Query 009069
Match_columns 544
No_of_seqs 550 out of 3180
Neff 6.2
Searched_HMMs 46136
Date Thu Mar 28 20:02:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009069.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009069hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03141 Methyltransf_29: Puta 100.0 7E-141 2E-145 1117.3 25.3 426 106-544 1-433 (506)
2 COG2226 UbiE Methylase involve 99.6 1.4E-15 3.1E-20 151.6 12.2 112 206-320 41-156 (238)
3 PF01209 Ubie_methyltran: ubiE 99.6 1.7E-15 3.8E-20 151.1 10.5 111 207-320 38-153 (233)
4 PF08241 Methyltransf_11: Meth 99.6 4E-15 8.7E-20 124.6 8.1 92 223-318 1-95 (95)
5 PTZ00098 phosphoethanolamine N 99.5 5.4E-14 1.2E-18 142.7 11.3 123 195-321 31-157 (263)
6 PLN02244 tocopherol O-methyltr 99.5 2.5E-13 5.5E-18 142.7 16.0 119 201-321 98-224 (340)
7 PLN02233 ubiquinone biosynthes 99.5 1.5E-13 3.3E-18 139.2 13.6 110 209-321 66-183 (261)
8 PLN02396 hexaprenyldihydroxybe 99.5 4.3E-13 9.3E-18 139.9 14.3 150 218-372 131-296 (322)
9 COG2227 UbiG 2-polyprenyl-3-me 99.5 9.3E-14 2E-18 137.3 8.6 153 165-325 11-166 (243)
10 PRK10258 biotin biosynthesis p 99.5 3.3E-13 7.1E-18 135.2 12.8 108 206-321 32-141 (251)
11 PRK11207 tellurite resistance 99.5 6.6E-13 1.4E-17 129.0 12.8 108 208-319 22-133 (197)
12 PF13489 Methyltransf_23: Meth 99.4 5.7E-13 1.2E-17 122.6 10.1 145 204-360 9-161 (161)
13 TIGR00477 tehB tellurite resis 99.4 2.5E-12 5.4E-17 124.8 13.5 108 208-319 22-132 (195)
14 PRK14103 trans-aconitate 2-met 99.4 1.8E-12 3.9E-17 130.5 11.6 105 206-321 19-127 (255)
15 TIGR02752 MenG_heptapren 2-hep 99.4 4.1E-12 8.9E-17 125.4 13.5 113 206-321 35-152 (231)
16 PF02353 CMAS: Mycolic acid cy 99.4 9.5E-13 2.1E-17 134.4 9.2 123 190-320 36-166 (273)
17 PLN02336 phosphoethanolamine N 99.4 7E-12 1.5E-16 137.1 15.3 112 206-321 256-370 (475)
18 PRK15068 tRNA mo(5)U34 methylt 99.4 1.1E-11 2.5E-16 129.4 16.0 111 206-320 112-226 (322)
19 PRK11036 putative S-adenosyl-L 99.4 4.3E-12 9.4E-17 127.8 12.1 113 207-321 33-150 (255)
20 PLN02490 MPBQ/MSBQ methyltrans 99.4 1.3E-11 2.9E-16 129.5 15.7 136 219-361 114-255 (340)
21 PRK08317 hypothetical protein; 99.3 2.7E-11 5.9E-16 118.4 16.7 116 202-321 5-125 (241)
22 TIGR00740 methyltransferase, p 99.3 6.1E-12 1.3E-16 125.3 12.0 102 218-321 53-162 (239)
23 PRK05785 hypothetical protein; 99.3 4.9E-12 1.1E-16 125.7 11.0 87 219-314 52-141 (226)
24 PF12847 Methyltransf_18: Meth 99.3 5.2E-12 1.1E-16 110.0 9.7 100 220-320 3-111 (112)
25 PRK01683 trans-aconitate 2-met 99.3 9.8E-12 2.1E-16 125.0 11.7 108 205-321 20-131 (258)
26 COG2230 Cfa Cyclopropane fatty 99.3 7.4E-12 1.6E-16 127.5 10.6 123 190-320 46-176 (283)
27 PRK15451 tRNA cmo(5)U34 methyl 99.3 2.3E-11 5E-16 122.2 13.9 118 202-321 40-165 (247)
28 TIGR00452 methyltransferase, p 99.3 3.3E-11 7.1E-16 125.4 15.3 138 219-360 122-271 (314)
29 PRK12335 tellurite resistance 99.3 2E-11 4.3E-16 125.3 13.3 98 221-320 123-223 (287)
30 TIGR02072 BioC biotin biosynth 99.3 1.7E-11 3.7E-16 120.1 12.1 97 219-321 35-136 (240)
31 KOG1540 Ubiquinone biosynthesi 99.3 1.1E-11 2.4E-16 123.0 10.5 105 215-321 97-215 (296)
32 PF13847 Methyltransf_31: Meth 99.3 1.3E-11 2.8E-16 114.4 10.3 100 219-321 4-111 (152)
33 PF03141 Methyltransf_29: Puta 99.3 2.7E-11 5.8E-16 130.4 13.0 127 214-360 361-489 (506)
34 PF13649 Methyltransf_25: Meth 99.3 5.1E-12 1.1E-16 109.1 5.4 92 222-314 1-101 (101)
35 PF07021 MetW: Methionine bios 99.3 4.2E-11 9.1E-16 115.3 11.7 143 207-360 6-165 (193)
36 PRK11873 arsM arsenite S-adeno 99.3 3.8E-11 8.3E-16 121.8 12.1 101 219-321 78-184 (272)
37 PF08242 Methyltransf_12: Meth 99.3 2.3E-12 5E-17 110.5 2.6 93 223-316 1-99 (99)
38 PRK00107 gidB 16S rRNA methylt 99.3 2.1E-10 4.6E-15 111.0 16.5 116 219-359 46-166 (187)
39 COG4106 Tam Trans-aconitate me 99.2 3.5E-11 7.6E-16 117.0 10.8 208 207-469 21-231 (257)
40 PRK11088 rrmA 23S rRNA methylt 99.2 4E-11 8.7E-16 122.0 11.5 91 219-322 86-183 (272)
41 PF03848 TehB: Tellurite resis 99.2 9.2E-11 2E-15 113.7 11.9 109 208-320 22-133 (192)
42 KOG4300 Predicted methyltransf 99.2 5.9E-11 1.3E-15 114.7 9.2 100 221-321 79-183 (252)
43 smart00828 PKS_MT Methyltransf 99.2 1.7E-10 3.7E-15 113.4 12.2 98 221-321 2-105 (224)
44 PRK00121 trmB tRNA (guanine-N( 99.2 1.2E-10 2.6E-15 113.7 10.9 102 219-321 41-157 (202)
45 TIGR03587 Pse_Me-ase pseudamin 99.2 2.1E-10 4.5E-15 112.4 12.2 94 219-320 44-142 (204)
46 TIGR03840 TMPT_Se_Te thiopurin 99.2 2.2E-10 4.7E-15 113.1 12.2 102 219-320 35-152 (213)
47 TIGR00406 prmA ribosomal prote 99.2 4.8E-10 1E-14 115.3 14.7 123 192-321 133-260 (288)
48 PF06325 PrmA: Ribosomal prote 99.2 2.9E-10 6.3E-15 117.2 12.8 145 191-360 134-281 (295)
49 PRK11188 rrmJ 23S rRNA methylt 99.1 2.3E-10 4.9E-15 112.5 11.1 109 199-321 33-166 (209)
50 PRK06922 hypothetical protein; 99.1 1.7E-10 3.6E-15 128.8 11.2 102 219-321 419-538 (677)
51 COG2264 PrmA Ribosomal protein 99.1 4.8E-10 1E-14 115.2 13.7 144 194-359 138-285 (300)
52 PRK11705 cyclopropane fatty ac 99.1 2.8E-10 6.1E-15 121.6 12.1 110 202-321 153-268 (383)
53 TIGR02469 CbiT precorrin-6Y C5 99.1 6.6E-10 1.4E-14 97.9 12.4 109 206-320 9-122 (124)
54 PRK00216 ubiE ubiquinone/menaq 99.1 2.3E-09 5.1E-14 105.2 17.5 114 205-321 40-159 (239)
55 PRK00517 prmA ribosomal protei 99.1 8.9E-10 1.9E-14 111.0 14.7 135 197-359 98-235 (250)
56 PF05175 MTS: Methyltransferas 99.1 2.5E-10 5.4E-15 108.4 10.2 117 201-321 16-141 (170)
57 TIGR02021 BchM-ChlM magnesium 99.1 5.7E-10 1.2E-14 109.6 12.4 157 200-361 37-205 (219)
58 COG2813 RsmC 16S RNA G1207 met 99.1 4.6E-10 1E-14 114.8 11.4 133 185-321 126-267 (300)
59 PLN02336 phosphoethanolamine N 99.1 3.8E-10 8.2E-15 123.5 11.3 111 207-321 28-143 (475)
60 PRK09489 rsmC 16S ribosomal RN 99.1 4.9E-10 1.1E-14 118.0 11.7 113 204-321 184-304 (342)
61 KOG1270 Methyltransferases [Co 99.1 3.3E-10 7.1E-15 113.2 9.3 135 177-321 46-196 (282)
62 TIGR00138 gidB 16S rRNA methyl 99.1 2.1E-09 4.6E-14 103.4 14.7 96 219-321 43-143 (181)
63 smart00138 MeTrc Methyltransfe 99.1 5.5E-10 1.2E-14 113.6 11.2 103 218-320 99-242 (264)
64 TIGR01934 MenG_MenH_UbiE ubiqu 99.1 1.2E-09 2.5E-14 106.2 12.9 113 204-321 27-144 (223)
65 TIGR00537 hemK_rel_arch HemK-r 99.1 2.6E-09 5.5E-14 101.9 14.4 99 220-321 21-141 (179)
66 TIGR00091 tRNA (guanine-N(7)-) 99.1 1.3E-09 2.8E-14 105.7 12.2 100 220-321 18-133 (194)
67 PRK08287 cobalt-precorrin-6Y C 99.1 3.7E-09 8E-14 101.5 15.1 133 201-359 16-153 (187)
68 PRK15001 SAM-dependent 23S rib 99.0 1.6E-09 3.4E-14 115.4 12.9 112 206-321 218-341 (378)
69 PRK13255 thiopurine S-methyltr 99.0 1.8E-09 3.8E-14 107.0 12.1 95 220-318 39-153 (218)
70 PRK06202 hypothetical protein; 99.0 9.5E-10 2.1E-14 109.1 10.1 96 218-320 60-166 (232)
71 PLN02585 magnesium protoporphy 99.0 3.1E-09 6.6E-14 110.8 14.1 153 202-359 127-296 (315)
72 PRK13944 protein-L-isoaspartat 99.0 2.1E-09 4.7E-14 105.1 12.1 107 204-320 60-173 (205)
73 KOG1541 Predicted protein carb 99.0 2E-09 4.4E-14 105.1 11.0 117 202-324 34-164 (270)
74 PRK05134 bifunctional 3-demeth 99.0 2.4E-09 5.3E-14 105.9 11.6 102 219-322 49-153 (233)
75 TIGR03534 RF_mod_PrmC protein- 99.0 1.1E-08 2.4E-13 101.8 16.0 137 201-360 73-239 (251)
76 PF05401 NodS: Nodulation prot 99.0 1.7E-09 3.7E-14 104.6 9.8 105 214-321 39-147 (201)
77 PRK14121 tRNA (guanine-N(7)-)- 99.0 3.5E-09 7.7E-14 112.7 12.6 101 219-321 123-236 (390)
78 PRK04266 fibrillarin; Provisio 99.0 1.1E-08 2.3E-13 102.0 15.0 134 211-360 67-208 (226)
79 TIGR01983 UbiG ubiquinone bios 99.0 1.1E-08 2.4E-13 100.3 14.9 101 219-321 46-150 (224)
80 TIGR02716 C20_methyl_CrtF C-20 99.0 8.8E-09 1.9E-13 106.5 14.6 110 206-321 139-255 (306)
81 PRK13942 protein-L-isoaspartat 99.0 4.3E-09 9.3E-14 103.6 11.6 109 202-320 62-176 (212)
82 PF08003 Methyltransf_9: Prote 98.9 4.9E-09 1.1E-13 107.4 11.7 111 205-319 104-218 (315)
83 TIGR01177 conserved hypothetic 98.9 1.1E-08 2.3E-13 107.2 14.4 112 207-321 173-295 (329)
84 PRK07580 Mg-protoporphyrin IX 98.9 6.1E-09 1.3E-13 102.3 11.6 111 202-316 46-162 (230)
85 TIGR00080 pimt protein-L-isoas 98.9 9.3E-09 2E-13 101.1 12.6 107 204-320 65-177 (215)
86 TIGR02081 metW methionine bios 98.9 1.1E-08 2.4E-13 98.9 12.7 130 220-360 15-165 (194)
87 PRK14967 putative methyltransf 98.9 1.7E-08 3.6E-13 99.9 13.7 100 220-321 38-160 (223)
88 COG4976 Predicted methyltransf 98.9 2.2E-09 4.7E-14 105.4 7.2 144 208-361 114-264 (287)
89 PRK14968 putative methyltransf 98.9 3.6E-08 7.8E-13 93.5 15.2 101 219-321 24-149 (188)
90 PF13659 Methyltransf_26: Meth 98.9 4E-09 8.6E-14 92.7 6.7 101 220-321 2-116 (117)
91 PRK13256 thiopurine S-methyltr 98.9 2.3E-08 4.9E-13 99.5 12.9 103 219-321 44-164 (226)
92 PTZ00146 fibrillarin; Provisio 98.9 2.2E-08 4.8E-13 102.8 13.2 99 214-319 130-236 (293)
93 PLN03075 nicotianamine synthas 98.9 1.3E-08 2.8E-13 104.9 11.4 102 218-320 123-233 (296)
94 cd02440 AdoMet_MTases S-adenos 98.8 1.6E-08 3.4E-13 83.8 9.1 99 221-319 1-103 (107)
95 TIGR03438 probable methyltrans 98.8 3E-08 6.6E-13 102.7 13.1 103 219-321 64-178 (301)
96 PRK09328 N5-glutamine S-adenos 98.8 9.4E-08 2E-12 96.7 16.2 116 202-320 94-238 (275)
97 PRK14966 unknown domain/N5-glu 98.8 8.1E-08 1.7E-12 103.1 16.4 125 220-363 253-406 (423)
98 PRK00377 cbiT cobalt-precorrin 98.8 7.6E-08 1.7E-12 93.4 14.4 98 219-321 41-146 (198)
99 KOG3010 Methyltransferase [Gen 98.8 1.2E-08 2.6E-13 101.1 8.6 93 220-320 35-137 (261)
100 KOG1271 Methyltransferases [Ge 98.8 6E-08 1.3E-12 92.4 12.7 100 221-321 70-182 (227)
101 COG4123 Predicted O-methyltran 98.8 5.3E-08 1.1E-12 97.8 13.1 144 194-359 24-191 (248)
102 PRK00312 pcm protein-L-isoaspa 98.8 5.1E-08 1.1E-12 95.4 12.2 108 204-321 66-176 (212)
103 PF05219 DREV: DREV methyltran 98.8 8.5E-08 1.8E-12 96.4 13.2 150 190-353 64-224 (265)
104 PF05148 Methyltransf_8: Hypot 98.7 8.9E-08 1.9E-12 93.5 12.0 133 206-371 61-199 (219)
105 PRK07402 precorrin-6B methylas 98.7 1.2E-07 2.6E-12 91.8 12.9 108 206-321 30-143 (196)
106 TIGR00536 hemK_fam HemK family 98.7 2.9E-07 6.3E-12 94.5 16.0 100 220-321 116-245 (284)
107 TIGR00438 rrmJ cell division p 98.7 1.3E-07 2.7E-12 91.0 12.3 92 219-321 33-147 (188)
108 TIGR03533 L3_gln_methyl protei 98.7 4.3E-07 9.3E-12 93.5 16.8 100 220-321 123-252 (284)
109 KOG2361 Predicted methyltransf 98.7 5.2E-08 1.1E-12 96.5 9.2 120 199-323 52-186 (264)
110 PF05891 Methyltransf_PK: AdoM 98.7 1.2E-08 2.6E-13 100.2 4.7 142 218-361 55-200 (218)
111 PF06080 DUF938: Protein of un 98.7 1.5E-07 3.2E-12 92.0 11.5 159 202-369 12-204 (204)
112 PLN02232 ubiquinone biosynthes 98.7 4.6E-08 9.9E-13 92.1 7.7 78 243-321 2-82 (160)
113 TIGR03704 PrmC_rel_meth putati 98.7 7E-07 1.5E-11 90.3 16.3 118 200-321 69-217 (251)
114 KOG3045 Predicted RNA methylas 98.6 2.1E-07 4.5E-12 93.0 11.3 131 206-371 169-305 (325)
115 KOG2940 Predicted methyltransf 98.6 2.5E-08 5.4E-13 98.0 4.7 100 219-321 73-175 (325)
116 PF03291 Pox_MCEL: mRNA cappin 98.6 1.3E-07 2.8E-12 99.3 10.0 104 218-321 62-187 (331)
117 KOG1975 mRNA cap methyltransfe 98.6 1.1E-07 2.5E-12 97.4 9.0 103 219-321 118-238 (389)
118 PRK13943 protein-L-isoaspartat 98.6 2.8E-07 6.1E-12 96.5 12.1 107 204-320 68-180 (322)
119 PF00891 Methyltransf_2: O-met 98.6 2.8E-07 6.1E-12 91.9 10.6 94 218-321 100-200 (241)
120 PRK00811 spermidine synthase; 98.6 6.3E-07 1.4E-11 92.2 13.3 102 218-320 76-191 (283)
121 PRK11805 N5-glutamine S-adenos 98.6 9.2E-07 2E-11 92.1 14.2 100 220-321 135-264 (307)
122 PF01135 PCMT: Protein-L-isoas 98.6 2.9E-07 6.3E-12 90.7 9.8 111 202-321 58-173 (209)
123 smart00650 rADc Ribosomal RNA 98.5 3.5E-07 7.5E-12 86.6 9.0 105 207-319 4-112 (169)
124 PRK10901 16S rRNA methyltransf 98.5 6.5E-07 1.4E-11 97.2 12.2 111 208-321 236-373 (427)
125 PRK14901 16S rRNA methyltransf 98.5 7E-07 1.5E-11 97.1 11.9 111 208-321 244-385 (434)
126 PRK01544 bifunctional N5-gluta 98.5 1.3E-06 2.9E-11 96.7 14.1 122 219-360 139-291 (506)
127 PRK04457 spermidine synthase; 98.5 1.1E-06 2.5E-11 89.3 12.2 100 219-319 67-176 (262)
128 TIGR00563 rsmB ribosomal RNA s 98.5 1E-06 2.3E-11 95.5 12.4 112 207-321 229-369 (426)
129 PRK14904 16S rRNA methyltransf 98.5 5.4E-07 1.2E-11 98.3 9.8 101 219-321 251-378 (445)
130 COG2890 HemK Methylase of poly 98.5 4.6E-06 9.9E-11 85.8 15.9 118 221-359 113-260 (280)
131 TIGR00446 nop2p NOL1/NOP2/sun 98.4 4.4E-07 9.6E-12 92.3 7.8 108 211-321 66-200 (264)
132 PHA03411 putative methyltransf 98.4 1.4E-06 3.1E-11 88.9 11.2 94 220-319 66-182 (279)
133 COG2518 Pcm Protein-L-isoaspar 98.4 1.5E-06 3.3E-11 85.2 10.7 108 204-321 60-170 (209)
134 PF05724 TPMT: Thiopurine S-me 98.4 2.3E-06 5.1E-11 84.9 11.9 98 219-319 38-154 (218)
135 PF02390 Methyltransf_4: Putat 98.4 8.8E-07 1.9E-11 86.4 8.7 100 221-321 20-134 (195)
136 PRK14903 16S rRNA methyltransf 98.4 1.6E-06 3.4E-11 94.3 11.4 111 208-321 229-367 (431)
137 TIGR00417 speE spermidine synt 98.4 4.5E-06 9.8E-11 85.2 13.3 102 218-320 72-186 (270)
138 PRK14902 16S rRNA methyltransf 98.4 1.2E-06 2.6E-11 95.6 9.5 111 207-321 241-380 (444)
139 PRK13168 rumA 23S rRNA m(5)U19 98.3 3.3E-06 7.1E-11 92.1 12.3 116 201-324 282-404 (443)
140 COG2242 CobL Precorrin-6B meth 98.3 1.1E-05 2.5E-10 77.6 14.4 105 208-321 26-136 (187)
141 PLN02366 spermidine synthase 98.3 7.5E-06 1.6E-10 85.3 13.3 102 218-320 91-206 (308)
142 COG0220 Predicted S-adenosylme 98.3 5.8E-06 1.3E-10 82.5 11.3 99 221-321 51-165 (227)
143 PHA03412 putative methyltransf 98.3 4.4E-06 9.6E-11 83.6 10.4 93 219-318 50-160 (241)
144 PRK01581 speE spermidine synth 98.3 5.3E-06 1.2E-10 87.8 11.0 115 205-320 137-268 (374)
145 PRK10909 rsmD 16S rRNA m(2)G96 98.2 1.4E-05 3E-10 78.3 12.9 118 198-321 34-160 (199)
146 PRK03522 rumB 23S rRNA methylu 98.2 1.1E-05 2.3E-10 84.2 12.0 115 203-324 160-278 (315)
147 TIGR00478 tly hemolysin TlyA f 98.2 1.2E-05 2.7E-10 80.3 11.0 141 202-358 60-213 (228)
148 COG2519 GCD14 tRNA(1-methylade 98.2 2.9E-05 6.3E-10 78.1 13.5 105 207-321 85-196 (256)
149 TIGR00479 rumA 23S rRNA (uraci 98.2 1.1E-05 2.4E-10 87.6 11.0 112 203-321 279-397 (431)
150 KOG2899 Predicted methyltransf 98.1 6.5E-06 1.4E-10 81.9 8.2 113 212-326 52-213 (288)
151 PRK03612 spermidine synthase; 98.1 1.5E-05 3.3E-10 88.8 12.2 102 218-320 297-415 (521)
152 PRK10611 chemotaxis methyltran 98.1 6.9E-06 1.5E-10 84.7 8.6 101 220-320 117-262 (287)
153 PF01739 CheR: CheR methyltran 98.1 1.1E-05 2.5E-10 78.7 9.7 103 218-320 31-175 (196)
154 PLN02672 methionine S-methyltr 98.1 4.1E-05 8.8E-10 91.0 15.3 102 219-321 119-279 (1082)
155 PLN02781 Probable caffeoyl-CoA 98.1 1.8E-05 3.9E-10 79.2 10.5 96 220-320 70-178 (234)
156 COG0500 SmtA SAM-dependent met 98.1 3E-05 6.4E-10 66.3 10.0 97 222-321 52-156 (257)
157 COG2521 Predicted archaeal met 98.1 1.7E-05 3.6E-10 78.7 9.1 152 203-370 119-287 (287)
158 PF07942 N2227: N2227-like pro 98.1 7.7E-05 1.7E-09 76.2 14.2 155 204-363 40-243 (270)
159 PRK11727 23S rRNA mA1618 methy 98.0 4.8E-05 1E-09 79.7 12.3 95 200-294 90-201 (321)
160 PF10294 Methyltransf_16: Puta 98.0 3.6E-05 7.9E-10 73.5 10.3 101 218-321 45-157 (173)
161 PRK11783 rlmL 23S rRNA m(2)G24 98.0 2.3E-05 5E-10 90.3 10.4 102 219-321 539-657 (702)
162 PRK15128 23S rRNA m(5)C1962 me 98.0 3.9E-05 8.5E-10 82.6 11.4 102 219-321 221-340 (396)
163 PF08704 GCD14: tRNA methyltra 98.0 0.0001 2.2E-09 74.6 12.9 106 207-321 31-147 (247)
164 TIGR02085 meth_trns_rumB 23S r 98.0 5.4E-05 1.2E-09 81.0 11.6 99 220-323 235-337 (374)
165 PRK01544 bifunctional N5-gluta 97.9 4.1E-05 8.9E-10 85.0 9.7 102 218-321 347-463 (506)
166 COG1041 Predicted DNA modifica 97.9 6.1E-05 1.3E-09 79.0 10.3 111 206-321 187-311 (347)
167 KOG1331 Predicted methyltransf 97.9 7.1E-06 1.5E-10 83.5 2.6 96 219-320 46-143 (293)
168 PRK14896 ksgA 16S ribosomal RN 97.8 5.9E-05 1.3E-09 76.5 9.0 85 202-292 15-101 (258)
169 KOG3178 Hydroxyindole-O-methyl 97.8 9.2E-05 2E-09 77.5 10.2 95 219-321 178-276 (342)
170 COG4122 Predicted O-methyltran 97.8 0.00035 7.5E-09 69.4 13.5 97 219-320 60-166 (219)
171 KOG2904 Predicted methyltransf 97.8 0.00022 4.8E-09 72.3 11.8 120 201-321 130-286 (328)
172 TIGR00755 ksgA dimethyladenosi 97.8 0.00014 3E-09 73.4 10.5 83 204-292 17-104 (253)
173 PRK00274 ksgA 16S ribosomal RN 97.7 7.5E-05 1.6E-09 76.4 8.0 83 204-291 30-114 (272)
174 PLN02476 O-methyltransferase 97.7 0.00016 3.5E-09 74.3 10.2 96 220-320 120-228 (278)
175 KOG1269 SAM-dependent methyltr 97.7 5.3E-05 1.2E-09 80.6 6.9 97 221-319 113-214 (364)
176 PF01170 UPF0020: Putative RNA 97.7 0.00034 7.4E-09 67.3 11.7 107 207-319 19-150 (179)
177 COG2263 Predicted RNA methylas 97.7 0.00034 7.4E-09 67.6 11.4 89 217-309 44-136 (198)
178 PF11968 DUF3321: Putative met 97.7 0.00043 9.4E-09 68.3 11.9 117 220-362 53-181 (219)
179 PF01596 Methyltransf_3: O-met 97.7 0.00025 5.4E-09 69.8 10.2 96 220-320 47-155 (205)
180 PTZ00338 dimethyladenosine tra 97.6 0.00034 7.4E-09 72.5 11.1 86 203-292 23-111 (294)
181 COG1352 CheR Methylase of chem 97.6 0.00025 5.4E-09 72.6 9.9 103 218-320 96-241 (268)
182 PF12147 Methyltransf_20: Puta 97.6 0.00092 2E-08 68.7 13.7 141 217-362 134-298 (311)
183 PLN02823 spermine synthase 97.6 0.00023 5.1E-09 75.1 9.8 102 218-320 103-220 (336)
184 COG3963 Phospholipid N-methylt 97.6 0.00023 5.1E-09 67.4 8.4 115 204-320 36-156 (194)
185 KOG1499 Protein arginine N-met 97.6 0.00023 5E-09 74.5 9.1 99 218-318 60-165 (346)
186 TIGR00095 RNA methyltransferas 97.6 0.0015 3.2E-08 63.4 13.9 100 219-321 50-160 (189)
187 PF01234 NNMT_PNMT_TEMT: NNMT/ 97.6 0.00014 3.1E-09 73.8 7.0 152 204-360 42-237 (256)
188 PF01728 FtsJ: FtsJ-like methy 97.6 0.00063 1.4E-08 64.8 11.0 109 201-321 5-140 (181)
189 PF05185 PRMT5: PRMT5 arginine 97.5 0.00022 4.9E-09 78.0 7.5 96 219-317 187-294 (448)
190 KOG3191 Predicted N6-DNA-methy 97.5 0.0018 3.8E-08 62.4 12.1 102 219-322 44-170 (209)
191 KOG1661 Protein-L-isoaspartate 97.4 0.00071 1.5E-08 66.4 9.4 102 207-320 71-193 (237)
192 PF02475 Met_10: Met-10+ like- 97.4 0.00057 1.2E-08 67.1 8.7 128 179-317 66-199 (200)
193 PRK04338 N(2),N(2)-dimethylgua 97.4 0.00077 1.7E-08 72.4 10.3 95 220-320 59-158 (382)
194 KOG3987 Uncharacterized conser 97.4 0.00021 4.5E-09 69.8 5.2 116 190-319 84-206 (288)
195 PF02527 GidB: rRNA small subu 97.4 0.0047 1E-07 59.9 14.5 92 221-319 51-147 (184)
196 PRK04148 hypothetical protein; 97.4 0.0011 2.4E-08 61.1 9.5 90 219-319 17-108 (134)
197 PF02384 N6_Mtase: N-6 DNA Met 97.3 0.00052 1.1E-08 71.1 7.9 118 201-321 31-184 (311)
198 PLN02589 caffeoyl-CoA O-methyl 97.3 0.00078 1.7E-08 68.2 7.9 95 220-319 81-189 (247)
199 PRK05031 tRNA (uracil-5-)-meth 97.3 0.0015 3.2E-08 69.7 10.3 95 221-322 209-322 (362)
200 TIGR02143 trmA_only tRNA (urac 97.2 0.0017 3.6E-08 69.1 10.4 112 201-322 183-313 (353)
201 PRK11933 yebU rRNA (cytosine-C 97.2 0.0025 5.5E-08 70.2 11.8 103 218-321 113-243 (470)
202 COG0293 FtsJ 23S rRNA methylas 97.2 0.0031 6.8E-08 62.0 11.1 112 197-321 25-160 (205)
203 KOG2352 Predicted spermine/spe 97.2 0.0022 4.7E-08 69.9 10.7 100 221-321 51-162 (482)
204 COG0421 SpeE Spermidine syntha 97.1 0.0025 5.5E-08 65.7 9.9 100 215-320 73-190 (282)
205 PF09243 Rsm22: Mitochondrial 97.1 0.0049 1.1E-07 63.3 11.9 99 218-322 33-141 (274)
206 PF01564 Spermine_synth: Sperm 97.0 0.0028 6E-08 64.1 8.9 103 217-320 75-191 (246)
207 TIGR02987 met_A_Alw26 type II 97.0 0.0055 1.2E-07 68.4 11.8 75 219-293 32-123 (524)
208 PF03602 Cons_hypoth95: Conser 96.9 0.0031 6.8E-08 61.0 8.3 119 199-321 23-154 (183)
209 PRK00536 speE spermidine synth 96.9 0.0078 1.7E-07 61.5 11.5 92 215-320 69-171 (262)
210 COG4627 Uncharacterized protei 96.9 0.00028 6E-09 66.1 0.8 85 222-325 6-91 (185)
211 COG2265 TrmA SAM-dependent met 96.8 0.007 1.5E-07 66.1 10.8 113 204-323 281-399 (432)
212 PRK11760 putative 23S rRNA C24 96.8 0.045 9.7E-07 57.9 15.8 92 218-319 211-304 (357)
213 COG0030 KsgA Dimethyladenosine 96.8 0.012 2.5E-07 60.1 11.0 86 203-292 17-105 (259)
214 TIGR03439 methyl_EasF probable 96.7 0.013 2.8E-07 61.5 11.3 102 219-320 77-197 (319)
215 PF08123 DOT1: Histone methyla 96.6 0.0051 1.1E-07 60.7 7.0 120 195-318 21-156 (205)
216 COG1092 Predicted SAM-dependen 96.5 0.016 3.4E-07 62.5 10.8 102 219-321 218-337 (393)
217 KOG3420 Predicted RNA methylas 96.5 0.004 8.6E-08 58.0 5.3 74 218-292 48-124 (185)
218 KOG0820 Ribosomal RNA adenine 96.5 0.0081 1.8E-07 61.2 7.9 85 204-292 46-133 (315)
219 KOG1663 O-methyltransferase [S 96.5 0.021 4.6E-07 56.9 10.3 95 221-320 76-183 (237)
220 KOG2798 Putative trehalase [Ca 96.4 0.025 5.5E-07 58.7 10.8 79 281-361 258-336 (369)
221 COG0357 GidB Predicted S-adeno 96.4 0.053 1.1E-06 53.9 12.7 94 219-319 68-167 (215)
222 KOG1500 Protein arginine N-met 96.3 0.012 2.6E-07 61.4 8.1 99 218-319 177-281 (517)
223 KOG3201 Uncharacterized conser 96.3 0.00075 1.6E-08 63.7 -0.7 134 219-371 30-176 (201)
224 KOG2915 tRNA(1-methyladenosine 96.3 0.082 1.8E-06 54.1 13.4 126 205-360 94-233 (314)
225 COG2520 Predicted methyltransf 96.3 0.041 8.9E-07 58.2 11.8 117 195-321 169-290 (341)
226 COG3897 Predicted methyltransf 96.2 0.014 3E-07 56.9 6.9 99 218-322 79-180 (218)
227 COG1189 Predicted rRNA methyla 96.1 0.11 2.5E-06 52.1 13.2 144 206-359 68-221 (245)
228 TIGR00308 TRM1 tRNA(guanine-26 96.0 0.018 3.9E-07 61.8 7.7 95 220-320 46-147 (374)
229 COG0144 Sun tRNA and rRNA cyto 96.0 0.063 1.4E-06 57.3 11.8 109 210-321 150-289 (355)
230 PRK11783 rlmL 23S rRNA m(2)G24 96.0 0.054 1.2E-06 62.8 12.0 102 219-321 191-348 (702)
231 COG0742 N6-adenine-specific me 95.9 0.13 2.7E-06 50.1 12.3 135 185-321 11-155 (187)
232 PF05958 tRNA_U5-meth_tr: tRNA 95.9 0.017 3.7E-07 61.4 7.0 94 221-321 199-311 (352)
233 COG4798 Predicted methyltransf 95.9 0.034 7.4E-07 54.3 8.2 142 212-361 44-204 (238)
234 PRK00050 16S rRNA m(4)C1402 me 95.7 0.014 3E-07 60.7 5.2 85 204-292 7-100 (296)
235 PF01269 Fibrillarin: Fibrilla 95.7 0.056 1.2E-06 53.9 9.1 99 214-320 71-178 (229)
236 PF10672 Methyltrans_SAM: S-ad 95.7 0.042 9.2E-07 56.9 8.6 102 219-321 124-239 (286)
237 KOG1709 Guanidinoacetate methy 95.6 0.047 1E-06 54.1 8.2 109 202-319 88-205 (271)
238 COG0116 Predicted N6-adenine-s 95.5 0.12 2.7E-06 55.3 11.2 98 220-321 193-345 (381)
239 PF00398 RrnaAD: Ribosomal RNA 95.2 0.042 9.2E-07 55.9 6.6 101 201-312 15-123 (262)
240 PF01189 Nol1_Nop2_Fmu: NOL1/N 94.7 0.06 1.3E-06 55.6 6.3 102 219-321 86-220 (283)
241 COG4262 Predicted spermidine s 94.6 0.23 4.9E-06 52.8 10.1 137 184-321 253-408 (508)
242 PLN02668 indole-3-acetate carb 94.6 0.13 2.8E-06 55.4 8.5 78 219-297 64-176 (386)
243 PF03492 Methyltransf_7: SAM d 94.3 0.22 4.8E-06 52.7 9.6 82 215-297 13-121 (334)
244 PF05971 Methyltransf_10: Prot 94.3 0.21 4.6E-06 52.0 9.1 93 200-292 81-187 (299)
245 PF01861 DUF43: Protein of unk 94.1 0.89 1.9E-05 46.0 12.6 141 201-359 27-175 (243)
246 PF04672 Methyltransf_19: S-ad 94.0 0.16 3.5E-06 52.1 7.4 101 218-321 68-191 (267)
247 PF09445 Methyltransf_15: RNA 94.0 0.11 2.3E-06 49.6 5.7 69 221-290 2-77 (163)
248 COG5459 Predicted rRNA methyla 94.0 0.34 7.5E-06 51.3 9.8 100 219-321 114-226 (484)
249 KOG2187 tRNA uracil-5-methyltr 94.0 0.066 1.4E-06 59.0 4.7 72 201-275 368-442 (534)
250 PRK13699 putative methylase; P 93.9 0.18 4E-06 50.4 7.6 81 269-371 5-101 (227)
251 COG4076 Predicted RNA methylas 93.7 0.069 1.5E-06 51.9 3.9 91 221-318 35-133 (252)
252 PF06859 Bin3: Bicoid-interact 93.2 0.043 9.3E-07 48.8 1.4 46 282-329 1-51 (110)
253 COG1889 NOP1 Fibrillarin-like 92.8 2.8 6.1E-05 41.5 13.3 96 219-320 77-180 (231)
254 KOG3115 Methyltransferase-like 92.6 0.2 4.4E-06 49.3 5.2 97 221-320 63-183 (249)
255 PF13679 Methyltransf_32: Meth 92.6 0.31 6.7E-06 44.8 6.3 95 218-321 25-132 (141)
256 COG1064 AdhP Zn-dependent alco 92.4 0.64 1.4E-05 49.3 9.1 93 219-322 167-261 (339)
257 PF04816 DUF633: Family of unk 92.2 0.88 1.9E-05 44.9 9.3 117 222-361 1-123 (205)
258 TIGR01444 fkbM_fam methyltrans 91.7 0.38 8.2E-06 43.5 5.8 35 221-255 1-39 (143)
259 PF13578 Methyltransf_24: Meth 91.5 0.08 1.7E-06 45.7 1.1 93 223-319 1-104 (106)
260 PF03059 NAS: Nicotianamine sy 91.3 1.7 3.7E-05 44.9 10.7 100 219-320 121-230 (276)
261 COG3129 Predicted SAM-dependen 90.7 0.69 1.5E-05 46.5 6.7 95 199-293 55-164 (292)
262 PF06962 rRNA_methylase: Putat 89.8 1.8 3.8E-05 40.3 8.3 81 241-321 2-93 (140)
263 PF10354 DUF2431: Domain of un 89.5 3.5 7.5E-05 39.3 10.4 120 225-360 3-150 (166)
264 PRK11524 putative methyltransf 89.3 0.87 1.9E-05 46.9 6.6 55 267-321 10-81 (284)
265 KOG2198 tRNA cytosine-5-methyl 89.0 3.4 7.4E-05 44.2 10.7 101 219-321 156-297 (375)
266 PF03269 DUF268: Caenorhabditi 88.6 0.34 7.5E-06 46.1 2.7 42 280-321 61-112 (177)
267 KOG1122 tRNA and rRNA cytosine 88.6 2.1 4.6E-05 46.5 8.9 106 214-321 237-372 (460)
268 COG0286 HsdM Type I restrictio 88.3 4.8 0.00011 44.9 12.0 119 200-321 170-327 (489)
269 KOG4589 Cell division protein 87.6 0.96 2.1E-05 44.2 5.1 91 219-320 70-184 (232)
270 KOG1099 SAM-dependent methyltr 87.4 1 2.2E-05 45.3 5.3 91 219-320 42-163 (294)
271 PF07757 AdoMet_MTase: Predict 87.0 0.85 1.8E-05 40.6 4.0 28 219-246 59-86 (112)
272 PRK10742 putative methyltransf 86.5 3.6 7.8E-05 41.9 8.8 86 207-294 77-176 (250)
273 cd08283 FDH_like_1 Glutathione 86.4 4.6 0.0001 43.0 10.2 99 219-321 185-307 (386)
274 cd08254 hydroxyacyl_CoA_DH 6-h 86.1 3.8 8.2E-05 41.9 9.1 92 220-321 167-264 (338)
275 COG4301 Uncharacterized conser 85.1 11 0.00024 38.6 11.2 101 220-321 80-194 (321)
276 PF07091 FmrO: Ribosomal RNA m 84.8 3.4 7.3E-05 42.1 7.6 128 219-356 106-238 (251)
277 KOG0822 Protein kinase inhibit 83.5 3.6 7.9E-05 45.9 7.7 100 219-319 368-477 (649)
278 KOG2730 Methylase [General fun 82.4 2.9 6.3E-05 41.9 5.9 87 221-315 97-197 (263)
279 cd08230 glucose_DH Glucose deh 81.4 5.9 0.00013 41.4 8.3 94 219-321 173-270 (355)
280 PRK09880 L-idonate 5-dehydroge 80.9 7.2 0.00016 40.7 8.7 91 219-321 170-267 (343)
281 COG1565 Uncharacterized conser 80.2 3.4 7.3E-05 44.2 5.8 67 181-249 42-120 (370)
282 KOG2539 Mitochondrial/chloropl 79.7 4.3 9.4E-05 44.7 6.6 103 219-321 201-316 (491)
283 KOG1562 Spermidine synthase [A 79.6 3.1 6.6E-05 43.4 5.2 102 217-320 120-236 (337)
284 PF03514 GRAS: GRAS domain fam 79.1 12 0.00026 40.2 9.9 99 221-319 113-243 (374)
285 KOG2793 Putative N2,N2-dimethy 78.5 11 0.00025 38.3 8.8 100 219-321 87-200 (248)
286 PRK09424 pntA NAD(P) transhydr 78.0 13 0.00027 41.9 9.8 95 219-321 165-286 (509)
287 TIGR02822 adh_fam_2 zinc-bindi 77.8 17 0.00037 37.8 10.3 88 219-321 166-255 (329)
288 COG2384 Predicted SAM-dependen 76.9 42 0.00091 33.7 12.0 130 204-360 6-141 (226)
289 PF04989 CmcI: Cephalosporin h 75.9 7.7 0.00017 38.5 6.6 98 220-320 34-147 (206)
290 PF00107 ADH_zinc_N: Zinc-bind 75.0 4.7 0.0001 35.4 4.6 85 228-322 1-91 (130)
291 TIGR02825 B4_12hDH leukotriene 73.3 26 0.00055 36.0 10.2 92 219-321 139-238 (325)
292 KOG1596 Fibrillarin and relate 73.2 12 0.00027 38.1 7.3 99 214-320 154-261 (317)
293 PRK01747 mnmC bifunctional tRN 70.6 10 0.00022 43.7 7.0 36 281-318 165-204 (662)
294 PF04445 SAM_MT: Putative SAM- 70.4 9.2 0.0002 38.6 5.8 86 207-294 64-163 (234)
295 TIGR00006 S-adenosyl-methyltra 70.2 13 0.00029 39.0 7.1 84 204-290 8-100 (305)
296 KOG2671 Putative RNA methylase 70.0 8.4 0.00018 41.1 5.5 107 214-323 206-357 (421)
297 COG0604 Qor NADPH:quinone redu 69.8 20 0.00044 37.7 8.5 102 208-322 134-243 (326)
298 cd08234 threonine_DH_like L-th 69.7 29 0.00062 35.5 9.6 91 220-321 161-258 (334)
299 cd08245 CAD Cinnamyl alcohol d 69.6 39 0.00085 34.5 10.5 93 219-321 163-257 (330)
300 cd05188 MDR Medium chain reduc 68.9 28 0.00061 33.8 8.9 90 219-321 135-233 (271)
301 TIGR00027 mthyl_TIGR00027 meth 68.8 79 0.0017 32.3 12.3 102 219-320 82-197 (260)
302 PHA01634 hypothetical protein 67.8 32 0.00069 31.9 8.1 30 219-248 29-61 (156)
303 PF01555 N6_N4_Mtase: DNA meth 67.4 11 0.00023 36.2 5.5 22 300-321 36-57 (231)
304 TIGR03451 mycoS_dep_FDH mycoth 66.8 31 0.00067 36.1 9.3 92 219-321 177-277 (358)
305 cd08232 idonate-5-DH L-idonate 66.6 30 0.00065 35.6 9.0 92 219-321 166-263 (339)
306 cd08281 liver_ADH_like1 Zinc-d 66.2 27 0.00059 36.8 8.7 92 220-321 193-291 (371)
307 KOG2920 Predicted methyltransf 65.7 5.2 0.00011 41.4 3.0 39 282-320 196-234 (282)
308 PF02005 TRM: N2,N2-dimethylgu 65.4 24 0.00052 38.2 8.1 95 220-320 51-154 (377)
309 PF11312 DUF3115: Protein of u 65.2 13 0.00027 39.2 5.7 61 265-325 176-247 (315)
310 PLN03154 putative allyl alcoho 65.2 38 0.00083 35.5 9.5 92 219-321 159-259 (348)
311 COG1063 Tdh Threonine dehydrog 65.0 24 0.00053 37.3 8.1 89 221-321 171-270 (350)
312 PF01555 N6_N4_Mtase: DNA meth 64.5 11 0.00024 36.1 5.0 44 202-248 178-223 (231)
313 PF02636 Methyltransf_28: Puta 62.6 15 0.00033 36.9 5.7 71 220-296 20-109 (252)
314 PRK15001 SAM-dependent 23S rib 61.9 91 0.002 33.8 11.7 92 221-320 47-142 (378)
315 cd08239 THR_DH_like L-threonin 61.1 41 0.0009 34.6 8.8 93 219-321 164-263 (339)
316 TIGR03366 HpnZ_proposed putati 60.7 45 0.00097 33.6 8.8 90 219-321 121-219 (280)
317 PF13334 DUF4094: Domain of un 58.1 6.8 0.00015 34.1 1.9 20 27-46 4-23 (95)
318 PRK11524 putative methyltransf 57.9 18 0.00039 37.2 5.4 47 202-251 195-243 (284)
319 cd08294 leukotriene_B4_DH_like 57.9 68 0.0015 32.6 9.7 91 219-321 144-242 (329)
320 cd00315 Cyt_C5_DNA_methylase C 57.6 21 0.00046 36.6 5.8 64 221-290 2-70 (275)
321 COG1867 TRM1 N2,N2-dimethylgua 57.6 28 0.00062 37.4 6.8 97 219-320 53-154 (380)
322 KOG4058 Uncharacterized conser 57.3 55 0.0012 31.1 7.8 83 202-287 58-145 (199)
323 PLN02740 Alcohol dehydrogenase 57.1 58 0.0013 34.5 9.3 93 219-321 199-301 (381)
324 TIGR01202 bchC 2-desacetyl-2-h 56.4 36 0.00077 35.0 7.3 83 219-321 145-232 (308)
325 TIGR00561 pntA NAD(P) transhyd 56.0 28 0.00061 39.2 6.8 93 219-319 164-283 (511)
326 cd08293 PTGR2 Prostaglandin re 55.8 69 0.0015 32.9 9.4 95 214-320 150-254 (345)
327 KOG0024 Sorbitol dehydrogenase 55.6 33 0.00072 36.4 6.8 90 219-320 170-273 (354)
328 cd08255 2-desacetyl-2-hydroxye 55.5 71 0.0015 31.6 9.1 91 219-321 98-191 (277)
329 PRK13699 putative methylase; P 55.4 23 0.00049 35.4 5.5 33 219-251 164-198 (227)
330 cd08237 ribitol-5-phosphate_DH 55.1 59 0.0013 33.9 8.8 88 219-321 164-257 (341)
331 cd08295 double_bond_reductase_ 55.0 82 0.0018 32.5 9.8 92 219-321 152-252 (338)
332 cd08261 Zn_ADH7 Alcohol dehydr 54.3 70 0.0015 32.8 9.1 92 220-321 161-259 (337)
333 PLN02586 probable cinnamyl alc 53.7 42 0.00092 35.4 7.5 92 219-321 184-279 (360)
334 PLN02827 Alcohol dehydrogenase 53.0 55 0.0012 34.8 8.3 93 219-321 194-296 (378)
335 PF05711 TylF: Macrocin-O-meth 51.5 1.5E+02 0.0032 30.3 10.6 54 265-321 158-213 (248)
336 TIGR03201 dearomat_had 6-hydro 49.7 92 0.002 32.4 9.2 93 219-321 167-273 (349)
337 cd08242 MDR_like Medium chain 49.6 1.2E+02 0.0026 30.8 9.9 88 219-320 156-245 (319)
338 PF10237 N6-adenineMlase: Prob 48.7 1.6E+02 0.0034 28.1 9.7 105 204-321 11-124 (162)
339 TIGR02818 adh_III_F_hyde S-(hy 48.3 92 0.002 32.8 9.0 93 219-321 186-288 (368)
340 PF11899 DUF3419: Protein of u 48.0 27 0.00058 37.9 4.9 55 265-320 276-334 (380)
341 cd05278 FDH_like Formaldehyde 47.8 76 0.0016 32.5 8.2 91 219-320 168-267 (347)
342 PRK10309 galactitol-1-phosphat 47.0 81 0.0018 32.6 8.3 93 219-321 161-261 (347)
343 cd08277 liver_alcohol_DH_like 46.3 96 0.0021 32.5 8.8 92 220-321 186-287 (365)
344 cd08300 alcohol_DH_class_III c 46.1 1.1E+02 0.0024 32.2 9.2 93 219-321 187-289 (368)
345 cd08298 CAD2 Cinnamyl alcohol 45.8 1.5E+02 0.0032 30.2 9.9 85 221-320 170-256 (329)
346 PF13051 DUF3912: Protein of u 45.5 4.7 0.0001 31.7 -0.9 10 523-532 57-66 (68)
347 cd05285 sorbitol_DH Sorbitol d 43.9 1.2E+02 0.0027 31.2 9.1 91 220-321 164-266 (343)
348 PF14740 DUF4471: Domain of un 43.6 40 0.00086 35.2 5.2 66 280-358 220-285 (289)
349 KOG2651 rRNA adenine N-6-methy 42.6 51 0.0011 35.8 5.8 30 219-248 154-184 (476)
350 cd08231 MDR_TM0436_like Hypoth 42.4 2.2E+02 0.0047 29.6 10.7 92 219-321 178-281 (361)
351 cd00401 AdoHcyase S-adenosyl-L 41.4 68 0.0015 35.2 6.8 97 205-321 189-290 (413)
352 PTZ00357 methyltransferase; Pr 40.8 1.2E+02 0.0027 35.5 8.7 94 221-315 703-830 (1072)
353 cd08236 sugar_DH NAD(P)-depend 40.7 1.6E+02 0.0034 30.2 9.2 91 220-321 161-259 (343)
354 KOG1501 Arginine N-methyltrans 40.4 92 0.002 34.6 7.4 44 221-265 69-115 (636)
355 cd08285 NADP_ADH NADP(H)-depen 40.0 1.4E+02 0.003 30.9 8.8 91 219-320 167-266 (351)
356 cd08243 quinone_oxidoreductase 39.7 1.6E+02 0.0035 29.4 8.9 91 219-321 143-239 (320)
357 TIGR00497 hsdM type I restrict 38.9 2.1E+02 0.0045 32.0 10.4 117 204-321 203-356 (501)
358 PLN02178 cinnamyl-alcohol dehy 38.4 84 0.0018 33.5 6.9 92 219-321 179-274 (375)
359 KOG1227 Putative methyltransfe 38.0 16 0.00035 38.3 1.3 126 179-315 157-290 (351)
360 cd08301 alcohol_DH_plants Plan 37.9 1.6E+02 0.0035 30.8 8.9 93 219-321 188-290 (369)
361 KOG3924 Putative protein methy 36.6 1.4E+02 0.003 32.6 8.0 122 195-321 171-309 (419)
362 cd05281 TDH Threonine dehydrog 36.1 1.7E+02 0.0038 30.0 8.7 92 219-321 164-263 (341)
363 TIGR02819 fdhA_non_GSH formald 36.0 2.5E+02 0.0055 30.1 10.2 98 220-321 187-300 (393)
364 cd08233 butanediol_DH_like (2R 34.8 2.6E+02 0.0057 28.8 9.8 93 219-321 173-273 (351)
365 cd08241 QOR1 Quinone oxidoredu 34.7 4.3E+02 0.0094 26.0 11.1 91 219-321 140-239 (323)
366 cd08278 benzyl_alcohol_DH Benz 34.6 1.9E+02 0.0042 30.3 8.9 91 219-321 187-286 (365)
367 PF06072 Herpes_US9: Alphaherp 34.2 45 0.00098 26.6 2.9 19 24-42 38-56 (60)
368 PF07629 DUF1590: Protein of u 34.1 23 0.0005 24.0 1.1 20 129-148 5-24 (32)
369 TIGR00692 tdh L-threonine 3-de 34.0 2.1E+02 0.0045 29.4 8.9 92 220-321 163-262 (340)
370 PLN02514 cinnamyl-alcohol dehy 33.8 2E+02 0.0043 30.1 8.8 33 282-321 244-276 (357)
371 PF05430 Methyltransf_30: S-ad 33.2 69 0.0015 29.1 4.5 73 265-360 32-109 (124)
372 cd08279 Zn_ADH_class_III Class 32.9 2.4E+02 0.0052 29.4 9.3 91 220-321 184-283 (363)
373 cd08274 MDR9 Medium chain dehy 32.7 2.5E+02 0.0054 28.7 9.2 90 219-321 178-274 (350)
374 PRK06701 short chain dehydroge 32.6 2.4E+02 0.0053 28.5 9.0 103 219-321 46-182 (290)
375 KOG1253 tRNA methyltransferase 32.4 28 0.00062 38.8 2.1 97 219-320 110-216 (525)
376 PF08351 DUF1726: Domain of un 31.5 26 0.00056 30.2 1.3 40 280-323 9-48 (92)
377 KOG2352 Predicted spermine/spe 30.6 1.1E+02 0.0025 34.0 6.4 105 218-323 295-419 (482)
378 cd05283 CAD1 Cinnamyl alcohol 30.4 3.1E+02 0.0067 28.2 9.4 91 221-321 172-264 (337)
379 PRK10083 putative oxidoreducta 30.3 3.1E+02 0.0067 28.0 9.4 93 219-321 161-260 (339)
380 cd01842 SGNH_hydrolase_like_5 30.2 2.4E+02 0.0053 27.5 7.8 43 278-320 46-99 (183)
381 cd08266 Zn_ADH_like1 Alcohol d 29.4 4.7E+02 0.01 26.1 10.5 92 219-321 167-266 (342)
382 cd08263 Zn_ADH10 Alcohol dehyd 28.9 2E+02 0.0043 30.0 7.8 35 280-321 254-288 (367)
383 cd08289 MDR_yhfp_like Yhfp put 28.6 2.3E+02 0.005 28.6 8.1 91 220-321 148-244 (326)
384 cd08270 MDR4 Medium chain dehy 28.4 3.5E+02 0.0075 26.9 9.2 88 219-321 133-223 (305)
385 COG3414 SgaB Phosphotransferas 28.1 2.4E+02 0.0051 24.4 6.7 57 253-321 20-76 (93)
386 COG0287 TyrA Prephenate dehydr 28.0 1.9E+02 0.0041 30.0 7.2 89 221-319 5-97 (279)
387 PF04072 LCM: Leucine carboxyl 27.8 1.7E+02 0.0037 27.8 6.5 40 219-258 79-120 (183)
388 PF01558 POR: Pyruvate ferredo 27.6 1.3E+02 0.0028 28.2 5.6 34 279-321 54-87 (173)
389 cd08265 Zn_ADH3 Alcohol dehydr 27.5 3.5E+02 0.0077 28.5 9.5 36 280-321 273-308 (384)
390 PLN03193 beta-1,3-galactosyltr 27.4 47 0.001 36.3 2.7 28 19-46 12-39 (408)
391 COG0270 Dcm Site-specific DNA 27.1 4.7E+02 0.01 27.4 10.2 97 220-319 4-115 (328)
392 PRK05396 tdh L-threonine 3-deh 26.6 3.1E+02 0.0068 28.1 8.7 92 219-321 164-264 (341)
393 PF14881 Tubulin_3: Tubulin do 26.4 30 0.00065 33.5 0.9 63 444-509 44-118 (180)
394 cd08296 CAD_like Cinnamyl alco 26.4 4.7E+02 0.01 26.7 10.0 92 219-321 164-260 (333)
395 COG3510 CmcI Cephalosporin hyd 25.7 3.4E+02 0.0074 27.1 7.9 96 220-321 71-181 (237)
396 PF01795 Methyltransf_5: MraW 25.6 2.8E+02 0.006 29.4 7.9 52 204-262 8-63 (310)
397 PF06460 NSP13: Coronavirus NS 25.3 3E+02 0.0065 28.6 7.8 107 207-324 47-173 (299)
398 COG0686 Ald Alanine dehydrogen 25.3 1.7E+02 0.0036 31.3 6.1 96 220-320 169-268 (371)
399 PRK09489 rsmC 16S ribosomal RN 25.2 5.8E+02 0.013 27.1 10.5 90 220-321 21-113 (342)
400 cd05565 PTS_IIB_lactose PTS_II 24.4 1E+02 0.0022 27.0 3.8 65 251-322 16-80 (99)
401 COG5379 BtaA S-adenosylmethion 23.6 1.5E+02 0.0032 31.4 5.3 49 217-265 62-112 (414)
402 cd05286 QOR2 Quinone oxidoredu 23.1 5.2E+02 0.011 25.3 9.3 90 220-321 138-236 (320)
403 cd08240 6_hydroxyhexanoate_dh_ 22.9 3.1E+02 0.0068 28.2 7.9 33 282-321 243-275 (350)
404 KOG1197 Predicted quinone oxid 22.8 2.9E+02 0.0064 28.8 7.1 98 210-320 140-245 (336)
405 cd05289 MDR_like_2 alcohol deh 22.7 7.2E+02 0.016 24.2 10.3 90 219-321 145-239 (309)
406 cd08286 FDH_like_ADH2 formalde 22.7 4.8E+02 0.01 26.7 9.2 35 280-321 233-267 (345)
407 cd05564 PTS_IIB_chitobiose_lic 22.6 1.2E+02 0.0025 26.1 3.8 61 254-321 18-78 (96)
408 cd05279 Zn_ADH1 Liver alcohol 22.3 3.6E+02 0.0077 28.2 8.2 34 281-321 252-286 (365)
409 cd08246 crotonyl_coA_red croto 22.2 4.8E+02 0.01 27.5 9.3 32 282-321 285-316 (393)
410 cd08267 MDR1 Medium chain dehy 22.1 7.7E+02 0.017 24.3 10.9 93 219-321 144-241 (319)
411 PF14314 Methyltrans_Mon: Viru 22.0 2.2E+02 0.0047 33.4 6.8 42 195-239 302-343 (675)
412 TIGR00518 alaDH alanine dehydr 22.0 1.3E+02 0.0029 32.2 5.0 96 219-320 167-267 (370)
413 PF05206 TRM13: Methyltransfer 21.8 1.4E+02 0.003 30.7 4.7 28 220-247 20-56 (259)
414 PRK09548 PTS system ascorbate- 21.8 1.7E+02 0.0037 33.7 5.8 58 220-292 507-564 (602)
415 PRK06274 indolepyruvate oxidor 21.7 3.8E+02 0.0082 25.6 7.7 33 280-321 65-97 (197)
416 PF11899 DUF3419: Protein of u 21.4 1.8E+02 0.0039 31.6 5.8 51 210-262 29-81 (380)
417 PRK10310 PTS system galactitol 21.1 88 0.0019 26.8 2.7 32 259-290 27-58 (94)
418 PRK10299 PhoPQ regulatory prot 20.9 1E+02 0.0022 23.4 2.6 22 19-40 3-24 (47)
419 TIGR02175 PorC_KorC 2-oxoacid: 20.7 4E+02 0.0086 25.2 7.4 35 277-320 61-97 (177)
420 COG0863 DNA modification methy 20.6 2E+02 0.0044 29.0 5.8 48 301-370 80-127 (302)
421 KOG2912 Predicted DNA methylas 20.2 1.4E+02 0.0029 32.0 4.3 49 203-251 84-139 (419)
422 PTZ00354 alcohol dehydrogenase 20.0 6.7E+02 0.014 25.1 9.5 91 219-320 141-240 (334)
No 1
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=100.00 E-value=7e-141 Score=1117.31 Aligned_cols=426 Identities=61% Similarity=1.155 Sum_probs=412.4
Q ss_pred CCcCCCCchhhhcc--ccccchhhccCCCCCCCCCccccCCCCCCCCCCCCCCccccccccCCCCchhhHHHhhcceeee
Q 009069 106 ENVPCEDTHRSLKF--DRDRLIYRERHCPEKTELLKCRVPAPHGYTVPFRWPESRQFAWYANVPHKELTVEKKNQNWVRF 183 (544)
Q Consensus 106 ~y~pC~d~~~~~~~--~~~~~~~~er~C~p~~~r~~Clvp~P~~y~~P~~wP~Srd~~w~~n~p~~~L~~~k~~q~w~~~ 183 (544)
||+||+|+.+++++ .+++++|||||||+.++|++||||+|++|++||+||+|||++||+|+||++|+++|+.|+|+..
T Consensus 1 dy~PC~D~~~~~~~~~~~~~~~~rERhCP~~~~~~~CLVp~P~gYk~P~~WP~SRd~iW~~Nvph~~L~~~K~~qnWv~~ 80 (506)
T PF03141_consen 1 DYIPCLDNSRAIKFLLSRERMEHRERHCPPPEERLRCLVPPPKGYKTPIPWPKSRDYIWYANVPHTKLAEEKADQNWVRV 80 (506)
T ss_pred CCcCCCCHHHHHhhccCcccccEeeccCcCCCCCCccccCCCccCCCCCCCCcccceeeecccCchHHhhhcccccceee
Confidence 79999999999999 8899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCceecCCCCCCCcccHHHHHHHHHHHhcc--cCCCCCEEEEeCCCCcHHHHHHhhCCcEEEeCCccchHHHHHHHHHH
Q 009069 184 QGDRFSFPGGGTMFPRGADAYIDDIGKLINL--KDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALE 261 (544)
Q Consensus 184 ~ge~~~F~g~g~~F~~ga~~~i~~L~~lL~l--~~g~~r~VLDIGCGtG~~a~~La~~~V~~vdisp~dls~a~v~~A~e 261 (544)
+|+.|.|||+|++|+.|++.|+++|.++++. ..+.+|++||||||+|+|+++|++++|+++++++++.+++++|+|++
T Consensus 81 ~gd~~~FPgggt~F~~Ga~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfale 160 (506)
T PF03141_consen 81 EGDKFRFPGGGTMFPHGADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALE 160 (506)
T ss_pred cCCEEEeCCCCccccCCHHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhh
Confidence 9999999999999999999999999999987 77889999999999999999999999999999999999999999999
Q ss_pred cCCCeEEEEeccccCCCCCCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeCCCCccccccCCCcchhhhHh
Q 009069 262 RGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKS 341 (544)
Q Consensus 262 rgv~~~~~v~d~~~LPfpd~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~pp~~w~~~~~~w~~t~e~L~~ 341 (544)
||+++.+.+...++|||++++||+|||++|+++|..+.+.+|.|++|+|||||+|++++||.+ .++.+++.+
T Consensus 161 RGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~--------~r~~~~~~~ 232 (506)
T PF03141_consen 161 RGVPAMIGVLGSQRLPFPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPVY--------QRTDEDLEE 232 (506)
T ss_pred cCcchhhhhhccccccCCccchhhhhcccccccchhcccceeehhhhhhccCceEEecCCccc--------ccchHHHHH
Confidence 999999998889999999999999999999999999889999999999999999999999988 366788899
Q ss_pred hhhhHHHHHHhhcceeeeeeccEEEEeccCCCcccccccccCCCCCCCC-CCCCCchhhhhhhccccCCCCCcchhhhcC
Q 009069 342 EQNGIETIARSLCWKKLIQKKDLAIWQKPTNHVHCIANRRVFKKPRFCK-AQDPDMAWYTKMETCLTPLPEVSNIKEIAG 420 (544)
Q Consensus 342 ~~~~ie~la~~l~w~~v~~~~~~aIwqKP~~~~~c~~~~~~~~~p~~C~-~~~~d~~wy~~l~~Ci~~~p~~~~~~~~~~ 420 (544)
+|+.|++++++|||+++.++++++|||||.+| +||.+|+..+.|++|+ ++|+|++||++|++|||++|++++ ++++
T Consensus 233 ~~~~~~~l~~~lCW~~va~~~~~aIwqKp~~~-~Cy~~r~~~~~pplC~~~~dpd~aWY~~l~~Cit~~p~~~~--~~~~ 309 (506)
T PF03141_consen 233 EWNAMEDLAKSLCWKKVAEKGDTAIWQKPTNN-SCYQKRKPGKSPPLCDSSDDPDAAWYVPLEACITPLPEVSS--EIAG 309 (506)
T ss_pred HHHHHHHHHHHHHHHHheeeCCEEEEeccCCc-hhhhhccCCCCCCCCCCCCCCcchhhcchhhhcCcCCcccc--cccc
Confidence 99999999999999999999999999999998 9999999889999999 899999999999999999998754 7889
Q ss_pred CcccCCchhhcCCCcccccCcccCcchHhhHHhhHHHHHHHHHHHhhhh-cCCCCCCcchhhhccccccchhhhccCCCc
Q 009069 421 GQLTKWPERLNAIPPRVNRGAVDGVTAEMFREDTALWKKRVTYYKSVDY-QLAQPGRYRNLLDMNAYLGGFAAALVDDPL 499 (544)
Q Consensus 421 ~~~~~~p~r~~~~p~~~~~~~~~~~~~~~~~~d~~~w~~~v~~y~~~~~-~~~~~~~~rnvmdm~a~~ggfaaal~~~~~ 499 (544)
+++++||+||+++|+||+++++.|+++|+|++|+++||++|++||++++ .+++ ++|||||||||+||||||||+++||
T Consensus 310 ~~~~~WP~RL~~~P~rl~~~~~~g~~~e~F~~Dt~~Wk~~V~~Y~~l~~~~i~~-~~iRNVMDMnAg~GGFAAAL~~~~V 388 (506)
T PF03141_consen 310 GWLPKWPERLNAVPPRLSSGSIPGISPEEFKEDTKHWKKRVSHYKKLLGLAIKW-GRIRNVMDMNAGYGGFAAALIDDPV 388 (506)
T ss_pred cCCCCChhhhccCchhhhcCCcCCCCHHHHHHHHHHHHHHHHHHHHhhcccccc-cceeeeeeecccccHHHHHhccCCc
Confidence 9999999999999999999999999999999999999999999999988 5777 9999999999999999999999999
Q ss_pred eeeEecCCCCCCCccccccccccccccccccCCCCC-CCcccccCC
Q 009069 500 WVMNTVPVEAKINTLGVIYERGLIGTYQNWYVFISP-LRSYSLIST 544 (544)
Q Consensus 500 wvmnvvp~~~~~~tl~~i~~rglig~~hdwce~f~t-prtydl~ha 544 (544)
|||||||+.++ |||||||||||||+||||||+||| |||||||||
T Consensus 389 WVMNVVP~~~~-ntL~vIydRGLIG~yhDWCE~fsTYPRTYDLlHA 433 (506)
T PF03141_consen 389 WVMNVVPVSGP-NTLPVIYDRGLIGVYHDWCEAFSTYPRTYDLLHA 433 (506)
T ss_pred eEEEecccCCC-CcchhhhhcccchhccchhhccCCCCcchhheeh
Confidence 99999999886 999999999999999999999999 999999998
No 2
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.63 E-value=1.4e-15 Score=151.55 Aligned_cols=112 Identities=21% Similarity=0.262 Sum_probs=89.9
Q ss_pred HHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCC
Q 009069 206 DDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSR 281 (544)
Q Consensus 206 ~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~ 281 (544)
+.+.+.+...+ +.+|||||||||.++..+++. .++++|+++.|+..+..+........+.++++|++.|||+|+
T Consensus 41 ~~~i~~~~~~~--g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~ 118 (238)
T COG2226 41 RALISLLGIKP--GDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDN 118 (238)
T ss_pred HHHHHhhCCCC--CCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCC
Confidence 44555555443 449999999999999999886 588888888777655544332222238899999999999999
Q ss_pred CeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEe
Q 009069 282 AFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 282 sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
+||+|.+++.+.++. +...+|+|+.|||||||.+++..
T Consensus 119 sFD~vt~~fglrnv~-d~~~aL~E~~RVlKpgG~~~vle 156 (238)
T COG2226 119 SFDAVTISFGLRNVT-DIDKALKEMYRVLKPGGRLLVLE 156 (238)
T ss_pred ccCEEEeeehhhcCC-CHHHHHHHHHHhhcCCeEEEEEE
Confidence 999999999996666 58999999999999999998875
No 3
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.61 E-value=1.7e-15 Score=151.12 Aligned_cols=111 Identities=26% Similarity=0.388 Sum_probs=79.9
Q ss_pred HHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCC
Q 009069 207 DIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSR 281 (544)
Q Consensus 207 ~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-----~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~ 281 (544)
.+.+.+....+. +|||+|||||.++..++++ .++++|+++.|+..+..+.......++.+.++|++.+|++++
T Consensus 38 ~~~~~~~~~~g~--~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~ 115 (233)
T PF01209_consen 38 KLIKLLGLRPGD--RVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDN 115 (233)
T ss_dssp HHHHHHT--S----EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT
T ss_pred HHHhccCCCCCC--EEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCC
Confidence 344555444444 8999999999999999875 478889988888766655554333478999999999999999
Q ss_pred CeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEe
Q 009069 282 AFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 282 sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
+||+|.|++.++.++ +...+|+|+.|+|||||.|++.+
T Consensus 116 sfD~v~~~fglrn~~-d~~~~l~E~~RVLkPGG~l~ile 153 (233)
T PF01209_consen 116 SFDAVTCSFGLRNFP-DRERALREMYRVLKPGGRLVILE 153 (233)
T ss_dssp -EEEEEEES-GGG-S-SHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ceeEEEHHhhHHhhC-CHHHHHHHHHHHcCCCeEEEEee
Confidence 999999999997666 48899999999999999999975
No 4
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.58 E-value=4e-15 Score=124.57 Aligned_cols=92 Identities=27% Similarity=0.431 Sum_probs=72.4
Q ss_pred EEeCCCCcHHHHHHhhC-CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEeccccCCCCCCCeeEEEecccccccccCh
Q 009069 223 IDTGCGVASWGAYLMSR-NILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYD 299 (544)
Q Consensus 223 LDIGCGtG~~a~~La~~-~V~~vdisp~dls~a~v~~A~ergv--~~~~~v~d~~~LPfpd~sFDlV~~~~~l~h~~~d~ 299 (544)
||+|||+|.++..|+++ +..++.+ |+++.+++.++++.. ...+...+...+|+++++||+|++..+++|+ ++.
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~---D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~-~~~ 76 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGI---DISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL-EDP 76 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEE---ES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGS-SHH
T ss_pred CEecCcCCHHHHHHHhccCCEEEEE---eCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeec-cCH
Confidence 89999999999999988 5444444 445556666665542 3558889999999999999999999999777 557
Q ss_pred HHHHHHHHHcccCCcEEEE
Q 009069 300 GLYLIEVDRVLRPGGYWIL 318 (544)
Q Consensus 300 ~~~L~Ei~RVLKPGG~Lvi 318 (544)
..+++|+.|+|||||+++|
T Consensus 77 ~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 77 EAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHHcCcCeEEeC
Confidence 9999999999999999986
No 5
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.52 E-value=5.4e-14 Score=142.69 Aligned_cols=123 Identities=15% Similarity=0.242 Sum_probs=92.3
Q ss_pred CCCcccHHHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCCeEEEEe
Q 009069 195 TMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERGVPALIGVM 271 (544)
Q Consensus 195 ~~F~~ga~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---~V~~vdisp~dls~a~v~~A~ergv~~~~~v~ 271 (544)
.++..|.....+.+.+.+.+.++. +|||||||+|..+..|++. .++++|+++.++..+..... ....+.+..+
T Consensus 31 ~~~~~gg~~~~~~~l~~l~l~~~~--~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~--~~~~i~~~~~ 106 (263)
T PTZ00098 31 DYISSGGIEATTKILSDIELNENS--KVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNS--DKNKIEFEAN 106 (263)
T ss_pred CCCCCCchHHHHHHHHhCCCCCCC--EEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcC--cCCceEEEEC
Confidence 344455555566777777666554 8999999999999888764 46777776655543332211 1235778888
Q ss_pred ccccCCCCCCCeeEEEeccccccccc-ChHHHHHHHHHcccCCcEEEEEeC
Q 009069 272 ASIRLPYPSRAFDMAHCSRCLIPWGQ-YDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 272 d~~~LPfpd~sFDlV~~~~~l~h~~~-d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
|....|+++++||+|++..+++|+.. +...+|+++.|+|||||+|+++..
T Consensus 107 D~~~~~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~ 157 (263)
T PTZ00098 107 DILKKDFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDY 157 (263)
T ss_pred CcccCCCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 88888999999999999988888763 568999999999999999999865
No 6
>PLN02244 tocopherol O-methyltransferase
Probab=99.51 E-value=2.5e-13 Score=142.70 Aligned_cols=119 Identities=19% Similarity=0.362 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHhccc---CCCCCEEEEeCCCCcHHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEec
Q 009069 201 ADAYIDDIGKLINLK---DGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERGV--PALIGVMA 272 (544)
Q Consensus 201 a~~~i~~L~~lL~l~---~g~~r~VLDIGCGtG~~a~~La~~---~V~~vdisp~dls~a~v~~A~ergv--~~~~~v~d 272 (544)
....++++.+.+.+. ...+.+|||||||+|.++..|+++ .++++|+++.++..+.. .+.+.+. ++.+.++|
T Consensus 98 q~~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~-~~~~~g~~~~v~~~~~D 176 (340)
T PLN02244 98 QIRMIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANA-LAAAQGLSDKVSFQVAD 176 (340)
T ss_pred HHHHHHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHH-HHHhcCCCCceEEEEcC
Confidence 344555555555441 123458999999999999999875 57788887766654433 3334443 57888999
Q ss_pred cccCCCCCCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 273 SIRLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 273 ~~~LPfpd~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
...+|+++++||+|++..+++|+.+ ...++.++.|+|||||.|++...
T Consensus 177 ~~~~~~~~~~FD~V~s~~~~~h~~d-~~~~l~e~~rvLkpGG~lvi~~~ 224 (340)
T PLN02244 177 ALNQPFEDGQFDLVWSMESGEHMPD-KRKFVQELARVAAPGGRIIIVTW 224 (340)
T ss_pred cccCCCCCCCccEEEECCchhccCC-HHHHHHHHHHHcCCCcEEEEEEe
Confidence 9999999999999999999988874 78999999999999999999863
No 7
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.51 E-value=1.5e-13 Score=139.25 Aligned_cols=110 Identities=17% Similarity=0.113 Sum_probs=86.1
Q ss_pred HHHhcccCCCCCEEEEeCCCCcHHHHHHhhC-----CcEEEeCCccchHHHHHHHHH--Hc-CCCeEEEEeccccCCCCC
Q 009069 209 GKLINLKDGSIRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFAL--ER-GVPALIGVMASIRLPYPS 280 (544)
Q Consensus 209 ~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-----~V~~vdisp~dls~a~v~~A~--er-gv~~~~~v~d~~~LPfpd 280 (544)
.+.+.... +.+|||+|||+|.++..|+++ .++++|+++.|+..+..+... .. ..++.+.++|...+|+++
T Consensus 66 ~~~~~~~~--~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~ 143 (261)
T PLN02233 66 VSWSGAKM--GDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDD 143 (261)
T ss_pred HHHhCCCC--CCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCC
Confidence 34444444 348999999999999888764 478888888777655433211 11 235788899999999999
Q ss_pred CCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 281 RAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 281 ~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
++||+|+++.+++++. ++..++.|+.|+|||||+|++.+.
T Consensus 144 ~sfD~V~~~~~l~~~~-d~~~~l~ei~rvLkpGG~l~i~d~ 183 (261)
T PLN02233 144 CYFDAITMGYGLRNVV-DRLKAMQEMYRVLKPGSRVSILDF 183 (261)
T ss_pred CCEeEEEEecccccCC-CHHHHHHHHHHHcCcCcEEEEEEC
Confidence 9999999999997765 589999999999999999999864
No 8
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.47 E-value=4.3e-13 Score=139.88 Aligned_cols=150 Identities=13% Similarity=0.080 Sum_probs=103.3
Q ss_pred CCCEEEEeCCCCcHHHHHHhhCC--cEEEeCCccchHHHHHHHHHHcC--CCeEEEEeccccCCCCCCCeeEEEeccccc
Q 009069 218 SIRTAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQFALERG--VPALIGVMASIRLPYPSRAFDMAHCSRCLI 293 (544)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~~--V~~vdisp~dls~a~v~~A~erg--v~~~~~v~d~~~LPfpd~sFDlV~~~~~l~ 293 (544)
.+.+|||||||+|.++..|++.+ |+++|+++.++..++.. +...+ ..+.+..++++.+++++++||+|+|..+++
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~-~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLe 209 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLH-ADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIE 209 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHH-HHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHHH
Confidence 34589999999999999998874 67777766665544432 22222 257788888889998889999999999998
Q ss_pred ccccChHHHHHHHHHcccCCcEEEEEeCCCCcccc---------ccCCCcch-hhh--HhhhhhHHHHHHhhcceeeeee
Q 009069 294 PWGQYDGLYLIEVDRVLRPGGYWILSGPPVNWESH---------WKGWNRTT-EDL--KSEQNGIETIARSLCWKKLIQK 361 (544)
Q Consensus 294 h~~~d~~~~L~Ei~RVLKPGG~Lvis~pp~~w~~~---------~~~w~~t~-e~L--~~~~~~ie~la~~l~w~~v~~~ 361 (544)
|+.+ +..++.++.|+|||||.|+++......... ...|.... +.. ....++++.+++..+++.+...
T Consensus 210 Hv~d-~~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~i~~~~ 288 (322)
T PLN02396 210 HVAN-PAEFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASVDVKEMA 288 (322)
T ss_pred hcCC-HHHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCeEEEEe
Confidence 8775 899999999999999999999754332100 00111110 000 1124567888888999887664
Q ss_pred ccEEEEeccCC
Q 009069 362 KDLAIWQKPTN 372 (544)
Q Consensus 362 ~~~aIwqKP~~ 372 (544)
+-. -+|..
T Consensus 289 G~~---~~p~~ 296 (322)
T PLN02396 289 GFV---YNPIT 296 (322)
T ss_pred eeE---EcCcC
Confidence 332 35654
No 9
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.47 E-value=9.3e-14 Score=137.27 Aligned_cols=153 Identities=22% Similarity=0.278 Sum_probs=108.1
Q ss_pred CCCCchh-hHHHhhcceeeecCCceecCCCCCCCcccHHHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhCC--c
Q 009069 165 NVPHKEL-TVEKKNQNWVRFQGDRFSFPGGGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN--I 241 (544)
Q Consensus 165 n~p~~~L-~~~k~~q~w~~~~ge~~~F~g~g~~F~~ga~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~--V 241 (544)
++++..+ ...+-.+.||+..++.-.. . .+-.....|+.+.... ...-.+.+|||||||.|.++..|++.| |
T Consensus 11 ~id~~e~~~F~~la~~wwd~~g~f~~L-H---~~N~~rl~~i~~~~~~--~~~l~g~~vLDvGCGgG~Lse~mAr~Ga~V 84 (243)
T COG2227 11 NVDYKELDKFEALASRWWDPEGEFKPL-H---KINPLRLDYIREVARL--RFDLPGLRVLDVGCGGGILSEPLARLGASV 84 (243)
T ss_pred cCCHHHHHHHHHHHhhhcCCCCceeee-e---eeccchhhhhhhhhhc--ccCCCCCeEEEecCCccHhhHHHHHCCCee
Confidence 4455444 3455577899876643322 1 1122233344332221 001235589999999999999999985 6
Q ss_pred EEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 242 LAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 242 ~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
+++|+++..+..++. .|.+.++.+.+....++++-...++||+|+|..+++|.++ ++.+++.+.+.+||||.++++..
T Consensus 85 tgiD~se~~I~~Ak~-ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv~d-p~~~~~~c~~lvkP~G~lf~STi 162 (243)
T COG2227 85 TGIDASEKPIEVAKL-HALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEHVPD-PESFLRACAKLVKPGGILFLSTI 162 (243)
T ss_pred EEecCChHHHHHHHH-hhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHccCC-HHHHHHHHHHHcCCCcEEEEecc
Confidence 777777766655443 4567787877888888888777789999999999999886 89999999999999999999987
Q ss_pred CCCc
Q 009069 322 PVNW 325 (544)
Q Consensus 322 p~~w 325 (544)
..++
T Consensus 163 nrt~ 166 (243)
T COG2227 163 NRTL 166 (243)
T ss_pred ccCH
Confidence 5543
No 10
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.47 E-value=3.3e-13 Score=135.22 Aligned_cols=108 Identities=22% Similarity=0.371 Sum_probs=84.7
Q ss_pred HHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhCC--cEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCe
Q 009069 206 DDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAF 283 (544)
Q Consensus 206 ~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~--V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~sF 283 (544)
+.+.+.++.. ...+|||+|||+|.++..|++.+ ++++|+++ .+++.+.++.....+..+|.+.+|+++++|
T Consensus 32 ~~l~~~l~~~--~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~-----~~l~~a~~~~~~~~~~~~d~~~~~~~~~~f 104 (251)
T PRK10258 32 DALLAMLPQR--KFTHVLDAGCGPGWMSRYWRERGSQVTALDLSP-----PMLAQARQKDAADHYLAGDIESLPLATATF 104 (251)
T ss_pred HHHHHhcCcc--CCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCH-----HHHHHHHhhCCCCCEEEcCcccCcCCCCcE
Confidence 4455555432 34589999999999999998764 56666654 555566555444567788999999999999
Q ss_pred eEEEecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 284 DMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 284 DlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
|+|+++.++ ||..++..+|.++.|+|||||.|+++.+
T Consensus 105 D~V~s~~~l-~~~~d~~~~l~~~~~~Lk~gG~l~~~~~ 141 (251)
T PRK10258 105 DLAWSNLAV-QWCGNLSTALRELYRVVRPGGVVAFTTL 141 (251)
T ss_pred EEEEECchh-hhcCCHHHHHHHHHHHcCCCeEEEEEeC
Confidence 999999988 6777789999999999999999999975
No 11
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.45 E-value=6.6e-13 Score=129.02 Aligned_cols=108 Identities=16% Similarity=0.263 Sum_probs=79.8
Q ss_pred HHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEeccccCCCCCCCee
Q 009069 208 IGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRLPYPSRAFD 284 (544)
Q Consensus 208 L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~A~ergv-~~~~~v~d~~~LPfpd~sFD 284 (544)
+.+.+....+ .+|||+|||+|.++..|+++ .|+++|+++.++..++.. +...++ .+.+.+.|...++++ ++||
T Consensus 22 l~~~l~~~~~--~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~-~~~~~~~~v~~~~~d~~~~~~~-~~fD 97 (197)
T PRK11207 22 VLEAVKVVKP--GKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERI-KAAENLDNLHTAVVDLNNLTFD-GEYD 97 (197)
T ss_pred HHHhcccCCC--CcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-HHHcCCCcceEEecChhhCCcC-CCcC
Confidence 3344443333 47999999999999999987 477888888776555543 334444 366777787777764 6799
Q ss_pred EEEecccccccccC-hHHHHHHHHHcccCCcEEEEE
Q 009069 285 MAHCSRCLIPWGQY-DGLYLIEVDRVLRPGGYWILS 319 (544)
Q Consensus 285 lV~~~~~l~h~~~d-~~~~L~Ei~RVLKPGG~Lvis 319 (544)
+|+|+.++|++..+ ...++.++.|+|||||++++.
T Consensus 98 ~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~ 133 (197)
T PRK11207 98 FILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIV 133 (197)
T ss_pred EEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 99999998665542 379999999999999997654
No 12
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.43 E-value=5.7e-13 Score=122.65 Aligned_cols=145 Identities=21% Similarity=0.398 Sum_probs=95.0
Q ss_pred HHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhCC--cEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCC
Q 009069 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSR 281 (544)
Q Consensus 204 ~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~--V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~ 281 (544)
+.+.+.++.+. .....+|||||||+|.++..|++.+ ++++|+++.++. . ........+....+.+++
T Consensus 9 ~~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~~~~-----~-----~~~~~~~~~~~~~~~~~~ 77 (161)
T PF13489_consen 9 YADLLERLLPR-LKPGKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQMIE-----K-----RNVVFDNFDAQDPPFPDG 77 (161)
T ss_dssp HHHHHHHHHTC-TTTTSEEEEESSTTSHHHHHHHHTTSEEEEEESSHHHHH-----H-----TTSEEEEEECHTHHCHSS
T ss_pred HHHHHHHHhcc-cCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHh-----h-----hhhhhhhhhhhhhhcccc
Confidence 33444445432 2334489999999999999998884 566666554443 2 223333334445556789
Q ss_pred CeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeCCCCc--cccccCCC--cc--hhhhHhhhhhHHHHHHhhcc
Q 009069 282 AFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPPVNW--ESHWKGWN--RT--TEDLKSEQNGIETIARSLCW 355 (544)
Q Consensus 282 sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~pp~~w--~~~~~~w~--~t--~e~L~~~~~~ie~la~~l~w 355 (544)
+||+|+|+.+++|+.+ +..+|.++.++|||||+++++.+.... ......|. .. ........+.++.++++.+|
T Consensus 78 ~fD~i~~~~~l~~~~d-~~~~l~~l~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G~ 156 (161)
T PF13489_consen 78 SFDLIICNDVLEHLPD-PEEFLKELSRLLKPGGYLVISDPNRDDPSPRSFLKWRYDRPYGGHVHFFSPDELRQLLEQAGF 156 (161)
T ss_dssp SEEEEEEESSGGGSSH-HHHHHHHHHHCEEEEEEEEEEEEBTTSHHHHHHHHCCGTCHHTTTTEEBBHHHHHHHHHHTTE
T ss_pred chhhHhhHHHHhhccc-HHHHHHHHHHhcCCCCEEEEEEcCCcchhhhHHHhcCCcCccCceeccCCHHHHHHHHHHCCC
Confidence 9999999999988874 899999999999999999999874321 11111111 11 11112234678889999999
Q ss_pred eeeee
Q 009069 356 KKLIQ 360 (544)
Q Consensus 356 ~~v~~ 360 (544)
+.+.+
T Consensus 157 ~iv~~ 161 (161)
T PF13489_consen 157 EIVEE 161 (161)
T ss_dssp EEEE-
T ss_pred EEEEC
Confidence 87653
No 13
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.41 E-value=2.5e-12 Score=124.80 Aligned_cols=108 Identities=14% Similarity=0.225 Sum_probs=80.1
Q ss_pred HHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeE
Q 009069 208 IGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDM 285 (544)
Q Consensus 208 L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~sFDl 285 (544)
+.+.+....+ .+|||+|||+|.++.+|+++ .|+++|+++.++..+.. .+...++++.+.+.|....+++ ++||+
T Consensus 22 l~~~~~~~~~--~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~-~~~~~~~~v~~~~~d~~~~~~~-~~fD~ 97 (195)
T TIGR00477 22 VREAVKTVAP--CKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLD-MKARENLPLRTDAYDINAAALN-EDYDF 97 (195)
T ss_pred HHHHhccCCC--CcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHH-HHHHhCCCceeEeccchhcccc-CCCCE
Confidence 3444443333 37999999999999999987 47888888776654443 3445566666666776666654 57999
Q ss_pred EEecccccccccCh-HHHHHHHHHcccCCcEEEEE
Q 009069 286 AHCSRCLIPWGQYD-GLYLIEVDRVLRPGGYWILS 319 (544)
Q Consensus 286 V~~~~~l~h~~~d~-~~~L~Ei~RVLKPGG~Lvis 319 (544)
|+++.+++++..+. ..+++++.|+|||||++++.
T Consensus 98 I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~ 132 (195)
T TIGR00477 98 IFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIV 132 (195)
T ss_pred EEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 99999997775433 78999999999999996665
No 14
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.39 E-value=1.8e-12 Score=130.50 Aligned_cols=105 Identities=24% Similarity=0.268 Sum_probs=79.9
Q ss_pred HHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCC
Q 009069 206 DDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSR 281 (544)
Q Consensus 206 ~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~ 281 (544)
..+.+.+....+ .+|||||||+|.++..|+++ .++++|+++ .+++.+++++ +.+..+|...++ +++
T Consensus 19 ~~ll~~l~~~~~--~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~-----~~~~~a~~~~--~~~~~~d~~~~~-~~~ 88 (255)
T PRK14103 19 YDLLARVGAERA--RRVVDLGCGPGNLTRYLARRWPGAVIEALDSSP-----EMVAAARERG--VDARTGDVRDWK-PKP 88 (255)
T ss_pred HHHHHhCCCCCC--CEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCH-----HHHHHHHhcC--CcEEEcChhhCC-CCC
Confidence 445555544433 48999999999999999876 466677755 4445555554 566777887774 568
Q ss_pred CeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 282 AFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 282 sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
+||+|+|+.++||+ .++..+++++.++|||||+|++..+
T Consensus 89 ~fD~v~~~~~l~~~-~d~~~~l~~~~~~LkpgG~l~~~~~ 127 (255)
T PRK14103 89 DTDVVVSNAALQWV-PEHADLLVRWVDELAPGSWIAVQVP 127 (255)
T ss_pred CceEEEEehhhhhC-CCHHHHHHHHHHhCCCCcEEEEEcC
Confidence 99999999999655 4589999999999999999999854
No 15
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.38 E-value=4.1e-12 Score=125.36 Aligned_cols=113 Identities=21% Similarity=0.291 Sum_probs=86.3
Q ss_pred HHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCC
Q 009069 206 DDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPS 280 (544)
Q Consensus 206 ~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-----~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd 280 (544)
+.+.+.+....+ .+|||+|||+|.++..+++. .++++|+++.++..++...+......+.+..+|...+++++
T Consensus 35 ~~~l~~l~~~~~--~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~ 112 (231)
T TIGR02752 35 KDTMKRMNVQAG--TSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDD 112 (231)
T ss_pred HHHHHhcCCCCC--CEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCC
Confidence 455566655544 48999999999999988764 47888887766655444433222225778888888888888
Q ss_pred CCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 281 RAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 281 ~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
++||+|++..+++++. +...++.++.|+|||||++++..+
T Consensus 113 ~~fD~V~~~~~l~~~~-~~~~~l~~~~~~Lk~gG~l~~~~~ 152 (231)
T TIGR02752 113 NSFDYVTIGFGLRNVP-DYMQVLREMYRVVKPGGKVVCLET 152 (231)
T ss_pred CCccEEEEecccccCC-CHHHHHHHHHHHcCcCeEEEEEEC
Confidence 9999999999885554 578999999999999999998754
No 16
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.38 E-value=9.5e-13 Score=134.42 Aligned_cols=123 Identities=23% Similarity=0.409 Sum_probs=84.0
Q ss_pred cCCCCCCCcccHHHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC-CcEEEeCCccchHHHHHHHHH----HcCC
Q 009069 190 FPGGGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-NILAVSFAPRDTHEAQVQFAL----ERGV 264 (544)
Q Consensus 190 F~g~g~~F~~ga~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-~V~~vdisp~dls~a~v~~A~----ergv 264 (544)
|+.+...+.+.....++.+.+.+.+++|. +|||||||.|.++.+++++ ++.++++ .+++.|.+.+. +.|+
T Consensus 36 ~~~~~~~Le~AQ~~k~~~~~~~~~l~~G~--~vLDiGcGwG~~~~~~a~~~g~~v~gi---tlS~~Q~~~a~~~~~~~gl 110 (273)
T PF02353_consen 36 FDEGDDTLEEAQERKLDLLCEKLGLKPGD--RVLDIGCGWGGLAIYAAERYGCHVTGI---TLSEEQAEYARERIREAGL 110 (273)
T ss_dssp -SSTT--HHHHHHHHHHHHHTTTT--TT---EEEEES-TTSHHHHHHHHHH--EEEEE---ES-HHHHHHHHHHHHCSTS
T ss_pred cCCchhhHHHHHHHHHHHHHHHhCCCCCC--EEEEeCCCccHHHHHHHHHcCcEEEEE---ECCHHHHHHHHHHHHhcCC
Confidence 33344445555566667777777777766 9999999999999999998 7766666 45666666554 4454
Q ss_pred --CeEEEEeccccCCCCCCCeeEEEecccccccccCh-HHHHHHHHHcccCCcEEEEEe
Q 009069 265 --PALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYD-GLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 265 --~~~~~v~d~~~LPfpd~sFDlV~~~~~l~h~~~d~-~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
.+.+...|...++. +||.|++..+++|..... ..+++++.++|||||.+++..
T Consensus 111 ~~~v~v~~~D~~~~~~---~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~ 166 (273)
T PF02353_consen 111 EDRVEVRLQDYRDLPG---KFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQT 166 (273)
T ss_dssp SSTEEEEES-GGG------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEE
T ss_pred CCceEEEEeeccccCC---CCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEe
Confidence 36777777766654 899999999999997533 799999999999999999863
No 17
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.37 E-value=7e-12 Score=137.06 Aligned_cols=112 Identities=18% Similarity=0.336 Sum_probs=85.3
Q ss_pred HHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCC
Q 009069 206 DDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRA 282 (544)
Q Consensus 206 ~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~s 282 (544)
+.+.+.+.+. .+.+|||||||+|.++..|++. .++++|+++.++..+..+ +......+.+..+|...+++++++
T Consensus 256 e~l~~~~~~~--~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~-~~~~~~~v~~~~~d~~~~~~~~~~ 332 (475)
T PLN02336 256 KEFVDKLDLK--PGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALER-AIGRKCSVEFEVADCTKKTYPDNS 332 (475)
T ss_pred HHHHHhcCCC--CCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHH-hhcCCCceEEEEcCcccCCCCCCC
Confidence 3444554443 3458999999999999888875 477778776555433322 222233578888898888998899
Q ss_pred eeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 283 FDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 283 FDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
||+|+|..+++|+.+ +..++.++.|+|||||.|++...
T Consensus 333 fD~I~s~~~l~h~~d-~~~~l~~~~r~LkpgG~l~i~~~ 370 (475)
T PLN02336 333 FDVIYSRDTILHIQD-KPALFRSFFKWLKPGGKVLISDY 370 (475)
T ss_pred EEEEEECCcccccCC-HHHHHHHHHHHcCCCeEEEEEEe
Confidence 999999999988764 78999999999999999999865
No 18
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.36 E-value=1.1e-11 Score=129.37 Aligned_cols=111 Identities=19% Similarity=0.171 Sum_probs=82.7
Q ss_pred HHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhCC---cEEEeCCccchHHHHHHHHH-HcCCCeEEEEeccccCCCCCC
Q 009069 206 DDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN---ILAVSFAPRDTHEAQVQFAL-ERGVPALIGVMASIRLPYPSR 281 (544)
Q Consensus 206 ~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~---V~~vdisp~dls~a~v~~A~-ergv~~~~~v~d~~~LPfpd~ 281 (544)
+.+...+... .+++|||||||+|.++..+++.+ |+++|+++.++......... ....++.+..++.+.+|+ ++
T Consensus 112 ~~l~~~l~~l--~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~ 188 (322)
T PRK15068 112 DRVLPHLSPL--KGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LK 188 (322)
T ss_pred HHHHHhhCCC--CCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cC
Confidence 4444455322 34589999999999999998863 77777776655432211111 113357888888999998 78
Q ss_pred CeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEe
Q 009069 282 AFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 282 sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
+||+|+|..+++|.. ++..+|+++.++|||||.|+++.
T Consensus 189 ~FD~V~s~~vl~H~~-dp~~~L~~l~~~LkpGG~lvl~~ 226 (322)
T PRK15068 189 AFDTVFSMGVLYHRR-SPLDHLKQLKDQLVPGGELVLET 226 (322)
T ss_pred CcCEEEECChhhccC-CHHHHHHHHHHhcCCCcEEEEEE
Confidence 999999999998765 58899999999999999999974
No 19
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.36 E-value=4.3e-12 Score=127.80 Aligned_cols=113 Identities=19% Similarity=0.123 Sum_probs=84.0
Q ss_pred HHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhCC--cEEEeCCccchHHHHHHHHHHcCC--CeEEEEeccccCC-CCCC
Q 009069 207 DIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIRLP-YPSR 281 (544)
Q Consensus 207 ~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~--V~~vdisp~dls~a~v~~A~ergv--~~~~~v~d~~~LP-fpd~ 281 (544)
.+.+++..-.....+|||+|||+|.++..|++++ ++++|+++.++..++.. +.+.+. .+.+..++...++ ++++
T Consensus 33 ~~~~~l~~l~~~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~~-~~~~g~~~~v~~~~~d~~~l~~~~~~ 111 (255)
T PRK11036 33 DLDRLLAELPPRPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQA-AEAKGVSDNMQFIHCAAQDIAQHLET 111 (255)
T ss_pred HHHHHHHhcCCCCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHHH-HHhcCCccceEEEEcCHHHHhhhcCC
Confidence 3444444222334589999999999999999874 77788877776555433 333443 4677777877664 6678
Q ss_pred CeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 282 AFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 282 sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
+||+|+|..+++|+. ++..++.++.|+|||||+|++...
T Consensus 112 ~fD~V~~~~vl~~~~-~~~~~l~~~~~~LkpgG~l~i~~~ 150 (255)
T PRK11036 112 PVDLILFHAVLEWVA-DPKSVLQTLWSVLRPGGALSLMFY 150 (255)
T ss_pred CCCEEEehhHHHhhC-CHHHHHHHHHHHcCCCeEEEEEEE
Confidence 999999999996654 588999999999999999998753
No 20
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.35 E-value=1.3e-11 Score=129.48 Aligned_cols=136 Identities=20% Similarity=0.194 Sum_probs=95.2
Q ss_pred CCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEecccccc
Q 009069 219 IRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIP 294 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~sFDlV~~~~~l~h 294 (544)
..+|||||||+|.++..+++. .++++|+++.++..+..+.. ...+.+..+|...+++++++||+|+++.++++
T Consensus 114 ~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~---~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~ 190 (340)
T PLN02490 114 NLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECKIIEGDAEDLPFPTDYADRYVSAGSIEY 190 (340)
T ss_pred CCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh---ccCCeEEeccHHhCCCCCCceeEEEEcChhhh
Confidence 348999999999988888763 57888887766654443221 12456788899999999999999999999977
Q ss_pred cccChHHHHHHHHHcccCCcEEEEEeC--CCCccccccCCCcchhhhHhhhhhHHHHHHhhcceeeeee
Q 009069 295 WGQYDGLYLIEVDRVLRPGGYWILSGP--PVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQK 361 (544)
Q Consensus 295 ~~~d~~~~L~Ei~RVLKPGG~Lvis~p--p~~w~~~~~~w~~t~e~L~~~~~~ie~la~~l~w~~v~~~ 361 (544)
+.+ +..+|+++.|+|||||.+++.++ +..|...... .........+++.+++++.+|+.+..+
T Consensus 191 ~~d-~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~---~~~~~~~t~eEl~~lL~~aGF~~V~i~ 255 (340)
T PLN02490 191 WPD-PQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFA---DVWMLFPKEEEYIEWFTKAGFKDVKLK 255 (340)
T ss_pred CCC-HHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhh---hhhccCCCHHHHHHHHHHCCCeEEEEE
Confidence 764 78899999999999999998764 2222211100 000001123556778888899877643
No 21
>PRK08317 hypothetical protein; Provisional
Probab=99.35 E-value=2.7e-11 Score=118.40 Aligned_cols=116 Identities=24% Similarity=0.346 Sum_probs=88.3
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccC
Q 009069 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRL 276 (544)
Q Consensus 202 ~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-----~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~L 276 (544)
..+.+.+.+.+....+. +|||+|||+|.++..+++. .++++|+++..+..+... .......+.+...|...+
T Consensus 5 ~~~~~~~~~~~~~~~~~--~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~-~~~~~~~~~~~~~d~~~~ 81 (241)
T PRK08317 5 RRYRARTFELLAVQPGD--RVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKER-AAGLGPNVEFVRGDADGL 81 (241)
T ss_pred HHHHHHHHHHcCCCCCC--EEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHH-hhCCCCceEEEecccccC
Confidence 34555666666655544 8999999999999988764 477788866555433322 112234577888888888
Q ss_pred CCCCCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 277 PYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 277 Pfpd~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
++++++||+|++..+++|+.+ +..+++++.++|||||++++..+
T Consensus 82 ~~~~~~~D~v~~~~~~~~~~~-~~~~l~~~~~~L~~gG~l~~~~~ 125 (241)
T PRK08317 82 PFPDGSFDAVRSDRVLQHLED-PARALAEIARVLRPGGRVVVLDT 125 (241)
T ss_pred CCCCCCceEEEEechhhccCC-HHHHHHHHHHHhcCCcEEEEEec
Confidence 888899999999999977764 88999999999999999999875
No 22
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.34 E-value=6.1e-12 Score=125.34 Aligned_cols=102 Identities=15% Similarity=0.087 Sum_probs=78.8
Q ss_pred CCCEEEEeCCCCcHHHHHHhhC------CcEEEeCCccchHHHHHHHHHHc-CCCeEEEEeccccCCCCCCCeeEEEecc
Q 009069 218 SIRTAIDTGCGVASWGAYLMSR------NILAVSFAPRDTHEAQVQFALER-GVPALIGVMASIRLPYPSRAFDMAHCSR 290 (544)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~------~V~~vdisp~dls~a~v~~A~er-gv~~~~~v~d~~~LPfpd~sFDlV~~~~ 290 (544)
...+|||+|||+|.++..++++ .++++|+++.++..++.+..... ..++.+..+|...++++ .+|+|+++.
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~d~v~~~~ 130 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK--NASMVILNF 130 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC--CCCEEeeec
Confidence 3448999999999999888763 47888888877765554333211 23578888898888865 489999999
Q ss_pred cccccccC-hHHHHHHHHHcccCCcEEEEEeC
Q 009069 291 CLIPWGQY-DGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 291 ~l~h~~~d-~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
++||+.+. ...+++++.|+|||||.|+++.+
T Consensus 131 ~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 131 TLQFLPPEDRIALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred chhhCCHHHHHHHHHHHHHhcCCCeEEEEeec
Confidence 99777642 37899999999999999999965
No 23
>PRK05785 hypothetical protein; Provisional
Probab=99.34 E-value=4.9e-12 Score=125.68 Aligned_cols=87 Identities=18% Similarity=0.165 Sum_probs=69.6
Q ss_pred CCEEEEeCCCCcHHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEeccccccc
Q 009069 219 IRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPW 295 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~---~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~sFDlV~~~~~l~h~ 295 (544)
+.+|||||||+|.++..|+++ .++++|+++.|+ +.|.++. .+.+++.+.+|+++++||+|+++.+++|+
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml-----~~a~~~~---~~~~~d~~~lp~~d~sfD~v~~~~~l~~~ 123 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENML-----KMNLVAD---DKVVGSFEALPFRDKSFDVVMSSFALHAS 123 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHH-----HHHHhcc---ceEEechhhCCCCCCCEEEEEecChhhcc
Confidence 348999999999999999886 466666655554 4444432 34678899999999999999999999665
Q ss_pred ccChHHHHHHHHHcccCCc
Q 009069 296 GQYDGLYLIEVDRVLRPGG 314 (544)
Q Consensus 296 ~~d~~~~L~Ei~RVLKPGG 314 (544)
. +++.+++|+.|+|||.+
T Consensus 124 ~-d~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 124 D-NIEKVIAEFTRVSRKQV 141 (226)
T ss_pred C-CHHHHHHHHHHHhcCce
Confidence 4 58999999999999953
No 24
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.34 E-value=5.2e-12 Score=110.03 Aligned_cols=100 Identities=21% Similarity=0.257 Sum_probs=76.0
Q ss_pred CEEEEeCCCCcHHHHHHhh--C--CcEEEeCCccchHHHHHHHHHH-cCCCeEEEEecc-ccCCCCCCCeeEEEecc-cc
Q 009069 220 RTAIDTGCGVASWGAYLMS--R--NILAVSFAPRDTHEAQVQFALE-RGVPALIGVMAS-IRLPYPSRAFDMAHCSR-CL 292 (544)
Q Consensus 220 r~VLDIGCGtG~~a~~La~--~--~V~~vdisp~dls~a~v~~A~e-rgv~~~~~v~d~-~~LPfpd~sFDlV~~~~-~l 292 (544)
.+|||||||+|.++.++++ . .++++|+++.++..++.+.... ...++.+...|. .... ..+.||+|++.. ++
T Consensus 3 ~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~D~v~~~~~~~ 81 (112)
T PF12847_consen 3 GRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPD-FLEPFDLVICSGFTL 81 (112)
T ss_dssp CEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTT-TSSCEEEEEECSGSG
T ss_pred CEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcc-cCCCCCEEEECCCcc
Confidence 4899999999999999998 3 5788888887776666554332 235788888888 3333 345699999998 55
Q ss_pred ccccc--ChHHHHHHHHHcccCCcEEEEEe
Q 009069 293 IPWGQ--YDGLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 293 ~h~~~--d~~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
+++.. +...+++++.+.|+|||+|++..
T Consensus 82 ~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 82 HFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp GGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 44442 34789999999999999999975
No 25
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.32 E-value=9.8e-12 Score=124.95 Aligned_cols=108 Identities=21% Similarity=0.295 Sum_probs=80.9
Q ss_pred HHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCC
Q 009069 205 IDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPS 280 (544)
Q Consensus 205 i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd 280 (544)
.+.+...+.... +.+|||||||+|.++..|+++ .++++|+++. +++.+.++...+.+..+|...+. ++
T Consensus 20 ~~~ll~~~~~~~--~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~-----~i~~a~~~~~~~~~~~~d~~~~~-~~ 91 (258)
T PRK01683 20 ARDLLARVPLEN--PRYVVDLGCGPGNSTELLVERWPAARITGIDSSPA-----MLAEARSRLPDCQFVEADIASWQ-PP 91 (258)
T ss_pred HHHHHhhCCCcC--CCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHH-----HHHHHHHhCCCCeEEECchhccC-CC
Confidence 334444444443 448999999999999999875 4777777554 44555555445777778876664 45
Q ss_pred CCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 281 RAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 281 ~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
++||+|+++.+++ |..+...+++++.++|||||.|++..+
T Consensus 92 ~~fD~v~~~~~l~-~~~d~~~~l~~~~~~LkpgG~~~~~~~ 131 (258)
T PRK01683 92 QALDLIFANASLQ-WLPDHLELFPRLVSLLAPGGVLAVQMP 131 (258)
T ss_pred CCccEEEEccChh-hCCCHHHHHHHHHHhcCCCcEEEEECC
Confidence 6999999999985 555678999999999999999999854
No 26
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.31 E-value=7.4e-12 Score=127.45 Aligned_cols=123 Identities=23% Similarity=0.342 Sum_probs=92.0
Q ss_pred cCCCCCCCcccHHHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC-CcEEEeCCccchHHHHHHHHH----HcCC
Q 009069 190 FPGGGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-NILAVSFAPRDTHEAQVQFAL----ERGV 264 (544)
Q Consensus 190 F~g~g~~F~~ga~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-~V~~vdisp~dls~a~v~~A~----ergv 264 (544)
|+.......+.....++.+.+.+.+++|. +|||||||.|.++.+++++ ++.++++ +++++|.+.+. ++|.
T Consensus 46 f~~~~~tL~eAQ~~k~~~~~~kl~L~~G~--~lLDiGCGWG~l~~~aA~~y~v~V~Gv---TlS~~Q~~~~~~r~~~~gl 120 (283)
T COG2230 46 FEDPDMTLEEAQRAKLDLILEKLGLKPGM--TLLDIGCGWGGLAIYAAEEYGVTVVGV---TLSEEQLAYAEKRIAARGL 120 (283)
T ss_pred eCCCCCChHHHHHHHHHHHHHhcCCCCCC--EEEEeCCChhHHHHHHHHHcCCEEEEe---eCCHHHHHHHHHHHHHcCC
Confidence 55555556666677778888888888877 9999999999999999987 5655555 33444444433 4455
Q ss_pred C--eEEEEeccccCCCCCCCeeEEEecccccccccCh-HHHHHHHHHcccCCcEEEEEe
Q 009069 265 P--ALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYD-GLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 265 ~--~~~~v~d~~~LPfpd~sFDlV~~~~~l~h~~~d~-~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
. +.+...|... ..+.||-|++..+++|+..+. ..+|..+.++|+|||.+++..
T Consensus 121 ~~~v~v~l~d~rd---~~e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~ 176 (283)
T COG2230 121 EDNVEVRLQDYRD---FEEPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHS 176 (283)
T ss_pred CcccEEEeccccc---cccccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEE
Confidence 4 5554444433 345599999999999998755 899999999999999999975
No 27
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.31 E-value=2.3e-11 Score=122.18 Aligned_cols=118 Identities=17% Similarity=0.143 Sum_probs=85.3
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC------CcEEEeCCccchHHHHHHHHHHcC-CCeEEEEeccc
Q 009069 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR------NILAVSFAPRDTHEAQVQFALERG-VPALIGVMASI 274 (544)
Q Consensus 202 ~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~------~V~~vdisp~dls~a~v~~A~erg-v~~~~~v~d~~ 274 (544)
+...+.+..++......+.+|||||||+|..+..|++. .++++|+++.++..++.+...... ..+.+..++..
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~ 119 (247)
T PRK15451 40 SNIISMIGMLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIR 119 (247)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChh
Confidence 33444444443322233458999999999998887751 588888888887766655443221 25778888888
Q ss_pred cCCCCCCCeeEEEecccccccccCh-HHHHHHHHHcccCCcEEEEEeC
Q 009069 275 RLPYPSRAFDMAHCSRCLIPWGQYD-GLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 275 ~LPfpd~sFDlV~~~~~l~h~~~d~-~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
.+|++ .+|+|+++.++|++.++. ..+++++.|+|||||.|++++.
T Consensus 120 ~~~~~--~~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~ 165 (247)
T PRK15451 120 DIAIE--NASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEK 165 (247)
T ss_pred hCCCC--CCCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 88765 489999999997776433 6899999999999999999863
No 28
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.31 E-value=3.3e-11 Score=125.38 Aligned_cols=138 Identities=12% Similarity=0.091 Sum_probs=89.7
Q ss_pred CCEEEEeCCCCcHHHHHHhhCC---cEEEeCCccchHHHHHHHHHH---cCCCeEEEEeccccCCCCCCCeeEEEecccc
Q 009069 219 IRTAIDTGCGVASWGAYLMSRN---ILAVSFAPRDTHEAQVQFALE---RGVPALIGVMASIRLPYPSRAFDMAHCSRCL 292 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~---V~~vdisp~dls~a~v~~A~e---rgv~~~~~v~d~~~LPfpd~sFDlV~~~~~l 292 (544)
+++|||||||+|.++..++..+ ++++|.++.++... +.++. ....+.+..++...+|.. .+||+|+|+.++
T Consensus 122 g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~--~~~~~~~~~~~~v~~~~~~ie~lp~~-~~FD~V~s~gvL 198 (314)
T TIGR00452 122 GRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQF--EAVRKLLDNDKRAILEPLGIEQLHEL-YAFDTVFSMGVL 198 (314)
T ss_pred CCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHH--HHHHHHhccCCCeEEEECCHHHCCCC-CCcCEEEEcchh
Confidence 4589999999999998888764 56677766555332 11211 123466677778888764 489999999999
Q ss_pred cccccChHHHHHHHHHcccCCcEEEEEeCCCCcccc-----ccCCCcchh-hhHhhhhhHHHHHHhhcceeeee
Q 009069 293 IPWGQYDGLYLIEVDRVLRPGGYWILSGPPVNWESH-----WKGWNRTTE-DLKSEQNGIETIARSLCWKKLIQ 360 (544)
Q Consensus 293 ~h~~~d~~~~L~Ei~RVLKPGG~Lvis~pp~~w~~~-----~~~w~~t~e-~L~~~~~~ie~la~~l~w~~v~~ 360 (544)
+|+. ++..+|+++.|+|||||.|++.......... ...+.+... ........++...++.||+.+..
T Consensus 199 ~H~~-dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~flpS~~~L~~~L~~aGF~~V~i 271 (314)
T TIGR00452 199 YHRK-SPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNVYFIPSVSALKNWLEKVGFENFRI 271 (314)
T ss_pred hccC-CHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhccccccCCCHHHHHHHHHHCCCeEEEE
Confidence 8875 5889999999999999999997431111000 000000000 00012345677888889987753
No 29
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.30 E-value=2e-11 Score=125.33 Aligned_cols=98 Identities=18% Similarity=0.287 Sum_probs=76.9
Q ss_pred EEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEecccccccccC
Q 009069 221 TAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQY 298 (544)
Q Consensus 221 ~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~sFDlV~~~~~l~h~~~d 298 (544)
+|||+|||+|.++.+|+++ .|+++|+++.++..++ +.+.+.++++.+...|....++ +++||+|+++.++++...+
T Consensus 123 ~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~-~~~~~~~l~v~~~~~D~~~~~~-~~~fD~I~~~~vl~~l~~~ 200 (287)
T PRK12335 123 KALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQ-EIAEKENLNIRTGLYDINSASI-QEEYDFILSTVVLMFLNRE 200 (287)
T ss_pred CEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHH-HHHHHcCCceEEEEechhcccc-cCCccEEEEcchhhhCCHH
Confidence 7999999999999999987 4777888776665433 3455566677777777766555 6789999999999776532
Q ss_pred -hHHHHHHHHHcccCCcEEEEEe
Q 009069 299 -DGLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 299 -~~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
...+++++.|+|+|||++++..
T Consensus 201 ~~~~~l~~~~~~LkpgG~~l~v~ 223 (287)
T PRK12335 201 RIPAIIKNMQEHTNPGGYNLIVC 223 (287)
T ss_pred HHHHHHHHHHHhcCCCcEEEEEE
Confidence 3789999999999999977754
No 30
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.30 E-value=1.7e-11 Score=120.12 Aligned_cols=97 Identities=23% Similarity=0.271 Sum_probs=77.2
Q ss_pred CCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcC-CCeEEEEeccccCCCCCCCeeEEEeccccc
Q 009069 219 IRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERG-VPALIGVMASIRLPYPSRAFDMAHCSRCLI 293 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~erg-v~~~~~v~d~~~LPfpd~sFDlV~~~~~l~ 293 (544)
..+|||+|||+|.++..|++. .++++|+++.++ +.+.++. .++.+..+|...+++++++||+|++..+++
T Consensus 35 ~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~-----~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~ 109 (240)
T TIGR02072 35 PASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGML-----AQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQ 109 (240)
T ss_pred CCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHH-----HHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhh
Confidence 458999999999999999876 357777755443 3443332 246778888888998999999999999995
Q ss_pred ccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 294 PWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 294 h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
|. .++..++.++.++|||||.|++..+
T Consensus 110 ~~-~~~~~~l~~~~~~L~~~G~l~~~~~ 136 (240)
T TIGR02072 110 WC-DDLSQALSELARVLKPGGLLAFSTF 136 (240)
T ss_pred hc-cCHHHHHHHHHHHcCCCcEEEEEeC
Confidence 54 4588999999999999999999865
No 31
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.30 E-value=1.1e-11 Score=122.98 Aligned_cols=105 Identities=17% Similarity=0.147 Sum_probs=86.7
Q ss_pred cCCCCCEEEEeCCCCcHHHHHHhhC----------CcEEEeCCccchHHHHHHHHHHcCC----CeEEEEeccccCCCCC
Q 009069 215 KDGSIRTAIDTGCGVASWGAYLMSR----------NILAVSFAPRDTHEAQVQFALERGV----PALIGVMASIRLPYPS 280 (544)
Q Consensus 215 ~~g~~r~VLDIGCGtG~~a~~La~~----------~V~~vdisp~dls~a~v~~A~ergv----~~~~~v~d~~~LPfpd 280 (544)
.++.+.++||++||||-++..+.+. .|++.|+++.++..+.. .+.+++. ...+..+|++.|||++
T Consensus 97 ~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkq-Ra~~~~l~~~~~~~w~~~dAE~LpFdd 175 (296)
T KOG1540|consen 97 GPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQ-RAKKRPLKASSRVEWVEGDAEDLPFDD 175 (296)
T ss_pred CCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHH-HHhhcCCCcCCceEEEeCCcccCCCCC
Confidence 4444569999999999988888763 58999999988876654 3444543 2678888999999999
Q ss_pred CCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 281 RAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 281 ~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
++||+....+.+..+++ +...|+|++|||||||.|.+-..
T Consensus 176 ~s~D~yTiafGIRN~th-~~k~l~EAYRVLKpGGrf~cLeF 215 (296)
T KOG1540|consen 176 DSFDAYTIAFGIRNVTH-IQKALREAYRVLKPGGRFSCLEF 215 (296)
T ss_pred CcceeEEEecceecCCC-HHHHHHHHHHhcCCCcEEEEEEc
Confidence 99999999999877775 89999999999999999998754
No 32
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.29 E-value=1.3e-11 Score=114.42 Aligned_cols=100 Identities=25% Similarity=0.308 Sum_probs=79.9
Q ss_pred CCEEEEeCCCCcHHHHHHhh-C----CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEeccccCC--CCCCCeeEEEecc
Q 009069 219 IRTAIDTGCGVASWGAYLMS-R----NILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRLP--YPSRAFDMAHCSR 290 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~-~----~V~~vdisp~dls~a~v~~A~ergv-~~~~~v~d~~~LP--fpd~sFDlV~~~~ 290 (544)
..+|||+|||+|.++..|++ . .++++|+++.++..+.. .+.+.+. .+.+.+.|...++ ++ +.||+|++..
T Consensus 4 ~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~-~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~~ 81 (152)
T PF13847_consen 4 NKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKK-RAKELGLDNIEFIQGDIEDLPQELE-EKFDIIISNG 81 (152)
T ss_dssp TSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHH-HHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEES
T ss_pred CCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhc-ccccccccccceEEeehhccccccC-CCeeEEEEcC
Confidence 34899999999999999993 2 47888888777755554 3334455 5899999988877 66 8999999999
Q ss_pred cccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 291 CLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 291 ~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
+++++. ++..+++++.++|++||.+++..+
T Consensus 82 ~l~~~~-~~~~~l~~~~~~lk~~G~~i~~~~ 111 (152)
T PF13847_consen 82 VLHHFP-DPEKVLKNIIRLLKPGGILIISDP 111 (152)
T ss_dssp TGGGTS-HHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred chhhcc-CHHHHHHHHHHHcCCCcEEEEEEC
Confidence 995555 478999999999999999999865
No 33
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=99.28 E-value=2.7e-11 Score=130.44 Aligned_cols=127 Identities=24% Similarity=0.413 Sum_probs=100.1
Q ss_pred ccCCCCCEEEEeCCCCcHHHHHHhhCCcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEeccccc
Q 009069 214 LKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLI 293 (544)
Q Consensus 214 l~~g~~r~VLDIGCGtG~~a~~La~~~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~sFDlV~~~~~l~ 293 (544)
+..+..|+|+|+.+|.|+|+++|.+..|.+|.+.|. .....+....+||+--.+.. =-+.++..+++||+||+...|.
T Consensus 361 i~~~~iRNVMDMnAg~GGFAAAL~~~~VWVMNVVP~-~~~ntL~vIydRGLIG~yhD-WCE~fsTYPRTYDLlHA~~lfs 438 (506)
T PF03141_consen 361 IKWGRIRNVMDMNAGYGGFAAALIDDPVWVMNVVPV-SGPNTLPVIYDRGLIGVYHD-WCEAFSTYPRTYDLLHADGLFS 438 (506)
T ss_pred ccccceeeeeeecccccHHHHHhccCCceEEEeccc-CCCCcchhhhhcccchhccc-hhhccCCCCcchhheehhhhhh
Confidence 567788999999999999999999999999999886 44566677788884322221 1345666689999999999887
Q ss_pred ccccCh--HHHHHHHHHcccCCcEEEEEeCCCCccccccCCCcchhhhHhhhhhHHHHHHhhcceeeee
Q 009069 294 PWGQYD--GLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQ 360 (544)
Q Consensus 294 h~~~d~--~~~L~Ei~RVLKPGG~Lvis~pp~~w~~~~~~w~~t~e~L~~~~~~ie~la~~l~w~~v~~ 360 (544)
.+...- +.+|.|++|+|||||+++|.+. .+...+++.+++++.|+....
T Consensus 439 ~~~~rC~~~~illEmDRILRP~G~~iiRD~------------------~~vl~~v~~i~~~lrW~~~~~ 489 (506)
T PF03141_consen 439 LYKDRCEMEDILLEMDRILRPGGWVIIRDT------------------VDVLEKVKKIAKSLRWEVRIH 489 (506)
T ss_pred hhcccccHHHHHHHhHhhcCCCceEEEecc------------------HHHHHHHHHHHHhCcceEEEE
Confidence 766433 7899999999999999999843 223456889999999987653
No 34
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.26 E-value=5.1e-12 Score=109.14 Aligned_cols=92 Identities=28% Similarity=0.492 Sum_probs=69.6
Q ss_pred EEEeCCCCcHHHHHHhhC-------CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEeccc-cc
Q 009069 222 AIDTGCGVASWGAYLMSR-------NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRC-LI 293 (544)
Q Consensus 222 VLDIGCGtG~~a~~La~~-------~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~sFDlV~~~~~-l~ 293 (544)
|||+|||+|..+..+.+. .++++|+++.++..+..+.. +.+.++.+.++|...+++.+++||+|+|+.. ++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~-~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~ 79 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFS-EDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLH 79 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSH-HTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhch-hcCCceEEEECCHhHCcccCCCeeEEEEcCCccC
Confidence 799999999999988764 46677776666544443322 3457899999999999988999999999655 77
Q ss_pred ccccCh-HHHHHHHHHcccCCc
Q 009069 294 PWGQYD-GLYLIEVDRVLRPGG 314 (544)
Q Consensus 294 h~~~d~-~~~L~Ei~RVLKPGG 314 (544)
|+.++. ..+++++.++|||||
T Consensus 80 ~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 80 HLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GSSHHHHHHHHHHHHHTEEEEE
T ss_pred CCCHHHHHHHHHHHHHHhCCCC
Confidence 766544 789999999999998
No 35
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.25 E-value=4.2e-11 Score=115.34 Aligned_cols=143 Identities=24% Similarity=0.328 Sum_probs=105.4
Q ss_pred HHHHHhcccCCCCCEEEEeCCCCcHHHHHHhh-CCcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeE
Q 009069 207 DIGKLINLKDGSIRTAIDTGCGVASWGAYLMS-RNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDM 285 (544)
Q Consensus 207 ~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~-~~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~sFDl 285 (544)
.|.+++ .+++ +|||+|||.|.+..+|.+ +++.+.++ +++++.+..+.++|+++.-..++..-..|++++||.
T Consensus 6 ~I~~~I--~pgs--rVLDLGCGdG~LL~~L~~~k~v~g~Gv---Eid~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~ 78 (193)
T PF07021_consen 6 IIAEWI--EPGS--RVLDLGCGDGELLAYLKDEKQVDGYGV---EIDPDNVAACVARGVSVIQGDLDEGLADFPDQSFDY 78 (193)
T ss_pred HHHHHc--CCCC--EEEecCCCchHHHHHHHHhcCCeEEEE---ecCHHHHHHHHHcCCCEEECCHHHhHhhCCCCCccE
Confidence 455554 3444 899999999999999987 57877777 667777888889998765443333323499999999
Q ss_pred EEecccccccccChHHHHHHHHHcccCCcEEEEEeCCC-Cccc---------------cccCCCcchhhhHhhhhhHHHH
Q 009069 286 AHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPPV-NWES---------------HWKGWNRTTEDLKSEQNGIETI 349 (544)
Q Consensus 286 V~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~pp~-~w~~---------------~~~~w~~t~e~L~~~~~~ie~l 349 (544)
|+++.++.+... ++.+|.|+.|+ |...+++-|.. .|+. -...|++|+..-.-..+..+++
T Consensus 79 VIlsqtLQ~~~~-P~~vL~EmlRV---gr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~l 154 (193)
T PF07021_consen 79 VILSQTLQAVRR-PDEVLEEMLRV---GRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDL 154 (193)
T ss_pred EehHhHHHhHhH-HHHHHHHHHHh---cCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHH
Confidence 999999977664 89999999777 66777775533 3321 2345888877666667788889
Q ss_pred HHhhcceeeee
Q 009069 350 ARSLCWKKLIQ 360 (544)
Q Consensus 350 a~~l~w~~v~~ 360 (544)
.+..+++.+..
T Consensus 155 c~~~~i~I~~~ 165 (193)
T PF07021_consen 155 CRELGIRIEER 165 (193)
T ss_pred HHHCCCEEEEE
Confidence 99988876653
No 36
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.25 E-value=3.8e-11 Score=121.79 Aligned_cols=101 Identities=20% Similarity=0.202 Sum_probs=78.6
Q ss_pred CCEEEEeCCCCcHHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEeccccCCCCCCCeeEEEecccc
Q 009069 219 IRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRLPYPSRAFDMAHCSRCL 292 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~-----~V~~vdisp~dls~a~v~~A~ergv-~~~~~v~d~~~LPfpd~sFDlV~~~~~l 292 (544)
+.+|||||||+|..+..+++. .++++|+++.++..+..... ..+. .+.+..++...+++++++||+|+++.++
T Consensus 78 g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~-~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~v~ 156 (272)
T PRK11873 78 GETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANAR-KAGYTNVEFRLGEIEALPVADNSVDVIISNCVI 156 (272)
T ss_pred CCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHH-HcCCCCEEEEEcchhhCCCCCCceeEEEEcCcc
Confidence 349999999999877665543 37888887776655543332 3333 5778888899999999999999999888
Q ss_pred cccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 293 IPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 293 ~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
+++. +...++.++.|+|||||.|++++.
T Consensus 157 ~~~~-d~~~~l~~~~r~LkpGG~l~i~~~ 184 (272)
T PRK11873 157 NLSP-DKERVFKEAFRVLKPGGRFAISDV 184 (272)
T ss_pred cCCC-CHHHHHHHHHHHcCCCcEEEEEEe
Confidence 5554 578899999999999999999864
No 37
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.25 E-value=2.3e-12 Score=110.55 Aligned_cols=93 Identities=23% Similarity=0.277 Sum_probs=57.4
Q ss_pred EEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCC--CCCCCeeEEEecccccccc
Q 009069 223 IDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLP--YPSRAFDMAHCSRCLIPWG 296 (544)
Q Consensus 223 LDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LP--fpd~sFDlV~~~~~l~h~~ 296 (544)
||||||+|.++..++++ .++++|+++.++..++.++................... ...++||+|+++.++||+
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l- 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL- 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS---
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhh-
Confidence 79999999999888775 68899999998865555554433333333333332222 123599999999999888
Q ss_pred cChHHHHHHHHHcccCCcEE
Q 009069 297 QYDGLYLIEVDRVLRPGGYW 316 (544)
Q Consensus 297 ~d~~~~L~Ei~RVLKPGG~L 316 (544)
++...+++.+.++|||||.|
T Consensus 80 ~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp S-HHHHHHHHTTT-TSS-EE
T ss_pred hhHHHHHHHHHHHcCCCCCC
Confidence 66799999999999999986
No 38
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.25 E-value=2.1e-10 Score=110.96 Aligned_cols=116 Identities=16% Similarity=0.093 Sum_probs=87.3
Q ss_pred CCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEeccccCCCCCCCeeEEEeccccc
Q 009069 219 IRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRLPYPSRAFDMAHCSRCLI 293 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv-~~~~~v~d~~~LPfpd~sFDlV~~~~~l~ 293 (544)
+.+|||+|||+|.++..++.+ .++++|+++.++..++.. +.+.+. ++.+..++...++. +++||+|++...
T Consensus 46 g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~-~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~~-- 121 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREV-AAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSRAV-- 121 (187)
T ss_pred CCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHH-HHHcCCCCEEEEeccHhhCCC-CCCccEEEEccc--
Confidence 458999999999988888753 588888887777555543 334444 47888888888776 779999998642
Q ss_pred ccccChHHHHHHHHHcccCCcEEEEEeCCCCccccccCCCcchhhhHhhhhhHHHHHHhhcceeee
Q 009069 294 PWGQYDGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLI 359 (544)
Q Consensus 294 h~~~d~~~~L~Ei~RVLKPGG~Lvis~pp~~w~~~~~~w~~t~e~L~~~~~~ie~la~~l~w~~v~ 359 (544)
.+...++.++.++|||||.|++...+.. ...++++++..+|....
T Consensus 122 ---~~~~~~l~~~~~~LkpGG~lv~~~~~~~------------------~~~l~~~~~~~~~~~~~ 166 (187)
T PRK00107 122 ---ASLSDLVELCLPLLKPGGRFLALKGRDP------------------EEEIAELPKALGGKVEE 166 (187)
T ss_pred ---cCHHHHHHHHHHhcCCCeEEEEEeCCCh------------------HHHHHHHHHhcCceEee
Confidence 2357899999999999999999865311 23477788888997554
No 39
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.25 E-value=3.5e-11 Score=116.96 Aligned_cols=208 Identities=19% Similarity=0.259 Sum_probs=139.2
Q ss_pred HHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCee
Q 009069 207 DIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFD 284 (544)
Q Consensus 207 ~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~sFD 284 (544)
+|...+++.. .++|.|+|||+|..+..|+++ +..+.+| |.+.+|++.|.++.+++.|..+|....- ++..+|
T Consensus 21 dLla~Vp~~~--~~~v~DLGCGpGnsTelL~~RwP~A~i~Gi---DsS~~Mla~Aa~rlp~~~f~~aDl~~w~-p~~~~d 94 (257)
T COG4106 21 DLLARVPLER--PRRVVDLGCGPGNSTELLARRWPDAVITGI---DSSPAMLAKAAQRLPDATFEEADLRTWK-PEQPTD 94 (257)
T ss_pred HHHhhCCccc--cceeeecCCCCCHHHHHHHHhCCCCeEeec---cCCHHHHHHHHHhCCCCceecccHhhcC-CCCccc
Confidence 3444444443 448999999999999999998 4444555 5566777788889999999999987765 667899
Q ss_pred EEEecccccccccChHHHHHHHHHcccCCcEEEEEeCCCCccccccCCCcchhhhHhhhhhHHHHHHhhcceeeeeeccE
Q 009069 285 MAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQKKDL 364 (544)
Q Consensus 285 lV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~pp~~w~~~~~~w~~t~e~L~~~~~~ie~la~~l~w~~v~~~~~~ 364 (544)
+++++.+| ||.++-..+|..+...|.|||.|.+..|. |+.. .....|++.++..-|........+
T Consensus 95 llfaNAvl-qWlpdH~~ll~rL~~~L~Pgg~LAVQmPd-N~de-------------psH~~mr~~A~~~p~~~~l~~~~~ 159 (257)
T COG4106 95 LLFANAVL-QWLPDHPELLPRLVSQLAPGGVLAVQMPD-NLDE-------------PSHRLMRETADEAPFAQELGGRGL 159 (257)
T ss_pred hhhhhhhh-hhccccHHHHHHHHHhhCCCceEEEECCC-ccCc-------------hhHHHHHHHHhcCchhhhhCcccc
Confidence 99999988 88887899999999999999999999872 2111 123457778887777666544333
Q ss_pred EEEeccCCCcccccccccCCCCCCCCCCCCCchhhhhhhccccCCCCCcc-hhhhcCCcccCCchhhcCCCcccccCccc
Q 009069 365 AIWQKPTNHVHCIANRRVFKKPRFCKAQDPDMAWYTKMETCLTPLPEVSN-IKEIAGGQLTKWPERLNAIPPRVNRGAVD 443 (544)
Q Consensus 365 aIwqKP~~~~~c~~~~~~~~~p~~C~~~~~d~~wy~~l~~Ci~~~p~~~~-~~~~~~~~~~~~p~r~~~~p~~~~~~~~~ 443 (544)
-++|+-.-+-|-.. -.+.-|+-+-=...+|.+ +|.... .+|+.|..+.+|=+||
T Consensus 160 --~r~~v~s~a~Yy~l---La~~~~rvDiW~T~Y~h~-------l~~a~aIvdWvkgTgLrP~L~~L------------- 214 (257)
T COG4106 160 --TRAPLPSPAAYYEL---LAPLACRVDIWHTTYYHQ-------LPGADAIVDWVKGTGLRPYLDRL------------- 214 (257)
T ss_pred --ccCCCCCHHHHHHH---hCcccceeeeeeeecccc-------CCCccchhhheeccccceecccc-------------
Confidence 36666433333222 112234422223334444 343333 4678887777776666
Q ss_pred CcchHhhHHhhHHHHHHHHHHHhhhh
Q 009069 444 GVTAEMFREDTALWKKRVTYYKSVDY 469 (544)
Q Consensus 444 ~~~~~~~~~d~~~w~~~v~~y~~~~~ 469 (544)
|.+.|+.-+..|...+.
T Consensus 215 ---------~e~~~~~FL~~Y~~~l~ 231 (257)
T COG4106 215 ---------DEEERQRFLDRYLALLA 231 (257)
T ss_pred ---------CHHHHHHHHHHHHHHHH
Confidence 33456666677776554
No 40
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.24 E-value=4e-11 Score=122.03 Aligned_cols=91 Identities=23% Similarity=0.393 Sum_probs=72.2
Q ss_pred CCEEEEeCCCCcHHHHHHhhC-------CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEeccc
Q 009069 219 IRTAIDTGCGVASWGAYLMSR-------NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRC 291 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~-------~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~sFDlV~~~~~ 291 (544)
..+|||+|||+|.++..|++. .++++|+ ++.+++.|.++..++.+.++|...+|+++++||+|++..+
T Consensus 86 ~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~-----s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~ 160 (272)
T PRK11088 86 ATALLDIGCGEGYYTHALADALPEITTMQLFGLDI-----SKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYA 160 (272)
T ss_pred CCeEEEECCcCCHHHHHHHHhcccccCCeEEEECC-----CHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecC
Confidence 347999999999999988764 2455555 4555666666666788889999999999999999998653
Q ss_pred ccccccChHHHHHHHHHcccCCcEEEEEeCC
Q 009069 292 LIPWGQYDGLYLIEVDRVLRPGGYWILSGPP 322 (544)
Q Consensus 292 l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~pp 322 (544)
- ..+.|+.|+|||||+|++..+.
T Consensus 161 ~--------~~~~e~~rvLkpgG~li~~~p~ 183 (272)
T PRK11088 161 P--------CKAEELARVVKPGGIVITVTPG 183 (272)
T ss_pred C--------CCHHHHHhhccCCCEEEEEeCC
Confidence 1 2468999999999999999764
No 41
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.21 E-value=9.2e-11 Score=113.73 Aligned_cols=109 Identities=20% Similarity=0.330 Sum_probs=82.0
Q ss_pred HHHHhcccCCCCCEEEEeCCCCcHHHHHHhhCC--cEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeE
Q 009069 208 IGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDM 285 (544)
Q Consensus 208 L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~--V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~sFDl 285 (544)
+.+.++... ..++||+|||.|..+.+|+++| |+++|+++..+.. ..+.|.+.++++...+.|.....++ +.||+
T Consensus 22 v~~a~~~~~--~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~-l~~~a~~~~l~i~~~~~Dl~~~~~~-~~yD~ 97 (192)
T PF03848_consen 22 VLEAVPLLK--PGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEK-LQRLAEEEGLDIRTRVADLNDFDFP-EEYDF 97 (192)
T ss_dssp HHHHCTTS---SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHH-HHHHHHHTT-TEEEEE-BGCCBS-T-TTEEE
T ss_pred HHHHHhhcC--CCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHH-HHHHHhhcCceeEEEEecchhcccc-CCcCE
Confidence 444444333 3379999999999999999996 6778887766644 3467778889999898898777765 68999
Q ss_pred EEecccccccccCh-HHHHHHHHHcccCCcEEEEEe
Q 009069 286 AHCSRCLIPWGQYD-GLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 286 V~~~~~l~h~~~d~-~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
|++..+++++..+. ..++..+...++|||++++..
T Consensus 98 I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~ 133 (192)
T PF03848_consen 98 IVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVT 133 (192)
T ss_dssp EEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEE
Confidence 99988887776644 678999999999999999964
No 42
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.19 E-value=5.9e-11 Score=114.67 Aligned_cols=100 Identities=21% Similarity=0.268 Sum_probs=80.6
Q ss_pred EEEEeCCCCcHHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCCeE-EEEeccccCC-CCCCCeeEEEeccccccc
Q 009069 221 TAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERGVPAL-IGVMASIRLP-YPSRAFDMAHCSRCLIPW 295 (544)
Q Consensus 221 ~VLDIGCGtG~~a~~La~~---~V~~vdisp~dls~a~v~~A~ergv~~~-~~v~d~~~LP-fpd~sFDlV~~~~~l~h~ 295 (544)
.||+||||||..-.++.-. .|+.+|-++.|.+-+...++..+...+. |++++.+.+| ++++++|+|+|..++ .-
T Consensus 79 ~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvL-CS 157 (252)
T KOG4300|consen 79 DVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLVL-CS 157 (252)
T ss_pred ceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEEE-ec
Confidence 4899999999877666532 5677777776665555555555555555 8899999999 899999999999999 56
Q ss_pred ccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 296 GQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 296 ~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
.+++.+.|.|+.|+|||||.+++..+
T Consensus 158 ve~~~k~L~e~~rlLRpgG~iifiEH 183 (252)
T KOG4300|consen 158 VEDPVKQLNEVRRLLRPGGRIIFIEH 183 (252)
T ss_pred cCCHHHHHHHHHHhcCCCcEEEEEec
Confidence 66789999999999999999999865
No 43
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.18 E-value=1.7e-10 Score=113.35 Aligned_cols=98 Identities=19% Similarity=0.291 Sum_probs=74.7
Q ss_pred EEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEeccccCCCCCCCeeEEEecccccc
Q 009069 221 TAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIRLPYPSRAFDMAHCSRCLIP 294 (544)
Q Consensus 221 ~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv--~~~~~v~d~~~LPfpd~sFDlV~~~~~l~h 294 (544)
+|||||||+|.++..+++. .++++|+++.++..+.... .+.+. .+.+...|....+++ ++||+|++..+++|
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~-~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l~~ 79 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERI-RALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFEVIHH 79 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH-HhcCCCcceEEEecccccCCCC-CCCCEeehHHHHHh
Confidence 6999999999999998875 3667777665554333322 23333 357777777666665 58999999999977
Q ss_pred cccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 295 WGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 295 ~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
+.+ ...+|.++.++|||||++++...
T Consensus 80 ~~~-~~~~l~~~~~~LkpgG~l~i~~~ 105 (224)
T smart00828 80 IKD-KMDLFSNISRHLKDGGHLVLADF 105 (224)
T ss_pred CCC-HHHHHHHHHHHcCCCCEEEEEEc
Confidence 754 78999999999999999999875
No 44
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.18 E-value=1.2e-10 Score=113.69 Aligned_cols=102 Identities=16% Similarity=0.184 Sum_probs=77.9
Q ss_pred CCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEecc-ccCC--CCCCCeeEEEeccc
Q 009069 219 IRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGVPALIGVMAS-IRLP--YPSRAFDMAHCSRC 291 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~-~~LP--fpd~sFDlV~~~~~ 291 (544)
..+|||+|||+|.++..|++. .++++|+++.++..+..+.......++.+.++|+ ..++ +++++||+|++++.
T Consensus 41 ~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~~ 120 (202)
T PRK00121 41 APIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNFP 120 (202)
T ss_pred CCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEECC
Confidence 458999999999999988764 5889999887776555444332223578888888 7766 77889999998765
Q ss_pred ccccccC--------hHHHHHHHHHcccCCcEEEEEeC
Q 009069 292 LIPWGQY--------DGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 292 l~h~~~d--------~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
. +|... ...+++++.++|||||.|++..+
T Consensus 121 ~-p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~ 157 (202)
T PRK00121 121 D-PWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATD 157 (202)
T ss_pred C-CCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcC
Confidence 4 44321 26799999999999999999865
No 45
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.17 E-value=2.1e-10 Score=112.44 Aligned_cols=94 Identities=18% Similarity=0.132 Sum_probs=72.2
Q ss_pred CCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEecccccc
Q 009069 219 IRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIP 294 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~sFDlV~~~~~l~h 294 (544)
..+|||||||+|.++..|++. .++++|+++ .+++.|+++...+.+.+++... |+++++||+|+++.+++|
T Consensus 44 ~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~-----~~l~~A~~~~~~~~~~~~d~~~-~~~~~sfD~V~~~~vL~h 117 (204)
T TIGR03587 44 IASILELGANIGMNLAALKRLLPFKHIYGVEINE-----YAVEKAKAYLPNINIIQGSLFD-PFKDNFFDLVLTKGVLIH 117 (204)
T ss_pred CCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCH-----HHHHHHHhhCCCCcEEEeeccC-CCCCCCEEEEEECChhhh
Confidence 347999999999999998775 356666654 4555555544456677777776 889999999999999998
Q ss_pred cccCh-HHHHHHHHHcccCCcEEEEEe
Q 009069 295 WGQYD-GLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 295 ~~~d~-~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
+.++. ..+++++.|++ ++++++..
T Consensus 118 l~p~~~~~~l~el~r~~--~~~v~i~e 142 (204)
T TIGR03587 118 INPDNLPTAYRELYRCS--NRYILIAE 142 (204)
T ss_pred CCHHHHHHHHHHHHhhc--CcEEEEEE
Confidence 86433 78999999998 56777765
No 46
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.17 E-value=2.2e-10 Score=113.07 Aligned_cols=102 Identities=18% Similarity=0.081 Sum_probs=75.8
Q ss_pred CCEEEEeCCCCcHHHHHHhhCC--cEEEeCCccchHHHHHHHHH------------HcCCCeEEEEeccccCCCC-CCCe
Q 009069 219 IRTAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQFAL------------ERGVPALIGVMASIRLPYP-SRAF 283 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~--V~~vdisp~dls~a~v~~A~------------ergv~~~~~v~d~~~LPfp-d~sF 283 (544)
+.+|||+|||.|..+.+|+++| |+++|+|+..+..++.+... .++..+.+.++|...++.. .+.|
T Consensus 35 ~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~f 114 (213)
T TIGR03840 35 GARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLGPV 114 (213)
T ss_pred CCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCCCc
Confidence 3489999999999999999985 67777776655432211100 0233577788888777643 4579
Q ss_pred eEEEecccccccccCh-HHHHHHHHHcccCCcEEEEEe
Q 009069 284 DMAHCSRCLIPWGQYD-GLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 284 DlV~~~~~l~h~~~d~-~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
|.|+...+++|++.+. ..++..+.++|||||++++.+
T Consensus 115 D~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~ 152 (213)
T TIGR03840 115 DAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLIT 152 (213)
T ss_pred CEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEE
Confidence 9999999998887655 679999999999999876663
No 47
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.16 E-value=4.8e-10 Score=115.35 Aligned_cols=123 Identities=17% Similarity=0.194 Sum_probs=82.3
Q ss_pred CCCCCCcccHHHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCC--e
Q 009069 192 GGGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERGVP--A 266 (544)
Q Consensus 192 g~g~~F~~ga~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---~V~~vdisp~dls~a~v~~A~ergv~--~ 266 (544)
..+..|+.|.........+.+......+.+|||+|||+|.++..+++. .++++|+++.++..++.+.. .+++. +
T Consensus 133 dpg~aFgtG~h~tt~l~l~~l~~~~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~-~n~~~~~~ 211 (288)
T TIGR00406 133 DPGLAFGTGTHPTTSLCLEWLEDLDLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAE-LNQVSDRL 211 (288)
T ss_pred CCCCcccCCCCHHHHHHHHHHHhhcCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHH-HcCCCcce
Confidence 344556666665555555554422223458999999999998888765 47889998877765554433 34443 2
Q ss_pred EEEEeccccCCCCCCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 267 LIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 267 ~~~v~d~~~LPfpd~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
.+...+ ..+..+++||+|+++....+ ...++.++.++|||||+|++++.
T Consensus 212 ~~~~~~--~~~~~~~~fDlVvan~~~~~----l~~ll~~~~~~LkpgG~li~sgi 260 (288)
T TIGR00406 212 QVKLIY--LEQPIEGKADVIVANILAEV----IKELYPQFSRLVKPGGWLILSGI 260 (288)
T ss_pred EEEecc--cccccCCCceEEEEecCHHH----HHHHHHHHHHHcCCCcEEEEEeC
Confidence 233222 23445678999999764421 25789999999999999999975
No 48
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.15 E-value=2.9e-10 Score=117.25 Aligned_cols=145 Identities=19% Similarity=0.218 Sum_probs=98.0
Q ss_pred CCCCCCCcccHHHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCCeE
Q 009069 191 PGGGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERGVPAL 267 (544)
Q Consensus 191 ~g~g~~F~~ga~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---~V~~vdisp~dls~a~v~~A~ergv~~~ 267 (544)
...|..|+.|.....+...+++......+.+|||+|||+|.++...++. .|.++|++|..+..+. +.+..+++...
T Consensus 134 idPg~AFGTG~H~TT~lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~-~N~~~N~~~~~ 212 (295)
T PF06325_consen 134 IDPGMAFGTGHHPTTRLCLELLEKYVKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAAR-ENAELNGVEDR 212 (295)
T ss_dssp ESTTSSS-SSHCHHHHHHHHHHHHHSSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHH-HHHHHTT-TTC
T ss_pred ECCCCcccCCCCHHHHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHH-HHHHHcCCCee
Confidence 3456778999888888877777644444569999999999888777765 4889999997775444 44556676555
Q ss_pred EEEeccccCCCCCCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeCCCCccccccCCCcchhhhHhhhhhHH
Q 009069 268 IGVMASIRLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIE 347 (544)
Q Consensus 268 ~~v~d~~~LPfpd~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~pp~~w~~~~~~w~~t~e~L~~~~~~ie 347 (544)
+.+.. ........||+|+++..... ...++..+.++|+|||+|++|+-- ....+.+.
T Consensus 213 ~~v~~--~~~~~~~~~dlvvANI~~~v----L~~l~~~~~~~l~~~G~lIlSGIl-----------------~~~~~~v~ 269 (295)
T PF06325_consen 213 IEVSL--SEDLVEGKFDLVVANILADV----LLELAPDIASLLKPGGYLILSGIL-----------------EEQEDEVI 269 (295)
T ss_dssp EEESC--TSCTCCS-EEEEEEES-HHH----HHHHHHHCHHHEEEEEEEEEEEEE-----------------GGGHHHHH
T ss_pred EEEEE--ecccccccCCEEEECCCHHH----HHHHHHHHHHhhCCCCEEEEcccc-----------------HHHHHHHH
Confidence 44332 22334589999999875421 257888899999999999999751 11233455
Q ss_pred HHHHhhcceeeee
Q 009069 348 TIARSLCWKKLIQ 360 (544)
Q Consensus 348 ~la~~l~w~~v~~ 360 (544)
+.+++ +|+.+..
T Consensus 270 ~a~~~-g~~~~~~ 281 (295)
T PF06325_consen 270 EAYKQ-GFELVEE 281 (295)
T ss_dssp HHHHT-TEEEEEE
T ss_pred HHHHC-CCEEEEE
Confidence 66666 8876653
No 49
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.14 E-value=2.3e-10 Score=112.52 Aligned_cols=109 Identities=17% Similarity=0.141 Sum_probs=76.4
Q ss_pred ccHHHHHHHHHHHhc-ccCCCCCEEEEeCCCCcHHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEec
Q 009069 199 RGADAYIDDIGKLIN-LKDGSIRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGVPALIGVMA 272 (544)
Q Consensus 199 ~ga~~~i~~L~~lL~-l~~g~~r~VLDIGCGtG~~a~~La~~-----~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d 272 (544)
...-..+.++.+.+. +.. +.+|||||||+|.++..++++ .|+++|+++. . ...++.+.++|
T Consensus 33 ~r~~~kl~~~~~~~~~~~~--~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~-~----------~~~~v~~i~~D 99 (209)
T PRK11188 33 SRAWFKLDEIQQSDKLFKP--GMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM-D----------PIVGVDFLQGD 99 (209)
T ss_pred hhHHHhhHHHHHHhccCCC--CCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc-c----------CCCCcEEEecC
Confidence 333334445555554 343 348999999999999988875 3788888661 1 11246777888
Q ss_pred cccCC--------CCCCCeeEEEecccccccccCh-----------HHHHHHHHHcccCCcEEEEEeC
Q 009069 273 SIRLP--------YPSRAFDMAHCSRCLIPWGQYD-----------GLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 273 ~~~LP--------fpd~sFDlV~~~~~l~h~~~d~-----------~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
....+ +.+++||+|+|..+. ++..++ ..+|.++.++|||||.|++...
T Consensus 100 ~~~~~~~~~i~~~~~~~~~D~V~S~~~~-~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~ 166 (209)
T PRK11188 100 FRDELVLKALLERVGDSKVQVVMSDMAP-NMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVF 166 (209)
T ss_pred CCChHHHHHHHHHhCCCCCCEEecCCCC-ccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 77643 667899999998766 333222 3589999999999999999753
No 50
>PRK06922 hypothetical protein; Provisional
Probab=99.14 E-value=1.7e-10 Score=128.76 Aligned_cols=102 Identities=18% Similarity=0.134 Sum_probs=80.4
Q ss_pred CCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCC--CCCCCeeEEEecccc
Q 009069 219 IRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLP--YPSRAFDMAHCSRCL 292 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LP--fpd~sFDlV~~~~~l 292 (544)
+.+|||+|||+|.++..+++. .++++|+++.++..++.+. ...+.+..+.++|...+| +++++||+|+++.++
T Consensus 419 g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl-~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vL 497 (677)
T PRK06922 419 GDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKK-QNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSIL 497 (677)
T ss_pred CCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHh-hhcCCCeEEEEcchHhCccccCCCCEEEEEEchHH
Confidence 348999999999998888764 6788888887776555432 233456677778888887 788999999999999
Q ss_pred cccc------------cChHHHHHHHHHcccCCcEEEEEeC
Q 009069 293 IPWG------------QYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 293 ~h~~------------~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
|++. .+...+|+++.|+|||||.+++...
T Consensus 498 H~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 498 HELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred HhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 7763 1337899999999999999999853
No 51
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.14 E-value=4.8e-10 Score=115.16 Aligned_cols=144 Identities=20% Similarity=0.268 Sum_probs=94.2
Q ss_pred CCCCcccHHHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCCeEEEE
Q 009069 194 GTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERGVPALIGV 270 (544)
Q Consensus 194 g~~F~~ga~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---~V~~vdisp~dls~a~v~~A~ergv~~~~~v 270 (544)
|.-|+.|.........+.+......+++|||+|||+|.++...++. .+.++|++|..+..++ +.++.++++.....
T Consensus 138 GlAFGTG~HpTT~lcL~~Le~~~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~-eNa~~N~v~~~~~~ 216 (300)
T COG2264 138 GLAFGTGTHPTTSLCLEALEKLLKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAAR-ENARLNGVELLVQA 216 (300)
T ss_pred ccccCCCCChhHHHHHHHHHHhhcCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHH-HHHHHcCCchhhhc
Confidence 4445666655555555555433335669999999999998888876 4789999887775444 45556676631111
Q ss_pred eccccCCCCC-CCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeCCCCccccccCCCcchhhhHhhhhhHHHH
Q 009069 271 MASIRLPYPS-RAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETI 349 (544)
Q Consensus 271 ~d~~~LPfpd-~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~pp~~w~~~~~~w~~t~e~L~~~~~~ie~l 349 (544)
.....+..+. +.||+|+++... +. ...+..++.+.|||||++++|+- +.+..+.+.+.
T Consensus 217 ~~~~~~~~~~~~~~DvIVANILA-~v---l~~La~~~~~~lkpgg~lIlSGI-----------------l~~q~~~V~~a 275 (300)
T COG2264 217 KGFLLLEVPENGPFDVIVANILA-EV---LVELAPDIKRLLKPGGRLILSGI-----------------LEDQAESVAEA 275 (300)
T ss_pred ccccchhhcccCcccEEEehhhH-HH---HHHHHHHHHHHcCCCceEEEEee-----------------hHhHHHHHHHH
Confidence 1122222333 589999998743 21 15899999999999999999974 11123345566
Q ss_pred HHhhcceeee
Q 009069 350 ARSLCWKKLI 359 (544)
Q Consensus 350 a~~l~w~~v~ 359 (544)
+++.+|+.+.
T Consensus 276 ~~~~gf~v~~ 285 (300)
T COG2264 276 YEQAGFEVVE 285 (300)
T ss_pred HHhCCCeEeE
Confidence 6667787665
No 52
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.13 E-value=2.8e-10 Score=121.60 Aligned_cols=110 Identities=27% Similarity=0.433 Sum_probs=79.3
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC-C--cEEEeCCccchHHHHHHHHHHc--CCCeEEEEeccccC
Q 009069 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-N--ILAVSFAPRDTHEAQVQFALER--GVPALIGVMASIRL 276 (544)
Q Consensus 202 ~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-~--V~~vdisp~dls~a~v~~A~er--gv~~~~~v~d~~~L 276 (544)
...++.+.+.+.+.++. +|||||||+|.++..++++ + |+++|+++ .+++.+.++ +..+.+...|...+
T Consensus 153 ~~k~~~l~~~l~l~~g~--rVLDIGcG~G~~a~~la~~~g~~V~giDlS~-----~~l~~A~~~~~~l~v~~~~~D~~~l 225 (383)
T PRK11705 153 EAKLDLICRKLQLKPGM--RVLDIGCGWGGLARYAAEHYGVSVVGVTISA-----EQQKLAQERCAGLPVEIRLQDYRDL 225 (383)
T ss_pred HHHHHHHHHHhCCCCCC--EEEEeCCCccHHHHHHHHHCCCEEEEEeCCH-----HHHHHHHHHhccCeEEEEECchhhc
Confidence 33445565666555544 8999999999999999875 4 55566655 444444443 34456666665544
Q ss_pred CCCCCCeeEEEecccccccccC-hHHHHHHHHHcccCCcEEEEEeC
Q 009069 277 PYPSRAFDMAHCSRCLIPWGQY-DGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 277 Pfpd~sFDlV~~~~~l~h~~~d-~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
+++||+|++..+++|.... ...++.++.|+|||||++++...
T Consensus 226 ---~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i 268 (383)
T PRK11705 226 ---NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTI 268 (383)
T ss_pred ---CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEc
Confidence 4789999999999887543 37899999999999999999753
No 53
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.13 E-value=6.6e-10 Score=97.91 Aligned_cols=109 Identities=17% Similarity=0.037 Sum_probs=75.6
Q ss_pred HHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEecccc-CCCCC
Q 009069 206 DDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIR-LPYPS 280 (544)
Q Consensus 206 ~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~-LPfpd 280 (544)
..+.+.+....+ .+|||+|||+|.++..++++ .++++|+++..+..+..........++.+...+... ++...
T Consensus 9 ~~~~~~~~~~~~--~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (124)
T TIGR02469 9 ALTLSKLRLRPG--DVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSL 86 (124)
T ss_pred HHHHHHcCCCCC--CEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhc
Confidence 344555544443 38999999999999999875 478888877666555543333222246666666543 33444
Q ss_pred CCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEe
Q 009069 281 RAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 281 ~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
++||.|++.....+ ...+++++.++|||||.|++..
T Consensus 87 ~~~D~v~~~~~~~~----~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 87 PEPDRVFIGGSGGL----LQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred CCCCEEEECCcchh----HHHHHHHHHHHcCCCCEEEEEe
Confidence 68999999765422 3589999999999999999874
No 54
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.13 E-value=2.3e-09 Score=105.24 Aligned_cols=114 Identities=18% Similarity=0.189 Sum_probs=83.1
Q ss_pred HHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHc-CCCeEEEEeccccCCC
Q 009069 205 IDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALER-GVPALIGVMASIRLPY 278 (544)
Q Consensus 205 i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-----~V~~vdisp~dls~a~v~~A~er-gv~~~~~v~d~~~LPf 278 (544)
...+...+...+ ..+|||+|||+|.++..+++. .++++|+++..+..++..+.... ..++.+...|...+++
T Consensus 40 ~~~~~~~~~~~~--~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~ 117 (239)
T PRK00216 40 RRKTIKWLGVRP--GDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPF 117 (239)
T ss_pred HHHHHHHhCCCC--CCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCC
Confidence 334444444433 348999999999998888764 46778887765554443332211 2356777888888888
Q ss_pred CCCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 279 PSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 279 pd~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
++++||+|+++.+++++. +...++.++.++|+|||.+++.+.
T Consensus 118 ~~~~~D~I~~~~~l~~~~-~~~~~l~~~~~~L~~gG~li~~~~ 159 (239)
T PRK00216 118 PDNSFDAVTIAFGLRNVP-DIDKALREMYRVLKPGGRLVILEF 159 (239)
T ss_pred CCCCccEEEEecccccCC-CHHHHHHHHHHhccCCcEEEEEEe
Confidence 888999999999886665 478999999999999999998753
No 55
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.13 E-value=8.9e-10 Score=110.99 Aligned_cols=135 Identities=19% Similarity=0.154 Sum_probs=84.5
Q ss_pred CcccHHHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCCeEEEEecc
Q 009069 197 FPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERGVPALIGVMAS 273 (544)
Q Consensus 197 F~~ga~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~ 273 (544)
|+.|.........+.+......+.+|||+|||+|.++..+++. .++++|+++.++..+..+. ..+++...+.
T Consensus 98 fgtg~h~tt~~~l~~l~~~~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~-~~~~~~~~~~---- 172 (250)
T PRK00517 98 FGTGTHPTTRLCLEALEKLVLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENA-ELNGVELNVY---- 172 (250)
T ss_pred cCCCCCHHHHHHHHHHHhhcCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHH-HHcCCCceEE----
Confidence 4444444444444444322233458999999999988887765 3778888887765554433 3344421111
Q ss_pred ccCCCCCCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeCCCCccccccCCCcchhhhHhhhhhHHHHHHhh
Q 009069 274 IRLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSL 353 (544)
Q Consensus 274 ~~LPfpd~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~pp~~w~~~~~~w~~t~e~L~~~~~~ie~la~~l 353 (544)
++..+.+||+|+++.... ....++.++.++|||||+|++++... ...+.+...++..
T Consensus 173 --~~~~~~~fD~Vvani~~~----~~~~l~~~~~~~LkpgG~lilsgi~~-----------------~~~~~v~~~l~~~ 229 (250)
T PRK00517 173 --LPQGDLKADVIVANILAN----PLLELAPDLARLLKPGGRLILSGILE-----------------EQADEVLEAYEEA 229 (250)
T ss_pred --EccCCCCcCEEEEcCcHH----HHHHHHHHHHHhcCCCcEEEEEECcH-----------------hhHHHHHHHHHHC
Confidence 122223799999976431 12578999999999999999996521 1123456677778
Q ss_pred cceeee
Q 009069 354 CWKKLI 359 (544)
Q Consensus 354 ~w~~v~ 359 (544)
+|+.+.
T Consensus 230 Gf~~~~ 235 (250)
T PRK00517 230 GFTLDE 235 (250)
T ss_pred CCEEEE
Confidence 887654
No 56
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.13 E-value=2.5e-10 Score=108.36 Aligned_cols=117 Identities=21% Similarity=0.231 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC--C--cEEEeCCccchHHHHHHHHHHcCCC-eEEEEecccc
Q 009069 201 ADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--N--ILAVSFAPRDTHEAQVQFALERGVP-ALIGVMASIR 275 (544)
Q Consensus 201 a~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~--V~~vdisp~dls~a~v~~A~ergv~-~~~~v~d~~~ 275 (544)
.+.-...|.+.+.... ..+|||+|||+|.++..++++ . ++++|+++..+..++.. +..+++. +.+...|...
T Consensus 16 ~d~~t~lL~~~l~~~~--~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n-~~~n~~~~v~~~~~d~~~ 92 (170)
T PF05175_consen 16 LDAGTRLLLDNLPKHK--GGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRN-AERNGLENVEVVQSDLFE 92 (170)
T ss_dssp HHHHHHHHHHHHHHHT--TCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHH-HHHTTCTTEEEEESSTTT
T ss_pred CCHHHHHHHHHHhhcc--CCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHH-HHhcCccccccccccccc
Confidence 3344445566665443 338999999999999999886 3 88899988766555443 3344555 6666666533
Q ss_pred CCCCCCCeeEEEecccccccccC----hHHHHHHHHHcccCCcEEEEEeC
Q 009069 276 LPYPSRAFDMAHCSRCLIPWGQY----DGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 276 LPfpd~sFDlV~~~~~l~h~~~d----~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
+.++++||+|+|+.-++.-..+ ...++.++.+.|||||.|++...
T Consensus 93 -~~~~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~ 141 (170)
T PF05175_consen 93 -ALPDGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVIN 141 (170)
T ss_dssp -TCCTTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred -cccccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEee
Confidence 3447899999999866333321 16789999999999999988754
No 57
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.11 E-value=5.7e-10 Score=109.64 Aligned_cols=157 Identities=17% Similarity=0.211 Sum_probs=99.1
Q ss_pred cHHHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEecccc
Q 009069 200 GADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIR 275 (544)
Q Consensus 200 ga~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~A~ergv--~~~~~v~d~~~ 275 (544)
+.....+.+.+.++.......+|||+|||+|.++..+++. .++++|+++.++..++.+.. ..+. .+.+.+.|...
T Consensus 37 ~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~~-~~~~~~~i~~~~~d~~~ 115 (219)
T TIGR02021 37 GRAAMRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQ-GRDVAGNVEFEVNDLLS 115 (219)
T ss_pred HHHHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH-hcCCCCceEEEECChhh
Confidence 3444455566666521223458999999999999999876 46778887766655544333 2332 57788888777
Q ss_pred CCCCCCCeeEEEecccccccccC-hHHHHHHHHHcccCCcEEEEEeCCCCccccc----cCCCc---chhhhHhhhhhHH
Q 009069 276 LPYPSRAFDMAHCSRCLIPWGQY-DGLYLIEVDRVLRPGGYWILSGPPVNWESHW----KGWNR---TTEDLKSEQNGIE 347 (544)
Q Consensus 276 LPfpd~sFDlV~~~~~l~h~~~d-~~~~L~Ei~RVLKPGG~Lvis~pp~~w~~~~----~~w~~---t~e~L~~~~~~ie 347 (544)
++ ++||+|++..+++|++.. ...++.++.+++++|+++.+.. ...+.... ..|.. .........++++
T Consensus 116 ~~---~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (219)
T TIGR02021 116 LC---GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFAP-KTAWLAFLKMIGELFPGSSRATSAYLHPMTDLE 191 (219)
T ss_pred CC---CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEECC-CchHHHHHHHHHhhCcCcccccceEEecHHHHH
Confidence 65 789999999998887642 3788999999999777666542 11111000 00000 0001111235677
Q ss_pred HHHHhhcceeeeee
Q 009069 348 TIARSLCWKKLIQK 361 (544)
Q Consensus 348 ~la~~l~w~~v~~~ 361 (544)
.+++..+|+.+..+
T Consensus 192 ~~l~~~Gf~v~~~~ 205 (219)
T TIGR02021 192 RALGELGWKIVREG 205 (219)
T ss_pred HHHHHcCceeeeee
Confidence 88888888877653
No 58
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.10 E-value=4.6e-10 Score=114.84 Aligned_cols=133 Identities=20% Similarity=0.250 Sum_probs=88.8
Q ss_pred CCceecCCCCCCCcc-cHHHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHH
Q 009069 185 GDRFSFPGGGTMFPR-GADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFA 259 (544)
Q Consensus 185 ge~~~F~g~g~~F~~-ga~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A 259 (544)
+..+.|......|.. ..+.=.+.|.+.++...+. +|||+|||.|.++..|+++ .++.+|++...+..++...+
T Consensus 126 ~~~~~~~t~pGVFS~~~lD~GS~lLl~~l~~~~~~--~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~ 203 (300)
T COG2813 126 GHELTFKTLPGVFSRDKLDKGSRLLLETLPPDLGG--KVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLA 203 (300)
T ss_pred cCceEEEeCCCCCcCCCcChHHHHHHHhCCccCCC--cEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHH
Confidence 444555444333322 2333334566666544433 7999999999999999986 57888887766655555444
Q ss_pred HHcCCCeEEEEeccccCCCCCCCeeEEEecccccccccChH----HHHHHHHHcccCCcEEEEEeC
Q 009069 260 LERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYDG----LYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 260 ~ergv~~~~~v~d~~~LPfpd~sFDlV~~~~~l~h~~~d~~----~~L~Ei~RVLKPGG~Lvis~p 321 (544)
. +++....+..+....+..+ +||+|+|+.-+|.-..-.. +++.+..+.|++||.|.|+..
T Consensus 204 ~-N~~~~~~v~~s~~~~~v~~-kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 204 A-NGVENTEVWASNLYEPVEG-KFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred H-cCCCccEEEEecccccccc-cccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 3 4444323333444555555 9999999997754333223 899999999999999999976
No 59
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.10 E-value=3.8e-10 Score=123.46 Aligned_cols=111 Identities=13% Similarity=0.189 Sum_probs=82.5
Q ss_pred HHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccc--cCCCCCCC
Q 009069 207 DIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGVPALIGVMASI--RLPYPSRA 282 (544)
Q Consensus 207 ~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~--~LPfpd~s 282 (544)
.+.+.+.... ..+|||||||+|.++..|++. .++++|+++.++..+.. .......+.+...|.. .+++++++
T Consensus 28 ~il~~l~~~~--~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~--~~~~~~~i~~~~~d~~~~~~~~~~~~ 103 (475)
T PLN02336 28 EILSLLPPYE--GKSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNES--INGHYKNVKFMCADVTSPDLNISDGS 103 (475)
T ss_pred HHHhhcCccC--CCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHH--HhccCCceEEEEecccccccCCCCCC
Confidence 4445554333 348999999999999999986 57788887766643221 1111235677777764 57788899
Q ss_pred eeEEEecccccccccCh-HHHHHHHHHcccCCcEEEEEeC
Q 009069 283 FDMAHCSRCLIPWGQYD-GLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 283 FDlV~~~~~l~h~~~d~-~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
||+|+|+.+++|+.++. ..++.++.|+|||||++++...
T Consensus 104 fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~ 143 (475)
T PLN02336 104 VDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRES 143 (475)
T ss_pred EEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence 99999999998887543 7899999999999999999764
No 60
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.09 E-value=4.9e-10 Score=118.02 Aligned_cols=113 Identities=14% Similarity=0.113 Sum_probs=80.6
Q ss_pred HHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCC
Q 009069 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYP 279 (544)
Q Consensus 204 ~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfp 279 (544)
-.+.+.+.++... ..+|||+|||+|.++..++++ .++++|+++.++..++.... .+++...+...|... ..
T Consensus 184 gt~lLl~~l~~~~--~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~-~n~l~~~~~~~D~~~--~~ 258 (342)
T PRK09489 184 GSQLLLSTLTPHT--KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLA-ANGLEGEVFASNVFS--DI 258 (342)
T ss_pred HHHHHHHhccccC--CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHH-HcCCCCEEEEccccc--cc
Confidence 3334445444322 237999999999999999875 47888998877766654443 445565666555433 23
Q ss_pred CCCeeEEEecccccccccC----hHHHHHHHHHcccCCcEEEEEeC
Q 009069 280 SRAFDMAHCSRCLIPWGQY----DGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 280 d~sFDlV~~~~~l~h~~~d----~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
++.||+|+|+..+|..... ...++.++.++|||||.|+|+.+
T Consensus 259 ~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 259 KGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred CCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence 6789999999988653321 27899999999999999999975
No 61
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.09 E-value=3.3e-10 Score=113.25 Aligned_cols=135 Identities=19% Similarity=0.213 Sum_probs=85.8
Q ss_pred hcceeeecCCceecCCCCCCCcccHHHHHHHHHHHhcc-cCC----CCCEEEEeCCCCcHHHHHHhhCCcEEEeCCccch
Q 009069 177 NQNWVRFQGDRFSFPGGGTMFPRGADAYIDDIGKLINL-KDG----SIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDT 251 (544)
Q Consensus 177 ~q~w~~~~ge~~~F~g~g~~F~~ga~~~i~~L~~lL~l-~~g----~~r~VLDIGCGtG~~a~~La~~~V~~vdisp~dl 251 (544)
...||+.+|-+-.++.-+. .......+.+.+..+. .++ .+++|||+|||+|.++..|++.+..++++ |+
T Consensus 46 a~~wwd~~g~~~~Lh~mn~---~Rl~fi~d~~~~~v~~~~p~~k~~~g~~ilDvGCGgGLLSepLArlga~V~GI---D~ 119 (282)
T KOG1270|consen 46 AFTWWDEEGVRHPLHSMNQ---TRLPFIRDDLRNRVNNHAPGSKPLLGMKILDVGCGGGLLSEPLARLGAQVTGI---DA 119 (282)
T ss_pred cccccccccchhhhhhccc---hhhhHHHHHHHhcccccCCCccccCCceEEEeccCccccchhhHhhCCeeEee---cc
Confidence 4568887775444432211 1112222334444322 222 25789999999999999999986555555 44
Q ss_pred HHHHHHHHHHcC---C----C----eEEEEeccccCCCCCCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEe
Q 009069 252 HEAQVQFALERG---V----P----ALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 252 s~a~v~~A~erg---v----~----~~~~v~d~~~LPfpd~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
++.+++.|++.. + + +.+...+.+.+ .+.||+|+|+.+++|..+ +..++.-+.+.|||||.++|++
T Consensus 120 s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~---~~~fDaVvcsevleHV~d-p~~~l~~l~~~lkP~G~lfitt 195 (282)
T KOG1270|consen 120 SDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL---TGKFDAVVCSEVLEHVKD-PQEFLNCLSALLKPNGRLFITT 195 (282)
T ss_pred cHHHHHHHHHhhhcCchhccccceeeehhhcchhhc---ccccceeeeHHHHHHHhC-HHHHHHHHHHHhCCCCceEeee
Confidence 555555555431 0 1 12222233332 245999999999988875 8999999999999999999986
Q ss_pred C
Q 009069 321 P 321 (544)
Q Consensus 321 p 321 (544)
-
T Consensus 196 i 196 (282)
T KOG1270|consen 196 I 196 (282)
T ss_pred h
Confidence 4
No 62
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.09 E-value=2.1e-09 Score=103.38 Aligned_cols=96 Identities=18% Similarity=0.156 Sum_probs=71.7
Q ss_pred CCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEeccccCCCCCCCeeEEEeccccc
Q 009069 219 IRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRLPYPSRAFDMAHCSRCLI 293 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv-~~~~~v~d~~~LPfpd~sFDlV~~~~~l~ 293 (544)
+.+|||+|||+|.++..++.. .++++|+++.++..+.. .+.+.+. ++.+..+|...++ .+++||+|++.. ++
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~-~~~~~~~~~i~~i~~d~~~~~-~~~~fD~I~s~~-~~ 119 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLRE-VKAELGLNNVEIVNGRAEDFQ-HEEQFDVITSRA-LA 119 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHH-HHHHhCCCCeEEEecchhhcc-ccCCccEEEehh-hh
Confidence 458999999999988887643 48888888876654433 3334454 4788888887764 467899999865 32
Q ss_pred ccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 294 PWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 294 h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
+...++..+.++|||||.+++...
T Consensus 120 ----~~~~~~~~~~~~LkpgG~lvi~~~ 143 (181)
T TIGR00138 120 ----SLNVLLELTLNLLKVGGYFLAYKG 143 (181)
T ss_pred ----CHHHHHHHHHHhcCCCCEEEEEcC
Confidence 245788999999999999999854
No 63
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.09 E-value=5.5e-10 Score=113.64 Aligned_cols=103 Identities=19% Similarity=0.282 Sum_probs=75.2
Q ss_pred CCCEEEEeCCCCcH----HHHHHhhC---------CcEEEeCCccchHHHHHHHH---HHcC------------------
Q 009069 218 SIRTAIDTGCGVAS----WGAYLMSR---------NILAVSFAPRDTHEAQVQFA---LERG------------------ 263 (544)
Q Consensus 218 ~~r~VLDIGCGtG~----~a~~La~~---------~V~~vdisp~dls~a~v~~A---~erg------------------ 263 (544)
...+|||+|||+|. ++..|++. .|+++|+++.++..+....- .-++
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 34589999999994 55555442 47788887766654443210 0001
Q ss_pred ------CCeEEEEeccccCCCCCCCeeEEEecccccccccCh-HHHHHHHHHcccCCcEEEEEe
Q 009069 264 ------VPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYD-GLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 264 ------v~~~~~v~d~~~LPfpd~sFDlV~~~~~l~h~~~d~-~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
-.+.|.+.|....++++++||+|+|..+++|+.+.. ..++.++.++|+|||+|++..
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred EChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 136778888888887889999999999998886422 689999999999999999964
No 64
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.08 E-value=1.2e-09 Score=106.24 Aligned_cols=113 Identities=20% Similarity=0.215 Sum_probs=81.3
Q ss_pred HHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCC
Q 009069 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPY 278 (544)
Q Consensus 204 ~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-----~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPf 278 (544)
+.+.+.+.+... .+.+|||+|||+|.++..+++. .++++|+++..+........ ....+.+..+|...+++
T Consensus 27 ~~~~~~~~~~~~--~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~--~~~~i~~~~~d~~~~~~ 102 (223)
T TIGR01934 27 WRRRAVKLIGVF--KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE--LPLNIEFIQADAEALPF 102 (223)
T ss_pred HHHHHHHHhccC--CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc--cCCCceEEecchhcCCC
Confidence 334455554433 3448999999999999988765 46667775544432222221 12346777788888888
Q ss_pred CCCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 279 PSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 279 pd~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
++++||+|+++..+++.. +...+++++.++|+|||++++.+.
T Consensus 103 ~~~~~D~i~~~~~~~~~~-~~~~~l~~~~~~L~~gG~l~~~~~ 144 (223)
T TIGR01934 103 EDNSFDAVTIAFGLRNVT-DIQKALREMYRVLKPGGRLVILEF 144 (223)
T ss_pred CCCcEEEEEEeeeeCCcc-cHHHHHHHHHHHcCCCcEEEEEEe
Confidence 888999999999886655 478999999999999999998753
No 65
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.07 E-value=2.6e-09 Score=101.89 Aligned_cols=99 Identities=17% Similarity=0.195 Sum_probs=74.2
Q ss_pred CEEEEeCCCCcHHHHHHhhCC--cEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEeccccccccc
Q 009069 220 RTAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQ 297 (544)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~~--V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~sFDlV~~~~~l~h~~~ 297 (544)
.+|||+|||+|.++..+++++ ++++|+++.++..+..+.. ..+..+.+..+|....+ .++||+|+++..+++..+
T Consensus 21 ~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~-~~~~~~~~~~~d~~~~~--~~~fD~Vi~n~p~~~~~~ 97 (179)
T TIGR00537 21 DDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAK-LNNVGLDVVMTDLFKGV--RGKFDVILFNPPYLPLED 97 (179)
T ss_pred CeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHH-HcCCceEEEEccccccc--CCcccEEEECCCCCCCcc
Confidence 379999999999999998873 6788888776655544443 34456667777765543 458999999987765543
Q ss_pred C--------------------hHHHHHHHHHcccCCcEEEEEeC
Q 009069 298 Y--------------------DGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 298 d--------------------~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
. ...++.++.|+|||||.+++..+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~ 141 (179)
T TIGR00537 98 DLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQS 141 (179)
T ss_pred hhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEe
Confidence 1 14679999999999999999865
No 66
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.06 E-value=1.3e-09 Score=105.66 Aligned_cols=100 Identities=17% Similarity=0.255 Sum_probs=76.0
Q ss_pred CEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEeccccCC---CCCCCeeEEEeccc
Q 009069 220 RTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRLP---YPSRAFDMAHCSRC 291 (544)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv-~~~~~v~d~~~LP---fpd~sFDlV~~~~~ 291 (544)
.+|||||||+|.++..++++ .++++|+++.++..+..+.. ..++ ++.+..+|+..++ +++++||.|+++..
T Consensus 18 ~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~-~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~p 96 (194)
T TIGR00091 18 PLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKAN-KLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNFP 96 (194)
T ss_pred ceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHH-HhCCCCEEEEccCHHHHHHhhCCCCceeEEEEECC
Confidence 47999999999999999876 68889998776655554433 3333 5788888876654 55679999998765
Q ss_pred ccccccCh--------HHHHHHHHHcccCCcEEEEEeC
Q 009069 292 LIPWGQYD--------GLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 292 l~h~~~d~--------~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
. +|+... ..++.++.|+|||||.|++...
T Consensus 97 d-pw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td 133 (194)
T TIGR00091 97 D-PWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTD 133 (194)
T ss_pred C-cCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeC
Confidence 4 554422 4789999999999999999864
No 67
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.06 E-value=3.7e-09 Score=101.50 Aligned_cols=133 Identities=13% Similarity=-0.024 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEecccc
Q 009069 201 ADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIR 275 (544)
Q Consensus 201 a~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv-~~~~~v~d~~~ 275 (544)
.+.....+.+.+.... +.+|||+|||+|.++..++++ .++++|+++.++..++..... .+. .+.+..++..
T Consensus 16 ~~~~r~~~~~~l~~~~--~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~-~~~~~i~~~~~d~~- 91 (187)
T PRK08287 16 KEEVRALALSKLELHR--AKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQR-FGCGNIDIIPGEAP- 91 (187)
T ss_pred hHHHHHHHHHhcCCCC--CCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH-hCCCCeEEEecCch-
Confidence 3333334445555444 348999999999999988764 578889988766555443332 333 4566655543
Q ss_pred CCCCCCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeCCCCccccccCCCcchhhhHhhhhhHHHHHHhhcc
Q 009069 276 LPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCW 355 (544)
Q Consensus 276 LPfpd~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~pp~~w~~~~~~w~~t~e~L~~~~~~ie~la~~l~w 355 (544)
.++ .++||+|++..... ....++.++.++|+|||+|++..... ...+++..+.++.+|
T Consensus 92 ~~~-~~~~D~v~~~~~~~----~~~~~l~~~~~~Lk~gG~lv~~~~~~-----------------~~~~~~~~~l~~~g~ 149 (187)
T PRK08287 92 IEL-PGKADAIFIGGSGG----NLTAIIDWSLAHLHPGGRLVLTFILL-----------------ENLHSALAHLEKCGV 149 (187)
T ss_pred hhc-CcCCCEEEECCCcc----CHHHHHHHHHHhcCCCeEEEEEEecH-----------------hhHHHHHHHHHHCCC
Confidence 333 35799999876542 23578999999999999999974311 112345567777888
Q ss_pred eeee
Q 009069 356 KKLI 359 (544)
Q Consensus 356 ~~v~ 359 (544)
+.+.
T Consensus 150 ~~~~ 153 (187)
T PRK08287 150 SELD 153 (187)
T ss_pred Ccce
Confidence 6554
No 68
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.04 E-value=1.6e-09 Score=115.41 Aligned_cols=112 Identities=12% Similarity=0.120 Sum_probs=77.3
Q ss_pred HHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC----CeEEEEeccccCC
Q 009069 206 DDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGV----PALIGVMASIRLP 277 (544)
Q Consensus 206 ~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv----~~~~~v~d~~~LP 277 (544)
+.+.+.++...+ .+|||+|||+|.++..++++ .++++|+++.++..++..... ++. .+.+...|... .
T Consensus 218 rllL~~lp~~~~--~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~-n~~~~~~~v~~~~~D~l~-~ 293 (378)
T PRK15001 218 RFFMQHLPENLE--GEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVET-NMPEALDRCEFMINNALS-G 293 (378)
T ss_pred HHHHHhCCcccC--CeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH-cCcccCceEEEEEccccc-c
Confidence 334555543322 37999999999999999875 588889987777655544432 222 34555555432 2
Q ss_pred CCCCCeeEEEecccccccc--cC--hHHHHHHHHHcccCCcEEEEEeC
Q 009069 278 YPSRAFDMAHCSRCLIPWG--QY--DGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 278 fpd~sFDlV~~~~~l~h~~--~d--~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
+++.+||+|+|+..+|.-. .+ ...++.++.++|||||.|+++..
T Consensus 294 ~~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~n 341 (378)
T PRK15001 294 VEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVAN 341 (378)
T ss_pred CCCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEe
Confidence 3456899999998775432 11 15789999999999999999964
No 69
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.04 E-value=1.8e-09 Score=107.02 Aligned_cols=95 Identities=17% Similarity=0.121 Sum_probs=72.2
Q ss_pred CEEEEeCCCCcHHHHHHhhCC--cEEEeCCccchHHHHHHHHHHcC----------------CCeEEEEeccccCCCC-C
Q 009069 220 RTAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQFALERG----------------VPALIGVMASIRLPYP-S 280 (544)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~~--V~~vdisp~dls~a~v~~A~erg----------------v~~~~~v~d~~~LPfp-d 280 (544)
.+|||+|||.|..+..|+++| |+++|+++..+..++ .+++ ..+.+.++|...++.. .
T Consensus 39 ~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~----~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~ 114 (218)
T PRK13255 39 SRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFF----AENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADL 114 (218)
T ss_pred CeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHH----HHcCCCccccccccccccccCceEEEECcccCCCcccC
Confidence 489999999999999999985 666666665554322 2332 3466777887777533 2
Q ss_pred CCeeEEEecccccccccCh-HHHHHHHHHcccCCcEEEE
Q 009069 281 RAFDMAHCSRCLIPWGQYD-GLYLIEVDRVLRPGGYWIL 318 (544)
Q Consensus 281 ~sFDlV~~~~~l~h~~~d~-~~~L~Ei~RVLKPGG~Lvi 318 (544)
..||+|+...+++|++.+. ..++..+.++|||||.+++
T Consensus 115 ~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 115 ADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred CCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEE
Confidence 5899999999998887655 7899999999999997555
No 70
>PRK06202 hypothetical protein; Provisional
Probab=99.03 E-value=9.5e-10 Score=109.13 Aligned_cols=96 Identities=19% Similarity=0.191 Sum_probs=69.1
Q ss_pred CCCEEEEeCCCCcHHHHHHhhC--------CcEEEeCCccchHHHHHHHHHHcC--CCeEEEEeccccCCCCCCCeeEEE
Q 009069 218 SIRTAIDTGCGVASWGAYLMSR--------NILAVSFAPRDTHEAQVQFALERG--VPALIGVMASIRLPYPSRAFDMAH 287 (544)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~--------~V~~vdisp~dls~a~v~~A~erg--v~~~~~v~d~~~LPfpd~sFDlV~ 287 (544)
...+|||+|||+|.++..|++. .++++|+++.++. .|.++. .++.+.+.+...+++++++||+|+
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~-----~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~ 134 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVA-----FARANPRRPGVTFRQAVSDELVAEGERFDVVT 134 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHH-----HHHhccccCCCeEEEEecccccccCCCccEEE
Confidence 3458999999999988887641 4677777665554 443331 234555566667777788999999
Q ss_pred ecccccccccCh-HHHHHHHHHcccCCcEEEEEe
Q 009069 288 CSRCLIPWGQYD-GLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 288 ~~~~l~h~~~d~-~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
|+.++||+.+.. ..+++++.|++| |.+++..
T Consensus 135 ~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~d 166 (232)
T PRK06202 135 SNHFLHHLDDAEVVRLLADSAALAR--RLVLHND 166 (232)
T ss_pred ECCeeecCChHHHHHHHHHHHHhcC--eeEEEec
Confidence 999998887632 579999999998 5555543
No 71
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.03 E-value=3.1e-09 Score=110.80 Aligned_cols=153 Identities=16% Similarity=0.145 Sum_probs=91.2
Q ss_pred HHHHHHHHHHhccc-CCCCCEEEEeCCCCcHHHHHHhhCC--cEEEeCCccchHHHHHHHHHH-----cCCCeEEEEecc
Q 009069 202 DAYIDDIGKLINLK-DGSIRTAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQFALE-----RGVPALIGVMAS 273 (544)
Q Consensus 202 ~~~i~~L~~lL~l~-~g~~r~VLDIGCGtG~~a~~La~~~--V~~vdisp~dls~a~v~~A~e-----rgv~~~~~v~d~ 273 (544)
...++.+.+++... ...+.+|||+|||+|.++..|++++ ++++|+++.++..++.+.... ....+.+.+.|.
T Consensus 127 ~~~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl 206 (315)
T PLN02585 127 AQTVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALEGAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDL 206 (315)
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcch
Confidence 34455566666432 1234589999999999999999874 788888887776555443221 022456666665
Q ss_pred ccCCCCCCCeeEEEecccccccccCh-HHHHHHHHHcccCCcEEEEEeCCCCccccc----c-CCCcch---hhhHhhhh
Q 009069 274 IRLPYPSRAFDMAHCSRCLIPWGQYD-GLYLIEVDRVLRPGGYWILSGPPVNWESHW----K-GWNRTT---EDLKSEQN 344 (544)
Q Consensus 274 ~~LPfpd~sFDlV~~~~~l~h~~~d~-~~~L~Ei~RVLKPGG~Lvis~pp~~w~~~~----~-~w~~t~---e~L~~~~~ 344 (544)
..+ +++||+|+|..+++|++++. ..++..+.+ +.+||. +++..+..+.... . .|.... .......+
T Consensus 207 ~~l---~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~g~l-iIs~~p~~~~~~~l~~~g~~~~g~~~~~r~y~~s~e 281 (315)
T PLN02585 207 ESL---SGKYDTVTCLDVLIHYPQDKADGMIAHLAS-LAEKRL-IISFAPKTLYYDILKRIGELFPGPSKATRAYLHAEA 281 (315)
T ss_pred hhc---CCCcCEEEEcCEEEecCHHHHHHHHHHHHh-hcCCEE-EEEeCCcchHHHHHHHHHhhcCCCCcCceeeeCCHH
Confidence 443 57899999999998887644 345666654 455555 4454433332110 0 011000 01111245
Q ss_pred hHHHHHHhhcceeee
Q 009069 345 GIETIARSLCWKKLI 359 (544)
Q Consensus 345 ~ie~la~~l~w~~v~ 359 (544)
+++.+.+..+|+...
T Consensus 282 el~~lL~~AGf~v~~ 296 (315)
T PLN02585 282 DVERALKKAGWKVAR 296 (315)
T ss_pred HHHHHHHHCCCEEEE
Confidence 677888888888654
No 72
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.03 E-value=2.1e-09 Score=105.07 Aligned_cols=107 Identities=15% Similarity=0.122 Sum_probs=76.4
Q ss_pred HHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEeccccC
Q 009069 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIRL 276 (544)
Q Consensus 204 ~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-----~V~~vdisp~dls~a~v~~A~ergv--~~~~~v~d~~~L 276 (544)
....+.+.+....+. +|||+|||+|..+..|++. .++++|+++.++..++.++. ..+. .+.+..+|....
T Consensus 60 ~~~~~~~~l~~~~~~--~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~-~~~~~~~v~~~~~d~~~~ 136 (205)
T PRK13944 60 MVAMMCELIEPRPGM--KILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIE-RLGYWGVVEVYHGDGKRG 136 (205)
T ss_pred HHHHHHHhcCCCCCC--EEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHH-HcCCCCcEEEEECCcccC
Confidence 445566666555444 8999999999999888753 47888888766654443333 3343 367777787665
Q ss_pred CCCCCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEe
Q 009069 277 PYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 277 Pfpd~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
.....+||+|++..++.+.+ .++.++|+|||.|++..
T Consensus 137 ~~~~~~fD~Ii~~~~~~~~~-------~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 137 LEKHAPFDAIIVTAAASTIP-------SALVRQLKDGGVLVIPV 173 (205)
T ss_pred CccCCCccEEEEccCcchhh-------HHHHHhcCcCcEEEEEE
Confidence 44567899999988775433 47889999999999864
No 73
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.01 E-value=2e-09 Score=105.07 Aligned_cols=117 Identities=19% Similarity=0.239 Sum_probs=85.4
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhCC--cEEEeCCccchHHHHHHHHHHcCCCeEEEEec-cccCCC
Q 009069 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQFALERGVPALIGVMA-SIRLPY 278 (544)
Q Consensus 202 ~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~--V~~vdisp~dls~a~v~~A~ergv~~~~~v~d-~~~LPf 278 (544)
.+..++..+++.+..+..+-|||||||+|..+..|.+.+ ++++|||+.|++.++. +.+...+..+| -+-+||
T Consensus 34 ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~~-----~e~egdlil~DMG~Glpf 108 (270)
T KOG1541|consen 34 AEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAVE-----RELEGDLILCDMGEGLPF 108 (270)
T ss_pred HHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHHHH-----hhhhcCeeeeecCCCCCC
Confidence 334556667777776667789999999999999998875 5677777777765553 22222233333 378999
Q ss_pred CCCCeeEEEecccccccccC-------h----HHHHHHHHHcccCCcEEEEEeCCCC
Q 009069 279 PSRAFDMAHCSRCLIPWGQY-------D----GLYLIEVDRVLRPGGYWILSGPPVN 324 (544)
Q Consensus 279 pd~sFDlV~~~~~l~h~~~d-------~----~~~L~Ei~RVLKPGG~Lvis~pp~~ 324 (544)
.+++||.|++..++ +|.-+ + ..|+..++.+|++|+..++.-.|.+
T Consensus 109 rpGtFDg~ISISAv-QWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen 164 (270)
T KOG1541|consen 109 RPGTFDGVISISAV-QWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPEN 164 (270)
T ss_pred CCCccceEEEeeee-eeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecccc
Confidence 99999999997776 55421 2 3578889999999999999976554
No 74
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.00 E-value=2.4e-09 Score=105.89 Aligned_cols=102 Identities=16% Similarity=0.261 Sum_probs=75.3
Q ss_pred CCEEEEeCCCCcHHHHHHhhCC--cEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCC-CCCCCeeEEEeccccccc
Q 009069 219 IRTAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLP-YPSRAFDMAHCSRCLIPW 295 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~--V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LP-fpd~sFDlV~~~~~l~h~ 295 (544)
..+|||||||+|.++..+.+.+ ++++|+++..+..+...+. ..+..+.+...+....+ ..++.||+|++..+++|.
T Consensus 49 ~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~~~ 127 (233)
T PRK05134 49 GKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLHAL-ESGLKIDYRQTTAEELAAEHPGQFDVVTCMEMLEHV 127 (233)
T ss_pred CCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHHHH-HcCCceEEEecCHHHhhhhcCCCccEEEEhhHhhcc
Confidence 4589999999999999988774 6666776655443333222 23445566666665554 345789999999988766
Q ss_pred ccChHHHHHHHHHcccCCcEEEEEeCC
Q 009069 296 GQYDGLYLIEVDRVLRPGGYWILSGPP 322 (544)
Q Consensus 296 ~~d~~~~L~Ei~RVLKPGG~Lvis~pp 322 (544)
. ++..+|.++.++|+|||.++++.+.
T Consensus 128 ~-~~~~~l~~~~~~L~~gG~l~v~~~~ 153 (233)
T PRK05134 128 P-DPASFVRACAKLVKPGGLVFFSTLN 153 (233)
T ss_pred C-CHHHHHHHHHHHcCCCcEEEEEecC
Confidence 5 4788999999999999999998653
No 75
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=98.99 E-value=1.1e-08 Score=101.77 Aligned_cols=137 Identities=15% Similarity=0.228 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEecccc
Q 009069 201 ADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIR 275 (544)
Q Consensus 201 a~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv-~~~~~v~d~~~ 275 (544)
....++.+.+.+.. ...+|||+|||+|.++..+++. .++++|+++..+..+.... ...+. ++.+..+|...
T Consensus 73 ~~~l~~~~l~~~~~---~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~-~~~~~~~~~~~~~d~~~ 148 (251)
T TIGR03534 73 TEELVEAALERLKK---GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNA-ARLGLDNVTFLQSDWFE 148 (251)
T ss_pred hHHHHHHHHHhccc---CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH-HHcCCCeEEEEECchhc
Confidence 44555555555432 2347999999999999999875 5788888777665444333 33444 36777777654
Q ss_pred CCCCCCCeeEEEecccccccc------cC-------------------hHHHHHHHHHcccCCcEEEEEeCCCCcccccc
Q 009069 276 LPYPSRAFDMAHCSRCLIPWG------QY-------------------DGLYLIEVDRVLRPGGYWILSGPPVNWESHWK 330 (544)
Q Consensus 276 LPfpd~sFDlV~~~~~l~h~~------~d-------------------~~~~L~Ei~RVLKPGG~Lvis~pp~~w~~~~~ 330 (544)
++++++||+|+++.-++... .+ ...++.++.++|+|||.+++....
T Consensus 149 -~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~-------- 219 (251)
T TIGR03534 149 -PLPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGY-------- 219 (251)
T ss_pred -cCcCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECc--------
Confidence 55678999999976443211 00 025788999999999999997531
Q ss_pred CCCcchhhhHhhhhhHHHHHHhhcceeeee
Q 009069 331 GWNRTTEDLKSEQNGIETIARSLCWKKLIQ 360 (544)
Q Consensus 331 ~w~~t~e~L~~~~~~ie~la~~l~w~~v~~ 360 (544)
.. .+.++++.++.+|+.+..
T Consensus 220 ---~~-------~~~~~~~l~~~gf~~v~~ 239 (251)
T TIGR03534 220 ---DQ-------GEAVRALFEAAGFADVET 239 (251)
T ss_pred ---cH-------HHHHHHHHHhCCCCceEE
Confidence 11 123556667777765543
No 76
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=98.99 E-value=1.7e-09 Score=104.58 Aligned_cols=105 Identities=23% Similarity=0.287 Sum_probs=72.6
Q ss_pred ccCCCCCEEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEeccc
Q 009069 214 LKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRC 291 (544)
Q Consensus 214 l~~g~~r~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~sFDlV~~~~~ 291 (544)
+..+..+++||+|||.|.++..|+.+ .++++|+++..+..+..+.+ ....+.+.+++.... .|+++||+|+++.+
T Consensus 39 Lp~~ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~--~~~~V~~~~~dvp~~-~P~~~FDLIV~SEV 115 (201)
T PF05401_consen 39 LPRRRYRRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLA--GLPHVEWIQADVPEF-WPEGRFDLIVLSEV 115 (201)
T ss_dssp HTTSSEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTT--T-SSEEEEES-TTT----SS-EEEEEEES-
T ss_pred cCccccceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcC--CCCCeEEEECcCCCC-CCCCCeeEEEEehH
Confidence 34555668999999999999999998 68888886655443333222 123578888776553 57899999999999
Q ss_pred ccccccC--hHHHHHHHHHcccCCcEEEEEeC
Q 009069 292 LIPWGQY--DGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 292 l~h~~~d--~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
++.+.+. ...++..+.+.|+|||.||+...
T Consensus 116 lYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 116 LYYLDDAEDLRAALDRLVAALAPGGHLVFGHA 147 (201)
T ss_dssp GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred hHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 9777642 26789999999999999999753
No 77
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.98 E-value=3.5e-09 Score=112.68 Aligned_cols=101 Identities=21% Similarity=0.256 Sum_probs=79.1
Q ss_pred CCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEeccccC--CCCCCCeeEEEeccc
Q 009069 219 IRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRL--PYPSRAFDMAHCSRC 291 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv-~~~~~v~d~~~L--Pfpd~sFDlV~~~~~ 291 (544)
...+||||||+|.++..++++ .++++|+++.++..+..+.. ..++ ++.+..+|+..+ .+++++||.|++++.
T Consensus 123 ~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~-~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnFP 201 (390)
T PRK14121 123 EKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIE-LLNLKNLLIINYDARLLLELLPSNSVEKIFVHFP 201 (390)
T ss_pred CCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHH-HcCCCcEEEEECCHHHhhhhCCCCceeEEEEeCC
Confidence 448999999999999999975 68899998877766655443 4444 677788887654 578999999998765
Q ss_pred ccccccCh------HHHHHHHHHcccCCcEEEEEeC
Q 009069 292 LIPWGQYD------GLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 292 l~h~~~d~------~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
. +|+... ..++.++.|+|+|||.+.+.+.
T Consensus 202 d-PW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD 236 (390)
T PRK14121 202 V-PWDKKPHRRVISEDFLNEALRVLKPGGTLELRTD 236 (390)
T ss_pred C-CccccchhhccHHHHHHHHHHHcCCCcEEEEEEE
Confidence 4 665433 4799999999999999999753
No 78
>PRK04266 fibrillarin; Provisional
Probab=98.98 E-value=1.1e-08 Score=101.97 Aligned_cols=134 Identities=16% Similarity=0.131 Sum_probs=84.4
Q ss_pred HhcccCCCCCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccC----CCCCCC
Q 009069 211 LINLKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRL----PYPSRA 282 (544)
Q Consensus 211 lL~l~~g~~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~L----Pfpd~s 282 (544)
.+.+.++. +|||+|||+|.++..|++. .|.++|+++.++.... +.+.++ .++.+..+|.... ++ .++
T Consensus 67 ~l~i~~g~--~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~-~~a~~~-~nv~~i~~D~~~~~~~~~l-~~~ 141 (226)
T PRK04266 67 NFPIKKGS--KVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELL-EVAEER-KNIIPILADARKPERYAHV-VEK 141 (226)
T ss_pred hCCCCCCC--EEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHH-HHhhhc-CCcEEEECCCCCcchhhhc-ccc
Confidence 45555554 8999999999999999885 4889999887775433 344433 3456666676431 22 356
Q ss_pred eeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeCCCCccccccCCCcchhhhHhhhhhHHHHHHhhcceeeee
Q 009069 283 FDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQ 360 (544)
Q Consensus 283 FDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~pp~~w~~~~~~w~~t~e~L~~~~~~ie~la~~l~w~~v~~ 360 (544)
||+|++.... +.....++.++.|+|||||.|+++.+... -.|....... .+.....++..+++.+..
T Consensus 142 ~D~i~~d~~~---p~~~~~~L~~~~r~LKpGG~lvI~v~~~~-----~d~~~~~~~~---~~~~~~~l~~aGF~~i~~ 208 (226)
T PRK04266 142 VDVIYQDVAQ---PNQAEIAIDNAEFFLKDGGYLLLAIKARS-----IDVTKDPKEI---FKEEIRKLEEGGFEILEV 208 (226)
T ss_pred CCEEEECCCC---hhHHHHHHHHHHHhcCCCcEEEEEEeccc-----ccCcCCHHHH---HHHHHHHHHHcCCeEEEE
Confidence 9999864321 11124578999999999999999754211 0111222111 223335667778876654
No 79
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.97 E-value=1.1e-08 Score=100.27 Aligned_cols=101 Identities=17% Similarity=0.260 Sum_probs=76.5
Q ss_pred CCEEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEeccccCCCC-CCCeeEEEecccccc
Q 009069 219 IRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRLPYP-SRAFDMAHCSRCLIP 294 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~A~ergv-~~~~~v~d~~~LPfp-d~sFDlV~~~~~l~h 294 (544)
..+|||+|||+|.++..+++. .++++|+++.++..+..+.. ..+. .+.+...+....+.. .++||+|++..++++
T Consensus 46 ~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~-~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~~ 124 (224)
T TIGR01983 46 GLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAK-KDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVLEH 124 (224)
T ss_pred CCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHH-HcCCCceEEEeCCHHHhhcCCCCCccEEEehhHHHh
Confidence 458999999999999988775 46677776665544443332 2344 467777777666644 378999999998866
Q ss_pred cccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 295 WGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 295 ~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
.. ++..++.++.++|+|||.++++..
T Consensus 125 ~~-~~~~~l~~~~~~L~~gG~l~i~~~ 150 (224)
T TIGR01983 125 VP-DPQAFIRACAQLLKPGGILFFSTI 150 (224)
T ss_pred CC-CHHHHHHHHHHhcCCCcEEEEEec
Confidence 65 578999999999999999998864
No 80
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.97 E-value=8.8e-09 Score=106.52 Aligned_cols=110 Identities=17% Similarity=0.209 Sum_probs=77.9
Q ss_pred HHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEeccccCCCC
Q 009069 206 DDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIRLPYP 279 (544)
Q Consensus 206 ~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv--~~~~~v~d~~~LPfp 279 (544)
+.+.+.+.... ..+|||||||+|.++..++++ .++++|+ +..+..+ .+.+.+.+. .+.+..+|....+++
T Consensus 139 ~~l~~~~~~~~--~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a-~~~~~~~gl~~rv~~~~~d~~~~~~~ 214 (306)
T TIGR02716 139 QLLLEEAKLDG--VKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLV-NENAAEKGVADRMRGIAVDIYKESYP 214 (306)
T ss_pred HHHHHHcCCCC--CCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHH-HHHHHhCCccceEEEEecCccCCCCC
Confidence 33444444443 348999999999999999876 3556665 3333222 223334444 367777887766665
Q ss_pred CCCeeEEEecccccccccCh-HHHHHHHHHcccCCcEEEEEeC
Q 009069 280 SRAFDMAHCSRCLIPWGQYD-GLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 280 d~sFDlV~~~~~l~h~~~d~-~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
+ +|+|+++.++|+|.++. ..+|+++.++|||||.|++.+.
T Consensus 215 ~--~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 215 E--ADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred C--CCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 4 69999999998887644 6899999999999999999864
No 81
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.96 E-value=4.3e-09 Score=103.58 Aligned_cols=109 Identities=14% Similarity=0.146 Sum_probs=77.8
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEecccc
Q 009069 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIR 275 (544)
Q Consensus 202 ~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-----~V~~vdisp~dls~a~v~~A~ergv-~~~~~v~d~~~ 275 (544)
......+.+.+.+..+. +|||||||+|.++..|++. .++++|+++.....++..+. ..+. ++.+..+|...
T Consensus 62 p~~~~~~~~~l~~~~g~--~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~-~~g~~~v~~~~gd~~~ 138 (212)
T PRK13942 62 IHMVAIMCELLDLKEGM--KVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLK-KLGYDNVEVIVGDGTL 138 (212)
T ss_pred HHHHHHHHHHcCCCCcC--EEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHH-HcCCCCeEEEECCccc
Confidence 33445666666666554 8999999999999888764 57888887766655444333 3343 57888888766
Q ss_pred CCCCCCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEe
Q 009069 276 LPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 276 LPfpd~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
...+.+.||+|++..+..+. ...+.+.|||||.|++..
T Consensus 139 ~~~~~~~fD~I~~~~~~~~~-------~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 139 GYEENAPYDRIYVTAAGPDI-------PKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred CCCcCCCcCEEEECCCcccc-------hHHHHHhhCCCcEEEEEE
Confidence 65567889999998765332 346777899999999864
No 82
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=98.95 E-value=4.9e-09 Score=107.42 Aligned_cols=111 Identities=21% Similarity=0.246 Sum_probs=82.6
Q ss_pred HHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhCCc-EEEeCCccchHHHHHHHHHHc-CC--CeEEEEeccccCCCCC
Q 009069 205 IDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNI-LAVSFAPRDTHEAQVQFALER-GV--PALIGVMASIRLPYPS 280 (544)
Q Consensus 205 i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~V-~~vdisp~dls~a~v~~A~er-gv--~~~~~v~d~~~LPfpd 280 (544)
.+++...++ +-.+++|||||||.|.++.+|+.+|. .+++++|....-.|-+++.+- +. .+.+.-...+.+|. .
T Consensus 104 W~rl~p~l~--~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~ 180 (315)
T PF08003_consen 104 WDRLLPHLP--DLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN-L 180 (315)
T ss_pred HHHHHhhhC--CcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc-c
Confidence 344554442 33466999999999999999999864 456776666655555554432 22 23333346888887 7
Q ss_pred CCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEE
Q 009069 281 RAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILS 319 (544)
Q Consensus 281 ~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis 319 (544)
++||+|+|..+|.|..+ |...|.++...|+|||.|++.
T Consensus 181 ~~FDtVF~MGVLYHrr~-Pl~~L~~Lk~~L~~gGeLvLE 218 (315)
T PF08003_consen 181 GAFDTVFSMGVLYHRRS-PLDHLKQLKDSLRPGGELVLE 218 (315)
T ss_pred CCcCEEEEeeehhccCC-HHHHHHHHHHhhCCCCEEEEE
Confidence 89999999999988775 899999999999999999986
No 83
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=98.95 E-value=1.1e-08 Score=107.24 Aligned_cols=112 Identities=15% Similarity=0.194 Sum_probs=80.3
Q ss_pred HHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEeccccCCCCCCCe
Q 009069 207 DIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRLPYPSRAF 283 (544)
Q Consensus 207 ~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~A~ergv-~~~~~v~d~~~LPfpd~sF 283 (544)
.+.++....++ .+|||+|||+|.++..++.. .+.++|+++.++..+..++.. .+. .+.+...|...+|+++++|
T Consensus 173 ~~~~l~~~~~g--~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~~-~g~~~i~~~~~D~~~l~~~~~~~ 249 (329)
T TIGR01177 173 AMVNLARVTEG--DRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLEH-YGIEDFFVKRGDATKLPLSSESV 249 (329)
T ss_pred HHHHHhCCCCc--CEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHHH-hCCCCCeEEecchhcCCcccCCC
Confidence 34444444444 48999999999988776654 577888888777655544432 333 3577788999999888999
Q ss_pred eEEEecccccc---c----c-cChHHHHHHHHHcccCCcEEEEEeC
Q 009069 284 DMAHCSRCLIP---W----G-QYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 284 DlV~~~~~l~h---~----~-~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
|+|+++.-+.. . . +....++.++.|+|||||++++..+
T Consensus 250 D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~ 295 (329)
T TIGR01177 250 DAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVP 295 (329)
T ss_pred CEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEc
Confidence 99999643211 0 1 1126899999999999999999876
No 84
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.94 E-value=6.1e-09 Score=102.35 Aligned_cols=111 Identities=23% Similarity=0.282 Sum_probs=75.1
Q ss_pred HHHHHHHHHHhcc-cCCCCCEEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEeccccC
Q 009069 202 DAYIDDIGKLINL-KDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIRL 276 (544)
Q Consensus 202 ~~~i~~L~~lL~l-~~g~~r~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~A~ergv--~~~~~v~d~~~L 276 (544)
....+.+.+.+.. ......+|||||||+|.++..|++. .++++|+++.++..++..+.. .+. .+.+..+| +
T Consensus 46 ~~~~~~~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~~-~~~~~~i~~~~~d---~ 121 (230)
T PRK07580 46 QRMRDTVLSWLPADGDLTGLRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAPE-AGLAGNITFEVGD---L 121 (230)
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHh-cCCccCcEEEEcC---c
Confidence 3344455555543 1223458999999999999999876 477788877766655544332 233 45666665 4
Q ss_pred CCCCCCeeEEEecccccccccCh-HHHHHHHHHcccCCcEE
Q 009069 277 PYPSRAFDMAHCSRCLIPWGQYD-GLYLIEVDRVLRPGGYW 316 (544)
Q Consensus 277 Pfpd~sFDlV~~~~~l~h~~~d~-~~~L~Ei~RVLKPGG~L 316 (544)
+..+++||+|++..+++|+.... ..+++++.+.+++++.+
T Consensus 122 ~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~i 162 (230)
T PRK07580 122 ESLLGRFDTVVCLDVLIHYPQEDAARMLAHLASLTRGSLIF 162 (230)
T ss_pred hhccCCcCEEEEcchhhcCCHHHHHHHHHHHHhhcCCeEEE
Confidence 45568899999999998877533 67888888877544443
No 85
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=98.93 E-value=9.3e-09 Score=101.12 Aligned_cols=107 Identities=16% Similarity=0.204 Sum_probs=76.2
Q ss_pred HHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC--C---cEEEeCCccchHHHHHHHHHHcCC-CeEEEEeccccCC
Q 009069 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--N---ILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRLP 277 (544)
Q Consensus 204 ~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~---V~~vdisp~dls~a~v~~A~ergv-~~~~~v~d~~~LP 277 (544)
....+.+.+.+..+. +|||||||+|.++..|++. . ++++|+++..+..+...+ .+.+. ++.+..+|.....
T Consensus 65 ~~~~~~~~l~~~~~~--~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~-~~~g~~~v~~~~~d~~~~~ 141 (215)
T TIGR00080 65 MVAMMTELLELKPGM--KVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRL-RKLGLDNVIVIVGDGTQGW 141 (215)
T ss_pred HHHHHHHHhCCCCcC--EEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHH-HHCCCCCeEEEECCcccCC
Confidence 445566666665544 8999999999999998875 2 788888876665444333 33444 5777777776554
Q ss_pred CCCCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEe
Q 009069 278 YPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 278 fpd~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
.....||+|++.....+ +...+.+.|+|||+|++..
T Consensus 142 ~~~~~fD~Ii~~~~~~~-------~~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 142 EPLAPYDRIYVTAAGPK-------IPEALIDQLKEGGILVMPV 177 (215)
T ss_pred cccCCCCEEEEcCCccc-------ccHHHHHhcCcCcEEEEEE
Confidence 44568999998765432 3456788999999999874
No 86
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.93 E-value=1.1e-08 Score=98.87 Aligned_cols=130 Identities=23% Similarity=0.234 Sum_probs=81.8
Q ss_pred CEEEEeCCCCcHHHHHHhhC-C--cEEEeCCccchHHHHHHHHHHcCCCeEEEEecccc-C-CCCCCCeeEEEecccccc
Q 009069 220 RTAIDTGCGVASWGAYLMSR-N--ILAVSFAPRDTHEAQVQFALERGVPALIGVMASIR-L-PYPSRAFDMAHCSRCLIP 294 (544)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~-~--V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~-L-Pfpd~sFDlV~~~~~l~h 294 (544)
.+|||+|||+|.++..+++. + ++++|+++ .+++.+.++++ .+..+|... + ++++++||+|+|+.+++|
T Consensus 15 ~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~-----~~i~~a~~~~~--~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~ 87 (194)
T TIGR02081 15 SRVLDLGCGDGELLALLRDEKQVRGYGIEIDQ-----DGVLACVARGV--NVIQGDLDEGLEAFPDKSFDYVILSQTLQA 87 (194)
T ss_pred CEEEEeCCCCCHHHHHHHhccCCcEEEEeCCH-----HHHHHHHHcCC--eEEEEEhhhcccccCCCCcCEEEEhhHhHc
Confidence 38999999999999988764 3 45566644 44455555553 455566644 4 477889999999999977
Q ss_pred cccChHHHHHHHHHcccCCcEEEEEeCCCC-cc-------c--------cccCCCcchhhhHhhhhhHHHHHHhhcceee
Q 009069 295 WGQYDGLYLIEVDRVLRPGGYWILSGPPVN-WE-------S--------HWKGWNRTTEDLKSEQNGIETIARSLCWKKL 358 (544)
Q Consensus 295 ~~~d~~~~L~Ei~RVLKPGG~Lvis~pp~~-w~-------~--------~~~~w~~t~e~L~~~~~~ie~la~~l~w~~v 358 (544)
.. ++..+++++.|++++ .+++.|... |. . ....|......-....+++.++.+..+++.+
T Consensus 88 ~~-d~~~~l~e~~r~~~~---~ii~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ll~~~Gf~v~ 163 (194)
T TIGR02081 88 TR-NPEEILDEMLRVGRH---AIVSFPNFGYWRVRWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDLCGELNLRIL 163 (194)
T ss_pred Cc-CHHHHHHHHHHhCCe---EEEEcCChhHHHHHHHHHhCCccccCCCCCccccCCCCcccCcHHHHHHHHHHCCCEEE
Confidence 65 588999999887664 444433211 10 0 0001222111112235667788888888776
Q ss_pred ee
Q 009069 359 IQ 360 (544)
Q Consensus 359 ~~ 360 (544)
..
T Consensus 164 ~~ 165 (194)
T TIGR02081 164 DR 165 (194)
T ss_pred EE
Confidence 54
No 87
>PRK14967 putative methyltransferase; Provisional
Probab=98.91 E-value=1.7e-08 Score=99.88 Aligned_cols=100 Identities=21% Similarity=0.224 Sum_probs=70.9
Q ss_pred CEEEEeCCCCcHHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEecccccccc
Q 009069 220 RTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWG 296 (544)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~---~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~sFDlV~~~~~l~h~~ 296 (544)
.+|||+|||+|.++..+++. .++++|+++.++..++.+ +...+..+.+...|... .+++++||+|+++.-+++-.
T Consensus 38 ~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n-~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~~~~ 115 (223)
T PRK14967 38 RRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLN-ALLAGVDVDVRRGDWAR-AVEFRPFDVVVSNPPYVPAP 115 (223)
T ss_pred CeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHH-HHHhCCeeEEEECchhh-hccCCCeeEEEECCCCCCCC
Confidence 48999999999999988875 467888887666544433 33345566676666644 34677999999986443221
Q ss_pred cC--------------------hHHHHHHHHHcccCCcEEEEEeC
Q 009069 297 QY--------------------DGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 297 ~d--------------------~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
.. ...++.++.++|||||.+++...
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~ 160 (223)
T PRK14967 116 PDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQS 160 (223)
T ss_pred cccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 10 14578889999999999998754
No 88
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.91 E-value=2.2e-09 Score=105.41 Aligned_cols=144 Identities=18% Similarity=0.259 Sum_probs=98.9
Q ss_pred HHHHhc-ccCCCCCEEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccc-cCC-CCCCC
Q 009069 208 IGKLIN-LKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGVPALIGVMASI-RLP-YPSRA 282 (544)
Q Consensus 208 L~~lL~-l~~g~~r~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~-~LP-fpd~s 282 (544)
+.+++. ...+.-+++||+|||||..+..|..+ .++++|| +++|++.|.++++--.+.+++.. -++ ..+..
T Consensus 114 l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~a~~ltGvDi-----S~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er 188 (287)
T COG4976 114 LAEMIGKADLGPFRRMLDLGCGTGLTGEALRDMADRLTGVDI-----SENMLAKAHEKGLYDTLYVAEAVLFLEDLTQER 188 (287)
T ss_pred HHHHHHhccCCccceeeecccCcCcccHhHHHHHhhccCCch-----hHHHHHHHHhccchHHHHHHHHHHHhhhccCCc
Confidence 344443 23344679999999999999999876 5555555 67777888888876566666544 233 45678
Q ss_pred eeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeC--CCCccccccCCCcchhhhHhhhhhHHHHHHhhcceeeee
Q 009069 283 FDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP--PVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQ 360 (544)
Q Consensus 283 FDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p--p~~w~~~~~~w~~t~e~L~~~~~~ie~la~~l~w~~v~~ 360 (544)
||+|.+..++ .+..+.+.++.-+...|+|||.|.+|.- +..|... ..+...+......+....+..+++.+..
T Consensus 189 ~DLi~AaDVl-~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~----l~ps~RyAH~~~YVr~~l~~~Gl~~i~~ 263 (287)
T COG4976 189 FDLIVAADVL-PYLGALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFV----LGPSQRYAHSESYVRALLAASGLEVIAI 263 (287)
T ss_pred ccchhhhhHH-HhhcchhhHHHHHHHhcCCCceEEEEecccCCCCCee----cchhhhhccchHHHHHHHHhcCceEEEe
Confidence 9999999999 4444579999999999999999999852 2222111 1122222233456778888888887764
Q ss_pred e
Q 009069 361 K 361 (544)
Q Consensus 361 ~ 361 (544)
.
T Consensus 264 ~ 264 (287)
T COG4976 264 E 264 (287)
T ss_pred e
Confidence 3
No 89
>PRK14968 putative methyltransferase; Provisional
Probab=98.91 E-value=3.6e-08 Score=93.53 Aligned_cols=101 Identities=18% Similarity=0.246 Sum_probs=70.4
Q ss_pred CCEEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCC---eEEEEeccccCCCCCCCeeEEEeccccc
Q 009069 219 IRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGVP---ALIGVMASIRLPYPSRAFDMAHCSRCLI 293 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~A~ergv~---~~~~v~d~~~LPfpd~sFDlV~~~~~l~ 293 (544)
+.+|||+|||+|.++..++++ .++++|+++.++..++.+. ...+.. +.+...|... ++.+++||+|+++..+.
T Consensus 24 ~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~-~~~~~~~~~~~~~~~d~~~-~~~~~~~d~vi~n~p~~ 101 (188)
T PRK14968 24 GDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNA-KLNNIRNNGVEVIRSDLFE-PFRGDKFDVILFNPPYL 101 (188)
T ss_pred CCEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHHH-HHcCCCCcceEEEeccccc-cccccCceEEEECCCcC
Confidence 348999999999999999876 6777888776665444333 233332 5666666544 44566899999876543
Q ss_pred cccc--------------------ChHHHHHHHHHcccCCcEEEEEeC
Q 009069 294 PWGQ--------------------YDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 294 h~~~--------------------d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
+..+ ....+++++.++|||||.+++..+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~ 149 (188)
T PRK14968 102 PTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQS 149 (188)
T ss_pred CCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEc
Confidence 3110 014579999999999999998765
No 90
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=98.87 E-value=4e-09 Score=92.66 Aligned_cols=101 Identities=23% Similarity=0.381 Sum_probs=71.2
Q ss_pred CEEEEeCCCCcHHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcC--CCeEEEEeccccCC--CCCCCeeEEEecccc
Q 009069 220 RTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERG--VPALIGVMASIRLP--YPSRAFDMAHCSRCL 292 (544)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~---~V~~vdisp~dls~a~v~~A~erg--v~~~~~v~d~~~LP--fpd~sFDlV~~~~~l 292 (544)
.+|||+|||+|.++..+++. .++++|+++..+.-+...+.. .+ .++.+.++|..... +++++||+|+++.-+
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~-~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPR-NGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHH-CTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred CEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHH-ccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 47999999999999998876 467777766544333332222 22 25788888877765 788999999998866
Q ss_pred cccccC-------hHHHHHHHHHcccCCcEEEEEeC
Q 009069 293 IPWGQY-------DGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 293 ~h~~~d-------~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
...... ...+++++.++|||||.+++..+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 81 GPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp TSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 543211 15789999999999999998754
No 91
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.87 E-value=2.3e-08 Score=99.55 Aligned_cols=103 Identities=16% Similarity=0.083 Sum_probs=79.2
Q ss_pred CCEEEEeCCCCcHHHHHHhhCC--cEEEeCCccchHHHHHHH------------HHHcCCCeEEEEeccccCCCC---CC
Q 009069 219 IRTAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQF------------ALERGVPALIGVMASIRLPYP---SR 281 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~--V~~vdisp~dls~a~v~~------------A~ergv~~~~~v~d~~~LPfp---d~ 281 (544)
+.+||+.|||.|..+.+|+++| |+++|+|+..+.....+. ...++..+.+.++|...++.. -+
T Consensus 44 ~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~~~ 123 (226)
T PRK13256 44 SSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANNLP 123 (226)
T ss_pred CCeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccccccC
Confidence 3489999999999999999985 666677665554332210 012345788899998888642 26
Q ss_pred CeeEEEecccccccccCh-HHHHHHHHHcccCCcEEEEEeC
Q 009069 282 AFDMAHCSRCLIPWGQYD-GLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 282 sFDlV~~~~~l~h~~~d~-~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
.||+|+-..++++++++. ..+.+.+.++|+|||.+++...
T Consensus 124 ~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~ 164 (226)
T PRK13256 124 VFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVM 164 (226)
T ss_pred CcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEE
Confidence 899999999999998766 7899999999999999988753
No 92
>PTZ00146 fibrillarin; Provisional
Probab=98.87 E-value=2.2e-08 Score=102.83 Aligned_cols=99 Identities=15% Similarity=0.168 Sum_probs=70.5
Q ss_pred ccCCCCCEEEEeCCCCcHHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEecccc---CCCCCCCeeE
Q 009069 214 LKDGSIRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIR---LPYPSRAFDM 285 (544)
Q Consensus 214 l~~g~~r~VLDIGCGtG~~a~~La~~-----~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~---LPfpd~sFDl 285 (544)
+.++ .+|||+|||+|.++..+++. .|.++|+++.+. +.+++.+.++ .++.+.+.|+.. +.....+||+
T Consensus 130 IkpG--~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~-~dLl~~ak~r-~NI~~I~~Da~~p~~y~~~~~~vDv 205 (293)
T PTZ00146 130 IKPG--SKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSG-RDLTNMAKKR-PNIVPIIEDARYPQKYRMLVPMVDV 205 (293)
T ss_pred cCCC--CEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHH-HHHHHHhhhc-CCCEEEECCccChhhhhcccCCCCE
Confidence 4444 48999999999999999886 389999986543 3455555544 355666667542 2223458999
Q ss_pred EEecccccccccChHHHHHHHHHcccCCcEEEEE
Q 009069 286 AHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILS 319 (544)
Q Consensus 286 V~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis 319 (544)
|++..+ .+++...++.++.++|||||+|+|.
T Consensus 206 V~~Dva---~pdq~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 206 IFADVA---QPDQARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred EEEeCC---CcchHHHHHHHHHHhccCCCEEEEE
Confidence 999764 1333356778999999999999996
No 93
>PLN03075 nicotianamine synthase; Provisional
Probab=98.87 E-value=1.3e-08 Score=104.85 Aligned_cols=102 Identities=9% Similarity=0.173 Sum_probs=75.6
Q ss_pred CCCEEEEeCCCCcHHHHHHhh--C----CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEeccccCCCCCCCeeEEEec
Q 009069 218 SIRTAIDTGCGVASWGAYLMS--R----NILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIRLPYPSRAFDMAHCS 289 (544)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~--~----~V~~vdisp~dls~a~v~~A~ergv--~~~~~v~d~~~LPfpd~sFDlV~~~ 289 (544)
..++|||||||.|.++..++. . .++++|+++..+..+...+....++ .+.|..+|+...+-..+.||+|+|.
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~ 202 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA 202 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe
Confidence 345899999998855444332 2 3788898887666555444332343 4888888877654345789999998
Q ss_pred ccccccc-cChHHHHHHHHHcccCCcEEEEEe
Q 009069 290 RCLIPWG-QYDGLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 290 ~~l~h~~-~d~~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
++++|. .+...++..+.+.|+|||+|++..
T Consensus 203 -ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 203 -ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred -cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 898885 556999999999999999999985
No 94
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.84 E-value=1.6e-08 Score=83.75 Aligned_cols=99 Identities=23% Similarity=0.283 Sum_probs=70.6
Q ss_pred EEEEeCCCCcHHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCC-CCCCeeEEEecccccccc
Q 009069 221 TAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPY-PSRAFDMAHCSRCLIPWG 296 (544)
Q Consensus 221 ~VLDIGCGtG~~a~~La~~---~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPf-pd~sFDlV~~~~~l~h~~ 296 (544)
++||+|||.|.++..+++. .+.++|+++......+............+...+...... ..++||+|++..+++++.
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~ 80 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHLV 80 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeehh
Confidence 4899999999999988872 577777766444333211111112346666666655543 567899999999886644
Q ss_pred cChHHHHHHHHHcccCCcEEEEE
Q 009069 297 QYDGLYLIEVDRVLRPGGYWILS 319 (544)
Q Consensus 297 ~d~~~~L~Ei~RVLKPGG~Lvis 319 (544)
.....++..+.+.|+|||.+++.
T Consensus 81 ~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 81 EDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred hHHHHHHHHHHHHcCCCCEEEEE
Confidence 45689999999999999999886
No 95
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.84 E-value=3e-08 Score=102.65 Aligned_cols=103 Identities=12% Similarity=0.124 Sum_probs=72.2
Q ss_pred CCEEEEeCCCCcHHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHc-CCCeEEEEecccc-CCCCCC----CeeEEE
Q 009069 219 IRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALER-GVPALIGVMASIR-LPYPSR----AFDMAH 287 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~-----~V~~vdisp~dls~a~v~~A~er-gv~~~~~v~d~~~-LPfpd~----sFDlV~ 287 (544)
+.+|||+|||+|..+..|+++ .++++|+++.++..++.++.... ++++...++|... ++++.. ...+++
T Consensus 64 ~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~~ 143 (301)
T TIGR03438 64 GCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGFF 143 (301)
T ss_pred CCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEEE
Confidence 348999999999999888765 47888888877776665544322 3456667778654 344433 234455
Q ss_pred ecccccccccCh-HHHHHHHHHcccCCcEEEEEeC
Q 009069 288 CSRCLIPWGQYD-GLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 288 ~~~~l~h~~~d~-~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
+...+.++..+. ..+|+++.++|+|||.|+|...
T Consensus 144 ~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d 178 (301)
T TIGR03438 144 PGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVD 178 (301)
T ss_pred ecccccCCCHHHHHHHHHHHHHhcCCCCEEEEecc
Confidence 555665555422 6799999999999999999754
No 96
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.83 E-value=9.4e-08 Score=96.69 Aligned_cols=116 Identities=20% Similarity=0.243 Sum_probs=74.8
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCC
Q 009069 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLP 277 (544)
Q Consensus 202 ~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LP 277 (544)
+.+++.+.+.+.... ..+|||+|||+|.++..++.. .++++|+++..+..++.........++.+...|... +
T Consensus 94 e~l~~~~~~~~~~~~--~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~-~ 170 (275)
T PRK09328 94 EELVEWALEALLLKE--PLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFE-P 170 (275)
T ss_pred HHHHHHHHHhccccC--CCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccC-c
Confidence 444444443333222 348999999999999999865 478888877666544443331122356777776533 3
Q ss_pred CCCCCeeEEEeccccccccc---------------------C----hHHHHHHHHHcccCCcEEEEEe
Q 009069 278 YPSRAFDMAHCSRCLIPWGQ---------------------Y----DGLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 278 fpd~sFDlV~~~~~l~h~~~---------------------d----~~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
+++++||+|+++.-+..... + ...++.++.++|+|||++++..
T Consensus 171 ~~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~ 238 (275)
T PRK09328 171 LPGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI 238 (275)
T ss_pred CCCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 34678999999653321100 0 1457788889999999999974
No 97
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.83 E-value=8.1e-08 Score=103.14 Aligned_cols=125 Identities=13% Similarity=0.109 Sum_probs=84.3
Q ss_pred CEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCC-CCCeeEEEecccccc
Q 009069 220 RTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYP-SRAFDMAHCSRCLIP 294 (544)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfp-d~sFDlV~~~~~l~h 294 (544)
.+|||+|||+|.++..++.+ .++++|+++.++..++.+. ...+.++.+..+|.....++ .++||+|+|+.-.+.
T Consensus 253 ~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa-~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI~ 331 (423)
T PRK14966 253 GRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNA-ADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPYIE 331 (423)
T ss_pred CEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-HHcCCcEEEEEcchhccccccCCCccEEEECCCCCC
Confidence 38999999999999888753 5788999887776555443 34456778888876543332 457999999774422
Q ss_pred ccc--------------------Ch----HHHHHHHHHcccCCcEEEEEeCCCCccccccCCCcchhhhHhhhhhHHHHH
Q 009069 295 WGQ--------------------YD----GLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIA 350 (544)
Q Consensus 295 ~~~--------------------d~----~~~L~Ei~RVLKPGG~Lvis~pp~~w~~~~~~w~~t~e~L~~~~~~ie~la 350 (544)
-.+ +. ..++.++.+.|+|||.+++..... ..+.+++++
T Consensus 332 ~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~~------------------Q~e~V~~ll 393 (423)
T PRK14966 332 NGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFD------------------QGAAVRGVL 393 (423)
T ss_pred cchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECcc------------------HHHHHHHHH
Confidence 110 11 256677788999999999875411 123466677
Q ss_pred Hhhcceeeeeecc
Q 009069 351 RSLCWKKLIQKKD 363 (544)
Q Consensus 351 ~~l~w~~v~~~~~ 363 (544)
+..+|..+....|
T Consensus 394 ~~~Gf~~v~v~kD 406 (423)
T PRK14966 394 AENGFSGVETLPD 406 (423)
T ss_pred HHCCCcEEEEEEc
Confidence 7778876554333
No 98
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=98.82 E-value=7.6e-08 Score=93.45 Aligned_cols=98 Identities=13% Similarity=0.077 Sum_probs=69.7
Q ss_pred CCEEEEeCCCCcHHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcC--CCeEEEEecccc-CCCCCCCeeEEEecc
Q 009069 219 IRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERG--VPALIGVMASIR-LPYPSRAFDMAHCSR 290 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~-----~V~~vdisp~dls~a~v~~A~erg--v~~~~~v~d~~~-LPfpd~sFDlV~~~~ 290 (544)
+.+|||+|||+|.++..++.. .++++|+++.++..++.+. ...+ .++.+..+|... ++..++.||.|++..
T Consensus 41 ~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~-~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~~ 119 (198)
T PRK00377 41 GDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNA-EKFGVLNNIVLIKGEAPEILFTINEKFDRIFIGG 119 (198)
T ss_pred cCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-HHhCCCCCeEEEEechhhhHhhcCCCCCEEEECC
Confidence 348999999999998877542 4788899887665444333 3344 246666667654 333346899999854
Q ss_pred cccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 291 CLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 291 ~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
. ..+...++.++.++|||||++++...
T Consensus 120 ~----~~~~~~~l~~~~~~LkpgG~lv~~~~ 146 (198)
T PRK00377 120 G----SEKLKEIISASWEIIKKGGRIVIDAI 146 (198)
T ss_pred C----cccHHHHHHHHHHHcCCCcEEEEEee
Confidence 2 22357899999999999999998643
No 99
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.82 E-value=1.2e-08 Score=101.08 Aligned_cols=93 Identities=18% Similarity=0.242 Sum_probs=66.6
Q ss_pred CEEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCCeEEEEe-----ccccCCC--CCCCeeEEEecc
Q 009069 220 RTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGVPALIGVM-----ASIRLPY--PSRAFDMAHCSR 290 (544)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~A~ergv~~~~~v~-----d~~~LPf--pd~sFDlV~~~~ 290 (544)
+.++|+|||+|..+..+++. .|+++|+++ +|+++|.+.. ++.+... +.+..++ .+++.|+|+|..
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~~k~VIatD~s~-----~mL~~a~k~~-~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aq 108 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEHYKEVIATDVSE-----AMLKVAKKHP-PVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQ 108 (261)
T ss_pred ceEEEeccCCCcchHHHHHhhhhheeecCCH-----HHHHHhhcCC-CcccccCCccccccccccccCCCcceeeehhhh
Confidence 37999999999767777775 788888854 5556665442 3222211 2222333 489999999999
Q ss_pred cccccccChHHHHHHHHHcccCCc-EEEEEe
Q 009069 291 CLIPWGQYDGLYLIEVDRVLRPGG-YWILSG 320 (544)
Q Consensus 291 ~l~h~~~d~~~~L~Ei~RVLKPGG-~Lvis~ 320 (544)
|+ ||.+ .+.+++++.|+||+.| .+++-.
T Consensus 109 a~-HWFd-le~fy~~~~rvLRk~Gg~iavW~ 137 (261)
T KOG3010|consen 109 AV-HWFD-LERFYKEAYRVLRKDGGLIAVWN 137 (261)
T ss_pred hH-Hhhc-hHHHHHHHHHHcCCCCCEEEEEE
Confidence 99 8996 6999999999999877 555543
No 100
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=98.81 E-value=6e-08 Score=92.44 Aligned_cols=100 Identities=18% Similarity=0.263 Sum_probs=76.0
Q ss_pred EEEEeCCCCcHHHHHHhhCC----cEEEeCCccchHHHHHHHHHHcCCC--eEEEEeccccCCCCCCCeeEEEecccccc
Q 009069 221 TAIDTGCGVASWGAYLMSRN----ILAVSFAPRDTHEAQVQFALERGVP--ALIGVMASIRLPYPSRAFDMAHCSRCLIP 294 (544)
Q Consensus 221 ~VLDIGCGtG~~a~~La~~~----V~~vdisp~dls~a~v~~A~ergv~--~~~~v~d~~~LPfpd~sFDlV~~~~~l~h 294 (544)
+|||+|||.|.+...|++.+ .+++|.++..+.- +..+|..++.+ +.|.++|+..-.+..+.||+|+--..+..
T Consensus 70 ~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~L-A~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~DA 148 (227)
T KOG1271|consen 70 RVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVEL-AQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLDA 148 (227)
T ss_pred ceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHH-HHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCceee
Confidence 79999999999999999874 5667776665543 33456666765 88999998887888899999996444322
Q ss_pred c--c-c----ChHHHHHHHHHcccCCcEEEEEeC
Q 009069 295 W--G-Q----YDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 295 ~--~-~----d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
. . + .+..++..+.++|+|||.|+|..-
T Consensus 149 isLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSC 182 (227)
T KOG1271|consen 149 ISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSC 182 (227)
T ss_pred eecCCCCcccceeeehhhHhhccCCCcEEEEEec
Confidence 1 1 1 114689999999999999999864
No 101
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=98.81 E-value=5.3e-08 Score=97.82 Aligned_cols=144 Identities=19% Similarity=0.202 Sum_probs=96.7
Q ss_pred CCCCcccHHHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcC-CCeEE
Q 009069 194 GTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERG-VPALI 268 (544)
Q Consensus 194 g~~F~~ga~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~erg-v~~~~ 268 (544)
...|..+.+.. .|..+..... ..+|||+|||+|..+..++++ .+.++++.+.+...++...+.... ..+.+
T Consensus 24 ~~~~~~~~Dai--LL~~~~~~~~--~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v 99 (248)
T COG4123 24 RCGFRYGTDAI--LLAAFAPVPK--KGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQV 99 (248)
T ss_pred CCccccccHHH--HHHhhccccc--CCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeE
Confidence 34455566666 3566655443 458999999999999999987 577888877666555555544221 24677
Q ss_pred EEeccccCC--CCCCCeeEEEecccccccccC-----------------hHHHHHHHHHcccCCcEEEEEeCCCCccccc
Q 009069 269 GVMASIRLP--YPSRAFDMAHCSRCLIPWGQY-----------------DGLYLIEVDRVLRPGGYWILSGPPVNWESHW 329 (544)
Q Consensus 269 ~v~d~~~LP--fpd~sFDlV~~~~~l~h~~~d-----------------~~~~L~Ei~RVLKPGG~Lvis~pp~~w~~~~ 329 (544)
..+|..... ..-.+||+|+|+.-+..-... .+.+++.+.++|||||+|.++.++..
T Consensus 100 ~~~Di~~~~~~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~er----- 174 (248)
T COG4123 100 IEADIKEFLKALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPER----- 174 (248)
T ss_pred ehhhHHHhhhcccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHHH-----
Confidence 777766554 334579999998755433322 14788889999999999999976422
Q ss_pred cCCCcchhhhHhhhhhHHHHHHhhcceeee
Q 009069 330 KGWNRTTEDLKSEQNGIETIARSLCWKKLI 359 (544)
Q Consensus 330 ~~w~~t~e~L~~~~~~ie~la~~l~w~~v~ 359 (544)
..++-+++++..|....
T Consensus 175 -------------l~ei~~~l~~~~~~~k~ 191 (248)
T COG4123 175 -------------LAEIIELLKSYNLEPKR 191 (248)
T ss_pred -------------HHHHHHHHHhcCCCceE
Confidence 22355667776665443
No 102
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.79 E-value=5.1e-08 Score=95.43 Aligned_cols=108 Identities=16% Similarity=0.145 Sum_probs=72.9
Q ss_pred HHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEeccccCCCCC
Q 009069 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRLPYPS 280 (544)
Q Consensus 204 ~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~A~ergv-~~~~~v~d~~~LPfpd 280 (544)
....+.+.+....+. +|||+|||+|.++..|++. .++++|+++..+..+...+.. .+. ++.+..+|........
T Consensus 66 ~~~~l~~~l~~~~~~--~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~~-~~~~~v~~~~~d~~~~~~~~ 142 (212)
T PRK00312 66 MVARMTELLELKPGD--RVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQ-LGLHNVSVRHGDGWKGWPAY 142 (212)
T ss_pred HHHHHHHhcCCCCCC--EEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHHH-CCCCceEEEECCcccCCCcC
Confidence 334555566555444 8999999999998877765 578888876555444433332 233 4677777654322234
Q ss_pred CCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 281 RAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 281 ~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
+.||+|++..++.+ +..++.+.|+|||.+++...
T Consensus 143 ~~fD~I~~~~~~~~-------~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 143 APFDRILVTAAAPE-------IPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred CCcCEEEEccCchh-------hhHHHHHhcCCCcEEEEEEc
Confidence 78999999775533 34567899999999999754
No 103
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.77 E-value=8.5e-08 Score=96.42 Aligned_cols=150 Identities=22% Similarity=0.248 Sum_probs=95.1
Q ss_pred cCCCCCCCcccHHHHHHHHHHHhccc-----C-CCCCEEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHHHHH
Q 009069 190 FPGGGTMFPRGADAYIDDIGKLINLK-----D-GSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALE 261 (544)
Q Consensus 190 F~g~g~~F~~ga~~~i~~L~~lL~l~-----~-g~~r~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~A~e 261 (544)
+.|.|.||--..+.+. +++... + ....++||||+|.|..+..|+.. .|.++++|+.| +..-.+
T Consensus 64 ~LgRG~MFvfS~~Q~~----~LL~~~~~~~~~~~~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~M-----r~rL~~ 134 (265)
T PF05219_consen 64 ILGRGSMFVFSEEQFR----KLLRISGFSWNPDWKDKSLLDLGAGDGEVTERLAPLFKEVYATEASPPM-----RWRLSK 134 (265)
T ss_pred hhcCCcEEEecHHHHH----HHhhhhccCCCCcccCCceEEecCCCcHHHHHHHhhcceEEeecCCHHH-----HHHHHh
Confidence 4556666655555443 333322 1 13457999999999999999885 78888886654 444556
Q ss_pred cCCCeEEEEeccccCCCCCCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEe--CCCCcccc-ccCCCcchhh
Q 009069 262 RGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG--PPVNWESH-WKGWNRTTED 338 (544)
Q Consensus 262 rgv~~~~~v~d~~~LPfpd~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~--pp~~w~~~-~~~w~~t~e~ 338 (544)
+|..+. +.....-.+..||+|.|..++ .-.++|..+|+++.+.|+|+|.+++.. |-..+... ...+.++.|.
T Consensus 135 kg~~vl----~~~~w~~~~~~fDvIscLNvL-DRc~~P~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e~ 209 (265)
T PF05219_consen 135 KGFTVL----DIDDWQQTDFKFDVISCLNVL-DRCDRPLTLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSEL 209 (265)
T ss_pred CCCeEE----ehhhhhccCCceEEEeehhhh-hccCCHHHHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchhh
Confidence 775432 333333345689999999988 455568999999999999999999973 32222222 1234555555
Q ss_pred hHhhhhhHHHHHHhh
Q 009069 339 LKSEQNGIETIARSL 353 (544)
Q Consensus 339 L~~~~~~ie~la~~l 353 (544)
+.-....+|+.+.++
T Consensus 210 l~~~g~~~E~~v~~l 224 (265)
T PF05219_consen 210 LPVKGATFEEQVSSL 224 (265)
T ss_pred cCCCCCcHHHHHHHH
Confidence 544334444444444
No 104
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.74 E-value=8.9e-08 Score=93.51 Aligned_cols=133 Identities=18% Similarity=0.256 Sum_probs=78.4
Q ss_pred HHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC-CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCee
Q 009069 206 DDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFD 284 (544)
Q Consensus 206 ~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~sFD 284 (544)
+.+.+.+...+ ....|-|+|||.+.++..+... .|+..|+... +-.+..+|...+|+++++.|
T Consensus 61 d~iI~~l~~~~-~~~viaD~GCGdA~la~~~~~~~~V~SfDLva~---------------n~~Vtacdia~vPL~~~svD 124 (219)
T PF05148_consen 61 DVIIEWLKKRP-KSLVIADFGCGDAKLAKAVPNKHKVHSFDLVAP---------------NPRVTACDIANVPLEDESVD 124 (219)
T ss_dssp HHHHHHHCTS--TTS-EEEES-TT-HHHHH--S---EEEEESS-S---------------STTEEES-TTS-S--TT-EE
T ss_pred HHHHHHHHhcC-CCEEEEECCCchHHHHHhcccCceEEEeeccCC---------------CCCEEEecCccCcCCCCcee
Confidence 55566665333 2347999999999999877533 5666666221 11356789999999999999
Q ss_pred EEEecccccccccChHHHHHHHHHcccCCcEEEEEeCCCCccccccCCCcchhhhHhhhhhHHHHHHhhcceeeeeecc-
Q 009069 285 MAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQKKD- 363 (544)
Q Consensus 285 lV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~pp~~w~~~~~~w~~t~e~L~~~~~~ie~la~~l~w~~v~~~~~- 363 (544)
+|++..+| ...+-..++.|+.|+|||||.|+|..--.. + +. .+......+++||+...+...
T Consensus 125 v~VfcLSL--MGTn~~~fi~EA~RvLK~~G~L~IAEV~SR----f-------~~----~~~F~~~~~~~GF~~~~~d~~n 187 (219)
T PF05148_consen 125 VAVFCLSL--MGTNWPDFIREANRVLKPGGILKIAEVKSR----F-------EN----VKQFIKALKKLGFKLKSKDESN 187 (219)
T ss_dssp EEEEES-----SS-HHHHHHHHHHHEEEEEEEEEEEEGGG------------S-----HHHHHHHHHCTTEEEEEEE--S
T ss_pred EEEEEhhh--hCCCcHHHHHHHHheeccCcEEEEEEeccc----C-------cC----HHHHHHHHHHCCCeEEecccCC
Confidence 99987766 334458999999999999999999854111 1 11 233556788899988875332
Q ss_pred ----EEEEeccC
Q 009069 364 ----LAIWQKPT 371 (544)
Q Consensus 364 ----~aIwqKP~ 371 (544)
+..++|..
T Consensus 188 ~~F~~f~F~K~~ 199 (219)
T PF05148_consen 188 KHFVLFEFKKIR 199 (219)
T ss_dssp TTEEEEEEEE-S
T ss_pred CeEEEEEEEEcC
Confidence 35556654
No 105
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.74 E-value=1.2e-07 Score=91.84 Aligned_cols=108 Identities=16% Similarity=0.072 Sum_probs=72.2
Q ss_pred HHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEecccc-CCCC
Q 009069 206 DDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIR-LPYP 279 (544)
Q Consensus 206 ~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv-~~~~~v~d~~~-LPfp 279 (544)
..+.+.+....+ .+|||+|||+|.++..+++. .++++|+++.++..++.+.. +.+. ++.+..+|+.. ++..
T Consensus 30 ~~l~~~l~~~~~--~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~-~~~~~~v~~~~~d~~~~~~~~ 106 (196)
T PRK07402 30 LLLISQLRLEPD--SVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCD-RFGVKNVEVIEGSAPECLAQL 106 (196)
T ss_pred HHHHHhcCCCCC--CEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHH-HhCCCCeEEEECchHHHHhhC
Confidence 345556554443 48999999999999888753 58889998877765554433 3333 46666666543 2222
Q ss_pred CCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 280 SRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 280 d~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
...+|.++... ......++.++.++|+|||+|++..+
T Consensus 107 ~~~~d~v~~~~-----~~~~~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 107 APAPDRVCIEG-----GRPIKEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred CCCCCEEEEEC-----CcCHHHHHHHHHHhcCCCeEEEEEee
Confidence 23457665421 22347899999999999999999865
No 106
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=98.73 E-value=2.9e-07 Score=94.51 Aligned_cols=100 Identities=15% Similarity=0.147 Sum_probs=69.8
Q ss_pred CEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCC--eEEEEeccccCCCCCCCeeEEEeccccc
Q 009069 220 RTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGVP--ALIGVMASIRLPYPSRAFDMAHCSRCLI 293 (544)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv~--~~~~v~d~~~LPfpd~sFDlV~~~~~l~ 293 (544)
.+|||+|||+|.++..++.. .++++|+++..+..+..+ +...+.. +.+..+|... ++++++||+|+++.-.+
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n-~~~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPyi 193 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEEN-AEKNQLEHRVEFIQSNLFE-PLAGQKIDIIVSNPPYI 193 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHH-HHHcCCCCcEEEEECchhc-cCcCCCccEEEECCCCC
Confidence 47999999999999999864 588888887666544443 3333443 6777777543 44555899999963221
Q ss_pred cc-------------c-------c----ChHHHHHHHHHcccCCcEEEEEeC
Q 009069 294 PW-------------G-------Q----YDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 294 h~-------------~-------~----d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
.- + . ....++.++.++|+|||+|++...
T Consensus 194 ~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g 245 (284)
T TIGR00536 194 DEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIG 245 (284)
T ss_pred CcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEEC
Confidence 11 0 0 114678889999999999999865
No 107
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.72 E-value=1.3e-07 Score=91.04 Aligned_cols=92 Identities=16% Similarity=0.156 Sum_probs=64.4
Q ss_pred CCEEEEeCCCCcHHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCC--------CCCCCeeE
Q 009069 219 IRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLP--------YPSRAFDM 285 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~-----~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LP--------fpd~sFDl 285 (544)
+.+|||+|||+|.++..++++ .++++|+++.. ....+.+..+|....+ +++++||+
T Consensus 33 g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~ 101 (188)
T TIGR00438 33 GDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PIENVDFIRGDFTDEEVLNKIRERVGDDKVDV 101 (188)
T ss_pred CCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cCCCceEEEeeCCChhHHHHHHHHhCCCCccE
Confidence 348999999999998888764 38888987732 1123456666655432 45678999
Q ss_pred EEeccccc---ccccC-------hHHHHHHHHHcccCCcEEEEEeC
Q 009069 286 AHCSRCLI---PWGQY-------DGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 286 V~~~~~l~---h~~~d-------~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
|++..+.+ +|..+ ...++.++.++|+|||.+++...
T Consensus 102 V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~ 147 (188)
T TIGR00438 102 VMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVF 147 (188)
T ss_pred EEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEc
Confidence 99865421 11111 15789999999999999999753
No 108
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=98.72 E-value=4.3e-07 Score=93.46 Aligned_cols=100 Identities=14% Similarity=0.158 Sum_probs=70.1
Q ss_pred CEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEeccccCCCCCCCeeEEEeccccc
Q 009069 220 RTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIRLPYPSRAFDMAHCSRCLI 293 (544)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv--~~~~~v~d~~~LPfpd~sFDlV~~~~~l~ 293 (544)
.+|||+|||+|.++..++++ .++++|+++.++..++.+ +...++ .+.+..+|... ++++++||+|+++.-..
T Consensus 123 ~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n-~~~~~~~~~i~~~~~D~~~-~~~~~~fD~Iv~NPPy~ 200 (284)
T TIGR03533 123 KRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEIN-IERHGLEDRVTLIQSDLFA-ALPGRKYDLIVSNPPYV 200 (284)
T ss_pred CEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHH-HHHcCCCCcEEEEECchhh-ccCCCCccEEEECCCCC
Confidence 47999999999999999875 578888887766555543 334454 36777777533 34566899999974221
Q ss_pred c------c----cc----------Ch----HHHHHHHHHcccCCcEEEEEeC
Q 009069 294 P------W----GQ----------YD----GLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 294 h------~----~~----------d~----~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
. . .. +. ..++.++.++|+|||.+++...
T Consensus 201 ~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g 252 (284)
T TIGR03533 201 DAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVG 252 (284)
T ss_pred CccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 1 0 00 01 4678899999999999999864
No 109
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.71 E-value=5.2e-08 Score=96.52 Aligned_cols=120 Identities=18% Similarity=0.317 Sum_probs=82.4
Q ss_pred ccHHHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC------CcEEEeCCccchHHHHHHHHHHcC------CCe
Q 009069 199 RGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR------NILAVSFAPRDTHEAQVQFALERG------VPA 266 (544)
Q Consensus 199 ~ga~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~------~V~~vdisp~dls~a~v~~A~erg------v~~ 266 (544)
....-..++.-+++........+||+||||.|....-+++- .+.+.|++|..+. +..++. ..+
T Consensus 52 kdR~wL~~Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~-----~vk~~~~~~e~~~~a 126 (264)
T KOG2361|consen 52 KDRNWLLREFPELLPVDEKSAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIE-----LVKKSSGYDESRVEA 126 (264)
T ss_pred chhHHHHHhhHHhhCccccChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHH-----HHHhccccchhhhcc
Confidence 33444556777777655544447999999999877777664 3667777765443 333221 122
Q ss_pred EEEEecc--ccCCCCCCCeeEEEecccccccccCh-HHHHHHHHHcccCCcEEEEEeCCC
Q 009069 267 LIGVMAS--IRLPYPSRAFDMAHCSRCLIPWGQYD-GLYLIEVDRVLRPGGYWILSGPPV 323 (544)
Q Consensus 267 ~~~v~d~--~~LPfpd~sFDlV~~~~~l~h~~~d~-~~~L~Ei~RVLKPGG~Lvis~pp~ 323 (544)
.+..++. ..-|...+++|+|++.++|...+++. ..++.++.++|||||.+++.+...
T Consensus 127 fv~Dlt~~~~~~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~ 186 (264)
T KOG2361|consen 127 FVWDLTSPSLKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGR 186 (264)
T ss_pred cceeccchhccCCCCcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeeccc
Confidence 2222222 23456789999999999998887655 789999999999999999986533
No 110
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.70 E-value=1.2e-08 Score=100.22 Aligned_cols=142 Identities=11% Similarity=0.154 Sum_probs=85.0
Q ss_pred CCCEEEEeCCCCcHHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEecccccc
Q 009069 218 SIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIP 294 (544)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~---~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~sFDlV~~~~~l~h 294 (544)
...++||.|+|.|+.+..|+-. .|..++..+..+..+...+.........+.....+..-.+.++||+|++..|+-|
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lgh 134 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLGH 134 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GGG
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhcc
Confidence 3568999999999999988765 3445555443333333222111222234455556666545679999999999999
Q ss_pred cccCh-HHHHHHHHHcccCCcEEEEEeCCCCccccccCCCcchhhhHhhhhhHHHHHHhhcceeeeee
Q 009069 295 WGQYD-GLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQK 361 (544)
Q Consensus 295 ~~~d~-~~~L~Ei~RVLKPGG~Lvis~pp~~w~~~~~~w~~t~e~L~~~~~~ie~la~~l~w~~v~~~ 361 (544)
++++. ..+|+.+...|+|||.+++-.+-... ....+......+....+.+..+.++.+++.+.+.
T Consensus 135 LTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~--~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~ 200 (218)
T PF05891_consen 135 LTDEDLVAFLKRCKQALKPNGVIVVKENVSSS--GFDEFDEEDSSVTRSDEHFRELFKQAGLRLVKEE 200 (218)
T ss_dssp S-HHHHHHHHHHHHHHEEEEEEEEEEEEEESS--SEEEEETTTTEEEEEHHHHHHHHHHCT-EEEEEE
T ss_pred CCHHHHHHHHHHHHHhCcCCcEEEEEecCCCC--CCcccCCccCeeecCHHHHHHHHHHcCCEEEEec
Confidence 99866 89999999999999999997542111 0111222233333345667889999999988754
No 111
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.68 E-value=1.5e-07 Score=92.05 Aligned_cols=159 Identities=14% Similarity=0.226 Sum_probs=91.5
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC-----CeEEEEec
Q 009069 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGV-----PALIGVMA 272 (544)
Q Consensus 202 ~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv-----~~~~~v~d 272 (544)
+...+.|.++++.. +.+||+||+|||..+.+++++ .....|++..... .....+.+.+. ++. .|
T Consensus 12 ~pIl~vL~~~l~~~---~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~-sI~a~~~~~~~~Nv~~P~~---lD 84 (204)
T PF06080_consen 12 DPILEVLKQYLPDS---GTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRP-SIRAWIAEAGLPNVRPPLA---LD 84 (204)
T ss_pred hHHHHHHHHHhCcc---CceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHh-hHHHHHHhcCCcccCCCeE---ee
Confidence 33444455554322 125999999999999999886 2333444332211 11112222222 222 23
Q ss_pred cccC--CC------CCCCeeEEEecccccccccCh--HHHHHHHHHcccCCcEEEEEeCCCCccc-------cccCCC--
Q 009069 273 SIRL--PY------PSRAFDMAHCSRCLIPWGQYD--GLYLIEVDRVLRPGGYWILSGPPVNWES-------HWKGWN-- 333 (544)
Q Consensus 273 ~~~L--Pf------pd~sFDlV~~~~~l~h~~~d~--~~~L~Ei~RVLKPGG~Lvis~pp~~w~~-------~~~~w~-- 333 (544)
.... |. ..++||+|+|..++ |+.... +.+|..+.++|+|||.|++-+|-..--. .++.|.
T Consensus 85 v~~~~w~~~~~~~~~~~~~D~i~~~N~l-HI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~ 163 (204)
T PF06080_consen 85 VSAPPWPWELPAPLSPESFDAIFCINML-HISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRS 163 (204)
T ss_pred cCCCCCccccccccCCCCcceeeehhHH-HhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhc
Confidence 3332 22 35689999999988 555433 7899999999999999999887222100 111111
Q ss_pred -cchhhhHhhhhhHHHHHHhhcceeeeee-----ccEEEEec
Q 009069 334 -RTTEDLKSEQNGIETIARSLCWKKLIQK-----KDLAIWQK 369 (544)
Q Consensus 334 -~t~e~L~~~~~~ie~la~~l~w~~v~~~-----~~~aIwqK 369 (544)
++...+++ .++++.++.+.+++..... +.+.||+|
T Consensus 164 rdp~~GiRD-~e~v~~lA~~~GL~l~~~~~MPANN~~Lvfrk 204 (204)
T PF06080_consen 164 RDPEWGIRD-IEDVEALAAAHGLELEEDIDMPANNLLLVFRK 204 (204)
T ss_pred CCCCcCccC-HHHHHHHHHHCCCccCcccccCCCCeEEEEeC
Confidence 11223333 3468889999888765532 23567765
No 112
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.68 E-value=4.6e-08 Score=92.11 Aligned_cols=78 Identities=19% Similarity=0.100 Sum_probs=61.2
Q ss_pred EEeCCccchHHHHHHHHHHc---CCCeEEEEeccccCCCCCCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEE
Q 009069 243 AVSFAPRDTHEAQVQFALER---GVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILS 319 (544)
Q Consensus 243 ~vdisp~dls~a~v~~A~er---gv~~~~~v~d~~~LPfpd~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis 319 (544)
++|+++.|+..++.+..... ..++.+.++|+..+|+++++||+|++..+++++. +...+|+|+.|+|||||.|++.
T Consensus 2 GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~-d~~~~l~ei~rvLkpGG~l~i~ 80 (160)
T PLN02232 2 GLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVV-DRLRAMKEMYRVLKPGSRVSIL 80 (160)
T ss_pred eEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCC-CHHHHHHHHHHHcCcCeEEEEE
Confidence 57787777765543322111 1257899999999999999999999999996664 5899999999999999999987
Q ss_pred eC
Q 009069 320 GP 321 (544)
Q Consensus 320 ~p 321 (544)
+.
T Consensus 81 d~ 82 (160)
T PLN02232 81 DF 82 (160)
T ss_pred EC
Confidence 53
No 113
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.67 E-value=7e-07 Score=90.30 Aligned_cols=118 Identities=18% Similarity=0.251 Sum_probs=74.7
Q ss_pred cHHHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEecccc
Q 009069 200 GADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIR 275 (544)
Q Consensus 200 ga~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~ 275 (544)
..+..++.+...+... ....+|||+|||+|.++..+++. .++++|+++..+..++.+.. ..+ ..+..+|...
T Consensus 69 ~Te~Lv~~~l~~~~~~-~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~-~~~--~~~~~~D~~~ 144 (251)
T TIGR03704 69 RTEFLVDEAAALARPR-SGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLA-DAG--GTVHEGDLYD 144 (251)
T ss_pred cHHHHHHHHHHhhccc-CCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHH-HcC--CEEEEeechh
Confidence 3444555555544321 12347999999999999988764 57888888776655544332 333 3566666543
Q ss_pred -CCC-CCCCeeEEEecccccccc---------------------cCh----HHHHHHHHHcccCCcEEEEEeC
Q 009069 276 -LPY-PSRAFDMAHCSRCLIPWG---------------------QYD----GLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 276 -LPf-pd~sFDlV~~~~~l~h~~---------------------~d~----~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
++- ..++||+|+++.-..... .+. ..++..+.++|+|||.|++...
T Consensus 145 ~l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~ 217 (251)
T TIGR03704 145 ALPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETS 217 (251)
T ss_pred hcchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 221 135799999986433210 011 3677778899999999999864
No 114
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.64 E-value=2.1e-07 Score=93.04 Aligned_cols=131 Identities=19% Similarity=0.268 Sum_probs=89.3
Q ss_pred HHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhh-CCcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCee
Q 009069 206 DDIGKLINLKDGSIRTAIDTGCGVASWGAYLMS-RNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFD 284 (544)
Q Consensus 206 ~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~-~~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~sFD 284 (544)
+.|++.|...++. ..|-|+|||-+.++. .+ ..|+.+|+.+ ++-.+..+|+.++|.+|++.|
T Consensus 169 d~ii~~ik~r~~~-~vIaD~GCGEakiA~--~~~~kV~SfDL~a---------------~~~~V~~cDm~~vPl~d~svD 230 (325)
T KOG3045|consen 169 DVIIRKIKRRPKN-IVIADFGCGEAKIAS--SERHKVHSFDLVA---------------VNERVIACDMRNVPLEDESVD 230 (325)
T ss_pred HHHHHHHHhCcCc-eEEEecccchhhhhh--ccccceeeeeeec---------------CCCceeeccccCCcCccCccc
Confidence 4455555544333 468999999998875 22 3677777733 233556778999999999999
Q ss_pred EEEecccccccccChHHHHHHHHHcccCCcEEEEEeCCCCccccccCCCcchhhhHhhhhhHHHHHHhhcceeeeeecc-
Q 009069 285 MAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQKKD- 363 (544)
Q Consensus 285 lV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~pp~~w~~~~~~w~~t~e~L~~~~~~ie~la~~l~w~~v~~~~~- 363 (544)
++++..+| ...+...++.|+.|+|||||.|+|..--.. ..+ ...+......+||........
T Consensus 231 vaV~CLSL--Mgtn~~df~kEa~RiLk~gG~l~IAEv~SR-----------f~d----v~~f~r~l~~lGF~~~~~d~~n 293 (325)
T KOG3045|consen 231 VAVFCLSL--MGTNLADFIKEANRILKPGGLLYIAEVKSR-----------FSD----VKGFVRALTKLGFDVKHKDVSN 293 (325)
T ss_pred EEEeeHhh--hcccHHHHHHHHHHHhccCceEEEEehhhh-----------ccc----HHHHHHHHHHcCCeeeehhhhc
Confidence 99975544 455568999999999999999999854111 111 122556778899987654332
Q ss_pred ----EEEEeccC
Q 009069 364 ----LAIWQKPT 371 (544)
Q Consensus 364 ----~aIwqKP~ 371 (544)
+.-|+|+-
T Consensus 294 ~~F~lfefkK~~ 305 (325)
T KOG3045|consen 294 KYFTLFEFKKTP 305 (325)
T ss_pred ceEEEEEEecCC
Confidence 34566653
No 115
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.64 E-value=2.5e-08 Score=97.96 Aligned_cols=100 Identities=19% Similarity=0.219 Sum_probs=81.3
Q ss_pred CCEEEEeCCCCcHHHHHHhhCC---cEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEeccccccc
Q 009069 219 IRTAIDTGCGVASWGAYLMSRN---ILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPW 295 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~---V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~sFDlV~~~~~l~h~ 295 (544)
...++|||||.|.....|..++ ++.+|.+..|+...+ -+...++.....+.|.+.|+|.+++||+|+++..+ ||
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~--~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlsl-HW 149 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCR--DAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSL-HW 149 (325)
T ss_pred CcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhh--ccCCCceEEEEEecchhcccccccchhhhhhhhhh-hh
Confidence 3479999999999999999885 466777655443221 22234566778889999999999999999999999 99
Q ss_pred ccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 296 GQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 296 ~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
..+....+..+...|||.|.|+-+..
T Consensus 150 ~NdLPg~m~~ck~~lKPDg~Fiasml 175 (325)
T KOG2940|consen 150 TNDLPGSMIQCKLALKPDGLFIASML 175 (325)
T ss_pred hccCchHHHHHHHhcCCCccchhHHh
Confidence 99889999999999999999998743
No 116
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.62 E-value=1.3e-07 Score=99.29 Aligned_cols=104 Identities=23% Similarity=0.342 Sum_probs=72.4
Q ss_pred CCCEEEEeCCCCcHHHHHHhhC---CcEEEeCCccchHHHHHHHHH-H-----c----CCCeEEEEecccc------CCC
Q 009069 218 SIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFAL-E-----R----GVPALIGVMASIR------LPY 278 (544)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~---~V~~vdisp~dls~a~v~~A~-e-----r----gv~~~~~v~d~~~------LPf 278 (544)
.+.+|||+|||-|.-....... .+.++|++...+.++..+... . + ...+.+..+|... ++.
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 4568999999988766666554 578899988877766655521 0 1 1346666666432 222
Q ss_pred CCCCeeEEEecccccccccCh---HHHHHHHHHcccCCcEEEEEeC
Q 009069 279 PSRAFDMAHCSRCLIPWGQYD---GLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 279 pd~sFDlV~~~~~l~h~~~d~---~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
....||+|-|.+++|+..+.. ..+|..+...|||||+|+.+.|
T Consensus 142 ~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~ 187 (331)
T PF03291_consen 142 RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTP 187 (331)
T ss_dssp TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 235999999999998877765 5699999999999999999987
No 117
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.62 E-value=1.1e-07 Score=97.44 Aligned_cols=103 Identities=18% Similarity=0.248 Sum_probs=77.2
Q ss_pred CCEEEEeCCCCcHHHHHHhhC---CcEEEeCCccchHHHHHHHHHHc------CCCeEEEEecc------ccCCCCCCCe
Q 009069 219 IRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALER------GVPALIGVMAS------IRLPYPSRAF 283 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~---~V~~vdisp~dls~a~v~~A~er------gv~~~~~v~d~------~~LPfpd~sF 283 (544)
+..+||+|||-|.-+....+. .++++||+...+.+++.+.-.-+ -.++.|..+|. ..+++++.+|
T Consensus 118 ~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp~f 197 (389)
T KOG1975|consen 118 GDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDPRF 197 (389)
T ss_pred ccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCCCc
Confidence 346999999999887777665 56888998877766665432211 13567777773 3456677779
Q ss_pred eEEEecccccccccCh---HHHHHHHHHcccCCcEEEEEeC
Q 009069 284 DMAHCSRCLIPWGQYD---GLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 284 DlV~~~~~l~h~~~d~---~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
|+|-|.+|+|.-.... ..+|..+.+.|||||+||-+.|
T Consensus 198 DivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiP 238 (389)
T KOG1975|consen 198 DIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIP 238 (389)
T ss_pred ceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecC
Confidence 9999999996655433 5789999999999999999988
No 118
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.62 E-value=2.8e-07 Score=96.47 Aligned_cols=107 Identities=12% Similarity=0.085 Sum_probs=74.1
Q ss_pred HHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEeccccCC
Q 009069 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRLP 277 (544)
Q Consensus 204 ~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-----~V~~vdisp~dls~a~v~~A~ergv-~~~~~v~d~~~LP 277 (544)
....+.+.+....+. +|||||||+|.++..+++. .++++|+++.++..++... ...+. ++.+..+|....+
T Consensus 68 l~a~ll~~L~i~~g~--~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l-~~~g~~nV~~i~gD~~~~~ 144 (322)
T PRK13943 68 LMALFMEWVGLDKGM--RVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNV-RRLGIENVIFVCGDGYYGV 144 (322)
T ss_pred HHHHHHHhcCCCCCC--EEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHH-HHcCCCcEEEEeCChhhcc
Confidence 344555666555444 8999999999999998864 2788888876665444333 33444 4677777766655
Q ss_pred CCCCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEe
Q 009069 278 YPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 278 fpd~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
.....||+|++...+.+ ....+.+.|+|||.+++..
T Consensus 145 ~~~~~fD~Ii~~~g~~~-------ip~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 145 PEFAPYDVIFVTVGVDE-------VPETWFTQLKEGGRVIVPI 180 (322)
T ss_pred cccCCccEEEECCchHH-------hHHHHHHhcCCCCEEEEEe
Confidence 55578999998765432 2345678999999998864
No 119
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.58 E-value=2.8e-07 Score=91.91 Aligned_cols=94 Identities=19% Similarity=0.239 Sum_probs=72.8
Q ss_pred CCCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEeccccc
Q 009069 218 SIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLI 293 (544)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~sFDlV~~~~~l~ 293 (544)
..++|||||+|.|.++..++++ .+++.|+ +..++.+.+ ...+.+..+|.. -++|. +|+++..+++|
T Consensus 100 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl------p~v~~~~~~-~~rv~~~~gd~f-~~~P~--~D~~~l~~vLh 169 (241)
T PF00891_consen 100 GFKTVVDVGGGSGHFAIALARAYPNLRATVFDL------PEVIEQAKE-ADRVEFVPGDFF-DPLPV--ADVYLLRHVLH 169 (241)
T ss_dssp TSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-------HHHHCCHHH-TTTEEEEES-TT-TCCSS--ESEEEEESSGG
T ss_pred CccEEEeccCcchHHHHHHHHHCCCCcceeecc------Hhhhhcccc-ccccccccccHH-hhhcc--ccceeeehhhh
Confidence 3458999999999999999886 3555565 344445544 557888888877 67776 99999999999
Q ss_pred ccccCh-HHHHHHHHHcccCC--cEEEEEeC
Q 009069 294 PWGQYD-GLYLIEVDRVLRPG--GYWILSGP 321 (544)
Q Consensus 294 h~~~d~-~~~L~Ei~RVLKPG--G~Lvis~p 321 (544)
+|.++. ..+|+.+.+.|+|| |.++|.+.
T Consensus 170 ~~~d~~~~~iL~~~~~al~pg~~g~llI~e~ 200 (241)
T PF00891_consen 170 DWSDEDCVKILRNAAAALKPGKDGRLLIIEM 200 (241)
T ss_dssp GS-HHHHHHHHHHHHHHSEECTTEEEEEEEE
T ss_pred hcchHHHHHHHHHHHHHhCCCCCCeEEEEee
Confidence 999866 78999999999999 99999864
No 120
>PRK00811 spermidine synthase; Provisional
Probab=98.58 E-value=6.3e-07 Score=92.18 Aligned_cols=102 Identities=13% Similarity=0.146 Sum_probs=71.6
Q ss_pred CCCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHH-----cCCCeEEEEecccc-CCCCCCCeeEEE
Q 009069 218 SIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALE-----RGVPALIGVMASIR-LPYPSRAFDMAH 287 (544)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~e-----rgv~~~~~v~d~~~-LPfpd~sFDlV~ 287 (544)
..++|||||||.|..+..++++ .|+++|+++..+..+...+... ...++.+..+|... +...+++||+|+
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi 155 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVII 155 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEE
Confidence 4568999999999999998876 4788888876665444433221 12356777777544 333567899999
Q ss_pred ecccccccccC----hHHHHHHHHHcccCCcEEEEEe
Q 009069 288 CSRCLIPWGQY----DGLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 288 ~~~~l~h~~~d----~~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
+...- ++... ...+++.+.++|+|||.+++..
T Consensus 156 ~D~~d-p~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~ 191 (283)
T PRK00811 156 VDSTD-PVGPAEGLFTKEFYENCKRALKEDGIFVAQS 191 (283)
T ss_pred ECCCC-CCCchhhhhHHHHHHHHHHhcCCCcEEEEeC
Confidence 85432 33221 1578899999999999999864
No 121
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.56 E-value=9.2e-07 Score=92.06 Aligned_cols=100 Identities=14% Similarity=0.133 Sum_probs=70.2
Q ss_pred CEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEeccccCCCCCCCeeEEEeccccc
Q 009069 220 RTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIRLPYPSRAFDMAHCSRCLI 293 (544)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv--~~~~~v~d~~~LPfpd~sFDlV~~~~~l~ 293 (544)
.+|||+|||+|.++..++.. .++++|+++..+..++.+ +...++ .+.+..+|... ++++++||+|+|+.-..
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n-~~~~~l~~~i~~~~~D~~~-~l~~~~fDlIvsNPPyi 212 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEIN-IERHGLEDRVTLIESDLFA-ALPGRRYDLIVSNPPYV 212 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHH-HHHhCCCCcEEEEECchhh-hCCCCCccEEEECCCCC
Confidence 47999999999999999865 578888888777555543 333443 37777777543 23456899999974221
Q ss_pred -------------cccc-------Ch----HHHHHHHHHcccCCcEEEEEeC
Q 009069 294 -------------PWGQ-------YD----GLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 294 -------------h~~~-------d~----~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
|.+. +. ..++.++.++|+|||.+++...
T Consensus 213 ~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g 264 (307)
T PRK11805 213 DAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVG 264 (307)
T ss_pred CccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 1110 01 4678999999999999999754
No 122
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.56 E-value=2.9e-07 Score=90.73 Aligned_cols=111 Identities=16% Similarity=0.127 Sum_probs=73.5
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC----C-cEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccC
Q 009069 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR----N-ILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRL 276 (544)
Q Consensus 202 ~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~----~-V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~L 276 (544)
-.....+.+.+.++++. +|||||||+|.+++.|+.. + |+++++.+.-...++..+......++.+..+|...-
T Consensus 58 P~~~a~~l~~L~l~pg~--~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g 135 (209)
T PF01135_consen 58 PSMVARMLEALDLKPGD--RVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEG 135 (209)
T ss_dssp HHHHHHHHHHTTC-TT---EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGT
T ss_pred HHHHHHHHHHHhcCCCC--EEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhc
Confidence 34556777788777766 9999999999999888864 2 678888775444444444433333678888876443
Q ss_pred CCCCCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 277 PYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 277 Pfpd~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
--....||.|++..+....+ ..+.+.||+||.+++-..
T Consensus 136 ~~~~apfD~I~v~~a~~~ip-------~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 136 WPEEAPFDRIIVTAAVPEIP-------EALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp TGGG-SEEEEEESSBBSS---------HHHHHTEEEEEEEEEEES
T ss_pred cccCCCcCEEEEeeccchHH-------HHHHHhcCCCcEEEEEEc
Confidence 22456799999988763322 447778999999999743
No 123
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.52 E-value=3.5e-07 Score=86.58 Aligned_cols=105 Identities=15% Similarity=0.148 Sum_probs=70.9
Q ss_pred HHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCee
Q 009069 207 DIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFD 284 (544)
Q Consensus 207 ~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~sFD 284 (544)
.+.+.+....+ .+|||+|||+|.++..++++ .++++|+++.++...+..+. ...++.+..+|+..+++++..||
T Consensus 4 ~i~~~~~~~~~--~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~--~~~~v~ii~~D~~~~~~~~~~~d 79 (169)
T smart00650 4 KIVRAANLRPG--DTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFA--AADNLTVIHGDALKFDLPKLQPY 79 (169)
T ss_pred HHHHhcCCCCc--CEEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhc--cCCCEEEEECchhcCCccccCCC
Confidence 44555544443 38999999999999999987 57788887655543332221 12357788889999888887899
Q ss_pred EEEecccccccccChHHHHHHHHHc--ccCCcEEEEE
Q 009069 285 MAHCSRCLIPWGQYDGLYLIEVDRV--LRPGGYWILS 319 (544)
Q Consensus 285 lV~~~~~l~h~~~d~~~~L~Ei~RV--LKPGG~Lvis 319 (544)
.|+++.-+ +.. ...+..+.+. +.++|.|++.
T Consensus 80 ~vi~n~Py-~~~---~~~i~~~l~~~~~~~~~~l~~q 112 (169)
T smart00650 80 KVVGNLPY-NIS---TPILFKLLEEPPAFRDAVLMVQ 112 (169)
T ss_pred EEEECCCc-ccH---HHHHHHHHhcCCCcceEEEEEE
Confidence 99998754 322 2334444332 4588888886
No 124
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.52 E-value=6.5e-07 Score=97.19 Aligned_cols=111 Identities=14% Similarity=0.217 Sum_probs=76.4
Q ss_pred HHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCC--CCCC
Q 009069 208 IGKLINLKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLP--YPSR 281 (544)
Q Consensus 208 L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LP--fpd~ 281 (544)
+...+....+ .+|||+|||+|..+..++++ .++++|+++.++...+.+ +...+..+.+..+|...++ +..+
T Consensus 236 ~~~~l~~~~g--~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n-~~~~g~~~~~~~~D~~~~~~~~~~~ 312 (427)
T PRK10901 236 AATLLAPQNG--ERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVREN-LQRLGLKATVIVGDARDPAQWWDGQ 312 (427)
T ss_pred HHHHcCCCCC--CEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHH-HHHcCCCeEEEEcCcccchhhcccC
Confidence 4445544444 48999999999999988875 478888888766554433 3445666777778876654 3467
Q ss_pred CeeEEEecc----c--cc-----ccccC----------hHHHHHHHHHcccCCcEEEEEeC
Q 009069 282 AFDMAHCSR----C--LI-----PWGQY----------DGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 282 sFDlV~~~~----~--l~-----h~~~d----------~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
+||.|++.. . +. .|... ...+|.++.++|||||.+++++-
T Consensus 313 ~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystc 373 (427)
T PRK10901 313 PFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATC 373 (427)
T ss_pred CCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 899999532 1 10 11111 13689999999999999999864
No 125
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.50 E-value=7e-07 Score=97.11 Aligned_cols=111 Identities=18% Similarity=0.155 Sum_probs=77.1
Q ss_pred HHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEeccccCC----
Q 009069 208 IGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRLP---- 277 (544)
Q Consensus 208 L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-----~V~~vdisp~dls~a~v~~A~ergv-~~~~~v~d~~~LP---- 277 (544)
+...+...++ .+|||+|||+|..+..+++. .++++|+++..+...+.+ +...|+ ++.+...|...++
T Consensus 244 ~~~~l~~~~g--~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n-~~r~g~~~v~~~~~D~~~~~~~~~ 320 (434)
T PRK14901 244 VAPLLDPQPG--EVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQEN-AQRLGLKSIKILAADSRNLLELKP 320 (434)
T ss_pred HHHHhCCCCc--CEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHH-HHHcCCCeEEEEeCChhhcccccc
Confidence 3444444444 48999999999999888764 488888887776555443 334455 4677778877765
Q ss_pred CCCCCeeEEEec------cccccccc-----C----------hHHHHHHHHHcccCCcEEEEEeC
Q 009069 278 YPSRAFDMAHCS------RCLIPWGQ-----Y----------DGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 278 fpd~sFDlV~~~------~~l~h~~~-----d----------~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
+..++||.|++. .++.+.++ . +..+|.++.++|||||+|+.++-
T Consensus 321 ~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystc 385 (434)
T PRK14901 321 QWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATC 385 (434)
T ss_pred cccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 456789999962 22222221 0 25789999999999999999864
No 126
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.50 E-value=1.3e-06 Score=96.70 Aligned_cols=122 Identities=14% Similarity=0.125 Sum_probs=79.5
Q ss_pred CCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEeccccCCCCCCCeeEEEecccc
Q 009069 219 IRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIRLPYPSRAFDMAHCSRCL 292 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv--~~~~~v~d~~~LPfpd~sFDlV~~~~~l 292 (544)
..+|||+|||+|.++..++.. .++++|+++.++..+..+. ...++ .+.+..+|... ++++++||+|+|+.-.
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~-~~~~l~~~v~~~~~D~~~-~~~~~~fDlIvsNPPY 216 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNA-IKYEVTDRIQIIHSNWFE-NIEKQKFDFIVSNPPY 216 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHH-HHcCCccceeeeecchhh-hCcCCCccEEEECCCC
Confidence 347999999999999888753 5888999887776555443 33343 35666666432 2345689999996533
Q ss_pred ccccc---------------------Ch----HHHHHHHHHcccCCcEEEEEeCCCCccccccCCCcchhhhHhhhhhHH
Q 009069 293 IPWGQ---------------------YD----GLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIE 347 (544)
Q Consensus 293 ~h~~~---------------------d~----~~~L~Ei~RVLKPGG~Lvis~pp~~w~~~~~~w~~t~e~L~~~~~~ie 347 (544)
+...+ +. ..++.++.++|+|||.|++..... ..+.+.
T Consensus 217 i~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~~------------------q~~~v~ 278 (506)
T PRK01544 217 ISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGFK------------------QEEAVT 278 (506)
T ss_pred CCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECCc------------------hHHHHH
Confidence 22111 01 246778889999999999975311 123455
Q ss_pred HHHHhhcceeeee
Q 009069 348 TIARSLCWKKLIQ 360 (544)
Q Consensus 348 ~la~~l~w~~v~~ 360 (544)
.+++..+|+.+..
T Consensus 279 ~~~~~~g~~~~~~ 291 (506)
T PRK01544 279 QIFLDHGYNIESV 291 (506)
T ss_pred HHHHhcCCCceEE
Confidence 6666777765543
No 127
>PRK04457 spermidine synthase; Provisional
Probab=98.49 E-value=1.1e-06 Score=89.33 Aligned_cols=100 Identities=13% Similarity=0.169 Sum_probs=67.8
Q ss_pred CCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHc-CCCeEEEEecccc-CCCCCCCeeEEEecccc
Q 009069 219 IRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALER-GVPALIGVMASIR-LPYPSRAFDMAHCSRCL 292 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~er-gv~~~~~v~d~~~-LPfpd~sFDlV~~~~~l 292 (544)
+++|||||||+|.++..+++. .++++|+++..+..+...+.... ..++.+.++|... +.-..++||+|++.. +
T Consensus 67 ~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~-~ 145 (262)
T PRK04457 67 PQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG-F 145 (262)
T ss_pred CCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC-C
Confidence 458999999999999988764 57888887765544443332211 2346777777533 222246899999753 2
Q ss_pred cc--ccc--ChHHHHHHHHHcccCCcEEEEE
Q 009069 293 IP--WGQ--YDGLYLIEVDRVLRPGGYWILS 319 (544)
Q Consensus 293 ~h--~~~--d~~~~L~Ei~RVLKPGG~Lvis 319 (544)
.. .+. ....+++++.++|+|||.|++.
T Consensus 146 ~~~~~~~~l~t~efl~~~~~~L~pgGvlvin 176 (262)
T PRK04457 146 DGEGIIDALCTQPFFDDCRNALSSDGIFVVN 176 (262)
T ss_pred CCCCCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence 11 111 1268999999999999999996
No 128
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.48 E-value=1e-06 Score=95.50 Aligned_cols=112 Identities=10% Similarity=0.052 Sum_probs=75.3
Q ss_pred HHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEE--EEeccccCCC--
Q 009069 207 DIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGVPALI--GVMASIRLPY-- 278 (544)
Q Consensus 207 ~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv~~~~--~v~d~~~LPf-- 278 (544)
.+...+....+ .+|||+|||+|..+..+++. .++++|+++..+...+.+ +...|+.+.+ ..+|....++
T Consensus 229 ~~~~~L~~~~g--~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n-~~r~g~~~~v~~~~~d~~~~~~~~ 305 (426)
T TIGR00563 229 WVATWLAPQNE--ETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYEN-LKRLGLTIKAETKDGDGRGPSQWA 305 (426)
T ss_pred HHHHHhCCCCC--CeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHH-HHHcCCCeEEEEeccccccccccc
Confidence 45555554444 48999999999998888764 588889988777555433 3344555433 4445444443
Q ss_pred CCCCeeEEEe----c--cccccccc-----C----------hHHHHHHHHHcccCCcEEEEEeC
Q 009069 279 PSRAFDMAHC----S--RCLIPWGQ-----Y----------DGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 279 pd~sFDlV~~----~--~~l~h~~~-----d----------~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
++++||.|++ + ..+.+.++ . +..+|.++.++|||||.|++++-
T Consensus 306 ~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystc 369 (426)
T TIGR00563 306 ENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATC 369 (426)
T ss_pred cccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 5678999995 2 23322221 1 25799999999999999999975
No 129
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.46 E-value=5.4e-07 Score=98.27 Aligned_cols=101 Identities=17% Similarity=0.168 Sum_probs=71.3
Q ss_pred CCEEEEeCCCCcHHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEeccccCCCCCCCeeEEEe----
Q 009069 219 IRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRLPYPSRAFDMAHC---- 288 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~-----~V~~vdisp~dls~a~v~~A~ergv-~~~~~v~d~~~LPfpd~sFDlV~~---- 288 (544)
+.+|||+|||+|..+..+++. .++++|+++.++..++.+ +.+.|+ .+.+...|...++ ++++||+|++
T Consensus 251 g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~-~~~~g~~~v~~~~~Da~~~~-~~~~fD~Vl~D~Pc 328 (445)
T PRK14904 251 GSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSH-ASALGITIIETIEGDARSFS-PEEQPDAILLDAPC 328 (445)
T ss_pred CCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHH-HHHhCCCeEEEEeCcccccc-cCCCCCEEEEcCCC
Confidence 348999999999988777653 488899988777655433 344455 3677777877665 5678999995
Q ss_pred ccc--cc-----ccccC----------hHHHHHHHHHcccCCcEEEEEeC
Q 009069 289 SRC--LI-----PWGQY----------DGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 289 ~~~--l~-----h~~~d----------~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
+.. +. .|... +..+|.++.++|||||.+++++-
T Consensus 329 sg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystc 378 (445)
T PRK14904 329 TGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATC 378 (445)
T ss_pred CCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 221 10 11111 23689999999999999999975
No 130
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.46 E-value=4.6e-06 Score=85.81 Aligned_cols=118 Identities=20% Similarity=0.251 Sum_probs=77.5
Q ss_pred EEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEeccccCCCCCCCeeEEEeccccccc
Q 009069 221 TAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRLPYPSRAFDMAHCSRCLIPW 295 (544)
Q Consensus 221 ~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv-~~~~~v~d~~~LPfpd~sFDlV~~~~~l~h~ 295 (544)
+|||+|||+|..+..++.+ .|+++|+++..+.-+.. .|...++ +..+...| .-.+.. ++||+|+|+.-..+-
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~-Na~~~~l~~~~~~~~d-lf~~~~-~~fDlIVsNPPYip~ 189 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARE-NAERNGLVRVLVVQSD-LFEPLR-GKFDLIVSNPPYIPA 189 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHH-HHHHcCCccEEEEeee-cccccC-CceeEEEeCCCCCCC
Confidence 6999999999999999875 58889998876654443 3445553 33334332 122222 389999998754433
Q ss_pred c----------cCh--------------HHHHHHHHHcccCCcEEEEEeCCCCccccccCCCcchhhhHhhhhhHHHHHH
Q 009069 296 G----------QYD--------------GLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIAR 351 (544)
Q Consensus 296 ~----------~d~--------------~~~L~Ei~RVLKPGG~Lvis~pp~~w~~~~~~w~~t~e~L~~~~~~ie~la~ 351 (544)
. .+| ..++.++.+.|+|||.+++.....+ .+.++++..
T Consensus 190 ~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~q------------------~~~v~~~~~ 251 (280)
T COG2890 190 EDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLTQ------------------GEAVKALFE 251 (280)
T ss_pred cccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCCc------------------HHHHHHHHH
Confidence 2 011 2678889999999999999854111 234667777
Q ss_pred hhc-ceeee
Q 009069 352 SLC-WKKLI 359 (544)
Q Consensus 352 ~l~-w~~v~ 359 (544)
..+ +..+.
T Consensus 252 ~~~~~~~v~ 260 (280)
T COG2890 252 DTGFFEIVE 260 (280)
T ss_pred hcCCceEEE
Confidence 777 44443
No 131
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.44 E-value=4.4e-07 Score=92.32 Aligned_cols=108 Identities=14% Similarity=0.169 Sum_probs=73.5
Q ss_pred HhcccCCCCCEEEEeCCCCcHHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEeccccCCCCCCCee
Q 009069 211 LINLKDGSIRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRLPYPSRAFD 284 (544)
Q Consensus 211 lL~l~~g~~r~VLDIGCGtG~~a~~La~~-----~V~~vdisp~dls~a~v~~A~ergv-~~~~~v~d~~~LPfpd~sFD 284 (544)
.+...++ .+|||+|||+|..+..+++. .++++|+++..+.....++. ..++ ++.+...|...++...+.||
T Consensus 66 ~l~~~~g--~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~-~~g~~~v~~~~~D~~~~~~~~~~fD 142 (264)
T TIGR00446 66 ALEPDPP--ERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANIN-RCGVLNVAVTNFDGRVFGAAVPKFD 142 (264)
T ss_pred HhCCCCc--CEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHH-HcCCCcEEEecCCHHHhhhhccCCC
Confidence 3444444 48999999999999888763 47888888776654444433 3444 46677777766665566799
Q ss_pred EEEecc------cccc-------ccc--------ChHHHHHHHHHcccCCcEEEEEeC
Q 009069 285 MAHCSR------CLIP-------WGQ--------YDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 285 lV~~~~------~l~h-------~~~--------d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
.|++.. ++.+ +.+ ....+|..+.+.|||||+|+.++-
T Consensus 143 ~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstc 200 (264)
T TIGR00446 143 AILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTC 200 (264)
T ss_pred EEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 999621 1111 111 113589999999999999999965
No 132
>PHA03411 putative methyltransferase; Provisional
Probab=98.43 E-value=1.4e-06 Score=88.89 Aligned_cols=94 Identities=15% Similarity=0.173 Sum_probs=68.4
Q ss_pred CEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEeccccccc
Q 009069 220 RTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPW 295 (544)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~sFDlV~~~~~l~h~ 295 (544)
.+|||+|||+|.++..++.+ .++++|+++. +++.++++...+.+...|...+. .+++||+|+++..+++.
T Consensus 66 grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~-----al~~Ar~n~~~v~~v~~D~~e~~-~~~kFDlIIsNPPF~~l 139 (279)
T PHA03411 66 GKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPE-----FARIGKRLLPEAEWITSDVFEFE-SNEKFDVVISNPPFGKI 139 (279)
T ss_pred CeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHH-----HHHHHHHhCcCCEEEECchhhhc-ccCCCcEEEEcCCcccc
Confidence 47999999999998888664 4777777654 44555554445777888877665 35689999999988764
Q ss_pred ccCh-------------------HHHHHHHHHcccCCcEEEEE
Q 009069 296 GQYD-------------------GLYLIEVDRVLRPGGYWILS 319 (544)
Q Consensus 296 ~~d~-------------------~~~L~Ei~RVLKPGG~Lvis 319 (544)
.... ..++..+.++|+|+|.+.+.
T Consensus 140 ~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~ 182 (279)
T PHA03411 140 NTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA 182 (279)
T ss_pred CchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence 3321 25667788899999987775
No 133
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=1.5e-06 Score=85.20 Aligned_cols=108 Identities=14% Similarity=0.158 Sum_probs=72.7
Q ss_pred HHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEeccccCCCCC
Q 009069 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRLPYPS 280 (544)
Q Consensus 204 ~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~A~ergv-~~~~~v~d~~~LPfpd 280 (544)
....+.+++.+.+++ +|||||||+|..++-|++. .|..++..+.-...+..++. ..|. ++.+.++|...=--+.
T Consensus 60 ~vA~m~~~L~~~~g~--~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~-~lg~~nV~v~~gDG~~G~~~~ 136 (209)
T COG2518 60 MVARMLQLLELKPGD--RVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLE-TLGYENVTVRHGDGSKGWPEE 136 (209)
T ss_pred HHHHHHHHhCCCCCC--eEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHH-HcCCCceEEEECCcccCCCCC
Confidence 445677788777776 9999999999999999886 56666664432222222222 2344 5777777643321234
Q ss_pred CCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 281 RAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 281 ~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
..||.|+...+....+ ..+.+-||+||.+++-.-
T Consensus 137 aPyD~I~Vtaaa~~vP-------~~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 137 APYDRIIVTAAAPEVP-------EALLDQLKPGGRLVIPVG 170 (209)
T ss_pred CCcCEEEEeeccCCCC-------HHHHHhcccCCEEEEEEc
Confidence 7899999988774444 346677999999999643
No 134
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.41 E-value=2.3e-06 Score=84.86 Aligned_cols=98 Identities=20% Similarity=0.201 Sum_probs=70.8
Q ss_pred CCEEEEeCCCCcHHHHHHhhCCcEEEeCCccchHHHHHHHH-HHcCC----------------CeEEEEeccccCCCCC-
Q 009069 219 IRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFA-LERGV----------------PALIGVMASIRLPYPS- 280 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~V~~vdisp~dls~a~v~~A-~ergv----------------~~~~~v~d~~~LPfpd- 280 (544)
..+||+.|||.|..+..|+++|..++++ |+++.+++.+ .+++. .+.+.++|...++...
T Consensus 38 ~~rvLvPgCG~g~D~~~La~~G~~VvGv---Dls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~ 114 (218)
T PF05724_consen 38 GGRVLVPGCGKGYDMLWLAEQGHDVVGV---DLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPEDV 114 (218)
T ss_dssp SEEEEETTTTTSCHHHHHHHTTEEEEEE---ES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSCH
T ss_pred CCeEEEeCCCChHHHHHHHHCCCeEEEE---ecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhhc
Confidence 3489999999999999999997555555 4555555554 23321 2466778877766433
Q ss_pred CCeeEEEecccccccccCh-HHHHHHHHHcccCCcEEEEE
Q 009069 281 RAFDMAHCSRCLIPWGQYD-GLYLIEVDRVLRPGGYWILS 319 (544)
Q Consensus 281 ~sFDlV~~~~~l~h~~~d~-~~~L~Ei~RVLKPGG~Lvis 319 (544)
++||+|+-..+|+-++++. ..+.+.+.++|+|||.+++.
T Consensus 115 g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi 154 (218)
T PF05724_consen 115 GKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLI 154 (218)
T ss_dssp HSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEE
T ss_pred CCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEE
Confidence 4799999988887777655 78999999999999995443
No 135
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.41 E-value=8.8e-07 Score=86.37 Aligned_cols=100 Identities=19% Similarity=0.265 Sum_probs=70.9
Q ss_pred EEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEecccc-CC--CCCCCeeEEEeccccc
Q 009069 221 TAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIR-LP--YPSRAFDMAHCSRCLI 293 (544)
Q Consensus 221 ~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~-LP--fpd~sFDlV~~~~~l~ 293 (544)
.+||||||.|.+...++.. +++++|+...-+..+..+.......++.+..+|+.. +. ++++++|.|+..+-=
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPD- 98 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFPD- 98 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES---
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCCC-
Confidence 7999999999999999875 688888877666555554444444478888877655 22 567999999986633
Q ss_pred ccccCh--------HHHHHHHHHcccCCcEEEEEeC
Q 009069 294 PWGQYD--------GLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 294 h~~~d~--------~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
+|+... ..++.++.++|+|||.|.+.+.
T Consensus 99 PWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD 134 (195)
T PF02390_consen 99 PWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATD 134 (195)
T ss_dssp ---SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES
T ss_pred CCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeC
Confidence 565422 4899999999999999999853
No 136
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.40 E-value=1.6e-06 Score=94.34 Aligned_cols=111 Identities=20% Similarity=0.222 Sum_probs=75.8
Q ss_pred HHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCC-eEEEEeccccCC-CCC
Q 009069 208 IGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGVP-ALIGVMASIRLP-YPS 280 (544)
Q Consensus 208 L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-----~V~~vdisp~dls~a~v~~A~ergv~-~~~~v~d~~~LP-fpd 280 (544)
+..++...++ .+|||+|||+|..+.++++. .++++|+++..+.....+ +.+.|+. +.+...|...++ +.+
T Consensus 229 ~~~~l~~~~g--~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n-~~r~g~~~v~~~~~Da~~l~~~~~ 305 (431)
T PRK14903 229 VPLLMELEPG--LRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKH-AKRLKLSSIEIKIADAERLTEYVQ 305 (431)
T ss_pred HHHHhCCCCC--CEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHH-HHHcCCCeEEEEECchhhhhhhhh
Confidence 3334444444 48999999999988887764 488899988777555443 3344553 667778877766 456
Q ss_pred CCeeEEEecc-c--cccccc------------------ChHHHHHHHHHcccCCcEEEEEeC
Q 009069 281 RAFDMAHCSR-C--LIPWGQ------------------YDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 281 ~sFDlV~~~~-~--l~h~~~------------------d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
++||.|++.. | +..+.. .+..+|.++.+.|||||.+++++-
T Consensus 306 ~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTC 367 (431)
T PRK14903 306 DTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTC 367 (431)
T ss_pred ccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 7899999621 1 111111 124678999999999999999975
No 137
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.37 E-value=4.5e-06 Score=85.19 Aligned_cols=102 Identities=10% Similarity=0.106 Sum_probs=67.9
Q ss_pred CCCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHc----CCCeEEEEecccc-CCCCCCCeeEEEe
Q 009069 218 SIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALER----GVPALIGVMASIR-LPYPSRAFDMAHC 288 (544)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~er----gv~~~~~v~d~~~-LPfpd~sFDlV~~ 288 (544)
.+++||+||||+|.++..+++. .++++|+++..+..+...+.... ...+.+...|... +.-..++||+|++
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~ 151 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIV 151 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEE
Confidence 3458999999999999888765 47888887766554443322211 1235555555432 2223578999998
Q ss_pred cccccccccC----hHHHHHHHHHcccCCcEEEEEe
Q 009069 289 SRCLIPWGQY----DGLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 289 ~~~l~h~~~d----~~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
.... +.... ...+++.+.++|+|||.+++..
T Consensus 152 D~~~-~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~ 186 (270)
T TIGR00417 152 DSTD-PVGPAETLFTKEFYELLKKALNEDGIFVAQS 186 (270)
T ss_pred eCCC-CCCcccchhHHHHHHHHHHHhCCCcEEEEcC
Confidence 6542 22221 2578899999999999999874
No 138
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.37 E-value=1.2e-06 Score=95.58 Aligned_cols=111 Identities=14% Similarity=0.159 Sum_probs=74.2
Q ss_pred HHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEeccccCC--C
Q 009069 207 DIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRLP--Y 278 (544)
Q Consensus 207 ~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-----~V~~vdisp~dls~a~v~~A~ergv-~~~~~v~d~~~LP--f 278 (544)
.+...+...++ .+|||+|||+|..+..+++. .++++|+++..+..++. .+.+.++ .+.+..+|...++ +
T Consensus 241 lv~~~l~~~~g--~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~-n~~~~g~~~v~~~~~D~~~~~~~~ 317 (444)
T PRK14902 241 LVAPALDPKGG--DTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEE-NAKRLGLTNIETKALDARKVHEKF 317 (444)
T ss_pred HHHHHhCCCCC--CEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHH-HHHHcCCCeEEEEeCCcccccchh
Confidence 34445544444 48999999999999888764 48888887766654443 3334454 3677777776653 3
Q ss_pred CCCCeeEEEeccc------ccc-----cccC----------hHHHHHHHHHcccCCcEEEEEeC
Q 009069 279 PSRAFDMAHCSRC------LIP-----WGQY----------DGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 279 pd~sFDlV~~~~~------l~h-----~~~d----------~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
+ ++||+|++..- +.+ |... ...+|.++.++|||||.|++++.
T Consensus 318 ~-~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystc 380 (444)
T PRK14902 318 A-EKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTC 380 (444)
T ss_pred c-ccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcC
Confidence 3 78999997431 111 1111 13579999999999999998864
No 139
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.35 E-value=3.3e-06 Score=92.13 Aligned_cols=116 Identities=13% Similarity=0.153 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEecccc--
Q 009069 201 ADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIR-- 275 (544)
Q Consensus 201 a~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~A~ergv-~~~~~v~d~~~-- 275 (544)
.+..++.+.+.+....+ .+|||+|||+|.++..|++. .++++|+++.++..+..+. ...++ ++.+..+|+..
T Consensus 282 ~e~l~~~vl~~l~~~~~--~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~~n~-~~~~~~~v~~~~~d~~~~l 358 (443)
T PRK13168 282 NQKMVARALEWLDPQPG--DRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARENA-RRNGLDNVTFYHANLEEDF 358 (443)
T ss_pred HHHHHHHHHHHhcCCCC--CEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHH-HHcCCCceEEEEeChHHhh
Confidence 34455566666654443 48999999999999999876 5778888887776555433 33444 57888888643
Q ss_pred --CCCCCCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeCCCC
Q 009069 276 --LPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPPVN 324 (544)
Q Consensus 276 --LPfpd~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~pp~~ 324 (544)
+++.+++||+|++..-. .. ....+..+.+ ++|++.++++-+|..
T Consensus 359 ~~~~~~~~~fD~Vi~dPPr---~g-~~~~~~~l~~-~~~~~ivyvSCnp~t 404 (443)
T PRK13168 359 TDQPWALGGFDKVLLDPPR---AG-AAEVMQALAK-LGPKRIVYVSCNPAT 404 (443)
T ss_pred hhhhhhcCCCCEEEECcCC---cC-hHHHHHHHHh-cCCCeEEEEEeChHH
Confidence 34556789999987633 22 2345555555 699999999976544
No 140
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=98.34 E-value=1.1e-05 Score=77.64 Aligned_cols=105 Identities=16% Similarity=0.059 Sum_probs=70.7
Q ss_pred HHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEecccc-CCCCCC
Q 009069 208 IGKLINLKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIR-LPYPSR 281 (544)
Q Consensus 208 L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv-~~~~~v~d~~~-LPfpd~ 281 (544)
....|.+.+++ .++|||||+|+.+..++.. .++++|-++..+.....+.+ .-++ ++.+..+++.. |+-. .
T Consensus 26 ~ls~L~~~~g~--~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~-~fg~~n~~vv~g~Ap~~L~~~-~ 101 (187)
T COG2242 26 TLSKLRPRPGD--RLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAA-RFGVDNLEVVEGDAPEALPDL-P 101 (187)
T ss_pred HHHhhCCCCCC--EEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHH-HhCCCcEEEEeccchHhhcCC-C
Confidence 33444455555 8999999999999999832 56767665544433333322 2234 56677666533 3322 2
Q ss_pred CeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 282 AFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 282 sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
+||.|+..... ....+|+.+...|||||.+++..-
T Consensus 102 ~~daiFIGGg~-----~i~~ile~~~~~l~~ggrlV~nai 136 (187)
T COG2242 102 SPDAIFIGGGG-----NIEEILEAAWERLKPGGRLVANAI 136 (187)
T ss_pred CCCEEEECCCC-----CHHHHHHHHHHHcCcCCeEEEEee
Confidence 79999987742 357899999999999999999853
No 141
>PLN02366 spermidine synthase
Probab=98.31 E-value=7.5e-06 Score=85.32 Aligned_cols=102 Identities=15% Similarity=0.157 Sum_probs=68.5
Q ss_pred CCCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHH----cCCCeEEEEeccccC--CCCCCCeeEEE
Q 009069 218 SIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALE----RGVPALIGVMASIRL--PYPSRAFDMAH 287 (544)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~e----rgv~~~~~v~d~~~L--Pfpd~sFDlV~ 287 (544)
..++||+||||.|..+..+++. .++++|+++..+..+...+... ....+.+..+|.... ..+++.||+|+
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvIi 170 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAII 170 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEEE
Confidence 3568999999999999999876 4677888765444333323211 123577777775322 12357899999
Q ss_pred ecccccccccC----hHHHHHHHHHcccCCcEEEEEe
Q 009069 288 CSRCLIPWGQY----DGLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 288 ~~~~l~h~~~d----~~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
+-..- ++... ...+++.+.++|+|||.++...
T Consensus 171 ~D~~d-p~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~ 206 (308)
T PLN02366 171 VDSSD-PVGPAQELFEKPFFESVARALRPGGVVCTQA 206 (308)
T ss_pred EcCCC-CCCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence 85432 33221 1478999999999999998754
No 142
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.28 E-value=5.8e-06 Score=82.52 Aligned_cols=99 Identities=16% Similarity=0.259 Sum_probs=77.5
Q ss_pred EEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEeccccCC---CCCCCeeEEEecccc
Q 009069 221 TAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRLP---YPSRAFDMAHCSRCL 292 (544)
Q Consensus 221 ~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv-~~~~~v~d~~~LP---fpd~sFDlV~~~~~l 292 (544)
.+||||||.|.+...++++ +++++++...-+ ....+.+.+.++ ++.+...|+..+- +++++.|-|+.++.=
T Consensus 51 i~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v-~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FPD 129 (227)
T COG0220 51 IVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGV-AKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFPD 129 (227)
T ss_pred EEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHH-HHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECCC
Confidence 7999999999999999986 688888866444 444556677888 8888888764432 456699999986643
Q ss_pred cccccCh--------HHHHHHHHHcccCCcEEEEEeC
Q 009069 293 IPWGQYD--------GLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 293 ~h~~~d~--------~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
+|+... ..++.++.++|+|||.|.+.+.
T Consensus 130 -PWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD 165 (227)
T COG0220 130 -PWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATD 165 (227)
T ss_pred -CCCCccccccccCCHHHHHHHHHHccCCCEEEEEec
Confidence 776533 4899999999999999999854
No 143
>PHA03412 putative methyltransferase; Provisional
Probab=98.28 E-value=4.4e-06 Score=83.59 Aligned_cols=93 Identities=13% Similarity=0.144 Sum_probs=63.8
Q ss_pred CCEEEEeCCCCcHHHHHHhhC-------CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEeccc
Q 009069 219 IRTAIDTGCGVASWGAYLMSR-------NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRC 291 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~-------~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~sFDlV~~~~~ 291 (544)
..+|||+|||+|.++..++++ .++++|+++. +.+.|+++...+.+...|....++ +++||+|+++.-
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~-----Al~~Ar~n~~~~~~~~~D~~~~~~-~~~FDlIIsNPP 123 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHT-----YYKLGKRIVPEATWINADALTTEF-DTLFDMAISNPP 123 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHH-----HHHHHHhhccCCEEEEcchhcccc-cCCccEEEECCC
Confidence 348999999999999988653 4677777554 445555544457777888766554 568999999876
Q ss_pred ccccccC-----------hHHHHHHHHHcccCCcEEEE
Q 009069 292 LIPWGQY-----------DGLYLIEVDRVLRPGGYWIL 318 (544)
Q Consensus 292 l~h~~~d-----------~~~~L~Ei~RVLKPGG~Lvi 318 (544)
+...... ...++..+.|++++|+. |+
T Consensus 124 Y~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~-IL 160 (241)
T PHA03412 124 FGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF-II 160 (241)
T ss_pred CCCccccccCCcccccHHHHHHHHHHHHHcCCCEE-Ee
Confidence 6422110 13578888887777775 44
No 144
>PRK01581 speE spermidine synthase; Validated
Probab=98.26 E-value=5.3e-06 Score=87.77 Aligned_cols=115 Identities=12% Similarity=0.031 Sum_probs=73.1
Q ss_pred HHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHH--HH--HH---cCCCeEEEEecc
Q 009069 205 IDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQ--FA--LE---RGVPALIGVMAS 273 (544)
Q Consensus 205 i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~--~A--~e---rgv~~~~~v~d~ 273 (544)
-+.+....-......++||+||||+|..++.+++. .++++|+++..+..+..- +. .. ....+.+.+.|+
T Consensus 137 HE~Lvhp~m~~h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da 216 (374)
T PRK01581 137 HEALVHPIMSKVIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDA 216 (374)
T ss_pred HHHHHHHHHHhCCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcH
Confidence 34444432223344568999999999998888875 477888866555433310 00 00 124577777776
Q ss_pred cc-CCCCCCCeeEEEeccccccccc---C--hHHHHHHHHHcccCCcEEEEEe
Q 009069 274 IR-LPYPSRAFDMAHCSRCLIPWGQ---Y--DGLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 274 ~~-LPfpd~sFDlV~~~~~l~h~~~---d--~~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
.. +.-.++.||+|++... .+... . ...++..+.+.|+|||.|++..
T Consensus 217 ~~fL~~~~~~YDVIIvDl~-DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs 268 (374)
T PRK01581 217 KEFLSSPSSLYDVIIIDFP-DPATELLSTLYTSELFARIATFLTEDGAFVCQS 268 (374)
T ss_pred HHHHHhcCCCccEEEEcCC-CccccchhhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 54 3444678999998642 12111 0 1578999999999999998874
No 145
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.24 E-value=1.4e-05 Score=78.33 Aligned_cols=118 Identities=8% Similarity=0.011 Sum_probs=73.8
Q ss_pred cccHHHHHHHHHHHhcc-cCCCCCEEEEeCCCCcHHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEec
Q 009069 198 PRGADAYIDDIGKLINL-KDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERGV-PALIGVMA 272 (544)
Q Consensus 198 ~~ga~~~i~~L~~lL~l-~~g~~r~VLDIGCGtG~~a~~La~~---~V~~vdisp~dls~a~v~~A~ergv-~~~~~v~d 272 (544)
....+...+.+.+.+.. .. +.+|||+|||+|.++..++.+ .++++|+++..+..+..++ ...+. ++.+...|
T Consensus 34 Rp~~d~v~e~l~~~l~~~~~--~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl-~~~~~~~v~~~~~D 110 (199)
T PRK10909 34 RPTTDRVRETLFNWLAPVIV--DARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNL-ATLKAGNARVVNTN 110 (199)
T ss_pred CcCCHHHHHHHHHHHhhhcC--CCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHH-HHhCCCcEEEEEch
Confidence 44556665556665532 22 348999999999999865443 5778888765554333332 22333 46777777
Q ss_pred ccc-CCCCCCCeeEEEecccccccccCh-HHHHHHHHH--cccCCcEEEEEeC
Q 009069 273 SIR-LPYPSRAFDMAHCSRCLIPWGQYD-GLYLIEVDR--VLRPGGYWILSGP 321 (544)
Q Consensus 273 ~~~-LPfpd~sFDlV~~~~~l~h~~~d~-~~~L~Ei~R--VLKPGG~Lvis~p 321 (544)
... ++...+.||+|++..-+ .... ..++..+.. +|+|+|.++++.+
T Consensus 111 ~~~~l~~~~~~fDlV~~DPPy---~~g~~~~~l~~l~~~~~l~~~~iv~ve~~ 160 (199)
T PRK10909 111 ALSFLAQPGTPHNVVFVDPPF---RKGLLEETINLLEDNGWLADEALIYVESE 160 (199)
T ss_pred HHHHHhhcCCCceEEEECCCC---CCChHHHHHHHHHHCCCcCCCcEEEEEec
Confidence 544 22234579999998843 2222 455555554 3799999999865
No 146
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.21 E-value=1.1e-05 Score=84.21 Aligned_cols=115 Identities=14% Similarity=0.089 Sum_probs=75.0
Q ss_pred HHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEeccccCCC-
Q 009069 203 AYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRLPY- 278 (544)
Q Consensus 203 ~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~A~ergv-~~~~~v~d~~~LPf- 278 (544)
..++.+.+++.... +.+|||+|||+|.++..|+++ .++++|+++.++..+.. .+...++ ++.+..+|+..+..
T Consensus 160 ~l~~~v~~~l~~~~--~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~~-n~~~~~l~~v~~~~~D~~~~~~~ 236 (315)
T PRK03522 160 QLYATARDWVRELP--PRSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAKQ-SAAELGLTNVQFQALDSTQFATA 236 (315)
T ss_pred HHHHHHHHHHHhcC--CCEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHHH-HHHHcCCCceEEEEcCHHHHHHh
Confidence 33444445553222 348999999999999999987 47888888777655443 3444555 47888888766542
Q ss_pred CCCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeCCCC
Q 009069 279 PSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPPVN 324 (544)
Q Consensus 279 pd~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~pp~~ 324 (544)
..+.||+|++..-. .. ....+.++..-++|++.++++..|..
T Consensus 237 ~~~~~D~Vv~dPPr---~G-~~~~~~~~l~~~~~~~ivyvsc~p~t 278 (315)
T PRK03522 237 QGEVPDLVLVNPPR---RG-IGKELCDYLSQMAPRFILYSSCNAQT 278 (315)
T ss_pred cCCCCeEEEECCCC---CC-ccHHHHHHHHHcCCCeEEEEECCccc
Confidence 34579999987532 11 12233344445789999998876544
No 147
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.17 E-value=1.2e-05 Score=80.28 Aligned_cols=141 Identities=15% Similarity=0.124 Sum_probs=80.0
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCCeE-EEEecccc--
Q 009069 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERGVPAL-IGVMASIR-- 275 (544)
Q Consensus 202 ~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---~V~~vdisp~dls~a~v~~A~ergv~~~-~~v~d~~~-- 275 (544)
...+..+.+.+... ..+.++||+|||+|.|+..|+++ .++++|+++.++.. ..+....+. +...+...
T Consensus 60 ~~kL~~~l~~~~~~-~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~-----~l~~~~~v~~~~~~ni~~~~ 133 (228)
T TIGR00478 60 GEKLKEALEEFNID-VKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAE-----KLRQDERVKVLERTNIRYVT 133 (228)
T ss_pred HHHHHHHHHhcCCC-CCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHH-----HHhcCCCeeEeecCCcccCC
Confidence 33344444444331 23558999999999999999987 47888887765543 222222221 22222222
Q ss_pred ---CCCCCCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeCCCCccc----cccCCCcchhhhHhhhhhHHH
Q 009069 276 ---LPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPPVNWES----HWKGWNRTTEDLKSEQNGIET 348 (544)
Q Consensus 276 ---LPfpd~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~pp~~w~~----~~~~w~~t~e~L~~~~~~ie~ 348 (544)
.+..-..||+++++..+ .|..+.+.|+| |.+++-.-|..-.. ..++-.++.+......+.+..
T Consensus 134 ~~~~~~d~~~~DvsfiS~~~---------~l~~i~~~l~~-~~~~~L~KPqFE~~~~~~~~~giv~~~~~~~~~~~~~~~ 203 (228)
T TIGR00478 134 PADIFPDFATFDVSFISLIS---------ILPELDLLLNP-NDLTLLFKPQFEAGREKKNKKGVVRDKEAIALALHKVID 203 (228)
T ss_pred HhHcCCCceeeeEEEeehHh---------HHHHHHHHhCc-CeEEEEcChHhhhcHhhcCcCCeecCHHHHHHHHHHHHH
Confidence 22122367877766533 57889999999 77776543222111 112334444444555556666
Q ss_pred HHHhhcceee
Q 009069 349 IARSLCWKKL 358 (544)
Q Consensus 349 la~~l~w~~v 358 (544)
.+...+|+..
T Consensus 204 ~~~~~~~~~~ 213 (228)
T TIGR00478 204 KGESPDFQEK 213 (228)
T ss_pred HHHcCCCeEe
Confidence 6677777644
No 148
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.17 E-value=2.9e-05 Score=78.05 Aligned_cols=105 Identities=18% Similarity=0.211 Sum_probs=74.7
Q ss_pred HHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCC-C-eEEEEeccccCCCC
Q 009069 207 DIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGV-P-ALIGVMASIRLPYP 279 (544)
Q Consensus 207 ~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-----~V~~vdisp~dls~a~v~~A~ergv-~-~~~~v~d~~~LPfp 279 (544)
.|...+.+.+++ +|||.|.|+|.++++|+.. .++..++-+.....|..++. +.++ + +.+...|....-++
T Consensus 85 ~I~~~~gi~pg~--rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~-~~~l~d~v~~~~~Dv~~~~~~ 161 (256)
T COG2519 85 YIVARLGISPGS--RVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLS-EFGLGDRVTLKLGDVREGIDE 161 (256)
T ss_pred HHHHHcCCCCCC--EEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHH-HhccccceEEEeccccccccc
Confidence 455666677766 9999999999999999953 46777775433333332222 2132 2 66666776665555
Q ss_pred CCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 280 SRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 280 d~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
+ .||+|+. ..+ +|-.++..++.+|+|||.+++-.|
T Consensus 162 ~-~vDav~L-----Dmp-~PW~~le~~~~~Lkpgg~~~~y~P 196 (256)
T COG2519 162 E-DVDAVFL-----DLP-DPWNVLEHVSDALKPGGVVVVYSP 196 (256)
T ss_pred c-ccCEEEE-----cCC-ChHHHHHHHHHHhCCCcEEEEEcC
Confidence 5 8999986 334 478999999999999999999877
No 149
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.15 E-value=1.1e-05 Score=87.55 Aligned_cols=112 Identities=15% Similarity=0.187 Sum_probs=74.2
Q ss_pred HHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEecccc----
Q 009069 203 AYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIR---- 275 (544)
Q Consensus 203 ~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~A~ergv-~~~~~v~d~~~---- 275 (544)
..++.+.+.+....+ .+|||+|||+|.++..|++. .++++|+++.++..+..+.. .+++ ++.+..+|...
T Consensus 279 ~l~~~~~~~l~~~~~--~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~~n~~-~~~~~nv~~~~~d~~~~l~~ 355 (431)
T TIGR00479 279 KLVDRALEALELQGE--ELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQNAE-LNGIANVEFLAGTLETVLPK 355 (431)
T ss_pred HHHHHHHHHhccCCC--CEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHHHHHH-HhCCCceEEEeCCHHHHHHH
Confidence 334455555544333 48999999999999999875 57888888777655554333 3444 57788888654
Q ss_pred CCCCCCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 276 LPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 276 LPfpd~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
+++.+++||+|+...... .-...++..+.+ |+|++.++++..
T Consensus 356 ~~~~~~~~D~vi~dPPr~---G~~~~~l~~l~~-l~~~~ivyvsc~ 397 (431)
T TIGR00479 356 QPWAGQIPDVLLLDPPRK---GCAAEVLRTIIE-LKPERIVYVSCN 397 (431)
T ss_pred HHhcCCCCCEEEECcCCC---CCCHHHHHHHHh-cCCCEEEEEcCC
Confidence 234456899999755321 112466666554 899998888854
No 150
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.15 E-value=6.5e-06 Score=81.90 Aligned_cols=113 Identities=19% Similarity=0.374 Sum_probs=68.2
Q ss_pred hcccCCCCCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHH--Hc--CCC------------------
Q 009069 212 INLKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFAL--ER--GVP------------------ 265 (544)
Q Consensus 212 L~l~~g~~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~--er--gv~------------------ 265 (544)
++...-....+|||||-.|.++..+++. .+.++||++.-+..|..+.-. .. .+.
T Consensus 52 L~~~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~ 131 (288)
T KOG2899|consen 52 LEKDWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRN 131 (288)
T ss_pred ccccccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccc
Confidence 3433334557999999999998888874 688899976555443322110 00 000
Q ss_pred -------------e-----EEEEeccccCCCCCCCeeEEEecccc----cccccCh-HHHHHHHHHcccCCcEEEEEeCC
Q 009069 266 -------------A-----LIGVMASIRLPYPSRAFDMAHCSRCL----IPWGQYD-GLYLIEVDRVLRPGGYWILSGPP 322 (544)
Q Consensus 266 -------------~-----~~~v~d~~~LPfpd~sFDlV~~~~~l----~h~~~d~-~~~L~Ei~RVLKPGG~Lvis~pp 322 (544)
+ .++.....-+.+....||+|.|...- ..|.++. ..+|..+.++|.|||+|++. |
T Consensus 132 ~a~~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE--P 209 (288)
T KOG2899|consen 132 EADRAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE--P 209 (288)
T ss_pred cccccccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc--C
Confidence 0 00000011122345679999983321 2345444 78999999999999999998 3
Q ss_pred CCcc
Q 009069 323 VNWE 326 (544)
Q Consensus 323 ~~w~ 326 (544)
.-|+
T Consensus 210 QpWk 213 (288)
T KOG2899|consen 210 QPWK 213 (288)
T ss_pred CchH
Confidence 3454
No 151
>PRK03612 spermidine synthase; Provisional
Probab=98.15 E-value=1.5e-05 Score=88.77 Aligned_cols=102 Identities=15% Similarity=0.095 Sum_probs=68.3
Q ss_pred CCCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHH--HHH-H----cCCCeEEEEecccc-CCCCCCCeeE
Q 009069 218 SIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQ--FAL-E----RGVPALIGVMASIR-LPYPSRAFDM 285 (544)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~--~A~-e----rgv~~~~~v~d~~~-LPfpd~sFDl 285 (544)
..++|||||||+|..+..++++ .++++|+++..+..++.. +.. . ....+.+...|... +...+++||+
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fDv 376 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFDV 376 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCCE
Confidence 3558999999999999988765 467778866555433321 110 0 11346777777654 2333578999
Q ss_pred EEecccccccccCh-----HHHHHHHHHcccCCcEEEEEe
Q 009069 286 AHCSRCLIPWGQYD-----GLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 286 V~~~~~l~h~~~d~-----~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
|++.... +..... .++++.+.+.|||||.+++..
T Consensus 377 Ii~D~~~-~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 377 IIVDLPD-PSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred EEEeCCC-CCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence 9997532 322111 468999999999999999975
No 152
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.14 E-value=6.9e-06 Score=84.72 Aligned_cols=101 Identities=15% Similarity=0.205 Sum_probs=69.9
Q ss_pred CEEEEeCCCCc----HHHHHHhhC--------CcEEEeCCccchHHHHHHH----HH------------Hc------C--
Q 009069 220 RTAIDTGCGVA----SWGAYLMSR--------NILAVSFAPRDTHEAQVQF----AL------------ER------G-- 263 (544)
Q Consensus 220 r~VLDIGCGtG----~~a~~La~~--------~V~~vdisp~dls~a~v~~----A~------------er------g-- 263 (544)
-+|+..||++| +++..|.+. .|.++||+...+..+..-. .. .+ +
T Consensus 117 irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~ 196 (287)
T PRK10611 117 YRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGLV 196 (287)
T ss_pred EEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCceE
Confidence 47999999999 555555552 3778888776655444310 00 00 0
Q ss_pred -------CCeEEEEeccccCCCC-CCCeeEEEecccccccccCh-HHHHHHHHHcccCCcEEEEEe
Q 009069 264 -------VPALIGVMASIRLPYP-SRAFDMAHCSRCLIPWGQYD-GLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 264 -------v~~~~~v~d~~~LPfp-d~sFDlV~~~~~l~h~~~d~-~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
-.+.|...+....+++ .+.||+|+|..+++|+.... ..++..+.+.|+|||+|++..
T Consensus 197 ~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 197 RVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred EEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 1135556666554443 57899999999999987644 789999999999999987763
No 153
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.14 E-value=1.1e-05 Score=78.71 Aligned_cols=103 Identities=25% Similarity=0.381 Sum_probs=61.5
Q ss_pred CCCEEEEeCCCCc----HHHHHHhhC---------CcEEEeCCccchHHHHHHH------------HHHc------C---
Q 009069 218 SIRTAIDTGCGVA----SWGAYLMSR---------NILAVSFAPRDTHEAQVQF------------ALER------G--- 263 (544)
Q Consensus 218 ~~r~VLDIGCGtG----~~a~~La~~---------~V~~vdisp~dls~a~v~~------------A~er------g--- 263 (544)
..-+|+..||++| +++..|.+. .|.++|+++..+..|..-. .+++ +
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 4457999999999 566666651 4677777665444333200 0000 0
Q ss_pred -------CCeEEEEeccccCCCCCCCeeEEEecccccccccCh-HHHHHHHHHcccCCcEEEEEe
Q 009069 264 -------VPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYD-GLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 264 -------v~~~~~v~d~~~LPfpd~sFDlV~~~~~l~h~~~d~-~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
-.+.|...+....+.+.+.||+|+|..+++.+.... ..++..+.+.|+|||+|++..
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 125677777666444567899999999999888754 789999999999999999974
No 154
>PLN02672 methionine S-methyltransferase
Probab=98.11 E-value=4.1e-05 Score=90.98 Aligned_cols=102 Identities=16% Similarity=0.130 Sum_probs=70.6
Q ss_pred CCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHc--------------C--CCeEEEEeccccCCC
Q 009069 219 IRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALER--------------G--VPALIGVMASIRLPY 278 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~er--------------g--v~~~~~v~d~~~LPf 278 (544)
+.+|||+|||+|.++..|+++ .++++|+++..+..+..+..... . .++.+..+|.... +
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~-~ 197 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGY-C 197 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhh-c
Confidence 347999999999999998874 48899998887766665544311 0 1367777776443 2
Q ss_pred CC--CCeeEEEecccccccc---------------------------------cCh----HHHHHHHHHcccCCcEEEEE
Q 009069 279 PS--RAFDMAHCSRCLIPWG---------------------------------QYD----GLYLIEVDRVLRPGGYWILS 319 (544)
Q Consensus 279 pd--~sFDlV~~~~~l~h~~---------------------------------~d~----~~~L~Ei~RVLKPGG~Lvis 319 (544)
.+ ..||+|+++.-.+.-. ++. ..++.++.++|+|||.+++.
T Consensus 198 ~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lE 277 (1082)
T PLN02672 198 RDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFN 277 (1082)
T ss_pred cccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 22 3699999965432110 111 46778888999999999998
Q ss_pred eC
Q 009069 320 GP 321 (544)
Q Consensus 320 ~p 321 (544)
..
T Consensus 278 iG 279 (1082)
T PLN02672 278 MG 279 (1082)
T ss_pred EC
Confidence 64
No 155
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.10 E-value=1.8e-05 Score=79.25 Aligned_cols=96 Identities=11% Similarity=0.075 Sum_probs=65.7
Q ss_pred CEEEEeCCCCcHHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEeccccC-C-----CCCCCeeEE
Q 009069 220 RTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIRL-P-----YPSRAFDMA 286 (544)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~-----~V~~vdisp~dls~a~v~~A~ergv--~~~~~v~d~~~L-P-----fpd~sFDlV 286 (544)
++|||+|||+|..+..|+.. .++++|+++.....+...++ +.++ .+.+..+|+... + .+.++||+|
T Consensus 70 ~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~-~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~V 148 (234)
T PLN02781 70 KNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIK-KAGVDHKINFIQSDALSALDQLLNNDPKPEFDFA 148 (234)
T ss_pred CEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHH-HcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCEE
Confidence 38999999999877766543 58888887765544444333 3444 367777775432 1 124689999
Q ss_pred EecccccccccChHHHHHHHHHcccCCcEEEEEe
Q 009069 287 HCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 287 ~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
+.-.- ......++.++.+.|||||.+++..
T Consensus 149 fiDa~----k~~y~~~~~~~~~ll~~GG~ii~dn 178 (234)
T PLN02781 149 FVDAD----KPNYVHFHEQLLKLVKVGGIIAFDN 178 (234)
T ss_pred EECCC----HHHHHHHHHHHHHhcCCCeEEEEEc
Confidence 87431 1222678999999999999988863
No 156
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=98.08 E-value=3e-05 Score=66.26 Aligned_cols=97 Identities=28% Similarity=0.411 Sum_probs=64.7
Q ss_pred EEEeCCCCcHHH--HHHhhC--CcEEEeCCccchHHHHHHHHHHcCCC-eEEEEecccc--CCCCC-CCeeEEEeccccc
Q 009069 222 AIDTGCGVASWG--AYLMSR--NILAVSFAPRDTHEAQVQFALERGVP-ALIGVMASIR--LPYPS-RAFDMAHCSRCLI 293 (544)
Q Consensus 222 VLDIGCGtG~~a--~~La~~--~V~~vdisp~dls~a~v~~A~ergv~-~~~~v~d~~~--LPfpd-~sFDlV~~~~~l~ 293 (544)
+||+|||+|... ..+... .+.++|+++.++......... .... +.+...+... +++.+ ..||++ +.....
T Consensus 52 ~ld~~~g~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~ 129 (257)
T COG0500 52 VLDIGCGTGRLALLARLGGRGAYVVGVDLSPEMLALARARAEG-AGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLVL 129 (257)
T ss_pred eEEecCCcCHHHHHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cCCCceEEEEeccccCCCCCCCCCceeEE-eeeeeh
Confidence 999999999854 333332 345556655544431111111 2222 4566666655 78877 589999 666665
Q ss_pred ccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 294 PWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 294 h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
++.. ....+.++.++|+|+|.+++...
T Consensus 130 ~~~~-~~~~~~~~~~~l~~~g~~~~~~~ 156 (257)
T COG0500 130 HLLP-PAKALRELLRVLKPGGRLVLSDL 156 (257)
T ss_pred hcCC-HHHHHHHHHHhcCCCcEEEEEec
Confidence 6665 78999999999999999999865
No 157
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.06 E-value=1.7e-05 Score=78.67 Aligned_cols=152 Identities=16% Similarity=0.176 Sum_probs=90.6
Q ss_pred HHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhCCc-EE--EeCCccchHHHHHHHHHHc----C---CCeEEEEec
Q 009069 203 AYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNI-LA--VSFAPRDTHEAQVQFALER----G---VPALIGVMA 272 (544)
Q Consensus 203 ~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~V-~~--vdisp~dls~a~v~~A~er----g---v~~~~~v~d 272 (544)
.+.+.+.+.-..+...+.+|||...|-|.++...+++|. .+ ++.++.-+ ++|.-+ + ..+.+..+|
T Consensus 119 P~~Dt~~Kv~~V~~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VL-----eLa~lNPwSr~l~~~~i~iilGD 193 (287)
T COG2521 119 PLEDTLAKVELVKVKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVL-----ELAKLNPWSRELFEIAIKIILGD 193 (287)
T ss_pred cHHHHHhhhheeccccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeE-----EeeccCCCCccccccccEEeccc
Confidence 344444444444455566999999999999999999865 44 44444333 333322 1 234666666
Q ss_pred cccC--CCCCCCeeEEEecccccccccCh--HHHHHHHHHcccCCcEEEEE-eCCCCccccccCCCcchhhhHhhhhhHH
Q 009069 273 SIRL--PYPSRAFDMAHCSRCLIPWGQYD--GLYLIEVDRVLRPGGYWILS-GPPVNWESHWKGWNRTTEDLKSEQNGIE 347 (544)
Q Consensus 273 ~~~L--Pfpd~sFDlV~~~~~l~h~~~d~--~~~L~Ei~RVLKPGG~Lvis-~pp~~w~~~~~~w~~t~e~L~~~~~~ie 347 (544)
+... .|+|.+||+|+--.-......+. +.+.+|++|+|||||.++=- +.|.. .+++ .+.+..+.
T Consensus 194 ~~e~V~~~~D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~---ryrG--------~d~~~gVa 262 (287)
T COG2521 194 AYEVVKDFDDESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGK---RYRG--------LDLPKGVA 262 (287)
T ss_pred HHHHHhcCCccccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCc---cccc--------CChhHHHH
Confidence 5443 37899999998522111111112 68999999999999988763 43332 1111 12344566
Q ss_pred HHHHhhcceeeeeec--cEEEEecc
Q 009069 348 TIARSLCWKKLIQKK--DLAIWQKP 370 (544)
Q Consensus 348 ~la~~l~w~~v~~~~--~~aIwqKP 370 (544)
+..++.+|..+.... .-.+.+||
T Consensus 263 ~RLr~vGF~~v~~~~~~~gv~A~k~ 287 (287)
T COG2521 263 ERLRRVGFEVVKKVREALGVVAVKP 287 (287)
T ss_pred HHHHhcCceeeeeehhccceEEecC
Confidence 778888998665332 23445554
No 158
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=98.06 E-value=7.7e-05 Score=76.25 Aligned_cols=155 Identities=15% Similarity=0.219 Sum_probs=95.7
Q ss_pred HHHHHHHHhcc--cCCCCCEEEEeCCCCcHHHHHHhhCCc--EEEeCCccchHHHHHHHHHHc----C------------
Q 009069 204 YIDDIGKLINL--KDGSIRTAIDTGCGVASWGAYLMSRNI--LAVSFAPRDTHEAQVQFALER----G------------ 263 (544)
Q Consensus 204 ~i~~L~~lL~l--~~g~~r~VLDIGCGtG~~a~~La~~~V--~~vdisp~dls~a~v~~A~er----g------------ 263 (544)
.++.|.++++. ......+||--|||.|+++..++.+|. .+.++|.-|+-. .++.+.. +
T Consensus 40 I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~Mll~--s~fiLn~~~~~~~~~I~Pf~~~~s 117 (270)
T PF07942_consen 40 ILDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYFMLLA--SNFILNHCSQPNQFTIYPFVHSFS 117 (270)
T ss_pred HHHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhccceEEEEEchHHHHHH--HHHHHcccCCCCcEEEecceeccc
Confidence 44566666652 222345799999999999999999864 455555544321 1233221 0
Q ss_pred -------------C-------------CeEEEEeccccCCCCC---CCeeEEEecccccccccChHHHHHHHHHcccCCc
Q 009069 264 -------------V-------------PALIGVMASIRLPYPS---RAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGG 314 (544)
Q Consensus 264 -------------v-------------~~~~~v~d~~~LPfpd---~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG 314 (544)
+ ......+|....-.++ ++||+|++.+.+ .-..+.-.+|..|.++|||||
T Consensus 118 n~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFI-DTA~Ni~~Yi~tI~~lLkpgG 196 (270)
T PF07942_consen 118 NQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFI-DTAENIIEYIETIEHLLKPGG 196 (270)
T ss_pred CCCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEe-echHHHHHHHHHHHHHhccCC
Confidence 0 1122223333332233 689999987644 444445789999999999999
Q ss_pred EEEEEeCCCCccccccCCCcchhhhHhhhhhHHHHHHhhcceeeeeecc
Q 009069 315 YWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQKKD 363 (544)
Q Consensus 315 ~Lvis~pp~~w~~~~~~w~~t~e~L~~~~~~ie~la~~l~w~~v~~~~~ 363 (544)
++|=.+|-. |.....+ ...+..++-.+++|..+++++||+.+.++..
T Consensus 197 ~WIN~GPLl-yh~~~~~-~~~~~sveLs~eEi~~l~~~~GF~~~~~~~~ 243 (270)
T PF07942_consen 197 YWINFGPLL-YHFEPMS-IPNEMSVELSLEEIKELIEKLGFEIEKEESS 243 (270)
T ss_pred EEEecCCcc-ccCCCCC-CCCCcccCCCHHHHHHHHHHCCCEEEEEEEe
Confidence 887777733 2222110 1222235666888999999999998876543
No 159
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.02 E-value=4.8e-05 Score=79.72 Aligned_cols=95 Identities=17% Similarity=0.275 Sum_probs=60.7
Q ss_pred cHHHHHHHHHHHhccc------CCCCCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCC--eE
Q 009069 200 GADAYIDDIGKLINLK------DGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGVP--AL 267 (544)
Q Consensus 200 ga~~~i~~L~~lL~l~------~g~~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv~--~~ 267 (544)
+.-.|+..+.+++... .+...++||||||+|.+...|+.+ .++++|+++..+..++...+...++. +.
T Consensus 90 ~R~~Yi~~l~dll~~~~~~~~p~~~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~ 169 (321)
T PRK11727 90 GRADYIHHLADLLAEDNGGVIPRGANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIR 169 (321)
T ss_pred cHHHHHHHHHHHhcccccccCCCCCCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEE
Confidence 3566777777776421 234568999999999887777654 58889998877766665554431332 33
Q ss_pred EEE-eccccCC----CCCCCeeEEEecccccc
Q 009069 268 IGV-MASIRLP----YPSRAFDMAHCSRCLIP 294 (544)
Q Consensus 268 ~~v-~d~~~LP----fpd~sFDlV~~~~~l~h 294 (544)
+.. .+...+. .+++.||+|+|+.-++.
T Consensus 170 ~~~~~~~~~i~~~i~~~~~~fDlivcNPPf~~ 201 (321)
T PRK11727 170 LRLQKDSKAIFKGIIHKNERFDATLCNPPFHA 201 (321)
T ss_pred EEEccchhhhhhcccccCCceEEEEeCCCCcC
Confidence 432 2222211 24678999999995543
No 160
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.01 E-value=3.6e-05 Score=73.50 Aligned_cols=101 Identities=15% Similarity=0.126 Sum_probs=59.8
Q ss_pred CCCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcC----CCeEEEEecccc-C---CCCCCCeeE
Q 009069 218 SIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERG----VPALIGVMASIR-L---PYPSRAFDM 285 (544)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~erg----v~~~~~v~d~~~-L---Pfpd~sFDl 285 (544)
.+.+|||+|||+|..+..++.. .|+.+|..+ .-+.....+..++ ..+.+...+-.. . ......||+
T Consensus 45 ~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~--~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~ 122 (173)
T PF10294_consen 45 RGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE--VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDV 122 (173)
T ss_dssp TTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S---HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSE
T ss_pred CCceEEEECCccchhHHHHHhccCCceEEEeccch--hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCE
Confidence 4568999999999877777665 688889866 3233333333322 234444443211 1 123468999
Q ss_pred EEecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 286 AHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 286 V~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
|+++.++. .......++.-+.++|+|+|.+++..+
T Consensus 123 IlasDv~Y-~~~~~~~L~~tl~~ll~~~~~vl~~~~ 157 (173)
T PF10294_consen 123 ILASDVLY-DEELFEPLVRTLKRLLKPNGKVLLAYK 157 (173)
T ss_dssp EEEES--S--GGGHHHHHHHHHHHBTT-TTEEEEEE
T ss_pred EEEecccc-hHHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 99999984 444448899999999999999777754
No 161
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.00 E-value=2.3e-05 Score=90.29 Aligned_cols=102 Identities=15% Similarity=0.122 Sum_probs=71.8
Q ss_pred CCEEEEeCCCCcHHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCC---CeEEEEeccccC-CCCCCCeeEEEeccc
Q 009069 219 IRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERGV---PALIGVMASIRL-PYPSRAFDMAHCSRC 291 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~---~V~~vdisp~dls~a~v~~A~ergv---~~~~~v~d~~~L-Pfpd~sFDlV~~~~~ 291 (544)
+++|||+|||+|.++..++.. .|+++|+++..+..++.++.. +++ .+.+..+|.... .-..++||+|++..-
T Consensus 539 g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~-ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP 617 (702)
T PRK11783 539 GKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFAL-NGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPP 617 (702)
T ss_pred CCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH-hCCCccceEEEEccHHHHHHHcCCCcCEEEECCC
Confidence 358999999999999999876 378889988777666655443 343 467788775432 111568999999642
Q ss_pred ccccc----------cChHHHHHHHHHcccCCcEEEEEeC
Q 009069 292 LIPWG----------QYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 292 l~h~~----------~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
...-. .+...++..+.++|+|||.|+++..
T Consensus 618 ~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~ 657 (702)
T PRK11783 618 TFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNN 657 (702)
T ss_pred CCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 21111 1114678888999999999999865
No 162
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.00 E-value=3.9e-05 Score=82.63 Aligned_cols=102 Identities=10% Similarity=0.007 Sum_probs=68.6
Q ss_pred CCEEEEeCCCCcHHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCC---CeEEEEeccccCC----CCCCCeeEEEe
Q 009069 219 IRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERGV---PALIGVMASIRLP----YPSRAFDMAHC 288 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~---~V~~vdisp~dls~a~v~~A~ergv---~~~~~v~d~~~LP----fpd~sFDlV~~ 288 (544)
+.+|||+|||+|.++..++.. .++++|+++..+..+..+++ .+++ .+.+..+|+...- -..++||+|++
T Consensus 221 g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~-~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVil 299 (396)
T PRK15128 221 NKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVE-LNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVM 299 (396)
T ss_pred CCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHH-HcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEE
Confidence 458999999999998776544 47889998877765554443 3444 4677778765431 13568999999
Q ss_pred ccccccccc--------ChHHHHHHHHHcccCCcEEEEEeC
Q 009069 289 SRCLIPWGQ--------YDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 289 ~~~l~h~~~--------d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
..-...-.. .-..++..+.++|+|||.|++...
T Consensus 300 DPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~sc 340 (396)
T PRK15128 300 DPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSC 340 (396)
T ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 753311110 013445567899999999998753
No 163
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=97.96 E-value=0.0001 Score=74.57 Aligned_cols=106 Identities=18% Similarity=0.256 Sum_probs=71.1
Q ss_pred HHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEeccccCCCC
Q 009069 207 DIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIRLPYP 279 (544)
Q Consensus 207 ~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-----~V~~vdisp~dls~a~v~~A~ergv--~~~~~v~d~~~LPfp 279 (544)
.|...+.+.+|+ +|||.|.|+|+++.+|++. .+...++-......++.++. ..++ .+.+...|.....|.
T Consensus 31 ~I~~~l~i~pG~--~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~-~~gl~~~v~~~~~Dv~~~g~~ 107 (247)
T PF08704_consen 31 YILMRLDIRPGS--RVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFE-RHGLDDNVTVHHRDVCEEGFD 107 (247)
T ss_dssp HHHHHTT--TT---EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHH-HTTCCTTEEEEES-GGCG--S
T ss_pred HHHHHcCCCCCC--EEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHH-HcCCCCCceeEecceeccccc
Confidence 456666777776 9999999999999999864 46777775544433443333 3344 477888887665553
Q ss_pred ---CCCeeEEEecccccccccChHHHHHHHHHcc-cCCcEEEEEeC
Q 009069 280 ---SRAFDMAHCSRCLIPWGQYDGLYLIEVDRVL-RPGGYWILSGP 321 (544)
Q Consensus 280 ---d~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVL-KPGG~Lvis~p 321 (544)
++.||.|+. .++ +|-.++..+.++| ||||.++.-.|
T Consensus 108 ~~~~~~~DavfL-----Dlp-~Pw~~i~~~~~~L~~~gG~i~~fsP 147 (247)
T PF08704_consen 108 EELESDFDAVFL-----DLP-DPWEAIPHAKRALKKPGGRICCFSP 147 (247)
T ss_dssp TT-TTSEEEEEE-----ESS-SGGGGHHHHHHHE-EEEEEEEEEES
T ss_pred ccccCcccEEEE-----eCC-CHHHHHHHHHHHHhcCCceEEEECC
Confidence 367999986 344 3678899999999 99999999887
No 164
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=97.96 E-value=5.4e-05 Score=80.96 Aligned_cols=99 Identities=13% Similarity=0.049 Sum_probs=67.7
Q ss_pred CEEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEeccccCC-CCCCCeeEEEeccccccc
Q 009069 220 RTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRLP-YPSRAFDMAHCSRCLIPW 295 (544)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~A~ergv-~~~~~v~d~~~LP-fpd~sFDlV~~~~~l~h~ 295 (544)
.+|||+|||+|.++..++.+ .++++|+++..+..+.. .+...++ ++.+..+|..... ...++||+|+...-.
T Consensus 235 ~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~~-N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr--- 310 (374)
T TIGR02085 235 TQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQQ-SAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPPR--- 310 (374)
T ss_pred CEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHHH-HHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCCC---
Confidence 48999999999999999876 57788887766654443 3334454 5778888865432 122469999987643
Q ss_pred ccChHHHHHHHHHcccCCcEEEEEeCCC
Q 009069 296 GQYDGLYLIEVDRVLRPGGYWILSGPPV 323 (544)
Q Consensus 296 ~~d~~~~L~Ei~RVLKPGG~Lvis~pp~ 323 (544)
..-...++..+. .++|++.++++..|.
T Consensus 311 ~G~~~~~l~~l~-~~~p~~ivyvsc~p~ 337 (374)
T TIGR02085 311 RGIGKELCDYLS-QMAPKFILYSSCNAQ 337 (374)
T ss_pred CCCcHHHHHHHH-hcCCCeEEEEEeCHH
Confidence 211245555554 479999999996643
No 165
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.90 E-value=4.1e-05 Score=85.01 Aligned_cols=102 Identities=13% Similarity=0.096 Sum_probs=74.0
Q ss_pred CCCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEeccccC--CCCCCCeeEEEecc
Q 009069 218 SIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRL--PYPSRAFDMAHCSR 290 (544)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv-~~~~~v~d~~~L--Pfpd~sFDlV~~~~ 290 (544)
....+||||||.|.+...++.. ++.++++...-+..+. +.+.+.++ ++.+...++..+ -++++++|.|+.++
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~-~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~F 425 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVL-KLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILF 425 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHH-HHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEEC
Confidence 4568999999999999999876 6888888665444333 33444555 455554454322 27789999999876
Q ss_pred cccccccCh--------HHHHHHHHHcccCCcEEEEEeC
Q 009069 291 CLIPWGQYD--------GLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 291 ~l~h~~~d~--------~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
.= +|+... ..++..+.++|||||.+.+.+.
T Consensus 426 PD-PWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD 463 (506)
T PRK01544 426 PD-PWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASD 463 (506)
T ss_pred CC-CCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcC
Confidence 44 776533 4899999999999999999853
No 166
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=97.90 E-value=6.1e-05 Score=79.02 Aligned_cols=111 Identities=20% Similarity=0.210 Sum_probs=77.3
Q ss_pred HHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhCCcEEEeCCccchHHHHHHHHHHc----CC-Ce-EEEEeccccCCCC
Q 009069 206 DDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER----GV-PA-LIGVMASIRLPYP 279 (544)
Q Consensus 206 ~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~V~~vdisp~dls~a~v~~A~er----gv-~~-~~~v~d~~~LPfp 279 (544)
..+.++...+.|+ .|||-=||||++.....-.|+.+++. |+...+++-|+.+ ++ +. .+...|+..+|++
T Consensus 187 R~mVNLa~v~~G~--~vlDPFcGTGgiLiEagl~G~~viG~---Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~ 261 (347)
T COG1041 187 RAMVNLARVKRGE--LVLDPFCGTGGILIEAGLMGARVIGS---DIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLR 261 (347)
T ss_pred HHHHHHhccccCC--EeecCcCCccHHHHhhhhcCceEeec---chHHHHHhhhhhhhhhhCcCceeEEEecccccCCCC
Confidence 3445555555555 89999999999988877666666555 5566666555433 22 23 2344499999999
Q ss_pred CCCeeEEEeccccc-----ccc--cCh-HHHHHHHHHcccCCcEEEEEeC
Q 009069 280 SRAFDMAHCSRCLI-----PWG--QYD-GLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 280 d~sFDlV~~~~~l~-----h~~--~d~-~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
+++||.|.+-.-.- .-. ++. ..+|..+.++||+||++++..|
T Consensus 262 ~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 262 DNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred CCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 99999999833110 111 111 6889999999999999999987
No 167
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=97.87 E-value=7.1e-06 Score=83.46 Aligned_cols=96 Identities=22% Similarity=0.268 Sum_probs=69.2
Q ss_pred CCEEEEeCCCCcHHHHHHhhCCcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEecccccccccC
Q 009069 219 IRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQY 298 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~sFDlV~~~~~l~h~~~d 298 (544)
+..+||+|||.|-.+.---.-.+.+.|+ ....+..++..+.. ...++|+..+|+.+.+||.+++..++||+...
T Consensus 46 gsv~~d~gCGngky~~~~p~~~~ig~D~-----c~~l~~~ak~~~~~-~~~~ad~l~~p~~~~s~d~~lsiavihhlsT~ 119 (293)
T KOG1331|consen 46 GSVGLDVGCGNGKYLGVNPLCLIIGCDL-----CTGLLGGAKRSGGD-NVCRADALKLPFREESFDAALSIAVIHHLSTR 119 (293)
T ss_pred cceeeecccCCcccCcCCCcceeeecch-----hhhhccccccCCCc-eeehhhhhcCCCCCCccccchhhhhhhhhhhH
Confidence 4489999999996432111113444444 33344444444432 56778999999999999999999999999875
Q ss_pred h--HHHHHHHHHcccCCcEEEEEe
Q 009069 299 D--GLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 299 ~--~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
. ..+++|+.|+|||||...+-.
T Consensus 120 ~RR~~~l~e~~r~lrpgg~~lvyv 143 (293)
T KOG1331|consen 120 ERRERALEELLRVLRPGGNALVYV 143 (293)
T ss_pred HHHHHHHHHHHHHhcCCCceEEEE
Confidence 5 689999999999999877653
No 168
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=97.84 E-value=5.9e-05 Score=76.50 Aligned_cols=85 Identities=18% Similarity=0.203 Sum_probs=59.8
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCC
Q 009069 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYP 279 (544)
Q Consensus 202 ~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfp 279 (544)
...++.+.+.+....+ .+|||||||+|.++..|+++ .++++|+++.++......+.. ..++.+..+|...++++
T Consensus 15 ~~~~~~iv~~~~~~~~--~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~~~--~~~v~ii~~D~~~~~~~ 90 (258)
T PRK14896 15 DRVVDRIVEYAEDTDG--DPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEIA--AGNVEIIEGDALKVDLP 90 (258)
T ss_pred HHHHHHHHHhcCCCCc--CeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHhcc--CCCEEEEEeccccCCch
Confidence 3455667776655544 48999999999999999987 477788866555433322211 23577888898887765
Q ss_pred CCCeeEEEecccc
Q 009069 280 SRAFDMAHCSRCL 292 (544)
Q Consensus 280 d~sFDlV~~~~~l 292 (544)
.||.|+++..+
T Consensus 91 --~~d~Vv~NlPy 101 (258)
T PRK14896 91 --EFNKVVSNLPY 101 (258)
T ss_pred --hceEEEEcCCc
Confidence 48999998865
No 169
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=97.83 E-value=9.2e-05 Score=77.46 Aligned_cols=95 Identities=23% Similarity=0.241 Sum_probs=70.5
Q ss_pred CCEEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCCeEEEEecc-ccCCCCCCCeeEEEeccccccc
Q 009069 219 IRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGVPALIGVMAS-IRLPYPSRAFDMAHCSRCLIPW 295 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~-~~LPfpd~sFDlV~~~~~l~h~ 295 (544)
....+|+|.|.|..+..+... .+.+++++...+.+++...+ .| +....+|. +..| . -|+|++-.++|||
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~--~g--V~~v~gdmfq~~P--~--~daI~mkWiLhdw 249 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLA--PG--VEHVAGDMFQDTP--K--GDAIWMKWILHDW 249 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhc--CC--cceecccccccCC--C--cCeEEEEeecccC
Confidence 468999999999999998875 67788885544433333332 23 34444443 3344 3 3599999999999
Q ss_pred ccCh-HHHHHHHHHcccCCcEEEEEeC
Q 009069 296 GQYD-GLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 296 ~~d~-~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
.++. ..+|+++...|+|||.+++...
T Consensus 250 tDedcvkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 250 TDEDCVKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred ChHHHHHHHHHHHHhCCCCCEEEEEec
Confidence 9877 8999999999999999999864
No 170
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=97.81 E-value=0.00035 Score=69.41 Aligned_cols=97 Identities=15% Similarity=0.204 Sum_probs=67.8
Q ss_pred CCEEEEeCCCCcHHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCC--eEEEE-ecccc-CC-CCCCCeeEEEe
Q 009069 219 IRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGVP--ALIGV-MASIR-LP-YPSRAFDMAHC 288 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~-----~V~~vdisp~dls~a~v~~A~ergv~--~~~~v-~d~~~-LP-fpd~sFDlV~~ 288 (544)
.++||+||.+.|..+..|+.. .++++|+++.....++..+++ -|+. +.+.. +|+.. +. ...++||+|+.
T Consensus 60 ~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~-ag~~~~i~~~~~gdal~~l~~~~~~~fDliFI 138 (219)
T COG4122 60 PKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAE-AGVDDRIELLLGGDALDVLSRLLDGSFDLVFI 138 (219)
T ss_pred CceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHH-cCCcceEEEEecCcHHHHHHhccCCCccEEEE
Confidence 348999999999999888764 378888877666555554443 3442 44444 34322 22 45789999985
Q ss_pred cccccccccChHHHHHHHHHcccCCcEEEEEe
Q 009069 289 SRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 289 ~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
- +...+-..+|..+.++|||||.+++..
T Consensus 139 D----adK~~yp~~le~~~~lLr~GGliv~DN 166 (219)
T COG4122 139 D----ADKADYPEYLERALPLLRPGGLIVADN 166 (219)
T ss_pred e----CChhhCHHHHHHHHHHhCCCcEEEEee
Confidence 3 333333789999999999999999973
No 171
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=97.79 E-value=0.00022 Score=72.35 Aligned_cols=120 Identities=16% Similarity=0.171 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHhccc-CCCCCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCC--eEEEEe--
Q 009069 201 ADAYIDDIGKLINLK-DGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGVP--ALIGVM-- 271 (544)
Q Consensus 201 a~~~i~~L~~lL~l~-~g~~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv~--~~~~v~-- 271 (544)
.++.++.+.+.+... ......+||+|||+|..+..|+.. .++++|.+...+.-+.. .+....+. +.+...
T Consensus 130 TEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~e-N~qr~~l~g~i~v~~~~m 208 (328)
T KOG2904|consen 130 TEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKE-NAQRLKLSGRIEVIHNIM 208 (328)
T ss_pred HHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHH-HHHHHhhcCceEEEeccc
Confidence 455666666655421 122337999999999988888764 56777776554432221 12111222 222211
Q ss_pred --c-cccCCCCCCCeeEEEecccccccccCh-------------------------HHHHHHHHHcccCCcEEEEEeC
Q 009069 272 --A-SIRLPYPSRAFDMAHCSRCLIPWGQYD-------------------------GLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 272 --d-~~~LPfpd~sFDlV~~~~~l~h~~~d~-------------------------~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
+ ....+...+.+|+++|+.-.+.-.+.. ..++.-+.|.|+|||.+++...
T Consensus 209 e~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~ 286 (328)
T KOG2904|consen 209 ESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELV 286 (328)
T ss_pred ccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEec
Confidence 1 233445678999999987543222111 1456778999999999999864
No 172
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=97.79 E-value=0.00014 Score=73.44 Aligned_cols=83 Identities=16% Similarity=0.207 Sum_probs=56.2
Q ss_pred HHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCC
Q 009069 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSR 281 (544)
Q Consensus 204 ~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~ 281 (544)
.++.+.+.+....+ .+|||||||+|.++..|+++ .++++|+++.++......+. ....+.+..+|+..++++
T Consensus 17 i~~~i~~~~~~~~~--~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~~~l~~~~~--~~~~v~v~~~D~~~~~~~-- 90 (253)
T TIGR00755 17 VIQKIVEAANVLEG--DVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLAEILRKLLS--LYERLEVIEGDALKVDLP-- 90 (253)
T ss_pred HHHHHHHhcCCCCc--CEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHHHHHHHHhC--cCCcEEEEECchhcCChh--
Confidence 44566666654443 48999999999999999986 57778886655433332221 123577888888888765
Q ss_pred Cee---EEEecccc
Q 009069 282 AFD---MAHCSRCL 292 (544)
Q Consensus 282 sFD---lV~~~~~l 292 (544)
+|| +|+++..+
T Consensus 91 ~~d~~~~vvsNlPy 104 (253)
T TIGR00755 91 DFPKQLKVVSNLPY 104 (253)
T ss_pred HcCCcceEEEcCCh
Confidence 466 88877644
No 173
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=97.75 E-value=7.5e-05 Score=76.39 Aligned_cols=83 Identities=14% Similarity=0.091 Sum_probs=58.7
Q ss_pred HHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCC
Q 009069 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSR 281 (544)
Q Consensus 204 ~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~ 281 (544)
.++.+.+.+....+ .+|||||||+|.++..|+++ .++++|+++.++......+. ...+.+..+|...+++++-
T Consensus 30 i~~~i~~~l~~~~~--~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~~~~---~~~v~~i~~D~~~~~~~~~ 104 (272)
T PRK00274 30 ILDKIVDAAGPQPG--DNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAETFA---EDNLTIIEGDALKVDLSEL 104 (272)
T ss_pred HHHHHHHhcCCCCc--CeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHHhhc---cCceEEEEChhhcCCHHHc
Confidence 45566666655444 48999999999999999987 57888887765544332221 1467888889888877653
Q ss_pred CeeEEEeccc
Q 009069 282 AFDMAHCSRC 291 (544)
Q Consensus 282 sFDlV~~~~~ 291 (544)
.+|.|+++.-
T Consensus 105 ~~~~vv~NlP 114 (272)
T PRK00274 105 QPLKVVANLP 114 (272)
T ss_pred CcceEEEeCC
Confidence 3688888763
No 174
>PLN02476 O-methyltransferase
Probab=97.74 E-value=0.00016 Score=74.30 Aligned_cols=96 Identities=14% Similarity=0.117 Sum_probs=66.7
Q ss_pred CEEEEeCCCCcHHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEecccc-CC-C----CCCCeeEE
Q 009069 220 RTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIR-LP-Y----PSRAFDMA 286 (544)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~-----~V~~vdisp~dls~a~v~~A~ergv--~~~~~v~d~~~-LP-f----pd~sFDlV 286 (544)
++|||||+|+|..+..++.. .++++|.++.....+...+ .+.|+ .+.+..+++.. |+ + .+++||+|
T Consensus 120 k~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~-~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~V 198 (278)
T PLN02476 120 ERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYY-ELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDFA 198 (278)
T ss_pred CeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHH-HHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCEE
Confidence 48999999999999988863 3688888775554444333 34455 46777776533 22 1 24689999
Q ss_pred EecccccccccChHHHHHHHHHcccCCcEEEEEe
Q 009069 287 HCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 287 ~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
+.-. ...+-..++..+.+.|+|||.+++..
T Consensus 199 FIDa----~K~~Y~~y~e~~l~lL~~GGvIV~DN 228 (278)
T PLN02476 199 FVDA----DKRMYQDYFELLLQLVRVGGVIVMDN 228 (278)
T ss_pred EECC----CHHHHHHHHHHHHHhcCCCcEEEEec
Confidence 8643 22223688999999999999998863
No 175
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=97.74 E-value=5.3e-05 Score=80.58 Aligned_cols=97 Identities=19% Similarity=0.258 Sum_probs=72.8
Q ss_pred EEEEeCCCCcHHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEeccccCCCCCCCeeEEEeccccccc
Q 009069 221 TAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIRLPYPSRAFDMAHCSRCLIPW 295 (544)
Q Consensus 221 ~VLDIGCGtG~~a~~La~~---~V~~vdisp~dls~a~v~~A~ergv--~~~~~v~d~~~LPfpd~sFDlV~~~~~l~h~ 295 (544)
.++|+|||.|....++... ++.+++.++..+......... .++ ...+...+....||++++||.+.+..+..|.
T Consensus 113 ~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~-~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~~~~~ 191 (364)
T KOG1269|consen 113 KVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKK-AYLDNKCNFVVADFGKMPFEDNTFDGVRFLEVVCHA 191 (364)
T ss_pred cccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHH-HHhhhhcceehhhhhcCCCCccccCcEEEEeecccC
Confidence 7999999999888887764 566555544433333322221 122 2344677888999999999999999999776
Q ss_pred ccChHHHHHHHHHcccCCcEEEEE
Q 009069 296 GQYDGLYLIEVDRVLRPGGYWILS 319 (544)
Q Consensus 296 ~~d~~~~L~Ei~RVLKPGG~Lvis 319 (544)
+. ...++.|+.|+++|||+++..
T Consensus 192 ~~-~~~~y~Ei~rv~kpGG~~i~~ 214 (364)
T KOG1269|consen 192 PD-LEKVYAEIYRVLKPGGLFIVK 214 (364)
T ss_pred Cc-HHHHHHHHhcccCCCceEEeH
Confidence 64 899999999999999999986
No 176
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=97.72 E-value=0.00034 Score=67.25 Aligned_cols=107 Identities=21% Similarity=0.344 Sum_probs=69.0
Q ss_pred HHHHHhcccCCCCCEEEEeCCCCcHHHHHHhh--CC-----------cEEEeCCccchHHHHHHHHHHcCC--CeEEEEe
Q 009069 207 DIGKLINLKDGSIRTAIDTGCGVASWGAYLMS--RN-----------ILAVSFAPRDTHEAQVQFALERGV--PALIGVM 271 (544)
Q Consensus 207 ~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~--~~-----------V~~vdisp~dls~a~v~~A~ergv--~~~~~v~ 271 (544)
.+..+...+.+. .|||--||+|++....+. .+ +.+.|+++..+..+..+.. ..++ .+.+...
T Consensus 19 ~ll~la~~~~~~--~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~-~ag~~~~i~~~~~ 95 (179)
T PF01170_consen 19 ALLNLAGWRPGD--VVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLK-AAGVEDYIDFIQW 95 (179)
T ss_dssp HHHHHTT--TTS---EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHH-HTT-CGGEEEEE-
T ss_pred HHHHHhCCCCCC--EEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHH-hcccCCceEEEec
Confidence 344554444444 899999999998866543 23 4589998887765555433 3344 3678888
Q ss_pred ccccCCCCCCCeeEEEecccccccccCh----------HHHHHHHHHcccCCcEEEEE
Q 009069 272 ASIRLPYPSRAFDMAHCSRCLIPWGQYD----------GLYLIEVDRVLRPGGYWILS 319 (544)
Q Consensus 272 d~~~LPfpd~sFDlV~~~~~l~h~~~d~----------~~~L~Ei~RVLKPGG~Lvis 319 (544)
|+..+++.++++|.|+++. +|.... ..+++++.|+|++...+++.
T Consensus 96 D~~~l~~~~~~~d~IvtnP---PyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~ 150 (179)
T PF01170_consen 96 DARELPLPDGSVDAIVTNP---PYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTT 150 (179)
T ss_dssp -GGGGGGTTSBSCEEEEE-----STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEE
T ss_pred chhhcccccCCCCEEEECc---chhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Confidence 9999998889999999987 443211 36789999999995555555
No 177
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.72 E-value=0.00034 Score=67.64 Aligned_cols=89 Identities=17% Similarity=0.063 Sum_probs=59.7
Q ss_pred CCCCEEEEeCCCCcHHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEeccccc
Q 009069 217 GSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLI 293 (544)
Q Consensus 217 g~~r~VLDIGCGtG~~a~~La~~---~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~sFDlV~~~~~l~ 293 (544)
-++++|+|+|||||.++...+-. .|.++|+++..+ +...+.+.+.+..+.+.+.|..+.. ..||.|+.+.-+-
T Consensus 44 l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~-ei~r~N~~~l~g~v~f~~~dv~~~~---~~~dtvimNPPFG 119 (198)
T COG2263 44 LEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEAL-EIARANAEELLGDVEFVVADVSDFR---GKFDTVIMNPPFG 119 (198)
T ss_pred cCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHH-HHHHHHHHhhCCceEEEEcchhhcC---CccceEEECCCCc
Confidence 35668999999999776655443 689999988655 3444455555567899988887754 5689999887543
Q ss_pred ccccCh-HHHHHHHHHc
Q 009069 294 PWGQYD-GLYLIEVDRV 309 (544)
Q Consensus 294 h~~~d~-~~~L~Ei~RV 309 (544)
-+.... ..++..+.++
T Consensus 120 ~~~rhaDr~Fl~~Ale~ 136 (198)
T COG2263 120 SQRRHADRPFLLKALEI 136 (198)
T ss_pred cccccCCHHHHHHHHHh
Confidence 232211 4555555554
No 178
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=97.69 E-value=0.00043 Score=68.29 Aligned_cols=117 Identities=18% Similarity=0.170 Sum_probs=76.5
Q ss_pred CEEEEeCCCCcHHHHHHhh-CCcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCC---CCCeeEEEeccccccc
Q 009069 220 RTAIDTGCGVASWGAYLMS-RNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYP---SRAFDMAHCSRCLIPW 295 (544)
Q Consensus 220 r~VLDIGCGtG~~a~~La~-~~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfp---d~sFDlV~~~~~l~h~ 295 (544)
-++|||||=+......-.. ..|+.+|+.+.. -.+.+.|....|.| ++.||+|.|+.+|...
T Consensus 53 lrlLEVGals~~N~~s~~~~fdvt~IDLns~~---------------~~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfV 117 (219)
T PF11968_consen 53 LRLLEVGALSTDNACSTSGWFDVTRIDLNSQH---------------PGILQQDFMERPLPKNESEKFDVISLSLVLNFV 117 (219)
T ss_pred ceEEeecccCCCCcccccCceeeEEeecCCCC---------------CCceeeccccCCCCCCcccceeEEEEEEEEeeC
Confidence 4799999975543322211 257777774421 12344566666654 6789999999999655
Q ss_pred ccCh---HHHHHHHHHcccCCcE-----EEEEeCCCCccccccCCCcchhhhHhhhhhHHHHHHhhcceeeeeec
Q 009069 296 GQYD---GLYLIEVDRVLRPGGY-----WILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQKK 362 (544)
Q Consensus 296 ~~d~---~~~L~Ei~RVLKPGG~-----Lvis~pp~~w~~~~~~w~~t~e~L~~~~~~ie~la~~l~w~~v~~~~ 362 (544)
+ ++ ..++..+.+.|+|+|. |+|+.|..-- .+. . +- ..+.+..+.+.+||..+..+.
T Consensus 118 P-~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv-~NS-R-y~-------~~~~l~~im~~LGf~~~~~~~ 181 (219)
T PF11968_consen 118 P-DPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCV-TNS-R-YM-------TEERLREIMESLGFTRVKYKK 181 (219)
T ss_pred C-CHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchHh-hcc-c-cc-------CHHHHHHHHHhCCcEEEEEEe
Confidence 5 35 7899999999999999 8888762110 000 0 01 124567889999998887543
No 179
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=97.69 E-value=0.00025 Score=69.84 Aligned_cols=96 Identities=18% Similarity=0.215 Sum_probs=66.5
Q ss_pred CEEEEeCCCCcHHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEecccc-CC-----CCCCCeeEE
Q 009069 220 RTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIR-LP-----YPSRAFDMA 286 (544)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~-----~V~~vdisp~dls~a~v~~A~ergv--~~~~~v~d~~~-LP-----fpd~sFDlV 286 (544)
++||+||+++|..+..|++. .++++++++.....++ +...+.|. .+.+..+++.. ++ ...++||+|
T Consensus 47 k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~-~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~V 125 (205)
T PF01596_consen 47 KRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIAR-ENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDFV 125 (205)
T ss_dssp SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHH-HHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEEE
T ss_pred ceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHH-HHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeEE
Confidence 38999999999999999864 5788888775443333 33344444 47777777543 12 124689999
Q ss_pred EecccccccccChHHHHHHHHHcccCCcEEEEEe
Q 009069 287 HCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 287 ~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
+.-. ...+-..++..+.+.|+|||.+++..
T Consensus 126 FiDa----~K~~y~~y~~~~~~ll~~ggvii~DN 155 (205)
T PF01596_consen 126 FIDA----DKRNYLEYFEKALPLLRPGGVIIADN 155 (205)
T ss_dssp EEES----TGGGHHHHHHHHHHHEEEEEEEEEET
T ss_pred EEcc----cccchhhHHHHHhhhccCCeEEEEcc
Confidence 8643 22223678999999999999999984
No 180
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=97.65 E-value=0.00034 Score=72.55 Aligned_cols=86 Identities=17% Similarity=0.267 Sum_probs=60.8
Q ss_pred HHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHHHHHc-CCCeEEEEeccccCCCC
Q 009069 203 AYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALER-GVPALIGVMASIRLPYP 279 (544)
Q Consensus 203 ~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~A~er-gv~~~~~v~d~~~LPfp 279 (544)
..++.+.+.+....+. +|||||||+|.++..|++. .++++|+++.++......++... ..++.+..+|+...+++
T Consensus 23 ~i~~~Iv~~~~~~~~~--~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~~ 100 (294)
T PTZ00338 23 LVLDKIVEKAAIKPTD--TVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEFP 100 (294)
T ss_pred HHHHHHHHhcCCCCcC--EEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhccc
Confidence 3556676666555444 8999999999999999886 58888888766654444333221 23577888888776653
Q ss_pred CCCeeEEEecccc
Q 009069 280 SRAFDMAHCSRCL 292 (544)
Q Consensus 280 d~sFDlV~~~~~l 292 (544)
.||+|+++.-+
T Consensus 101 --~~d~VvaNlPY 111 (294)
T PTZ00338 101 --YFDVCVANVPY 111 (294)
T ss_pred --ccCEEEecCCc
Confidence 68999987754
No 181
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=97.64 E-value=0.00025 Score=72.55 Aligned_cols=103 Identities=20% Similarity=0.241 Sum_probs=68.6
Q ss_pred CCCEEEEeCCCCc----HHHHHHhhC---------CcEEEeCCccchHHHHHH----HHHHcCC----------------
Q 009069 218 SIRTAIDTGCGVA----SWGAYLMSR---------NILAVSFAPRDTHEAQVQ----FALERGV---------------- 264 (544)
Q Consensus 218 ~~r~VLDIGCGtG----~~a~~La~~---------~V~~vdisp~dls~a~v~----~A~ergv---------------- 264 (544)
..-+|+-.||++| ++|..|.+. .|.++||+...+..|..- ....+++
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 3557999999999 555555543 467778866555443321 0000111
Q ss_pred ---------CeEEEEeccccCCCCCCCeeEEEecccccccccCh-HHHHHHHHHcccCCcEEEEEe
Q 009069 265 ---------PALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYD-GLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 265 ---------~~~~~v~d~~~LPfpd~sFDlV~~~~~l~h~~~d~-~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
.+.|...+....++..+.||+|+|..+++.+.... ..++..++..|+|||+|++-.
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~ 241 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGH 241 (268)
T ss_pred EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEcc
Confidence 13344444433343556799999999998888644 789999999999999999964
No 182
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=97.64 E-value=0.00092 Score=68.67 Aligned_cols=141 Identities=21% Similarity=0.315 Sum_probs=93.9
Q ss_pred CCCCEEEEeCCCCcHHHHHHhhC------CcEEEeCCccchHHHHHHHHHHcCCC--eEEEEeccccC---CCCCCCeeE
Q 009069 217 GSIRTAIDTGCGVASWGAYLMSR------NILAVSFAPRDTHEAQVQFALERGVP--ALIGVMASIRL---PYPSRAFDM 285 (544)
Q Consensus 217 g~~r~VLDIGCGtG~~a~~La~~------~V~~vdisp~dls~a~v~~A~ergv~--~~~~v~d~~~L---Pfpd~sFDl 285 (544)
+..-+||||.||.|......++. .+...|+++..+...+ +.+.++|.. +.|..+|+... .--+-..++
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~-~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l 212 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGR-ALIAERGLEDIARFEQGDAFDRDSLAALDPAPTL 212 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHH-HHHHHcCCccceEEEecCCCCHhHhhccCCCCCE
Confidence 34457999999999776655543 4677788886664333 566677764 37877775432 212345799
Q ss_pred EEecccccccccCh--HHHHHHHHHcccCCcEEEEEeCCCCccc---------cc--cCCCcchhhhHhhhhhHHHHHHh
Q 009069 286 AHCSRCLIPWGQYD--GLYLIEVDRVLRPGGYWILSGPPVNWES---------HW--KGWNRTTEDLKSEQNGIETIARS 352 (544)
Q Consensus 286 V~~~~~l~h~~~d~--~~~L~Ei~RVLKPGG~Lvis~pp~~w~~---------~~--~~w~~t~e~L~~~~~~ie~la~~ 352 (544)
++.+..++-++++. ...|.-+.+.|.|||++|..+.|..-.. +. ..|.- ....+.+|..+.+.
T Consensus 213 ~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsHr~g~~WvM----RrRsq~EmD~Lv~~ 288 (311)
T PF12147_consen 213 AIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSHRDGKAWVM----RRRSQAEMDQLVEA 288 (311)
T ss_pred EEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcccCCCceEE----EecCHHHHHHHHHH
Confidence 99999887777654 5678999999999999999975422110 10 12321 12245678889999
Q ss_pred hcceeeeeec
Q 009069 353 LCWKKLIQKK 362 (544)
Q Consensus 353 l~w~~v~~~~ 362 (544)
.+|+++.+.-
T Consensus 289 aGF~K~~q~I 298 (311)
T PF12147_consen 289 AGFEKIDQRI 298 (311)
T ss_pred cCCchhhhee
Confidence 9998776543
No 183
>PLN02823 spermine synthase
Probab=97.63 E-value=0.00023 Score=75.06 Aligned_cols=102 Identities=13% Similarity=0.120 Sum_probs=67.0
Q ss_pred CCCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHH----cCCCeEEEEecccc-CCCCCCCeeEEEe
Q 009069 218 SIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALE----RGVPALIGVMASIR-LPYPSRAFDMAHC 288 (544)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~e----rgv~~~~~v~d~~~-LPfpd~sFDlV~~ 288 (544)
..++||.||+|.|..+.++++. .++++|+++..+..+...+... ....+.+.+.|... +...+++||+|++
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~ 182 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG 182 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence 4568999999999999988774 4778888665444333222111 12356677776543 3334678999998
Q ss_pred cccccccccC------hHHHHH-HHHHcccCCcEEEEEe
Q 009069 289 SRCLIPWGQY------DGLYLI-EVDRVLRPGGYWILSG 320 (544)
Q Consensus 289 ~~~l~h~~~d------~~~~L~-Ei~RVLKPGG~Lvis~ 320 (544)
-. ..++... ...+++ .+.+.|+|||.|++..
T Consensus 183 D~-~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~ 220 (336)
T PLN02823 183 DL-ADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQA 220 (336)
T ss_pred cC-CCccccCcchhhccHHHHHHHHHHhcCCCcEEEEec
Confidence 53 2222111 146787 8999999999998864
No 184
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=97.61 E-value=0.00023 Score=67.44 Aligned_cols=115 Identities=15% Similarity=0.037 Sum_probs=78.2
Q ss_pred HHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhCCcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCC-----C
Q 009069 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLP-----Y 278 (544)
Q Consensus 204 ~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LP-----f 278 (544)
..+.+...+.. .++.-||++|.|||-++.+++++++.-.++.....+........+....+.+..+|+..+. +
T Consensus 36 lA~~M~s~I~p--esglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e~ 113 (194)
T COG3963 36 LARKMASVIDP--ESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGEH 113 (194)
T ss_pred HHHHHHhccCc--ccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHhhc
Confidence 33444444433 3344799999999999999999865333333333344444444455555567777765554 5
Q ss_pred CCCCeeEEEecccccccccCh-HHHHHHHHHcccCCcEEEEEe
Q 009069 279 PSRAFDMAHCSRCLIPWGQYD-GLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 279 pd~sFDlV~~~~~l~h~~~d~-~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
.+..||.|+|..-+..++-.. .++|+++...|++||.|+.-.
T Consensus 114 ~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqft 156 (194)
T COG3963 114 KGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFT 156 (194)
T ss_pred CCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEE
Confidence 678899999977665555433 688999999999999998864
No 185
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=97.60 E-value=0.00023 Score=74.48 Aligned_cols=99 Identities=15% Similarity=0.170 Sum_probs=66.8
Q ss_pred CCCEEEEeCCCCcHHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCC--eEEEEeccccCCCCCCCeeEEEecccc
Q 009069 218 SIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERGVP--ALIGVMASIRLPYPSRAFDMAHCSRCL 292 (544)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~---~V~~vdisp~dls~a~v~~A~ergv~--~~~~v~d~~~LPfpd~sFDlV~~~~~l 292 (544)
..++|||+|||+|.+...-++. .|.+++.+. +..-..+.+..++.. +.+..+..+.+.+|-.+.|+|++-..-
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~--ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMG 137 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAGARKVYAVEASS--IADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMG 137 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhCcceEEEEechH--HHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhh
Confidence 3558999999999888877776 567777654 445566677777764 455556666666667899999984432
Q ss_pred cccc-cCh-HHHHHHHHHcccCCcEEEE
Q 009069 293 IPWG-QYD-GLYLIEVDRVLRPGGYWIL 318 (544)
Q Consensus 293 ~h~~-~d~-~~~L~Ei~RVLKPGG~Lvi 318 (544)
..+. +.. ..+|..=.+-|+|||.++=
T Consensus 138 y~Ll~EsMldsVl~ARdkwL~~~G~i~P 165 (346)
T KOG1499|consen 138 YFLLYESMLDSVLYARDKWLKEGGLIYP 165 (346)
T ss_pred HHHHHhhhhhhhhhhhhhccCCCceEcc
Confidence 1111 111 4556666789999998754
No 186
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=97.59 E-value=0.0015 Score=63.43 Aligned_cols=100 Identities=11% Similarity=0.004 Sum_probs=62.3
Q ss_pred CCEEEEeCCCCcHHHHHHhhCC---cEEEeCCccchHHHHHHHHHHcCC--CeEEEEecccc-CC-C-C-CCCeeEEEec
Q 009069 219 IRTAIDTGCGVASWGAYLMSRN---ILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIR-LP-Y-P-SRAFDMAHCS 289 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~---V~~vdisp~dls~a~v~~A~ergv--~~~~~v~d~~~-LP-f-p-d~sFDlV~~~ 289 (544)
+.+|||++||+|.++..++.++ ++++|.++..+...+.+.. ..+. .+.+...|... +. + . ...||+|+.-
T Consensus 50 g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~-~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~D 128 (189)
T TIGR00095 50 GAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLA-LLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLD 128 (189)
T ss_pred CCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHH-HhCCcccEEEEehhHHHHHHHhhccCCCceEEEEC
Confidence 3489999999999999999874 6777887655543333322 3333 35677777633 22 1 1 2247888876
Q ss_pred ccccccccChHHHHHHHHH--cccCCcEEEEEeC
Q 009069 290 RCLIPWGQYDGLYLIEVDR--VLRPGGYWILSGP 321 (544)
Q Consensus 290 ~~l~h~~~d~~~~L~Ei~R--VLKPGG~Lvis~p 321 (544)
.-+.. .....++..+.. +|+++|.+++...
T Consensus 129 PPy~~--~~~~~~l~~l~~~~~l~~~~iiv~E~~ 160 (189)
T TIGR00095 129 PPFFN--GALQALLELCENNWILEDTVLIVVEED 160 (189)
T ss_pred cCCCC--CcHHHHHHHHHHCCCCCCCeEEEEEec
Confidence 63321 112444544433 6899998888754
No 187
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=97.58 E-value=0.00014 Score=73.77 Aligned_cols=152 Identities=15% Similarity=0.153 Sum_probs=82.0
Q ss_pred HHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHh-hC--CcEEEeCCccchHHHHHHHHH---------------HcC--
Q 009069 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLM-SR--NILAVSFAPRDTHEAQVQFAL---------------ERG-- 263 (544)
Q Consensus 204 ~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La-~~--~V~~vdisp~dls~a~v~~A~---------------erg-- 263 (544)
.++.+.+.+......+.++||||||.-..-..-+ +. .|+..|.++....+-+..+.. ..|
T Consensus 42 ~L~~l~~~f~~g~~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~ 121 (256)
T PF01234_consen 42 FLKNLHETFSSGGVKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKR 121 (256)
T ss_dssp HHHHHHHHHHTSSS-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSS
T ss_pred HHHHHHHHhCccCcCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCc
Confidence 4455556665444456799999999854322212 22 688888877544322211110 001
Q ss_pred -------------CCeEEEEeccccC-CCCC-----CCeeEEEecccccccccCh---HHHHHHHHHcccCCcEEEEEeC
Q 009069 264 -------------VPALIGVMASIRL-PYPS-----RAFDMAHCSRCLIPWGQYD---GLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 264 -------------v~~~~~v~d~~~L-Pfpd-----~sFDlV~~~~~l~h~~~d~---~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
+ -.+...|..+. |+.. ..||+|++.+|++-...+. ..+++.+.++|||||.|++.+-
T Consensus 122 ~~~~e~e~~lR~~V-k~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~ 200 (256)
T PF01234_consen 122 EKWEEKEEKLRRAV-KQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGV 200 (256)
T ss_dssp SGHHHHHHHHHHHE-EEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred chhhhHHHHHHHhh-ceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEE
Confidence 1 12344454443 3332 3599999999998877766 5789999999999999999853
Q ss_pred -CC-CccccccCCCcchhhhHhhhhhHHHHHHhhcceeeee
Q 009069 322 -PV-NWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQ 360 (544)
Q Consensus 322 -p~-~w~~~~~~w~~t~e~L~~~~~~ie~la~~l~w~~v~~ 360 (544)
.. .+.... .....+.-..+.+++..+..++.....
T Consensus 201 l~~t~Y~vG~----~~F~~l~l~ee~v~~al~~aG~~i~~~ 237 (256)
T PF01234_consen 201 LGSTYYMVGG----HKFPCLPLNEEFVREALEEAGFDIEDL 237 (256)
T ss_dssp SS-SEEEETT----EEEE---B-HHHHHHHHHHTTEEEEEE
T ss_pred cCceeEEECC----EecccccCCHHHHHHHHHHcCCEEEec
Confidence 11 111110 111122223345677777788865543
No 188
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.57 E-value=0.00063 Score=64.84 Aligned_cols=109 Identities=19% Similarity=0.263 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHhc-ccCCCCCEEEEeCCCCcHHHHHHhhCC-----cEEEeCCccchHHHHHHHHHHcCCCeEEEEec--
Q 009069 201 ADAYIDDIGKLIN-LKDGSIRTAIDTGCGVASWGAYLMSRN-----ILAVSFAPRDTHEAQVQFALERGVPALIGVMA-- 272 (544)
Q Consensus 201 a~~~i~~L~~lL~-l~~g~~r~VLDIGCGtG~~a~~La~~~-----V~~vdisp~dls~a~v~~A~ergv~~~~~v~d-- 272 (544)
+...+.++.+... +..+...+|||+||++|.|+..+++++ +.++|+.+.... ..+....+|
T Consensus 5 a~~KL~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~-----------~~~~~i~~d~~ 73 (181)
T PF01728_consen 5 AAFKLYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPL-----------QNVSFIQGDIT 73 (181)
T ss_dssp HHHHHHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS------------TTEEBTTGGGE
T ss_pred HHHHHHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEeccccccc-----------cceeeeecccc
Confidence 4445566666666 445456799999999999999999875 677777654111 111111111
Q ss_pred ----cccCC--C--CCCCeeEEEecccccccccC----h-------HHHHHHHHHcccCCcEEEEEeC
Q 009069 273 ----SIRLP--Y--PSRAFDMAHCSRCLIPWGQY----D-------GLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 273 ----~~~LP--f--pd~sFDlV~~~~~l~h~~~d----~-------~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
...+. + ..+.||+|+|-.+. ....+ . ...+.-+.+.|||||.|++...
T Consensus 74 ~~~~~~~i~~~~~~~~~~~dlv~~D~~~-~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~ 140 (181)
T PF01728_consen 74 NPENIKDIRKLLPESGEKFDLVLSDMAP-NVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVF 140 (181)
T ss_dssp EEEHSHHGGGSHGTTTCSESEEEE--------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEES
T ss_pred hhhHHHhhhhhccccccCcceecccccc-CCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEec
Confidence 11111 1 12689999996632 11111 1 2344556678999999999764
No 189
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=97.49 E-value=0.00022 Score=77.98 Aligned_cols=96 Identities=19% Similarity=0.249 Sum_probs=60.3
Q ss_pred CCEEEEeCCCCcHHHHHHhhC--------CcEEEeCCccchHHHHHHHHHHcC--CCeEEEEeccccCCCCCCCeeEEEe
Q 009069 219 IRTAIDTGCGVASWGAYLMSR--------NILAVSFAPRDTHEAQVQFALERG--VPALIGVMASIRLPYPSRAFDMAHC 288 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~--------~V~~vdisp~dls~a~v~~A~erg--v~~~~~v~d~~~LPfpd~sFDlV~~ 288 (544)
...|||||||+|.+....++. .|.+++-++......+ +....++ -.+.++.+|.+....+. ..|+|++
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~-~~v~~n~w~~~V~vi~~d~r~v~lpe-kvDIIVS 264 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQ-KRVNANGWGDKVTVIHGDMREVELPE-KVDIIVS 264 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHH-HHHHHTTTTTTEEEEES-TTTSCHSS--EEEEEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHH-HHHHhcCCCCeEEEEeCcccCCCCCC-ceeEEEE
Confidence 357999999999887655443 4677777664332222 2323443 35888888988887654 8999998
Q ss_pred cccccccccCh--HHHHHHHHHcccCCcEEE
Q 009069 289 SRCLIPWGQYD--GLYLIEVDRVLRPGGYWI 317 (544)
Q Consensus 289 ~~~l~h~~~d~--~~~L~Ei~RVLKPGG~Lv 317 (544)
-..- .+..+. ...|....|.|||||.++
T Consensus 265 ElLG-sfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 265 ELLG-SFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp ---B-TTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred eccC-CccccccCHHHHHHHHhhcCCCCEEe
Confidence 3322 233222 567899999999998775
No 190
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.46 E-value=0.0018 Score=62.38 Aligned_cols=102 Identities=20% Similarity=0.249 Sum_probs=71.1
Q ss_pred CCEEEEeCCCCcHHHHHHhhC-C----cEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEeccccc
Q 009069 219 IRTAIDTGCGVASWGAYLMSR-N----ILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLI 293 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~-~----V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~sFDlV~~~~~l~ 293 (544)
...+||||||+|.....|++. + ..++|+.|... ++..+-|+.+++.+..++.|...- ...++.|+++.+.-+.
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~-~~Tl~TA~~n~~~~~~V~tdl~~~-l~~~~VDvLvfNPPYV 121 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEAL-EATLETARCNRVHIDVVRTDLLSG-LRNESVDVLVFNPPYV 121 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHH-HHHHHHHHhcCCccceeehhHHhh-hccCCccEEEECCCcC
Confidence 447999999999998888876 2 56788888655 455566766777766666664322 2238899999877554
Q ss_pred ccccCh--------------------HHHHHHHHHcccCCcEEEEEeCC
Q 009069 294 PWGQYD--------------------GLYLIEVDRVLRPGGYWILSGPP 322 (544)
Q Consensus 294 h~~~d~--------------------~~~L~Ei~RVLKPGG~Lvis~pp 322 (544)
+-.+++ ..++..+..+|.|.|.|++..-.
T Consensus 122 pt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~ 170 (209)
T KOG3191|consen 122 PTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALR 170 (209)
T ss_pred cCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehh
Confidence 322211 25677788889999999998653
No 191
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.44 E-value=0.00071 Score=66.39 Aligned_cols=102 Identities=16% Similarity=0.165 Sum_probs=64.4
Q ss_pred HHHHHhc--ccCCCCCEEEEeCCCCcHHHHHHhh----CCcEEEeCCccchHHHHHHHHHHc---------------CCC
Q 009069 207 DIGKLIN--LKDGSIRTAIDTGCGVASWGAYLMS----RNILAVSFAPRDTHEAQVQFALER---------------GVP 265 (544)
Q Consensus 207 ~L~~lL~--l~~g~~r~VLDIGCGtG~~a~~La~----~~V~~vdisp~dls~a~v~~A~er---------------gv~ 265 (544)
.+.+.|. +.+|. ++||+|.|+|.++..++. .+...++| +..+..++.+.++ ...
T Consensus 71 ~~le~L~~~L~pG~--s~LdvGsGSGYLt~~~~~mvg~~g~~~~GI---Eh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~ 145 (237)
T KOG1661|consen 71 TALEYLDDHLQPGA--SFLDVGSGSGYLTACFARMVGATGGNVHGI---EHIPELVEYSKKNLDKDITTSESSSKLKRGE 145 (237)
T ss_pred HHHHHHHHhhccCc--ceeecCCCccHHHHHHHHHhcCCCccccch---hhhHHHHHHHHHHHHhhccCchhhhhhccCc
Confidence 3444554 45544 899999999987766653 34422333 3333333333221 123
Q ss_pred eEEEEeccccCCCCCCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEe
Q 009069 266 ALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 266 ~~~~v~d~~~LPfpd~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
..++++|....--+...||.||+.... ....+++...|+|||.+++-.
T Consensus 146 l~ivvGDgr~g~~e~a~YDaIhvGAaa-------~~~pq~l~dqL~~gGrllip~ 193 (237)
T KOG1661|consen 146 LSIVVGDGRKGYAEQAPYDAIHVGAAA-------SELPQELLDQLKPGGRLLIPV 193 (237)
T ss_pred eEEEeCCccccCCccCCcceEEEccCc-------cccHHHHHHhhccCCeEEEee
Confidence 556677776666667889999997533 345577788899999998853
No 192
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=97.42 E-value=0.00057 Score=67.07 Aligned_cols=128 Identities=16% Similarity=0.134 Sum_probs=77.4
Q ss_pred ceeeecCCceecCCCCCCCcccHHHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhh--C--CcEEEeCCccchHHH
Q 009069 179 NWVRFQGDRFSFPGGGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMS--R--NILAVSFAPRDTHEA 254 (544)
Q Consensus 179 ~w~~~~ge~~~F~g~g~~F~~ga~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~--~--~V~~vdisp~dls~a 254 (544)
...+..|-.|.+.-...+|..+...--.++.+.+ .++ .+|||+-||.|.|+..+++ + .|.++|+.|.... .
T Consensus 66 t~~~E~G~~f~~D~~kvyfs~rl~~Er~Ri~~~v--~~~--e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~-~ 140 (200)
T PF02475_consen 66 TIHKENGIRFKVDLSKVYFSPRLSTERRRIANLV--KPG--EVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVE-Y 140 (200)
T ss_dssp EEEEETTEEEEEETTTS---GGGHHHHHHHHTC----TT---EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHH-H
T ss_pred EEEEeCCEEEEEccceEEEccccHHHHHHHHhcC--Ccc--eEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHH-H
Confidence 3345555556655556666666554444555542 344 4999999999999999987 3 4888999886553 4
Q ss_pred HHHHHHHcCCC--eEEEEeccccCCCCCCCeeEEEecccccccccChHHHHHHHHHcccCCcEEE
Q 009069 255 QVQFALERGVP--ALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWI 317 (544)
Q Consensus 255 ~v~~A~ergv~--~~~~v~d~~~LPfpd~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lv 317 (544)
..+.+..+++. +....+|...+.. .+.||-|++.. +.....+|..+.+++|+||.+-
T Consensus 141 L~~Ni~lNkv~~~i~~~~~D~~~~~~-~~~~drvim~l-----p~~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 141 LKENIRLNKVENRIEVINGDAREFLP-EGKFDRVIMNL-----PESSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp HHHHHHHTT-TTTEEEEES-GGG----TT-EEEEEE-------TSSGGGGHHHHHHHEEEEEEEE
T ss_pred HHHHHHHcCCCCeEEEEcCCHHHhcC-ccccCEEEECC-----hHHHHHHHHHHHHHhcCCcEEE
Confidence 44445555553 5667788777654 78999998744 3334579999999999999863
No 193
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=97.41 E-value=0.00077 Score=72.39 Aligned_cols=95 Identities=13% Similarity=0.147 Sum_probs=67.1
Q ss_pred CEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCC-eEEEEeccccCCCCCCCeeEEEecccccc
Q 009069 220 RTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGVP-ALIGVMASIRLPYPSRAFDMAHCSRCLIP 294 (544)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv~-~~~~v~d~~~LPfpd~sFDlV~~~~~l~h 294 (544)
.+|||++||+|.++..++.. .|+++|+++..+..+..+. ..+++. ..+...|+..+....+.||+|+...
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~-~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP---- 133 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNL-ELNGLENEKVFNKDANALLHEERKFDVVDIDP---- 133 (382)
T ss_pred CEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHH-HHhCCCceEEEhhhHHHHHhhcCCCCEEEECC----
Confidence 37999999999999998753 4788898876665444333 334443 4466677655322145799999854
Q ss_pred cccChHHHHHHHHHcccCCcEEEEEe
Q 009069 295 WGQYDGLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 295 ~~~d~~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
+ ..+..++..+.+.+++||.+.++.
T Consensus 134 ~-Gs~~~~l~~al~~~~~~gilyvSA 158 (382)
T PRK04338 134 F-GSPAPFLDSAIRSVKRGGLLCVTA 158 (382)
T ss_pred C-CCcHHHHHHHHHHhcCCCEEEEEe
Confidence 2 234678888888899999999984
No 194
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=97.40 E-value=0.00021 Score=69.84 Aligned_cols=116 Identities=20% Similarity=0.242 Sum_probs=76.1
Q ss_pred cCCCCCCCcccHHHHHHHHHHHhcccC----CCCCEEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcC
Q 009069 190 FPGGGTMFPRGADAYIDDIGKLINLKD----GSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERG 263 (544)
Q Consensus 190 F~g~g~~F~~ga~~~i~~L~~lL~l~~----g~~r~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~A~erg 263 (544)
|.|.|.||--..+.+ .+++.+.. ....++||+|+|.|-.+..++.. .|.+++++ ..++......+
T Consensus 84 ~lgrGsMFifSe~QF----~klL~i~~p~w~~~~~~lLDlGAGdGeit~~m~p~feevyATElS-----~tMr~rL~kk~ 154 (288)
T KOG3987|consen 84 FLGRGSMFIFSEEQF----RKLLVIGGPAWGQEPVTLLDLGAGDGEITLRMAPTFEEVYATELS-----WTMRDRLKKKN 154 (288)
T ss_pred ccccCceEEecHHHH----HHHHhcCCCccCCCCeeEEeccCCCcchhhhhcchHHHHHHHHhh-----HHHHHHHhhcC
Confidence 677788876555544 33443331 23468999999999999988875 45555554 44444444444
Q ss_pred CCeEEEEeccccCCCCCCCeeEEEecccccccccChHHHHHHHHHcccC-CcEEEEE
Q 009069 264 VPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRP-GGYWILS 319 (544)
Q Consensus 264 v~~~~~v~d~~~LPfpd~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKP-GG~Lvis 319 (544)
.++. ......--+-+||+|.|...+ .-..++..+|+++.-+|+| +|..|++
T Consensus 155 ynVl----~~~ew~~t~~k~dli~clNlL-DRc~~p~kLL~Di~~vl~psngrviva 206 (288)
T KOG3987|consen 155 YNVL----TEIEWLQTDVKLDLILCLNLL-DRCFDPFKLLEDIHLVLAPSNGRVIVA 206 (288)
T ss_pred Ccee----eehhhhhcCceeehHHHHHHH-HhhcChHHHHHHHHHHhccCCCcEEEE
Confidence 3322 121222234469999998877 4444589999999999999 8988876
No 195
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.39 E-value=0.0047 Score=59.91 Aligned_cols=92 Identities=17% Similarity=0.157 Sum_probs=60.9
Q ss_pred EEEEeCCCCcHHHHHHh----hCCcEEEeCCccchHHHHHHHHHHcCCC-eEEEEeccccCCCCCCCeeEEEeccccccc
Q 009069 221 TAIDTGCGVASWGAYLM----SRNILAVSFAPRDTHEAQVQFALERGVP-ALIGVMASIRLPYPSRAFDMAHCSRCLIPW 295 (544)
Q Consensus 221 ~VLDIGCGtG~~a~~La----~~~V~~vdisp~dls~a~v~~A~ergv~-~~~~v~d~~~LPfpd~sFDlV~~~~~l~h~ 295 (544)
+++|||+|.|--+.-|+ +..++.+|-..+-.. .....+.+-+.. +.+....++. +....+||+|++..+.
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~-FL~~~~~~L~L~nv~v~~~R~E~-~~~~~~fd~v~aRAv~--- 125 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVA-FLKEVVRELGLSNVEVINGRAEE-PEYRESFDVVTARAVA--- 125 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHH-HHHHHHHHHT-SSEEEEES-HHH-TTTTT-EEEEEEESSS---
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHH-HHHHHHHHhCCCCEEEEEeeecc-cccCCCccEEEeehhc---
Confidence 79999999995444443 336777776543221 122233344554 7777777777 5567889999996543
Q ss_pred ccChHHHHHHHHHcccCCcEEEEE
Q 009069 296 GQYDGLYLIEVDRVLRPGGYWILS 319 (544)
Q Consensus 296 ~~d~~~~L~Ei~RVLKPGG~Lvis 319 (544)
....++.-+...|++||.+++-
T Consensus 126 --~l~~l~~~~~~~l~~~G~~l~~ 147 (184)
T PF02527_consen 126 --PLDKLLELARPLLKPGGRLLAY 147 (184)
T ss_dssp --SHHHHHHHHGGGEEEEEEEEEE
T ss_pred --CHHHHHHHHHHhcCCCCEEEEE
Confidence 3468888899999999998886
No 196
>PRK04148 hypothetical protein; Provisional
Probab=97.38 E-value=0.0011 Score=61.06 Aligned_cols=90 Identities=13% Similarity=0.081 Sum_probs=56.3
Q ss_pred CCEEEEeCCCCcH-HHHHHhhCCcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCC-CCCeeEEEecccccccc
Q 009069 219 IRTAIDTGCGVAS-WGAYLMSRNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYP-SRAFDMAHCSRCLIPWG 296 (544)
Q Consensus 219 ~r~VLDIGCGtG~-~a~~La~~~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfp-d~sFDlV~~~~~l~h~~ 296 (544)
+.+|||||||+|. ++..|++.|..++.+ |+++..++.+.+.++ .+.+.|.....+. -..+|+|++.+.-
T Consensus 17 ~~kileIG~GfG~~vA~~L~~~G~~ViaI---Di~~~aV~~a~~~~~--~~v~dDlf~p~~~~y~~a~liysirpp---- 87 (134)
T PRK04148 17 NKKIVELGIGFYFKVAKKLKESGFDVIVI---DINEKAVEKAKKLGL--NAFVDDLFNPNLEIYKNAKLIYSIRPP---- 87 (134)
T ss_pred CCEEEEEEecCCHHHHHHHHHCCCEEEEE---ECCHHHHHHHHHhCC--eEEECcCCCCCHHHHhcCCEEEEeCCC----
Confidence 4589999999995 898999886444444 444456677777664 4445565444332 4569999987722
Q ss_pred cChHHHHHHHHHcccCCcEEEEE
Q 009069 297 QYDGLYLIEVDRVLRPGGYWILS 319 (544)
Q Consensus 297 ~d~~~~L~Ei~RVLKPGG~Lvis 319 (544)
.+....+.++.+-+ |.-++|.
T Consensus 88 ~el~~~~~~la~~~--~~~~~i~ 108 (134)
T PRK04148 88 RDLQPFILELAKKI--NVPLIIK 108 (134)
T ss_pred HHHHHHHHHHHHHc--CCCEEEE
Confidence 22344555555543 4556665
No 197
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=97.35 E-value=0.00052 Score=71.05 Aligned_cols=118 Identities=21% Similarity=0.274 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhh-----------CCcEEEeCCccchHHHHHHHHHHcCCC---e
Q 009069 201 ADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMS-----------RNILAVSFAPRDTHEAQVQFALERGVP---A 266 (544)
Q Consensus 201 a~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~-----------~~V~~vdisp~dls~a~v~~A~ergv~---~ 266 (544)
.....+.+.+++....+ .+|||.+||+|.|...+.+ ..+.++|+++....-+...+.. ++.. .
T Consensus 31 P~~i~~l~~~~~~~~~~--~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l-~~~~~~~~ 107 (311)
T PF02384_consen 31 PREIVDLMVKLLNPKKG--DSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLL-HGIDNSNI 107 (311)
T ss_dssp -HHHHHHHHHHHTT-TT--EEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHH-TTHHCBGC
T ss_pred HHHHHHHHHhhhhcccc--ceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhh-hccccccc
Confidence 45566677777754443 3899999999999877765 2567788866555444444433 2321 2
Q ss_pred EEEEeccccCCCC--CCCeeEEEeccccccc--cc---------------Ch---HHHHHHHHHcccCCcEEEEEeC
Q 009069 267 LIGVMASIRLPYP--SRAFDMAHCSRCLIPW--GQ---------------YD---GLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 267 ~~~v~d~~~LPfp--d~sFDlV~~~~~l~h~--~~---------------d~---~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
.+...|....+.. ...||+|+++.-+... .. .. ..++..+.+.|++||++++..|
T Consensus 108 ~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp 184 (311)
T PF02384_consen 108 NIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILP 184 (311)
T ss_dssp EEEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cccccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEec
Confidence 3556665444433 4789999997644322 00 00 2588889999999999988876
No 198
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=97.27 E-value=0.00078 Score=68.22 Aligned_cols=95 Identities=13% Similarity=0.034 Sum_probs=63.2
Q ss_pred CEEEEeCCCCcHHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEecccc-CCC------CCCCeeE
Q 009069 220 RTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIR-LPY------PSRAFDM 285 (544)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~-----~V~~vdisp~dls~a~v~~A~ergv--~~~~~v~d~~~-LPf------pd~sFDl 285 (544)
++||+||+++|..+..|+.. .+++++..+.....+...+ .+.|+ .+.+..+++.. |+- ..++||+
T Consensus 81 k~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~-~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~ 159 (247)
T PLN02589 81 KNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVI-QKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFDF 159 (247)
T ss_pred CEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHH-HHCCCCCceEEEeccHHHHHHHHHhccccCCcccE
Confidence 38999999999888888753 4778888664443333222 23343 46677666433 221 1368999
Q ss_pred EEecccccccccChHHHHHHHHHcccCCcEEEEE
Q 009069 286 AHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILS 319 (544)
Q Consensus 286 V~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis 319 (544)
|+.-. ....-..++..+.+.|+|||.+++.
T Consensus 160 iFiDa----dK~~Y~~y~~~~l~ll~~GGviv~D 189 (247)
T PLN02589 160 IFVDA----DKDNYINYHKRLIDLVKVGGVIGYD 189 (247)
T ss_pred EEecC----CHHHhHHHHHHHHHhcCCCeEEEEc
Confidence 98643 2222367888889999999998886
No 199
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=97.25 E-value=0.0015 Score=69.68 Aligned_cols=95 Identities=18% Similarity=0.155 Sum_probs=62.5
Q ss_pred EEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEeccccC-C-CC--------------CC
Q 009069 221 TAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRL-P-YP--------------SR 281 (544)
Q Consensus 221 ~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~A~ergv-~~~~~v~d~~~L-P-fp--------------d~ 281 (544)
+|||++||+|.++..|++. .++++|+++.++..+.. .+..+++ ++.+..+|+... + +. ..
T Consensus 209 ~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai~~a~~-N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~ 287 (362)
T PRK05031 209 DLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQY-NIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDLKSY 287 (362)
T ss_pred eEEEEeccccHHHHHHHhhCCEEEEEECCHHHHHHHHH-HHHHhCCCcEEEEECCHHHHHHHHhhcccccccccccccCC
Confidence 6999999999999988875 68889998877755443 3434455 577777776442 1 10 22
Q ss_pred CeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeCC
Q 009069 282 AFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPP 322 (544)
Q Consensus 282 sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~pp 322 (544)
.||+|+.-.-. ..-...++..+. +|++.++++-.|
T Consensus 288 ~~D~v~lDPPR---~G~~~~~l~~l~---~~~~ivyvSC~p 322 (362)
T PRK05031 288 NFSTIFVDPPR---AGLDDETLKLVQ---AYERILYISCNP 322 (362)
T ss_pred CCCEEEECCCC---CCCcHHHHHHHH---ccCCEEEEEeCH
Confidence 58999975532 111134555554 478888888654
No 200
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=97.24 E-value=0.0017 Score=69.12 Aligned_cols=112 Identities=13% Similarity=0.075 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEeccccCC
Q 009069 201 ADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRLP 277 (544)
Q Consensus 201 a~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~A~ergv-~~~~~v~d~~~LP 277 (544)
.+..++.+.+.+.... .+|||++||+|.++..|++. .++++|+++.++..+..+ +..+++ ++.+..+|....-
T Consensus 183 ~~~l~~~v~~~~~~~~---~~vlDl~~G~G~~sl~la~~~~~v~~vE~~~~av~~a~~n-~~~~~~~~v~~~~~d~~~~~ 258 (353)
T TIGR02143 183 NIKMLEWACEVTQGSK---GDLLELYCGNGNFSLALAQNFRRVLATEIAKPSVNAAQYN-IAANNIDNVQIIRMSAEEFT 258 (353)
T ss_pred HHHHHHHHHHHhhcCC---CcEEEEeccccHHHHHHHHhCCEEEEEECCHHHHHHHHHH-HHHcCCCcEEEEEcCHHHHH
Confidence 3444455555543222 25999999999999998875 688899988777555543 334455 5677777764421
Q ss_pred --------C---C-----CCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeCC
Q 009069 278 --------Y---P-----SRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPP 322 (544)
Q Consensus 278 --------f---p-----d~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~pp 322 (544)
+ . ...||+|+.-.-...+ ...++..+. +|++.++++-.|
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~d~v~lDPPR~G~---~~~~l~~l~---~~~~ivYvsC~p 313 (353)
T TIGR02143 259 QAMNGVREFRRLKGIDLKSYNCSTIFVDPPRAGL---DPDTCKLVQ---AYERILYISCNP 313 (353)
T ss_pred HHHhhccccccccccccccCCCCEEEECCCCCCC---cHHHHHHHH---cCCcEEEEEcCH
Confidence 1 0 1237999875522111 134555444 489999999654
No 201
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=97.22 E-value=0.0025 Score=70.18 Aligned_cols=103 Identities=16% Similarity=0.172 Sum_probs=66.5
Q ss_pred CCCEEEEeCCCCcHHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCC-eEEEEeccccCC-CCCCCeeEEE---
Q 009069 218 SIRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGVP-ALIGVMASIRLP-YPSRAFDMAH--- 287 (544)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~-----~V~~vdisp~dls~a~v~~A~ergv~-~~~~v~d~~~LP-fpd~sFDlV~--- 287 (544)
.+.+|||+++|.|.=+.++++. .+++.|+++.-+...+ +.+.+-|+. +.+...|...+. ...+.||.|+
T Consensus 113 pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~-~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvDa 191 (470)
T PRK11933 113 APQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLH-ANISRCGVSNVALTHFDGRVFGAALPETFDAILLDA 191 (470)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHH-HHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEcC
Confidence 3448999999999877777664 3677888665443222 333344654 455556665543 3346799999
Q ss_pred -ecccc--c-------ccccC--------hHHHHHHHHHcccCCcEEEEEeC
Q 009069 288 -CSRCL--I-------PWGQY--------DGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 288 -~~~~l--~-------h~~~d--------~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
|+..- . .|..+ +..+|..+.+.|||||+++.++-
T Consensus 192 PCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTC 243 (470)
T PRK11933 192 PCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTC 243 (470)
T ss_pred CCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECC
Confidence 55321 1 12111 14788999999999999999864
No 202
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.21 E-value=0.0031 Score=61.97 Aligned_cols=112 Identities=16% Similarity=0.139 Sum_probs=72.8
Q ss_pred CcccHHHHHHHHHHHhcc-cCCCCCEEEEeCCCCcHHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCCeEEEE
Q 009069 197 FPRGADAYIDDIGKLINL-KDGSIRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGVPALIGV 270 (544)
Q Consensus 197 F~~ga~~~i~~L~~lL~l-~~g~~r~VLDIGCGtG~~a~~La~~-----~V~~vdisp~dls~a~v~~A~ergv~~~~~v 270 (544)
+...+...+.+|.+...+ .. +.+|+|+|+-.|+|+..++++ .|.++|+.|.+.. ..+.+.+
T Consensus 25 yRSRAa~KL~el~~k~~i~~~--~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~-----------~~V~~iq 91 (205)
T COG0293 25 YRSRAAYKLLELNEKFKLFKP--GMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPI-----------PGVIFLQ 91 (205)
T ss_pred ccchHHHHHHHHHHhcCeecC--CCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccC-----------CCceEEe
Confidence 344455555566665543 33 348999999999999998876 2899999776542 2356666
Q ss_pred eccccCC--------CCCCCeeEEEecccc--------cccccCh--HHHHHHHHHcccCCcEEEEEeC
Q 009069 271 MASIRLP--------YPSRAFDMAHCSRCL--------IPWGQYD--GLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 271 ~d~~~LP--------fpd~sFDlV~~~~~l--------~h~~~d~--~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
+|...-+ +....+|+|+|-.+- .|...-. ..++.-+.++|+|||.|++...
T Consensus 92 ~d~~~~~~~~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~f 160 (205)
T COG0293 92 GDITDEDTLEKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVF 160 (205)
T ss_pred eeccCccHHHHHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEE
Confidence 6654433 234457999973332 1211111 3566667789999999999864
No 203
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=97.19 E-value=0.0022 Score=69.91 Aligned_cols=100 Identities=24% Similarity=0.258 Sum_probs=78.9
Q ss_pred EEEEeCCCCcHHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEeccccccccc
Q 009069 221 TAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQ 297 (544)
Q Consensus 221 ~VLDIGCGtG~~a~~La~~---~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~sFDlV~~~~~l~h~~~ 297 (544)
++|-+|||.-.+...+.+- .|+.+|+|+..+...++..+.+ ..-..+...|...+.|++++||+|+.-..++++..
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~-~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~~ 129 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKE-RPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALFE 129 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccC-CcceEEEEecchhccCCCcceeEEEecCccccccC
Confidence 7999999999998888775 5777888777665555444422 23467788899999999999999999999988776
Q ss_pred ChH---------HHHHHHHHcccCCcEEEEEeC
Q 009069 298 YDG---------LYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 298 d~~---------~~L~Ei~RVLKPGG~Lvis~p 321 (544)
+.. ..+.++.|+|+|||.++...-
T Consensus 130 de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 130 DEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred CchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 542 457899999999999887643
No 204
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=97.12 E-value=0.0025 Score=65.75 Aligned_cols=100 Identities=15% Similarity=0.155 Sum_probs=67.3
Q ss_pred cCCCCCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcC---------CCeEEEEecccc-CCCCC
Q 009069 215 KDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERG---------VPALIGVMASIR-LPYPS 280 (544)
Q Consensus 215 ~~g~~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~erg---------v~~~~~v~d~~~-LPfpd 280 (544)
..+..++||-||-|.|..++.+++. .++.++|++. .++.+++.. ..+.+...|... +.-..
T Consensus 73 ah~~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~-----Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~ 147 (282)
T COG0421 73 AHPNPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPA-----VIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCE 147 (282)
T ss_pred hCCCCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHH-----HHHHHHHhccCcccccCCCceEEEeccHHHHHHhCC
Confidence 3444569999999999999999986 5778888553 344444321 234556555433 22233
Q ss_pred CCeeEEEecccccccccC----hHHHHHHHHHcccCCcEEEEEe
Q 009069 281 RAFDMAHCSRCLIPWGQY----DGLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 281 ~sFDlV~~~~~l~h~~~d----~~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
.+||+|++-. ..+.... ...+++.+.|.|+++|.++...
T Consensus 148 ~~fDvIi~D~-tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~ 190 (282)
T COG0421 148 EKFDVIIVDS-TDPVGPAEALFTEEFYEGCRRALKEDGIFVAQA 190 (282)
T ss_pred CcCCEEEEcC-CCCCCcccccCCHHHHHHHHHhcCCCcEEEEec
Confidence 4899999733 2231110 1689999999999999999983
No 205
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.11 E-value=0.0049 Score=63.27 Aligned_cols=99 Identities=17% Similarity=0.106 Sum_probs=57.3
Q ss_pred CCCEEEEeCCCCcHHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCCeEEE--Eec--cccCCCCCCCeeEEEe
Q 009069 218 SIRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGVPALIG--VMA--SIRLPYPSRAFDMAHC 288 (544)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~-----~V~~vdisp~dls~a~v~~A~ergv~~~~~--v~d--~~~LPfpd~sFDlV~~ 288 (544)
..++|||+|+|.|.....+.+. .++++|.++.++..+. .+. +........ ... ....++. ..|+|++
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~-~l~-~~~~~~~~~~~~~~~~~~~~~~~--~~DLvi~ 108 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAK-RLL-RAGPNNRNAEWRRVLYRDFLPFP--PDDLVIA 108 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHH-HHH-hcccccccchhhhhhhcccccCC--CCcEEEE
Confidence 3458999999999765555442 5667777665543222 122 222111100 001 1122332 2399999
Q ss_pred cccccccccCh-HHHHHHHHHcccCCcEEEEEeCC
Q 009069 289 SRCLIPWGQYD-GLYLIEVDRVLRPGGYWILSGPP 322 (544)
Q Consensus 289 ~~~l~h~~~d~-~~~L~Ei~RVLKPGG~Lvis~pp 322 (544)
+++|..+.+.. ..+++.+.+.+.+ +|||+.|.
T Consensus 109 s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpG 141 (274)
T PF09243_consen 109 SYVLNELPSAARAELVRSLWNKTAP--VLVLVEPG 141 (274)
T ss_pred ehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCC
Confidence 99998888733 5566666666655 89888773
No 206
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=97.01 E-value=0.0028 Score=64.11 Aligned_cols=103 Identities=17% Similarity=0.161 Sum_probs=67.1
Q ss_pred CCCCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHc----CCCeEEEEeccccC-CCCCC-CeeEE
Q 009069 217 GSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALER----GVPALIGVMASIRL-PYPSR-AFDMA 286 (544)
Q Consensus 217 g~~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~er----gv~~~~~v~d~~~L-Pfpd~-sFDlV 286 (544)
...++||=||-|.|..+..+.+. .++++++++.-+..+..-+.... ..++.+...|.... .-..+ +||+|
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 34668999999999999999875 47888887754443332222211 24677777775332 12233 89999
Q ss_pred EecccccccccC----hHHHHHHHHHcccCCcEEEEEe
Q 009069 287 HCSRCLIPWGQY----DGLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 287 ~~~~~l~h~~~d----~~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
+.-..- +.... ...+++.+.+.|+|||.+++..
T Consensus 155 i~D~~d-p~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 155 IVDLTD-PDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp EEESSS-TTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEeCCC-CCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 973322 22111 1689999999999999999975
No 207
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=96.98 E-value=0.0055 Score=68.42 Aligned_cols=75 Identities=16% Similarity=0.055 Sum_probs=39.4
Q ss_pred CCEEEEeCCCCcHHHHHHhhC------------CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccC-----CCCCC
Q 009069 219 IRTAIDTGCGVASWGAYLMSR------------NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRL-----PYPSR 281 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~------------~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~L-----Pfpd~ 281 (544)
..+|||.|||+|.|...++++ .+.++|+++..+..+...+.........+...+.... .-..+
T Consensus 32 ~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~~ 111 (524)
T TIGR02987 32 KTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYLD 111 (524)
T ss_pred ceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeecccccccccccccccC
Confidence 458999999999998877643 2345555443333222222211112223332321111 11125
Q ss_pred CeeEEEeccccc
Q 009069 282 AFDMAHCSRCLI 293 (544)
Q Consensus 282 sFDlV~~~~~l~ 293 (544)
.||+|+++.-+.
T Consensus 112 ~fD~IIgNPPy~ 123 (524)
T TIGR02987 112 LFDIVITNPPYG 123 (524)
T ss_pred cccEEEeCCCcc
Confidence 799999977443
No 208
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=96.95 E-value=0.0031 Score=60.98 Aligned_cols=119 Identities=13% Similarity=0.143 Sum_probs=71.0
Q ss_pred ccHHHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhCC---cEEEeCCccchHHHHHHHHHHcCC--CeEEEEecc
Q 009069 199 RGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN---ILAVSFAPRDTHEAQVQFALERGV--PALIGVMAS 273 (544)
Q Consensus 199 ~ga~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~---V~~vdisp~dls~a~v~~A~ergv--~~~~~v~d~ 273 (544)
...+..-+.+-.++....-.+.++||+-||+|.++...+.+| ++.+|.++........+.. .-+. .+.+...|.
T Consensus 23 PT~drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~-~l~~~~~~~v~~~d~ 101 (183)
T PF03602_consen 23 PTTDRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLE-KLGLEDKIRVIKGDA 101 (183)
T ss_dssp SSSHHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHH-HHT-GGGEEEEESSH
T ss_pred CCcHHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHH-HhCCCcceeeeccCH
Confidence 344555556666665331234489999999999999999885 6777776644432222222 2232 255666663
Q ss_pred c-cC---CCCCCCeeEEEecccccccccCh--HHHHHHHH--HcccCCcEEEEEeC
Q 009069 274 I-RL---PYPSRAFDMAHCSRCLIPWGQYD--GLYLIEVD--RVLRPGGYWILSGP 321 (544)
Q Consensus 274 ~-~L---Pfpd~sFDlV~~~~~l~h~~~d~--~~~L~Ei~--RVLKPGG~Lvis~p 321 (544)
. .+ ......||+|+.-. ++.... ..++..+. .+|+++|.+++...
T Consensus 102 ~~~l~~~~~~~~~fDiIflDP---PY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~ 154 (183)
T PF03602_consen 102 FKFLLKLAKKGEKFDIIFLDP---PYAKGLYYEELLELLAENNLLNEDGLIIIEHS 154 (183)
T ss_dssp HHHHHHHHHCTS-EEEEEE-----STTSCHHHHHHHHHHHHTTSEEEEEEEEEEEE
T ss_pred HHHHHhhcccCCCceEEEECC---CcccchHHHHHHHHHHHCCCCCCCEEEEEEec
Confidence 2 22 12468899999877 444432 45666666 78999999999864
No 209
>PRK00536 speE spermidine synthase; Provisional
Probab=96.95 E-value=0.0078 Score=61.52 Aligned_cols=92 Identities=11% Similarity=0.058 Sum_probs=63.8
Q ss_pred cCCCCCEEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHHHHH---------cCCCeEEEEeccccCCCCCCCe
Q 009069 215 KDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALE---------RGVPALIGVMASIRLPYPSRAF 283 (544)
Q Consensus 215 ~~g~~r~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~A~e---------rgv~~~~~v~d~~~LPfpd~sF 283 (544)
.-+..++||=||.|.|..++.+++. .|+.+||++..+ +++++ ....+.+.. .. ..-..++|
T Consensus 69 ~h~~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~~Vv-----~~~k~~lP~~~~~~~DpRv~l~~-~~--~~~~~~~f 140 (262)
T PRK00536 69 TKKELKEVLIVDGFDLELAHQLFKYDTHVDFVQADEKIL-----DSFISFFPHFHEVKNNKNFTHAK-QL--LDLDIKKY 140 (262)
T ss_pred hCCCCCeEEEEcCCchHHHHHHHCcCCeeEEEECCHHHH-----HHHHHHCHHHHHhhcCCCEEEee-hh--hhccCCcC
Confidence 3445679999999999999999987 588888866444 33332 123344432 11 11124689
Q ss_pred eEEEecccccccccChHHHHHHHHHcccCCcEEEEEe
Q 009069 284 DMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 284 DlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
|+|+.-.. .+..+++.+.|.|+|||.++...
T Consensus 141 DVIIvDs~------~~~~fy~~~~~~L~~~Gi~v~Qs 171 (262)
T PRK00536 141 DLIICLQE------PDIHKIDGLKRMLKEDGVFISVA 171 (262)
T ss_pred CEEEEcCC------CChHHHHHHHHhcCCCcEEEECC
Confidence 99997532 23678899999999999999964
No 210
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.93 E-value=0.00028 Score=66.13 Aligned_cols=85 Identities=18% Similarity=0.188 Sum_probs=61.1
Q ss_pred EEEeCCCCcHHHHHHhhCCcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEecccccccccCh-H
Q 009069 222 AIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYD-G 300 (544)
Q Consensus 222 VLDIGCGtG~~a~~La~~~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~sFDlV~~~~~l~h~~~d~-~ 300 (544)
.+-||||.=.+ .-+...+|+.. ...+.++.-.....+|.+++.|+|+|.++++|+..+. .
T Consensus 6 kv~ig~G~~r~-----npgWi~~d~ed--------------~~~vdlvc~As~e~~F~dns~d~iyaeHvlEHlt~~Eg~ 66 (185)
T COG4627 6 KVKIGAGGKRV-----NPGWIITDVED--------------RPEVDLVCRASNESMFEDNSVDAIYAEHVLEHLTYDEGT 66 (185)
T ss_pred EEEEecccccc-----CCCceeeehhc--------------ccccchhhhhhhhccCCCcchHHHHHHHHHHHHhHHHHH
Confidence 56788886433 12455556522 1122233223556789999999999999999998755 6
Q ss_pred HHHHHHHHcccCCcEEEEEeCCCCc
Q 009069 301 LYLIEVDRVLRPGGYWILSGPPVNW 325 (544)
Q Consensus 301 ~~L~Ei~RVLKPGG~Lvis~pp~~w 325 (544)
.++++++|+|||||+|-++.|..+.
T Consensus 67 ~alkechr~Lrp~G~LriAvPdl~f 91 (185)
T COG4627 67 SALKECHRFLRPGGKLRIAVPDLKF 91 (185)
T ss_pred HHHHHHHHHhCcCcEEEEEcCCcch
Confidence 8999999999999999999885543
No 211
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.84 E-value=0.007 Score=66.08 Aligned_cols=113 Identities=19% Similarity=0.241 Sum_probs=76.7
Q ss_pred HHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEeccccCCCC-
Q 009069 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRLPYP- 279 (544)
Q Consensus 204 ~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~A~ergv-~~~~~v~d~~~LPfp- 279 (544)
+++...+.++...++ ++||+=||.|.|+..|+++ .|+++++++.++..++. .|..+++ ++.|..+++++..-.
T Consensus 281 l~~~a~~~~~~~~~~--~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~~-NA~~n~i~N~~f~~~~ae~~~~~~ 357 (432)
T COG2265 281 LYETALEWLELAGGE--RVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQE-NAAANGIDNVEFIAGDAEEFTPAW 357 (432)
T ss_pred HHHHHHHHHhhcCCC--EEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHHH-HHHHcCCCcEEEEeCCHHHHhhhc
Confidence 334444555444444 8999999999999999976 79999999988865554 4555555 588888887766533
Q ss_pred --CCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeCCC
Q 009069 280 --SRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPPV 323 (544)
Q Consensus 280 --d~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~pp~ 323 (544)
...||.|+.-.-. .--...+++.+.+ ++|-..+++|-+|.
T Consensus 358 ~~~~~~d~VvvDPPR---~G~~~~~lk~l~~-~~p~~IvYVSCNP~ 399 (432)
T COG2265 358 WEGYKPDVVVVDPPR---AGADREVLKQLAK-LKPKRIVYVSCNPA 399 (432)
T ss_pred cccCCCCEEEECCCC---CCCCHHHHHHHHh-cCCCcEEEEeCCHH
Confidence 3578999874422 1111355555554 57888999996654
No 212
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=96.78 E-value=0.045 Score=57.91 Aligned_cols=92 Identities=15% Similarity=0.144 Sum_probs=59.8
Q ss_pred CCCEEEEeCCCCcHHHHHHhhCCcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEeccccccccc
Q 009069 218 SIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQ 297 (544)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~sFDlV~~~~~l~h~~~ 297 (544)
.+.++|||||++|.|+..|.+++..++.++...++ . .......+.....+..+...+.+.+|+++|-.+ .
T Consensus 211 ~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~l~----~-~L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmv-----e 280 (357)
T PRK11760 211 PGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGPMA----Q-SLMDTGQVEHLRADGFKFRPPRKNVDWLVCDMV-----E 280 (357)
T ss_pred CCCEEEEeCCCCcHHHHHHHHcCCEEEEEechhcC----H-hhhCCCCEEEEeccCcccCCCCCCCCEEEEecc-----c
Confidence 45699999999999999999997544444211111 1 112234566666665444323678999999554 3
Q ss_pred ChHHHHHHHHHcccCC--cEEEEE
Q 009069 298 YDGLYLIEVDRVLRPG--GYWILS 319 (544)
Q Consensus 298 d~~~~L~Ei~RVLKPG--G~Lvis 319 (544)
.|...+.-+.+-|..| ..+|+.
T Consensus 281 ~P~rva~lm~~Wl~~g~cr~aIfn 304 (357)
T PRK11760 281 KPARVAELMAQWLVNGWCREAIFN 304 (357)
T ss_pred CHHHHHHHHHHHHhcCcccEEEEE
Confidence 5677777777777666 455554
No 213
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=96.77 E-value=0.012 Score=60.08 Aligned_cols=86 Identities=17% Similarity=0.201 Sum_probs=61.6
Q ss_pred HHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCC
Q 009069 203 AYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPS 280 (544)
Q Consensus 203 ~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd 280 (544)
..++.|.+.+....++ +||+||+|.|.++..|+++ .++++++++.....-...++ ...+..+..+|+....+++
T Consensus 17 ~v~~kIv~~a~~~~~d--~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~--~~~n~~vi~~DaLk~d~~~ 92 (259)
T COG0030 17 NVIDKIVEAANISPGD--NVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFA--PYDNLTVINGDALKFDFPS 92 (259)
T ss_pred HHHHHHHHhcCCCCCC--eEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhcc--cccceEEEeCchhcCcchh
Confidence 3467777777766644 8999999999999999997 57888886643322221111 2346788888999888876
Q ss_pred C-CeeEEEecccc
Q 009069 281 R-AFDMAHCSRCL 292 (544)
Q Consensus 281 ~-sFDlV~~~~~l 292 (544)
- .++.|+++.-.
T Consensus 93 l~~~~~vVaNlPY 105 (259)
T COG0030 93 LAQPYKVVANLPY 105 (259)
T ss_pred hcCCCEEEEcCCC
Confidence 4 68999988743
No 214
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=96.71 E-value=0.013 Score=61.53 Aligned_cols=102 Identities=9% Similarity=0.034 Sum_probs=63.3
Q ss_pred CCEEEEeCCCCcHHHHHHhhC--------CcEEEeCCccchHHHHHHHHHHcCCCeEE--EEecccc----CCC--CCCC
Q 009069 219 IRTAIDTGCGVASWGAYLMSR--------NILAVSFAPRDTHEAQVQFALERGVPALI--GVMASIR----LPY--PSRA 282 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~--------~V~~vdisp~dls~a~v~~A~ergv~~~~--~v~d~~~----LPf--pd~s 282 (544)
+..++|+|||.|.=+..|++. .+..+|||...+..+..++.......+.+ ..+|... ++- ....
T Consensus 77 ~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~~ 156 (319)
T TIGR03439 77 GSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRSR 156 (319)
T ss_pred CCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccCC
Confidence 337999999999765555432 36788887777765555554233223333 4444322 321 1234
Q ss_pred eeEEEecc-cccccccCh-HHHHHHHHH-cccCCcEEEEEe
Q 009069 283 FDMAHCSR-CLIPWGQYD-GLYLIEVDR-VLRPGGYWILSG 320 (544)
Q Consensus 283 FDlV~~~~-~l~h~~~d~-~~~L~Ei~R-VLKPGG~Lvis~ 320 (544)
..+++.-. .+-.+.... ..+|+++.+ .|+|||.|+|..
T Consensus 157 ~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~ 197 (319)
T TIGR03439 157 PTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGL 197 (319)
T ss_pred ccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEec
Confidence 57777654 443444322 689999999 999999999974
No 215
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=96.61 E-value=0.0051 Score=60.67 Aligned_cols=120 Identities=15% Similarity=0.112 Sum_probs=61.3
Q ss_pred CCCcccHHHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHH--HHHHHH----HcCC
Q 009069 195 TMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEA--QVQFAL----ERGV 264 (544)
Q Consensus 195 ~~F~~ga~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a--~v~~A~----ergv 264 (544)
..|++-....+..+.+.+.+..++ ..+|||||.|......+-. ...++++.+.-...+ +.+... ..+.
T Consensus 21 ~~YGEi~~~~~~~il~~~~l~~~d--vF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~ 98 (205)
T PF08123_consen 21 ETYGEISPEFVSKILDELNLTPDD--VFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGK 98 (205)
T ss_dssp CCGGGCHHHHHHHHHHHTT--TT---EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB
T ss_pred cceeecCHHHHHHHHHHhCCCCCC--EEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhc
Confidence 345666666677777777666555 9999999999765444322 367777766322111 111111 1122
Q ss_pred ---CeEEEEeccccCCCCC---CCeeEEEecccccccccChHHHHHHHHHcccCCcEEEE
Q 009069 265 ---PALIGVMASIRLPYPS---RAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWIL 318 (544)
Q Consensus 265 ---~~~~~v~d~~~LPfpd---~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvi 318 (544)
++.+..+|....++.. ..-|+|+++... |.++....|.+...-||+|-++|-
T Consensus 99 ~~~~v~l~~gdfl~~~~~~~~~s~AdvVf~Nn~~--F~~~l~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 99 RPGKVELIHGDFLDPDFVKDIWSDADVVFVNNTC--FDPDLNLALAELLLELKPGARIIS 156 (205)
T ss_dssp ---EEEEECS-TTTHHHHHHHGHC-SEEEE--TT--T-HHHHHHHHHHHTTS-TT-EEEE
T ss_pred ccccceeeccCccccHhHhhhhcCCCEEEEeccc--cCHHHHHHHHHHHhcCCCCCEEEE
Confidence 3445555543322111 236999998754 444345667788888988877654
No 216
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=96.55 E-value=0.016 Score=62.53 Aligned_cols=102 Identities=15% Similarity=0.080 Sum_probs=69.2
Q ss_pred CCEEEEeCCCCcHHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCC---CeEEEEecccc-CC---CCCCCeeEEEe
Q 009069 219 IRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERGV---PALIGVMASIR-LP---YPSRAFDMAHC 288 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~---~V~~vdisp~dls~a~v~~A~ergv---~~~~~v~d~~~-LP---fpd~sFDlV~~ 288 (544)
+++|||+=|=||.|+.+.+.. .++.||+|...+.-+..++.+ +++ .+.++++|+.. +. -...+||+|+.
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~L-Ng~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIil 296 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAEL-NGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIIL 296 (393)
T ss_pred CCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHh-cCCCccceeeehhhHHHHHHHHHhcCCcccEEEE
Confidence 558999999999999998876 467777777666555544443 343 36788877533 22 23458999997
Q ss_pred cccccc------c--ccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 289 SRCLIP------W--GQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 289 ~~~l~h------~--~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
-.--.- | ..+-..++..+.++|+|||.++++..
T Consensus 297 DPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~ 337 (393)
T COG1092 297 DPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSC 337 (393)
T ss_pred CCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEec
Confidence 321100 0 01114788899999999999999975
No 217
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.54 E-value=0.004 Score=58.01 Aligned_cols=74 Identities=19% Similarity=0.177 Sum_probs=54.4
Q ss_pred CCCEEEEeCCCCcHHHHHH--hh-CCcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEecccc
Q 009069 218 SIRTAIDTGCGVASWGAYL--MS-RNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCL 292 (544)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~L--a~-~~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~sFDlV~~~~~l 292 (544)
++.+++|+|||.|-+.... .+ ..+.++||++..+ +-..+.+.+-.+.+.+.+++...+-+..+.||.++.+.-+
T Consensus 48 Egkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeAL-EIf~rNaeEfEvqidlLqcdildle~~~g~fDtaviNppF 124 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEAL-EIFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVINPPF 124 (185)
T ss_pred cCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHH-HHHhhchHHhhhhhheeeeeccchhccCCeEeeEEecCCC
Confidence 4668999999999665333 22 3688899987555 3333445555677788889988888888999999987744
No 218
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=96.52 E-value=0.0081 Score=61.21 Aligned_cols=85 Identities=19% Similarity=0.197 Sum_probs=59.1
Q ss_pred HHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcC-CCeEEEEeccccCCCCC
Q 009069 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERG-VPALIGVMASIRLPYPS 280 (544)
Q Consensus 204 ~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~A~erg-v~~~~~v~d~~~LPfpd 280 (544)
.++.|.+-.++++++ .||++|.|||.++..|+++ .|.++++++.++.+-..++..... -...+.++|....++|
T Consensus 46 v~~~I~~ka~~k~tD--~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P- 122 (315)
T KOG0820|consen 46 VIDQIVEKADLKPTD--VVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLP- 122 (315)
T ss_pred HHHHHHhccCCCCCC--EEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCc-
Confidence 445666666666665 9999999999999999987 688888888777655443321111 1255666777666554
Q ss_pred CCeeEEEecccc
Q 009069 281 RAFDMAHCSRCL 292 (544)
Q Consensus 281 ~sFDlV~~~~~l 292 (544)
.||.++++.-.
T Consensus 123 -~fd~cVsNlPy 133 (315)
T KOG0820|consen 123 -RFDGCVSNLPY 133 (315)
T ss_pred -ccceeeccCCc
Confidence 59999986633
No 219
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.47 E-value=0.021 Score=56.93 Aligned_cols=95 Identities=16% Similarity=0.145 Sum_probs=64.7
Q ss_pred EEEEeCCCCcHHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCC--eEEEEecccc-C-----CCCCCCeeEEE
Q 009069 221 TAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGVP--ALIGVMASIR-L-----PYPSRAFDMAH 287 (544)
Q Consensus 221 ~VLDIGCGtG~~a~~La~~-----~V~~vdisp~dls~a~v~~A~ergv~--~~~~v~d~~~-L-----Pfpd~sFDlV~ 287 (544)
+.||||.=||..+..++.. .+.++|+......-. .++....|+. +.+.++.+.. | ....++||+|+
T Consensus 76 ~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~-~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDfaF 154 (237)
T KOG1663|consen 76 RTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIG-LELVKLAGVDHKITFIEGPALESLDELLADGESGTFDFAF 154 (237)
T ss_pred eEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHh-HHHHHhccccceeeeeecchhhhHHHHHhcCCCCceeEEE
Confidence 8999999999666555543 588899966544333 3444444543 4555554321 1 13578999998
Q ss_pred ecccccccccChHHHHHHHHHcccCCcEEEEEe
Q 009069 288 CSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 288 ~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
. .||-++-..++.++.++||+||.+++.-
T Consensus 155 v----DadK~nY~~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 155 V----DADKDNYSNYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred E----ccchHHHHHHHHHHHhhcccccEEEEec
Confidence 4 3565544789999999999999999973
No 220
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=96.42 E-value=0.025 Score=58.70 Aligned_cols=79 Identities=14% Similarity=0.212 Sum_probs=53.4
Q ss_pred CCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeCCCCccccccCCCcchhhhHhhhhhHHHHHHhhcceeeee
Q 009069 281 RAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQ 360 (544)
Q Consensus 281 ~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~pp~~w~~~~~~w~~t~e~L~~~~~~ie~la~~l~w~~v~~ 360 (544)
++||+|+..+.+ .-..+--.++..|..+|||||+++=.+|-.+. ..+..-....-.++-..+.+..+++.++|+.+.+
T Consensus 258 ~~~d~VvTcfFI-DTa~NileYi~tI~~iLk~GGvWiNlGPLlYH-F~d~~g~~~~~siEls~edl~~v~~~~GF~~~ke 335 (369)
T KOG2798|consen 258 GSYDVVVTCFFI-DTAHNILEYIDTIYKILKPGGVWINLGPLLYH-FEDTHGVENEMSIELSLEDLKRVASHRGFEVEKE 335 (369)
T ss_pred CccceEEEEEEe-echHHHHHHHHHHHHhccCCcEEEeccceeee-ccCCCCCcccccccccHHHHHHHHHhcCcEEEEe
Confidence 469999976533 33333468999999999999999998874331 1111111122344455677888999999999887
Q ss_pred e
Q 009069 361 K 361 (544)
Q Consensus 361 ~ 361 (544)
+
T Consensus 336 ~ 336 (369)
T KOG2798|consen 336 R 336 (369)
T ss_pred e
Confidence 6
No 221
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=96.41 E-value=0.053 Score=53.90 Aligned_cols=94 Identities=15% Similarity=0.142 Sum_probs=60.2
Q ss_pred CCEEEEeCCCCcHHHHHHh----hCCcEEEeCCccchHHHHHH-HHHHcCCC-eEEEEeccccCCCCCCCeeEEEecccc
Q 009069 219 IRTAIDTGCGVASWGAYLM----SRNILAVSFAPRDTHEAQVQ-FALERGVP-ALIGVMASIRLPYPSRAFDMAHCSRCL 292 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La----~~~V~~vdisp~dls~a~v~-~A~ergv~-~~~~v~d~~~LPfpd~sFDlV~~~~~l 292 (544)
..+++|||.|.|--+.-|+ +.+++.+|-..+-+ +.++ .+.+-+.+ +.+....++...-...-||+|.|..+.
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~--~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAva 145 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKI--AFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAVA 145 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHH--HHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehcc
Confidence 4589999999996655554 23566666544322 2222 33344665 777777777665221129999986543
Q ss_pred cccccChHHHHHHHHHcccCCcEEEEE
Q 009069 293 IPWGQYDGLYLIEVDRVLRPGGYWILS 319 (544)
Q Consensus 293 ~h~~~d~~~~L~Ei~RVLKPGG~Lvis 319 (544)
....++.-+...||+||.++.-
T Consensus 146 -----~L~~l~e~~~pllk~~g~~~~~ 167 (215)
T COG0357 146 -----SLNVLLELCLPLLKVGGGFLAY 167 (215)
T ss_pred -----chHHHHHHHHHhcccCCcchhh
Confidence 3456777788899999987643
No 222
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=96.35 E-value=0.012 Score=61.42 Aligned_cols=99 Identities=10% Similarity=0.074 Sum_probs=59.4
Q ss_pred CCCEEEEeCCCCcHHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCC--eEEEEeccccCCCCCCCeeEEEecccc
Q 009069 218 SIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERGVP--ALIGVMASIRLPYPSRAFDMAHCSRCL 292 (544)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~---~V~~vdisp~dls~a~v~~A~ergv~--~~~~v~d~~~LPfpd~sFDlV~~~~~l 292 (544)
.++.|||+|||+|.+....++. .|.+++-+. | .+.+.++...+.+. +.++.+..+...+| +..|+|++-..-
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~-M-AqyA~~Lv~~N~~~~rItVI~GKiEdieLP-Ek~DviISEPMG 253 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASE-M-AQYARKLVASNNLADRITVIPGKIEDIELP-EKVDVIISEPMG 253 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhCcceEEEEehhH-H-HHHHHHHHhcCCccceEEEccCccccccCc-hhccEEEeccch
Confidence 4678999999999877766665 566666533 2 23333344444443 44455556666655 568999985433
Q ss_pred cccccCh-HHHHHHHHHcccCCcEEEEE
Q 009069 293 IPWGQYD-GLYLIEVDRVLRPGGYWILS 319 (544)
Q Consensus 293 ~h~~~d~-~~~L~Ei~RVLKPGG~Lvis 319 (544)
.-+..+. -+..--+.|.|||.|..+=.
T Consensus 254 ~mL~NERMLEsYl~Ark~l~P~GkMfPT 281 (517)
T KOG1500|consen 254 YMLVNERMLESYLHARKWLKPNGKMFPT 281 (517)
T ss_pred hhhhhHHHHHHHHHHHhhcCCCCcccCc
Confidence 2222211 12223356899999987654
No 223
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.33 E-value=0.00075 Score=63.73 Aligned_cols=134 Identities=15% Similarity=0.265 Sum_probs=77.0
Q ss_pred CCEEEEeCCCCcHHHHHHhh-C----CcEEEeCCccchHHHHHHHHHHcCC-----CeEEEEec--cccCCCCCCCeeEE
Q 009069 219 IRTAIDTGCGVASWGAYLMS-R----NILAVSFAPRDTHEAQVQFALERGV-----PALIGVMA--SIRLPYPSRAFDMA 286 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~-~----~V~~vdisp~dls~a~v~~A~ergv-----~~~~~v~d--~~~LPfpd~sFDlV 286 (544)
++.||++|.|.-.++..|.. . .|..+|= ++.+...++....++. .......+ ..+......+||.|
T Consensus 30 g~~ilelgggft~laglmia~~a~~~~v~ltdg--ne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiI 107 (201)
T KOG3201|consen 30 GRRILELGGGFTGLAGLMIACKAPDSSVWLTDG--NEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDII 107 (201)
T ss_pred HHHHHHhcCchhhhhhhheeeecCCceEEEecC--CHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEE
Confidence 45899999996555444433 2 3554544 2333333333332221 01000001 11122334689999
Q ss_pred EecccccccccChHHHHHHHHHcccCCcEEEEEeCCCCccccccCCCcchhhhHhhhhhHHHHHHhhcceeee-eeccEE
Q 009069 287 HCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLI-QKKDLA 365 (544)
Q Consensus 287 ~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~pp~~w~~~~~~w~~t~e~L~~~~~~ie~la~~l~w~~v~-~~~~~a 365 (544)
+|+.|+ .+.+..+.+++.|.+.|||.|..++..|. ....|+. ..+..+..+|.... +..+.+
T Consensus 108 laADCl-FfdE~h~sLvdtIk~lL~p~g~Al~fsPR------------Rg~sL~k----F~de~~~~gf~v~l~enyde~ 170 (201)
T KOG3201|consen 108 LAADCL-FFDEHHESLVDTIKSLLRPSGRALLFSPR------------RGQSLQK----FLDEVGTVGFTVCLEENYDEA 170 (201)
T ss_pred Eeccch-hHHHHHHHHHHHHHHHhCcccceeEecCc------------ccchHHH----HHHHHHhceeEEEecccHhHH
Confidence 999998 55554488999999999999998888872 2223332 33445555665544 444578
Q ss_pred EEeccC
Q 009069 366 IWQKPT 371 (544)
Q Consensus 366 IwqKP~ 371 (544)
||||-.
T Consensus 171 iwqrh~ 176 (201)
T KOG3201|consen 171 IWQRHG 176 (201)
T ss_pred HHHHHH
Confidence 888753
No 224
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=96.28 E-value=0.082 Score=54.07 Aligned_cols=126 Identities=18% Similarity=0.231 Sum_probs=82.4
Q ss_pred HHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC-----CcEEEeCCccchHHHHHHHHH----HcCC--CeEEEEecc
Q 009069 205 IDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFAL----ERGV--PALIGVMAS 273 (544)
Q Consensus 205 i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-----~V~~vdisp~dls~a~v~~A~----ergv--~~~~~v~d~ 273 (544)
+..|..+|...+|+ +||+-|.|+|++..++++. .+...|+ ++...+.|+ +.++ .+.+.+-|.
T Consensus 94 ia~I~~~L~i~PGs--vV~EsGTGSGSlShaiaraV~ptGhl~tfef-----H~~Ra~ka~eeFr~hgi~~~vt~~hrDV 166 (314)
T KOG2915|consen 94 IAMILSMLEIRPGS--VVLESGTGSGSLSHAIARAVAPTGHLYTFEF-----HETRAEKALEEFREHGIGDNVTVTHRDV 166 (314)
T ss_pred HHHHHHHhcCCCCC--EEEecCCCcchHHHHHHHhhCcCcceEEEEe-----cHHHHHHHHHHHHHhCCCcceEEEEeec
Confidence 45677888888887 9999999999998888875 4666666 333333333 3444 466777777
Q ss_pred ccCCCC--CCCeeEEEecccccccccChHHHHHHHHHcccCCc-EEEEEeCCCCccccccCCCcchhhhHhhhhhHHHHH
Q 009069 274 IRLPYP--SRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGG-YWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIA 350 (544)
Q Consensus 274 ~~LPfp--d~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG-~Lvis~pp~~w~~~~~~w~~t~e~L~~~~~~ie~la 350 (544)
....|. +..+|.|+.-. +. |-.++--++.+||-+| +|+--.| -+++.+. --+++
T Consensus 167 c~~GF~~ks~~aDaVFLDl-----Pa-Pw~AiPha~~~lk~~g~r~csFSP----------------CIEQvqr-tce~l 223 (314)
T KOG2915|consen 167 CGSGFLIKSLKADAVFLDL-----PA-PWEAIPHAAKILKDEGGRLCSFSP----------------CIEQVQR-TCEAL 223 (314)
T ss_pred ccCCccccccccceEEEcC-----CC-hhhhhhhhHHHhhhcCceEEeccH----------------HHHHHHH-HHHHH
Confidence 776665 57899998633 32 5566777777999877 4443333 1222233 33467
Q ss_pred Hhhcceeeee
Q 009069 351 RSLCWKKLIQ 360 (544)
Q Consensus 351 ~~l~w~~v~~ 360 (544)
.+++|..+..
T Consensus 224 ~~~gf~~i~~ 233 (314)
T KOG2915|consen 224 RSLGFIEIET 233 (314)
T ss_pred HhCCCceEEE
Confidence 7788866653
No 225
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=96.27 E-value=0.041 Score=58.22 Aligned_cols=117 Identities=14% Similarity=0.093 Sum_probs=80.5
Q ss_pred CCCcccHHHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCC--eEEE
Q 009069 195 TMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERGVP--ALIG 269 (544)
Q Consensus 195 ~~F~~ga~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---~V~~vdisp~dls~a~v~~A~ergv~--~~~~ 269 (544)
.+|..+...--.++.++. ..|+ +|||+=+|.|.|+..++.. .|.++|+.|..+. ...+.++.+++. +...
T Consensus 169 v~Fsprl~~ER~Rva~~v--~~GE--~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~-~L~eNi~LN~v~~~v~~i 243 (341)
T COG2520 169 VYFSPRLSTERARVAELV--KEGE--TVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVE-YLKENIRLNKVEGRVEPI 243 (341)
T ss_pred eEECCCchHHHHHHHhhh--cCCC--EEEEccCCcccchhhhhhcCCceEEEEecCHHHHH-HHHHHHHhcCccceeeEE
Confidence 334444333333455444 2344 9999999999999998876 3788899886654 333444444443 5567
Q ss_pred EeccccCCCCCCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 270 VMASIRLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 270 v~d~~~LPfpd~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
.+|....+..-+.||-|+.... .....++..+.+.|++||.+-+-..
T Consensus 244 ~gD~rev~~~~~~aDrIim~~p-----~~a~~fl~~A~~~~k~~g~iHyy~~ 290 (341)
T COG2520 244 LGDAREVAPELGVADRIIMGLP-----KSAHEFLPLALELLKDGGIIHYYEF 290 (341)
T ss_pred eccHHHhhhccccCCEEEeCCC-----CcchhhHHHHHHHhhcCcEEEEEec
Confidence 7888777766588999998552 2346899999999999999988754
No 226
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=96.16 E-value=0.014 Score=56.94 Aligned_cols=99 Identities=19% Similarity=0.195 Sum_probs=64.6
Q ss_pred CCCEEEEeCCCCcHHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEecccccc
Q 009069 218 SIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIP 294 (544)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~---~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~sFDlV~~~~~l~h 294 (544)
.+++|||+|.|+|..+..-+.. .+...|+.|.-. .+..-.+..+++.+.+...|... .+..||+|+.+.++..
T Consensus 79 rgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~-~ai~lNa~angv~i~~~~~d~~g---~~~~~Dl~LagDlfy~ 154 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLE-QAIRLNAAANGVSILFTHADLIG---SPPAFDLLLAGDLFYN 154 (218)
T ss_pred ccceeeecccccChHHHHHHHhhhHHHHhcCCChHHH-HHhhcchhhccceeEEeeccccC---CCcceeEEEeeceecC
Confidence 3669999999999766665554 577788875322 23323344567666666544333 6678999999887743
Q ss_pred cccChHHHHHHHHHcccCCcEEEEEeCC
Q 009069 295 WGQYDGLYLIEVDRVLRPGGYWILSGPP 322 (544)
Q Consensus 295 ~~~d~~~~L~Ei~RVLKPGG~Lvis~pp 322 (544)
-.. ...++. +.+.|+..|.-++.+.|
T Consensus 155 ~~~-a~~l~~-~~~~l~~~g~~vlvgdp 180 (218)
T COG3897 155 HTE-ADRLIP-WKDRLAEAGAAVLVGDP 180 (218)
T ss_pred chH-HHHHHH-HHHHHHhCCCEEEEeCC
Confidence 332 245555 77777777777777654
No 227
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.09 E-value=0.11 Score=52.13 Aligned_cols=144 Identities=18% Similarity=0.150 Sum_probs=91.6
Q ss_pred HHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCCeEEE-EeccccCC--CC
Q 009069 206 DDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERGVPALIG-VMASIRLP--YP 279 (544)
Q Consensus 206 ~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~---~V~~vdisp~dls~a~v~~A~ergv~~~~~-v~d~~~LP--fp 279 (544)
....+.+.+.. .++.+||||.-||.|+..++++ .|.++|+.-..++ ...+....+... ..++..+. .-
T Consensus 68 ~~ale~F~l~~-k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~-----~kLR~d~rV~~~E~tN~r~l~~~~~ 141 (245)
T COG1189 68 EKALEEFELDV-KGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLH-----WKLRNDPRVIVLERTNVRYLTPEDF 141 (245)
T ss_pred HHHHHhcCcCC-CCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccC-----HhHhcCCcEEEEecCChhhCCHHHc
Confidence 34444444432 3568999999999999999998 4778888554443 333334333322 22222222 11
Q ss_pred CCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeCCCCccc----cccCCCcchhhhHhhhhhHHHHHHhhcc
Q 009069 280 SRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPPVNWES----HWKGWNRTTEDLKSEQNGIETIARSLCW 355 (544)
Q Consensus 280 d~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~pp~~w~~----~~~~w~~t~e~L~~~~~~ie~la~~l~w 355 (544)
.+..|+|+|--+++. ...+|..+..+|+|+|.++.-.-|..-.. ..++-.+.++.......+++..++..+|
T Consensus 142 ~~~~d~~v~DvSFIS----L~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGvv~d~~~~~~v~~~i~~~~~~~g~ 217 (245)
T COG1189 142 TEKPDLIVIDVSFIS----LKLILPALLLLLKDGGDLVLLVKPQFEAGREQVGKKGVVRDPKLHAEVLSKIENFAKELGF 217 (245)
T ss_pred ccCCCeEEEEeehhh----HHHHHHHHHHhcCCCceEEEEecchhhhhhhhcCcCceecCcchHHHHHHHHHHHHhhcCc
Confidence 236789998776532 46899999999999999888653332111 1223345555666667788899999999
Q ss_pred eeee
Q 009069 356 KKLI 359 (544)
Q Consensus 356 ~~v~ 359 (544)
....
T Consensus 218 ~~~g 221 (245)
T COG1189 218 QVKG 221 (245)
T ss_pred EEee
Confidence 8765
No 228
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=96.02 E-value=0.018 Score=61.81 Aligned_cols=95 Identities=9% Similarity=0.123 Sum_probs=67.2
Q ss_pred CEEEEeCCCCcHHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEeccccCC-CCCCCeeEEEecccc
Q 009069 220 RTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRLP-YPSRAFDMAHCSRCL 292 (544)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~-----~V~~vdisp~dls~a~v~~A~ergv-~~~~~v~d~~~LP-fpd~sFDlV~~~~~l 292 (544)
-+|||+.||+|..+..++.+ .|+++|+++..+.....+ +..+++ .+.+...|+..+- .....||+|..-.
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N-~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-- 122 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNN-VEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-- 122 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHH-HHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC--
Confidence 37999999999999999875 378889987655433333 333344 3566666654432 1235799998744
Q ss_pred cccccChHHHHHHHHHcccCCcEEEEEe
Q 009069 293 IPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 293 ~h~~~d~~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
+. .+..++..+.+.+++||++.++.
T Consensus 123 --fG-s~~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 123 --FG-TPAPFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred --CC-CcHHHHHHHHHhcccCCEEEEEe
Confidence 22 34689999999999999999983
No 229
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=96.00 E-value=0.063 Score=57.26 Aligned_cols=109 Identities=19% Similarity=0.272 Sum_probs=67.8
Q ss_pred HHhcccCCCCCEEEEeCCCCcHHHHHHhhC-----C-cEEEeCCccchHHHHHHHHHHcCCC-eEEEEeccccCC--CC-
Q 009069 210 KLINLKDGSIRTAIDTGCGVASWGAYLMSR-----N-ILAVSFAPRDTHEAQVQFALERGVP-ALIGVMASIRLP--YP- 279 (544)
Q Consensus 210 ~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-----~-V~~vdisp~dls~a~v~~A~ergv~-~~~~v~d~~~LP--fp- 279 (544)
.++...++ .+|||+.++.|+=+.++++. . |++.|+++.-+. ...+...+-|+. +.....|...++ .+
T Consensus 150 ~~L~p~pg--e~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~-~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~ 226 (355)
T COG0144 150 LVLDPKPG--ERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLK-RLRENLKRLGVRNVIVVNKDARRLAELLPG 226 (355)
T ss_pred HHcCCCCc--CEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHH-HHHHHHHHcCCCceEEEecccccccccccc
Confidence 34444554 49999999999766666654 2 478888664442 233334444654 456666665554 22
Q ss_pred CCCeeEEEe------cccccc-----c--ccC--------hHHHHHHHHHcccCCcEEEEEeC
Q 009069 280 SRAFDMAHC------SRCLIP-----W--GQY--------DGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 280 d~sFDlV~~------~~~l~h-----~--~~d--------~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
.+.||.|+. ..++.. | ... +..+|..+.++|||||.|+.++-
T Consensus 227 ~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTC 289 (355)
T COG0144 227 GEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTC 289 (355)
T ss_pred cCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEcc
Confidence 235999995 222211 1 111 13789999999999999999964
No 230
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=95.98 E-value=0.054 Score=62.79 Aligned_cols=102 Identities=14% Similarity=0.023 Sum_probs=63.8
Q ss_pred CCEEEEeCCCCcHHHHHHhhC----------------------------------------------CcEEEeCCccchH
Q 009069 219 IRTAIDTGCGVASWGAYLMSR----------------------------------------------NILAVSFAPRDTH 252 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~----------------------------------------------~V~~vdisp~dls 252 (544)
+..++|.+||+|++....+.. .++++|+++..+.
T Consensus 191 ~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av~ 270 (702)
T PRK11783 191 GTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVIQ 270 (702)
T ss_pred CCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHHH
Confidence 348999999999887665321 3677888776665
Q ss_pred HHHHHHHHHcCCC--eEEEEeccccCCCC--CCCeeEEEecccccccccCh---HHHHHHHHHc---ccCCcEEEEEeC
Q 009069 253 EAQVQFALERGVP--ALIGVMASIRLPYP--SRAFDMAHCSRCLIPWGQYD---GLYLIEVDRV---LRPGGYWILSGP 321 (544)
Q Consensus 253 ~a~v~~A~ergv~--~~~~v~d~~~LPfp--d~sFDlV~~~~~l~h~~~d~---~~~L~Ei~RV---LKPGG~Lvis~p 321 (544)
.+..+. ...|+. +.+...|...++.+ .++||+|+++.-+..-..+. ..+..++-+. +.+|+.+++.++
T Consensus 271 ~A~~N~-~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~~~g~~~~llt~ 348 (702)
T PRK11783 271 AARKNA-RRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQFGGWNAALFSS 348 (702)
T ss_pred HHHHHH-HHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 554433 334553 67778888777654 35799999997432222111 2333343344 448988877543
No 231
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=95.91 E-value=0.13 Score=50.13 Aligned_cols=135 Identities=15% Similarity=0.119 Sum_probs=77.5
Q ss_pred CCceecCCCCCCCcccHHHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhCC---cEEEeCCccchHHHHHHHHHH
Q 009069 185 GDRFSFPGGGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN---ILAVSFAPRDTHEAQVQFALE 261 (544)
Q Consensus 185 ge~~~F~g~g~~F~~ga~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~---V~~vdisp~dls~a~v~~A~e 261 (544)
|..+..|.+. ......+..-+.+-.++....-.+.++||+=+|+|.++...+.+| ++.+|.+.........+ ...
T Consensus 11 gr~L~~p~~~-~~RPT~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N-~~~ 88 (187)
T COG0742 11 GRKLKTPDGP-GTRPTTDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKEN-LKA 88 (187)
T ss_pred CCcccCCCCC-CcCCCchHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHH-HHH
Confidence 4444555442 223445555566666665322345589999999999999999984 66777755433222222 222
Q ss_pred cC--CCeEEEEeccccC-CCCCC--CeeEEEecccccccccChHHHHHH--HHHcccCCcEEEEEeC
Q 009069 262 RG--VPALIGVMASIRL-PYPSR--AFDMAHCSRCLIPWGQYDGLYLIE--VDRVLRPGGYWILSGP 321 (544)
Q Consensus 262 rg--v~~~~~v~d~~~L-Pfpd~--sFDlV~~~~~l~h~~~d~~~~L~E--i~RVLKPGG~Lvis~p 321 (544)
-+ ....+...|+... +-... .||+|+.-.-++.-.-+....+.. -...|+|+|.+++...
T Consensus 89 l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~ 155 (187)
T COG0742 89 LGLEGEARVLRNDALRALKQLGTREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEHD 155 (187)
T ss_pred hCCccceEEEeecHHHHHHhcCCCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeC
Confidence 23 3456666665532 22223 499999877442111111222223 4567999999999865
No 232
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=95.90 E-value=0.017 Score=61.40 Aligned_cols=94 Identities=14% Similarity=0.105 Sum_probs=53.2
Q ss_pred EEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEeccccCC----------------CCCC
Q 009069 221 TAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRLP----------------YPSR 281 (544)
Q Consensus 221 ~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~A~ergv-~~~~~v~d~~~LP----------------fpd~ 281 (544)
.|||+-||+|.|+..|++. .|+++++.+.++..+.. .|..+++ ++.+..++++.+. ....
T Consensus 199 ~vlDlycG~G~fsl~la~~~~~V~gvE~~~~av~~A~~-Na~~N~i~n~~f~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 277 (352)
T PF05958_consen 199 DVLDLYCGVGTFSLPLAKKAKKVIGVEIVEEAVEDARE-NAKLNGIDNVEFIRGDAEDFAKALAKAREFNRLKGIDLKSF 277 (352)
T ss_dssp EEEEES-TTTCCHHHHHCCSSEEEEEES-HHHHHHHHH-HHHHTT--SEEEEE--SHHCCCHHCCS-GGTTGGGS-GGCT
T ss_pred cEEEEeecCCHHHHHHHhhCCeEEEeeCCHHHHHHHHH-HHHHcCCCcceEEEeeccchhHHHHhhHHHHhhhhhhhhhc
Confidence 6999999999999999986 68888887766654444 4445555 5777766554321 1233
Q ss_pred CeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 282 AFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 282 sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
.+|+|+.-.-.-... ..++..+. ++.-.+++|-.
T Consensus 278 ~~d~vilDPPR~G~~---~~~~~~~~---~~~~ivYvSCn 311 (352)
T PF05958_consen 278 KFDAVILDPPRAGLD---EKVIELIK---KLKRIVYVSCN 311 (352)
T ss_dssp TESEEEE---TT-SC---HHHHHHHH---HSSEEEEEES-
T ss_pred CCCEEEEcCCCCCch---HHHHHHHh---cCCeEEEEECC
Confidence 689987633221111 34444443 34456666643
No 233
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=95.89 E-value=0.034 Score=54.25 Aligned_cols=142 Identities=14% Similarity=0.085 Sum_probs=71.8
Q ss_pred hcccCCCCCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHH-------HHHHHHHHcCC-CeEEEEeccccCC--
Q 009069 212 INLKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHE-------AQVQFALERGV-PALIGVMASIRLP-- 277 (544)
Q Consensus 212 L~l~~g~~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~-------a~v~~A~ergv-~~~~~v~d~~~LP-- 277 (544)
..++++. +|+|+=-|.|.|++-++.. | .+..+.|.+... .....+++... +....-...-.++
T Consensus 44 aGlkpg~--tVid~~PGgGy~TrI~s~~vgp~G-~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~~p 120 (238)
T COG4798 44 AGLKPGA--TVIDLIPGGGYFTRIFSPAVGPKG-KVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALGAP 120 (238)
T ss_pred eccCCCC--EEEEEecCCccHhhhhchhcCCce-eEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccCCC
Confidence 3456655 9999999999999988764 4 345555544311 11111111110 1111111111222
Q ss_pred -----CCCCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeCCCCccccccCCCcchhhhHhhhhhHHHHHHh
Q 009069 278 -----YPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARS 352 (544)
Q Consensus 278 -----fpd~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~pp~~w~~~~~~w~~t~e~L~~~~~~ie~la~~ 352 (544)
.+..++|.++...-+ | ....+.+..++++.|||||.+++.++...--... ..+....+..-..+....+.
T Consensus 121 q~~d~~~~~~~yhdmh~k~i-~-~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~---~dt~~~~ri~~a~V~a~vea 195 (238)
T COG4798 121 QKLDLVPTAQNYHDMHNKNI-H-PATAAKVNAAVFKALKPGGVYLVEDHRADPGSGL---SDTITLHRIDPAVVIAEVEA 195 (238)
T ss_pred Ccccccccchhhhhhhcccc-C-cchHHHHHHHHHHhcCCCcEEEEEeccccCCCCh---hhhhhhcccChHHHHHHHHh
Confidence 122344444433333 2 2223789999999999999999986522210000 01111111112334556677
Q ss_pred hcceeeeee
Q 009069 353 LCWKKLIQK 361 (544)
Q Consensus 353 l~w~~v~~~ 361 (544)
.+|+...+.
T Consensus 196 aGFkl~aeS 204 (238)
T COG4798 196 AGFKLEAES 204 (238)
T ss_pred hcceeeeee
Confidence 788776653
No 234
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=95.71 E-value=0.014 Score=60.69 Aligned_cols=85 Identities=12% Similarity=0.085 Sum_probs=53.9
Q ss_pred HHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCC-
Q 009069 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLP- 277 (544)
Q Consensus 204 ~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-----~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LP- 277 (544)
.++++.+.+...++. .+||.+||.|..+..+++. .|+++|.++.++..+...+.. ..++.+...+...+.
T Consensus 7 ll~Evl~~L~~~pg~--~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~--~~ri~~i~~~f~~l~~ 82 (296)
T PRK00050 7 LLDEVVDALAIKPDG--IYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP--FGRFTLVHGNFSNLKE 82 (296)
T ss_pred cHHHHHHhhCCCCCC--EEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc--CCcEEEEeCCHHHHHH
Confidence 345666666555544 8999999999999999876 367777766555444432221 235677776655432
Q ss_pred -CCC--CCeeEEEecccc
Q 009069 278 -YPS--RAFDMAHCSRCL 292 (544)
Q Consensus 278 -fpd--~sFDlV~~~~~l 292 (544)
.++ .++|.|++....
T Consensus 83 ~l~~~~~~vDgIl~DLGv 100 (296)
T PRK00050 83 VLAEGLGKVDGILLDLGV 100 (296)
T ss_pred HHHcCCCccCEEEECCCc
Confidence 111 279999975433
No 235
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=95.70 E-value=0.056 Score=53.89 Aligned_cols=99 Identities=19% Similarity=0.236 Sum_probs=66.4
Q ss_pred ccCCCCCEEEEeCCCCcHHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCC----CCCCCee
Q 009069 214 LKDGSIRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLP----YPSRAFD 284 (544)
Q Consensus 214 l~~g~~r~VLDIGCGtG~~a~~La~~-----~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LP----fpd~sFD 284 (544)
+++++ +||-+|..+|+...++++- -|.++++++... ...+..|.+|. ++.-...|+. .| .--+.+|
T Consensus 71 ik~gs--kVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~-rdL~~la~~R~-NIiPIl~DAr-~P~~Y~~lv~~VD 145 (229)
T PF01269_consen 71 IKPGS--KVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSM-RDLLNLAKKRP-NIIPILEDAR-HPEKYRMLVEMVD 145 (229)
T ss_dssp --TT---EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHH-HHHHHHHHHST-TEEEEES-TT-SGGGGTTTS--EE
T ss_pred CCCCC--EEEEecccCCCccchhhhccCCCCcEEEEEecchhH-HHHHHHhccCC-ceeeeeccCC-ChHHhhccccccc
Confidence 44444 9999999999888888763 378999999655 56667887774 4444445543 33 1124799
Q ss_pred EEEecccccccccChHHHHHHHHHcccCCcEEEEEe
Q 009069 285 MAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 285 lV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
+|++--+ -+++.+.++..+...||+||.|+++.
T Consensus 146 vI~~DVa---Qp~Qa~I~~~Na~~fLk~gG~~~i~i 178 (229)
T PF01269_consen 146 VIFQDVA---QPDQARIAALNARHFLKPGGHLIISI 178 (229)
T ss_dssp EEEEE-S---STTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEecCC---ChHHHHHHHHHHHhhccCCcEEEEEE
Confidence 9998542 22323678888889999999999984
No 236
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=95.70 E-value=0.042 Score=56.89 Aligned_cols=102 Identities=14% Similarity=0.104 Sum_probs=63.9
Q ss_pred CCEEEEeCCCCcHHHHHHhhCC---cEEEeCCccchHHHHHHHHHHcCC---CeEEEEecccc-CC--CCCCCeeEEEec
Q 009069 219 IRTAIDTGCGVASWGAYLMSRN---ILAVSFAPRDTHEAQVQFALERGV---PALIGVMASIR-LP--YPSRAFDMAHCS 289 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~---V~~vdisp~dls~a~v~~A~ergv---~~~~~v~d~~~-LP--fpd~sFDlV~~~ 289 (544)
+++|||+=|=||+|+.+.+..| ++.+|.|...+..+..+++. +++ .+.+...|... +. -..++||+|++-
T Consensus 124 gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~l-Ng~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIlD 202 (286)
T PF10672_consen 124 GKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAAL-NGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIILD 202 (286)
T ss_dssp TCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHH-TT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE-
T ss_pred CCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH-cCCCccceEEEecCHHHHHHHHhcCCCCCEEEEC
Confidence 4489999999999999887764 67778877666655555544 333 46777777533 11 124689999983
Q ss_pred cccc-----ccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 290 RCLI-----PWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 290 ~~l~-----h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
.--. ....+-..++..+.++|+|||.|++...
T Consensus 203 PPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~sc 239 (286)
T PF10672_consen 203 PPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSC 239 (286)
T ss_dssp -SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE-
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 2110 0111114678889999999999998865
No 237
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=95.64 E-value=0.047 Score=54.08 Aligned_cols=109 Identities=15% Similarity=0.165 Sum_probs=68.0
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhCCc---EEEeCCccchHHHHHHHHHHcCC----CeEEEEeccc
Q 009069 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNI---LAVSFAPRDTHEAQVQFALERGV----PALIGVMASI 274 (544)
Q Consensus 202 ~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~V---~~vdisp~dls~a~v~~A~ergv----~~~~~v~d~~ 274 (544)
..+++.+++.+..+ +++||.||-|-|...-.+.++.. .+++.-| ...+..++.|. ++.+..+--+
T Consensus 88 tpiMha~A~ai~tk---ggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp-----~V~krmr~~gw~ek~nViil~g~We 159 (271)
T KOG1709|consen 88 TPIMHALAEAISTK---GGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHP-----DVLKRMRDWGWREKENVIILEGRWE 159 (271)
T ss_pred hHHHHHHHHHHhhC---CceEEEeccchHHHHHHHhhcCCcceEEEecCH-----HHHHHHHhcccccccceEEEecchH
Confidence 34555566665433 45799999999998888887732 3444433 33333333332 3333333211
Q ss_pred c-C-CCCCCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEE
Q 009069 275 R-L-PYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILS 319 (544)
Q Consensus 275 ~-L-Pfpd~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis 319 (544)
+ + .++|+.||-|+--- +....++...+.+-+.|+|||+|.|-+-
T Consensus 160 Dvl~~L~d~~FDGI~yDT-y~e~yEdl~~~hqh~~rLLkP~gv~Syf 205 (271)
T KOG1709|consen 160 DVLNTLPDKHFDGIYYDT-YSELYEDLRHFHQHVVRLLKPEGVFSYF 205 (271)
T ss_pred hhhccccccCcceeEeec-hhhHHHHHHHHHHHHhhhcCCCceEEEe
Confidence 1 1 25788999998633 3244445678889999999999998765
No 238
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=95.45 E-value=0.12 Score=55.27 Aligned_cols=98 Identities=16% Similarity=0.207 Sum_probs=72.2
Q ss_pred CEEEEeCCCCcHHHHHHhhCC-------------------------------------------cEEEeCCccchHHHHH
Q 009069 220 RTAIDTGCGVASWGAYLMSRN-------------------------------------------ILAVSFAPRDTHEAQV 256 (544)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~~-------------------------------------------V~~vdisp~dls~a~v 256 (544)
..++|-=||+|++....+-.+ +.++|+++..+..+.
T Consensus 193 ~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak- 271 (381)
T COG0116 193 EPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEGAK- 271 (381)
T ss_pred CccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHHHH-
Confidence 479999999999887765432 558999888775444
Q ss_pred HHHHHcCCC--eEEEEeccccCCCCCCCeeEEEecccccccccCh----------HHHHHHHHHcccCCcEEEEEeC
Q 009069 257 QFALERGVP--ALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYD----------GLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 257 ~~A~ergv~--~~~~v~d~~~LPfpd~sFDlV~~~~~l~h~~~d~----------~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
..|+..|+. +.|.++|...++-+-+.+|+|+|+. ++.... ..+.+.+.+.++-.+.++++++
T Consensus 272 ~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NP---PYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt~ 345 (381)
T COG0116 272 ANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNP---PYGERLGSEALVAKLYREFGRTLKRLLAGWSRYVFTTS 345 (381)
T ss_pred HHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCC---CcchhcCChhhHHHHHHHHHHHHHHHhcCCceEEEEcc
Confidence 456666765 7889999888875547899999987 433211 2455667788888889999875
No 239
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=95.19 E-value=0.042 Score=55.86 Aligned_cols=101 Identities=16% Similarity=0.170 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHHHHH---cCCCeEEEEecccc
Q 009069 201 ADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALE---RGVPALIGVMASIR 275 (544)
Q Consensus 201 a~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~A~e---rgv~~~~~v~d~~~ 275 (544)
....++.|.+.+....+. .|||||.|.|.++..|++. .++++++++.. .+...+ ...++.+...|...
T Consensus 15 ~~~~~~~Iv~~~~~~~~~--~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~-----~~~L~~~~~~~~~~~vi~~D~l~ 87 (262)
T PF00398_consen 15 DPNIADKIVDALDLSEGD--TVLEIGPGPGALTRELLKRGKRVIAVEIDPDL-----AKHLKERFASNPNVEVINGDFLK 87 (262)
T ss_dssp HHHHHHHHHHHHTCGTTS--EEEEESSTTSCCHHHHHHHSSEEEEEESSHHH-----HHHHHHHCTTCSSEEEEES-TTT
T ss_pred CHHHHHHHHHhcCCCCCC--EEEEeCCCCccchhhHhcccCcceeecCcHhH-----HHHHHHHhhhcccceeeecchhc
Confidence 355677888888766444 8999999999999999886 58888886532 223323 23468888888888
Q ss_pred CCCCC---CCeeEEEecccccccccChHHHHHHHHHcccC
Q 009069 276 LPYPS---RAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRP 312 (544)
Q Consensus 276 LPfpd---~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKP 312 (544)
+..+. +.-..|+++. ++.- ...++..+...-+.
T Consensus 88 ~~~~~~~~~~~~~vv~Nl---Py~i-s~~il~~ll~~~~~ 123 (262)
T PF00398_consen 88 WDLYDLLKNQPLLVVGNL---PYNI-SSPILRKLLELYRF 123 (262)
T ss_dssp SCGGGHCSSSEEEEEEEE---TGTG-HHHHHHHHHHHGGG
T ss_pred cccHHhhcCCceEEEEEe---cccc-hHHHHHHHhhcccc
Confidence 77654 4566777765 3321 24666666664344
No 240
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=94.73 E-value=0.06 Score=55.58 Aligned_cols=102 Identities=19% Similarity=0.197 Sum_probs=63.5
Q ss_pred CCEEEEeCCCCcHHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCC-eEEEEeccccC-C-CCCCCeeEEEe--
Q 009069 219 IRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGVP-ALIGVMASIRL-P-YPSRAFDMAHC-- 288 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~-----~V~~vdisp~dls~a~v~~A~ergv~-~~~~v~d~~~L-P-fpd~sFDlV~~-- 288 (544)
+..|||+.+|.|.=+..+++. .+.+.|++..-+..-. +.+.+-|+. +.....|.... + .....||.|+.
T Consensus 86 ~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~-~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~VlvDa 164 (283)
T PF01189_consen 86 GERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLK-ENLKRLGVFNVIVINADARKLDPKKPESKFDRVLVDA 164 (283)
T ss_dssp TSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHH-HHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEEEC
T ss_pred cccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHH-HHHHhcCCceEEEEeeccccccccccccccchhhcCC
Confidence 448999999999877777654 4788888665443222 233344554 44444565444 1 23346999995
Q ss_pred --ccc--cccccc-------C--------hHHHHHHHHHcc----cCCcEEEEEeC
Q 009069 289 --SRC--LIPWGQ-------Y--------DGLYLIEVDRVL----RPGGYWILSGP 321 (544)
Q Consensus 289 --~~~--l~h~~~-------d--------~~~~L~Ei~RVL----KPGG~Lvis~p 321 (544)
+.. +..-++ . +..+|..+.+.| ||||+++.++-
T Consensus 165 PCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTC 220 (283)
T PF01189_consen 165 PCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTC 220 (283)
T ss_dssp SCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEES
T ss_pred CccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEec
Confidence 222 111110 0 137889999999 99999999964
No 241
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=94.63 E-value=0.23 Score=52.83 Aligned_cols=137 Identities=18% Similarity=0.145 Sum_probs=81.6
Q ss_pred cCCcee-cCCCCCCCcccHHHHHHHHHHHhccc-CCCCCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHH
Q 009069 184 QGDRFS-FPGGGTMFPRGADAYIDDIGKLINLK-DGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQ 257 (544)
Q Consensus 184 ~ge~~~-F~g~g~~F~~ga~~~i~~L~~lL~l~-~g~~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~ 257 (544)
.|+.++ |.+++-+|...-+....+-.-.-... -...++||-+|.|.|.-++.|.+. .++-+|++|.+++-+...
T Consensus 253 ~g~d~rLYldG~LQfsTrDe~RYhEsLV~pals~~~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~ 332 (508)
T COG4262 253 RGDDLRLYLDGGLQFSTRDEYRYHESLVYPALSSVRGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHA 332 (508)
T ss_pred ecCceEEEEcCceeeeechhhhhhheeeecccccccccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhh
Confidence 455555 67777777544332221111111122 123568999999999999999886 588899988887655433
Q ss_pred HHHHc---C----CCeEEEEecccc-CCCCCCCeeEEEecccccccccCh-----HHHHHHHHHcccCCcEEEEEeC
Q 009069 258 FALER---G----VPALIGVMASIR-LPYPSRAFDMAHCSRCLIPWGQYD-----GLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 258 ~A~er---g----v~~~~~v~d~~~-LPfpd~sFDlV~~~~~l~h~~~d~-----~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
..... + ..+.+...|+.. +.-..+.||.|+.-. ..+-.+.. ..+..-+.|.|+++|.+++...
T Consensus 333 ~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~vIVDl-~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQag 408 (508)
T COG4262 333 TVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDVVIVDL-PDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAG 408 (508)
T ss_pred hHhhhhccCCccCCeeEEEeccHHHHHHhhcccccEEEEeC-CCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecC
Confidence 22211 1 234555545322 223456899998632 11111101 4778889999999999999753
No 242
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=94.58 E-value=0.13 Score=55.44 Aligned_cols=78 Identities=19% Similarity=0.259 Sum_probs=44.2
Q ss_pred CCEEEEeCCCCcHHHHHHhhC-------------------CcEEEeCCccchHHHHHHHHHH-------------cCCCe
Q 009069 219 IRTAIDTGCGVASWGAYLMSR-------------------NILAVSFAPRDTHEAQVQFALE-------------RGVPA 266 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~-------------------~V~~vdisp~dls~a~v~~A~e-------------rgv~~ 266 (544)
..+|+|+|||+|..+..+... .+..-|+-.+|...-...+... .+.+.
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~ 143 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRS 143 (386)
T ss_pred ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCc
Confidence 447999999999665544221 2333466666655443332210 11111
Q ss_pred EEEEe---ccccCCCCCCCeeEEEeccccccccc
Q 009069 267 LIGVM---ASIRLPYPSRAFDMAHCSRCLIPWGQ 297 (544)
Q Consensus 267 ~~~v~---d~~~LPfpd~sFDlV~~~~~l~h~~~ 297 (544)
.|..+ ....--||+++.+++|++.++ ||..
T Consensus 144 ~f~~gvpGSFY~RLfP~~Slh~~~Ss~sl-HWLS 176 (386)
T PLN02668 144 YFAAGVPGSFYRRLFPARSIDVFHSAFSL-HWLS 176 (386)
T ss_pred eEEEecCccccccccCCCceEEEEeeccc-eecc
Confidence 22211 222233899999999999999 7765
No 243
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=94.34 E-value=0.22 Score=52.71 Aligned_cols=82 Identities=16% Similarity=0.203 Sum_probs=41.2
Q ss_pred cCCCCCEEEEeCCCCcHHHHHHhhC--------------------CcEEEeCCccchHHHHHHHHHH-----cCCCeEE-
Q 009069 215 KDGSIRTAIDTGCGVASWGAYLMSR--------------------NILAVSFAPRDTHEAQVQFALE-----RGVPALI- 268 (544)
Q Consensus 215 ~~g~~r~VLDIGCGtG~~a~~La~~--------------------~V~~vdisp~dls~a~v~~A~e-----rgv~~~~- 268 (544)
..+..-+|+|+||..|..+..+... .+.--|+-.+|...-...+... ...++..
T Consensus 13 ~~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~ 92 (334)
T PF03492_consen 13 NNPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVS 92 (334)
T ss_dssp TTTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEE
T ss_pred CCCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEE
Confidence 3444568999999999766655431 2445577777776444332221 1122222
Q ss_pred EEe-ccccCCCCCCCeeEEEeccccccccc
Q 009069 269 GVM-ASIRLPYPSRAFDMAHCSRCLIPWGQ 297 (544)
Q Consensus 269 ~v~-d~~~LPfpd~sFDlV~~~~~l~h~~~ 297 (544)
.+. ....--||+++.|+++++.++ ||..
T Consensus 93 gvpgSFy~rLfP~~Svh~~~Ss~al-HWLS 121 (334)
T PF03492_consen 93 GVPGSFYGRLFPSNSVHFGHSSYAL-HWLS 121 (334)
T ss_dssp EEES-TTS--S-TT-EEEEEEES-T-TB-S
T ss_pred ecCchhhhccCCCCceEEEEEechh-hhcc
Confidence 122 233334899999999999999 6643
No 244
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=94.31 E-value=0.21 Score=52.03 Aligned_cols=93 Identities=16% Similarity=0.257 Sum_probs=48.4
Q ss_pred cHHHHHHHHHHHhcccCCC---CCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC--CeEEEE
Q 009069 200 GADAYIDDIGKLINLKDGS---IRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGV--PALIGV 270 (544)
Q Consensus 200 ga~~~i~~L~~lL~l~~g~---~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv--~~~~~v 270 (544)
+...|+.-|.++|...... .-++||||+|...+-..|..+ .++++||++..+..++.......++ .+.+..
T Consensus 81 ~R~nYi~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~ 160 (299)
T PF05971_consen 81 NRLNYIHWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRK 160 (299)
T ss_dssp HHHHHHHHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE
T ss_pred hhHHHHHHHHHHhhccccccccceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEE
Confidence 4556887788887643322 357999999988554444432 6889999887776666555443133 344443
Q ss_pred ecccc-----CCCCCCCeeEEEecccc
Q 009069 271 MASIR-----LPYPSRAFDMAHCSRCL 292 (544)
Q Consensus 271 ~d~~~-----LPfpd~sFDlV~~~~~l 292 (544)
..... +..+++.||+.+|+.-|
T Consensus 161 ~~~~~~i~~~i~~~~e~~dftmCNPPF 187 (299)
T PF05971_consen 161 QKNPDNIFDGIIQPNERFDFTMCNPPF 187 (299)
T ss_dssp --ST-SSTTTSTT--S-EEEEEE----
T ss_pred cCCccccchhhhcccceeeEEecCCcc
Confidence 32111 11234689999999954
No 245
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=94.08 E-value=0.89 Score=45.97 Aligned_cols=141 Identities=16% Similarity=0.092 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHhcccCCCCCEEEEeCCCCc-HHHHHHhh--CCcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCC
Q 009069 201 ADAYIDDIGKLINLKDGSIRTAIDTGCGVA-SWGAYLMS--RNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLP 277 (544)
Q Consensus 201 a~~~i~~L~~lL~l~~g~~r~VLDIGCGtG-~~a~~La~--~~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LP 277 (544)
.+..+.+..-+.....-.+++||=+|=+-- +++..|.. +.|+++||+..-+ ....+.|.+.|.++.....|. +.|
T Consensus 27 ~eT~~~Ra~~~~~~gdL~gk~il~lGDDDLtSlA~al~~~~~~I~VvDiDeRll-~fI~~~a~~~gl~i~~~~~Dl-R~~ 104 (243)
T PF01861_consen 27 PETTLRRAALMAERGDLEGKRILFLGDDDLTSLALALTGLPKRITVVDIDERLL-DFINRVAEEEGLPIEAVHYDL-RDP 104 (243)
T ss_dssp HHHHHHHHHHHHHTT-STT-EEEEES-TT-HHHHHHHHT--SEEEEE-S-HHHH-HHHHHHHHHHT--EEEE---T-TS-
T ss_pred HHHHHHHHHHHHhcCcccCCEEEEEcCCcHHHHHHHhhCCCCeEEEEEcCHHHH-HHHHHHHHHcCCceEEEEecc-ccc
Confidence 455555555455444445779999997665 55555543 4799999987655 344467778888887777765 334
Q ss_pred CC---CCCeeEEEecccccccccCh-HHHHHHHHHcccCCc-EEEEEeCCCCccccccCCCcchhhhHhhhhhHHHHHHh
Q 009069 278 YP---SRAFDMAHCSRCLIPWGQYD-GLYLIEVDRVLRPGG-YWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARS 352 (544)
Q Consensus 278 fp---d~sFDlV~~~~~l~h~~~d~-~~~L~Ei~RVLKPGG-~Lvis~pp~~w~~~~~~w~~t~e~L~~~~~~ie~la~~ 352 (544)
+| -++||++++-. ++..+. ..++......||.-| ..+++-.. .+.....|.+++...-.
T Consensus 105 LP~~~~~~fD~f~TDP---PyT~~G~~LFlsRgi~~Lk~~g~~gy~~~~~-------------~~~s~~~~~~~Q~~l~~ 168 (243)
T PF01861_consen 105 LPEELRGKFDVFFTDP---PYTPEGLKLFLSRGIEALKGEGCAGYFGFTH-------------KEASPDKWLEVQRFLLE 168 (243)
T ss_dssp --TTTSS-BSEEEE------SSHHHHHHHHHHHHHTB-STT-EEEEEE-T-------------TT--HHHHHHHHHHHHT
T ss_pred CCHHHhcCCCEEEeCC---CCCHHHHHHHHHHHHHHhCCCCceEEEEEec-------------CcCcHHHHHHHHHHHHH
Confidence 44 47999999977 455433 678899999998766 43333210 01112234557777777
Q ss_pred hcceeee
Q 009069 353 LCWKKLI 359 (544)
Q Consensus 353 l~w~~v~ 359 (544)
+++-...
T Consensus 169 ~gl~i~d 175 (243)
T PF01861_consen 169 MGLVITD 175 (243)
T ss_dssp S--EEEE
T ss_pred CCcCHHH
Confidence 8775443
No 246
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=94.03 E-value=0.16 Score=52.05 Aligned_cols=101 Identities=15% Similarity=0.083 Sum_probs=52.5
Q ss_pred CCCEEEEeCCCCc--HHHHHHhh-----CCcEEEeCCccchHHHHHHHHHHcCCC--eEEEEeccccCC----------C
Q 009069 218 SIRTAIDTGCGVA--SWGAYLMS-----RNILAVSFAPRDTHEAQVQFALERGVP--ALIGVMASIRLP----------Y 278 (544)
Q Consensus 218 ~~r~VLDIGCGtG--~~a~~La~-----~~V~~vdisp~dls~a~v~~A~ergv~--~~~~v~d~~~LP----------f 278 (544)
.++..||||||-= ...-.+++ ..|..+|.+|.-+.-+..-+ ..... ..++.+|..+.. +
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL--~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~ 145 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALL--ADNPRGRTAYVQADLRDPEAILAHPEVRGL 145 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHH--TT-TTSEEEEEE--TT-HHHHHCSHHHHCC
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhh--cCCCCccEEEEeCCCCCHHHHhcCHHHHhc
Confidence 3668999999954 23333433 26888999775443222212 22233 677777754321 1
Q ss_pred --CCCCeeEEEeccccccccc--ChHHHHHHHHHcccCCcEEEEEeC
Q 009069 279 --PSRAFDMAHCSRCLIPWGQ--YDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 279 --pd~sFDlV~~~~~l~h~~~--d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
.++.. .|+...++|+..+ ++..++..+...|.||.+|+|+..
T Consensus 146 lD~~rPV-avll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~ 191 (267)
T PF04672_consen 146 LDFDRPV-AVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHA 191 (267)
T ss_dssp --TTS---EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEE
T ss_pred CCCCCCe-eeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEec
Confidence 12222 4555677766655 348999999999999999999954
No 247
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=93.99 E-value=0.11 Score=49.62 Aligned_cols=69 Identities=23% Similarity=0.219 Sum_probs=41.2
Q ss_pred EEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEeccccCC--CCCCC-eeEEEecc
Q 009069 221 TAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIRLP--YPSRA-FDMAHCSR 290 (544)
Q Consensus 221 ~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~A~ergv--~~~~~v~d~~~LP--fpd~s-FDlV~~~~ 290 (544)
+|||+.||.|..+..+++. .|+++|+++.-+.-++- .|.--|+ ++.+..+|...+. +..+. ||+|+++.
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~~Viaidid~~~~~~a~h-Na~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSP 77 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFDRVIAIDIDPERLECAKH-NAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSP 77 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT-EEEEEES-HHHHHHHHH-HHHHTT-GGGEEEEES-HHHHGGGB------SEEEE--
T ss_pred EEEEeccCcCHHHHHHHHhCCeEEEEECCHHHHHHHHH-HHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECC
Confidence 7999999999999999997 48888886654433332 2333354 4788888854432 12222 89999865
No 248
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=93.97 E-value=0.34 Score=51.26 Aligned_cols=100 Identities=18% Similarity=0.193 Sum_probs=52.0
Q ss_pred CCEEEEeCCCCcHHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCC-----CeEEEEeccccCCCC-CCCeeEEE
Q 009069 219 IRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGV-----PALIGVMASIRLPYP-SRAFDMAH 287 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~-----~V~~vdisp~dls~a~v~~A~ergv-----~~~~~v~d~~~LPfp-d~sFDlV~ 287 (544)
..+|||+|.|.|.-+.++-.- .+..++.++ .+.+.--.++..-.. +..-+. ..+++++ ...|++|+
T Consensus 114 pqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp-~lrkV~~tl~~nv~t~~td~r~s~vt--~dRl~lp~ad~ytl~i 190 (484)
T COG5459 114 PQSILDVGAGPGTGLWALNDIWPDLKSAVILEASP-ALRKVGDTLAENVSTEKTDWRASDVT--EDRLSLPAADLYTLAI 190 (484)
T ss_pred cchhhccCCCCchhhhhhcccCCCchhhhhhccCH-HHHHHHHHHHhhcccccCCCCCCccc--hhccCCCccceeehhh
Confidence 447999999999765554332 344444433 221111112211111 111112 2344444 34566666
Q ss_pred ecccccccccC-h-HHHHHHHHHcccCCcEEEEEeC
Q 009069 288 CSRCLIPWGQY-D-GLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 288 ~~~~l~h~~~d-~-~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
...-+.|-... + ...++.+..++.|||.|+|..+
T Consensus 191 ~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivEr 226 (484)
T COG5459 191 VLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVER 226 (484)
T ss_pred hhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeC
Confidence 54433222211 1 2478889999999999999975
No 249
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=93.95 E-value=0.066 Score=58.98 Aligned_cols=72 Identities=24% Similarity=0.343 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEecccc
Q 009069 201 ADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIR 275 (544)
Q Consensus 201 a~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~A~ergv-~~~~~v~d~~~ 275 (544)
++.....+.+.+.+..+. .+||+-||||.++..+++. .|.++.+++.++..|.. .|..+|+ ++.|+++.+++
T Consensus 368 aevLys~i~e~~~l~~~k--~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~dA~~-nA~~NgisNa~Fi~gqaE~ 442 (534)
T KOG2187|consen 368 AEVLYSTIGEWAGLPADK--TLLDVCCGTGTIGLALARGVKRVIGVEISPDAVEDAEK-NAQINGISNATFIVGQAED 442 (534)
T ss_pred HHHHHHHHHHHhCCCCCc--EEEEEeecCCceehhhhccccceeeeecChhhcchhhh-cchhcCccceeeeecchhh
Confidence 344445566666666554 8999999999999999987 78888998877754443 4555665 67888774443
No 250
>PRK13699 putative methylase; Provisional
Probab=93.94 E-value=0.18 Score=50.37 Aligned_cols=81 Identities=15% Similarity=0.114 Sum_probs=47.8
Q ss_pred EEeccccC--CCCCCCeeEEEeccccc----c-----cccC-----hHHHHHHHHHcccCCcEEEEEeCCCCccccccCC
Q 009069 269 GVMASIRL--PYPSRAFDMAHCSRCLI----P-----WGQY-----DGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGW 332 (544)
Q Consensus 269 ~v~d~~~L--Pfpd~sFDlV~~~~~l~----h-----~~~d-----~~~~L~Ei~RVLKPGG~Lvis~pp~~w~~~~~~w 332 (544)
..+|.... .++++++|+|++..-.. . +..+ ....+.|+.|+|||||.+++... |
T Consensus 5 ~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~----------~ 74 (227)
T PRK13699 5 ILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYG----------W 74 (227)
T ss_pred EechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEec----------c
Confidence 34454333 46788888888864221 0 0000 14788999999999999987532 1
Q ss_pred CcchhhhHhhhhhHHHHHHhhcceeeeeeccEEEEeccC
Q 009069 333 NRTTEDLKSEQNGIETIARSLCWKKLIQKKDLAIWQKPT 371 (544)
Q Consensus 333 ~~t~e~L~~~~~~ie~la~~l~w~~v~~~~~~aIwqKP~ 371 (544)
.. ...+....+..+|.... ..||.|+-
T Consensus 75 ~~--------~~~~~~al~~~GF~l~~----~IiW~K~~ 101 (227)
T PRK13699 75 NR--------VDRFMAAWKNAGFSVVG----HLVFTKNY 101 (227)
T ss_pred cc--------HHHHHHHHHHCCCEEee----EEEEECCC
Confidence 11 11233445666776433 47899974
No 251
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=93.74 E-value=0.069 Score=51.93 Aligned_cols=91 Identities=18% Similarity=0.117 Sum_probs=62.7
Q ss_pred EEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHHHHHc-----CCCeEEEEeccccCCCCCCCeeEEEeccccc
Q 009069 221 TAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALER-----GVPALIGVMASIRLPYPSRAFDMAHCSRCLI 293 (544)
Q Consensus 221 ~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~A~er-----gv~~~~~v~d~~~LPfpd~sFDlV~~~~~l~ 293 (544)
++.|+|+|+|.++...++. .|.++..+|.-. +.|.++ ..+..++++|+....| ..-|+|+|-..=.
T Consensus 35 ~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~a-----~~a~eN~~v~g~~n~evv~gDA~~y~f--e~ADvvicEmlDT 107 (252)
T COG4076 35 TFADLGAGSGILSVVAAHAAERVIAIEKDPKRA-----RLAEENLHVPGDVNWEVVVGDARDYDF--ENADVVICEMLDT 107 (252)
T ss_pred ceeeccCCcchHHHHHHhhhceEEEEecCcHHH-----HHhhhcCCCCCCcceEEEecccccccc--cccceeHHHHhhH
Confidence 6899999999877666654 788888866422 234443 2457888889888887 4579999954222
Q ss_pred cccc-ChHHHHHHHHHcccCCcEEEE
Q 009069 294 PWGQ-YDGLYLIEVDRVLRPGGYWIL 318 (544)
Q Consensus 294 h~~~-d~~~~L~Ei~RVLKPGG~Lvi 318 (544)
-+.+ .....+..+...||-.+.++=
T Consensus 108 aLi~E~qVpV~n~vleFLr~d~tiiP 133 (252)
T COG4076 108 ALIEEKQVPVINAVLEFLRYDPTIIP 133 (252)
T ss_pred HhhcccccHHHHHHHHHhhcCCcccc
Confidence 2222 225677778888888888764
No 252
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=93.19 E-value=0.043 Score=48.80 Aligned_cols=46 Identities=33% Similarity=0.692 Sum_probs=30.1
Q ss_pred CeeEEEecccc--cc--cccCh-HHHHHHHHHcccCCcEEEEEeCCCCccccc
Q 009069 282 AFDMAHCSRCL--IP--WGQYD-GLYLIEVDRVLRPGGYWILSGPPVNWESHW 329 (544)
Q Consensus 282 sFDlV~~~~~l--~h--~~~d~-~~~L~Ei~RVLKPGG~Lvis~pp~~w~~~~ 329 (544)
.||+|.|..+. +| +.++. ..+|+.+.+.|+|||.|++. |..|....
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilE--pQ~w~sY~ 51 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILE--PQPWKSYK 51 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE-----HHHHH
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEe--CCCcHHHH
Confidence 48999995543 12 22222 57999999999999999998 34565443
No 253
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=92.75 E-value=2.8 Score=41.48 Aligned_cols=96 Identities=17% Similarity=0.164 Sum_probs=65.1
Q ss_pred CCEEEEeCCCCcHHHHHHhhC---C-cEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCC----CCCCCeeEEEecc
Q 009069 219 IRTAIDTGCGVASWGAYLMSR---N-ILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLP----YPSRAFDMAHCSR 290 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~---~-V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LP----fpd~sFDlV~~~~ 290 (544)
+.+||=+|+.+|+...+++.- | +.++.+++... ...+..+.+|. ++.-...|+ +.| +-=+..|+|++--
T Consensus 77 g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~-reLl~~a~~R~-Ni~PIL~DA-~~P~~Y~~~Ve~VDviy~DV 153 (231)
T COG1889 77 GSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPM-RELLDVAEKRP-NIIPILEDA-RKPEKYRHLVEKVDVIYQDV 153 (231)
T ss_pred CCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhH-HHHHHHHHhCC-Cceeeeccc-CCcHHhhhhcccccEEEEec
Confidence 449999999999888887763 4 88999999776 45566777664 222223343 333 1234589998743
Q ss_pred cccccccChHHHHHHHHHcccCCcEEEEEe
Q 009069 291 CLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 291 ~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
+ -+++.+.+...+...||+||+++++.
T Consensus 154 A---Qp~Qa~I~~~Na~~FLk~~G~~~i~i 180 (231)
T COG1889 154 A---QPNQAEILADNAEFFLKKGGYVVIAI 180 (231)
T ss_pred C---CchHHHHHHHHHHHhcccCCeEEEEE
Confidence 2 12222678888999999999888863
No 254
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=92.57 E-value=0.2 Score=49.32 Aligned_cols=97 Identities=19% Similarity=0.232 Sum_probs=50.9
Q ss_pred EEEEeCCCCcHHHHHHhhC----CcEEEeCCcc--chHHHHHHHHHHcC----C-CeEEEEeccccCCCCCCCeeEEEec
Q 009069 221 TAIDTGCGVASWGAYLMSR----NILAVSFAPR--DTHEAQVQFALERG----V-PALIGVMASIRLPYPSRAFDMAHCS 289 (544)
Q Consensus 221 ~VLDIGCGtG~~a~~La~~----~V~~vdisp~--dls~a~v~~A~erg----v-~~~~~v~d~~~LPfpd~sFDlV~~~ 289 (544)
.+.|||||.|.+...|+.. -+.+++|--. |.-++.++..+... . ++.+...+ .+-|-.+-|..--.+
T Consensus 63 efaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~n--amk~lpn~f~kgqLs 140 (249)
T KOG3115|consen 63 EFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTN--AMKFLPNFFEKGQLS 140 (249)
T ss_pred eEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeecc--chhhccchhhhcccc
Confidence 4899999999999999887 3555655221 22233333332111 1 12222111 111222222222222
Q ss_pred ccccccccCh-------------HHHHHHHHHcccCCcEEEEEe
Q 009069 290 RCLIPWGQYD-------------GLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 290 ~~l~h~~~d~-------------~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
-.++.+++ + ..++.+..=+|++||.++...
T Consensus 141 kmff~fpd-pHfk~~khk~rii~~~l~~eyay~l~~gg~~ytit 183 (249)
T KOG3115|consen 141 KMFFLFPD-PHFKARKHKWRIITSTLLSEYAYVLREGGILYTIT 183 (249)
T ss_pred cceeecCC-hhHhhhhccceeechhHHHHHHhhhhcCceEEEEe
Confidence 22212221 2 368899999999999999874
No 255
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=92.56 E-value=0.31 Score=44.78 Aligned_cols=95 Identities=16% Similarity=0.045 Sum_probs=51.4
Q ss_pred CCCEEEEeCCCCcHHHHHHhh-----C---CcEEEeCCccchHHHHHHHHHHcC--C--CeEEEEeccccCCCCCCCeeE
Q 009069 218 SIRTAIDTGCGVASWGAYLMS-----R---NILAVSFAPRDTHEAQVQFALERG--V--PALIGVMASIRLPYPSRAFDM 285 (544)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~-----~---~V~~vdisp~dls~a~v~~A~erg--v--~~~~~v~d~~~LPfpd~sFDl 285 (544)
....|+|+|||.|.++..|+. . .|.++|..+.... ...+.+.+.+ . ...+...+..... .....++
T Consensus 25 ~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 102 (141)
T PF13679_consen 25 RCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVE-SAQKRAQKLGSDLEKRLSFIQGDIADES-SSDPPDI 102 (141)
T ss_pred CCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHH-HHHHHHHHhcchhhccchhhccchhhhc-ccCCCeE
Confidence 455899999999999999988 3 5677777664433 2323333322 1 1222222222211 1445566
Q ss_pred EEecccccccccCh-HHHHHHHHHcccCCcEEEEEeC
Q 009069 286 AHCSRCLIPWGQYD-GLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 286 V~~~~~l~h~~~d~-~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
++. + |--.+. ..+|+-..+ |+-.+++..|
T Consensus 103 ~vg---L-HaCG~Ls~~~l~~~~~---~~~~~l~~vp 132 (141)
T PF13679_consen 103 LVG---L-HACGDLSDRALRLFIR---PNARFLVLVP 132 (141)
T ss_pred EEE---e-ecccchHHHHHHHHHH---cCCCEEEEcC
Confidence 664 3 333333 445555544 6666665544
No 256
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=92.41 E-value=0.64 Score=49.33 Aligned_cols=93 Identities=18% Similarity=0.157 Sum_probs=59.8
Q ss_pred CCEEEEeCCC-CcHHHHHHhh-CCcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEecccccccc
Q 009069 219 IRTAIDTGCG-VASWGAYLMS-RNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWG 296 (544)
Q Consensus 219 ~r~VLDIGCG-tG~~a~~La~-~~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~sFDlV~~~~~l~h~~ 296 (544)
+.+|+=+|+| .|..+..+++ .+..++.+ +.++...++|++-|....+...+.....--.+.||+|+..-.
T Consensus 167 G~~V~I~G~GGlGh~avQ~Aka~ga~Via~---~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~----- 238 (339)
T COG1064 167 GKWVAVVGAGGLGHMAVQYAKAMGAEVIAI---TRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG----- 238 (339)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCeEEEE---eCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-----
Confidence 4488888887 3477777777 35444444 335566778887775544432222222211234999986441
Q ss_pred cChHHHHHHHHHcccCCcEEEEEeCC
Q 009069 297 QYDGLYLIEVDRVLRPGGYWILSGPP 322 (544)
Q Consensus 297 ~d~~~~L~Ei~RVLKPGG~Lvis~pp 322 (544)
...+....+.||+||.+++.+.+
T Consensus 239 ---~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 239 ---PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred ---hhhHHHHHHHHhcCCEEEEECCC
Confidence 46678899999999999999864
No 257
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=92.20 E-value=0.88 Score=44.92 Aligned_cols=117 Identities=14% Similarity=0.036 Sum_probs=71.0
Q ss_pred EEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcC-CCeEEEEeccc-cCCCCCCCeeEEEeccccccc
Q 009069 222 AIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERG-VPALIGVMASI-RLPYPSRAFDMAHCSRCLIPW 295 (544)
Q Consensus 222 VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~erg-v~~~~~v~d~~-~LPfpd~sFDlV~~~~~l~h~ 295 (544)
|.||||--|.+..+|.++ .++++|+.+..+..+....+.... -.+.+..+|.. .++ +.+..|.|+-..+--..
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~-~~e~~d~ivIAGMGG~l 79 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLK-PGEDVDTIVIAGMGGEL 79 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG---GGG---EEEEEEE-HHH
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccC-CCCCCCEEEEecCCHHH
Confidence 689999999999999997 478999999888777766654331 24666666643 333 22336887765532110
Q ss_pred ccChHHHHHHHHHcccCCcEEEEEeCCCCccccccCCCcchhhhHhhhhhHHHHHHhhcceeeeee
Q 009069 296 GQYDGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQK 361 (544)
Q Consensus 296 ~~d~~~~L~Ei~RVLKPGG~Lvis~pp~~w~~~~~~w~~t~e~L~~~~~~ie~la~~l~w~~v~~~ 361 (544)
-..+|.+....++..-.|++.-. + ....++......+|..+.+.
T Consensus 80 ---I~~ILe~~~~~~~~~~~lILqP~--~-----------------~~~~LR~~L~~~gf~I~~E~ 123 (205)
T PF04816_consen 80 ---IIEILEAGPEKLSSAKRLILQPN--T-----------------HAYELRRWLYENGFEIIDED 123 (205)
T ss_dssp ---HHHHHHHTGGGGTT--EEEEEES--S------------------HHHHHHHHHHTTEEEEEEE
T ss_pred ---HHHHHHhhHHHhccCCeEEEeCC--C-----------------ChHHHHHHHHHCCCEEEEeE
Confidence 14666777777777778888732 1 13346677888899877653
No 258
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=91.72 E-value=0.38 Score=43.47 Aligned_cols=35 Identities=17% Similarity=0.334 Sum_probs=26.0
Q ss_pred EEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHH
Q 009069 221 TAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQ 255 (544)
Q Consensus 221 ~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~ 255 (544)
++||+|||.|.++..+++. .+.+++.++......+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~ 39 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILE 39 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHH
Confidence 4899999999999998875 3677777665554333
No 259
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=91.52 E-value=0.08 Score=45.72 Aligned_cols=93 Identities=16% Similarity=0.085 Sum_probs=37.8
Q ss_pred EEeCCCCcHHHHHHhhC-------CcEEEeCCccchHHHHHHHHHHcC--CCeEEEEeccccC--CCCCCCeeEEEeccc
Q 009069 223 IDTGCGVASWGAYLMSR-------NILAVSFAPRDTHEAQVQFALERG--VPALIGVMASIRL--PYPSRAFDMAHCSRC 291 (544)
Q Consensus 223 LDIGCGtG~~a~~La~~-------~V~~vdisp~dls~a~v~~A~erg--v~~~~~v~d~~~L--Pfpd~sFDlV~~~~~ 291 (544)
||||+..|..+..+++. .+.++|..+. .+...+..++.+ ..+.+..++.... .+++++||+|+.-.
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~--~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg- 77 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG--DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG- 77 (106)
T ss_dssp --------------------------EEEESS--------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES-
T ss_pred CccccccccccccccccccccccCCEEEEECCCc--ccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECC-
Confidence 68999999877777653 3677777553 112222222222 2467776664322 12357899999744
Q ss_pred ccccccChHHHHHHHHHcccCCcEEEEE
Q 009069 292 LIPWGQYDGLYLIEVDRVLRPGGYWILS 319 (544)
Q Consensus 292 l~h~~~d~~~~L~Ei~RVLKPGG~Lvis 319 (544)
- |-.+.....+..+.+.|+|||.+++.
T Consensus 78 ~-H~~~~~~~dl~~~~~~l~~ggviv~d 104 (106)
T PF13578_consen 78 D-HSYEAVLRDLENALPRLAPGGVIVFD 104 (106)
T ss_dssp ----HHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred C-CCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 2 22222367888899999999999886
No 260
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=91.32 E-value=1.7 Score=44.88 Aligned_cols=100 Identities=9% Similarity=0.163 Sum_probs=55.2
Q ss_pred CCEEEEeCCCCcHHHHHHhh-C-----CcEEEeCCccchHHHHHHHHH---HcCCCeEEEEeccccCCCCCCCeeEEEec
Q 009069 219 IRTAIDTGCGVASWGAYLMS-R-----NILAVSFAPRDTHEAQVQFAL---ERGVPALIGVMASIRLPYPSRAFDMAHCS 289 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~-~-----~V~~vdisp~dls~a~v~~A~---ergv~~~~~v~d~~~LPfpd~sFDlV~~~ 289 (544)
.++|+=||+|.=-++..+.. + .++.+|+++.....+. +... .-+....+..+|....+..-..||+|+..
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~-~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lA 199 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELAR-RLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLA 199 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHH-HHHH---HH-SSEEEEES-GGGG-GG----SEEEE-
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHH-HHHhhcccccCCeEEEecchhccccccccCCEEEEh
Confidence 45899999998766555543 2 2667888665443332 2222 12345778888877666555689999976
Q ss_pred cccccccc-ChHHHHHHHHHcccCCcEEEEEe
Q 009069 290 RCLIPWGQ-YDGLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 290 ~~l~h~~~-d~~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
... .... +-..+|..+.+.++||..+++-.
T Consensus 200 alV-g~~~e~K~~Il~~l~~~m~~ga~l~~Rs 230 (276)
T PF03059_consen 200 ALV-GMDAEPKEEILEHLAKHMAPGARLVVRS 230 (276)
T ss_dssp TT--S----SHHHHHHHHHHHS-TTSEEEEEE
T ss_pred hhc-ccccchHHHHHHHHHhhCCCCcEEEEec
Confidence 543 3222 23899999999999999999874
No 261
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=90.68 E-value=0.69 Score=46.52 Aligned_cols=95 Identities=13% Similarity=0.235 Sum_probs=56.5
Q ss_pred ccHHHHHHHHHHHhcccCC----CCCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCC--eEE
Q 009069 199 RGADAYIDDIGKLINLKDG----SIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGVP--ALI 268 (544)
Q Consensus 199 ~ga~~~i~~L~~lL~l~~g----~~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv~--~~~ 268 (544)
.|...|+..|.++|....+ ...++||||.|.--+-..+--+ .+++.|+++..++.++.-.....+.. +.+
T Consensus 55 PgRAdYih~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~l 134 (292)
T COG3129 55 PGRADYIHHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRL 134 (292)
T ss_pred CChhHHHHHHHHHHHhcCCCCCcCceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeE
Confidence 4566799999999864433 3457999998876443333222 56788888777766665444332322 222
Q ss_pred EEeccccCCC-----CCCCeeEEEeccccc
Q 009069 269 GVMASIRLPY-----PSRAFDMAHCSRCLI 293 (544)
Q Consensus 269 ~v~d~~~LPf-----pd~sFDlV~~~~~l~ 293 (544)
......+--| ..+.||++.|+.-||
T Consensus 135 r~qk~~~~if~giig~nE~yd~tlCNPPFh 164 (292)
T COG3129 135 RRQKDSDAIFNGIIGKNERYDATLCNPPFH 164 (292)
T ss_pred EeccCccccccccccccceeeeEecCCCcc
Confidence 2221111112 267899999999553
No 262
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=89.84 E-value=1.8 Score=40.34 Aligned_cols=81 Identities=16% Similarity=0.149 Sum_probs=47.5
Q ss_pred cEEEeCCccchHHHHHHHHHHcCC-CeEEEEeccccCC-C-CCCCeeEEEecccccccccCh--------HHHHHHHHHc
Q 009069 241 ILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRLP-Y-PSRAFDMAHCSRCLIPWGQYD--------GLYLIEVDRV 309 (544)
Q Consensus 241 V~~vdisp~dls~a~v~~A~ergv-~~~~~v~d~~~LP-f-pd~sFDlV~~~~~l~h~~~d~--------~~~L~Ei~RV 309 (544)
|.+.||-...+......+...... ++.+...+-+.+. + +.+.+|+|+.+....+-.+.. ..+++.+.++
T Consensus 2 VyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al~l 81 (140)
T PF06962_consen 2 VYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAALEL 81 (140)
T ss_dssp EEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHHHH
T ss_pred EEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHHHh
Confidence 567777665554444433332222 3666655444443 2 335899999988765544322 3789999999
Q ss_pred ccCCcEEEEEeC
Q 009069 310 LRPGGYWILSGP 321 (544)
Q Consensus 310 LKPGG~Lvis~p 321 (544)
|+|||.+++...
T Consensus 82 L~~gG~i~iv~Y 93 (140)
T PF06962_consen 82 LKPGGIITIVVY 93 (140)
T ss_dssp EEEEEEEEEEE-
T ss_pred hccCCEEEEEEe
Confidence 999999999975
No 263
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=89.51 E-value=3.5 Score=39.34 Aligned_cols=120 Identities=21% Similarity=0.238 Sum_probs=71.8
Q ss_pred eCCCCcHHHHHHhhC-----CcEEEeCCccchH-------HHHHHHHHHcCCCeEEEEeccccCC----CCCCCeeEEEe
Q 009069 225 TGCGVASWGAYLMSR-----NILAVSFAPRDTH-------EAQVQFALERGVPALIGVMASIRLP----YPSRAFDMAHC 288 (544)
Q Consensus 225 IGCGtG~~a~~La~~-----~V~~vdisp~dls-------~a~v~~A~ergv~~~~~v~d~~~LP----fpd~sFDlV~~ 288 (544)
||=|.=+|+..|++. +++++.++..+.- ...++..++.|+.+.+.+ |+..+. ...+.||.|+-
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~V-Dat~l~~~~~~~~~~FDrIiF 81 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGV-DATKLHKHFRLKNQRFDRIIF 81 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCC-CCCcccccccccCCcCCEEEE
Confidence 566777889888875 5677776443211 122223345566655543 555554 35688999998
Q ss_pred ccccccccc---Ch---------HHHHHHHHHcccCCcEEEEEeCCCCccccccCCCcchhhhHhhhhhHHHHHHhhcce
Q 009069 289 SRCLIPWGQ---YD---------GLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWK 356 (544)
Q Consensus 289 ~~~l~h~~~---d~---------~~~L~Ei~RVLKPGG~Lvis~pp~~w~~~~~~w~~t~e~L~~~~~~ie~la~~l~w~ 356 (544)
++-...... +. ..+|..+.++|+++|.+.|+..... .+. .|+ |+.+++..++.
T Consensus 82 NFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~---py~-----------~W~-i~~lA~~~gl~ 146 (166)
T PF10354_consen 82 NFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQ---PYD-----------SWN-IEELAAEAGLV 146 (166)
T ss_pred eCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC---CCc-----------ccc-HHHHHHhcCCE
Confidence 774322100 00 3688899999999999999853111 011 122 56788887776
Q ss_pred eeee
Q 009069 357 KLIQ 360 (544)
Q Consensus 357 ~v~~ 360 (544)
.+..
T Consensus 147 l~~~ 150 (166)
T PF10354_consen 147 LVRK 150 (166)
T ss_pred EEEE
Confidence 6543
No 264
>PRK11524 putative methyltransferase; Provisional
Probab=89.32 E-value=0.87 Score=46.88 Aligned_cols=55 Identities=18% Similarity=0.210 Sum_probs=36.1
Q ss_pred EEEEeccccC--CCCCCCeeEEEecccccc----------cc-----cChHHHHHHHHHcccCCcEEEEEeC
Q 009069 267 LIGVMASIRL--PYPSRAFDMAHCSRCLIP----------WG-----QYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 267 ~~~v~d~~~L--Pfpd~sFDlV~~~~~l~h----------~~-----~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
.+..+|.... .+++++||+|++..-+.- +. +....+|.++.|+|||||.|++...
T Consensus 10 ~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~~ 81 (284)
T PRK11524 10 TIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMNS 81 (284)
T ss_pred EEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEcC
Confidence 4455565442 356788999998653210 00 0014688999999999999999743
No 265
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=88.96 E-value=3.4 Score=44.19 Aligned_cols=101 Identities=19% Similarity=0.186 Sum_probs=56.1
Q ss_pred CCEEEEeCCCCcHHHHHHhhC--------CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEeccccCC---------CC
Q 009069 219 IRTAIDTGCGVASWGAYLMSR--------NILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIRLP---------YP 279 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~--------~V~~vdisp~dls~a~v~~A~ergv--~~~~~v~d~~~LP---------fp 279 (544)
+.+|||+.+-.|+=++.|.+. .+.+=|+++.-+. ++.....+-. ...+...++...| ..
T Consensus 156 ~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~--~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~~~~~ 233 (375)
T KOG2198|consen 156 GDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLN--MLVHQLKRLPSPNLLVTNHDASLFPNIYLKDGNDKE 233 (375)
T ss_pred CCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHH--HHHHHHhccCCcceeeecccceeccccccccCchhh
Confidence 449999999999888777764 2344455433222 2222223321 1222222222222 23
Q ss_pred CCCeeEEEe-cccccc-------------c--------ccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 280 SRAFDMAHC-SRCLIP-------------W--------GQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 280 d~sFDlV~~-~~~l~h-------------~--------~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
...||-|.| ..|-.. | +.-+..+|..-.|.||+||.++.|+-
T Consensus 234 ~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTC 297 (375)
T KOG2198|consen 234 QLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTC 297 (375)
T ss_pred hhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEecc
Confidence 456999997 111100 1 11113688899999999999999964
No 266
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=88.62 E-value=0.34 Score=46.09 Aligned_cols=42 Identities=26% Similarity=0.423 Sum_probs=34.6
Q ss_pred CCCeeEEEeccccccccc-------Ch---HHHHHHHHHcccCCcEEEEEeC
Q 009069 280 SRAFDMAHCSRCLIPWGQ-------YD---GLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 280 d~sFDlV~~~~~l~h~~~-------d~---~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
.++||.+.|..+++|..- ++ ...+.++.++|||||.|+++.|
T Consensus 61 ~~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vP 112 (177)
T PF03269_consen 61 AGSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVP 112 (177)
T ss_pred hccchhhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEee
Confidence 467999999888877531 12 5789999999999999999987
No 267
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=88.60 E-value=2.1 Score=46.47 Aligned_cols=106 Identities=17% Similarity=0.235 Sum_probs=63.4
Q ss_pred ccCCCCCEEEEeCCCCcHHHH---HHh-hCC-cEEEeCCccchHHHHHHHHHHcCCC-eEEEEeccccCC---CCCCCee
Q 009069 214 LKDGSIRTAIDTGCGVASWGA---YLM-SRN-ILAVSFAPRDTHEAQVQFALERGVP-ALIGVMASIRLP---YPSRAFD 284 (544)
Q Consensus 214 l~~g~~r~VLDIGCGtG~~a~---~La-~~~-V~~vdisp~dls~a~v~~A~ergv~-~~~~v~d~~~LP---fpd~sFD 284 (544)
+.+..+.+|||+.+-.|.=+- .|+ ..| |.+.|....-+ ....+.+.+.|+. ..+...|...+| |+. +||
T Consensus 237 L~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~-~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~-~fD 314 (460)
T KOG1122|consen 237 LDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRL-KSLKANLHRLGVTNTIVSNYDGREFPEKEFPG-SFD 314 (460)
T ss_pred cCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHH-HHHHHHHHHhCCCceEEEccCcccccccccCc-ccc
Confidence 344556699999999994333 333 345 45556544333 2333444455664 455556665554 444 899
Q ss_pred EEE----ecc--ccc-----cccc----------ChHHHHHHHHHcccCCcEEEEEeC
Q 009069 285 MAH----CSR--CLI-----PWGQ----------YDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 285 lV~----~~~--~l~-----h~~~----------d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
-|. |+. +.. .+.. -+.++|..+...+++||+|+.++-
T Consensus 315 RVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTC 372 (460)
T KOG1122|consen 315 RVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTC 372 (460)
T ss_pred eeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEee
Confidence 998 444 110 0000 014788889999999999999964
No 268
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=88.28 E-value=4.8 Score=44.87 Aligned_cols=119 Identities=18% Similarity=0.228 Sum_probs=71.9
Q ss_pred cHHHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC--------CcEEEeCCccchHHHHHHHHHHcCCC--eEEE
Q 009069 200 GADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--------NILAVSFAPRDTHEAQVQFALERGVP--ALIG 269 (544)
Q Consensus 200 ga~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--------~V~~vdisp~dls~a~v~~A~ergv~--~~~~ 269 (544)
.....++.+.+++...... +|+|-.||+|++.....+. .+.+.++......-+...... +++. +...
T Consensus 170 TP~~v~~liv~~l~~~~~~--~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~l-hgi~~~~~i~ 246 (489)
T COG0286 170 TPREVSELIVELLDPEPRN--SIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLIL-HGIEGDANIR 246 (489)
T ss_pred ChHHHHHHHHHHcCCCCCC--eecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHH-hCCCcccccc
Confidence 3455667777777654434 8999999999765544321 245555544444333333332 3443 4555
Q ss_pred EeccccCCCC-----CCCeeEEEeccccc--ccccC---------------------h-HHHHHHHHHcccCCcEEEEEe
Q 009069 270 VMASIRLPYP-----SRAFDMAHCSRCLI--PWGQY---------------------D-GLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 270 v~d~~~LPfp-----d~sFDlV~~~~~l~--h~~~d---------------------~-~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
.+|...-|.. .+.||.|+++.-+. .|... . ..++..+...|+|||+..++.
T Consensus 247 ~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl 326 (489)
T COG0286 247 HGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVL 326 (489)
T ss_pred ccccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEe
Confidence 5555444432 36799999866442 11110 1 378999999999999887776
Q ss_pred C
Q 009069 321 P 321 (544)
Q Consensus 321 p 321 (544)
|
T Consensus 327 ~ 327 (489)
T COG0286 327 P 327 (489)
T ss_pred c
Confidence 5
No 269
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=87.55 E-value=0.96 Score=44.19 Aligned_cols=91 Identities=20% Similarity=0.209 Sum_probs=50.8
Q ss_pred CCEEEEeCCCCcHHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEe-cccc--------CCCCCCCee
Q 009069 219 IRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGVPALIGVM-ASIR--------LPYPSRAFD 284 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~-----~V~~vdisp~dls~a~v~~A~ergv~~~~~v~-d~~~--------LPfpd~sFD 284 (544)
..+|||+||..|+|+.-..++ -+.++|+-.. .--.|. .+..+ |..+ ...|+...|
T Consensus 70 ~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~---------~p~~Ga--~~i~~~dvtdp~~~~ki~e~lp~r~Vd 138 (232)
T KOG4589|consen 70 EDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI---------EPPEGA--TIIQGNDVTDPETYRKIFEALPNRPVD 138 (232)
T ss_pred CCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec---------cCCCCc--ccccccccCCHHHHHHHHHhCCCCccc
Confidence 348999999999999888776 2566666221 101121 11111 1111 113567899
Q ss_pred EEEeccccccccc---Ch-------HHHHHHHHHcccCCcEEEEEe
Q 009069 285 MAHCSRCLIPWGQ---YD-------GLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 285 lV~~~~~l~h~~~---d~-------~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
+|++-++-..-.. |. ..++.-....++|+|.|+.-.
T Consensus 139 vVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~ 184 (232)
T KOG4589|consen 139 VVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKL 184 (232)
T ss_pred EEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEE
Confidence 9998443211000 01 234444556788999999873
No 270
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=87.41 E-value=1 Score=45.31 Aligned_cols=91 Identities=20% Similarity=0.292 Sum_probs=56.1
Q ss_pred CCEEEEeCCCCcHHHHHHhhC-------------CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCC--------
Q 009069 219 IRTAIDTGCGVASWGAYLMSR-------------NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLP-------- 277 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~-------------~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LP-------- 277 (544)
..+|+|+.+..|+|...|.++ .|+++|+.+... -. .+.-.++|+....
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaP---------I~--GV~qlq~DIT~~stae~Ii~h 110 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAP---------IE--GVIQLQGDITSASTAEAIIEH 110 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCc---------cC--ceEEeecccCCHhHHHHHHHH
Confidence 347999999999999988764 167777744211 01 1333444443321
Q ss_pred CCCCCeeEEEeccc-----ccccccCh-----HHHHHHHHHcccCCcEEEEEe
Q 009069 278 YPSRAFDMAHCSRC-----LIPWGQYD-----GLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 278 fpd~sFDlV~~~~~-----l~h~~~d~-----~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
|....-|+|+|-.+ +|.+.+.. ..+|.-...||||||.|+--.
T Consensus 111 fggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKi 163 (294)
T KOG1099|consen 111 FGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKI 163 (294)
T ss_pred hCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhh
Confidence 44567899998443 32222211 245666788999999998753
No 271
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=87.00 E-value=0.85 Score=40.61 Aligned_cols=28 Identities=21% Similarity=0.248 Sum_probs=24.8
Q ss_pred CCEEEEeCCCCcHHHHHHhhCCcEEEeC
Q 009069 219 IRTAIDTGCGVASWGAYLMSRNILAVSF 246 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~V~~vdi 246 (544)
.....|||||.|.+.--|...|..+.++
T Consensus 59 ~~~FVDlGCGNGLLV~IL~~EGy~G~Gi 86 (112)
T PF07757_consen 59 FQGFVDLGCGNGLLVYILNSEGYPGWGI 86 (112)
T ss_pred CCceEEccCCchHHHHHHHhCCCCcccc
Confidence 3469999999999999999999988888
No 272
>PRK10742 putative methyltransferase; Provisional
Probab=86.47 E-value=3.6 Score=41.92 Aligned_cols=86 Identities=15% Similarity=0.107 Sum_probs=51.1
Q ss_pred HHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhCCcE--EEeCCccchHHHHHHHHHHc-------C----CCeEEEEecc
Q 009069 207 DIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNIL--AVSFAPRDTHEAQVQFALER-------G----VPALIGVMAS 273 (544)
Q Consensus 207 ~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~V~--~vdisp~dls~a~v~~A~er-------g----v~~~~~v~d~ 273 (544)
.|.+.+.++.+...+|||.=+|.|..+..++.+|.. .++-++. ..+.++...++ + -.+.+...|.
T Consensus 77 ~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~G~~V~~vEr~p~--vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da 154 (250)
T PRK10742 77 AVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGCRVRMLERNPV--VAALLDDGLARGYADAEIGGWLQERLQLIHASS 154 (250)
T ss_pred HHHHHhCCCCCCCCEEEECCCCccHHHHHHHHcCCEEEEEECCHH--HHHHHHHHHHHhhhccccchhhhceEEEEeCcH
Confidence 456666666655458999999999999999998654 4444442 22333333332 1 1244445553
Q ss_pred cc-CCCCCCCeeEEEecccccc
Q 009069 274 IR-LPYPSRAFDMAHCSRCLIP 294 (544)
Q Consensus 274 ~~-LPfpd~sFDlV~~~~~l~h 294 (544)
.. |.-...+||+|+.-..+-|
T Consensus 155 ~~~L~~~~~~fDVVYlDPMfp~ 176 (250)
T PRK10742 155 LTALTDITPRPQVVYLDPMFPH 176 (250)
T ss_pred HHHHhhCCCCCcEEEECCCCCC
Confidence 22 2212347999998776533
No 273
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=86.36 E-value=4.6 Score=42.98 Aligned_cols=99 Identities=17% Similarity=0.091 Sum_probs=56.1
Q ss_pred CCEEEEeCCCC-cHHHHHHhhC-Cc-EEEeCCccchHHHHHHHHHHcCCCeEEEEecccc-----C-CC-CCCCeeEEEe
Q 009069 219 IRTAIDTGCGV-ASWGAYLMSR-NI-LAVSFAPRDTHEAQVQFALERGVPALIGVMASIR-----L-PY-PSRAFDMAHC 288 (544)
Q Consensus 219 ~r~VLDIGCGt-G~~a~~La~~-~V-~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~-----L-Pf-pd~sFDlV~~ 288 (544)
+.+||.+|||. |..+..+++. ++ .++-+ +.++...+++++.+ .+.+....... + .+ ..+.+|+|+.
T Consensus 185 g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~---~~~~~~~~~~~~~~-~~~vi~~~~~~~~~~~l~~~~~~~~~D~vld 260 (386)
T cd08283 185 GDTVAVWGCGPVGLFAARSAKLLGAERVIAI---DRVPERLEMARSHL-GAETINFEEVDDVVEALRELTGGRGPDVCID 260 (386)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEE---cCCHHHHHHHHHcC-CcEEEcCCcchHHHHHHHHHcCCCCCCEEEE
Confidence 34899999987 7777777765 43 23333 22245556666652 12222111110 0 11 2346899986
Q ss_pred cccc-------cc-------cccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 289 SRCL-------IP-------WGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 289 ~~~l-------~h-------~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
.-.- ++ -..+....+.++.+.|+|||.+++.+.
T Consensus 261 ~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g~ 307 (386)
T cd08283 261 AVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIGV 307 (386)
T ss_pred CCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEcC
Confidence 4211 00 111235688999999999999999864
No 274
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=86.08 E-value=3.8 Score=41.85 Aligned_cols=92 Identities=14% Similarity=0.219 Sum_probs=54.0
Q ss_pred CEEEEeCCC-CcHHHHHHhhC-CcEEEeCCccchHHHHHHHHHHcCCCeEEEEecccc----CCCCCCCeeEEEeccccc
Q 009069 220 RTAIDTGCG-VASWGAYLMSR-NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIR----LPYPSRAFDMAHCSRCLI 293 (544)
Q Consensus 220 r~VLDIGCG-tG~~a~~La~~-~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~----LPfpd~sFDlV~~~~~l~ 293 (544)
.+||..|+| .|..+..+++. ++.++-++. ++...+.+++.+....+...+... .....+.+|+|+....
T Consensus 167 ~~vli~g~g~vG~~~~~la~~~G~~V~~~~~---s~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~D~vid~~g-- 241 (338)
T cd08254 167 ETVLVIGLGGLGLNAVQIAKAMGAAVIAVDI---KEEKLELAKELGADEVLNSLDDSPKDKKAAGLGGGFDVIFDFVG-- 241 (338)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCEEEEEcC---CHHHHHHHHHhCCCEEEcCCCcCHHHHHHHhcCCCceEEEECCC--
Confidence 478888876 46777777664 655444422 234445555556533222110000 0123567999885331
Q ss_pred ccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 294 PWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 294 h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
....+.++.+.|++||.++..+.
T Consensus 242 -----~~~~~~~~~~~l~~~G~~v~~g~ 264 (338)
T cd08254 242 -----TQPTFEDAQKAVKPGGRIVVVGL 264 (338)
T ss_pred -----CHHHHHHHHHHhhcCCEEEEECC
Confidence 14678899999999999998754
No 275
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=85.06 E-value=11 Score=38.59 Aligned_cols=101 Identities=16% Similarity=0.205 Sum_probs=62.3
Q ss_pred CEEEEeCCCCcHHHHHHhhC--------CcEEEeCCccchHHHHHHHHHHc-CCCeEEEEecc----ccCCCCCCCeeEE
Q 009069 220 RTAIDTGCGVASWGAYLMSR--------NILAVSFAPRDTHEAQVQFALER-GVPALIGVMAS----IRLPYPSRAFDMA 286 (544)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~--------~V~~vdisp~dls~a~v~~A~er-gv~~~~~v~d~----~~LPfpd~sFDlV 286 (544)
.+.+|+|.|+..=++.|.+. .+..+|++..-+.....++..+. ++++.-..+|. ..+| ..+.==++
T Consensus 80 ~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~-~~~~Rl~~ 158 (321)
T COG4301 80 CTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELP-RGGRRLFV 158 (321)
T ss_pred ceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhccc-CCCeEEEE
Confidence 48999999999777776542 46778887765555555554443 33333333332 2233 11222233
Q ss_pred EecccccccccCh-HHHHHHHHHcccCCcEEEEEeC
Q 009069 287 HCSRCLIPWGQYD-GLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 287 ~~~~~l~h~~~d~-~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
+-...+-.+.+++ ..+|..+...|+||-+|++-..
T Consensus 159 flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGvD 194 (321)
T COG4301 159 FLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGVD 194 (321)
T ss_pred EecccccCCChHHHHHHHHHHHhcCCCcceEEEecc
Confidence 3344454555545 6899999999999999999753
No 276
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=84.78 E-value=3.4 Score=42.10 Aligned_cols=128 Identities=21% Similarity=0.218 Sum_probs=66.1
Q ss_pred CCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEecccccc
Q 009069 219 IRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIP 294 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~sFDlV~~~~~l~h 294 (544)
..+|||||||.=-++...... .+++.||+...+. ....+...-+++..+.+.|...-+ +....|+++..-.+ |
T Consensus 106 p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve-~l~~~l~~l~~~~~~~v~Dl~~~~-~~~~~DlaLllK~l-p 182 (251)
T PF07091_consen 106 PDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVE-FLNAFLAVLGVPHDARVRDLLSDP-PKEPADLALLLKTL-P 182 (251)
T ss_dssp -SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHH-HHHHHHHHTT-CEEEEEE-TTTSH-TTSEESEEEEET-H-H
T ss_pred CchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHH-HHHHHHHhhCCCcceeEeeeeccC-CCCCcchhhHHHHH-H
Confidence 558999999999998877665 4677777554332 111222344677777777765554 45678999987766 4
Q ss_pred cccCh-HHHHHHHHHcccCCcEEEEEeCCCCccccccCCCcchhhhHhhhhhHHHHHHhhcce
Q 009069 295 WGQYD-GLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWK 356 (544)
Q Consensus 295 ~~~d~-~~~L~Ei~RVLKPGG~Lvis~pp~~w~~~~~~w~~t~e~L~~~~~~ie~la~~l~w~ 356 (544)
..+.. ...-.++...++ .=.+++|.|-.....+.++ ........++..+..-+|.
T Consensus 183 ~le~q~~g~g~~ll~~~~-~~~~vVSfPtrSL~gR~~g------m~~~y~~~fe~~~~~~~~~ 238 (251)
T PF07091_consen 183 CLERQRRGAGLELLDALR-SPHVVVSFPTRSLGGRNKG------MEQTYSAWFEALAAERGWI 238 (251)
T ss_dssp HHHHHSTTHHHHHHHHSC-ESEEEEEEES-------TT------HHHCHHHHHHHHCCTTCEE
T ss_pred HHHHHhcchHHHHHHHhC-CCeEEEeccccccccCccc------cccCHHHHHHHhcccCCce
Confidence 44323 222233333332 2355566553222222222 1112234566777777776
No 277
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=83.51 E-value=3.6 Score=45.91 Aligned_cols=100 Identities=18% Similarity=0.116 Sum_probs=64.8
Q ss_pred CCEEEEeCCCCcHHHHHHhh------C--CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEecc
Q 009069 219 IRTAIDTGCGVASWGAYLMS------R--NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSR 290 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~------~--~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~sFDlV~~~~ 290 (544)
.-.|+=+|.|-|-+.....+ + .+.+++=.|+.+.--+...-..-.-.+.++..|....+-|....|++++-.
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VSEL 447 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVTIISSDMRKWNAPREQADIIVSEL 447 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCeeEEEeccccccCCchhhccchHHHh
Confidence 34678899999976655433 2 355666666544322111111112357777778888885568899998743
Q ss_pred cccccccCh--HHHHHHHHHcccCCcEEEEE
Q 009069 291 CLIPWGQYD--GLYLIEVDRVLRPGGYWILS 319 (544)
Q Consensus 291 ~l~h~~~d~--~~~L~Ei~RVLKPGG~Lvis 319 (544)
|--+.++. .+.|..+-+.|||.|..|=.
T Consensus 448 -LGSFGDNELSPECLDG~q~fLkpdgIsIP~ 477 (649)
T KOG0822|consen 448 -LGSFGDNELSPECLDGAQKFLKPDGISIPS 477 (649)
T ss_pred -hccccCccCCHHHHHHHHhhcCCCceEccc
Confidence 43555544 68999999999999877654
No 278
>KOG2730 consensus Methylase [General function prediction only]
Probab=82.44 E-value=2.9 Score=41.89 Aligned_cols=87 Identities=22% Similarity=0.364 Sum_probs=52.6
Q ss_pred EEEEeCCCCcHHHHHHhhCC--cEEEeCCccchHHHHHHHHHHc----CCC--eEEEEecccc----CCCCCCCeeEEEe
Q 009069 221 TAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQFALER----GVP--ALIGVMASIR----LPYPSRAFDMAHC 288 (544)
Q Consensus 221 ~VLDIGCGtG~~a~~La~~~--V~~vdisp~dls~a~v~~A~er----gv~--~~~~v~d~~~----LPfpd~sFDlV~~ 288 (544)
.|+|.-||.|..+...+.++ |.++|++| ..+..|+.+ |++ +.|.++|... +.+....+|+|+.
T Consensus 97 ~iidaf~g~gGntiqfa~~~~~VisIdiDP-----ikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~ 171 (263)
T KOG2730|consen 97 VIVDAFCGVGGNTIQFALQGPYVIAIDIDP-----VKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFL 171 (263)
T ss_pred hhhhhhhcCCchHHHHHHhCCeEEEEeccH-----HHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeec
Confidence 69999999998888888775 45566654 344444433 443 7788887544 3444445677776
Q ss_pred cccccccccC--hHHHHHHHHHcccCCcE
Q 009069 289 SRCLIPWGQY--DGLYLIEVDRVLRPGGY 315 (544)
Q Consensus 289 ~~~l~h~~~d--~~~~L~Ei~RVLKPGG~ 315 (544)
+. +|... ...-+..+...++|.|.
T Consensus 172 sp---pwggp~y~~~~~~DL~~~~~p~~~ 197 (263)
T KOG2730|consen 172 SP---PWGGPSYLRADVYDLETHLKPMGT 197 (263)
T ss_pred CC---CCCCcchhhhhhhhhhhhcchhHH
Confidence 55 44431 13444455555555543
No 279
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=81.35 E-value=5.9 Score=41.45 Aligned_cols=94 Identities=20% Similarity=0.180 Sum_probs=55.1
Q ss_pred CCEEEEeCCC-CcHHHHHHhhC-CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccC--CCCCCCeeEEEecccccc
Q 009069 219 IRTAIDTGCG-VASWGAYLMSR-NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRL--PYPSRAFDMAHCSRCLIP 294 (544)
Q Consensus 219 ~r~VLDIGCG-tG~~a~~La~~-~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~L--Pfpd~sFDlV~~~~~l~h 294 (544)
+.+||=+|+| .|.++..+++. ++.++.++..+.++...+++++.|... ........ ....+.||+|+-.-.
T Consensus 173 g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~--v~~~~~~~~~~~~~~~~d~vid~~g--- 247 (355)
T cd08230 173 PRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATY--VNSSKTPVAEVKLVGEFDLIIEATG--- 247 (355)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE--ecCCccchhhhhhcCCCCEEEECcC---
Confidence 3478988987 35666666654 554444433233455666777766432 11111110 001245898885331
Q ss_pred cccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 295 WGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 295 ~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
....+.+..++|++||.+++.+.
T Consensus 248 ----~~~~~~~~~~~l~~~G~~v~~G~ 270 (355)
T cd08230 248 ----VPPLAFEALPALAPNGVVILFGV 270 (355)
T ss_pred ----CHHHHHHHHHHccCCcEEEEEec
Confidence 13578889999999999998764
No 280
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=80.89 E-value=7.2 Score=40.66 Aligned_cols=91 Identities=13% Similarity=0.104 Sum_probs=52.7
Q ss_pred CCEEEEeCCC-CcHHHHHHhhC-Cc---EEEeCCccchHHHHHHHHHHcCCCeEEEEe--ccccCCCCCCCeeEEEeccc
Q 009069 219 IRTAIDTGCG-VASWGAYLMSR-NI---LAVSFAPRDTHEAQVQFALERGVPALIGVM--ASIRLPYPSRAFDMAHCSRC 291 (544)
Q Consensus 219 ~r~VLDIGCG-tG~~a~~La~~-~V---~~vdisp~dls~a~v~~A~ergv~~~~~v~--d~~~LPfpd~sFDlV~~~~~ 291 (544)
+.+||=+|+| .|..+..+++. +. .+++. ++...+++++.|....+... +...+....+.||+|+-.-.
T Consensus 170 g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~-----~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G 244 (343)
T PRK09880 170 GKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADV-----SPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSG 244 (343)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeC-----CHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECCC
Confidence 4488888876 34555555553 43 34444 34556677776654332111 11111111235898885331
Q ss_pred ccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 292 LIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 292 l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
....+..+.+.||+||.+++.+.
T Consensus 245 -------~~~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 245 -------HPSSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred -------CHHHHHHHHHHhhcCCEEEEEcc
Confidence 13567888999999999999864
No 281
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=80.16 E-value=3.4 Score=44.19 Aligned_cols=67 Identities=10% Similarity=0.167 Sum_probs=42.6
Q ss_pred eeecCCceecCCCCCCCcccHHHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC------------CcEEEeCCc
Q 009069 181 VRFQGDRFSFPGGGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR------------NILAVSFAP 248 (544)
Q Consensus 181 ~~~~ge~~~F~g~g~~F~~ga~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~------------~V~~vdisp 248 (544)
+...||.+.-|.-+.+|++-...++-++-+.+ ..+....+++||.|.|.++..+++. .+..+++++
T Consensus 42 ~G~~GDFiTApels~lFGella~~~~~~wq~~--g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~ 119 (370)
T COG1565 42 IGRKGDFITAPELSQLFGELLAEQFLQLWQEL--GRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSP 119 (370)
T ss_pred ccccCCeeechhHHHHHHHHHHHHHHHHHHHh--cCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCH
Confidence 34566777777667777655555443333333 2223447999999999988877653 456677776
Q ss_pred c
Q 009069 249 R 249 (544)
Q Consensus 249 ~ 249 (544)
.
T Consensus 120 ~ 120 (370)
T COG1565 120 E 120 (370)
T ss_pred H
Confidence 3
No 282
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=79.74 E-value=4.3 Score=44.68 Aligned_cols=103 Identities=19% Similarity=0.238 Sum_probs=59.7
Q ss_pred CCEEEEeCCCCc--HHHHHHhhC----CcEEEeCCccchHHHHHHHHH--HcCCCeEE-EEeccccCCCCCC-CeeEEEe
Q 009069 219 IRTAIDTGCGVA--SWGAYLMSR----NILAVSFAPRDTHEAQVQFAL--ERGVPALI-GVMASIRLPYPSR-AFDMAHC 288 (544)
Q Consensus 219 ~r~VLDIGCGtG--~~a~~La~~----~V~~vdisp~dls~a~v~~A~--ergv~~~~-~v~d~~~LPfpd~-sFDlV~~ 288 (544)
...++|+|.|.| .+++.+.-+ .+..||-+-.+......+.-. +.|-+..- .+.--..+|.... .||+|+|
T Consensus 201 pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDlvi~ 280 (491)
T KOG2539|consen 201 PDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDLVIC 280 (491)
T ss_pred hHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceeeEEe
Confidence 447889988876 455554433 466666655444322222211 11211111 1223456775544 4999999
Q ss_pred cccccccccCh--HHHHHHH-HHcccCCcEEEEEeC
Q 009069 289 SRCLIPWGQYD--GLYLIEV-DRVLRPGGYWILSGP 321 (544)
Q Consensus 289 ~~~l~h~~~d~--~~~L~Ei-~RVLKPGG~Lvis~p 321 (544)
++.++++.... ....++. .+..++||++++..+
T Consensus 281 ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~ 316 (491)
T KOG2539|consen 281 AHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEK 316 (491)
T ss_pred eeeeeccCCchhhhhhhHHHHHhccCCCceEEEEec
Confidence 99998877633 3344444 446899999999865
No 283
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=79.65 E-value=3.1 Score=43.42 Aligned_cols=102 Identities=18% Similarity=0.151 Sum_probs=62.2
Q ss_pred CCCCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHH-----HcCCCeEEEEecccc-C-CCCCCCeeE
Q 009069 217 GSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFAL-----ERGVPALIGVMASIR-L-PYPSRAFDM 285 (544)
Q Consensus 217 g~~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~-----ergv~~~~~v~d~~~-L-Pfpd~sFDl 285 (544)
...++||=||-|-|.+.+...++ ++..++++. ++.+...++.. -.+..+.+..+|.-. + -...+.||+
T Consensus 120 ~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~-~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dV 198 (337)
T KOG1562|consen 120 PNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDE-NVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDV 198 (337)
T ss_pred CCCCeEEEEecCCccceeeeeccccccceeeehhhH-HHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceE
Confidence 34568999999999998887765 455566633 12122222211 113446666665322 1 234789999
Q ss_pred EEecccccccccCh----HHHHHHHHHcccCCcEEEEEe
Q 009069 286 AHCSRCLIPWGQYD----GLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 286 V~~~~~l~h~~~d~----~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
|+.-.. .+..+.. ..++..+.+.||+||++++.+
T Consensus 199 ii~dss-dpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ 236 (337)
T KOG1562|consen 199 IITDSS-DPVGPACALFQKPYFGLVLDALKGDGVVCTQG 236 (337)
T ss_pred EEEecC-CccchHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence 996321 1222111 467888999999999999986
No 284
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=79.08 E-value=12 Score=40.24 Aligned_cols=99 Identities=21% Similarity=0.150 Sum_probs=62.7
Q ss_pred EEEEeCCCCc----HHHHHHhhC-------CcEEEeC----CccchH---HHHHHHHHHcCCCeEEEEec---cc-----
Q 009069 221 TAIDTGCGVA----SWGAYLMSR-------NILAVSF----APRDTH---EAQVQFALERGVPALIGVMA---SI----- 274 (544)
Q Consensus 221 ~VLDIGCGtG----~~a~~La~~-------~V~~vdi----sp~dls---~a~v~~A~ergv~~~~~v~d---~~----- 274 (544)
.|+|+|.|.| ++...|+.+ .+++++. ....+. ....++|..-|++..|...- .+
T Consensus 113 HIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fef~~v~~~~~e~l~~~ 192 (374)
T PF03514_consen 113 HIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFEFHPVVVESLEDLDPS 192 (374)
T ss_pred EEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEEEEecccCchhhCCHH
Confidence 6999999999 566667665 3566655 222222 23345677778888877631 11
Q ss_pred cCCCCCCCeeEEEecccccccccC------hHHHHHHHHHcccCCcEEEEE
Q 009069 275 RLPYPSRAFDMAHCSRCLIPWGQY------DGLYLIEVDRVLRPGGYWILS 319 (544)
Q Consensus 275 ~LPfpd~sFDlV~~~~~l~h~~~d------~~~~L~Ei~RVLKPGG~Lvis 319 (544)
.+...++..=+|.|...+||..++ +...+....|-|+|.-..+..
T Consensus 193 ~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L~P~vvv~~E 243 (374)
T PF03514_consen 193 MLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSLNPKVVVLVE 243 (374)
T ss_pred HhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHHhcCCCEEEEEe
Confidence 223344556677788888888743 345567778889999555554
No 285
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=78.54 E-value=11 Score=38.31 Aligned_cols=100 Identities=14% Similarity=0.153 Sum_probs=55.3
Q ss_pred CCEEEEeCCCCcHHHHHHhhC---CcEEEeCCccchHHHHHHH------HH-HcCCCeEEEEecc---ccCCCCCCC-ee
Q 009069 219 IRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQF------AL-ERGVPALIGVMAS---IRLPYPSRA-FD 284 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~---~V~~vdisp~dls~a~v~~------A~-ergv~~~~~v~d~---~~LPfpd~s-FD 284 (544)
..+||++|.|+|..+...+.. .+...|+... -...... +. ..|..+.+..++- ....+-... ||
T Consensus 87 ~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~--~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~D 164 (248)
T KOG2793|consen 87 YINVLELGSGTGLVGILAALLLGAEVVLTDLPKV--VENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFD 164 (248)
T ss_pred ceeEEEecCCccHHHHHHHHHhcceeccCCchhh--HHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCccc
Confidence 447999999999655555442 4555555221 1111111 11 1122333332221 111111122 99
Q ss_pred EEEecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 285 MAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 285 lV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
+|+++.++.+-. ..+.++.-+...|-.+|..++..+
T Consensus 165 lilasDvvy~~~-~~e~Lv~tla~ll~~~~~i~l~~~ 200 (248)
T KOG2793|consen 165 LILASDVVYEEE-SFEGLVKTLAFLLAKDGTIFLAYP 200 (248)
T ss_pred EEEEeeeeecCC-cchhHHHHHHHHHhcCCeEEEEEe
Confidence 999999884433 357888889999999996666654
No 286
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=77.99 E-value=13 Score=41.91 Aligned_cols=95 Identities=13% Similarity=0.110 Sum_probs=56.0
Q ss_pred CCEEEEeCCCCc-HHHHHHhhC-C--cEEEeCCccchHHHHHHHHHHcCCCeEEEEecccc-----------CC------
Q 009069 219 IRTAIDTGCGVA-SWGAYLMSR-N--ILAVSFAPRDTHEAQVQFALERGVPALIGVMASIR-----------LP------ 277 (544)
Q Consensus 219 ~r~VLDIGCGtG-~~a~~La~~-~--V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~-----------LP------ 277 (544)
+.+||=+|+|.- ..+...++. | |.++|. .....+.+++-|.. +...+... +.
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~-----~~~rle~aeslGA~--~v~i~~~e~~~~~~gya~~~s~~~~~~ 237 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDT-----RPEVAEQVESMGAE--FLELDFEEEGGSGDGYAKVMSEEFIKA 237 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEeC-----CHHHHHHHHHcCCe--EEEeccccccccccchhhhcchhHHHH
Confidence 569999999965 445444443 4 445555 44556666665543 22111110 00
Q ss_pred ----CCC--CCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 278 ----YPS--RAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 278 ----fpd--~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
+.+ +.+|+|+..-.. +-...+..+.+++.+.+||||.++..+-
T Consensus 238 ~~~~~~~~~~gaDVVIetag~-pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 238 EMALFAEQAKEVDIIITTALI-PGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HHHHHHhccCCCCEEEECCCC-CcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 011 469999976532 2222233446999999999999998764
No 287
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=77.84 E-value=17 Score=37.81 Aligned_cols=88 Identities=19% Similarity=0.109 Sum_probs=51.3
Q ss_pred CCEEEEeCCC-CcHHHHHHhhC-CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEecccccccc
Q 009069 219 IRTAIDTGCG-VASWGAYLMSR-NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWG 296 (544)
Q Consensus 219 ~r~VLDIGCG-tG~~a~~La~~-~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~sFDlV~~~~~l~h~~ 296 (544)
+.+||=.|+| .|.++..+++. ++.++-+ +.++...+++++.|....+. .... ..+.+|+++-....
T Consensus 166 g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~---~~~~~~~~~a~~~Ga~~vi~---~~~~--~~~~~d~~i~~~~~---- 233 (329)
T TIGR02822 166 GGRLGLYGFGGSAHLTAQVALAQGATVHVM---TRGAAARRLALALGAASAGG---AYDT--PPEPLDAAILFAPA---- 233 (329)
T ss_pred CCEEEEEcCCHHHHHHHHHHHHCCCeEEEE---eCChHHHHHHHHhCCceecc---cccc--CcccceEEEECCCc----
Confidence 4489999975 34455555553 5544333 22234566777777543322 1111 12357876532211
Q ss_pred cChHHHHHHHHHcccCCcEEEEEeC
Q 009069 297 QYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 297 ~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
...+.+..+.|++||.+++.+.
T Consensus 234 ---~~~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 234 ---GGLVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred ---HHHHHHHHHhhCCCcEEEEEec
Confidence 3478889999999999999864
No 288
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=76.92 E-value=42 Score=33.74 Aligned_cols=130 Identities=12% Similarity=0.016 Sum_probs=78.8
Q ss_pred HHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCC-eEEEEeccccCCC
Q 009069 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGVP-ALIGVMASIRLPY 278 (544)
Q Consensus 204 ~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv~-~~~~v~d~~~LPf 278 (544)
.+..+++++... . .+.||||--|.+..+|.+. .+++.|+.+..+..+..++...+..+ +....+|. ..++
T Consensus 6 RL~~va~~V~~~--~--~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dg-l~~l 80 (226)
T COG2384 6 RLTTVANLVKQG--A--RIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDG-LAVL 80 (226)
T ss_pred HHHHHHHHHHcC--C--ceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCC-cccc
Confidence 344556665322 2 4999999999999999986 46788998888876666665544332 33444444 2233
Q ss_pred C-CCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeCCCCccccccCCCcchhhhHhhhhhHHHHHHhhccee
Q 009069 279 P-SRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKK 357 (544)
Q Consensus 279 p-d~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~pp~~w~~~~~~w~~t~e~L~~~~~~ie~la~~l~w~~ 357 (544)
. +..+|+|+-...--.. -..+|.+-...|+-==+|++.-. . .. ..+++......|..
T Consensus 81 ~~~d~~d~ivIAGMGG~l---I~~ILee~~~~l~~~~rlILQPn--~----------~~-------~~LR~~L~~~~~~I 138 (226)
T COG2384 81 ELEDEIDVIVIAGMGGTL---IREILEEGKEKLKGVERLILQPN--I----------HT-------YELREWLSANSYEI 138 (226)
T ss_pred CccCCcCEEEEeCCcHHH---HHHHHHHhhhhhcCcceEEECCC--C----------CH-------HHHHHHHHhCCcee
Confidence 3 4478998865532010 14666666666664445666521 1 11 23556677778877
Q ss_pred eee
Q 009069 358 LIQ 360 (544)
Q Consensus 358 v~~ 360 (544)
..+
T Consensus 139 ~~E 141 (226)
T COG2384 139 KAE 141 (226)
T ss_pred eee
Confidence 664
No 289
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=75.93 E-value=7.7 Score=38.46 Aligned_cols=98 Identities=12% Similarity=0.027 Sum_probs=49.1
Q ss_pred CEEEEeCCCCcHHHHHHhh--------CCcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCC--------CCCCCe
Q 009069 220 RTAIDTGCGVASWGAYLMS--------RNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLP--------YPSRAF 283 (544)
Q Consensus 220 r~VLDIGCGtG~~a~~La~--------~~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LP--------fpd~sF 283 (544)
.+|+++|.-.|..+..++. ..|.++|+.........++. ..-...+.+.++|..... .....-
T Consensus 34 d~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~-hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~~ 112 (206)
T PF04989_consen 34 DLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIES-HPMSPRITFIQGDSIDPEIVDQVRELASPPHP 112 (206)
T ss_dssp SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG-----TTEEEEES-SSSTHHHHTSGSS----SS
T ss_pred CeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhh-ccccCceEEEECCCCCHHHHHHHHHhhccCCc
Confidence 3899999999866655543 26889999443332222211 001235788888754321 112234
Q ss_pred eEEEecccccccccChHHHHHHHHHcccCCcEEEEEe
Q 009069 284 DMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 284 DlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
.+|+- . .+|-.++....|+....+|++|+|+|+.+
T Consensus 113 vlVil-D-s~H~~~hvl~eL~~y~plv~~G~Y~IVeD 147 (206)
T PF04989_consen 113 VLVIL-D-SSHTHEHVLAELEAYAPLVSPGSYLIVED 147 (206)
T ss_dssp EEEEE-S-S----SSHHHHHHHHHHT--TT-EEEETS
T ss_pred eEEEE-C-CCccHHHHHHHHHHhCccCCCCCEEEEEe
Confidence 45553 2 23555556777888999999999999964
No 290
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=74.97 E-value=4.7 Score=35.44 Aligned_cols=85 Identities=24% Similarity=0.254 Sum_probs=52.5
Q ss_pred CCcHHHHHHhhC-CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccc---c--CCCCCCCeeEEEecccccccccChHH
Q 009069 228 GVASWGAYLMSR-NILAVSFAPRDTHEAQVQFALERGVPALIGVMASI---R--LPYPSRAFDMAHCSRCLIPWGQYDGL 301 (544)
Q Consensus 228 GtG~~a~~La~~-~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~---~--LPfpd~sFDlV~~~~~l~h~~~d~~~ 301 (544)
|.|.++..+++. |..++-+ +.++...+++++.|....+...+.. . -....+.+|+|+-.-. ...
T Consensus 1 ~vG~~a~q~ak~~G~~vi~~---~~~~~k~~~~~~~Ga~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g-------~~~ 70 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGAKVIAT---DRSEEKLELAKELGADHVIDYSDDDFVEQIRELTGGRGVDVVIDCVG-------SGD 70 (130)
T ss_dssp HHHHHHHHHHHHTTSEEEEE---ESSHHHHHHHHHTTESEEEETTTSSHHHHHHHHTTTSSEEEEEESSS-------SHH
T ss_pred ChHHHHHHHHHHcCCEEEEE---ECCHHHHHHHHhhcccccccccccccccccccccccccceEEEEecC-------cHH
Confidence 457777777764 5444444 2345566778777743333211110 0 0123457999985331 257
Q ss_pred HHHHHHHcccCCcEEEEEeCC
Q 009069 302 YLIEVDRVLRPGGYWILSGPP 322 (544)
Q Consensus 302 ~L~Ei~RVLKPGG~Lvis~pp 322 (544)
.+.+...+|++||.+++.+..
T Consensus 71 ~~~~~~~~l~~~G~~v~vg~~ 91 (130)
T PF00107_consen 71 TLQEAIKLLRPGGRIVVVGVY 91 (130)
T ss_dssp HHHHHHHHEEEEEEEEEESST
T ss_pred HHHHHHHHhccCCEEEEEEcc
Confidence 899999999999999999753
No 291
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=73.32 E-value=26 Score=35.99 Aligned_cols=92 Identities=14% Similarity=0.093 Sum_probs=53.7
Q ss_pred CCEEEEeCC--CCcHHHHHHhhC-CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccC-----CCCCCCeeEEEecc
Q 009069 219 IRTAIDTGC--GVASWGAYLMSR-NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRL-----PYPSRAFDMAHCSR 290 (544)
Q Consensus 219 ~r~VLDIGC--GtG~~a~~La~~-~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~L-----Pfpd~sFDlV~~~~ 290 (544)
+.+||=.|. |.|..+..+++. |+.++.++. +....+++++.|....+...+.... ....+.+|+|+-..
T Consensus 139 g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~---s~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~gvdvv~d~~ 215 (325)
T TIGR02825 139 GETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAG---SDEKVAYLKKLGFDVAFNYKTVKSLEETLKKASPDGYDCYFDNV 215 (325)
T ss_pred CCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCCEEEeccccccHHHHHHHhCCCCeEEEEECC
Confidence 348888884 467777777765 655544422 2345566666665332221110000 01234689998532
Q ss_pred cccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 291 CLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 291 ~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
....+.+..+.|++||.++..+.
T Consensus 216 --------G~~~~~~~~~~l~~~G~iv~~G~ 238 (325)
T TIGR02825 216 --------GGEFSNTVIGQMKKFGRIAICGA 238 (325)
T ss_pred --------CHHHHHHHHHHhCcCcEEEEecc
Confidence 12456889999999999998753
No 292
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=73.24 E-value=12 Score=38.06 Aligned_cols=99 Identities=17% Similarity=0.225 Sum_probs=63.0
Q ss_pred ccCCCCCEEEEeCCCCcHHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCC----CCCee
Q 009069 214 LKDGSIRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYP----SRAFD 284 (544)
Q Consensus 214 l~~g~~r~VLDIGCGtG~~a~~La~~-----~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfp----d~sFD 284 (544)
++++. +||=+|+++|+...+..+- -|.+++++...- ...+..|.+|- ++.-++-|+ +.|.. -.-.|
T Consensus 154 ikpGs--KVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsG-RdL~nmAkkRt-NiiPIiEDA-rhP~KYRmlVgmVD 228 (317)
T KOG1596|consen 154 IKPGS--KVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSG-RDLINMAKKRT-NIIPIIEDA-RHPAKYRMLVGMVD 228 (317)
T ss_pred ecCCc--eEEEeeccCCceeehhhcccCCCceEEEEEecccch-HHHHHHhhccC-CceeeeccC-CCchheeeeeeeEE
Confidence 44544 8999999999877776654 367888877544 45556676653 333233333 34422 23567
Q ss_pred EEEecccccccccChHHHHHHHHHcccCCcEEEEEe
Q 009069 285 MAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 285 lV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
+|++-- .-++....+...+.-.||+||.|+++.
T Consensus 229 vIFaDv---aqpdq~RivaLNA~~FLk~gGhfvisi 261 (317)
T KOG1596|consen 229 VIFADV---AQPDQARIVALNAQYFLKNGGHFVISI 261 (317)
T ss_pred EEeccC---CCchhhhhhhhhhhhhhccCCeEEEEE
Confidence 777633 222222567778888999999999985
No 293
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=70.60 E-value=10 Score=43.75 Aligned_cols=36 Identities=17% Similarity=0.141 Sum_probs=26.6
Q ss_pred CCeeEEEecccccccccCh----HHHHHHHHHcccCCcEEEE
Q 009069 281 RAFDMAHCSRCLIPWGQYD----GLYLIEVDRVLRPGGYWIL 318 (544)
Q Consensus 281 ~sFDlV~~~~~l~h~~~d~----~~~L~Ei~RVLKPGG~Lvi 318 (544)
..||+++.-. |.+-.. + ..+|.++.|+++|||.|+-
T Consensus 165 ~~~d~~~lD~-FsP~~n-p~~W~~~~~~~l~~~~~~~~~~~t 204 (662)
T PRK01747 165 ARADAWFLDG-FAPAKN-PDMWSPNLFNALARLARPGATLAT 204 (662)
T ss_pred ccccEEEeCC-CCCccC-hhhccHHHHHHHHHHhCCCCEEEE
Confidence 5699999733 323221 2 6899999999999999984
No 294
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=70.43 E-value=9.2 Score=38.63 Aligned_cols=86 Identities=17% Similarity=0.204 Sum_probs=42.8
Q ss_pred HHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhCC--cEEEeCCccchHHHHHHHHH----Hc-CC------CeEEEEecc
Q 009069 207 DIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQFAL----ER-GV------PALIGVMAS 273 (544)
Q Consensus 207 ~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~--V~~vdisp~dls~a~v~~A~----er-gv------~~~~~v~d~ 273 (544)
.|.+.+.++.+...+|||.=+|-|.-+.-|+..| |++++-+|. -.+.++-+. .. .. .+.+..+|.
T Consensus 64 ~l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~G~~V~~lErspv--ia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~ 141 (234)
T PF04445_consen 64 PLAKAVGLKPGMRPSVLDATAGLGRDAFVLASLGCKVTGLERSPV--IAALLKDGLKRAQQDPELLAEAMRRIQLIHGDA 141 (234)
T ss_dssp HHHHHTT-BTTB---EEETT-TTSHHHHHHHHHT--EEEEE--HH--HHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-C
T ss_pred HHHHHhCCCCCCCCEEEECCCcchHHHHHHHccCCeEEEEECCHH--HHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCH
Confidence 3555666666655589999999998887777655 555555442 122222222 11 11 356666664
Q ss_pred c-cCCCCCCCeeEEEecccccc
Q 009069 274 I-RLPYPSRAFDMAHCSRCLIP 294 (544)
Q Consensus 274 ~-~LPfpd~sFDlV~~~~~l~h 294 (544)
. -|..++++||+|+.-..|-+
T Consensus 142 ~~~L~~~~~s~DVVY~DPMFp~ 163 (234)
T PF04445_consen 142 LEYLRQPDNSFDVVYFDPMFPE 163 (234)
T ss_dssp CCHCCCHSS--SEEEE--S---
T ss_pred HHHHhhcCCCCCEEEECCCCCC
Confidence 3 35566889999999776643
No 295
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=70.21 E-value=13 Score=38.96 Aligned_cols=84 Identities=11% Similarity=0.116 Sum_probs=50.6
Q ss_pred HHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCC--
Q 009069 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLP-- 277 (544)
Q Consensus 204 ~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LP-- 277 (544)
.++++.+.+...++. .++|.=+|.|..+..++++ .++++|.++..+..+...+. ..+-.+.+..++...+.
T Consensus 8 ll~Evl~~L~~~~gg--iyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~-~~~~R~~~i~~nF~~l~~~ 84 (305)
T TIGR00006 8 LLDEVVEGLNIKPDG--IYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLS-DFEGRVVLIHDNFANFFEH 84 (305)
T ss_pred hHHHHHHhcCcCCCC--EEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHh-hcCCcEEEEeCCHHHHHHH
Confidence 455666666655544 8999999999999998875 36777776654443332222 11224555555543322
Q ss_pred ---CCCCCeeEEEecc
Q 009069 278 ---YPSRAFDMAHCSR 290 (544)
Q Consensus 278 ---fpd~sFDlV~~~~ 290 (544)
...+++|.|+...
T Consensus 85 l~~~~~~~vDgIl~DL 100 (305)
T TIGR00006 85 LDELLVTKIDGILVDL 100 (305)
T ss_pred HHhcCCCcccEEEEec
Confidence 1235688887644
No 296
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=70.00 E-value=8.4 Score=41.06 Aligned_cols=107 Identities=17% Similarity=0.114 Sum_probs=64.7
Q ss_pred ccCCCCCEEEEeCCCCcHHHHHHhhCC--cEEEeCCccchHH---HHH----HHHHHcC---CCeEEEEeccccCCCC-C
Q 009069 214 LKDGSIRTAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHE---AQV----QFALERG---VPALIGVMASIRLPYP-S 280 (544)
Q Consensus 214 l~~g~~r~VLDIGCGtG~~a~~La~~~--V~~vdisp~dls~---a~v----~~A~erg---v~~~~~v~d~~~LPfp-d 280 (544)
.++|+ .|+|-=.|||++....+..| +.+.||+..+++. ... ++.. -| ....+..+|...-|+- .
T Consensus 206 v~pGd--ivyDPFVGTGslLvsaa~FGa~viGtDIDyr~vragrg~~~si~aNFkQ-Yg~~~~fldvl~~D~sn~~~rsn 282 (421)
T KOG2671|consen 206 VKPGD--IVYDPFVGTGSLLVSAAHFGAYVIGTDIDYRTVRAGRGEDESIKANFKQ-YGSSSQFLDVLTADFSNPPLRSN 282 (421)
T ss_pred cCCCC--EEecCccccCceeeehhhhcceeeccccchheeecccCCCcchhHhHHH-hCCcchhhheeeecccCcchhhc
Confidence 44554 89999999999887777765 5566675554431 100 1111 11 1234556676666643 4
Q ss_pred CCeeEEEeccc------------------------ccccccCh--------HHHHHHHHHcccCCcEEEEEeCCC
Q 009069 281 RAFDMAHCSRC------------------------LIPWGQYD--------GLYLIEVDRVLRPGGYWILSGPPV 323 (544)
Q Consensus 281 ~sFDlV~~~~~------------------------l~h~~~d~--------~~~L~Ei~RVLKPGG~Lvis~pp~ 323 (544)
..||.|+|-.- ..|.+... ...|.-..|+|.-||.+++--|+.
T Consensus 283 ~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~p~~ 357 (421)
T KOG2671|consen 283 LKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWLPTI 357 (421)
T ss_pred ceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEecCch
Confidence 57999999211 11222111 256777889999999999987743
No 297
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=69.82 E-value=20 Score=37.70 Aligned_cols=102 Identities=20% Similarity=0.211 Sum_probs=59.8
Q ss_pred HHHHhcccCCCCCEEEEeCC--CCcHHHHHHhhC-CcEEEeCCccchHHHHHHHHHHcCCCeEEE--Eec-cccC--CCC
Q 009069 208 IGKLINLKDGSIRTAIDTGC--GVASWGAYLMSR-NILAVSFAPRDTHEAQVQFALERGVPALIG--VMA-SIRL--PYP 279 (544)
Q Consensus 208 L~~lL~l~~g~~r~VLDIGC--GtG~~a~~La~~-~V~~vdisp~dls~a~v~~A~ergv~~~~~--v~d-~~~L--Pfp 279 (544)
+.+...++.++ +||=.|. |.|+++..|++. +...+-.+. +.+..+++++.|....+. ..| .+.. ...
T Consensus 134 l~~~~~l~~g~--~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~---s~~k~~~~~~lGAd~vi~y~~~~~~~~v~~~t~ 208 (326)
T COG0604 134 LFDRAGLKPGE--TVLVHGAAGGVGSAAIQLAKALGATVVAVVS---SSEKLELLKELGADHVINYREEDFVEQVRELTG 208 (326)
T ss_pred HHHhcCCCCCC--EEEEecCCchHHHHHHHHHHHcCCcEEEEec---CHHHHHHHHhcCCCEEEcCCcccHHHHHHHHcC
Confidence 33334445544 8998884 456888888876 533333322 123333666666443332 111 0011 122
Q ss_pred CCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeCC
Q 009069 280 SRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPP 322 (544)
Q Consensus 280 d~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~pp 322 (544)
...+|+|+..- ....+.+..+.|+++|.++..+..
T Consensus 209 g~gvDvv~D~v--------G~~~~~~~l~~l~~~G~lv~ig~~ 243 (326)
T COG0604 209 GKGVDVVLDTV--------GGDTFAASLAALAPGGRLVSIGAL 243 (326)
T ss_pred CCCceEEEECC--------CHHHHHHHHHHhccCCEEEEEecC
Confidence 34699998633 357888899999999999998653
No 298
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=69.72 E-value=29 Score=35.47 Aligned_cols=91 Identities=16% Similarity=0.105 Sum_probs=49.8
Q ss_pred CEEEEeCCC-CcHHHHHHhhC-CcE-EEeCCccchHHHHHHHHHHcCCCeEEEEecccc----CCCCCCCeeEEEecccc
Q 009069 220 RTAIDTGCG-VASWGAYLMSR-NIL-AVSFAPRDTHEAQVQFALERGVPALIGVMASIR----LPYPSRAFDMAHCSRCL 292 (544)
Q Consensus 220 r~VLDIGCG-tG~~a~~La~~-~V~-~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~----LPfpd~sFDlV~~~~~l 292 (544)
.+||-+|+| .|..+..+++. ++. ++-++. +....+++.+.+.. .+...+... .....+.+|+|+....
T Consensus 161 ~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~---~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~vd~v~~~~~- 235 (334)
T cd08234 161 DSVLVFGAGPIGLLLAQLLKLNGASRVTVAEP---NEEKLELAKKLGAT-ETVDPSREDPEAQKEDNPYGFDVVIEATG- 235 (334)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCcEEEEECC---CHHHHHHHHHhCCe-EEecCCCCCHHHHHHhcCCCCcEEEECCC-
Confidence 488988865 24555555554 543 222222 23334455555543 221111111 0113456999986321
Q ss_pred cccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 293 IPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 293 ~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
....+.++.+.|+++|.++..+.
T Consensus 236 ------~~~~~~~~~~~l~~~G~~v~~g~ 258 (334)
T cd08234 236 ------VPKTLEQAIEYARRGGTVLVFGV 258 (334)
T ss_pred ------ChHHHHHHHHHHhcCCEEEEEec
Confidence 14678889999999999988764
No 299
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=69.60 E-value=39 Score=34.47 Aligned_cols=93 Identities=15% Similarity=0.128 Sum_probs=51.1
Q ss_pred CCEEEEeCCC-CcHHHHHHhhC-CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEecccccccc
Q 009069 219 IRTAIDTGCG-VASWGAYLMSR-NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWG 296 (544)
Q Consensus 219 ~r~VLDIGCG-tG~~a~~La~~-~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~sFDlV~~~~~l~h~~ 296 (544)
+.+||-+|+| .|..+..+++. ++.++-++. ++...+++.+.+....+.........-..+.+|+++....
T Consensus 163 ~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~---~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~vi~~~~----- 234 (330)
T cd08245 163 GERVAVLGIGGLGHLAVQYARAMGFETVAITR---SPDKRELARKLGADEVVDSGAELDEQAAAGGADVILVTVV----- 234 (330)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeC---CHHHHHHHHHhCCcEEeccCCcchHHhccCCCCEEEECCC-----
Confidence 3478888886 56666556554 554444322 2334445544453322211110000001246898885321
Q ss_pred cChHHHHHHHHHcccCCcEEEEEeC
Q 009069 297 QYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 297 ~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
....+.++.+.|+++|.++..+.
T Consensus 235 --~~~~~~~~~~~l~~~G~~i~~~~ 257 (330)
T cd08245 235 --SGAAAEAALGGLRRGGRIVLVGL 257 (330)
T ss_pred --cHHHHHHHHHhcccCCEEEEECC
Confidence 13577888999999999998754
No 300
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=68.88 E-value=28 Score=33.82 Aligned_cols=90 Identities=20% Similarity=0.173 Sum_probs=51.0
Q ss_pred CCEEEEeCCCC-cHHHHHHhhC-CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccC-------CCCCCCeeEEEec
Q 009069 219 IRTAIDTGCGV-ASWGAYLMSR-NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRL-------PYPSRAFDMAHCS 289 (544)
Q Consensus 219 ~r~VLDIGCGt-G~~a~~La~~-~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~L-------Pfpd~sFDlV~~~ 289 (544)
+.+||.+|+|. |..+..+++. +..++-++.. +...+.+.+.+....+ +.... ....+.+|+|+..
T Consensus 135 ~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~~~~---~~~~~~~~~~~~~~~~~~~d~vi~~ 208 (271)
T cd05188 135 GDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRS---DEKLELAKELGADHVI---DYKEEDLEEELRLTGGGGADVVIDA 208 (271)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCC---HHHHHHHHHhCCceec---cCCcCCHHHHHHHhcCCCCCEEEEC
Confidence 44899999985 6566556553 4444333222 2333444444432211 11111 1124569999864
Q ss_pred ccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 290 RCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 290 ~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
.. ....+..+.+.|+++|.++..+.
T Consensus 209 ~~-------~~~~~~~~~~~l~~~G~~v~~~~ 233 (271)
T cd05188 209 VG-------GPETLAQALRLLRPGGRIVVVGG 233 (271)
T ss_pred CC-------CHHHHHHHHHhcccCCEEEEEcc
Confidence 31 12567778899999999998764
No 301
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=68.83 E-value=79 Score=32.25 Aligned_cols=102 Identities=13% Similarity=0.029 Sum_probs=64.9
Q ss_pred CCEEEEeCCCCcHHHHHHhhC-CcEEEeCCccchHHHHHHHHHHcC----CCeEEEEeccc-----cC---CCCCCCeeE
Q 009069 219 IRTAIDTGCGVASWGAYLMSR-NILAVSFAPRDTHEAQVQFALERG----VPALIGVMASI-----RL---PYPSRAFDM 285 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~-~V~~vdisp~dls~a~v~~A~erg----v~~~~~v~d~~-----~L---Pfpd~sFDl 285 (544)
.+.|+.+|||-=+-+..|... ++...+++-.+..+...+...+.+ ....++..|.. .| .|..+.--+
T Consensus 82 ~~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~ptl 161 (260)
T TIGR00027 82 IRQVVILGAGLDTRAYRLPWPDGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTAPTA 161 (260)
T ss_pred CcEEEEeCCccccHHHhcCCCCCCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCCCee
Confidence 346999999998888888643 688889866555444444444322 23344444432 11 132333456
Q ss_pred EEecccccccccCh-HHHHHHHHHcccCCcEEEEEe
Q 009069 286 AHCSRCLIPWGQYD-GLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 286 V~~~~~l~h~~~d~-~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
+++-.++..+.++. ..+|..+.+...||+.+++..
T Consensus 162 ~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~ 197 (260)
T TIGR00027 162 WLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDY 197 (260)
T ss_pred eeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEe
Confidence 66666665555433 678888988888999999974
No 302
>PHA01634 hypothetical protein
Probab=67.83 E-value=32 Score=31.92 Aligned_cols=30 Identities=20% Similarity=0.227 Sum_probs=23.3
Q ss_pred CCEEEEeCCCCcHHHHHHhhCC---cEEEeCCc
Q 009069 219 IRTAIDTGCGVASWGAYLMSRN---ILAVSFAP 248 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~---V~~vdisp 248 (544)
+++|+|||.+.|..+.+++-+| |.++..++
T Consensus 29 ~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~ 61 (156)
T PHA01634 29 QRTIQIVGADCGSSALYFLLRGASFVVQYEKEE 61 (156)
T ss_pred CCEEEEecCCccchhhHHhhcCccEEEEeccCH
Confidence 5689999999999999988764 55555544
No 303
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=67.43 E-value=11 Score=36.22 Aligned_cols=22 Identities=36% Similarity=0.469 Sum_probs=19.3
Q ss_pred HHHHHHHHHcccCCcEEEEEeC
Q 009069 300 GLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 300 ~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
...+.++.|+|||||.+++...
T Consensus 36 ~~~~~~~~rvLk~~g~~~i~~~ 57 (231)
T PF01555_consen 36 EEWLKECYRVLKPGGSIFIFID 57 (231)
T ss_dssp HHHHHHHHHHEEEEEEEEEEE-
T ss_pred HHHHHHHHhhcCCCeeEEEEec
Confidence 5789999999999999999865
No 304
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=66.78 E-value=31 Score=36.11 Aligned_cols=92 Identities=12% Similarity=0.032 Sum_probs=51.3
Q ss_pred CCEEEEeCCCC-cHHHHHHhhC-CcE-EEeCCccchHHHHHHHHHHcCCCeEEEEeccccC------CCCCCCeeEEEec
Q 009069 219 IRTAIDTGCGV-ASWGAYLMSR-NIL-AVSFAPRDTHEAQVQFALERGVPALIGVMASIRL------PYPSRAFDMAHCS 289 (544)
Q Consensus 219 ~r~VLDIGCGt-G~~a~~La~~-~V~-~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~L------Pfpd~sFDlV~~~ 289 (544)
+.+||=.|+|. |..+..+++. ++. ++-+ +.++...+++++.|....+.. ..... ......+|+|+-.
T Consensus 177 g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~---~~~~~~~~~~~~~Ga~~~i~~-~~~~~~~~i~~~~~~~g~d~vid~ 252 (358)
T TIGR03451 177 GDSVAVIGCGGVGDAAIAGAALAGASKIIAV---DIDDRKLEWAREFGATHTVNS-SGTDPVEAIRALTGGFGADVVIDA 252 (358)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEE---cCCHHHHHHHHHcCCceEEcC-CCcCHHHHHHHHhCCCCCCEEEEC
Confidence 34888888752 4555555554 542 3333 223455667766665322211 11000 0122358988843
Q ss_pred ccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 290 RCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 290 ~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
-. ....+.+..+.||+||.+++.+.
T Consensus 253 ~g-------~~~~~~~~~~~~~~~G~iv~~G~ 277 (358)
T TIGR03451 253 VG-------RPETYKQAFYARDLAGTVVLVGV 277 (358)
T ss_pred CC-------CHHHHHHHHHHhccCCEEEEECC
Confidence 21 13567888899999999999864
No 305
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=66.63 E-value=30 Score=35.55 Aligned_cols=92 Identities=21% Similarity=0.194 Sum_probs=50.3
Q ss_pred CCEEEEeCCCC-cHHHHHHhhC-Cc-EEEeCCccchHHHHHHHHHHcCCCeEEEEec---cccCCCCCCCeeEEEecccc
Q 009069 219 IRTAIDTGCGV-ASWGAYLMSR-NI-LAVSFAPRDTHEAQVQFALERGVPALIGVMA---SIRLPYPSRAFDMAHCSRCL 292 (544)
Q Consensus 219 ~r~VLDIGCGt-G~~a~~La~~-~V-~~vdisp~dls~a~v~~A~ergv~~~~~v~d---~~~LPfpd~sFDlV~~~~~l 292 (544)
+.+||-.|+|. |..+..+++. ++ .++-++. ++.+.+.+.+.+....+ ... ...+....+.+|+|+....
T Consensus 166 ~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~---s~~~~~~~~~~g~~~vi-~~~~~~~~~~~~~~~~vd~vld~~g- 240 (339)
T cd08232 166 GKRVLVTGAGPIGALVVAAARRAGAAEIVATDL---ADAPLAVARAMGADETV-NLARDPLAAYAADKGDFDVVFEASG- 240 (339)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEECC---CHHHHHHHHHcCCCEEE-cCCchhhhhhhccCCCccEEEECCC-
Confidence 45788888764 5565556553 55 3333322 23333444444432221 111 1112212235899985432
Q ss_pred cccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 293 IPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 293 ~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
....+.++.+.|+++|.++..+.
T Consensus 241 ------~~~~~~~~~~~L~~~G~~v~~g~ 263 (339)
T cd08232 241 ------APAALASALRVVRPGGTVVQVGM 263 (339)
T ss_pred ------CHHHHHHHHHHHhcCCEEEEEec
Confidence 13568889999999999997753
No 306
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=66.20 E-value=27 Score=36.78 Aligned_cols=92 Identities=18% Similarity=0.146 Sum_probs=50.8
Q ss_pred CEEEEeCCC-CcHHHHHHhhC-Cc-EEEeCCccchHHHHHHHHHHcCCCeEEEEecc---ccC-CCCCCCeeEEEecccc
Q 009069 220 RTAIDTGCG-VASWGAYLMSR-NI-LAVSFAPRDTHEAQVQFALERGVPALIGVMAS---IRL-PYPSRAFDMAHCSRCL 292 (544)
Q Consensus 220 r~VLDIGCG-tG~~a~~La~~-~V-~~vdisp~dls~a~v~~A~ergv~~~~~v~d~---~~L-Pfpd~sFDlV~~~~~l 292 (544)
.+||=+|+| .|.++..+++. +. .++-+ +.++...+++++.|....+...+. ..+ ....+.+|+|+-.-.
T Consensus 193 ~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~---~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~i~~~~~~g~d~vid~~G- 268 (371)
T cd08281 193 QSVAVVGLGGVGLSALLGAVAAGASQVVAV---DLNEDKLALARELGATATVNAGDPNAVEQVRELTGGGVDYAFEMAG- 268 (371)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCcEEEE---cCCHHHHHHHHHcCCceEeCCCchhHHHHHHHHhCCCCCEEEECCC-
Confidence 378778876 34555555553 44 23333 223455667766665332221110 000 011235899885321
Q ss_pred cccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 293 IPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 293 ~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
....+....+.|++||.+++.+.
T Consensus 269 ------~~~~~~~~~~~l~~~G~iv~~G~ 291 (371)
T cd08281 269 ------SVPALETAYEITRRGGTTVTAGL 291 (371)
T ss_pred ------ChHHHHHHHHHHhcCCEEEEEcc
Confidence 13567888899999999998764
No 307
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=65.69 E-value=5.2 Score=41.41 Aligned_cols=39 Identities=18% Similarity=0.371 Sum_probs=25.1
Q ss_pred CeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEe
Q 009069 282 AFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 282 sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
.||+|.++..+.........+.......+++.|.+++.+
T Consensus 196 ~ydlIlsSetiy~~~~~~~~~~~~r~~l~~~D~~~~~aA 234 (282)
T KOG2920|consen 196 HYDLILSSETIYSIDSLAVLYLLHRPCLLKTDGVFYVAA 234 (282)
T ss_pred chhhhhhhhhhhCcchhhhhHhhhhhhcCCccchhhhhh
Confidence 678888777663333322233566677888899888764
No 308
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=65.44 E-value=24 Score=38.15 Aligned_cols=95 Identities=15% Similarity=0.184 Sum_probs=56.8
Q ss_pred CEEEEeCCCCcHHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCC---eEEEEeccccCC-CCCCCeeEEEecc
Q 009069 220 RTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGVP---ALIGVMASIRLP-YPSRAFDMAHCSR 290 (544)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~-----~V~~vdisp~dls~a~v~~A~ergv~---~~~~v~d~~~LP-fpd~sFDlV~~~~ 290 (544)
-+|||.=+|+|.=+.+.+.. .|++-|+++....- ..+.+..+++. +.+...|+..+= ...+.||+|-.
T Consensus 51 ~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~-i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDl-- 127 (377)
T PF02005_consen 51 IRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVEL-IKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDL-- 127 (377)
T ss_dssp EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHH-HHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE--
T ss_pred ceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHH-HHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEe--
Confidence 47999999999655554433 35556676544322 22223344544 355555655432 24678999974
Q ss_pred cccccccChHHHHHHHHHcccCCcEEEEEe
Q 009069 291 CLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 291 ~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
.++.. +..+|..+.+.+|.||+|.++.
T Consensus 128 --DPfGS-p~pfldsA~~~v~~gGll~vTa 154 (377)
T PF02005_consen 128 --DPFGS-PAPFLDSALQAVKDGGLLCVTA 154 (377)
T ss_dssp ----SS---HHHHHHHHHHEEEEEEEEEEE
T ss_pred --CCCCC-ccHhHHHHHHHhhcCCEEEEec
Confidence 34443 6899999999999999999984
No 309
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=65.23 E-value=13 Score=39.20 Aligned_cols=61 Identities=11% Similarity=0.136 Sum_probs=40.0
Q ss_pred CeEEEEeccccCCCCC-------CCeeEEEecccccccccC----hHHHHHHHHHcccCCcEEEEEeCCCCc
Q 009069 265 PALIGVMASIRLPYPS-------RAFDMAHCSRCLIPWGQY----DGLYLIEVDRVLRPGGYWILSGPPVNW 325 (544)
Q Consensus 265 ~~~~~v~d~~~LPfpd-------~sFDlV~~~~~l~h~~~d----~~~~L~Ei~RVLKPGG~Lvis~pp~~w 325 (544)
.+.|.+.|+..+.-++ .+.|+|...+.+..+... ...+|..+..+++||-+|+|++.|..+
T Consensus 176 ~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDSpGSY 247 (315)
T PF11312_consen 176 NVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDSPGSY 247 (315)
T ss_pred eeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcCCCCc
Confidence 4566666765554322 246777665555443321 258999999999999999998755443
No 310
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=65.23 E-value=38 Score=35.53 Aligned_cols=92 Identities=14% Similarity=0.066 Sum_probs=53.2
Q ss_pred CCEEEEeCC--CCcHHHHHHhhC-CcEEEeCCccchHHHHHHHHH-HcCCCeEEEEeccccC-----CCCCCCeeEEEec
Q 009069 219 IRTAIDTGC--GVASWGAYLMSR-NILAVSFAPRDTHEAQVQFAL-ERGVPALIGVMASIRL-----PYPSRAFDMAHCS 289 (544)
Q Consensus 219 ~r~VLDIGC--GtG~~a~~La~~-~V~~vdisp~dls~a~v~~A~-ergv~~~~~v~d~~~L-----Pfpd~sFDlV~~~ 289 (544)
+.+||=.|+ |.|.++..+++. |+.++.++. +....++++ +.|....+...+...+ ....+.+|+|+..
T Consensus 159 g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~---~~~k~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvD~v~d~ 235 (348)
T PLN03154 159 GDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAG---SSQKVDLLKNKLGFDEAFNYKEEPDLDAALKRYFPEGIDIYFDN 235 (348)
T ss_pred CCEEEEecCccHHHHHHHHHHHHcCCEEEEEcC---CHHHHHHHHHhcCCCEEEECCCcccHHHHHHHHCCCCcEEEEEC
Confidence 348998887 367777777765 665444422 233444544 4454333221100000 0112468998853
Q ss_pred ccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 290 RCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 290 ~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
- ....+.++.+.|++||.+++.+.
T Consensus 236 v--------G~~~~~~~~~~l~~~G~iv~~G~ 259 (348)
T PLN03154 236 V--------GGDMLDAALLNMKIHGRIAVCGM 259 (348)
T ss_pred C--------CHHHHHHHHHHhccCCEEEEECc
Confidence 2 13577889999999999998764
No 311
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=65.03 E-value=24 Score=37.33 Aligned_cols=89 Identities=20% Similarity=0.229 Sum_probs=55.6
Q ss_pred EEEEeCCCC-cHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcC-CCeEEEEecc----ccCCCC-CCCeeEEEec
Q 009069 221 TAIDTGCGV-ASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERG-VPALIGVMAS----IRLPYP-SRAFDMAHCS 289 (544)
Q Consensus 221 ~VLDIGCGt-G~~a~~La~~----~V~~vdisp~dls~a~v~~A~erg-v~~~~~v~d~----~~LPfp-d~sFDlV~~~ 289 (544)
+|+=+|||. |.++..+++. .+.++|. ++..+++|++.+ ....+..... ..+... ...||+|+=.
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~-----~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~ 245 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDR-----SPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEA 245 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCC-----CHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEEC
Confidence 899999995 7666666654 4566655 456677787743 2222211110 000111 2369999843
Q ss_pred ccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 290 RCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 290 ~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
-. ....+..+.+++||||.+++.+-
T Consensus 246 ~G-------~~~~~~~ai~~~r~gG~v~~vGv 270 (350)
T COG1063 246 VG-------SPPALDQALEALRPGGTVVVVGV 270 (350)
T ss_pred CC-------CHHHHHHHHHHhcCCCEEEEEec
Confidence 32 24588999999999999999875
No 312
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=64.55 E-value=11 Score=36.05 Aligned_cols=44 Identities=9% Similarity=0.034 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC--CcEEEeCCc
Q 009069 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAP 248 (544)
Q Consensus 202 ~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~V~~vdisp 248 (544)
...++++.+.. ...+..|||.=||+|+.+.+..+. ...++++++
T Consensus 178 ~~l~~~lI~~~---t~~gdiVlDpF~GSGTT~~aa~~l~R~~ig~E~~~ 223 (231)
T PF01555_consen 178 VELIERLIKAS---TNPGDIVLDPFAGSGTTAVAAEELGRRYIGIEIDE 223 (231)
T ss_dssp HHHHHHHHHHH---S-TT-EEEETT-TTTHHHHHHHHTT-EEEEEESSH
T ss_pred HHHHHHHHHhh---hccceeeehhhhccChHHHHHHHcCCeEEEEeCCH
Confidence 34445555444 233458999999999877776655 577777754
No 313
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=62.64 E-value=15 Score=36.95 Aligned_cols=71 Identities=14% Similarity=0.061 Sum_probs=40.9
Q ss_pred CEEEEeCCCCcHHHHHHhhC------------CcEEEeCCccchHHHHHHHHHH-------cCCCeEEEEeccccCCCCC
Q 009069 220 RTAIDTGCGVASWGAYLMSR------------NILAVSFAPRDTHEAQVQFALE-------RGVPALIGVMASIRLPYPS 280 (544)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~------------~V~~vdisp~dls~a~v~~A~e-------rgv~~~~~v~d~~~LPfpd 280 (544)
-+|+|+|.|.|.++..+++. .+..+++++... +.|.+.... .+.++.+. .+....|
T Consensus 20 ~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~-~~Q~~~L~~~~~~~~~~~~~i~w~-~~l~~~p--- 94 (252)
T PF02636_consen 20 LRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLR-ERQKERLSEHAPKDTEFGDPIRWL-DDLEEVP--- 94 (252)
T ss_dssp EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCH-HHHHHHCCCH---STTTCGCEEEE-SSGGCS----
T ss_pred cEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHH-HHHHHHhhhhcccccccCCccchh-hhhhccc---
Confidence 58999999999998887652 478889988544 333332222 12234442 2333334
Q ss_pred CCeeEEEecccccccc
Q 009069 281 RAFDMAHCSRCLIPWG 296 (544)
Q Consensus 281 ~sFDlV~~~~~l~h~~ 296 (544)
..-+|+++..+.-++
T Consensus 95 -~~~~iiaNE~~DAlP 109 (252)
T PF02636_consen 95 -FPGFIIANELFDALP 109 (252)
T ss_dssp -CCEEEEEESSGGGS-
T ss_pred -CCEEEEEeeehhcCc
Confidence 456788888775555
No 314
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=61.95 E-value=91 Score=33.77 Aligned_cols=92 Identities=10% Similarity=0.036 Sum_probs=56.7
Q ss_pred EEEEeCCCCcHHHHHHhhCCcEEEeCCccchHHHHHHHHHHcCCCeE-EEEeccccCCCCCCCeeEEEecccccccccCh
Q 009069 221 TAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGVPAL-IGVMASIRLPYPSRAFDMAHCSRCLIPWGQYD 299 (544)
Q Consensus 221 ~VLDIGCGtG~~a~~La~~~V~~vdisp~dls~a~v~~A~ergv~~~-~~v~d~~~LPfpd~sFDlV~~~~~l~h~~~d~ 299 (544)
.||=++=..|.++..|+..++..+. +....+.+..+.+..++.+.. +...+. ..+++ +.+|+|+. .++...
T Consensus 47 ~~~i~nd~fGal~~~l~~~~~~~~~-ds~~~~~~~~~n~~~n~~~~~~~~~~~~-~~~~~-~~~d~vl~-----~~PK~~ 118 (378)
T PRK15001 47 PVLILNDAFGALSCALAEHKPYSIG-DSYISELATRENLRLNGIDESSVKFLDS-TADYP-QQPGVVLI-----KVPKTL 118 (378)
T ss_pred CEEEEcCchhHHHHHHHhCCCCeee-hHHHHHHHHHHHHHHcCCCcccceeecc-ccccc-CCCCEEEE-----EeCCCH
Confidence 5899999999999999977665331 111223334444455565433 222222 22333 34899875 344433
Q ss_pred ---HHHHHHHHHcccCCcEEEEEe
Q 009069 300 ---GLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 300 ---~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
+..|..+.++|.||+.++..+
T Consensus 119 ~~l~~~l~~l~~~l~~~~~ii~g~ 142 (378)
T PRK15001 119 ALLEQQLRALRKVVTSDTRIIAGA 142 (378)
T ss_pred HHHHHHHHHHHhhCCCCCEEEEEE
Confidence 567888889999999976553
No 315
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=61.14 E-value=41 Score=34.61 Aligned_cols=93 Identities=17% Similarity=0.146 Sum_probs=49.9
Q ss_pred CCEEEEeCCC-CcHHHHHHhhC-CcE-EEeCCccchHHHHHHHHHHcCCCeEEEEecc--ccC-C-CCCCCeeEEEeccc
Q 009069 219 IRTAIDTGCG-VASWGAYLMSR-NIL-AVSFAPRDTHEAQVQFALERGVPALIGVMAS--IRL-P-YPSRAFDMAHCSRC 291 (544)
Q Consensus 219 ~r~VLDIGCG-tG~~a~~La~~-~V~-~vdisp~dls~a~v~~A~ergv~~~~~v~d~--~~L-P-fpd~sFDlV~~~~~ 291 (544)
+.+||=+|+| .|.++..+++. +.. ++-+ +.++...+++.+.|....+...+. ..+ . .....+|+|+-...
T Consensus 164 g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~---~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~d~vid~~g 240 (339)
T cd08239 164 RDTVLVVGAGPVGLGALMLARALGAEDVIGV---DPSPERLELAKALGADFVINSGQDDVQEIRELTSGAGADVAIECSG 240 (339)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEE---CCCHHHHHHHHHhCCCEEEcCCcchHHHHHHHhCCCCCCEEEECCC
Confidence 3478888875 23444455543 433 3323 223445566666665322211110 001 0 12346999985321
Q ss_pred ccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 292 LIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 292 l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
....+.+..+.|+++|.+++.+.
T Consensus 241 -------~~~~~~~~~~~l~~~G~~v~~g~ 263 (339)
T cd08239 241 -------NTAARRLALEAVRPWGRLVLVGE 263 (339)
T ss_pred -------CHHHHHHHHHHhhcCCEEEEEcC
Confidence 13466788899999999998764
No 316
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=60.75 E-value=45 Score=33.63 Aligned_cols=90 Identities=21% Similarity=0.139 Sum_probs=50.9
Q ss_pred CCEEEEeCCC-CcHHHHHHhhC-Cc---EEEeCCccchHHHHHHHHHHcCCCeEEEEecc----ccCCCCCCCeeEEEec
Q 009069 219 IRTAIDTGCG-VASWGAYLMSR-NI---LAVSFAPRDTHEAQVQFALERGVPALIGVMAS----IRLPYPSRAFDMAHCS 289 (544)
Q Consensus 219 ~r~VLDIGCG-tG~~a~~La~~-~V---~~vdisp~dls~a~v~~A~ergv~~~~~v~d~----~~LPfpd~sFDlV~~~ 289 (544)
+.+||=+|+| .|..+..+++. ++ .+++. ++...+++++.|....+...+. ..+ .....+|+|+-.
T Consensus 121 g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~-----~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~-~~~~g~d~vid~ 194 (280)
T TIGR03366 121 GRRVLVVGAGMLGLTAAAAAAAAGAARVVAADP-----SPDRRELALSFGATALAEPEVLAERQGGL-QNGRGVDVALEF 194 (280)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECC-----CHHHHHHHHHcCCcEecCchhhHHHHHHH-hCCCCCCEEEEC
Confidence 4478888875 34455555543 43 34433 3345566766665332211110 011 122358988753
Q ss_pred ccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 290 RCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 290 ~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
-. ....+.++.+.|+|||.+++.+.
T Consensus 195 ~G-------~~~~~~~~~~~l~~~G~iv~~G~ 219 (280)
T TIGR03366 195 SG-------ATAAVRACLESLDVGGTAVLAGS 219 (280)
T ss_pred CC-------ChHHHHHHHHHhcCCCEEEEecc
Confidence 21 14578888999999999998763
No 317
>PF13334 DUF4094: Domain of unknown function (DUF4094)
Probab=58.05 E-value=6.8 Score=34.08 Aligned_cols=20 Identities=30% Similarity=0.423 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHhhhhccCCC
Q 009069 27 LVTILCTIFYLAGMWQHSPG 46 (544)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~ 46 (544)
.+++||+++|++|.++.+..
T Consensus 4 w~l~Lc~~SF~~G~lft~R~ 23 (95)
T PF13334_consen 4 WVLLLCIASFCAGMLFTNRM 23 (95)
T ss_pred HHHHHHHHHHHHHHHHhccc
Confidence 36889999999999998653
No 318
>PRK11524 putative methyltransferase; Provisional
Probab=57.94 E-value=18 Score=37.17 Aligned_cols=47 Identities=15% Similarity=0.141 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHh--hCCcEEEeCCccch
Q 009069 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLM--SRNILAVSFAPRDT 251 (544)
Q Consensus 202 ~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La--~~~V~~vdisp~dl 251 (544)
...++++.+.. ...+..|||-=||+|+.+.... .|..+++++++.-.
T Consensus 195 ~~L~erlI~~~---S~~GD~VLDPF~GSGTT~~AA~~lgR~~IG~Ei~~~Y~ 243 (284)
T PRK11524 195 EALLKRIILAS---SNPGDIVLDPFAGSFTTGAVAKASGRKFIGIEINSEYI 243 (284)
T ss_pred HHHHHHHHHHh---CCCCCEEEECCCCCcHHHHHHHHcCCCEEEEeCCHHHH
Confidence 33444444443 3335589999999997766554 45788888866433
No 319
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=57.90 E-value=68 Score=32.57 Aligned_cols=91 Identities=16% Similarity=0.154 Sum_probs=52.6
Q ss_pred CCEEEEeCC--CCcHHHHHHhhC-CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccC-----CCCCCCeeEEEecc
Q 009069 219 IRTAIDTGC--GVASWGAYLMSR-NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRL-----PYPSRAFDMAHCSR 290 (544)
Q Consensus 219 ~r~VLDIGC--GtG~~a~~La~~-~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~L-----Pfpd~sFDlV~~~~ 290 (544)
+.+||=.|. |.|.++..+++. |+.++-++. +....+++++.|....+.. ..... ....+.+|+|+...
T Consensus 144 g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~---s~~~~~~l~~~Ga~~vi~~-~~~~~~~~v~~~~~~gvd~vld~~ 219 (329)
T cd08294 144 GETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAG---SDDKVAWLKELGFDAVFNY-KTVSLEEALKEAAPDGIDCYFDNV 219 (329)
T ss_pred CCEEEEecCccHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCCEEEeC-CCccHHHHHHHHCCCCcEEEEECC
Confidence 347887874 456677767664 665544422 2334556666665332221 11110 01224689988532
Q ss_pred cccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 291 CLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 291 ~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
....+.+..+.|+++|.++..+.
T Consensus 220 --------g~~~~~~~~~~l~~~G~iv~~g~ 242 (329)
T cd08294 220 --------GGEFSSTVLSHMNDFGRVAVCGS 242 (329)
T ss_pred --------CHHHHHHHHHhhccCCEEEEEcc
Confidence 13567899999999999988753
No 320
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=57.62 E-value=21 Score=36.56 Aligned_cols=64 Identities=11% Similarity=-0.000 Sum_probs=38.4
Q ss_pred EEEEeCCCCcHHHHHHhhCCc---EEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCC--CCCeeEEEecc
Q 009069 221 TAIDTGCGVASWGAYLMSRNI---LAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYP--SRAFDMAHCSR 290 (544)
Q Consensus 221 ~VLDIGCGtG~~a~~La~~~V---~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfp--d~sFDlV~~~~ 290 (544)
+++|+-||.|.+...|.+.|+ .++|+++ .+++....+. +..+...|...+... ...+|+++...
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~-----~a~~~~~~N~-~~~~~~~Di~~~~~~~~~~~~D~l~~gp 70 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDK-----SAAETYEANF-PNKLIEGDITKIDEKDFIPDIDLLTGGF 70 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCH-----HHHHHHHHhC-CCCCccCccccCchhhcCCCCCEEEeCC
Confidence 589999999999888877754 4455533 3333333332 222344555554422 34699999743
No 321
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=57.61 E-value=28 Score=37.43 Aligned_cols=97 Identities=19% Similarity=0.260 Sum_probs=62.1
Q ss_pred CCEEEEeCCCCcHHHHHHhhC-C---cEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCC-CCCeeEEEeccccc
Q 009069 219 IRTAIDTGCGVASWGAYLMSR-N---ILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYP-SRAFDMAHCSRCLI 293 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~-~---V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfp-d~sFDlV~~~~~l~ 293 (544)
..+|||-=+|+|.=+.+.+.. + ++.-|++|....-...+.....+........|+..+-.. ...||+|= +.
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~~~~~fd~ID----iD 128 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHELHRAFDVID----ID 128 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHhcCCCccEEe----cC
Confidence 458999999999777666544 2 444566665544333333322244444444554433222 36788884 33
Q ss_pred ccccChHHHHHHHHHcccCCcEEEEEe
Q 009069 294 PWGQYDGLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 294 h~~~d~~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
++.. +..++..+.|.+|.||++.++.
T Consensus 129 PFGS-PaPFlDaA~~s~~~~G~l~vTA 154 (380)
T COG1867 129 PFGS-PAPFLDAALRSVRRGGLLCVTA 154 (380)
T ss_pred CCCC-CchHHHHHHHHhhcCCEEEEEe
Confidence 4543 6889999999999999999974
No 322
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.34 E-value=55 Score=31.15 Aligned_cols=83 Identities=10% Similarity=0.060 Sum_probs=44.7
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhCC---cEEEeCCccchHHHHHHHHHHcCC--CeEEEEeccccC
Q 009069 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN---ILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIRL 276 (544)
Q Consensus 202 ~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~~---V~~vdisp~dls~a~v~~A~ergv--~~~~~v~d~~~L 276 (544)
.+.++.+..++...+ ..+.+|+|.|.|......++.+ ..++++.|.-+.-+... +.+.+. ...|..-|....
T Consensus 58 teQv~nVLSll~~n~--~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~-a~R~g~~k~trf~RkdlwK~ 134 (199)
T KOG4058|consen 58 TEQVENVLSLLRGNP--KGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLH-AWRAGCAKSTRFRRKDLWKV 134 (199)
T ss_pred HHHHHHHHHHccCCC--CCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHH-HHHHhcccchhhhhhhhhhc
Confidence 344455555554332 2379999999998877777654 55666655433222221 222232 344554455555
Q ss_pred CCCCCCeeEEE
Q 009069 277 PYPSRAFDMAH 287 (544)
Q Consensus 277 Pfpd~sFDlV~ 287 (544)
.+.+-.+-+|+
T Consensus 135 dl~dy~~vviF 145 (199)
T KOG4058|consen 135 DLRDYRNVVIF 145 (199)
T ss_pred cccccceEEEe
Confidence 54444444444
No 323
>PLN02740 Alcohol dehydrogenase-like
Probab=57.14 E-value=58 Score=34.54 Aligned_cols=93 Identities=17% Similarity=0.063 Sum_probs=50.7
Q ss_pred CCEEEEeCCC-CcHHHHHHhhC-Cc-EEEeCCccchHHHHHHHHHHcCCCeEEEEeccc-cC-----CCCCCCeeEEEec
Q 009069 219 IRTAIDTGCG-VASWGAYLMSR-NI-LAVSFAPRDTHEAQVQFALERGVPALIGVMASI-RL-----PYPSRAFDMAHCS 289 (544)
Q Consensus 219 ~r~VLDIGCG-tG~~a~~La~~-~V-~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~-~L-----Pfpd~sFDlV~~~ 289 (544)
+.+||=+|+| .|..+..+++. ++ .++-+ +......+++.+.|....+...+.. .. ....+.+|+|+-.
T Consensus 199 g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~---~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~dvvid~ 275 (381)
T PLN02740 199 GSSVAIFGLGAVGLAVAEGARARGASKIIGV---DINPEKFEKGKEMGITDFINPKDSDKPVHERIREMTGGGVDYSFEC 275 (381)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCcEEEE---cCChHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCCCCEEEEC
Confidence 3488888876 24445555543 44 23333 2234556677666654332211100 00 0112268999853
Q ss_pred ccccccccChHHHHHHHHHcccCC-cEEEEEeC
Q 009069 290 RCLIPWGQYDGLYLIEVDRVLRPG-GYWILSGP 321 (544)
Q Consensus 290 ~~l~h~~~d~~~~L~Ei~RVLKPG-G~Lvis~p 321 (544)
-. ....+.+..+.+++| |.+++.+.
T Consensus 276 ~G-------~~~~~~~a~~~~~~g~G~~v~~G~ 301 (381)
T PLN02740 276 AG-------NVEVLREAFLSTHDGWGLTVLLGI 301 (381)
T ss_pred CC-------ChHHHHHHHHhhhcCCCEEEEEcc
Confidence 31 135778888899997 99988764
No 324
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=56.41 E-value=36 Score=34.99 Aligned_cols=83 Identities=18% Similarity=0.120 Sum_probs=47.7
Q ss_pred CCEEEEeCCC-CcHHHHHHhhC-CcE---EEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEeccccc
Q 009069 219 IRTAIDTGCG-VASWGAYLMSR-NIL---AVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLI 293 (544)
Q Consensus 219 ~r~VLDIGCG-tG~~a~~La~~-~V~---~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~sFDlV~~~~~l~ 293 (544)
+.++|=+||| .|.++..+++. +.. ++|. .+...+.+.... ..+.... ....||+|+-.-.
T Consensus 145 ~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~-----~~~rl~~a~~~~------~i~~~~~--~~~g~Dvvid~~G-- 209 (308)
T TIGR01202 145 VLPDLIVGHGTLGRLLARLTKAAGGSPPAVWET-----NPRRRDGATGYE------VLDPEKD--PRRDYRAIYDASG-- 209 (308)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCC-----CHHHHHhhhhcc------ccChhhc--cCCCCCEEEECCC--
Confidence 3468888876 46676766654 543 3333 223334443221 1111111 2345899885331
Q ss_pred ccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 294 PWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 294 h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
....+.++.+.|++||.+++.+.
T Consensus 210 -----~~~~~~~~~~~l~~~G~iv~~G~ 232 (308)
T TIGR01202 210 -----DPSLIDTLVRRLAKGGEIVLAGF 232 (308)
T ss_pred -----CHHHHHHHHHhhhcCcEEEEEee
Confidence 13567889999999999998864
No 325
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=56.02 E-value=28 Score=39.15 Aligned_cols=93 Identities=12% Similarity=0.039 Sum_probs=53.8
Q ss_pred CCEEEEeCCCCc-HHHHHHhhC-C--cEEEeCCccchHHHHHHHHHHcCCCeEEEEecccc-------------------
Q 009069 219 IRTAIDTGCGVA-SWGAYLMSR-N--ILAVSFAPRDTHEAQVQFALERGVPALIGVMASIR------------------- 275 (544)
Q Consensus 219 ~r~VLDIGCGtG-~~a~~La~~-~--V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~------------------- 275 (544)
+.+||=+|+|.- ..+..++.. + +.++|.. ....+.+++-|. .+...+...
T Consensus 164 ~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~-----~~rle~a~~lGa--~~v~v~~~e~g~~~~gYa~~~s~~~~~~ 236 (511)
T TIGR00561 164 PAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTR-----PEVKEQVQSMGA--EFLELDFKEEGGSGDGYAKVMSEEFIAA 236 (511)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC-----HHHHHHHHHcCC--eEEeccccccccccccceeecCHHHHHH
Confidence 458999999964 555544443 4 4444553 334445554442 222222100
Q ss_pred ----CCCCCCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEE
Q 009069 276 ----LPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILS 319 (544)
Q Consensus 276 ----LPfpd~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis 319 (544)
++-.-..+|+|++.-.. +-...+....+++.+.+|||+.++-.
T Consensus 237 ~~~~~~e~~~~~DIVI~Tali-pG~~aP~Lit~emv~~MKpGsvIVDl 283 (511)
T TIGR00561 237 EMELFAAQAKEVDIIITTALI-PGKPAPKLITEEMVDSMKAGSVIVDL 283 (511)
T ss_pred HHHHHHHHhCCCCEEEECccc-CCCCCCeeehHHHHhhCCCCCEEEEe
Confidence 11112469999875533 44444556889999999999997753
No 326
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=55.84 E-value=69 Score=32.93 Aligned_cols=95 Identities=16% Similarity=0.131 Sum_probs=52.7
Q ss_pred ccCCCCCEEEEeCC--CCcHHHHHHhhC-Cc-EEEeCCccchHHHHHHHHHH-cCCCeEEEEeccccC-----CCCCCCe
Q 009069 214 LKDGSIRTAIDTGC--GVASWGAYLMSR-NI-LAVSFAPRDTHEAQVQFALE-RGVPALIGVMASIRL-----PYPSRAF 283 (544)
Q Consensus 214 l~~g~~r~VLDIGC--GtG~~a~~La~~-~V-~~vdisp~dls~a~v~~A~e-rgv~~~~~v~d~~~L-----Pfpd~sF 283 (544)
...+.+.+||=.|+ |.|..+..+++. |. .++-++. ++...+++.+ -|....+.. ....+ ...++.+
T Consensus 150 ~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~---s~~~~~~~~~~lGa~~vi~~-~~~~~~~~i~~~~~~gv 225 (345)
T cd08293 150 ITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICG---SDEKCQLLKSELGFDAAINY-KTDNVAERLRELCPEGV 225 (345)
T ss_pred CCCCCCCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcC---CHHHHHHHHHhcCCcEEEEC-CCCCHHHHHHHHCCCCc
Confidence 34443358888886 466777777664 65 4444422 2334444443 454332221 11110 0112469
Q ss_pred eEEEecccccccccChHHHHHHHHHcccCCcEEEEEe
Q 009069 284 DMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 284 DlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
|+|+.... ...+.++.+.|++||.++..+
T Consensus 226 d~vid~~g--------~~~~~~~~~~l~~~G~iv~~G 254 (345)
T cd08293 226 DVYFDNVG--------GEISDTVISQMNENSHIILCG 254 (345)
T ss_pred eEEEECCC--------cHHHHHHHHHhccCCEEEEEe
Confidence 99985321 134578899999999999875
No 327
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=55.58 E-value=33 Score=36.41 Aligned_cols=90 Identities=11% Similarity=0.111 Sum_probs=56.2
Q ss_pred CCEEEEeCCCC-cHHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCC---------CCCCCee
Q 009069 219 IRTAIDTGCGV-ASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLP---------YPSRAFD 284 (544)
Q Consensus 219 ~r~VLDIGCGt-G~~a~~La~~----~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LP---------fpd~sFD 284 (544)
+.+||=+|+|. |..+...++. .|.++|+ .+..+++|++-|..+........... +....||
T Consensus 170 Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~-----~~~Rle~Ak~~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~~d 244 (354)
T KOG0024|consen 170 GSKVLVLGAGPIGLLTGLVAKAMGASDVVITDL-----VANRLELAKKFGATVTDPSSHKSSPQELAELVEKALGKKQPD 244 (354)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCCcEEEeec-----CHHHHHHHHHhCCeEEeeccccccHHHHHHHHHhhccccCCC
Confidence 34999999996 4444444443 5666766 45666788776655444332211111 2234588
Q ss_pred EEEecccccccccChHHHHHHHHHcccCCcEEEEEe
Q 009069 285 MAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 285 lV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
+.+....+ +..++.....||+||.+++.+
T Consensus 245 ~~~dCsG~-------~~~~~aai~a~r~gGt~vlvg 273 (354)
T KOG0024|consen 245 VTFDCSGA-------EVTIRAAIKATRSGGTVVLVG 273 (354)
T ss_pred eEEEccCc-------hHHHHHHHHHhccCCEEEEec
Confidence 88753322 466777888999999988885
No 328
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=55.47 E-value=71 Score=31.64 Aligned_cols=91 Identities=20% Similarity=0.137 Sum_probs=48.8
Q ss_pred CCEEEEeCCCC-cHHHHHHhhC-CcE-EEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEeccccccc
Q 009069 219 IRTAIDTGCGV-ASWGAYLMSR-NIL-AVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPW 295 (544)
Q Consensus 219 ~r~VLDIGCGt-G~~a~~La~~-~V~-~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~sFDlV~~~~~l~h~ 295 (544)
+.+||=.|+|. |..+..+++. ++. ++-++. .....+++.+.+....+.. ..........+|+|+....
T Consensus 98 g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~---~~~~~~~~~~~g~~~~~~~--~~~~~~~~~~~d~vl~~~~---- 168 (277)
T cd08255 98 GERVAVVGLGLVGLLAAQLAKAAGAREVVGVDP---DAARRELAEALGPADPVAA--DTADEIGGRGADVVIEASG---- 168 (277)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCcEEEECC---CHHHHHHHHHcCCCccccc--cchhhhcCCCCCEEEEccC----
Confidence 34788888763 4455555543 443 333322 2334455555551111111 1111113446899885321
Q ss_pred ccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 296 GQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 296 ~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
....+.+..+.|+++|.++..+.
T Consensus 169 ---~~~~~~~~~~~l~~~g~~~~~g~ 191 (277)
T cd08255 169 ---SPSALETALRLLRDRGRVVLVGW 191 (277)
T ss_pred ---ChHHHHHHHHHhcCCcEEEEEec
Confidence 13567888999999999998764
No 329
>PRK13699 putative methylase; Provisional
Probab=55.39 E-value=23 Score=35.43 Aligned_cols=33 Identities=12% Similarity=0.114 Sum_probs=25.2
Q ss_pred CCEEEEeCCCCcHHHHHHhh--CCcEEEeCCccch
Q 009069 219 IRTAIDTGCGVASWGAYLMS--RNILAVSFAPRDT 251 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~--~~V~~vdisp~dl 251 (544)
+..|||-=||+|+.+....+ +.+.++++++.-.
T Consensus 164 g~~vlDpf~Gsgtt~~aa~~~~r~~~g~e~~~~y~ 198 (227)
T PRK13699 164 NAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYH 198 (227)
T ss_pred CCEEEeCCCCCCHHHHHHHHcCCCEEEEecCHHHH
Confidence 44899999999987776655 4788888876443
No 330
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=55.15 E-value=59 Score=33.89 Aligned_cols=88 Identities=15% Similarity=0.074 Sum_probs=49.1
Q ss_pred CCEEEEeCCC-CcHHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEecccc
Q 009069 219 IRTAIDTGCG-VASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCL 292 (544)
Q Consensus 219 ~r~VLDIGCG-tG~~a~~La~~-----~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~sFDlV~~~~~l 292 (544)
+.+||=+||| .|.++..++++ .+++++.+ +...+++++-+ ..... + .+. .+..+|+|+-.-.-
T Consensus 164 g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~-----~~k~~~a~~~~--~~~~~-~--~~~-~~~g~d~viD~~G~ 232 (341)
T cd08237 164 RNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKH-----QEKLDLFSFAD--ETYLI-D--DIP-EDLAVDHAFECVGG 232 (341)
T ss_pred CCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCc-----HhHHHHHhhcC--ceeeh-h--hhh-hccCCcEEEECCCC
Confidence 4489999987 34555554442 35556653 33444554322 11111 1 111 11248988843210
Q ss_pred cccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 293 IPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 293 ~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
......+.+..++||+||.+++.+.
T Consensus 233 ----~~~~~~~~~~~~~l~~~G~iv~~G~ 257 (341)
T cd08237 233 ----RGSQSAINQIIDYIRPQGTIGLMGV 257 (341)
T ss_pred ----CccHHHHHHHHHhCcCCcEEEEEee
Confidence 0013578889999999999998864
No 331
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=54.95 E-value=82 Score=32.48 Aligned_cols=92 Identities=15% Similarity=0.058 Sum_probs=52.4
Q ss_pred CCEEEEeCC--CCcHHHHHHhhC-CcEEEeCCccchHHHHHHHHHH-cCCCeEEEEecccc-----CCCCCCCeeEEEec
Q 009069 219 IRTAIDTGC--GVASWGAYLMSR-NILAVSFAPRDTHEAQVQFALE-RGVPALIGVMASIR-----LPYPSRAFDMAHCS 289 (544)
Q Consensus 219 ~r~VLDIGC--GtG~~a~~La~~-~V~~vdisp~dls~a~v~~A~e-rgv~~~~~v~d~~~-----LPfpd~sFDlV~~~ 289 (544)
+.+||=.|+ |.|.++..+++. |+.++-++. +....+++++ .|....+...+... .....+.+|+|+-.
T Consensus 152 g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~---~~~~~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvd~v~d~ 228 (338)
T cd08295 152 GETVFVSAASGAVGQLVGQLAKLKGCYVVGSAG---SDEKVDLLKNKLGFDDAFNYKEEPDLDAALKRYFPNGIDIYFDN 228 (338)
T ss_pred CCEEEEecCccHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHhcCCceeEEcCCcccHHHHHHHhCCCCcEEEEEC
Confidence 348998886 466777777664 665544422 2334455544 45432221110000 00112468998853
Q ss_pred ccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 290 RCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 290 ~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
. ....+.+..+.|+++|.++..+.
T Consensus 229 ~--------g~~~~~~~~~~l~~~G~iv~~G~ 252 (338)
T cd08295 229 V--------GGKMLDAVLLNMNLHGRIAACGM 252 (338)
T ss_pred C--------CHHHHHHHHHHhccCcEEEEecc
Confidence 2 13568889999999999998753
No 332
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=54.31 E-value=70 Score=32.82 Aligned_cols=92 Identities=18% Similarity=0.170 Sum_probs=52.0
Q ss_pred CEEEEeCCCC-cHHHHHHhhC-CcEEEeCCccchHHHHHHHHHHcCCCeEEEEecc---ccC--CCCCCCeeEEEecccc
Q 009069 220 RTAIDTGCGV-ASWGAYLMSR-NILAVSFAPRDTHEAQVQFALERGVPALIGVMAS---IRL--PYPSRAFDMAHCSRCL 292 (544)
Q Consensus 220 r~VLDIGCGt-G~~a~~La~~-~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~---~~L--Pfpd~sFDlV~~~~~l 292 (544)
.+||-.|+|. |..+..+++. ++.++-++.. +...++..+.+....+...+. ..+ -.++..+|+++....
T Consensus 161 ~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s---~~~~~~~~~~g~~~v~~~~~~~~~~~l~~~~~~~~vd~vld~~g- 236 (337)
T cd08261 161 DTVLVVGAGPIGLGVIQVAKARGARVIVVDID---DERLEFARELGADDTINVGDEDVAARLRELTDGEGADVVIDATG- 236 (337)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEECCC---HHHHHHHHHhCCCEEecCcccCHHHHHHHHhCCCCCCEEEECCC-
Confidence 3788888763 5666666664 6655544332 334444444553222211000 000 013456899986421
Q ss_pred cccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 293 IPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 293 ~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
....+.++.+.|+++|.++..+.
T Consensus 237 ------~~~~~~~~~~~l~~~G~~i~~g~ 259 (337)
T cd08261 237 ------NPASMEEAVELVAHGGRVVLVGL 259 (337)
T ss_pred ------CHHHHHHHHHHHhcCCEEEEEcC
Confidence 13578889999999999987653
No 333
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=53.66 E-value=42 Score=35.37 Aligned_cols=92 Identities=11% Similarity=0.022 Sum_probs=47.9
Q ss_pred CCEEEEeCCC-CcHHHHHHhhC-Cc--EEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEecccccc
Q 009069 219 IRTAIDTGCG-VASWGAYLMSR-NI--LAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIP 294 (544)
Q Consensus 219 ~r~VLDIGCG-tG~~a~~La~~-~V--~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~sFDlV~~~~~l~h 294 (544)
+.+||=.|+| .|.++..+++. +. .+++.+.. ...+.+++.|....+...+...+.-..+.+|+|+-.-.
T Consensus 184 g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~----~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~D~vid~~g--- 256 (360)
T PLN02586 184 GKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSN----KEDEAINRLGADSFLVSTDPEKMKAAIGTMDYIIDTVS--- 256 (360)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcc----hhhhHHHhCCCcEEEcCCCHHHHHhhcCCCCEEEECCC---
Confidence 3478878886 35555556554 54 34444321 11233344454322211110011000124788884321
Q ss_pred cccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 295 WGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 295 ~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
....+.+..+.|++||.+++.+.
T Consensus 257 ----~~~~~~~~~~~l~~~G~iv~vG~ 279 (360)
T PLN02586 257 ----AVHALGPLLGLLKVNGKLITLGL 279 (360)
T ss_pred ----CHHHHHHHHHHhcCCcEEEEeCC
Confidence 13467889999999999998864
No 334
>PLN02827 Alcohol dehydrogenase-like
Probab=53.01 E-value=55 Score=34.79 Aligned_cols=93 Identities=15% Similarity=0.025 Sum_probs=49.9
Q ss_pred CCEEEEeCCC-CcHHHHHHhhC-Cc-EEEeCCccchHHHHHHHHHHcCCCeEEEEecc-cc----C-CCCCCCeeEEEec
Q 009069 219 IRTAIDTGCG-VASWGAYLMSR-NI-LAVSFAPRDTHEAQVQFALERGVPALIGVMAS-IR----L-PYPSRAFDMAHCS 289 (544)
Q Consensus 219 ~r~VLDIGCG-tG~~a~~La~~-~V-~~vdisp~dls~a~v~~A~ergv~~~~~v~d~-~~----L-Pfpd~sFDlV~~~ 289 (544)
+.+||=+|+| .|.++..+++. ++ .++-+ +.+....+++.+.|....+...+. .. + ....+.+|+|+-.
T Consensus 194 g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~---~~~~~~~~~a~~lGa~~~i~~~~~~~~~~~~v~~~~~~g~d~vid~ 270 (378)
T PLN02827 194 GSSVVIFGLGTVGLSVAQGAKLRGASQIIGV---DINPEKAEKAKTFGVTDFINPNDLSEPIQQVIKRMTGGGADYSFEC 270 (378)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEE---CCCHHHHHHHHHcCCcEEEcccccchHHHHHHHHHhCCCCCEEEEC
Confidence 3488888875 24444555543 54 23323 112345567766665432211110 00 0 0112258988753
Q ss_pred ccccccccChHHHHHHHHHcccCC-cEEEEEeC
Q 009069 290 RCLIPWGQYDGLYLIEVDRVLRPG-GYWILSGP 321 (544)
Q Consensus 290 ~~l~h~~~d~~~~L~Ei~RVLKPG-G~Lvis~p 321 (544)
-. ....+.+..+.|++| |.+++.+.
T Consensus 271 ~G-------~~~~~~~~l~~l~~g~G~iv~~G~ 296 (378)
T PLN02827 271 VG-------DTGIATTALQSCSDGWGLTVTLGV 296 (378)
T ss_pred CC-------ChHHHHHHHHhhccCCCEEEEECC
Confidence 21 134678889999999 99998764
No 335
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=51.54 E-value=1.5e+02 Score=30.27 Aligned_cols=54 Identities=19% Similarity=0.036 Sum_probs=31.3
Q ss_pred CeEEEEecc-ccCC-CCCCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 265 PALIGVMAS-IRLP-YPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 265 ~~~~~v~d~-~~LP-fpd~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
.+.++.+.. +.+| .+...+-+++.-. .+-+.....|..++..|.|||++++.+.
T Consensus 158 ~v~~vkG~F~dTLp~~p~~~IAll~lD~---DlYesT~~aLe~lyprl~~GGiIi~DDY 213 (248)
T PF05711_consen 158 NVRFVKGWFPDTLPDAPIERIALLHLDC---DLYESTKDALEFLYPRLSPGGIIIFDDY 213 (248)
T ss_dssp TEEEEES-HHHHCCC-TT--EEEEEE------SHHHHHHHHHHHGGGEEEEEEEEESST
T ss_pred cEEEECCcchhhhccCCCccEEEEEEec---cchHHHHHHHHHHHhhcCCCeEEEEeCC
Confidence 467776653 2344 2344555554422 2222226889999999999999999864
No 336
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=49.67 E-value=92 Score=32.44 Aligned_cols=93 Identities=12% Similarity=0.085 Sum_probs=48.9
Q ss_pred CCEEEEeCCCC-cHHHHHHhhC-CcEEEeCCccchHHHHHHHHHHcCCCeEEEEecc--ccC----C-C-CCCCee----
Q 009069 219 IRTAIDTGCGV-ASWGAYLMSR-NILAVSFAPRDTHEAQVQFALERGVPALIGVMAS--IRL----P-Y-PSRAFD---- 284 (544)
Q Consensus 219 ~r~VLDIGCGt-G~~a~~La~~-~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~--~~L----P-f-pd~sFD---- 284 (544)
+.+||=+|+|. |..+..+++. ++.++-+ +.++...+++.+.|....+...+. ..+ . + ....+|
T Consensus 167 g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~---~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~t~~~g~d~~~d 243 (349)
T TIGR03201 167 GDLVIVIGAGGVGGYMVQTAKAMGAAVVAI---DIDPEKLEMMKGFGADLTLNPKDKSAREVKKLIKAFAKARGLRSTGW 243 (349)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEE---cCCHHHHHHHHHhCCceEecCccccHHHHHHHHHhhcccCCCCCCcC
Confidence 44899999853 5555555553 5443333 223345566666665332221110 000 0 0 112344
Q ss_pred EEEecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 285 MAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 285 lV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
+|+-.- .....+..+.+.|++||.+++.+.
T Consensus 244 ~v~d~~-------g~~~~~~~~~~~l~~~G~iv~~G~ 273 (349)
T TIGR03201 244 KIFECS-------GSKPGQESALSLLSHGGTLVVVGY 273 (349)
T ss_pred EEEECC-------CChHHHHHHHHHHhcCCeEEEECc
Confidence 454211 013567778899999999999864
No 337
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=49.55 E-value=1.2e+02 Score=30.79 Aligned_cols=88 Identities=18% Similarity=0.128 Sum_probs=48.4
Q ss_pred CCEEEEeCCC-CcHHHHHHhh-CCcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEecccccccc
Q 009069 219 IRTAIDTGCG-VASWGAYLMS-RNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWG 296 (544)
Q Consensus 219 ~r~VLDIGCG-tG~~a~~La~-~~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~sFDlV~~~~~l~h~~ 296 (544)
+.+||=.|+| .|..+..+++ .|+.++-++. .....+++++.|....+. .... ...+.+|+|+...
T Consensus 156 g~~vlV~g~g~vg~~~~q~a~~~G~~vi~~~~---~~~~~~~~~~~g~~~~~~---~~~~-~~~~~~d~vid~~------ 222 (319)
T cd08242 156 GDKVAVLGDGKLGLLIAQVLALTGPDVVLVGR---HSEKLALARRLGVETVLP---DEAE-SEGGGFDVVVEAT------ 222 (319)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEcC---CHHHHHHHHHcCCcEEeC---cccc-ccCCCCCEEEECC------
Confidence 3478877754 2233333333 3655444422 234555666555432221 1111 2445699998532
Q ss_pred cChHHHHHHHHHcccCCcEEEEEe
Q 009069 297 QYDGLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 297 ~d~~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
.....+..+.+.|+++|.++..+
T Consensus 223 -g~~~~~~~~~~~l~~~g~~v~~~ 245 (319)
T cd08242 223 -GSPSGLELALRLVRPRGTVVLKS 245 (319)
T ss_pred -CChHHHHHHHHHhhcCCEEEEEc
Confidence 12356788889999999999753
No 338
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=48.73 E-value=1.6e+02 Score=28.09 Aligned_cols=105 Identities=12% Similarity=0.020 Sum_probs=58.2
Q ss_pred HHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHH---hhCCcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccc---cCC
Q 009069 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYL---MSRNILAVSFAPRDTHEAQVQFALERGVPALIGVMASI---RLP 277 (544)
Q Consensus 204 ~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~L---a~~~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~---~LP 277 (544)
.++.|.+.+........+|+-|||=+-.....- ....+...|++. +++. -+.+ .|...|.. .+|
T Consensus 11 T~~~l~~~l~~~~~~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~--------RF~~-~~~~-~F~fyD~~~p~~~~ 80 (162)
T PF10237_consen 11 TAEFLARELLDGALDDTRIACLSTPSLYEALKKESKPRIQSFLLEYDR--------RFEQ-FGGD-EFVFYDYNEPEELP 80 (162)
T ss_pred HHHHHHHHHHHhcCCCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecc--------hHHh-cCCc-ceEECCCCChhhhh
Confidence 334444444332223358999999876655444 223677778833 2332 1222 34444432 222
Q ss_pred -CCCCCeeEEEecccccccccCh--HHHHHHHHHcccCCcEEEEEeC
Q 009069 278 -YPSRAFDMAHCSRCLIPWGQYD--GLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 278 -fpd~sFDlV~~~~~l~h~~~d~--~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
.-.++||+|++-. ++..+. ..+...+.-++|+++.+++..+
T Consensus 81 ~~l~~~~d~vv~DP---PFl~~ec~~k~a~ti~~L~k~~~kii~~Tg 124 (162)
T PF10237_consen 81 EELKGKFDVVVIDP---PFLSEECLTKTAETIRLLLKPGGKIILCTG 124 (162)
T ss_pred hhcCCCceEEEECC---CCCCHHHHHHHHHHHHHHhCccceEEEecH
Confidence 1157999999977 333322 3444556666789999998854
No 339
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=48.28 E-value=92 Score=32.83 Aligned_cols=93 Identities=13% Similarity=0.041 Sum_probs=51.0
Q ss_pred CCEEEEeCCC-CcHHHHHHhhC-Cc-EEEeCCccchHHHHHHHHHHcCCCeEEEEec-cc----cC-CCCCCCeeEEEec
Q 009069 219 IRTAIDTGCG-VASWGAYLMSR-NI-LAVSFAPRDTHEAQVQFALERGVPALIGVMA-SI----RL-PYPSRAFDMAHCS 289 (544)
Q Consensus 219 ~r~VLDIGCG-tG~~a~~La~~-~V-~~vdisp~dls~a~v~~A~ergv~~~~~v~d-~~----~L-Pfpd~sFDlV~~~ 289 (544)
+.+||=+|+| .|..+..+++. ++ .++-+ +.+....+++.+.|....+...+ .. .+ ....+.+|+|+-.
T Consensus 186 g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~---~~~~~~~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~d~vid~ 262 (368)
T TIGR02818 186 GDTVAVFGLGGIGLSVIQGARMAKASRIIAI---DINPAKFELAKKLGATDCVNPNDYDKPIQEVIVEITDGGVDYSFEC 262 (368)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEE---cCCHHHHHHHHHhCCCeEEcccccchhHHHHHHHHhCCCCCEEEEC
Confidence 3488888876 34555556553 54 33333 22345566776666543332111 00 00 0112358888743
Q ss_pred ccccccccChHHHHHHHHHcccCC-cEEEEEeC
Q 009069 290 RCLIPWGQYDGLYLIEVDRVLRPG-GYWILSGP 321 (544)
Q Consensus 290 ~~l~h~~~d~~~~L~Ei~RVLKPG-G~Lvis~p 321 (544)
-. ....+.+..+.|++| |.+++.+.
T Consensus 263 ~G-------~~~~~~~~~~~~~~~~G~~v~~g~ 288 (368)
T TIGR02818 263 IG-------NVNVMRAALECCHKGWGESIIIGV 288 (368)
T ss_pred CC-------CHHHHHHHHHHhhcCCCeEEEEec
Confidence 21 135678888999996 99988764
No 340
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=47.96 E-value=27 Score=37.86 Aligned_cols=55 Identities=20% Similarity=0.238 Sum_probs=41.2
Q ss_pred CeEEEEeccccC--CCCCCCeeEEEecccccccccCh--HHHHHHHHHcccCCcEEEEEe
Q 009069 265 PALIGVMASIRL--PYPSRAFDMAHCSRCLIPWGQYD--GLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 265 ~~~~~v~d~~~L--Pfpd~sFDlV~~~~~l~h~~~d~--~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
.+.+...+.... ..++++||.++.+..+ .|.++. ...++++.|.++|||.+++-.
T Consensus 276 rv~i~t~si~~~L~~~~~~s~~~~vL~D~~-Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rs 334 (380)
T PF11899_consen 276 RVRIHTDSIEEVLRRLPPGSFDRFVLSDHM-DWMDPEQLNEEWQELARTARPGARVLWRS 334 (380)
T ss_pred eEEEEeccHHHHHHhCCCCCeeEEEecchh-hhCCHHHHHHHHHHHHHHhCCCCEEEEee
Confidence 455555543332 1468999999998877 666544 688999999999999999975
No 341
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=47.79 E-value=76 Score=32.53 Aligned_cols=91 Identities=19% Similarity=0.161 Sum_probs=48.0
Q ss_pred CCEEEEeCCC-CcHHHHHHhhC-Cc-EEEeCCccchHHHHHHHHHHcCCCeEEEEec------cccCCCCCCCeeEEEec
Q 009069 219 IRTAIDTGCG-VASWGAYLMSR-NI-LAVSFAPRDTHEAQVQFALERGVPALIGVMA------SIRLPYPSRAFDMAHCS 289 (544)
Q Consensus 219 ~r~VLDIGCG-tG~~a~~La~~-~V-~~vdisp~dls~a~v~~A~ergv~~~~~v~d------~~~LPfpd~sFDlV~~~ 289 (544)
+.+||-.|+| .|..+..+++. ++ .++-++. .....+.+.+.+....+..-+ ...+ ...+.+|+|+..
T Consensus 168 ~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~---~~~~~~~~~~~g~~~vi~~~~~~~~~~i~~~-~~~~~~d~vld~ 243 (347)
T cd05278 168 GSTVAVIGAGPVGLCAVAGARLLGAARIIAVDS---NPERLDLAKEAGATDIINPKNGDIVEQILEL-TGGRGVDCVIEA 243 (347)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeC---CHHHHHHHHHhCCcEEEcCCcchHHHHHHHH-cCCCCCcEEEEc
Confidence 3478887765 35555555553 53 3333322 223334444444322111100 0011 133569999853
Q ss_pred ccccccccChHHHHHHHHHcccCCcEEEEEe
Q 009069 290 RCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 290 ~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
.. ....+.++.+.|+++|.++..+
T Consensus 244 ~g-------~~~~~~~~~~~l~~~G~~v~~g 267 (347)
T cd05278 244 VG-------FEETFEQAVKVVRPGGTIANVG 267 (347)
T ss_pred cC-------CHHHHHHHHHHhhcCCEEEEEc
Confidence 21 1357888999999999998775
No 342
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=47.05 E-value=81 Score=32.64 Aligned_cols=93 Identities=11% Similarity=0.043 Sum_probs=48.1
Q ss_pred CCEEEEeCCCC-cHHHHHHhhC-CcE-EEeCCccchHHHHHHHHHHcCCCeEEEEecc--ccC--CCCCCCee-EEEecc
Q 009069 219 IRTAIDTGCGV-ASWGAYLMSR-NIL-AVSFAPRDTHEAQVQFALERGVPALIGVMAS--IRL--PYPSRAFD-MAHCSR 290 (544)
Q Consensus 219 ~r~VLDIGCGt-G~~a~~La~~-~V~-~vdisp~dls~a~v~~A~ergv~~~~~v~d~--~~L--Pfpd~sFD-lV~~~~ 290 (544)
+.+||=.|+|. |..+..+++. ++. ++-++ .++...+++++.|....+...+. ..+ -.....+| +|+-.-
T Consensus 161 g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~---~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~d~~v~d~~ 237 (347)
T PRK10309 161 GKNVIIIGAGTIGLLAIQCAVALGAKSVTAID---INSEKLALAKSLGAMQTFNSREMSAPQIQSVLRELRFDQLILETA 237 (347)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEC---CCHHHHHHHHHcCCceEecCcccCHHHHHHHhcCCCCCeEEEECC
Confidence 34788888753 4444455543 442 22221 12344455655554322211100 000 01223577 655321
Q ss_pred cccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 291 CLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 291 ~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
. ....+.+..+.|++||.+++.+.
T Consensus 238 G-------~~~~~~~~~~~l~~~G~iv~~G~ 261 (347)
T PRK10309 238 G-------VPQTVELAIEIAGPRAQLALVGT 261 (347)
T ss_pred C-------CHHHHHHHHHHhhcCCEEEEEcc
Confidence 1 14578889999999999999874
No 343
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=46.30 E-value=96 Score=32.54 Aligned_cols=92 Identities=16% Similarity=0.096 Sum_probs=48.7
Q ss_pred CEEEEeCCC-CcHHHHHHhhC-Cc-EEEeCCccchHHHHHHHHHHcCCCeEEEEecc-c----cC-CCCCCCeeEEEecc
Q 009069 220 RTAIDTGCG-VASWGAYLMSR-NI-LAVSFAPRDTHEAQVQFALERGVPALIGVMAS-I----RL-PYPSRAFDMAHCSR 290 (544)
Q Consensus 220 r~VLDIGCG-tG~~a~~La~~-~V-~~vdisp~dls~a~v~~A~ergv~~~~~v~d~-~----~L-Pfpd~sFDlV~~~~ 290 (544)
.+||=+|+| .|..+..+++. ++ .++-++. .....+++.+.|....+...+. . .+ ....+.+|+|+-.-
T Consensus 186 ~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~---~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~g~d~vid~~ 262 (365)
T cd08277 186 STVAVFGLGAVGLSAIMGAKIAGASRIIGVDI---NEDKFEKAKEFGATDFINPKDSDKPVSEVIREMTGGGVDYSFECT 262 (365)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeC---CHHHHHHHHHcCCCcEeccccccchHHHHHHHHhCCCCCEEEECC
Confidence 478888875 23444445543 54 3333322 3345556655554322211100 0 00 01124689998422
Q ss_pred cccccccChHHHHHHHHHcccCC-cEEEEEeC
Q 009069 291 CLIPWGQYDGLYLIEVDRVLRPG-GYWILSGP 321 (544)
Q Consensus 291 ~l~h~~~d~~~~L~Ei~RVLKPG-G~Lvis~p 321 (544)
. ....+.++.+.|++| |.+++.+.
T Consensus 263 g-------~~~~~~~~~~~l~~~~G~~v~~g~ 287 (365)
T cd08277 263 G-------NADLMNEALESTKLGWGVSVVVGV 287 (365)
T ss_pred C-------ChHHHHHHHHhcccCCCEEEEEcC
Confidence 1 135778889999986 99998764
No 344
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=46.14 E-value=1.1e+02 Score=32.15 Aligned_cols=93 Identities=12% Similarity=0.031 Sum_probs=49.7
Q ss_pred CCEEEEeCCC-CcHHHHHHhhC-Cc-EEEeCCccchHHHHHHHHHHcCCCeEEEEeccc-cC-----CCCCCCeeEEEec
Q 009069 219 IRTAIDTGCG-VASWGAYLMSR-NI-LAVSFAPRDTHEAQVQFALERGVPALIGVMASI-RL-----PYPSRAFDMAHCS 289 (544)
Q Consensus 219 ~r~VLDIGCG-tG~~a~~La~~-~V-~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~-~L-----Pfpd~sFDlV~~~ 289 (544)
+.+||=+|+| .|.++..+++. +. .++-+ +.+....+++.+.|....+...+.. .. ....+.+|+|+-.
T Consensus 187 g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~---~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~v~~~~~~g~d~vid~ 263 (368)
T cd08300 187 GSTVAVFGLGAVGLAVIQGAKAAGASRIIGI---DINPDKFELAKKFGATDCVNPKDHDKPIQQVLVEMTDGGVDYTFEC 263 (368)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEE---eCCHHHHHHHHHcCCCEEEcccccchHHHHHHHHHhCCCCcEEEEC
Confidence 3478888875 34555555543 44 23333 2233455566665653322211100 00 0112368998853
Q ss_pred ccccccccChHHHHHHHHHcccCC-cEEEEEeC
Q 009069 290 RCLIPWGQYDGLYLIEVDRVLRPG-GYWILSGP 321 (544)
Q Consensus 290 ~~l~h~~~d~~~~L~Ei~RVLKPG-G~Lvis~p 321 (544)
-. ....+.+..+.|++| |.+++.+.
T Consensus 264 ~g-------~~~~~~~a~~~l~~~~G~~v~~g~ 289 (368)
T cd08300 264 IG-------NVKVMRAALEACHKGWGTSVIIGV 289 (368)
T ss_pred CC-------ChHHHHHHHHhhccCCCeEEEEcc
Confidence 21 135778889999997 99998764
No 345
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=45.76 E-value=1.5e+02 Score=30.20 Aligned_cols=85 Identities=21% Similarity=0.203 Sum_probs=46.3
Q ss_pred EEEEeCCCC-cHHHHHHhh-CCcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEecccccccccC
Q 009069 221 TAIDTGCGV-ASWGAYLMS-RNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQY 298 (544)
Q Consensus 221 ~VLDIGCGt-G~~a~~La~-~~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~sFDlV~~~~~l~h~~~d 298 (544)
+||=.|+|. |..+..+++ .++.++-++.. ....+++.+.|....+. .... +++.+|+++... .
T Consensus 170 ~vlV~g~g~vg~~~~~la~~~g~~v~~~~~~---~~~~~~~~~~g~~~~~~---~~~~--~~~~vD~vi~~~------~- 234 (329)
T cd08298 170 RLGLYGFGASAHLALQIARYQGAEVFAFTRS---GEHQELARELGADWAGD---SDDL--PPEPLDAAIIFA------P- 234 (329)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCeEEEEcCC---hHHHHHHHHhCCcEEec---cCcc--CCCcccEEEEcC------C-
Confidence 666677652 233333333 36555444332 23445555555422221 1111 344688876421 1
Q ss_pred hHHHHHHHHHcccCCcEEEEEe
Q 009069 299 DGLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 299 ~~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
....+.++.+.|+++|.+++.+
T Consensus 235 ~~~~~~~~~~~l~~~G~~v~~g 256 (329)
T cd08298 235 VGALVPAALRAVKKGGRVVLAG 256 (329)
T ss_pred cHHHHHHHHHHhhcCCEEEEEc
Confidence 1357899999999999999865
No 346
>PF13051 DUF3912: Protein of unknown function (DUF3912)
Probab=45.46 E-value=4.7 Score=31.71 Aligned_cols=10 Identities=20% Similarity=0.870 Sum_probs=8.1
Q ss_pred ccccccccCC
Q 009069 523 IGTYQNWYVF 532 (544)
Q Consensus 523 ig~~hdwce~ 532 (544)
.|.+|.|||.
T Consensus 57 vgqfh~wceq 66 (68)
T PF13051_consen 57 VGQFHEWCEQ 66 (68)
T ss_pred HHHHHHHHhh
Confidence 4789999984
No 347
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=43.91 E-value=1.2e+02 Score=31.18 Aligned_cols=91 Identities=20% Similarity=0.194 Sum_probs=48.7
Q ss_pred CEEEEeCCCC-cHHHHHHhhC-CcE-EEeCCccchHHHHHHHHHHcCCCeEEEEecc---------ccCCCCCCCeeEEE
Q 009069 220 RTAIDTGCGV-ASWGAYLMSR-NIL-AVSFAPRDTHEAQVQFALERGVPALIGVMAS---------IRLPYPSRAFDMAH 287 (544)
Q Consensus 220 r~VLDIGCGt-G~~a~~La~~-~V~-~vdisp~dls~a~v~~A~ergv~~~~~v~d~---------~~LPfpd~sFDlV~ 287 (544)
.+||-.|+|. |..+..+++. ++. ++-++.. +...+++.+.+....+..-+. ..+ .....||+|+
T Consensus 164 ~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~---~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~~~-~~~~~~d~vl 239 (343)
T cd05285 164 DTVLVFGAGPIGLLTAAVAKAFGATKVVVTDID---PSRLEFAKELGATHTVNVRTEDTPESAEKIAEL-LGGKGPDVVI 239 (343)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCcEEEEECCC---HHHHHHHHHcCCcEEeccccccchhHHHHHHHH-hCCCCCCEEE
Confidence 3777777653 5555556654 543 3333221 233344444443322211110 111 2345699998
Q ss_pred ecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 288 CSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 288 ~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
-... ....+.++.+.|+++|.++..+.
T Consensus 240 d~~g-------~~~~~~~~~~~l~~~G~~v~~g~ 266 (343)
T cd05285 240 ECTG-------AESCIQTAIYATRPGGTVVLVGM 266 (343)
T ss_pred ECCC-------CHHHHHHHHHHhhcCCEEEEEcc
Confidence 5321 13478889999999999987753
No 348
>PF14740 DUF4471: Domain of unknown function (DUF4471)
Probab=43.60 E-value=40 Score=35.22 Aligned_cols=66 Identities=15% Similarity=0.273 Sum_probs=45.7
Q ss_pred CCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeCCCCccccccCCCcchhhhHhhhhhHHHHHHhhcceee
Q 009069 280 SRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKL 358 (544)
Q Consensus 280 d~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~pp~~w~~~~~~w~~t~e~L~~~~~~ie~la~~l~w~~v 358 (544)
.+-||+|+.+....|+.. .++.++++|||.|++...- +.. .-..|.++.-.+++.++++..+|+..
T Consensus 220 ~~~Fd~ifvs~s~vh~L~------p~l~~~~a~~A~LvvEtaK--fmv-----dLrKEq~~~F~~kv~eLA~~aG~~p~ 285 (289)
T PF14740_consen 220 QNFFDLIFVSCSMVHFLK------PELFQALAPDAVLVVETAK--FMV-----DLRKEQLQEFVKKVKELAKAAGFKPV 285 (289)
T ss_pred cCCCCEEEEhhhhHhhcc------hHHHHHhCCCCEEEEEcch--hhe-----eCCHHHHHHHHHHHHHHHHHCCCccc
Confidence 467999997766555554 2378899999999998641 000 02345555556789999999999754
No 349
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=42.58 E-value=51 Score=35.81 Aligned_cols=30 Identities=17% Similarity=0.310 Sum_probs=23.4
Q ss_pred CCEEEEeCCCCcHHHHHHhhC-CcEEEeCCc
Q 009069 219 IRTAIDTGCGVASWGAYLMSR-NILAVSFAP 248 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~-~V~~vdisp 248 (544)
...|+|+|.|.|.++..|.=. ++.++.|+.
T Consensus 154 i~~vvD~GaG~G~LSr~lSl~y~lsV~aIeg 184 (476)
T KOG2651|consen 154 IDQVVDVGAGQGHLSRFLSLGYGLSVKAIEG 184 (476)
T ss_pred CCeeEEcCCCchHHHHHHhhccCceEEEecc
Confidence 347999999999999998654 666666644
No 350
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=42.41 E-value=2.2e+02 Score=29.60 Aligned_cols=92 Identities=18% Similarity=0.205 Sum_probs=48.9
Q ss_pred CCEEEEeCCC-CcHHHHHHhhC-Cc-EEEeCCccchHHHHHHHHHHcCCCeEEEEeccccC--------C-CCCCCeeEE
Q 009069 219 IRTAIDTGCG-VASWGAYLMSR-NI-LAVSFAPRDTHEAQVQFALERGVPALIGVMASIRL--------P-YPSRAFDMA 286 (544)
Q Consensus 219 ~r~VLDIGCG-tG~~a~~La~~-~V-~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~L--------P-fpd~sFDlV 286 (544)
+.+||=.|+| .|..+..+++. ++ .++-++. .+...+++.+.+....+. ...... . ...+.+|+|
T Consensus 178 g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~---~~~~~~~~~~~g~~~vi~-~~~~~~~~~~~~i~~~~~~~~~d~v 253 (361)
T cd08231 178 GDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDG---SPERLELAREFGADATID-IDELPDPQRRAIVRDITGGRGADVV 253 (361)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC---CHHHHHHHHHcCCCeEEc-CcccccHHHHHHHHHHhCCCCCcEE
Confidence 3477777764 23444444443 66 5444433 233444555555432221 111000 0 123468999
Q ss_pred EecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 287 HCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 287 ~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
+.... ....+.+..+.|+++|.++..+.
T Consensus 254 id~~g-------~~~~~~~~~~~l~~~G~~v~~g~ 281 (361)
T cd08231 254 IEASG-------HPAAVPEGLELLRRGGTYVLVGS 281 (361)
T ss_pred EECCC-------ChHHHHHHHHHhccCCEEEEEcC
Confidence 85321 13567888999999999998764
No 351
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=41.44 E-value=68 Score=35.19 Aligned_cols=97 Identities=15% Similarity=0.132 Sum_probs=54.8
Q ss_pred HHHHHHHhcccCCCCCEEEEeCCCC-cHHHHHHhh-CC--cEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCC
Q 009069 205 IDDIGKLINLKDGSIRTAIDTGCGV-ASWGAYLMS-RN--ILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPS 280 (544)
Q Consensus 205 i~~L~~lL~l~~g~~r~VLDIGCGt-G~~a~~La~-~~--V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd 280 (544)
++.+.+.... ...+++|+=+|+|. |...+.+++ .| |+++|.++ .....|...|.... ..+ +.+
T Consensus 189 ~~~i~r~t~~-~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~-----~R~~~A~~~G~~~~--~~~-e~v---- 255 (413)
T cd00401 189 IDGIKRATDV-MIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDP-----ICALQAAMEGYEVM--TME-EAV---- 255 (413)
T ss_pred HHHHHHhcCC-CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCh-----hhHHHHHhcCCEEc--cHH-HHH----
Confidence 3445544432 12355899999995 555554444 34 55566643 33445655564221 111 111
Q ss_pred CCeeEEEecccccccccChHHHHH-HHHHcccCCcEEEEEeC
Q 009069 281 RAFDMAHCSRCLIPWGQYDGLYLI-EVDRVLRPGGYWILSGP 321 (544)
Q Consensus 281 ~sFDlV~~~~~l~h~~~d~~~~L~-Ei~RVLKPGG~Lvis~p 321 (544)
..+|+|+..-. ....+. +..+.+|+||.++..+.
T Consensus 256 ~~aDVVI~atG-------~~~~i~~~~l~~mk~GgilvnvG~ 290 (413)
T cd00401 256 KEGDIFVTTTG-------NKDIITGEHFEQMKDGAIVCNIGH 290 (413)
T ss_pred cCCCEEEECCC-------CHHHHHHHHHhcCCCCcEEEEeCC
Confidence 24799986431 133444 45899999999999874
No 352
>PTZ00357 methyltransferase; Provisional
Probab=40.84 E-value=1.2e+02 Score=35.52 Aligned_cols=94 Identities=15% Similarity=0.122 Sum_probs=54.2
Q ss_pred EEEEeCCCCcHHHHHHhhC--------CcEEEeCCccchHHHHHHHHHH-c--------CCCeEEEEeccccCCCC----
Q 009069 221 TAIDTGCGVASWGAYLMSR--------NILAVSFAPRDTHEAQVQFALE-R--------GVPALIGVMASIRLPYP---- 279 (544)
Q Consensus 221 ~VLDIGCGtG~~a~~La~~--------~V~~vdisp~dls~a~v~~A~e-r--------gv~~~~~v~d~~~LPfp---- 279 (544)
.|+=+|+|-|-+....++. .+.+++=.+....-...+.... . |-.+.++..|...+..+
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~ 782 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG 782 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence 5899999999765554432 2344444332221112221111 1 12366777776665322
Q ss_pred -------CCCeeEEEecccccccccCh--HHHHHHHHHcccC----CcE
Q 009069 280 -------SRAFDMAHCSRCLIPWGQYD--GLYLIEVDRVLRP----GGY 315 (544)
Q Consensus 280 -------d~sFDlV~~~~~l~h~~~d~--~~~L~Ei~RVLKP----GG~ 315 (544)
-+.+|+|++-. |--|.++. .+.|..+.+.||+ +|.
T Consensus 783 s~~~P~~~gKaDIVVSEL-LGSFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 783 SLTLPADFGLCDLIVSEL-LGSLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred cccccccccccceehHhh-hcccccccCCHHHHHHHHHhhhhhcccccc
Confidence 23799999843 44555554 6889999999987 776
No 353
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=40.66 E-value=1.6e+02 Score=30.22 Aligned_cols=91 Identities=18% Similarity=0.183 Sum_probs=49.0
Q ss_pred CEEEEeCCCC-cHHHHHHhhC-CcE-EEeCCccchHHHHHHHHHHcCCCeEEEEecc-----ccCCCCCCCeeEEEeccc
Q 009069 220 RTAIDTGCGV-ASWGAYLMSR-NIL-AVSFAPRDTHEAQVQFALERGVPALIGVMAS-----IRLPYPSRAFDMAHCSRC 291 (544)
Q Consensus 220 r~VLDIGCGt-G~~a~~La~~-~V~-~vdisp~dls~a~v~~A~ergv~~~~~v~d~-----~~LPfpd~sFDlV~~~~~ 291 (544)
.+||-.|+|. |..+..+++. ++. ++-++.. ....++..+.+....+...+. ..+ .....||+|+...
T Consensus 161 ~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~---~~~~~~l~~~g~~~~~~~~~~~~~~~~~~-~~~~~~d~vld~~- 235 (343)
T cd08236 161 DTVVVIGAGTIGLLAIQWLKILGAKRVIAVDID---DEKLAVARELGADDTINPKEEDVEKVREL-TEGRGADLVIEAA- 235 (343)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC---HHHHHHHHHcCCCEEecCccccHHHHHHH-hCCCCCCEEEECC-
Confidence 4788888654 5555555553 543 4444322 233334444443211111000 011 1234599998532
Q ss_pred ccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 292 LIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 292 l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
.....+..+.+.|+++|.++..+.
T Consensus 236 ------g~~~~~~~~~~~l~~~G~~v~~g~ 259 (343)
T cd08236 236 ------GSPATIEQALALARPGGKVVLVGI 259 (343)
T ss_pred ------CCHHHHHHHHHHhhcCCEEEEEcc
Confidence 124577889999999999988764
No 354
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=40.38 E-value=92 Score=34.56 Aligned_cols=44 Identities=11% Similarity=0.170 Sum_probs=28.5
Q ss_pred EEEEeCCCCcHHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCC
Q 009069 221 TAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERGVP 265 (544)
Q Consensus 221 ~VLDIGCGtG~~a~~La~~---~V~~vdisp~dls~a~v~~A~ergv~ 265 (544)
-|||||.|||.+.....+. .++++++-..|. ..++....++|..
T Consensus 69 ~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~-d~arkI~~kng~S 115 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMV-DLARKIMHKNGMS 115 (636)
T ss_pred EEEEccCCccHHHHHHHHhcCCeEEeehhhchHH-HHHHHHHhcCCCc
Confidence 5899999999988777766 356666544344 3444444455543
No 355
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=40.03 E-value=1.4e+02 Score=30.90 Aligned_cols=91 Identities=16% Similarity=0.157 Sum_probs=49.3
Q ss_pred CCEEEEeCCC-CcHHHHHHhhC-Cc-EEEeCCccchHHHHHHHHHHcCCCeEEEEecc------ccCCCCCCCeeEEEec
Q 009069 219 IRTAIDTGCG-VASWGAYLMSR-NI-LAVSFAPRDTHEAQVQFALERGVPALIGVMAS------IRLPYPSRAFDMAHCS 289 (544)
Q Consensus 219 ~r~VLDIGCG-tG~~a~~La~~-~V-~~vdisp~dls~a~v~~A~ergv~~~~~v~d~------~~LPfpd~sFDlV~~~ 289 (544)
+.+||=.|+| .|..+..+++. ++ .++-+ +..+...+.+.+-|....+...+. ..+ .....+|+|+..
T Consensus 167 g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~---~~~~~~~~~~~~~g~~~~v~~~~~~~~~~i~~~-~~~~~~d~vld~ 242 (351)
T cd08285 167 GDTVAVFGIGPVGLMAVAGARLRGAGRIIAV---GSRPNRVELAKEYGATDIVDYKNGDVVEQILKL-TGGKGVDAVIIA 242 (351)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEE---eCCHHHHHHHHHcCCceEecCCCCCHHHHHHHH-hCCCCCcEEEEC
Confidence 3478888876 34555555554 44 23333 122334455555554322211100 011 123468999853
Q ss_pred ccccccccChHHHHHHHHHcccCCcEEEEEe
Q 009069 290 RCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 290 ~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
.. ....+.++.+.|+++|.++..+
T Consensus 243 ~g-------~~~~~~~~~~~l~~~G~~v~~g 266 (351)
T cd08285 243 GG-------GQDTFEQALKVLKPGGTISNVN 266 (351)
T ss_pred CC-------CHHHHHHHHHHhhcCCEEEEec
Confidence 21 1357889999999999998765
No 356
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=39.75 E-value=1.6e+02 Score=29.37 Aligned_cols=91 Identities=19% Similarity=0.095 Sum_probs=51.5
Q ss_pred CCEEEEeCC--CCcHHHHHHhhC-CcEEEeCCccchHHHHHHHHHHcCCCeEEEEe-cc-cc-CCCCCCCeeEEEecccc
Q 009069 219 IRTAIDTGC--GVASWGAYLMSR-NILAVSFAPRDTHEAQVQFALERGVPALIGVM-AS-IR-LPYPSRAFDMAHCSRCL 292 (544)
Q Consensus 219 ~r~VLDIGC--GtG~~a~~La~~-~V~~vdisp~dls~a~v~~A~ergv~~~~~v~-d~-~~-LPfpd~sFDlV~~~~~l 292 (544)
+.+||=.|+ +.|..+..+++. ++.++-++.. +...+++.+.+....+... +. .. ..+ .+.+|+|+...
T Consensus 143 g~~vlV~ga~g~~g~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~~~i~~~-~~~~d~vl~~~-- 216 (320)
T cd08243 143 GDTLLIRGGTSSVGLAALKLAKALGATVTATTRS---PERAALLKELGADEVVIDDGAIAEQLRAA-PGGFDKVLELV-- 216 (320)
T ss_pred CCEEEEEcCCChHHHHHHHHHHHcCCEEEEEeCC---HHHHHHHHhcCCcEEEecCccHHHHHHHh-CCCceEEEECC--
Confidence 347888886 355666666654 5554444222 2334555555653322110 00 00 012 45699998532
Q ss_pred cccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 293 IPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 293 ~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
....+.++.+.|+++|.++..+.
T Consensus 217 ------~~~~~~~~~~~l~~~g~~v~~g~ 239 (320)
T cd08243 217 ------GTATLKDSLRHLRPGGIVCMTGL 239 (320)
T ss_pred ------ChHHHHHHHHHhccCCEEEEEcc
Confidence 13568888999999999988764
No 357
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=38.93 E-value=2.1e+02 Score=32.00 Aligned_cols=117 Identities=11% Similarity=0.143 Sum_probs=58.8
Q ss_pred HHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC--------CcEEEeCCccchHHHHHHHHHHcCCC---eEEEEec
Q 009069 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--------NILAVSFAPRDTHEAQVQFALERGVP---ALIGVMA 272 (544)
Q Consensus 204 ~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--------~V~~vdisp~dls~a~v~~A~ergv~---~~~~v~d 272 (544)
.++.+.+++......+..+.|.-||+|.+.....+. .+++-+..+.+..-+...... ++.. ......|
T Consensus 203 Iv~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l-~~~~~~t~~~~~~d 281 (501)
T TIGR00497 203 ISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMIL-HNIDYANFNIINAD 281 (501)
T ss_pred HHHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHH-cCCCccccCcccCC
Confidence 344444444332223347999999999987654321 133444433322222222111 2221 1222233
Q ss_pred cccCC-C-CCCCeeEEEecccccc-c-----------------------ccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 273 SIRLP-Y-PSRAFDMAHCSRCLIP-W-----------------------GQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 273 ~~~LP-f-pd~sFDlV~~~~~l~h-~-----------------------~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
....| + ....||.|+++.-+.. | ......++.-+..+|++||...+.-+
T Consensus 282 tl~~~d~~~~~~~D~v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~aiI~~ 356 (501)
T TIGR00497 282 TLTTKEWENENGFEVVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAIVCF 356 (501)
T ss_pred cCCCccccccccCCEEeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEEEec
Confidence 32222 1 2356888887542211 1 11124678888999999998777755
No 358
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=38.43 E-value=84 Score=33.47 Aligned_cols=92 Identities=12% Similarity=0.090 Sum_probs=48.1
Q ss_pred CCEEEEeCCC-CcHHHHHHhhC-Cc--EEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEecccccc
Q 009069 219 IRTAIDTGCG-VASWGAYLMSR-NI--LAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIP 294 (544)
Q Consensus 219 ~r~VLDIGCG-tG~~a~~La~~-~V--~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~sFDlV~~~~~l~h 294 (544)
+.+||=.|+| .|..+..+++. +. .+++.+. +...+++++.|....+...+...+.-..+.+|+|+-.-.
T Consensus 179 g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~----~~~~~~a~~lGa~~~i~~~~~~~v~~~~~~~D~vid~~G--- 251 (375)
T PLN02178 179 GKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSS----EKEREAIDRLGADSFLVTTDSQKMKEAVGTMDFIIDTVS--- 251 (375)
T ss_pred CCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCCh----HHhHHHHHhCCCcEEEcCcCHHHHHHhhCCCcEEEECCC---
Confidence 4478888875 34555555554 54 3343321 222345555554322211110000000024788875321
Q ss_pred cccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 295 WGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 295 ~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
....+.+..+.|++||.++..+.
T Consensus 252 ----~~~~~~~~~~~l~~~G~iv~vG~ 274 (375)
T PLN02178 252 ----AEHALLPLFSLLKVSGKLVALGL 274 (375)
T ss_pred ----cHHHHHHHHHhhcCCCEEEEEcc
Confidence 13467888899999999998764
No 359
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=37.98 E-value=16 Score=38.30 Aligned_cols=126 Identities=21% Similarity=0.224 Sum_probs=73.4
Q ss_pred ceeeec--CCceecCCCCCCCcccHHHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHH-HHhhC---CcEEEeCCccchH
Q 009069 179 NWVRFQ--GDRFSFPGGGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGA-YLMSR---NILAVSFAPRDTH 252 (544)
Q Consensus 179 ~w~~~~--ge~~~F~g~g~~F~~ga~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~-~La~~---~V~~vdisp~dls 252 (544)
.|++.. |=.+.|...-+||..|-..-..++..+... +..|.|+=+|.|.|+. .|... .|.+.+..|-.+
T Consensus 157 gWV~~v~NGI~~~~d~t~~MFS~GN~~EK~Rv~~~sc~----~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~sv- 231 (351)
T KOG1227|consen 157 GWVKHVQNGITQIWDPTKTMFSRGNIKEKKRVLNTSCD----GEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSV- 231 (351)
T ss_pred cceeehhcCeEEEechhhhhhhcCcHHHHHHhhhcccc----cchhhhhhcccceEEeehhhccCccEEEEEecCHHHH-
Confidence 466553 444556555677866654444444443322 2489999999999988 66554 578888877555
Q ss_pred HHHHHHHHHcCCC--eEEEEeccccCCCCCCCeeEEEecccccccccChHHHHHHHHHcccCCcE
Q 009069 253 EAQVQFALERGVP--ALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGY 315 (544)
Q Consensus 253 ~a~v~~A~ergv~--~~~~v~d~~~LPfpd~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~ 315 (544)
++..+-+..+++. ..+.. ...+.+-++...|-|.... .+- -++-...+.++|||.|-
T Consensus 232 EaLrR~~~~N~V~~r~~i~~-gd~R~~~~~~~AdrVnLGL--lPS---se~~W~~A~k~Lk~egg 290 (351)
T KOG1227|consen 232 EALRRNAEANNVMDRCRITE-GDNRNPKPRLRADRVNLGL--LPS---SEQGWPTAIKALKPEGG 290 (351)
T ss_pred HHHHHHHHhcchHHHHHhhh-ccccccCccccchheeecc--ccc---cccchHHHHHHhhhcCC
Confidence 3444444444332 11222 2445566777788877522 222 24556667888888554
No 360
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=37.94 E-value=1.6e+02 Score=30.84 Aligned_cols=93 Identities=15% Similarity=0.050 Sum_probs=49.4
Q ss_pred CCEEEEeCCC-CcHHHHHHhhC-Cc-EEEeCCccchHHHHHHHHHHcCCCeEEEEecc-ccC-----CCCCCCeeEEEec
Q 009069 219 IRTAIDTGCG-VASWGAYLMSR-NI-LAVSFAPRDTHEAQVQFALERGVPALIGVMAS-IRL-----PYPSRAFDMAHCS 289 (544)
Q Consensus 219 ~r~VLDIGCG-tG~~a~~La~~-~V-~~vdisp~dls~a~v~~A~ergv~~~~~v~d~-~~L-----Pfpd~sFDlV~~~ 289 (544)
+.+||=.|+| .|.++..+++. ++ .++-++. .....+++++-|....+...+. ..+ ....+.+|+|+-.
T Consensus 188 g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~---~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~v~~~~~~~~d~vid~ 264 (369)
T cd08301 188 GSTVAIFGLGAVGLAVAEGARIRGASRIIGVDL---NPSKFEQAKKFGVTEFVNPKDHDKPVQEVIAEMTGGGVDYSFEC 264 (369)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC---CHHHHHHHHHcCCceEEcccccchhHHHHHHHHhCCCCCEEEEC
Confidence 3488888865 23444555543 54 3333322 2345566666564322211110 000 0122358888743
Q ss_pred ccccccccChHHHHHHHHHcccCC-cEEEEEeC
Q 009069 290 RCLIPWGQYDGLYLIEVDRVLRPG-GYWILSGP 321 (544)
Q Consensus 290 ~~l~h~~~d~~~~L~Ei~RVLKPG-G~Lvis~p 321 (544)
.. ....+..+.+.+++| |.+++.+.
T Consensus 265 ~G-------~~~~~~~~~~~~~~~~g~~v~~g~ 290 (369)
T cd08301 265 TG-------NIDAMISAFECVHDGWGVTVLLGV 290 (369)
T ss_pred CC-------ChHHHHHHHHHhhcCCCEEEEECc
Confidence 21 135677788999996 99998764
No 361
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=36.60 E-value=1.4e+02 Score=32.64 Aligned_cols=122 Identities=11% Similarity=0.021 Sum_probs=64.6
Q ss_pred CCCcccHHHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC-------CcEEEeCCccchHHHHHHHHHH----cC
Q 009069 195 TMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-------NILAVSFAPRDTHEAQVQFALE----RG 263 (544)
Q Consensus 195 ~~F~~ga~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~-------~V~~vdisp~dls~a~v~~A~e----rg 263 (544)
+.+++-..+.+..+.+-+.+++++ ...|+|.|.|.....++.. |+..++.-. +....+.++-.. -|
T Consensus 171 ~~YGE~~~~ql~si~dEl~~g~~D--~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS-~~a~~~~~~~kk~~k~fG 247 (419)
T KOG3924|consen 171 ETYGETQLEQLRSIVDELKLGPAD--VFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPS-QCAELNKEEFKKLMKHFG 247 (419)
T ss_pred cchhhhhHHHHHHHHHHhccCCCC--cccCCCcccchhhHHHHHhhccccccceeeecCcH-HHHHHHHHHHHHHHHHhC
Confidence 345555555555566666666655 7899999999766665542 555555421 222222222111 02
Q ss_pred ---CCeEEEEeccccCC---CCCCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 264 ---VPALIGVMASIRLP---YPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 264 ---v~~~~~v~d~~~LP---fpd~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
.......++...-. .-...-++|+.+.+. +.++...-+.++..-+++|-.++=..+
T Consensus 248 k~~~~~~~i~gsf~~~~~v~eI~~eatvi~vNN~~--Fdp~L~lr~~eil~~ck~gtrIiS~~~ 309 (419)
T KOG3924|consen 248 KKPNKIETIHGSFLDPKRVTEIQTEATVIFVNNVA--FDPELKLRSKEILQKCKDGTRIISSKP 309 (419)
T ss_pred CCcCceeecccccCCHHHHHHHhhcceEEEEeccc--CCHHHHHhhHHHHhhCCCcceEecccc
Confidence 12333332221100 113356888887755 343334445688888888888766544
No 362
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=36.14 E-value=1.7e+02 Score=30.03 Aligned_cols=92 Identities=16% Similarity=0.208 Sum_probs=48.7
Q ss_pred CCEEEEeCCCC-cHHHHHHhhC-Cc-EEEeCCccchHHHHHHHHHHcCCCeEEEEeccccC-----CCCCCCeeEEEecc
Q 009069 219 IRTAIDTGCGV-ASWGAYLMSR-NI-LAVSFAPRDTHEAQVQFALERGVPALIGVMASIRL-----PYPSRAFDMAHCSR 290 (544)
Q Consensus 219 ~r~VLDIGCGt-G~~a~~La~~-~V-~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~L-----Pfpd~sFDlV~~~~ 290 (544)
+.+||-.|+|. |..+..+++. ++ .++-++. ++.....+.+.+....+. ...... -...+.+|+|+...
T Consensus 164 g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~---~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~vd~vld~~ 239 (341)
T cd05281 164 GKSVLITGCGPIGLMAIAVAKAAGASLVIASDP---NPYRLELAKKMGADVVIN-PREEDVVEVKSVTDGTGVDVVLEMS 239 (341)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEECC---CHHHHHHHHHhCcceeeC-cccccHHHHHHHcCCCCCCEEEECC
Confidence 34677777652 4555555553 54 3333322 223334444445422221 111111 01235689998533
Q ss_pred cccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 291 CLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 291 ~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
. ....+.++.+.|+++|.++..+.
T Consensus 240 g-------~~~~~~~~~~~l~~~G~~v~~g~ 263 (341)
T cd05281 240 G-------NPKAIEQGLKALTPGGRVSILGL 263 (341)
T ss_pred C-------CHHHHHHHHHHhccCCEEEEEcc
Confidence 1 13567888999999999988754
No 363
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=36.02 E-value=2.5e+02 Score=30.11 Aligned_cols=98 Identities=17% Similarity=0.078 Sum_probs=51.4
Q ss_pred CEEEEeCCC-CcHHHHHHhhC-CcE-EEeCCccchHHHHHHHHHHcCCCeEEEEecccc----CC--CCCCCeeEEEecc
Q 009069 220 RTAIDTGCG-VASWGAYLMSR-NIL-AVSFAPRDTHEAQVQFALERGVPALIGVMASIR----LP--YPSRAFDMAHCSR 290 (544)
Q Consensus 220 r~VLDIGCG-tG~~a~~La~~-~V~-~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~----LP--fpd~sFDlV~~~~ 290 (544)
.+||=.|+| .|..+..+++. ++. ++-. +......+++++.|... +....... +. .....+|+|+-.-
T Consensus 187 ~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~---d~~~~r~~~a~~~Ga~~-v~~~~~~~~~~~v~~~~~~~g~Dvvid~~ 262 (393)
T TIGR02819 187 STVYIAGAGPVGLAAAASAQLLGAAVVIVG---DLNPARLAQARSFGCET-VDLSKDATLPEQIEQILGEPEVDCAVDCV 262 (393)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCceEEEe---CCCHHHHHHHHHcCCeE-EecCCcccHHHHHHHHcCCCCCcEEEECC
Confidence 366667775 34455555543 443 1211 22345667777777542 21110000 00 1234689998533
Q ss_pred cccc-------cccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 291 CLIP-------WGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 291 ~l~h-------~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
.... ...+....+.+..+++|+||.+++.+.
T Consensus 263 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~ 300 (393)
T TIGR02819 263 GFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGL 300 (393)
T ss_pred CCccccccccccccchHHHHHHHHHHhhCCCEEEEeee
Confidence 2100 001113578999999999999999875
No 364
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=34.84 E-value=2.6e+02 Score=28.84 Aligned_cols=93 Identities=17% Similarity=0.127 Sum_probs=48.4
Q ss_pred CCEEEEeCCC-CcHHHHHHhhC-Cc-EEEeCCccchHHHHHHHHHHcCCCeEEEEecc---ccC-C-CCCCCeeEEEecc
Q 009069 219 IRTAIDTGCG-VASWGAYLMSR-NI-LAVSFAPRDTHEAQVQFALERGVPALIGVMAS---IRL-P-YPSRAFDMAHCSR 290 (544)
Q Consensus 219 ~r~VLDIGCG-tG~~a~~La~~-~V-~~vdisp~dls~a~v~~A~ergv~~~~~v~d~---~~L-P-fpd~sFDlV~~~~ 290 (544)
+.+||=.|+| .|..+..+++. ++ .++-++. +....+++.+.|....+...+. ..+ . ...+.+|+|+-..
T Consensus 173 g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~---~~~~~~~~~~~ga~~~i~~~~~~~~~~l~~~~~~~~~d~vid~~ 249 (351)
T cd08233 173 GDTALVLGAGPIGLLTILALKAAGASKIIVSEP---SEARRELAEELGATIVLDPTEVDVVAEVRKLTGGGGVDVSFDCA 249 (351)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECC---CHHHHHHHHHhCCCEEECCCccCHHHHHHHHhCCCCCCEEEECC
Confidence 3477777754 23444444443 55 3333322 2333445545454322211110 000 0 1234589998533
Q ss_pred cccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 291 CLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 291 ~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
. ....+.++.+.|++||.++..+.
T Consensus 250 g-------~~~~~~~~~~~l~~~G~~v~~g~ 273 (351)
T cd08233 250 G-------VQATLDTAIDALRPRGTAVNVAI 273 (351)
T ss_pred C-------CHHHHHHHHHhccCCCEEEEEcc
Confidence 1 13567889999999999998764
No 365
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=34.72 E-value=4.3e+02 Score=25.98 Aligned_cols=91 Identities=20% Similarity=0.128 Sum_probs=48.8
Q ss_pred CCEEEEeCCC--CcHHHHHHhhC-CcEEEeCCccchHHHHHHHHHHcCCCeEEEEec--c----ccCCCCCCCeeEEEec
Q 009069 219 IRTAIDTGCG--VASWGAYLMSR-NILAVSFAPRDTHEAQVQFALERGVPALIGVMA--S----IRLPYPSRAFDMAHCS 289 (544)
Q Consensus 219 ~r~VLDIGCG--tG~~a~~La~~-~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d--~----~~LPfpd~sFDlV~~~ 289 (544)
+.+||-.||. .|..+..++.. ++.++-++. +....+++.+.+....+.... . ..+ .....+|+++..
T Consensus 140 ~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~-~~~~~~d~v~~~ 215 (323)
T cd08241 140 GETVLVLGAAGGVGLAAVQLAKALGARVIAAAS---SEEKLALARALGADHVIDYRDPDLRERVKAL-TGGRGVDVVYDP 215 (323)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHhCCEEEEEeC---CHHHHHHHHHcCCceeeecCCccHHHHHHHH-cCCCCcEEEEEC
Confidence 4489999982 44444445443 554444422 223445555555432222111 0 001 123468988753
Q ss_pred ccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 290 RCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 290 ~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
.. ...+..+.+.++++|.++..+.
T Consensus 216 ~g--------~~~~~~~~~~~~~~g~~v~~~~ 239 (323)
T cd08241 216 VG--------GDVFEASLRSLAWGGRLLVIGF 239 (323)
T ss_pred cc--------HHHHHHHHHhhccCCEEEEEcc
Confidence 31 2456677889999999987653
No 366
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=34.58 E-value=1.9e+02 Score=30.26 Aligned_cols=91 Identities=16% Similarity=0.150 Sum_probs=49.0
Q ss_pred CCEEEEeCCCC-cHHHHHHhhC-Cc---EEEeCCccchHHHHHHHHHHcCCCeEEEEecc---ccC-CCCCCCeeEEEec
Q 009069 219 IRTAIDTGCGV-ASWGAYLMSR-NI---LAVSFAPRDTHEAQVQFALERGVPALIGVMAS---IRL-PYPSRAFDMAHCS 289 (544)
Q Consensus 219 ~r~VLDIGCGt-G~~a~~La~~-~V---~~vdisp~dls~a~v~~A~ergv~~~~~v~d~---~~L-Pfpd~sFDlV~~~ 289 (544)
+.+||=.|+|. |..+..+++. |+ .+++. ++...+++.+.+....+...+. ..+ ......+|+|+..
T Consensus 187 g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~-----~~~k~~~~~~~g~~~~i~~~~~~~~~~v~~~~~~~~d~vld~ 261 (365)
T cd08278 187 GSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDI-----VDSRLELAKELGATHVINPKEEDLVAAIREITGGGVDYALDT 261 (365)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeC-----CHHHHHHHHHcCCcEEecCCCcCHHHHHHHHhCCCCcEEEEC
Confidence 34788887652 4555555553 44 33333 2334455555554222211000 000 0113468999853
Q ss_pred ccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 290 RCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 290 ~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
.. ....+.++.+.|+++|.++..+.
T Consensus 262 ~g-------~~~~~~~~~~~l~~~G~~v~~g~ 286 (365)
T cd08278 262 TG-------VPAVIEQAVDALAPRGTLALVGA 286 (365)
T ss_pred CC-------CcHHHHHHHHHhccCCEEEEeCc
Confidence 21 13567899999999999998764
No 367
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=34.21 E-value=45 Score=26.56 Aligned_cols=19 Identities=21% Similarity=0.179 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHhhhhc
Q 009069 24 SITLVTILCTIFYLAGMWQ 42 (544)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~ 42 (544)
.+++++++|.++..||++-
T Consensus 38 ~v~~~~~~c~~S~~lG~~~ 56 (60)
T PF06072_consen 38 IVFAVVALCVLSGGLGALV 56 (60)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4556668999999999853
No 368
>PF07629 DUF1590: Protein of unknown function (DUF1590); InterPro: IPR011481 These hypothetical proteins in Rhodopirellula baltica have a conserved C-terminal region.
Probab=34.06 E-value=23 Score=24.01 Aligned_cols=20 Identities=30% Similarity=0.600 Sum_probs=16.5
Q ss_pred cCCCCCCCCCccccCCCCCC
Q 009069 129 RHCPEKTELLKCRVPAPHGY 148 (544)
Q Consensus 129 r~C~p~~~r~~Clvp~P~~y 148 (544)
-||||++-.+.-+.|.|+.-
T Consensus 5 a~~pppeislna~fptppaa 24 (32)
T PF07629_consen 5 ADCPPPEISLNARFPTPPAA 24 (32)
T ss_pred CCCCCCcceeccccCCChhh
Confidence 48999888899999988644
No 369
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=34.05 E-value=2.1e+02 Score=29.44 Aligned_cols=92 Identities=15% Similarity=0.178 Sum_probs=48.4
Q ss_pred CEEEEeCCC-CcHHHHHHhhC-CcE-EEeCCccchHHHHHHHHHHcCCCeEEEEe--cc-ccC--CCCCCCeeEEEeccc
Q 009069 220 RTAIDTGCG-VASWGAYLMSR-NIL-AVSFAPRDTHEAQVQFALERGVPALIGVM--AS-IRL--PYPSRAFDMAHCSRC 291 (544)
Q Consensus 220 r~VLDIGCG-tG~~a~~La~~-~V~-~vdisp~dls~a~v~~A~ergv~~~~~v~--d~-~~L--Pfpd~sFDlV~~~~~ 291 (544)
.+||-.|+| .|..+..+++. ++. ++-++. ++...+.+.+.+....+... +. ..+ ....+.||+|+....
T Consensus 163 ~~vlI~~~g~vg~~a~~la~~~G~~~v~~~~~---~~~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~~~~~d~vld~~g 239 (340)
T TIGR00692 163 KSVLVTGAGPIGLMAIAVAKASGAYPVIVSDP---NEYRLELAKKMGATYVVNPFKEDVVKEVADLTDGEGVDVFLEMSG 239 (340)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCcEEEEECC---CHHHHHHHHHhCCcEEEcccccCHHHHHHHhcCCCCCCEEEECCC
Confidence 366667764 34455555553 543 333322 23344455555543222110 00 000 113456899985321
Q ss_pred ccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 292 LIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 292 l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
....+.++.+.|+++|.++..+.
T Consensus 240 -------~~~~~~~~~~~l~~~g~~v~~g~ 262 (340)
T TIGR00692 240 -------APKALEQGLQAVTPGGRVSLLGL 262 (340)
T ss_pred -------CHHHHHHHHHhhcCCCEEEEEcc
Confidence 14578899999999999988764
No 370
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=33.81 E-value=2e+02 Score=30.15 Aligned_cols=33 Identities=21% Similarity=0.020 Sum_probs=23.9
Q ss_pred CeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 282 AFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 282 sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
.+|+|+-.-. ....+..+.+.|++||.++..+.
T Consensus 244 ~~D~vid~~g-------~~~~~~~~~~~l~~~G~iv~~G~ 276 (357)
T PLN02514 244 SLDYIIDTVP-------VFHPLEPYLSLLKLDGKLILMGV 276 (357)
T ss_pred CCcEEEECCC-------chHHHHHHHHHhccCCEEEEECC
Confidence 4788874321 13567888899999999998864
No 371
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=33.19 E-value=69 Score=29.09 Aligned_cols=73 Identities=12% Similarity=0.099 Sum_probs=41.7
Q ss_pred CeEEEEecccc-CCCCCCCeeEEEecccccccccCh----HHHHHHHHHcccCCcEEEEEeCCCCccccccCCCcchhhh
Q 009069 265 PALIGVMASIR-LPYPSRAFDMAHCSRCLIPWGQYD----GLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDL 339 (544)
Q Consensus 265 ~~~~~v~d~~~-LPfpd~sFDlV~~~~~l~h~~~d~----~~~L~Ei~RVLKPGG~Lvis~pp~~w~~~~~~w~~t~e~L 339 (544)
...+..+|+.. ++--+..||+|+--. +.+-. ++ ..++.++.|+++|||.|.--..
T Consensus 32 ~L~L~~gDa~~~l~~l~~~~Da~ylDg-FsP~~-nPelWs~e~~~~l~~~~~~~~~l~Tys~------------------ 91 (124)
T PF05430_consen 32 TLTLWFGDAREMLPQLDARFDAWYLDG-FSPAK-NPELWSEELFKKLARLSKPGGTLATYSS------------------ 91 (124)
T ss_dssp EEEEEES-HHHHHHHB-T-EEEEEE-S-S-TTT-SGGGSSHHHHHHHHHHEEEEEEEEES--------------------
T ss_pred EEEEEEcHHHHHHHhCcccCCEEEecC-CCCcC-CcccCCHHHHHHHHHHhCCCcEEEEeec------------------
Confidence 34445555422 222236799998643 21222 12 6899999999999998865321
Q ss_pred HhhhhhHHHHHHhhcceeeee
Q 009069 340 KSEQNGIETIARSLCWKKLIQ 360 (544)
Q Consensus 340 ~~~~~~ie~la~~l~w~~v~~ 360 (544)
...++......||.....
T Consensus 92 ---a~~Vr~~L~~aGF~v~~~ 109 (124)
T PF05430_consen 92 ---AGAVRRALQQAGFEVEKV 109 (124)
T ss_dssp ---BHHHHHHHHHCTEEEEEE
T ss_pred ---hHHHHHHHHHcCCEEEEc
Confidence 123666777888876543
No 372
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=32.90 E-value=2.4e+02 Score=29.39 Aligned_cols=91 Identities=16% Similarity=0.146 Sum_probs=48.1
Q ss_pred CEEEEeCCC-CcHHHHHHhhC-CcE-EEeCCccchHHHHHHHHHHcCCCeEEEEeccc----cC--CCCCCCeeEEEecc
Q 009069 220 RTAIDTGCG-VASWGAYLMSR-NIL-AVSFAPRDTHEAQVQFALERGVPALIGVMASI----RL--PYPSRAFDMAHCSR 290 (544)
Q Consensus 220 r~VLDIGCG-tG~~a~~La~~-~V~-~vdisp~dls~a~v~~A~ergv~~~~~v~d~~----~L--Pfpd~sFDlV~~~~ 290 (544)
.+||-.|+| .|..+..+++. ++. ++-++. .+.+.+++.+.+....+ ..... .+ ..+.+.+|+++...
T Consensus 184 ~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~---~~~~~~~~~~~g~~~vv-~~~~~~~~~~l~~~~~~~~vd~vld~~ 259 (363)
T cd08279 184 DTVAVIGCGGVGLNAIQGARIAGASRIIAVDP---VPEKLELARRFGATHTV-NASEDDAVEAVRDLTDGRGADYAFEAV 259 (363)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCcEEEEcC---CHHHHHHHHHhCCeEEe-CCCCccHHHHHHHHcCCCCCCEEEEcC
Confidence 478877775 34555555543 543 333322 22333444444542211 11100 00 01245689888533
Q ss_pred cccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 291 CLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 291 ~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
. ....+.++.+.|+++|.++..+.
T Consensus 260 ~-------~~~~~~~~~~~l~~~G~~v~~g~ 283 (363)
T cd08279 260 G-------RAATIRQALAMTRKGGTAVVVGM 283 (363)
T ss_pred C-------ChHHHHHHHHHhhcCCeEEEEec
Confidence 1 13567899999999999988753
No 373
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=32.67 E-value=2.5e+02 Score=28.74 Aligned_cols=90 Identities=21% Similarity=0.256 Sum_probs=49.6
Q ss_pred CCEEEEeCC--CCcHHHHHHhhC-CcEEEeCCccchHHHHHHHHHHcCCCeEEEEecccc---C-CCCCCCeeEEEeccc
Q 009069 219 IRTAIDTGC--GVASWGAYLMSR-NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIR---L-PYPSRAFDMAHCSRC 291 (544)
Q Consensus 219 ~r~VLDIGC--GtG~~a~~La~~-~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~---L-Pfpd~sFDlV~~~~~ 291 (544)
+.+||=+|+ +.|..+..+++. ++.++-++.. . ..+.+.+.+.. .+...+... . -.....+|+|+....
T Consensus 178 g~~vlI~g~~g~ig~~~~~~a~~~g~~vi~~~~~---~-~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~d~vi~~~g 252 (350)
T cd08274 178 GETVLVTGASGGVGSALVQLAKRRGAIVIAVAGA---A-KEEAVRALGAD-TVILRDAPLLADAKALGGEPVDVVADVVG 252 (350)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCc---h-hhHHHHhcCCe-EEEeCCCccHHHHHhhCCCCCcEEEecCC
Confidence 348888887 345555555553 5544444322 2 34455555543 211111000 0 113356999985321
Q ss_pred ccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 292 LIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 292 l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
...+.++.+.|+++|.++..+.
T Consensus 253 --------~~~~~~~~~~l~~~G~~v~~g~ 274 (350)
T cd08274 253 --------GPLFPDLLRLLRPGGRYVTAGA 274 (350)
T ss_pred --------HHHHHHHHHHhccCCEEEEecc
Confidence 2467889999999999987753
No 374
>PRK06701 short chain dehydrogenase; Provisional
Probab=32.62 E-value=2.4e+02 Score=28.54 Aligned_cols=103 Identities=13% Similarity=0.010 Sum_probs=49.7
Q ss_pred CCEEEEeCCCCc---HHHHHHhhCCcE--EEeCCccchHHHHHHHHHHcCCCeEEEEeccccCC-----CC-----CCCe
Q 009069 219 IRTAIDTGCGVA---SWGAYLMSRNIL--AVSFAPRDTHEAQVQFALERGVPALIGVMASIRLP-----YP-----SRAF 283 (544)
Q Consensus 219 ~r~VLDIGCGtG---~~a~~La~~~V~--~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LP-----fp-----d~sF 283 (544)
++++|=+|++.| .++..|++++.. .++...........+.....+..+.+..+|..... +. -+.+
T Consensus 46 ~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~~~i 125 (290)
T PRK06701 46 GKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEGVKCLLIPGDVSDEAFCKDAVEETVRELGRL 125 (290)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 347888887665 455566666544 44443322112222222233445556666643321 00 1357
Q ss_pred eEEEecccccc----cccC-h--------------HHHHHHHHHcccCCcEEEEEeC
Q 009069 284 DMAHCSRCLIP----WGQY-D--------------GLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 284 DlV~~~~~l~h----~~~d-~--------------~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
|+|+.+..... +.+. . ..+++.+.+.++++|.+++.+.
T Consensus 126 D~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~isS 182 (290)
T PRK06701 126 DILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTGS 182 (290)
T ss_pred CEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEec
Confidence 87775433211 1110 0 1344555666677888887643
No 375
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=32.37 E-value=28 Score=38.77 Aligned_cols=97 Identities=14% Similarity=0.130 Sum_probs=58.9
Q ss_pred CCEEEEeCCCCcHHHHHHhhCCcEEEeCCccchHHHHHHHHHHc----CCC--eEEEEeccc----cCCCCCCCeeEEEe
Q 009069 219 IRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER----GVP--ALIGVMASI----RLPYPSRAFDMAHC 288 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~V~~vdisp~dls~a~v~~A~er----gv~--~~~~v~d~~----~LPfpd~sFDlV~~ 288 (544)
+-+|||.=|++|.-+.+.+..---+.++...|.++..+....++ ++. +.....|+. ..+-.+..||+|..
T Consensus 110 ~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvIDL 189 (525)
T KOG1253|consen 110 SLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVIDL 189 (525)
T ss_pred cchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceEec
Confidence 33699999999977777665411123444445555555433322 221 112222321 22334678999984
Q ss_pred cccccccccChHHHHHHHHHcccCCcEEEEEe
Q 009069 289 SRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 289 ~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
.++.. +..||..+.+.++.||.|.++.
T Consensus 190 ----DPyGs-~s~FLDsAvqav~~gGLL~vT~ 216 (525)
T KOG1253|consen 190 ----DPYGS-PSPFLDSAVQAVRDGGLLCVTC 216 (525)
T ss_pred ----CCCCC-ccHHHHHHHHHhhcCCEEEEEe
Confidence 34443 5789999999999999999973
No 376
>PF08351 DUF1726: Domain of unknown function (DUF1726); InterPro: IPR013562 This entry represents a protein of unknown function and is found towards the N terminus of putative ATPases (IPR007807 from INTERPRO). ; PDB: 2ZPA_B.
Probab=31.50 E-value=26 Score=30.20 Aligned_cols=40 Identities=25% Similarity=0.351 Sum_probs=24.8
Q ss_pred CCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeCCC
Q 009069 280 SRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPPV 323 (544)
Q Consensus 280 d~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~pp~ 323 (544)
.++||+++... ...+. ...|..+.-.+|-||.+++..|+.
T Consensus 9 G~e~~~~i~d~-~~g~~---pnal~a~~gtv~gGGllill~p~~ 48 (92)
T PF08351_consen 9 GQEFDLLIFDA-FEGFD---PNALAALAGTVRGGGLLILLLPPW 48 (92)
T ss_dssp T--BSSEEEE--SS------HHHHHHHHTTB-TT-EEEEEES-G
T ss_pred CCccCEEEEEc-cCCCC---HHHHHHHhcceecCeEEEEEcCCH
Confidence 46788888633 32232 578899999999999999998853
No 377
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=30.56 E-value=1.1e+02 Score=34.04 Aligned_cols=105 Identities=16% Similarity=0.104 Sum_probs=64.6
Q ss_pred CCCEEEEeCCCCcHHHHHHhh----CCcEEEeCCccchHHHHHHHHHHcCCCeEEEEec----cccCC---CCCCCeeEE
Q 009069 218 SIRTAIDTGCGVASWGAYLMS----RNILAVSFAPRDTHEAQVQFALERGVPALIGVMA----SIRLP---YPSRAFDMA 286 (544)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~----~~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d----~~~LP---fpd~sFDlV 286 (544)
....+|=+|=|.|.+...|.. ..++++.++|.++.-+...+-........+...| ..++- -.+..||++
T Consensus 295 ~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~~k~~~~~~~~dvl 374 (482)
T KOG2352|consen 295 TGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGLDFLQRTAKSQQEDICPDVL 374 (482)
T ss_pred ccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhhhhhhhhHhhchHHHHHHhhccccccCCcEE
Confidence 344689999999988887754 3789999999888766555544322222222222 11111 145678888
Q ss_pred Ee----cccccccccCh-----HHHHHHHHHcccCCcEEEEEeCCC
Q 009069 287 HC----SRCLIPWGQYD-----GLYLIEVDRVLRPGGYWILSGPPV 323 (544)
Q Consensus 287 ~~----~~~l~h~~~d~-----~~~L~Ei~RVLKPGG~Lvis~pp~ 323 (544)
.- .. -|....-+ ..+|..+..+|.|-|.|+|-.-+.
T Consensus 375 ~~dvds~d-~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r 419 (482)
T KOG2352|consen 375 MVDVDSKD-SHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTR 419 (482)
T ss_pred EEECCCCC-cccCcCCchHHHHHHHHHHHhhccCccceEEEEEecC
Confidence 74 12 11211111 467888999999999999976433
No 378
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=30.36 E-value=3.1e+02 Score=28.16 Aligned_cols=91 Identities=16% Similarity=0.201 Sum_probs=46.0
Q ss_pred EEEEeCCC-CcHHHHHHhhC-CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEecccccccccC
Q 009069 221 TAIDTGCG-VASWGAYLMSR-NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQY 298 (544)
Q Consensus 221 ~VLDIGCG-tG~~a~~La~~-~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~sFDlV~~~~~l~h~~~d 298 (544)
+||=.|+| .|..+..+++. ++.++-++.. ....+++.+.+....+...+.....-..+.+|+|+.....
T Consensus 172 ~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~~---~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~d~v~~~~g~------ 242 (337)
T cd05283 172 RVGVVGIGGLGHLAVKFAKALGAEVTAFSRS---PSKKEDALKLGADEFIATKDPEAMKKAAGSLDLIIDTVSA------ 242 (337)
T ss_pred EEEEECCcHHHHHHHHHHHHcCCeEEEEcCC---HHHHHHHHHcCCcEEecCcchhhhhhccCCceEEEECCCC------
Confidence 56557763 33444444443 5544444322 2334445444533222111100000113568988853211
Q ss_pred hHHHHHHHHHcccCCcEEEEEeC
Q 009069 299 DGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 299 ~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
...+.++.+.|+++|.++..+.
T Consensus 243 -~~~~~~~~~~l~~~G~~v~~g~ 264 (337)
T cd05283 243 -SHDLDPYLSLLKPGGTLVLVGA 264 (337)
T ss_pred -cchHHHHHHHhcCCCEEEEEec
Confidence 1347888999999999998764
No 379
>PRK10083 putative oxidoreductase; Provisional
Probab=30.29 E-value=3.1e+02 Score=28.00 Aligned_cols=93 Identities=18% Similarity=0.150 Sum_probs=47.9
Q ss_pred CCEEEEeCCC-CcHHHHHHhh-C-CcE-EEeCCccchHHHHHHHHHHcCCCeEEEEec---cccCCCCCCCeeEEEeccc
Q 009069 219 IRTAIDTGCG-VASWGAYLMS-R-NIL-AVSFAPRDTHEAQVQFALERGVPALIGVMA---SIRLPYPSRAFDMAHCSRC 291 (544)
Q Consensus 219 ~r~VLDIGCG-tG~~a~~La~-~-~V~-~vdisp~dls~a~v~~A~ergv~~~~~v~d---~~~LPfpd~sFDlV~~~~~ 291 (544)
+.+||=.|+| .|..+..+++ . ++. ++-+ +..+...+++.+.|....+...+ ...+.-....+|+|+....
T Consensus 161 g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~---~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~g~~~d~vid~~g 237 (339)
T PRK10083 161 QDVALIYGAGPVGLTIVQVLKGVYNVKAVIVA---DRIDERLALAKESGADWVINNAQEPLGEALEEKGIKPTLIIDAAC 237 (339)
T ss_pred CCEEEEECCCHHHHHHHHHHHHhCCCCEEEEE---cCCHHHHHHHHHhCCcEEecCccccHHHHHhcCCCCCCEEEECCC
Confidence 3478888865 2344445555 2 542 2223 22334455565656532221110 0111111123567764221
Q ss_pred ccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 292 LIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 292 l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
....+.+..+.|+++|.++..+.
T Consensus 238 -------~~~~~~~~~~~l~~~G~~v~~g~ 260 (339)
T PRK10083 238 -------HPSILEEAVTLASPAARIVLMGF 260 (339)
T ss_pred -------CHHHHHHHHHHhhcCCEEEEEcc
Confidence 13568889999999999999864
No 380
>cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=30.19 E-value=2.4e+02 Score=27.51 Aligned_cols=43 Identities=14% Similarity=0.161 Sum_probs=32.1
Q ss_pred CCCCCeeEEEeccccccccc-----------ChHHHHHHHHHcccCCcEEEEEe
Q 009069 278 YPSRAFDMAHCSRCLIPWGQ-----------YDGLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 278 fpd~sFDlV~~~~~l~h~~~-----------d~~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
..++..|+|+.+.|++.+.- +.+.++..+..+|+|+-.+|+..
T Consensus 46 l~gg~~DVIi~Ns~LWDl~ry~~~~~~~Y~~NL~~Lf~rLk~~lp~~allIW~t 99 (183)
T cd01842 46 LEGGRLDLVIMNSCLWDLSRYQRNSMKTYRENLERLFSKLDSVLPIECLIVWNT 99 (183)
T ss_pred ecCCceeEEEEecceecccccCCCCHHHHHHHHHHHHHHHHhhCCCccEEEEec
Confidence 35667899999999976553 11466777778888999888874
No 381
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=29.38 E-value=4.7e+02 Score=26.09 Aligned_cols=92 Identities=18% Similarity=0.129 Sum_probs=47.5
Q ss_pred CCEEEEeCCC--CcHHHHHHhh-CCcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccc---cC--CCCCCCeeEEEecc
Q 009069 219 IRTAIDTGCG--VASWGAYLMS-RNILAVSFAPRDTHEAQVQFALERGVPALIGVMASI---RL--PYPSRAFDMAHCSR 290 (544)
Q Consensus 219 ~r~VLDIGCG--tG~~a~~La~-~~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~---~L--Pfpd~sFDlV~~~~ 290 (544)
+.+||=+|.+ .|..+..++. .++.++-++. +....+.+...+....+...+.. .+ ......+|+++...
T Consensus 167 ~~~vlI~g~~~~iG~~~~~~~~~~g~~v~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~ 243 (342)
T cd08266 167 GETVLVHGAGSGVGSAAIQIAKLFGATVIATAG---SEDKLERAKELGADYVIDYRKEDFVREVRELTGKRGVDVVVEHV 243 (342)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCCeEEecCChHHHHHHHHHhCCCCCcEEEECC
Confidence 3478888875 4455555544 3544333322 22333444444433222111100 00 01234689888643
Q ss_pred cccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 291 CLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 291 ~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
. ...+.++.+.|+++|.++..+.
T Consensus 244 g--------~~~~~~~~~~l~~~G~~v~~~~ 266 (342)
T cd08266 244 G--------AATWEKSLKSLARGGRLVTCGA 266 (342)
T ss_pred c--------HHHHHHHHHHhhcCCEEEEEec
Confidence 2 2456778889999999988754
No 382
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=28.90 E-value=2e+02 Score=30.04 Aligned_cols=35 Identities=20% Similarity=0.157 Sum_probs=25.7
Q ss_pred CCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 280 SRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 280 d~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
+..||+|+.... ....+.++.+.|+++|.++..+.
T Consensus 254 ~~~~d~vld~vg-------~~~~~~~~~~~l~~~G~~v~~g~ 288 (367)
T cd08263 254 GRGVDVVVEALG-------KPETFKLALDVVRDGGRAVVVGL 288 (367)
T ss_pred CCCCCEEEEeCC-------CHHHHHHHHHHHhcCCEEEEEcc
Confidence 456999985321 12367889999999999988754
No 383
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=28.61 E-value=2.3e+02 Score=28.56 Aligned_cols=91 Identities=19% Similarity=0.187 Sum_probs=50.4
Q ss_pred CEEEEeCC--CCcHHHHHHhhC-CcEEEeCCccchHHHHHHHHHHcCCCeEEEEecc--cc-CCCCCCCeeEEEeccccc
Q 009069 220 RTAIDTGC--GVASWGAYLMSR-NILAVSFAPRDTHEAQVQFALERGVPALIGVMAS--IR-LPYPSRAFDMAHCSRCLI 293 (544)
Q Consensus 220 r~VLDIGC--GtG~~a~~La~~-~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~--~~-LPfpd~sFDlV~~~~~l~ 293 (544)
.+||=+|+ +.|..+..+++. ++.++-++. ++...+++.+.|....+...+. .. ..+....+|+|+...
T Consensus 148 ~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~vld~~--- 221 (326)
T cd08289 148 GPVLVTGATGGVGSLAVSILAKLGYEVVASTG---KADAADYLKKLGAKEVIPREELQEESIKPLEKQRWAGAVDPV--- 221 (326)
T ss_pred CEEEEEcCCchHHHHHHHHHHHCCCeEEEEec---CHHHHHHHHHcCCCEEEcchhHHHHHHHhhccCCcCEEEECC---
Confidence 47888887 345555556553 555443322 2334555555554322211110 00 011234588887432
Q ss_pred ccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 294 PWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 294 h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
....+.++.+.|+++|.++..+.
T Consensus 222 -----g~~~~~~~~~~l~~~G~~i~~g~ 244 (326)
T cd08289 222 -----GGKTLAYLLSTLQYGGSVAVSGL 244 (326)
T ss_pred -----cHHHHHHHHHHhhcCCEEEEEee
Confidence 12567889999999999999875
No 384
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=28.35 E-value=3.5e+02 Score=26.91 Aligned_cols=88 Identities=20% Similarity=0.228 Sum_probs=50.4
Q ss_pred CCEEEEeCCC--CcHHHHHHhhC-CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEeccccccc
Q 009069 219 IRTAIDTGCG--VASWGAYLMSR-NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPW 295 (544)
Q Consensus 219 ~r~VLDIGCG--tG~~a~~La~~-~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~sFDlV~~~~~l~h~ 295 (544)
+.+||=.|++ .|..+..+++. +..++-++. .....+++.+.|....+. .... +.++.+|+++...
T Consensus 133 ~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~~~~~--~~~~--~~~~~~d~vl~~~----- 200 (305)
T cd08270 133 GRRVLVTGASGGVGRFAVQLAALAGAHVVAVVG---SPARAEGLRELGAAEVVV--GGSE--LSGAPVDLVVDSV----- 200 (305)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCcEEEe--cccc--ccCCCceEEEECC-----
Confidence 4578888874 44555555543 554444422 234455555555442221 1112 2234689998532
Q ss_pred ccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 296 GQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 296 ~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
....+.+..+.|+++|.++..+.
T Consensus 201 ---g~~~~~~~~~~l~~~G~~v~~g~ 223 (305)
T cd08270 201 ---GGPQLARALELLAPGGTVVSVGS 223 (305)
T ss_pred ---CcHHHHHHHHHhcCCCEEEEEec
Confidence 12357889999999999998763
No 385
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=28.11 E-value=2.4e+02 Score=24.42 Aligned_cols=57 Identities=19% Similarity=0.195 Sum_probs=34.1
Q ss_pred HHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 253 EAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 253 ~a~v~~A~ergv~~~~~v~d~~~LPfpd~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
..-.+...++|+++...+......+-.....|+++++.-+ . .++.. .|.|++++...
T Consensus 20 ~kve~~l~~~gi~~~~~~~~v~~~~~~~~~aDiiv~s~~l---~-------~~~~~--~~~~~v~~~~~ 76 (93)
T COG3414 20 MKVEEVLKELGIDVDVEQCAVDEIKALTDGADIIVTSTKL---A-------DEFED--IPKGYVVITGN 76 (93)
T ss_pred HHHHHHHHHcCCCceeeeEEecccccCCCcccEEEEehHh---h-------hhcCc--CCCceEEEEcc
Confidence 3344566678887666665555555445667999987632 1 22212 24488888865
No 386
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=28.01 E-value=1.9e+02 Score=30.00 Aligned_cols=89 Identities=21% Similarity=0.154 Sum_probs=54.1
Q ss_pred EEEEeCCC--CcHHHHHHhhCCc--EEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEecccccccc
Q 009069 221 TAIDTGCG--VASWGAYLMSRNI--LAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWG 296 (544)
Q Consensus 221 ~VLDIGCG--tG~~a~~La~~~V--~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~sFDlV~~~~~l~h~~ 296 (544)
+|+=+|.| .|+++..|.+++. .+++. |.+.+..+.+.+.++........ .-......|+|+.+- +..
T Consensus 5 ~v~IvG~GliG~s~a~~l~~~g~~v~i~g~---d~~~~~~~~a~~lgv~d~~~~~~---~~~~~~~aD~Vivav---Pi~ 75 (279)
T COG0287 5 KVGIVGLGLMGGSLARALKEAGLVVRIIGR---DRSAATLKAALELGVIDELTVAG---LAEAAAEADLVIVAV---PIE 75 (279)
T ss_pred EEEEECCchHHHHHHHHHHHcCCeEEEEee---cCcHHHHHHHhhcCcccccccch---hhhhcccCCEEEEec---cHH
Confidence 67778877 4577888877753 34566 55666666676666433322111 011234579998643 222
Q ss_pred cChHHHHHHHHHcccCCcEEEEE
Q 009069 297 QYDGLYLIEVDRVLRPGGYWILS 319 (544)
Q Consensus 297 ~d~~~~L~Ei~RVLKPGG~Lvis 319 (544)
. ...+++++...|++|-.+.=.
T Consensus 76 ~-~~~~l~~l~~~l~~g~iv~Dv 97 (279)
T COG0287 76 A-TEEVLKELAPHLKKGAIVTDV 97 (279)
T ss_pred H-HHHHHHHhcccCCCCCEEEec
Confidence 2 368888888888888766443
No 387
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=27.81 E-value=1.7e+02 Score=27.82 Aligned_cols=40 Identities=10% Similarity=0.148 Sum_probs=25.8
Q ss_pred CCEEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHH
Q 009069 219 IRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQF 258 (544)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~ 258 (544)
...|+.+|||-=+.+.+|... ++..++++..+......+.
T Consensus 79 ~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~p~v~~~K~~~ 120 (183)
T PF04072_consen 79 ARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDLPEVIALKRRL 120 (183)
T ss_dssp ESEEEEET-TT--HHHHHHHTTTTEEEEEEE-HHHHHHHHHH
T ss_pred CcEEEEcCCCCCchHHHhhccccceEEEEeCCHHHHHHHHHH
Confidence 447999999999999998873 7888888554444444333
No 388
>PF01558 POR: Pyruvate ferredoxin/flavodoxin oxidoreductase; InterPro: IPR019752 This domain is found in prokaryotes. It includes a region of the large protein pyruvate-flavodoxin oxidoreductase and the whole pyruvate ferredoxin oxidoreductase gamma subunit protein. It is not known whether the gamma subunit has a catalytic or regulatory role. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors, 0055114 oxidation-reduction process; PDB: 2RAA_A 3ON3_A 3G2E_A 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B ....
Probab=27.65 E-value=1.3e+02 Score=28.17 Aligned_cols=34 Identities=24% Similarity=0.259 Sum_probs=26.1
Q ss_pred CCCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 279 PSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 279 pd~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
+.+.+|++++.. ...+......|||||.+++...
T Consensus 54 ~~~~~Dilv~l~---------~~~~~~~~~~l~~~g~vi~ns~ 87 (173)
T PF01558_consen 54 PVGEADILVALD---------PEALERHLKGLKPGGVVIINSS 87 (173)
T ss_dssp -TSSESEEEESS---------HHHHHHCGTTCETTEEEEEETT
T ss_pred ccCCCCEEEEcC---------HHHHHHHhcCcCcCeEEEEECC
Confidence 337999999853 3455588888999999999864
No 389
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=27.49 E-value=3.5e+02 Score=28.53 Aligned_cols=36 Identities=8% Similarity=0.072 Sum_probs=26.4
Q ss_pred CCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 280 SRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 280 d~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
...+|+|+.... .....+.++.+.|+++|.++..+.
T Consensus 273 g~gvDvvld~~g------~~~~~~~~~~~~l~~~G~~v~~g~ 308 (384)
T cd08265 273 GWGADIQVEAAG------APPATIPQMEKSIAINGKIVYIGR 308 (384)
T ss_pred CCCCCEEEECCC------CcHHHHHHHHHHHHcCCEEEEECC
Confidence 346999985321 124578889999999999998764
No 390
>PLN03193 beta-1,3-galactosyltransferase; Provisional
Probab=27.38 E-value=47 Score=36.27 Aligned_cols=28 Identities=21% Similarity=0.237 Sum_probs=21.8
Q ss_pred ccchHHHHHHHHHHHHHHHhhhhccCCC
Q 009069 19 HANLYSITLVTILCTIFYLAGMWQHSPG 46 (544)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 46 (544)
.|+.+..=.+++||+++|++|..+.+..
T Consensus 12 ~~~~~~~~~~~~~~~~~f~~g~~~~~~~ 39 (408)
T PLN03193 12 SRSVVSRKWTLLLCLGCFCAGMLFTDRM 39 (408)
T ss_pred ccccccHHHHHHHHHHHHHHHHhhcccc
Confidence 3444555668899999999999998654
No 391
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=27.06 E-value=4.7e+02 Score=27.42 Aligned_cols=97 Identities=16% Similarity=0.037 Sum_probs=49.2
Q ss_pred CEEEEeCCCCcHHHHHHhhCCcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCC---CCCCCeeEEEecccccc--
Q 009069 220 RTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLP---YPSRAFDMAHCSRCLIP-- 294 (544)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LP---fpd~sFDlV~~~~~l~h-- 294 (544)
.+++|+=||.|.+..-+...++.++.....+. ..++.-..+.....+...|...+. +....+|+++...-=..
T Consensus 4 ~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~--~a~~ty~~n~~~~~~~~~di~~~~~~~~~~~~~DvligGpPCQ~FS 81 (328)
T COG0270 4 MKVIDLFAGIGGLSLGFEEAGFEIVFANEIDP--PAVATYKANFPHGDIILGDIKELDGEALRKSDVDVLIGGPPCQDFS 81 (328)
T ss_pred ceEEeeccCCchHHHHHHhcCCeEEEEEecCH--HHHHHHHHhCCCCceeechHhhcChhhccccCCCEEEeCCCCcchh
Confidence 37999999999998888887754333222122 232222222221333334443322 11117899996221111
Q ss_pred ------cccCh-H---HHHHHHHHcccCCcEEEEE
Q 009069 295 ------WGQYD-G---LYLIEVDRVLRPGGYWILS 319 (544)
Q Consensus 295 ------~~~d~-~---~~L~Ei~RVLKPGG~Lvis 319 (544)
..+++ . .-+.++...++| -.|++.
T Consensus 82 ~aG~r~~~~D~R~~L~~~~~r~I~~~~P-~~fv~E 115 (328)
T COG0270 82 IAGKRRGYDDPRGSLFLEFIRLIEQLRP-KFFVLE 115 (328)
T ss_pred hcCcccCCcCccceeeHHHHHHHHhhCC-CEEEEe
Confidence 12222 2 345556666788 555555
No 392
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=26.63 E-value=3.1e+02 Score=28.08 Aligned_cols=92 Identities=16% Similarity=0.138 Sum_probs=49.7
Q ss_pred CCEEEEeCCCC-cHHHHHHhhC-Cc-EEEeCCccchHHHHHHHHHHcCCCeEEEEecc------ccCCCCCCCeeEEEec
Q 009069 219 IRTAIDTGCGV-ASWGAYLMSR-NI-LAVSFAPRDTHEAQVQFALERGVPALIGVMAS------IRLPYPSRAFDMAHCS 289 (544)
Q Consensus 219 ~r~VLDIGCGt-G~~a~~La~~-~V-~~vdisp~dls~a~v~~A~ergv~~~~~v~d~------~~LPfpd~sFDlV~~~ 289 (544)
+.+||-.|+|. |..+..+++. ++ .++-++ .++...+++.+.|....+..-+. ..+ ...+.+|+|+..
T Consensus 164 g~~vlV~~~g~vg~~~~~la~~~G~~~v~~~~---~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~-~~~~~~d~v~d~ 239 (341)
T PRK05396 164 GEDVLITGAGPIGIMAAAVAKHVGARHVVITD---VNEYRLELARKMGATRAVNVAKEDLRDVMAEL-GMTEGFDVGLEM 239 (341)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCEEEEEc---CCHHHHHHHHHhCCcEEecCccccHHHHHHHh-cCCCCCCEEEEC
Confidence 34677777653 4455555543 54 222222 12334455556564322211000 011 124568999852
Q ss_pred ccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 290 RCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 290 ~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
.. ....+.++.+.|+++|.++..+.
T Consensus 240 ~g-------~~~~~~~~~~~l~~~G~~v~~g~ 264 (341)
T PRK05396 240 SG-------APSAFRQMLDNMNHGGRIAMLGI 264 (341)
T ss_pred CC-------CHHHHHHHHHHHhcCCEEEEEec
Confidence 21 24678889999999999999875
No 393
>PF14881 Tubulin_3: Tubulin domain
Probab=26.43 E-value=30 Score=33.47 Aligned_cols=63 Identities=24% Similarity=0.521 Sum_probs=37.3
Q ss_pred CcchHhhHHh---hHHHHHHHHHHHhhhhcCCCCCCcchhhhccccccchhhhcc--------CCCc-eeeEecCCCC
Q 009069 444 GVTAEMFRED---TALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYLGGFAAALV--------DDPL-WVMNTVPVEA 509 (544)
Q Consensus 444 ~~~~~~~~~d---~~~w~~~v~~y~~~~~~~~~~~~~rnvmdm~a~~ggfaaal~--------~~~~-wvmnvvp~~~ 509 (544)
++..+.|++. .....+.++.|-.-=..| .-+-=+.|+..++||||+.++ +.++ |+.++-+...
T Consensus 44 ~~G~~~f~~~~~~~d~~D~~lR~f~EECD~l---QGfQ~~~d~d~gwgGfas~~Le~L~DEy~k~~i~~~~~~~~~~~ 118 (180)
T PF14881_consen 44 GVGQELFKSLDYEEDFFDRDLRFFLEECDSL---QGFQVLTDVDDGWGGFASSLLEHLRDEYPKKPIIWVWGLRDPSS 118 (180)
T ss_pred cchHHHHhhhhhhhHHHHHHHHHHHHHcccc---cceEEEecCCCchHhHHHHHHHHHHHHcCCCceEEeecCCCccc
Confidence 4445666642 244555565544321111 233447789999999999997 3564 9887755443
No 394
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=26.37 E-value=4.7e+02 Score=26.73 Aligned_cols=92 Identities=11% Similarity=0.118 Sum_probs=48.2
Q ss_pred CCEEEEeCCC-CcHHHHHHhhC-CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCC---CCCCCeeEEEeccccc
Q 009069 219 IRTAIDTGCG-VASWGAYLMSR-NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLP---YPSRAFDMAHCSRCLI 293 (544)
Q Consensus 219 ~r~VLDIGCG-tG~~a~~La~~-~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LP---fpd~sFDlV~~~~~l~ 293 (544)
+.+||=.|+| .|..+..+++. ++.++-++. .+...+++.+.|....+. .....+. .....+|+++....
T Consensus 164 ~~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~---~~~~~~~~~~~g~~~~i~-~~~~~~~~~~~~~~~~d~vi~~~g-- 237 (333)
T cd08296 164 GDLVAVQGIGGLGHLAVQYAAKMGFRTVAISR---GSDKADLARKLGAHHYID-TSKEDVAEALQELGGAKLILATAP-- 237 (333)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCeEEEEeC---ChHHHHHHHHcCCcEEec-CCCccHHHHHHhcCCCCEEEECCC--
Confidence 3478888854 23444444443 544333322 234455665555422221 1110000 00134788885211
Q ss_pred ccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 294 PWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 294 h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
....+.++.+.|+++|.++..+.
T Consensus 238 -----~~~~~~~~~~~l~~~G~~v~~g~ 260 (333)
T cd08296 238 -----NAKAISALVGGLAPRGKLLILGA 260 (333)
T ss_pred -----chHHHHHHHHHcccCCEEEEEec
Confidence 13578889999999999998764
No 395
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=25.75 E-value=3.4e+02 Score=27.11 Aligned_cols=96 Identities=11% Similarity=0.006 Sum_probs=57.1
Q ss_pred CEEEEeCCCCcHHHHHHhh--------CCcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCC-------CCCCCee
Q 009069 220 RTAIDTGCGVASWGAYLMS--------RNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLP-------YPSRAFD 284 (544)
Q Consensus 220 r~VLDIGCGtG~~a~~La~--------~~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LP-------fpd~sFD 284 (544)
+.|+++|.-.|..+.+.+. ..|.++||+-.....+..+ -..+.+..++..... ...+.--
T Consensus 71 ~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e-----~p~i~f~egss~dpai~eqi~~~~~~y~k 145 (237)
T COG3510 71 SLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE-----VPDILFIEGSSTDPAIAEQIRRLKNEYPK 145 (237)
T ss_pred ceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc-----CCCeEEEeCCCCCHHHHHHHHHHhcCCCc
Confidence 4799999998866655543 2578888866665544432 345677766543322 1111112
Q ss_pred EEEecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 285 MAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 285 lV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
+.+|-.+- |-++..-+-|+-..+.|.-|-|+++.+.
T Consensus 146 IfvilDsd-Hs~~hvLAel~~~~pllsaG~Y~vVeDs 181 (237)
T COG3510 146 IFVILDSD-HSMEHVLAELKLLAPLLSAGDYLVVEDS 181 (237)
T ss_pred EEEEecCC-chHHHHHHHHHHhhhHhhcCceEEEecc
Confidence 22333333 4343335566777889999999999754
No 396
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=25.56 E-value=2.8e+02 Score=29.37 Aligned_cols=52 Identities=17% Similarity=0.320 Sum_probs=32.4
Q ss_pred HHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC--C--cEEEeCCccchHHHHHHHHHHc
Q 009069 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--N--ILAVSFAPRDTHEAQVQFALER 262 (544)
Q Consensus 204 ~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~--V~~vdisp~dls~a~v~~A~er 262 (544)
.++++.+.+...++. ..||.=-|.|..+..++++ + ++++|- ...+++.+.++
T Consensus 8 ll~Evl~~L~~~~~g--~~vD~T~G~GGHS~aiL~~~~~~~li~~Dr-----D~~a~~~a~~~ 63 (310)
T PF01795_consen 8 LLKEVLEALNPKPGG--IYVDCTFGGGGHSKAILEKLPNGRLIGIDR-----DPEALERAKER 63 (310)
T ss_dssp THHHHHHHHT--TT---EEEETT-TTSHHHHHHHHT-TT-EEEEEES------HHHHHHHHCC
T ss_pred cHHHHHHhhCcCCCc--eEEeecCCcHHHHHHHHHhCCCCeEEEecC-----CHHHHHHHHHH
Confidence 345666666555444 8999999999999999876 3 455555 44555566554
No 397
>PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein. This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A.
Probab=25.33 E-value=3e+02 Score=28.62 Aligned_cols=107 Identities=13% Similarity=0.046 Sum_probs=48.9
Q ss_pred HHHHHhc---ccCCCCCEEEEeCCCCc-------HHHHHHhhCCcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccC
Q 009069 207 DIGKLIN---LKDGSIRTAIDTGCGVA-------SWGAYLMSRNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRL 276 (544)
Q Consensus 207 ~L~~lL~---l~~g~~r~VLDIGCGtG-------~~a~~La~~~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~L 276 (544)
+|-+++. +.-+...+||-+|+|+- ...+.++..+...+|.+-.+. ... .+ ....+|-..+
T Consensus 47 QLCqYln~~tlaVP~nMrVlHlGAgSdkGvaPGt~VLrqwlP~~ailvDnDi~d~-------vSD--a~-~~~~~Dc~t~ 116 (299)
T PF06460_consen 47 QLCQYLNKTTLAVPHNMRVLHLGAGSDKGVAPGTAVLRQWLPEDAILVDNDIRDY-------VSD--AD-QSIVGDCRTY 116 (299)
T ss_dssp HHHHHHTTS-----TT-EEEEES---TTSB-HHHHHHHHHS-TT-EEEEEESS---------B-S--SS-EEEES-GGGE
T ss_pred HHHHHhccccEeeccCcEEEEecccccCCcCCchHHHHHhCCCCcEEEecchhhh-------ccc--cC-Cceecccccc
Confidence 5556654 23345668999999864 344455556888888833221 111 11 2334454444
Q ss_pred CCCCCCeeEEEeccc--ccccc----cChHHH----HHHHHHcccCCcEEEEEeCCCC
Q 009069 277 PYPSRAFDMAHCSRC--LIPWG----QYDGLY----LIEVDRVLRPGGYWILSGPPVN 324 (544)
Q Consensus 277 Pfpd~sFDlV~~~~~--l~h~~----~d~~~~----L~Ei~RVLKPGG~Lvis~pp~~ 324 (544)
. ++..||+|++-.- ..+.. ...+.+ ..-+..-|+=||.+++-.....
T Consensus 117 ~-~~~k~DlIiSDmYd~~~k~~~~~n~~~~~fF~yl~~~i~~kLaLGGSvaiKiTE~S 173 (299)
T PF06460_consen 117 M-PPDKFDLIISDMYDGRTKNCDGENNSKEGFFTYLCGFIKEKLALGGSVAIKITEHS 173 (299)
T ss_dssp E-ESS-EEEEEE----TTS-SS-S------THHHHHHHHHHHHEEEEEEEEEEE-SSS
T ss_pred C-CCCcccEEEEecccccccccccccCCccccHHHHHHHHHhhhhcCceEEEEeeccc
Confidence 3 4578999998442 00001 011223 3344567888999999866443
No 398
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=25.27 E-value=1.7e+02 Score=31.26 Aligned_cols=96 Identities=15% Similarity=0.114 Sum_probs=59.7
Q ss_pred CEEEEeCCCC-cHHHHHHhh---CCcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEeccccccc
Q 009069 220 RTAIDTGCGV-ASWGAYLMS---RNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPW 295 (544)
Q Consensus 220 r~VLDIGCGt-G~~a~~La~---~~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~sFDlV~~~~~l~h~ 295 (544)
.+|.=||.|+ |..++.++- ..|+..|++..-+. ++-..-+..+.........+.-.-...|+|+. .++++-
T Consensus 169 ~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~----~ldd~f~~rv~~~~st~~~iee~v~~aDlvIg-aVLIpg 243 (371)
T COG0686 169 AKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLR----QLDDLFGGRVHTLYSTPSNIEEAVKKADLVIG-AVLIPG 243 (371)
T ss_pred ccEEEECCccccchHHHHHhccCCeeEEEecCHHHHh----hhhHhhCceeEEEEcCHHHHHHHhhhccEEEE-EEEecC
Confidence 3577889885 677777765 36888888442221 11112233333332222222222346899987 456677
Q ss_pred ccChHHHHHHHHHcccCCcEEEEEe
Q 009069 296 GQYDGLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 296 ~~d~~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
...|....+|+...+|||+.++=..
T Consensus 244 akaPkLvt~e~vk~MkpGsVivDVA 268 (371)
T COG0686 244 AKAPKLVTREMVKQMKPGSVIVDVA 268 (371)
T ss_pred CCCceehhHHHHHhcCCCcEEEEEE
Confidence 7777889999999999999887663
No 399
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=25.22 E-value=5.8e+02 Score=27.08 Aligned_cols=90 Identities=16% Similarity=0.120 Sum_probs=53.5
Q ss_pred CEEEEeCCCCcHHHHHHhhCCcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEecccccccccCh
Q 009069 220 RTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYD 299 (544)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~sFDlV~~~~~l~h~~~d~ 299 (544)
+.||=+|--...+...|....+.+... ..+..+ .+....+..+.|.. +.. .+ ....||+|+. .|+...
T Consensus 21 ~~~l~~~~~~d~~~~~l~~~~~~~~~~---~~~~~~-~~~~~~~~~~~f~~-~~~-~~-~~~~~d~~~~-----~~pk~k 88 (342)
T PRK09489 21 RRVLFAGDLQDDLPAQLDAASVRVHTQ---QFHHWQ-VLSRQMGDNARFSL-VAT-AE-DVADCDTLIY-----YWPKNK 88 (342)
T ss_pred CcEEEEcCcchhhHHhhhccceEEehh---hhHHHH-HHHhhcCCceEecc-ccC-Cc-cCCCCCEEEE-----ECCCCH
Confidence 368999988888887776444443322 222221 22222233444442 111 11 2257999875 344333
Q ss_pred ---HHHHHHHHHcccCCcEEEEEeC
Q 009069 300 ---GLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 300 ---~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
+..|..+.+.|+|||.+++.+.
T Consensus 89 ~~~~~~l~~~~~~l~~g~~i~~~G~ 113 (342)
T PRK09489 89 QEAQFQLMNLLSLLPVGTDIFVVGE 113 (342)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEEe
Confidence 5788999999999999999975
No 400
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=24.37 E-value=1e+02 Score=26.96 Aligned_cols=65 Identities=18% Similarity=0.035 Sum_probs=47.0
Q ss_pred hHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeCC
Q 009069 251 THEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGPP 322 (544)
Q Consensus 251 ls~a~v~~A~ergv~~~~~v~d~~~LPfpd~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~pp 322 (544)
+.+...+.+.++|+++.+.......++-..+.+|+|+... .-...+.++...+.+-|.-+...++
T Consensus 16 la~km~~~a~~~gi~~~i~a~~~~e~~~~~~~~Dvill~P-------Qv~~~~~~i~~~~~~~~ipv~~I~~ 80 (99)
T cd05565 16 LANALNKGAKERGVPLEAAAGAYGSHYDMIPDYDLVILAP-------QMASYYDELKKDTDRLGIKLVTTTG 80 (99)
T ss_pred HHHHHHHHHHHCCCcEEEEEeeHHHHHHhccCCCEEEEcC-------hHHHHHHHHHHHhhhcCCCEEEeCH
Confidence 3456667788899988888777666665556789888654 2366788888888888877766553
No 401
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=23.62 E-value=1.5e+02 Score=31.36 Aligned_cols=49 Identities=24% Similarity=0.315 Sum_probs=37.3
Q ss_pred CCCCEEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCC
Q 009069 217 GSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGVP 265 (544)
Q Consensus 217 g~~r~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~A~ergv~ 265 (544)
+.+.+|.-||.|.-....+|.+. .|.++|+.+.-+.-...+++.-|..+
T Consensus 62 g~ghrivtigSGGcn~L~ylsr~Pa~id~VDlN~ahiAln~lklaA~R~Lp 112 (414)
T COG5379 62 GIGHRIVTIGSGGCNMLAYLSRAPARIDVVDLNPAHIALNRLKLAAFRHLP 112 (414)
T ss_pred CCCcEEEEecCCcchHHHHhhcCCceeEEEeCCHHHHHHHHHHHHHHhhcc
Confidence 34558999999998888888765 79999998877766666666655443
No 402
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=23.11 E-value=5.2e+02 Score=25.29 Aligned_cols=90 Identities=16% Similarity=0.105 Sum_probs=49.6
Q ss_pred CEEEEeCC--CCcHHHHHHhhC-CcEEEeCCccchHHHHHHHHHHcCCCeEEEEec------cccCCCCCCCeeEEEecc
Q 009069 220 RTAIDTGC--GVASWGAYLMSR-NILAVSFAPRDTHEAQVQFALERGVPALIGVMA------SIRLPYPSRAFDMAHCSR 290 (544)
Q Consensus 220 r~VLDIGC--GtG~~a~~La~~-~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d------~~~LPfpd~sFDlV~~~~ 290 (544)
.+||=.|+ +.|..+..+++. ++.++-++. .....+++.+.+....+...+ ...+ .....+|+|+...
T Consensus 138 ~~vlI~g~~g~~g~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~d~vl~~~ 213 (320)
T cd05286 138 DTVLVHAAAGGVGLLLTQWAKALGATVIGTVS---SEEKAELARAAGADHVINYRDEDFVERVREI-TGGRGVDVVYDGV 213 (320)
T ss_pred CEEEEEcCCchHHHHHHHHHHHcCCEEEEEcC---CHHHHHHHHHCCCCEEEeCCchhHHHHHHHH-cCCCCeeEEEECC
Confidence 47888884 355555556554 554444422 233445555555432222111 0011 1234689998532
Q ss_pred cccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 291 CLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 291 ~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
. ...+.++.+.|+++|.++..+.
T Consensus 214 ~--------~~~~~~~~~~l~~~g~~v~~g~ 236 (320)
T cd05286 214 G--------KDTFEGSLDSLRPRGTLVSFGN 236 (320)
T ss_pred C--------cHhHHHHHHhhccCcEEEEEec
Confidence 1 2466778899999999998754
No 403
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=22.89 E-value=3.1e+02 Score=28.17 Aligned_cols=33 Identities=18% Similarity=0.087 Sum_probs=24.8
Q ss_pred CeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 282 AFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 282 sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
.+|+|+.... ....+.++.+.|+++|.++..+.
T Consensus 243 ~~d~vid~~g-------~~~~~~~~~~~l~~~g~~v~~g~ 275 (350)
T cd08240 243 GVDAVIDFVN-------NSATASLAFDILAKGGKLVLVGL 275 (350)
T ss_pred CCcEEEECCC-------CHHHHHHHHHHhhcCCeEEEECC
Confidence 6888885331 13578999999999999997653
No 404
>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]
Probab=22.80 E-value=2.9e+02 Score=28.78 Aligned_cols=98 Identities=17% Similarity=0.150 Sum_probs=59.0
Q ss_pred HHhcccCCCCCEEE--EeCCCCcHHHHHHhhC-CcEEEeCCccchHHHHHHHHHHcCCC--eEEEEecccc--CCCC-CC
Q 009069 210 KLINLKDGSIRTAI--DTGCGVASWGAYLMSR-NILAVSFAPRDTHEAQVQFALERGVP--ALIGVMASIR--LPYP-SR 281 (544)
Q Consensus 210 ~lL~l~~g~~r~VL--DIGCGtG~~a~~La~~-~V~~vdisp~dls~a~v~~A~ergv~--~~~~v~d~~~--LPfp-d~ 281 (544)
+....++|. +|| --..|.|.+.-.|++. +.+++..+. ..+..+.|.++|.. +.+..-|..+ ..+. ..
T Consensus 140 e~y~vkpGh--tVlvhaAAGGVGlll~Ql~ra~~a~tI~~as---TaeK~~~akenG~~h~I~y~~eD~v~~V~kiTngK 214 (336)
T KOG1197|consen 140 EAYNVKPGH--TVLVHAAAGGVGLLLCQLLRAVGAHTIATAS---TAEKHEIAKENGAEHPIDYSTEDYVDEVKKITNGK 214 (336)
T ss_pred HhcCCCCCC--EEEEEeccccHHHHHHHHHHhcCcEEEEEec---cHHHHHHHHhcCCcceeeccchhHHHHHHhccCCC
Confidence 333455665 555 3455778877777764 777776633 34566778888864 3333222111 1122 34
Q ss_pred CeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEe
Q 009069 282 AFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 282 sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
..|+++-+- ....+..-...|||+|+++--+
T Consensus 215 GVd~vyDsv--------G~dt~~~sl~~Lk~~G~mVSfG 245 (336)
T KOG1197|consen 215 GVDAVYDSV--------GKDTFAKSLAALKPMGKMVSFG 245 (336)
T ss_pred Cceeeeccc--------cchhhHHHHHHhccCceEEEec
Confidence 578877433 2456777888999999998754
No 405
>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et
Probab=22.75 E-value=7.2e+02 Score=24.23 Aligned_cols=90 Identities=18% Similarity=0.212 Sum_probs=47.2
Q ss_pred CCEEEEeCC--CCcHHHHHHhhC-CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccC--CCCCCCeeEEEeccccc
Q 009069 219 IRTAIDTGC--GVASWGAYLMSR-NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRL--PYPSRAFDMAHCSRCLI 293 (544)
Q Consensus 219 ~r~VLDIGC--GtG~~a~~La~~-~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~L--Pfpd~sFDlV~~~~~l~ 293 (544)
+.+||=.|+ +.|..+..+++. ++.++-++.. . ..+++.+.+....+.. ..... ....+.+|+++...
T Consensus 145 ~~~vlv~g~~g~~g~~~~~~a~~~g~~v~~~~~~---~-~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~d~v~~~~--- 216 (309)
T cd05289 145 GQTVLIHGAAGGVGSFAVQLAKARGARVIATASA---A-NADFLRSLGADEVIDY-TKGDFERAAAPGGVDAVLDTV--- 216 (309)
T ss_pred CCEEEEecCCchHHHHHHHHHHHcCCEEEEEecc---h-hHHHHHHcCCCEEEeC-CCCchhhccCCCCceEEEECC---
Confidence 347887886 244444444443 5544433222 2 3344444443222211 11111 12334688887532
Q ss_pred ccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 294 PWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 294 h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
....+.++.+.|+++|.++..+.
T Consensus 217 -----~~~~~~~~~~~l~~~g~~v~~g~ 239 (309)
T cd05289 217 -----GGETLARSLALVKPGGRLVSIAG 239 (309)
T ss_pred -----chHHHHHHHHHHhcCcEEEEEcC
Confidence 12367888899999999988754
No 406
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=22.67 E-value=4.8e+02 Score=26.67 Aligned_cols=35 Identities=17% Similarity=0.136 Sum_probs=25.5
Q ss_pred CCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 280 SRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 280 d~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
...+|+|+... . ....+..+.+.|+++|.++..+.
T Consensus 233 ~~~~d~vld~~------g-~~~~~~~~~~~l~~~g~~v~~g~ 267 (345)
T cd08286 233 GRGVDVVIEAV------G-IPATFELCQELVAPGGHIANVGV 267 (345)
T ss_pred CCCCCEEEECC------C-CHHHHHHHHHhccCCcEEEEecc
Confidence 34699998532 1 23467888899999999997754
No 407
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=22.60 E-value=1.2e+02 Score=26.08 Aligned_cols=61 Identities=18% Similarity=0.015 Sum_probs=38.3
Q ss_pred HHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 254 AQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 254 a~v~~A~ergv~~~~~v~d~~~LPfpd~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
...+.+.+++.+..+...+.....-....+|+|++..- -...+.++.+.+.+.+.=+...+
T Consensus 18 ki~~~~~~~~~~~~v~~~~~~~~~~~~~~~Diil~~Pq-------v~~~~~~i~~~~~~~~~pv~~I~ 78 (96)
T cd05564 18 KMKKAAEKRGIDAEIEAVPESELEEYIDDADVVLLGPQ-------VRYMLDEVKKKAAEYGIPVAVID 78 (96)
T ss_pred HHHHHHHHCCCceEEEEecHHHHHHhcCCCCEEEEChh-------HHHHHHHHHHHhccCCCcEEEcC
Confidence 44566778888877777665555433456899997652 24567777776555555444444
No 408
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=22.27 E-value=3.6e+02 Score=28.23 Aligned_cols=34 Identities=21% Similarity=0.111 Sum_probs=25.3
Q ss_pred CCeeEEEecccccccccChHHHHHHHHHccc-CCcEEEEEeC
Q 009069 281 RAFDMAHCSRCLIPWGQYDGLYLIEVDRVLR-PGGYWILSGP 321 (544)
Q Consensus 281 ~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLK-PGG~Lvis~p 321 (544)
+.+|+|+.... ....+.++.+.|+ ++|.++..+.
T Consensus 252 ~~~d~vid~~g-------~~~~~~~~~~~l~~~~G~~v~~g~ 286 (365)
T cd05279 252 GGVDYAFEVIG-------SADTLKQALDATRLGGGTSVVVGV 286 (365)
T ss_pred CCCcEEEECCC-------CHHHHHHHHHHhccCCCEEEEEec
Confidence 46899885321 1357888999999 9999998764
No 409
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=22.17 E-value=4.8e+02 Score=27.48 Aligned_cols=32 Identities=13% Similarity=0.036 Sum_probs=23.5
Q ss_pred CeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 282 AFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 282 sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
.+|+|+... ....+.+..+.|+++|.++..+.
T Consensus 285 g~d~vid~~--------g~~~~~~~~~~l~~~G~~v~~g~ 316 (393)
T cd08246 285 DPDIVFEHP--------GRATFPTSVFVCDRGGMVVICAG 316 (393)
T ss_pred CCeEEEECC--------chHhHHHHHHHhccCCEEEEEcc
Confidence 588887532 12457788899999999998753
No 410
>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=22.07 E-value=7.7e+02 Score=24.32 Aligned_cols=93 Identities=13% Similarity=0.169 Sum_probs=47.4
Q ss_pred CCEEEEeCC--CCcHHHHHHhhC-CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccc--cCCCCCCCeeEEEeccccc
Q 009069 219 IRTAIDTGC--GVASWGAYLMSR-NILAVSFAPRDTHEAQVQFALERGVPALIGVMASI--RLPYPSRAFDMAHCSRCLI 293 (544)
Q Consensus 219 ~r~VLDIGC--GtG~~a~~La~~-~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~--~LPfpd~sFDlV~~~~~l~ 293 (544)
+.+||-.|+ +.|..+..+++. ++.++-++. . ...+++.+.+....+...... ......+.+|+|+....-
T Consensus 144 g~~vli~g~~g~~g~~~~~la~~~g~~v~~~~~-~---~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~- 218 (319)
T cd08267 144 GQRVLINGASGGVGTFAVQIAKALGAHVTGVCS-T---RNAELVRSLGADEVIDYTTEDFVALTAGGEKYDVIFDAVGN- 218 (319)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEeC-H---HHHHHHHHcCCCEeecCCCCCcchhccCCCCCcEEEECCCc-
Confidence 348999997 245566666654 665554432 1 334455555542222111000 111234568999864321
Q ss_pred ccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 294 PWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 294 h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
........+ ..|+++|.++..+.
T Consensus 219 ----~~~~~~~~~-~~l~~~g~~i~~g~ 241 (319)
T cd08267 219 ----SPFSLYRAS-LALKPGGRYVSVGG 241 (319)
T ss_pred ----hHHHHHHhh-hccCCCCEEEEecc
Confidence 112223333 34999999998754
No 411
>PF14314 Methyltrans_Mon: Virus-capping methyltransferase
Probab=21.99 E-value=2.2e+02 Score=33.36 Aligned_cols=42 Identities=26% Similarity=0.242 Sum_probs=33.2
Q ss_pred CCCcccHHHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhhC
Q 009069 195 TMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR 239 (544)
Q Consensus 195 ~~F~~ga~~~i~~L~~lL~l~~g~~r~VLDIGCGtG~~a~~La~~ 239 (544)
.|...|+...++.|...+.+... -+|-.|=|+|..++.|++.
T Consensus 302 ~Q~ATGAHYKlRsIL~~~~i~~~---d~l~~GDGSGGita~lLR~ 343 (675)
T PF14314_consen 302 FQLATGAHYKLRSILKNLNIKYR---DALCGGDGSGGITACLLRM 343 (675)
T ss_pred hcccccchhhHHHHHHhcCCCcc---eeEEEecCchHHHHHHHHh
Confidence 34667888888888887776654 4899999999999999875
No 412
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=21.98 E-value=1.3e+02 Score=32.20 Aligned_cols=96 Identities=11% Similarity=0.063 Sum_probs=46.1
Q ss_pred CCEEEEeCCC-CcHHHHHHhh-CC--cEEEeCCccchHHHHHHHH-HHcCCCeEEEEeccccCCCCCCCeeEEEeccccc
Q 009069 219 IRTAIDTGCG-VASWGAYLMS-RN--ILAVSFAPRDTHEAQVQFA-LERGVPALIGVMASIRLPYPSRAFDMAHCSRCLI 293 (544)
Q Consensus 219 ~r~VLDIGCG-tG~~a~~La~-~~--V~~vdisp~dls~a~v~~A-~ergv~~~~~v~d~~~LPfpd~sFDlV~~~~~l~ 293 (544)
..+|+=+|+| .|..++..+. .| |.++|.++. ..+.+ ...+..+.....+...+.-.-..+|+|+..-..
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~-----~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~~- 240 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGLGATVTILDINID-----RLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVLI- 240 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHH-----HHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEcccc-
Confidence 4569999998 4555555444 34 566666332 22222 222222111111111111011358999975422
Q ss_pred ccccChHHHHHHHHHcccCCcEEEEEe
Q 009069 294 PWGQYDGLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 294 h~~~d~~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
.-...+..+-.++.+.+|||+.++-.+
T Consensus 241 ~g~~~p~lit~~~l~~mk~g~vIvDva 267 (370)
T TIGR00518 241 PGAKAPKLVSNSLVAQMKPGAVIVDVA 267 (370)
T ss_pred CCCCCCcCcCHHHHhcCCCCCEEEEEe
Confidence 111112223466677789998887654
No 413
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=21.80 E-value=1.4e+02 Score=30.70 Aligned_cols=28 Identities=11% Similarity=0.259 Sum_probs=21.6
Q ss_pred CEEEEeCCCCcHHHHHHhhC---------CcEEEeCC
Q 009069 220 RTAIDTGCGVASWGAYLMSR---------NILAVSFA 247 (544)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~---------~V~~vdis 247 (544)
..++|+|||.|.++.++++. .+..+|-.
T Consensus 20 ~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~ 56 (259)
T PF05206_consen 20 SCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRA 56 (259)
T ss_pred CEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecC
Confidence 48999999999998888653 45666663
No 414
>PRK09548 PTS system ascorbate-specific transporter subunits IICB; Provisional
Probab=21.75 E-value=1.7e+02 Score=33.71 Aligned_cols=58 Identities=19% Similarity=0.330 Sum_probs=39.9
Q ss_pred CEEEEeCCCCcHHHHHHhhCCcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEecccc
Q 009069 220 RTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCL 292 (544)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~LPfpd~sFDlV~~~~~l 292 (544)
.+|| +-||+|.-+..+. .....+...++|+++.+.+.+....+-..+.+|+|+++.-+
T Consensus 507 mKIL-vaCGsGiGTStmv--------------a~kIkk~Lke~GI~veV~~~~Vsev~s~~~~aDIIVtt~~L 564 (602)
T PRK09548 507 VRIL-AVCGQGQGSSMMM--------------KMKIKKYLDKRGIPIIMDSCAVNDYKGKLETIDIIVCSKHL 564 (602)
T ss_pred cEEE-EECCCCchHHHHH--------------HHHHHHHHHHcCCCeEEEEechHhCcccCCCCCEEEEcccc
Confidence 3566 6788886444433 23334556678888888888887777666779999997743
No 415
>PRK06274 indolepyruvate oxidoreductase subunit B; Reviewed
Probab=21.67 E-value=3.8e+02 Score=25.65 Aligned_cols=33 Identities=15% Similarity=0.126 Sum_probs=23.8
Q ss_pred CCCeeEEEecccccccccChHHHHHHHHHcccCCcEEEEEeC
Q 009069 280 SRAFDMAHCSRCLIPWGQYDGLYLIEVDRVLRPGGYWILSGP 321 (544)
Q Consensus 280 d~sFDlV~~~~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~p 321 (544)
.+..|+++|.. +.. +.+....|||||.+++...
T Consensus 65 ~~~~D~lva~d--------~~~-~~~~~~~l~~gg~ii~ns~ 97 (197)
T PRK06274 65 EGQADLLLALE--------PAE-VARNLHFLKKGGKIIVNAY 97 (197)
T ss_pred CCCCCEEEEcC--------HHH-HHHHHhhcCCCcEEEEECC
Confidence 56899999854 222 3455667999999998753
No 416
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=21.43 E-value=1.8e+02 Score=31.56 Aligned_cols=51 Identities=18% Similarity=0.253 Sum_probs=37.3
Q ss_pred HHhcccCCCCCEEEEeCCCCcHHHHHHhhC--CcEEEeCCccchHHHHHHHHHHc
Q 009069 210 KLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALER 262 (544)
Q Consensus 210 ~lL~l~~g~~r~VLDIGCGtG~~a~~La~~--~V~~vdisp~dls~a~v~~A~er 262 (544)
+.|++.+++ +||-|..|......+|.+. .|++||++|..++-..++.|.-+
T Consensus 29 ~aL~i~~~d--~vl~ItSaG~N~L~yL~~~P~~I~aVDlNp~Q~aLleLKlAair 81 (380)
T PF11899_consen 29 EALNIGPDD--RVLTITSAGCNALDYLLAGPKRIHAVDLNPAQNALLELKLAAIR 81 (380)
T ss_pred HHhCCCCCC--eEEEEccCCchHHHHHhcCCceEEEEeCCHHHHHHHHHHHHHHH
Confidence 556666666 8999988888777777654 89999998876665555555433
No 417
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=21.06 E-value=88 Score=26.78 Aligned_cols=32 Identities=3% Similarity=-0.021 Sum_probs=14.4
Q ss_pred HHHcCCCeEEEEeccccCCCCCCCeeEEEecc
Q 009069 259 ALERGVPALIGVMASIRLPYPSRAFDMAHCSR 290 (544)
Q Consensus 259 A~ergv~~~~~v~d~~~LPfpd~sFDlV~~~~ 290 (544)
..++|+++.+...+...++-....+|+|++..
T Consensus 27 l~~~gi~~~v~~~~~~e~~~~~~~~D~iv~t~ 58 (94)
T PRK10310 27 CQSHNIPVELIQCRVNEIETYMDGVHLICTTA 58 (94)
T ss_pred HHHCCCeEEEEEecHHHHhhhcCCCCEEEECC
Confidence 33455555544444333321113456666554
No 418
>PRK10299 PhoPQ regulatory protein; Provisional
Probab=20.93 E-value=1e+02 Score=23.43 Aligned_cols=22 Identities=9% Similarity=0.326 Sum_probs=13.2
Q ss_pred ccchHHHHHHHHHHHHHHHhhh
Q 009069 19 HANLYSITLVTILCTIFYLAGM 40 (544)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~ 40 (544)
+-+...++++++.|.|+|.+..
T Consensus 3 k~rwiili~iv~~Cl~lyl~al 24 (47)
T PRK10299 3 KFRWVVLVVVVLACLLLWAQVF 24 (47)
T ss_pred eeeehHHHHHHHHHHHHHHHHH
Confidence 3344555556666888776654
No 419
>TIGR02175 PorC_KorC 2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes the gamma subunit. In Pyrococcus furious, enzymes active on pyruvate and 2-ketoisovalerate share a common gamma subunit.
Probab=20.66 E-value=4e+02 Score=25.24 Aligned_cols=35 Identities=17% Similarity=0.060 Sum_probs=23.6
Q ss_pred CCCCCCeeEEEecccccccccChHHHHH--HHHHcccCCcEEEEEe
Q 009069 277 PYPSRAFDMAHCSRCLIPWGQYDGLYLI--EVDRVLRPGGYWILSG 320 (544)
Q Consensus 277 Pfpd~sFDlV~~~~~l~h~~~d~~~~L~--Ei~RVLKPGG~Lvis~ 320 (544)
..+-...|+++|.. ...+. +..+.|+|||.+++..
T Consensus 61 ~s~~~~~D~lva~~---------~~~~~~~~~~~~l~~gg~ii~d~ 97 (177)
T TIGR02175 61 HSQIYEPDYVVVLD---------PTLLKTVNVTAGLKEDGILIVNT 97 (177)
T ss_pred CCccCCCCEEEEcC---------HHHhCccchhhCcCCCeEEEEEC
Confidence 34556889998744 12332 2556799999999874
No 420
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=20.56 E-value=2e+02 Score=28.98 Aligned_cols=48 Identities=42% Similarity=0.671 Sum_probs=0.0
Q ss_pred HHHHHHHHcccCCcEEEEEeCCCCccccccCCCcchhhhHhhhhhHHHHHHhhcceeeeeeccEEEEecc
Q 009069 301 LYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQKKDLAIWQKP 370 (544)
Q Consensus 301 ~~L~Ei~RVLKPGG~Lvis~pp~~w~~~~~~w~~t~e~L~~~~~~ie~la~~l~w~~v~~~~~~aIwqKP 370 (544)
..+.++.|+|+++|.+++..+... ...+...++..+|..... .||.|+
T Consensus 80 ~~~~~~~rvl~~~~~~~v~~~~~~------------------~~~~~~~~~~~gf~~~~~----iiw~k~ 127 (302)
T COG0863 80 QWLAEQKRVLKPGGSLYVIDPFSN------------------LARIEDIAKKLGFEILGK----IIWKKP 127 (302)
T ss_pred HHHHHhhheecCCCEEEEECCchh------------------hhHHHHHHHhCCCeEeee----EEEeCC
No 421
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=20.23 E-value=1.4e+02 Score=32.01 Aligned_cols=49 Identities=29% Similarity=0.373 Sum_probs=27.7
Q ss_pred HHHHHHHHHhccc---CCCCCEEEEeCCCCcHHHHHHhhC----CcEEEeCCccch
Q 009069 203 AYIDDIGKLINLK---DGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDT 251 (544)
Q Consensus 203 ~~i~~L~~lL~l~---~g~~r~VLDIGCGtG~~a~~La~~----~V~~vdisp~dl 251 (544)
.|+.-|.++|... .+..++.+|||.|+--+-..+..+ ...++++.....
T Consensus 84 nYihwI~DLLss~q~~k~~i~~GiDIgtgasci~~llg~rq~n~~f~~teidd~s~ 139 (419)
T KOG2912|consen 84 NYIHWIEDLLSSQQSDKSTIRRGIDIGTGASCIYPLLGARQNNWYFLATEIDDMSF 139 (419)
T ss_pred hhHHHHHHHhhcccCCCcceeeeeeccCchhhhHHhhhchhccceeeeeecccccc
Confidence 3555555666433 233445799999887555444333 456666644333
No 422
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=20.05 E-value=6.7e+02 Score=25.10 Aligned_cols=91 Identities=21% Similarity=0.264 Sum_probs=50.1
Q ss_pred CCEEEEeCC--CCcHHHHHHhhC-CcEEEeCCccchHHHHHHHHHHcCCCeEEEEeccccC------CCCCCCeeEEEec
Q 009069 219 IRTAIDTGC--GVASWGAYLMSR-NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRL------PYPSRAFDMAHCS 289 (544)
Q Consensus 219 ~r~VLDIGC--GtG~~a~~La~~-~V~~vdisp~dls~a~v~~A~ergv~~~~~v~d~~~L------Pfpd~sFDlV~~~ 289 (544)
+.+||=.|+ +.|..+..+++. ++..+-++. +....+++.+.+....+...+.... ......+|+++..
T Consensus 141 ~~~vlI~ga~g~~g~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~ 217 (334)
T PTZ00354 141 GQSVLIHAGASGVGTAAAQLAEKYGAATIITTS---SEEKVDFCKKLAAIILIRYPDEEGFAPKVKKLTGEKGVNLVLDC 217 (334)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCcEEEecCChhHHHHHHHHHhCCCCceEEEEC
Confidence 347887774 456666666654 554332321 2344555555554322221110000 0123568999853
Q ss_pred ccccccccChHHHHHHHHHcccCCcEEEEEe
Q 009069 290 RCLIPWGQYDGLYLIEVDRVLRPGGYWILSG 320 (544)
Q Consensus 290 ~~l~h~~~d~~~~L~Ei~RVLKPGG~Lvis~ 320 (544)
. ....+.++.+.|+++|.++..+
T Consensus 218 ~--------~~~~~~~~~~~l~~~g~~i~~~ 240 (334)
T PTZ00354 218 V--------GGSYLSETAEVLAVDGKWIVYG 240 (334)
T ss_pred C--------chHHHHHHHHHhccCCeEEEEe
Confidence 2 1357788999999999999865
Done!