09 Aligned_cols=51 Identities=27% Similarity=0.324 Sum_probs=36.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHhhhhhHHHHHHHHHHHHHh
Q 009068 152 KDEVIVDLVSRCRSNQKKLMQMLTTTGDEELLGRGLELNDILQNLLAKHDAIA 204 (544)
Q Consensus 152 ddElI~EL~eqCKsmQprI~rLIeetdDEElL~eLL~LNDeLn~aL~rYd~L~ 204 (544)
.+.-|+||...+|..|..|.+- ++-+|-++|.+|++ |.+.++|+.-|+++.
T Consensus 12 ~~~elEel~sSLK~iq~~L~Ds-QSQeDi~lllqL~~-~~DFQ~A~kIhNaVs 62 (72)
T 1vf6_C 12 QDPDVEDLFSSLKHIQHTLVDS-QSQEDISLLLQLVQ-NRDFQNAFKIHNAVT 62 (72)
T ss_dssp CCHHHHHHHHHHHHHHTTCCSH-HHHHHHHHHHHHHH-CHHHHHHHHHHHHHC
T ss_pred CCcCHHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence 3455779999998877765332 12246667766665 788999999999875
No 45
>2d4u_A Methyl-accepting chemotaxis protein I; helix-turn-helix, signaling protein; 1.95A {Escherichia coli} PDB: 3atp_A
Probab=20.71 E-value=3.9e+02 Score=22.66 Aligned_cols=52 Identities=8% Similarity=0.125 Sum_probs=27.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhc--CC-HHHHHH-hhhhhHHHHHHHHHHHHH
Q 009068 152 KDEVIVDLVSRCRSNQKKLMQMLTTT--GD-EELLGR-GLELNDILQNLLAKHDAI 203 (544)
Q Consensus 152 ddElI~EL~eqCKsmQprI~rLIeet--dD-EElL~e-LL~LNDeLn~aL~rYd~L 203 (544)
+.+++.+|...-+.+..-|..++..+ +| ++.... +-.+.+.+..++..|..+
T Consensus 98 e~~l~~~l~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~ 153 (176)
T 2d4u_A 98 STAAAAEIKRNYDIYHNALAELIQLLGAGKINEFFDQPTQGYQDGFEKQYVAYMEQ 153 (176)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHhccchHHHHHHHHHHHHHHHH
Confidence 45666666666655555555555543 33 332221 122346666666666554
No 46
>3duz_A GP67, major envelope glycoprotein; fusion protein, coiled-coil, fusion peptide, trimer, viral, lipoprotein; 2.95A {Autographa californica nuclearpolyhedrosis virus}
Probab=20.62 E-value=2e+02 Score=30.72 Aligned_cols=33 Identities=18% Similarity=0.265 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhc--CCHHHHHHhhh
Q 009068 156 IVDLVSRCRSNQKKLMQMLTTT--GDEELLGRGLE 188 (544)
Q Consensus 156 I~EL~eqCKsmQprI~rLIeet--dDEElL~eLL~ 188 (544)
+..|++...+|..++-++|..+ -||++++.|+.
T Consensus 300 l~~L~~~~n~l~~~l~~vI~SVaKIDeRLIGrLmg 334 (487)
T 3duz_A 300 IELMHAHINKLNNMLHDLIVSVAKVDERLIGNLMN 334 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhC
Confidence 3578888888999999998887 58999998885
No 47
>2yqf_A Ankyrin-1; death domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yvi_A
Probab=20.25 E-value=38 Score=28.93 Aligned_cols=36 Identities=19% Similarity=0.260 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhhcCc
Q 009068 32 MQLRDKILVLLDSWQEAFGGPGGKHPQYYWAYEDLRRYGV 71 (544)
Q Consensus 32 ~~VKeKILeLIqsWaeaF~~~p~klp~i~~aY~~LK~eGv 71 (544)
..+++++.+||..|...-+. ..-+..++..|++-|.
T Consensus 55 ~~~~eq~~~mL~~W~~~~g~----~AT~~~L~~aL~~i~r 90 (111)
T 2yqf_A 55 NSLLEQSVALLNLWVIREGQ----NANMENLYTALQSIDR 90 (111)
T ss_dssp SCHHHHHHHHHHHHHHHHTT----SCCHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHHhhCC----CchHHHHHHHHHHcCc
Confidence 47899999999999988653 3457777888877663
Done!