Query 009071
Match_columns 544
No_of_seqs 371 out of 1484
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 18:10:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009071.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009071hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hyg_A Putative uncharacterize 99.9 1E-26 3.5E-31 231.4 8.2 175 328-517 107-297 (301)
2 3icu_A E3 ubiquitin-protein li 99.9 6.6E-21 2.3E-25 183.2 16.8 136 48-192 35-193 (194)
3 3iib_A Peptidase M28; YP_92679 99.0 1.8E-09 6E-14 115.9 13.4 143 41-186 58-225 (444)
4 2ek8_A Aminopeptidase; metallo 98.9 1.8E-08 6E-13 107.2 14.2 89 82-174 92-181 (421)
5 3fed_A Glutamate carboxypeptid 98.5 3.6E-07 1.2E-11 103.3 10.1 93 82-176 126-268 (707)
6 3kas_A Transferrin receptor pr 98.4 6.1E-07 2.1E-11 100.4 9.1 92 82-175 107-230 (640)
7 3i6s_A Subtilisin-like proteas 98.2 1.8E-06 6.1E-11 96.9 9.3 93 83-184 257-354 (649)
8 1xf1_A C5A peptidase, SCP; hyd 98.0 1.7E-05 6E-10 92.2 11.2 92 84-186 261-353 (926)
9 1y9z_A Alkaline serine proteas 97.9 2.2E-05 7.5E-10 83.8 8.8 84 94-184 258-356 (441)
10 2kr6_A Presenilin-1; protease, 96.3 0.0047 1.6E-07 57.5 5.6 65 433-508 88-155 (176)
11 3vta_A Cucumisin; subtilisin-l 90.3 0.37 1.3E-05 53.5 6.8 73 94-179 268-343 (621)
No 1
>4hyg_A Putative uncharacterized protein; protease, membrane protein; 3.32A {Methanoculleus marisnigri JR1} PDB: 4hyc_A 4hyd_A
Probab=99.93 E-value=1e-26 Score=231.42 Aligned_cols=175 Identities=25% Similarity=0.307 Sum_probs=123.1
Q ss_pred hhhhHHHhhhhhheeecCccchhHHHHHHHHHHHHHHHhccc--CchhHHHHHHHHHHHhhhheeeeccccccceeEEEe
Q 009071 328 VTPFCIAFAVVWAIYRKVSFAWIGQDILGIALIITVLQIVHI--PNLKVGTVLLSCAFMYDIFWVFVSKKLFHESVMIVV 405 (544)
Q Consensus 328 ~~~~~~~~~~~w~~~~~~~~~W~~~nilgi~~~~~~i~~~~l--~s~k~~~ilL~~lf~YDif~Vf~sp~~~~~sVMv~V 405 (544)
..+.++++++.++.|. +|+..|+.|++++..+...+.+ ..+ .+.+||+++++||++|||+|+ +|+++
T Consensus 107 a~~~a~~~~~ll~~yp----eWyvid~~Gi~~~aG~aalFGISl~~~-paiiLL~~LavYDaISVy~Tk------HMvtL 175 (301)
T 4hyg_A 107 TLIGAVAVTALLYLYP----EWYVIDILGVLISAGVASIFGISLEPL-PVLVLLVLLAVYDAISVYRTK------HMITL 175 (301)
T ss_dssp HHHHHHHHHHHHHTCC----CSSHHHHHHHHHHHHHHHHHHHSSCHH-HHHHHHHHHHHHHHHHHHHHH------HHHHH
T ss_pred HHHHHHHHHHHHHhcc----cHHHhhHHHHHHHhhHHHHHhhccchH-HHHHHHHHHHHHHhhhccCch------HHHHH
Confidence 3344666666665555 4999999999999998776555 666 899999999999999999776 99999
Q ss_pred cccCCCCCCCCCEEEEeccccC-------------CCCCeeeecCCCchhhHHHHHHHHhhcccccc-cccchhHHHHHH
Q 009071 406 ARGDKSGEDGIPMLLKIPRMFD-------------PWGGYSIIGFGDILLPGLIIAFSLRYDWLANK-SLQAGYFLWAML 471 (544)
Q Consensus 406 A~~~~~~~~~~P~~l~~P~~~~-------------~~~~~s~LGlGDIviPGl~ia~~~rfD~~~~~-~~~~~YF~~~~i 471 (544)
|+|.. +.++|+++++|+..+ .+++..++|+||+++|+++++.+.+||..... ...+.-++.+++
T Consensus 176 Aegvm--dlk~PilfViP~~~~ys~~~~~~~~~~~~er~a~~iGlGD~viP~ilVvSa~~F~~~~~~~g~~~lPalgA~~ 253 (301)
T 4hyg_A 176 AEGVL--ETKAPIMVVVPKRADYSFRKEGLNISEGEERGAFVMGMGDLIMPSILVVSSHVFVDAPAVLWTLSAPTLGAMV 253 (301)
T ss_dssp TTTC----------------------------------CHHHHHHHHHHHHHHHHHHHHCC---------CCCSCHHHHH
T ss_pred HHhhh--ccCCceEEEEecCCCccccccccccccccccceeEecCcchhHHHHHHHHHHHHcccccccccccchHHHHHH
Confidence 99964 257999999998422 13668899999999999999999999975441 101123889999
Q ss_pred HHHHHHHHHHHHHHhhcCCCcceecccchhhhHHHHHHHhhccchh
Q 009071 472 AYGLGLLITYVALNLMDGHGQPALLYIVPFTLGTFLALGKKRGDLR 517 (544)
Q Consensus 472 gY~~GL~~t~~~~~~~~~~~QPALlYlvP~~l~~~~~~a~~rgel~ 517 (544)
||.+||.+++.. ++.+++||+|.||.+.++++.++.++.+||++
T Consensus 254 Gt~~Gl~vLl~~--V~~grpqaGLP~LN~GaI~Gfllg~l~~G~~~ 297 (301)
T 4hyg_A 254 GSLVGLAVLLYF--VNKGNPQAGLPPLNGGAILGFLVGAALAGSFS 297 (301)
T ss_dssp HHHHHHHHHHHH--HTSSSCCCSHHHHHHHHHHHHHHTTSCC----
T ss_pred HHHHHHHHHHHH--HHcCCCCCCCCccchHHHHHHHHHHHHhceec
Confidence 999999999663 23589999999999999999999999999987
No 2
>3icu_A E3 ubiquitin-protein ligase RNF128; E3 ligase, energy, PA domain, transmembrane,protein turnover conjugation pathway; HET: NAG; 2.10A {Homo sapiens}
Probab=99.86 E-value=6.6e-21 Score=183.23 Aligned_cols=136 Identities=18% Similarity=0.237 Sum_probs=106.6
Q ss_pred EEEEEEeeeC--C--ccceeEEecccCcCCcccccccCcceEEEeec---CCCCCCCCCCC---C-------CcceEEEE
Q 009071 48 VLVKVQTWID--G--IENEEFVGVGARFGTTIVSKEKNANQIHLTLS---HPRDCCSMPKH---K-------YAGDVIMV 110 (544)
Q Consensus 48 ~lv~v~~~~~--G--~e~~~~~~~~A~FG~~lp~~~~~~~~~~Lv~~---~p~dgC~~~~~---~-------l~g~IaLV 110 (544)
.+|-+ +|.| | +...++.+.+|+||..+|... .++.++.+ ++.+||++.+. . .+|||+||
T Consensus 35 A~vn~-sy~d~~~~~n~t~~~~~e~a~FG~~~p~~~---v~G~lv~~~~~~~~~GC~~~~~~~~~~~~~~~~~~gkIaLV 110 (194)
T 3icu_A 35 AYLNV-SWRVPHTGVNRTVWELSEEGVYGQDSPLEP---VAGVLVPPDGPGALNACNPHTNFTVPTVWGSTVQVSWLALI 110 (194)
T ss_dssp EEEEE-EEECCSSCTTCEEEEEEEEEEECTTSCCSC---EEEEEECBSSTTCTTCCSTTCCBCCCBCTTSSCBCCEEEEE
T ss_pred EEEEE-EEECCCCCccceeeecccccccCCCCCCCC---cEEEEEecCCCCCcCCCCCCccccCCcccccccCCCeEEEE
Confidence 44444 4443 3 455668899999999998754 66777765 37899998762 1 36899999
Q ss_pred ecCC-CCHHHHHHHHHHcCCcEEEEEeCCC---cccccccCCCCCCCCccceEEEechhhhHHHHHHHhccceEEEEeec
Q 009071 111 DRGN-CKFTTKANIAEAAGASALLIINNQK---ELYKMVCDPDETDLDIHIPAVMMPQDAGASLEKMLLNTSSVSVQLYS 186 (544)
Q Consensus 111 ~RG~-CsF~~Ka~nAq~aGA~avIV~N~~~---~l~~M~~~~~~~~~~i~IPvv~Is~~~G~~L~~~L~~G~~V~V~l~~ 186 (544)
+||+ |+|.+|++|||++||+|+||||+++ ....|... ...+||++||++++|+.|+++|++|.+|++++..
T Consensus 111 ~RG~~CsF~~Kv~nAq~aGA~avIIyNn~~~g~~~~~m~~~-----~~~~IPsv~Is~~~G~~L~~~L~~G~~Vtvti~v 185 (194)
T 3icu_A 111 QRGGGCTFADKIHLAYERGASGAVIFNFPGTRNEVIPMSHP-----GAVDIVAIMIGNLKGTKILQSIQRGIQVTMVIEV 185 (194)
T ss_dssp ESCTTCCHHHHHHHHHHTTCSEEEEECCTTCTTCCCCCCCT-----TCCSSEEEEECHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred ECCCCcCHHHHHHHHHHCCCcEEEEEeCCCCCCceeeecCC-----CCCceeEEEECHHHHHHHHHHHHCCCeEEEEEEC
Confidence 9999 9999999999999999999999852 34677532 2357999999999999999999999998888753
Q ss_pred --CCCccc
Q 009071 187 --PRRPVV 192 (544)
Q Consensus 187 --p~~p~v 192 (544)
.+.|++
T Consensus 186 g~~h~pw~ 193 (194)
T 3icu_A 186 GKKHGPWV 193 (194)
T ss_dssp EEEECCCC
T ss_pred CCccCCCC
Confidence 344554
No 3
>3iib_A Peptidase M28; YP_926796.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.70A {Shewanella amazonensis SB2B}
Probab=99.01 E-value=1.8e-09 Score=115.94 Aligned_cols=143 Identities=13% Similarity=0.125 Sum_probs=95.8
Q ss_pred CCCCc-ceEEEEEEeeeCCccceeEEe--------cccCcCCcccccccCcceEEEeecCCCCCCCCCC-CCCcceEEEE
Q 009071 41 PGCEN-DFVLVKVQTWIDGIENEEFVG--------VGARFGTTIVSKEKNANQIHLTLSHPRDCCSMPK-HKYAGDVIMV 110 (544)
Q Consensus 41 p~c~~-~f~lv~v~~~~~G~e~~~~~~--------~~A~FG~~lp~~~~~~~~~~Lv~~~p~dgC~~~~-~~l~g~IaLV 110 (544)
.|+++ ..+-+.++.|..|.+..+..+ .+..+++. ++..+++++++.++..++|.... .+++||||||
T Consensus 58 ~G~~~v~~q~f~~~~w~~~~~~~~~~~~~~~~~~~~~l~~s~~---tp~~~vta~lV~v~~~~~~~~~~~~dvkGKIVlv 134 (444)
T 3iib_A 58 LGFDRVYKEPVTVPVWRRGIAKASILSPFPQPLVVTALGGSIA---TPAQGLSATIVRFDTLQDLQNAEAGSLNDKIAFI 134 (444)
T ss_dssp TTCSEEEEEEEEEEEEEEEEEEEEEEESSCEEECEEECBTCCC---CCTTCEEEEEEEESSHHHHHTSCTTTTTTCEEEE
T ss_pred cCCCceEeeeEEeccEEecceEEEEeCCCCceEEEEeccCCCC---CCCCCeEEEEEecCCHHHHhhccccccCccEEEE
Confidence 34533 234556677876665433322 22223322 23456899999887666676543 5899999999
Q ss_pred ecCCCC---------HHHHH----HHHHHcCCcEEEEEeCCCcccccccCC--CCCCCCccceEEEechhhhHHHHHHHh
Q 009071 111 DRGNCK---------FTTKA----NIAEAAGASALLIINNQKELYKMVCDP--DETDLDIHIPAVMMPQDAGASLEKMLL 175 (544)
Q Consensus 111 ~RG~Cs---------F~~Ka----~nAq~aGA~avIV~N~~~~l~~M~~~~--~~~~~~i~IPvv~Is~~~G~~L~~~L~ 175 (544)
+||.|. |..|. .+|+++||+|+|++|+.++...+.+.+ ........||++.|++++|+.|+++++
T Consensus 135 ~~~~~~~~~~~~y~~~~~kr~~~a~~A~~aGA~avIi~~~~~~~~~~~~tg~~~~~~~~~~IP~~~Is~~da~~L~~~l~ 214 (444)
T 3iib_A 135 DAKTERHRDGKGYGQTASGRSRGAVAAAEKGAVGIIIRSIGTDHDRMAHTGMMRYEEGVTAIPAAAISNPDADLINAMLK 214 (444)
T ss_dssp CCCCCCCTTCHHHHHHHHHHHHHHHHHHHTTCSEEEEECSCSCCSSCCCCCBCCCCTTSCCCCEEEECHHHHHHHHHHHT
T ss_pred eCCCCCCcccccccchhhhhhhHHHHHHHCCCeEEEEEccCCcccccccCCccccCCCCCCCCeEEecHHHHHHHHHHHh
Confidence 999995 67774 579999999999999865322221111 011134689999999999999999999
Q ss_pred ccceEEEEeec
Q 009071 176 NTSSVSVQLYS 186 (544)
Q Consensus 176 ~G~~V~V~l~~ 186 (544)
+|+++++++..
T Consensus 215 ~g~~~~v~l~~ 225 (444)
T 3iib_A 215 RDKEVVISLEL 225 (444)
T ss_dssp TTCCCEEEEEE
T ss_pred CCCCeEEEEEE
Confidence 88776666653
No 4
>2ek8_A Aminopeptidase; metalloproteinase, hydrolase; 1.80A {Aneurinibacillus SP} PDB: 2ek9_A*
Probab=98.86 E-value=1.8e-08 Score=107.16 Aligned_cols=89 Identities=21% Similarity=0.249 Sum_probs=67.4
Q ss_pred cceEEEeecCCCCCCCCCCC-CCcceEEEEecCCCCHHHHHHHHHHcCCcEEEEEeCCCcccccccCCCCCCCCccceEE
Q 009071 82 ANQIHLTLSHPRDCCSMPKH-KYAGDVIMVDRGNCKFTTKANIAEAAGASALLIINNQKELYKMVCDPDETDLDIHIPAV 160 (544)
Q Consensus 82 ~~~~~Lv~~~p~dgC~~~~~-~l~g~IaLV~RG~CsF~~Ka~nAq~aGA~avIV~N~~~~l~~M~~~~~~~~~~i~IPvv 160 (544)
..+++++.++.. ..+..+. +++|||||++||+|+|.+|+++|+++||+|+||||+.+......- +......||++
T Consensus 92 ~v~a~lv~~~~G-~~~D~~~~dv~GkIvlv~~g~~~~~~k~~~A~~~GA~gvIi~~~~~~~~~g~~---~~~~~~~IP~~ 167 (421)
T 2ek8_A 92 DVTAELVYVGLG-TTADVAGKDLNGKIALIQRGNISFADKVRNAAKQGAKAVIIYNNTDGKLNGTL---GGSDASFVAAV 167 (421)
T ss_dssp EEEEEEEECTTC-CTTTTTTSCCTTSEEEEECCSSCHHHHHHHHHHTTCSEEEEECSSSSCCCCBC---SSCCTTCCEEE
T ss_pred CcceEEEECCCC-ChhhcCCCCcCceEEEEeCCCCCHHHHHHHHHHCCCeEEEEEeCCCccccccc---CCCCCCCccEE
Confidence 467788665432 2222333 799999999999999999999999999999999999754322111 11135689999
Q ss_pred EechhhhHHHHHHH
Q 009071 161 MMPQDAGASLEKML 174 (544)
Q Consensus 161 ~Is~~~G~~L~~~L 174 (544)
.|++++++.|++.+
T Consensus 168 ~Is~~~a~~L~~~l 181 (421)
T 2ek8_A 168 GITKQEGDALAANL 181 (421)
T ss_dssp EECHHHHHHHHHHH
T ss_pred EeCHHHHHHHHHHh
Confidence 99999999999988
No 5
>3fed_A Glutamate carboxypeptidase III; metallopeptidase, bimetallic active site, N-glycosylation, C cation, chloride anion, zinc IONS, dipept glycoprotein; HET: NAG BIX; 1.29A {Homo sapiens} PDB: 3fec_A* 3fee_A* 3ff3_A* 2c6c_A* 2c6g_A* 2c6p_A* 2cij_A* 2jbj_A* 2jbk_A* 3rbu_A* 3bi1_A* 2oot_A* 2pvv_A* 2pvw_A* 2xei_A* 2or4_A* 3bi0_A* 3bhx_A* 3d7d_A* 3d7f_A* ...
Probab=98.46 E-value=3.6e-07 Score=103.29 Aligned_cols=93 Identities=15% Similarity=0.100 Sum_probs=67.2
Q ss_pred cceEEEeecCCCCCCCC-C-------CCCCcceEEEEecCCCCHHHHHHHHHHcCCcEEEEEeCCCcc-------cc---
Q 009071 82 ANQIHLTLSHPRDCCSM-P-------KHKYAGDVIMVDRGNCKFTTKANIAEAAGASALLIINNQKEL-------YK--- 143 (544)
Q Consensus 82 ~~~~~Lv~~~p~dgC~~-~-------~~~l~g~IaLV~RG~CsF~~Ka~nAq~aGA~avIV~N~~~~l-------~~--- 143 (544)
.++++++.++ .||.. . ..+++|||||++||+|+|.+|+++||++||+|+||||+..+. ++
T Consensus 126 ~v~g~lV~v~--~G~~~Df~~L~~~~~~~v~GkIvlv~~G~~~~~~Kv~~A~~~GA~gviiy~dp~d~~~~g~~~yP~~~ 203 (707)
T 3fed_A 126 MPEGDLVYVN--YARTEDFFKLEREMGINCTGKIVIARYGKIFRGNKVKNAMLAGAIGIILYSDPADYFAPEVQPYPKGW 203 (707)
T ss_dssp CCEECEEECT--TCCHHHHHHHHHTSCCCCTTCEEEEECCSSCHHHHHHHHHHTTCSEEEEECCHHHHCCTTCCBTTTSS
T ss_pred ceEEEEEEec--CCchhhHHHHHhccCCCCCCeEEEEECCCCCHhHHHHHHHHCCCEEEEEEcCchhccccccccCCCCc
Confidence 4678888774 46631 1 236899999999999999999999999999999999973210 00
Q ss_pred --------------ccc-CCCCC-----------------CCCccceEEEechhhhHHHHHHHhc
Q 009071 144 --------------MVC-DPDET-----------------DLDIHIPAVMMPQDAGASLEKMLLN 176 (544)
Q Consensus 144 --------------M~~-~~~~~-----------------~~~i~IPvv~Is~~~G~~L~~~L~~ 176 (544)
+.+ +|.-+ ....+||++-|++++|+.|++.+..
T Consensus 204 ~~p~~~vqrGsv~~~~~~GDp~TPG~ps~~~~~r~~~~~~~~~p~IP~~pIS~~da~~Ll~~l~g 268 (707)
T 3fed_A 204 NLPGTAAQRGNVLNLNGAGDPLTPGYPAKEYTFRLDVEEGVGIPRIPVHPIGYNDAEILLRYLGG 268 (707)
T ss_dssp BCCTTCCCCCCCCCCTTCCSTTCTTSCCCTTCCCCCGGGCTTCCSSCEEEECHHHHHHHHHTBCB
T ss_pred cCCCccccccceecccCCCCCCCCCCcccCCCcccChhhccCCCCCCeEecCHHHHHHHHHHhcC
Confidence 000 11000 0125899999999999999998853
No 6
>3kas_A Transferrin receptor protein 1; transferrin receptor 1, arenavirus, cell MEMB disulfide bond, endocytosis, HOST-virus inter receptor, secreted, transmembrane; HET: NAG FUC BMA MAN; 2.40A {Homo sapiens} PDB: 1de4_C* 3s9l_A* 3s9m_A* 3s9n_A* 1cx8_A* 1suv_A 2nsu_A
Probab=98.37 E-value=6.1e-07 Score=100.37 Aligned_cols=92 Identities=17% Similarity=0.151 Sum_probs=65.7
Q ss_pred cceEEEeecCCCCCCCC-CC---CCCcceEEEEecCCCCHHHHHHHHHHcCCcEEEEEeCCCcc-c-----------ccc
Q 009071 82 ANQIHLTLSHPRDCCSM-PK---HKYAGDVIMVDRGNCKFTTKANIAEAAGASALLIINNQKEL-Y-----------KMV 145 (544)
Q Consensus 82 ~~~~~Lv~~~p~dgC~~-~~---~~l~g~IaLV~RG~CsF~~Ka~nAq~aGA~avIV~N~~~~l-~-----------~M~ 145 (544)
.++++++.++ .||.. .+ .+++|||||++||+|+|.+|+++|+++||+|+||||+..+. . ...
T Consensus 107 ~v~g~lV~vg--~G~~~D~~~l~vdv~GkIvlv~~g~~~~~~K~~~A~~~GA~gvii~~~~~~~~~~~~~~~~~G~~~~~ 184 (640)
T 3kas_A 107 TVTGKLVHAN--FGTKKDFEDLYTPVNGSIVIVRAGKITFAEKVANAESLNAIGVLIYMDQTKFPIVNAELSFFGHAHLG 184 (640)
T ss_dssp EEEECEEECT--TCCHHHHHTCSSCCTTSEEEEESCSSCHHHHHHHHHTTTCSEEEEECCTTTCCCSCTTCCCCEECCSS
T ss_pred ceEEEEEEec--CCChhhHHHhhcccCCcEEEEecCCCCHHHHHHHHHHCCCeEEEEEeccccccccccccccccccccC
Confidence 3567787764 45532 11 27899999999999999999999999999999999986421 0 000
Q ss_pred cCCCC----------------CCCCccceEEEechhhhHHHHHHHh
Q 009071 146 CDPDE----------------TDLDIHIPAVMMPQDAGASLEKMLL 175 (544)
Q Consensus 146 ~~~~~----------------~~~~i~IPvv~Is~~~G~~L~~~L~ 175 (544)
.++.. ......||++-|++++|+.|.+.+.
T Consensus 185 ~Gdp~tpg~ps~~~~~~~~~~~~~~p~IP~~~Is~~~a~~Ll~~l~ 230 (640)
T 3kas_A 185 TGDPYTPGFPSFNHTQFPPSRSSGLPNIPVQTISRAAAEKLFGNME 230 (640)
T ss_dssp SSCSCCCSSCC---CCCCCCSSCCCCSSCEEECCHHHHHHHHTTEE
T ss_pred CCCCCCCCcccccccccccccccCCCCCCEEecCHHHHHHHHHHcc
Confidence 00000 0112479999999999999988764
No 7
>3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A*
Probab=98.25 E-value=1.8e-06 Score=96.86 Aligned_cols=93 Identities=12% Similarity=0.161 Sum_probs=75.7
Q ss_pred ceEEEeecCCCCCCCCCC---CC--CcceEEEEecCCCCHHHHHHHHHHcCCcEEEEEeCCCcccccccCCCCCCCCccc
Q 009071 83 NQIHLTLSHPRDCCSMPK---HK--YAGDVIMVDRGNCKFTTKANIAEAAGASALLIINNQKELYKMVCDPDETDLDIHI 157 (544)
Q Consensus 83 ~~~~Lv~~~p~dgC~~~~---~~--l~g~IaLV~RG~CsF~~Ka~nAq~aGA~avIV~N~~~~l~~M~~~~~~~~~~i~I 157 (544)
...+++.....+.|.+.. .. ++|||+|++||.|++.+|..+++++||.++|++|+.+.... ....+
T Consensus 257 ~~~plv~~~~~~~C~~~~l~~~~vdl~GkIvlc~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~---------~~~~~ 327 (649)
T 3i6s_A 257 RDSPVIYNKTLSDCSSEELLSQVENPENTIVICDDNGDFSDQMRIITRARLKAAIFISEDPGVFRS---------ATFPN 327 (649)
T ss_dssp EEEEEECCTTTTTCCCHHHHTTSSSGGGCEEEECCCSCHHHHHHHHHHHTCSEEEEECCCGGGGGC---------CCCCS
T ss_pred cceeeEecccccccccccccccccccCCcEEEEeCCCccHHHHHHHHHhcCceEEEEecCcccccc---------ccCcC
Confidence 457787777778998743 33 49999999999999999999999999999999999732211 23478
Q ss_pred eEEEechhhhHHHHHHHhccceEEEEe
Q 009071 158 PAVMMPQDAGASLEKMLLNTSSVSVQL 184 (544)
Q Consensus 158 Pvv~Is~~~G~~L~~~L~~G~~V~V~l 184 (544)
|+++|++++|+.|++.++++++.++++
T Consensus 328 P~~~v~~~~g~~i~~yi~s~~~~~a~i 354 (649)
T 3i6s_A 328 PGVVVNKKEGKQVINYVKNSVTPTATI 354 (649)
T ss_dssp CEEEECHHHHHHHHHHHHTCSSCEEEE
T ss_pred CEEEEcHHHHHHHHHHHhcCCCceEEE
Confidence 999999999999999999877655554
No 8
>1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A*
Probab=98.00 E-value=1.7e-05 Score=92.24 Aligned_cols=92 Identities=18% Similarity=0.332 Sum_probs=69.8
Q ss_pred eEEEeecCCCCCCCCCC-CCCcceEEEEecCCCCHHHHHHHHHHcCCcEEEEEeCCCcccccccCCCCCCCCccceEEEe
Q 009071 84 QIHLTLSHPRDCCSMPK-HKYAGDVIMVDRGNCKFTTKANIAEAAGASALLIINNQKELYKMVCDPDETDLDIHIPAVMM 162 (544)
Q Consensus 84 ~~~Lv~~~p~dgC~~~~-~~l~g~IaLV~RG~CsF~~Ka~nAq~aGA~avIV~N~~~~l~~M~~~~~~~~~~i~IPvv~I 162 (544)
..+++.. .++|.+.. .+++|||+|++||.|+|.+|+.+++++||.++|++|+......+.. .....+|+++|
T Consensus 261 ~~~lv~~--~~g~~~~~~~~v~Gkivl~~rg~~~~~~k~~~~~~~Ga~gvi~~n~~~~~~~~~~-----~~~~~iP~~~i 333 (926)
T 1xf1_A 261 AYDYAYA--NRGTKEDDFKDVKGKIALIERGDIDFKDKIAKAKKAGAVGVLIYDNQDKGFPIEL-----PNVDQMPAAFI 333 (926)
T ss_dssp CEEEEEC--TTSCSTTTTTTCTTSEEEEECCSSCHHHHHHHHHHTTCSEEEEECSSTTCCCEEC-----CCSTTCCEEEE
T ss_pred eEEEEEC--CCCCCccchhhcCCeEEEEECCCCCHHHHHHHHHhCCCcEEEEEecCCCCccccc-----CccccccEEEE
Confidence 4566554 35786443 5799999999999999999999999999999999998754222211 12457999999
Q ss_pred chhhhHHHHHHHhccceEEEEeec
Q 009071 163 PQDAGASLEKMLLNTSSVSVQLYS 186 (544)
Q Consensus 163 s~~~G~~L~~~L~~G~~V~V~l~~ 186 (544)
++++|+.|+. +...++++..
T Consensus 334 ~~~~g~~l~~----~~~~ti~~~~ 353 (926)
T 1xf1_A 334 SRKDGLLLKD----NPQKTITFNA 353 (926)
T ss_dssp CHHHHHHHHH----CSSCEEEECS
T ss_pred eHHHHHHHHh----CCceEEEecc
Confidence 9999998874 4556666643
No 9
>1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A*
Probab=97.89 E-value=2.2e-05 Score=83.84 Aligned_cols=84 Identities=20% Similarity=0.361 Sum_probs=64.7
Q ss_pred CCCCCCC-----CCCcceEEEEecCCC-----CHHHHHHHHHHcCCcEEEEEeCCCcc-----cccccCCCCCCCCccce
Q 009071 94 DCCSMPK-----HKYAGDVIMVDRGNC-----KFTTKANIAEAAGASALLIINNQKEL-----YKMVCDPDETDLDIHIP 158 (544)
Q Consensus 94 dgC~~~~-----~~l~g~IaLV~RG~C-----sF~~Ka~nAq~aGA~avIV~N~~~~l-----~~M~~~~~~~~~~i~IP 158 (544)
++|.+.+ .+++|||+|++||+| .+.+|+++++++||+++|+||+.+.. +.+ +......||
T Consensus 258 ~~C~~~~~~~~~~~~~gkivl~~rg~~~~~~~~~~~~~~~~~~aGa~gvii~~~~~~~g~~~~~~~-----~~~~~~~~p 332 (441)
T 1y9z_A 258 AECTVNGTSFSCGNMANKICLVERVGNQGSSYPEINSTKACKTAGAKGIIVYSNSALPGLQNPFLV-----DANSDITVP 332 (441)
T ss_dssp EEEEEETTEEECCCCTTEEEEEECCSCSSSSCTHHHHHHHHHHTTCSEEEEECCTTSCSCCCCEEE-----CTTCCCCSC
T ss_pred hccccccccccCCCccccEEEEeccccCcccccHHHHHHHHHhcCCeEEEEEeCCCcccccccccc-----ccccCcccc
Confidence 4586532 478999999999987 89999999999999999999986431 111 112346899
Q ss_pred EEEechhhhHHHHHHHhccceEEEEe
Q 009071 159 AVMMPQDAGASLEKMLLNTSSVSVQL 184 (544)
Q Consensus 159 vv~Is~~~G~~L~~~L~~G~~V~V~l 184 (544)
+++|++++|++|++.+ +.+++++.
T Consensus 333 ~~~v~~~~g~~l~~~~--~~~~t~~~ 356 (441)
T 1y9z_A 333 SVSVDRATGLALKAKL--GQSTTVSN 356 (441)
T ss_dssp EEEECHHHHHHHHTTT--TSEEEEEE
T ss_pred EEEEeHHHHHHHHHHh--cCCccccc
Confidence 9999999999999877 44555543
No 10
>2kr6_A Presenilin-1; protease, alternative splicing, alzheimer disease, amyloidos apoptosis, cell adhesion, disease mutation; NMR {Homo sapiens}
Probab=96.28 E-value=0.0047 Score=57.49 Aligned_cols=65 Identities=23% Similarity=0.414 Sum_probs=52.3
Q ss_pred eeecCCCchhhHHHHHHHH--h-hcccccccccchhHHHHHHHHHHHHHHHHHHHHhhcCCCcceecccchhhhHHHHH
Q 009071 433 SIIGFGDILLPGLIIAFSL--R-YDWLANKSLQAGYFLWAMLAYGLGLLITYVALNLMDGHGQPALLYIVPFTLGTFLA 508 (544)
Q Consensus 433 s~LGlGDIviPGl~ia~~~--r-fD~~~~~~~~~~YF~~~~igY~~GL~~t~~~~~~~~~~~QPALlYlvP~~l~~~~~ 508 (544)
--|||||-|+=+++++-+. + +|.. -...|++|..+||.+|.+.+.++ +++-|||.. |..++.++.
T Consensus 88 ikLGLGDFIFYSvLVgkAa~~~~~d~~--------t~~ac~vaIL~GL~~TL~lLa~~-~~aLPALPi--SI~lG~~fy 155 (176)
T 2kr6_A 88 VKLGLGDFIFYSVLVGKASATASGDWN--------TTIACFVAILIGLCLTLLLLAIF-KKALPALPI--SITFGLVFY 155 (176)
T ss_dssp CSSCTTTHHHHHHHHHHHHHHSCCTTT--------THHHHHHHHHHHHHHHHHHHHHH-TCSCSSSSS--CCCCHHHHH
T ss_pred ccccccCeeehHHHHHHHHHhhccCHH--------HHHHHHHHHHHHHHHHHHHHhhh-cccCCCCcH--HHHHHHHHH
Confidence 5599999999999999987 5 3652 35689999999999999999998 899999975 444444433
No 11
>3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo}
Probab=90.29 E-value=0.37 Score=53.46 Aligned_cols=73 Identities=12% Similarity=0.297 Sum_probs=56.2
Q ss_pred CCCCCCC---CCCcceEEEEecCCCCHHHHHHHHHHcCCcEEEEEeCCCcccccccCCCCCCCCccceEEEechhhhHHH
Q 009071 94 DCCSMPK---HKYAGDVIMVDRGNCKFTTKANIAEAAGASALLIINNQKELYKMVCDPDETDLDIHIPAVMMPQDAGASL 170 (544)
Q Consensus 94 dgC~~~~---~~l~g~IaLV~RG~CsF~~Ka~nAq~aGA~avIV~N~~~~l~~M~~~~~~~~~~i~IPvv~Is~~~G~~L 170 (544)
..|.+.+ ...+|||++++| .+..|..+++.+||.+++++|+..+. .....+|.++++.++|..+
T Consensus 268 ~~~~~~~~~~~~v~gkivl~~~---~~~~~~~~~~~~Ga~gvi~~~~~~~~----------~~~~~lP~~~v~~~~g~~i 334 (621)
T 3vta_A 268 RFCTDKSVNPNLLKGKIVVCEA---SFGPHEFFKSLDGAAGVLMTSNTRDY----------ADSYPLPSSVLDPNDLLAT 334 (621)
T ss_dssp TTTCTTCSCGGGTTTSEEECSS---CCCHHHHHHHHTTCSEEEEECSCCSS----------CCCCSSSEEEECHHHHHHH
T ss_pred ccccccccccccccceEEEEec---CCChhHHhhhhcceeEEEEEecCCCc----------ccccccceEEECHHHHHHH
Confidence 3465543 368899999865 46689999999999999999986432 1245689999999999999
Q ss_pred HHHHhccce
Q 009071 171 EKMLLNTSS 179 (544)
Q Consensus 171 ~~~L~~G~~ 179 (544)
++.+.....
T Consensus 335 ~~~~~~~~~ 343 (621)
T 3vta_A 335 LRYIYSIRS 343 (621)
T ss_dssp HHHHHHHSS
T ss_pred HHHHhccCC
Confidence 988765443
Done!