BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 009069
         (544 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2AVN|A Chain A, Crystal Structure Of A UbiquinoneMENAQUINONE BIOSYNTHESIS
           Methyltransferase-Related Protein (Tm1389) From
           Thermotoga Maritima Msb8 At 2.35 A Resolution
 pdb|2AVN|B Chain B, Crystal Structure Of A UbiquinoneMENAQUINONE BIOSYNTHESIS
           Methyltransferase-Related Protein (Tm1389) From
           Thermotoga Maritima Msb8 At 2.35 A Resolution
          Length = 260

 Score = 40.0 bits (92), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 31/131 (23%), Positives = 53/131 (40%), Gaps = 8/131 (6%)

Query: 222 AIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSR 281
            +D G G   W  +L  R    V   P    +  ++ A E+GV  ++   A   LP+PS 
Sbjct: 58  VLDLGGGTGKWSLFLQERGFEVVLVDP---SKEXLEVAREKGVKNVVEAKAE-DLPFPSG 113

Query: 282 AFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPP----VNWESHWKGWNRTTE 337
           AF+       ++ + +       E+ RVL P G  I +       +        W++ T 
Sbjct: 114 AFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVDNFYTFLQQXIEKDAWDQITR 173

Query: 338 DLKSEQNGIET 348
            LK++   + T
Sbjct: 174 FLKTQTTSVGT 184


>pdb|1A2N|A Chain A, Structure Of The C115a Mutant Of Mura Complexed With The
           Fluorinated Analog Of The Reaction Tetrahedral
           Intermediate
          Length = 419

 Score = 32.0 bits (71), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 3/46 (6%)

Query: 182 RFQGDRFSFPGGGTMFPRGADAYI---DDIGKLINLKDGSIRTAID 224
           RF   + S PGG T+  R  D +I   + +G  I L++G ++ ++D
Sbjct: 103 RFGQGQVSLPGGATIGARPVDLHISGLEQLGATIKLEEGYVKASVD 148


>pdb|3SWD|A Chain A, E. Coli Mura In Complex With Udp-N-Acetylmuramic Acid And
           Covalent Adduct Of Pep With Cys115
 pdb|3SWD|B Chain B, E. Coli Mura In Complex With Udp-N-Acetylmuramic Acid And
           Covalent Adduct Of Pep With Cys115
 pdb|3SWD|C Chain C, E. Coli Mura In Complex With Udp-N-Acetylmuramic Acid And
           Covalent Adduct Of Pep With Cys115
 pdb|3SWD|D Chain D, E. Coli Mura In Complex With Udp-N-Acetylmuramic Acid And
           Covalent Adduct Of Pep With Cys115
 pdb|3SWD|E Chain E, E. Coli Mura In Complex With Udp-N-Acetylmuramic Acid And
           Covalent Adduct Of Pep With Cys115
 pdb|3SWD|F Chain F, E. Coli Mura In Complex With Udp-N-Acetylmuramic Acid And
           Covalent Adduct Of Pep With Cys115
 pdb|3SWD|G Chain G, E. Coli Mura In Complex With Udp-N-Acetylmuramic Acid And
           Covalent Adduct Of Pep With Cys115
 pdb|3SWD|H Chain H, E. Coli Mura In Complex With Udp-N-Acetylmuramic Acid And
           Covalent Adduct Of Pep With Cys115
 pdb|3SWD|I Chain I, E. Coli Mura In Complex With Udp-N-Acetylmuramic Acid And
           Covalent Adduct Of Pep With Cys115
 pdb|3SWD|J Chain J, E. Coli Mura In Complex With Udp-N-Acetylmuramic Acid And
           Covalent Adduct Of Pep With Cys115
 pdb|3SWD|K Chain K, E. Coli Mura In Complex With Udp-N-Acetylmuramic Acid And
           Covalent Adduct Of Pep With Cys115
 pdb|3SWD|L Chain L, E. Coli Mura In Complex With Udp-N-Acetylmuramic Acid And
           Covalent Adduct Of Pep With Cys115
          Length = 418

 Score = 31.2 bits (69), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 3/46 (6%)

Query: 182 RFQGDRFSFPGGGTMFPRGADAYI---DDIGKLINLKDGSIRTAID 224
           RF   + S PGG T+  R  D +I   + +G  I L++G ++ ++D
Sbjct: 103 RFGQGQVSLPGGXTIGARPVDLHISGLEQLGATIKLEEGYVKASVD 148


>pdb|3KQJ|A Chain A, Mura Binary Complex With Udp-N-Acetylglucosamine
 pdb|3KR6|A Chain A, Mura Dead-End Complex With Fosfomycin
          Length = 419

 Score = 30.8 bits (68), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 3/46 (6%)

Query: 182 RFQGDRFSFPGGGTMFPRGADAYI---DDIGKLINLKDGSIRTAID 224
           RF   + S PGG T+  R  D +I   + +G  I L++G ++ ++D
Sbjct: 103 RFGQGQVSLPGGCTIGARPVDLHISGLEQLGATIKLEEGYVKASVD 148


>pdb|2Z2C|A Chain A, Mura Inhibited By Unag-Cnicin Adduct
 pdb|2Z2C|B Chain B, Mura Inhibited By Unag-Cnicin Adduct
 pdb|2Z2C|C Chain C, Mura Inhibited By Unag-Cnicin Adduct
 pdb|2Z2C|D Chain D, Mura Inhibited By Unag-Cnicin Adduct
          Length = 423

 Score = 30.8 bits (68), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 3/46 (6%)

Query: 182 RFQGDRFSFPGGGTMFPRGADAYI---DDIGKLINLKDGSIRTAID 224
           RF   + S PGG T+  R  D +I   + +G  I L++G ++ ++D
Sbjct: 103 RFGQGQVSLPGGCTIGARPVDLHISGLEQLGATIKLEEGYVKASVD 148


>pdb|1UAE|A Chain A, Structure Of Udp-N-Acetylglucosamine Enolpyruvyl
           Transferase
          Length = 419

 Score = 30.8 bits (68), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 3/46 (6%)

Query: 182 RFQGDRFSFPGGGTMFPRGADAYI---DDIGKLINLKDGSIRTAID 224
           RF   + S PGG T+  R  D +I   + +G  I L++G ++ ++D
Sbjct: 103 RFGQGQVSLPGGCTIGARPVDLHISGLEQLGATIKLEEGYVKASVD 148


>pdb|3ISS|A Chain A, Crystal Structure Of Enolpyruvyl-Udp-Glcnac Synthase
           (Mura):udp-N- Acetylmuramic Acid:phosphite From
           Escherichia Coli
 pdb|3ISS|B Chain B, Crystal Structure Of Enolpyruvyl-Udp-Glcnac Synthase
           (Mura):udp-N- Acetylmuramic Acid:phosphite From
           Escherichia Coli
 pdb|3ISS|C Chain C, Crystal Structure Of Enolpyruvyl-Udp-Glcnac Synthase
           (Mura):udp-N- Acetylmuramic Acid:phosphite From
           Escherichia Coli
 pdb|3ISS|D Chain D, Crystal Structure Of Enolpyruvyl-Udp-Glcnac Synthase
           (Mura):udp-N- Acetylmuramic Acid:phosphite From
           Escherichia Coli
 pdb|3ISS|E Chain E, Crystal Structure Of Enolpyruvyl-Udp-Glcnac Synthase
           (Mura):udp-N- Acetylmuramic Acid:phosphite From
           Escherichia Coli
 pdb|3ISS|F Chain F, Crystal Structure Of Enolpyruvyl-Udp-Glcnac Synthase
           (Mura):udp-N- Acetylmuramic Acid:phosphite From
           Escherichia Coli
 pdb|3ISS|G Chain G, Crystal Structure Of Enolpyruvyl-Udp-Glcnac Synthase
           (Mura):udp-N- Acetylmuramic Acid:phosphite From
           Escherichia Coli
 pdb|3ISS|H Chain H, Crystal Structure Of Enolpyruvyl-Udp-Glcnac Synthase
           (Mura):udp-N- Acetylmuramic Acid:phosphite From
           Escherichia Coli
 pdb|3ISS|I Chain I, Crystal Structure Of Enolpyruvyl-Udp-Glcnac Synthase
           (Mura):udp-N- Acetylmuramic Acid:phosphite From
           Escherichia Coli
 pdb|3ISS|J Chain J, Crystal Structure Of Enolpyruvyl-Udp-Glcnac Synthase
           (Mura):udp-N- Acetylmuramic Acid:phosphite From
           Escherichia Coli
 pdb|3ISS|K Chain K, Crystal Structure Of Enolpyruvyl-Udp-Glcnac Synthase
           (Mura):udp-N- Acetylmuramic Acid:phosphite From
           Escherichia Coli
 pdb|3ISS|L Chain L, Crystal Structure Of Enolpyruvyl-Udp-Glcnac Synthase
           (Mura):udp-N- Acetylmuramic Acid:phosphite From
           Escherichia Coli
          Length = 418

 Score = 30.8 bits (68), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 3/46 (6%)

Query: 182 RFQGDRFSFPGGGTMFPRGADAYI---DDIGKLINLKDGSIRTAID 224
           RF   + S PGG T+  R  D +I   + +G  I L++G ++ ++D
Sbjct: 103 RFGQGQVSLPGGCTIGARPVDLHISGLEQLGATIKLEEGYVKASVD 148


>pdb|4AGJ|A Chain A, Crystal Structure Of The Capsid Protein (110-267) From
           Aura Virus In Complex With Dioxane
          Length = 158

 Score = 30.4 bits (67), Expect = 2.5,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 4/58 (6%)

Query: 179 NW----VRFQGDRFSFPGGGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASW 232
           NW    V+F G RF+ P G           +DD GK++ +  G       T   V +W
Sbjct: 84  NWHHGAVQFSGGRFTIPTGAGGPGDSGRPILDDSGKVVAIVLGGANEGARTALSVVTW 141


>pdb|1NW4|A Chain A, Crystal Structure Of Plasmodium Falciparum Purine
           Nucleoside Phosphorylase In Complex With Immh And
           Sulfate
 pdb|1NW4|B Chain B, Crystal Structure Of Plasmodium Falciparum Purine
           Nucleoside Phosphorylase In Complex With Immh And
           Sulfate
 pdb|1NW4|C Chain C, Crystal Structure Of Plasmodium Falciparum Purine
           Nucleoside Phosphorylase In Complex With Immh And
           Sulfate
 pdb|1NW4|D Chain D, Crystal Structure Of Plasmodium Falciparum Purine
           Nucleoside Phosphorylase In Complex With Immh And
           Sulfate
 pdb|1NW4|E Chain E, Crystal Structure Of Plasmodium Falciparum Purine
           Nucleoside Phosphorylase In Complex With Immh And
           Sulfate
 pdb|1NW4|F Chain F, Crystal Structure Of Plasmodium Falciparum Purine
           Nucleoside Phosphorylase In Complex With Immh And
           Sulfate
 pdb|1Q1G|A Chain A, Crystal Structure Of Plasmodium Falciparum Pnp With
           5'-Methylthio- Immucillin-H
 pdb|1Q1G|B Chain B, Crystal Structure Of Plasmodium Falciparum Pnp With
           5'-Methylthio- Immucillin-H
 pdb|1Q1G|C Chain C, Crystal Structure Of Plasmodium Falciparum Pnp With
           5'-Methylthio- Immucillin-H
 pdb|1Q1G|D Chain D, Crystal Structure Of Plasmodium Falciparum Pnp With
           5'-Methylthio- Immucillin-H
 pdb|1Q1G|E Chain E, Crystal Structure Of Plasmodium Falciparum Pnp With
           5'-Methylthio- Immucillin-H
 pdb|1Q1G|F Chain F, Crystal Structure Of Plasmodium Falciparum Pnp With
           5'-Methylthio- Immucillin-H
          Length = 276

 Score = 29.3 bits (64), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 6/83 (7%)

Query: 250 DTHEAQVQFALERGVPALIGVMASIRLPYP-----SRAFDMAHCSRCLIPWGQYDGLYLI 304
           D ++   + A E  VP   G+  S  + YP     SR  D +  +  ++   +   L +I
Sbjct: 135 DVYDTLNKCAQELNVPVFNGISVSSDMYYPNKIIPSRLEDYSKANAAVVEM-ELATLMVI 193

Query: 305 EVDRVLRPGGYWILSGPPVNWES 327
              R ++ GG  I+ G P  W+ 
Sbjct: 194 GTLRKVKTGGILIVDGCPFKWDE 216


>pdb|3PHC|A Chain A, Crystal Structure Of Plasmodium Falciparum Purine
           Nucleoside Phosphorylase In Complex With Dadme-Immg
 pdb|3PHC|B Chain B, Crystal Structure Of Plasmodium Falciparum Purine
           Nucleoside Phosphorylase In Complex With Dadme-Immg
 pdb|3PHC|C Chain C, Crystal Structure Of Plasmodium Falciparum Purine
           Nucleoside Phosphorylase In Complex With Dadme-Immg
 pdb|3PHC|D Chain D, Crystal Structure Of Plasmodium Falciparum Purine
           Nucleoside Phosphorylase In Complex With Dadme-Immg
 pdb|3PHC|E Chain E, Crystal Structure Of Plasmodium Falciparum Purine
           Nucleoside Phosphorylase In Complex With Dadme-Immg
 pdb|3PHC|F Chain F, Crystal Structure Of Plasmodium Falciparum Purine
           Nucleoside Phosphorylase In Complex With Dadme-Immg
          Length = 275

 Score = 29.3 bits (64), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 6/83 (7%)

Query: 250 DTHEAQVQFALERGVPALIGVMASIRLPYP-----SRAFDMAHCSRCLIPWGQYDGLYLI 304
           D ++   + A E  VP   G+  S  + YP     SR  D +  +  ++   +   L +I
Sbjct: 134 DVYDTLNKCAQELNVPVFNGISVSSDMYYPNKIIPSRLEDYSKANAAVVEM-ELATLMVI 192

Query: 305 EVDRVLRPGGYWILSGPPVNWES 327
              R ++ GG  I+ G P  W+ 
Sbjct: 193 GTLRKVKTGGILIVDGCPFKWDE 215


>pdb|2BSX|A Chain A, Crystal Structure Of The Plasmodium Falciparum Purine
           Nucleoside Phosphorylase Complexed With Inosine
 pdb|3ENZ|A Chain A, Arsenolytic Structure Of Plasmodium Falciparum Purine
           Nucleoside Phosphorylase With Hypoxanthine, Ribose And
           Arsenate Ion
 pdb|3ENZ|B Chain B, Arsenolytic Structure Of Plasmodium Falciparum Purine
           Nucleoside Phosphorylase With Hypoxanthine, Ribose And
           Arsenate Ion
 pdb|3ENZ|C Chain C, Arsenolytic Structure Of Plasmodium Falciparum Purine
           Nucleoside Phosphorylase With Hypoxanthine, Ribose And
           Arsenate Ion
 pdb|3ENZ|D Chain D, Arsenolytic Structure Of Plasmodium Falciparum Purine
           Nucleoside Phosphorylase With Hypoxanthine, Ribose And
           Arsenate Ion
 pdb|3ENZ|E Chain E, Arsenolytic Structure Of Plasmodium Falciparum Purine
           Nucleoside Phosphorylase With Hypoxanthine, Ribose And
           Arsenate Ion
 pdb|3ENZ|F Chain F, Arsenolytic Structure Of Plasmodium Falciparum Purine
           Nucleoside Phosphorylase With Hypoxanthine, Ribose And
           Arsenate Ion
          Length = 253

 Score = 29.3 bits (64), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 6/83 (7%)

Query: 250 DTHEAQVQFALERGVPALIGVMASIRLPYP-----SRAFDMAHCSRCLIPWGQYDGLYLI 304
           D ++   + A E  VP   G+  S  + YP     SR  D +  +  ++   +   L +I
Sbjct: 133 DVYDTLNKCAQELNVPVFNGISVSSDMYYPNKIIPSRLEDYSKANAAVVEM-ELATLMVI 191

Query: 305 EVDRVLRPGGYWILSGPPVNWES 327
              R ++ GG  I+ G P  W+ 
Sbjct: 192 GTLRKVKTGGILIVDGCPFKWDE 214


>pdb|3H7U|A Chain A, Crystal Structure Of The Plant Stress-Response Enzyme
           Akr4c9
          Length = 335

 Score = 29.3 bits (64), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 28/108 (25%), Positives = 45/108 (41%), Gaps = 6/108 (5%)

Query: 297 QYDGLYLIEVDRVLRPGGYWIL--SGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLC 354
           +Y  LYLI     ++ G   I   +  PV+  S WK      +  K+   G+   +    
Sbjct: 126 EYVDLYLIHWPARIKKGSVGIKPENLLPVDIPSTWKAMEALYDSGKARAIGVSNFST--- 182

Query: 355 WKKLIQKKDLAIWQKPTNHVHCIANRRVFKKPRFCKAQDPDMAWYTKM 402
            KKL    +LA      N V C  + R  K   FCK++   ++ Y+ +
Sbjct: 183 -KKLADLLELARVPPAVNQVECHPSWRQTKLQEFCKSKGVHLSAYSPL 229


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.136    0.442 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,770,691
Number of Sequences: 62578
Number of extensions: 779201
Number of successful extensions: 1357
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1354
Number of HSP's gapped (non-prelim): 12
length of query: 544
length of database: 14,973,337
effective HSP length: 104
effective length of query: 440
effective length of database: 8,465,225
effective search space: 3724699000
effective search space used: 3724699000
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)