Query 009072
Match_columns 544
No_of_seqs 506 out of 2138
Neff 8.2
Searched_HMMs 46136
Date Thu Mar 28 20:04:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009072.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009072hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03215 Rad17: Rad17 cell cyc 100.0 3.3E-60 7.2E-65 505.3 33.2 396 133-544 3-466 (519)
2 KOG1970 Checkpoint RAD17-RFC c 100.0 8.6E-57 1.9E-61 459.5 24.9 400 128-542 61-498 (634)
3 TIGR00602 rad24 checkpoint pro 100.0 2E-49 4.3E-54 429.4 25.9 394 134-544 69-523 (637)
4 KOG1969 DNA replication checkp 100.0 2.9E-41 6.2E-46 354.6 24.1 327 135-535 257-632 (877)
5 PRK04195 replication factor C 100.0 6.1E-39 1.3E-43 345.2 27.1 306 137-536 2-307 (482)
6 KOG0989 Replication factor C, 100.0 1.4E-29 3.1E-34 244.1 18.1 211 135-389 22-241 (346)
7 KOG0991 Replication factor C, 100.0 3.1E-28 6.8E-33 225.5 14.6 206 134-388 12-224 (333)
8 PRK14956 DNA polymerase III su 99.9 2.1E-26 4.6E-31 240.9 21.5 217 135-383 4-227 (484)
9 PLN03025 replication factor C 99.9 2.3E-26 5E-31 235.4 20.6 199 138-385 2-207 (319)
10 PRK14960 DNA polymerase III su 99.9 5.6E-26 1.2E-30 243.4 22.7 249 137-436 3-260 (702)
11 PRK07003 DNA polymerase III su 99.9 4.1E-26 9E-31 246.5 20.7 212 137-382 4-224 (830)
12 PRK14958 DNA polymerase III su 99.9 3.6E-25 7.8E-30 237.7 20.3 214 137-384 4-226 (509)
13 COG2256 MGS1 ATPase related to 99.9 8.1E-25 1.8E-29 218.7 19.0 201 137-388 12-222 (436)
14 PRK14964 DNA polymerase III su 99.9 1.8E-24 3.9E-29 229.0 21.6 199 138-385 2-224 (491)
15 PRK12323 DNA polymerase III su 99.9 1.4E-24 3.1E-29 232.1 20.3 214 137-382 4-229 (700)
16 PRK14949 DNA polymerase III su 99.9 2.6E-24 5.6E-29 236.8 22.3 213 137-383 4-225 (944)
17 PRK14962 DNA polymerase III su 99.9 8.4E-24 1.8E-28 224.9 22.1 198 138-384 3-224 (472)
18 PRK14952 DNA polymerase III su 99.9 1.1E-23 2.5E-28 227.9 23.5 214 138-385 2-226 (584)
19 PRK14951 DNA polymerase III su 99.9 6.6E-24 1.4E-28 230.4 21.0 215 137-383 4-230 (618)
20 PRK06645 DNA polymerase III su 99.9 1.4E-23 3.1E-28 223.9 22.7 219 134-384 6-235 (507)
21 PRK08691 DNA polymerase III su 99.9 4.7E-24 1E-28 230.7 19.1 214 137-384 4-226 (709)
22 PRK14957 DNA polymerase III su 99.9 1.3E-23 2.9E-28 225.3 21.7 214 137-384 4-226 (546)
23 PRK14961 DNA polymerase III su 99.9 1.4E-23 3.1E-28 218.2 21.1 217 137-385 4-227 (363)
24 PRK07994 DNA polymerase III su 99.9 1.6E-23 3.5E-28 227.8 21.0 213 137-383 4-225 (647)
25 PRK05896 DNA polymerase III su 99.9 2.4E-23 5.3E-28 223.3 21.0 214 136-385 3-227 (605)
26 PRK14963 DNA polymerase III su 99.9 4.2E-23 9.2E-28 221.2 22.2 212 138-385 4-224 (504)
27 PRK08451 DNA polymerase III su 99.9 3.8E-23 8.3E-28 220.7 21.7 199 137-384 2-224 (535)
28 PRK00440 rfc replication facto 99.9 9.3E-23 2E-27 208.9 23.3 202 135-385 3-210 (319)
29 PRK14959 DNA polymerase III su 99.9 4.1E-23 8.9E-28 222.7 21.5 215 136-383 3-225 (624)
30 PRK14969 DNA polymerase III su 99.9 2.7E-23 5.9E-28 224.6 19.5 215 137-385 4-227 (527)
31 PRK12402 replication factor C 99.9 9E-23 1.9E-27 210.7 22.4 217 136-385 2-233 (337)
32 PRK07764 DNA polymerase III su 99.9 7.9E-23 1.7E-27 229.2 22.5 215 137-385 3-228 (824)
33 PRK05563 DNA polymerase III su 99.9 1E-22 2.3E-27 221.5 21.7 214 137-384 4-226 (559)
34 PRK07133 DNA polymerase III su 99.9 1.4E-22 3.1E-27 221.4 22.0 215 136-384 5-225 (725)
35 PRK14965 DNA polymerase III su 99.9 9.5E-23 2E-27 222.8 20.4 215 137-384 4-226 (576)
36 PRK14953 DNA polymerase III su 99.9 2.1E-22 4.6E-27 215.2 21.7 214 137-385 4-227 (486)
37 PRK09111 DNA polymerase III su 99.9 2.3E-22 4.9E-27 218.9 21.8 218 136-385 11-240 (598)
38 KOG1968 Replication factor C, 99.9 7.4E-23 1.6E-27 227.9 16.0 296 136-494 307-610 (871)
39 TIGR02397 dnaX_nterm DNA polym 99.9 8E-22 1.7E-26 205.2 22.2 215 137-385 2-225 (355)
40 PHA02544 44 clamp loader, smal 99.9 1.3E-21 2.8E-26 200.4 22.6 204 133-384 5-215 (316)
41 PRK14971 DNA polymerase III su 99.9 6.9E-22 1.5E-26 216.6 21.0 214 137-384 5-228 (614)
42 PRK06305 DNA polymerase III su 99.9 7.4E-22 1.6E-26 209.8 20.3 216 136-384 4-228 (451)
43 PRK14955 DNA polymerase III su 99.9 7.9E-22 1.7E-26 207.4 20.2 215 138-384 5-234 (397)
44 PRK14948 DNA polymerase III su 99.9 1.8E-21 4E-26 213.3 22.5 218 136-385 3-229 (620)
45 KOG0730 AAA+-type ATPase [Post 99.9 1.7E-22 3.7E-27 212.6 13.2 265 59-385 372-654 (693)
46 PRK06647 DNA polymerase III su 99.9 2.6E-21 5.7E-26 209.8 22.6 214 137-384 4-226 (563)
47 PRK14954 DNA polymerase III su 99.9 2.2E-21 4.7E-26 211.6 21.9 215 138-384 5-234 (620)
48 PRK14970 DNA polymerase III su 99.9 2.3E-21 5E-26 202.5 20.8 211 137-384 5-215 (367)
49 PRK14950 DNA polymerase III su 99.9 2.9E-21 6.2E-26 212.2 21.8 215 137-384 4-227 (585)
50 PF05496 RuvB_N: Holliday junc 99.9 1E-21 2.3E-26 184.9 15.4 207 134-383 9-226 (233)
51 KOG2028 ATPase related to the 99.9 2.8E-21 6E-26 189.8 18.0 199 136-382 125-340 (554)
52 PRK13342 recombination factor 99.9 3.7E-21 8.1E-26 203.6 20.4 197 138-385 1-203 (413)
53 COG2812 DnaX DNA polymerase II 99.9 3.7E-21 8E-26 203.0 15.4 216 138-387 5-229 (515)
54 KOG2035 Replication factor C, 99.9 3.3E-20 7.2E-25 176.6 19.0 219 137-388 1-238 (351)
55 PRK13341 recombination factor 99.8 3.7E-20 8E-25 205.5 19.6 200 135-384 14-223 (725)
56 KOG0733 Nuclear AAA ATPase (VC 99.8 6E-20 1.3E-24 190.8 14.3 210 143-384 505-734 (802)
57 PRK00080 ruvB Holliday junctio 99.8 4.2E-19 9.2E-24 182.5 20.5 203 134-382 10-226 (328)
58 COG1222 RPT1 ATP-dependent 26S 99.8 4.1E-19 9E-24 175.3 15.7 238 137-437 139-398 (406)
59 KOG0990 Replication factor C, 99.8 4.1E-20 9E-25 179.7 8.6 211 131-386 23-240 (360)
60 KOG0736 Peroxisome assembly fa 99.8 4.9E-19 1.1E-23 188.4 12.1 281 55-383 580-895 (953)
61 KOG0733 Nuclear AAA ATPase (VC 99.8 6.7E-18 1.4E-22 175.8 17.7 198 146-379 187-403 (802)
62 PRK04132 replication factor C 99.8 7.4E-18 1.6E-22 188.0 18.0 227 179-487 565-800 (846)
63 TIGR00635 ruvB Holliday juncti 99.8 5E-17 1.1E-21 165.6 19.5 188 146-383 1-206 (305)
64 COG1223 Predicted ATPase (AAA+ 99.7 1.7E-17 3.7E-22 156.8 14.4 194 140-370 112-317 (368)
65 COG2255 RuvB Holliday junction 99.7 1.3E-16 2.8E-21 153.2 17.8 193 140-382 17-227 (332)
66 PTZ00112 origin recognition co 99.7 2.1E-16 4.7E-21 172.0 21.0 223 137-384 746-987 (1164)
67 PRK09112 DNA polymerase III su 99.7 4.3E-16 9.3E-21 160.3 21.4 206 142-382 16-244 (351)
68 PRK07940 DNA polymerase III su 99.7 2.4E-16 5.2E-21 164.3 18.9 202 147-379 3-214 (394)
69 TIGR02881 spore_V_K stage V sp 99.7 5.3E-16 1.1E-20 154.4 19.3 207 147-385 4-237 (261)
70 PRK06893 DNA replication initi 99.7 7.4E-16 1.6E-20 150.2 19.9 194 144-383 11-208 (229)
71 KOG0741 AAA+-type ATPase [Post 99.7 1.8E-16 4E-21 162.6 15.9 279 53-385 420-722 (744)
72 TIGR01243 CDC48 AAA family ATP 99.7 5.8E-17 1.3E-21 183.4 13.1 275 57-383 365-672 (733)
73 CHL00195 ycf46 Ycf46; Provisio 99.7 8.9E-16 1.9E-20 163.8 19.1 205 145-383 224-444 (489)
74 PRK08084 DNA replication initi 99.7 2.1E-15 4.6E-20 147.5 19.6 189 147-383 20-214 (235)
75 COG0470 HolB ATPase involved i 99.7 2.5E-16 5.4E-21 161.6 13.4 182 149-385 1-206 (325)
76 PTZ00361 26 proteosome regulat 99.7 6.3E-16 1.4E-20 162.6 16.6 213 136-384 170-405 (438)
77 COG0464 SpoVK ATPases of the A 99.7 8.3E-16 1.8E-20 166.9 16.8 259 59-370 171-445 (494)
78 TIGR02928 orc1/cdc6 family rep 99.7 2.2E-15 4.9E-20 157.4 19.5 220 137-384 6-252 (365)
79 TIGR02902 spore_lonB ATP-depen 99.7 1.5E-15 3.1E-20 165.1 18.2 216 136-384 52-310 (531)
80 KOG0738 AAA+-type ATPase [Post 99.7 8.5E-16 1.8E-20 152.9 14.8 208 144-385 207-434 (491)
81 PTZ00454 26S protease regulato 99.7 2.8E-15 6.1E-20 156.7 18.8 210 140-385 136-368 (398)
82 PRK07471 DNA polymerase III su 99.7 3E-15 6.5E-20 154.8 18.5 201 143-380 13-240 (365)
83 PRK08727 hypothetical protein; 99.7 1.4E-14 3.1E-19 141.5 21.6 189 146-383 16-209 (233)
84 PRK06620 hypothetical protein; 99.7 1E-14 2.3E-19 140.3 19.8 178 147-383 14-194 (214)
85 TIGR01241 FtsH_fam ATP-depende 99.6 1.6E-15 3.5E-20 164.3 15.9 213 134-383 40-275 (495)
86 PRK00411 cdc6 cell division co 99.6 1.2E-14 2.5E-19 153.6 21.3 218 138-383 22-259 (394)
87 TIGR03689 pup_AAA proteasome A 99.6 5.2E-15 1.1E-19 157.7 17.9 193 134-357 167-385 (512)
88 PRK07399 DNA polymerase III su 99.6 1.1E-14 2.4E-19 147.8 18.8 198 147-382 2-225 (314)
89 CHL00176 ftsH cell division pr 99.6 1E-14 2.2E-19 160.5 19.7 205 145-384 179-404 (638)
90 PRK03992 proteasome-activating 99.6 8.8E-15 1.9E-19 153.5 18.0 210 140-385 122-354 (389)
91 CHL00181 cbbX CbbX; Provisiona 99.6 3.8E-14 8.2E-19 142.4 20.9 203 150-385 24-253 (287)
92 KOG0734 AAA+-type ATPase conta 99.6 8.9E-15 1.9E-19 150.5 15.6 207 140-384 295-522 (752)
93 TIGR02880 cbbX_cfxQ probable R 99.6 1.4E-14 3.1E-19 145.5 16.5 204 150-386 23-253 (284)
94 PLN00020 ribulose bisphosphate 99.6 2.8E-14 6.2E-19 143.5 17.5 166 174-371 144-331 (413)
95 PRK05564 DNA polymerase III su 99.6 2.8E-14 6E-19 145.9 18.0 190 147-379 2-191 (313)
96 TIGR03420 DnaA_homol_Hda DnaA 99.6 9.9E-14 2.1E-18 135.0 20.3 189 145-383 11-206 (226)
97 KOG0735 AAA+-type ATPase [Post 99.6 9.7E-15 2.1E-19 154.6 13.9 271 62-385 598-887 (952)
98 PRK08903 DnaA regulatory inact 99.6 1.8E-13 3.9E-18 133.4 21.3 186 144-383 13-204 (227)
99 TIGR02639 ClpA ATP-dependent C 99.6 2E-14 4.4E-19 162.4 16.6 211 135-384 168-403 (731)
100 TIGR00678 holB DNA polymerase 99.6 7.4E-14 1.6E-18 132.0 17.4 170 174-375 11-188 (188)
101 KOG0737 AAA+-type ATPase [Post 99.6 2.8E-14 6.1E-19 142.1 14.9 200 146-379 89-303 (386)
102 KOG0727 26S proteasome regulat 99.6 3.7E-14 8E-19 133.7 14.4 206 145-385 151-378 (408)
103 TIGR01242 26Sp45 26S proteasom 99.6 4.4E-14 9.4E-19 147.4 16.5 210 140-384 113-344 (364)
104 PRK05642 DNA replication initi 99.6 2.5E-13 5.4E-18 132.8 20.2 193 147-383 17-213 (234)
105 COG1474 CDC6 Cdc6-related prot 99.6 2.1E-13 4.6E-18 140.9 20.3 218 138-386 9-245 (366)
106 KOG0731 AAA+-type ATPase conta 99.6 8.3E-14 1.8E-18 151.7 17.0 208 144-385 306-535 (774)
107 TIGR03345 VI_ClpV1 type VI sec 99.5 4.8E-14 1E-18 160.6 15.6 211 136-384 174-408 (852)
108 PRK00149 dnaA chromosomal repl 99.5 2E-13 4.4E-18 146.3 19.3 171 179-383 149-330 (450)
109 KOG0728 26S proteasome regulat 99.5 3.2E-14 6.9E-19 134.0 11.2 215 136-387 134-372 (404)
110 TIGR02903 spore_lon_C ATP-depe 99.5 4.7E-13 1E-17 147.7 21.3 221 136-383 141-399 (615)
111 PRK09087 hypothetical protein; 99.5 3.8E-13 8.2E-18 130.6 18.1 181 147-382 19-199 (226)
112 KOG0729 26S proteasome regulat 99.5 1.8E-14 4E-19 136.7 8.0 218 136-387 164-402 (435)
113 PF00308 Bac_DnaA: Bacterial d 99.5 1.3E-12 2.8E-17 126.4 20.6 172 179-382 35-212 (219)
114 KOG0652 26S proteasome regulat 99.5 1.3E-13 2.9E-18 130.6 13.1 198 139-369 161-374 (424)
115 TIGR00362 DnaA chromosomal rep 99.5 4E-13 8.6E-18 142.3 17.2 172 179-384 137-319 (405)
116 KOG0726 26S proteasome regulat 99.5 1.8E-14 4E-19 138.3 6.2 214 136-386 172-409 (440)
117 PRK14087 dnaA chromosomal repl 99.5 1.1E-12 2.5E-17 139.7 18.2 206 145-383 111-324 (450)
118 KOG0739 AAA+-type ATPase [Post 99.5 4.6E-13 1E-17 129.2 13.5 193 145-370 129-333 (439)
119 TIGR01243 CDC48 AAA family ATP 99.5 8.6E-13 1.9E-17 149.6 18.0 194 143-373 172-382 (733)
120 PRK05707 DNA polymerase III su 99.5 2.9E-12 6.3E-17 130.9 19.6 176 174-379 19-204 (328)
121 PRK14088 dnaA chromosomal repl 99.5 1.6E-12 3.5E-17 138.4 17.4 199 147-382 103-309 (440)
122 PRK08058 DNA polymerase III su 99.5 3.6E-12 7.8E-17 130.9 19.1 195 147-380 3-206 (329)
123 PRK12422 chromosomal replicati 99.4 1.8E-12 3.9E-17 137.7 16.8 171 179-383 142-318 (445)
124 PRK10733 hflB ATP-dependent me 99.4 2.3E-12 5.1E-17 143.3 18.0 215 136-386 139-375 (644)
125 PRK07993 DNA polymerase III su 99.4 2.4E-12 5.2E-17 131.8 16.5 184 154-380 7-206 (334)
126 CHL00095 clpC Clp protease ATP 99.4 6E-13 1.3E-17 152.2 13.3 208 139-385 169-400 (821)
127 COG0465 HflB ATP-dependent Zn 99.4 2.9E-12 6.3E-17 137.5 16.9 205 144-385 145-372 (596)
128 CHL00206 ycf2 Ycf2; Provisiona 99.4 1.4E-12 3.1E-17 151.8 15.6 191 174-387 1626-1861(2281)
129 TIGR00763 lon ATP-dependent pr 99.4 2.6E-12 5.6E-17 146.2 17.5 188 150-368 321-534 (775)
130 PRK14086 dnaA chromosomal repl 99.4 4.2E-12 9.1E-17 137.2 17.9 198 146-381 285-491 (617)
131 KOG0740 AAA+-type ATPase [Post 99.4 7.1E-12 1.5E-16 129.3 18.0 207 141-380 145-368 (428)
132 TIGR03346 chaperone_ClpB ATP-d 99.4 2.2E-12 4.7E-17 148.1 15.7 213 135-385 159-395 (852)
133 PRK10865 protein disaggregatio 99.4 2.8E-12 6.1E-17 146.7 15.9 212 136-385 165-400 (857)
134 PF00004 AAA: ATPase family as 99.4 3.1E-12 6.7E-17 113.0 12.6 100 181-302 1-109 (132)
135 PRK06871 DNA polymerase III su 99.4 1.6E-11 3.4E-16 124.7 18.5 190 153-379 6-204 (325)
136 PF05673 DUF815: Protein of un 99.4 4.9E-11 1.1E-15 114.4 20.6 206 140-382 18-245 (249)
137 KOG0743 AAA+-type ATPase [Post 99.4 1.2E-11 2.7E-16 126.7 17.2 167 143-351 195-385 (457)
138 PF06068 TIP49: TIP49 C-termin 99.4 1.7E-11 3.6E-16 123.4 17.2 115 260-382 278-395 (398)
139 PRK08769 DNA polymerase III su 99.4 1.5E-11 3.3E-16 124.7 16.8 188 153-380 8-210 (319)
140 PRK11034 clpA ATP-dependent Cl 99.3 1.6E-11 3.4E-16 137.7 16.4 207 139-384 176-407 (758)
141 COG0593 DnaA ATPase involved i 99.3 1E-10 2.2E-15 120.8 19.1 171 179-382 114-290 (408)
142 PRK10787 DNA-binding ATP-depen 99.3 4.3E-11 9.3E-16 135.2 17.5 197 151-378 324-550 (784)
143 KOG0730 AAA+-type ATPase [Post 99.3 3.9E-11 8.5E-16 127.5 15.9 193 144-372 180-386 (693)
144 TIGR03015 pepcterm_ATPase puta 99.3 2.1E-10 4.6E-15 114.6 20.0 179 179-379 44-238 (269)
145 KOG0744 AAA+-type ATPase [Post 99.3 2.1E-11 4.5E-16 119.2 12.1 173 148-349 141-340 (423)
146 KOG0651 26S proteasome regulat 99.3 1.7E-11 3.7E-16 119.3 11.1 105 147-274 130-239 (388)
147 PRK11034 clpA ATP-dependent Cl 99.3 1.3E-10 2.9E-15 130.3 19.1 205 151-377 460-709 (758)
148 PRK06090 DNA polymerase III su 99.3 1.8E-10 3.9E-15 116.7 17.7 187 153-380 7-203 (319)
149 COG1224 TIP49 DNA helicase TIP 99.3 3E-10 6.5E-15 112.6 18.6 114 260-381 291-407 (450)
150 TIGR03345 VI_ClpV1 type VI sec 99.3 1.7E-10 3.7E-15 131.7 18.7 211 150-383 567-827 (852)
151 PF13177 DNA_pol3_delta2: DNA 99.3 5.8E-11 1.3E-15 109.3 12.2 153 153-337 1-162 (162)
152 TIGR02639 ClpA ATP-dependent C 99.2 2.5E-10 5.4E-15 129.4 19.4 196 150-368 455-690 (731)
153 PRK05342 clpX ATP-dependent pr 99.2 2.6E-10 5.6E-15 119.8 17.9 211 151-379 73-374 (412)
154 KOG0742 AAA+-type ATPase [Post 99.2 1E-10 2.2E-15 117.5 13.9 171 148-352 354-531 (630)
155 PRK06964 DNA polymerase III su 99.2 5.6E-10 1.2E-14 114.2 16.5 172 174-379 18-226 (342)
156 TIGR01650 PD_CobS cobaltochela 99.2 2.6E-10 5.7E-15 114.9 13.8 201 143-374 39-257 (327)
157 COG0466 Lon ATP-dependent Lon 99.2 3.9E-10 8.5E-15 121.1 14.6 201 152-383 326-554 (782)
158 PRK05201 hslU ATP-dependent pr 99.1 6.8E-10 1.5E-14 114.7 14.3 102 260-368 249-380 (443)
159 TIGR00390 hslU ATP-dependent p 99.1 9.2E-10 2E-14 113.7 15.0 102 260-368 247-378 (441)
160 KOG2004 Mitochondrial ATP-depe 99.1 7.4E-10 1.6E-14 118.4 14.6 201 152-383 414-642 (906)
161 TIGR00382 clpX endopeptidase C 99.1 2.1E-09 4.5E-14 112.5 17.7 209 151-379 79-380 (413)
162 TIGR02640 gas_vesic_GvpN gas v 99.1 3E-09 6.4E-14 105.9 18.1 168 179-367 22-211 (262)
163 KOG0732 AAA+-type ATPase conta 99.1 1.1E-09 2.3E-14 123.2 16.2 206 145-379 261-481 (1080)
164 KOG2227 Pre-initiation complex 99.1 1.6E-09 3.4E-14 111.3 15.4 218 137-380 141-373 (529)
165 KOG1514 Origin recognition com 99.1 2.3E-09 4.9E-14 114.8 16.6 212 151-384 398-626 (767)
166 CHL00095 clpC Clp protease ATP 99.1 3.3E-09 7.3E-14 121.6 19.2 198 149-368 509-760 (821)
167 PF01637 Arch_ATPase: Archaeal 99.1 1.6E-09 3.5E-14 105.1 14.3 198 151-375 1-231 (234)
168 COG0542 clpA ATP-binding subun 99.1 2.9E-09 6.2E-14 117.5 16.6 198 150-369 492-734 (786)
169 PRK05917 DNA polymerase III su 99.1 4.6E-09 9.9E-14 104.6 16.1 153 174-373 16-176 (290)
170 TIGR03346 chaperone_ClpB ATP-d 99.0 1.3E-08 2.8E-13 117.2 21.6 213 149-383 565-822 (852)
171 COG0542 clpA ATP-binding subun 99.0 2.3E-09 4.9E-14 118.3 13.3 209 137-384 158-391 (786)
172 COG2607 Predicted ATPase (AAA+ 99.0 4.9E-08 1.1E-12 92.4 20.1 208 140-384 51-279 (287)
173 KOG1942 DNA helicase, TBP-inte 99.0 2.1E-08 4.6E-13 97.1 18.0 113 260-380 296-412 (456)
174 PRK11331 5-methylcytosine-spec 99.0 8E-09 1.7E-13 108.0 16.4 115 148-282 174-294 (459)
175 PRK10865 protein disaggregatio 99.0 2.7E-08 5.8E-13 114.3 21.8 209 149-378 568-823 (857)
176 PRK08699 DNA polymerase III su 99.0 1.1E-08 2.4E-13 104.5 15.2 146 174-347 18-183 (325)
177 PRK07132 DNA polymerase III su 98.9 1.2E-07 2.6E-12 95.6 20.5 167 174-379 15-185 (299)
178 PRK05818 DNA polymerase III su 98.9 2.3E-08 4.9E-13 97.6 14.7 170 178-382 7-194 (261)
179 PRK07276 DNA polymerase III su 98.9 9.4E-08 2E-12 95.5 17.6 184 154-379 7-198 (290)
180 KOG0735 AAA+-type ATPase [Post 98.9 5.7E-08 1.2E-12 104.1 15.8 161 177-371 430-608 (952)
181 cd00009 AAA The AAA+ (ATPases 98.8 4.6E-08 1E-12 87.0 12.2 53 153-213 2-57 (151)
182 TIGR01817 nifA Nif-specific re 98.8 2E-07 4.4E-12 102.3 18.7 217 141-385 188-427 (534)
183 KOG0736 Peroxisome assembly fa 98.8 7.5E-08 1.6E-12 104.1 14.4 188 152-374 404-600 (953)
184 PHA02244 ATPase-like protein 98.8 4.3E-07 9.4E-12 92.8 18.3 33 179-211 120-152 (383)
185 KOG2680 DNA helicase TIP49, TB 98.8 7.5E-08 1.6E-12 93.6 11.7 118 260-384 288-407 (454)
186 PF05621 TniB: Bacterial TniB 98.7 7.2E-07 1.6E-11 88.6 18.4 184 179-384 62-267 (302)
187 PRK13407 bchI magnesium chelat 98.7 3.5E-07 7.6E-12 93.6 16.5 51 144-202 3-53 (334)
188 smart00382 AAA ATPases associa 98.7 1.5E-07 3.3E-12 82.8 12.2 86 179-276 3-94 (148)
189 PRK07952 DNA replication prote 98.7 7.3E-08 1.6E-12 94.3 10.9 67 140-212 63-136 (244)
190 PF07724 AAA_2: AAA domain (Cd 98.7 2.6E-08 5.7E-13 92.4 6.1 103 179-302 4-127 (171)
191 TIGR02974 phageshock_pspF psp 98.7 7.2E-07 1.6E-11 91.7 17.0 206 151-386 1-233 (329)
192 COG0714 MoxR-like ATPases [Gen 98.7 4E-07 8.6E-12 93.9 14.8 53 151-213 26-78 (329)
193 PF13401 AAA_22: AAA domain; P 98.7 3.2E-08 7E-13 87.3 5.8 107 179-301 5-124 (131)
194 KOG0741 AAA+-type ATPase [Post 98.7 5.8E-08 1.2E-12 100.9 8.1 187 174-385 252-457 (744)
195 PRK08939 primosomal protein Dn 98.6 1E-07 2.2E-12 96.7 9.6 67 143-213 121-194 (306)
196 PRK12377 putative replication 98.6 4.2E-07 9.1E-12 89.2 12.4 52 156-213 85-139 (248)
197 COG1219 ClpX ATP-dependent pro 98.6 2E-07 4.4E-12 91.6 9.7 97 178-291 97-202 (408)
198 PRK13531 regulatory ATPase Rav 98.6 8.2E-07 1.8E-11 93.9 13.5 43 151-203 22-64 (498)
199 PRK11388 DNA-binding transcrip 98.5 9.1E-07 2E-11 99.3 14.6 207 146-385 322-553 (638)
200 PF00931 NB-ARC: NB-ARC domain 98.5 5E-07 1.1E-11 91.0 11.4 183 154-374 1-198 (287)
201 PF07728 AAA_5: AAA domain (dy 98.5 1.4E-07 3E-12 84.4 6.2 91 180-291 1-91 (139)
202 TIGR02329 propionate_PrpR prop 98.5 2.8E-06 6.1E-11 92.3 16.6 211 146-385 209-449 (526)
203 PRK08116 hypothetical protein; 98.5 1.3E-06 2.8E-11 87.2 12.7 69 142-213 78-152 (268)
204 PRK15424 propionate catabolism 98.5 4.9E-06 1.1E-10 90.4 18.1 210 146-384 216-463 (538)
205 PRK10820 DNA-binding transcrip 98.5 5.7E-06 1.2E-10 90.4 18.0 212 144-385 199-436 (520)
206 PF13173 AAA_14: AAA domain 98.5 1.5E-06 3.2E-11 76.7 10.9 36 179-214 3-40 (128)
207 COG1220 HslU ATP-dependent pro 98.5 3.1E-06 6.7E-11 84.0 13.6 63 151-213 17-85 (444)
208 PRK08181 transposase; Validate 98.4 5.6E-07 1.2E-11 89.4 8.5 34 179-212 107-143 (269)
209 PF07726 AAA_3: ATPase family 98.4 4.3E-07 9.4E-12 78.8 6.6 32 180-211 1-32 (131)
210 PRK11608 pspF phage shock prot 98.4 6E-06 1.3E-10 84.9 15.6 209 147-385 4-239 (326)
211 PRK06921 hypothetical protein; 98.4 6.7E-06 1.5E-10 81.9 14.9 51 159-211 100-154 (266)
212 PRK06526 transposase; Provisio 98.4 5.6E-07 1.2E-11 88.9 6.5 31 179-209 99-132 (254)
213 PRK15429 formate hydrogenlyase 98.4 1.7E-05 3.6E-10 89.9 19.3 210 146-385 373-608 (686)
214 TIGR02030 BchI-ChlI magnesium 98.4 2.5E-05 5.5E-10 80.2 18.4 47 148-202 3-49 (337)
215 PF13191 AAA_16: AAA ATPase do 98.4 4.2E-07 9.1E-12 85.0 4.8 59 150-213 1-62 (185)
216 smart00763 AAA_PrkA PrkA AAA d 98.3 1.1E-06 2.3E-11 89.9 7.7 67 143-211 44-118 (361)
217 CHL00081 chlI Mg-protoporyphyr 98.3 3E-05 6.5E-10 79.7 17.9 53 142-202 9-62 (350)
218 PF05729 NACHT: NACHT domain 98.3 1.4E-05 3.1E-10 73.0 14.1 79 259-350 80-164 (166)
219 COG3267 ExeA Type II secretory 98.3 8.1E-05 1.7E-09 71.8 19.4 186 179-384 52-250 (269)
220 PRK13695 putative NTPase; Prov 98.3 2.4E-05 5.1E-10 72.9 15.6 147 180-348 2-171 (174)
221 PLN03210 Resistant to P. syrin 98.3 2.2E-05 4.7E-10 94.0 18.8 52 146-203 181-232 (1153)
222 PRK05022 anaerobic nitric oxid 98.3 4.9E-05 1.1E-09 83.0 20.0 210 147-386 185-420 (509)
223 COG1618 Predicted nucleotide k 98.3 2E-05 4.4E-10 70.6 13.7 35 179-213 6-43 (179)
224 PF12775 AAA_7: P-loop contain 98.3 3.5E-06 7.5E-11 84.2 9.8 171 147-351 8-195 (272)
225 KOG0745 Putative ATP-dependent 98.3 2.9E-06 6.3E-11 86.7 9.2 96 179-291 227-331 (564)
226 TIGR02442 Cob-chelat-sub cobal 98.3 3.4E-05 7.4E-10 86.2 18.6 47 148-202 3-49 (633)
227 PF01695 IstB_IS21: IstB-like 98.3 8.3E-07 1.8E-11 83.0 4.8 35 179-213 48-85 (178)
228 PRK09183 transposase/IS protei 98.3 2.6E-06 5.7E-11 84.5 8.7 34 179-212 103-139 (259)
229 PRK06835 DNA replication prote 98.3 1.3E-05 2.8E-10 82.1 13.9 51 157-213 168-221 (329)
230 PRK14700 recombination factor 98.3 2.7E-06 5.9E-11 84.2 8.5 69 314-384 19-93 (300)
231 PRK04841 transcriptional regul 98.2 3.2E-05 6.8E-10 90.6 17.9 193 144-375 9-222 (903)
232 PF03266 NTPase_1: NTPase; In 98.2 1.1E-06 2.4E-11 81.2 4.4 71 260-343 95-165 (168)
233 PHA02774 E1; Provisional 98.2 2.3E-05 4.9E-10 84.2 13.6 36 174-209 430-465 (613)
234 COG1484 DnaC DNA replication p 98.2 1.5E-05 3.2E-10 78.9 11.4 35 179-213 106-143 (254)
235 PF00910 RNA_helicase: RNA hel 98.2 9E-06 2E-10 69.4 8.5 23 181-203 1-23 (107)
236 KOG1051 Chaperone HSP104 and r 98.1 2.1E-05 4.6E-10 88.6 13.1 121 151-293 564-688 (898)
237 PF00158 Sigma54_activat: Sigm 98.1 2E-05 4.4E-10 72.9 10.3 58 151-214 1-61 (168)
238 COG2204 AtoC Response regulato 98.1 0.00026 5.7E-09 74.9 19.6 211 147-387 139-375 (464)
239 PHA02624 large T antigen; Prov 98.1 2.7E-05 5.9E-10 84.0 11.4 41 174-214 427-467 (647)
240 TIGR02915 PEP_resp_reg putativ 98.1 9.3E-05 2E-09 79.5 15.8 211 147-385 137-371 (445)
241 cd01120 RecA-like_NTPases RecA 98.1 3.7E-05 7.9E-10 69.9 10.8 34 180-213 1-37 (165)
242 PHA00729 NTP-binding motif con 98.0 5.7E-05 1.2E-09 72.6 11.8 30 179-208 18-47 (226)
243 KOG2170 ATPase of the AAA+ sup 98.0 0.00033 7.3E-09 69.0 17.0 193 151-367 84-318 (344)
244 PRK15115 response regulator Gl 98.0 0.00038 8.2E-09 74.8 19.2 206 150-385 135-366 (444)
245 PF12780 AAA_8: P-loop contain 98.0 0.0002 4.3E-09 71.3 15.5 180 149-366 8-226 (268)
246 PTZ00202 tuzin; Provisional 98.0 0.00037 8E-09 72.6 17.7 64 144-212 257-320 (550)
247 PF14516 AAA_35: AAA-like doma 98.0 0.00054 1.2E-08 70.6 19.1 179 179-379 32-243 (331)
248 PRK04132 replication factor C 98.0 4E-06 8.8E-11 94.8 3.5 51 136-194 6-56 (846)
249 PF13207 AAA_17: AAA domain; P 98.0 8.3E-06 1.8E-10 70.8 4.6 31 180-210 1-31 (121)
250 TIGR01128 holA DNA polymerase 98.0 0.00027 5.9E-09 71.7 16.3 149 260-436 46-195 (302)
251 PRK10923 glnG nitrogen regulat 97.9 0.00053 1.1E-08 74.2 19.2 209 147-385 136-370 (469)
252 PRK06585 holA DNA polymerase I 97.9 0.00086 1.9E-08 69.5 19.9 200 179-436 21-227 (343)
253 COG1221 PspF Transcriptional r 97.9 0.00032 6.8E-09 73.0 16.3 203 146-387 75-310 (403)
254 TIGR02031 BchD-ChlD magnesium 97.9 0.00036 7.8E-09 77.3 17.9 32 179-210 17-50 (589)
255 PRK06581 DNA polymerase III su 97.9 0.00077 1.7E-08 64.9 17.6 176 174-380 12-189 (263)
256 PF14532 Sigma54_activ_2: Sigm 97.9 7.7E-05 1.7E-09 66.6 10.1 46 153-204 2-47 (138)
257 PRK12723 flagellar biosynthesi 97.9 0.00052 1.1E-08 71.8 17.7 171 157-354 150-340 (388)
258 PRK11361 acetoacetate metaboli 97.9 0.00096 2.1E-08 71.9 20.3 207 149-385 143-375 (457)
259 PF12774 AAA_6: Hydrolytic ATP 97.9 0.00031 6.8E-09 68.3 14.8 67 179-275 33-99 (231)
260 TIGR00174 miaA tRNA isopenteny 97.9 0.00015 3.1E-09 72.7 12.6 158 181-388 2-170 (287)
261 PF10443 RNA12: RNA12 protein; 97.9 0.00037 8.1E-09 72.5 15.7 110 261-384 149-280 (431)
262 TIGR01818 ntrC nitrogen regula 97.9 0.00072 1.6E-08 73.1 19.0 207 149-385 134-366 (463)
263 PRK05574 holA DNA polymerase I 97.9 0.00083 1.8E-08 69.4 18.4 118 260-385 76-195 (340)
264 KOG2543 Origin recognition com 97.9 0.0002 4.4E-09 72.6 13.0 178 149-347 6-191 (438)
265 PLN02840 tRNA dimethylallyltra 97.8 0.00027 5.8E-09 74.1 13.9 163 179-388 22-196 (421)
266 PRK11889 flhF flagellar biosyn 97.8 0.0011 2.5E-08 68.6 18.0 152 179-353 242-404 (436)
267 PRK07452 DNA polymerase III su 97.8 0.0011 2.4E-08 68.2 17.9 169 179-385 2-179 (326)
268 TIGR00368 Mg chelatase-related 97.8 9.6E-05 2.1E-09 79.9 10.3 47 146-202 189-235 (499)
269 PRK14974 cell division protein 97.8 0.00079 1.7E-08 69.1 16.5 33 179-211 141-176 (336)
270 smart00350 MCM minichromosome 97.8 0.00068 1.5E-08 74.0 16.9 148 180-351 238-402 (509)
271 PF01078 Mg_chelatase: Magnesi 97.8 2.1E-05 4.6E-10 74.3 4.3 46 147-202 1-46 (206)
272 PF06309 Torsin: Torsin; Inte 97.8 5.4E-05 1.2E-09 65.6 6.5 52 150-202 26-77 (127)
273 cd03281 ABC_MSH5_euk MutS5 hom 97.8 0.00014 3.1E-09 70.0 10.0 22 179-200 30-51 (213)
274 PRK08485 DNA polymerase III su 97.8 0.00039 8.5E-09 65.1 12.2 116 235-379 40-168 (206)
275 PRK14729 miaA tRNA delta(2)-is 97.8 0.00047 1E-08 69.4 13.8 159 179-388 5-174 (300)
276 PRK10536 hypothetical protein; 97.8 0.00051 1.1E-08 67.2 13.5 35 179-213 75-113 (262)
277 PRK00091 miaA tRNA delta(2)-is 97.7 0.00019 4E-09 72.8 10.7 159 179-387 5-174 (307)
278 COG3829 RocR Transcriptional r 97.7 0.002 4.3E-08 68.6 18.5 199 142-384 238-477 (560)
279 COG5271 MDN1 AAA ATPase contai 97.7 0.00095 2.1E-08 78.0 16.9 187 151-377 867-1071(4600)
280 TIGR01618 phage_P_loop phage n 97.7 8.3E-05 1.8E-09 71.6 7.1 21 179-199 13-33 (220)
281 cd01129 PulE-GspE PulE/GspE Th 97.7 0.00015 3.3E-09 72.2 9.2 102 145-271 56-160 (264)
282 PRK15455 PrkA family serine pr 97.7 5.3E-05 1.2E-09 81.5 5.9 64 146-211 73-137 (644)
283 COG2909 MalT ATP-dependent tra 97.7 0.0015 3.2E-08 72.7 17.0 194 143-372 13-227 (894)
284 PF13604 AAA_30: AAA domain; P 97.7 0.00034 7.5E-09 66.5 10.9 34 179-213 19-55 (196)
285 COG1239 ChlI Mg-chelatase subu 97.7 0.002 4.3E-08 66.7 16.9 107 259-382 143-263 (423)
286 cd01121 Sms Sms (bacterial rad 97.7 0.00032 6.9E-09 73.2 11.4 114 174-300 78-207 (372)
287 PF00448 SRP54: SRP54-type pro 97.7 0.00088 1.9E-08 63.6 13.6 153 179-353 2-167 (196)
288 PRK04296 thymidine kinase; Pro 97.7 0.00042 9.2E-09 65.5 11.3 33 179-211 3-38 (190)
289 COG2804 PulE Type II secretory 97.7 0.00017 3.8E-09 76.1 9.4 61 143-212 232-295 (500)
290 KOG2228 Origin recognition com 97.7 0.0012 2.6E-08 66.1 14.5 180 150-349 25-219 (408)
291 PRK00771 signal recognition pa 97.7 0.0041 8.9E-08 66.2 19.7 37 178-214 95-134 (437)
292 PRK05703 flhF flagellar biosyn 97.7 0.0028 6E-08 67.5 18.3 36 178-213 221-261 (424)
293 cd03283 ABC_MutS-like MutS-lik 97.6 0.0011 2.3E-08 63.2 13.7 22 179-200 26-47 (199)
294 PRK08118 topology modulation p 97.6 4.7E-05 1E-09 70.4 4.1 32 179-210 2-33 (167)
295 COG0324 MiaA tRNA delta(2)-iso 97.6 0.00083 1.8E-08 67.5 13.2 161 179-389 4-175 (308)
296 PRK00131 aroK shikimate kinase 97.6 5.9E-05 1.3E-09 69.8 4.7 32 178-209 4-35 (175)
297 PRK11823 DNA repair protein Ra 97.6 0.00036 7.9E-09 74.7 11.2 113 174-299 76-204 (446)
298 KOG3347 Predicted nucleotide k 97.6 4.8E-05 1E-09 67.2 3.6 32 179-210 8-39 (176)
299 COG1102 Cmk Cytidylate kinase 97.6 5.6E-05 1.2E-09 67.8 3.9 29 180-208 2-30 (179)
300 PF03969 AFG1_ATPase: AFG1-lik 97.6 0.00046 1E-08 71.7 10.8 28 177-204 61-88 (362)
301 COG4088 Predicted nucleotide k 97.6 0.00065 1.4E-08 63.4 10.4 25 179-203 2-26 (261)
302 TIGR02237 recomb_radB DNA repa 97.6 0.00062 1.3E-08 65.2 10.9 39 174-212 8-49 (209)
303 COG5271 MDN1 AAA ATPase contai 97.6 0.00098 2.1E-08 77.9 13.7 177 179-383 1544-1753(4600)
304 PRK10365 transcriptional regul 97.6 0.0015 3.2E-08 70.0 15.0 204 150-385 140-371 (441)
305 PF13671 AAA_33: AAA domain; P 97.6 7.3E-05 1.6E-09 66.8 4.1 29 180-208 1-29 (143)
306 cd01124 KaiC KaiC is a circadi 97.5 0.00086 1.9E-08 62.8 11.4 33 180-212 1-36 (187)
307 PF09848 DUF2075: Uncharacteri 97.5 0.0002 4.3E-09 74.6 7.6 164 179-352 2-182 (352)
308 COG4619 ABC-type uncharacteriz 97.5 0.00083 1.8E-08 60.9 10.3 43 260-302 151-193 (223)
309 cd01131 PilT Pilus retraction 97.5 0.00022 4.7E-09 67.9 7.1 34 179-212 2-39 (198)
310 PRK10436 hypothetical protein; 97.5 0.00046 1E-08 73.9 10.2 60 145-213 194-256 (462)
311 PF10923 DUF2791: P-loop Domai 97.5 0.026 5.6E-07 59.4 22.8 128 260-387 239-402 (416)
312 PRK14722 flhF flagellar biosyn 97.5 0.00093 2E-08 69.4 12.0 25 178-202 137-161 (374)
313 PRK07914 hypothetical protein; 97.5 0.0056 1.2E-07 62.8 17.8 147 260-436 64-211 (320)
314 PRK12726 flagellar biosynthesi 97.5 0.0063 1.4E-07 63.0 17.7 36 178-213 206-244 (407)
315 cd01128 rho_factor Transcripti 97.5 0.00031 6.7E-09 69.2 7.9 26 179-204 17-42 (249)
316 PRK05629 hypothetical protein; 97.5 0.0066 1.4E-07 62.2 18.1 145 260-436 64-209 (318)
317 COG1419 FlhF Flagellar GTP-bin 97.5 0.0033 7.1E-08 65.1 15.5 173 150-353 179-365 (407)
318 TIGR02533 type_II_gspE general 97.5 0.00041 8.8E-09 75.0 9.4 61 144-213 217-280 (486)
319 PRK05800 cobU adenosylcobinami 97.5 0.00092 2E-08 62.0 10.3 35 179-213 2-36 (170)
320 COG1936 Predicted nucleotide k 97.5 9E-05 1.9E-09 67.4 3.3 30 180-210 2-31 (180)
321 PRK03839 putative kinase; Prov 97.5 0.00011 2.5E-09 68.6 4.2 30 180-209 2-31 (180)
322 cd01394 radB RadB. The archaea 97.5 0.0014 3E-08 63.3 11.9 39 174-212 15-56 (218)
323 PRK13765 ATP-dependent proteas 97.5 0.00014 3.1E-09 80.5 5.6 53 142-204 24-76 (637)
324 PRK09361 radB DNA repair and r 97.4 0.001 2.2E-08 64.5 10.9 39 174-212 19-60 (225)
325 PF00437 T2SE: Type II/IV secr 97.4 0.00025 5.3E-09 71.0 6.6 107 145-272 100-209 (270)
326 TIGR02688 conserved hypothetic 97.4 0.0015 3.4E-08 68.1 12.5 23 179-201 210-232 (449)
327 PF00519 PPV_E1_C: Papillomavi 97.4 0.0005 1.1E-08 70.3 8.6 44 174-217 258-301 (432)
328 PF10236 DAP3: Mitochondrial r 97.4 0.018 4E-07 58.7 20.0 49 328-376 256-307 (309)
329 TIGR02782 TrbB_P P-type conjug 97.4 0.00035 7.5E-09 70.9 7.4 62 145-212 105-171 (299)
330 TIGR02012 tigrfam_recA protein 97.4 0.0013 2.8E-08 66.9 11.4 39 174-212 51-92 (321)
331 PRK13947 shikimate kinase; Pro 97.4 0.00015 3.2E-09 67.2 4.3 32 179-210 2-33 (171)
332 TIGR01420 pilT_fam pilus retra 97.4 0.00061 1.3E-08 70.6 9.2 34 179-212 123-160 (343)
333 cd03115 SRP The signal recogni 97.4 0.0027 5.8E-08 58.9 12.6 34 180-213 2-38 (173)
334 PRK12727 flagellar biosynthesi 97.4 0.01 2.2E-07 64.0 18.4 25 178-202 350-374 (559)
335 PRK00625 shikimate kinase; Pro 97.4 0.00016 3.4E-09 67.2 4.2 31 180-210 2-32 (173)
336 cd00984 DnaB_C DnaB helicase C 97.4 0.0023 5E-08 62.7 12.7 40 174-213 9-52 (242)
337 smart00534 MUTSac ATPase domai 97.4 0.0028 6.1E-08 59.6 12.7 19 181-199 2-20 (185)
338 COG1116 TauB ABC-type nitrate/ 97.4 0.0014 3E-08 63.5 10.5 24 179-202 30-53 (248)
339 PRK08533 flagellar accessory p 97.4 0.0029 6.2E-08 61.8 12.9 39 174-212 20-61 (230)
340 PRK05973 replicative DNA helic 97.4 0.0022 4.9E-08 62.5 11.8 38 174-211 60-100 (237)
341 TIGR02538 type_IV_pilB type IV 97.3 0.00079 1.7E-08 74.4 9.7 102 145-271 292-396 (564)
342 PRK12724 flagellar biosynthesi 97.3 0.012 2.6E-07 61.8 17.8 34 178-211 223-260 (432)
343 PRK14531 adenylate kinase; Pro 97.3 0.00021 4.6E-09 67.1 4.4 30 179-208 3-32 (183)
344 TIGR00150 HI0065_YjeE ATPase, 97.3 0.00053 1.2E-08 60.6 6.5 51 156-213 6-56 (133)
345 cd03282 ABC_MSH4_euk MutS4 hom 97.3 0.0021 4.6E-08 61.4 11.2 22 179-200 30-51 (204)
346 PRK07261 topology modulation p 97.3 0.00023 5E-09 66.1 4.4 30 180-209 2-31 (171)
347 cd03243 ABC_MutS_homologs The 97.3 0.0019 4.2E-08 61.6 10.9 22 179-200 30-51 (202)
348 cd00464 SK Shikimate kinase (S 97.3 0.0002 4.3E-09 64.9 3.9 30 180-209 1-30 (154)
349 cd00983 recA RecA is a bacter 97.3 0.002 4.3E-08 65.7 11.4 39 174-212 51-92 (325)
350 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.3 0.0031 6.8E-08 56.7 11.6 24 179-202 27-50 (144)
351 PF01745 IPT: Isopentenyl tran 97.3 0.0056 1.2E-07 57.9 13.4 33 179-211 2-34 (233)
352 PRK06762 hypothetical protein; 97.3 0.00027 5.8E-09 65.1 4.7 32 179-210 3-34 (166)
353 COG1373 Predicted ATPase (AAA+ 97.3 0.0033 7.2E-08 66.4 13.5 123 180-343 39-161 (398)
354 PRK08154 anaerobic benzoate ca 97.3 0.00049 1.1E-08 70.3 7.0 56 154-209 109-164 (309)
355 PRK14532 adenylate kinase; Pro 97.3 0.00024 5.2E-09 66.9 4.5 30 180-209 2-31 (188)
356 TIGR03499 FlhF flagellar biosy 97.3 0.0024 5.3E-08 64.2 11.9 36 178-213 194-234 (282)
357 TIGR01359 UMP_CMP_kin_fam UMP- 97.3 0.00021 4.6E-09 66.9 4.0 30 180-209 1-30 (183)
358 PRK13949 shikimate kinase; Pro 97.3 0.00022 4.8E-09 66.1 4.0 31 179-209 2-32 (169)
359 cd03222 ABC_RNaseL_inhibitor T 97.3 0.0018 3.8E-08 60.5 10.1 24 179-202 26-49 (177)
360 PRK13900 type IV secretion sys 97.3 0.01 2.2E-07 61.0 16.6 45 160-210 148-194 (332)
361 PF06144 DNA_pol3_delta: DNA p 97.3 0.002 4.3E-08 59.5 10.3 114 260-383 57-171 (172)
362 cd00267 ABC_ATPase ABC (ATP-bi 97.3 0.0025 5.4E-08 58.1 10.8 25 179-203 26-50 (157)
363 PRK14530 adenylate kinase; Pro 97.3 0.00028 6.1E-09 68.0 4.6 31 179-209 4-34 (215)
364 cd00227 CPT Chloramphenicol (C 97.3 0.00023 5E-09 66.3 3.9 30 179-208 3-32 (175)
365 cd03287 ABC_MSH3_euk MutS3 hom 97.3 0.0041 8.8E-08 60.2 12.6 22 179-200 32-53 (222)
366 cd02020 CMPK Cytidine monophos 97.3 0.00024 5.3E-09 63.6 3.9 31 180-210 1-31 (147)
367 TIGR01360 aden_kin_iso1 adenyl 97.3 0.00029 6.3E-09 66.1 4.4 30 179-208 4-33 (188)
368 cd02021 GntK Gluconate kinase 97.3 0.00026 5.7E-09 63.9 4.0 29 180-208 1-29 (150)
369 PRK14737 gmk guanylate kinase; 97.3 0.011 2.5E-07 55.5 15.1 25 178-202 4-28 (186)
370 cd01393 recA_like RecA is a b 97.2 0.0039 8.4E-08 60.4 12.4 40 174-213 15-63 (226)
371 PRK10416 signal recognition pa 97.2 0.027 5.8E-07 57.6 18.9 34 178-211 114-150 (318)
372 cd03280 ABC_MutS2 MutS2 homolo 97.2 0.0018 4E-08 61.6 9.8 22 179-200 29-50 (200)
373 PRK06696 uridine kinase; Valid 97.2 0.00074 1.6E-08 65.6 7.2 52 154-210 3-57 (223)
374 PRK09376 rho transcription ter 97.2 0.0012 2.6E-08 68.4 8.9 25 179-203 170-194 (416)
375 COG2805 PilT Tfp pilus assembl 97.2 0.002 4.3E-08 63.7 9.9 35 179-213 126-164 (353)
376 TIGR00764 lon_rel lon-related 97.2 0.00043 9.4E-09 76.9 5.9 49 146-204 15-63 (608)
377 PRK06217 hypothetical protein; 97.2 0.00034 7.3E-09 65.7 4.4 31 180-210 3-33 (183)
378 cd00544 CobU Adenosylcobinamid 97.2 0.0046 1E-07 57.2 11.8 33 181-213 2-34 (169)
379 PRK06067 flagellar accessory p 97.2 0.0038 8.2E-08 61.0 11.9 40 174-213 21-63 (234)
380 PF02562 PhoH: PhoH-like prote 97.2 0.00088 1.9E-08 63.7 7.0 24 179-202 20-43 (205)
381 PLN02748 tRNA dimethylallyltra 97.2 0.0043 9.3E-08 66.3 12.9 31 179-209 23-53 (468)
382 cd03216 ABC_Carb_Monos_I This 97.2 0.0043 9.3E-08 57.1 11.5 25 178-202 26-50 (163)
383 cd03238 ABC_UvrA The excision 97.2 0.0057 1.2E-07 57.0 12.3 24 178-201 21-44 (176)
384 TIGR01313 therm_gnt_kin carboh 97.2 0.00031 6.7E-09 64.5 3.8 27 181-207 1-27 (163)
385 COG0606 Predicted ATPase with 97.2 0.00029 6.3E-09 73.8 3.9 48 145-202 175-222 (490)
386 COG1117 PstB ABC-type phosphat 97.2 0.0034 7.3E-08 59.3 10.5 26 177-202 32-57 (253)
387 TIGR00416 sms DNA repair prote 97.2 0.0027 5.9E-08 68.1 11.4 112 174-299 90-218 (454)
388 TIGR03574 selen_PSTK L-seryl-t 97.2 0.0016 3.5E-08 64.3 8.9 31 181-211 2-35 (249)
389 TIGR02525 plasmid_TraJ plasmid 97.2 0.0016 3.5E-08 67.7 9.1 35 179-213 150-189 (372)
390 cd01428 ADK Adenylate kinase ( 97.2 0.00039 8.4E-09 65.6 4.1 29 181-209 2-30 (194)
391 PRK06547 hypothetical protein; 97.2 0.00042 9E-09 64.4 4.2 31 179-209 16-46 (172)
392 cd01122 GP4d_helicase GP4d_hel 97.2 0.0049 1.1E-07 61.5 12.3 40 174-213 26-69 (271)
393 PF13245 AAA_19: Part of AAA d 97.1 0.00044 9.4E-09 55.0 3.7 24 179-202 11-35 (76)
394 PRK14528 adenylate kinase; Pro 97.1 0.00043 9.2E-09 65.3 4.3 31 179-209 2-32 (186)
395 TIGR00767 rho transcription te 97.1 0.0021 4.5E-08 66.9 9.6 25 179-203 169-193 (415)
396 cd01123 Rad51_DMC1_radA Rad51_ 97.1 0.0037 8.1E-08 60.9 11.1 40 174-213 15-63 (235)
397 TIGR00064 ftsY signal recognit 97.1 0.043 9.3E-07 54.9 18.7 34 178-211 72-108 (272)
398 PRK09354 recA recombinase A; P 97.1 0.0038 8.2E-08 64.2 11.2 40 174-213 56-98 (349)
399 cd03223 ABCD_peroxisomal_ALDP 97.1 0.0061 1.3E-07 56.2 11.7 25 178-202 27-51 (166)
400 PRK04040 adenylate kinase; Pro 97.1 0.00052 1.1E-08 64.8 4.5 30 179-208 3-34 (188)
401 TIGR03877 thermo_KaiC_1 KaiC d 97.1 0.0092 2E-07 58.4 13.5 39 174-212 17-58 (237)
402 PF07693 KAP_NTPase: KAP famil 97.1 0.014 3E-07 59.8 15.4 92 258-351 170-265 (325)
403 COG0703 AroK Shikimate kinase 97.1 0.00042 9.2E-09 63.6 3.6 31 179-209 3-33 (172)
404 PRK13946 shikimate kinase; Pro 97.1 0.00051 1.1E-08 64.6 4.3 31 179-209 11-41 (184)
405 PRK13833 conjugal transfer pro 97.1 0.0015 3.3E-08 66.6 8.0 51 146-202 118-168 (323)
406 PTZ00088 adenylate kinase 1; P 97.1 0.00048 1E-08 67.0 4.1 32 179-210 7-38 (229)
407 PRK02496 adk adenylate kinase; 97.1 0.00049 1.1E-08 64.6 4.1 30 180-209 3-32 (184)
408 PLN02200 adenylate kinase fami 97.1 0.00064 1.4E-08 66.4 5.0 29 179-207 44-72 (234)
409 COG3854 SpoIIIAA ncharacterize 97.1 0.0027 5.8E-08 60.5 8.7 23 180-202 139-161 (308)
410 PRK13764 ATPase; Provisional 97.1 0.0022 4.9E-08 70.4 9.6 55 144-211 236-293 (602)
411 PRK03731 aroL shikimate kinase 97.1 0.00059 1.3E-08 63.2 4.4 31 179-209 3-33 (171)
412 PRK13948 shikimate kinase; Pro 97.1 0.00067 1.5E-08 63.6 4.8 33 178-210 10-42 (182)
413 PRK13894 conjugal transfer ATP 97.1 0.0021 4.5E-08 65.7 8.7 52 145-202 121-172 (319)
414 cd01125 repA Hexameric Replica 97.1 0.015 3.2E-07 57.0 14.5 36 180-215 3-53 (239)
415 PTZ00111 DNA replication licen 97.0 0.0049 1.1E-07 70.1 12.1 23 180-202 494-516 (915)
416 PRK14527 adenylate kinase; Pro 97.0 0.00049 1.1E-08 65.0 3.6 30 179-208 7-36 (191)
417 COG3604 FhlA Transcriptional r 97.0 0.044 9.4E-07 58.0 18.0 203 147-386 221-456 (550)
418 cd03284 ABC_MutS1 MutS1 homolo 97.0 0.0055 1.2E-07 59.2 10.9 22 179-200 31-52 (216)
419 PRK01184 hypothetical protein; 97.0 0.00065 1.4E-08 63.7 4.4 30 179-209 2-31 (184)
420 TIGR01448 recD_rel helicase, p 97.0 0.0046 1E-07 70.2 11.9 112 179-305 339-454 (720)
421 cd02027 APSK Adenosine 5'-phos 97.0 0.002 4.4E-08 58.3 7.3 32 180-211 1-35 (149)
422 PRK05057 aroK shikimate kinase 97.0 0.00077 1.7E-08 62.7 4.6 32 179-210 5-36 (172)
423 PF01443 Viral_helicase1: Vira 97.0 0.00082 1.8E-08 65.4 5.0 22 181-202 1-22 (234)
424 PRK10867 signal recognition pa 97.0 0.044 9.5E-07 58.3 18.3 38 178-215 100-141 (433)
425 TIGR03878 thermo_KaiC_2 KaiC d 97.0 0.0088 1.9E-07 59.4 12.4 37 174-210 32-71 (259)
426 cd02019 NK Nucleoside/nucleoti 97.0 0.00081 1.8E-08 52.4 3.9 22 181-202 2-23 (69)
427 TIGR02524 dot_icm_DotB Dot/Icm 97.0 0.0022 4.9E-08 66.5 8.4 35 179-213 135-175 (358)
428 TIGR00959 ffh signal recogniti 97.0 0.13 2.7E-06 54.8 21.5 37 178-214 99-139 (428)
429 PRK06731 flhF flagellar biosyn 97.0 0.027 5.9E-07 56.1 15.5 147 179-351 76-236 (270)
430 PF13086 AAA_11: AAA domain; P 97.0 0.00065 1.4E-08 65.6 3.9 23 180-202 19-41 (236)
431 TIGR01351 adk adenylate kinase 97.0 0.00072 1.6E-08 65.0 4.1 29 181-209 2-30 (210)
432 PRK00279 adk adenylate kinase; 97.0 0.00081 1.8E-08 64.9 4.5 30 180-209 2-31 (215)
433 COG3899 Predicted ATPase [Gene 97.0 0.012 2.7E-07 67.9 14.8 108 259-384 153-266 (849)
434 cd03246 ABCC_Protease_Secretio 97.0 0.0094 2E-07 55.3 11.5 24 179-202 29-52 (173)
435 PF13238 AAA_18: AAA domain; P 97.0 0.00063 1.4E-08 59.3 3.3 22 181-202 1-22 (129)
436 PRK04182 cytidylate kinase; Pr 97.0 0.00081 1.8E-08 62.5 4.2 29 180-208 2-30 (180)
437 PF06745 KaiC: KaiC; InterPro 97.0 0.004 8.8E-08 60.4 9.3 41 174-214 15-59 (226)
438 smart00173 RAS Ras subfamily o 96.9 0.017 3.6E-07 52.5 12.9 22 180-201 2-23 (164)
439 PRK08487 DNA polymerase III su 96.9 0.084 1.8E-06 54.4 19.3 58 328-385 127-184 (328)
440 cd03228 ABCC_MRP_Like The MRP 96.9 0.0082 1.8E-07 55.6 10.7 25 178-202 28-52 (171)
441 cd04139 RalA_RalB RalA/RalB su 96.9 0.036 7.8E-07 50.0 14.9 22 180-201 2-23 (164)
442 PF08298 AAA_PrkA: PrkA AAA do 96.9 0.0017 3.7E-08 66.1 6.5 59 149-209 61-120 (358)
443 PRK14723 flhF flagellar biosyn 96.9 0.022 4.8E-07 64.2 15.8 25 178-202 185-209 (767)
444 COG1134 TagH ABC-type polysacc 96.9 0.0034 7.5E-08 60.5 8.1 24 179-202 54-77 (249)
445 cd03230 ABC_DR_subfamily_A Thi 96.9 0.0061 1.3E-07 56.5 9.6 24 179-202 27-50 (173)
446 PRK14721 flhF flagellar biosyn 96.9 0.043 9.3E-07 58.0 16.9 25 178-202 191-215 (420)
447 TIGR02173 cyt_kin_arch cytidyl 96.9 0.00098 2.1E-08 61.4 4.2 29 180-208 2-30 (171)
448 cd04145 M_R_Ras_like M-Ras/R-R 96.9 0.032 6.9E-07 50.5 14.2 22 180-201 4-25 (164)
449 COG1066 Sms Predicted ATP-depe 96.9 0.014 2.9E-07 60.4 12.4 114 174-300 89-217 (456)
450 cd01672 TMPK Thymidine monopho 96.9 0.0012 2.5E-08 62.4 4.6 35 180-214 2-39 (200)
451 PF13521 AAA_28: AAA domain; P 96.9 0.00091 2E-08 61.4 3.8 26 181-207 2-27 (163)
452 cd03227 ABC_Class2 ABC-type Cl 96.9 0.0079 1.7E-07 55.2 10.0 24 179-202 22-45 (162)
453 smart00072 GuKc Guanylate kina 96.9 0.0087 1.9E-07 56.2 10.5 24 179-202 3-26 (184)
454 PF04665 Pox_A32: Poxvirus A32 96.9 0.039 8.5E-07 53.8 15.1 24 180-203 15-38 (241)
455 PRK12608 transcription termina 96.9 0.0037 8E-08 64.6 8.3 25 179-203 134-158 (380)
456 COG0464 SpoVK ATPases of the A 96.9 0.013 2.9E-07 63.8 13.3 168 174-377 14-190 (494)
457 PRK14526 adenylate kinase; Pro 96.9 0.0011 2.5E-08 63.6 4.4 29 180-208 2-30 (211)
458 PF08433 KTI12: Chromatin asso 96.9 0.008 1.7E-07 59.9 10.5 32 179-210 2-36 (270)
459 cd03286 ABC_MSH6_euk MutS6 hom 96.9 0.032 6.9E-07 53.9 14.4 23 179-201 31-53 (218)
460 cd04137 RheB Rheb (Ras Homolog 96.8 0.032 7E-07 51.6 14.1 23 179-201 2-24 (180)
461 PF00488 MutS_V: MutS domain V 96.8 0.021 4.6E-07 55.8 13.3 23 179-201 44-66 (235)
462 COG1124 DppF ABC-type dipeptid 96.8 0.0098 2.1E-07 57.3 10.4 24 179-202 34-57 (252)
463 cd04138 H_N_K_Ras_like H-Ras/N 96.8 0.012 2.5E-07 53.1 10.8 22 180-201 3-24 (162)
464 cd04119 RJL RJL (RabJ-Like) su 96.8 0.022 4.7E-07 51.7 12.6 22 180-201 2-23 (168)
465 PLN02674 adenylate kinase 96.8 0.0024 5.2E-08 62.6 6.4 30 179-208 32-61 (244)
466 cd01867 Rab8_Rab10_Rab13_like 96.8 0.034 7.3E-07 50.9 13.9 23 179-201 4-26 (167)
467 COG4608 AppF ABC-type oligopep 96.8 0.0092 2E-07 58.6 10.3 110 179-302 40-169 (268)
468 PHA02530 pseT polynucleotide k 96.8 0.0012 2.6E-08 67.0 4.5 29 179-207 3-32 (300)
469 PF13481 AAA_25: AAA domain; P 96.8 0.0078 1.7E-07 56.7 9.8 38 177-214 31-81 (193)
470 TIGR01447 recD exodeoxyribonuc 96.8 0.008 1.7E-07 66.5 11.1 37 179-215 161-204 (586)
471 cd03233 ABC_PDR_domain1 The pl 96.8 0.0086 1.9E-07 57.1 10.0 25 179-203 34-58 (202)
472 cd03237 ABC_RNaseL_inhibitor_d 96.8 0.014 3E-07 57.6 11.7 24 179-202 26-49 (246)
473 PRK10078 ribose 1,5-bisphospho 96.8 0.0012 2.6E-08 62.2 4.0 29 179-207 3-31 (186)
474 COG0529 CysC Adenylylsulfate k 96.8 0.02 4.4E-07 52.4 11.6 35 179-213 24-61 (197)
475 PF00406 ADK: Adenylate kinase 96.8 0.0012 2.7E-08 59.7 3.9 27 183-209 1-27 (151)
476 KOG1808 AAA ATPase containing 96.8 0.0056 1.2E-07 74.0 10.1 141 180-349 442-599 (1856)
477 PRK12339 2-phosphoglycerate ki 96.8 0.0014 3.1E-08 62.2 4.3 28 179-206 4-31 (197)
478 PRK04328 hypothetical protein; 96.8 0.023 5E-07 56.1 13.1 38 174-211 19-59 (249)
479 PRK08233 hypothetical protein; 96.8 0.0017 3.7E-08 60.5 4.8 25 179-203 4-28 (182)
480 TIGR03881 KaiC_arch_4 KaiC dom 96.8 0.026 5.7E-07 54.7 13.3 39 174-212 16-57 (229)
481 COG0563 Adk Adenylate kinase a 96.7 0.0016 3.4E-08 60.9 4.3 26 180-205 2-27 (178)
482 PRK06995 flhF flagellar biosyn 96.7 0.054 1.2E-06 58.2 16.4 24 179-202 257-280 (484)
483 PF13479 AAA_24: AAA domain 96.7 0.0031 6.7E-08 60.8 6.5 20 179-198 4-23 (213)
484 cd04160 Arfrp1 Arfrp1 subfamil 96.7 0.047 1E-06 49.7 14.1 22 181-202 2-23 (167)
485 PRK13406 bchD magnesium chelat 96.7 0.047 1E-06 60.3 16.4 175 179-382 26-226 (584)
486 PF05970 PIF1: PIF1-like helic 96.7 0.0064 1.4E-07 63.6 9.3 35 179-213 23-59 (364)
487 PRK10875 recD exonuclease V su 96.7 0.012 2.5E-07 65.4 11.6 37 179-215 168-210 (615)
488 TIGR02322 phosphon_PhnN phosph 96.7 0.0014 3E-08 61.2 3.8 26 179-204 2-27 (179)
489 cd03229 ABC_Class3 This class 96.7 0.0093 2E-07 55.6 9.4 24 179-202 27-50 (178)
490 cd01130 VirB11-like_ATPase Typ 96.7 0.0016 3.5E-08 61.3 4.2 25 179-203 26-50 (186)
491 COG3283 TyrR Transcriptional r 96.7 0.078 1.7E-06 53.8 16.0 205 146-384 201-430 (511)
492 cd04127 Rab27A Rab27a subfamil 96.7 0.032 6.9E-07 51.6 12.9 23 179-201 5-27 (180)
493 cd03247 ABCC_cytochrome_bd The 96.7 0.018 3.9E-07 53.7 11.1 24 179-202 29-52 (178)
494 TIGR01425 SRP54_euk signal rec 96.7 0.12 2.6E-06 54.8 18.3 35 178-212 100-137 (429)
495 COG1122 CbiO ABC-type cobalt t 96.7 0.019 4.1E-07 56.0 11.5 24 179-202 31-54 (235)
496 TIGR02788 VirB11 P-type DNA tr 96.7 0.005 1.1E-07 62.8 7.9 25 179-203 145-169 (308)
497 PLN02199 shikimate kinase 96.7 0.0021 4.5E-08 64.3 4.9 31 179-209 103-133 (303)
498 TIGR02768 TraA_Ti Ti-type conj 96.7 0.0062 1.3E-07 69.5 9.3 106 179-304 369-477 (744)
499 PRK05907 hypothetical protein; 96.7 0.19 4.2E-06 51.2 19.2 163 237-437 54-221 (311)
500 cd00876 Ras Ras family. The R 96.7 0.017 3.8E-07 51.8 10.7 21 181-201 2-22 (160)
No 1
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=100.00 E-value=3.3e-60 Score=505.33 Aligned_cols=396 Identities=32% Similarity=0.499 Sum_probs=295.1
Q ss_pred CCCCCCcccccCCCCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCC
Q 009072 133 SSTQQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTP 212 (544)
Q Consensus 133 ~~~~~lW~eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s 212 (544)
.+..++|+|||+|++++||++|++++++|+.||+.... +..+.++|||+|||||||||++++||+++|+.++||.+|
T Consensus 3 ~~~~~~W~~ky~P~~~~eLavhkkKv~eV~~wl~~~~~---~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np 79 (519)
T PF03215_consen 3 DDESEPWVEKYAPKTLDELAVHKKKVEEVRSWLEEMFS---GSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEWINP 79 (519)
T ss_pred CcccCccchhcCCCCHHHhhccHHHHHHHHHHHHHHhc---cCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEecCC
Confidence 34678999999999999999999999999999998765 444447999999999999999999999999999999888
Q ss_pred Cch---hhh--hhhhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHHH
Q 009072 213 TPT---IWQ--EYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLL 287 (544)
Q Consensus 213 ~~~---~~~--e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~ 287 (544)
... .+. ++.........+.++...|.+|+.+..+|..+.........+++||||||+|++...+. .++.++|++
T Consensus 80 ~~~~~~~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~~~-~~f~~~L~~ 158 (519)
T PF03215_consen 80 VSFRESDNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHRDT-SRFREALRQ 158 (519)
T ss_pred CCccccccccccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccchhH-HHHHHHHHH
Confidence 652 111 11111111123356677888886666777665433333345688999999999987765 788899999
Q ss_pred HHhcCCC-cEEEEEccCCCCCCCCcc------ccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHHh-----CC-
Q 009072 288 LVRSTHI-PTAVVLTECGKADSVDST------AQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQE-----QY- 354 (544)
Q Consensus 288 ~~~~~~~-piIiI~t~~~~~~~~d~~------~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e-----~~- 354 (544)
++..+.. |+|||++++......+.. ...+.. +.++.++++..|.|||++++.|++.|.+|+..| +.
T Consensus 159 ~l~~~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~-~~il~~~~i~~I~FNpIa~T~mkKaL~rI~~~E~~~~~~~~ 237 (519)
T PF03215_consen 159 YLRSSRCLPLVFIISETESLSGDNSYRSNSFTAERLFP-KEILNHPGITRIKFNPIAPTFMKKALKRILKKEARSSSGKN 237 (519)
T ss_pred HHHcCCCCCEEEEEecccccCCCCcccccchhhhhccC-HHHHhCCCceEEEecCCCHHHHHHHHHHHHHHHhhhhcCCc
Confidence 9999888 999999965322211111 111211 567788899999999999999999999999988 22
Q ss_pred CCC--HHHHHHHHHHcCCcHHHHHHHHHHhccCCCCCccccccC-----C----CCCCCCcc----CCCCCCcccccccc
Q 009072 355 SLS--TEQIDLVAQASGGDIRQAITSLQFSSLKQDPMLNLSLSI-----S----KPNFPEEK----ADGHGGFSIQFGRD 419 (544)
Q Consensus 355 ~i~--~~~l~~Ia~~s~GDiR~aIn~Lq~~~~~~~~~~~~~~~~-----~----~~~~~~~~----~~~~~~~~~~~~rD 419 (544)
..+ .+.|+.|++.++||||+|||+|||+|..+.......+.. . ..+..+++ ..+......+++||
T Consensus 238 ~~p~~~~~l~~I~~~s~GDIRsAIn~LQf~~~~g~~~~~~~k~g~~~~~~~v~~~~ks~~~~~~~~~~~~~~~~~i~~Rd 317 (519)
T PF03215_consen 238 KVPDKQSVLDSIAESSNGDIRSAINNLQFWCLKGDNNLRPKKKGFSLKADAVLSLSKSKRKSKPDTVKEESSLQSIGGRD 317 (519)
T ss_pred cCCChHHHHHHHHHhcCchHHHHHHHHHHHhcCCCCCCCccccCCcccccceeccccCCCcccccccccccccccccccc
Confidence 233 456999999999999999999999999544322111000 0 00011110 11133456789999
Q ss_pred ccchhhHhhhhhhccccCCCccccCCccccccccccccCCCCCCChHHHHHhcCCChHHHHHHHHhcCCCCCccchhhhH
Q 009072 420 ETLSLFHALGKFLHNKRETDNLVKMDQDAFVVKDKFSRLPLKMDAPEKVLSQAHGQARPVLDFLHENCWLDIMRQTMFYN 499 (544)
Q Consensus 420 ~~l~lF~algkil~~Kr~~~~~~~~~~~~~~~~~~~~r~pl~~~~pe~v~~~~~~~~~~~~~~LheNy~~~f~~~~~i~~ 499 (544)
.+|++||||||||||||+.....+...-+. ....+.|.++.++ ||+++++++++.++|.+|||||| ++||.+ |++
T Consensus 318 ~sL~lFHAlGKILynKR~~~~~~~~~~l~~-~l~~~~R~~l~~~-~e~vi~~s~~~~~~f~~~LhENY-~~f~~~--i~~ 392 (519)
T PF03215_consen 318 ESLSLFHALGKILYNKREPDDEVDSERLPS-HLSHHERDPLLVD-PEEVIEESHMDSSTFVLFLHENY-LDFCSD--IED 392 (519)
T ss_pred cchHHHHHhhhheeccccCCCccccccCcc-hhhhcccCccccC-HHHHHHHhcCChHHHHHHHHHhc-cchhhh--HHH
Confidence 999999999999999998875332111111 1224567777664 99999999999999999999999 999966 999
Q ss_pred HHHhhhHhhhhhhhhhhhHHhcC-----------------------------------CCccccchhhHHHHHhhhhccC
Q 009072 500 LLRLQLLLVEYYLEILIQCLLGG-----------------------------------MLFVSQSSGEWTNLLCKKRRSC 544 (544)
Q Consensus 500 ~~~~~~~~~~~ls~~~aD~~~~~-----------------------------------~~~~~q~~~~w~~~~~~~~~~~ 544 (544)
++.+ ++|||+ ||++.+. .-|++.++++|+.+++++|+||
T Consensus 393 ~~~~----~d~LS~--aD~l~~~~~~~~~~~~~~~s~a~rg~~~~n~~~~~~~~~~~~~~~~~~~Kpq~~~~~~~~~~~~ 466 (519)
T PF03215_consen 393 ASDA----SDYLSD--ADLLSSDWESRSSLREYRASVAVRGLMHSNRGKAFFPRQWKMRRFRPLHKPQWFGYYKPYIENC 466 (519)
T ss_pred HHHH----HHHhhH--HHhccCccccchhHHHHHHHHHhhhcchhccCcccCCCcccccccccccchHHHHHHHHHHHHH
Confidence 9999 999999 9988631 1255667789999999999998
No 2
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=100.00 E-value=8.6e-57 Score=459.48 Aligned_cols=400 Identities=33% Similarity=0.494 Sum_probs=321.1
Q ss_pred CCCcCCCCCCCcccccCCCCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEE
Q 009072 128 SASASSSTQQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLY 207 (544)
Q Consensus 128 ~~~~~~~~~~lW~eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~vi 207 (544)
.........++|+|||+|++.+||++|++++.+|+.||+ .+.......+.++|||+||+||||||+++++|+++|+.++
T Consensus 61 l~~~~~d~~elW~eKy~P~t~eeLAVHkkKI~eVk~WL~-~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskelg~~~~ 139 (634)
T KOG1970|consen 61 LNNEKEDEFELWVEKYKPRTLEELAVHKKKISEVKQWLK-QVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKELGYQLI 139 (634)
T ss_pred cCCCCccccchhHHhcCcccHHHHhhhHHhHHHHHHHHH-HHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhhCceee
Confidence 334556678999999999999999999999999999999 3332234445589999999999999999999999999999
Q ss_pred EEeCCCchhhhhhhhccccCcc--cccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHH
Q 009072 208 EWDTPTPTIWQEYMHNCKTGLE--YTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCL 285 (544)
Q Consensus 208 ei~~s~~~~~~e~l~~~~~g~~--~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L 285 (544)
||.+|....+.+.++....+.. +.+.+..|+.|++++.+|..+..+.....+.+++|||||+|+.+..++...+++.|
T Consensus 140 Ew~Npi~~~~~~~~h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~~d~~~~f~evL 219 (634)
T KOG1970|consen 140 EWSNPINLKEPENLHNETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFYRDDSETFREVL 219 (634)
T ss_pred eecCCccccccccccccchhcccchhhHHHHHHHHHHHHHhhchhhhcccccccCceEEEeeccchhhhhhhHHHHHHHH
Confidence 9999998888888887666654 78999999999999988988877766666778999999999998876778888999
Q ss_pred HHHHhcCCCcEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHHhCCCCC------HH
Q 009072 286 LLLVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLS------TE 359 (544)
Q Consensus 286 ~~~~~~~~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~------~~ 359 (544)
+.+...+.+|+|||+|+......++.+......++ .++|+..|.|||++++-|++.|.+||..++...+ ..
T Consensus 220 ~~y~s~g~~PlIf~iTd~~~~g~nnq~rlf~~d~q---~~~ri~~IsFNPIa~T~MKK~L~ric~~e~~~~s~~k~~~~~ 296 (634)
T KOG1970|consen 220 RLYVSIGRCPLIFIITDSLSNGNNNQDRLFPKDIQ---EEPRISNISFNPIAPTIMKKFLKRICRIEANKKSGIKVPDTA 296 (634)
T ss_pred HHHHhcCCCcEEEEEeccccCCCcchhhhchhhhh---hccCcceEeecCCcHHHHHHHHHHHHHHhcccccCCcCchhH
Confidence 99999999999999999887666665555544443 5678999999999999999999999999987766 78
Q ss_pred HHHHHHHHcCCcHHHHHHHHHHhccCCCCCccccccCCCC----CCCCccC---CCCCCccccccccccchhhHhhhhhh
Q 009072 360 QIDLVAQASGGDIRQAITSLQFSSLKQDPMLNLSLSISKP----NFPEEKA---DGHGGFSIQFGRDETLSLFHALGKFL 432 (544)
Q Consensus 360 ~l~~Ia~~s~GDiR~aIn~Lq~~~~~~~~~~~~~~~~~~~----~~~~~~~---~~~~~~~~~~~rD~~l~lF~algkil 432 (544)
.++.||..++||||+|||+|||++..+.......++.+.. +..+.+. ...+.+..+++||+++.+|||+|+++
T Consensus 297 ~v~~i~~~s~GDIRsAInsLQlssskg~~~~~~~ks~rs~~s~~~kg~~~~~~s~~nq~i~~ig~~de~L~~f~al~~~l 376 (634)
T KOG1970|consen 297 EVELICQGSGGDIRSAINSLQLSSSKGENNLRPRKSGRSGKSDIGKGKSKRMESPENQELQSIGGRDESLFLFRALGKVL 376 (634)
T ss_pred HHHHHHHhcCccHHHHHhHhhhhcccCccCCCcccccccccchhhccccccccCchHHHHHHhhcchHHHHHHHhhcccc
Confidence 8999999999999999999999986665444433332221 1111111 11235667899999999999999999
Q ss_pred ccccCCCccccCCccccccccccccCCCCCCChHHHHHhcCCChHHHHHHHHhcCCCCCccchhhhHHHHhhhHhhhhhh
Q 009072 433 HNKRETDNLVKMDQDAFVVKDKFSRLPLKMDAPEKVLSQAHGQARPVLDFLHENCWLDIMRQTMFYNLLRLQLLLVEYYL 512 (544)
Q Consensus 433 ~~Kr~~~~~~~~~~~~~~~~~~~~r~pl~~~~pe~v~~~~~~~~~~~~~~LheNy~~~f~~~~~i~~~~~~~~~~~~~ls 512 (544)
|+||...+....+..+..+ +.+-|.+|+++ ||+|+.+++++++.++.|||+|| ++|+.+ ++++..+ .||+|
T Consensus 377 ~pkr~s~~~~~s~~~~~~~-a~~~r~~L~~~-peevl~~S~~~~~~~v~fl~~N~-~~f~~n--id~i~~~----se~~~ 447 (634)
T KOG1970|consen 377 YPKRNSDNELKSPRSPSHL-AEYERDTLKHE-PEEVLEMSHMQGGNFVRFLHQNY-SDFFSN--IDDIVRA----SEFLS 447 (634)
T ss_pred cccccccccccccCCcchh-hhhhhhhhhcC-chhhhhhcccccchhhhhhhhcc-chhhhc--ccceeee----hhhhh
Confidence 9999887654443333233 56778999988 99999999999999999999999 999987 6776666 66666
Q ss_pred hhhhhHHhc-----------------CCCccccch------hhHHHHHhhhhc
Q 009072 513 EILIQCLLG-----------------GMLFVSQSS------GEWTNLLCKKRR 542 (544)
Q Consensus 513 ~~~aD~~~~-----------------~~~~~~q~~------~~w~~~~~~~~~ 542 (544)
+ ||.+.. ...+..+|. ++||++|+.+|.
T Consensus 448 ~--~d~~s~~w~~~~~L~~~y~~~~a~rsvm~~n~y~~p~~~~~~l~n~p~~s 498 (634)
T KOG1970|consen 448 F--ADQLSGDWNTRQSLLREYRTLIATRSVMNSNKYAHPQGGQWFLINKPYRS 498 (634)
T ss_pred H--HHHhcccchhHHHHHHHHHHHHHHHHhhcccccccccccceeeccccccc
Confidence 6 554431 111344552 489999999997
No 3
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=2e-49 Score=429.36 Aligned_cols=394 Identities=28% Similarity=0.409 Sum_probs=284.0
Q ss_pred CCCCCcccccCCCCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCC
Q 009072 134 STQQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPT 213 (544)
Q Consensus 134 ~~~~lW~eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~ 213 (544)
+...+|++||+|++++||++|++++++|+.|+..... +..+.+.++|+|||||||||+++++|+++++.++||.++.
T Consensus 69 ~~~~pW~eKyrP~~ldel~~~~~ki~~l~~~l~~~~~---~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv 145 (637)
T TIGR00602 69 DGNEPWVEKYKPETQHELAVHKKKIEEVETWLKAQVL---ENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPT 145 (637)
T ss_pred cccCchHHHhCCCCHHHhcCcHHHHHHHHHHHHhccc---ccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhh
Confidence 4567999999999999999999999999999987643 2333467999999999999999999999999999986554
Q ss_pred chhhhhhhhc----cccC-cccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHH-H
Q 009072 214 PTIWQEYMHN----CKTG-LEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLL-L 287 (544)
Q Consensus 214 ~~~~~e~l~~----~~~g-~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~-~ 287 (544)
...+....+. .... ..+.+..+.|..|+..+........ .+..+++.||||||+|++..... ..+++.|+ .
T Consensus 146 ~~~~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g--~~~~~~~~IILIDEiPn~~~r~~-~~lq~lLr~~ 222 (637)
T TIGR00602 146 LPDFQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLG--DDLMTDKKIILVEDLPNQFYRDT-RALHEILRWK 222 (637)
T ss_pred hhcccccccccchhhhhccccccchHHHHHHHHHHHHhhhcccc--cccCCceeEEEeecchhhchhhH-HHHHHHHHHH
Confidence 3222111110 0011 1224667889999988763321110 11124578999999999875432 34455566 5
Q ss_pred HHhcCCCcEEEEEccCCCCCCCC-ccccchHHH--HHHHhhcCceeEEecCCCHHHHHHHHHHHHHHhCCC-------CC
Q 009072 288 LVRSTHIPTAVVLTECGKADSVD-STAQSFEEL--QSILVDAGARKVALNPITNGSIKRTLSKICRQEQYS-------LS 357 (544)
Q Consensus 288 ~~~~~~~piIiI~t~~~~~~~~d-~~~~~l~~l--~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~-------i~ 357 (544)
+.+.+..|+|+|++++.....+. ........+ +++++++++.+|.|+|+++++|.++|.+|+..++.. .+
T Consensus 223 ~~e~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv~~I~FnPia~t~l~K~L~rIl~~E~~~~~~~~~~p~ 302 (637)
T TIGR00602 223 YVSIGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRVSNISFNPIAPTIMKKFLNRIVTIEAKKNGEKIKVPK 302 (637)
T ss_pred hhcCCCceEEEEecCCccccccccccccchhcccCHhHhcccceeEEEeCCCCHHHHHHHHHHHHHhhhhccccccccCC
Confidence 67788889999999764432211 011111111 577777789999999999999999999999987532 25
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHHhccCCCCCccccc-cC----CCCCCCC----ccCCCCCCccccccccccchhhHhh
Q 009072 358 TEQIDLVAQASGGDIRQAITSLQFSSLKQDPMLNLSL-SI----SKPNFPE----EKADGHGGFSIQFGRDETLSLFHAL 428 (544)
Q Consensus 358 ~~~l~~Ia~~s~GDiR~aIn~Lq~~~~~~~~~~~~~~-~~----~~~~~~~----~~~~~~~~~~~~~~rD~~l~lF~al 428 (544)
+++++.|+..++||||+|||+|||+|.+++....... +. ...++.. ....+.+++..+++||.+|++|||+
T Consensus 303 ~~~l~~I~~~s~GDiRsAIn~LQf~~~~~g~~a~~~~~~~vs~~hv~~a~~k~~~~t~~e~~~l~~~~~rd~sl~lfhal 382 (637)
T TIGR00602 303 KTSVELLCQGCSGDIRSAINSLQFSSSKSGSLPIKKRMSTKSDAHASKSKIKGKHSSNNENQEIQALGGKDVSLFLFRAL 382 (637)
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHhcCCccccccccccccHHHhhhccccCCCCCchhHHHHHhhccccchhHHHHHh
Confidence 6899999999999999999999999886532111000 00 0001000 0011134455689999999999999
Q ss_pred hhhhccccCCCccccCCccccccccccccCCCCCCChHHHHHhcCCChH-HHHHHHHhcCCCCCccchhhhHHHHhhhHh
Q 009072 429 GKFLHNKRETDNLVKMDQDAFVVKDKFSRLPLKMDAPEKVLSQAHGQAR-PVLDFLHENCWLDIMRQTMFYNLLRLQLLL 507 (544)
Q Consensus 429 gkil~~Kr~~~~~~~~~~~~~~~~~~~~r~pl~~~~pe~v~~~~~~~~~-~~~~~LheNy~~~f~~~~~i~~~~~~~~~~ 507 (544)
|||||+||...+.......+ ...+.+.|.++ ++.||++++.++++.. +|..|||||| ++|+.+ +++++.+
T Consensus 383 gkily~Kr~~~~~~~~~~~p-~~l~~~~r~~l-~~~~~~v~e~~~~~~~~~f~~~lheny-~~f~~~--~~~~~~~---- 453 (637)
T TIGR00602 383 GKILYCKRATLNELDSPRLP-SHLSELSRDTL-MVGPEEVVEMSHMPGDKTFNLYSHQNY-NDFFVE--FDDEVKA---- 453 (637)
T ss_pred ChhhcccccCccccccCccc-hhhhhhcccch-hcChHhhhhhccccHHHHHHHHHhccc-chhhhh--hhHHHHH----
Confidence 99999999987543322111 13355667666 4679999999999998 9999999999 999987 9999999
Q ss_pred hhhhhhhhhhHHhcCC-----------------------------------CccccchhhHHHHHhhhhccC
Q 009072 508 VEYYLEILIQCLLGGM-----------------------------------LFVSQSSGEWTNLLCKKRRSC 544 (544)
Q Consensus 508 ~~~ls~~~aD~~~~~~-----------------------------------~~~~q~~~~w~~~~~~~~~~~ 544 (544)
.+|||+ ||++...+ -|++.++++|+.++++||+||
T Consensus 454 ~~~ls~--~D~l~~d~~~~~l~~~~~~~~~~r~~m~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 523 (637)
T TIGR00602 454 SEFLNF--ADILSGDWNTRSLLREYSTSSARRGVMHSNKARGIAHCQGGKSSFRPLHKPQWFLISKKYRENC 523 (637)
T ss_pred HHHhhH--HHhcccchhhhhhhcccceeeeeeeEEEecCCccchhcccCccccccccchhhhhhhHHHHHHH
Confidence 999999 99998332 466666789999999999998
No 4
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=100.00 E-value=2.9e-41 Score=354.61 Aligned_cols=327 Identities=17% Similarity=0.236 Sum_probs=254.2
Q ss_pred CCCCcccccCCCCcchhccChHHHHHHHHHHHHhhcC--------------------------CCCCCCccEEEEEcCCC
Q 009072 135 TQQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGD--------------------------SKDKFSTNVLVITGQAG 188 (544)
Q Consensus 135 ~~~lW~eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~--------------------------~~g~~~~~~lLL~GPpG 188 (544)
...||||||+|+.|.||++++.+.+++..||+.|... +.++|+.+++||+||||
T Consensus 257 h~kLWVdky~Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppG 336 (877)
T KOG1969|consen 257 HDKLWVDKYRPKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPG 336 (877)
T ss_pred CcceeecccChhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCC
Confidence 4459999999999999999999999999999999531 12678889999999999
Q ss_pred CcHHHHHHHHHHHhCCeEEEEeCCCchhhhhhhhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEec
Q 009072 189 VGKTATVRQIASHLGARLYEWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDD 268 (544)
Q Consensus 189 ~GKTtla~~lA~elg~~viei~~s~~~~~~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDE 268 (544)
.||||+||++|++.||.++|+|++|.|.. ..+++.++.+-... +..+..++|.|+||||
T Consensus 337 lGKTTLAHViAkqaGYsVvEINASDeRt~-----------------~~v~~kI~~avq~~----s~l~adsrP~CLViDE 395 (877)
T KOG1969|consen 337 LGKTTLAHVIAKQAGYSVVEINASDERTA-----------------PMVKEKIENAVQNH----SVLDADSRPVCLVIDE 395 (877)
T ss_pred CChhHHHHHHHHhcCceEEEecccccccH-----------------HHHHHHHHHHHhhc----cccccCCCcceEEEec
Confidence 99999999999999999999999997632 23444444443332 2334457899999999
Q ss_pred CCCCCchhHHHHHHHHHHHHHhc-----------------------CCCcEEEEEccCCCCCCCCccccchHHHHHHHhh
Q 009072 269 LPVTNGRTAFERLRQCLLLLVRS-----------------------THIPTAVVLTECGKADSVDSTAQSFEELQSILVD 325 (544)
Q Consensus 269 id~l~~~~~~~~~~~~L~~~~~~-----------------------~~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r 325 (544)
||+.. ..+.+.|+.+++. -..|+||||++ .|++.|++|+++
T Consensus 396 IDGa~-----~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNd--------LYaPaLR~Lr~~--- 459 (877)
T KOG1969|consen 396 IDGAP-----RAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICND--------LYAPALRPLRPF--- 459 (877)
T ss_pred ccCCc-----HHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecC--------ccchhhhhcccc---
Confidence 99964 2334455555441 12499999965 678888888774
Q ss_pred cCceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHhccCCCCCccccccCCCCCCCCcc
Q 009072 326 AGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIRQAITSLQFSSLKQDPMLNLSLSISKPNFPEEK 405 (544)
Q Consensus 326 ~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~l~~Ia~~s~GDiR~aIn~Lq~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (544)
+.+|.|.||++..+.++|+.||.+|++.++..+|..||+.+++|||+|||+|||++.+.+...... + .+
T Consensus 460 --A~ii~f~~p~~s~Lv~RL~~IC~rE~mr~d~~aL~~L~el~~~DIRsCINtLQfLa~~~~r~ds~i-~------~~-- 528 (877)
T KOG1969|consen 460 --AEIIAFVPPSQSRLVERLNEICHRENMRADSKALNALCELTQNDIRSCINTLQFLASNVDRRDSSI-S------VK-- 528 (877)
T ss_pred --eEEEEecCCChhHHHHHHHHHHhhhcCCCCHHHHHHHHHHhcchHHHHHHHHHHHHHhcccccccc-h------hh--
Confidence 899999999999999999999999999999999999999999999999999999998766532210 0 00
Q ss_pred CCCCCCccccccccccchhhHhhhhhhccccCCCccccCCccccccccccccCCCCCCChHHHHHhcCCChHHHHHHHHh
Q 009072 406 ADGHGGFSIQFGRDETLSLFHALGKFLHNKRETDNLVKMDQDAFVVKDKFSRLPLKMDAPEKVLSQAHGQARPVLDFLHE 485 (544)
Q Consensus 406 ~~~~~~~~~~~~rD~~l~lF~algkil~~Kr~~~~~~~~~~~~~~~~~~~~r~pl~~~~pe~v~~~~~~~~~~~~~~Lhe 485 (544)
.......+.+|.+.++|.-|-.||.-.|...... ..+.+.- .+ -....++..+.++++++.
T Consensus 529 ---~i~a~~~~~k~~~~slf~~w~ei~ql~k~~~~r~--------~~~~l~~-------l~-~~~~l~~~servlqg~f~ 589 (877)
T KOG1969|consen 529 ---LICAKNVGAKSNSDSLFSWWKEIFQLRKKDRHRS--------IDEQLYG-------LL-NQVELHGNSERVLQGCFS 589 (877)
T ss_pred ---hhhhhhhcccccccchHHHHHHHHHHhhcccccc--------hHHHhhh-------hh-hhhhccCchHHHHhhhhc
Confidence 1112355788999999999999998766543110 0111100 01 112456778889999999
Q ss_pred cCCCCCccchhhhHHHHhhhHhhhhhhhhhhhHHhcCCCccccchhhHHH
Q 009072 486 NCWLDIMRQTMFYNLLRLQLLLVEYYLEILIQCLLGGMLFVSQSSGEWTN 535 (544)
Q Consensus 486 Ny~~~f~~~~~i~~~~~~~~~~~~~ls~~~aD~~~~~~~~~~q~~~~w~~ 535 (544)
||+-.+|.|-.|...+.+ ++||-+ =|.+. +..+..|||.+|+-
T Consensus 590 ~~~~~~~~D~~i~~~~~~----s~WL~F--~D~l~-~~~~s~qn~eLlrY 632 (877)
T KOG1969|consen 590 IFLRLKYSDLGIGKPANA----SDWLFF--HDLLY-QSMYSHQNWELLRY 632 (877)
T ss_pred cccccccccccccchhhh----hhHHHh--hhHHH-HHHHhcCCeeeccc
Confidence 998788888889999999 999999 99998 89999999998864
No 5
>PRK04195 replication factor C large subunit; Provisional
Probab=100.00 E-value=6.1e-39 Score=345.24 Aligned_cols=306 Identities=22% Similarity=0.352 Sum_probs=237.3
Q ss_pred CCcccccCCCCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCCchh
Q 009072 137 QLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTI 216 (544)
Q Consensus 137 ~lW~eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~~~~ 216 (544)
.+|+|||+|++++||+|+++.+++|..|+..|.. |.++ +++||+|||||||||+|+++|+++++.++++++++.+.
T Consensus 2 ~~W~eKyrP~~l~dlvg~~~~~~~l~~~l~~~~~---g~~~-~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~ 77 (482)
T PRK04195 2 MPWVEKYRPKTLSDVVGNEKAKEQLREWIESWLK---GKPK-KALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRT 77 (482)
T ss_pred CCchhhcCCCCHHHhcCCHHHHHHHHHHHHHHhc---CCCC-CeEEEECCCCCCHHHHHHHHHHHcCCCEEEEccccccc
Confidence 5899999999999999999999999999999874 5543 89999999999999999999999999999999876431
Q ss_pred hhhhhhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHHHHHhcCCCcE
Q 009072 217 WQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPT 296 (544)
Q Consensus 217 ~~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~~~~~~~~pi 296 (544)
...+..++..+.....+. + .++.||||||+|.+..... ....+.|..+++....|+
T Consensus 78 -----------------~~~i~~~i~~~~~~~sl~----~--~~~kvIiIDEaD~L~~~~d-~~~~~aL~~~l~~~~~~i 133 (482)
T PRK04195 78 -----------------ADVIERVAGEAATSGSLF----G--ARRKLILLDEVDGIHGNED-RGGARAILELIKKAKQPI 133 (482)
T ss_pred -----------------HHHHHHHHHHhhccCccc----C--CCCeEEEEecCcccccccc-hhHHHHHHHHHHcCCCCE
Confidence 123444554443332221 1 2467999999999876322 233456778888888899
Q ss_pred EEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHH
Q 009072 297 AVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIRQAI 376 (544)
Q Consensus 297 IiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~l~~Ia~~s~GDiR~aI 376 (544)
|+++++.. ... .+++.+ +|..|.|++|+..++..+|..+|..+++.+++++++.|++.++||+|.||
T Consensus 134 Ili~n~~~--------~~~---~k~Lrs--r~~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~GDlR~ai 200 (482)
T PRK04195 134 ILTANDPY--------DPS---LRELRN--ACLMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGGDLRSAI 200 (482)
T ss_pred EEeccCcc--------ccc---hhhHhc--cceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHH
Confidence 88876532 111 122322 48999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCCCccccccCCCCCCCCccCCCCCCccccccccccchhhHhhhhhhccccCCCccccCCccccccccccc
Q 009072 377 TSLQFSSLKQDPMLNLSLSISKPNFPEEKADGHGGFSIQFGRDETLSLFHALGKFLHNKRETDNLVKMDQDAFVVKDKFS 456 (544)
Q Consensus 377 n~Lq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rD~~l~lF~algkil~~Kr~~~~~~~~~~~~~~~~~~~~ 456 (544)
|.||.++.+..... .........||...++|+++++||+++....
T Consensus 201 n~Lq~~a~~~~~it------------------~~~v~~~~~~d~~~~if~~l~~i~~~k~~~~----------------- 245 (482)
T PRK04195 201 NDLQAIAEGYGKLT------------------LEDVKTLGRRDREESIFDALDAVFKARNADQ----------------- 245 (482)
T ss_pred HHHHHHhcCCCCCc------------------HHHHHHhhcCCCCCCHHHHHHHHHCCCCHHH-----------------
Confidence 99999765332211 1111223458999999999999999775421
Q ss_pred cCCCCCCChHHHHHhcCCChHHHHHHHHhcCCCCCccchhhhHHHHhhhHhhhhhhhhhhhHHhcCCCccccchhhHHHH
Q 009072 457 RLPLKMDAPEKVLSQAHGQARPVLDFLHENCWLDIMRQTMFYNLLRLQLLLVEYYLEILIQCLLGGMLFVSQSSGEWTNL 536 (544)
Q Consensus 457 r~pl~~~~pe~v~~~~~~~~~~~~~~LheNy~~~f~~~~~i~~~~~~~~~~~~~ls~~~aD~~~~~~~~~~q~~~~w~~~ 536 (544)
.-..+.....+++.++.|||||| +..|.+ +++++.+ +++||. ||++. +.+.++|+|.+|.-.
T Consensus 246 --------a~~~~~~~~~~~~~i~~~l~en~-~~~~~~--~~~~~~a----~~~ls~--ad~~~-~~~~~~~~~~l~~~~ 307 (482)
T PRK04195 246 --------ALEASYDVDEDPDDLIEWIDENI-PKEYDD--PEDIARA----YDALSR--ADIFL-GRVKRTQNYDLWRYA 307 (482)
T ss_pred --------HHHHHHcccCCHHHHHHHHHhcc-ccccCC--HHHHHHH----HHHHhH--HHHHH-HHHHhcCCcchHHHH
Confidence 01223345678999999999999 777766 6788888 999999 99999 788899999999653
No 6
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.97 E-value=1.4e-29 Score=244.05 Aligned_cols=211 Identities=22% Similarity=0.393 Sum_probs=157.4
Q ss_pred CCCCcccccCCCCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhCC------eEEE
Q 009072 135 TQQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGA------RLYE 208 (544)
Q Consensus 135 ~~~lW~eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg~------~vie 208 (544)
....|++||+|++++|+++++..+..|+..+... .. +++|||||||||||++|+++|+++.. .+++
T Consensus 22 ~~~swteKYrPkt~de~~gQe~vV~~L~~a~~~~------~l--p~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~ 93 (346)
T KOG0989|consen 22 KHRSWTEKYRPKTFDELAGQEHVVQVLKNALLRR------IL--PHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLE 93 (346)
T ss_pred CccchHHHhCCCcHHhhcchHHHHHHHHHHHhhc------CC--ceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhh
Confidence 5677999999999999999999999999888762 22 58999999999999999999999865 4678
Q ss_pred EeCCCchhhhhhhhccccCcccc-cchHHHHHHHHHHHhhcCCCCCCCCC-CCCceEEEEecCCCCCchhHHHHHHHHHH
Q 009072 209 WDTPTPTIWQEYMHNCKTGLEYT-SKLDEFENFVERIRRYGSTSPSIPGE-SKSSAILLIDDLPVTNGRTAFERLRQCLL 286 (544)
Q Consensus 209 i~~s~~~~~~e~l~~~~~g~~~~-s~~~~~~~~l~~~~~~~~l~~~~~~~-~~~~~vIlIDEid~l~~~~~~~~~~~~L~ 286 (544)
.|+++.+ |+... .....|........ ...+. ....+||||||+|.|.. ..+.+|+
T Consensus 94 lnaSder-----------Gisvvr~Kik~fakl~~~~~-------~~~~~~~~~fKiiIlDEcdsmts-----daq~aLr 150 (346)
T KOG0989|consen 94 LNASDER-----------GISVVREKIKNFAKLTVLLK-------RSDGYPCPPFKIIILDECDSMTS-----DAQAALR 150 (346)
T ss_pred hcccccc-----------cccchhhhhcCHHHHhhccc-------cccCCCCCcceEEEEechhhhhH-----HHHHHHH
Confidence 8888743 44322 11122222221110 01111 23348999999999864 3456677
Q ss_pred HHHhcC-CCcEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Q 009072 287 LLVRST-HIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVA 365 (544)
Q Consensus 287 ~~~~~~-~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~l~~Ia 365 (544)
+.++.. +.-.+|+++++.. +. ++++.+| |..++|.++..+.+..+|+.||.+||+.+++++++.|+
T Consensus 151 r~mE~~s~~trFiLIcnyls--------ri---i~pi~SR--C~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~ 217 (346)
T KOG0989|consen 151 RTMEDFSRTTRFILICNYLS--------RI---IRPLVSR--CQKFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIA 217 (346)
T ss_pred HHHhccccceEEEEEcCChh--------hC---ChHHHhh--HHHhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 777773 3334455554321 11 2455554 99999999999999999999999999999999999999
Q ss_pred HHcCCcHHHHHHHHHHhccCCCCC
Q 009072 366 QASGGDIRQAITSLQFSSLKQDPM 389 (544)
Q Consensus 366 ~~s~GDiR~aIn~Lq~~~~~~~~~ 389 (544)
+.|+||+|.||+.||-++..+...
T Consensus 218 ~~S~GdLR~Ait~Lqsls~~gk~I 241 (346)
T KOG0989|consen 218 KISDGDLRRAITTLQSLSLLGKRI 241 (346)
T ss_pred HHcCCcHHHHHHHHHHhhccCccc
Confidence 999999999999999999855443
No 7
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.96 E-value=3.1e-28 Score=225.50 Aligned_cols=206 Identities=20% Similarity=0.357 Sum_probs=154.1
Q ss_pred CCCCCcccccCCCCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHh-C----CeEEE
Q 009072 134 STQQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL-G----ARLYE 208 (544)
Q Consensus 134 ~~~~lW~eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~el-g----~~vie 208 (544)
....+|+|||+|..+.|++|++..+++|.-+.++ |.. ++++|+|||||||||.+.++|+++ | --++|
T Consensus 12 ~~~l~wVeKYrP~~l~dIVGNe~tv~rl~via~~------gnm--P~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLE 83 (333)
T KOG0991|consen 12 KYQLPWVEKYRPSVLQDIVGNEDTVERLSVIAKE------GNM--PNLIISGPPGTGKTTSILCLARELLGDSYKEAVLE 83 (333)
T ss_pred cccchHHHhhCchHHHHhhCCHHHHHHHHHHHHc------CCC--CceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhh
Confidence 3455699999999999999999999999887776 666 489999999999999999999997 3 24789
Q ss_pred EeCCCchhhhhhhhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHHHH
Q 009072 209 WDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLL 288 (544)
Q Consensus 209 i~~s~~~~~~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~~ 288 (544)
+|+++. +|++... ..++.|.++- ..++ .++.+||++||+|.|... .+++|+..
T Consensus 84 LNASde-----------RGIDvVR--n~IK~FAQ~k---v~lp------~grhKIiILDEADSMT~g-----AQQAlRRt 136 (333)
T KOG0991|consen 84 LNASDE-----------RGIDVVR--NKIKMFAQKK---VTLP------PGRHKIIILDEADSMTAG-----AQQALRRT 136 (333)
T ss_pred ccCccc-----------cccHHHH--HHHHHHHHhh---ccCC------CCceeEEEeeccchhhhH-----HHHHHHHH
Confidence 999984 4554321 2233333321 1111 256789999999998542 23344443
Q ss_pred Hhc--CCCcEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 009072 289 VRS--THIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQ 366 (544)
Q Consensus 289 ~~~--~~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~l~~Ia~ 366 (544)
++- ......+.|+.. ....+++++ ||..++|..+++.++.++|..+++.|++.++++.+++|+.
T Consensus 137 MEiyS~ttRFalaCN~s---------~KIiEPIQS-----RCAiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiif 202 (333)
T KOG0991|consen 137 MEIYSNTTRFALACNQS---------EKIIEPIQS-----RCAILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAIIF 202 (333)
T ss_pred HHHHcccchhhhhhcch---------hhhhhhHHh-----hhHhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhhh
Confidence 332 222334445432 234444443 4999999999999999999999999999999999999999
Q ss_pred HcCCcHHHHHHHHHHhccCCCC
Q 009072 367 ASGGDIRQAITSLQFSSLKQDP 388 (544)
Q Consensus 367 ~s~GDiR~aIn~Lq~~~~~~~~ 388 (544)
.++||+|+|+|+||....+.+.
T Consensus 203 ta~GDMRQalNnLQst~~g~g~ 224 (333)
T KOG0991|consen 203 TAQGDMRQALNNLQSTVNGFGL 224 (333)
T ss_pred hccchHHHHHHHHHHHhccccc
Confidence 9999999999999998765443
No 8
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.95 E-value=2.1e-26 Score=240.87 Aligned_cols=217 Identities=14% Similarity=0.264 Sum_probs=155.9
Q ss_pred CCCCcccccCCCCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCC-
Q 009072 135 TQQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPT- 213 (544)
Q Consensus 135 ~~~lW~eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~- 213 (544)
....|.+||||++|+|++|++..++.|..++.. ++.+ +.+||+|||||||||+|+++|+.+++.-.....+.
T Consensus 4 ~~~~L~~KyRP~~f~dvVGQe~iv~~L~~~i~~------~ri~-ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg 76 (484)
T PRK14956 4 THEVLSRKYRPQFFRDVIHQDLAIGALQNALKS------GKIG-HAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCN 76 (484)
T ss_pred CcchhHHHhCCCCHHHHhChHHHHHHHHHHHHc------CCCC-eEEEEECCCCCCHHHHHHHHHHhcCcccccCccccC
Confidence 356799999999999999999999999999876 4543 67999999999999999999999986411000000
Q ss_pred ch-hhhhhhhccccC---cc--cccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHHH
Q 009072 214 PT-IWQEYMHNCKTG---LE--YTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLL 287 (544)
Q Consensus 214 ~~-~~~e~l~~~~~g---~~--~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~ 287 (544)
.+ ............ +. .....+.++++.+.+.... ..++.+|+||||+|.++.. .+++|++
T Consensus 77 ~C~sC~~i~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p--------~~g~~KV~IIDEah~Ls~~-----A~NALLK 143 (484)
T PRK14956 77 ECTSCLEITKGISSDVLEIDAASNRGIENIRELRDNVKFAP--------MGGKYKVYIIDEVHMLTDQ-----SFNALLK 143 (484)
T ss_pred CCcHHHHHHccCCccceeechhhcccHHHHHHHHHHHHhhh--------hcCCCEEEEEechhhcCHH-----HHHHHHH
Confidence 00 000000000000 00 0112356666666554221 1135789999999998653 3467888
Q ss_pred HHhcCCCcEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 009072 288 LVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQA 367 (544)
Q Consensus 288 ~~~~~~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~l~~Ia~~ 367 (544)
.++.....++||.+++.. ...+.++++| |..+.|.+++.+++.++|.++|..+|+.++++++..|++.
T Consensus 144 tLEEPp~~viFILaTte~----------~kI~~TI~SR--Cq~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~ 211 (484)
T PRK14956 144 TLEEPPAHIVFILATTEF----------HKIPETILSR--CQDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKK 211 (484)
T ss_pred HhhcCCCceEEEeecCCh----------hhccHHHHhh--hheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 888877777777655321 1112456665 9999999999999999999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHhc
Q 009072 368 SGGDIRQAITSLQFSS 383 (544)
Q Consensus 368 s~GDiR~aIn~Lq~~~ 383 (544)
++||+|.|++.|+.+.
T Consensus 212 S~Gd~RdAL~lLeq~i 227 (484)
T PRK14956 212 GDGSVRDMLSFMEQAI 227 (484)
T ss_pred cCChHHHHHHHHHHHH
Confidence 9999999999997643
No 9
>PLN03025 replication factor C subunit; Provisional
Probab=99.95 E-value=2.3e-26 Score=235.37 Aligned_cols=199 Identities=19% Similarity=0.342 Sum_probs=146.8
Q ss_pred CcccccCCCCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhC-----CeEEEEeCC
Q 009072 138 LWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLG-----ARLYEWDTP 212 (544)
Q Consensus 138 lW~eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg-----~~viei~~s 212 (544)
+|+|||||++++|++|++..++.|+.|+.. +.. +++||+|||||||||+|+++|+++. ..+++++++
T Consensus 2 ~w~~kyrP~~l~~~~g~~~~~~~L~~~~~~------~~~--~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~s 73 (319)
T PLN03025 2 PWVEKYRPTKLDDIVGNEDAVSRLQVIARD------GNM--PNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNAS 73 (319)
T ss_pred ChhhhcCCCCHHHhcCcHHHHHHHHHHHhc------CCC--ceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeeccc
Confidence 699999999999999999999999888764 444 4699999999999999999999972 347788876
Q ss_pred CchhhhhhhhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHHHHHhcC
Q 009072 213 TPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRST 292 (544)
Q Consensus 213 ~~~~~~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~~~~~~ 292 (544)
+.+ +. +.+++.+........ .. ..++++|++|||+|.++... +++|+..++..
T Consensus 74 d~~-----------~~------~~vr~~i~~~~~~~~---~~--~~~~~kviiiDE~d~lt~~a-----q~aL~~~lE~~ 126 (319)
T PLN03025 74 DDR-----------GI------DVVRNKIKMFAQKKV---TL--PPGRHKIVILDEADSMTSGA-----QQALRRTMEIY 126 (319)
T ss_pred ccc-----------cH------HHHHHHHHHHHhccc---cC--CCCCeEEEEEechhhcCHHH-----HHHHHHHHhcc
Confidence 632 21 233333333221110 00 11347899999999987532 35566666653
Q ss_pred C--CcEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC
Q 009072 293 H--IPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGG 370 (544)
Q Consensus 293 ~--~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~l~~Ia~~s~G 370 (544)
. ..+|++|+.. ... ++++.+| |..++|.+++.+++.++|..++.++|+.+++++++.|++.++|
T Consensus 127 ~~~t~~il~~n~~---------~~i---~~~L~SR--c~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~g 192 (319)
T PLN03025 127 SNTTRFALACNTS---------SKI---IEPIQSR--CAIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADG 192 (319)
T ss_pred cCCceEEEEeCCc---------ccc---chhHHHh--hhcccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 2 2233333321 111 2444444 8899999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHhccC
Q 009072 371 DIRQAITSLQFSSLK 385 (544)
Q Consensus 371 DiR~aIn~Lq~~~~~ 385 (544)
|+|.++|.||.++..
T Consensus 193 DlR~aln~Lq~~~~~ 207 (319)
T PLN03025 193 DMRQALNNLQATHSG 207 (319)
T ss_pred CHHHHHHHHHHHHhc
Confidence 999999999976643
No 10
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.94 E-value=5.6e-26 Score=243.36 Aligned_cols=249 Identities=19% Similarity=0.260 Sum_probs=167.9
Q ss_pred CCcccccCCCCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCCchh
Q 009072 137 QLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTI 216 (544)
Q Consensus 137 ~lW~eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~~~~ 216 (544)
..|.+||||++|+|++|++..++.|..|+.. |+.+ +.+||+||||+||||+|+++|+.+++.- .....++.
T Consensus 3 ~~LarKyRPktFddVIGQe~vv~~L~~aI~~------grl~-HAyLF~GPpGvGKTTlAriLAK~LnC~~--~~~~~pCg 73 (702)
T PRK14960 3 QVLARKYRPRNFNELVGQNHVSRALSSALER------GRLH-HAYLFTGTRGVGKTTIARILAKCLNCET--GVTSTPCE 73 (702)
T ss_pred hhHHHHhCCCCHHHhcCcHHHHHHHHHHHHc------CCCC-eEEEEECCCCCCHHHHHHHHHHHhCCCc--CCCCCCCc
Confidence 3588999999999999999999999999975 5555 7899999999999999999999998631 01111110
Q ss_pred hhhhhhccccC--c-------ccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHHH
Q 009072 217 WQEYMHNCKTG--L-------EYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLL 287 (544)
Q Consensus 217 ~~e~l~~~~~g--~-------~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~ 287 (544)
....+.....| . ......+.++++++.+.... ..++.+|+||||++.++.. ..++|++
T Consensus 74 ~C~sC~~I~~g~hpDviEIDAAs~~~VddIReli~~~~y~P--------~~gk~KV~IIDEVh~LS~~-----A~NALLK 140 (702)
T PRK14960 74 VCATCKAVNEGRFIDLIEIDAASRTKVEDTRELLDNVPYAP--------TQGRFKVYLIDEVHMLSTH-----SFNALLK 140 (702)
T ss_pred cCHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhhh--------hcCCcEEEEEechHhcCHH-----HHHHHHH
Confidence 00000000000 0 00123466777777654221 1135789999999998753 2356788
Q ss_pred HHhcCCCcEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 009072 288 LVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQA 367 (544)
Q Consensus 288 ~~~~~~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~l~~Ia~~ 367 (544)
.++.....+.||.+++.. +. .+.++++| |..+.|.+++..++.++|.+++.++|+.++++++..|++.
T Consensus 141 tLEEPP~~v~FILaTtd~--------~k--Ip~TIlSR--Cq~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~ 208 (702)
T PRK14960 141 TLEEPPEHVKFLFATTDP--------QK--LPITVISR--CLQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAES 208 (702)
T ss_pred HHhcCCCCcEEEEEECCh--------Hh--hhHHHHHh--hheeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 888765444444433211 11 12455554 9999999999999999999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHhccCCCCCccccccCCCCCCCCccCCCCCCccccccccccchhhHhhhhhhcccc
Q 009072 368 SGGDIRQAITSLQFSSLKQDPMLNLSLSISKPNFPEEKADGHGGFSIQFGRDETLSLFHALGKFLHNKR 436 (544)
Q Consensus 368 s~GDiR~aIn~Lq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rD~~l~lF~algkil~~Kr 436 (544)
++||+|.|+|.|..++..++..... .......+..|.. .+|+.+..|+.++.
T Consensus 209 S~GdLRdALnLLDQaIayg~g~IT~----------------edV~~lLG~~d~e-~IfdLldAI~k~d~ 260 (702)
T PRK14960 209 AQGSLRDALSLTDQAIAYGQGAVHH----------------QDVKEMLGLIDRT-IIYDLILAVHQNQR 260 (702)
T ss_pred cCCCHHHHHHHHHHHHHhcCCCcCH----------------HHHHHHhccCCHH-HHHHHHHHHHhcCH
Confidence 9999999999985543322211110 1111233444444 58888888777643
No 11
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.94 E-value=4.1e-26 Score=246.47 Aligned_cols=212 Identities=20% Similarity=0.322 Sum_probs=150.5
Q ss_pred CCcccccCCCCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCCchh
Q 009072 137 QLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTI 216 (544)
Q Consensus 137 ~lW~eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~~~~ 216 (544)
..|.+||||++|+||+|++..++.|++|+.. |+.+ +.+||+||+|+||||+++++|+.+++.--. ...++.
T Consensus 4 ~vLarKYRPqtFdEVIGQe~Vv~~L~~aL~~------gRL~-HAyLFtGPpGvGKTTlAriLAKaLnCe~~~--~~~PCG 74 (830)
T PRK07003 4 QVLARKWRPKDFASLVGQEHVVRALTHALDG------GRLH-HAYLFTGTRGVGKTTLSRIFAKALNCETGV--TSQPCG 74 (830)
T ss_pred HhHHHHhCCCcHHHHcCcHHHHHHHHHHHhc------CCCC-eEEEEECCCCCCHHHHHHHHHHHhcCccCC--CCCCCc
Confidence 4589999999999999999999999999875 5554 778999999999999999999999864210 001110
Q ss_pred hhhhhhccccC-------c--ccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHHH
Q 009072 217 WQEYMHNCKTG-------L--EYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLL 287 (544)
Q Consensus 217 ~~e~l~~~~~g-------~--~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~ 287 (544)
....+..+..+ + ......+.++++++.+. +.. ...+.+||||||+|.++.. .++.|++
T Consensus 75 ~C~sCr~I~~G~h~DviEIDAas~rgVDdIReLIe~a~-~~P-------~~gr~KVIIIDEah~LT~~-----A~NALLK 141 (830)
T PRK07003 75 VCRACREIDEGRFVDYVEMDAASNRGVDEMAALLERAV-YAP-------VDARFKVYMIDEVHMLTNH-----AFNAMLK 141 (830)
T ss_pred ccHHHHHHhcCCCceEEEecccccccHHHHHHHHHHHH-hcc-------ccCCceEEEEeChhhCCHH-----HHHHHHH
Confidence 00000000000 0 00122356777777654 221 1245789999999999653 2456777
Q ss_pred HHhcCCCcEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 009072 288 LVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQA 367 (544)
Q Consensus 288 ~~~~~~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~l~~Ia~~ 367 (544)
.+++....++||+++++. . ..+..+++| |..|.|.+++.++|.++|.+|+..|++.++++.+..|++.
T Consensus 142 tLEEPP~~v~FILaTtd~--------~--KIp~TIrSR--Cq~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~ 209 (830)
T PRK07003 142 TLEEPPPHVKFILATTDP--------Q--KIPVTVLSR--CLQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARA 209 (830)
T ss_pred HHHhcCCCeEEEEEECCh--------h--hccchhhhh--eEEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 888765444444433221 1 113455665 9999999999999999999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHh
Q 009072 368 SGGDIRQAITSLQFS 382 (544)
Q Consensus 368 s~GDiR~aIn~Lq~~ 382 (544)
++||+|.+|+.|+..
T Consensus 210 A~GsmRdALsLLdQA 224 (830)
T PRK07003 210 AQGSMRDALSLTDQA 224 (830)
T ss_pred cCCCHHHHHHHHHHH
Confidence 999999999996543
No 12
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.93 E-value=3.6e-25 Score=237.68 Aligned_cols=214 Identities=21% Similarity=0.318 Sum_probs=153.4
Q ss_pred CCcccccCCCCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCCchh
Q 009072 137 QLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTI 216 (544)
Q Consensus 137 ~lW~eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~~~~ 216 (544)
..|++||||++|+|++|++..++.|..++.. ++.+ +.+||+||||+||||+|+++|+.+++.-- ....++.
T Consensus 4 ~~l~~kyRP~~f~divGq~~v~~~L~~~~~~------~~l~-ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~--~~~~pCg 74 (509)
T PRK14958 4 QVLARKWRPRCFQEVIGQAPVVRALSNALDQ------QYLH-HAYLFTGTRGVGKTTISRILAKCLNCEKG--VSANPCN 74 (509)
T ss_pred hhHHHHHCCCCHHHhcCCHHHHHHHHHHHHh------CCCC-eeEEEECCCCCCHHHHHHHHHHHhcCCCC--CCcccCC
Confidence 5699999999999999999999999999976 5554 77899999999999999999999976410 0011110
Q ss_pred hhhhhhccccC---------cccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHHH
Q 009072 217 WQEYMHNCKTG---------LEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLL 287 (544)
Q Consensus 217 ~~e~l~~~~~g---------~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~ 287 (544)
....+.....| .......+.++++++.+. |.. ..++.+|+||||+|.++.. ..++|++
T Consensus 75 ~C~~C~~i~~g~~~d~~eidaas~~~v~~iR~l~~~~~-~~p-------~~~~~kV~iIDE~~~ls~~-----a~naLLk 141 (509)
T PRK14958 75 DCENCREIDEGRFPDLFEVDAASRTKVEDTRELLDNIP-YAP-------TKGRFKVYLIDEVHMLSGH-----SFNALLK 141 (509)
T ss_pred CCHHHHHHhcCCCceEEEEcccccCCHHHHHHHHHHHh-hcc-------ccCCcEEEEEEChHhcCHH-----HHHHHHH
Confidence 00000000000 001123466777777654 221 1245789999999998753 2356788
Q ss_pred HHhcCCCcEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 009072 288 LVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQA 367 (544)
Q Consensus 288 ~~~~~~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~l~~Ia~~ 367 (544)
.++..+..++||..++.. + ..+..+++| |..++|.+++..++.++|.+++..+|+.+++++++.|++.
T Consensus 142 ~LEepp~~~~fIlattd~--------~--kl~~tI~SR--c~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~ 209 (509)
T PRK14958 142 TLEEPPSHVKFILATTDH--------H--KLPVTVLSR--CLQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARA 209 (509)
T ss_pred HHhccCCCeEEEEEECCh--------H--hchHHHHHH--hhhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 888765555555433211 1 122345555 8999999999999999999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHhcc
Q 009072 368 SGGDIRQAITSLQFSSL 384 (544)
Q Consensus 368 s~GDiR~aIn~Lq~~~~ 384 (544)
++||+|.|++.|+..+.
T Consensus 210 s~GslR~al~lLdq~ia 226 (509)
T PRK14958 210 ANGSVRDALSLLDQSIA 226 (509)
T ss_pred cCCcHHHHHHHHHHHHh
Confidence 99999999999965443
No 13
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.93 E-value=8.1e-25 Score=218.69 Aligned_cols=201 Identities=26% Similarity=0.413 Sum_probs=159.5
Q ss_pred CCcccccCCCCcchhccChHHHHH---HHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCC
Q 009072 137 QLWAEKYKPRSLEELAVQRKKVEE---VRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPT 213 (544)
Q Consensus 137 ~lW~eky~P~~~~dLv~~~~~~~~---l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~ 213 (544)
.++.++.||++++|++|++..+.+ |.+.++. |.. ..++|||||||||||+|++||+..++.+..+++-
T Consensus 12 ~PLA~rmRP~~lde~vGQ~HLlg~~~~lrr~v~~------~~l--~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv- 82 (436)
T COG2256 12 MPLAERLRPKSLDEVVGQEHLLGEGKPLRRAVEA------GHL--HSMILWGPPGTGKTTLARLIAGTTNAAFEALSAV- 82 (436)
T ss_pred cChHHHhCCCCHHHhcChHhhhCCCchHHHHHhc------CCC--ceeEEECCCCCCHHHHHHHHHHhhCCceEEeccc-
Confidence 478999999999999999988754 3444433 555 6899999999999999999999999999999873
Q ss_pred chhhhhhhhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHHHHHhcCC
Q 009072 214 PTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTH 293 (544)
Q Consensus 214 ~~~~~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~~~~~~~ 293 (544)
..|+ ++++.+++++++... .+++.|||||||++++.. -+++|+..++.+
T Consensus 83 -----------~~gv------kdlr~i~e~a~~~~~--------~gr~tiLflDEIHRfnK~-----QQD~lLp~vE~G- 131 (436)
T COG2256 83 -----------TSGV------KDLREIIEEARKNRL--------LGRRTILFLDEIHRFNKA-----QQDALLPHVENG- 131 (436)
T ss_pred -----------cccH------HHHHHHHHHHHHHHh--------cCCceEEEEehhhhcChh-----hhhhhhhhhcCC-
Confidence 2333 778999999876642 256789999999997542 236788999887
Q ss_pred CcEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHHh--CCC-----CCHHHHHHHHH
Q 009072 294 IPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQE--QYS-----LSTEQIDLVAQ 366 (544)
Q Consensus 294 ~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e--~~~-----i~~~~l~~Ia~ 366 (544)
-+++|.+++. ++.++...++++| |.++.|.|++.+++.++|++.+..+ ++. +++++++.|+.
T Consensus 132 -~iilIGATTE--------NPsF~ln~ALlSR--~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~ 200 (436)
T COG2256 132 -TIILIGATTE--------NPSFELNPALLSR--ARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVR 200 (436)
T ss_pred -eEEEEeccCC--------CCCeeecHHHhhh--hheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHH
Confidence 3456655432 2345555777776 9999999999999999999955443 443 78999999999
Q ss_pred HcCCcHHHHHHHHHHhccCCCC
Q 009072 367 ASGGDIRQAITSLQFSSLKQDP 388 (544)
Q Consensus 367 ~s~GDiR~aIn~Lq~~~~~~~~ 388 (544)
.++||.|.++|.|+++....+.
T Consensus 201 ~s~GD~R~aLN~LE~~~~~~~~ 222 (436)
T COG2256 201 LSNGDARRALNLLELAALSAEP 222 (436)
T ss_pred hcCchHHHHHHHHHHHHHhcCC
Confidence 9999999999999999876544
No 14
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.93 E-value=1.8e-24 Score=228.98 Aligned_cols=199 Identities=22% Similarity=0.339 Sum_probs=154.1
Q ss_pred CcccccCCCCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhCCe------------
Q 009072 138 LWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGAR------------ 205 (544)
Q Consensus 138 lW~eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~------------ 205 (544)
-|..||||++|+|++|++..++.|..++.. |+.+ +.+||+||+|+||||+|+++|+.+++.
T Consensus 2 ~la~KyRP~~f~dliGQe~vv~~L~~a~~~------~ri~-ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~ 74 (491)
T PRK14964 2 NLALKYRPSSFKDLVGQDVLVRILRNAFTL------NKIP-QSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCH 74 (491)
T ss_pred ChhHHhCCCCHHHhcCcHHHHHHHHHHHHc------CCCC-ceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccH
Confidence 378999999999999999999998888765 6665 799999999999999999999987543
Q ss_pred ------------EEEEeCCCchhhhhhhhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCC
Q 009072 206 ------------LYEWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTN 273 (544)
Q Consensus 206 ------------viei~~s~~~~~~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~ 273 (544)
++++++++ ....+.++++++.+...+ . ..+++|+||||++.++
T Consensus 75 ~C~~i~~~~~~Dv~eidaas-----------------~~~vddIR~Iie~~~~~P-~-------~~~~KVvIIDEah~Ls 129 (491)
T PRK14964 75 NCISIKNSNHPDVIEIDAAS-----------------NTSVDDIKVILENSCYLP-I-------SSKFKVYIIDEVHMLS 129 (491)
T ss_pred HHHHHhccCCCCEEEEeccc-----------------CCCHHHHHHHHHHHHhcc-c-------cCCceEEEEeChHhCC
Confidence 23333221 112367788887764322 1 1457899999999986
Q ss_pred chhHHHHHHHHHHHHHhcCCCcEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHHhC
Q 009072 274 GRTAFERLRQCLLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQ 353 (544)
Q Consensus 274 ~~~~~~~~~~~L~~~~~~~~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e~ 353 (544)
.. ..++|++.++..+..++||.+++.. .. .+..+.+| |..+.|.+++..++.++|.+++.++|
T Consensus 130 ~~-----A~NaLLK~LEePp~~v~fIlatte~--------~K--l~~tI~SR--c~~~~f~~l~~~el~~~L~~ia~~Eg 192 (491)
T PRK14964 130 NS-----AFNALLKTLEEPAPHVKFILATTEV--------KK--IPVTIISR--CQRFDLQKIPTDKLVEHLVDIAKKEN 192 (491)
T ss_pred HH-----HHHHHHHHHhCCCCCeEEEEEeCCh--------HH--HHHHHHHh--heeeecccccHHHHHHHHHHHHHHcC
Confidence 53 2367888888876656555544211 11 12345554 99999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHcCCcHHHHHHHHHHhccC
Q 009072 354 YSLSTEQIDLVAQASGGDIRQAITSLQFSSLK 385 (544)
Q Consensus 354 ~~i~~~~l~~Ia~~s~GDiR~aIn~Lq~~~~~ 385 (544)
+.+++++++.|++.++||+|.+++.|+.++..
T Consensus 193 i~i~~eAL~lIa~~s~GslR~alslLdqli~y 224 (491)
T PRK14964 193 IEHDEESLKLIAENSSGSMRNALFLLEQAAIY 224 (491)
T ss_pred CCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999877653
No 15
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.93 E-value=1.4e-24 Score=232.08 Aligned_cols=214 Identities=20% Similarity=0.284 Sum_probs=152.2
Q ss_pred CCcccccCCCCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEE-Ee--CCC
Q 009072 137 QLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYE-WD--TPT 213 (544)
Q Consensus 137 ~lW~eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~vie-i~--~s~ 213 (544)
..|.+||||++|+||+|++..++.|.+++.. |+.+ +.+||+||+|+||||+|+.+|+.+++.--. .. .+.
T Consensus 4 ~vLarKYRPqtFddVIGQe~vv~~L~~al~~------gRLp-HA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~ 76 (700)
T PRK12323 4 QVLARKWRPRDFTTLVGQEHVVRALTHALEQ------QRLH-HAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQ 76 (700)
T ss_pred hhHHHHhCCCcHHHHcCcHHHHHHHHHHHHh------CCCc-eEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCC
Confidence 4689999999999999999999999999987 5554 788999999999999999999999873100 00 000
Q ss_pred chhhhhhhhccccC-----c----ccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHH
Q 009072 214 PTIWQEYMHNCKTG-----L----EYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQC 284 (544)
Q Consensus 214 ~~~~~e~l~~~~~g-----~----~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~ 284 (544)
++.....+..+..| + ......+.++++++.+.... ..++.+|+||||+|.|+.. ..+.
T Consensus 77 PCG~C~sC~~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P--------~~gr~KViIIDEah~Ls~~-----AaNA 143 (700)
T PRK12323 77 PCGQCRACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAP--------TAGRFKVYMIDEVHMLTNH-----AFNA 143 (700)
T ss_pred CCcccHHHHHHHcCCCCcceEecccccCCHHHHHHHHHHHHhch--------hcCCceEEEEEChHhcCHH-----HHHH
Confidence 11000000000000 0 00123466777777654221 1245789999999999753 2367
Q ss_pred HHHHHhcCCCcEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHH
Q 009072 285 LLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLV 364 (544)
Q Consensus 285 L~~~~~~~~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~l~~I 364 (544)
|++.+++....++||+.++. .-..+..+++| |..+.|.+++.+++.++|.+++..+++.+++++++.|
T Consensus 144 LLKTLEEPP~~v~FILaTte----------p~kLlpTIrSR--Cq~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~I 211 (700)
T PRK12323 144 MLKTLEEPPEHVKFILATTD----------PQKIPVTVLSR--CLQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLL 211 (700)
T ss_pred HHHhhccCCCCceEEEEeCC----------hHhhhhHHHHH--HHhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 88888875544444433321 11123556665 9999999999999999999999999999999999999
Q ss_pred HHHcCCcHHHHHHHHHHh
Q 009072 365 AQASGGDIRQAITSLQFS 382 (544)
Q Consensus 365 a~~s~GDiR~aIn~Lq~~ 382 (544)
+..++|++|.+++.|+..
T Consensus 212 A~~A~Gs~RdALsLLdQa 229 (700)
T PRK12323 212 AQAAQGSMRDALSLTDQA 229 (700)
T ss_pred HHHcCCCHHHHHHHHHHH
Confidence 999999999999998653
No 16
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.92 E-value=2.6e-24 Score=236.78 Aligned_cols=213 Identities=21% Similarity=0.301 Sum_probs=155.3
Q ss_pred CCcccccCCCCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCCchh
Q 009072 137 QLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTI 216 (544)
Q Consensus 137 ~lW~eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~~~~ 216 (544)
..|.+||||++|+|++|++..++.|++++.. |+.+ +.+||+|||||||||+|+++|+.+++.-. ++. .++.
T Consensus 4 ~~LaeKyRP~tFddIIGQe~Iv~~LknaI~~------~rl~-HAyLFtGPpGtGKTTLARiLAk~Lnce~~-~~~-~pCg 74 (944)
T PRK14949 4 QVLARKWRPATFEQMVGQSHVLHALTNALTQ------QRLH-HAYLFTGTRGVGKTSLARLFAKGLNCEQG-VTA-TPCG 74 (944)
T ss_pred hhHHHHhCCCCHHHhcCcHHHHHHHHHHHHh------CCCC-eEEEEECCCCCCHHHHHHHHHHhccCccC-CCC-CCCC
Confidence 4689999999999999999999999999876 5554 67899999999999999999999987521 110 0110
Q ss_pred hhhhhhccccC-------c--ccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHHH
Q 009072 217 WQEYMHNCKTG-------L--EYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLL 287 (544)
Q Consensus 217 ~~e~l~~~~~g-------~--~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~ 287 (544)
....+.....+ + ......+.++.+++.+.... ..++.+||||||++.|.. ..+++|++
T Consensus 75 ~C~sC~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P--------~~gk~KViIIDEAh~LT~-----eAqNALLK 141 (944)
T PRK14949 75 VCSSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRP--------SRGRFKVYLIDEVHMLSR-----SSFNALLK 141 (944)
T ss_pred CchHHHHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhh--------hcCCcEEEEEechHhcCH-----HHHHHHHH
Confidence 00000000000 0 00123466777777654221 124578999999999864 24467888
Q ss_pred HHhcCCCcEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 009072 288 LVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQA 367 (544)
Q Consensus 288 ~~~~~~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~l~~Ia~~ 367 (544)
.++..+..++||++++.. .. .+..+++| |.+++|.+++.+++.++|.+++..+++.+++++++.|+..
T Consensus 142 tLEEPP~~vrFILaTTe~--------~k--Ll~TIlSR--Cq~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~ 209 (944)
T PRK14949 142 TLEEPPEHVKFLLATTDP--------QK--LPVTVLSR--CLQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKA 209 (944)
T ss_pred HHhccCCCeEEEEECCCc--------hh--chHHHHHh--heEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 899876666666554321 11 23456665 9999999999999999999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHhc
Q 009072 368 SGGDIRQAITSLQFSS 383 (544)
Q Consensus 368 s~GDiR~aIn~Lq~~~ 383 (544)
++||+|.|++.|+...
T Consensus 210 S~Gd~R~ALnLLdQal 225 (944)
T PRK14949 210 ANGSMRDALSLTDQAI 225 (944)
T ss_pred cCCCHHHHHHHHHHHH
Confidence 9999999999996544
No 17
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.92 E-value=8.4e-24 Score=224.88 Aligned_cols=198 Identities=18% Similarity=0.304 Sum_probs=148.4
Q ss_pred CcccccCCCCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhCCe------------
Q 009072 138 LWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGAR------------ 205 (544)
Q Consensus 138 lW~eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~------------ 205 (544)
.|.+||||++++|++|++..++.|+.++.. ++.+ +.+||+|||||||||+|+++|+.+++.
T Consensus 3 ~l~~kyRP~~~~divGq~~i~~~L~~~i~~------~~l~-~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~ 75 (472)
T PRK14962 3 ALYRKYRPKTFSEVVGQDHVKKLIINALKK------NSIS-HAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECR 75 (472)
T ss_pred hhHHHHCCCCHHHccCcHHHHHHHHHHHHc------CCCC-eEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccH
Confidence 578999999999999999999888887765 5554 679999999999999999999998763
Q ss_pred ------------EEEEeCCCchhhhhhhhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCC
Q 009072 206 ------------LYEWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTN 273 (544)
Q Consensus 206 ------------viei~~s~~~~~~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~ 273 (544)
+++++++. ....+.++.+.+.+..... .+++.||||||++.+.
T Consensus 76 ~c~~i~~g~~~dv~el~aa~-----------------~~gid~iR~i~~~~~~~p~--------~~~~kVvIIDE~h~Lt 130 (472)
T PRK14962 76 ACRSIDEGTFMDVIELDAAS-----------------NRGIDEIRKIRDAVGYRPM--------EGKYKVYIIDEVHMLT 130 (472)
T ss_pred HHHHHhcCCCCccEEEeCcc-----------------cCCHHHHHHHHHHHhhChh--------cCCeEEEEEEChHHhH
Confidence 33333221 1123556666655432211 1346799999999875
Q ss_pred chhHHHHHHHHHHHHHhcCCCcEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHHhC
Q 009072 274 GRTAFERLRQCLLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQ 353 (544)
Q Consensus 274 ~~~~~~~~~~~L~~~~~~~~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e~ 353 (544)
.. .++.|+..++.....+++|+++++. ....+++.+| |..+.|.|++..++..+|++++..++
T Consensus 131 ~~-----a~~~LLk~LE~p~~~vv~Ilattn~----------~kl~~~L~SR--~~vv~f~~l~~~el~~~L~~i~~~eg 193 (472)
T PRK14962 131 KE-----AFNALLKTLEEPPSHVVFVLATTNL----------EKVPPTIISR--CQVIEFRNISDELIIKRLQEVAEAEG 193 (472)
T ss_pred HH-----HHHHHHHHHHhCCCcEEEEEEeCCh----------HhhhHHHhcC--cEEEEECCccHHHHHHHHHHHHHHcC
Confidence 32 3456777777755445555443211 0112445554 88999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHcCCcHHHHHHHHHHhcc
Q 009072 354 YSLSTEQIDLVAQASGGDIRQAITSLQFSSL 384 (544)
Q Consensus 354 ~~i~~~~l~~Ia~~s~GDiR~aIn~Lq~~~~ 384 (544)
+.+++++++.|++.++||+|.++|.|+.++.
T Consensus 194 i~i~~eal~~Ia~~s~GdlR~aln~Le~l~~ 224 (472)
T PRK14962 194 IEIDREALSFIAKRASGGLRDALTMLEQVWK 224 (472)
T ss_pred CCCCHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999998764
No 18
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.92 E-value=1.1e-23 Score=227.87 Aligned_cols=214 Identities=19% Similarity=0.262 Sum_probs=155.4
Q ss_pred CcccccCCCCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCCchhh
Q 009072 138 LWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIW 217 (544)
Q Consensus 138 lW~eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~~~~~ 217 (544)
.|.+||||++|+|++|++..++.|+.++.. |+.+ +.+||+||+||||||+|+++|+.+++.-- ....++..
T Consensus 2 al~~kyRP~~f~eivGq~~i~~~L~~~i~~------~r~~-ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~--~~~~pCg~ 72 (584)
T PRK14952 2 ALYRKYRPATFAEVVGQEHVTEPLSSALDA------GRIN-HAYLFSGPRGCGKTSSARILARSLNCAQG--PTATPCGV 72 (584)
T ss_pred cHHHHhCCCcHHHhcCcHHHHHHHHHHHHc------CCCC-eEEEEECCCCCCHHHHHHHHHHHhccccC--CCCCcccc
Confidence 366999999999999999999999999876 5654 67899999999999999999999876310 00011110
Q ss_pred hhhhhcccc---C------c--ccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHH
Q 009072 218 QEYMHNCKT---G------L--EYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLL 286 (544)
Q Consensus 218 ~e~l~~~~~---g------~--~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~ 286 (544)
.+.+..... + + ......+.++++.+.+.... ...+.+|+||||++.++.. .+++|+
T Consensus 73 C~~C~~i~~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P--------~~~~~KVvIIDEah~Lt~~-----A~NALL 139 (584)
T PRK14952 73 CESCVALAPNGPGSIDVVELDAASHGGVDDTRELRDRAFYAP--------AQSRYRIFIVDEAHMVTTA-----GFNALL 139 (584)
T ss_pred cHHHHHhhcccCCCceEEEeccccccCHHHHHHHHHHHHhhh--------hcCCceEEEEECCCcCCHH-----HHHHHH
Confidence 000000000 0 0 01113466777666654221 1135779999999999753 346788
Q ss_pred HHHhcCCCcEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 009072 287 LLVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQ 366 (544)
Q Consensus 287 ~~~~~~~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~l~~Ia~ 366 (544)
+.++.....++||+.++.. -..+.++.+| |..+.|.+++.+++.++|.++|..+|+.++++++..|+.
T Consensus 140 K~LEEpp~~~~fIL~tte~----------~kll~TI~SR--c~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~ 207 (584)
T PRK14952 140 KIVEEPPEHLIFIFATTEP----------EKVLPTIRSR--THHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIR 207 (584)
T ss_pred HHHhcCCCCeEEEEEeCCh----------HhhHHHHHHh--ceEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 8888877666666554321 1223455555 999999999999999999999999999999999999999
Q ss_pred HcCCcHHHHHHHHHHhccC
Q 009072 367 ASGGDIRQAITSLQFSSLK 385 (544)
Q Consensus 367 ~s~GDiR~aIn~Lq~~~~~ 385 (544)
.++||+|.++|.|+.++..
T Consensus 208 ~s~GdlR~aln~Ldql~~~ 226 (584)
T PRK14952 208 AGGGSPRDTLSVLDQLLAG 226 (584)
T ss_pred HcCCCHHHHHHHHHHHHhc
Confidence 9999999999999987654
No 19
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.92 E-value=6.6e-24 Score=230.41 Aligned_cols=215 Identities=20% Similarity=0.314 Sum_probs=152.8
Q ss_pred CCcccccCCCCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEE-eC--CC
Q 009072 137 QLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEW-DT--PT 213 (544)
Q Consensus 137 ~lW~eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei-~~--s~ 213 (544)
..|.+||||++|+|++|++..++.|.+++.. ++.+ +.+||+||+|+||||+|+++|+.+++.--.. .. ..
T Consensus 4 ~vla~KyRP~~f~dviGQe~vv~~L~~~l~~------~rl~-ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~ 76 (618)
T PRK14951 4 LVLARKYRPRSFSEMVGQEHVVQALTNALTQ------QRLH-HAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITAT 76 (618)
T ss_pred HHHHHHHCCCCHHHhcCcHHHHHHHHHHHHc------CCCC-eEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCC
Confidence 4689999999999999999999999999886 5554 7789999999999999999999998631100 00 01
Q ss_pred chhhhhhhhccccC-------c--ccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHH
Q 009072 214 PTIWQEYMHNCKTG-------L--EYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQC 284 (544)
Q Consensus 214 ~~~~~e~l~~~~~g-------~--~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~ 284 (544)
++.....+..+..| + ......+.++++++.+. +.. ..++.+|+||||+|.++... .+.
T Consensus 77 pCg~C~~C~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~-~~p-------~~g~~KV~IIDEvh~Ls~~a-----~Na 143 (618)
T PRK14951 77 PCGVCQACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAV-YKP-------VQGRFKVFMIDEVHMLTNTA-----FNA 143 (618)
T ss_pred CCCccHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHH-hCc-------ccCCceEEEEEChhhCCHHH-----HHH
Confidence 11000011000000 0 00123456777777653 221 12457899999999997542 356
Q ss_pred HHHHHhcCCCcEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHH
Q 009072 285 LLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLV 364 (544)
Q Consensus 285 L~~~~~~~~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~l~~I 364 (544)
|++.+++....++||+.++.. ...+..+++| |..++|.+++.+++.++|.+++.++|+.++++++..|
T Consensus 144 LLKtLEEPP~~~~fIL~Ttd~----------~kil~TIlSR--c~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~L 211 (618)
T PRK14951 144 MLKTLEEPPEYLKFVLATTDP----------QKVPVTVLSR--CLQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLL 211 (618)
T ss_pred HHHhcccCCCCeEEEEEECCc----------hhhhHHHHHh--ceeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 778888765554444433211 1123455665 9999999999999999999999999999999999999
Q ss_pred HHHcCCcHHHHHHHHHHhc
Q 009072 365 AQASGGDIRQAITSLQFSS 383 (544)
Q Consensus 365 a~~s~GDiR~aIn~Lq~~~ 383 (544)
+..++||+|.+++.|+..+
T Consensus 212 a~~s~GslR~al~lLdq~i 230 (618)
T PRK14951 212 ARAARGSMRDALSLTDQAI 230 (618)
T ss_pred HHHcCCCHHHHHHHHHHHH
Confidence 9999999999999986443
No 20
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.92 E-value=1.4e-23 Score=223.90 Aligned_cols=219 Identities=19% Similarity=0.236 Sum_probs=156.6
Q ss_pred CCCCCcccccCCCCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCC-
Q 009072 134 STQQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTP- 212 (544)
Q Consensus 134 ~~~~lW~eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s- 212 (544)
..-..|.+||+|++|+|++|++..++.|...+.. ++.+ +.+||+|||||||||+|+++|+.+++.-.....+
T Consensus 6 ~~y~~la~kyRP~~f~dliGq~~vv~~L~~ai~~------~ri~-~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~ 78 (507)
T PRK06645 6 NQYIPFARKYRPSNFAELQGQEVLVKVLSYTILN------DRLA-GGYLLTGIRGVGKTTSARIIAKAVNCSALITENTT 78 (507)
T ss_pred ccccchhhhhCCCCHHHhcCcHHHHHHHHHHHHc------CCCC-ceEEEECCCCCCHHHHHHHHHHHhcCccccccCcC
Confidence 3457899999999999999999999999887765 5554 7999999999999999999999997642111100
Q ss_pred -CchhhhhhhhccccC---------cccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHH
Q 009072 213 -TPTIWQEYMHNCKTG---------LEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLR 282 (544)
Q Consensus 213 -~~~~~~e~l~~~~~g---------~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~ 282 (544)
.++.....+.....+ .......+.++++++.+...+. .++++|+||||++.++.. .+
T Consensus 79 ~~~C~~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~--------~~~~KVvIIDEa~~Ls~~-----a~ 145 (507)
T PRK06645 79 IKTCEQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPL--------QGKHKIFIIDEVHMLSKG-----AF 145 (507)
T ss_pred cCCCCCChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccc--------cCCcEEEEEEChhhcCHH-----HH
Confidence 000000000000000 0011234678888877643321 135789999999998642 23
Q ss_pred HHHHHHHhcCCCcEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHH
Q 009072 283 QCLLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQID 362 (544)
Q Consensus 283 ~~L~~~~~~~~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~l~ 362 (544)
+.|++.++.....++||..++.. . ..+.++.+| |..+.|.+++..++.++|.+++.++|+.+++++++
T Consensus 146 naLLk~LEepp~~~vfI~aTte~--------~--kI~~tI~SR--c~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~ 213 (507)
T PRK06645 146 NALLKTLEEPPPHIIFIFATTEV--------Q--KIPATIISR--CQRYDLRRLSFEEIFKLLEYITKQENLKTDIEALR 213 (507)
T ss_pred HHHHHHHhhcCCCEEEEEEeCCh--------H--HhhHHHHhc--ceEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 56777777766566666544211 1 112344454 89999999999999999999999999999999999
Q ss_pred HHHHHcCCcHHHHHHHHHHhcc
Q 009072 363 LVAQASGGDIRQAITSLQFSSL 384 (544)
Q Consensus 363 ~Ia~~s~GDiR~aIn~Lq~~~~ 384 (544)
.|++.++||+|.|++.|+.++.
T Consensus 214 ~Ia~~s~GslR~al~~Ldkai~ 235 (507)
T PRK06645 214 IIAYKSEGSARDAVSILDQAAS 235 (507)
T ss_pred HHHHHcCCCHHHHHHHHHHHHH
Confidence 9999999999999999988754
No 21
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.92 E-value=4.7e-24 Score=230.75 Aligned_cols=214 Identities=17% Similarity=0.315 Sum_probs=150.8
Q ss_pred CCcccccCCCCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCCchh
Q 009072 137 QLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTI 216 (544)
Q Consensus 137 ~lW~eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~~~~ 216 (544)
..|.+||||++|+||+|++..++.|+.|+.. ++.+ +.+||+||+||||||+|+++|+.+++.-.....++.
T Consensus 4 ~vLarKYRP~tFddIIGQe~vv~~L~~ai~~------~rl~-Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg-- 74 (709)
T PRK08691 4 QVLARKWRPKTFADLVGQEHVVKALQNALDE------GRLH-HAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCG-- 74 (709)
T ss_pred hhHHHHhCCCCHHHHcCcHHHHHHHHHHHHc------CCCC-eEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCc--
Confidence 4689999999999999999999999999886 5554 789999999999999999999998765211111110
Q ss_pred hhhhhhccccC-------c--ccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHHH
Q 009072 217 WQEYMHNCKTG-------L--EYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLL 287 (544)
Q Consensus 217 ~~e~l~~~~~g-------~--~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~ 287 (544)
....+.....| + ......+.++++++.+..... ..+.+||||||++.++.. ..+.|++
T Consensus 75 ~C~sCr~i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~--------~gk~KVIIIDEad~Ls~~-----A~NALLK 141 (709)
T PRK08691 75 VCQSCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPT--------AGKYKVYIIDEVHMLSKS-----AFNAMLK 141 (709)
T ss_pred ccHHHHHHhccCccceEEEeccccCCHHHHHHHHHHHHhhhh--------hCCcEEEEEECccccCHH-----HHHHHHH
Confidence 00000000000 0 011223567777765532211 135689999999998642 2356777
Q ss_pred HHhcCCCcEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 009072 288 LVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQA 367 (544)
Q Consensus 288 ~~~~~~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~l~~Ia~~ 367 (544)
.++.....++||++++.. + ..+..+++| |..+.|.+++..++.++|.+++.++|+.++++++..|++.
T Consensus 142 tLEEPp~~v~fILaTtd~--------~--kL~~TIrSR--C~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~ 209 (709)
T PRK08691 142 TLEEPPEHVKFILATTDP--------H--KVPVTVLSR--CLQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRA 209 (709)
T ss_pred HHHhCCCCcEEEEEeCCc--------c--ccchHHHHH--HhhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHH
Confidence 777654444344332211 1 112345554 8999999999999999999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHhcc
Q 009072 368 SGGDIRQAITSLQFSSL 384 (544)
Q Consensus 368 s~GDiR~aIn~Lq~~~~ 384 (544)
++||+|.+++.|+.++.
T Consensus 210 A~GslRdAlnLLDqaia 226 (709)
T PRK08691 210 AAGSMRDALSLLDQAIA 226 (709)
T ss_pred hCCCHHHHHHHHHHHHH
Confidence 99999999999976554
No 22
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.91 E-value=1.3e-23 Score=225.32 Aligned_cols=214 Identities=21% Similarity=0.288 Sum_probs=151.5
Q ss_pred CCcccccCCCCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCCchh
Q 009072 137 QLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTI 216 (544)
Q Consensus 137 ~lW~eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~~~~ 216 (544)
..|.+||||++|+|++|++..++.|..++.. ++.+ +.+||+||||+||||+|+.+|+.+.+.--. ..+++.
T Consensus 4 ~~La~KyRP~~f~diiGq~~~v~~L~~~i~~------~rl~-ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~--~~~pCg 74 (546)
T PRK14957 4 QALARKYRPQSFAEVAGQQHALNSLVHALET------QKVH-HAYLFTGTRGVGKTTLGRLLAKCLNCKTGV--TAEPCN 74 (546)
T ss_pred hhHHHHHCcCcHHHhcCcHHHHHHHHHHHHc------CCCC-eEEEEECCCCCCHHHHHHHHHHHhCCCCCC--CCCCCc
Confidence 4689999999999999999999999998876 4444 679999999999999999999998753110 000100
Q ss_pred hhhhhhcccc----C---cc--cccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHHH
Q 009072 217 WQEYMHNCKT----G---LE--YTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLL 287 (544)
Q Consensus 217 ~~e~l~~~~~----g---~~--~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~ 287 (544)
....+..... . +. .....+.++.+++.+.... ..++++|+||||++.++.. .++.|++
T Consensus 75 ~C~sC~~i~~~~~~dlieidaas~~gvd~ir~ii~~~~~~p--------~~g~~kViIIDEa~~ls~~-----a~naLLK 141 (546)
T PRK14957 75 KCENCVAINNNSFIDLIEIDAASRTGVEETKEILDNIQYMP--------SQGRYKVYLIDEVHMLSKQ-----SFNALLK 141 (546)
T ss_pred ccHHHHHHhcCCCCceEEeecccccCHHHHHHHHHHHHhhh--------hcCCcEEEEEechhhccHH-----HHHHHHH
Confidence 0000000000 0 00 0112355666766654322 1135679999999998653 3467888
Q ss_pred HHhcCCCcEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 009072 288 LVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQA 367 (544)
Q Consensus 288 ~~~~~~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~l~~Ia~~ 367 (544)
.++..+..++||..++. ....+.++++| |..++|.+++.+++.++|.+++.++|+.+++++++.|++.
T Consensus 142 ~LEepp~~v~fIL~Ttd----------~~kil~tI~SR--c~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~ 209 (546)
T PRK14957 142 TLEEPPEYVKFILATTD----------YHKIPVTILSR--CIQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYH 209 (546)
T ss_pred HHhcCCCCceEEEEECC----------hhhhhhhHHHh--eeeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 88886544444433321 11122345554 9999999999999999999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHhcc
Q 009072 368 SGGDIRQAITSLQFSSL 384 (544)
Q Consensus 368 s~GDiR~aIn~Lq~~~~ 384 (544)
++||+|.|+|.|+.++.
T Consensus 210 s~GdlR~alnlLek~i~ 226 (546)
T PRK14957 210 AKGSLRDALSLLDQAIS 226 (546)
T ss_pred cCCCHHHHHHHHHHHHH
Confidence 99999999999997664
No 23
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.91 E-value=1.4e-23 Score=218.16 Aligned_cols=217 Identities=19% Similarity=0.255 Sum_probs=151.6
Q ss_pred CCcccccCCCCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCCch-
Q 009072 137 QLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPT- 215 (544)
Q Consensus 137 ~lW~eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~~~- 215 (544)
..|.+||||++|+|++||+..++.++.++.. |+.+ +.+||+||||+||||+|+++|+++.+....-..|...
T Consensus 4 ~~l~~kyrP~~~~~iiGq~~~~~~l~~~~~~------~~~~-h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c 76 (363)
T PRK14961 4 QILARKWRPQYFRDIIGQKHIVTAISNGLSL------GRIH-HAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKC 76 (363)
T ss_pred HHHHHHhCCCchhhccChHHHHHHHHHHHHc------CCCC-eEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCC
Confidence 4689999999999999999999999888865 5554 7789999999999999999999997542111111100
Q ss_pred -hhhhhhhcc----c-cCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHHHHH
Q 009072 216 -IWQEYMHNC----K-TGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLV 289 (544)
Q Consensus 216 -~~~e~l~~~----~-~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~~~ 289 (544)
...+..... . .........+.++.+++.+...+ ..++.+|+||||++.++.. .+++|++.+
T Consensus 77 ~~c~~~~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p--------~~~~~kviIIDEa~~l~~~-----a~naLLk~l 143 (363)
T PRK14961 77 IICKEIEKGLCLDLIEIDAASRTKVEEMREILDNIYYSP--------SKSRFKVYLIDEVHMLSRH-----SFNALLKTL 143 (363)
T ss_pred HHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhcCc--------ccCCceEEEEEChhhcCHH-----HHHHHHHHH
Confidence 000000000 0 00001123456666666543211 1134679999999998642 235677777
Q ss_pred hcCCCcEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcC
Q 009072 290 RSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASG 369 (544)
Q Consensus 290 ~~~~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~l~~Ia~~s~ 369 (544)
+..+..+.+|++++.. . ..++++.+| |..++|.|++.+++.++|..++..+|+.+++++++.|+..++
T Consensus 144 Ee~~~~~~fIl~t~~~--------~--~l~~tI~SR--c~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~ 211 (363)
T PRK14961 144 EEPPQHIKFILATTDV--------E--KIPKTILSR--CLQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAH 211 (363)
T ss_pred hcCCCCeEEEEEcCCh--------H--hhhHHHHhh--ceEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 7765555444443211 0 112345554 899999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHhccC
Q 009072 370 GDIRQAITSLQFSSLK 385 (544)
Q Consensus 370 GDiR~aIn~Lq~~~~~ 385 (544)
||+|.|++.|+.++..
T Consensus 212 G~~R~al~~l~~~~~~ 227 (363)
T PRK14961 212 GSMRDALNLLEHAINL 227 (363)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999887643
No 24
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.91 E-value=1.6e-23 Score=227.77 Aligned_cols=213 Identities=19% Similarity=0.290 Sum_probs=155.1
Q ss_pred CCcccccCCCCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCCchh
Q 009072 137 QLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTI 216 (544)
Q Consensus 137 ~lW~eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~~~~ 216 (544)
..|.+||||++|+|++|++..++.|...+.. |+.+ +.+||+||+|+||||+|+++|+.+++.......+ +.
T Consensus 4 ~~La~KyRP~~f~divGQe~vv~~L~~~l~~------~rl~-hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~p--Cg 74 (647)
T PRK07994 4 QVLARKWRPQTFAEVVGQEHVLTALANALDL------GRLH-HAYLFSGTRGVGKTTIARLLAKGLNCETGITATP--CG 74 (647)
T ss_pred hhHHHHhCCCCHHHhcCcHHHHHHHHHHHHc------CCCC-eEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCC--CC
Confidence 4588999999999999999999999888876 5554 6789999999999999999999998752111111 11
Q ss_pred hhhhhhccccC-------c--ccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHHH
Q 009072 217 WQEYMHNCKTG-------L--EYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLL 287 (544)
Q Consensus 217 ~~e~l~~~~~g-------~--~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~ 287 (544)
....+..+..| + ......+.++++++.+.... ..++.+|+||||+|.++.. .+++|++
T Consensus 75 ~C~~C~~i~~g~~~D~ieidaas~~~VddiR~li~~~~~~p--------~~g~~KV~IIDEah~Ls~~-----a~NALLK 141 (647)
T PRK07994 75 ECDNCREIEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAP--------ARGRFKVYLIDEVHMLSRH-----SFNALLK 141 (647)
T ss_pred CCHHHHHHHcCCCCCceeecccccCCHHHHHHHHHHHHhhh--------hcCCCEEEEEechHhCCHH-----HHHHHHH
Confidence 00101000000 0 00123466777777654221 1245789999999998753 3467888
Q ss_pred HHhcCCCcEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 009072 288 LVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQA 367 (544)
Q Consensus 288 ~~~~~~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~l~~Ia~~ 367 (544)
.+++....++||.+++.. . ..+..+++| |..++|.+++.+++..+|.+++..+++.++++++..|+..
T Consensus 142 tLEEPp~~v~FIL~Tt~~--------~--kLl~TI~SR--C~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~ 209 (647)
T PRK07994 142 TLEEPPEHVKFLLATTDP--------Q--KLPVTILSR--CLQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARA 209 (647)
T ss_pred HHHcCCCCeEEEEecCCc--------c--ccchHHHhh--heEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 899876666555554321 1 112455665 9999999999999999999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHhc
Q 009072 368 SGGDIRQAITSLQFSS 383 (544)
Q Consensus 368 s~GDiR~aIn~Lq~~~ 383 (544)
++||+|.|++.|+.+.
T Consensus 210 s~Gs~R~Al~lldqai 225 (647)
T PRK07994 210 ADGSMRDALSLTDQAI 225 (647)
T ss_pred cCCCHHHHHHHHHHHH
Confidence 9999999999996544
No 25
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.91 E-value=2.4e-23 Score=223.30 Aligned_cols=214 Identities=15% Similarity=0.255 Sum_probs=155.0
Q ss_pred CCCcccccCCCCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCCch
Q 009072 136 QQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPT 215 (544)
Q Consensus 136 ~~lW~eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~~~ 215 (544)
...|++||||++|+|++||+..++.+..++.. |+.+ +.+||+||+|+||||+|+++|+.+.+.- |...+++
T Consensus 3 ~~~~~~KyRP~~F~dIIGQe~iv~~L~~aI~~------~rl~-hA~Lf~GP~GvGKTTlA~~lAk~L~C~~--~~~~~~C 73 (605)
T PRK05896 3 EITFYRKYRPHNFKQIIGQELIKKILVNAILN------NKLT-HAYIFSGPRGIGKTSIAKIFAKAINCLN--PKDGDCC 73 (605)
T ss_pred chhHHHHhCCCCHHHhcCcHHHHHHHHHHHHc------CCCC-ceEEEECCCCCCHHHHHHHHHHHhcCCC--CCCCCCC
Confidence 35899999999999999999999999988865 5554 7899999999999999999999986531 1111111
Q ss_pred hhhhhhh----cc------ccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHH
Q 009072 216 IWQEYMH----NC------KTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCL 285 (544)
Q Consensus 216 ~~~e~l~----~~------~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L 285 (544)
.....+. .. ..+. .....+.++.+++.+...+. ..+.+|++|||++.+... ..++|
T Consensus 74 g~C~sCr~i~~~~h~DiieIdaa-s~igVd~IReIi~~~~~~P~--------~~~~KVIIIDEad~Lt~~-----A~NaL 139 (605)
T PRK05896 74 NSCSVCESINTNQSVDIVELDAA-SNNGVDEIRNIIDNINYLPT--------TFKYKVYIIDEAHMLSTS-----AWNAL 139 (605)
T ss_pred cccHHHHHHHcCCCCceEEeccc-cccCHHHHHHHHHHHHhchh--------hCCcEEEEEechHhCCHH-----HHHHH
Confidence 0000000 00 0000 01233567777766543321 124679999999998643 34678
Q ss_pred HHHHhcCCCcEEEEEccCCCCCCCCccccchHH-HHHHHhhcCceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHH
Q 009072 286 LLLVRSTHIPTAVVLTECGKADSVDSTAQSFEE-LQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLV 364 (544)
Q Consensus 286 ~~~~~~~~~piIiI~t~~~~~~~~d~~~~~l~~-l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~l~~I 364 (544)
++.++..+..+++|+.++. ... +.++.+| |..+.|.+++..++..+|..++.++|+.++++++..|
T Consensus 140 LKtLEEPp~~tvfIL~Tt~-----------~~KLl~TI~SR--cq~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~L 206 (605)
T PRK05896 140 LKTLEEPPKHVVFIFATTE-----------FQKIPLTIISR--CQRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKI 206 (605)
T ss_pred HHHHHhCCCcEEEEEECCC-----------hHhhhHHHHhh--hhhcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 8888877655555544321 122 2455554 8999999999999999999999999999999999999
Q ss_pred HHHcCCcHHHHHHHHHHhccC
Q 009072 365 AQASGGDIRQAITSLQFSSLK 385 (544)
Q Consensus 365 a~~s~GDiR~aIn~Lq~~~~~ 385 (544)
+..++||+|.|++.|+.++..
T Consensus 207 a~lS~GdlR~AlnlLekL~~y 227 (605)
T PRK05896 207 ADLADGSLRDGLSILDQLSTF 227 (605)
T ss_pred HHHcCCcHHHHHHHHHHHHhh
Confidence 999999999999999987654
No 26
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.91 E-value=4.2e-23 Score=221.20 Aligned_cols=212 Identities=17% Similarity=0.237 Sum_probs=146.9
Q ss_pred CcccccCCCCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeE----EEEeCCC
Q 009072 138 LWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARL----YEWDTPT 213 (544)
Q Consensus 138 lW~eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~v----iei~~s~ 213 (544)
+| +||||++|+|++|++..++.|+.++.. ++.+ +.+||+||||+||||+|+++|+.+.+.- ..+.+..
T Consensus 4 l~-~KyRP~~~~dvvGq~~v~~~L~~~i~~------~~l~-ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~s 75 (504)
T PRK14963 4 LY-QRARPITFDEVVGQEHVKEVLLAALRQ------GRLG-HAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECES 75 (504)
T ss_pred HH-HhhCCCCHHHhcChHHHHHHHHHHHHc------CCCC-eEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChh
Confidence 45 999999999999999999999999876 4444 6779999999999999999999986420 0000000
Q ss_pred chhhhhh----hhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHHHHH
Q 009072 214 PTIWQEY----MHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLV 289 (544)
Q Consensus 214 ~~~~~e~----l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~~~ 289 (544)
.+..... +..... ......+.++++.+.+..... ..++.||||||+|.+.. ..++.|+..+
T Consensus 76 c~~i~~~~h~dv~el~~--~~~~~vd~iR~l~~~~~~~p~--------~~~~kVVIIDEad~ls~-----~a~naLLk~L 140 (504)
T PRK14963 76 CLAVRRGAHPDVLEIDA--ASNNSVEDVRDLREKVLLAPL--------RGGRKVYILDEAHMMSK-----SAFNALLKTL 140 (504)
T ss_pred hHHHhcCCCCceEEecc--cccCCHHHHHHHHHHHhhccc--------cCCCeEEEEECccccCH-----HHHHHHHHHH
Confidence 0000000 000000 011223556666555443221 13577999999998753 2345677777
Q ss_pred hcCCCcEEEEEccCCCCCCCCccccchHHH-HHHHhhcCceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHc
Q 009072 290 RSTHIPTAVVLTECGKADSVDSTAQSFEEL-QSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQAS 368 (544)
Q Consensus 290 ~~~~~piIiI~t~~~~~~~~d~~~~~l~~l-~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~l~~Ia~~s 368 (544)
+.....+++|+.+... ..+ ..+.+ +|..++|.+++.+++..+|.+++.++|+.+++++++.|++.+
T Consensus 141 Eep~~~t~~Il~t~~~-----------~kl~~~I~S--Rc~~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s 207 (504)
T PRK14963 141 EEPPEHVIFILATTEP-----------EKMPPTILS--RTQHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLA 207 (504)
T ss_pred HhCCCCEEEEEEcCCh-----------hhCChHHhc--ceEEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 7654444544433211 112 33444 489999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHhccC
Q 009072 369 GGDIRQAITSLQFSSLK 385 (544)
Q Consensus 369 ~GDiR~aIn~Lq~~~~~ 385 (544)
+||+|.++|.||.++..
T Consensus 208 ~GdlR~aln~Lekl~~~ 224 (504)
T PRK14963 208 DGAMRDAESLLERLLAL 224 (504)
T ss_pred CCCHHHHHHHHHHHHhc
Confidence 99999999999998764
No 27
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.91 E-value=3.8e-23 Score=220.67 Aligned_cols=199 Identities=21% Similarity=0.354 Sum_probs=150.9
Q ss_pred CCcccccCCCCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhCCe-----------
Q 009072 137 QLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGAR----------- 205 (544)
Q Consensus 137 ~lW~eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~----------- 205 (544)
+.|++||||++|+|++|++..++.|..++.. |+.+ +.+||+||+|+|||++|+++|+.+.+.
T Consensus 2 ~~l~~KyRP~~fdeiiGqe~v~~~L~~~I~~------grl~-hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C 74 (535)
T PRK08451 2 QALALKYRPKHFDELIGQESVSKTLSLALDN------NRLA-HAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTC 74 (535)
T ss_pred ccHHHHHCCCCHHHccCcHHHHHHHHHHHHc------CCCC-eeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCccc
Confidence 4689999999999999999999999999875 5555 788999999999999999999998532
Q ss_pred -------------EEEEeCCCchhhhhhhhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCC
Q 009072 206 -------------LYEWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVT 272 (544)
Q Consensus 206 -------------viei~~s~~~~~~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l 272 (544)
++++++.+ ....+.+++.++.+...+. .++.+|+||||++.+
T Consensus 75 ~~C~~~~~~~h~dv~eldaas-----------------~~gId~IRelie~~~~~P~--------~~~~KVvIIDEad~L 129 (535)
T PRK08451 75 IQCQSALENRHIDIIEMDAAS-----------------NRGIDDIRELIEQTKYKPS--------MARFKIFIIDEVHML 129 (535)
T ss_pred HHHHHHhhcCCCeEEEecccc-----------------ccCHHHHHHHHHHHhhCcc--------cCCeEEEEEECcccC
Confidence 22222111 0123667777765432111 135689999999998
Q ss_pred CchhHHHHHHHHHHHHHhcCCCcEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHHh
Q 009072 273 NGRTAFERLRQCLLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQE 352 (544)
Q Consensus 273 ~~~~~~~~~~~~L~~~~~~~~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e 352 (544)
+.. .+++|++.++..+..++||.+++. ....++++.+| |..++|.+++..++..+|.+++..+
T Consensus 130 t~~-----A~NALLK~LEEpp~~t~FIL~ttd----------~~kL~~tI~SR--c~~~~F~~Ls~~ei~~~L~~Il~~E 192 (535)
T PRK08451 130 TKE-----AFNALLKTLEEPPSYVKFILATTD----------PLKLPATILSR--TQHFRFKQIPQNSIISHLKTILEKE 192 (535)
T ss_pred CHH-----HHHHHHHHHhhcCCceEEEEEECC----------hhhCchHHHhh--ceeEEcCCCCHHHHHHHHHHHHHHc
Confidence 643 346778888876554544443321 11122455554 8999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHcCCcHHHHHHHHHHhcc
Q 009072 353 QYSLSTEQIDLVAQASGGDIRQAITSLQFSSL 384 (544)
Q Consensus 353 ~~~i~~~~l~~Ia~~s~GDiR~aIn~Lq~~~~ 384 (544)
|+.++++++..|+..++||+|.+++.|+.++.
T Consensus 193 Gi~i~~~Al~~Ia~~s~GdlR~alnlLdqai~ 224 (535)
T PRK08451 193 GVSYEPEALEILARSGNGSLRDTLTLLDQAII 224 (535)
T ss_pred CCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 99999999999999999999999999976554
No 28
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.91 E-value=9.3e-23 Score=208.90 Aligned_cols=202 Identities=21% Similarity=0.391 Sum_probs=143.5
Q ss_pred CCCCcccccCCCCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhC-----CeEEEE
Q 009072 135 TQQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLG-----ARLYEW 209 (544)
Q Consensus 135 ~~~lW~eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg-----~~viei 209 (544)
+..+|+|||+|++++|++|++..++.+..|++. +.. ++++|+||||+|||++++++++++. ..++++
T Consensus 3 ~~~~w~~kyrP~~~~~~~g~~~~~~~l~~~i~~------~~~--~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~ 74 (319)
T PRK00440 3 MEEIWVEKYRPRTLDEIVGQEEIVERLKSYVKE------KNM--PHLLFAGPPGTGKTTAALALARELYGEDWRENFLEL 74 (319)
T ss_pred ccCccchhhCCCcHHHhcCcHHHHHHHHHHHhC------CCC--CeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEe
Confidence 467899999999999999999999999999864 333 3689999999999999999999973 235555
Q ss_pred eCCCchhhhhhhhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHHHHH
Q 009072 210 DTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLV 289 (544)
Q Consensus 210 ~~s~~~~~~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~~~ 289 (544)
+.++.. +. ..+.+.+........ . ....+.+|+|||++.+.... ++.|..++
T Consensus 75 ~~~~~~-----------~~------~~~~~~i~~~~~~~~---~---~~~~~~vviiDe~~~l~~~~-----~~~L~~~l 126 (319)
T PRK00440 75 NASDER-----------GI------DVIRNKIKEFARTAP---V---GGAPFKIIFLDEADNLTSDA-----QQALRRTM 126 (319)
T ss_pred cccccc-----------ch------HHHHHHHHHHHhcCC---C---CCCCceEEEEeCcccCCHHH-----HHHHHHHH
Confidence 544321 11 112222222211111 1 11236799999999986532 23455555
Q ss_pred hcCCCc-EEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHc
Q 009072 290 RSTHIP-TAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQAS 368 (544)
Q Consensus 290 ~~~~~p-iIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~l~~Ia~~s 368 (544)
+..... .++++++.. . ..++++.+| +..+.|.+++.+++..+|..++.++++.+++++++.|+..+
T Consensus 127 e~~~~~~~lIl~~~~~---------~--~l~~~l~sr--~~~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~ 193 (319)
T PRK00440 127 EMYSQNTRFILSCNYS---------S--KIIDPIQSR--CAVFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVS 193 (319)
T ss_pred hcCCCCCeEEEEeCCc---------c--ccchhHHHH--hheeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 543322 233333211 0 112344444 77899999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHhccC
Q 009072 369 GGDIRQAITSLQFSSLK 385 (544)
Q Consensus 369 ~GDiR~aIn~Lq~~~~~ 385 (544)
+||+|.|++.||.++..
T Consensus 194 ~gd~r~~~~~l~~~~~~ 210 (319)
T PRK00440 194 EGDMRKAINALQAAAAT 210 (319)
T ss_pred CCCHHHHHHHHHHHHHc
Confidence 99999999999988764
No 29
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.91 E-value=4.1e-23 Score=222.67 Aligned_cols=215 Identities=16% Similarity=0.252 Sum_probs=149.2
Q ss_pred CCCcccccCCCCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCC-c
Q 009072 136 QQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPT-P 214 (544)
Q Consensus 136 ~~lW~eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~-~ 214 (544)
...|++||||++|+|++|++..++.|.+++.. ++.+ +.+||+|||||||||+|+++|+.+.+.--.-..+. .
T Consensus 3 ~~~la~KyRP~sf~dIiGQe~v~~~L~~ai~~------~ri~-ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~ 75 (624)
T PRK14959 3 HASLTARYRPQTFAEVAGQETVKAILSRAAQE------NRVA-PAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNT 75 (624)
T ss_pred cchHHHHhCCCCHHHhcCCHHHHHHHHHHHHc------CCCC-ceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcc
Confidence 45799999999999999999999999998875 5544 78999999999999999999999976411000000 0
Q ss_pred h-hhhhhhhcc------ccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHHH
Q 009072 215 T-IWQEYMHNC------KTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLL 287 (544)
Q Consensus 215 ~-~~~e~l~~~------~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~ 287 (544)
+ ......... ..+. .....+.++.+.+.+.... ...+.+||||||+|.+... .++.|++
T Consensus 76 C~sC~~i~~g~hpDv~eId~a-~~~~Id~iR~L~~~~~~~p--------~~g~~kVIIIDEad~Lt~~-----a~naLLk 141 (624)
T PRK14959 76 CEQCRKVTQGMHVDVVEIDGA-SNRGIDDAKRLKEAIGYAP--------MEGRYKVFIIDEAHMLTRE-----AFNALLK 141 (624)
T ss_pred cHHHHHHhcCCCCceEEEecc-cccCHHHHHHHHHHHHhhh--------hcCCceEEEEEChHhCCHH-----HHHHHHH
Confidence 0 000000000 0000 0112345555554443221 1135679999999998643 2466778
Q ss_pred HHhcCCCcEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 009072 288 LVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQA 367 (544)
Q Consensus 288 ~~~~~~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~l~~Ia~~ 367 (544)
.++.....+++|+.++.. ...+..+.+| |..|+|.+++.+++..+|..++..+++.+++++++.|++.
T Consensus 142 ~LEEP~~~~ifILaTt~~----------~kll~TI~SR--cq~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~ 209 (624)
T PRK14959 142 TLEEPPARVTFVLATTEP----------HKFPVTIVSR--CQHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARR 209 (624)
T ss_pred HhhccCCCEEEEEecCCh----------hhhhHHHHhh--hhccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 887754445554433211 1112344454 8999999999999999999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHhc
Q 009072 368 SGGDIRQAITSLQFSS 383 (544)
Q Consensus 368 s~GDiR~aIn~Lq~~~ 383 (544)
++||+|.|++.|+.++
T Consensus 210 s~GdlR~Al~lLeqll 225 (624)
T PRK14959 210 AAGSVRDSMSLLGQVL 225 (624)
T ss_pred cCCCHHHHHHHHHHHH
Confidence 9999999999997654
No 30
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.91 E-value=2.7e-23 Score=224.60 Aligned_cols=215 Identities=20% Similarity=0.287 Sum_probs=154.1
Q ss_pred CCcccccCCCCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCCchh
Q 009072 137 QLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTI 216 (544)
Q Consensus 137 ~lW~eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~~~~ 216 (544)
..|.+||+|++|+|++|++..++.|..++.. ++.+ +.+||+||||+||||+|+++|+.+++.-.....| +.
T Consensus 4 ~~l~~k~rP~~f~divGq~~v~~~L~~~i~~------~~~~-ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~p--cg 74 (527)
T PRK14969 4 QVLARKWRPKSFSELVGQEHVVRALTNALEQ------QRLH-HAYLFTGTRGVGKTTLARILAKSLNCETGVTATP--CG 74 (527)
T ss_pred HHHHHHhCCCcHHHhcCcHHHHHHHHHHHHc------CCCC-EEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCC--CC
Confidence 4589999999999999999999999999876 4544 7789999999999999999999998742111111 11
Q ss_pred hhhhhhccccC-------c--ccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHHH
Q 009072 217 WQEYMHNCKTG-------L--EYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLL 287 (544)
Q Consensus 217 ~~e~l~~~~~g-------~--~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~ 287 (544)
....+.....| + ......+.++++++.+.... ..++++|+||||+|.++.. ..++|++
T Consensus 75 ~C~~C~~i~~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p--------~~~~~kVvIIDEad~ls~~-----a~naLLK 141 (527)
T PRK14969 75 VCSACLEIDSGRFVDLIEVDAASNTQVDAMRELLDNAQYAP--------TRGRFKVYIIDEVHMLSKS-----AFNAMLK 141 (527)
T ss_pred CCHHHHHHhcCCCCceeEeeccccCCHHHHHHHHHHHhhCc--------ccCCceEEEEcCcccCCHH-----HHHHHHH
Confidence 10000000000 0 01123466777777654221 1245789999999998753 2467888
Q ss_pred HHhcCCCcEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 009072 288 LVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQA 367 (544)
Q Consensus 288 ~~~~~~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~l~~Ia~~ 367 (544)
.++..+..++||+.++.. .. .+..+++| |..++|.+++..++.++|.+++.++|+.++++++..|+..
T Consensus 142 ~LEepp~~~~fIL~t~d~--------~k--il~tI~SR--c~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~ 209 (527)
T PRK14969 142 TLEEPPEHVKFILATTDP--------QK--IPVTVLSR--CLQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARA 209 (527)
T ss_pred HHhCCCCCEEEEEEeCCh--------hh--CchhHHHH--HHHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 888865555555443221 11 12345554 9999999999999999999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHhccC
Q 009072 368 SGGDIRQAITSLQFSSLK 385 (544)
Q Consensus 368 s~GDiR~aIn~Lq~~~~~ 385 (544)
++||+|.|++.|+.++..
T Consensus 210 s~Gslr~al~lldqai~~ 227 (527)
T PRK14969 210 AAGSMRDALSLLDQAIAY 227 (527)
T ss_pred cCCCHHHHHHHHHHHHHh
Confidence 999999999999766543
No 31
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.91 E-value=9e-23 Score=210.69 Aligned_cols=217 Identities=24% Similarity=0.354 Sum_probs=148.4
Q ss_pred CCCcccccCCCCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhC-----CeEEEEe
Q 009072 136 QQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLG-----ARLYEWD 210 (544)
Q Consensus 136 ~~lW~eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg-----~~viei~ 210 (544)
..+|++||+|+++++++|++..++.|..++.. +.. ++++|+||||+|||++|+++|+++. ..+++++
T Consensus 2 ~~~w~~ky~P~~~~~~~g~~~~~~~L~~~~~~------~~~--~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~ 73 (337)
T PRK12402 2 APLWTEKYRPALLEDILGQDEVVERLSRAVDS------PNL--PHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFN 73 (337)
T ss_pred CCchHHhhCCCcHHHhcCCHHHHHHHHHHHhC------CCC--ceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEec
Confidence 46899999999999999999999999988864 333 4699999999999999999999984 3456777
Q ss_pred CCCchh-hhhhhhcccc-----C---cccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHH
Q 009072 211 TPTPTI-WQEYMHNCKT-----G---LEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERL 281 (544)
Q Consensus 211 ~s~~~~-~~e~l~~~~~-----g---~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~ 281 (544)
+++... ....+..... + ....+..+.++.++.....+... ...+.+|||||++.+... .
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~vlilDe~~~l~~~-----~ 141 (337)
T PRK12402 74 VADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPL-------SADYKTILLDNAEALRED-----A 141 (337)
T ss_pred hhhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCC-------CCCCcEEEEeCcccCCHH-----H
Confidence 654210 0000000000 0 00011234455554444333211 123569999999988642 2
Q ss_pred HHHHHHHHhcCCC-cEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHH
Q 009072 282 RQCLLLLVRSTHI-PTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQ 360 (544)
Q Consensus 282 ~~~L~~~~~~~~~-piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~ 360 (544)
++.|..+++.... ..++++++.. ...++++.+ ++..+.|.|++.+++..+|.+++.++++.+++++
T Consensus 142 ~~~L~~~le~~~~~~~~Il~~~~~-----------~~~~~~L~s--r~~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~a 208 (337)
T PRK12402 142 QQALRRIMEQYSRTCRFIIATRQP-----------SKLIPPIRS--RCLPLFFRAPTDDELVDVLESIAEAEGVDYDDDG 208 (337)
T ss_pred HHHHHHHHHhccCCCeEEEEeCCh-----------hhCchhhcC--CceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHH
Confidence 3345555554332 2344443311 011233334 4789999999999999999999999999999999
Q ss_pred HHHHHHHcCCcHHHHHHHHHHhccC
Q 009072 361 IDLVAQASGGDIRQAITSLQFSSLK 385 (544)
Q Consensus 361 l~~Ia~~s~GDiR~aIn~Lq~~~~~ 385 (544)
++.|+..++||+|.+++.|+.++..
T Consensus 209 l~~l~~~~~gdlr~l~~~l~~~~~~ 233 (337)
T PRK12402 209 LELIAYYAGGDLRKAILTLQTAALA 233 (337)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHc
Confidence 9999999999999999999998743
No 32
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.90 E-value=7.9e-23 Score=229.19 Aligned_cols=215 Identities=19% Similarity=0.290 Sum_probs=155.7
Q ss_pred CCcccccCCCCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCCchh
Q 009072 137 QLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTI 216 (544)
Q Consensus 137 ~lW~eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~~~~ 216 (544)
..|.+||||++|+||+|++..++.|+.++.. ++.+ +.+||+||+||||||+|++||+.+.+.- ......+.
T Consensus 3 ~~l~~KyRP~~f~eiiGqe~v~~~L~~~i~~------~ri~-Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~--~~~~~pCg 73 (824)
T PRK07764 3 LALYRRYRPATFAEVIGQEHVTEPLSTALDS------GRIN-HAYLFSGPRGCGKTSSARILARSLNCVE--GPTSTPCG 73 (824)
T ss_pred hhHHHHhCCCCHHHhcCcHHHHHHHHHHHHh------CCCC-ceEEEECCCCCCHHHHHHHHHHHhCccc--CCCCCCCc
Confidence 3477999999999999999999999999876 5554 7799999999999999999999998741 11111111
Q ss_pred hhhhhhccccC---------c--ccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHH
Q 009072 217 WQEYMHNCKTG---------L--EYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCL 285 (544)
Q Consensus 217 ~~e~l~~~~~g---------~--~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L 285 (544)
....+.....+ + ......+.++++.+.+. +.. ...+.+|+||||+|.|+.. .++.|
T Consensus 74 ~C~sC~~~~~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~-~~p-------~~~~~KV~IIDEad~lt~~-----a~NaL 140 (824)
T PRK07764 74 ECDSCVALAPGGPGSLDVTEIDAASHGGVDDARELRERAF-FAP-------AESRYKIFIIDEAHMVTPQ-----GFNAL 140 (824)
T ss_pred ccHHHHHHHcCCCCCCcEEEecccccCCHHHHHHHHHHHH-hch-------hcCCceEEEEechhhcCHH-----HHHHH
Confidence 00000000000 0 00123466666665543 211 1245789999999999753 34678
Q ss_pred HHHHhcCCCcEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Q 009072 286 LLLVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVA 365 (544)
Q Consensus 286 ~~~~~~~~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~l~~Ia 365 (544)
++++++....++||+.++.. + ..+..+.+| |.+|.|.+++..+|.++|.++|..+++.++++.+..|+
T Consensus 141 LK~LEEpP~~~~fIl~tt~~----~------kLl~TIrSR--c~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa 208 (824)
T PRK07764 141 LKIVEEPPEHLKFIFATTEP----D------KVIGTIRSR--THHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVI 208 (824)
T ss_pred HHHHhCCCCCeEEEEEeCCh----h------hhhHHHHhh--eeEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 89999877666666554221 0 123445454 99999999999999999999999999999999999999
Q ss_pred HHcCCcHHHHHHHHHHhccC
Q 009072 366 QASGGDIRQAITSLQFSSLK 385 (544)
Q Consensus 366 ~~s~GDiR~aIn~Lq~~~~~ 385 (544)
..++||+|.+++.|+-++..
T Consensus 209 ~~sgGdlR~Al~eLEKLia~ 228 (824)
T PRK07764 209 RAGGGSVRDSLSVLDQLLAG 228 (824)
T ss_pred HHcCCCHHHHHHHHHHHHhh
Confidence 99999999999999887743
No 33
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.90 E-value=1e-22 Score=221.55 Aligned_cols=214 Identities=18% Similarity=0.278 Sum_probs=154.9
Q ss_pred CCcccccCCCCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCCchh
Q 009072 137 QLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTI 216 (544)
Q Consensus 137 ~lW~eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~~~~ 216 (544)
..|.+||||++|+|++|++..++.|+.++.. ++.+ +.+||+||+|||||++|+.+|+.+.+.--. ...++.
T Consensus 4 ~al~~k~rP~~f~~viGq~~v~~~L~~~i~~------~~~~-hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~--~~~pC~ 74 (559)
T PRK05563 4 QALYRKWRPQTFEDVVGQEHITKTLKNAIKQ------GKIS-HAYLFSGPRGTGKTSAAKIFAKAVNCLNPP--DGEPCN 74 (559)
T ss_pred HHHHHHhCCCcHHhccCcHHHHHHHHHHHHc------CCCC-eEEEEECCCCCCHHHHHHHHHHHhcCCCCC--CCCCCC
Confidence 4577999999999999999999999999986 4544 789999999999999999999998653110 011111
Q ss_pred hhhhhhccccC--c-------ccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHHH
Q 009072 217 WQEYMHNCKTG--L-------EYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLL 287 (544)
Q Consensus 217 ~~e~l~~~~~g--~-------~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~ 287 (544)
....+.....+ . ......+.++++.+.+...+ ...+.+|+||||++.++.. ..++|++
T Consensus 75 ~C~~C~~i~~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p--------~~~~~kViIIDE~~~Lt~~-----a~naLLK 141 (559)
T PRK05563 75 ECEICKAITNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAP--------SEAKYKVYIIDEVHMLSTG-----AFNALLK 141 (559)
T ss_pred ccHHHHHHhcCCCCCeEEeeccccCCHHHHHHHHHHHhhCc--------ccCCeEEEEEECcccCCHH-----HHHHHHH
Confidence 10111100000 0 01123466777777764322 1245789999999998643 2456788
Q ss_pred HHhcCCCcEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 009072 288 LVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQA 367 (544)
Q Consensus 288 ~~~~~~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~l~~Ia~~ 367 (544)
.++..+..++||++++.. .. .+..+.+| |..+.|.+++..++..+|..++.++|+.++++++..|+..
T Consensus 142 tLEepp~~~ifIlatt~~--------~k--i~~tI~SR--c~~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~ 209 (559)
T PRK05563 142 TLEEPPAHVIFILATTEP--------HK--IPATILSR--CQRFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARA 209 (559)
T ss_pred HhcCCCCCeEEEEEeCCh--------hh--CcHHHHhH--heEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 888876666777654321 11 12345554 8999999999999999999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHhcc
Q 009072 368 SGGDIRQAITSLQFSSL 384 (544)
Q Consensus 368 s~GDiR~aIn~Lq~~~~ 384 (544)
++||+|.|++.|+.+..
T Consensus 210 s~G~~R~al~~Ldq~~~ 226 (559)
T PRK05563 210 AEGGMRDALSILDQAIS 226 (559)
T ss_pred cCCCHHHHHHHHHHHHH
Confidence 99999999999986654
No 34
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.90 E-value=1.4e-22 Score=221.43 Aligned_cols=215 Identities=19% Similarity=0.291 Sum_probs=157.3
Q ss_pred CCCcccccCCCCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCCch
Q 009072 136 QQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPT 215 (544)
Q Consensus 136 ~~lW~eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~~~ 215 (544)
-..|++||||++|+|++|++..++.|+.++.. |+.+ +.+||+||+|+|||++|+++|+.+.+.-.. ....++
T Consensus 5 y~~l~~KyRP~~f~dIiGQe~~v~~L~~aI~~------~rl~-HAYLF~GP~GtGKTt~AriLAk~LnC~~~~-~~~~pC 76 (725)
T PRK07133 5 YKALYRKYRPKTFDDIVGQDHIVQTLKNIIKS------NKIS-HAYLFSGPRGTGKTSVAKIFANALNCSHKT-DLLEPC 76 (725)
T ss_pred hhhHHHHhCCCCHHHhcCcHHHHHHHHHHHHc------CCCC-eEEEEECCCCCcHHHHHHHHHHHhcccccC-CCCCch
Confidence 46799999999999999999999999999976 5554 789999999999999999999998764210 000111
Q ss_pred hhhhhhhcc------ccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHHHHH
Q 009072 216 IWQEYMHNC------KTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLV 289 (544)
Q Consensus 216 ~~~e~l~~~------~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~~~ 289 (544)
.....+... ..+. .....+.++++++.+...+ ..++++|+||||++.+... .+++|++.+
T Consensus 77 ~~C~~~~~~~~Dvieidaa-sn~~vd~IReLie~~~~~P--------~~g~~KV~IIDEa~~LT~~-----A~NALLKtL 142 (725)
T PRK07133 77 QECIENVNNSLDIIEMDAA-SNNGVDEIRELIENVKNLP--------TQSKYKIYIIDEVHMLSKS-----AFNALLKTL 142 (725)
T ss_pred hHHHHhhcCCCcEEEEecc-ccCCHHHHHHHHHHHHhch--------hcCCCEEEEEEChhhCCHH-----HHHHHHHHh
Confidence 111000000 0000 0122456777777665332 1245789999999998653 346788888
Q ss_pred hcCCCcEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcC
Q 009072 290 RSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASG 369 (544)
Q Consensus 290 ~~~~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~l~~Ia~~s~ 369 (544)
+..+..+++|+.++.. . ..++++++| |..+.|.+++..++..+|..++.++|+.++++++..|+..++
T Consensus 143 EEPP~~tifILaTte~--------~--KLl~TI~SR--cq~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~ 210 (725)
T PRK07133 143 EEPPKHVIFILATTEV--------H--KIPLTILSR--VQRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSS 210 (725)
T ss_pred hcCCCceEEEEEcCCh--------h--hhhHHHHhh--ceeEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 8876666666554211 1 112445554 899999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHhcc
Q 009072 370 GDIRQAITSLQFSSL 384 (544)
Q Consensus 370 GDiR~aIn~Lq~~~~ 384 (544)
||+|.|++.|+.++.
T Consensus 211 GslR~AlslLekl~~ 225 (725)
T PRK07133 211 GSLRDALSIAEQVSI 225 (725)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999997654
No 35
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.90 E-value=9.5e-23 Score=222.85 Aligned_cols=215 Identities=20% Similarity=0.285 Sum_probs=153.1
Q ss_pred CCcccccCCCCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEE-EEeCCCch
Q 009072 137 QLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLY-EWDTPTPT 215 (544)
Q Consensus 137 ~lW~eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~vi-ei~~s~~~ 215 (544)
..|.+||||++|+|++|++..++.|..++.. |+.+ +.+||+||+|+||||+|+++|+.+++.-- .......+
T Consensus 4 ~~l~~k~RP~~f~~iiGq~~v~~~L~~~i~~------~~~~-hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c 76 (576)
T PRK14965 4 LVLARKYRPQTFSDLTGQEHVSRTLQNAIDT------GRVA-HAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVC 76 (576)
T ss_pred HHHHHHhCCCCHHHccCcHHHHHHHHHHHHc------CCCC-eEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCcc
Confidence 3578999999999999999999999999876 5554 78899999999999999999999875410 00000000
Q ss_pred -hhhhhhhcc------ccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHHHH
Q 009072 216 -IWQEYMHNC------KTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLL 288 (544)
Q Consensus 216 -~~~e~l~~~------~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~~ 288 (544)
...+..... ..+. .....+.++++++.+...+ ...+.+|+||||+|.++.. ..++|+++
T Consensus 77 ~~c~~i~~g~~~d~~eid~~-s~~~v~~ir~l~~~~~~~p--------~~~~~KVvIIdev~~Lt~~-----a~naLLk~ 142 (576)
T PRK14965 77 PPCVEITEGRSVDVFEIDGA-SNTGVDDIRELRENVKYLP--------SRSRYKIFIIDEVHMLSTN-----AFNALLKT 142 (576)
T ss_pred HHHHHHhcCCCCCeeeeecc-CccCHHHHHHHHHHHHhcc--------ccCCceEEEEEChhhCCHH-----HHHHHHHH
Confidence 000000000 0000 0122356777777664222 1245789999999998753 24678888
Q ss_pred HhcCCCcEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHc
Q 009072 289 VRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQAS 368 (544)
Q Consensus 289 ~~~~~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~l~~Ia~~s 368 (544)
++.....++||+.++.. -..+.++++| |..+.|.+++..++..+|..++.++|+.++++++..|+..+
T Consensus 143 LEepp~~~~fIl~t~~~----------~kl~~tI~SR--c~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a 210 (576)
T PRK14965 143 LEEPPPHVKFIFATTEP----------HKVPITILSR--CQRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKG 210 (576)
T ss_pred HHcCCCCeEEEEEeCCh----------hhhhHHHHHh--hhhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHc
Confidence 88866555555443211 1122455554 89999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHhcc
Q 009072 369 GGDIRQAITSLQFSSL 384 (544)
Q Consensus 369 ~GDiR~aIn~Lq~~~~ 384 (544)
+||+|.|++.|+.+..
T Consensus 211 ~G~lr~al~~Ldqlia 226 (576)
T PRK14965 211 DGSMRDSLSTLDQVLA 226 (576)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999976543
No 36
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.90 E-value=2.1e-22 Score=215.18 Aligned_cols=214 Identities=22% Similarity=0.311 Sum_probs=150.7
Q ss_pred CCcccccCCCCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCCchh
Q 009072 137 QLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTI 216 (544)
Q Consensus 137 ~lW~eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~~~~ 216 (544)
..|.+||||++|+|++|++..++.|+.++.. ++.+ +.+||+||+|+||||+|+.+|+.+++.-- ...+++.
T Consensus 4 ~~~~~kyRP~~f~diiGq~~i~~~L~~~i~~------~~i~-hayLf~Gp~G~GKTtlAr~lAk~L~c~~~--~~~~pc~ 74 (486)
T PRK14953 4 IPFARKYRPKFFKEVIGQEIVVRILKNAVKL------QRVS-HAYIFAGPRGTGKTTIARILAKVLNCLNP--QEGEPCG 74 (486)
T ss_pred hHHHHhhCCCcHHHccChHHHHHHHHHHHHc------CCCC-eEEEEECCCCCCHHHHHHHHHHHhcCcCC--CCCCCCC
Confidence 4799999999999999999999999999976 5554 77899999999999999999999875310 0001111
Q ss_pred hhhhhhccccC----c-----ccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHHH
Q 009072 217 WQEYMHNCKTG----L-----EYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLL 287 (544)
Q Consensus 217 ~~e~l~~~~~g----~-----~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~ 287 (544)
....+.....| + ......+.++.+.+.+...+ ..++++|+||||++.++.. ..++|+.
T Consensus 75 ~c~nc~~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P--------~~~~~KVvIIDEad~Lt~~-----a~naLLk 141 (486)
T PRK14953 75 KCENCVEIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTP--------IKGKYKVYIIDEAHMLTKE-----AFNALLK 141 (486)
T ss_pred ccHHHHHHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCc--------ccCCeeEEEEEChhhcCHH-----HHHHHHH
Confidence 00000000000 0 01122355666665554222 1245789999999988643 2356777
Q ss_pred HHhcCCCcEEEEEccCCCCCCCCccccchHHH-HHHHhhcCceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 009072 288 LVRSTHIPTAVVLTECGKADSVDSTAQSFEEL-QSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQ 366 (544)
Q Consensus 288 ~~~~~~~piIiI~t~~~~~~~~d~~~~~l~~l-~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~l~~Ia~ 366 (544)
+++..+...++|.+++. ...+ .++.+| |..+.|.|++..++..+|..++..+|+.+++++++.|++
T Consensus 142 ~LEepp~~~v~Il~tt~-----------~~kl~~tI~SR--c~~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~ 208 (486)
T PRK14953 142 TLEEPPPRTIFILCTTE-----------YDKIPPTILSR--CQRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQ 208 (486)
T ss_pred HHhcCCCCeEEEEEECC-----------HHHHHHHHHHh--ceEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 77776544444443311 1122 344454 889999999999999999999999999999999999999
Q ss_pred HcCCcHHHHHHHHHHhccC
Q 009072 367 ASGGDIRQAITSLQFSSLK 385 (544)
Q Consensus 367 ~s~GDiR~aIn~Lq~~~~~ 385 (544)
.++||+|.|++.|+.++..
T Consensus 209 ~s~G~lr~al~~Ldkl~~~ 227 (486)
T PRK14953 209 ASEGGMRDAASLLDQASTY 227 (486)
T ss_pred HcCCCHHHHHHHHHHHHHh
Confidence 9999999999999887643
No 37
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.90 E-value=2.3e-22 Score=218.94 Aligned_cols=218 Identities=21% Similarity=0.319 Sum_probs=158.3
Q ss_pred CCCcccccCCCCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEe-CC--
Q 009072 136 QQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWD-TP-- 212 (544)
Q Consensus 136 ~~lW~eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~-~s-- 212 (544)
-..|.+||||++|+||+|++..++.|..++.. |+.+ +.+||+||+|+||||+|+++|+.+++.....+ .+
T Consensus 11 y~~la~KyRP~~f~dliGq~~~v~~L~~~~~~------gri~-ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~ 83 (598)
T PRK09111 11 YRVLARKYRPQTFDDLIGQEAMVRTLTNAFET------GRIA-QAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTI 83 (598)
T ss_pred chhHHhhhCCCCHHHhcCcHHHHHHHHHHHHc------CCCC-ceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCcc
Confidence 46799999999999999999999999999876 6665 78999999999999999999999987643222 11
Q ss_pred CchhhhhhhhccccCc---------ccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHH
Q 009072 213 TPTIWQEYMHNCKTGL---------EYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQ 283 (544)
Q Consensus 213 ~~~~~~e~l~~~~~g~---------~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~ 283 (544)
+++.....+..+..+. ......+.++++++.+..... ..+++|+||||++.++.. ..+
T Consensus 84 ~~cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~--------~a~~KVvIIDEad~Ls~~-----a~n 150 (598)
T PRK09111 84 DLCGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPV--------SARYKVYIIDEVHMLSTA-----AFN 150 (598)
T ss_pred ccCcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchh--------cCCcEEEEEEChHhCCHH-----HHH
Confidence 1222222221111110 011234677888876643321 135789999999998753 235
Q ss_pred HHHHHHhcCCCcEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHH
Q 009072 284 CLLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDL 363 (544)
Q Consensus 284 ~L~~~~~~~~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~l~~ 363 (544)
.|+++++.....++||..++.. . ..+..+.+| |..+.|.+++..++..+|.+++.++++.+++++++.
T Consensus 151 aLLKtLEePp~~~~fIl~tte~--------~--kll~tI~SR--cq~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~l 218 (598)
T PRK09111 151 ALLKTLEEPPPHVKFIFATTEI--------R--KVPVTVLSR--CQRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALAL 218 (598)
T ss_pred HHHHHHHhCCCCeEEEEEeCCh--------h--hhhHHHHhh--eeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 6777787765445444433110 1 123445554 899999999999999999999999999999999999
Q ss_pred HHHHcCCcHHHHHHHHHHhccC
Q 009072 364 VAQASGGDIRQAITSLQFSSLK 385 (544)
Q Consensus 364 Ia~~s~GDiR~aIn~Lq~~~~~ 385 (544)
|+..++||+|.+++.|+.++..
T Consensus 219 Ia~~a~Gdlr~al~~Ldkli~~ 240 (598)
T PRK09111 219 IARAAEGSVRDGLSLLDQAIAH 240 (598)
T ss_pred HHHHcCCCHHHHHHHHHHHHhh
Confidence 9999999999999999766543
No 38
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=99.89 E-value=7.4e-23 Score=227.89 Aligned_cols=296 Identities=19% Similarity=0.276 Sum_probs=204.0
Q ss_pred CCCcccccCCCCcchhccChHHHHHHHHHHHHhhcCCC-----CC--CCcc-EEEEEcCCCCcHHHHHHHHHHHhCCeEE
Q 009072 136 QQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSK-----DK--FSTN-VLVITGQAGVGKTATVRQIASHLGARLY 207 (544)
Q Consensus 136 ~~lW~eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~-----g~--~~~~-~lLL~GPpG~GKTtla~~lA~elg~~vi 207 (544)
...|+++|+|+...+++++......+..|+..|..... +. .... .++++||||+|||++++++|+++|+.++
T Consensus 307 ~~~~~~k~~p~~~k~~~~~~~~~~~~~~~l~~~k~~~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~g~~v~ 386 (871)
T KOG1968|consen 307 GAGWTEKYQPTSSKALEGNASSSKKASKWLAKSKDKEKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKELGFKVV 386 (871)
T ss_pred ccccccccccccHHhhhcccchhhhhhhHHHhhhccccccccccCcchhhHHHHHhcCCCCCCchhhHhhhhhhccccee
Confidence 58999999999999999999999999999999833211 00 0112 5899999999999999999999999999
Q ss_pred EEeCCCchhhhhhhhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHHH
Q 009072 208 EWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLL 287 (544)
Q Consensus 208 ei~~s~~~~~~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~ 287 (544)
|.|+++.|.-.+.......-... ..+..... .+. .....+....|||+||+|.+++ .+ ++.+..|..
T Consensus 387 E~Nas~~RSk~~l~~~~~~~~~s----~si~~~~~---~~~----~~~~~~~~~~vil~devD~~~~-~d-Rg~v~~l~~ 453 (871)
T KOG1968|consen 387 EKNASDVRSKKELLNKLGNATSS----HSIKGSKK---KKG----NRQSLNSDHFLILMDEVDGMFG-ED-RGGVSKLSS 453 (871)
T ss_pred ecCccccccccHHHhhhhccccc----cchhhhhc---ccc----cccccccceeEEEEeccccccc-hh-hhhHHHHHH
Confidence 99999877433322211110000 11111110 000 0011123345999999999988 33 456667888
Q ss_pred HHhcCCCcEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 009072 288 LVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQA 367 (544)
Q Consensus 288 ~~~~~~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~l~~Ia~~ 367 (544)
++.....|+||+|++.... +.+++.+ -|..|+|..|....+..+|..+|..+++.+++..++.+.+.
T Consensus 454 l~~ks~~Piv~~cndr~~p-----------~sr~~~~--~~~~l~f~kP~~~~i~~ri~si~~se~~ki~~~~l~~~s~~ 520 (871)
T KOG1968|consen 454 LCKKSSRPLVCTCNDRNLP-----------KSRALSR--ACSDLRFSKPSSELIRSRIMSICKSEGIKISDDVLEEISKL 520 (871)
T ss_pred HHHhccCCeEEEecCCCCc-----------cccchhh--hcceeeecCCcHHHHHhhhhhhhcccceecCcHHHHHHHHh
Confidence 8899999999999985432 2233222 27899999999999999999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHhccCCCCCccccccCCCCCCCCccCCCCCCccccccccccchhhHhhhhhhccccCCCccccCCcc
Q 009072 368 SGGDIRQAITSLQFSSLKQDPMLNLSLSISKPNFPEEKADGHGGFSIQFGRDETLSLFHALGKFLHNKRETDNLVKMDQD 447 (544)
Q Consensus 368 s~GDiR~aIn~Lq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rD~~l~lF~algkil~~Kr~~~~~~~~~~~ 447 (544)
++||||++|++||||+......... . .........+|..+..|++..++|...|........
T Consensus 521 ~~~DiR~~i~~lq~~~~~~~~~~~~-----~----------~~~~~~~~~~~~~~~~~d~~~~~L~~~~~~s~~~~~--- 582 (871)
T KOG1968|consen 521 SGGDIRQIIMQLQFWSLSKPAELPK-----K----------KGTPIKTSKKNITVKDFDAAEGLLDISRVASEETSN--- 582 (871)
T ss_pred cccCHHHHHHHHhhhhccchhhhcc-----c----------cCccccccccccccchhHHHhhhccHhhhhhhhhhc---
Confidence 9999999999999998653321110 0 000001122678888899999999954442211100
Q ss_pred ccccccccccCCCCCCChHHHHHhcCCChHHHHHHHHhcCCCCCccc
Q 009072 448 AFVVKDKFSRLPLKMDAPEKVLSQAHGQARPVLDFLHENCWLDIMRQ 494 (544)
Q Consensus 448 ~~~~~~~~~r~pl~~~~pe~v~~~~~~~~~~~~~~LheNy~~~f~~~ 494 (544)
. .-.+++..++.....++.+|| +....+
T Consensus 583 ---------------~---~k~~~~~ed~~~~p~~v~~n~-~~~~~~ 610 (871)
T KOG1968|consen 583 ---------------Q---SKAELYFEDYSISPLKVQENY-LQVLPR 610 (871)
T ss_pred ---------------c---chHHHhccccccchhhcchhh-hcccch
Confidence 0 111233345566788999999 666555
No 39
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.89 E-value=8e-22 Score=205.17 Aligned_cols=215 Identities=20% Similarity=0.304 Sum_probs=150.8
Q ss_pred CCcccccCCCCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCCc-h
Q 009072 137 QLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTP-T 215 (544)
Q Consensus 137 ~lW~eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~~-~ 215 (544)
+.|++||+|+++++++|+++.++.+..++.. |..+ +.+||+||||+|||++|+.+|+.+...-..-..+.. +
T Consensus 2 ~~~~~~~rp~~~~~iig~~~~~~~l~~~~~~------~~~~-~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c 74 (355)
T TIGR02397 2 QVLARKYRPQTFEDVIGQEHIVQTLKNAIKN------GRIA-HAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNEC 74 (355)
T ss_pred ccHHHHhCCCcHhhccCcHHHHHHHHHHHHc------CCCC-eEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCC
Confidence 5799999999999999999999999999975 5554 789999999999999999999998654100000000 0
Q ss_pred -hhhhhhhccc------cCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHHHH
Q 009072 216 -IWQEYMHNCK------TGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLL 288 (544)
Q Consensus 216 -~~~e~l~~~~------~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~~ 288 (544)
.......... .+.. ....+.++++++.+...+. .+.++|++|||+|.+... ..+.|++.
T Consensus 75 ~~c~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~p~--------~~~~~vviidea~~l~~~-----~~~~Ll~~ 140 (355)
T TIGR02397 75 ESCKEINSGSSLDVIEIDAAS-NNGVDDIREILDNVKYAPS--------SGKYKVYIIDEVHMLSKS-----AFNALLKT 140 (355)
T ss_pred HHHHHHhcCCCCCEEEeeccc-cCCHHHHHHHHHHHhcCcc--------cCCceEEEEeChhhcCHH-----HHHHHHHH
Confidence 0000000000 0000 1123456677776543221 134679999999988642 23557777
Q ss_pred HhcCCCcEEEEEccCCCCCCCCccccchHH-HHHHHhhcCceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 009072 289 VRSTHIPTAVVLTECGKADSVDSTAQSFEE-LQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQA 367 (544)
Q Consensus 289 ~~~~~~piIiI~t~~~~~~~~d~~~~~l~~-l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~l~~Ia~~ 367 (544)
++..+..+++|+++.. ... ++.+.+| |..+.|.+++..++..+|..++..+|+.+++++++.|++.
T Consensus 141 le~~~~~~~lIl~~~~-----------~~~l~~~l~sr--~~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~ 207 (355)
T TIGR02397 141 LEEPPEHVVFILATTE-----------PHKIPATILSR--CQRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARA 207 (355)
T ss_pred HhCCccceeEEEEeCC-----------HHHHHHHHHhh--eeEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 7765555555544311 122 2344444 8899999999999999999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHhccC
Q 009072 368 SGGDIRQAITSLQFSSLK 385 (544)
Q Consensus 368 s~GDiR~aIn~Lq~~~~~ 385 (544)
++||+|.+++.|+.++..
T Consensus 208 ~~g~~~~a~~~lekl~~~ 225 (355)
T TIGR02397 208 ADGSLRDALSLLDQLISF 225 (355)
T ss_pred cCCChHHHHHHHHHHHhh
Confidence 999999999999887653
No 40
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.89 E-value=1.3e-21 Score=200.38 Aligned_cols=204 Identities=15% Similarity=0.248 Sum_probs=143.3
Q ss_pred CCCCCCcccccCCCCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCC
Q 009072 133 SSTQQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTP 212 (544)
Q Consensus 133 ~~~~~lW~eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s 212 (544)
-++..+|++||||++++|+++++..++.+..|++. |..+ +.+||+||||+|||++|+++|++++.++++++++
T Consensus 5 ~~~~~~w~~kyrP~~~~~~~~~~~~~~~l~~~~~~------~~~~-~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~ 77 (316)
T PHA02544 5 NPNEFMWEQKYRPSTIDECILPAADKETFKSIVKK------GRIP-NMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGS 77 (316)
T ss_pred CCCCCcceeccCCCcHHHhcCcHHHHHHHHHHHhc------CCCC-eEEEeeCcCCCCHHHHHHHHHHHhCccceEeccC
Confidence 34678999999999999999999999999999874 5554 6788899999999999999999999999988875
Q ss_pred CchhhhhhhhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHHHHHhcC
Q 009072 213 TPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRST 292 (544)
Q Consensus 213 ~~~~~~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~~~~~~ 292 (544)
+.+ .+.++..+......... ...+.||||||+|.+...+ ..+.|..+++..
T Consensus 78 ~~~------------------~~~i~~~l~~~~~~~~~-------~~~~~vliiDe~d~l~~~~----~~~~L~~~le~~ 128 (316)
T PHA02544 78 DCR------------------IDFVRNRLTRFASTVSL-------TGGGKVIIIDEFDRLGLAD----AQRHLRSFMEAY 128 (316)
T ss_pred ccc------------------HHHHHHHHHHHHHhhcc-------cCCCeEEEEECcccccCHH----HHHHHHHHHHhc
Confidence 411 11122212111111100 0236799999999884432 223455555553
Q ss_pred CCcEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHH-------HHHHHHHhCCCCCHHHHHHHH
Q 009072 293 HIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRT-------LSKICRQEQYSLSTEQIDLVA 365 (544)
Q Consensus 293 ~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~-------L~~i~~~e~~~i~~~~l~~Ia 365 (544)
.....+|++... ....++++.+| |..+.|++|+.++...+ +..++..+++.++++++..++
T Consensus 129 ~~~~~~Ilt~n~----------~~~l~~~l~sR--~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~i~~~al~~l~ 196 (316)
T PHA02544 129 SKNCSFIITANN----------KNGIIEPLRSR--CRVIDFGVPTKEEQIEMMKQMIVRCKGILEAEGVEVDMKVLAALV 196 (316)
T ss_pred CCCceEEEEcCC----------hhhchHHHHhh--ceEEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 333333333211 01112444454 78999999998876644 344566789999999999999
Q ss_pred HHcCCcHHHHHHHHHHhcc
Q 009072 366 QASGGDIRQAITSLQFSSL 384 (544)
Q Consensus 366 ~~s~GDiR~aIn~Lq~~~~ 384 (544)
+.+.||+|.+++.|+.++.
T Consensus 197 ~~~~~d~r~~l~~l~~~~~ 215 (316)
T PHA02544 197 KKNFPDFRRTINELQRYAS 215 (316)
T ss_pred HhcCCCHHHHHHHHHHHHc
Confidence 9999999999999998764
No 41
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.89 E-value=6.9e-22 Score=216.61 Aligned_cols=214 Identities=18% Similarity=0.254 Sum_probs=154.3
Q ss_pred CCcccccCCCCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCCchh
Q 009072 137 QLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTI 216 (544)
Q Consensus 137 ~lW~eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~~~~ 216 (544)
..|.+||||.+|+|++|++..++.|..++.. |+.+ +.+|||||+|+||||+|+++|+.+.+.-... ....+.
T Consensus 5 ~~~~~kyRP~~f~~viGq~~~~~~L~~~i~~------~~l~-hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~-~~~~Cg 76 (614)
T PRK14971 5 IVSARKYRPSTFESVVGQEALTTTLKNAIAT------NKLA-HAYLFCGPRGVGKTTCARIFAKTINCQNLTA-DGEACN 76 (614)
T ss_pred HHHHHHHCCCCHHHhcCcHHHHHHHHHHHHc------CCCC-eeEEEECCCCCCHHHHHHHHHHHhCCCCCCC-CCCCCC
Confidence 3589999999999999999999999999876 5655 7899999999999999999999987542100 000000
Q ss_pred hhhhhhcc----------ccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHH
Q 009072 217 WQEYMHNC----------KTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLL 286 (544)
Q Consensus 217 ~~e~l~~~----------~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~ 286 (544)
....+... ..+. .....+.++++++.+...+. .+..+|+||||++.++.. .+++|+
T Consensus 77 ~C~sC~~~~~~~~~n~~~ld~~-~~~~vd~Ir~li~~~~~~P~--------~~~~KVvIIdea~~Ls~~-----a~naLL 142 (614)
T PRK14971 77 ECESCVAFNEQRSYNIHELDAA-SNNSVDDIRNLIEQVRIPPQ--------IGKYKIYIIDEVHMLSQA-----AFNAFL 142 (614)
T ss_pred cchHHHHHhcCCCCceEEeccc-ccCCHHHHHHHHHHHhhCcc--------cCCcEEEEEECcccCCHH-----HHHHHH
Confidence 00000000 0010 01224667777776643321 134679999999998653 346788
Q ss_pred HHHhcCCCcEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 009072 287 LLVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQ 366 (544)
Q Consensus 287 ~~~~~~~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~l~~Ia~ 366 (544)
++++..+...+||++++. ....++.+.+| |..+.|.+++..++..+|.+++.++|+.+++++++.|++
T Consensus 143 K~LEepp~~tifIL~tt~----------~~kIl~tI~SR--c~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~ 210 (614)
T PRK14971 143 KTLEEPPSYAIFILATTE----------KHKILPTILSR--CQIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQ 210 (614)
T ss_pred HHHhCCCCCeEEEEEeCC----------chhchHHHHhh--hheeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 888886555555554321 11223455554 999999999999999999999999999999999999999
Q ss_pred HcCCcHHHHHHHHHHhcc
Q 009072 367 ASGGDIRQAITSLQFSSL 384 (544)
Q Consensus 367 ~s~GDiR~aIn~Lq~~~~ 384 (544)
.++||+|.|++.|+.++.
T Consensus 211 ~s~gdlr~al~~Lekl~~ 228 (614)
T PRK14971 211 KADGGMRDALSIFDQVVS 228 (614)
T ss_pred HcCCCHHHHHHHHHHHHH
Confidence 999999999999987643
No 42
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.88 E-value=7.4e-22 Score=209.77 Aligned_cols=216 Identities=19% Similarity=0.239 Sum_probs=150.6
Q ss_pred CCCcccccCCCCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeC-CCc
Q 009072 136 QQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDT-PTP 214 (544)
Q Consensus 136 ~~lW~eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~-s~~ 214 (544)
-..|.+||||++|+|++|++..++.|..++.. |+.+ +.+||+||||+|||++|+++|+.+.+.--.-+. +..
T Consensus 4 ~~~~~~kyRP~~~~diiGq~~~v~~L~~~i~~------~~i~-ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~ 76 (451)
T PRK06305 4 YQVSSRKYRPQTFSEILGQDAVVAVLKNALRF------NRAA-HAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCN 76 (451)
T ss_pred hHHHHHHhCCCCHHHhcCcHHHHHHHHHHHHc------CCCc-eEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCc
Confidence 45789999999999999999999999998875 5554 789999999999999999999998654110000 000
Q ss_pred -hhhhhhhh-cc------ccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHH
Q 009072 215 -TIWQEYMH-NC------KTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLL 286 (544)
Q Consensus 215 -~~~~e~l~-~~------~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~ 286 (544)
+.....+. .. ..|.. ....+.++.+.+.+.... ....++||||||+|.+... ..+.|+
T Consensus 77 ~c~~C~~i~~~~~~d~~~i~g~~-~~gid~ir~i~~~l~~~~--------~~~~~kvvIIdead~lt~~-----~~n~LL 142 (451)
T PRK06305 77 QCASCKEISSGTSLDVLEIDGAS-HRGIEDIRQINETVLFTP--------SKSRYKIYIIDEVHMLTKE-----AFNSLL 142 (451)
T ss_pred ccHHHHHHhcCCCCceEEeeccc-cCCHHHHHHHHHHHHhhh--------hcCCCEEEEEecHHhhCHH-----HHHHHH
Confidence 00000000 00 00100 011245555555443221 1135789999999998643 346788
Q ss_pred HHHhcCCCcEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 009072 287 LLVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQ 366 (544)
Q Consensus 287 ~~~~~~~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~l~~Ia~ 366 (544)
++++.....+++|+++.. ....++++.+| |..+.|++++..++.++|..++.++|+.+++++++.|+.
T Consensus 143 k~lEep~~~~~~Il~t~~----------~~kl~~tI~sR--c~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~ 210 (451)
T PRK06305 143 KTLEEPPQHVKFFLATTE----------IHKIPGTILSR--CQKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIAR 210 (451)
T ss_pred HHhhcCCCCceEEEEeCC----------hHhcchHHHHh--ceEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 888886555555443321 11122444444 899999999999999999999999999999999999999
Q ss_pred HcCCcHHHHHHHHHHhcc
Q 009072 367 ASGGDIRQAITSLQFSSL 384 (544)
Q Consensus 367 ~s~GDiR~aIn~Lq~~~~ 384 (544)
.++||+|.|++.|+.++.
T Consensus 211 ~s~gdlr~a~~~Lekl~~ 228 (451)
T PRK06305 211 AAQGSLRDAESLYDYVVG 228 (451)
T ss_pred HcCCCHHHHHHHHHHHHH
Confidence 999999999999998764
No 43
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.88 E-value=7.9e-22 Score=207.39 Aligned_cols=215 Identities=17% Similarity=0.274 Sum_probs=150.6
Q ss_pred CcccccCCCCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEE------eC
Q 009072 138 LWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEW------DT 211 (544)
Q Consensus 138 lW~eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei------~~ 211 (544)
.+.+||||++|+|++||+..++.|+.++.. |+.+ +.+||+||||+||||+|+++|+.+.+.-..- +.
T Consensus 5 ~l~~k~RP~~~~eiiGq~~~~~~L~~~~~~------~~~~-ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~ 77 (397)
T PRK14955 5 VIARKYRPKKFADITAQEHITRTIQNSLRM------GRVG-HGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEV 77 (397)
T ss_pred HHHHhcCCCcHhhccChHHHHHHHHHHHHh------CCcc-eeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccC
Confidence 357899999999999999999999999876 6655 7799999999999999999999998741100 00
Q ss_pred CCchhhhhhhhccccC--cc-------cccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHH
Q 009072 212 PTPTIWQEYMHNCKTG--LE-------YTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLR 282 (544)
Q Consensus 212 s~~~~~~e~l~~~~~g--~~-------~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~ 282 (544)
..++.....+.....| .. .....+.++++.+.+...+. ....+|+||||++.+... .+
T Consensus 78 ~~~c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~--------~~~~kvvIIdea~~l~~~-----~~ 144 (397)
T PRK14955 78 TEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQ--------KGRYRVYIIDEVHMLSIA-----AF 144 (397)
T ss_pred CCCCCCCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchh--------cCCeEEEEEeChhhCCHH-----HH
Confidence 0111000000000000 00 11224667777666642221 134679999999998753 23
Q ss_pred HHHHHHHhcCCCcEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHH
Q 009072 283 QCLLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQID 362 (544)
Q Consensus 283 ~~L~~~~~~~~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~l~ 362 (544)
+.|+++++......++|+.+.. ....++++.+| |..++|.+++.+++.+++..++..+++.+++++++
T Consensus 145 ~~LLk~LEep~~~t~~Il~t~~----------~~kl~~tl~sR--~~~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~ 212 (397)
T PRK14955 145 NAFLKTLEEPPPHAIFIFATTE----------LHKIPATIASR--CQRFNFKRIPLEEIQQQLQGICEAEGISVDADALQ 212 (397)
T ss_pred HHHHHHHhcCCCCeEEEEEeCC----------hHHhHHHHHHH--HHHhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 5677777776544554443311 11222344444 88999999999999999999999999999999999
Q ss_pred HHHHHcCCcHHHHHHHHHHhcc
Q 009072 363 LVAQASGGDIRQAITSLQFSSL 384 (544)
Q Consensus 363 ~Ia~~s~GDiR~aIn~Lq~~~~ 384 (544)
.|++.++||+|.+++.|+.++.
T Consensus 213 ~l~~~s~g~lr~a~~~L~kl~~ 234 (397)
T PRK14955 213 LIGRKAQGSMRDAQSILDQVIA 234 (397)
T ss_pred HHHHHcCCCHHHHHHHHHHHHH
Confidence 9999999999999999997643
No 44
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.88 E-value=1.8e-21 Score=213.27 Aligned_cols=218 Identities=22% Similarity=0.293 Sum_probs=157.7
Q ss_pred CCCcccccCCCCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCCch
Q 009072 136 QQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPT 215 (544)
Q Consensus 136 ~~lW~eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~~~ 215 (544)
-..|.+||+|++|++++|++..++.|..++.. ++.. +.+||+||+|+||||+|+++|+.+++....-....++
T Consensus 3 ~~pl~~kyRP~~f~~liGq~~i~~~L~~~l~~------~rl~-~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~C 75 (620)
T PRK14948 3 YEPLHHKYRPQRFDELVGQEAIATTLKNALIS------NRIA-PAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPC 75 (620)
T ss_pred cchHHHHhCCCcHhhccChHHHHHHHHHHHHc------CCCC-ceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCC
Confidence 35799999999999999999999999999976 4443 7899999999999999999999998742111000111
Q ss_pred hhhhhhhccccC---------cccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHH
Q 009072 216 IWQEYMHNCKTG---------LEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLL 286 (544)
Q Consensus 216 ~~~e~l~~~~~g---------~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~ 286 (544)
...+.+.....| .......+.++++++.+..... .++.+||||||+|.+... ..+.|+
T Consensus 76 g~C~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~--------~~~~KViIIDEad~Lt~~-----a~naLL 142 (620)
T PRK14948 76 GKCELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPV--------QARWKVYVIDECHMLSTA-----AFNALL 142 (620)
T ss_pred cccHHHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChh--------cCCceEEEEECccccCHH-----HHHHHH
Confidence 111111100000 0011334677888876642221 134679999999998643 346788
Q ss_pred HHHhcCCCcEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 009072 287 LLVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQ 366 (544)
Q Consensus 287 ~~~~~~~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~l~~Ia~ 366 (544)
++++.....++||+.++.. ...++.+.+| |..+.|.+++..++..+|..++.++++.++++++..|++
T Consensus 143 K~LEePp~~tvfIL~t~~~----------~~llpTIrSR--c~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~ 210 (620)
T PRK14948 143 KTLEEPPPRVVFVLATTDP----------QRVLPTIISR--CQRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQ 210 (620)
T ss_pred HHHhcCCcCeEEEEEeCCh----------hhhhHHHHhh--eeEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 8888876666666544211 1123455554 999999999999999999999999999999999999999
Q ss_pred HcCCcHHHHHHHHHHhccC
Q 009072 367 ASGGDIRQAITSLQFSSLK 385 (544)
Q Consensus 367 ~s~GDiR~aIn~Lq~~~~~ 385 (544)
.++||+|.|++.|+.+++.
T Consensus 211 ~s~G~lr~A~~lLeklsL~ 229 (620)
T PRK14948 211 RSQGGLRDAESLLDQLSLL 229 (620)
T ss_pred HcCCCHHHHHHHHHHHHhc
Confidence 9999999999999987654
No 45
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=1.7e-22 Score=212.58 Aligned_cols=265 Identities=15% Similarity=0.166 Sum_probs=185.2
Q ss_pred cccccccccccCCccCccccccccccccccccccCCCCCChhhhhhhhhhhhhccCcccccCCCCCCCCCCCcCCCCCCC
Q 009072 59 NVEHFLTPSRFEGLVNPKRDLALGSSSRQQLWTNKNKPCSLEEHAIQKENVGRFLTPSRFEGLVNPDHDSASASSSTQQL 138 (544)
Q Consensus 59 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ed~~~~l~~~~i~~~~~~~~~~~~~~~~~~~l 138 (544)
++++..++..||||+|++++.++.+|+..+ .+. ++++|..++...+. . + -.-
T Consensus 372 ~~~l~~iA~~thGyvGaDL~~l~~ea~~~~---~r~----------~~~~~~~A~~~i~p--s----a---------~Re 423 (693)
T KOG0730|consen 372 DVDLEDIAVSTHGYVGADLAALCREASLQA---TRR----------TLEIFQEALMGIRP--S----A---------LRE 423 (693)
T ss_pred hhhHHHHHHHccchhHHHHHHHHHHHHHHH---hhh----------hHHHHHHHHhcCCc--h----h---------hhh
Confidence 377788999999999999999999988877 221 56677777662222 1 0 111
Q ss_pred cccccCCCCcchhccChHHHHHHHHHHHHhhcCCC-----CCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCC
Q 009072 139 WAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSK-----DKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPT 213 (544)
Q Consensus 139 W~eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~-----g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~ 213 (544)
-+...+..+|+|+.|.++.+++++..+....+.+. |..|++.+|||||||||||++|+++|++.+.+++.+.+|.
T Consensus 424 ~~ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpE 503 (693)
T KOG0730|consen 424 ILVEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPE 503 (693)
T ss_pred eeccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHH
Confidence 13456678999999999999999988876655433 6556699999999999999999999999999999998876
Q ss_pred chhhhhhhhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCch------hHHHHHHHHHHH
Q 009072 214 PTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGR------TAFERLRQCLLL 287 (544)
Q Consensus 214 ~~~~~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~------~~~~~~~~~L~~ 287 (544)
. ....+..+...+++++.+++..+ |+||||||+|.+... ++.+|+.+.|+.
T Consensus 504 L-----------~sk~vGeSEr~ir~iF~kAR~~a------------P~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLt 560 (693)
T KOG0730|consen 504 L-----------FSKYVGESERAIREVFRKARQVA------------PCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLT 560 (693)
T ss_pred H-----------HHHhcCchHHHHHHHHHHHhhcC------------CeEEehhhHHhHhhccCCCccchHHHHHHHHHH
Confidence 2 23445566788999999997653 799999999987432 234666644443
Q ss_pred HHhc-CCCcEEEEEccCCCCCCCCccccchHHHHHHHhhcC-ceeEEecCCCHHHHHHHHHHHHHHhCCCCCHH-HHHHH
Q 009072 288 LVRS-THIPTAVVLTECGKADSVDSTAQSFEELQSILVDAG-ARKVALNPITNGSIKRTLSKICRQEQYSLSTE-QIDLV 364 (544)
Q Consensus 288 ~~~~-~~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~-~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~-~l~~I 364 (544)
-++. .....|+|++.++..+.. ..++++..| ...|.+++|+.+....+|+..+++ ++++++ .++.|
T Consensus 561 EmDG~e~~k~V~ViAATNRpd~I---------D~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kk--mp~~~~vdl~~L 629 (693)
T KOG0730|consen 561 EMDGLEALKNVLVIAATNRPDMI---------DPALLRPGRLDRIIYVPLPDLEARLEILKQCAKK--MPFSEDVDLEEL 629 (693)
T ss_pred HcccccccCcEEEEeccCChhhc---------CHHHcCCcccceeEeecCccHHHHHHHHHHHHhc--CCCCccccHHHH
Confidence 3332 222234444443322211 144454212 567888888888888888876655 445444 78888
Q ss_pred HHH----cCCcHHHHHHHHHHhccC
Q 009072 365 AQA----SGGDIRQAITSLQFSSLK 385 (544)
Q Consensus 365 a~~----s~GDiR~aIn~Lq~~~~~ 385 (544)
++. ||-||+..++--..+++.
T Consensus 630 a~~T~g~SGAel~~lCq~A~~~a~~ 654 (693)
T KOG0730|consen 630 AQATEGYSGAEIVAVCQEAALLALR 654 (693)
T ss_pred HHHhccCChHHHHHHHHHHHHHHHH
Confidence 887 445888877766666653
No 46
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.88 E-value=2.6e-21 Score=209.79 Aligned_cols=214 Identities=21% Similarity=0.260 Sum_probs=153.2
Q ss_pred CCcccccCCCCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCCchh
Q 009072 137 QLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTI 216 (544)
Q Consensus 137 ~lW~eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~~~~ 216 (544)
..|..||||++|+|++|++..++.|+.++.. |+.+ +.+||+||||+||||+|+++|+.+++.--. ...++.
T Consensus 4 ~~l~~kyRP~~f~diiGqe~iv~~L~~~i~~------~~i~-hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~--~~~pC~ 74 (563)
T PRK06647 4 RGTATKRRPRDFNSLEGQDFVVETLKHSIES------NKIA-NAYIFSGPRGVGKTSSARAFARCLNCVNGP--TPMPCG 74 (563)
T ss_pred HHHHHHhCCCCHHHccCcHHHHHHHHHHHHc------CCCC-eEEEEECCCCCCHHHHHHHHHHhhccccCC--CCCCCc
Confidence 3468899999999999999999999999976 5555 789999999999999999999998764100 000110
Q ss_pred hhhhhhccccC--cc-------cccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHHH
Q 009072 217 WQEYMHNCKTG--LE-------YTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLL 287 (544)
Q Consensus 217 ~~e~l~~~~~g--~~-------~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~ 287 (544)
....+.....+ .. .....+.++++.+.+...+ ...+++|+||||++.++.. .+++|++
T Consensus 75 ~C~~C~~i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p--------~~~~~KVvIIDEa~~Ls~~-----a~naLLK 141 (563)
T PRK06647 75 ECSSCKSIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPP--------ASSRYRVYIIDEVHMLSNS-----AFNALLK 141 (563)
T ss_pred cchHHHHHHcCCCCCeEEecCcccCCHHHHHHHHHHHHhch--------hcCCCEEEEEEChhhcCHH-----HHHHHHH
Confidence 00000000000 00 0122356666665553221 1245789999999998643 3467888
Q ss_pred HHhcCCCcEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 009072 288 LVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQA 367 (544)
Q Consensus 288 ~~~~~~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~l~~Ia~~ 367 (544)
.++..+..++||.+++.. . ..++++.+| |..+.|.+++.+++.++|.+++..+|+.++++++..|++.
T Consensus 142 ~LEepp~~~vfI~~tte~--------~--kL~~tI~SR--c~~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~ 209 (563)
T PRK06647 142 TIEEPPPYIVFIFATTEV--------H--KLPATIKSR--CQHFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYK 209 (563)
T ss_pred hhccCCCCEEEEEecCCh--------H--HhHHHHHHh--ceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 888866667776654221 1 112445554 8999999999999999999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHhcc
Q 009072 368 SGGDIRQAITSLQFSSL 384 (544)
Q Consensus 368 s~GDiR~aIn~Lq~~~~ 384 (544)
++||+|.|++.|+-++.
T Consensus 210 s~GdlR~alslLdklis 226 (563)
T PRK06647 210 STGSVRDAYTLFDQVVS 226 (563)
T ss_pred cCCCHHHHHHHHHHHHh
Confidence 99999999999976543
No 47
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.88 E-value=2.2e-21 Score=211.57 Aligned_cols=215 Identities=18% Similarity=0.298 Sum_probs=152.7
Q ss_pred CcccccCCCCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEE----EeC--
Q 009072 138 LWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYE----WDT-- 211 (544)
Q Consensus 138 lW~eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~vie----i~~-- 211 (544)
...+||||.+|+|++||+..++.|++++.. |+.+ +.+||+||+||||||+|+++|+.+.+.... |..
T Consensus 5 ~l~~kyRP~~f~eivGQe~i~~~L~~~i~~------~ri~-ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~ 77 (620)
T PRK14954 5 VIARKYRPSKFADITAQEHITHTIQNSLRM------DRVG-HGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEV 77 (620)
T ss_pred HHHHHHCCCCHHHhcCcHHHHHHHHHHHHc------CCCC-eeEEEECCCCCCHHHHHHHHHHHhCCCCcCCcccccccc
Confidence 357899999999999999999999998865 5655 789999999999999999999999884210 000
Q ss_pred CCchhhhhhhhccccC--cc-------cccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHH
Q 009072 212 PTPTIWQEYMHNCKTG--LE-------YTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLR 282 (544)
Q Consensus 212 s~~~~~~e~l~~~~~g--~~-------~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~ 282 (544)
.+++.....+.....| .. .....+.++++.+.+..... .+.++|+||||++.++.. ..
T Consensus 78 ~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~--------~~~~KVvIIdEad~Lt~~-----a~ 144 (620)
T PRK14954 78 TEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQ--------KGRYRVYIIDEVHMLSTA-----AF 144 (620)
T ss_pred CCCCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhh--------cCCCEEEEEeChhhcCHH-----HH
Confidence 0111000011000000 00 11224677777766642211 134679999999998653 24
Q ss_pred HHHHHHHhcCCCcEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHH
Q 009072 283 QCLLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQID 362 (544)
Q Consensus 283 ~~L~~~~~~~~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~l~ 362 (544)
+.|+++++.....+++|+.+.. ....++++.+| |..+.|.+++..++.++|.+++..+|+.+++++++
T Consensus 145 naLLK~LEePp~~tv~IL~t~~----------~~kLl~TI~SR--c~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~ 212 (620)
T PRK14954 145 NAFLKTLEEPPPHAIFIFATTE----------LHKIPATIASR--CQRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQ 212 (620)
T ss_pred HHHHHHHhCCCCCeEEEEEeCC----------hhhhhHHHHhh--ceEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 6788888887655555543321 11122445554 99999999999999999999999999999999999
Q ss_pred HHHHHcCCcHHHHHHHHHHhcc
Q 009072 363 LVAQASGGDIRQAITSLQFSSL 384 (544)
Q Consensus 363 ~Ia~~s~GDiR~aIn~Lq~~~~ 384 (544)
.|++.++||+|.+++.|+-++.
T Consensus 213 ~La~~s~Gdlr~al~eLeKL~~ 234 (620)
T PRK14954 213 LIARKAQGSMRDAQSILDQVIA 234 (620)
T ss_pred HHHHHhCCCHHHHHHHHHHHHH
Confidence 9999999999999999986654
No 48
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.88 E-value=2.3e-21 Score=202.54 Aligned_cols=211 Identities=18% Similarity=0.322 Sum_probs=148.3
Q ss_pred CCcccccCCCCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCCchh
Q 009072 137 QLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTI 216 (544)
Q Consensus 137 ~lW~eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~~~~ 216 (544)
..|.+||+|++++|++||+..++.+..+++. |..+ +++|||||||+|||++|+++|+.+......-..... .
T Consensus 5 ~~~~~k~rP~~~~~iig~~~~~~~l~~~i~~------~~~~-~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~-~ 76 (367)
T PRK14970 5 VVSARKYRPQTFDDVVGQSHITNTLLNAIEN------NHLA-QALLFCGPRGVGKTTCARILARKINQPGYDDPNEDF-S 76 (367)
T ss_pred HHHHHHHCCCcHHhcCCcHHHHHHHHHHHHc------CCCC-eEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCC-C
Confidence 5699999999999999999999999999875 5544 789999999999999999999998653211000000 0
Q ss_pred hhhhhhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHHHHHhcCCCcE
Q 009072 217 WQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPT 296 (544)
Q Consensus 217 ~~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~~~~~~~~pi 296 (544)
+ . +.... +. .....+.+++.++.+...+. ..++.||+|||++.+... .++.|+..++......
T Consensus 77 ~-~-~~~l~-~~-~~~~~~~i~~l~~~~~~~p~--------~~~~kiviIDE~~~l~~~-----~~~~ll~~le~~~~~~ 139 (367)
T PRK14970 77 F-N-IFELD-AA-SNNSVDDIRNLIDQVRIPPQ--------TGKYKIYIIDEVHMLSSA-----AFNAFLKTLEEPPAHA 139 (367)
T ss_pred c-c-eEEec-cc-cCCCHHHHHHHHHHHhhccc--------cCCcEEEEEeChhhcCHH-----HHHHHHHHHhCCCCce
Confidence 0 0 00000 00 01122556666665542221 134679999999988643 2355666666654444
Q ss_pred EEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHH
Q 009072 297 AVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIRQAI 376 (544)
Q Consensus 297 IiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~l~~Ia~~s~GDiR~aI 376 (544)
++|++.+.. ...++++.+| |..+.|.+++..++..+|..++.++|+.+++++++.|+..++||+|.++
T Consensus 140 ~~Il~~~~~----------~kl~~~l~sr--~~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~gdlr~~~ 207 (367)
T PRK14970 140 IFILATTEK----------HKIIPTILSR--CQIFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADGALRDAL 207 (367)
T ss_pred EEEEEeCCc----------ccCCHHHHhc--ceeEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCHHHHH
Confidence 444333211 1112344444 7899999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcc
Q 009072 377 TSLQFSSL 384 (544)
Q Consensus 377 n~Lq~~~~ 384 (544)
+.|+.++.
T Consensus 208 ~~lekl~~ 215 (367)
T PRK14970 208 SIFDRVVT 215 (367)
T ss_pred HHHHHHHH
Confidence 99998875
No 49
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.88 E-value=2.9e-21 Score=212.21 Aligned_cols=215 Identities=20% Similarity=0.285 Sum_probs=151.1
Q ss_pred CCcccccCCCCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCCchh
Q 009072 137 QLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTI 216 (544)
Q Consensus 137 ~lW~eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~~~~ 216 (544)
+-|.+||||++|+|++|++..++.|+.++.. |+.+ +.+||+||+|+||||+|+.+|+.+++..-. ....++.
T Consensus 4 ~~l~~kyRP~~~~eiiGq~~~~~~L~~~i~~------~~i~-~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~-~~~~~c~ 75 (585)
T PRK14950 4 QVLYRKWRSQTFAELVGQEHVVQTLRNAIAE------GRVA-HAYLFTGPRGVGKTSTARILAKAVNCTTND-PKGRPCG 75 (585)
T ss_pred HHHHHHhCCCCHHHhcCCHHHHHHHHHHHHh------CCCc-eEEEEECCCCCCHHHHHHHHHHHhcCCCCC-CCCCCCc
Confidence 3478999999999999999999999999876 4443 678999999999999999999998753210 0001111
Q ss_pred hhhhhhccccCc--c-------cccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHHH
Q 009072 217 WQEYMHNCKTGL--E-------YTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLL 287 (544)
Q Consensus 217 ~~e~l~~~~~g~--~-------~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~ 287 (544)
....+.....+. . .....+.++++++.+..... ....+||||||++.+... ..+.|++
T Consensus 76 ~c~~c~~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~--------~~~~kVvIIDEa~~L~~~-----a~naLLk 142 (585)
T PRK14950 76 TCEMCRAIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPA--------LARYKVYIIDEVHMLSTA-----AFNALLK 142 (585)
T ss_pred cCHHHHHHhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcc--------cCCeEEEEEeChHhCCHH-----HHHHHHH
Confidence 111111110010 0 11234566776665543221 134679999999998643 2356777
Q ss_pred HHhcCCCcEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 009072 288 LVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQA 367 (544)
Q Consensus 288 ~~~~~~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~l~~Ia~~ 367 (544)
+++......+||+.... ....+..+.+ +|..+.|.+++..++..+|..++..+|+.++++++..|+..
T Consensus 143 ~LEepp~~tv~Il~t~~----------~~kll~tI~S--R~~~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~ 210 (585)
T PRK14950 143 TLEEPPPHAIFILATTE----------VHKVPATILS--RCQRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARA 210 (585)
T ss_pred HHhcCCCCeEEEEEeCC----------hhhhhHHHHh--ccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 78776544555544321 0112234444 48999999999999999999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHhcc
Q 009072 368 SGGDIRQAITSLQFSSL 384 (544)
Q Consensus 368 s~GDiR~aIn~Lq~~~~ 384 (544)
++||+|.+++.|+.++.
T Consensus 211 s~Gdlr~al~~LekL~~ 227 (585)
T PRK14950 211 ATGSMRDAENLLQQLAT 227 (585)
T ss_pred cCCCHHHHHHHHHHHHH
Confidence 99999999999998765
No 50
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.87 E-value=1e-21 Score=184.92 Aligned_cols=207 Identities=19% Similarity=0.265 Sum_probs=130.9
Q ss_pred CCCCCcccccCCCCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCC
Q 009072 134 STQQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPT 213 (544)
Q Consensus 134 ~~~~lW~eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~ 213 (544)
..+..+.+++||++++|++|+++.+..++-+++..... +... .++|||||||+||||+|+.+|++++.++...+++.
T Consensus 9 ~~~~~l~~~lRP~~L~efiGQ~~l~~~l~i~i~aa~~r--~~~l-~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~ 85 (233)
T PF05496_consen 9 EEEAPLAERLRPKSLDEFIGQEHLKGNLKILIRAAKKR--GEAL-DHMLFYGPPGLGKTTLARIIANELGVNFKITSGPA 85 (233)
T ss_dssp ---S-HHHHTS-SSCCCS-S-HHHHHHHHHHHHHHHCT--TS----EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC
T ss_pred CcchhhHHhcCCCCHHHccCcHHHHhhhHHHHHHHHhc--CCCc-ceEEEECCCccchhHHHHHHHhccCCCeEeccchh
Confidence 34567889999999999999999999999888876542 2222 68999999999999999999999999998887754
Q ss_pred chhhhhhhhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHHHHHhcCC
Q 009072 214 PTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTH 293 (544)
Q Consensus 214 ~~~~~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~~~~~~~ 293 (544)
.. . ...+...+... ++..|||||||++++. ..++.|...++...
T Consensus 86 i~-----------k------~~dl~~il~~l--------------~~~~ILFIDEIHRlnk-----~~qe~LlpamEd~~ 129 (233)
T PF05496_consen 86 IE-----------K------AGDLAAILTNL--------------KEGDILFIDEIHRLNK-----AQQEILLPAMEDGK 129 (233)
T ss_dssp -------------S------CHHHHHHHHT----------------TT-EEEECTCCC--H-----HHHHHHHHHHHCSE
T ss_pred hh-----------h------HHHHHHHHHhc--------------CCCcEEEEechhhccH-----HHHHHHHHHhccCe
Confidence 11 1 12233333321 2356999999999754 24477888888753
Q ss_pred CcEEEEEccCCCCCCC--C--------ccccchHHH-HHHHhhcCceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHH
Q 009072 294 IPTAVVLTECGKADSV--D--------STAQSFEEL-QSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQID 362 (544)
Q Consensus 294 ~piIiI~t~~~~~~~~--d--------~~~~~l~~l-~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~l~ 362 (544)
. -+|+......... + ...+ ...+ .++..|+ ....++..++.+++.+++.+-+...++.++++...
T Consensus 130 i--diiiG~g~~ar~~~~~l~~FTligATTr-~g~ls~pLrdRF-gi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~ 205 (233)
T PF05496_consen 130 I--DIIIGKGPNARSIRINLPPFTLIGATTR-AGLLSSPLRDRF-GIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAE 205 (233)
T ss_dssp E--EEEBSSSSS-BEEEEE----EEEEEESS-GCCTSHCCCTTS-SEEEE----THHHHHHHHHHCCHCTT-EE-HHHHH
T ss_pred E--EEEeccccccceeeccCCCceEeeeecc-ccccchhHHhhc-ceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHH
Confidence 2 1222111000000 0 0000 0111 3344554 33568999999999999999999999999999999
Q ss_pred HHHHHcCCcHHHHHHHHHHhc
Q 009072 363 LVAQASGGDIRQAITSLQFSS 383 (544)
Q Consensus 363 ~Ia~~s~GDiR~aIn~Lq~~~ 383 (544)
.||..|.|+.|-|.+.|+..-
T Consensus 206 ~Ia~rsrGtPRiAnrll~rvr 226 (233)
T PF05496_consen 206 EIARRSRGTPRIANRLLRRVR 226 (233)
T ss_dssp HHHHCTTTSHHHHHHHHHHHC
T ss_pred HHHHhcCCChHHHHHHHHHHH
Confidence 999999999999999998753
No 51
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.87 E-value=2.8e-21 Score=189.81 Aligned_cols=199 Identities=22% Similarity=0.339 Sum_probs=152.0
Q ss_pred CCCcccccCCCCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeCC
Q 009072 136 QQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTP 212 (544)
Q Consensus 136 ~~lW~eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~el---g~~viei~~s 212 (544)
..++.|+.||++++|.+|+++.+.+ ...|...++. ++. +.++|+|||||||||+|+.||... .|.++++.+.
T Consensus 125 h~PLaermRPktL~dyvGQ~hlv~q-~gllrs~ieq--~~i--pSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt 199 (554)
T KOG2028|consen 125 HKPLAERMRPKTLDDYVGQSHLVGQ-DGLLRSLIEQ--NRI--PSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSAT 199 (554)
T ss_pred cCChhhhcCcchHHHhcchhhhcCc-chHHHHHHHc--CCC--CceEEecCCCCchHHHHHHHHhhcCCCceEEEEEecc
Confidence 4567899999999999999998876 4455444432 555 589999999999999999999876 3558887653
Q ss_pred CchhhhhhhhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHH-HHHHHHHhc
Q 009072 213 TPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLR-QCLLLLVRS 291 (544)
Q Consensus 213 ~~~~~~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~-~~L~~~~~~ 291 (544)
. .+ ...++++++.+.++..+ .+++.|||||||++. ++.+ +.++..++.
T Consensus 200 ~------------a~------t~dvR~ife~aq~~~~l-------~krkTilFiDEiHRF------NksQQD~fLP~VE~ 248 (554)
T KOG2028|consen 200 N------------AK------TNDVRDIFEQAQNEKSL-------TKRKTILFIDEIHRF------NKSQQDTFLPHVEN 248 (554)
T ss_pred c------------cc------hHHHHHHHHHHHHHHhh-------hcceeEEEeHHhhhh------hhhhhhcccceecc
Confidence 2 22 25678889988877543 257889999999984 4443 667777877
Q ss_pred CCCcEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHH----h---------CCCCCH
Q 009072 292 THIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQ----E---------QYSLST 358 (544)
Q Consensus 292 ~~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~----e---------~~~i~~ 358 (544)
+. +++|-.++. ++.+....++++| |.++.+++++.+.+..+|.+.... + .+.+++
T Consensus 249 G~--I~lIGATTE--------NPSFqln~aLlSR--C~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~ 316 (554)
T KOG2028|consen 249 GD--ITLIGATTE--------NPSFQLNAALLSR--CRVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVED 316 (554)
T ss_pred Cc--eEEEecccC--------CCccchhHHHHhc--cceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhH
Confidence 63 455544432 3455556788886 999999999999999999985431 1 124778
Q ss_pred HHHHHHHHHcCCcHHHHHHHHHHh
Q 009072 359 EQIDLVAQASGGDIRQAITSLQFS 382 (544)
Q Consensus 359 ~~l~~Ia~~s~GDiR~aIn~Lq~~ 382 (544)
.+++.|+..+.||.|.|+|.||+.
T Consensus 317 siidyla~lsdGDaR~aLN~Lems 340 (554)
T KOG2028|consen 317 SIIDYLAYLSDGDARAALNALEMS 340 (554)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHH
Confidence 999999999999999999999987
No 52
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.87 E-value=3.7e-21 Score=203.56 Aligned_cols=197 Identities=25% Similarity=0.409 Sum_probs=148.1
Q ss_pred CcccccCCCCcchhccChHHHHH---HHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCCc
Q 009072 138 LWAEKYKPRSLEELAVQRKKVEE---VRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTP 214 (544)
Q Consensus 138 lW~eky~P~~~~dLv~~~~~~~~---l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~~ 214 (544)
+|++||||++++|++|++..+.. +..++.. +.. ++++|+|||||||||+|+++|+.++..++++++...
T Consensus 1 pla~~~RP~~l~d~vGq~~~v~~~~~L~~~i~~------~~~--~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~ 72 (413)
T PRK13342 1 PLAERMRPKTLDEVVGQEHLLGPGKPLRRMIEA------GRL--SSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTS 72 (413)
T ss_pred ChhhhhCCCCHHHhcCcHHHhCcchHHHHHHHc------CCC--ceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc
Confidence 59999999999999999999777 8777754 333 589999999999999999999999999999887531
Q ss_pred hhhhhhhhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHHHHHhcCCC
Q 009072 215 TIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHI 294 (544)
Q Consensus 215 ~~~~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~~~~~~~~ 294 (544)
+ ...++.+++.+..... .+++.||||||++.+... .++.|+..++..
T Consensus 73 ------------~------~~~ir~ii~~~~~~~~--------~g~~~vL~IDEi~~l~~~-----~q~~LL~~le~~-- 119 (413)
T PRK13342 73 ------------G------VKDLREVIEEARQRRS--------AGRRTILFIDEIHRFNKA-----QQDALLPHVEDG-- 119 (413)
T ss_pred ------------c------HHHHHHHHHHHHHhhh--------cCCceEEEEechhhhCHH-----HHHHHHHHhhcC--
Confidence 1 1345555555533210 135679999999987542 235677777764
Q ss_pred cEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHHh--CC-CCCHHHHHHHHHHcCCc
Q 009072 295 PTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQE--QY-SLSTEQIDLVAQASGGD 371 (544)
Q Consensus 295 piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e--~~-~i~~~~l~~Ia~~s~GD 371 (544)
.+++|.+++.. .......++++| |..+.|.+++.+++..+|.+++... ++ .+++++++.|++.++||
T Consensus 120 ~iilI~att~n--------~~~~l~~aL~SR--~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd 189 (413)
T PRK13342 120 TITLIGATTEN--------PSFEVNPALLSR--AQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGD 189 (413)
T ss_pred cEEEEEeCCCC--------hhhhccHHHhcc--ceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCC
Confidence 34555443211 111222455555 7899999999999999999988763 44 79999999999999999
Q ss_pred HHHHHHHHHHhccC
Q 009072 372 IRQAITSLQFSSLK 385 (544)
Q Consensus 372 iR~aIn~Lq~~~~~ 385 (544)
+|.++|.|+..+..
T Consensus 190 ~R~aln~Le~~~~~ 203 (413)
T PRK13342 190 ARRALNLLELAALG 203 (413)
T ss_pred HHHHHHHHHHHHHc
Confidence 99999999998654
No 53
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.86 E-value=3.7e-21 Score=203.04 Aligned_cols=216 Identities=19% Similarity=0.341 Sum_probs=166.0
Q ss_pred CcccccCCCCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCCchhh
Q 009072 138 LWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIW 217 (544)
Q Consensus 138 lW~eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~~~~~ 217 (544)
.+..||||++|+|++|++..++.|...+.. ++.. +..||+||-||||||+||.+|+.+++.-- ...+++..
T Consensus 5 ~L~rKyRP~~F~evvGQe~v~~~L~nal~~------~ri~-hAYlfsG~RGvGKTt~Ari~AkalNC~~~--~~~ePC~~ 75 (515)
T COG2812 5 VLARKYRPKTFDDVVGQEHVVKTLSNALEN------GRIA-HAYLFSGPRGVGKTTIARILAKALNCENG--PTAEPCGK 75 (515)
T ss_pred HHHHHhCcccHHHhcccHHHHHHHHHHHHh------Ccch-hhhhhcCCCCcCchhHHHHHHHHhcCCCC--CCCCcchh
Confidence 356799999999999999999999999887 5555 89999999999999999999999987631 11122222
Q ss_pred hhhhhccccC--cc-------cccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHHHH
Q 009072 218 QEYMHNCKTG--LE-------YTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLL 288 (544)
Q Consensus 218 ~e~l~~~~~g--~~-------~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~~ 288 (544)
...+..+..| ++ .....+.++++.+++. |.. ..++.+|++|||+++++.. ..++|++.
T Consensus 76 C~~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~-y~P-------~~~ryKVyiIDEvHMLS~~-----afNALLKT 142 (515)
T COG2812 76 CISCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVN-YAP-------SEGRYKVYIIDEVHMLSKQ-----AFNALLKT 142 (515)
T ss_pred hhhhHhhhcCCcccchhhhhhhccChHHHHHHHHHhc-cCC-------ccccceEEEEecHHhhhHH-----HHHHHhcc
Confidence 2222222222 11 1234477888888874 432 2367899999999998653 34678888
Q ss_pred HhcCCCcEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHc
Q 009072 289 VRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQAS 368 (544)
Q Consensus 289 ~~~~~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~l~~Ia~~s 368 (544)
+++.+..++||..++.... .+..+++| |+.+.|.+++.++|...|..|+.+|++.++++++..|+..+
T Consensus 143 LEEPP~hV~FIlATTe~~K----------ip~TIlSR--cq~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a 210 (515)
T COG2812 143 LEEPPSHVKFILATTEPQK----------IPNTILSR--CQRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAA 210 (515)
T ss_pred cccCccCeEEEEecCCcCc----------Cchhhhhc--cccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHc
Confidence 9998888888887764321 12456665 99999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHhccCCC
Q 009072 369 GGDIRQAITSLQFSSLKQD 387 (544)
Q Consensus 369 ~GDiR~aIn~Lq~~~~~~~ 387 (544)
+|.+|-+++.|..+...+.
T Consensus 211 ~Gs~RDalslLDq~i~~~~ 229 (515)
T COG2812 211 EGSLRDALSLLDQAIAFGE 229 (515)
T ss_pred CCChhhHHHHHHHHHHccC
Confidence 9999999999977665443
No 54
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.85 E-value=3.3e-20 Score=176.60 Aligned_cols=219 Identities=17% Similarity=0.316 Sum_probs=151.5
Q ss_pred CCcccccCCCCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHh-C-------CeEEE
Q 009072 137 QLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL-G-------ARLYE 208 (544)
Q Consensus 137 ~lW~eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~el-g-------~~vie 208 (544)
.+|+|||+|+++..+.++++...+++..... +.. +++++|||+|.||.|.+.++.+++ | ...-.
T Consensus 1 ~LWvdkyrpksl~~l~~~~e~~~~Lksl~~~------~d~--PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t 72 (351)
T KOG2035|consen 1 MLWVDKYRPKSLDELIYHEELANLLKSLSST------GDF--PHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRT 72 (351)
T ss_pred CcchhhcCcchhhhcccHHHHHHHHHHhccc------CCC--CeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEE
Confidence 4899999999999999999999888876653 444 589999999999999999999997 3 12223
Q ss_pred EeCCCchh---------hhhhhhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHH
Q 009072 209 WDTPTPTI---------WQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFE 279 (544)
Q Consensus 209 i~~s~~~~---------~~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~ 279 (544)
|..|..+- +.-.+.....|.. ..-.+++++.++.+...+ ...++...+|++|-|+|.+...
T Consensus 73 ~~tpS~kklEistvsS~yHlEitPSDaG~~---DRvViQellKevAQt~qi---e~~~qr~fKvvvi~ead~LT~d---- 142 (351)
T KOG2035|consen 73 FTTPSKKKLEISTVSSNYHLEITPSDAGNY---DRVVIQELLKEVAQTQQI---ETQGQRPFKVVVINEADELTRD---- 142 (351)
T ss_pred EecCCCceEEEEEecccceEEeChhhcCcc---cHHHHHHHHHHHHhhcch---hhccccceEEEEEechHhhhHH----
Confidence 33332220 0000000111111 112355666665544332 2223456789999999988542
Q ss_pred HHHHHHHHHHhc--CCCcEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHHhCCCCC
Q 009072 280 RLRQCLLLLVRS--THIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLS 357 (544)
Q Consensus 280 ~~~~~L~~~~~~--~~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~ 357 (544)
.+.+|+..++. +.+.+|++|+.+ .+..++++ + ||..|+.+.|+++++..+|.+++.+|++.++
T Consensus 143 -AQ~aLRRTMEkYs~~~RlIl~cns~---------SriIepIr---S--RCl~iRvpaps~eeI~~vl~~v~~kE~l~lp 207 (351)
T KOG2035|consen 143 -AQHALRRTMEKYSSNCRLILVCNST---------SRIIEPIR---S--RCLFIRVPAPSDEEITSVLSKVLKKEGLQLP 207 (351)
T ss_pred -HHHHHHHHHHHHhcCceEEEEecCc---------ccchhHHh---h--heeEEeCCCCCHHHHHHHHHHHHHHhcccCc
Confidence 22233333332 234456666542 23333333 3 5999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHHhccCCCC
Q 009072 358 TEQIDLVAQASGGDIRQAITSLQFSSLKQDP 388 (544)
Q Consensus 358 ~~~l~~Ia~~s~GDiR~aIn~Lq~~~~~~~~ 388 (544)
.+.+..||+.|+||+|.||-.|+.++.+...
T Consensus 208 ~~~l~rIa~kS~~nLRrAllmlE~~~~~n~~ 238 (351)
T KOG2035|consen 208 KELLKRIAEKSNRNLRRALLMLEAVRVNNEP 238 (351)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcccc
Confidence 9999999999999999999999999987544
No 55
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.84 E-value=3.7e-20 Score=205.49 Aligned_cols=200 Identities=22% Similarity=0.354 Sum_probs=145.4
Q ss_pred CCCCcccccCCCCcchhccChHHHH---HHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeC
Q 009072 135 TQQLWAEKYKPRSLEELAVQRKKVE---EVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDT 211 (544)
Q Consensus 135 ~~~lW~eky~P~~~~dLv~~~~~~~---~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~ 211 (544)
...+|.++|||++++|++|++..+. .++.++.. +.. .+++|+|||||||||+|+++|+.++..++++++
T Consensus 14 ~~~PLaek~RP~tldd~vGQe~ii~~~~~L~~~i~~------~~~--~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna 85 (725)
T PRK13341 14 SEAPLADRLRPRTLEEFVGQDHILGEGRLLRRAIKA------DRV--GSLILYGPPGVGKTTLARIIANHTRAHFSSLNA 85 (725)
T ss_pred ccCChHHhcCCCcHHHhcCcHHHhhhhHHHHHHHhc------CCC--ceEEEECCCCCCHHHHHHHHHHHhcCcceeehh
Confidence 3458999999999999999999885 45555543 333 579999999999999999999999988888876
Q ss_pred CCchhhhhhhhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHHHHHhc
Q 009072 212 PTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRS 291 (544)
Q Consensus 212 s~~~~~~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~~~~~ 291 (544)
.. .+. ..++..++.+..... ..+++.+|||||+|.++.. .++.|+..++.
T Consensus 86 ~~------------~~i------~dir~~i~~a~~~l~-------~~~~~~IL~IDEIh~Ln~~-----qQdaLL~~lE~ 135 (725)
T PRK13341 86 VL------------AGV------KDLRAEVDRAKERLE-------RHGKRTILFIDEVHRFNKA-----QQDALLPWVEN 135 (725)
T ss_pred hh------------hhh------HHHHHHHHHHHHHhh-------hcCCceEEEEeChhhCCHH-----HHHHHHHHhcC
Confidence 43 111 223334443322110 0124679999999988642 23556777765
Q ss_pred CCCcEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHH-------HhCCCCCHHHHHHH
Q 009072 292 THIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICR-------QEQYSLSTEQIDLV 364 (544)
Q Consensus 292 ~~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~-------~e~~~i~~~~l~~I 364 (544)
+ .+++|++++. ........++++| |..+.|+|++.+++..+|++++. .+++.+++++++.|
T Consensus 136 g--~IiLI~aTTe--------np~~~l~~aL~SR--~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~L 203 (725)
T PRK13341 136 G--TITLIGATTE--------NPYFEVNKALVSR--SRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHL 203 (725)
T ss_pred c--eEEEEEecCC--------ChHhhhhhHhhcc--ccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHH
Confidence 4 3455544322 1112223455555 78999999999999999999987 45688999999999
Q ss_pred HHHcCCcHHHHHHHHHHhcc
Q 009072 365 AQASGGDIRQAITSLQFSSL 384 (544)
Q Consensus 365 a~~s~GDiR~aIn~Lq~~~~ 384 (544)
++.++||+|.++|.|+.++.
T Consensus 204 a~~s~GD~R~lln~Le~a~~ 223 (725)
T PRK13341 204 VDVANGDARSLLNALELAVE 223 (725)
T ss_pred HHhCCCCHHHHHHHHHHHHH
Confidence 99999999999999998764
No 56
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=6e-20 Score=190.84 Aligned_cols=210 Identities=15% Similarity=0.201 Sum_probs=143.3
Q ss_pred cCCCCcchhccChHHHHHHHHHHHHhhcCCC-----CCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCCchhh
Q 009072 143 YKPRSLEELAVQRKKVEEVRAWFEERLGDSK-----DKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIW 217 (544)
Q Consensus 143 y~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~-----g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~~~~~ 217 (544)
.+-.+|+|+.+.++...+|...+....+++. |..++..+||+||||||||.+|+++|+|.|.+++.+.+|..
T Consensus 505 VPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPEL--- 581 (802)
T KOG0733|consen 505 VPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPEL--- 581 (802)
T ss_pred cCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHH---
Confidence 3447999999999999999888877666543 55555899999999999999999999999999999998862
Q ss_pred hhhhhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCch------hHHHHHHHH-HHHHHh
Q 009072 218 QEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGR------TAFERLRQC-LLLLVR 290 (544)
Q Consensus 218 ~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~------~~~~~~~~~-L~~~~~ 290 (544)
......++...++.++.+++.. .||||||||+|.+-.. ..-.|+.+. |.++-.
T Consensus 582 --------lNkYVGESErAVR~vFqRAR~s------------aPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDG 641 (802)
T KOG0733|consen 582 --------LNKYVGESERAVRQVFQRARAS------------APCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDG 641 (802)
T ss_pred --------HHHHhhhHHHHHHHHHHHhhcC------------CCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcc
Confidence 2233445667889999998743 4999999999988332 234566644 444433
Q ss_pred cCCCcEEEEEccCCCCCCCCccccchHHHHHHHhhcC-ceeEEecCCCHHHHHHHHHHHHHHhCCCCCHH-HHHHHHHH-
Q 009072 291 STHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAG-ARKVALNPITNGSIKRTLSKICRQEQYSLSTE-QIDLVAQA- 367 (544)
Q Consensus 291 ~~~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~-~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~-~l~~Ia~~- 367 (544)
-...--|+|++.++..+.-| +++|+..| ...+...+|+.++...+|+.+.+..+..++++ .++.|+..
T Consensus 642 l~~R~gV~viaATNRPDiID---------pAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~ 712 (802)
T KOG0733|consen 642 LEERRGVYVIAATNRPDIID---------PAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNT 712 (802)
T ss_pred cccccceEEEeecCCCcccc---------hhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcc
Confidence 32233345555444443333 34443333 33566678889999999998887655555443 47777765
Q ss_pred -----cCCcHHHHHHHHHHhcc
Q 009072 368 -----SGGDIRQAITSLQFSSL 384 (544)
Q Consensus 368 -----s~GDiR~aIn~Lq~~~~ 384 (544)
+|-|+-..+..--++++
T Consensus 713 ~c~gftGADLaaLvreAsi~AL 734 (802)
T KOG0733|consen 713 KCEGFTGADLAALVREASILAL 734 (802)
T ss_pred cccCCchhhHHHHHHHHHHHHH
Confidence 44577665554444443
No 57
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.82 E-value=4.2e-19 Score=182.53 Aligned_cols=203 Identities=17% Similarity=0.194 Sum_probs=142.7
Q ss_pred CCCCCcccccCCCCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCC
Q 009072 134 STQQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPT 213 (544)
Q Consensus 134 ~~~~lW~eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~ 213 (544)
....+|..+|+|.++++++|+++.++.+..++..+... +.+ .+++||+||||||||++|+++|++++..+....++.
T Consensus 10 ~~~~~~~~~~rP~~~~~~vG~~~~~~~l~~~l~~~~~~--~~~-~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~ 86 (328)
T PRK00080 10 EEEDEIERSLRPKSLDEFIGQEKVKENLKIFIEAAKKR--GEA-LDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPA 86 (328)
T ss_pred cccchhhhhcCcCCHHHhcCcHHHHHHHHHHHHHHHhc--CCC-CCcEEEECCCCccHHHHHHHHHHHhCCCeEEEeccc
Confidence 34567888999999999999999999999999876432 222 378999999999999999999999998877665542
Q ss_pred chhhhhhhhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHHHH-----
Q 009072 214 PTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLL----- 288 (544)
Q Consensus 214 ~~~~~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~~----- 288 (544)
.. ....+..++... ..+.||+|||++.+.... ...+...+...
T Consensus 87 ~~-----------------~~~~l~~~l~~l--------------~~~~vl~IDEi~~l~~~~-~e~l~~~~e~~~~~~~ 134 (328)
T PRK00080 87 LE-----------------KPGDLAAILTNL--------------EEGDVLFIDEIHRLSPVV-EEILYPAMEDFRLDIM 134 (328)
T ss_pred cc-----------------ChHHHHHHHHhc--------------ccCCEEEEecHhhcchHH-HHHHHHHHHhcceeee
Confidence 10 012233333321 235699999999986421 11222222211
Q ss_pred HhcC---------CCcEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHHhCCCCCHH
Q 009072 289 VRST---------HIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTE 359 (544)
Q Consensus 289 ~~~~---------~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~ 359 (544)
+... -.|.++|.+++.. ..+ ..++.+|+ ...+.|.+++.+++.++|.+.+...++.++++
T Consensus 135 l~~~~~~~~~~~~l~~~~li~at~~~--------~~l--~~~L~sRf-~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~ 203 (328)
T PRK00080 135 IGKGPAARSIRLDLPPFTLIGATTRA--------GLL--TSPLRDRF-GIVQRLEFYTVEELEKIVKRSARILGVEIDEE 203 (328)
T ss_pred eccCccccceeecCCCceEEeecCCc--------ccC--CHHHHHhc-CeeeecCCCCHHHHHHHHHHHHHHcCCCcCHH
Confidence 0000 0233344433211 011 12344553 46799999999999999999999999999999
Q ss_pred HHHHHHHHcCCcHHHHHHHHHHh
Q 009072 360 QIDLVAQASGGDIRQAITSLQFS 382 (544)
Q Consensus 360 ~l~~Ia~~s~GDiR~aIn~Lq~~ 382 (544)
+++.|++.++|++|.+.+.|+..
T Consensus 204 ~~~~ia~~~~G~pR~a~~~l~~~ 226 (328)
T PRK00080 204 GALEIARRSRGTPRIANRLLRRV 226 (328)
T ss_pred HHHHHHHHcCCCchHHHHHHHHH
Confidence 99999999999999999999864
No 58
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=4.1e-19 Score=175.26 Aligned_cols=238 Identities=17% Similarity=0.248 Sum_probs=162.1
Q ss_pred CCcccccCCCCcchhccChHHHHHHHHHHHHhhcCCC-----CCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeC
Q 009072 137 QLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSK-----DKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDT 211 (544)
Q Consensus 137 ~lW~eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~-----g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~ 211 (544)
.+=+++-+-.+++|+.|-++++++|++.++..+.++. |-.|++.+|||||||||||.+|+++|++.++.|+.+.+
T Consensus 139 ~M~v~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvg 218 (406)
T COG1222 139 VMEVEEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVG 218 (406)
T ss_pred eeeeccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEecc
Confidence 4456676778999999999999999999988776654 66677999999999999999999999999999999998
Q ss_pred CCchhhhhhhhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCch------hHHHHHHHHH
Q 009072 212 PTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGR------TAFERLRQCL 285 (544)
Q Consensus 212 s~~~~~~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~------~~~~~~~~~L 285 (544)
|.. .+++++. | ...+++++.-++.. .|+||||||||.+.+. +.-+.++..|
T Consensus 219 SEl--VqKYiGE---G------aRlVRelF~lArek------------aPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTm 275 (406)
T COG1222 219 SEL--VQKYIGE---G------ARLVRELFELAREK------------APSIIFIDEIDAIGAKRFDSGTSGDREVQRTM 275 (406)
T ss_pred HHH--HHHHhcc---c------hHHHHHHHHHHhhc------------CCeEEEEechhhhhcccccCCCCchHHHHHHH
Confidence 762 2333322 2 25567788777643 4999999999987432 1223455555
Q ss_pred HHHHhc----CC-Cc-EEEEEccCCCCCCCCccccchHHHHHHHhhcC-ceeEEecCCCHHHHHHHHHHHHHHhCCCCCH
Q 009072 286 LLLVRS----TH-IP-TAVVLTECGKADSVDSTAQSFEELQSILVDAG-ARKVALNPITNGSIKRTLSKICRQEQYSLST 358 (544)
Q Consensus 286 ~~~~~~----~~-~p-iIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~-~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~ 358 (544)
.+++.. .. .. -|+.+||. .+..| +++|+..| ...|+|+.|+.....++|+-...+..+. ++
T Consensus 276 leLL~qlDGFD~~~nvKVI~ATNR--~D~LD---------PALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~-~d 343 (406)
T COG1222 276 LELLNQLDGFDPRGNVKVIMATNR--PDILD---------PALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLA-DD 343 (406)
T ss_pred HHHHHhccCCCCCCCeEEEEecCC--ccccC---------hhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCc-cC
Confidence 555443 11 12 34444442 11111 34443222 4579999999999999999887776542 22
Q ss_pred HHHHHHHHH----cCCcHHHHHHHHHHhccCCCCCccccccCCCCCCCCccCCCCCCccccccccccchhhHhhhhhhcc
Q 009072 359 EQIDLVAQA----SGGDIRQAITSLQFSSLKQDPMLNLSLSISKPNFPEEKADGHGGFSIQFGRDETLSLFHALGKFLHN 434 (544)
Q Consensus 359 ~~l~~Ia~~----s~GDiR~aIn~Lq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rD~~l~lF~algkil~~ 434 (544)
-.++.|+.. |+-||+.+..-.-+++.+.+... +.. -++-.|+.||+..
T Consensus 344 vd~e~la~~~~g~sGAdlkaictEAGm~AiR~~R~~------------------------Vt~----~DF~~Av~KV~~~ 395 (406)
T COG1222 344 VDLELLARLTEGFSGADLKAICTEAGMFAIRERRDE------------------------VTM----EDFLKAVEKVVKK 395 (406)
T ss_pred cCHHHHHHhcCCCchHHHHHHHHHHhHHHHHhccCe------------------------ecH----HHHHHHHHHHHhc
Confidence 235555555 34489988888888887543221 122 2467888999886
Q ss_pred ccC
Q 009072 435 KRE 437 (544)
Q Consensus 435 Kr~ 437 (544)
+..
T Consensus 396 ~~~ 398 (406)
T COG1222 396 KKK 398 (406)
T ss_pred ccc
Confidence 644
No 59
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=99.81 E-value=4.1e-20 Score=179.69 Aligned_cols=211 Identities=18% Similarity=0.223 Sum_probs=149.7
Q ss_pred cCCCCCCCcccccCCCCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhCC------
Q 009072 131 ASSSTQQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGA------ 204 (544)
Q Consensus 131 ~~~~~~~lW~eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg~------ 204 (544)
..+.....|++||+|..+.|++++++.+..+.++... +.. +++|+|||||+|||+++.+.|+.+-.
T Consensus 23 ~~~~~~~pwvekyrP~~l~dv~~~~ei~st~~~~~~~------~~l--Ph~L~YgPPGtGktsti~a~a~~ly~~~~~~~ 94 (360)
T KOG0990|consen 23 QSPQYPQPWVEKYRPPFLGIVIKQEPIWSTENRYSGM------PGL--PHLLFYGPPGTGKTSTILANARDFYSPHPTTS 94 (360)
T ss_pred CCcccCCCCccCCCCchhhhHhcCCchhhHHHHhccC------CCC--CcccccCCCCCCCCCchhhhhhhhcCCCCchh
Confidence 3455688999999999999999999998888877322 444 58999999999999999999999743
Q ss_pred eEEEEeCCCchhhhhhhhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHH
Q 009072 205 RLYEWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQC 284 (544)
Q Consensus 205 ~viei~~s~~~~~~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~ 284 (544)
.+.|.|++++ +|.+.... .+..|-. +... .+. ......+.+|+||+|.+.. ..+++
T Consensus 95 m~lelnaSd~-----------rgid~vr~--qi~~fas-t~~~-~~f----st~~~fKlvILDEADaMT~-----~AQnA 150 (360)
T KOG0990|consen 95 MLLELNASDD-----------RGIDPVRQ--QIHLFAS-TQQP-TTY----STHAAFKLVILDEADAMTR-----DAQNA 150 (360)
T ss_pred HHHHhhccCc-----------cCCcchHH--HHHHHHh-hccc-eec----cccCceeEEEecchhHhhH-----HHHHH
Confidence 2567777774 34433221 1111111 1100 000 0012578999999999843 34455
Q ss_pred HHHHHhcCCC-cEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHH
Q 009072 285 LLLLVRSTHI-PTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDL 363 (544)
Q Consensus 285 L~~~~~~~~~-piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~l~~ 363 (544)
|++.++.... -.+|++++... ...+++.+ ||..++|.|++.+.+..++.++|+.+....+++...+
T Consensus 151 LRRviek~t~n~rF~ii~n~~~-----------ki~pa~qs--Rctrfrf~pl~~~~~~~r~shi~e~e~~~~~~~~~~a 217 (360)
T KOG0990|consen 151 LRRVIEKYTANTRFATISNPPQ-----------KIHPAQQS--RCTRFRFAPLTMAQQTERQSHIRESEQKETNPEGYSA 217 (360)
T ss_pred HHHHHHHhccceEEEEeccChh-----------hcCchhhc--ccccCCCCCCChhhhhhHHHHHHhcchhhcCHHHHHH
Confidence 6665554322 23444444211 11234444 4999999999999999999999999999999999999
Q ss_pred HHHHcCCcHHHHHHHHHHhccCC
Q 009072 364 VAQASGGDIRQAITSLQFSSLKQ 386 (544)
Q Consensus 364 Ia~~s~GDiR~aIn~Lq~~~~~~ 386 (544)
++..+.||+|.|+|.||-.+...
T Consensus 218 ~~r~s~gDmr~a~n~Lqs~~~~~ 240 (360)
T KOG0990|consen 218 LGRLSVGDMRVALNYLQSILKKV 240 (360)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999987643
No 60
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=4.9e-19 Score=188.39 Aligned_cols=281 Identities=15% Similarity=0.190 Sum_probs=182.2
Q ss_pred cccccccccccccccCCccCccccccccccccccccccCCC------------CCChhhhhhhhhhhhhccCcccccCCC
Q 009072 55 VQKKNVEHFLTPSRFEGLVNPKRDLALGSSSRQQLWTNKNK------------PCSLEEHAIQKENVGRFLTPSRFEGLV 122 (544)
Q Consensus 55 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~i~~~~ed~~~~l~~~~i~~~~ 122 (544)
.+.++|.+...+..|.||+-.+++.+....+.-..-+..++ ..-+.+.-+++|||.+.++ +. ..
T Consensus 580 ~~n~~v~~k~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~l~~edf~kals--~~--~~ 655 (953)
T KOG0736|consen 580 PLNQDVNLKQLARKTSGFSFGDLEALVAHSSLAAKTRIKNKGLAGGLQEEDEGELCAAGFLLTEEDFDKALS--RL--QK 655 (953)
T ss_pred ccchHHHHHHHHHhcCCCCHHHHHHHhcCchHHHHHHHHhhcccccchhccccccccccceecHHHHHHHHH--HH--HH
Confidence 36777999999999999999998887776522221111111 2225567888999999888 43 22
Q ss_pred CCCCCCCCcCCCCCCCcccccCCCCcchhccChHHHHHHHHHHHHhhcCCC----CCCCccEEEEEcCCCCcHHHHHHHH
Q 009072 123 NPDHDSASASSSTQQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSK----DKFSTNVLVITGQAGVGKTATVRQI 198 (544)
Q Consensus 123 ~~~~~~~~~~~~~~~lW~eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~----g~~~~~~lLL~GPpG~GKTtla~~l 198 (544)
.++.+.+. -|.+-.+|+|+.|-++.+.+|.+-++..+++++ |..++-.+|||||||||||.+|+++
T Consensus 656 ~fs~aiGA----------PKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAV 725 (953)
T KOG0736|consen 656 EFSDAIGA----------PKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAV 725 (953)
T ss_pred hhhhhcCC----------CCCCccchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHH
Confidence 33334443 355668999999999999999999887665432 5554578999999999999999999
Q ss_pred HHHhCCeEEEEeCCCchhhhhhhhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCc----
Q 009072 199 ASHLGARLYEWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNG---- 274 (544)
Q Consensus 199 A~elg~~viei~~s~~~~~~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~---- 274 (544)
|.|+...++.+.+|+. -.+....+..++++++++++.. .|||||+||+|.+..
T Consensus 726 ATEcsL~FlSVKGPEL-----------LNMYVGqSE~NVR~VFerAR~A------------~PCVIFFDELDSlAP~RG~ 782 (953)
T KOG0736|consen 726 ATECSLNFLSVKGPEL-----------LNMYVGQSEENVREVFERARSA------------APCVIFFDELDSLAPNRGR 782 (953)
T ss_pred HhhceeeEEeecCHHH-----------HHHHhcchHHHHHHHHHHhhcc------------CCeEEEeccccccCccCCC
Confidence 9999999999998862 2333445668899999999754 499999999998732
Q ss_pred ----hhHHHHHH-HHHHHHHhcC--CCcEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCC-CHHHHH-HHH
Q 009072 275 ----RTAFERLR-QCLLLLVRST--HIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPI-TNGSIK-RTL 345 (544)
Q Consensus 275 ----~~~~~~~~-~~L~~~~~~~--~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~-s~~~i~-~~L 345 (544)
.+.+.|+. +.|-++..-. ...-|||++.++..+..| +++|+..|...+-|-.+ ...+-+ ++|
T Consensus 783 sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRPDLLD---------pALLRPGRFDKLvyvG~~~d~esk~~vL 853 (953)
T KOG0736|consen 783 SGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPDLLD---------PALLRPGRFDKLVYVGPNEDAESKLRVL 853 (953)
T ss_pred CCCccccHHHHHHHHHHHhhcccCCCCCceEEEecCCCccccC---------hhhcCCCccceeEEecCCccHHHHHHHH
Confidence 13466766 4444443222 223355555544433322 45555545556555444 433333 334
Q ss_pred HHHHHHhCCCCCHH-HHHHHHHHc-----CCcHHHHHHHHHHhc
Q 009072 346 SKICRQEQYSLSTE-QIDLVAQAS-----GGDIRQAITSLQFSS 383 (544)
Q Consensus 346 ~~i~~~e~~~i~~~-~l~~Ia~~s-----~GDiR~aIn~Lq~~~ 383 (544)
+.+-++ .+++++ .+..||+.+ |-|+=+.+...-+.+
T Consensus 854 ~AlTrk--FkLdedVdL~eiAk~cp~~~TGADlYsLCSdA~l~A 895 (953)
T KOG0736|consen 854 EALTRK--FKLDEDVDLVEIAKKCPPNMTGADLYSLCSDAMLAA 895 (953)
T ss_pred HHHHHH--ccCCCCcCHHHHHhhCCcCCchhHHHHHHHHHHHHH
Confidence 433333 344433 477788774 455555554443333
No 61
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=6.7e-18 Score=175.76 Aligned_cols=198 Identities=19% Similarity=0.299 Sum_probs=141.0
Q ss_pred CCcchhccChHHHHHHHHHHHHhhcCCC-----CCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCCchhhhhh
Q 009072 146 RSLEELAVQRKKVEEVRAWFEERLGDSK-----DKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIWQEY 220 (544)
Q Consensus 146 ~~~~dLv~~~~~~~~l~~wL~~~~~~~~-----g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~~~~~~e~ 220 (544)
.+|.++.|.++.+.+|.+.+-. ...++ |..|++.+||+||||||||.+|+++|.|+|.+++.++++.
T Consensus 187 v~f~diGG~d~~~~el~~li~~-i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApe------- 258 (802)
T KOG0733|consen 187 VSFSDIGGLDKTLAELCELIIH-IKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPE------- 258 (802)
T ss_pred cchhhccChHHHHHHHHHHHHH-hcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchh-------
Confidence 3699999999999999998876 43332 7777899999999999999999999999999999999986
Q ss_pred hhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchh-----H-HHHHHHHHHHHHhc---
Q 009072 221 MHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRT-----A-FERLRQCLLLLVRS--- 291 (544)
Q Consensus 221 l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~-----~-~~~~~~~L~~~~~~--- 291 (544)
+-.|+. ..+.+.++++++++..++ |+|+||||||.+.... . -+|+...|+..++.
T Consensus 259 ---ivSGvS-GESEkkiRelF~~A~~~a------------PcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~ 322 (802)
T KOG0733|consen 259 ---IVSGVS-GESEKKIRELFDQAKSNA------------PCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSN 322 (802)
T ss_pred ---hhcccC-cccHHHHHHHHHHHhccC------------CeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccc
Confidence 233432 345688999999987654 9999999999986532 1 22343333333332
Q ss_pred --C-CCcEEEEEccCCCCCCCCccccchHHHHHHHhhcC--ceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 009072 292 --T-HIPTAVVLTECGKADSVDSTAQSFEELQSILVDAG--ARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQ 366 (544)
Q Consensus 292 --~-~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~--~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~l~~Ia~ 366 (544)
. ..|+++|.++ +..+.. .+.|+|.+ ...|.+.-|+.+...++|+.+|+...+.- +-....||.
T Consensus 323 ~~~~g~~VlVIgAT-nRPDsl----------DpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g-~~d~~qlA~ 390 (802)
T KOG0733|consen 323 EKTKGDPVLVIGAT-NRPDSL----------DPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSG-DFDFKQLAK 390 (802)
T ss_pred cccCCCCeEEEecC-CCCccc----------CHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCC-CcCHHHHHh
Confidence 1 2366665544 433333 33344322 45789999999999999999998655433 344777888
Q ss_pred HcCCcHHHHHHHH
Q 009072 367 ASGGDIRQAITSL 379 (544)
Q Consensus 367 ~s~GDiR~aIn~L 379 (544)
.+.|-+..-+..|
T Consensus 391 lTPGfVGADL~AL 403 (802)
T KOG0733|consen 391 LTPGFVGADLMAL 403 (802)
T ss_pred cCCCccchhHHHH
Confidence 8877554444443
No 62
>PRK04132 replication factor C small subunit; Provisional
Probab=99.77 E-value=7.4e-18 Score=188.00 Aligned_cols=227 Identities=16% Similarity=0.196 Sum_probs=160.0
Q ss_pred cEEEEEc--CCCCcHHHHHHHHHHHh-----CCeEEEEeCCCchhhhhhhhccccCcccccchHHHHHHHHHHHhhcCCC
Q 009072 179 NVLVITG--QAGVGKTATVRQIASHL-----GARLYEWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTS 251 (544)
Q Consensus 179 ~~lLL~G--PpG~GKTtla~~lA~el-----g~~viei~~s~~~~~~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~ 251 (544)
-+-+..| |.++||||+|+++|+++ +.+++|+|+++.+ |+ +.+++.+..+..+..+.
T Consensus 565 ~~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~r-----------gi------d~IR~iIk~~a~~~~~~ 627 (846)
T PRK04132 565 YHNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDER-----------GI------NVIREKVKEFARTKPIG 627 (846)
T ss_pred hhhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcc-----------cH------HHHHHHHHHHHhcCCcC
Confidence 4566779 99999999999999998 5689999998732 32 45677776655443221
Q ss_pred CCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHHHHHhcC--CCcEEEEEccCCCCCCCCccccchHHHHHHHhhcCce
Q 009072 252 PSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRST--HIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGAR 329 (544)
Q Consensus 252 ~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~~~~~~--~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~ 329 (544)
..+.+|+||||+|.++.. .+++|++.++.. ..+.|++|++. ...++++.+| |+
T Consensus 628 ------~~~~KVvIIDEaD~Lt~~-----AQnALLk~lEep~~~~~FILi~N~~------------~kIi~tIrSR--C~ 682 (846)
T PRK04132 628 ------GASFKIIFLDEADALTQD-----AQQALRRTMEMFSSNVRFILSCNYS------------SKIIEPIQSR--CA 682 (846)
T ss_pred ------CCCCEEEEEECcccCCHH-----HHHHHHHHhhCCCCCeEEEEEeCCh------------hhCchHHhhh--ce
Confidence 124689999999999753 356788888863 34455555431 1223455554 99
Q ss_pred eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHhccCCCCCccccccCCCCCCCCccCCCC
Q 009072 330 KVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIRQAITSLQFSSLKQDPMLNLSLSISKPNFPEEKADGH 409 (544)
Q Consensus 330 ~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~l~~Ia~~s~GDiR~aIn~Lq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (544)
.+.|.|++.+++..+|.++|.+|++.++++++..|+..|+||+|.|||.||.++....... .
T Consensus 683 ~i~F~~ls~~~i~~~L~~I~~~Egi~i~~e~L~~Ia~~s~GDlR~AIn~Lq~~~~~~~~It------------------~ 744 (846)
T PRK04132 683 IFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAAALDDKIT------------------D 744 (846)
T ss_pred EEeCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC------------------H
Confidence 9999999999999999999999999999999999999999999999999999876432211 1
Q ss_pred CCccccccccccchhhHhhhhhhccccCCCccccCCccccccccccccCCCCCCChHHHHHhcCCChHHHHHHHHhcC
Q 009072 410 GGFSIQFGRDETLSLFHALGKFLHNKRETDNLVKMDQDAFVVKDKFSRLPLKMDAPEKVLSQAHGQARPVLDFLHENC 487 (544)
Q Consensus 410 ~~~~~~~~rD~~l~lF~algkil~~Kr~~~~~~~~~~~~~~~~~~~~r~pl~~~~pe~v~~~~~~~~~~~~~~LheNy 487 (544)
+....+.+++....++..+..++.++-... | ....+++...+.+++.++.-+++..
T Consensus 745 ~~V~~~~~~~~~~~I~~il~~~l~~~~~~a-----------------r-----~~l~ell~~~G~~~~~iL~~l~~~l 800 (846)
T PRK04132 745 ENVFLVASRARPEDIREMMLLALKGNFLKA-----------------R-----EKLREILLKQGLSGEDVLVQMHREV 800 (846)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHhcCcHHHH-----------------H-----HHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 111223455555578888887775431100 0 0112345567778888887777776
No 63
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.75 E-value=5e-17 Score=165.59 Aligned_cols=188 Identities=18% Similarity=0.191 Sum_probs=131.1
Q ss_pred CCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCCchhhhhhhhccc
Q 009072 146 RSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIWQEYMHNCK 225 (544)
Q Consensus 146 ~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~~~~~~e~l~~~~ 225 (544)
++|+|++|+++.+++|..|+...... ....++++|+||||||||++|+++|++++..+.....+..
T Consensus 1 ~~~~~~iG~~~~~~~l~~~l~~~~~~---~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~----------- 66 (305)
T TIGR00635 1 KLLAEFIGQEKVKEQLQLFIEAAKMR---QEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPAL----------- 66 (305)
T ss_pred CCHHHHcCHHHHHHHHHHHHHHHHhc---CCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchh-----------
Confidence 47899999999999999999865432 1122679999999999999999999999987665543210
Q ss_pred cCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHHHHHhcCC------------
Q 009072 226 TGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTH------------ 293 (544)
Q Consensus 226 ~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~~~~~~~------------ 293 (544)
. ....+..++... ..+.+|+|||++.+.... .+.|..+++...
T Consensus 67 ~------~~~~l~~~l~~~--------------~~~~vl~iDEi~~l~~~~-----~e~l~~~~~~~~~~~v~~~~~~~~ 121 (305)
T TIGR00635 67 E------KPGDLAAILTNL--------------EEGDVLFIDEIHRLSPAV-----EELLYPAMEDFRLDIVIGKGPSAR 121 (305)
T ss_pred c------CchhHHHHHHhc--------------ccCCEEEEehHhhhCHHH-----HHHhhHHHhhhheeeeeccCcccc
Confidence 0 012223333221 235699999999987532 223333333221
Q ss_pred ------CcEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 009072 294 ------IPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQA 367 (544)
Q Consensus 294 ------~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~l~~Ia~~ 367 (544)
.|.++|.+++.. ..+ ..++.+|+ ...+.|.+++.+++.++|.+.+...++.+++++++.|++.
T Consensus 122 ~~~~~~~~~~li~~t~~~--------~~l--~~~l~sR~-~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~ 190 (305)
T TIGR00635 122 SVRLDLPPFTLVGATTRA--------GML--TSPLRDRF-GIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARR 190 (305)
T ss_pred ceeecCCCeEEEEecCCc--------ccc--CHHHHhhc-ceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHH
Confidence 233444333211 111 13455553 4578999999999999999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHhc
Q 009072 368 SGGDIRQAITSLQFSS 383 (544)
Q Consensus 368 s~GDiR~aIn~Lq~~~ 383 (544)
++||+|.+++.+..+.
T Consensus 191 ~~G~pR~~~~ll~~~~ 206 (305)
T TIGR00635 191 SRGTPRIANRLLRRVR 206 (305)
T ss_pred hCCCcchHHHHHHHHH
Confidence 9999999998887643
No 64
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.75 E-value=1.7e-17 Score=156.79 Aligned_cols=194 Identities=15% Similarity=0.187 Sum_probs=133.0
Q ss_pred ccccCCCCcchhccChHHHHHHHHHHHHhhcCCC--CCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCCchhh
Q 009072 140 AEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSK--DKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIW 217 (544)
Q Consensus 140 ~eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~--g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~~~~~ 217 (544)
.+..+-.+++|++|++..++.-+- +.+.+..++ |...++++|||||||||||++|+++|++...+++.+++... .
T Consensus 112 ~e~~~~it~ddViGqEeAK~kcrl-i~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~l~vkat~l--i 188 (368)
T COG1223 112 REIISDITLDDVIGQEEAKRKCRL-IMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATEL--I 188 (368)
T ss_pred hhhhccccHhhhhchHHHHHHHHH-HHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCceEEechHHH--H
Confidence 355666799999999977765432 222333222 55556999999999999999999999999999999988641 1
Q ss_pred hhhhhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCch-------hHHHHHHHHHHHHHh
Q 009072 218 QEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGR-------TAFERLRQCLLLLVR 290 (544)
Q Consensus 218 ~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~-------~~~~~~~~~L~~~~~ 290 (544)
.++ .......+.+..+++++.+ |||+||||+|.+.-. ++...+.++|+.-++
T Consensus 189 Geh---------VGdgar~Ihely~rA~~~a------------PcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelD 247 (368)
T COG1223 189 GEH---------VGDGARRIHELYERARKAA------------PCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELD 247 (368)
T ss_pred HHH---------hhhHHHHHHHHHHHHHhcC------------CeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhcc
Confidence 121 2223367888888887664 999999999987432 123334455554333
Q ss_pred cCC--CcEEEEEccCCCCCCCCccccchHHH-HHHHhhcCceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 009072 291 STH--IPTAVVLTECGKADSVDSTAQSFEEL-QSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQA 367 (544)
Q Consensus 291 ~~~--~piIiI~t~~~~~~~~d~~~~~l~~l-~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~l~~Ia~~ 367 (544)
... --++.|++++. .+.| .++.+|+ -..|.|..|+.++...+|...++...++++.. ++.++..
T Consensus 248 gi~eneGVvtIaaTN~-----------p~~LD~aiRsRF-EeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~-~~~~~~~ 314 (368)
T COG1223 248 GIKENEGVVTIAATNR-----------PELLDPAIRSRF-EEEIEFKLPNDEERLEILEYYAKKFPLPVDAD-LRYLAAK 314 (368)
T ss_pred CcccCCceEEEeecCC-----------hhhcCHHHHhhh-hheeeeeCCChHHHHHHHHHHHHhCCCccccC-HHHHHHH
Confidence 222 23566665432 1222 3444454 67899999999999999999999887777655 7777777
Q ss_pred cCC
Q 009072 368 SGG 370 (544)
Q Consensus 368 s~G 370 (544)
+.|
T Consensus 315 t~g 317 (368)
T COG1223 315 TKG 317 (368)
T ss_pred hCC
Confidence 544
No 65
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.73 E-value=1.3e-16 Score=153.19 Aligned_cols=193 Identities=17% Similarity=0.231 Sum_probs=138.4
Q ss_pred ccccCCCCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCCchhhhh
Q 009072 140 AEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIWQE 219 (544)
Q Consensus 140 ~eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~~~~~~e 219 (544)
-...||++++|++|+++.++++.-+++..... +... .++||+||||.||||+|+.+|+|+|..+-...+|-.
T Consensus 17 e~~lRP~~l~efiGQ~~vk~~L~ifI~AAk~r--~e~l-DHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~l----- 88 (332)
T COG2255 17 ERSLRPKTLDEFIGQEKVKEQLQIFIKAAKKR--GEAL-DHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPAL----- 88 (332)
T ss_pred hcccCcccHHHhcChHHHHHHHHHHHHHHHhc--CCCc-CeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccc-----
Confidence 34678999999999999999999999887653 3333 799999999999999999999999998765544421
Q ss_pred hhhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHHHHHhcCCC-----
Q 009072 220 YMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHI----- 294 (544)
Q Consensus 220 ~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~~~~~~~~----- 294 (544)
.....+..++..+ ....|+|||||+.++.. .. +.|-..++....
T Consensus 89 ------------eK~gDlaaiLt~L--------------e~~DVLFIDEIHrl~~~--vE---E~LYpaMEDf~lDI~IG 137 (332)
T COG2255 89 ------------EKPGDLAAILTNL--------------EEGDVLFIDEIHRLSPA--VE---EVLYPAMEDFRLDIIIG 137 (332)
T ss_pred ------------cChhhHHHHHhcC--------------CcCCeEEEehhhhcChh--HH---HHhhhhhhheeEEEEEc
Confidence 1112233333221 34569999999998652 12 333333333211
Q ss_pred -------------cEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHH
Q 009072 295 -------------PTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQI 361 (544)
Q Consensus 295 -------------piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~l 361 (544)
|.-+|-+++-.+ .+ -.++..|+ ....+++-++.+++..++.+-+...++.++++..
T Consensus 138 ~gp~Arsv~ldLppFTLIGATTr~G--------~l--t~PLrdRF-Gi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a 206 (332)
T COG2255 138 KGPAARSIRLDLPPFTLIGATTRAG--------ML--TNPLRDRF-GIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAA 206 (332)
T ss_pred cCCccceEeccCCCeeEeeeccccc--------cc--cchhHHhc-CCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHH
Confidence 333333332111 11 13444566 4478899999999999999999999999999999
Q ss_pred HHHHHHcCCcHHHHHHHHHHh
Q 009072 362 DLVAQASGGDIRQAITSLQFS 382 (544)
Q Consensus 362 ~~Ia~~s~GDiR~aIn~Lq~~ 382 (544)
..||..|.|-.|-|.+.|...
T Consensus 207 ~eIA~rSRGTPRIAnRLLrRV 227 (332)
T COG2255 207 LEIARRSRGTPRIANRLLRRV 227 (332)
T ss_pred HHHHHhccCCcHHHHHHHHHH
Confidence 999999999999999988543
No 66
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.73 E-value=2.1e-16 Score=172.04 Aligned_cols=223 Identities=17% Similarity=0.237 Sum_probs=141.8
Q ss_pred CCcccccCCCCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHh----------CCeE
Q 009072 137 QLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL----------GARL 206 (544)
Q Consensus 137 ~lW~eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~el----------g~~v 206 (544)
..+-..|.| +.|.++++.+++|..+|...+. |..+...|+|+||||||||++++.+++++ .+.+
T Consensus 746 rvL~~DYVP---D~LPhREeEIeeLasfL~paIk---gsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~v 819 (1164)
T PTZ00112 746 RMMQLDVVP---KYLPCREKEIKEVHGFLESGIK---QSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNV 819 (1164)
T ss_pred HHcCcccCC---CcCCChHHHHHHHHHHHHHHHh---cCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceE
Confidence 445566888 4679999999999999998876 33343567899999999999999998876 2678
Q ss_pred EEEeCCCch---h-hhhhhhccccCcc--cccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHH
Q 009072 207 YEWDTPTPT---I-WQEYMHNCKTGLE--YTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFER 280 (544)
Q Consensus 207 iei~~s~~~---~-~~e~l~~~~~g~~--~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~ 280 (544)
+++|+.... . +......+..... ..+....+..++..+... .....||||||||.+..... .-
T Consensus 820 VYINCm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~----------~r~v~IIILDEID~L~kK~Q-DV 888 (1164)
T PTZ00112 820 FEINGMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKD----------NRNVSILIIDEIDYLITKTQ-KV 888 (1164)
T ss_pred EEEeCCccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcc----------cccceEEEeehHhhhCccHH-HH
Confidence 899985422 1 1111111111111 012223444444433211 13356999999999865321 11
Q ss_pred HHHHHHHHHhcCCCcEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHH
Q 009072 281 LRQCLLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQ 360 (544)
Q Consensus 281 ~~~~L~~~~~~~~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~ 360 (544)
+.+ |..+.......+++|+... .. +. ....++.+.+|++...|.|+|++.+++..+|..++......+++++
T Consensus 889 LYn-LFR~~~~s~SKLiLIGISN-dl---DL---perLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdA 960 (1164)
T PTZ00112 889 LFT-LFDWPTKINSKLVLIAISN-TM---DL---PERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTA 960 (1164)
T ss_pred HHH-HHHHhhccCCeEEEEEecC-ch---hc---chhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHH
Confidence 222 2222222223334333221 10 11 1111234445555567999999999999999999986555689999
Q ss_pred HHHHHH---HcCCcHHHHHHHHHHhcc
Q 009072 361 IDLVAQ---ASGGDIRQAITSLQFSSL 384 (544)
Q Consensus 361 l~~Ia~---~s~GDiR~aIn~Lq~~~~ 384 (544)
++.+|+ ..+||+|.||+.|..+..
T Consensus 961 IELIArkVAq~SGDARKALDILRrAgE 987 (1164)
T PTZ00112 961 IQLCARKVANVSGDIRKALQICRKAFE 987 (1164)
T ss_pred HHHHHHhhhhcCCHHHHHHHHHHHHHh
Confidence 999998 678999999999988764
No 67
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.72 E-value=4.3e-16 Score=160.28 Aligned_cols=206 Identities=17% Similarity=0.297 Sum_probs=135.4
Q ss_pred ccCCCCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeE------EEEeCCC-c
Q 009072 142 KYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARL------YEWDTPT-P 214 (544)
Q Consensus 142 ky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~v------iei~~s~-~ 214 (544)
...|+.+.+|+||+...+.+...+.. |+.+ +.+||+||+|+||||+|+.+|+.+.+.- .....+. .
T Consensus 16 ~~~P~~~~~l~Gh~~a~~~L~~a~~~------grl~-ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~ 88 (351)
T PRK09112 16 VPSPSENTRLFGHEEAEAFLAQAYRE------GKLH-HALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPA 88 (351)
T ss_pred CCCCCchhhccCcHHHHHHHHHHHHc------CCCC-eeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCC
Confidence 47899999999999999999988876 6665 7899999999999999999999986621 1111111 1
Q ss_pred h-hhhhhhhc-------ccc------Cc-ccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHH
Q 009072 215 T-IWQEYMHN-------CKT------GL-EYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFE 279 (544)
Q Consensus 215 ~-~~~e~l~~-------~~~------g~-~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~ 279 (544)
+ .+...... ... +. ...-..+.++.+.+.....+ ..+..+|+||||+|.++...
T Consensus 89 c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~--------~~g~~rVviIDeAd~l~~~a--- 157 (351)
T PRK09112 89 SPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTS--------GDGNWRIVIIDPADDMNRNA--- 157 (351)
T ss_pred CHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhcc--------ccCCceEEEEEchhhcCHHH---
Confidence 1 11111000 000 00 00112344444443332111 12456799999999997542
Q ss_pred HHHHHHHHHHhcCCC-cEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHHhCCCCCH
Q 009072 280 RLRQCLLLLVRSTHI-PTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLST 358 (544)
Q Consensus 280 ~~~~~L~~~~~~~~~-piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~ 358 (544)
.++|++.+++.+. .+++++++.. . ..++++.+ ||..++|.|++.+++..+|...+...+ +++
T Consensus 158 --anaLLk~LEEpp~~~~fiLit~~~--------~---~llptIrS--Rc~~i~l~pl~~~~~~~~L~~~~~~~~--~~~ 220 (351)
T PRK09112 158 --ANAILKTLEEPPARALFILISHSS--------G---RLLPTIRS--RCQPISLKPLDDDELKKALSHLGSSQG--SDG 220 (351)
T ss_pred --HHHHHHHHhcCCCCceEEEEECCh--------h---hccHHHHh--hccEEEecCCCHHHHHHHHHHhhcccC--CCH
Confidence 3567777777543 3444444311 1 11344444 489999999999999999998654433 778
Q ss_pred HHHHHHHHHcCCcHHHHHHHHHHh
Q 009072 359 EQIDLVAQASGGDIRQAITSLQFS 382 (544)
Q Consensus 359 ~~l~~Ia~~s~GDiR~aIn~Lq~~ 382 (544)
+.+..|+..++|++|.|++.|+.-
T Consensus 221 ~~~~~i~~~s~G~pr~Al~ll~~~ 244 (351)
T PRK09112 221 EITEALLQRSKGSVRKALLLLNYG 244 (351)
T ss_pred HHHHHHHHHcCCCHHHHHHHHhcC
Confidence 999999999999999999988643
No 68
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.72 E-value=2.4e-16 Score=164.28 Aligned_cols=202 Identities=21% Similarity=0.213 Sum_probs=131.4
Q ss_pred CcchhccChHHHHHHHHHHHHhhcCCC--CCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCCc-h-hhhhhhh
Q 009072 147 SLEELAVQRKKVEEVRAWFEERLGDSK--DKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTP-T-IWQEYMH 222 (544)
Q Consensus 147 ~~~dLv~~~~~~~~l~~wL~~~~~~~~--g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~~-~-~~~e~l~ 222 (544)
.|++++|++..++.|++++........ +...++.+||+||||+|||++|+.+|+.+.+.-.. ..++. + .......
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~-~~~Cg~C~~C~~~~~ 81 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPD-EPGCGECRACRTVLA 81 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCC-CCCCCCCHHHHHHhc
Confidence 578999999999999999987532100 11123789999999999999999999998764211 11110 0 0000000
Q ss_pred ccccC------cccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHHHHHhcCCCcE
Q 009072 223 NCKTG------LEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPT 296 (544)
Q Consensus 223 ~~~~g------~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~~~~~~~~pi 296 (544)
..... -+..-..+.++++++.+...+ ..++++|+||||+|.+.... .+.|++.++..+...
T Consensus 82 ~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p--------~~~~~kViiIDead~m~~~a-----anaLLk~LEep~~~~ 148 (394)
T PRK07940 82 GTHPDVRVVAPEGLSIGVDEVRELVTIAARRP--------STGRWRIVVIEDADRLTERA-----ANALLKAVEEPPPRT 148 (394)
T ss_pred CCCCCEEEeccccccCCHHHHHHHHHHHHhCc--------ccCCcEEEEEechhhcCHHH-----HHHHHHHhhcCCCCC
Confidence 00000 001123466777777664332 12457899999999997542 366888888866555
Q ss_pred EEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHH
Q 009072 297 AVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIRQAI 376 (544)
Q Consensus 297 IiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~l~~Ia~~s~GDiR~aI 376 (544)
+||+++++ ....++++.+| |..+.|.+|+.+++..+|.+ ..+ ++++.+..++..++|+++.|+
T Consensus 149 ~fIL~a~~----------~~~llpTIrSR--c~~i~f~~~~~~~i~~~L~~---~~~--~~~~~a~~la~~s~G~~~~A~ 211 (394)
T PRK07940 149 VWLLCAPS----------PEDVLPTIRSR--CRHVALRTPSVEAVAEVLVR---RDG--VDPETARRAARASQGHIGRAR 211 (394)
T ss_pred eEEEEECC----------hHHChHHHHhh--CeEEECCCCCHHHHHHHHHH---hcC--CCHHHHHHHHHHcCCCHHHHH
Confidence 55554422 11223455554 99999999999999988873 223 678889999999999999887
Q ss_pred HHH
Q 009072 377 TSL 379 (544)
Q Consensus 377 n~L 379 (544)
..+
T Consensus 212 ~l~ 214 (394)
T PRK07940 212 RLA 214 (394)
T ss_pred HHh
Confidence 654
No 69
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.71 E-value=5.3e-16 Score=154.42 Aligned_cols=207 Identities=11% Similarity=0.128 Sum_probs=132.5
Q ss_pred CcchhccChHHHHHHHHHHH---Hhhc-CCCCC---CCccEEEEEcCCCCcHHHHHHHHHHHhC-------CeEEEEeCC
Q 009072 147 SLEELAVQRKKVEEVRAWFE---ERLG-DSKDK---FSTNVLVITGQAGVGKTATVRQIASHLG-------ARLYEWDTP 212 (544)
Q Consensus 147 ~~~dLv~~~~~~~~l~~wL~---~~~~-~~~g~---~~~~~lLL~GPpG~GKTtla~~lA~elg-------~~viei~~s 212 (544)
.+++|+|.+.++++|++++. .... ...|. +...++||+|||||||||+|+++|+++. ..++++..+
T Consensus 4 ~l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~ 83 (261)
T TIGR02881 4 ELSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA 83 (261)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH
Confidence 46789999888877775542 2111 00121 2225799999999999999999999852 245555443
Q ss_pred CchhhhhhhhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchh--HH-HHHHHHHHHHH
Q 009072 213 TPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRT--AF-ERLRQCLLLLV 289 (544)
Q Consensus 213 ~~~~~~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~--~~-~~~~~~L~~~~ 289 (544)
+. .+.........+.+++..+ .+.||||||++.+.... .+ ...++.|...+
T Consensus 84 ~l-----------~~~~~g~~~~~~~~~~~~a---------------~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~ 137 (261)
T TIGR02881 84 DL-----------VGEYIGHTAQKTREVIKKA---------------LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGM 137 (261)
T ss_pred Hh-----------hhhhccchHHHHHHHHHhc---------------cCCEEEEechhhhccCCccchHHHHHHHHHHHH
Confidence 31 1111112223344455432 13599999999875311 11 23446677777
Q ss_pred hcCCCcEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH--
Q 009072 290 RSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQA-- 367 (544)
Q Consensus 290 ~~~~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~l~~Ia~~-- 367 (544)
+..+.++++|++++.. ..+ ..+...+++.+|+ ...|.|++++.+++.+++++++...+..++++++..|++.
T Consensus 138 e~~~~~~~vila~~~~--~~~---~~~~~~p~L~sRf-~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~ 211 (261)
T TIGR02881 138 EDNRNEFVLILAGYSD--EMD---YFLSLNPGLRSRF-PISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLY 211 (261)
T ss_pred hccCCCEEEEecCCcc--hhH---HHHhcChHHHhcc-ceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHH
Confidence 7766666666654321 001 1111124555654 4679999999999999999999998899999999888654
Q ss_pred --------cCCcHHHHHHHHHHhccC
Q 009072 368 --------SGGDIRQAITSLQFSSLK 385 (544)
Q Consensus 368 --------s~GDiR~aIn~Lq~~~~~ 385 (544)
+.||.|.+.|.++.+..+
T Consensus 212 ~~~~~~~~~~gn~R~~~n~~e~a~~~ 237 (261)
T TIGR02881 212 KVDQLSSREFSNARYVRNIIEKAIRR 237 (261)
T ss_pred HHHhccCCCCchHHHHHHHHHHHHHH
Confidence 369999999999987643
No 70
>PRK06893 DNA replication initiation factor; Validated
Probab=99.71 E-value=7.4e-16 Score=150.21 Aligned_cols=194 Identities=14% Similarity=0.174 Sum_probs=122.3
Q ss_pred CCCCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeCCCchhhhhh
Q 009072 144 KPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTPTPTIWQEY 220 (544)
Q Consensus 144 ~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~el---g~~viei~~s~~~~~~e~ 220 (544)
++.+|+++++.+.. ..+..+.+.+. .. ..+.++|+||||||||++++++|+++ +..+..+.....
T Consensus 11 ~~~~fd~f~~~~~~-~~~~~~~~~~~----~~-~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~------ 78 (229)
T PRK06893 11 DDETLDNFYADNNL-LLLDSLRKNFI----DL-QQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKS------ 78 (229)
T ss_pred CcccccccccCChH-HHHHHHHHHhh----cc-CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHh------
Confidence 35788998877643 23333333332 11 22578999999999999999999986 333333322100
Q ss_pred hhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHH-HHHHHHHHHHhcCCCcEEEE
Q 009072 221 MHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFE-RLRQCLLLLVRSTHIPTAVV 299 (544)
Q Consensus 221 l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~-~~~~~L~~~~~~~~~piIiI 299 (544)
. ....++++.. .+..+|+|||++.+.+..... .+.+.+....+. ..+++++
T Consensus 79 -------~------~~~~~~~~~~--------------~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~-~~~illi 130 (229)
T PRK06893 79 -------Q------YFSPAVLENL--------------EQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQ-GKTLLLI 130 (229)
T ss_pred -------h------hhhHHHHhhc--------------ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHc-CCcEEEE
Confidence 0 0001222221 234599999999876543222 233444444433 3345555
Q ss_pred EccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHH
Q 009072 300 LTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIRQAITSL 379 (544)
Q Consensus 300 ~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~l~~Ia~~s~GDiR~aIn~L 379 (544)
.++..+... ...+..+.+.+.. ...+.+++|+.+++.++|++.+..+++.+++++++.|++.+.||+|.+++.|
T Consensus 131 ts~~~p~~l----~~~~~~L~sRl~~--g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~~~v~~~L~~~~~~d~r~l~~~l 204 (229)
T PRK06893 131 SADCSPHAL----SIKLPDLASRLTW--GEIYQLNDLTDEQKIIVLQRNAYQRGIELSDEVANFLLKRLDRDMHTLFDAL 204 (229)
T ss_pred eCCCChHHc----cccchhHHHHHhc--CCeeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHHHHHHH
Confidence 555332111 1112233333222 4588999999999999999999999999999999999999999999999999
Q ss_pred HHhc
Q 009072 380 QFSS 383 (544)
Q Consensus 380 q~~~ 383 (544)
+.+.
T Consensus 205 ~~l~ 208 (229)
T PRK06893 205 DLLD 208 (229)
T ss_pred HHHH
Confidence 8763
No 71
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=1.8e-16 Score=162.56 Aligned_cols=279 Identities=14% Similarity=0.171 Sum_probs=174.3
Q ss_pred cccccccccccccccccCCccCcccccccccccccccccc-------CCCCCChhhhhhhhhhhhhccCcccccCCCCCC
Q 009072 53 PDVQKKNVEHFLTPSRFEGLVNPKRDLALGSSSRQQLWTN-------KNKPCSLEEHAIQKENVGRFLTPSRFEGLVNPD 125 (544)
Q Consensus 53 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~i~~~~ed~~~~l~~~~i~~~~~~~ 125 (544)
+.++..|||+.++|++||||+||+++++++||+++++-++ .-.+...++++++++||..+|. .| .++++
T Consensus 420 ~~~l~~dVdl~elA~lTKNfSGAEleglVksA~S~A~nR~vk~~~~~~~~~~~~e~lkV~r~DFl~aL~--dV--kPAFG 495 (744)
T KOG0741|consen 420 NNKLSADVDLKELAALTKNFSGAELEGLVKSAQSFAMNRHVKAGGKVEVDPVAIENLKVTRGDFLNALE--DV--KPAFG 495 (744)
T ss_pred cCCCCCCcCHHHHHHHhcCCchhHHHHHHHHHHHHHHHhhhccCcceecCchhhhheeecHHHHHHHHH--hc--CcccC
Confidence 6677778999999999999999999999999999997211 1225667889999999999999 77 55665
Q ss_pred CCCCCcCCCCCCCcccccCCCCcchhcc-ChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhCC
Q 009072 126 HDSASASSSTQQLWAEKYKPRSLEELAV-QRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGA 204 (544)
Q Consensus 126 ~~~~~~~~~~~~lW~eky~P~~~~dLv~-~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg~ 204 (544)
.+... .++|.-..+-...- ..+.+++=..+++. .+.+. +.+-..+||.||||+|||++|-.+|...++
T Consensus 496 ~see~---------l~~~~~~Gmi~~g~~v~~il~~G~llv~q-vk~s~-~s~lvSvLl~Gp~~sGKTaLAA~iA~~S~F 564 (744)
T KOG0741|consen 496 ISEED---------LERFVMNGMINWGPPVTRILDDGKLLVQQ-VKNSE-RSPLVSVLLEGPPGSGKTALAAKIALSSDF 564 (744)
T ss_pred CCHHH---------HHHHHhCCceeecccHHHHHhhHHHHHHH-hhccc-cCcceEEEEecCCCCChHHHHHHHHhhcCC
Confidence 54433 23332222111110 01122222223332 33222 223378999999999999999999999999
Q ss_pred eEEEEeCCCchhhhhhhhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCc-----hhHHH
Q 009072 205 RLYEWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNG-----RTAFE 279 (544)
Q Consensus 205 ~viei~~s~~~~~~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~-----~~~~~ 279 (544)
+++.+..|+. ..|+........+...++.+-+ ++-.||++|++.++-. ..--+
T Consensus 565 PFvKiiSpe~----------miG~sEsaKc~~i~k~F~DAYk------------S~lsiivvDdiErLiD~vpIGPRfSN 622 (744)
T KOG0741|consen 565 PFVKIISPED----------MIGLSESAKCAHIKKIFEDAYK------------SPLSIIVVDDIERLLDYVPIGPRFSN 622 (744)
T ss_pred CeEEEeChHH----------ccCccHHHHHHHHHHHHHHhhc------------CcceEEEEcchhhhhcccccCchhhH
Confidence 9999998763 3455545556677888887632 2346999999987621 11112
Q ss_pred HHHHHHHHHHhcCCC---cEEEEEccCCCCCCCCccccchHHHHH--HHhhcCceeEEecCCCH-HHHHHHHHHHHHHhC
Q 009072 280 RLRQCLLLLVRSTHI---PTAVVLTECGKADSVDSTAQSFEELQS--ILVDAGARKVALNPITN-GSIKRTLSKICRQEQ 353 (544)
Q Consensus 280 ~~~~~L~~~~~~~~~---piIiI~t~~~~~~~~d~~~~~l~~l~~--ll~r~~~~~I~f~p~s~-~~i~~~L~~i~~~e~ 353 (544)
-+.++|.-+++..+. .+++++|+. ...-++. ++.-+ ...++.+.++. +++.++|...
T Consensus 623 ~vlQaL~VllK~~ppkg~kLli~~TTS-----------~~~vL~~m~i~~~F-~~~i~Vpnl~~~~~~~~vl~~~----- 685 (744)
T KOG0741|consen 623 LVLQALLVLLKKQPPKGRKLLIFGTTS-----------RREVLQEMGILDCF-SSTIHVPNLTTGEQLLEVLEEL----- 685 (744)
T ss_pred HHHHHHHHHhccCCCCCceEEEEeccc-----------HHHHHHHcCHHHhh-hheeecCccCchHHHHHHHHHc-----
Confidence 344666666665332 244444442 1111211 22222 34677777765 6666666542
Q ss_pred CCCCHHHHHHHHHHcCC-----cHHHHHHHHHHhccC
Q 009072 354 YSLSTEQIDLVAQASGG-----DIRQAITSLQFSSLK 385 (544)
Q Consensus 354 ~~i~~~~l~~Ia~~s~G-----DiR~aIn~Lq~~~~~ 385 (544)
-.++++....+++.-.+ -|.+.+..+++....
T Consensus 686 n~fsd~~~~~~~~~~~~~~~~vgIKklL~lie~a~q~ 722 (744)
T KOG0741|consen 686 NIFSDDEVRAIAEQLLSKKVNVGIKKLLMLIEMARQD 722 (744)
T ss_pred cCCCcchhHHHHHHHhccccchhHHHHHHHHHHHhcc
Confidence 22456666666655433 377777777776543
No 72
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.70 E-value=5.8e-17 Score=183.42 Aligned_cols=275 Identities=15% Similarity=0.154 Sum_probs=175.8
Q ss_pred cccccccccccccCCccCccccccccccccccccccCC--C------CC---ChhhhhhhhhhhhhccCcccccCCCCCC
Q 009072 57 KKNVEHFLTPSRFEGLVNPKRDLALGSSSRQQLWTNKN--K------PC---SLEEHAIQKENVGRFLTPSRFEGLVNPD 125 (544)
Q Consensus 57 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~------~~---~~~~i~~~~ed~~~~l~~~~i~~~~~~~ 125 (544)
..+++...++..|+||+|++.+.++..+...++-.... + .. ......++++||..++. .+...
T Consensus 365 ~~d~~l~~la~~t~G~~gadl~~l~~~a~~~al~r~~~~~~~~~~~~~i~~~~~~~~~v~~~df~~Al~--~v~ps---- 438 (733)
T TIGR01243 365 AEDVDLDKLAEVTHGFVGADLAALAKEAAMAALRRFIREGKINFEAEEIPAEVLKELKVTMKDFMEALK--MVEPS---- 438 (733)
T ss_pred ccccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhccccccccccccchhcccccccHHHHHHHHh--hcccc----
Confidence 34678888999999999999999888877665311100 0 00 01234566777777766 33110
Q ss_pred CCCCCcCCCCCCCcccccCCCCcchhccChHHHHHHHHHHHHhhcCCC-----CCCCccEEEEEcCCCCcHHHHHHHHHH
Q 009072 126 HDSASASSSTQQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSK-----DKFSTNVLVITGQAGVGKTATVRQIAS 200 (544)
Q Consensus 126 ~~~~~~~~~~~~lW~eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~-----g~~~~~~lLL~GPpG~GKTtla~~lA~ 200 (544)
.. ... ....+..++++++|.+..+++|++++..+...+. |..+++.+||+||||||||++|+++|+
T Consensus 439 ~~--------~~~-~~~~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~ 509 (733)
T TIGR01243 439 AI--------REV-LVEVPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVAT 509 (733)
T ss_pred cc--------chh-hccccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 00 001 1223456899999999999999998875544321 444558899999999999999999999
Q ss_pred HhCCeEEEEeCCCchhhhhhhhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCch-----
Q 009072 201 HLGARLYEWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGR----- 275 (544)
Q Consensus 201 elg~~viei~~s~~~~~~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~----- 275 (544)
+++.+++.+..++.. +.........++.++..+... .|+||||||+|.+...
T Consensus 510 e~~~~fi~v~~~~l~-----------~~~vGese~~i~~~f~~A~~~------------~p~iifiDEid~l~~~r~~~~ 566 (733)
T TIGR01243 510 ESGANFIAVRGPEIL-----------SKWVGESEKAIREIFRKARQA------------APAIIFFDEIDAIAPARGARF 566 (733)
T ss_pred hcCCCEEEEehHHHh-----------hcccCcHHHHHHHHHHHHHhc------------CCEEEEEEChhhhhccCCCCC
Confidence 999999999876521 111223345678888877643 4899999999987321
Q ss_pred --hHHHHHHHHHHHHHhc--CCCcEEEEEccCCCCCCCCccccchHHH-HHHHh--hcCceeEEecCCCHHHHHHHHHHH
Q 009072 276 --TAFERLRQCLLLLVRS--THIPTAVVLTECGKADSVDSTAQSFEEL-QSILV--DAGARKVALNPITNGSIKRTLSKI 348 (544)
Q Consensus 276 --~~~~~~~~~L~~~~~~--~~~piIiI~t~~~~~~~~d~~~~~l~~l-~~ll~--r~~~~~I~f~p~s~~~i~~~L~~i 348 (544)
....++.+.|+..++. ....+++|++++.. ..+ +++++ |+ ...|.|++|+.++..++++..
T Consensus 567 ~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~-----------~~ld~allRpgRf-d~~i~v~~Pd~~~R~~i~~~~ 634 (733)
T TIGR01243 567 DTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRP-----------DILDPALLRPGRF-DRLILVPPPDEEARKEIFKIH 634 (733)
T ss_pred CccHHHHHHHHHHHHhhcccCCCCEEEEEeCCCh-----------hhCCHhhcCCCcc-ceEEEeCCcCHHHHHHHHHHH
Confidence 1234555545544442 22356666665321 122 33443 32 567899999999999988765
Q ss_pred HHHhCCCCC-HHHHHHHHHHcC----CcHHHHHHHHHHhc
Q 009072 349 CRQEQYSLS-TEQIDLVAQASG----GDIRQAITSLQFSS 383 (544)
Q Consensus 349 ~~~e~~~i~-~~~l~~Ia~~s~----GDiR~aIn~Lq~~~ 383 (544)
... ..++ +..++.|++.+. .||..+++...+.+
T Consensus 635 ~~~--~~~~~~~~l~~la~~t~g~sgadi~~~~~~A~~~a 672 (733)
T TIGR01243 635 TRS--MPLAEDVDLEELAEMTEGYTGADIEAVCREAAMAA 672 (733)
T ss_pred hcC--CCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 443 3333 335778888755 46766655444444
No 73
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.69 E-value=8.9e-16 Score=163.77 Aligned_cols=205 Identities=14% Similarity=0.118 Sum_probs=137.5
Q ss_pred CCCcchhccChHHHHHHHHHHHHhhc--CCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCCchhhhhhhh
Q 009072 145 PRSLEELAVQRKKVEEVRAWFEERLG--DSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIWQEYMH 222 (544)
Q Consensus 145 P~~~~dLv~~~~~~~~l~~wL~~~~~--~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~~~~~~e~l~ 222 (544)
+.+++++.|.+..++.+......+.. ...|..+++.+||+||||||||++|+++|++++.+++.++.+..
T Consensus 224 ~~~~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l-------- 295 (489)
T CHL00195 224 NEKISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKL-------- 295 (489)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHh--------
Confidence 46889999987666555543322111 11255566899999999999999999999999999999886431
Q ss_pred ccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCch-------hHHHHHHHHHHHHHhcCCCc
Q 009072 223 NCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGR-------TAFERLRQCLLLLVRSTHIP 295 (544)
Q Consensus 223 ~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~-------~~~~~~~~~L~~~~~~~~~p 295 (544)
.+.........++.++..+... .|+||+|||+|.+... +...++...++.++.....|
T Consensus 296 ---~~~~vGese~~l~~~f~~A~~~------------~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~ 360 (489)
T CHL00195 296 ---FGGIVGESESRMRQMIRIAEAL------------SPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSP 360 (489)
T ss_pred ---cccccChHHHHHHHHHHHHHhc------------CCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCc
Confidence 1111223345677777766543 4899999999976331 12345556667777766677
Q ss_pred EEEEEccCCCCCCCCccccchHHHHHHHh--hcCceeEEecCCCHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHcC---
Q 009072 296 TAVVLTECGKADSVDSTAQSFEELQSILV--DAGARKVALNPITNGSIKRTLSKICRQEQYS-LSTEQIDLVAQASG--- 369 (544)
Q Consensus 296 iIiI~t~~~~~~~~d~~~~~l~~l~~ll~--r~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~-i~~~~l~~Ia~~s~--- 369 (544)
+++|++++.... + .+++++ |+ ...|.++.|+.++...+++..+.+.+.. .++..++.|+..+.
T Consensus 361 V~vIaTTN~~~~--------L--d~allR~GRF-D~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfS 429 (489)
T CHL00195 361 VFVVATANNIDL--------L--PLEILRKGRF-DEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFS 429 (489)
T ss_pred eEEEEecCChhh--------C--CHHHhCCCcC-CeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCC
Confidence 877777643211 1 134443 33 4678899999999999999888775432 34566888888854
Q ss_pred -CcHHHHHHHHHHhc
Q 009072 370 -GDIRQAITSLQFSS 383 (544)
Q Consensus 370 -GDiR~aIn~Lq~~~ 383 (544)
+||++++...-..+
T Consensus 430 GAdI~~lv~eA~~~A 444 (489)
T CHL00195 430 GAEIEQSIIEAMYIA 444 (489)
T ss_pred HHHHHHHHHHHHHHH
Confidence 58888776554443
No 74
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.68 E-value=2.1e-15 Score=147.53 Aligned_cols=189 Identities=10% Similarity=0.118 Sum_probs=122.7
Q ss_pred Ccchhc--cChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhC---CeEEEEeCCCchhhhhhh
Q 009072 147 SLEELA--VQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLG---ARLYEWDTPTPTIWQEYM 221 (544)
Q Consensus 147 ~~~dLv--~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg---~~viei~~s~~~~~~e~l 221 (544)
+|++++ .+...+..+..|...+ . .+.++|+||||||||++++++|+++. ..+..+.....
T Consensus 20 ~fd~f~~~~n~~a~~~l~~~~~~~------~--~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~------- 84 (235)
T PRK08084 20 TFASFYPGDNDSLLAALQNALRQE------H--SGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKR------- 84 (235)
T ss_pred CccccccCccHHHHHHHHHHHhCC------C--CCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHH-------
Confidence 566666 3455555555554321 1 15799999999999999999998763 33443332110
Q ss_pred hccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhH-HHHHHHHHHHHHhcCCCcEEEEE
Q 009072 222 HNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTA-FERLRQCLLLLVRSTHIPTAVVL 300 (544)
Q Consensus 222 ~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~-~~~~~~~L~~~~~~~~~piIiI~ 300 (544)
. ....++++... ...+|+|||++.+.+... ...+...+....+.++. .++++
T Consensus 85 ------~------~~~~~~~~~~~--------------~~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~-~li~t 137 (235)
T PRK08084 85 ------A------WFVPEVLEGME--------------QLSLVCIDNIECIAGDELWEMAIFDLYNRILESGRT-RLLIT 137 (235)
T ss_pred ------h------hhhHHHHHHhh--------------hCCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCC-eEEEe
Confidence 0 00112222221 124899999999865432 23344556666665443 45555
Q ss_pred ccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHH
Q 009072 301 TECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIRQAITSLQ 380 (544)
Q Consensus 301 t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~l~~Ia~~s~GDiR~aIn~Lq 380 (544)
++..+... ......+++.+.. ..++.+.+|+.+++..+|++.+...|+.+++++++.|+..+.||+|.+++.|+
T Consensus 138 s~~~p~~l----~~~~~~L~SRl~~--g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~d~r~l~~~l~ 211 (235)
T PRK08084 138 GDRPPRQL----NLGLPDLASRLDW--GQIYKLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDREMRTLFMTLD 211 (235)
T ss_pred CCCChHHc----CcccHHHHHHHhC--CceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCHHHHHHHHH
Confidence 55322110 0112334443322 47999999999999999999898889999999999999999999999999998
Q ss_pred Hhc
Q 009072 381 FSS 383 (544)
Q Consensus 381 ~~~ 383 (544)
.+.
T Consensus 212 ~l~ 214 (235)
T PRK08084 212 QLD 214 (235)
T ss_pred HHH
Confidence 863
No 75
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.68 E-value=2.5e-16 Score=161.64 Aligned_cols=182 Identities=19% Similarity=0.266 Sum_probs=126.4
Q ss_pred chhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhC------------------------C
Q 009072 149 EELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLG------------------------A 204 (544)
Q Consensus 149 ~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg------------------------~ 204 (544)
+++++++..+.++..|...+ ++.+ +.+||+||||+|||++|.++|++++ .
T Consensus 1 ~~~~~~~~~~~~l~~~~~~~-----~~~~-halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (325)
T COG0470 1 DELVPWQEAVKRLLVQALES-----GRLP-HALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHP 74 (325)
T ss_pred CCcccchhHHHHHHHHHHhc-----CCCC-ceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCC
Confidence 36788999999999999886 4443 5699999999999999999999987 5
Q ss_pred eEEEEeCCCchhhhhhhhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHH
Q 009072 205 RLYEWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQC 284 (544)
Q Consensus 205 ~viei~~s~~~~~~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~ 284 (544)
+++++++++.+. .. -..+.++++....... +..++.+||+|||+|.++.. ..++
T Consensus 75 d~lel~~s~~~~-----------~~--i~~~~vr~~~~~~~~~--------~~~~~~kviiidead~mt~~-----A~na 128 (325)
T COG0470 75 DFLELNPSDLRK-----------ID--IIVEQVRELAEFLSES--------PLEGGYKVVIIDEADKLTED-----AANA 128 (325)
T ss_pred ceEEecccccCC-----------Cc--chHHHHHHHHHHhccC--------CCCCCceEEEeCcHHHHhHH-----HHHH
Confidence 788888876432 10 0123344444433221 11245789999999998653 3467
Q ss_pred HHHHHhcCCCcEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHH
Q 009072 285 LLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLV 364 (544)
Q Consensus 285 L~~~~~~~~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~l~~I 364 (544)
|+..++..+....||+..... ...+ +++.+ ||..+.|.|+ ..+..++..+ ++.+..+
T Consensus 129 llk~lEep~~~~~~il~~n~~-------~~il---~tI~S--Rc~~i~f~~~------~~~~~i~~~e-----~~~l~~i 185 (325)
T COG0470 129 LLKTLEEPPKNTRFILITNDP-------SKIL---PTIRS--RCQRIRFKPP------SRLEAIAWLE-----DQGLEEI 185 (325)
T ss_pred HHHHhccCCCCeEEEEEcCCh-------hhcc---chhhh--cceeeecCCc------hHHHHHHHhh-----ccchhHH
Confidence 888887765443333332111 1122 23333 5999999994 4555555554 7788999
Q ss_pred HHHcCCcHHHHHHHHHHhccC
Q 009072 365 AQASGGDIRQAITSLQFSSLK 385 (544)
Q Consensus 365 a~~s~GDiR~aIn~Lq~~~~~ 385 (544)
+..+.||+|+++|.||..+..
T Consensus 186 ~~~~~gd~r~~i~~lq~~~~~ 206 (325)
T COG0470 186 AAVAEGDARKAINPLQALAAL 206 (325)
T ss_pred HHHHHHHHHcCCCHHHHHHHh
Confidence 999999999999999999863
No 76
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.68 E-value=6.3e-16 Score=162.56 Aligned_cols=213 Identities=15% Similarity=0.206 Sum_probs=137.6
Q ss_pred CCCcccccCCCCcchhccChHHHHHHHHHHHHhhcCCC-----CCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEe
Q 009072 136 QQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSK-----DKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWD 210 (544)
Q Consensus 136 ~~lW~eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~-----g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~ 210 (544)
..++++++++.+++|+.|.+..++++++++......+. |..+++.+||+||||||||++|+++|++++..++.+.
T Consensus 170 ~~~~~~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~ 249 (438)
T PTZ00361 170 SVMKVDKAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVV 249 (438)
T ss_pred hhcccccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEe
Confidence 46678999999999999999999999999976554321 4445589999999999999999999999999999988
Q ss_pred CCCchhhhhhhhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCch---------hHHHH-
Q 009072 211 TPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGR---------TAFER- 280 (544)
Q Consensus 211 ~s~~~~~~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~---------~~~~~- 280 (544)
.++.. .. ........++.++..+.. ..|+||+|||+|.+... ....+
T Consensus 250 ~seL~--~k---------~~Ge~~~~vr~lF~~A~~------------~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ 306 (438)
T PTZ00361 250 GSELI--QK---------YLGDGPKLVRELFRVAEE------------NAPSIVFIDEIDAIGTKRYDATSGGEKEIQRT 306 (438)
T ss_pred cchhh--hh---------hcchHHHHHHHHHHHHHh------------CCCcEEeHHHHHHHhccCCCCCCcccHHHHHH
Confidence 76521 00 011122345666665543 24789999999976321 11112
Q ss_pred HHHHHHHHHhc-CCCcEEEEEccCCCCCCCCccccchHHHHH-HHh--hcCceeEEecCCCHHHHHHHHHHHHHHhCCCC
Q 009072 281 LRQCLLLLVRS-THIPTAVVLTECGKADSVDSTAQSFEELQS-ILV--DAGARKVALNPITNGSIKRTLSKICRQEQYSL 356 (544)
Q Consensus 281 ~~~~L~~~~~~-~~~piIiI~t~~~~~~~~d~~~~~l~~l~~-ll~--r~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i 356 (544)
+.+.|.++-.. ....+++|++++ ..+.+.+ +++ |+ ...|.|++|+..+...+++..+.+..+.
T Consensus 307 ll~LL~~Ldg~~~~~~V~VI~ATN-----------r~d~LDpaLlRpGRf-d~~I~~~~Pd~~~R~~Il~~~~~k~~l~- 373 (438)
T PTZ00361 307 MLELLNQLDGFDSRGDVKVIMATN-----------RIESLDPALIRPGRI-DRKIEFPNPDEKTKRRIFEIHTSKMTLA- 373 (438)
T ss_pred HHHHHHHHhhhcccCCeEEEEecC-----------ChHHhhHHhccCCee-EEEEEeCCCCHHHHHHHHHHHHhcCCCC-
Confidence 22323222211 122345555432 2233333 333 22 5689999999999999999877655432
Q ss_pred CHHHHHHHHHH----cCCcHHHHHHHHHHhcc
Q 009072 357 STEQIDLVAQA----SGGDIRQAITSLQFSSL 384 (544)
Q Consensus 357 ~~~~l~~Ia~~----s~GDiR~aIn~Lq~~~~ 384 (544)
++..+..++.. ++.||+.++...-+.+.
T Consensus 374 ~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Al 405 (438)
T PTZ00361 374 EDVDLEEFIMAKDELSGADIKAICTEAGLLAL 405 (438)
T ss_pred cCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 12235555544 55678887776555554
No 77
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=8.3e-16 Score=166.93 Aligned_cols=259 Identities=13% Similarity=0.098 Sum_probs=176.9
Q ss_pred cccccccccccCCccCccccccccccccccccccCCCCCChhhhhhhhhhhhhccCcccccCCCCCCCCCCCcCCCCCCC
Q 009072 59 NVEHFLTPSRFEGLVNPKRDLALGSSSRQQLWTNKNKPCSLEEHAIQKENVGRFLTPSRFEGLVNPDHDSASASSSTQQL 138 (544)
Q Consensus 59 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ed~~~~l~~~~i~~~~~~~~~~~~~~~~~~~l 138 (544)
+++...++..++||.+++...+++.+....+...- ......+.+..+++.+.+. ++... ..
T Consensus 171 ~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~--~~~~~~~~~~~~~~~~~l~--~~~~~---------------~~ 231 (494)
T COG0464 171 PGTGKTLAARTVGKSGADLGALAKEAALRELRRAI--DLVGEYIGVTEDDFEEALK--KVLPS---------------RG 231 (494)
T ss_pred cccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhh--ccCcccccccHHHHHHHHH--hcCcc---------------cc
Confidence 56777899999999999999999887666632210 1113456778888888887 44211 00
Q ss_pred cccccCCCCcchhccChHHHHHHHHHHHHhhcCCC-----CCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCC
Q 009072 139 WAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSK-----DKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPT 213 (544)
Q Consensus 139 W~eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~-----g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~ 213 (544)
-.......++.++.|.+.....+++.+......+. +..+++.+||+||||||||++|+++|.+++.+++.+..++
T Consensus 232 ~~~~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~ 311 (494)
T COG0464 232 VLFEDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSE 311 (494)
T ss_pred cccCCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHH
Confidence 12233446888999888887777777766555444 5556689999999999999999999999999999999874
Q ss_pred chhhhhhhhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCch------hHHHHHHHHHHH
Q 009072 214 PTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGR------TAFERLRQCLLL 287 (544)
Q Consensus 214 ~~~~~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~------~~~~~~~~~L~~ 287 (544)
..+....+....++..+..+.+. .|+||||||+|.+... +...++.+.|+.
T Consensus 312 -----------l~sk~vGesek~ir~~F~~A~~~------------~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~ 368 (494)
T COG0464 312 -----------LLSKWVGESEKNIRELFEKARKL------------APSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLT 368 (494)
T ss_pred -----------HhccccchHHHHHHHHHHHHHcC------------CCcEEEEEchhhhhccCCCCCchHHHHHHHHHHH
Confidence 23344556668889999988744 4899999999987332 112355544554
Q ss_pred HHh--cCCCcEEEEEccCCCCCCCCccccchHHHHHHHh--hcCceeEEecCCCHHHHHHHHHHHHHHhCCC-CCHHHHH
Q 009072 288 LVR--STHIPTAVVLTECGKADSVDSTAQSFEELQSILV--DAGARKVALNPITNGSIKRTLSKICRQEQYS-LSTEQID 362 (544)
Q Consensus 288 ~~~--~~~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~--r~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~-i~~~~l~ 362 (544)
.+. .....+++|.+++.. +..| .++++ |+ ...|.|++|+..+..++++..+...... ..+..++
T Consensus 369 ~~d~~e~~~~v~vi~aTN~p-~~ld---------~a~lR~gRf-d~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~ 437 (494)
T COG0464 369 ELDGIEKAEGVLVIAATNRP-DDLD---------PALLRPGRF-DRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLE 437 (494)
T ss_pred HhcCCCccCceEEEecCCCc-cccC---------HhhcccCcc-ceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHH
Confidence 443 222345555554322 1111 23344 43 5689999999999999999887765543 4466777
Q ss_pred HHHHHcCC
Q 009072 363 LVAQASGG 370 (544)
Q Consensus 363 ~Ia~~s~G 370 (544)
.+++.+.|
T Consensus 438 ~l~~~t~~ 445 (494)
T COG0464 438 ELAEITEG 445 (494)
T ss_pred HHHHHhcC
Confidence 88876555
No 78
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.67 E-value=2.2e-15 Score=157.36 Aligned_cols=220 Identities=18% Similarity=0.222 Sum_probs=134.4
Q ss_pred CCcccccCCCCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhC---------CeEE
Q 009072 137 QLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLG---------ARLY 207 (544)
Q Consensus 137 ~lW~eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg---------~~vi 207 (544)
..+...|.|. +++++++.+++|..++..... |..+ +.++|+||||+|||++++.+++++. +.++
T Consensus 6 ~~l~~~~~p~---~l~gRe~e~~~l~~~l~~~~~---~~~~-~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v 78 (365)
T TIGR02928 6 DLLEPDYVPD---RIVHRDEQIEELAKALRPILR---GSRP-SNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTV 78 (365)
T ss_pred hhCCCCCCCC---CCCCcHHHHHHHHHHHHHHHc---CCCC-CcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEE
Confidence 4456788896 569999999999999998765 3222 6799999999999999999998763 5788
Q ss_pred EEeCCCchhhh----hhhhcccc-Cccc----ccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHH
Q 009072 208 EWDTPTPTIWQ----EYMHNCKT-GLEY----TSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAF 278 (544)
Q Consensus 208 ei~~s~~~~~~----e~l~~~~~-g~~~----~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~ 278 (544)
.+++....... ..+..... +... .+..+.+..++..+... .++.||+|||+|.+....
T Consensus 79 ~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~-----------~~~~vlvIDE~d~L~~~~-- 145 (365)
T TIGR02928 79 YVNCQILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNER-----------GDSLIIVLDEIDYLVGDD-- 145 (365)
T ss_pred EEECCCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhc-----------CCeEEEEECchhhhccCC--
Confidence 88876543221 11111110 1111 01122233444333211 357799999999985321
Q ss_pred HHHHHHHHHH--Hhc-CCCcEEEEEccCCCCCCCCccccchHHH-HHHHhhcCceeEEecCCCHHHHHHHHHHHHHH--h
Q 009072 279 ERLRQCLLLL--VRS-THIPTAVVLTECGKADSVDSTAQSFEEL-QSILVDAGARKVALNPITNGSIKRTLSKICRQ--E 352 (544)
Q Consensus 279 ~~~~~~L~~~--~~~-~~~piIiI~t~~~~~~~~d~~~~~l~~l-~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~--e 352 (544)
..+...|..+ ... ...++++|+..+.. + ..+.+ +.+.+++....|.|+|++.+++..+|...+.. .
T Consensus 146 ~~~L~~l~~~~~~~~~~~~~v~lI~i~n~~----~----~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~ 217 (365)
T TIGR02928 146 DDLLYQLSRARSNGDLDNAKVGVIGISNDL----K----FRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFY 217 (365)
T ss_pred cHHHHhHhccccccCCCCCeEEEEEEECCc----c----hHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhcc
Confidence 1222223333 111 11333333322111 0 01112 22334433467999999999999999998863 2
Q ss_pred CCCCCHHHHHHHH---HHcCCcHHHHHHHHHHhcc
Q 009072 353 QYSLSTEQIDLVA---QASGGDIRQAITSLQFSSL 384 (544)
Q Consensus 353 ~~~i~~~~l~~Ia---~~s~GDiR~aIn~Lq~~~~ 384 (544)
...+++++++.++ ..+.||+|.|++.|+.+..
T Consensus 218 ~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~ 252 (365)
T TIGR02928 218 DGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGE 252 (365)
T ss_pred CCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3347788766654 4567999999999987653
No 79
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.67 E-value=1.5e-15 Score=165.11 Aligned_cols=216 Identities=17% Similarity=0.251 Sum_probs=135.7
Q ss_pred CCCcccccCCCCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHh----------CCe
Q 009072 136 QQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL----------GAR 205 (544)
Q Consensus 136 ~~lW~eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~el----------g~~ 205 (544)
.+.|.+||||.+|++++|++..++.++..+.. ..+ .++||+||||||||++|+++.+++ +.+
T Consensus 52 ~~~~~~~~rp~~f~~iiGqs~~i~~l~~al~~------~~~--~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~ 123 (531)
T TIGR02902 52 TEPLSEKTRPKSFDEIIGQEEGIKALKAALCG------PNP--QHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAA 123 (531)
T ss_pred cchHHHhhCcCCHHHeeCcHHHHHHHHHHHhC------CCC--ceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCC
Confidence 67899999999999999999999998866422 222 679999999999999999998753 356
Q ss_pred EEEEeCCCch----hhhhhhhc-cccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHH
Q 009072 206 LYEWDTPTPT----IWQEYMHN-CKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFER 280 (544)
Q Consensus 206 viei~~s~~~----~~~e~l~~-~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~ 280 (544)
++++++...+ .+.+.+.. ..... +.. ...+.... ....... .-......+|+|||++.++..
T Consensus 124 fi~id~~~~~~~~~~~~~~li~~~~~p~-~~~-----~~~~g~~g-~~~~~~G-~l~~a~gG~L~IdEI~~L~~~----- 190 (531)
T TIGR02902 124 FVEIDATTARFDERGIADPLIGSVHDPI-YQG-----AGPLGIAG-IPQPKPG-AVTRAHGGVLFIDEIGELHPV----- 190 (531)
T ss_pred EEEEccccccCCccccchhhcCCcccch-hcc-----ccccccCC-cccccCc-hhhccCCcEEEEechhhCCHH-----
Confidence 7888865321 11100000 00000 000 00000000 0000000 000123469999999998753
Q ss_pred HHHHHHHHHhcCC----------------------------CcEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEE
Q 009072 281 LRQCLLLLVRSTH----------------------------IPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVA 332 (544)
Q Consensus 281 ~~~~L~~~~~~~~----------------------------~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~ 332 (544)
.++.|+++++... ....+|++++.... ...+++.+ ||..|.
T Consensus 191 ~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~---------~L~paLrs--R~~~I~ 259 (531)
T TIGR02902 191 QMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPE---------EIPPALRS--RCVEIF 259 (531)
T ss_pred HHHHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcc---------cCChHHhh--hhheee
Confidence 2334444443311 11233433322111 01134444 488999
Q ss_pred ecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHhcc
Q 009072 333 LNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIRQAITSLQFSSL 384 (544)
Q Consensus 333 f~p~s~~~i~~~L~~i~~~e~~~i~~~~l~~Ia~~s~GDiR~aIn~Lq~~~~ 384 (544)
|.|++.+++..++++.+.+.++.+++++++.|+..+. |.|.++|.+|.++.
T Consensus 260 f~pL~~eei~~Il~~~a~k~~i~is~~al~~I~~y~~-n~Rel~nll~~Aa~ 310 (531)
T TIGR02902 260 FRPLLDEEIKEIAKNAAEKIGINLEKHALELIVKYAS-NGREAVNIVQLAAG 310 (531)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhhh-hHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998887664 99999999999864
No 80
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=8.5e-16 Score=152.85 Aligned_cols=208 Identities=14% Similarity=0.156 Sum_probs=135.3
Q ss_pred CCCCcchhccChHHHHHHHHHHHHhhcCCC----CCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCCchhhhh
Q 009072 144 KPRSLEELAVQRKKVEEVRAWFEERLGDSK----DKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIWQE 219 (544)
Q Consensus 144 ~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~----g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~~~~~~e 219 (544)
+-.+++|++|..+.++-|++.+...+..+. .+.|-+.+|++||||+|||.+|+++|.|+|..++.+.+++..
T Consensus 207 p~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstlt---- 282 (491)
T KOG0738|consen 207 PNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLT---- 282 (491)
T ss_pred CCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhh----
Confidence 346889999999998888877654332221 455668999999999999999999999999999988877632
Q ss_pred hhhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCc-------hhHHHHHHHHHHHHHhcC
Q 009072 220 YMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNG-------RTAFERLRQCLLLLVRST 292 (544)
Q Consensus 220 ~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~-------~~~~~~~~~~L~~~~~~~ 292 (544)
...-..+.+-++-+++.++.|+ |.+|||||||.+.+ ..+-+|+...|+..++..
T Consensus 283 -------SKwRGeSEKlvRlLFemARfyA------------PStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~ 343 (491)
T KOG0738|consen 283 -------SKWRGESEKLVRLLFEMARFYA------------PSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGV 343 (491)
T ss_pred -------hhhccchHHHHHHHHHHHHHhC------------CceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhcc
Confidence 2223344566677778787775 78999999998732 235677775455443321
Q ss_pred C-----CcEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 009072 293 H-----IPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQA 367 (544)
Q Consensus 293 ~-----~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~l~~Ia~~ 367 (544)
. ..+|++.+.++.. | +...++++|+ -..|.++.|+.+ -++.|.+++..+-...++-.++.|++.
T Consensus 344 ~~t~e~~k~VmVLAATN~P-------W--diDEAlrRRl-EKRIyIPLP~~~-~R~~Li~~~l~~~~~~~~~~~~~lae~ 412 (491)
T KOG0738|consen 344 QGTLENSKVVMVLAATNFP-------W--DIDEALRRRL-EKRIYIPLPDAE-ARSALIKILLRSVELDDPVNLEDLAER 412 (491)
T ss_pred ccccccceeEEEEeccCCC-------c--chHHHHHHHH-hhheeeeCCCHH-HHHHHHHHhhccccCCCCccHHHHHHH
Confidence 1 2345555544321 1 1123444442 334555555554 455555566555444556667777777
Q ss_pred c----CCcHHHHHHHHHHhccC
Q 009072 368 S----GGDIRQAITSLQFSSLK 385 (544)
Q Consensus 368 s----~GDiR~aIn~Lq~~~~~ 385 (544)
+ +-||+.+....-+..++
T Consensus 413 ~eGySGaDI~nvCreAsm~~mR 434 (491)
T KOG0738|consen 413 SEGYSGADITNVCREASMMAMR 434 (491)
T ss_pred hcCCChHHHHHHHHHHHHHHHH
Confidence 4 44899888777766654
No 81
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.66 E-value=2.8e-15 Score=156.67 Aligned_cols=210 Identities=14% Similarity=0.182 Sum_probs=137.0
Q ss_pred ccccCCCCcchhccChHHHHHHHHHHHHhhcCCC-----CCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCCc
Q 009072 140 AEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSK-----DKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTP 214 (544)
Q Consensus 140 ~eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~-----g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~~ 214 (544)
++..+..+++|++|.+..++++++++..++..+. |..+++.+||+||||||||++|+++|++++..++.+..+..
T Consensus 136 ~~~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l 215 (398)
T PTZ00454 136 MSEKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEF 215 (398)
T ss_pred ccCCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHH
Confidence 4556678999999999999999999876655322 55566899999999999999999999999999998876431
Q ss_pred hhhhhhhhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCch---------hHHHHHHHHH
Q 009072 215 TIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGR---------TAFERLRQCL 285 (544)
Q Consensus 215 ~~~~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~---------~~~~~~~~~L 285 (544)
. ..+ .......+++++..+.. ..|+||+|||+|.+... ....+....|
T Consensus 216 ~--~k~---------~ge~~~~lr~lf~~A~~------------~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~L 272 (398)
T PTZ00454 216 V--QKY---------LGEGPRMVRDVFRLARE------------NAPSIIFIDEVDSIATKRFDAQTGADREVQRILLEL 272 (398)
T ss_pred H--HHh---------cchhHHHHHHHHHHHHh------------cCCeEEEEECHhhhccccccccCCccHHHHHHHHHH
Confidence 1 000 11122445666665543 34889999999986321 1122222222
Q ss_pred HHHHhc--CCCcEEEEEccCCCCCCCCccccchHHH-HHHHh--hcCceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHH
Q 009072 286 LLLVRS--THIPTAVVLTECGKADSVDSTAQSFEEL-QSILV--DAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQ 360 (544)
Q Consensus 286 ~~~~~~--~~~piIiI~t~~~~~~~~d~~~~~l~~l-~~ll~--r~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~ 360 (544)
+..++. ...++++|+++... +.+ +++++ |+ ...|.|++|+.++...+++.++.+.++. .+..
T Consensus 273 L~~ld~~~~~~~v~VI~aTN~~-----------d~LDpAllR~GRf-d~~I~~~~P~~~~R~~Il~~~~~~~~l~-~dvd 339 (398)
T PTZ00454 273 LNQMDGFDQTTNVKVIMATNRA-----------DTLDPALLRPGRL-DRKIEFPLPDRRQKRLIFQTITSKMNLS-EEVD 339 (398)
T ss_pred HHHhhccCCCCCEEEEEecCCc-----------hhCCHHHcCCCcc-cEEEEeCCcCHHHHHHHHHHHHhcCCCC-cccC
Confidence 222221 22345555554321 222 23343 22 4679999999999999999887765543 2334
Q ss_pred HHHHHHHc----CCcHHHHHHHHHHhccC
Q 009072 361 IDLVAQAS----GGDIRQAITSLQFSSLK 385 (544)
Q Consensus 361 l~~Ia~~s----~GDiR~aIn~Lq~~~~~ 385 (544)
+..++..+ +.||...++...+.+..
T Consensus 340 ~~~la~~t~g~sgaDI~~l~~eA~~~A~r 368 (398)
T PTZ00454 340 LEDFVSRPEKISAADIAAICQEAGMQAVR 368 (398)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 66777664 45788877777666653
No 82
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.66 E-value=3e-15 Score=154.83 Aligned_cols=201 Identities=14% Similarity=0.181 Sum_probs=131.2
Q ss_pred cCCCCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeC-----------
Q 009072 143 YKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDT----------- 211 (544)
Q Consensus 143 y~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~----------- 211 (544)
.+|+++.+|+||+..++.|.+.+.. |+.+ +.+||+||+|+||+++|..+|+.+-+.--.-..
T Consensus 13 ~~P~~~~~iiGq~~~~~~L~~~~~~------~rl~-HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~ 85 (365)
T PRK07471 13 PHPRETTALFGHAAAEAALLDAYRS------GRLH-HAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAI 85 (365)
T ss_pred CCCCchhhccChHHHHHHHHHHHHc------CCCC-ceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccC
Confidence 6899999999999999999988876 6665 789999999999999999999998543100000
Q ss_pred CCch-hhhhh-------hhcccc---Ccc----cccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchh
Q 009072 212 PTPT-IWQEY-------MHNCKT---GLE----YTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRT 276 (544)
Q Consensus 212 s~~~-~~~e~-------l~~~~~---g~~----~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~ 276 (544)
...+ ..... +.-+.. ... ..-..+.++++...+... + ..+.++|+||||+|.++..
T Consensus 86 ~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~----~----~~~~~kVviIDead~m~~~- 156 (365)
T PRK07471 86 DPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLT----A----AEGGWRVVIVDTADEMNAN- 156 (365)
T ss_pred CCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcC----c----ccCCCEEEEEechHhcCHH-
Confidence 0000 00000 000000 000 011235555555443211 1 2246889999999998753
Q ss_pred HHHHHHHHHHHHHhcCCC-cEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHHhCCC
Q 009072 277 AFERLRQCLLLLVRSTHI-PTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYS 355 (544)
Q Consensus 277 ~~~~~~~~L~~~~~~~~~-piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~ 355 (544)
..++|++.++..+. +++++++.... ..+..+.+ ||..+.|.|++.+++...|... +..
T Consensus 157 ----aanaLLK~LEepp~~~~~IL~t~~~~-----------~llpti~S--Rc~~i~l~~l~~~~i~~~L~~~----~~~ 215 (365)
T PRK07471 157 ----AANALLKVLEEPPARSLFLLVSHAPA-----------RLLPTIRS--RCRKLRLRPLAPEDVIDALAAA----GPD 215 (365)
T ss_pred ----HHHHHHHHHhcCCCCeEEEEEECCch-----------hchHHhhc--cceEEECCCCCHHHHHHHHHHh----ccc
Confidence 23568888887643 34555443210 11234444 5999999999999999998864 233
Q ss_pred CCHHHHHHHHHHcCCcHHHHHHHHH
Q 009072 356 LSTEQIDLVAQASGGDIRQAITSLQ 380 (544)
Q Consensus 356 i~~~~l~~Ia~~s~GDiR~aIn~Lq 380 (544)
.+++.+..++..++|+++.|+..++
T Consensus 216 ~~~~~~~~l~~~s~Gsp~~Al~ll~ 240 (365)
T PRK07471 216 LPDDPRAALAALAEGSVGRALRLAG 240 (365)
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHhc
Confidence 4566668899999999999998875
No 83
>PRK08727 hypothetical protein; Validated
Probab=99.65 E-value=1.4e-14 Score=141.52 Aligned_cols=189 Identities=13% Similarity=0.155 Sum_probs=118.0
Q ss_pred CCcchhccChHH-HHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeCCCchhhhhhh
Q 009072 146 RSLEELAVQRKK-VEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTPTPTIWQEYM 221 (544)
Q Consensus 146 ~~~~dLv~~~~~-~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~el---g~~viei~~s~~~~~~e~l 221 (544)
.+|+++++.+.. +..+..+.. +.. ...++|+||+|||||+++++++.++ |..++.+...+
T Consensus 16 ~~f~~f~~~~~n~~~~~~~~~~-------~~~-~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~-------- 79 (233)
T PRK08727 16 QRFDSYIAAPDGLLAQLQALAA-------GQS-SDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQA-------- 79 (233)
T ss_pred CChhhccCCcHHHHHHHHHHHh-------ccC-CCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHH--------
Confidence 477777765542 222222221 222 2569999999999999999998764 55554443211
Q ss_pred hccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHH-HHHHHHHHHHHhcCCCcEEEEE
Q 009072 222 HNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAF-ERLRQCLLLLVRSTHIPTAVVL 300 (544)
Q Consensus 222 ~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~-~~~~~~L~~~~~~~~~piIiI~ 300 (544)
....+.+.++... ...+|+|||++.+.+.... ..+.+.+....+ ...+ |+++
T Consensus 80 -----------~~~~~~~~~~~l~--------------~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~-~~~~-vI~t 132 (233)
T PRK08727 80 -----------AAGRLRDALEALE--------------GRSLVALDGLESIAGQREDEVALFDFHNRARA-AGIT-LLYT 132 (233)
T ss_pred -----------hhhhHHHHHHHHh--------------cCCEEEEeCcccccCChHHHHHHHHHHHHHHH-cCCe-EEEE
Confidence 0012223333322 2349999999988653221 122233333322 2233 4444
Q ss_pred ccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHH
Q 009072 301 TECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIRQAITSLQ 380 (544)
Q Consensus 301 t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~l~~Ia~~s~GDiR~aIn~Lq 380 (544)
++..+.. .......+.+.+. .+..+.|++|+.+++..+|++++..+++.+++++++.|++.++||+|.+++.|+
T Consensus 133 s~~~p~~----l~~~~~dL~SRl~--~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l~~e~~~~La~~~~rd~r~~l~~L~ 206 (233)
T PRK08727 133 ARQMPDG----LALVLPDLRSRLA--QCIRIGLPVLDDVARAAVLRERAQRRGLALDEAAIDWLLTHGERELAGLVALLD 206 (233)
T ss_pred CCCChhh----hhhhhHHHHHHHh--cCceEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCHHHHHHHHH
Confidence 4422110 1111233333332 267899999999999999999999999999999999999999999999999998
Q ss_pred Hhc
Q 009072 381 FSS 383 (544)
Q Consensus 381 ~~~ 383 (544)
.+.
T Consensus 207 ~l~ 209 (233)
T PRK08727 207 RLD 209 (233)
T ss_pred HHH
Confidence 664
No 84
>PRK06620 hypothetical protein; Validated
Probab=99.65 E-value=1e-14 Score=140.27 Aligned_cols=178 Identities=15% Similarity=0.148 Sum_probs=117.6
Q ss_pred Ccchhcc---ChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCCchhhhhhhhc
Q 009072 147 SLEELAV---QRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIWQEYMHN 223 (544)
Q Consensus 147 ~~~dLv~---~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~~~~~~e~l~~ 223 (544)
+++++++ +......++.|...|. ..+..+.++||||||||||++++++++..+..++. .
T Consensus 14 tfd~Fvvg~~N~~a~~~~~~~~~~~~----~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~----~---------- 75 (214)
T PRK06620 14 HPDEFIVSSSNDQAYNIIKNWQCGFG----VNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYIIK----D---------- 75 (214)
T ss_pred CchhhEecccHHHHHHHHHHHHHccc----cCCCcceEEEECCCCCCHHHHHHHHHhccCCEEcc----h----------
Confidence 4555554 3455566666654331 11212679999999999999999999987753321 0
Q ss_pred cccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHHHHHhcCCCcEEEEEccC
Q 009072 224 CKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPTAVVLTEC 303 (544)
Q Consensus 224 ~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~~~~~~~~piIiI~t~~ 303 (544)
... ...+ + ....+++|||++.... ..+...+..+.+.++ .++|++++
T Consensus 76 ----~~~------~~~~------~-----------~~~d~lliDdi~~~~~----~~lf~l~N~~~e~g~--~ilits~~ 122 (214)
T PRK06620 76 ----IFF------NEEI------L-----------EKYNAFIIEDIENWQE----PALLHIFNIINEKQK--YLLLTSSD 122 (214)
T ss_pred ----hhh------chhH------H-----------hcCCEEEEeccccchH----HHHHHHHHHHHhcCC--EEEEEcCC
Confidence 000 0011 1 1134899999996522 123344455555543 45666654
Q ss_pred CCCCCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHhc
Q 009072 304 GKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIRQAITSLQFSS 383 (544)
Q Consensus 304 ~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~l~~Ia~~s~GDiR~aIn~Lq~~~ 383 (544)
.+. .. .+..+++.+.. +.++.+++|+.+.+..++++.+...++.+++++++.|+..+.||+|.+++.|+.+.
T Consensus 123 ~p~-----~l-~l~~L~SRl~~--gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ev~~~L~~~~~~d~r~l~~~l~~l~ 194 (214)
T PRK06620 123 KSR-----NF-TLPDLSSRIKS--VLSILLNSPDDELIKILIFKHFSISSVTISRQIIDFLLVNLPREYSKIIEILENIN 194 (214)
T ss_pred Ccc-----cc-chHHHHHHHhC--CceEeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 432 11 12334443332 45899999999999999999999889999999999999999999999999998864
No 85
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.65 E-value=1.6e-15 Score=164.35 Aligned_cols=213 Identities=15% Similarity=0.220 Sum_probs=139.0
Q ss_pred CCCCCcccccCCCCcchhccChHHHHHHHHHHHHhhcCC-----CCCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEE
Q 009072 134 STQQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDS-----KDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYE 208 (544)
Q Consensus 134 ~~~~lW~eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~-----~g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~vie 208 (544)
.....+.+..+..+|+|++|.+..++++++++... ..+ .|..+++.+||+||||||||++|+++|++++.+++.
T Consensus 40 ~~~~~~~~~~~~~~~~di~g~~~~k~~l~~~~~~l-~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~ 118 (495)
T TIGR01241 40 SKAKLLNEEKPKVTFKDVAGIDEAKEELMEIVDFL-KNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFS 118 (495)
T ss_pred CccccccCCCCCCCHHHhCCHHHHHHHHHHHHHHH-HCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeee
Confidence 33455667777889999999999998888877642 211 133444789999999999999999999999999998
Q ss_pred EeCCCchhhhhhhhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCch---------hHHH
Q 009072 209 WDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGR---------TAFE 279 (544)
Q Consensus 209 i~~s~~~~~~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~---------~~~~ 279 (544)
++.++.... ..| .....++.++..+... .|+||||||+|.+... ....
T Consensus 119 i~~~~~~~~-------~~g----~~~~~l~~~f~~a~~~------------~p~Il~iDEid~l~~~r~~~~~~~~~~~~ 175 (495)
T TIGR01241 119 ISGSDFVEM-------FVG----VGASRVRDLFEQAKKN------------APCIIFIDEIDAVGRQRGAGLGGGNDERE 175 (495)
T ss_pred ccHHHHHHH-------Hhc----ccHHHHHHHHHHHHhc------------CCCEEEEechhhhhhccccCcCCccHHHH
Confidence 876542110 111 1225667777776543 3789999999987431 1122
Q ss_pred HHHHHHHHHHhc--CCCcEEEEEccCCCCCCCCccccchHHH-HHHHh--hcCceeEEecCCCHHHHHHHHHHHHHHhCC
Q 009072 280 RLRQCLLLLVRS--THIPTAVVLTECGKADSVDSTAQSFEEL-QSILV--DAGARKVALNPITNGSIKRTLSKICRQEQY 354 (544)
Q Consensus 280 ~~~~~L~~~~~~--~~~piIiI~t~~~~~~~~d~~~~~l~~l-~~ll~--r~~~~~I~f~p~s~~~i~~~L~~i~~~e~~ 354 (544)
+..+.|+..++. ....+++|++++.. ..+ +++++ |+ ...|.|+.|+.++..++++..+.....
T Consensus 176 ~~~~~lL~~~d~~~~~~~v~vI~aTn~~-----------~~ld~al~r~gRf-d~~i~i~~Pd~~~R~~il~~~l~~~~~ 243 (495)
T TIGR01241 176 QTLNQLLVEMDGFGTNTGVIVIAATNRP-----------DVLDPALLRPGRF-DRQVVVDLPDIKGREEILKVHAKNKKL 243 (495)
T ss_pred HHHHHHHhhhccccCCCCeEEEEecCCh-----------hhcCHHHhcCCcc-eEEEEcCCCCHHHHHHHHHHHHhcCCC
Confidence 333333333332 22245666555321 122 23333 22 457999999999999999987765443
Q ss_pred CCCHHHHHHHHHHc----CCcHHHHHHHHHHhc
Q 009072 355 SLSTEQIDLVAQAS----GGDIRQAITSLQFSS 383 (544)
Q Consensus 355 ~i~~~~l~~Ia~~s----~GDiR~aIn~Lq~~~ 383 (544)
. ++..+..|+..+ ++||+.+++.....+
T Consensus 244 ~-~~~~l~~la~~t~G~sgadl~~l~~eA~~~a 275 (495)
T TIGR01241 244 A-PDVDLKAVARRTPGFSGADLANLLNEAALLA 275 (495)
T ss_pred C-cchhHHHHHHhCCCCCHHHHHHHHHHHHHHH
Confidence 3 345577888774 468998888654443
No 86
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.64 E-value=1.2e-14 Score=153.58 Aligned_cols=218 Identities=17% Similarity=0.179 Sum_probs=134.2
Q ss_pred CcccccCCCCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHh-----CCeEEEEeCC
Q 009072 138 LWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL-----GARLYEWDTP 212 (544)
Q Consensus 138 lW~eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~el-----g~~viei~~s 212 (544)
.+...|.|. .++++++.+++|..++..... +..+ ..++|+||||+|||++++.+++++ ++.++.+++.
T Consensus 22 ~l~~~~~P~---~l~~Re~e~~~l~~~l~~~~~---~~~~-~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~ 94 (394)
T PRK00411 22 VLEPDYVPE---NLPHREEQIEELAFALRPALR---GSRP-LNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQ 94 (394)
T ss_pred hCCCCCcCC---CCCCHHHHHHHHHHHHHHHhC---CCCC-CeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECC
Confidence 344456664 469999999999999988765 3223 579999999999999999999987 5788899886
Q ss_pred Cchhhh----hhhhcccc-Cccc--ccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHH
Q 009072 213 TPTIWQ----EYMHNCKT-GLEY--TSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCL 285 (544)
Q Consensus 213 ~~~~~~----e~l~~~~~-g~~~--~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L 285 (544)
...... ..+..... .... .+....+..+.+.+.. .+++.||+|||+|.+..... ......|
T Consensus 95 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~-----------~~~~~viviDE~d~l~~~~~-~~~l~~l 162 (394)
T PRK00411 95 IDRTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDE-----------RDRVLIVALDDINYLFEKEG-NDVLYSL 162 (394)
T ss_pred cCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHh-----------cCCEEEEEECCHhHhhccCC-chHHHHH
Confidence 543221 11111111 0000 0111222233322221 13568999999998752111 1122233
Q ss_pred HHHHhc-CCCc--EEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHHh--CCCCCHHH
Q 009072 286 LLLVRS-THIP--TAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQE--QYSLSTEQ 360 (544)
Q Consensus 286 ~~~~~~-~~~p--iIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e--~~~i~~~~ 360 (544)
...... ...+ +|++.++.... . .+. +.+.++++...|.|+|++.+++..+|+..+... ...+++++
T Consensus 163 ~~~~~~~~~~~v~vI~i~~~~~~~------~-~l~--~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~ 233 (394)
T PRK00411 163 LRAHEEYPGARIGVIGISSDLTFL------Y-ILD--PRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEV 233 (394)
T ss_pred HHhhhccCCCeEEEEEEECCcchh------h-hcC--HHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhH
Confidence 333332 2223 33333331100 0 011 222334445789999999999999999988643 23588999
Q ss_pred HHHHHHHc---CCcHHHHHHHHHHhc
Q 009072 361 IDLVAQAS---GGDIRQAITSLQFSS 383 (544)
Q Consensus 361 l~~Ia~~s---~GDiR~aIn~Lq~~~ 383 (544)
++.+++.+ .||+|.|++.|..++
T Consensus 234 l~~i~~~~~~~~Gd~r~a~~ll~~a~ 259 (394)
T PRK00411 234 LDLIADLTAREHGDARVAIDLLRRAG 259 (394)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 99998887 899999999997654
No 87
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.64 E-value=5.2e-15 Score=157.75 Aligned_cols=193 Identities=15% Similarity=0.156 Sum_probs=122.9
Q ss_pred CCCCCcccccCCCCcchhccChHHHHHHHHHHHHhhcCC-----CCCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEE
Q 009072 134 STQQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDS-----KDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYE 208 (544)
Q Consensus 134 ~~~~lW~eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~-----~g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~vie 208 (544)
....+..+++++.+++|++|.+..+++++..+......+ .|..+++.+|||||||||||++|+++|++++..+..
T Consensus 167 ~~~~l~~~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~ 246 (512)
T TIGR03689 167 EVEDLVLEEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGA 246 (512)
T ss_pred HHhcceeecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhcccccc
Confidence 345667789999999999999999999999987644332 255566899999999999999999999999765332
Q ss_pred ----------EeCCCchhhhhhhhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCch---
Q 009072 209 ----------WDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGR--- 275 (544)
Q Consensus 209 ----------i~~s~~~~~~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~--- 275 (544)
+..++ ............++.+++.+...+ ....|+||||||+|.+...
T Consensus 247 ~~~~~~~fl~v~~~e-----------Ll~kyvGete~~ir~iF~~Ar~~a--------~~g~p~IIfIDEiD~L~~~R~~ 307 (512)
T TIGR03689 247 ETGDKSYFLNIKGPE-----------LLNKYVGETERQIRLIFQRAREKA--------SDGRPVIVFFDEMDSIFRTRGS 307 (512)
T ss_pred ccCCceeEEeccchh-----------hcccccchHHHHHHHHHHHHHHHh--------hcCCCceEEEehhhhhhcccCC
Confidence 11111 001111223345666676665432 1245899999999987431
Q ss_pred ----hHHHHHHHHHHHHHhcCC--CcEEEEEccCCCCCCCCccccchHHH-HHHHhhcC-ceeEEecCCCHHHHHHHHHH
Q 009072 276 ----TAFERLRQCLLLLVRSTH--IPTAVVLTECGKADSVDSTAQSFEEL-QSILVDAG-ARKVALNPITNGSIKRTLSK 347 (544)
Q Consensus 276 ----~~~~~~~~~L~~~~~~~~--~piIiI~t~~~~~~~~d~~~~~l~~l-~~ll~r~~-~~~I~f~p~s~~~i~~~L~~ 347 (544)
+.-.++...|+..++.-. ..+++|++++.. +.+ +++++..| ...|.|++|+.++...+++.
T Consensus 308 ~~s~d~e~~il~~LL~~LDgl~~~~~ViVI~ATN~~-----------d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~ 376 (512)
T TIGR03689 308 GVSSDVETTVVPQLLSELDGVESLDNVIVIGASNRE-----------DMIDPAILRPGRLDVKIRIERPDAEAAADIFSK 376 (512)
T ss_pred CccchHHHHHHHHHHHHhcccccCCceEEEeccCCh-----------hhCCHhhcCccccceEEEeCCCCHHHHHHHHHH
Confidence 111233344554444221 245555554221 122 34444212 45699999999999999998
Q ss_pred HHHHhCCCCC
Q 009072 348 ICRQEQYSLS 357 (544)
Q Consensus 348 i~~~e~~~i~ 357 (544)
.+.. .+.++
T Consensus 377 ~l~~-~l~l~ 385 (512)
T TIGR03689 377 YLTD-SLPLD 385 (512)
T ss_pred Hhhc-cCCch
Confidence 7653 34443
No 88
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.63 E-value=1.1e-14 Score=147.81 Aligned_cols=198 Identities=15% Similarity=0.205 Sum_probs=131.4
Q ss_pred CcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhCCe----------EEEEeCCCchh
Q 009072 147 SLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGAR----------LYEWDTPTPTI 216 (544)
Q Consensus 147 ~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~----------viei~~s~~~~ 216 (544)
.|++++|++..++.+...+.. |+.+ +.+||+||+|+||+++|.++|+.+.+. +...+.||...
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~------~rl~-ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~ 74 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQ------NRIA-PAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLW 74 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHh------CCCC-ceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEE
Confidence 478999999999999998876 6665 899999999999999999999997433 22334444321
Q ss_pred hhhhhhccccCcc----------------cccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHH
Q 009072 217 WQEYMHNCKTGLE----------------YTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFER 280 (544)
Q Consensus 217 ~~e~l~~~~~g~~----------------~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~ 280 (544)
...... ..|.. ..-..+.++++.+.+... + ..+..+|+|||+++.|+..
T Consensus 75 i~p~~~--~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~----p----~~~~~kVvII~~ae~m~~~----- 139 (314)
T PRK07399 75 VEPTYQ--HQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRP----P----LEAPRKVVVIEDAETMNEA----- 139 (314)
T ss_pred Eecccc--ccccccchhhhhhccccccccccCcHHHHHHHHHHHccC----c----ccCCceEEEEEchhhcCHH-----
Confidence 110000 00100 011124455554443321 1 1235789999999998653
Q ss_pred HHHHHHHHHhcCCCcEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHH
Q 009072 281 LRQCLLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQ 360 (544)
Q Consensus 281 ~~~~L~~~~~~~~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~ 360 (544)
..++|++.+++.+..+++++++ .. -..++++.+| |..+.|.+++.+++..+|.+....++. +..
T Consensus 140 aaNaLLK~LEEPp~~~fILi~~-~~----------~~Ll~TI~SR--cq~i~f~~l~~~~~~~~L~~~~~~~~~---~~~ 203 (314)
T PRK07399 140 AANALLKTLEEPGNGTLILIAP-SP----------ESLLPTIVSR--CQIIPFYRLSDEQLEQVLKRLGDEEIL---NIN 203 (314)
T ss_pred HHHHHHHHHhCCCCCeEEEEEC-Ch----------HhCcHHHHhh--ceEEecCCCCHHHHHHHHHHhhccccc---hhH
Confidence 3367888888877334444443 11 1223455554 999999999999999999987544332 223
Q ss_pred HHHHHHHcCCcHHHHHHHHHHh
Q 009072 361 IDLVAQASGGDIRQAITSLQFS 382 (544)
Q Consensus 361 l~~Ia~~s~GDiR~aIn~Lq~~ 382 (544)
+..++..++||+|.|++.++..
T Consensus 204 ~~~l~~~a~Gs~~~al~~l~~~ 225 (314)
T PRK07399 204 FPELLALAQGSPGAAIANIEQL 225 (314)
T ss_pred HHHHHHHcCCCHHHHHHHHHHH
Confidence 5788999999999999988754
No 89
>CHL00176 ftsH cell division protein; Validated
Probab=99.63 E-value=1e-14 Score=160.45 Aligned_cols=205 Identities=14% Similarity=0.175 Sum_probs=134.4
Q ss_pred CCCcchhccChHHHHHHHHHHHHhhcCCC----CCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCCchhhhhh
Q 009072 145 PRSLEELAVQRKKVEEVRAWFEERLGDSK----DKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIWQEY 220 (544)
Q Consensus 145 P~~~~dLv~~~~~~~~l~~wL~~~~~~~~----g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~~~~~~e~ 220 (544)
..+|+|++|.++..+++.+.+........ |...++.+||+||||||||++|+++|.+++.+++.++.++....
T Consensus 179 ~~~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~--- 255 (638)
T CHL00176 179 GITFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEM--- 255 (638)
T ss_pred CCCHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHH---
Confidence 36899999999998888887654322111 33344789999999999999999999999999998876652110
Q ss_pred hhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCch---------hHHHHHHHHHHHHHhc
Q 009072 221 MHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGR---------TAFERLRQCLLLLVRS 291 (544)
Q Consensus 221 l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~---------~~~~~~~~~L~~~~~~ 291 (544)
..|. ....++.++..+... .|+||+|||+|.+... .......+.|+..++.
T Consensus 256 ----~~g~----~~~~vr~lF~~A~~~------------~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg 315 (638)
T CHL00176 256 ----FVGV----GAARVRDLFKKAKEN------------SPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDG 315 (638)
T ss_pred ----hhhh----hHHHHHHHHHHHhcC------------CCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhcc
Confidence 1111 124566777776533 4889999999987321 1122223333333321
Q ss_pred --CCCcEEEEEccCCCCCCCCccccchHHHH-HHHhhc-CceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 009072 292 --THIPTAVVLTECGKADSVDSTAQSFEELQ-SILVDA-GARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQA 367 (544)
Q Consensus 292 --~~~piIiI~t~~~~~~~~d~~~~~l~~l~-~ll~r~-~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~l~~Ia~~ 367 (544)
....+++|++++. .+.+. +++++. ....|.|.+|+.++...+|+..+.... ..++..+..|+..
T Consensus 316 ~~~~~~ViVIaaTN~-----------~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~-~~~d~~l~~lA~~ 383 (638)
T CHL00176 316 FKGNKGVIVIAATNR-----------VDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKK-LSPDVSLELIARR 383 (638)
T ss_pred ccCCCCeeEEEecCc-----------hHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcc-cchhHHHHHHHhc
Confidence 2234555555422 12222 333321 146899999999999999998887633 2356678999998
Q ss_pred cCC----cHHHHHHHHHHhcc
Q 009072 368 SGG----DIRQAITSLQFSSL 384 (544)
Q Consensus 368 s~G----DiR~aIn~Lq~~~~ 384 (544)
+.| ||+.++|..-..+.
T Consensus 384 t~G~sgaDL~~lvneAal~a~ 404 (638)
T CHL00176 384 TPGFSGADLANLLNEAAILTA 404 (638)
T ss_pred CCCCCHHHHHHHHHHHHHHHH
Confidence 777 89999987655543
No 90
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.63 E-value=8.8e-15 Score=153.51 Aligned_cols=210 Identities=14% Similarity=0.158 Sum_probs=133.8
Q ss_pred ccccCCCCcchhccChHHHHHHHHHHHHhhcCC-----CCCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCCc
Q 009072 140 AEKYKPRSLEELAVQRKKVEEVRAWFEERLGDS-----KDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTP 214 (544)
Q Consensus 140 ~eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~-----~g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~~ 214 (544)
+...+..++++++|.+..++++++++......+ -|..+++.+||+||||||||++|+++|++++..++.+.+++.
T Consensus 122 ~~~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l 201 (389)
T PRK03992 122 VIESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSEL 201 (389)
T ss_pred ecCCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHH
Confidence 344556788999999999999999886654432 144555899999999999999999999999999999876542
Q ss_pred hhhhhhhhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchh------HHHHHHHHHHHH
Q 009072 215 TIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRT------AFERLRQCLLLL 288 (544)
Q Consensus 215 ~~~~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~------~~~~~~~~L~~~ 288 (544)
.. .........++.++..+... .|+||||||+|.+.... .-..++..+..+
T Consensus 202 ~~-----------~~~g~~~~~i~~~f~~a~~~------------~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~l 258 (389)
T PRK03992 202 VQ-----------KFIGEGARLVRELFELAREK------------APSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQL 258 (389)
T ss_pred hH-----------hhccchHHHHHHHHHHHHhc------------CCeEEEEechhhhhcccccCCCCccHHHHHHHHHH
Confidence 10 00111224455666655432 47899999999873210 001122223333
Q ss_pred H---hc--CCCcEEEEEccCCCCCCCCccccchHHH-HHHHh--hcCceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHH
Q 009072 289 V---RS--THIPTAVVLTECGKADSVDSTAQSFEEL-QSILV--DAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQ 360 (544)
Q Consensus 289 ~---~~--~~~piIiI~t~~~~~~~~d~~~~~l~~l-~~ll~--r~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~ 360 (544)
+ .. ...++++|++++.. ..+ .++++ |+ ...|.|++|+.++..++++..+....+. .+..
T Consensus 259 L~~ld~~~~~~~v~VI~aTn~~-----------~~ld~allRpgRf-d~~I~v~~P~~~~R~~Il~~~~~~~~~~-~~~~ 325 (389)
T PRK03992 259 LAEMDGFDPRGNVKIIAATNRI-----------DILDPAILRPGRF-DRIIEVPLPDEEGRLEILKIHTRKMNLA-DDVD 325 (389)
T ss_pred HHhccccCCCCCEEEEEecCCh-----------hhCCHHHcCCccC-ceEEEECCCCHHHHHHHHHHHhccCCCC-CcCC
Confidence 3 21 12345555554321 112 33333 22 4579999999999999999877654332 1234
Q ss_pred HHHHHHHcC----CcHHHHHHHHHHhccC
Q 009072 361 IDLVAQASG----GDIRQAITSLQFSSLK 385 (544)
Q Consensus 361 l~~Ia~~s~----GDiR~aIn~Lq~~~~~ 385 (544)
+..|+..+. +||+..++..-+.+..
T Consensus 326 ~~~la~~t~g~sgadl~~l~~eA~~~a~~ 354 (389)
T PRK03992 326 LEELAELTEGASGADLKAICTEAGMFAIR 354 (389)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 677777644 5888877766666543
No 91
>CHL00181 cbbX CbbX; Provisional
Probab=99.62 E-value=3.8e-14 Score=142.37 Aligned_cols=203 Identities=16% Similarity=0.154 Sum_probs=128.8
Q ss_pred hhccChHHHHHHHHHHHHhh----cCCCCCC---CccEEEEEcCCCCcHHHHHHHHHHHh---CC----eEEEEeCCCch
Q 009072 150 ELAVQRKKVEEVRAWFEERL----GDSKDKF---STNVLVITGQAGVGKTATVRQIASHL---GA----RLYEWDTPTPT 215 (544)
Q Consensus 150 dLv~~~~~~~~l~~wL~~~~----~~~~g~~---~~~~lLL~GPpG~GKTtla~~lA~el---g~----~viei~~s~~~ 215 (544)
+++|.+.++++|.+++.... ....|.. +..++||+||||||||++|+++|+.+ |+ ++++++.++..
T Consensus 24 ~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l~ 103 (287)
T CHL00181 24 ELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDLV 103 (287)
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHHH
Confidence 68899888887777653210 0001211 23579999999999999999999986 22 46666543210
Q ss_pred hhhhhhhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCch----hHHHHHHHHHHHHHhc
Q 009072 216 IWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGR----TAFERLRQCLLLLVRS 291 (544)
Q Consensus 216 ~~~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~----~~~~~~~~~L~~~~~~ 291 (544)
.. ..| ........+++.+ .+.||||||++.+... +.-...++.|..+++.
T Consensus 104 --~~-----~~g----~~~~~~~~~l~~a---------------~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~ 157 (287)
T CHL00181 104 --GQ-----YIG----HTAPKTKEVLKKA---------------MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMEN 157 (287)
T ss_pred --HH-----Hhc----cchHHHHHHHHHc---------------cCCEEEEEccchhccCCCccchHHHHHHHHHHHHhc
Confidence 00 011 0112233344432 1359999999987321 1123455677787776
Q ss_pred CCCcEEEEEccCCCCCCCCccccch-HHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH---
Q 009072 292 THIPTAVVLTECGKADSVDSTAQSF-EELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQA--- 367 (544)
Q Consensus 292 ~~~piIiI~t~~~~~~~~d~~~~~l-~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~l~~Ia~~--- 367 (544)
....+++|++++.. ....+ ...+++.+|+ ...|.|++++.+++..++...+.+.+..++++....++..
T Consensus 158 ~~~~~~vI~ag~~~------~~~~~~~~np~L~sR~-~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~ 230 (287)
T CHL00181 158 QRDDLVVIFAGYKD------RMDKFYESNPGLSSRI-ANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKK 230 (287)
T ss_pred CCCCEEEEEeCCcH------HHHHHHhcCHHHHHhC-CceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 65556666665321 00011 1114556664 6689999999999999999999999999998887766664
Q ss_pred -----cCCcHHHHHHHHHHhccC
Q 009072 368 -----SGGDIRQAITSLQFSSLK 385 (544)
Q Consensus 368 -----s~GDiR~aIn~Lq~~~~~ 385 (544)
.-|+.|.+.|.++.+...
T Consensus 231 ~~~~~~~GNaR~vrn~ve~~~~~ 253 (287)
T CHL00181 231 RMEQPLFANARSVRNALDRARMR 253 (287)
T ss_pred hCCCCCCccHHHHHHHHHHHHHH
Confidence 238899999988887754
No 92
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=8.9e-15 Score=150.49 Aligned_cols=207 Identities=17% Similarity=0.236 Sum_probs=136.4
Q ss_pred ccccCCCCcchhccChHHHHHHHHHHHHhhcCC------CCCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCC
Q 009072 140 AEKYKPRSLEELAVQRKKVEEVRAWFEERLGDS------KDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPT 213 (544)
Q Consensus 140 ~eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~------~g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~ 213 (544)
-++-.-.+|+|+.|-++..++|++.+.- +++| .|+.| +.+||+||||+|||.+||++|.|.+.+++....|.
T Consensus 295 p~~~~nv~F~dVkG~DEAK~ELeEiVef-LkdP~kftrLGGKLP-KGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSE 372 (752)
T KOG0734|consen 295 PEQMKNVTFEDVKGVDEAKQELEEIVEF-LKDPTKFTRLGGKLP-KGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSE 372 (752)
T ss_pred hhhhcccccccccChHHHHHHHHHHHHH-hcCcHHhhhccCcCC-CceEEeCCCCCchhHHHHHhhcccCCCeEeccccc
Confidence 3445567899999999888888876643 3332 26676 89999999999999999999999999999888776
Q ss_pred chhhhhhhhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhH---HHHHHHHHHHHH-
Q 009072 214 PTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTA---FERLRQCLLLLV- 289 (544)
Q Consensus 214 ~~~~~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~---~~~~~~~L~~~~- 289 (544)
..+. .-|.+ ...+++++..++.. .||||||||+|.+.+... ..-..+.|.+++
T Consensus 373 FdEm-------~VGvG----ArRVRdLF~aAk~~------------APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLv 429 (752)
T KOG0734|consen 373 FDEM-------FVGVG----ARRVRDLFAAAKAR------------APCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLV 429 (752)
T ss_pred hhhh-------hhccc----HHHHHHHHHHHHhc------------CCeEEEEechhhhcccCCccHHHHHHHHHHHHHH
Confidence 3221 22332 26788999888754 399999999999865321 111123344433
Q ss_pred ---hcCC-CcEEEEEccCCCCCCCCccccchHHHHHHHhhcC--ceeEEecCCCHHHHHHHHHHHHHHhCCCCC-HHHHH
Q 009072 290 ---RSTH-IPTAVVLTECGKADSVDSTAQSFEELQSILVDAG--ARKVALNPITNGSIKRTLSKICRQEQYSLS-TEQID 362 (544)
Q Consensus 290 ---~~~~-~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~--~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~-~~~l~ 362 (544)
.-.+ .++|+|.+++ ..+.|...|-|++ ...|..+.|+..-...+|...+.+ +..+ +-.+.
T Consensus 430 EmDGF~qNeGiIvigATN-----------fpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~k--i~~~~~VD~~ 496 (752)
T KOG0734|consen 430 EMDGFKQNEGIIVIGATN-----------FPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSK--IPLDEDVDPK 496 (752)
T ss_pred HhcCcCcCCceEEEeccC-----------ChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhc--CCcccCCCHh
Confidence 2222 2566665542 2233444444433 456778888888888888877655 3333 22355
Q ss_pred HHHHHc----CCcHHHHHHHHHHhcc
Q 009072 363 LVAQAS----GGDIRQAITSLQFSSL 384 (544)
Q Consensus 363 ~Ia~~s----~GDiR~aIn~Lq~~~~ 384 (544)
.||+.+ +-|+-..+|+.-..+.
T Consensus 497 iiARGT~GFsGAdLaNlVNqAAlkAa 522 (752)
T KOG0734|consen 497 IIARGTPGFSGADLANLVNQAALKAA 522 (752)
T ss_pred HhccCCCCCchHHHHHHHHHHHHHHH
Confidence 566664 4488888887665554
No 93
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.61 E-value=1.4e-14 Score=145.50 Aligned_cols=204 Identities=18% Similarity=0.159 Sum_probs=133.6
Q ss_pred hhccChHHHHHHHHHHHHhhc----CCCCCC---CccEEEEEcCCCCcHHHHHHHHHHHhC-------CeEEEEeCCCch
Q 009072 150 ELAVQRKKVEEVRAWFEERLG----DSKDKF---STNVLVITGQAGVGKTATVRQIASHLG-------ARLYEWDTPTPT 215 (544)
Q Consensus 150 dLv~~~~~~~~l~~wL~~~~~----~~~g~~---~~~~lLL~GPpG~GKTtla~~lA~elg-------~~viei~~s~~~ 215 (544)
+|+|.++.+++|.++...... ...|.. +..+++|+||||||||++|+++|+.+. .++++++.++..
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~ 102 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLV 102 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHh
Confidence 578888888877765432100 001221 335899999999999999999998762 257777654310
Q ss_pred hhhhhhhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCch----hHHHHHHHHHHHHHhc
Q 009072 216 IWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGR----TAFERLRQCLLLLVRS 291 (544)
Q Consensus 216 ~~~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~----~~~~~~~~~L~~~~~~ 291 (544)
. ...| .....+..+++++. +.||||||++.+... +.-...++.|.+.++.
T Consensus 103 ------~-~~~g----~~~~~~~~~~~~a~---------------~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~ 156 (284)
T TIGR02880 103 ------G-QYIG----HTAPKTKEILKRAM---------------GGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMEN 156 (284)
T ss_pred ------H-hhcc----cchHHHHHHHHHcc---------------CcEEEEechhhhccCCCccchHHHHHHHHHHHHhc
Confidence 0 0111 11133444554431 359999999977321 1123455678888877
Q ss_pred CCCcEEEEEccCCCCCCCCccccchHH-HHHHHhhcCceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH---
Q 009072 292 THIPTAVVLTECGKADSVDSTAQSFEE-LQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQA--- 367 (544)
Q Consensus 292 ~~~piIiI~t~~~~~~~~d~~~~~l~~-l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~l~~Ia~~--- 367 (544)
....+++|++++... ...+.. .+++.+|+ ...|.|++++.+++..++...+.+.+..++++++..+...
T Consensus 157 ~~~~~~vI~a~~~~~------~~~~~~~np~L~sR~-~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~ 229 (284)
T TIGR02880 157 QRDDLVVILAGYKDR------MDSFFESNPGFSSRV-AHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIAL 229 (284)
T ss_pred CCCCEEEEEeCCcHH------HHHHHhhCHHHHhhC-CcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHH
Confidence 666667776653210 001111 14555553 5689999999999999999999999889999999888775
Q ss_pred -----cCCcHHHHHHHHHHhccCC
Q 009072 368 -----SGGDIRQAITSLQFSSLKQ 386 (544)
Q Consensus 368 -----s~GDiR~aIn~Lq~~~~~~ 386 (544)
.-||+|.+-|.++.+....
T Consensus 230 ~~~~~~~GN~R~lrn~ve~~~~~~ 253 (284)
T TIGR02880 230 RRTQPHFANARSIRNAIDRARLRQ 253 (284)
T ss_pred hCCCCCCChHHHHHHHHHHHHHHH
Confidence 3499999999999887643
No 94
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.60 E-value=2.8e-14 Score=143.51 Aligned_cols=166 Identities=15% Similarity=0.136 Sum_probs=111.7
Q ss_pred CCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCCchhhhhhhhccccCcccccchHHHHHHHHHHHhhcCCCCC
Q 009072 174 DKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPS 253 (544)
Q Consensus 174 g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~~~~~~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~ 253 (544)
|..++++++|+||||||||.+|+++|+++|..++.+++++ ..+..+.+....+++.+..+.....
T Consensus 144 ~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~e-----------L~sk~vGEsEk~IR~~F~~A~~~a~---- 208 (413)
T PLN00020 144 NIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGE-----------LESENAGEPGKLIRQRYREAADIIK---- 208 (413)
T ss_pred CCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHH-----------hhcCcCCcHHHHHHHHHHHHHHHhh----
Confidence 3444599999999999999999999999999999999875 2233445666888999988865421
Q ss_pred CCCCCCCceEEEEecCCCCCchh-----H-HHHHH-HHHHHHHh--------------cCCCcEEEEEccCCCCCCCCcc
Q 009072 254 IPGESKSSAILLIDDLPVTNGRT-----A-FERLR-QCLLLLVR--------------STHIPTAVVLTECGKADSVDST 312 (544)
Q Consensus 254 ~~~~~~~~~vIlIDEid~l~~~~-----~-~~~~~-~~L~~~~~--------------~~~~piIiI~t~~~~~~~~d~~ 312 (544)
...+|+||+|||||.+.++. . -.++. ..|+.+++ ....++++|++++.
T Consensus 209 ---~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNr-------- 277 (413)
T PLN00020 209 ---KKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGND-------- 277 (413)
T ss_pred ---ccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCC--------
Confidence 12469999999999774421 1 12232 34444432 12233555555421
Q ss_pred ccchHHH-HHHHhhcCceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCc
Q 009072 313 AQSFEEL-QSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGD 371 (544)
Q Consensus 313 ~~~l~~l-~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~l~~Ia~~s~GD 371 (544)
...| .++++..|... .|..|+.++...+|+.+++..+ ++...+..|+....|-
T Consensus 278 ---pd~LDpALlRpGRfDk-~i~lPd~e~R~eIL~~~~r~~~--l~~~dv~~Lv~~f~gq 331 (413)
T PLN00020 278 ---FSTLYAPLIRDGRMEK-FYWAPTREDRIGVVHGIFRDDG--VSREDVVKLVDTFPGQ 331 (413)
T ss_pred ---cccCCHhHcCCCCCCc-eeCCCCHHHHHHHHHHHhccCC--CCHHHHHHHHHcCCCC
Confidence 1222 34444323444 3568999999999998887765 6688899999987763
No 95
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.60 E-value=2.8e-14 Score=145.88 Aligned_cols=190 Identities=13% Similarity=0.189 Sum_probs=129.6
Q ss_pred CcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCCchhhhhhhhcccc
Q 009072 147 SLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIWQEYMHNCKT 226 (544)
Q Consensus 147 ~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~~~~~~e~l~~~~~ 226 (544)
+|+|++|++..++.+..++.. |+.+ +.+||+||+|+|||++|+.+|+.+.+....-+.||...+.. ..
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~------~~~~-ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~-----~~ 69 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIK------NRFS-HAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKP-----IN 69 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHc------CCCC-ceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecc-----cc
Confidence 588999999999999999865 6665 78999999999999999999998754321112222111100 01
Q ss_pred CcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHHHHHhcCCCcEEEEEccCCCC
Q 009072 227 GLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPTAVVLTECGKA 306 (544)
Q Consensus 227 g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~~~~~~~~piIiI~t~~~~~ 306 (544)
|. .-..+.+++..+.+...+ ..+.++|+|||++|.++.. ..++|++.+++.+..+++|..+.+.
T Consensus 70 ~~--~i~v~~ir~~~~~~~~~p--------~~~~~kv~iI~~ad~m~~~-----a~naLLK~LEepp~~t~~il~~~~~- 133 (313)
T PRK05564 70 KK--SIGVDDIRNIIEEVNKKP--------YEGDKKVIIIYNSEKMTEQ-----AQNAFLKTIEEPPKGVFIILLCENL- 133 (313)
T ss_pred CC--CCCHHHHHHHHHHHhcCc--------ccCCceEEEEechhhcCHH-----HHHHHHHHhcCCCCCeEEEEEeCCh-
Confidence 11 112356777766553222 1135789999999998653 3467888888876545555443211
Q ss_pred CCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHH
Q 009072 307 DSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIRQAITSL 379 (544)
Q Consensus 307 ~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~l~~Ia~~s~GDiR~aIn~L 379 (544)
. ..++++.+| |..+.|.+++.+++...|.+... .++++.++.++..++|.+..|+..+
T Consensus 134 ------~---~ll~TI~SR--c~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~l~~~~~g~~~~a~~~~ 191 (313)
T PRK05564 134 ------E---QILDTIKSR--CQIYKLNRLSKEEIEKFISYKYN----DIKEEEKKSAIAFSDGIPGKVEKFI 191 (313)
T ss_pred ------H---hCcHHHHhh--ceeeeCCCcCHHHHHHHHHHHhc----CCCHHHHHHHHHHcCCCHHHHHHHh
Confidence 1 122444444 99999999999999998876532 4678889999999999998887543
No 96
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.59 E-value=9.9e-14 Score=134.96 Aligned_cols=189 Identities=12% Similarity=0.146 Sum_probs=121.0
Q ss_pred CCCcchhc--cChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeCCCchhhhh
Q 009072 145 PRSLEELA--VQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTPTPTIWQE 219 (544)
Q Consensus 145 P~~~~dLv--~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~el---g~~viei~~s~~~~~~e 219 (544)
|.++++++ ++...++.++.|+..+ . .+.++|+||||||||++|+.+++++ +.+++.++++...
T Consensus 11 ~~~~~~~~~~~~~~~~~~l~~~~~~~------~--~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~---- 78 (226)
T TIGR03420 11 DPTFDNFYAGGNAELLAALRQLAAGK------G--DRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELA---- 78 (226)
T ss_pred chhhcCcCcCCcHHHHHHHHHHHhcC------C--CCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHH----
Confidence 34566666 3566888888886531 1 2689999999999999999999886 4566666543210
Q ss_pred hhhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchh-HHHHHHHHHHHHHhcCCCcEEE
Q 009072 220 YMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRT-AFERLRQCLLLLVRSTHIPTAV 298 (544)
Q Consensus 220 ~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~-~~~~~~~~L~~~~~~~~~piIi 298 (544)
.....++... .+..+|+|||++.+.... ....+...+....... . .++
T Consensus 79 ---------------~~~~~~~~~~--------------~~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~-~-~iI 127 (226)
T TIGR03420 79 ---------------QADPEVLEGL--------------EQADLVCLDDVEAIAGQPEWQEALFHLYNRVREAG-G-RLL 127 (226)
T ss_pred ---------------HhHHHHHhhc--------------ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcC-C-eEE
Confidence 0011222211 124599999999886532 1223333333333322 2 333
Q ss_pred EEccCCCCCCCCccccchHHHHHHHhhc-CceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHH
Q 009072 299 VLTECGKADSVDSTAQSFEELQSILVDA-GARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIRQAIT 377 (544)
Q Consensus 299 I~t~~~~~~~~d~~~~~l~~l~~ll~r~-~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~l~~Ia~~s~GDiR~aIn 377 (544)
++++..... ..... ..+.++. .+..|.++|++.+++..++...+.+.++.+++++++.|+..++||+|.+.+
T Consensus 128 its~~~~~~----~~~~~---~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~~~gn~r~L~~ 200 (226)
T TIGR03420 128 IAGRAAPAQ----LPLRL---PDLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRHGSRDMGSLMA 200 (226)
T ss_pred EECCCChHH----CCccc---HHHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHHHHH
Confidence 443321100 00011 2233332 156899999999999999999988889999999999999999999999998
Q ss_pred HHHHhc
Q 009072 378 SLQFSS 383 (544)
Q Consensus 378 ~Lq~~~ 383 (544)
.|+..-
T Consensus 201 ~l~~~~ 206 (226)
T TIGR03420 201 LLDALD 206 (226)
T ss_pred HHHHHH
Confidence 876643
No 97
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=9.7e-15 Score=154.65 Aligned_cols=271 Identities=14% Similarity=0.159 Sum_probs=165.7
Q ss_pred ccccccccCCccCccccccccccccccccccCCCCCChhhhhhhhhhhhhccCcccccCCCCCCCCCCCcCCCCCCCccc
Q 009072 62 HFLTPSRFEGLVNPKRDLALGSSSRQQLWTNKNKPCSLEEHAIQKENVGRFLTPSRFEGLVNPDHDSASASSSTQQLWAE 141 (544)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ed~~~~l~~~~i~~~~~~~~~~~~~~~~~~~lW~e 141 (544)
+..++..|.||...+....+.-|..... .++.|.-.. .++-++|...+.. .....-++ +.
T Consensus 598 Ld~ls~~TEGy~~~DL~ifVeRai~~a~---leris~~~k-lltke~f~ksL~~--F~P~aLR~--------------ik 657 (952)
T KOG0735|consen 598 LDFLSVKTEGYLATDLVIFVERAIHEAF---LERISNGPK-LLTKELFEKSLKD--FVPLALRG--------------IK 657 (952)
T ss_pred HHHHHHhcCCccchhHHHHHHHHHHHHH---HHHhccCcc-cchHHHHHHHHHh--cChHHhhh--------------cc
Confidence 3348999999999987765554433331 111111111 4555666665551 10011110 01
Q ss_pred ccCC--CCcchhccChHHHHHHHHHHHHhhcCCC-----CCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCCc
Q 009072 142 KYKP--RSLEELAVQRKKVEEVRAWFEERLGDSK-----DKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTP 214 (544)
Q Consensus 142 ky~P--~~~~dLv~~~~~~~~l~~wL~~~~~~~~-----g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~~ 214 (544)
..++ -.+.|+.|-.+.++-+++.++...+.+. +...+..+|||||||||||.+|.++|...+..++.+.+|..
T Consensus 658 ~~k~tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPEl 737 (952)
T KOG0735|consen 658 LVKSTGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPEL 737 (952)
T ss_pred ccccCCCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHH
Confidence 1111 3678888888777777776654433321 22223689999999999999999999999999999998862
Q ss_pred hhhhhhhhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCch------hHHHHHHH-HHHH
Q 009072 215 TIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGR------TAFERLRQ-CLLL 287 (544)
Q Consensus 215 ~~~~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~------~~~~~~~~-~L~~ 287 (544)
..+++ ..+...++++++++... +|||+|+||+|.+..+ +...|+.+ .|.+
T Consensus 738 --L~KyI---------GaSEq~vR~lF~rA~~a------------~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTe 794 (952)
T KOG0735|consen 738 --LSKYI---------GASEQNVRDLFERAQSA------------KPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTE 794 (952)
T ss_pred --HHHHh---------cccHHHHHHHHHHhhcc------------CCeEEEeccccccCcccCCCCCCchHHHHHHHHHh
Confidence 11222 22346789999988643 5999999999988442 23567764 4444
Q ss_pred HHhcCCCcEEEEEccCCCCCCCCccccchHHHHHHHhhcC-ceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 009072 288 LVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAG-ARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQ 366 (544)
Q Consensus 288 ~~~~~~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~-~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~l~~Ia~ 366 (544)
+.......-|+|++.+...+..| +++|+..| ...+..+.|+..+...+|+.+.... ..-++..++-+|.
T Consensus 795 lDG~Egl~GV~i~aaTsRpdliD---------pALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~-~~~~~vdl~~~a~ 864 (952)
T KOG0735|consen 795 LDGAEGLDGVYILAATSRPDLID---------PALLRPGRLDKLVYCPLPDEPERLEILQVLSNSL-LKDTDVDLECLAQ 864 (952)
T ss_pred hccccccceEEEEEecCCccccC---------HhhcCCCccceeeeCCCCCcHHHHHHHHHHhhcc-CCccccchHHHhh
Confidence 43322223334433333222211 34444333 3456778888888888888765543 2334666888888
Q ss_pred HcC----CcHHHHHHHHHHhccC
Q 009072 367 ASG----GDIRQAITSLQFSSLK 385 (544)
Q Consensus 367 ~s~----GDiR~aIn~Lq~~~~~ 385 (544)
.+. .|+...+.+.|+.+..
T Consensus 865 ~T~g~tgADlq~ll~~A~l~avh 887 (952)
T KOG0735|consen 865 KTDGFTGADLQSLLYNAQLAAVH 887 (952)
T ss_pred hcCCCchhhHHHHHHHHHHHHHH
Confidence 755 4899999888888753
No 98
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.59 E-value=1.8e-13 Score=133.42 Aligned_cols=186 Identities=12% Similarity=0.160 Sum_probs=122.1
Q ss_pred CCCCcchhc--cChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeCCCchhhh
Q 009072 144 KPRSLEELA--VQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTPTPTIWQ 218 (544)
Q Consensus 144 ~P~~~~dLv--~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~el---g~~viei~~s~~~~~~ 218 (544)
+|.++++++ .+...+..++.|... ....+.++|+||+|+|||++|+++++++ +..++.+++...
T Consensus 13 ~~~~~d~f~~~~~~~~~~~l~~~~~~-------~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~---- 81 (227)
T PRK08903 13 PPPTFDNFVAGENAELVARLRELAAG-------PVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASP---- 81 (227)
T ss_pred ChhhhcccccCCcHHHHHHHHHHHhc-------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHh----
Confidence 456788877 345566666666542 1122689999999999999999999986 556666554321
Q ss_pred hhhhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHHHHHhcCCCcEEE
Q 009072 219 EYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPTAV 298 (544)
Q Consensus 219 e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~~~~~~~~piIi 298 (544)
...+ . + .....+|+|||++.+.... ...+...+....+ ...++++
T Consensus 82 -------------------~~~~---~-~----------~~~~~~liiDdi~~l~~~~-~~~L~~~~~~~~~-~~~~~vl 126 (227)
T PRK08903 82 -------------------LLAF---D-F----------DPEAELYAVDDVERLDDAQ-QIALFNLFNRVRA-HGQGALL 126 (227)
T ss_pred -------------------HHHH---h-h----------cccCCEEEEeChhhcCchH-HHHHHHHHHHHHH-cCCcEEE
Confidence 0001 0 1 0124589999999886532 2233333333323 2333455
Q ss_pred EEccCCCCCCCCccccchHHHHHHHhhc-CceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHH
Q 009072 299 VLTECGKADSVDSTAQSFEELQSILVDA-GARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIRQAIT 377 (544)
Q Consensus 299 I~t~~~~~~~~d~~~~~l~~l~~ll~r~-~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~l~~Ia~~s~GDiR~aIn 377 (544)
++++... . ...+ ...+.+|+ ++..+.++|++......+|.+++..+++.+++++++.|+..+.||+|.+++
T Consensus 127 ~~~~~~~-----~-~~~l--~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~gn~~~l~~ 198 (227)
T PRK08903 127 VAGPAAP-----L-ALPL--REDLRTRLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFRRDMPSLMA 198 (227)
T ss_pred EeCCCCH-----H-hCCC--CHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHHHHH
Confidence 5544221 0 1111 12333332 257999999999999999999999999999999999999999999999888
Q ss_pred HHHHhc
Q 009072 378 SLQFSS 383 (544)
Q Consensus 378 ~Lq~~~ 383 (544)
.|+.+.
T Consensus 199 ~l~~l~ 204 (227)
T PRK08903 199 LLDALD 204 (227)
T ss_pred HHHHHH
Confidence 888764
No 99
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.58 E-value=2e-14 Score=162.39 Aligned_cols=211 Identities=19% Similarity=0.241 Sum_probs=148.6
Q ss_pred CCCCcccccCCCCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHh----------CC
Q 009072 135 TQQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL----------GA 204 (544)
Q Consensus 135 ~~~lW~eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~el----------g~ 204 (544)
....++++.+|..+++++|+++.++++...|... . .+++||+||||||||++|+.+|+.+ +.
T Consensus 168 ~~~~l~~~~r~~~l~~~igr~~ei~~~~~~L~~~------~--~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~ 239 (731)
T TIGR02639 168 YTVDLTEKAKNGKIDPLIGREDELERTIQVLCRR------K--KNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNA 239 (731)
T ss_pred HhhhHHHHHhcCCCCcccCcHHHHHHHHHHHhcC------C--CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCC
Confidence 3457888899999999999999999888777542 1 2679999999999999999999987 66
Q ss_pred eEEEEeCCCchhhhhhhhccccCccc-ccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchh----HHH
Q 009072 205 RLYEWDTPTPTIWQEYMHNCKTGLEY-TSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRT----AFE 279 (544)
Q Consensus 205 ~viei~~s~~~~~~e~l~~~~~g~~~-~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~----~~~ 279 (544)
.++.++... ...|..+ ......++.+++.+... .+.||||||++.+.+.. .-.
T Consensus 240 ~~~~~~~~~----------l~a~~~~~g~~e~~l~~i~~~~~~~------------~~~ILfiDEih~l~~~g~~~~~~~ 297 (731)
T TIGR02639 240 KIYSLDMGS----------LLAGTKYRGDFEERLKAVVSEIEKE------------PNAILFIDEIHTIVGAGATSGGSM 297 (731)
T ss_pred eEEEecHHH----------HhhhccccchHHHHHHHHHHHHhcc------------CCeEEEEecHHHHhccCCCCCccH
Confidence 666665322 1222222 23335667777766432 36799999999874321 011
Q ss_pred HHHHHHHHHHhcCCCcEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHH----hCCC
Q 009072 280 RLRQCLLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQ----EQYS 355 (544)
Q Consensus 280 ~~~~~L~~~~~~~~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~----e~~~ 355 (544)
...+.|...+..+ .+.+|.+++. ..+.+.++..+++.+| +..|.+.+|+.+++.++|+.+... .++.
T Consensus 298 ~~~~~L~~~l~~g--~i~~IgaTt~-----~e~~~~~~~d~al~rR--f~~i~v~~p~~~~~~~il~~~~~~~e~~~~v~ 368 (731)
T TIGR02639 298 DASNLLKPALSSG--KLRCIGSTTY-----EEYKNHFEKDRALSRR--FQKIDVGEPSIEETVKILKGLKEKYEEFHHVK 368 (731)
T ss_pred HHHHHHHHHHhCC--CeEEEEecCH-----HHHHHHhhhhHHHHHh--CceEEeCCCCHHHHHHHHHHHHHHHHhccCcc
Confidence 2446677777655 4556655432 1223334444566565 678999999999999999987765 3567
Q ss_pred CCHHHHHHHHHHcCC---c---HHHHHHHHHHhcc
Q 009072 356 LSTEQIDLVAQASGG---D---IRQAITSLQFSSL 384 (544)
Q Consensus 356 i~~~~l~~Ia~~s~G---D---iR~aIn~Lq~~~~ 384 (544)
++++++..++..++. | .++||..|.-++.
T Consensus 369 i~~~al~~~~~ls~ryi~~r~~P~kai~lld~a~a 403 (731)
T TIGR02639 369 YSDEALEAAVELSARYINDRFLPDKAIDVIDEAGA 403 (731)
T ss_pred cCHHHHHHHHHhhhcccccccCCHHHHHHHHHhhh
Confidence 999999999998865 3 6788998877664
No 100
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.58 E-value=7.4e-14 Score=132.03 Aligned_cols=170 Identities=18% Similarity=0.208 Sum_probs=104.3
Q ss_pred CCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCCch--hhhhhhhcc------ccCcccccchHHHHHHHHHHH
Q 009072 174 DKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPT--IWQEYMHNC------KTGLEYTSKLDEFENFVERIR 245 (544)
Q Consensus 174 g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~~~--~~~e~l~~~------~~g~~~~s~~~~~~~~l~~~~ 245 (544)
++.+ +.+||+||+|+|||++|+.+++.+...--.-..+... ......... ..........+.++.+++.+.
T Consensus 11 ~~~~-~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~ 89 (188)
T TIGR00678 11 GRLA-HAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIKVDQVRELVEFLS 89 (188)
T ss_pred CCCC-eEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCCHHHHHHHHHHHc
Confidence 5554 7899999999999999999999985430000000000 000000000 000000112356666676654
Q ss_pred hhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHHHHHhcCCCcEEEEEccCCCCCCCCccccchHHHHHHHhh
Q 009072 246 RYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVD 325 (544)
Q Consensus 246 ~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~~~~~~~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r 325 (544)
..+. ...++||||||++.+... .++.|+.+++..+...++|+..... ...++++.+|
T Consensus 90 ~~~~--------~~~~kviiide~~~l~~~-----~~~~Ll~~le~~~~~~~~il~~~~~----------~~l~~~i~sr 146 (188)
T TIGR00678 90 RTPQ--------ESGRRVVIIEDAERMNEA-----AANALLKTLEEPPPNTLFILITPSP----------EKLLPTIRSR 146 (188)
T ss_pred cCcc--------cCCeEEEEEechhhhCHH-----HHHHHHHHhcCCCCCeEEEEEECCh----------HhChHHHHhh
Confidence 3321 135779999999998653 2356777777754333333332111 1113444444
Q ss_pred cCceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHH
Q 009072 326 AGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIRQA 375 (544)
Q Consensus 326 ~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~l~~Ia~~s~GDiR~a 375 (544)
|..+.|.|++.+++.++|.+. | +++++++.|++.++||+|.|
T Consensus 147 --~~~~~~~~~~~~~~~~~l~~~----g--i~~~~~~~i~~~~~g~~r~~ 188 (188)
T TIGR00678 147 --CQVLPFPPLSEEALLQWLIRQ----G--ISEEAAELLLALAGGSPGAA 188 (188)
T ss_pred --cEEeeCCCCCHHHHHHHHHHc----C--CCHHHHHHHHHHcCCCcccC
Confidence 889999999999999998875 4 78999999999999999975
No 101
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=2.8e-14 Score=142.09 Aligned_cols=200 Identities=16% Similarity=0.223 Sum_probs=133.2
Q ss_pred CCcchhccChHHHHHHHHHHHHhhcCCC----C--CCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCCchhhhh
Q 009072 146 RSLEELAVQRKKVEEVRAWFEERLGDSK----D--KFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIWQE 219 (544)
Q Consensus 146 ~~~~dLv~~~~~~~~l~~wL~~~~~~~~----g--~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~~~~~~e 219 (544)
.+|+|+.|-+..++++++.+.-....++ | ..|++.+||+||||||||.+|+++|++.|..++-+..+...
T Consensus 89 v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt---- 164 (386)
T KOG0737|consen 89 VSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLT---- 164 (386)
T ss_pred eehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccc----
Confidence 5889999999999999998766544322 1 12448999999999999999999999999999988766522
Q ss_pred hhhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCc------hhHHHHHHH-HHHHHH--h
Q 009072 220 YMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNG------RTAFERLRQ-CLLLLV--R 290 (544)
Q Consensus 220 ~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~------~~~~~~~~~-~L~~~~--~ 290 (544)
+.++....+-...++.-+.+. .|+||+|||+|.+.+ ..+.....+ .+..+- .
T Consensus 165 -------~KWfgE~eKlv~AvFslAsKl------------~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~ 225 (386)
T KOG0737|consen 165 -------SKWFGEAQKLVKAVFSLASKL------------QPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLS 225 (386)
T ss_pred -------hhhHHHHHHHHHHHHhhhhhc------------CcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhcccc
Confidence 234444444444455444433 489999999997632 122222211 111111 1
Q ss_pred cCCCcEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC
Q 009072 291 STHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGG 370 (544)
Q Consensus 291 ~~~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~l~~Ia~~s~G 370 (544)
+...-.|++.+.++ +..+...++++|. +..++.+-|+..+..++|+-++..|.+. ++-.+..|+..+.|
T Consensus 226 s~~~~rVlVlgATN---------RP~DlDeAiiRR~-p~rf~V~lP~~~qR~kILkviLk~e~~e-~~vD~~~iA~~t~G 294 (386)
T KOG0737|consen 226 SKDSERVLVLGATN---------RPFDLDEAIIRRL-PRRFHVGLPDAEQRRKILKVILKKEKLE-DDVDLDEIAQMTEG 294 (386)
T ss_pred CCCCceEEEEeCCC---------CCccHHHHHHHhC-cceeeeCCCchhhHHHHHHHHhcccccC-cccCHHHHHHhcCC
Confidence 12222355554433 3344446777875 8999999999999999999999998865 45557778888666
Q ss_pred cHHHHHHHH
Q 009072 371 DIRQAITSL 379 (544)
Q Consensus 371 DiR~aIn~L 379 (544)
-=.+-|-.|
T Consensus 295 ySGSDLkel 303 (386)
T KOG0737|consen 295 YSGSDLKEL 303 (386)
T ss_pred CcHHHHHHH
Confidence 433333333
No 102
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=3.7e-14 Score=133.73 Aligned_cols=206 Identities=17% Similarity=0.223 Sum_probs=130.1
Q ss_pred CCCcchhccChHHHHHHHHHHHHhhcCC-----CCCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCCchhhhh
Q 009072 145 PRSLEELAVQRKKVEEVRAWFEERLGDS-----KDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIWQE 219 (544)
Q Consensus 145 P~~~~dLv~~~~~~~~l~~wL~~~~~~~-----~g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~~~~~~e 219 (544)
-.++.|+.|-+-..+++++.++..+... -|--|++.+|+|||||||||++|+++|++....++.++++.. .++
T Consensus 151 dvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsef--vqk 228 (408)
T KOG0727|consen 151 DVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEF--VQK 228 (408)
T ss_pred CccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHH--HHH
Confidence 3689999999999999999876544321 155566999999999999999999999999999999998752 233
Q ss_pred hhhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCch------hHHHHHHHHHHHHHhc--
Q 009072 220 YMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGR------TAFERLRQCLLLLVRS-- 291 (544)
Q Consensus 220 ~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~------~~~~~~~~~L~~~~~~-- 291 (544)
+++. | ....++++.-++.. .|.||||||+|.+... ++-+.++..|.+++..
T Consensus 229 ylge---g------prmvrdvfrlaken------------apsiifideidaiatkrfdaqtgadrevqril~ellnqmd 287 (408)
T KOG0727|consen 229 YLGE---G------PRMVRDVFRLAKEN------------APSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMD 287 (408)
T ss_pred Hhcc---C------cHHHHHHHHHHhcc------------CCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhcc
Confidence 3322 2 14566777655433 4889999999987322 1223344445554432
Q ss_pred ----CCCcEEEEEccCCCCCCCCccccchHHHHHHHhhcC-ceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHH-
Q 009072 292 ----THIPTAVVLTECGKADSVDSTAQSFEELQSILVDAG-ARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVA- 365 (544)
Q Consensus 292 ----~~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~-~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~l~~Ia- 365 (544)
+..--|+++|+...+ .| +++|+..| ...|+|+.|+..+-+-+...|+.+..+.-+ ..++.++
T Consensus 288 gfdq~~nvkvimatnradt--ld---------pallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~-vdle~~v~ 355 (408)
T KOG0727|consen 288 GFDQTTNVKVIMATNRADT--LD---------PALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDE-VDLEDLVA 355 (408)
T ss_pred CcCcccceEEEEecCcccc--cC---------HhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcc-cCHHHHhc
Confidence 112245555543211 11 22222211 457999999998888888888887654322 1233333
Q ss_pred ---HHcCCcHHHHHHHHHHhccC
Q 009072 366 ---QASGGDIRQAITSLQFSSLK 385 (544)
Q Consensus 366 ---~~s~GDiR~aIn~Lq~~~~~ 385 (544)
..|+.||-+.....-+.+.+
T Consensus 356 rpdkis~adi~aicqeagm~avr 378 (408)
T KOG0727|consen 356 RPDKISGADINAICQEAGMLAVR 378 (408)
T ss_pred CccccchhhHHHHHHHHhHHHHH
Confidence 23555666555544454443
No 103
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.57 E-value=4.4e-14 Score=147.45 Aligned_cols=210 Identities=16% Similarity=0.197 Sum_probs=129.4
Q ss_pred ccccCCCCcchhccChHHHHHHHHHHHHhhcCCC-----CCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCCc
Q 009072 140 AEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSK-----DKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTP 214 (544)
Q Consensus 140 ~eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~-----g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~~ 214 (544)
+++.+..+++|+.|.++.++++++++......+. |..+++.+||+||||||||++|+++|++++..++.+..+..
T Consensus 113 ~~~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l 192 (364)
T TIGR01242 113 VEERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSEL 192 (364)
T ss_pred eccCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHH
Confidence 4566778999999999999999999876544322 33445889999999999999999999999999888764431
Q ss_pred hhhhhhhhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCch---------hHHHH-HHHH
Q 009072 215 TIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGR---------TAFER-LRQC 284 (544)
Q Consensus 215 ~~~~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~---------~~~~~-~~~~ 284 (544)
. ..+ .......++.++..+.. ..|.||+|||+|.+... ....+ +.+.
T Consensus 193 ~--~~~---------~g~~~~~i~~~f~~a~~------------~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~l 249 (364)
T TIGR01242 193 V--RKY---------IGEGARLVREIFELAKE------------KAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQL 249 (364)
T ss_pred H--HHh---------hhHHHHHHHHHHHHHHh------------cCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHH
Confidence 1 000 01112334455554432 24789999999987321 11111 2222
Q ss_pred HHHHHhc-CCCcEEEEEccCCCCCCCCccccchHHH-HHHHhhcC-ceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHH
Q 009072 285 LLLLVRS-THIPTAVVLTECGKADSVDSTAQSFEEL-QSILVDAG-ARKVALNPITNGSIKRTLSKICRQEQYSLSTEQI 361 (544)
Q Consensus 285 L~~~~~~-~~~piIiI~t~~~~~~~~d~~~~~l~~l-~~ll~r~~-~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~l 361 (544)
|..+-.. ...++++|++++.. ..+ +++++..+ ...|.|++|+.++...+++..+....+. ++..+
T Consensus 250 l~~ld~~~~~~~v~vI~ttn~~-----------~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~-~~~~~ 317 (364)
T TIGR01242 250 LAELDGFDPRGNVKVIAATNRP-----------DILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLA-EDVDL 317 (364)
T ss_pred HHHhhCCCCCCCEEEEEecCCh-----------hhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCC-ccCCH
Confidence 2222111 12345555554321 112 23332111 4579999999999999998776543322 11346
Q ss_pred HHHHHHcC----CcHHHHHHHHHHhcc
Q 009072 362 DLVAQASG----GDIRQAITSLQFSSL 384 (544)
Q Consensus 362 ~~Ia~~s~----GDiR~aIn~Lq~~~~ 384 (544)
..|+..+. +||+.++...-+.+.
T Consensus 318 ~~la~~t~g~sg~dl~~l~~~A~~~a~ 344 (364)
T TIGR01242 318 EAIAKMTEGASGADLKAICTEAGMFAI 344 (364)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 66666654 478877776665554
No 104
>PRK05642 DNA replication initiation factor; Validated
Probab=99.57 E-value=2.5e-13 Score=132.78 Aligned_cols=193 Identities=13% Similarity=0.175 Sum_probs=121.1
Q ss_pred CcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeCCCchhhhhhhhc
Q 009072 147 SLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTPTPTIWQEYMHN 223 (544)
Q Consensus 147 ~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~el---g~~viei~~s~~~~~~e~l~~ 223 (544)
+|++++... ......+++.|.... +....+.++|+||+|+|||++++++++++ +..++.++..+..
T Consensus 17 tfdnF~~~~--~~~a~~~~~~~~~~~-~~~~~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~-------- 85 (234)
T PRK05642 17 TFANYYPGA--NAAALGYVERLCEAD-AGWTESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELL-------- 85 (234)
T ss_pred cccccCcCC--hHHHHHHHHHHhhcc-ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHH--------
Confidence 566655332 233445555443211 11122679999999999999999999865 5566655532200
Q ss_pred cccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHH-HHHHHHHHHHHhcCCCcEEEEEcc
Q 009072 224 CKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAF-ERLRQCLLLLVRSTHIPTAVVLTE 302 (544)
Q Consensus 224 ~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~-~~~~~~L~~~~~~~~~piIiI~t~ 302 (544)
.....+++.... ..+++|||++.+.+.... ..+...+..+.+.++ .++++++
T Consensus 86 -----------~~~~~~~~~~~~--------------~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~--~ilits~ 138 (234)
T PRK05642 86 -----------DRGPELLDNLEQ--------------YELVCLDDLDVIAGKADWEEALFHLFNRLRDSGR--RLLLAAS 138 (234)
T ss_pred -----------hhhHHHHHhhhh--------------CCEEEEechhhhcCChHHHHHHHHHHHHHHhcCC--EEEEeCC
Confidence 001123332221 238999999987553222 234455555444432 3555555
Q ss_pred CCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHh
Q 009072 303 CGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIRQAITSLQFS 382 (544)
Q Consensus 303 ~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~l~~Ia~~s~GDiR~aIn~Lq~~ 382 (544)
..+.. .......+.+.+.. ...+.+.+|+.+++..+|+..+...++.+++++++.|++.+.||+|.+++.|+.+
T Consensus 139 ~~p~~----l~~~~~~L~SRl~~--gl~~~l~~~~~e~~~~il~~ka~~~~~~l~~ev~~~L~~~~~~d~r~l~~~l~~l 212 (234)
T PRK05642 139 KSPRE----LPIKLPDLKSRLTL--ALVFQMRGLSDEDKLRALQLRASRRGLHLTDEVGHFILTRGTRSMSALFDLLERL 212 (234)
T ss_pred CCHHH----cCccCccHHHHHhc--CeeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 43211 11112334443332 4789999999999999999888888999999999999999999999999988877
Q ss_pred c
Q 009072 383 S 383 (544)
Q Consensus 383 ~ 383 (544)
.
T Consensus 213 ~ 213 (234)
T PRK05642 213 D 213 (234)
T ss_pred H
Confidence 4
No 105
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=2.1e-13 Score=140.91 Aligned_cols=218 Identities=17% Similarity=0.292 Sum_probs=141.0
Q ss_pred CcccccCCCCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhCCe-----EEEEeCC
Q 009072 138 LWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGAR-----LYEWDTP 212 (544)
Q Consensus 138 lW~eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~-----viei~~s 212 (544)
..-+-|-|.. +.+++..++++...|..+.. |..| .+++++||||||||++++.+++++.-. ++.+|+.
T Consensus 9 vl~~~~iP~~---l~~Re~ei~~l~~~l~~~~~---~~~p-~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~ 81 (366)
T COG1474 9 VLLEDYIPEE---LPHREEEINQLASFLAPALR---GERP-SNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCL 81 (366)
T ss_pred ccCCCCCccc---ccccHHHHHHHHHHHHHHhc---CCCC-ccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeee
Confidence 3455677765 79999999999999998876 4444 569999999999999999999998433 7888887
Q ss_pred Cchhhhhhhhcc--------ccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHH
Q 009072 213 TPTIWQEYMHNC--------KTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQC 284 (544)
Q Consensus 213 ~~~~~~e~l~~~--------~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~ 284 (544)
........+..+ ..|. +..+.+..+.+..... ....||++||+|.+..... .++-.
T Consensus 82 ~~~t~~~i~~~i~~~~~~~p~~g~---~~~~~~~~l~~~~~~~-----------~~~~IvvLDEid~L~~~~~--~~LY~ 145 (366)
T COG1474 82 ELRTPYQVLSKILNKLGKVPLTGD---SSLEILKRLYDNLSKK-----------GKTVIVILDEVDALVDKDG--EVLYS 145 (366)
T ss_pred eCCCHHHHHHHHHHHcCCCCCCCC---chHHHHHHHHHHHHhc-----------CCeEEEEEcchhhhccccc--hHHHH
Confidence 654322222211 1222 2223344444433322 4578999999999976532 22222
Q ss_pred HHHHHhcCCCcEEEEEccCCCCCCCCccccchHHH-HHHHhhcCceeEEecCCCHHHHHHHHHHHHHHh--CCCCCHHHH
Q 009072 285 LLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEEL-QSILVDAGARKVALNPITNGSIKRTLSKICRQE--QYSLSTEQI 361 (544)
Q Consensus 285 L~~~~~~~~~piIiI~t~~~~~~~~d~~~~~l~~l-~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e--~~~i~~~~l 361 (544)
|..+.......+++|... ++... ...+ +.+.++.+...|.|+|++.+++..+|...+... .-.++++++
T Consensus 146 L~r~~~~~~~~v~vi~i~------n~~~~--~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl 217 (366)
T COG1474 146 LLRAPGENKVKVSIIAVS------NDDKF--LDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVL 217 (366)
T ss_pred HHhhccccceeEEEEEEe------ccHHH--HHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHH
Confidence 333322222223333332 11111 1112 334455566779999999999999999988743 345788887
Q ss_pred HHHH---HHcCCcHHHHHHHHHHhccCC
Q 009072 362 DLVA---QASGGDIRQAITSLQFSSLKQ 386 (544)
Q Consensus 362 ~~Ia---~~s~GDiR~aIn~Lq~~~~~~ 386 (544)
+.++ ...+||.|.||..|..++..+
T Consensus 218 ~lia~~~a~~~GDAR~aidilr~A~eiA 245 (366)
T COG1474 218 KLIAALVAAESGDARKAIDILRRAGEIA 245 (366)
T ss_pred HHHHHHHHHcCccHHHHHHHHHHHHHHH
Confidence 7776 446789999999998887543
No 106
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=8.3e-14 Score=151.69 Aligned_cols=208 Identities=15% Similarity=0.217 Sum_probs=139.4
Q ss_pred CCCCcchhccChHHHHHHHHHHHHhhcCCC-----CCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCCchhhh
Q 009072 144 KPRSLEELAVQRKKVEEVRAWFEERLGDSK-----DKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIWQ 218 (544)
Q Consensus 144 ~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~-----g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~~~~~~ 218 (544)
.+.+|.|++|-++..++|.+++.- ++.++ |-..++.+||+||||||||.+|+++|.|.|.+++.+++++.-..
T Consensus 306 t~V~FkDVAG~deAK~El~E~V~f-LKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~- 383 (774)
T KOG0731|consen 306 TGVKFKDVAGVDEAKEELMEFVKF-LKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEM- 383 (774)
T ss_pred CCCccccccCcHHHHHHHHHHHHH-hcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHH-
Confidence 457899999999999999987743 33221 54455999999999999999999999999999999998863211
Q ss_pred hhhhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchh----------HHHH-HHHHHHH
Q 009072 219 EYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRT----------AFER-LRQCLLL 287 (544)
Q Consensus 219 e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~----------~~~~-~~~~L~~ 287 (544)
.-|.+ ...+++++..++.. .|+||+|||+|.+.... ..+. +-+.|.+
T Consensus 384 ------~~g~~----asrvr~lf~~ar~~------------aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~e 441 (774)
T KOG0731|consen 384 ------FVGVG----ASRVRDLFPLARKN------------APSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVE 441 (774)
T ss_pred ------hcccc----hHHHHHHHHHhhcc------------CCeEEEecccccccccccccccCCCChHHHHHHHHHHHH
Confidence 11221 35678888888755 38999999999874321 1111 1123333
Q ss_pred HHhcC-CCcEEEEEccCCCCCCCCccccchHHHHHHHhhcC-ceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Q 009072 288 LVRST-HIPTAVVLTECGKADSVDSTAQSFEELQSILVDAG-ARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVA 365 (544)
Q Consensus 288 ~~~~~-~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~-~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~l~~Ia 365 (544)
+..-. ..-+|+++++ +..+..| .++++..| ...|....|+......++...+..-....++..+..|+
T Consensus 442 mDgf~~~~~vi~~a~t-nr~d~ld---------~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a 511 (774)
T KOG0731|consen 442 MDGFETSKGVIVLAAT-NRPDILD---------PALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLA 511 (774)
T ss_pred hcCCcCCCcEEEEecc-CCccccC---------HHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHH
Confidence 32222 2346666654 3222222 23332211 55788899999999999988776666555677777788
Q ss_pred HHcCC----cHHHHHHHHHHhccC
Q 009072 366 QASGG----DIRQAITSLQFSSLK 385 (544)
Q Consensus 366 ~~s~G----DiR~aIn~Lq~~~~~ 385 (544)
..+.| ||....|.....+.+
T Consensus 512 ~~t~gf~gadl~n~~neaa~~a~r 535 (774)
T KOG0731|consen 512 SLTPGFSGADLANLCNEAALLAAR 535 (774)
T ss_pred hcCCCCcHHHHHhhhhHHHHHHHH
Confidence 88655 677777766666554
No 107
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.55 E-value=4.8e-14 Score=160.57 Aligned_cols=211 Identities=15% Similarity=0.171 Sum_probs=145.6
Q ss_pred CCCcccccCCCCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhC----------Ce
Q 009072 136 QQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLG----------AR 205 (544)
Q Consensus 136 ~~lW~eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg----------~~ 205 (544)
...++++.+|.++++++|+++.++++..+|... .. +++||+||||||||++|+.+|+.+. ..
T Consensus 174 ~~~L~~~~r~~~ld~~iGr~~ei~~~i~~l~r~------~~--~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~ 245 (852)
T TIGR03345 174 TTDLTAQAREGKIDPVLGRDDEIRQMIDILLRR------RQ--NNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVR 245 (852)
T ss_pred hhhHHHHhcCCCCCcccCCHHHHHHHHHHHhcC------Cc--CceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCe
Confidence 345777888999999999999999988887552 22 5789999999999999999999873 33
Q ss_pred EEEEeCCCchhhhhhhhccccCccc-ccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchh---HHHHH
Q 009072 206 LYEWDTPTPTIWQEYMHNCKTGLEY-TSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRT---AFERL 281 (544)
Q Consensus 206 viei~~s~~~~~~e~l~~~~~g~~~-~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~---~~~~~ 281 (544)
++.++... ...|..+ ......++.+++.+... ..+.||||||++.+.+.+ .....
T Consensus 246 i~~l~l~~----------l~ag~~~~ge~e~~lk~ii~e~~~~-----------~~~~ILfIDEih~l~~~g~~~~~~d~ 304 (852)
T TIGR03345 246 LLSLDLGL----------LQAGASVKGEFENRLKSVIDEVKAS-----------PQPIILFIDEAHTLIGAGGQAGQGDA 304 (852)
T ss_pred EEEeehhh----------hhcccccchHHHHHHHHHHHHHHhc-----------CCCeEEEEeChHHhccCCCccccccH
Confidence 33333211 1222222 23335677778776533 247899999999985421 11123
Q ss_pred HHHHHHHHhcCCCcEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHH----hCCCCC
Q 009072 282 RQCLLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQ----EQYSLS 357 (544)
Q Consensus 282 ~~~L~~~~~~~~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~----e~~~i~ 357 (544)
.+.|...+..+. +.||.+++. +.+.+.++..+++.+| +..|.+++|+.++...+|+.+... .++.++
T Consensus 305 ~n~Lkp~l~~G~--l~~IgaTT~-----~e~~~~~~~d~AL~rR--f~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~ 375 (852)
T TIGR03345 305 ANLLKPALARGE--LRTIAATTW-----AEYKKYFEKDPALTRR--FQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLIL 375 (852)
T ss_pred HHHhhHHhhCCC--eEEEEecCH-----HHHhhhhhccHHHHHh--CeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeC
Confidence 345777777663 455555432 1223344445666665 689999999999999998766543 357899
Q ss_pred HHHHHHHHHHcCCc------HHHHHHHHHHhcc
Q 009072 358 TEQIDLVAQASGGD------IRQAITSLQFSSL 384 (544)
Q Consensus 358 ~~~l~~Ia~~s~GD------iR~aIn~Lq~~~~ 384 (544)
++++..++..|++- +.+||..|.-+|.
T Consensus 376 d~al~~~~~ls~ryi~~r~LPDKAIdlldea~a 408 (852)
T TIGR03345 376 DEAVVAAVELSHRYIPGRQLPDKAVSLLDTACA 408 (852)
T ss_pred HHHHHHHHHHcccccccccCccHHHHHHHHHHH
Confidence 99999999998764 4678888877654
No 108
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.55 E-value=2e-13 Score=146.32 Aligned_cols=171 Identities=22% Similarity=0.326 Sum_probs=111.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh-----CCeEEEEeCCCchhhhhhhhccccCcccccchHHHHHHHHHHHhhcCCCCC
Q 009072 179 NVLVITGQAGVGKTATVRQIASHL-----GARLYEWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPS 253 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~el-----g~~viei~~s~~~~~~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~ 253 (544)
+.++|+||||+|||++++++|+++ +..++.+++.+.. .+....... .....|.+...
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~--~~~~~~~~~--------~~~~~~~~~~~-------- 210 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFT--NDFVNALRN--------NTMEEFKEKYR-------- 210 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHH--HHHHHHHHc--------CcHHHHHHHHh--------
Confidence 579999999999999999999997 5667777654321 111111000 01223333222
Q ss_pred CCCCCCCceEEEEecCCCCCchhH-HHHHHHHHHHHHhcCCCcEEEEEccCCCCCCCCccccchHHH-HHHHhhcC-cee
Q 009072 254 IPGESKSSAILLIDDLPVTNGRTA-FERLRQCLLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEEL-QSILVDAG-ARK 330 (544)
Q Consensus 254 ~~~~~~~~~vIlIDEid~l~~~~~-~~~~~~~L~~~~~~~~~piIiI~t~~~~~~~~d~~~~~l~~l-~~ll~r~~-~~~ 330 (544)
...+|+|||++.+.+... ...+...+..+.+.++ + ++|+++..+. .+..+ +.+.+|+. ...
T Consensus 211 ------~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~-~-iiits~~~p~--------~l~~l~~~l~SRl~~gl~ 274 (450)
T PRK00149 211 ------SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGK-Q-IVLTSDRPPK--------ELPGLEERLRSRFEWGLT 274 (450)
T ss_pred ------cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCC-c-EEEECCCCHH--------HHHHHHHHHHhHhcCCee
Confidence 245999999998865432 2334455555555543 3 4555553221 11111 23444432 468
Q ss_pred EEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH---HHHHHHHhc
Q 009072 331 VALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIRQ---AITSLQFSS 383 (544)
Q Consensus 331 I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~l~~Ia~~s~GDiR~---aIn~Lq~~~ 383 (544)
+.|.+|+.+.+.++|++.+...++.+++++++.|++.+.||+|. +|+.|..++
T Consensus 275 v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~~~R~l~~~l~~l~~~~ 330 (450)
T PRK00149 275 VDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITSNVRELEGALNRLIAYA 330 (450)
T ss_pred EEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998 555555544
No 109
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=3.2e-14 Score=134.02 Aligned_cols=215 Identities=17% Similarity=0.265 Sum_probs=138.3
Q ss_pred CCCcccccCCCCcchhccChHHHHHHHHHHHHhhcCCC-----CCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEe
Q 009072 136 QQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSK-----DKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWD 210 (544)
Q Consensus 136 ~~lW~eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~-----g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~ 210 (544)
+.+.++|.+-.+++-+.|-++.++++++.++...+++. |-..++.+|||||||+|||.+|+++|.+..+.++.+.
T Consensus 134 sLMmVeKvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvs 213 (404)
T KOG0728|consen 134 SLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVS 213 (404)
T ss_pred HHHhhhhCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEec
Confidence 34567787777887788889999999999987766543 6566689999999999999999999999999999988
Q ss_pred CCCchhhhhhhhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCch------hHHHHHHHH
Q 009072 211 TPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGR------TAFERLRQC 284 (544)
Q Consensus 211 ~s~~~~~~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~------~~~~~~~~~ 284 (544)
.+.. .+.+++. | ....++++-.++..+ |.|||+||+|.+.+. +.-..++..
T Consensus 214 gsel--vqk~ige---g------srmvrelfvmareha------------psiifmdeidsigs~r~e~~~ggdsevqrt 270 (404)
T KOG0728|consen 214 GSEL--VQKYIGE---G------SRMVRELFVMAREHA------------PSIIFMDEIDSIGSSRVESGSGGDSEVQRT 270 (404)
T ss_pred hHHH--HHHHhhh---h------HHHHHHHHHHHHhcC------------CceEeeecccccccccccCCCCccHHHHHH
Confidence 7652 2222221 1 144566666666553 789999999987321 101223333
Q ss_pred HHHHHh------cCCCcEEEEEccCCCCCCCCccccchHHH-HHHHhhcC-ceeEEecCCCHHHHHHHHHHHHHHhCCCC
Q 009072 285 LLLLVR------STHIPTAVVLTECGKADSVDSTAQSFEEL-QSILVDAG-ARKVALNPITNGSIKRTLSKICRQEQYSL 356 (544)
Q Consensus 285 L~~~~~------~~~~piIiI~t~~~~~~~~d~~~~~l~~l-~~ll~r~~-~~~I~f~p~s~~~i~~~L~~i~~~e~~~i 356 (544)
+++++. .++.--|+++|+. .+-+ +++|+..| ...|+|+||+.+....+|+-...+.++
T Consensus 271 mlellnqldgfeatknikvimatnr------------idild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl-- 336 (404)
T KOG0728|consen 271 MLELLNQLDGFEATKNIKVIMATNR------------IDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNL-- 336 (404)
T ss_pred HHHHHHhccccccccceEEEEeccc------------cccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhch--
Confidence 333332 2333345555542 2222 23333222 457999999999988888866555432
Q ss_pred CHH-HHHHHHHH----cCCcHHHHHHHHHHhccCCC
Q 009072 357 STE-QIDLVAQA----SGGDIRQAITSLQFSSLKQD 387 (544)
Q Consensus 357 ~~~-~l~~Ia~~----s~GDiR~aIn~Lq~~~~~~~ 387 (544)
... .+..||+. |+.++.....-.-+++++..
T Consensus 337 ~rgi~l~kiaekm~gasgaevk~vcteagm~alrer 372 (404)
T KOG0728|consen 337 TRGINLRKIAEKMPGASGAEVKGVCTEAGMYALRER 372 (404)
T ss_pred hcccCHHHHHHhCCCCccchhhhhhhhhhHHHHHHh
Confidence 111 14445554 44566666666666665433
No 110
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.53 E-value=4.7e-13 Score=147.75 Aligned_cols=221 Identities=15% Similarity=0.144 Sum_probs=132.0
Q ss_pred CCCcccccCCCCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHh----------CCe
Q 009072 136 QQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL----------GAR 205 (544)
Q Consensus 136 ~~lW~eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~el----------g~~ 205 (544)
.....+.|+|+++++++|+...++.+..-+.. +.+ ..++|+|||||||||+|+++++.. +..
T Consensus 141 ~~~~~~~~rp~~~~~iiGqs~~~~~l~~~ia~------~~~--~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~ 212 (615)
T TIGR02903 141 HKSAQSLLRPRAFSEIVGQERAIKALLAKVAS------PFP--QHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAP 212 (615)
T ss_pred hhHHhhhcCcCcHHhceeCcHHHHHHHHHHhc------CCC--CeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCC
Confidence 34567789999999999999988887655422 222 579999999999999999998765 345
Q ss_pred EEEEeCCCchhhhhhhhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHH
Q 009072 206 LYEWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCL 285 (544)
Q Consensus 206 viei~~s~~~~~~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L 285 (544)
++++++.....-...+.....+.............+..... ........ ..-...+|||||++.++... ++.|
T Consensus 213 fv~i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl-~~~~~g~v-~~asgGvL~LDEi~~Ld~~~-----Q~~L 285 (615)
T TIGR02903 213 FVEVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGV-PEPKTGLV-TDAHGGVLFIDEIGELDPLL-----QNKL 285 (615)
T ss_pred eEEEechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCC-CchhcCch-hhcCCCeEEEeccccCCHHH-----HHHH
Confidence 78887654310000000000000000000000111111000 00000000 00123499999999887532 2234
Q ss_pred HHHHhcC----------------------------CCcEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCC
Q 009072 286 LLLVRST----------------------------HIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPIT 337 (544)
Q Consensus 286 ~~~~~~~----------------------------~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s 337 (544)
..+++.. +..+++|++++.... ...+++.+ ||..+.|.|++
T Consensus 286 l~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~---------~l~~aLrS--R~~~i~~~pls 354 (615)
T TIGR02903 286 LKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPE---------EINPALRS--RCAEVFFEPLT 354 (615)
T ss_pred HHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEecccccc---------ccCHHHHh--ceeEEEeCCCC
Confidence 4443321 123555555432111 01133444 47899999999
Q ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHhc
Q 009072 338 NGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIRQAITSLQFSS 383 (544)
Q Consensus 338 ~~~i~~~L~~i~~~e~~~i~~~~l~~Ia~~s~GDiR~aIn~Lq~~~ 383 (544)
.+++..++.+++...++.+++++++.|+..+ ++.|.++|.|+-++
T Consensus 355 ~edi~~Il~~~a~~~~v~ls~eal~~L~~ys-~~gRraln~L~~~~ 399 (615)
T TIGR02903 355 PEDIALIVLNAAEKINVHLAAGVEELIARYT-IEGRKAVNILADVY 399 (615)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHCC-CcHHHHHHHHHHHH
Confidence 9999999999999888889999999988875 48899999997764
No 111
>PRK09087 hypothetical protein; Validated
Probab=99.53 E-value=3.8e-13 Score=130.58 Aligned_cols=181 Identities=14% Similarity=0.128 Sum_probs=117.0
Q ss_pred CcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCCchhhhhhhhcccc
Q 009072 147 SLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIWQEYMHNCKT 226 (544)
Q Consensus 147 ~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~~~~~~e~l~~~~~ 226 (544)
+++++++.+..- ....++..+. +. +.+.++|+||+|||||++++++++..+..++.... .
T Consensus 19 ~~~~Fi~~~~N~-~a~~~l~~~~----~~-~~~~l~l~G~~GsGKThLl~~~~~~~~~~~i~~~~--------------~ 78 (226)
T PRK09087 19 GRDDLLVTESNR-AAVSLVDHWP----NW-PSPVVVLAGPVGSGKTHLASIWREKSDALLIHPNE--------------I 78 (226)
T ss_pred ChhceeecCchH-HHHHHHHhcc----cC-CCCeEEEECCCCCCHHHHHHHHHHhcCCEEecHHH--------------c
Confidence 678877633221 1333555542 11 22569999999999999999999987665432210 0
Q ss_pred CcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHHHHHhcCCCcEEEEEccCCCC
Q 009072 227 GLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPTAVVLTECGKA 306 (544)
Q Consensus 227 g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~~~~~~~~piIiI~t~~~~~ 306 (544)
+ ..++..+. ..+|+|||++.+... -..+...+..+.+.+ . .++|+++..+.
T Consensus 79 ~----------~~~~~~~~---------------~~~l~iDDi~~~~~~--~~~lf~l~n~~~~~g-~-~ilits~~~p~ 129 (226)
T PRK09087 79 G----------SDAANAAA---------------EGPVLIEDIDAGGFD--ETGLFHLINSVRQAG-T-SLLMTSRLWPS 129 (226)
T ss_pred c----------hHHHHhhh---------------cCeEEEECCCCCCCC--HHHHHHHHHHHHhCC-C-eEEEECCCChH
Confidence 0 01122111 137899999987432 133445555555544 3 35555543221
Q ss_pred CCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHh
Q 009072 307 DSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIRQAITSLQFS 382 (544)
Q Consensus 307 ~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~l~~Ia~~s~GDiR~aIn~Lq~~ 382 (544)
.....+..+++.+.. +..+.+.+|+.+.+..+|++.+...++.+++++++.|++.+.||+|.++..|.-+
T Consensus 130 ----~~~~~~~dL~SRl~~--gl~~~l~~pd~e~~~~iL~~~~~~~~~~l~~ev~~~La~~~~r~~~~l~~~l~~L 199 (226)
T PRK09087 130 ----SWNVKLPDLKSRLKA--ATVVEIGEPDDALLSQVIFKLFADRQLYVDPHVVYYLVSRMERSLFAAQTIVDRL 199 (226)
T ss_pred ----HhccccccHHHHHhC--CceeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 111123445555543 6899999999999999999999999999999999999999999999988644433
No 112
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=1.8e-14 Score=136.70 Aligned_cols=218 Identities=16% Similarity=0.215 Sum_probs=140.3
Q ss_pred CCCcccccCCCCcchhccChHHHHHHHHHHHHhhcCCC-----CCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEe
Q 009072 136 QQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSK-----DKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWD 210 (544)
Q Consensus 136 ~~lW~eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~-----g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~ 210 (544)
..+-+|.-+-.++.|+.|-++.++.+++.++..+.++. |-.|++.+|+|||||+|||.+|+++|+..+..++.+.
T Consensus 164 tmm~veekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvi 243 (435)
T KOG0729|consen 164 TMMQVEEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVI 243 (435)
T ss_pred eEEEeecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeeh
Confidence 45567777778999999999999999999887655433 5566799999999999999999999999999999988
Q ss_pred CCCchhhhhhhhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCch------hHHHHHHHH
Q 009072 211 TPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGR------TAFERLRQC 284 (544)
Q Consensus 211 ~s~~~~~~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~------~~~~~~~~~ 284 (544)
.+... +.+++ +-....+++++.++. ++.+|||+||+|.+.+. +.-+.++..
T Consensus 244 gselv--qkyvg---------egarmvrelf~mart------------kkaciiffdeidaiggarfddg~ggdnevqrt 300 (435)
T KOG0729|consen 244 GSELV--QKYVG---------EGARMVRELFEMART------------KKACIIFFDEIDAIGGARFDDGAGGDNEVQRT 300 (435)
T ss_pred hHHHH--HHHhh---------hhHHHHHHHHHHhcc------------cceEEEEeeccccccCccccCCCCCcHHHHHH
Confidence 76522 22221 112456667765531 46789999999988442 112345555
Q ss_pred HHHHHhc----C-CCc-EEEEEccCCCCCCCCccccchHHHHHHHhhcC-ceeEEecCCCHHHHHHHHHHHHHHhCC--C
Q 009072 285 LLLLVRS----T-HIP-TAVVLTECGKADSVDSTAQSFEELQSILVDAG-ARKVALNPITNGSIKRTLSKICRQEQY--S 355 (544)
Q Consensus 285 L~~~~~~----~-~~p-iIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~-~~~I~f~p~s~~~i~~~L~~i~~~e~~--~ 355 (544)
+++++.. . +.. -|+++|+... . .| +++++..| ...++|..|+-+-...+++-.++...+ .
T Consensus 301 mleli~qldgfdprgnikvlmatnrpd-t-ld---------pallrpgrldrkvef~lpdlegrt~i~kihaksmsverd 369 (435)
T KOG0729|consen 301 MLELINQLDGFDPRGNIKVLMATNRPD-T-LD---------PALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERD 369 (435)
T ss_pred HHHHHHhccCCCCCCCeEEEeecCCCC-C-cC---------HhhcCCcccccceeccCCcccccceeEEEeccccccccc
Confidence 5555543 1 112 3455554321 1 11 22222111 347899988877666665544433322 2
Q ss_pred CCHHHHHHHHHH-cCCcHHHHHHHHHHhccCCC
Q 009072 356 LSTEQIDLVAQA-SGGDIRQAITSLQFSSLKQD 387 (544)
Q Consensus 356 i~~~~l~~Ia~~-s~GDiR~aIn~Lq~~~~~~~ 387 (544)
+--+.+..||-. ++.+||+...-.-+++.+..
T Consensus 370 ir~ellarlcpnstgaeirsvcteagmfairar 402 (435)
T KOG0729|consen 370 IRFELLARLCPNSTGAEIRSVCTEAGMFAIRAR 402 (435)
T ss_pred hhHHHHHhhCCCCcchHHHHHHHHhhHHHHHHH
Confidence 334455555533 45589998888888876543
No 113
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.52 E-value=1.3e-12 Score=126.40 Aligned_cols=172 Identities=25% Similarity=0.366 Sum_probs=108.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh-----CCeEEEEeCCCchhhhhhhhccccCcccccchHHHHHHHHHHHhhcCCCCC
Q 009072 179 NVLVITGQAGVGKTATVRQIASHL-----GARLYEWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPS 253 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~el-----g~~viei~~s~~~~~~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~ 253 (544)
+.++||||+|+|||++++++++++ +..++.+++.+.. .+....... ..+.+|.+...
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~--~~~~~~~~~--------~~~~~~~~~~~-------- 96 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFI--REFADALRD--------GEIEEFKDRLR-------- 96 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHH--HHHHHHHHT--------TSHHHHHHHHC--------
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHH--HHHHHHHHc--------ccchhhhhhhh--------
Confidence 579999999999999999999875 5667666543211 111111000 11233444332
Q ss_pred CCCCCCCceEEEEecCCCCCchhH-HHHHHHHHHHHHhcCCCcEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEE
Q 009072 254 IPGESKSSAILLIDDLPVTNGRTA-FERLRQCLLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVA 332 (544)
Q Consensus 254 ~~~~~~~~~vIlIDEid~l~~~~~-~~~~~~~L~~~~~~~~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~ 332 (544)
...+|+|||++.+.+... ...+...+..+.+.++ .++++++..+... ....+.+.+.+.. +..+.
T Consensus 97 ------~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k--~li~ts~~~P~~l----~~~~~~L~SRl~~--Gl~~~ 162 (219)
T PF00308_consen 97 ------SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGK--QLILTSDRPPSEL----SGLLPDLRSRLSW--GLVVE 162 (219)
T ss_dssp ------TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTS--EEEEEESS-TTTT----TTS-HHHHHHHHC--SEEEE
T ss_pred ------cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCC--eEEEEeCCCCccc----cccChhhhhhHhh--cchhh
Confidence 235999999999877532 2334455666666543 3556665444322 1233456666654 67899
Q ss_pred ecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHh
Q 009072 333 LNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIRQAITSLQFS 382 (544)
Q Consensus 333 f~p~s~~~i~~~L~~i~~~e~~~i~~~~l~~Ia~~s~GDiR~aIn~Lq~~ 382 (544)
+.+|+.+....+|++.+...++.+++++++.|++...+|+|.....|+.+
T Consensus 163 l~~pd~~~r~~il~~~a~~~~~~l~~~v~~~l~~~~~~~~r~L~~~l~~l 212 (219)
T PF00308_consen 163 LQPPDDEDRRRILQKKAKERGIELPEEVIEYLARRFRRDVRELEGALNRL 212 (219)
T ss_dssp E----HHHHHHHHHHHHHHTT--S-HHHHHHHHHHTTSSHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998866665544
No 114
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=1.3e-13 Score=130.56 Aligned_cols=198 Identities=15% Similarity=0.221 Sum_probs=120.7
Q ss_pred cccccCCCCcchhccChHHHHHHHHHHHHhhcCC-----CCCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCC
Q 009072 139 WAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDS-----KDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPT 213 (544)
Q Consensus 139 W~eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~-----~g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~ 213 (544)
-++.-+-.+++|+.|-++.+++|.+.+.....+. -|-.|++.+|+|||||+|||.+|++.|.+.+..++.+.+|.
T Consensus 161 evDekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQ 240 (424)
T KOG0652|consen 161 EVDEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQ 240 (424)
T ss_pred eeccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchH
Confidence 3455555789999999999999988875433221 15556699999999999999999999999988887776664
Q ss_pred chhhhhhhhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchh------HHHHHHHHHHH
Q 009072 214 PTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRT------AFERLRQCLLL 287 (544)
Q Consensus 214 ~~~~~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~------~~~~~~~~L~~ 287 (544)
... -++ ..|. .-+++.+.-++ .+.|.||||||+|.+.... .-+.++..+++
T Consensus 241 LVQ--MfI---GdGA------kLVRDAFaLAK------------EkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLE 297 (424)
T KOG0652|consen 241 LVQ--MFI---GDGA------KLVRDAFALAK------------EKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLE 297 (424)
T ss_pred HHh--hhh---cchH------HHHHHHHHHhh------------ccCCeEEEEechhhhccccccccccccHHHHHHHHH
Confidence 211 111 1121 33444444332 2458999999999884321 11234444444
Q ss_pred HHh----cCCCcEEEEEccCCCCCCCCccccchHHHHHHHhhcC-ceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHH
Q 009072 288 LVR----STHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAG-ARKVALNPITNGSIKRTLSKICRQEQYSLSTEQID 362 (544)
Q Consensus 288 ~~~----~~~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~-~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~l~ 362 (544)
++. -+...-|-++..++..+..| ++++++.| ...|+|+-|+.+....+++-..++..+. ++-.++
T Consensus 298 LLNQLDGFss~~~vKviAATNRvDiLD---------PALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~-~DvNfe 367 (424)
T KOG0652|consen 298 LLNQLDGFSSDDRVKVIAATNRVDILD---------PALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVS-DDVNFE 367 (424)
T ss_pred HHHhhcCCCCccceEEEeecccccccC---------HHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCC-CCCCHH
Confidence 433 22222233333333322222 34444322 4579999999888888777665554432 233467
Q ss_pred HHHHHcC
Q 009072 363 LVAQASG 369 (544)
Q Consensus 363 ~Ia~~s~ 369 (544)
.++..+.
T Consensus 368 ELaRsTd 374 (424)
T KOG0652|consen 368 ELARSTD 374 (424)
T ss_pred HHhhccc
Confidence 7777654
No 115
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.51 E-value=4e-13 Score=142.30 Aligned_cols=172 Identities=22% Similarity=0.322 Sum_probs=111.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh-----CCeEEEEeCCCchhhhhhhhccccCcccccchHHHHHHHHHHHhhcCCCCC
Q 009072 179 NVLVITGQAGVGKTATVRQIASHL-----GARLYEWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPS 253 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~el-----g~~viei~~s~~~~~~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~ 253 (544)
+.++|+||||+|||++++++++++ +..++.+++.+.. .+.......+ .+..|.+...
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~--~~~~~~~~~~--------~~~~~~~~~~-------- 198 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFT--NDFVNALRNN--------KMEEFKEKYR-------- 198 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHH--HHHHHHHHcC--------CHHHHHHHHH--------
Confidence 579999999999999999999987 5677777654311 1111110000 1223333222
Q ss_pred CCCCCCCceEEEEecCCCCCchhH-HHHHHHHHHHHHhcCCCcEEEEEccCCCCCCCCccccchHHH-HHHHhhcC-cee
Q 009072 254 IPGESKSSAILLIDDLPVTNGRTA-FERLRQCLLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEEL-QSILVDAG-ARK 330 (544)
Q Consensus 254 ~~~~~~~~~vIlIDEid~l~~~~~-~~~~~~~L~~~~~~~~~piIiI~t~~~~~~~~d~~~~~l~~l-~~ll~r~~-~~~ 330 (544)
...+|+|||++.+.+... ...+...+..+.+.. .+ ++|+++..+.. +..+ ..+.+|+. ...
T Consensus 199 ------~~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~-~~-iiits~~~p~~--------l~~l~~~l~SRl~~g~~ 262 (405)
T TIGR00362 199 ------SVDLLLIDDIQFLAGKERTQEEFFHTFNALHENG-KQ-IVLTSDRPPKE--------LPGLEERLRSRFEWGLV 262 (405)
T ss_pred ------hCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCC-CC-EEEecCCCHHH--------HhhhhhhhhhhccCCeE
Confidence 234999999998865422 223444555555544 33 44555432211 1111 23334432 367
Q ss_pred EEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH---HHHHHHHhcc
Q 009072 331 VALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIRQ---AITSLQFSSL 384 (544)
Q Consensus 331 I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~l~~Ia~~s~GDiR~---aIn~Lq~~~~ 384 (544)
+.|.+|+.+.+..+|+..+...++.+++++++.|++...||+|. ||+.|..++.
T Consensus 263 v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~~~r~l~~~l~~l~~~a~ 319 (405)
T TIGR00362 263 VDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNIRSNVRELEGALNRLLAYAS 319 (405)
T ss_pred EEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999997 5566655553
No 116
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=1.8e-14 Score=138.31 Aligned_cols=214 Identities=16% Similarity=0.281 Sum_probs=137.5
Q ss_pred CCCcccccCCCCcchhccChHHHHHHHHHHHHhhcCCC-----CCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEe
Q 009072 136 QQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSK-----DKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWD 210 (544)
Q Consensus 136 ~~lW~eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~-----g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~ 210 (544)
..+=+||-+-.+++|+.|-+..++++++-++..+.++. |-.|++.++|||+||+|||.+|+++|++....++.+.
T Consensus 172 ~vmK~eKaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvv 251 (440)
T KOG0726|consen 172 SVMKVEKAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVV 251 (440)
T ss_pred eeeecccCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhh
Confidence 34557787888999999999999999998877665543 6666699999999999999999999999988888777
Q ss_pred CCCchhhhhhhhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCch------hHHHHHHHH
Q 009072 211 TPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGR------TAFERLRQC 284 (544)
Q Consensus 211 ~s~~~~~~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~------~~~~~~~~~ 284 (544)
.++. .+++++ .|. .-.++++..+..++ |.|+||||||.+... +.-+.++..
T Consensus 252 GseL--iQkylG---dGp------klvRqlF~vA~e~a------------pSIvFiDEIdAiGtKRyds~SggerEiQrt 308 (440)
T KOG0726|consen 252 GSEL--IQKYLG---DGP------KLVRELFRVAEEHA------------PSIVFIDEIDAIGTKRYDSNSGGEREIQRT 308 (440)
T ss_pred hHHH--HHHHhc---cch------HHHHHHHHHHHhcC------------CceEEeehhhhhccccccCCCccHHHHHHH
Confidence 6542 222222 122 45677777776553 789999999987432 123445555
Q ss_pred HHHHHhc-----CCCcE-EEEEccCCCCCCCCccccchHHHHHHHhhcC--ceeEEecCCCHHHHHHHHHHHHHHhCCCC
Q 009072 285 LLLLVRS-----THIPT-AVVLTECGKADSVDSTAQSFEELQSILVDAG--ARKVALNPITNGSIKRTLSKICRQEQYSL 356 (544)
Q Consensus 285 L~~~~~~-----~~~pi-IiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~--~~~I~f~p~s~~~i~~~L~~i~~~e~~~i 356 (544)
++++++. ++..+ |+++|+ +.+.+.+.|-|++ ...|.|+.|+...-++++.-.-.+ +.+
T Consensus 309 mLELLNQldGFdsrgDvKvimATn------------rie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~--Mtl 374 (440)
T KOG0726|consen 309 MLELLNQLDGFDSRGDVKVIMATN------------RIETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSR--MTL 374 (440)
T ss_pred HHHHHHhccCccccCCeEEEEecc------------cccccCHhhcCCCccccccccCCCchhhhceeEEEeecc--cch
Confidence 5555543 22333 444443 2233333333332 356899888877666655432222 122
Q ss_pred CHH-HHHHHH----HHcCCcHHHHHHHHHHhccCC
Q 009072 357 STE-QIDLVA----QASGGDIRQAITSLQFSSLKQ 386 (544)
Q Consensus 357 ~~~-~l~~Ia----~~s~GDiR~aIn~Lq~~~~~~ 386 (544)
..+ .++.++ ..|+.||.....-.-+++++.
T Consensus 375 ~~dVnle~li~~kddlSGAdIkAictEaGllAlRe 409 (440)
T KOG0726|consen 375 AEDVNLEELIMTKDDLSGADIKAICTEAGLLALRE 409 (440)
T ss_pred hccccHHHHhhcccccccccHHHHHHHHhHHHHHH
Confidence 211 233333 337778887777766776643
No 117
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.48 E-value=1.1e-12 Score=139.65 Aligned_cols=206 Identities=14% Similarity=0.168 Sum_probs=126.2
Q ss_pred CCCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHh-----CCeEEEEeCCCchhhhh
Q 009072 145 PRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL-----GARLYEWDTPTPTIWQE 219 (544)
Q Consensus 145 P~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~el-----g~~viei~~s~~~~~~e 219 (544)
+-+|+.++..+.. +.....+..+...+ |... +.++|+||+|+|||++++++++++ +..++.+.+.+.. .+
T Consensus 111 ~~tFdnFv~g~~n-~~A~~aa~~~a~~~-~~~~-npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~--~~ 185 (450)
T PRK14087 111 ENTFENFVIGSSN-EQAFIAVQTVSKNP-GISY-NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFA--RK 185 (450)
T ss_pred ccchhcccCCCcH-HHHHHHHHHHHhCc-Cccc-CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHH--HH
Confidence 3578887754432 22223333332221 3222 579999999999999999999965 4677766654311 11
Q ss_pred hhhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchh-HHHHHHHHHHHHHhcCCCcEEE
Q 009072 220 YMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRT-AFERLRQCLLLLVRSTHIPTAV 298 (544)
Q Consensus 220 ~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~-~~~~~~~~L~~~~~~~~~piIi 298 (544)
....... ....+..+.... ....+|+|||++.+.+.. ....+...+..+.+..+ .|+
T Consensus 186 ~~~~l~~------~~~~~~~~~~~~--------------~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k--~iI 243 (450)
T PRK14087 186 AVDILQK------THKEIEQFKNEI--------------CQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDK--QLF 243 (450)
T ss_pred HHHHHHH------hhhHHHHHHHHh--------------ccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCC--cEE
Confidence 1111000 001233333322 234599999999886543 23334455555555543 355
Q ss_pred EEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHHhCC--CCCHHHHHHHHHHcCCcHHHHH
Q 009072 299 VLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQY--SLSTEQIDLVAQASGGDIRQAI 376 (544)
Q Consensus 299 I~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e~~--~i~~~~l~~Ia~~s~GDiR~aI 376 (544)
++++..+... ....+.+.+.+. ....+.+.+|+.+++.++|++.+...|+ .+++++++.|++.++||+|.++
T Consensus 244 ltsd~~P~~l----~~l~~rL~SR~~--~Gl~~~L~~pd~e~r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~ 317 (450)
T PRK14087 244 FSSDKSPELL----NGFDNRLITRFN--MGLSIAIQKLDNKTATAIIKKEIKNQNIKQEVTEEAINFISNYYSDDVRKIK 317 (450)
T ss_pred EECCCCHHHH----hhccHHHHHHHh--CCceeccCCcCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHccCCCHHHHH
Confidence 5555332111 001122333333 2678999999999999999999998885 6999999999999999999999
Q ss_pred HHHHHhc
Q 009072 377 TSLQFSS 383 (544)
Q Consensus 377 n~Lq~~~ 383 (544)
+.|.-+.
T Consensus 318 gaL~~l~ 324 (450)
T PRK14087 318 GSVSRLN 324 (450)
T ss_pred HHHHHHH
Confidence 8886553
No 118
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=4.6e-13 Score=129.19 Aligned_cols=193 Identities=13% Similarity=0.148 Sum_probs=119.1
Q ss_pred CCCcchhccChHHHHHHHHHHHHhhcCCC----CCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCCchhhhhh
Q 009072 145 PRSLEELAVQRKKVEEVRAWFEERLGDSK----DKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIWQEY 220 (544)
Q Consensus 145 P~~~~dLv~~~~~~~~l~~wL~~~~~~~~----g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~~~~~~e~ 220 (544)
-..++|++|-+...+.|++.+-..++-+. ++.|-+.+|||||||+||+.+|+++|.+.+-.++.+..+|..
T Consensus 129 NVkWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLv----- 203 (439)
T KOG0739|consen 129 NVKWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLV----- 203 (439)
T ss_pred CCchhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHH-----
Confidence 36899999999999999887654433221 455668999999999999999999999999999998887732
Q ss_pred hhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCc------hhHHHHHH-HHHHHHHhcCC
Q 009072 221 MHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNG------RTAFERLR-QCLLLLVRSTH 293 (544)
Q Consensus 221 l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~------~~~~~~~~-~~L~~~~~~~~ 293 (544)
..+..++..-++++++.++. .+|.||||||||.+.+ ..+.+|+. +.|.++-.-+.
T Consensus 204 ------SKWmGESEkLVknLFemARe------------~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~ 265 (439)
T KOG0739|consen 204 ------SKWMGESEKLVKNLFEMARE------------NKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGN 265 (439)
T ss_pred ------HHHhccHHHHHHHHHHHHHh------------cCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhcccc
Confidence 12223344556677777654 3589999999998733 23456666 44545433222
Q ss_pred C-cEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC
Q 009072 294 I-PTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGG 370 (544)
Q Consensus 294 ~-piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~l~~Ia~~s~G 370 (544)
. .-|++.+.++. -+ .|.+.++|..-..|.++.|.........+-.+..-...+++..+..|+..+.|
T Consensus 266 d~~gvLVLgATNi-------Pw---~LDsAIRRRFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeG 333 (439)
T KOG0739|consen 266 DNDGVLVLGATNI-------PW---VLDSAIRRRFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEG 333 (439)
T ss_pred CCCceEEEecCCC-------ch---hHHHHHHHHhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCC
Confidence 1 12333333221 11 23333443224455555554433333222222222335677778888877655
No 119
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.47 E-value=8.6e-13 Score=149.62 Aligned_cols=194 Identities=16% Similarity=0.229 Sum_probs=128.7
Q ss_pred cCCCCcchhccChHHHHHHHHHHHHhhcCC-----CCCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCCchhh
Q 009072 143 YKPRSLEELAVQRKKVEEVRAWFEERLGDS-----KDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIW 217 (544)
Q Consensus 143 y~P~~~~dLv~~~~~~~~l~~wL~~~~~~~-----~g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~~~~~ 217 (544)
.+..+++|++|.++.++++++++...+..+ -|..+++.+||+||||||||++++++|++++..++.++.++..
T Consensus 172 ~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~-- 249 (733)
T TIGR01243 172 VPKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIM-- 249 (733)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHh--
Confidence 345789999999999999999987654432 1445558999999999999999999999999999999876421
Q ss_pred hhhhhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchh------HHHHHHHHHHHHHhc
Q 009072 218 QEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRT------AFERLRQCLLLLVRS 291 (544)
Q Consensus 218 ~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~------~~~~~~~~L~~~~~~ 291 (544)
+.........++.+++.+... .|.||+|||+|.+.... .-.++.+.|..+++.
T Consensus 250 ---------~~~~g~~~~~l~~lf~~a~~~------------~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~ 308 (733)
T TIGR01243 250 ---------SKYYGESEERLREIFKEAEEN------------APSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDG 308 (733)
T ss_pred ---------cccccHHHHHHHHHHHHHHhc------------CCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhc
Confidence 111122335567777766432 37899999999874321 113445556666653
Q ss_pred --CCCcEEEEEccCCCCCCCCccccchHHHHHHHh---hcCceeEEecCCCHHHHHHHHHHHHHHhCCCC-CHHHHHHHH
Q 009072 292 --THIPTAVVLTECGKADSVDSTAQSFEELQSILV---DAGARKVALNPITNGSIKRTLSKICRQEQYSL-STEQIDLVA 365 (544)
Q Consensus 292 --~~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~---r~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i-~~~~l~~Ia 365 (544)
....+++|.+++.. ..+.+.+. |+ ...+.|..|+.++...+|+..+.. ..+ ++..++.++
T Consensus 309 l~~~~~vivI~atn~~-----------~~ld~al~r~gRf-d~~i~i~~P~~~~R~~Il~~~~~~--~~l~~d~~l~~la 374 (733)
T TIGR01243 309 LKGRGRVIVIGATNRP-----------DALDPALRRPGRF-DREIVIRVPDKRARKEILKVHTRN--MPLAEDVDLDKLA 374 (733)
T ss_pred cccCCCEEEEeecCCh-----------hhcCHHHhCchhc-cEEEEeCCcCHHHHHHHHHHHhcC--CCCccccCHHHHH
Confidence 22355666444221 11222222 22 457899999999999998855443 333 344578888
Q ss_pred HHcCCcHH
Q 009072 366 QASGGDIR 373 (544)
Q Consensus 366 ~~s~GDiR 373 (544)
+.+.|-..
T Consensus 375 ~~t~G~~g 382 (733)
T TIGR01243 375 EVTHGFVG 382 (733)
T ss_pred HhCCCCCH
Confidence 88877543
No 120
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.47 E-value=2.9e-12 Score=130.89 Aligned_cols=176 Identities=16% Similarity=0.138 Sum_probs=112.9
Q ss_pred CCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCCc-h-hhhhhh---h----ccc-cCcccccchHHHHHHHHH
Q 009072 174 DKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTP-T-IWQEYM---H----NCK-TGLEYTSKLDEFENFVER 243 (544)
Q Consensus 174 g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~~-~-~~~e~l---~----~~~-~g~~~~s~~~~~~~~l~~ 243 (544)
|+.+ +.+||+||+|+|||++|+.+|+.+.+.--.-..++. + ...... + ... .+....-..+.++++.+.
T Consensus 19 ~r~~-ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l~~~ 97 (328)
T PRK05707 19 GRHP-HAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRELVSF 97 (328)
T ss_pred CCcc-eeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHHHHHH
Confidence 5655 889999999999999999999998763110001110 0 000000 0 000 010111234777777776
Q ss_pred HHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHHHHHhcCCCcEEEEEccCCCCCCCCccccchHHHHHHH
Q 009072 244 IRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSIL 323 (544)
Q Consensus 244 ~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~~~~~~~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll 323 (544)
+...+ ..+..+|+||||+|.|+... .++|++.+++.+...+||.++... -..++++.
T Consensus 98 ~~~~~--------~~~~~kv~iI~~a~~m~~~a-----aNaLLK~LEEPp~~~~fiL~t~~~----------~~ll~TI~ 154 (328)
T PRK05707 98 VVQTA--------QLGGRKVVLIEPAEAMNRNA-----ANALLKSLEEPSGDTVLLLISHQP----------SRLLPTIK 154 (328)
T ss_pred Hhhcc--------ccCCCeEEEECChhhCCHHH-----HHHHHHHHhCCCCCeEEEEEECCh----------hhCcHHHH
Confidence 65332 12457799999999997643 367888888876555555544221 11234555
Q ss_pred hhcCceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHH
Q 009072 324 VDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIRQAITSL 379 (544)
Q Consensus 324 ~r~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~l~~Ia~~s~GDiR~aIn~L 379 (544)
+| |..+.|.||+.+++...|.... ...+++....++..++|.+..|+..+
T Consensus 155 SR--c~~~~~~~~~~~~~~~~L~~~~----~~~~~~~~~~~l~la~Gsp~~A~~l~ 204 (328)
T PRK05707 155 SR--CQQQACPLPSNEESLQWLQQAL----PESDERERIELLTLAGGSPLRALQLH 204 (328)
T ss_pred hh--ceeeeCCCcCHHHHHHHHHHhc----ccCChHHHHHHHHHcCCCHHHHHHHH
Confidence 54 9999999999999999987642 13466777788899999999988654
No 121
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.46 E-value=1.6e-12 Score=138.37 Aligned_cols=199 Identities=21% Similarity=0.263 Sum_probs=120.3
Q ss_pred CcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHh-----CCeEEEEeCCCchhhhhhh
Q 009072 147 SLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL-----GARLYEWDTPTPTIWQEYM 221 (544)
Q Consensus 147 ~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~el-----g~~viei~~s~~~~~~e~l 221 (544)
+|++++..+... ........+... .+.. +.++||||||+|||++++++|+++ +..++.+++.+. ..+..
T Consensus 103 tFdnFv~g~~n~-~a~~~~~~~~~~-~~~~--n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f--~~~~~ 176 (440)
T PRK14088 103 TFENFVVGPGNS-FAYHAALEVAKN-PGRY--NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKF--LNDLV 176 (440)
T ss_pred cccccccCCchH-HHHHHHHHHHhC-cCCC--CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHH--HHHHH
Confidence 677777544322 222233333221 1332 579999999999999999999986 456666664331 11111
Q ss_pred hccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhH-HHHHHHHHHHHHhcCCCcEEEEE
Q 009072 222 HNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTA-FERLRQCLLLLVRSTHIPTAVVL 300 (544)
Q Consensus 222 ~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~-~~~~~~~L~~~~~~~~~piIiI~ 300 (544)
..... .....|.+... ..+.+|||||++.+.+... ...+...+..+.+.++ .++++
T Consensus 177 ~~~~~--------~~~~~f~~~~~-------------~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k--~iIit 233 (440)
T PRK14088 177 DSMKE--------GKLNEFREKYR-------------KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGK--QIVIC 233 (440)
T ss_pred HHHhc--------ccHHHHHHHHH-------------hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCC--eEEEE
Confidence 11000 11223333221 1256999999998754322 2334455555555543 35555
Q ss_pred ccCCCCCCCCccccchHHH-HHHHhhc-CceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHH
Q 009072 301 TECGKADSVDSTAQSFEEL-QSILVDA-GARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIRQAITS 378 (544)
Q Consensus 301 t~~~~~~~~d~~~~~l~~l-~~ll~r~-~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~l~~Ia~~s~GDiR~aIn~ 378 (544)
++..+ ..+..+ ..+.+|+ ....+.+.||+.+....+|++.+..+++.+++++++.|++...||+|.....
T Consensus 234 sd~~p--------~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~~ev~~~Ia~~~~~~~R~L~g~ 305 (440)
T PRK14088 234 SDREP--------QKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLEIEHGELPEEVLNFVAENVDDNLRRLRGA 305 (440)
T ss_pred CCCCH--------HHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHhccccCHHHHHHH
Confidence 54221 111112 2333343 1458899999999999999999999999999999999999999998876555
Q ss_pred HHHh
Q 009072 379 LQFS 382 (544)
Q Consensus 379 Lq~~ 382 (544)
|.-+
T Consensus 306 l~~l 309 (440)
T PRK14088 306 IIKL 309 (440)
T ss_pred HHHH
Confidence 5433
No 122
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.45 E-value=3.6e-12 Score=130.90 Aligned_cols=195 Identities=18% Similarity=0.227 Sum_probs=122.3
Q ss_pred Ccchhcc-ChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCCc-h-hhhhhhhc
Q 009072 147 SLEELAV-QRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTP-T-IWQEYMHN 223 (544)
Q Consensus 147 ~~~dLv~-~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~~-~-~~~e~l~~ 223 (544)
.+..|+| ++..++.+...+.. |+.+ +.+||+||+|+|||++|+.+|+.+.+.--.-..+.. + ........
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~------~~l~-ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~ 75 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAK------NRLS-HAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSG 75 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHc------CCCC-ceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcC
Confidence 3567888 88899999888765 6665 889999999999999999999997543100000000 0 00000000
Q ss_pred cccCc------ccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHHHHHhcCCCcEE
Q 009072 224 CKTGL------EYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPTA 297 (544)
Q Consensus 224 ~~~g~------~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~~~~~~~~piI 297 (544)
..... +..-..+.++++.+.+...+ ..+.++|+||||++.++.. ..++|++.+++.+..++
T Consensus 76 ~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~--------~~~~~kvviI~~a~~~~~~-----a~NaLLK~LEEPp~~~~ 142 (329)
T PRK08058 76 NHPDVHLVAPDGQSIKKDQIRYLKEEFSKSG--------VESNKKVYIIEHADKMTAS-----AANSLLKFLEEPSGGTT 142 (329)
T ss_pred CCCCEEEeccccccCCHHHHHHHHHHHhhCC--------cccCceEEEeehHhhhCHH-----HHHHHHHHhcCCCCCce
Confidence 00000 11123466777776654322 1134689999999998653 34679999998766665
Q ss_pred EEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHH
Q 009072 298 VVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIRQAIT 377 (544)
Q Consensus 298 iI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~l~~Ia~~s~GDiR~aIn 377 (544)
+|..+.. .-..++++.+| |..+.|.+++.+++...|. .+| ++++....++.. .|+++.|+.
T Consensus 143 ~Il~t~~----------~~~ll~TIrSR--c~~i~~~~~~~~~~~~~L~----~~g--i~~~~~~~l~~~-~g~~~~A~~ 203 (329)
T PRK08058 143 AILLTEN----------KHQILPTILSR--CQVVEFRPLPPESLIQRLQ----EEG--ISESLATLLAGL-TNSVEEALA 203 (329)
T ss_pred EEEEeCC----------hHhCcHHHHhh--ceeeeCCCCCHHHHHHHHH----HcC--CChHHHHHHHHH-cCCHHHHHH
Confidence 5554321 11223445454 9999999999999987776 345 556666566655 478998886
Q ss_pred HHH
Q 009072 378 SLQ 380 (544)
Q Consensus 378 ~Lq 380 (544)
.++
T Consensus 204 l~~ 206 (329)
T PRK08058 204 LSE 206 (329)
T ss_pred Hhc
Confidence 553
No 123
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.45 E-value=1.8e-12 Score=137.70 Aligned_cols=171 Identities=17% Similarity=0.332 Sum_probs=112.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeCCCchhhhhhhhccccCcccccchHHHHHHHHHHHhhcCCCCCCC
Q 009072 179 NVLVITGQAGVGKTATVRQIASHL---GARLYEWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIP 255 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~el---g~~viei~~s~~~~~~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~ 255 (544)
+.++||||+|+|||++++++++++ +..++.+.+.+.. .+....... .....|... +
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~--~~~~~~l~~--------~~~~~f~~~---~-------- 200 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFT--EHLVSAIRS--------GEMQRFRQF---Y-------- 200 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHH--HHHHHHHhc--------chHHHHHHH---c--------
Confidence 679999999999999999999986 6777766543210 000000000 011111111 1
Q ss_pred CCCCCceEEEEecCCCCCchhH-HHHHHHHHHHHHhcCCCcEEEEEccCCCCCCCCccccchHHH-HHHHhhc-CceeEE
Q 009072 256 GESKSSAILLIDDLPVTNGRTA-FERLRQCLLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEEL-QSILVDA-GARKVA 332 (544)
Q Consensus 256 ~~~~~~~vIlIDEid~l~~~~~-~~~~~~~L~~~~~~~~~piIiI~t~~~~~~~~d~~~~~l~~l-~~ll~r~-~~~~I~ 332 (544)
....||+|||++.+.+... ...+...+..+...+ . .|+++++..+. .+..+ +.+.+|+ ....+.
T Consensus 201 ---~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~-k-~IIlts~~~p~--------~l~~l~~rL~SR~~~Gl~~~ 267 (445)
T PRK12422 201 ---RNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEG-K-LIVISSTCAPQ--------DLKAMEERLISRFEWGIAIP 267 (445)
T ss_pred ---ccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCC-C-cEEEecCCCHH--------HHhhhHHHHHhhhcCCeEEe
Confidence 2356999999999865422 223334444444443 2 34555543211 11112 3344443 147899
Q ss_pred ecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHhc
Q 009072 333 LNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIRQAITSLQFSS 383 (544)
Q Consensus 333 f~p~s~~~i~~~L~~i~~~e~~~i~~~~l~~Ia~~s~GDiR~aIn~Lq~~~ 383 (544)
+.+|+.+++..+|++.+...++.+++++++.|+....||+|..++.|+.++
T Consensus 268 l~~pd~e~r~~iL~~k~~~~~~~l~~evl~~la~~~~~dir~L~g~l~~l~ 318 (445)
T PRK12422 268 LHPLTKEGLRSFLERKAEALSIRIEETALDFLIEALSSNVKSLLHALTLLA 318 (445)
T ss_pred cCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999885
No 124
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.44 E-value=2.3e-12 Score=143.27 Aligned_cols=215 Identities=14% Similarity=0.186 Sum_probs=138.6
Q ss_pred CCCcccccCCCCcchhccChHHHHHHHHHHHHhhc-----CCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEe
Q 009072 136 QQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLG-----DSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWD 210 (544)
Q Consensus 136 ~~lW~eky~P~~~~dLv~~~~~~~~l~~wL~~~~~-----~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~ 210 (544)
...|.......++.|+.+.+...+++.+.+..... ...+..+ +.++|+||||||||++++++|++++.+++.++
T Consensus 139 ~~~~~~~~~~~~~~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~-~gill~G~~G~GKt~~~~~~a~~~~~~f~~is 217 (644)
T PRK10733 139 ARMLTEDQIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIP-KGVLMVGPPGTGKTLLAKAIAGEAKVPFFTIS 217 (644)
T ss_pred ccccCchhhhCcHHHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCC-CcEEEECCCCCCHHHHHHHHHHHcCCCEEEEe
Confidence 34455555667899999999888888776654211 0112333 67999999999999999999999999999888
Q ss_pred CCCchhhhhhhhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCch---------hHHHHH
Q 009072 211 TPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGR---------TAFERL 281 (544)
Q Consensus 211 ~s~~~~~~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~---------~~~~~~ 281 (544)
.++... ...+ .....++..+..+... .|+||||||+|.+..+ .....+
T Consensus 218 ~~~~~~-------~~~g----~~~~~~~~~f~~a~~~------------~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ 274 (644)
T PRK10733 218 GSDFVE-------MFVG----VGASRVRDMFEQAKKA------------APCIIFIDEIDAVGRQRGAGLGGGHDEREQT 274 (644)
T ss_pred hHHhHH-------hhhc----ccHHHHHHHHHHHHhc------------CCcEEEehhHhhhhhccCCCCCCCchHHHHH
Confidence 764211 0111 1224566667666432 4889999999987321 112223
Q ss_pred HHHHHHHHhc--CCCcEEEEEccCCCCCCCCccccchHHHHHHHhhc--CceeEEecCCCHHHHHHHHHHHHHHhCCCCC
Q 009072 282 RQCLLLLVRS--THIPTAVVLTECGKADSVDSTAQSFEELQSILVDA--GARKVALNPITNGSIKRTLSKICRQEQYSLS 357 (544)
Q Consensus 282 ~~~L~~~~~~--~~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~--~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~ 357 (544)
.+.|+..++. ....+|+|++++. .+.+.+.+.|+ ....|.|..|+.++..++|...+....+. .
T Consensus 275 ln~lL~~mdg~~~~~~vivIaaTN~-----------p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~-~ 342 (644)
T PRK10733 275 LNQMLVEMDGFEGNEGIIVIAATNR-----------PDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLA-P 342 (644)
T ss_pred HHHHHHhhhcccCCCCeeEEEecCC-----------hhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCC-C
Confidence 3333332332 2234666665532 22233333321 14689999999999999999887664432 2
Q ss_pred HHHHHHHHHHcCC----cHHHHHHHHHHhccCC
Q 009072 358 TEQIDLVAQASGG----DIRQAITSLQFSSLKQ 386 (544)
Q Consensus 358 ~~~l~~Ia~~s~G----DiR~aIn~Lq~~~~~~ 386 (544)
+..+..+++.+.| ||...++.....+.+.
T Consensus 343 ~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~ 375 (644)
T PRK10733 343 DIDAAIIARGTPGFSGADLANLVNEAALFAARG 375 (644)
T ss_pred cCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHc
Confidence 2346778988888 9999999888776654
No 125
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=99.44 E-value=2.4e-12 Score=131.84 Aligned_cols=184 Identities=16% Similarity=0.157 Sum_probs=123.0
Q ss_pred ChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEE----------------EEeCCCchhh
Q 009072 154 QRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLY----------------EWDTPTPTIW 217 (544)
Q Consensus 154 ~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~vi----------------ei~~s~~~~~ 217 (544)
+...-+++...+.. |+.+ +.+||+||+|+||+++|..+|+.+-+.-- .-+.||....
T Consensus 7 l~~~~~~l~~~~~~------~rl~-HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i 79 (334)
T PRK07993 7 LRPDYEQLVGSYQA------GRGH-HALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTL 79 (334)
T ss_pred ChHHHHHHHHHHHc------CCcc-eEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEE
Confidence 44455555555544 6666 89999999999999999999999855310 1111221100
Q ss_pred hhhhhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHHHHHhcCCCcEE
Q 009072 218 QEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPTA 297 (544)
Q Consensus 218 ~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~~~~~~~~piI 297 (544)
. ...+ ...-..+.++++.+.+...+ ..+..+|+|||++|.|+... .++|++.+++.+..++
T Consensus 80 ~-----p~~~-~~~I~idqiR~l~~~~~~~~--------~~g~~kV~iI~~ae~m~~~A-----aNaLLKtLEEPp~~t~ 140 (334)
T PRK07993 80 T-----PEKG-KSSLGVDAVREVTEKLYEHA--------RLGGAKVVWLPDAALLTDAA-----ANALLKTLEEPPENTW 140 (334)
T ss_pred e-----cccc-cccCCHHHHHHHHHHHhhcc--------ccCCceEEEEcchHhhCHHH-----HHHHHHHhcCCCCCeE
Confidence 0 0000 01123467777777665332 22457899999999987543 3789999999877666
Q ss_pred EEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHH
Q 009072 298 VVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIRQAIT 377 (544)
Q Consensus 298 iI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~l~~Ia~~s~GDiR~aIn 377 (544)
||..+.+. -..++.+.+| |+.+.|.+++.+++...|... ..++++.+..++..++|++..|+.
T Consensus 141 fiL~t~~~----------~~lLpTIrSR--Cq~~~~~~~~~~~~~~~L~~~-----~~~~~~~a~~~~~la~G~~~~Al~ 203 (334)
T PRK07993 141 FFLACREP----------ARLLATLRSR--CRLHYLAPPPEQYALTWLSRE-----VTMSQDALLAALRLSAGAPGAALA 203 (334)
T ss_pred EEEEECCh----------hhChHHHHhc--cccccCCCCCHHHHHHHHHHc-----cCCCHHHHHHHHHHcCCCHHHHHH
Confidence 66654221 1223455554 999999999999999988642 246777788899999999999987
Q ss_pred HHH
Q 009072 378 SLQ 380 (544)
Q Consensus 378 ~Lq 380 (544)
.++
T Consensus 204 l~~ 206 (334)
T PRK07993 204 LLQ 206 (334)
T ss_pred Hhc
Confidence 764
No 126
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.44 E-value=6e-13 Score=152.18 Aligned_cols=208 Identities=17% Similarity=0.192 Sum_probs=142.1
Q ss_pred cccccCCCCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHh----------CCeEEE
Q 009072 139 WAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL----------GARLYE 208 (544)
Q Consensus 139 W~eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~el----------g~~vie 208 (544)
++++-+...+++++|+++.++++..+|.... ++++||+||||||||++|+.+|+.+ +..+++
T Consensus 169 l~~~a~~~~~~~~igr~~ei~~~~~~L~r~~--------~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~ 240 (821)
T CHL00095 169 LTKEAIDGNLDPVIGREKEIERVIQILGRRT--------KNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT 240 (821)
T ss_pred HHHHHHcCCCCCCCCcHHHHHHHHHHHcccc--------cCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE
Confidence 4555567789999999999999999986532 2678999999999999999999986 366777
Q ss_pred EeCCCchhhhhhhhccccCcccc-cchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhH---HHHHHHH
Q 009072 209 WDTPTPTIWQEYMHNCKTGLEYT-SKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTA---FERLRQC 284 (544)
Q Consensus 209 i~~s~~~~~~e~l~~~~~g~~~~-s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~---~~~~~~~ 284 (544)
++... ...|..|. .....++.+++.+... .+.||||||++.+.+.+. -..+.+.
T Consensus 241 l~~~~----------l~ag~~~~ge~e~rl~~i~~~~~~~------------~~~ILfiDEih~l~~~g~~~g~~~~a~l 298 (821)
T CHL00095 241 LDIGL----------LLAGTKYRGEFEERLKRIFDEIQEN------------NNIILVIDEVHTLIGAGAAEGAIDAANI 298 (821)
T ss_pred eeHHH----------HhccCCCccHHHHHHHHHHHHHHhc------------CCeEEEEecHHHHhcCCCCCCcccHHHH
Confidence 66432 22333332 2345667777766432 367999999997743211 0123456
Q ss_pred HHHHHhcCCCcEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHH----hCCCCCHHH
Q 009072 285 LLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQ----EQYSLSTEQ 360 (544)
Q Consensus 285 L~~~~~~~~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~----e~~~i~~~~ 360 (544)
|...+..+.. .||.+++. +.|....+.-+.+.+ ++..|.+..|+.++...+++.+... .++.+++++
T Consensus 299 Lkp~l~rg~l--~~IgaTt~-----~ey~~~ie~D~aL~r--Rf~~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~dea 369 (821)
T CHL00095 299 LKPALARGEL--QCIGATTL-----DEYRKHIEKDPALER--RFQPVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKA 369 (821)
T ss_pred hHHHHhCCCc--EEEEeCCH-----HHHHHHHhcCHHHHh--cceEEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHH
Confidence 7777776643 44444321 112222222234444 3788999999999988888876543 356789999
Q ss_pred HHHHHHHcCCc------HHHHHHHHHHhccC
Q 009072 361 IDLVAQASGGD------IRQAITSLQFSSLK 385 (544)
Q Consensus 361 l~~Ia~~s~GD------iR~aIn~Lq~~~~~ 385 (544)
+..++..|+|- .++||..|..+|..
T Consensus 370 l~~i~~ls~~yi~~r~lPdkaidlld~a~a~ 400 (821)
T CHL00095 370 LEAAAKLSDQYIADRFLPDKAIDLLDEAGSR 400 (821)
T ss_pred HHHHHHHhhccCccccCchHHHHHHHHHHHH
Confidence 99999998763 67799999887753
No 127
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=2.9e-12 Score=137.46 Aligned_cols=205 Identities=15% Similarity=0.235 Sum_probs=131.3
Q ss_pred CCCCcchhccChHHHHHHHHHHHHhhcCCC------CCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCCchhh
Q 009072 144 KPRSLEELAVQRKKVEEVRAWFEERLGDSK------DKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIW 217 (544)
Q Consensus 144 ~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~------g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~~~~~ 217 (544)
.-.+|.|++|.++.++++.+.+.- ++.++ ++.| +.+||+||||+|||.+|+++|.+.+.++..+..|+.-.+
T Consensus 145 ~~v~F~DVAG~dEakeel~EiVdf-Lk~p~ky~~lGakiP-kGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVem 222 (596)
T COG0465 145 VKVTFADVAGVDEAKEELSELVDF-LKNPKKYQALGAKIP-KGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM 222 (596)
T ss_pred cCcChhhhcCcHHHHHHHHHHHHH-HhCchhhHhcccccc-cceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhh
Confidence 346999999999998888876643 22222 3444 899999999999999999999999999999998875433
Q ss_pred hhhhhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchh---------HHHHHH-HHHHH
Q 009072 218 QEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRT---------AFERLR-QCLLL 287 (544)
Q Consensus 218 ~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~---------~~~~~~-~~L~~ 287 (544)
.-|++. ...++.++++++.+ |+||+|||+|.+.... ..+... +.|.+
T Consensus 223 -------fVGvGA----sRVRdLF~qAkk~a------------P~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvE 279 (596)
T COG0465 223 -------FVGVGA----SRVRDLFEQAKKNA------------PCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVE 279 (596)
T ss_pred -------hcCCCc----HHHHHHHHHhhccC------------CCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhh
Confidence 223322 56788888887653 8999999999874321 111122 22333
Q ss_pred HHhcC-CCcEEEEEccCCCCCCCCccccchHHH-HHHHhhc-CceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHH
Q 009072 288 LVRST-HIPTAVVLTECGKADSVDSTAQSFEEL-QSILVDA-GARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLV 364 (544)
Q Consensus 288 ~~~~~-~~piIiI~t~~~~~~~~d~~~~~l~~l-~~ll~r~-~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~l~~I 364 (544)
+-... ..++|+|+++ +.. +-+ .++++.. ....|....|+.....++|+-.+....+. .+-.+..|
T Consensus 280 mDGF~~~~gviviaaT-NRp----------dVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~-~~Vdl~~i 347 (596)
T COG0465 280 MDGFGGNEGVIVIAAT-NRP----------DVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLA-EDVDLKKI 347 (596)
T ss_pred hccCCCCCceEEEecC-CCc----------ccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCC-CcCCHHHH
Confidence 32222 2356666654 221 222 3344322 25678888888888888888444443333 22234447
Q ss_pred HHH----cCCcHHHHHHHHHHhccC
Q 009072 365 AQA----SGGDIRQAITSLQFSSLK 385 (544)
Q Consensus 365 a~~----s~GDiR~aIn~Lq~~~~~ 385 (544)
++. ++.|+-..+|.--.++.+
T Consensus 348 Ar~tpGfsGAdL~nl~NEAal~aar 372 (596)
T COG0465 348 ARGTPGFSGADLANLLNEAALLAAR 372 (596)
T ss_pred hhhCCCcccchHhhhHHHHHHHHHH
Confidence 766 455788877765555543
No 128
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.43 E-value=1.4e-12 Score=151.82 Aligned_cols=191 Identities=9% Similarity=0.046 Sum_probs=115.2
Q ss_pred CCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCCchhhh--hhhhc-cccC-----------------------
Q 009072 174 DKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIWQ--EYMHN-CKTG----------------------- 227 (544)
Q Consensus 174 g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~~~~~~--e~l~~-~~~g----------------------- 227 (544)
|..+++.+||+||||||||.+|+++|.+.+++++.+.+++.-.-. .+... +..|
T Consensus 1626 Gl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~e~~ 1705 (2281)
T CHL00206 1626 ALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELLTMM 1705 (2281)
T ss_pred CCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccchhhhhhc
Confidence 445569999999999999999999999999999999887632100 00000 0000
Q ss_pred ------cccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHHHHHhc-----CCCcE
Q 009072 228 ------LEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRS-----THIPT 296 (544)
Q Consensus 228 ------~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~~~~~-----~~~pi 296 (544)
+........++..++.|++.+ ||||+|||||.+...+.-......|+..+.. ....+
T Consensus 1706 n~~~~~m~~~e~~~rIr~lFelARk~S------------PCIIFIDEIDaL~~~ds~~ltL~qLLneLDg~~~~~s~~~V 1773 (2281)
T CHL00206 1706 NALTMDMMPKIDRFYITLQFELAKAMS------------PCIIWIPNIHDLNVNESNYLSLGLLVNSLSRDCERCSTRNI 1773 (2281)
T ss_pred chhhhhhhhhhhHHHHHHHHHHHHHCC------------CeEEEEEchhhcCCCccceehHHHHHHHhccccccCCCCCE
Confidence 000011123667788877653 9999999999987643211112334333332 22346
Q ss_pred EEEEccCCCCCCCCccccchHHHHHHHh--hcCceeEEecCCCHHHHHHHHHHHHHHhCCCCCHH--HHHHHHHHcC---
Q 009072 297 AVVLTECGKADSVDSTAQSFEELQSILV--DAGARKVALNPITNGSIKRTLSKICRQEQYSLSTE--QIDLVAQASG--- 369 (544)
Q Consensus 297 IiI~t~~~~~~~~d~~~~~l~~l~~ll~--r~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~--~l~~Ia~~s~--- 369 (544)
|+|+++ +..+..| +++++ |+ ...|.+..|+..+.++++...+...++.+..+ .++.+|..+.
T Consensus 1774 IVIAAT-NRPD~LD---------PALLRPGRF-DR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfS 1842 (2281)
T CHL00206 1774 LVIAST-HIPQKVD---------PALIAPNKL-NTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSN 1842 (2281)
T ss_pred EEEEeC-CCcccCC---------HhHcCCCCC-CeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCC
Confidence 666654 3222222 34443 22 56788888888777777765444455555433 4788888864
Q ss_pred -CcHHHHHHHHHHhccCCC
Q 009072 370 -GDIRQAITSLQFSSLKQD 387 (544)
Q Consensus 370 -GDiR~aIn~Lq~~~~~~~ 387 (544)
.||...+|..-..+...+
T Consensus 1843 GADLanLvNEAaliAirq~ 1861 (2281)
T CHL00206 1843 ARDLVALTNEALSISITQK 1861 (2281)
T ss_pred HHHHHHHHHHHHHHHHHcC
Confidence 478888776666655443
No 129
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.43 E-value=2.6e-12 Score=146.16 Aligned_cols=188 Identities=14% Similarity=0.165 Sum_probs=116.3
Q ss_pred hhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCCchhhhhhhhccccCcc
Q 009072 150 ELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIWQEYMHNCKTGLE 229 (544)
Q Consensus 150 dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~~~~~~e~l~~~~~g~~ 229 (544)
++.|+++.++++.+|+..+... +....++++|+||||||||++|+++|++++.+++.++........+.........
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~--~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~~~~~- 397 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLR--GKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHRRTYV- 397 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhh--cCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCCCcee-
Confidence 4778999999999998765432 2233358999999999999999999999999999988765332222111100001
Q ss_pred cccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHHHHHhc---------------CCC
Q 009072 230 YTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRS---------------THI 294 (544)
Q Consensus 230 ~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~~~~~---------------~~~ 294 (544)
......+.+.+..+. ....||||||+|.+..... ....++|+++++. ...
T Consensus 398 -g~~~g~i~~~l~~~~-------------~~~~villDEidk~~~~~~-~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s 462 (775)
T TIGR00763 398 -GAMPGRIIQGLKKAK-------------TKNPLFLLDEIDKIGSSFR-GDPASALLEVLDPEQNNAFSDHYLDVPFDLS 462 (775)
T ss_pred -CCCCchHHHHHHHhC-------------cCCCEEEEechhhcCCccC-CCHHHHHHHhcCHHhcCccccccCCceeccC
Confidence 111122333333321 1223899999999864210 0112344444432 012
Q ss_pred cEEEEEccCCCCCCCCccccchHHH-HHHHhhcCceeEEecCCCHHHHHHHHHHHHH-----H-----hCCCCCHHHHHH
Q 009072 295 PTAVVLTECGKADSVDSTAQSFEEL-QSILVDAGARKVALNPITNGSIKRTLSKICR-----Q-----EQYSLSTEQIDL 363 (544)
Q Consensus 295 piIiI~t~~~~~~~~d~~~~~l~~l-~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~-----~-----e~~~i~~~~l~~ 363 (544)
.++||+|++. ...+ +++++| +.+|.|++++.++...++++.+. . +++.++++++..
T Consensus 463 ~v~~I~TtN~-----------~~~i~~~L~~R--~~vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~ 529 (775)
T TIGR00763 463 KVIFIATANS-----------IDTIPRPLLDR--MEVIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLL 529 (775)
T ss_pred CEEEEEecCC-----------chhCCHHHhCC--eeEEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHH
Confidence 4566665522 1112 455555 68999999999999888876542 1 235789999999
Q ss_pred HHHHc
Q 009072 364 VAQAS 368 (544)
Q Consensus 364 Ia~~s 368 (544)
|++..
T Consensus 530 i~~~~ 534 (775)
T TIGR00763 530 LIKYY 534 (775)
T ss_pred HHHhc
Confidence 99863
No 130
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.42 E-value=4.2e-12 Score=137.20 Aligned_cols=198 Identities=20% Similarity=0.246 Sum_probs=123.5
Q ss_pred CCcchhccChHH---HHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHh-----CCeEEEEeCCCchhh
Q 009072 146 RSLEELAVQRKK---VEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL-----GARLYEWDTPTPTIW 217 (544)
Q Consensus 146 ~~~~dLv~~~~~---~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~el-----g~~viei~~s~~~~~ 217 (544)
.+|+++++.+.. ......++..+ +... +.|+|||++|+|||+|++++|+++ ++.++.++..+..
T Consensus 285 ~TFDnFvvG~sN~~A~aaa~avae~~-----~~~~-NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~-- 356 (617)
T PRK14086 285 YTFDTFVIGASNRFAHAAAVAVAEAP-----AKAY-NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFT-- 356 (617)
T ss_pred CCHhhhcCCCccHHHHHHHHHHHhCc-----cccC-CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHH--
Confidence 478888755432 22333333321 2222 469999999999999999999986 5677776653311
Q ss_pred hhhhhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhH-HHHHHHHHHHHHhcCCCcE
Q 009072 218 QEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTA-FERLRQCLLLLVRSTHIPT 296 (544)
Q Consensus 218 ~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~-~~~~~~~L~~~~~~~~~pi 296 (544)
.+....... .....|..+ | ....+|||||++.+.+... -..+...+..+.+..+ +
T Consensus 357 ~el~~al~~--------~~~~~f~~~---y-----------~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk-~- 412 (617)
T PRK14086 357 NEFINSIRD--------GKGDSFRRR---Y-----------REMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANK-Q- 412 (617)
T ss_pred HHHHHHHHh--------ccHHHHHHH---h-----------hcCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCC-C-
Confidence 011111000 011222222 2 2245999999999866432 2334455555555443 3
Q ss_pred EEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHH
Q 009072 297 AVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIRQAI 376 (544)
Q Consensus 297 IiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~l~~Ia~~s~GDiR~aI 376 (544)
|+|+++....... .....|.+.+.. ..++.+.+|+.+....+|++.+...++.++++++++|+....+|+|...
T Consensus 413 IIITSd~~P~eL~----~l~~rL~SRf~~--GLvv~I~~PD~EtR~aIL~kka~~r~l~l~~eVi~yLa~r~~rnvR~Le 486 (617)
T PRK14086 413 IVLSSDRPPKQLV----TLEDRLRNRFEW--GLITDVQPPELETRIAILRKKAVQEQLNAPPEVLEFIASRISRNIRELE 486 (617)
T ss_pred EEEecCCChHhhh----hccHHHHhhhhc--CceEEcCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhccCCHHHHH
Confidence 4556654322111 112334444443 6789999999999999999999999999999999999999999988765
Q ss_pred HHHHH
Q 009072 377 TSLQF 381 (544)
Q Consensus 377 n~Lq~ 381 (544)
..|.-
T Consensus 487 gaL~r 491 (617)
T PRK14086 487 GALIR 491 (617)
T ss_pred HHHHH
Confidence 55543
No 131
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=7.1e-12 Score=129.34 Aligned_cols=207 Identities=14% Similarity=0.190 Sum_probs=138.9
Q ss_pred cccCCCCcchhccChHHHHHHHHHHHHhhcCCC----CCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCCchh
Q 009072 141 EKYKPRSLEELAVQRKKVEEVRAWFEERLGDSK----DKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTI 216 (544)
Q Consensus 141 eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~----g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~~~~ 216 (544)
+.-++..++|++|.+...+.+.+.+.-....+. -+.+.+.+||.||||+|||++++++|.|.+..+..+.++...
T Consensus 145 ~~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLt- 223 (428)
T KOG0740|consen 145 DTLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLREPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLT- 223 (428)
T ss_pred ccCCcccccCCcchhhHHHHhhhhhhhcccchHhhhccccccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhh-
Confidence 455678889999987777777766544332211 234458999999999999999999999999999998887532
Q ss_pred hhhhhhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCch------hHHHHHH-HHHHHHH
Q 009072 217 WQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGR------TAFERLR-QCLLLLV 289 (544)
Q Consensus 217 ~~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~------~~~~~~~-~~L~~~~ 289 (544)
+.........++.++.-++. ..|.||+|||+|.+... ..-+++. +.|.++.
T Consensus 224 ----------sK~~Ge~eK~vralf~vAr~------------~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~ 281 (428)
T KOG0740|consen 224 ----------SKYVGESEKLVRALFKVARS------------LQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFD 281 (428)
T ss_pred ----------hhccChHHHHHHHHHHHHHh------------cCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhc
Confidence 22222233556666665543 35889999999987332 1123443 5555554
Q ss_pred hcCC--CcEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 009072 290 RSTH--IPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQA 367 (544)
Q Consensus 290 ~~~~--~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~l~~Ia~~ 367 (544)
.... .+.|++++.++. .-+...++++|+ ...+.+++|+.+....++...+...+..+.+..+..|++.
T Consensus 282 ~~~s~~~drvlvigaTN~---------P~e~Dea~~Rrf-~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~ 351 (428)
T KOG0740|consen 282 GKNSAPDDRVLVIGATNR---------PWELDEAARRRF-VKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKV 351 (428)
T ss_pred cccCCCCCeEEEEecCCC---------chHHHHHHHHHh-hceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHH
Confidence 3322 235555555432 222224555554 5667789999999999999998888778888999999988
Q ss_pred c----CCcHHHHHHHHH
Q 009072 368 S----GGDIRQAITSLQ 380 (544)
Q Consensus 368 s----~GDiR~aIn~Lq 380 (544)
+ +|||.+.+.-.+
T Consensus 352 Tegysgsdi~~l~kea~ 368 (428)
T KOG0740|consen 352 TEGYSGSDITALCKEAA 368 (428)
T ss_pred hcCcccccHHHHHHHhh
Confidence 4 567776655443
No 132
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.41 E-value=2.2e-12 Score=148.08 Aligned_cols=213 Identities=17% Similarity=0.193 Sum_probs=144.5
Q ss_pred CCCCcccccCCCCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHh----------CC
Q 009072 135 TQQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL----------GA 204 (544)
Q Consensus 135 ~~~lW~eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~el----------g~ 204 (544)
....++++.+|..+++++|+++.++++...|... ..++++|+||||||||++|+.+|+.+ ++
T Consensus 159 ~~~~l~~~~~~~~~~~~igr~~ei~~~~~~l~r~--------~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~ 230 (852)
T TIGR03346 159 YARDLTERAREGKLDPVIGRDEEIRRTIQVLSRR--------TKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNK 230 (852)
T ss_pred HhhhHHHHhhCCCCCcCCCcHHHHHHHHHHHhcC--------CCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCC
Confidence 3456888999999999999999998888877542 12678999999999999999999986 55
Q ss_pred eEEEEeCCCchhhhhhhhccccCcccc-cchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchh---HHHH
Q 009072 205 RLYEWDTPTPTIWQEYMHNCKTGLEYT-SKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRT---AFER 280 (544)
Q Consensus 205 ~viei~~s~~~~~~e~l~~~~~g~~~~-s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~---~~~~ 280 (544)
.++.++... ...|..+. .....+..++..+... ..+.||||||++.+.+.+ .-..
T Consensus 231 ~~~~l~~~~----------l~a~~~~~g~~e~~l~~~l~~~~~~-----------~~~~ILfIDEih~l~~~g~~~~~~d 289 (852)
T TIGR03346 231 RLLALDMGA----------LIAGAKYRGEFEERLKAVLNEVTKS-----------EGQIILFIDELHTLVGAGKAEGAMD 289 (852)
T ss_pred eEEEeeHHH----------HhhcchhhhhHHHHHHHHHHHHHhc-----------CCCeEEEeccHHHhhcCCCCcchhH
Confidence 666554321 11122221 2334566777766433 347899999999875311 1122
Q ss_pred HHHHHHHHHhcCCCcEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHH----hCCCC
Q 009072 281 LRQCLLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQ----EQYSL 356 (544)
Q Consensus 281 ~~~~L~~~~~~~~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~----e~~~i 356 (544)
..+.|..++..+ .+.||.+++. +.+...+....++.+| +..|.+..|+.++...+|+.+..+ .++.+
T Consensus 290 ~~~~Lk~~l~~g--~i~~IgaTt~-----~e~r~~~~~d~al~rR--f~~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~ 360 (852)
T TIGR03346 290 AGNMLKPALARG--ELHCIGATTL-----DEYRKYIEKDAALERR--FQPVFVDEPTVEDTISILRGLKERYEVHHGVRI 360 (852)
T ss_pred HHHHhchhhhcC--ceEEEEeCcH-----HHHHHHhhcCHHHHhc--CCEEEeCCCCHHHHHHHHHHHHHHhccccCCCC
Confidence 446666666555 3455555432 1111112223445554 678999999999999999877654 35678
Q ss_pred CHHHHHHHHHHcCC---c---HHHHHHHHHHhccC
Q 009072 357 STEQIDLVAQASGG---D---IRQAITSLQFSSLK 385 (544)
Q Consensus 357 ~~~~l~~Ia~~s~G---D---iR~aIn~Lq~~~~~ 385 (544)
+++++..++..|.+ | +.+||..|..+|..
T Consensus 361 ~d~~i~~~~~ls~~yi~~r~lPdkAidlld~a~a~ 395 (852)
T TIGR03346 361 TDPAIVAAATLSHRYITDRFLPDKAIDLIDEAAAR 395 (852)
T ss_pred CHHHHHHHHHhccccccccCCchHHHHHHHHHHHH
Confidence 99999999988765 3 67899999888764
No 133
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.41 E-value=2.8e-12 Score=146.66 Aligned_cols=212 Identities=18% Similarity=0.181 Sum_probs=142.0
Q ss_pred CCCcccccCCCCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHh----------CCe
Q 009072 136 QQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL----------GAR 205 (544)
Q Consensus 136 ~~lW~eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~el----------g~~ 205 (544)
...++++.+|..+++++|+++.++++...|.... .+.+||+||||||||++|+.+|..+ ++.
T Consensus 165 ~~~l~~~~r~~~l~~vigr~~ei~~~i~iL~r~~--------~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~ 236 (857)
T PRK10865 165 TIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRT--------KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRR 236 (857)
T ss_pred hhhHHHHHhcCCCCcCCCCHHHHHHHHHHHhcCC--------cCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCE
Confidence 4567888899999999999999998888876531 2579999999999999999999997 667
Q ss_pred EEEEeCCCchhhhhhhhccccCccc-ccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchh---HHHHH
Q 009072 206 LYEWDTPTPTIWQEYMHNCKTGLEY-TSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRT---AFERL 281 (544)
Q Consensus 206 viei~~s~~~~~~e~l~~~~~g~~~-~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~---~~~~~ 281 (544)
++.++... ...|..+ ......++.+++.+... ..+.||||||++.+.+.+ .-...
T Consensus 237 ~~~l~l~~----------l~ag~~~~g~~e~~lk~~~~~~~~~-----------~~~~ILfIDEih~l~~~~~~~~~~d~ 295 (857)
T PRK10865 237 VLALDMGA----------LVAGAKYRGEFEERLKGVLNDLAKQ-----------EGNVILFIDELHTMVGAGKADGAMDA 295 (857)
T ss_pred EEEEehhh----------hhhccchhhhhHHHHHHHHHHHHHc-----------CCCeEEEEecHHHhccCCCCccchhH
Confidence 76665432 1122222 22334567777765433 347899999999885321 01123
Q ss_pred HHHHHHHHhcCCCcEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHHh----CCCCC
Q 009072 282 RQCLLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQE----QYSLS 357 (544)
Q Consensus 282 ~~~L~~~~~~~~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e----~~~i~ 357 (544)
.+.|...+..+ .+.||.+++. +.+...++...++.+| ++.|.+..|+.++...+|+.+..+. ++.++
T Consensus 296 ~~~lkp~l~~g--~l~~IgaTt~-----~e~r~~~~~d~al~rR--f~~i~v~eP~~~~~~~iL~~l~~~~e~~~~v~~~ 366 (857)
T PRK10865 296 GNMLKPALARG--ELHCVGATTL-----DEYRQYIEKDAALERR--FQKVFVAEPSVEDTIAILRGLKERYELHHHVQIT 366 (857)
T ss_pred HHHhcchhhcC--CCeEEEcCCC-----HHHHHHhhhcHHHHhh--CCEEEeCCCCHHHHHHHHHHHhhhhccCCCCCcC
Confidence 45666666665 3466665542 1122222333455554 6688899999999999988776542 56788
Q ss_pred HHHHHHHHHHcCCc------HHHHHHHHHHhccC
Q 009072 358 TEQIDLVAQASGGD------IRQAITSLQFSSLK 385 (544)
Q Consensus 358 ~~~l~~Ia~~s~GD------iR~aIn~Lq~~~~~ 385 (544)
++++...+..+++- ...|+..+...+..
T Consensus 367 d~a~~~a~~ls~ry~~~~~~pdkAi~LiD~aaa~ 400 (857)
T PRK10865 367 DPAIVAAATLSHRYIADRQLPDKAIDLIDEAASS 400 (857)
T ss_pred HHHHHHHHHHhhccccCCCCChHHHHHHHHHhcc
Confidence 88888877776543 35566666666653
No 134
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.40 E-value=3.1e-12 Score=113.05 Aligned_cols=100 Identities=22% Similarity=0.328 Sum_probs=71.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCCchhhhhhhhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCC
Q 009072 181 LVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKS 260 (544)
Q Consensus 181 lLL~GPpG~GKTtla~~lA~elg~~viei~~s~~~~~~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~ 260 (544)
+||+||||||||++|+.+|+.++.++++++.+... +.........+..++..+.... +
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~-----------~~~~~~~~~~i~~~~~~~~~~~-----------~ 58 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELI-----------SSYAGDSEQKIRDFFKKAKKSA-----------K 58 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHH-----------TSSTTHHHHHHHHHHHHHHHTS-----------T
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccc-----------cccccccccccccccccccccc-----------c
Confidence 68999999999999999999999999999987521 1122334467788888876441 3
Q ss_pred ceEEEEecCCCCCchh------HHHHHHHHHHHHHhcCCC---cEEEEEcc
Q 009072 261 SAILLIDDLPVTNGRT------AFERLRQCLLLLVRSTHI---PTAVVLTE 302 (544)
Q Consensus 261 ~~vIlIDEid~l~~~~------~~~~~~~~L~~~~~~~~~---piIiI~t~ 302 (544)
|+||+|||+|.+.... ....+.+.|...++.... ++++|+++
T Consensus 59 ~~vl~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~tt 109 (132)
T PF00004_consen 59 PCVLFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATT 109 (132)
T ss_dssp SEEEEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEE
T ss_pred ceeeeeccchhcccccccccccccccccceeeecccccccccccceeEEee
Confidence 7899999999885542 223455666666665544 46666655
No 135
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=99.39 E-value=1.6e-11 Score=124.67 Aligned_cols=190 Identities=14% Similarity=0.129 Sum_probs=121.4
Q ss_pred cChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCCc-h-hhhhhh---hc----
Q 009072 153 VQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTP-T-IWQEYM---HN---- 223 (544)
Q Consensus 153 ~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~~-~-~~~e~l---~~---- 223 (544)
++....+.+...+.. |+.+ +.+||+||+|+||+++|+.+|+.+.+.--.-..+.. + ...... +.
T Consensus 6 W~~~~~~~l~~~~~~------~rl~-HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~ 78 (325)
T PRK06871 6 WLQPTYQQITQAFQQ------GLGH-HALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHI 78 (325)
T ss_pred chHHHHHHHHHHHHc------CCcc-eeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEE
Confidence 445555666666654 6665 899999999999999999999998653210011110 0 000000 00
Q ss_pred cccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHHHHHhcCCCcEEEEEccC
Q 009072 224 CKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPTAVVLTEC 303 (544)
Q Consensus 224 ~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~~~~~~~~piIiI~t~~ 303 (544)
.....+..-..+.++++.+.+...+ ..++.+|+|||++|.|+.. ..++|++.+++.+..++||..+.
T Consensus 79 i~p~~~~~I~id~iR~l~~~~~~~~--------~~g~~KV~iI~~a~~m~~~-----AaNaLLKtLEEPp~~~~fiL~t~ 145 (325)
T PRK06871 79 LEPIDNKDIGVDQVREINEKVSQHA--------QQGGNKVVYIQGAERLTEA-----AANALLKTLEEPRPNTYFLLQAD 145 (325)
T ss_pred EccccCCCCCHHHHHHHHHHHhhcc--------ccCCceEEEEechhhhCHH-----HHHHHHHHhcCCCCCeEEEEEEC
Confidence 0000011123567777776665332 2245789999999999754 34789999999887777776543
Q ss_pred CCCCCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHH
Q 009072 304 GKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIRQAITSL 379 (544)
Q Consensus 304 ~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~l~~Ia~~s~GDiR~aIn~L 379 (544)
+. -..++.+.+| |..+.|+|++.+++...|.... ..+...+..++..++|.+..|+..+
T Consensus 146 ~~----------~~llpTI~SR--C~~~~~~~~~~~~~~~~L~~~~-----~~~~~~~~~~~~l~~g~p~~A~~~~ 204 (325)
T PRK06871 146 LS----------AALLPTIYSR--CQTWLIHPPEEQQALDWLQAQS-----SAEISEILTALRINYGRPLLALTFL 204 (325)
T ss_pred Ch----------HhCchHHHhh--ceEEeCCCCCHHHHHHHHHHHh-----ccChHHHHHHHHHcCCCHHHHHHHh
Confidence 21 1223455554 9999999999999999998653 2344456677788999998776655
No 136
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.39 E-value=4.9e-11 Score=114.45 Aligned_cols=206 Identities=17% Similarity=0.214 Sum_probs=133.4
Q ss_pred ccccCCCCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeCCCchh
Q 009072 140 AEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTPTPTI 216 (544)
Q Consensus 140 ~eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~el---g~~viei~~s~~~~ 216 (544)
+....|..+++|+|-+...+.|.+-...... |.+. +++||+|++|||||++++++..++ |+.++++...+.
T Consensus 18 i~~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~---G~pa-nnvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L-- 91 (249)
T PF05673_consen 18 IKHPDPIRLDDLIGIERQKEALIENTEQFLQ---GLPA-NNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDL-- 91 (249)
T ss_pred cCCCCCCCHHHhcCHHHHHHHHHHHHHHHHc---CCCC-cceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHh--
Confidence 3456688999999999999999888877765 6655 899999999999999999999976 788998865331
Q ss_pred hhhhhhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHHHHHhcCCCcE
Q 009072 217 WQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPT 296 (544)
Q Consensus 217 ~~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~~~~~~~~pi 296 (544)
..+..+++.++.. ..+-||++||+.--.....+..+...|.--++..+ ..
T Consensus 92 ------------------~~l~~l~~~l~~~-----------~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P-~N 141 (249)
T PF05673_consen 92 ------------------GDLPELLDLLRDR-----------PYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARP-DN 141 (249)
T ss_pred ------------------ccHHHHHHHHhcC-----------CCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCC-Cc
Confidence 2244455555422 34679999997643333334444333333333333 34
Q ss_pred EEEEccCCCCCCCC-----------ccccchHHH---HHHHhhcCceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHH
Q 009072 297 AVVLTECGKADSVD-----------STAQSFEEL---QSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQID 362 (544)
Q Consensus 297 IiI~t~~~~~~~~d-----------~~~~~l~~l---~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~l~ 362 (544)
|+|.++++..+... ...+.-+.+ -++-.|+ ...|.|.+++.++..+++...+.+.|+.++++.+.
T Consensus 142 vliyATSNRRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRF-GL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~ 220 (249)
T PF05673_consen 142 VLIYATSNRRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRF-GLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELR 220 (249)
T ss_pred EEEEEecchhhccchhhhhccCCCccccCcchHHHHHHhHHHhC-CcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 44444444322110 011222222 3455677 55899999999999999999999999999965543
Q ss_pred HHH-----HHcCCcHHHHHHHHHHh
Q 009072 363 LVA-----QASGGDIRQAITSLQFS 382 (544)
Q Consensus 363 ~Ia-----~~s~GDiR~aIn~Lq~~ 382 (544)
.-| ...+-.-|.|-.-.+.+
T Consensus 221 ~~Al~wa~~rg~RSGRtA~QF~~~l 245 (249)
T PF05673_consen 221 QEALQWALRRGGRSGRTARQFIDDL 245 (249)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 333 22333455554444433
No 137
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=1.2e-11 Score=126.67 Aligned_cols=167 Identities=19% Similarity=0.220 Sum_probs=107.9
Q ss_pred cCCCCcchhccChHHHHHHHHHHHHhhcCC-----CCCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCCchhh
Q 009072 143 YKPRSLEELAVQRKKVEEVRAWFEERLGDS-----KDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIW 217 (544)
Q Consensus 143 y~P~~~~dLv~~~~~~~~l~~wL~~~~~~~-----~g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~~~~~ 217 (544)
=.|.+|+-|+..+++.++|.+=|....... .|.+-++..|||||||||||+++.|+|++|+|.|+-++-+...
T Consensus 195 ~HpstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~-- 272 (457)
T KOG0743|consen 195 PHPSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVK-- 272 (457)
T ss_pred CCCCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeecccc--
Confidence 347899999999999999888887766542 2777779999999999999999999999999999877643311
Q ss_pred hhhhhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCc---h--------------hHHHH
Q 009072 218 QEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNG---R--------------TAFER 280 (544)
Q Consensus 218 ~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~---~--------------~~~~~ 280 (544)
...+++.++..+ ..+.||||+|||.... + -.+.+
T Consensus 273 ---------------~n~dLr~LL~~t--------------~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSG 323 (457)
T KOG0743|consen 273 ---------------LDSDLRHLLLAT--------------PNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSG 323 (457)
T ss_pred ---------------CcHHHHHHHHhC--------------CCCcEEEEeecccccccccccccccccccCCcceeehHH
Confidence 113355566433 3467999999997521 0 01223
Q ss_pred HHHHHHHHHhcCCCcEEEEEccCCCCCCCCccccchHHH-HHHHhhcC-ceeEEecCCCHHHHHHHHHHHHHH
Q 009072 281 LRQCLLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEEL-QSILVDAG-ARKVALNPITNGSIKRTLSKICRQ 351 (544)
Q Consensus 281 ~~~~L~~~~~~~~~piIiI~t~~~~~~~~d~~~~~l~~l-~~ll~r~~-~~~I~f~p~s~~~i~~~L~~i~~~ 351 (544)
+++++--+-.....-.|+|.|+++. +.| ++++++.| ..+|.+.--+....+....+.+..
T Consensus 324 LLNfiDGlwSscg~ERIivFTTNh~-----------EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~ 385 (457)
T KOG0743|consen 324 LLNFLDGLWSSCGDERIIVFTTNHK-----------EKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGI 385 (457)
T ss_pred hhhhhccccccCCCceEEEEecCCh-----------hhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCC
Confidence 3333332222221234555554332 333 34444322 456777777888777777766543
No 138
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.38 E-value=1.7e-11 Score=123.43 Aligned_cols=115 Identities=18% Similarity=0.223 Sum_probs=77.2
Q ss_pred CceEEEEecCCCCCchhHHHHHHHHHHHHHhcCCCcEEEEEccCCCCCCC--CccccchHHHHHHHhhcCceeEEecCCC
Q 009072 260 SSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPTAVVLTECGKADSV--DSTAQSFEELQSILVDAGARKVALNPIT 337 (544)
Q Consensus 260 ~~~vIlIDEid~l~~~~~~~~~~~~L~~~~~~~~~piIiI~t~~~~~~~~--d~~~~~l~~l~~ll~r~~~~~I~f~p~s 337 (544)
-|.|+||||++.++-. ....|.+.++..-.|+|+++|+....... +...+. --...+|.| +.+|.-.|++
T Consensus 278 vpGVLFIDEvHmLDiE-----cFsfLnralEs~~sPiiIlATNRg~~~irGt~~~sph-GiP~DlLDR--llII~t~py~ 349 (398)
T PF06068_consen 278 VPGVLFIDEVHMLDIE-----CFSFLNRALESELSPIIILATNRGITKIRGTDIISPH-GIPLDLLDR--LLIIRTKPYS 349 (398)
T ss_dssp EE-EEEEESGGGSBHH-----HHHHHHHHHTSTT--EEEEEES-SEEE-BTTS-EEET-T--HHHHTT--EEEEEE----
T ss_pred ecceEEecchhhccHH-----HHHHHHHHhcCCCCcEEEEecCceeeeccCccCcCCC-CCCcchHhh--cEEEECCCCC
Confidence 3679999999998643 22457888999999999999986543211 111111 112466776 8999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHH-cCCcHHHHHHHHHHh
Q 009072 338 NGSIKRTLSKICRQEQYSLSTEQIDLVAQA-SGGDIRQAITSLQFS 382 (544)
Q Consensus 338 ~~~i~~~L~~i~~~e~~~i~~~~l~~Ia~~-s~GDiR~aIn~Lq~~ 382 (544)
.++++++|.-.|+.|++.+++++++.|+.. ....+|.|++.|..+
T Consensus 350 ~~ei~~Il~iR~~~E~v~i~~~al~~L~~ig~~~SLRYAiqLi~~a 395 (398)
T PF06068_consen 350 EEEIKQILKIRAKEEDVEISEDALDLLTKIGVETSLRYAIQLITPA 395 (398)
T ss_dssp HHHHHHHHHHHHHHCT--B-HHHHHHHHHHHHHS-HHHHHHCHHHH
T ss_pred HHHHHHHHHhhhhhhcCcCCHHHHHHHHHHhhhccHHHHHHhhhhh
Confidence 999999999999999999999999999977 457899999987654
No 139
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=99.37 E-value=1.5e-11 Score=124.65 Aligned_cols=188 Identities=14% Similarity=0.140 Sum_probs=117.7
Q ss_pred cChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEE-------------EEeCCCchhhhh
Q 009072 153 VQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLY-------------EWDTPTPTIWQE 219 (544)
Q Consensus 153 ~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~vi-------------ei~~s~~~~~~e 219 (544)
.+....+++...+.. |+.+ +.+||+||+|+||+++|..+|+.+.+.-. .-+.||.....
T Consensus 8 W~~~~~~~l~~~~~~------~rl~-HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~- 79 (319)
T PRK08769 8 WQQRAYDQTVAALDA------GRLG-HGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVS- 79 (319)
T ss_pred cHHHHHHHHHHHHHc------CCcc-eeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEe-
Confidence 455666666666654 6666 78999999999999999999999865310 00011110000
Q ss_pred hhhccccCcc--cccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHHHHHhcCCCcEE
Q 009072 220 YMHNCKTGLE--YTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPTA 297 (544)
Q Consensus 220 ~l~~~~~g~~--~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~~~~~~~~piI 297 (544)
......|.. ..-..+.++++.+.+...+ ..+..+|+|||++|.|+..+ .++|++.+++.+..++
T Consensus 80 -~~p~~~~~k~~~~I~idqIR~l~~~~~~~p--------~~g~~kV~iI~~ae~m~~~A-----aNaLLKtLEEPp~~~~ 145 (319)
T PRK08769 80 -FIPNRTGDKLRTEIVIEQVREISQKLALTP--------QYGIAQVVIVDPADAINRAA-----CNALLKTLEEPSPGRY 145 (319)
T ss_pred -cCCCcccccccccccHHHHHHHHHHHhhCc--------ccCCcEEEEeccHhhhCHHH-----HHHHHHHhhCCCCCCe
Confidence 000000100 1112466666666554322 12346899999999987543 3778889998765544
Q ss_pred EEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHH
Q 009072 298 VVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIRQAIT 377 (544)
Q Consensus 298 iI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~l~~Ia~~s~GDiR~aIn 377 (544)
||..... .-..++.+.+| |..+.|.+|+.+++...|.. .+ ++......++..++|.+..|+.
T Consensus 146 fiL~~~~----------~~~lLpTIrSR--Cq~i~~~~~~~~~~~~~L~~----~~--~~~~~a~~~~~l~~G~p~~A~~ 207 (319)
T PRK08769 146 LWLISAQ----------PARLPATIRSR--CQRLEFKLPPAHEALAWLLA----QG--VSERAAQEALDAARGHPGLAAQ 207 (319)
T ss_pred EEEEECC----------hhhCchHHHhh--heEeeCCCcCHHHHHHHHHH----cC--CChHHHHHHHHHcCCCHHHHHH
Confidence 4433311 11123455554 99999999999999988874 23 5666677788999999998876
Q ss_pred HHH
Q 009072 378 SLQ 380 (544)
Q Consensus 378 ~Lq 380 (544)
.++
T Consensus 208 ~~~ 210 (319)
T PRK08769 208 WLR 210 (319)
T ss_pred Hhc
Confidence 653
No 140
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.34 E-value=1.6e-11 Score=137.69 Aligned_cols=207 Identities=15% Similarity=0.224 Sum_probs=136.1
Q ss_pred cccccCCCCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHh----------CCeEEE
Q 009072 139 WAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL----------GARLYE 208 (544)
Q Consensus 139 W~eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~el----------g~~vie 208 (544)
++++-+--.++.++|+++.++++...|.... ..++||+||||||||++|+.+|..+ +..++.
T Consensus 176 l~~~a~~g~~~~liGR~~ei~~~i~iL~r~~--------~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~ 247 (758)
T PRK11034 176 LNQLARVGGIDPLIGREKELERAIQVLCRRR--------KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYS 247 (758)
T ss_pred HHHHHHcCCCCcCcCCCHHHHHHHHHHhccC--------CCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEe
Confidence 4444456778889999999999999886621 2578999999999999999999875 223332
Q ss_pred EeCCCchhhhhhhhccccCcccc-cchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchh----HHHHHHH
Q 009072 209 WDTPTPTIWQEYMHNCKTGLEYT-SKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRT----AFERLRQ 283 (544)
Q Consensus 209 i~~s~~~~~~e~l~~~~~g~~~~-s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~----~~~~~~~ 283 (544)
.+. .....|..+. .....++.++..+... .+.||+|||++.+.+.+ .-..+.+
T Consensus 248 l~~----------~~llaG~~~~Ge~e~rl~~l~~~l~~~------------~~~ILfIDEIh~L~g~g~~~~g~~d~~n 305 (758)
T PRK11034 248 LDI----------GSLLAGTKYRGDFEKRFKALLKQLEQD------------TNSILFIDEIHTIIGAGAASGGQVDAAN 305 (758)
T ss_pred ccH----------HHHhcccchhhhHHHHHHHHHHHHHhc------------CCCEEEeccHHHHhccCCCCCcHHHHHH
Confidence 221 1112222221 2234456666655432 35699999999873211 1123446
Q ss_pred HHHHHHhcCCCcEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHH----hCCCCCHH
Q 009072 284 CLLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQ----EQYSLSTE 359 (544)
Q Consensus 284 ~L~~~~~~~~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~----e~~~i~~~ 359 (544)
.|..++..+. +.+|.+++. +.+...+...+++.+| +..|.+++|+.++...+|+.+... .++.++++
T Consensus 306 lLkp~L~~g~--i~vIgATt~-----~E~~~~~~~D~AL~rR--Fq~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~ 376 (758)
T PRK11034 306 LIKPLLSSGK--IRVIGSTTY-----QEFSNIFEKDRALARR--FQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAK 376 (758)
T ss_pred HHHHHHhCCC--eEEEecCCh-----HHHHHHhhccHHHHhh--CcEEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHH
Confidence 6777777653 455555432 1111222333555555 678999999999999999987653 36789999
Q ss_pred HHHHHHHHcCCcH------HHHHHHHHHhcc
Q 009072 360 QIDLVAQASGGDI------RQAITSLQFSSL 384 (544)
Q Consensus 360 ~l~~Ia~~s~GDi------R~aIn~Lq~~~~ 384 (544)
++..++..+..-| .+||..|.-+|.
T Consensus 377 al~~a~~ls~ryi~~r~lPdKaidlldea~a 407 (758)
T PRK11034 377 AVRAAVELAVKYINDRHLPDKAIDVIDEAGA 407 (758)
T ss_pred HHHHHHHHhhccccCccChHHHHHHHHHHHH
Confidence 9999998876543 489999988875
No 141
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.31 E-value=1e-10 Score=120.84 Aligned_cols=171 Identities=19% Similarity=0.268 Sum_probs=116.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhC-----CeEEEEeCCCchhhhhhhhccccCcccccchHHHHHHHHHHHhhcCCCCC
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLG-----ARLYEWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPS 253 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg-----~~viei~~s~~~~~~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~ 253 (544)
+.++||||+|+|||+|+++++.+.. ..++.+.+.+ ...+.+..... ...+.|+++.
T Consensus 114 nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~--f~~~~v~a~~~-----~~~~~Fk~~y------------ 174 (408)
T COG0593 114 NPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSED--FTNDFVKALRD-----NEMEKFKEKY------------ 174 (408)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHH--HHHHHHHHHHh-----hhHHHHHHhh------------
Confidence 7899999999999999999999862 2344433322 11111111000 0112222222
Q ss_pred CCCCCCCceEEEEecCCCCCchhH-HHHHHHHHHHHHhcCCCcEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEE
Q 009072 254 IPGESKSSAILLIDDLPVTNGRTA-FERLRQCLLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVA 332 (544)
Q Consensus 254 ~~~~~~~~~vIlIDEid~l~~~~~-~~~~~~~L~~~~~~~~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~ 332 (544)
.-.+++|||++.+.+.+. ...+...+..+.+.++ .|+++++..+...+. ..+.+++.+.. +..+.
T Consensus 175 ------~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~k--qIvltsdr~P~~l~~----~~~rL~SR~~~--Gl~~~ 240 (408)
T COG0593 175 ------SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGK--QIVLTSDRPPKELNG----LEDRLRSRLEW--GLVVE 240 (408)
T ss_pred ------ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCC--EEEEEcCCCchhhcc----ccHHHHHHHhc--eeEEe
Confidence 123899999999877532 2344566777777765 577777765433221 23456666665 68999
Q ss_pred ecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHh
Q 009072 333 LNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIRQAITSLQFS 382 (544)
Q Consensus 333 f~p~s~~~i~~~L~~i~~~e~~~i~~~~l~~Ia~~s~GDiR~aIn~Lq~~ 382 (544)
+.||+.+....+|++.+...++.++++++..|+.....|+|.....|..+
T Consensus 241 I~~Pd~e~r~aiL~kka~~~~~~i~~ev~~~la~~~~~nvReLegaL~~l 290 (408)
T COG0593 241 IEPPDDETRLAILRKKAEDRGIEIPDEVLEFLAKRLDRNVRELEGALNRL 290 (408)
T ss_pred eCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999865555433
No 142
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.31 E-value=4.3e-11 Score=135.16 Aligned_cols=197 Identities=13% Similarity=0.122 Sum_probs=122.3
Q ss_pred hccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCCchhhhhhhhccccCccc
Q 009072 151 LAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIWQEYMHNCKTGLEY 230 (544)
Q Consensus 151 Lv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~~~~~~e~l~~~~~g~~~ 230 (544)
..|.++.++++.+|+...... +......++|+||||+||||+++.+|+.++.+++.++....+...+.........
T Consensus 324 ~~g~~~vK~~i~~~l~~~~~~--~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~~~~~-- 399 (784)
T PRK10787 324 HYGLERVKDRILEYLAVQSRV--NKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYI-- 399 (784)
T ss_pred ccCHHHHHHHHHHHHHHHHhc--ccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccchhccC--
Confidence 678899999999999865432 2223368999999999999999999999999998887655432211111000000
Q ss_pred ccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHHHHHhcCC---------------Cc
Q 009072 231 TSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTH---------------IP 295 (544)
Q Consensus 231 ~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~~~~~~~---------------~p 295 (544)
.+....+...+..+. ....||+|||+|.+..... ....++|+++++..+ ..
T Consensus 400 g~~~G~~~~~l~~~~-------------~~~~villDEidk~~~~~~-g~~~~aLlevld~~~~~~~~d~~~~~~~dls~ 465 (784)
T PRK10787 400 GSMPGKLIQKMAKVG-------------VKNPLFLLDEIDKMSSDMR-GDPASALLEVLDPEQNVAFSDHYLEVDYDLSD 465 (784)
T ss_pred CCCCcHHHHHHHhcC-------------CCCCEEEEEChhhcccccC-CCHHHHHHHHhccccEEEEecccccccccCCc
Confidence 011111111121111 1234899999999865311 112355666665321 24
Q ss_pred EEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHH----------hCCCCCHHHHHHHH
Q 009072 296 TAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQ----------EQYSLSTEQIDLVA 365 (544)
Q Consensus 296 iIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~----------e~~~i~~~~l~~Ia 365 (544)
++||+|++. +...+++++| +.+|.|.+++.+++..+.++.+.. ..+.+++++++.|+
T Consensus 466 v~~i~TaN~-----------~~i~~aLl~R--~~ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii 532 (784)
T PRK10787 466 VMFVATSNS-----------MNIPAPLLDR--MEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGII 532 (784)
T ss_pred eEEEEcCCC-----------CCCCHHHhcc--eeeeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHH
Confidence 667775521 1123566665 789999999999999998877641 12468899999999
Q ss_pred HHcC-----CcHHHHHHH
Q 009072 366 QASG-----GDIRQAITS 378 (544)
Q Consensus 366 ~~s~-----GDiR~aIn~ 378 (544)
+.+. .++++.|..
T Consensus 533 ~~yt~e~GaR~LeR~I~~ 550 (784)
T PRK10787 533 RYYTREAGVRSLEREISK 550 (784)
T ss_pred HhCCcccCCcHHHHHHHH
Confidence 7532 245555544
No 143
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=3.9e-11 Score=127.48 Aligned_cols=193 Identities=18% Similarity=0.228 Sum_probs=137.8
Q ss_pred CCCCcchhccChHHHHHHHHHHHHhhcCCC-----CCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCCchhhh
Q 009072 144 KPRSLEELAVQRKKVEEVRAWFEERLGDSK-----DKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIWQ 218 (544)
Q Consensus 144 ~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~-----g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~~~~~~ 218 (544)
.|.+ .++.|-......++..+...+..+. |..+++.+|+|||||||||.+++++|++.+..++.+++|..-.
T Consensus 180 ~~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~-- 256 (693)
T KOG0730|consen 180 PEVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELIS-- 256 (693)
T ss_pred cccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHH--
Confidence 5555 6788888888888888776654432 5566699999999999999999999999999999999875321
Q ss_pred hhhhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCch-----hHHHHHHHHHHHHHhcCC
Q 009072 219 EYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGR-----TAFERLRQCLLLLVRSTH 293 (544)
Q Consensus 219 e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~-----~~~~~~~~~L~~~~~~~~ 293 (544)
....++...++..++++.++. .|.+|+|||+|.+.++ ..-.++...|+.+++.-+
T Consensus 257 ---------k~~gEte~~LR~~f~~a~k~~-----------~psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~ 316 (693)
T KOG0730|consen 257 ---------KFPGETESNLRKAFAEALKFQ-----------VPSIIFIDELDALCPKREGADDVESRVVSQLLTLLDGLK 316 (693)
T ss_pred ---------hcccchHHHHHHHHHHHhccC-----------CCeeEeHHhHhhhCCcccccchHHHHHHHHHHHHHhhCc
Confidence 112334467888888887652 2889999999998542 113455555666665443
Q ss_pred --CcEEEEEccCCCCCCCCccccchHHHHHHHh--hcCceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcC
Q 009072 294 --IPTAVVLTECGKADSVDSTAQSFEELQSILV--DAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASG 369 (544)
Q Consensus 294 --~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~--r~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~l~~Ia~~s~ 369 (544)
..+|+|.++. ..+. +.+.++ |+ ...+.+.-|+.+....+|+.++...+.. ++..+..++..++
T Consensus 317 ~~~~vivl~atn-rp~s----------ld~alRRgRf-d~ev~IgiP~~~~RldIl~~l~k~~~~~-~~~~l~~iA~~th 383 (693)
T KOG0730|consen 317 PDAKVIVLAATN-RPDS----------LDPALRRGRF-DREVEIGIPGSDGRLDILRVLTKKMNLL-SDVDLEDIAVSTH 383 (693)
T ss_pred CcCcEEEEEecC-Cccc----------cChhhhcCCC-cceeeecCCCchhHHHHHHHHHHhcCCc-chhhHHHHHHHcc
Confidence 3455555442 2222 223333 33 5678889999999999999998887766 6788999999988
Q ss_pred CcH
Q 009072 370 GDI 372 (544)
Q Consensus 370 GDi 372 (544)
|-.
T Consensus 384 Gyv 386 (693)
T KOG0730|consen 384 GYV 386 (693)
T ss_pred chh
Confidence 754
No 144
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.30 E-value=2.1e-10 Score=114.58 Aligned_cols=179 Identities=21% Similarity=0.268 Sum_probs=100.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCC-eEE--EEeCCCc--hhhhhhhhccccCcccc--cc---hHHHHHHHHHHHhhc
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLGA-RLY--EWDTPTP--TIWQEYMHNCKTGLEYT--SK---LDEFENFVERIRRYG 248 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg~-~vi--ei~~s~~--~~~~e~l~~~~~g~~~~--s~---~~~~~~~l~~~~~~~ 248 (544)
+.++|+||+|+||||+++.+++++.. .++ .+..+.. ......+.. ..|.... .. ...+..++.....
T Consensus 44 ~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~-~lG~~~~~~~~~~~~~~l~~~l~~~~~-- 120 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAA-DFGLETEGRDKAALLRELEDFLIEQFA-- 120 (269)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHH-HcCCCCCCCCHHHHHHHHHHHHHHHHh--
Confidence 58999999999999999999999762 222 2222211 111111111 1122111 11 1223333322211
Q ss_pred CCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHHHHHhcCCCcEEEEEccCCCCCCCCccccch--HHHHHHHhhc
Q 009072 249 STSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPTAVVLTECGKADSVDSTAQSF--EELQSILVDA 326 (544)
Q Consensus 249 ~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~~~~~~~~piIiI~t~~~~~~~~d~~~~~l--~~l~~ll~r~ 326 (544)
.+++.+|+|||++.+... ....+. .|..........+.++.+.... ....+ .....+.+|.
T Consensus 121 ---------~~~~~vliiDe~~~l~~~-~~~~l~-~l~~~~~~~~~~~~vvl~g~~~------~~~~l~~~~~~~l~~r~ 183 (269)
T TIGR03015 121 ---------AGKRALLVVDEAQNLTPE-LLEELR-MLSNFQTDNAKLLQIFLVGQPE------FRETLQSPQLQQLRQRI 183 (269)
T ss_pred ---------CCCCeEEEEECcccCCHH-HHHHHH-HHhCcccCCCCeEEEEEcCCHH------HHHHHcCchhHHHHhhe
Confidence 145679999999998643 222221 2222211122223333332110 00011 1123344443
Q ss_pred CceeEEecCCCHHHHHHHHHHHHHHhC----CCCCHHHHHHHHHHcCCcHHHHHHHH
Q 009072 327 GARKVALNPITNGSIKRTLSKICRQEQ----YSLSTEQIDLVAQASGGDIRQAITSL 379 (544)
Q Consensus 327 ~~~~I~f~p~s~~~i~~~L~~i~~~e~----~~i~~~~l~~Ia~~s~GDiR~aIn~L 379 (544)
...+++.|++.+++..++...+...+ ..+++++++.|++.++|+.|. ||.+
T Consensus 184 -~~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~-i~~l 238 (269)
T TIGR03015 184 -IASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRL-INIL 238 (269)
T ss_pred -eeeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccH-HHHH
Confidence 56889999999999999999988655 368999999999999999998 4444
No 145
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=2.1e-11 Score=119.25 Aligned_cols=173 Identities=19% Similarity=0.251 Sum_probs=105.8
Q ss_pred cchhccChHHHHHHHHHHHHhhcCCC-C-----CCCccEEEEEcCCCCcHHHHHHHHHHHhCC---------eEEEEeCC
Q 009072 148 LEELAVQRKKVEEVRAWFEERLGDSK-D-----KFSTNVLVITGQAGVGKTATVRQIASHLGA---------RLYEWDTP 212 (544)
Q Consensus 148 ~~dLv~~~~~~~~l~~wL~~~~~~~~-g-----~~~~~~lLL~GPpG~GKTtla~~lA~elg~---------~viei~~s 212 (544)
++.|+.....+++|..+......-.. + -.-.+.+||+||||||||++.+++|+.+.+ .++|+|+.
T Consensus 141 WEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinsh 220 (423)
T KOG0744|consen 141 WESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSH 220 (423)
T ss_pred HHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehh
Confidence 35577777788888887655432111 0 012378999999999999999999999843 46777754
Q ss_pred CchhhhhhhhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCc-----------hhHHHHH
Q 009072 213 TPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNG-----------RTAFERL 281 (544)
Q Consensus 213 ~~~~~~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~-----------~~~~~~~ 281 (544)
. ....++.++.+.+..+++++..... ..+.-.+++|||+..+.. .++. |+
T Consensus 221 s-----------LFSKWFsESgKlV~kmF~kI~ELv~-------d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaI-Rv 281 (423)
T KOG0744|consen 221 S-----------LFSKWFSESGKLVAKMFQKIQELVE-------DRGNLVFVLIDEVESLAAARTSASSRNEPSDAI-RV 281 (423)
T ss_pred H-----------HHHHHHhhhhhHHHHHHHHHHHHHh-------CCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHH-HH
Confidence 3 1222333444555555655554431 123457889999997622 1233 44
Q ss_pred HHH-HHHHHhcCCCcEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHH
Q 009072 282 RQC-LLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKIC 349 (544)
Q Consensus 282 ~~~-L~~~~~~~~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~ 349 (544)
.++ |.++.+-.+.|.|+|.++.+..+..| .++..|. .-+....||+...+..+++.-.
T Consensus 282 VNalLTQlDrlK~~~NvliL~TSNl~~siD---------~AfVDRA-Di~~yVG~Pt~~ai~~Ilksci 340 (423)
T KOG0744|consen 282 VNALLTQLDRLKRYPNVLILATSNLTDSID---------VAFVDRA-DIVFYVGPPTAEAIYEILKSCI 340 (423)
T ss_pred HHHHHHHHHHhccCCCEEEEeccchHHHHH---------HHhhhHh-hheeecCCccHHHHHHHHHHHH
Confidence 444 44555556678888877754322211 3444552 3355567888888888877544
No 146
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=1.7e-11 Score=119.27 Aligned_cols=105 Identities=18% Similarity=0.271 Sum_probs=81.4
Q ss_pred CcchhccChHHHHHHHHHHHHhhcCCC-----CCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCCchhhhhhh
Q 009072 147 SLEELAVQRKKVEEVRAWFEERLGDSK-----DKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIWQEYM 221 (544)
Q Consensus 147 ~~~dLv~~~~~~~~l~~wL~~~~~~~~-----g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~~~~~~e~l 221 (544)
+|+.+.|....++++++-+.-.+..+. |-.+++.++||||||+|||.+++++|..+|++++.+.++..
T Consensus 130 s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~l------- 202 (388)
T KOG0651|consen 130 SFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSAL------- 202 (388)
T ss_pred CHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhh-------
Confidence 889999999999999998876655432 55566999999999999999999999999999998877642
Q ss_pred hccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCc
Q 009072 222 HNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNG 274 (544)
Q Consensus 222 ~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~ 274 (544)
......++...+++.+..++.. .||||++||+|.+.+
T Consensus 203 ----v~kyiGEsaRlIRemf~yA~~~------------~pciifmdeiDAigG 239 (388)
T KOG0651|consen 203 ----VDKYIGESARLIRDMFRYAREV------------IPCIIFMDEIDAIGG 239 (388)
T ss_pred ----hhhhcccHHHHHHHHHHHHhhh------------CceEEeehhhhhhcc
Confidence 1112233446677777666544 379999999998754
No 147
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.28 E-value=1.3e-10 Score=130.26 Aligned_cols=205 Identities=17% Similarity=0.238 Sum_probs=123.3
Q ss_pred hccChHHHHHHHHHHHHhhcCCC-CCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCCchh---hhhhhhcccc
Q 009072 151 LAVQRKKVEEVRAWFEERLGDSK-DKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTI---WQEYMHNCKT 226 (544)
Q Consensus 151 Lv~~~~~~~~l~~wL~~~~~~~~-g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~~~~---~~e~l~~~~~ 226 (544)
++|+++.++.|..++..+..... ...|...+||+||||||||++|+++|+.++.+++.++.+.... ....++....
T Consensus 460 ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG~~~g 539 (758)
T PRK11034 460 VFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPG 539 (758)
T ss_pred EeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcCCCCC
Confidence 68999999999999987644211 1122357999999999999999999999999999988765321 1111111001
Q ss_pred CcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHHHHHhcCC-----------Cc
Q 009072 227 GLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTH-----------IP 295 (544)
Q Consensus 227 g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~~~~~~~-----------~p 295 (544)
..++. ....+.+.+ .. .+..||+|||++.+.. .+++.|+++++.+. ..
T Consensus 540 yvg~~-~~g~L~~~v---~~------------~p~sVlllDEieka~~-----~v~~~LLq~ld~G~ltd~~g~~vd~rn 598 (758)
T PRK11034 540 YVGFD-QGGLLTDAV---IK------------HPHAVLLLDEIEKAHP-----DVFNLLLQVMDNGTLTDNNGRKADFRN 598 (758)
T ss_pred ccccc-ccchHHHHH---Hh------------CCCcEEEeccHhhhhH-----HHHHHHHHHHhcCeeecCCCceecCCC
Confidence 11110 011121111 11 2357999999999753 45677777776542 13
Q ss_pred EEEEEccC-CCCCC---------CCccccchHHH-----HHHHhhcCceeEEecCCCHHHHHHHHHHHHHH-------hC
Q 009072 296 TAVVLTEC-GKADS---------VDSTAQSFEEL-----QSILVDAGARKVALNPITNGSIKRTLSKICRQ-------EQ 353 (544)
Q Consensus 296 iIiI~t~~-~~~~~---------~d~~~~~l~~l-----~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~-------e~ 353 (544)
.|+|+|++ +.... .+........+ ++++.|. ..+|.|+|++.+++.+++...+.. .+
T Consensus 599 ~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~Ri-d~ii~f~~L~~~~l~~I~~~~l~~~~~~l~~~~ 677 (758)
T PRK11034 599 VVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRL-DNIIWFDHLSTDVIHQVVDKFIVELQAQLDQKG 677 (758)
T ss_pred cEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHccC-CEEEEcCCCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 44454443 21000 00000000111 4566664 468999999999999998876542 23
Q ss_pred --CCCCHHHHHHHHHHcC------CcHHHHHH
Q 009072 354 --YSLSTEQIDLVAQASG------GDIRQAIT 377 (544)
Q Consensus 354 --~~i~~~~l~~Ia~~s~------GDiR~aIn 377 (544)
+.+++++++.|++..- ..+|++|.
T Consensus 678 i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~ 709 (758)
T PRK11034 678 VSLEVSQEARDWLAEKGYDRAMGARPMARVIQ 709 (758)
T ss_pred CCceECHHHHHHHHHhCCCCCCCCchHHHHHH
Confidence 4578999999997631 24565554
No 148
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=99.27 E-value=1.8e-10 Score=116.74 Aligned_cols=187 Identities=10% Similarity=0.109 Sum_probs=115.8
Q ss_pred cChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCCch--hhhh---hhhc----
Q 009072 153 VQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPT--IWQE---YMHN---- 223 (544)
Q Consensus 153 ~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~~~--~~~e---~l~~---- 223 (544)
.+....+++...+.. |+.+ +.+||+||.|+||+++|+.+|+.+-+.-.. ..+... .... ..+.
T Consensus 7 Wl~~~~~~l~~~~~~------~rl~-hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~-~~~Cg~C~sC~~~~~g~HPD~~~ 78 (319)
T PRK06090 7 WLVPVWQNWKAGLDA------GRIP-GALLLQSDEGLGVESLVELFSRALLCQNYQ-SEACGFCHSCELMQSGNHPDLHV 78 (319)
T ss_pred cHHHHHHHHHHHHHc------CCcc-eeEeeECCCCCCHHHHHHHHHHHHcCCCCC-CCCCCCCHHHHHHHcCCCCCEEE
Confidence 345555666665544 6666 899999999999999999999998653211 011100 0000 0000
Q ss_pred cc-cCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHHHHHhcCCCcEEEEEcc
Q 009072 224 CK-TGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPTAVVLTE 302 (544)
Q Consensus 224 ~~-~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~~~~~~~~piIiI~t~ 302 (544)
+. .+.+..-..+.++++.+.+...+ ..+..+|+|||++|.|+.. ..++|++.+++.+..++||..+
T Consensus 79 i~p~~~~~~I~vdqiR~l~~~~~~~~--------~~~~~kV~iI~~ae~m~~~-----AaNaLLKtLEEPp~~t~fiL~t 145 (319)
T PRK06090 79 IKPEKEGKSITVEQIRQCNRLAQESS--------QLNGYRLFVIEPADAMNES-----ASNALLKTLEEPAPNCLFLLVT 145 (319)
T ss_pred EecCcCCCcCCHHHHHHHHHHHhhCc--------ccCCceEEEecchhhhCHH-----HHHHHHHHhcCCCCCeEEEEEE
Confidence 00 00001123456666554443221 1234689999999998754 3478999999987666666554
Q ss_pred CCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHH
Q 009072 303 CGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIRQAITSLQ 380 (544)
Q Consensus 303 ~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~l~~Ia~~s~GDiR~aIn~Lq 380 (544)
... -..++.+.+| |..+.|.+|+.+++...|.. +++. ....++..++|.+..|+..++
T Consensus 146 ~~~----------~~lLpTI~SR--Cq~~~~~~~~~~~~~~~L~~----~~~~----~~~~~l~l~~G~p~~A~~~~~ 203 (319)
T PRK06090 146 HNQ----------KRLLPTIVSR--CQQWVVTPPSTAQAMQWLKG----QGIT----VPAYALKLNMGSPLKTLAMMK 203 (319)
T ss_pred CCh----------hhChHHHHhc--ceeEeCCCCCHHHHHHHHHH----cCCc----hHHHHHHHcCCCHHHHHHHhC
Confidence 221 1223455554 99999999999999988864 3433 234667889999999987653
No 149
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.27 E-value=3e-10 Score=112.64 Aligned_cols=114 Identities=16% Similarity=0.209 Sum_probs=87.0
Q ss_pred CceEEEEecCCCCCchhHHHHHHHHHHHHHhcCCCcEEEEEccCCCCCCC--CccccchHHHHHHHhhcCceeEEecCCC
Q 009072 260 SSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPTAVVLTECGKADSV--DSTAQSFEELQSILVDAGARKVALNPIT 337 (544)
Q Consensus 260 ~~~vIlIDEid~l~~~~~~~~~~~~L~~~~~~~~~piIiI~t~~~~~~~~--d~~~~~l~~l~~ll~r~~~~~I~f~p~s 337 (544)
-|.||||||++.++-. - ...|.+.+++.-.|+|+++||..-.... |...+. --...+|.| ..+|.-.|++
T Consensus 291 VpGVLFIDEvHmLDIE----~-FsFlnrAlEse~aPIii~AtNRG~~kiRGTd~~sPh-GIP~DlLDR--llII~t~py~ 362 (450)
T COG1224 291 VPGVLFIDEVHMLDIE----C-FSFLNRALESELAPIIILATNRGMTKIRGTDIESPH-GIPLDLLDR--LLIISTRPYS 362 (450)
T ss_pred ecceEEEechhhhhHH----H-HHHHHHHhhcccCcEEEEEcCCceeeecccCCcCCC-CCCHhhhhh--eeEEecCCCC
Confidence 3679999999987532 2 2457788888889999999987643221 111111 112456665 7899999999
Q ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHc-CCcHHHHHHHHHH
Q 009072 338 NGSIKRTLSKICRQEQYSLSTEQIDLVAQAS-GGDIRQAITSLQF 381 (544)
Q Consensus 338 ~~~i~~~L~~i~~~e~~~i~~~~l~~Ia~~s-~GDiR~aIn~Lq~ 381 (544)
.++++.+|+..+..+++.+++++++.|+... .-.+|.|++.|.-
T Consensus 363 ~~EireIi~iRa~ee~i~l~~~Ale~L~~ig~etSLRYa~qLL~p 407 (450)
T COG1224 363 REEIREIIRIRAKEEDIELSDDALEYLTDIGEETSLRYAVQLLTP 407 (450)
T ss_pred HHHHHHHHHHhhhhhccccCHHHHHHHHhhchhhhHHHHHHhccH
Confidence 9999999999999999999999999999873 4679999998863
No 150
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.25 E-value=1.7e-10 Score=131.73 Aligned_cols=211 Identities=13% Similarity=0.138 Sum_probs=129.1
Q ss_pred hhccChHHHHHHHHHHHHhhcCCC-CCCCccEEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeCCCchhhh---hhhh
Q 009072 150 ELAVQRKKVEEVRAWFEERLGDSK-DKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTPTPTIWQ---EYMH 222 (544)
Q Consensus 150 dLv~~~~~~~~l~~wL~~~~~~~~-g~~~~~~lLL~GPpG~GKTtla~~lA~el---g~~viei~~s~~~~~~---e~l~ 222 (544)
.++|++..++.|..++........ ...|...+||+||||+|||.+|+++|+.+ .-.++.++.++..... ..++
T Consensus 567 ~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~~~l~g 646 (852)
T TIGR03345 567 RVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTVSRLKG 646 (852)
T ss_pred eEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhhccccC
Confidence 478999999999999987643211 11222469999999999999999999998 3456777754422110 0111
Q ss_pred ccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHHHHHhcCC---------
Q 009072 223 NCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTH--------- 293 (544)
Q Consensus 223 ~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~~~~~~~--------- 293 (544)
.....+++.. ...+...+ ++ .+..||+|||++.++. .+++.|.++++.+.
T Consensus 647 ~~~gyvg~~~-~g~L~~~v---~~------------~p~svvllDEieka~~-----~v~~~Llq~ld~g~l~d~~Gr~v 705 (852)
T TIGR03345 647 SPPGYVGYGE-GGVLTEAV---RR------------KPYSVVLLDEVEKAHP-----DVLELFYQVFDKGVMEDGEGREI 705 (852)
T ss_pred CCCCcccccc-cchHHHHH---Hh------------CCCcEEEEechhhcCH-----HHHHHHHHHhhcceeecCCCcEE
Confidence 1111112211 11122222 21 2357999999997653 34566777776653
Q ss_pred ---CcEEEEEccCCCCCC----CCccc-cchH-------------HHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHH-
Q 009072 294 ---IPTAVVLTECGKADS----VDSTA-QSFE-------------ELQSILVDAGARKVALNPITNGSIKRTLSKICRQ- 351 (544)
Q Consensus 294 ---~piIiI~t~~~~~~~----~d~~~-~~l~-------------~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~- 351 (544)
..+|+++++...... .+... .... ..+++++| +.+|.|+|++.+++.+++...+..
T Consensus 706 d~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEflnR--i~iI~F~pLs~e~l~~Iv~~~L~~l 783 (852)
T TIGR03345 706 DFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLGR--MTVIPYLPLDDDVLAAIVRLKLDRI 783 (852)
T ss_pred eccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhcc--eeEEEeCCCCHHHHHHHHHHHHHHH
Confidence 234444444332110 00000 0000 01345565 679999999999999999876643
Q ss_pred ------h-C--CCCCHHHHHHHHHHcCC---cHHHHHHHHHHhc
Q 009072 352 ------E-Q--YSLSTEQIDLVAQASGG---DIRQAITSLQFSS 383 (544)
Q Consensus 352 ------e-~--~~i~~~~l~~Ia~~s~G---DiR~aIn~Lq~~~ 383 (544)
. + +.+++++++.|++.+.+ +.|...+.+|-..
T Consensus 784 ~~rl~~~~gi~l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~~i 827 (852)
T TIGR03345 784 ARRLKENHGAELVYSEALVEHIVARCTEVESGARNIDAILNQTL 827 (852)
T ss_pred HHHHHHhcCceEEECHHHHHHHHHHcCCCCCChHHHHHHHHHHH
Confidence 1 4 36899999999999877 7888888887754
No 151
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=99.25 E-value=5.8e-11 Score=109.34 Aligned_cols=153 Identities=16% Similarity=0.210 Sum_probs=84.9
Q ss_pred cChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCCch-hhhhhh---hc----c
Q 009072 153 VQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPT-IWQEYM---HN----C 224 (544)
Q Consensus 153 ~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~~~-~~~e~l---~~----~ 224 (544)
|+++.++.|...+.. ++.+ +.+||+||+|+||+++|+.+|+.+-..-..-...... ...... +. .
T Consensus 1 gq~~~~~~L~~~~~~------~~l~-ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~ 73 (162)
T PF13177_consen 1 GQEEIIELLKNLIKS------GRLP-HALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIII 73 (162)
T ss_dssp S-HHHHHHHHHHHHC------TC---SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEE
T ss_pred CcHHHHHHHHHHHHc------CCcc-eeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEE
Confidence 577778888777765 6665 8899999999999999999999975432110000000 000000 00 0
Q ss_pred -ccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHHHHHhcCCCcEEEEEccC
Q 009072 225 -KTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPTAVVLTEC 303 (544)
Q Consensus 225 -~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~~~~~~~~piIiI~t~~ 303 (544)
..+....-..+.++++.+.+... + .....+|++|||+|.|+.. .+++|++.+++.+..++||..+.
T Consensus 74 ~~~~~~~~i~i~~ir~i~~~~~~~----~----~~~~~KviiI~~ad~l~~~-----a~NaLLK~LEepp~~~~fiL~t~ 140 (162)
T PF13177_consen 74 KPDKKKKSIKIDQIREIIEFLSLS----P----SEGKYKVIIIDEADKLTEE-----AQNALLKTLEEPPENTYFILITN 140 (162)
T ss_dssp ETTTSSSSBSHHHHHHHHHHCTSS---------TTSSSEEEEEETGGGS-HH-----HHHHHHHHHHSTTTTEEEEEEES
T ss_pred ecccccchhhHHHHHHHHHHHHHH----H----hcCCceEEEeehHhhhhHH-----HHHHHHHHhcCCCCCEEEEEEEC
Confidence 00110012336666666543211 1 1245789999999998653 45789999999876666555442
Q ss_pred CCCCCCCccccchHHHHHHHhhcCceeEEecCCC
Q 009072 304 GKADSVDSTAQSFEELQSILVDAGARKVALNPIT 337 (544)
Q Consensus 304 ~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s 337 (544)
+ .-..++++.+| |..+.|.|++
T Consensus 141 ~----------~~~il~TI~SR--c~~i~~~~ls 162 (162)
T PF13177_consen 141 N----------PSKILPTIRSR--CQVIRFRPLS 162 (162)
T ss_dssp -----------GGGS-HHHHTT--SEEEEE----
T ss_pred C----------hHHChHHHHhh--ceEEecCCCC
Confidence 2 11224555564 9999999874
No 152
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.25 E-value=2.5e-10 Score=129.35 Aligned_cols=196 Identities=15% Similarity=0.258 Sum_probs=119.7
Q ss_pred hhccChHHHHHHHHHHHHhhcCC--CCCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCCchhh---hhhhhcc
Q 009072 150 ELAVQRKKVEEVRAWFEERLGDS--KDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIW---QEYMHNC 224 (544)
Q Consensus 150 dLv~~~~~~~~l~~wL~~~~~~~--~g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~~~~~---~e~l~~~ 224 (544)
.++|++..++.|...+......- .++ |...+||+||||||||++|+++|+.++.+++.++.++.... ...+...
T Consensus 455 ~v~GQ~~ai~~l~~~i~~~~~g~~~~~~-p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~lig~~ 533 (731)
T TIGR02639 455 KIFGQDEAIDSLVSSIKRSRAGLGNPNK-PVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRLIGAP 533 (731)
T ss_pred ceeCcHHHHHHHHHHHHHHhcCCCCCCC-CceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHhcCC
Confidence 46899999999999887643211 122 22569999999999999999999999999999987653211 1111111
Q ss_pred ccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHHHHHhcCC-----------
Q 009072 225 KTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTH----------- 293 (544)
Q Consensus 225 ~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~~~~~~~----------- 293 (544)
...+++. ....+ .+.++. .+..||+|||++.+.. .+++.|+++++.+.
T Consensus 534 ~gyvg~~-~~~~l---~~~~~~------------~p~~VvllDEieka~~-----~~~~~Ll~~ld~g~~~d~~g~~vd~ 592 (731)
T TIGR02639 534 PGYVGFE-QGGLL---TEAVRK------------HPHCVLLLDEIEKAHP-----DIYNILLQVMDYATLTDNNGRKADF 592 (731)
T ss_pred CCCcccc-hhhHH---HHHHHh------------CCCeEEEEechhhcCH-----HHHHHHHHhhccCeeecCCCcccCC
Confidence 1111111 11112 222221 2357999999998754 35566777776542
Q ss_pred CcEEEEEcc-CCCCCCCC----ccccc-----hHH-----HHHHHhhcCceeEEecCCCHHHHHHHHHHHHHHh------
Q 009072 294 IPTAVVLTE-CGKADSVD----STAQS-----FEE-----LQSILVDAGARKVALNPITNGSIKRTLSKICRQE------ 352 (544)
Q Consensus 294 ~piIiI~t~-~~~~~~~d----~~~~~-----l~~-----l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e------ 352 (544)
...++|+|. ........ ..... ... .++++.|. ..+|.|+|++.+++.+++...+...
T Consensus 593 ~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Ri-d~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l~~ 671 (731)
T TIGR02639 593 RNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRNRL-DAIIHFNPLSEEVLEKIVQKFVDELSKQLNE 671 (731)
T ss_pred CCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHhcC-CeEEEcCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 124455443 22111000 00000 000 13455664 5689999999999999999887531
Q ss_pred ---CCCCCHHHHHHHHHHc
Q 009072 353 ---QYSLSTEQIDLVAQAS 368 (544)
Q Consensus 353 ---~~~i~~~~l~~Ia~~s 368 (544)
.+.+++++++.|++.+
T Consensus 672 ~~~~l~i~~~a~~~La~~~ 690 (731)
T TIGR02639 672 KNIKLELTDDAKKYLAEKG 690 (731)
T ss_pred CCCeEEeCHHHHHHHHHhC
Confidence 2568999999999874
No 153
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.24 E-value=2.6e-10 Score=119.80 Aligned_cols=211 Identities=14% Similarity=0.200 Sum_probs=121.6
Q ss_pred hccChHHHHHHHHHHHHhhcCC--------CCCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCCchhhhhhhh
Q 009072 151 LAVQRKKVEEVRAWFEERLGDS--------KDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIWQEYMH 222 (544)
Q Consensus 151 Lv~~~~~~~~l~~wL~~~~~~~--------~g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~~~~~~e~l~ 222 (544)
++|++..++.|...+..+.... ....+..++||+||||||||++|+++|+.++.+++.++++...
T Consensus 73 ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~------- 145 (412)
T PRK05342 73 VIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLT------- 145 (412)
T ss_pred eeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcc-------
Confidence 7899999998877765432211 0112346899999999999999999999999999988765421
Q ss_pred ccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchh-------H--HHHHHHHHHHHHhcCC
Q 009072 223 NCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRT-------A--FERLRQCLLLLVRSTH 293 (544)
Q Consensus 223 ~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~-------~--~~~~~~~L~~~~~~~~ 293 (544)
..+|.. .....++..+...+.. .-....+.||+|||+|.+.... + -.+++++|+++++.+.
T Consensus 146 ----~~gyvG--~d~e~~l~~l~~~~~~----~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~ 215 (412)
T PRK05342 146 ----EAGYVG--EDVENILLKLLQAADY----DVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTV 215 (412)
T ss_pred ----cCCccc--chHHHHHHHHHHhccc----cHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCe
Confidence 111111 1112222221110000 0001236799999999985421 0 1246778888886321
Q ss_pred ----------C-----------cEEEEEccCCCCC----------------CCCcc-------ccchH-----------H
Q 009072 294 ----------I-----------PTAVVLTECGKAD----------------SVDST-------AQSFE-----------E 318 (544)
Q Consensus 294 ----------~-----------piIiI~t~~~~~~----------------~~d~~-------~~~l~-----------~ 318 (544)
. .++|||+...... ..... ...+. .
T Consensus 216 ~~v~~~gg~~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf 295 (412)
T PRK05342 216 ASVPPQGGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGL 295 (412)
T ss_pred EEeCCCCCcCcCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhh
Confidence 1 2333333221110 00000 00000 1
Q ss_pred HHHHHhhcCceeEEecCCCHHHHHHHHHH----HHH-------HhC--CCCCHHHHHHHHHHcC------CcHHHHHHHH
Q 009072 319 LQSILVDAGARKVALNPITNGSIKRTLSK----ICR-------QEQ--YSLSTEQIDLVAQASG------GDIRQAITSL 379 (544)
Q Consensus 319 l~~ll~r~~~~~I~f~p~s~~~i~~~L~~----i~~-------~e~--~~i~~~~l~~Ia~~s~------GDiR~aIn~L 379 (544)
.++++.|. ..++.|+|++.+++.+++.. ++. ..+ +.+++++++.|++.+. ..+|+.|...
T Consensus 296 ~PEflgRl-d~iv~f~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~Lrriie~~ 374 (412)
T PRK05342 296 IPEFIGRL-PVVATLEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTGARGLRSILEEI 374 (412)
T ss_pred hHHHhCCC-CeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCchHHHHHHHH
Confidence 34566664 56889999999999999972 332 233 3589999999999742 3566666544
No 154
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=1e-10 Score=117.46 Aligned_cols=171 Identities=14% Similarity=0.130 Sum_probs=107.7
Q ss_pred cchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCCchhhhhhhhccccC
Q 009072 148 LEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIWQEYMHNCKTG 227 (544)
Q Consensus 148 ~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~~~~~~e~l~~~~~g 227 (544)
+.+++.++....+|...............|-+++|||||||+|||..|+-||++.|.++--+...|.- .-|
T Consensus 354 l~~ViL~psLe~Rie~lA~aTaNTK~h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVA---------PlG 424 (630)
T KOG0742|consen 354 LEGVILHPSLEKRIEDLAIATANTKKHQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVA---------PLG 424 (630)
T ss_pred cCCeecCHHHHHHHHHHHHHhcccccccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCcc---------ccc
Confidence 88999999998888886654433223444558999999999999999999999999988766655521 111
Q ss_pred cccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCc-------hhHHHHHHHHHHHHHhcCCCcEEEEE
Q 009072 228 LEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNG-------RTAFERLRQCLLLLVRSTHIPTAVVL 300 (544)
Q Consensus 228 ~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~-------~~~~~~~~~~L~~~~~~~~~piIiI~ 300 (544)
.. ....+.++++=+++. .+..++||||+|...- ..+.+..+++|+--...-...+|+++
T Consensus 425 ~q---aVTkiH~lFDWakkS-----------~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTGdqSrdivLvl 490 (630)
T KOG0742|consen 425 AQ---AVTKIHKLFDWAKKS-----------RRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSRDIVLVL 490 (630)
T ss_pred hH---HHHHHHHHHHHHhhc-----------ccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhcccccceEEEe
Confidence 11 123455555544432 4567999999996411 11223333333322222233466665
Q ss_pred ccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHHh
Q 009072 301 TECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQE 352 (544)
Q Consensus 301 t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e 352 (544)
.++.+.+. ..++-.|. ..+|+|+.|..++..++|...+.+.
T Consensus 491 AtNrpgdl----------DsAV~DRi-de~veFpLPGeEERfkll~lYlnky 531 (630)
T KOG0742|consen 491 ATNRPGDL----------DSAVNDRI-DEVVEFPLPGEEERFKLLNLYLNKY 531 (630)
T ss_pred ccCCccch----------hHHHHhhh-hheeecCCCChHHHHHHHHHHHHHH
Confidence 54332211 12223332 6789999999999999998877653
No 155
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=99.18 E-value=5.6e-10 Score=114.21 Aligned_cols=172 Identities=16% Similarity=0.186 Sum_probs=106.7
Q ss_pred CCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEE-----------------EeCCCchhhh-hhhhc------------
Q 009072 174 DKFSTNVLVITGQAGVGKTATVRQIASHLGARLYE-----------------WDTPTPTIWQ-EYMHN------------ 223 (544)
Q Consensus 174 g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~vie-----------------i~~s~~~~~~-e~l~~------------ 223 (544)
++.+ +.+||+||+|+||+++|+.+|+.+.+.--. -+.||..... +....
T Consensus 18 ~rl~-ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~ 96 (342)
T PRK06964 18 ARLP-HALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEA 96 (342)
T ss_pred CCcc-eEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccc
Confidence 5555 899999999999999999999998664210 0111111000 00000
Q ss_pred --cccCcc-----cccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHHHHHhcCCCcE
Q 009072 224 --CKTGLE-----YTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPT 296 (544)
Q Consensus 224 --~~~g~~-----~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~~~~~~~~pi 296 (544)
...|.. ..-..++++++...+...+ ..+..+|+|||++|.|+... .++|++.+++.+..+
T Consensus 97 ~~~~~~~k~~~~~~~I~idqiR~l~~~~~~~~--------~~~~~kV~iI~~ae~m~~~A-----aNaLLKtLEEPp~~t 163 (342)
T PRK06964 97 DADEGGKKTKAPSKEIKIEQVRALLDFCGVGT--------HRGGARVVVLYPAEALNVAA-----ANALLKTLEEPPPGT 163 (342)
T ss_pred hhhcccccccccccccCHHHHHHHHHHhccCC--------ccCCceEEEEechhhcCHHH-----HHHHHHHhcCCCcCc
Confidence 000000 0123466666665543221 12456799999999997643 377888899877666
Q ss_pred EEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHH
Q 009072 297 AVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIRQAI 376 (544)
Q Consensus 297 IiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~l~~Ia~~s~GDiR~aI 376 (544)
+||..+... -..++++++| |..|.|.||+.+++...|... + +++ .+.++..++|.+..|+
T Consensus 164 ~fiL~t~~~----------~~LLpTI~SR--cq~i~~~~~~~~~~~~~L~~~----~--~~~--~~~~l~~~~Gsp~~Al 223 (342)
T PRK06964 164 VFLLVSARI----------DRLLPTILSR--CRQFPMTVPAPEAAAAWLAAQ----G--VAD--ADALLAEAGGAPLAAL 223 (342)
T ss_pred EEEEEECCh----------hhCcHHHHhc--CEEEEecCCCHHHHHHHHHHc----C--CCh--HHHHHHHcCCCHHHHH
Confidence 666554221 1123455554 999999999999999998753 3 333 2345677899999988
Q ss_pred HHH
Q 009072 377 TSL 379 (544)
Q Consensus 377 n~L 379 (544)
..+
T Consensus 224 ~~~ 226 (342)
T PRK06964 224 ALA 226 (342)
T ss_pred HHH
Confidence 665
No 156
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.18 E-value=2.6e-10 Score=114.85 Aligned_cols=201 Identities=12% Similarity=0.096 Sum_probs=112.6
Q ss_pred cCCCCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCCchhhhhhhh
Q 009072 143 YKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIWQEYMH 222 (544)
Q Consensus 143 y~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~~~~~~e~l~ 222 (544)
|.|..-.+.+.++.....+..|+.. .+.++|.||||||||++++.+|+.++++++.++....-...+.++
T Consensus 39 ~~p~~d~~y~f~~~~~~~vl~~l~~----------~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG 108 (327)
T TIGR01650 39 HVPDIDPAYLFDKATTKAICAGFAY----------DRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVG 108 (327)
T ss_pred CCCCCCCCccCCHHHHHHHHHHHhc----------CCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCC
Confidence 3454445677888888888877743 167999999999999999999999999999998765432222221
Q ss_pred ccccCcccccchHHHH-HHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHHHHHhcC---------
Q 009072 223 NCKTGLEYTSKLDEFE-NFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRST--------- 292 (544)
Q Consensus 223 ~~~~g~~~~s~~~~~~-~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~~~~~~--------- 292 (544)
.....+........|+ ..+..+ ...+.++++||++..... .+..|+.+++..
T Consensus 109 ~~~~~l~~g~~~~~f~~GpL~~A-------------~~~g~illlDEin~a~p~-----~~~~L~~lLE~~~~l~i~~~~ 170 (327)
T TIGR01650 109 KDAIVLKDGKQITEFRDGILPWA-------------LQHNVALCFDEYDAGRPD-----VMFVIQRVLEAGGKLTLLDQN 170 (327)
T ss_pred CceeeccCCcceeEEecCcchhH-------------HhCCeEEEechhhccCHH-----HHHHHHHHhccCCeEEECCCc
Confidence 1000000000000000 001111 134678999999987543 223334443321
Q ss_pred ----CCcEE-EEEccCCCCCCCC---ccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHH
Q 009072 293 ----HIPTA-VVLTECGKADSVD---STAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLV 364 (544)
Q Consensus 293 ----~~piI-iI~t~~~~~~~~d---~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~l~~I 364 (544)
..|-+ +|+|. ++....| .|........+.+.|+ ..++.+.-|+.+.-.++|...+....-..++..++.+
T Consensus 171 ~~i~~hp~FrviAT~-Np~g~Gd~~G~y~Gt~~l~~A~lDRF-~i~~~~~Yp~~e~E~~Il~~~~~~~~~~~~~~i~~~m 248 (327)
T TIGR01650 171 RVIRAHPAFRLFATA-NTIGLGDTTGLYHGTQQINQAQMDRW-SIVTTLNYLEHDNEAAIVLAKAKGFDDTEGKDIINAM 248 (327)
T ss_pred eEecCCCCeEEEEee-CCCCcCCCCcceeeeecCCHHHHhhe-eeEeeCCCCCHHHHHHHHHhhccCCCccchHHHHHHH
Confidence 12334 44443 3322212 2444444446778875 4466888898888888887654221101135666777
Q ss_pred HHHcCCcHHH
Q 009072 365 AQASGGDIRQ 374 (544)
Q Consensus 365 a~~s~GDiR~ 374 (544)
++.+ ...|.
T Consensus 249 V~la-~~tR~ 257 (327)
T TIGR01650 249 VRVA-DMTRN 257 (327)
T ss_pred HHHH-HHHHh
Confidence 6654 44554
No 157
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=3.9e-10 Score=121.08 Aligned_cols=201 Identities=13% Similarity=0.171 Sum_probs=122.3
Q ss_pred ccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCCchhhhhhhhccccCcccc
Q 009072 152 AVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIWQEYMHNCKTGLEYT 231 (544)
Q Consensus 152 v~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~~~~~~e~l~~~~~g~~~~ 231 (544)
-|-++.++++.++|.-.... +....++|.|+||||+|||++++.+|+.+|-+++.+.-...+...|.-+..- ....
T Consensus 326 YGLekVKeRIlEyLAV~~l~--~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHRR--TYIG 401 (782)
T COG0466 326 YGLEKVKERILEYLAVQKLT--KKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHRR--TYIG 401 (782)
T ss_pred cCchhHHHHHHHHHHHHHHh--ccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccccc--cccc
Confidence 35678888888887554332 2333379999999999999999999999999999998766554333221111 1112
Q ss_pred cchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHHHHHhcCC---------------CcE
Q 009072 232 SKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTH---------------IPT 296 (544)
Q Consensus 232 s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~~~~~~~---------------~pi 296 (544)
+....+ ++.+.+.. ...-|+++||||.|+..- ...-..+|++.++..+ ..+
T Consensus 402 amPGrI---iQ~mkka~----------~~NPv~LLDEIDKm~ss~-rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~V 467 (782)
T COG0466 402 AMPGKI---IQGMKKAG----------VKNPVFLLDEIDKMGSSF-RGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKV 467 (782)
T ss_pred cCChHH---HHHHHHhC----------CcCCeEEeechhhccCCC-CCChHHHHHhhcCHhhcCchhhccccCccchhhe
Confidence 222333 33333222 123389999999985521 0011234555543211 247
Q ss_pred EEEEccCCCCCCCCccccchHHH-HHHHhhcCceeEEecCCCHHHHHHHHHHHH-----HHhC-----CCCCHHHHHHHH
Q 009072 297 AVVLTECGKADSVDSTAQSFEEL-QSILVDAGARKVALNPITNGSIKRTLSKIC-----RQEQ-----YSLSTEQIDLVA 365 (544)
Q Consensus 297 IiI~t~~~~~~~~d~~~~~l~~l-~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~-----~~e~-----~~i~~~~l~~Ia 365 (544)
+||||.+. ++.+ .+++.| ..+|++..++.++-..+.++.+ ...| +.++++++..|+
T Consensus 468 mFiaTANs-----------l~tIP~PLlDR--MEiI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~ai~~iI 534 (782)
T COG0466 468 MFIATANS-----------LDTIPAPLLDR--MEVIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEAIKDII 534 (782)
T ss_pred EEEeecCc-----------cccCChHHhcc--eeeeeecCCChHHHHHHHHHhcchHHHHHcCCCccceeecHHHHHHHH
Confidence 77777532 2212 456665 8999999999998877776654 2233 468899999998
Q ss_pred HHcC--CcHHHHHHHHHHhc
Q 009072 366 QASG--GDIRQAITSLQFSS 383 (544)
Q Consensus 366 ~~s~--GDiR~aIn~Lq~~~ 383 (544)
+..- --+|..=..+.-.|
T Consensus 535 ~~YTREAGVR~LeR~i~ki~ 554 (782)
T COG0466 535 RYYTREAGVRNLEREIAKIC 554 (782)
T ss_pred HHHhHhhhhhHHHHHHHHHH
Confidence 7632 12444444444444
No 158
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.13 E-value=6.8e-10 Score=114.68 Aligned_cols=102 Identities=17% Similarity=0.259 Sum_probs=71.0
Q ss_pred CceEEEEecCCCCCchh-------HHHHHHHHHHHHHhcCC----------CcEEEEEccCCCCCCCCccccchHHHHHH
Q 009072 260 SSAILLIDDLPVTNGRT-------AFERLRQCLLLLVRSTH----------IPTAVVLTECGKADSVDSTAQSFEELQSI 322 (544)
Q Consensus 260 ~~~vIlIDEid~l~~~~-------~~~~~~~~L~~~~~~~~----------~piIiI~t~~~~~~~~d~~~~~l~~l~~l 322 (544)
...||+|||||.+.... .-.++++.|+.+++.+. ..+.|||+...... ..-+.++.+
T Consensus 249 ~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~------kp~DlIPEl 322 (443)
T PRK05201 249 QNGIVFIDEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVS------KPSDLIPEL 322 (443)
T ss_pred cCCEEEEEcchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCC------ChhhccHHH
Confidence 45699999999874321 12457888998887643 25788887654321 122345777
Q ss_pred HhhcCceeEEecCCCHHHHHHHHHH----HHH-------HhCC--CCCHHHHHHHHHHc
Q 009072 323 LVDAGARKVALNPITNGSIKRTLSK----ICR-------QEQY--SLSTEQIDLVAQAS 368 (544)
Q Consensus 323 l~r~~~~~I~f~p~s~~~i~~~L~~----i~~-------~e~~--~i~~~~l~~Ia~~s 368 (544)
.-|+ ..++.+.+++.+++..+|.. +.. .+|+ .+++++++.||+.+
T Consensus 323 ~GR~-Pi~v~L~~L~~~dL~~ILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A 380 (443)
T PRK05201 323 QGRF-PIRVELDALTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRRIAEIA 380 (443)
T ss_pred hCcc-ceEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEcHHHHHHHHHHH
Confidence 7886 66899999999999999843 333 3454 57899999999875
No 159
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.13 E-value=9.2e-10 Score=113.67 Aligned_cols=102 Identities=18% Similarity=0.257 Sum_probs=70.8
Q ss_pred CceEEEEecCCCCCchh-------HHHHHHHHHHHHHhcCC----------CcEEEEEccCCCCCCCCccccchHHHHHH
Q 009072 260 SSAILLIDDLPVTNGRT-------AFERLRQCLLLLVRSTH----------IPTAVVLTECGKADSVDSTAQSFEELQSI 322 (544)
Q Consensus 260 ~~~vIlIDEid~l~~~~-------~~~~~~~~L~~~~~~~~----------~piIiI~t~~~~~~~~d~~~~~l~~l~~l 322 (544)
...||+|||+|.+.... .-.++++.|+.+++.+. ..+.|||+...... ..-+.++.+
T Consensus 247 ~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~------kp~DlIPEl 320 (441)
T TIGR00390 247 QSGIIFIDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLA------KPSDLIPEL 320 (441)
T ss_pred cCCEEEEEchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCC------ChhhccHHH
Confidence 45699999999874321 23457888999887643 25778887654321 122346777
Q ss_pred HhhcCceeEEecCCCHHHHHHHHHH----HH-------HHhCC--CCCHHHHHHHHHHc
Q 009072 323 LVDAGARKVALNPITNGSIKRTLSK----IC-------RQEQY--SLSTEQIDLVAQAS 368 (544)
Q Consensus 323 l~r~~~~~I~f~p~s~~~i~~~L~~----i~-------~~e~~--~i~~~~l~~Ia~~s 368 (544)
.-|+ ..++.+.+++.+++..+|.. +. ..+|+ .++++++..||+.+
T Consensus 321 ~GR~-Pi~v~L~~L~~edL~rILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A 378 (441)
T TIGR00390 321 QGRF-PIRVELQALTTDDFERILTEPKNSLIKQYKALMKTEGVNIEFSDEAIKRIAELA 378 (441)
T ss_pred hCcc-ceEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEeHHHHHHHHHHH
Confidence 7886 66899999999999999832 22 23454 57899999999875
No 160
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=7.4e-10 Score=118.37 Aligned_cols=201 Identities=13% Similarity=0.149 Sum_probs=121.1
Q ss_pred ccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCCchhhhhhhhccccCcccc
Q 009072 152 AVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIWQEYMHNCKTGLEYT 231 (544)
Q Consensus 152 v~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~~~~~~e~l~~~~~g~~~~ 231 (544)
-|-+++++++.+++.-... +|....+++.|+||||+|||+.++.||+.||-+++.+.-...+...+.-+..- ....
T Consensus 414 Ygm~dVKeRILEfiAV~kL--rgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHRR--TYVG 489 (906)
T KOG2004|consen 414 YGMEDVKERILEFIAVGKL--RGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGHRR--TYVG 489 (906)
T ss_pred cchHHHHHHHHHHHHHHhh--cccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcccce--eeec
Confidence 4556778888888754322 36666689999999999999999999999999998887554332222111100 0111
Q ss_pred cchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHHHHHhcCC---------------CcE
Q 009072 232 SKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTH---------------IPT 296 (544)
Q Consensus 232 s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~~~~~~~---------------~pi 296 (544)
.....+-+-+.. .. ..+| ++||||+|.+.... ...-..+|+++++.-+ ..+
T Consensus 490 AMPGkiIq~LK~---v~---------t~NP-liLiDEvDKlG~g~-qGDPasALLElLDPEQNanFlDHYLdVp~DLSkV 555 (906)
T KOG2004|consen 490 AMPGKIIQCLKK---VK---------TENP-LILIDEVDKLGSGH-QGDPASALLELLDPEQNANFLDHYLDVPVDLSKV 555 (906)
T ss_pred cCChHHHHHHHh---hC---------CCCc-eEEeehhhhhCCCC-CCChHHHHHHhcChhhccchhhhccccccchhhe
Confidence 222222222322 21 1233 89999999885311 0111234555543211 146
Q ss_pred EEEEccCCCCCCCCccccchHHH-HHHHhhcCceeEEecCCCHHHHHHHHHHHHHH----------hCCCCCHHHHHHHH
Q 009072 297 AVVLTECGKADSVDSTAQSFEEL-QSILVDAGARKVALNPITNGSIKRTLSKICRQ----------EQYSLSTEQIDLVA 365 (544)
Q Consensus 297 IiI~t~~~~~~~~d~~~~~l~~l-~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~----------e~~~i~~~~l~~Ia 365 (544)
+||||.+.. +.+ .+++.| ..+|.+..+..++-.++..+.+.. +.++++++++..|+
T Consensus 556 LFicTAN~i-----------dtIP~pLlDR--MEvIelsGYv~eEKv~IA~~yLip~a~~~~gl~~e~v~is~~al~~lI 622 (906)
T KOG2004|consen 556 LFICTANVI-----------DTIPPPLLDR--MEVIELSGYVAEEKVKIAERYLIPQALKDCGLKPEQVKISDDALLALI 622 (906)
T ss_pred EEEEecccc-----------ccCChhhhhh--hheeeccCccHHHHHHHHHHhhhhHHHHHcCCCHHhcCccHHHHHHHH
Confidence 888876321 222 345554 889999999999888777766532 34678999988888
Q ss_pred HHcC--CcHHHHHHHHHHhc
Q 009072 366 QASG--GDIRQAITSLQFSS 383 (544)
Q Consensus 366 ~~s~--GDiR~aIn~Lq~~~ 383 (544)
+..- --+|+.-.+++..|
T Consensus 623 ~~YcrEaGVRnLqk~iekI~ 642 (906)
T KOG2004|consen 623 ERYCREAGVRNLQKQIEKIC 642 (906)
T ss_pred HHHHHHHhHHHHHHHHHHHH
Confidence 7632 22555555555444
No 161
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.12 E-value=2.1e-09 Score=112.45 Aligned_cols=209 Identities=16% Similarity=0.226 Sum_probs=119.7
Q ss_pred hccChHHHHHHHHHHHHhhcCC-----CCC-----CCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCCchhhhhh
Q 009072 151 LAVQRKKVEEVRAWFEERLGDS-----KDK-----FSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIWQEY 220 (544)
Q Consensus 151 Lv~~~~~~~~l~~wL~~~~~~~-----~g~-----~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~~~~~~e~ 220 (544)
++|+++.++.+...+..+.... ... ....++||+||||||||++|+++|+.++.++..+++....
T Consensus 79 ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~----- 153 (413)
T TIGR00382 79 VIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLT----- 153 (413)
T ss_pred ecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhcc-----
Confidence 5789999988877764433221 010 1136899999999999999999999999999887765311
Q ss_pred hhccccCccccc--chHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchh--------H-HHHHHHHHHHHH
Q 009072 221 MHNCKTGLEYTS--KLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRT--------A-FERLRQCLLLLV 289 (544)
Q Consensus 221 l~~~~~g~~~~s--~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~--------~-~~~~~~~L~~~~ 289 (544)
..+|.. ....+...+... .+. + ....+.||+|||+|.+..+. . -..+++.|++++
T Consensus 154 ------~~gyvG~d~e~~L~~~~~~~-~~~-l------~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iL 219 (413)
T TIGR00382 154 ------EAGYVGEDVENILLKLLQAA-DYD-V------EKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKII 219 (413)
T ss_pred ------ccccccccHHHHHHHHHHhC-ccc-H------HhcccceEEecccchhchhhccccccccccchhHHHHHHHHh
Confidence 111211 111222222211 110 0 01235699999999875421 0 114667788877
Q ss_pred hcC---------C----CcEEEEEccCC--------CC------------------CCCC-ccc--cch-----------
Q 009072 290 RST---------H----IPTAVVLTECG--------KA------------------DSVD-STA--QSF----------- 316 (544)
Q Consensus 290 ~~~---------~----~piIiI~t~~~--------~~------------------~~~d-~~~--~~l----------- 316 (544)
+.. + .+.|+|.|.+- .+ ...+ ... ..+
T Consensus 220 eG~~~~v~~~~gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~ 299 (413)
T TIGR00382 220 EGTVANVPPQGGRKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKF 299 (413)
T ss_pred hccceecccCCCccccCCCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHH
Confidence 421 0 13344443321 00 0000 000 000
Q ss_pred HHHHHHHhhcCceeEEecCCCHHHHHHHHHH----HHHH-------hC--CCCCHHHHHHHHHHc------CCcHHHHHH
Q 009072 317 EELQSILVDAGARKVALNPITNGSIKRTLSK----ICRQ-------EQ--YSLSTEQIDLVAQAS------GGDIRQAIT 377 (544)
Q Consensus 317 ~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~----i~~~-------e~--~~i~~~~l~~Ia~~s------~GDiR~aIn 377 (544)
-..++++.|. ..++.|+|++.+++.+++.. ++.+ .+ +.+++++++.|++.+ ...+|+.|.
T Consensus 300 g~~PEflgRl-d~Iv~f~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~iie 378 (413)
T TIGR00382 300 GLIPEFIGRL-PVIATLEKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTGARGLRSIVE 378 (413)
T ss_pred hhHHHHhCCC-CeEeecCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchHHHHHHH
Confidence 0124566663 46788999999999999876 2321 13 357899999999984 245777776
Q ss_pred HH
Q 009072 378 SL 379 (544)
Q Consensus 378 ~L 379 (544)
..
T Consensus 379 ~~ 380 (413)
T TIGR00382 379 GL 380 (413)
T ss_pred Hh
Confidence 54
No 162
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.12 E-value=3e-09 Score=105.94 Aligned_cols=168 Identities=13% Similarity=0.158 Sum_probs=91.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCCchhhhhhhhccccCcccccchHHHHHHHHHHHhhcCCCC-CC-CC
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSP-SI-PG 256 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~~~~~~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~-~~-~~ 256 (544)
..++|+||||||||++|+++|+.+|.+++.++........+.++.. .+ +. ....+..++........... .. .+
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~-~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~g 97 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSY-AG--YT-RKKVHDQFIHNVVKLEDIVRQNWVDN 97 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhh-cc--cc-hhhHHHHHHHHhhhhhcccceeecCc
Confidence 5799999999999999999999999999998876432222222110 00 00 00111122211111000000 00 00
Q ss_pred ----CCCCceEEEEecCCCCCchhHHHHHHHHHHHHHhcCC----------------CcEEEEEccCCCCCCCCccccch
Q 009072 257 ----ESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTH----------------IPTAVVLTECGKADSVDSTAQSF 316 (544)
Q Consensus 257 ----~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~~~~~~~----------------~piIiI~t~~~~~~~~d~~~~~l 316 (544)
....+.+++|||++.+... +++.|+.+++... .+..+|+|.+.. .+....
T Consensus 98 ~l~~A~~~g~~lllDEi~r~~~~-----~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~-----~~~g~~ 167 (262)
T TIGR02640 98 RLTLAVREGFTLVYDEFTRSKPE-----TNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPV-----EYAGVH 167 (262)
T ss_pred hHHHHHHcCCEEEEcchhhCCHH-----HHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCc-----ccccee
Confidence 0023459999999997642 3445555554321 122334433211 011111
Q ss_pred HHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 009072 317 EELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQA 367 (544)
Q Consensus 317 ~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~l~~Ia~~ 367 (544)
+...+++.| +..+.+..|+.++..+++...+ .++++.++.|++.
T Consensus 168 ~l~~aL~~R--~~~i~i~~P~~~~e~~Il~~~~-----~~~~~~~~~iv~~ 211 (262)
T TIGR02640 168 ETQDALLDR--LITIFMDYPDIDTETAILRAKT-----DVAEDSAATIVRL 211 (262)
T ss_pred cccHHHHhh--cEEEECCCCCHHHHHHHHHHhh-----CCCHHHHHHHHHH
Confidence 112455555 7789999999998888888653 4677777777665
No 163
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=1.1e-09 Score=123.16 Aligned_cols=206 Identities=12% Similarity=0.115 Sum_probs=134.3
Q ss_pred CCCcchhccChHHHHHHHHHHHHhhcCCC-----CCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCCchhhhh
Q 009072 145 PRSLEELAVQRKKVEEVRAWFEERLGDSK-----DKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIWQE 219 (544)
Q Consensus 145 P~~~~dLv~~~~~~~~l~~wL~~~~~~~~-----g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~~~~~~e 219 (544)
-..|++++|-+..+.++++.+-..+..++ +-.|++.+||+||||+|||..|+++|..+.-.--.+. +..
T Consensus 261 ~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kis------ffm 334 (1080)
T KOG0732|consen 261 SVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKIS------FFM 334 (1080)
T ss_pred ccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccc------hhh
Confidence 35789999999999999998866554432 4445689999999999999999999998732111110 000
Q ss_pred hhhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCch-----hH-HHHHHHHHHHHHhc--
Q 009072 220 YMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGR-----TA-FERLRQCLLLLVRS-- 291 (544)
Q Consensus 220 ~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~-----~~-~~~~~~~L~~~~~~-- 291 (544)
.-++.-.+.+......+++-.++++.+. .|.||++||||++..- +. ...+...|+.++..
T Consensus 335 rkgaD~lskwvgEaERqlrllFeeA~k~------------qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGld 402 (1080)
T KOG0732|consen 335 RKGADCLSKWVGEAERQLRLLFEEAQKT------------QPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLD 402 (1080)
T ss_pred hcCchhhccccCcHHHHHHHHHHHHhcc------------CceEEeccccccccccccchHHHhhhhHHHHHHHhccCCC
Confidence 0000112334445557778888887643 5889999999987431 11 12234556666553
Q ss_pred CCCcEEEEEccCCCCCCCCccccchHHHHHHHhhcC--ceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcC
Q 009072 292 THIPTAVVLTECGKADSVDSTAQSFEELQSILVDAG--ARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASG 369 (544)
Q Consensus 292 ~~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~--~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~l~~Ia~~s~ 369 (544)
++.++|+| +.++. .+.+.+.++|++ ...+.|+-|+.+...++|...-.+..-.++...+..|++.+.
T Consensus 403 sRgqVvvi-gATnR----------pda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~ 471 (1080)
T KOG0732|consen 403 SRGQVVVI-GATNR----------PDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETS 471 (1080)
T ss_pred CCCceEEE-cccCC----------ccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhcc
Confidence 33345554 44332 223344444432 456888888888888888866666667789999999999988
Q ss_pred CcHHHHHHHH
Q 009072 370 GDIRQAITSL 379 (544)
Q Consensus 370 GDiR~aIn~L 379 (544)
|-...-|..|
T Consensus 472 gy~gaDlkaL 481 (1080)
T KOG0732|consen 472 GYGGADLKAL 481 (1080)
T ss_pred ccchHHHHHH
Confidence 8666654444
No 164
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=99.11 E-value=1.6e-09 Score=111.29 Aligned_cols=218 Identities=20% Similarity=0.284 Sum_probs=129.1
Q ss_pred CCcccccCCCCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhC-----CeEEEEeC
Q 009072 137 QLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLG-----ARLYEWDT 211 (544)
Q Consensus 137 ~lW~eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg-----~~viei~~ 211 (544)
......++|.+ +.|++.....++.|+..+... ..+ +.+.++|.||+|||.+..-+...+. ...+.+|.
T Consensus 141 ~~l~~t~~p~~---l~gRe~e~~~v~~F~~~hle~---~t~-gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc 213 (529)
T KOG2227|consen 141 ESLLNTAPPGT---LKGRELEMDIVREFFSLHLEL---NTS-GSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINC 213 (529)
T ss_pred HHHHhcCCCCC---ccchHHHHHHHHHHHHhhhhc---ccC-cceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEee
Confidence 34455667765 499999999999999998763 222 7899999999999999997766653 34566776
Q ss_pred CCch----hhhhhhhccccCccc-ccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHH
Q 009072 212 PTPT----IWQEYMHNCKTGLEY-TSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLL 286 (544)
Q Consensus 212 s~~~----~~~e~l~~~~~g~~~-~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~ 286 (544)
.... .|.........+... ....+..+.|-...... ..+.|+++||+|.+..++ +.+.-.|-
T Consensus 214 ~sl~~~~aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~-----------k~~~llVlDEmD~L~tr~--~~vLy~lF 280 (529)
T KOG2227|consen 214 TSLTEASAIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQS-----------KFMLLLVLDEMDHLITRS--QTVLYTLF 280 (529)
T ss_pred ccccchHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcc-----------cceEEEEechhhHHhhcc--cceeeeeh
Confidence 5422 222222211011110 11122233333332221 357899999999986432 12221222
Q ss_pred HHHhcCCCcE-EEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHHhCCC-CCHHHHHHH
Q 009072 287 LLVRSTHIPT-AVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYS-LSTEQIDLV 364 (544)
Q Consensus 287 ~~~~~~~~pi-IiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~-i~~~~l~~I 364 (544)
++-......+ +|.+++ ..|...+.|..|..-+. .-...+.|.|++.++|..+|+..+..+... +-+.+++.+
T Consensus 281 ewp~lp~sr~iLiGiAN-----slDlTdR~LprL~~~~~-~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ 354 (529)
T KOG2227|consen 281 EWPKLPNSRIILIGIAN-----SLDLTDRFLPRLNLDLT-IKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELC 354 (529)
T ss_pred hcccCCcceeeeeeehh-----hhhHHHHHhhhhhhccC-CCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHH
Confidence 3322222222 222332 13334444444433111 124689999999999999999998876543 334567666
Q ss_pred HHH---cCCcHHHHHHHHH
Q 009072 365 AQA---SGGDIRQAITSLQ 380 (544)
Q Consensus 365 a~~---s~GDiR~aIn~Lq 380 (544)
|.. ..||+|.|+...+
T Consensus 355 ArKvaa~SGDlRkaLdv~R 373 (529)
T KOG2227|consen 355 ARKVAAPSGDLRKALDVCR 373 (529)
T ss_pred HHHhccCchhHHHHHHHHH
Confidence 654 6799999998887
No 165
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=99.09 E-value=2.3e-09 Score=114.84 Aligned_cols=212 Identities=18% Similarity=0.271 Sum_probs=130.7
Q ss_pred hccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHh----------CCeEEEEeCCCchh---h
Q 009072 151 LAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL----------GARLYEWDTPTPTI---W 217 (544)
Q Consensus 151 Lv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~el----------g~~viei~~s~~~~---~ 217 (544)
|..++....+|..++...+.. .+.. ..+.++|-||+|||.+++.+.++| .+.++|+|+..... .
T Consensus 398 LpcRe~E~~~I~~f~~~~i~~-~~~g--~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~ 474 (767)
T KOG1514|consen 398 LPCRENEFSEIEDFLRSFISD-QGLG--SCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREI 474 (767)
T ss_pred ccchhHHHHHHHHHHHhhcCC-CCCc--eeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHH
Confidence 477888888888888887764 2322 589999999999999999999976 47889999875432 2
Q ss_pred hhhhhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHHHHHhcCCCcEE
Q 009072 218 QEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPTA 297 (544)
Q Consensus 218 ~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~~~~~~~~piI 297 (544)
++.+.....|-... ...-++.+..+-. ......+++||||||+|.+-++. +.++.-+..+......+++
T Consensus 475 Y~~I~~~lsg~~~~-----~~~al~~L~~~f~----~~k~~~~~~VvLiDElD~Lvtr~--QdVlYn~fdWpt~~~sKLv 543 (767)
T KOG1514|consen 475 YEKIWEALSGERVT-----WDAALEALNFRFT----VPKPKRSTTVVLIDELDILVTRS--QDVLYNIFDWPTLKNSKLV 543 (767)
T ss_pred HHHHHHhcccCccc-----HHHHHHHHHHhhc----cCCCCCCCEEEEeccHHHHhccc--HHHHHHHhcCCcCCCCceE
Confidence 22222222222111 1111222221111 12234678999999999985532 1233223344333334444
Q ss_pred EEE-ccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH---cCCcHH
Q 009072 298 VVL-TECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQA---SGGDIR 373 (544)
Q Consensus 298 iI~-t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~l~~Ia~~---s~GDiR 373 (544)
+|+ +++. |.--+.+. ..+-+|.+...|.|+|++.+++..++...+..- -.+..++++.++.. -.||.|
T Consensus 544 vi~IaNTm-----dlPEr~l~--nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~-~~f~~~aielvarkVAavSGDaR 615 (767)
T KOG1514|consen 544 VIAIANTM-----DLPERLLM--NRVSSRLGLTRICFQPYTHEQLQEIISARLKGL-DAFENKAIELVARKVAAVSGDAR 615 (767)
T ss_pred EEEecccc-----cCHHHHhc--cchhhhccceeeecCCCCHHHHHHHHHHhhcch-hhcchhHHHHHHHHHHhccccHH
Confidence 443 3321 21111110 123356788999999999999999988776543 24567777666644 569999
Q ss_pred HHHHHHHHhcc
Q 009072 374 QAITSLQFSSL 384 (544)
Q Consensus 374 ~aIn~Lq~~~~ 384 (544)
+|+.....+.-
T Consensus 616 raldic~RA~E 626 (767)
T KOG1514|consen 616 RALDICRRAAE 626 (767)
T ss_pred HHHHHHHHHHH
Confidence 99998877764
No 166
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.09 E-value=3.3e-09 Score=121.62 Aligned_cols=198 Identities=14% Similarity=0.213 Sum_probs=117.5
Q ss_pred chhccChHHHHHHHHHHHHhhcCC-CCCCCccEEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeCCCchhh---hhhh
Q 009072 149 EELAVQRKKVEEVRAWFEERLGDS-KDKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTPTPTIW---QEYM 221 (544)
Q Consensus 149 ~dLv~~~~~~~~l~~wL~~~~~~~-~g~~~~~~lLL~GPpG~GKTtla~~lA~el---g~~viei~~s~~~~~---~e~l 221 (544)
..++|++..++.|...+....... ....|...+||+||+|||||++|++||+.+ +..++.++.+..... ...+
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l~ 588 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKLI 588 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHHHhc
Confidence 447899999999998887654311 111122468999999999999999999997 356777776542211 1111
Q ss_pred hccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHHHHHhcCC--------
Q 009072 222 HNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTH-------- 293 (544)
Q Consensus 222 ~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~~~~~~~-------- 293 (544)
+......++.. ...+ .+.+.. .+..||||||+|.+.. .+++.|+++++.+.
T Consensus 589 g~~~gyvg~~~-~~~l---~~~~~~------------~p~~VvllDeieka~~-----~v~~~Llq~le~g~~~d~~g~~ 647 (821)
T CHL00095 589 GSPPGYVGYNE-GGQL---TEAVRK------------KPYTVVLFDEIEKAHP-----DIFNLLLQILDDGRLTDSKGRT 647 (821)
T ss_pred CCCCcccCcCc-cchH---HHHHHh------------CCCeEEEECChhhCCH-----HHHHHHHHHhccCceecCCCcE
Confidence 11111111111 1112 222221 2347999999998754 35567788877642
Q ss_pred ---CcEEEEEccC-CCCCC----C-------Ccc--ccchHHH-------------HHHHhhcCceeEEecCCCHHHHHH
Q 009072 294 ---IPTAVVLTEC-GKADS----V-------DST--AQSFEEL-------------QSILVDAGARKVALNPITNGSIKR 343 (544)
Q Consensus 294 ---~piIiI~t~~-~~~~~----~-------d~~--~~~l~~l-------------~~ll~r~~~~~I~f~p~s~~~i~~ 343 (544)
...|||+|.+ ..... . ... ......+ +++++|. ..+|.|+|++.+++.+
T Consensus 648 v~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~peflnRi-d~ii~F~pL~~~~l~~ 726 (821)
T CHL00095 648 IDFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLNRL-DEIIVFRQLTKNDVWE 726 (821)
T ss_pred EecCceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhccC-CeEEEeCCCCHHHHHH
Confidence 2345555433 22100 0 000 0000101 3456663 4789999999999999
Q ss_pred HHHHHHHH-------h--CCCCCHHHHHHHHHHc
Q 009072 344 TLSKICRQ-------E--QYSLSTEQIDLVAQAS 368 (544)
Q Consensus 344 ~L~~i~~~-------e--~~~i~~~~l~~Ia~~s 368 (544)
++...+.. . .+.+++++++.|++..
T Consensus 727 Iv~~~l~~l~~rl~~~~i~l~~~~~~~~~La~~~ 760 (821)
T CHL00095 727 IAEIMLKNLFKRLNEQGIQLEVTERIKTLLIEEG 760 (821)
T ss_pred HHHHHHHHHHHHHHHCCcEEEECHHHHHHHHHhc
Confidence 98877653 2 2468999999999973
No 167
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.09 E-value=1.6e-09 Score=105.10 Aligned_cols=198 Identities=15% Similarity=0.288 Sum_probs=102.7
Q ss_pred hccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhCC---eEEEEeCCCchh---hhhh----
Q 009072 151 LAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGA---RLYEWDTPTPTI---WQEY---- 220 (544)
Q Consensus 151 Lv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg~---~viei~~s~~~~---~~e~---- 220 (544)
++|+++.+++|.+++.. +. .+.++|+||.|+|||++++.+.+.+.- .++.+....... ....
T Consensus 1 F~gR~~el~~l~~~l~~------~~--~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ 72 (234)
T PF01637_consen 1 FFGREKELEKLKELLES------GP--SQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFIEET 72 (234)
T ss_dssp S-S-HHHHHHHHHCHHH----------SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHh------hc--CcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHHHHH
Confidence 46889999999998876 21 278999999999999999999998832 222222211110 0000
Q ss_pred ---------hhccccCc--------ccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCC-chhHHHHHH
Q 009072 221 ---------MHNCKTGL--------EYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTN-GRTAFERLR 282 (544)
Q Consensus 221 ---------l~~~~~g~--------~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~-~~~~~~~~~ 282 (544)
+.....+. ........+..+++.+... ..+.||+|||++.+. .......+.
T Consensus 73 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~-----------~~~~iiviDe~~~~~~~~~~~~~~~ 141 (234)
T PF01637_consen 73 SLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKK-----------GKKVIIVIDEFQYLAIASEEDKDFL 141 (234)
T ss_dssp HHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHC-----------HCCEEEEEETGGGGGBCTTTTHHHH
T ss_pred HHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhc-----------CCcEEEEEecHHHHhhcccchHHHH
Confidence 11000000 0112234566666666543 234899999999987 211122333
Q ss_pred HHHHHHHhc--CCCcE-EEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHHhCCCC--C
Q 009072 283 QCLLLLVRS--THIPT-AVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSL--S 357 (544)
Q Consensus 283 ~~L~~~~~~--~~~pi-IiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i--~ 357 (544)
..|..+++. ...++ +++++... ...........+...+ ...+.+.|.+.++..+++...+... ..+ +
T Consensus 142 ~~l~~~~~~~~~~~~~~~v~~~S~~-----~~~~~~~~~~~~~~~~--~~~~~l~~l~~~e~~~~~~~~~~~~-~~~~~~ 213 (234)
T PF01637_consen 142 KSLRSLLDSLLSQQNVSIVITGSSD-----SLMEEFLDDKSPLFGR--FSHIELKPLSKEEAREFLKELFKEL-IKLPFS 213 (234)
T ss_dssp HHHHHHHHH----TTEEEEEEESSH-----HHHHHTT-TTSTTTT-----EEEE----HHHHHHHHHHHHHCC-------
T ss_pred HHHHHHHhhccccCCceEEEECCch-----HHHHHhhcccCccccc--cceEEEeeCCHHHHHHHHHHHHHHh-hcccCC
Confidence 344444443 12223 33333210 0000000001122333 5569999999999999999987665 544 9
Q ss_pred HHHHHHHHHHcCCcHHHH
Q 009072 358 TEQIDLVAQASGGDIRQA 375 (544)
Q Consensus 358 ~~~l~~Ia~~s~GDiR~a 375 (544)
++.++.|...++|.++..
T Consensus 214 ~~~~~~i~~~~gG~P~~l 231 (234)
T PF01637_consen 214 DEDIEEIYSLTGGNPRYL 231 (234)
T ss_dssp HHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHHhCCCHHHH
Confidence 999999999999998863
No 168
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=2.9e-09 Score=117.55 Aligned_cols=198 Identities=18% Similarity=0.250 Sum_probs=124.1
Q ss_pred hhccChHHHHHHHHHHHHhhcCCC-CCCCccEEEEEcCCCCcHHHHHHHHHHHhC---CeEEEEeCCCchhh---hhhhh
Q 009072 150 ELAVQRKKVEEVRAWFEERLGDSK-DKFSTNVLVITGQAGVGKTATVRQIASHLG---ARLYEWDTPTPTIW---QEYMH 222 (544)
Q Consensus 150 dLv~~~~~~~~l~~wL~~~~~~~~-g~~~~~~lLL~GPpG~GKTtla~~lA~elg---~~viei~~s~~~~~---~e~l~ 222 (544)
-++|++..+..|.+.++..+..-. .+-|....||.||+|+|||.+|++||..+. -.++.++-|..... ...++
T Consensus 492 rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLIG 571 (786)
T COG0542 492 RVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSRLIG 571 (786)
T ss_pred ceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHHHHhC
Confidence 368999999999999988765321 122336899999999999999999999997 66777776653311 12222
Q ss_pred ccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHHHHHhcCCC--------
Q 009072 223 NCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHI-------- 294 (544)
Q Consensus 223 ~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~~~~~~~~-------- 294 (544)
.....++|.. ... +-+.++ .++..|||+|||+... ..+.+.|++.++.++.
T Consensus 572 aPPGYVGyee-GG~---LTEaVR------------r~PySViLlDEIEKAH-----pdV~nilLQVlDdGrLTD~~Gr~V 630 (786)
T COG0542 572 APPGYVGYEE-GGQ---LTEAVR------------RKPYSVILLDEIEKAH-----PDVFNLLLQVLDDGRLTDGQGRTV 630 (786)
T ss_pred CCCCCceecc-ccc---hhHhhh------------cCCCeEEEechhhhcC-----HHHHHHHHHHhcCCeeecCCCCEE
Confidence 2222333322 111 111111 1346799999999854 4577889998887541
Q ss_pred ---c-EEEEEccCCCCCCCCccc----c--------chHHH-----HHHHhhcCceeEEecCCCHHHHHHHHHHHHHH--
Q 009072 295 ---P-TAVVLTECGKADSVDSTA----Q--------SFEEL-----QSILVDAGARKVALNPITNGSIKRTLSKICRQ-- 351 (544)
Q Consensus 295 ---p-iIiI~t~~~~~~~~d~~~----~--------~l~~l-----~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~-- 351 (544)
. +||+++|.+......... . ....+ +++++|. ..+|.|+|++.+.+.+++...+..
T Consensus 631 dFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLNRi-d~II~F~~L~~~~l~~Iv~~~L~~l~ 709 (786)
T COG0542 631 DFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLNRI-DEIIPFNPLSKEVLERIVDLQLNRLA 709 (786)
T ss_pred ecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHhhc-ccEEeccCCCHHHHHHHHHHHHHHHH
Confidence 3 444444433221110000 0 00111 3556664 459999999999999888776543
Q ss_pred -----hC--CCCCHHHHHHHHHHcC
Q 009072 352 -----EQ--YSLSTEQIDLVAQASG 369 (544)
Q Consensus 352 -----e~--~~i~~~~l~~Ia~~s~ 369 (544)
.+ +.+++++.+.|++.+.
T Consensus 710 ~~L~~~~i~l~~s~~a~~~l~~~gy 734 (786)
T COG0542 710 KRLAERGITLELSDEAKDFLAEKGY 734 (786)
T ss_pred HHHHhCCceEEECHHHHHHHHHhcc
Confidence 23 4578999999998853
No 169
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=99.06 E-value=4.6e-09 Score=104.58 Aligned_cols=153 Identities=13% Similarity=0.092 Sum_probs=99.2
Q ss_pred CCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEE--------EEeCCCchhhhhhhhccccCcccccchHHHHHHHHHHH
Q 009072 174 DKFSTNVLVITGQAGVGKTATVRQIASHLGARLY--------EWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIR 245 (544)
Q Consensus 174 g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~vi--------ei~~s~~~~~~e~l~~~~~g~~~~s~~~~~~~~l~~~~ 245 (544)
|+.+ +.+||+||+|+||+++|..+|+.+-+.-. .-+.||.... ...+....-..+.++++...+.
T Consensus 16 ~rl~-HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i------~p~~~~~~I~idqiR~l~~~~~ 88 (290)
T PRK05917 16 QKVP-SAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEF------SPQGKGRLHSIETPRAIKKQIW 88 (290)
T ss_pred CCcC-eeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEE------ecCCCCCcCcHHHHHHHHHHHh
Confidence 6666 89999999999999999999999865310 1112221100 0011111113466777666654
Q ss_pred hhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHHHHHhcCCCcEEEEEccCCCCCCCCccccchHHHHHHHhh
Q 009072 246 RYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVD 325 (544)
Q Consensus 246 ~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~~~~~~~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r 325 (544)
..+ ..+..+|++||++|.++.. ..++|++.+++.+..++||..+... -..++.+.+|
T Consensus 89 ~~p--------~e~~~kv~ii~~ad~mt~~-----AaNaLLK~LEEPp~~~~fiL~~~~~----------~~ll~TI~SR 145 (290)
T PRK05917 89 IHP--------YESPYKIYIIHEADRMTLD-----AISAFLKVLEDPPQHGVIILTSAKP----------QRLPPTIRSR 145 (290)
T ss_pred hCc--------cCCCceEEEEechhhcCHH-----HHHHHHHHhhcCCCCeEEEEEeCCh----------hhCcHHHHhc
Confidence 332 2245789999999999754 3478999999987666666544221 1123455554
Q ss_pred cCceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHH
Q 009072 326 AGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIR 373 (544)
Q Consensus 326 ~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~l~~Ia~~s~GDiR 373 (544)
|..+.|+++ +...++++.+..++..++|++.
T Consensus 146 --cq~~~~~~~---------------~~~~i~~~~~~~l~~~~~g~~~ 176 (290)
T PRK05917 146 --SLSIHIPME---------------EKTLVSKEDIAYLIGYAQGKES 176 (290)
T ss_pred --ceEEEccch---------------hccCCCHHHHHHHHHHhCCChh
Confidence 999999886 1224788889999999999986
No 170
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.05 E-value=1.3e-08 Score=117.17 Aligned_cols=213 Identities=18% Similarity=0.214 Sum_probs=126.9
Q ss_pred chhccChHHHHHHHHHHHHhhcCCC-CCCCccEEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeCCCchh---hhhhh
Q 009072 149 EELAVQRKKVEEVRAWFEERLGDSK-DKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTPTPTI---WQEYM 221 (544)
Q Consensus 149 ~dLv~~~~~~~~l~~wL~~~~~~~~-g~~~~~~lLL~GPpG~GKTtla~~lA~el---g~~viei~~s~~~~---~~e~l 221 (544)
..++|++..++.|...+......-. ...|...+||+||||||||++|++||+.+ +..++.++.+.... ....+
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~~l~ 644 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVARLI 644 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchHHHhc
Confidence 3588999999999999887543110 11123579999999999999999999987 45677777664221 11111
Q ss_pred hccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHHHHHhcCC--------
Q 009072 222 HNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTH-------- 293 (544)
Q Consensus 222 ~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~~~~~~~-------- 293 (544)
+......++.. .. .+.+.+.. .+..||||||++.++. .+++.|+++++.+.
T Consensus 645 g~~~g~~g~~~-~g---~l~~~v~~------------~p~~vlllDeieka~~-----~v~~~Ll~~l~~g~l~d~~g~~ 703 (852)
T TIGR03346 645 GAPPGYVGYEE-GG---QLTEAVRR------------KPYSVVLFDEVEKAHP-----DVFNVLLQVLDDGRLTDGQGRT 703 (852)
T ss_pred CCCCCccCccc-cc---HHHHHHHc------------CCCcEEEEeccccCCH-----HHHHHHHHHHhcCceecCCCeE
Confidence 11111111111 01 12222221 2246999999998754 34566777776542
Q ss_pred ----CcEEEEEccCCCCCCCCcc-----cc----chHHH-----HHHHhhcCceeEEecCCCHHHHHHHHHHHHHH----
Q 009072 294 ----IPTAVVLTECGKADSVDST-----AQ----SFEEL-----QSILVDAGARKVALNPITNGSIKRTLSKICRQ---- 351 (544)
Q Consensus 294 ----~piIiI~t~~~~~~~~d~~-----~~----~l~~l-----~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~---- 351 (544)
..+||++++.......+.. .. ....+ +.++.|. ..++.|.|++.+++.+++...+..
T Consensus 704 vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~Ri-d~IivF~PL~~e~l~~I~~l~L~~l~~~ 782 (852)
T TIGR03346 704 VDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRI-DEIVVFHPLGREQIARIVEIQLGRLRKR 782 (852)
T ss_pred EecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhcCc-CeEEecCCcCHHHHHHHHHHHHHHHHHH
Confidence 2344444443222111100 00 00001 2355553 478999999999999998877642
Q ss_pred ---h--CCCCCHHHHHHHHHHc---CCcHHHHHHHHHHhc
Q 009072 352 ---E--QYSLSTEQIDLVAQAS---GGDIRQAITSLQFSS 383 (544)
Q Consensus 352 ---e--~~~i~~~~l~~Ia~~s---~GDiR~aIn~Lq~~~ 383 (544)
. .+.+++++++.|++.. .+.+|..-+.++-..
T Consensus 783 l~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~i 822 (852)
T TIGR03346 783 LAERKITLELSDAALDFLAEAGYDPVYGARPLKRAIQREI 822 (852)
T ss_pred HHHCCCeecCCHHHHHHHHHhCCCCCCCchhHHHHHHHHH
Confidence 1 2568999999999973 467777766666554
No 171
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=2.3e-09 Score=118.33 Aligned_cols=209 Identities=18% Similarity=0.230 Sum_probs=146.3
Q ss_pred CCcccccCCCCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHh----------CCeE
Q 009072 137 QLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL----------GARL 206 (544)
Q Consensus 137 ~lW~eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~el----------g~~v 206 (544)
.-.++.-+-..++.++|+++.++++...|....+ ++-+|.|+||+|||+.+.-+|... +..+
T Consensus 158 ~dlt~~Ar~gklDPvIGRd~EI~r~iqIL~RR~K--------NNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i 229 (786)
T COG0542 158 RDLTELAREGKLDPVIGRDEEIRRTIQILSRRTK--------NNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRI 229 (786)
T ss_pred hhhHHHHhcCCCCCCcChHHHHHHHHHHHhccCC--------CCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEE
Confidence 3455666677889999999999999998876432 567899999999999999999986 3344
Q ss_pred EEEeCCCchhhhhhhhccccCcccc-cchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHH----HHH
Q 009072 207 YEWDTPTPTIWQEYMHNCKTGLEYT-SKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAF----ERL 281 (544)
Q Consensus 207 iei~~s~~~~~~e~l~~~~~g~~~~-s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~----~~~ 281 (544)
+.++ +.....|..|. ...+.++.+++.+... . +.|+||||++.+-+.++. -..
T Consensus 230 ~sLD----------~g~LvAGakyRGeFEeRlk~vl~ev~~~-----------~-~vILFIDEiHtiVGAG~~~G~a~DA 287 (786)
T COG0542 230 YSLD----------LGSLVAGAKYRGEFEERLKAVLKEVEKS-----------K-NVILFIDEIHTIVGAGATEGGAMDA 287 (786)
T ss_pred EEec----------HHHHhccccccCcHHHHHHHHHHHHhcC-----------C-CeEEEEechhhhcCCCcccccccch
Confidence 4433 22234555554 4556777777777543 3 789999999987443221 124
Q ss_pred HHHHHHHHhcCCCcEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHHh----CCCCC
Q 009072 282 RQCLLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQE----QYSLS 357 (544)
Q Consensus 282 ~~~L~~~~~~~~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e----~~~i~ 357 (544)
.+.|...+..+.. -||.+++ .+-|.+..++..++-+ |.+.|..+.|+.++...+|+-+..+. ++.++
T Consensus 288 aNiLKPaLARGeL--~~IGATT-----~~EYRk~iEKD~AL~R--RFQ~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~ 358 (786)
T COG0542 288 ANLLKPALARGEL--RCIGATT-----LDEYRKYIEKDAALER--RFQKVLVDEPSVEDTIAILRGLKERYEAHHGVRIT 358 (786)
T ss_pred hhhhHHHHhcCCe--EEEEecc-----HHHHHHHhhhchHHHh--cCceeeCCCCCHHHHHHHHHHHHHHHHHccCceec
Confidence 4677777777654 4554443 2345556666555444 48999999999999999999887653 67899
Q ss_pred HHHHHHHHHHcCCcH------HHHHHHHHHhcc
Q 009072 358 TEQIDLVAQASGGDI------RQAITSLQFSSL 384 (544)
Q Consensus 358 ~~~l~~Ia~~s~GDi------R~aIn~Lq~~~~ 384 (544)
++++.+.+..|+--| .+||..+.-+|.
T Consensus 359 D~Al~aAv~LS~RYI~dR~LPDKAIDLiDeA~a 391 (786)
T COG0542 359 DEALVAAVTLSDRYIPDRFLPDKAIDLLDEAGA 391 (786)
T ss_pred HHHHHHHHHHHHhhcccCCCCchHHHHHHHHHH
Confidence 999999988876443 456666655554
No 172
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.02 E-value=4.9e-08 Score=92.43 Aligned_cols=208 Identities=19% Similarity=0.200 Sum_probs=137.5
Q ss_pred ccccCCCCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeCCCchh
Q 009072 140 AEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTPTPTI 216 (544)
Q Consensus 140 ~eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~el---g~~viei~~s~~~~ 216 (544)
+..+.|..+.+|+|-+...+.|.+--..... |.+. +++||+|..|+||+++++++-.++ |..++|++..+.
T Consensus 51 v~~~~~i~L~~l~Gvd~qk~~L~~NT~~F~~---G~pA-NnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl-- 124 (287)
T COG2607 51 VPDPDPIDLADLVGVDRQKEALVRNTEQFAE---GLPA-NNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDL-- 124 (287)
T ss_pred CCCCCCcCHHHHhCchHHHHHHHHHHHHHHc---CCcc-cceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHH--
Confidence 4567788999999999888888776666654 6665 899999999999999999999887 677888875431
Q ss_pred hhhhhhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHHHHHhcCCCcE
Q 009072 217 WQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPT 296 (544)
Q Consensus 217 ~~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~~~~~~~~pi 296 (544)
..+-.+++.++.. ..+.|||.||+..=.+..++..+..+|.-=++..+..+
T Consensus 125 ------------------~~Lp~l~~~Lr~~-----------~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NV 175 (287)
T COG2607 125 ------------------ATLPDLVELLRAR-----------PEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANV 175 (287)
T ss_pred ------------------hhHHHHHHHHhcC-----------CceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeE
Confidence 2344556666533 45789999998765555555544444443333333334
Q ss_pred EEEEccCCCCCCCCc----------cccchHHH---HHHHhhcCceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHH
Q 009072 297 AVVLTECGKADSVDS----------TAQSFEEL---QSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDL 363 (544)
Q Consensus 297 IiI~t~~~~~~~~d~----------~~~~l~~l---~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~l~~ 363 (544)
+|.+| .+..+.... ..+.-+.. -++-.|+ ...+.|.|++.++..+++...++..++.++++.++.
T Consensus 176 l~YAT-SNRRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRF-GLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~e~l~~ 253 (287)
T COG2607 176 LFYAT-SNRRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRF-GLWLSFYPCDQDEYLKIVDHYAKHFGLDISDEELHA 253 (287)
T ss_pred EEEEe-cCCcccccHhhhhCCCcccccChhHHHHHhhchhhhc-ceeecccCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 44444 333322110 01111111 1333565 558999999999999999999999999998776654
Q ss_pred HHH-----HcCCcHHHHHHHHHHhcc
Q 009072 364 VAQ-----ASGGDIRQAITSLQFSSL 384 (544)
Q Consensus 364 Ia~-----~s~GDiR~aIn~Lq~~~~ 384 (544)
=|. ..+..=|.|..-.+.++.
T Consensus 254 eAl~WAt~rg~RSGR~A~QF~~~~~g 279 (287)
T COG2607 254 EALQWATTRGGRSGRVAWQFIRDLAG 279 (287)
T ss_pred HHHHHHHhcCCCccHhHHHHHHHHHh
Confidence 432 234455666666666654
No 173
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=99.01 E-value=2.1e-08 Score=97.11 Aligned_cols=113 Identities=17% Similarity=0.214 Sum_probs=85.7
Q ss_pred CceEEEEecCCCCCchhHHHHHHHHHHHHHhcCCCcEEEEEccCCCCCC---CCccccchHHHHHHHhhcCceeEEecCC
Q 009072 260 SSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPTAVVLTECGKADS---VDSTAQSFEELQSILVDAGARKVALNPI 336 (544)
Q Consensus 260 ~~~vIlIDEid~l~~~~~~~~~~~~L~~~~~~~~~piIiI~t~~~~~~~---~d~~~~~l~~l~~ll~r~~~~~I~f~p~ 336 (544)
-|.|+||||++.++-. ....|.+.++++-.|+|+++++...... .|...+. --...+|.| ..+|+-.++
T Consensus 296 vPGVLFIDEVhMLDiE-----cFTyL~kalES~iaPivifAsNrG~~~irGt~d~~sPh-Gip~dllDR--l~Iirt~~y 367 (456)
T KOG1942|consen 296 VPGVLFIDEVHMLDIE-----CFTYLHKALESPIAPIVIFASNRGMCTIRGTEDILSPH-GIPPDLLDR--LLIIRTLPY 367 (456)
T ss_pred cCcceEeeehhhhhhH-----HHHHHHHHhcCCCCceEEEecCCcceeecCCcCCCCCC-CCCHHHhhh--eeEEeeccC
Confidence 4779999999987532 2245778888888899999988664322 1111111 111456665 788999999
Q ss_pred CHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH-cCCcHHHHHHHHH
Q 009072 337 TNGSIKRTLSKICRQEQYSLSTEQIDLVAQA-SGGDIRQAITSLQ 380 (544)
Q Consensus 337 s~~~i~~~L~~i~~~e~~~i~~~~l~~Ia~~-s~GDiR~aIn~Lq 380 (544)
++++++++|...++.|++.+++++++.+++. +.-.+|.|+..|-
T Consensus 368 ~~~e~r~Ii~~Ra~~E~l~~~e~a~~~l~~~gt~tsLRy~vqLl~ 412 (456)
T KOG1942|consen 368 DEEEIRQIIKIRAQVEGLQVEEEALDLLAEIGTSTSLRYAVQLLT 412 (456)
T ss_pred CHHHHHHHHHHHHhhhcceecHHHHHHHHhhccchhHHHHHHhcC
Confidence 9999999999999999999999999999986 4567999988775
No 174
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.01 E-value=8e-09 Score=108.03 Aligned_cols=115 Identities=18% Similarity=0.351 Sum_probs=72.0
Q ss_pred cchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhCCe----EEE-EeCCCchhhhhhhh
Q 009072 148 LEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGAR----LYE-WDTPTPTIWQEYMH 222 (544)
Q Consensus 148 ~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~----vie-i~~s~~~~~~e~l~ 222 (544)
++++.+.+..++.+...+.. .+.++|+||||||||++|+.+|..+... .+. +.......+...+.
T Consensus 174 l~d~~i~e~~le~l~~~L~~----------~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~ 243 (459)
T PRK11331 174 LNDLFIPETTIETILKRLTI----------KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQ 243 (459)
T ss_pred hhcccCCHHHHHHHHHHHhc----------CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhc
Confidence 57788888888888777653 1689999999999999999999988532 111 12222223333332
Q ss_pred cc-ccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHH
Q 009072 223 NC-KTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLR 282 (544)
Q Consensus 223 ~~-~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~ 282 (544)
.. ..+.++.-....|.+++..+.... .++.++||||+++......+..+.
T Consensus 244 G~rP~~vgy~~~~G~f~~~~~~A~~~p----------~~~~vliIDEINRani~kiFGel~ 294 (459)
T PRK11331 244 GYRPNGVGFRRKDGIFYNFCQQAKEQP----------EKKYVFIIDEINRANLSKVFGEVM 294 (459)
T ss_pred ccCCCCCCeEecCchHHHHHHHHHhcc----------cCCcEEEEehhhccCHHHhhhhhh
Confidence 11 122333322235667777765332 357899999999876544444443
No 175
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.00 E-value=2.7e-08 Score=114.26 Aligned_cols=209 Identities=13% Similarity=0.187 Sum_probs=118.9
Q ss_pred chhccChHHHHHHHHHHHHhhcCCC-CCCCccEEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeCCCchhh--hhhhh
Q 009072 149 EELAVQRKKVEEVRAWFEERLGDSK-DKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTPTPTIW--QEYMH 222 (544)
Q Consensus 149 ~dLv~~~~~~~~l~~wL~~~~~~~~-g~~~~~~lLL~GPpG~GKTtla~~lA~el---g~~viei~~s~~~~~--~e~l~ 222 (544)
..++|++..+..|...+........ ...|...+||+||||+|||++|++||+.+ +..++.++.+..... ...+.
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~~~~Li 647 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHSVSRLV 647 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhhHHHHh
Confidence 4588999999999999987543111 11122479999999999999999999987 345777766542110 00010
Q ss_pred ccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHHHHHhcCC---------
Q 009072 223 NCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTH--------- 293 (544)
Q Consensus 223 ~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~~~~~~~--------- 293 (544)
. ...+|..... ..++..+-+. .+..||+|||++.+.. .+++.|.++++.+.
T Consensus 648 G--~~pgy~g~~~--~g~l~~~v~~-----------~p~~vLllDEieka~~-----~v~~~Ll~ile~g~l~d~~gr~v 707 (857)
T PRK10865 648 G--APPGYVGYEE--GGYLTEAVRR-----------RPYSVILLDEVEKAHP-----DVFNILLQVLDDGRLTDGQGRTV 707 (857)
T ss_pred C--CCCcccccch--hHHHHHHHHh-----------CCCCeEEEeehhhCCH-----HHHHHHHHHHhhCceecCCceEE
Confidence 0 0011111000 0112222111 1246999999998764 24456666665432
Q ss_pred ---CcEEEEEccCCCCCCCC----ccccchH----------HHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHHh----
Q 009072 294 ---IPTAVVLTECGKADSVD----STAQSFE----------ELQSILVDAGARKVALNPITNGSIKRTLSKICRQE---- 352 (544)
Q Consensus 294 ---~piIiI~t~~~~~~~~d----~~~~~l~----------~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e---- 352 (544)
..+|+++++.......+ .....+. ..+++++|. ..++.|.|++.+++.+++...+...
T Consensus 708 d~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELlnRl-d~iivF~PL~~edl~~Iv~~~L~~l~~rl 786 (857)
T PRK10865 708 DFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRI-DEVVVFHPLGEQHIASIAQIQLQRLYKRL 786 (857)
T ss_pred eecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHHhC-CeeEecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 12344444432111000 0000000 013566663 4789999999999999888776541
Q ss_pred ---C--CCCCHHHHHHHHHHcC----C--cHHHHHHH
Q 009072 353 ---Q--YSLSTEQIDLVAQASG----G--DIRQAITS 378 (544)
Q Consensus 353 ---~--~~i~~~~l~~Ia~~s~----G--DiR~aIn~ 378 (544)
+ +.+++++++.|++..- | .+|++|..
T Consensus 787 ~~~gi~l~is~~al~~L~~~gy~~~~GARpL~r~I~~ 823 (857)
T PRK10865 787 EERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQQ 823 (857)
T ss_pred HhCCCcCcCCHHHHHHHHHcCCCccCChHHHHHHHHH
Confidence 3 4579999999998632 3 45555543
No 176
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.97 E-value=1.1e-08 Score=104.54 Aligned_cols=146 Identities=17% Similarity=0.205 Sum_probs=85.0
Q ss_pred CCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEE-eCCCc-h-hhhh---h----hhccc-------cCcc-cccchH
Q 009072 174 DKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEW-DTPTP-T-IWQE---Y----MHNCK-------TGLE-YTSKLD 235 (544)
Q Consensus 174 g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei-~~s~~-~-~~~e---~----l~~~~-------~g~~-~~s~~~ 235 (544)
++.+ +.+||+||+|+|||++|+.+|+.+.+.--.- ..+.. + .... . +.... .|.. ..-..+
T Consensus 18 ~r~~-hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id 96 (325)
T PRK08699 18 ERRP-NAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKID 96 (325)
T ss_pred CCcc-eEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHH
Confidence 5555 7899999999999999999999986531000 00110 0 0000 0 00000 0100 012357
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHHHHHhcCCCcE-EEEEccCCCCCCCCcccc
Q 009072 236 EFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPT-AVVLTECGKADSVDSTAQ 314 (544)
Q Consensus 236 ~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~~~~~~~~pi-IiI~t~~~~~~~~d~~~~ 314 (544)
.++++.+.+...+ ..+..+|+|||+++.++... .+.|++.+++..... +++++.
T Consensus 97 ~iR~l~~~~~~~p--------~~~~~kV~iiEp~~~Ld~~a-----~naLLk~LEep~~~~~~Ilvth------------ 151 (325)
T PRK08699 97 AVREIIDNVYLTS--------VRGGLRVILIHPAESMNLQA-----ANSLLKVLEEPPPQVVFLLVSH------------ 151 (325)
T ss_pred HHHHHHHHHhhCc--------ccCCceEEEEechhhCCHHH-----HHHHHHHHHhCcCCCEEEEEeC------------
Confidence 7777776664322 12457799999999997643 245666666653323 444433
Q ss_pred chHH-HHHHHhhcCceeEEecCCCHHHHHHHHHH
Q 009072 315 SFEE-LQSILVDAGARKVALNPITNGSIKRTLSK 347 (544)
Q Consensus 315 ~l~~-l~~ll~r~~~~~I~f~p~s~~~i~~~L~~ 347 (544)
.... +..+.+ ||..+.|.|++.+++...|..
T Consensus 152 ~~~~ll~ti~S--Rc~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 152 AADKVLPTIKS--RCRKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred ChHhChHHHHH--HhhhhcCCCCCHHHHHHHHHh
Confidence 1112 233344 499999999999999999864
No 177
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=98.92 E-value=1.2e-07 Score=95.56 Aligned_cols=167 Identities=15% Similarity=0.109 Sum_probs=105.6
Q ss_pred CCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeE----EEEeCCCchhhhhhhhccccCcccccchHHHHHHHHHHHhhcC
Q 009072 174 DKFSTNVLVITGQAGVGKTATVRQIASHLGARL----YEWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGS 249 (544)
Q Consensus 174 g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~v----iei~~s~~~~~~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~ 249 (544)
|+.. +..||+|+.|.||+++++.+|+.+.+.- -.-+.|+.-.+ +. ..| ..-..+.+++..+.+...+.
T Consensus 15 ~~l~-haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~---~d--~~g--~~i~vd~Ir~l~~~~~~~~~ 86 (299)
T PRK07132 15 NKIS-HSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIIL---FD--IFD--KDLSKSEFLSAINKLYFSSF 86 (299)
T ss_pred CCCC-eEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEE---ec--cCC--CcCCHHHHHHHHHHhccCCc
Confidence 5555 8999999999999999999999984421 00011110000 00 001 11123566666665532210
Q ss_pred CCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHHHHHhcCCCcEEEEEccCCCCCCCCccccchHHHHHHHhhcCce
Q 009072 250 TSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGAR 329 (544)
Q Consensus 250 l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~~~~~~~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~ 329 (544)
..+.++|++||+++.+... ..++|++++++.+..+++|..+... -..++++.+ ||.
T Consensus 87 -------~~~~~KvvII~~~e~m~~~-----a~NaLLK~LEEPp~~t~~il~~~~~----------~kll~TI~S--Rc~ 142 (299)
T PRK07132 87 -------VQSQKKILIIKNIEKTSNS-----LLNALLKTIEEPPKDTYFLLTTKNI----------NKVLPTIVS--RCQ 142 (299)
T ss_pred -------ccCCceEEEEecccccCHH-----HHHHHHHHhhCCCCCeEEEEEeCCh----------HhChHHHHh--CeE
Confidence 1135789999999998643 3467889999877666666543211 112344545 499
Q ss_pred eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHH
Q 009072 330 KVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIRQAITSL 379 (544)
Q Consensus 330 ~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~l~~Ia~~s~GDiR~aIn~L 379 (544)
.+.|.|++..++...|... + ++++....++..++| +..|+..+
T Consensus 143 ~~~f~~l~~~~l~~~l~~~----~--~~~~~a~~~a~~~~~-~~~a~~~~ 185 (299)
T PRK07132 143 VFNVKEPDQQKILAKLLSK----N--KEKEYNWFYAYIFSN-FEQAEKYI 185 (299)
T ss_pred EEECCCCCHHHHHHHHHHc----C--CChhHHHHHHHHcCC-HHHHHHHH
Confidence 9999999999999888742 3 667777777777764 88888764
No 178
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=98.92 E-value=2.3e-08 Score=97.59 Aligned_cols=170 Identities=14% Similarity=0.145 Sum_probs=103.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCCch--hhhhhhhccccCc------ccccchHHHHHHHHHHHhhcC
Q 009072 178 TNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPT--IWQEYMHNCKTGL------EYTSKLDEFENFVERIRRYGS 249 (544)
Q Consensus 178 ~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~~~--~~~e~l~~~~~g~------~~~s~~~~~~~~l~~~~~~~~ 249 (544)
++.+||+||+|+||..+|..+|+.+-+.-- +.+... ............+ ...-..++++++.+.....+
T Consensus 7 ~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~--~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s- 83 (261)
T PRK05818 7 THPLLLIERKGSFLKPFLYEYLTSIVCTKA--NGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPS- 83 (261)
T ss_pred CcceeeeCCCCCcHHHHHHHHHHHHcCCCC--CCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCc-
Confidence 389999999999999999999998755310 111110 0000000000000 00122356666665543111
Q ss_pred CCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHHHHHhcCCCcEEEEEccCCCCCCCCccccchHHHHHHHhhcCce
Q 009072 250 TSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGAR 329 (544)
Q Consensus 250 l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~~~~~~~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~ 329 (544)
. ..+..+|++|+++|.|.... .++|++.+++.+..++||..+... -..++.+.+| |+
T Consensus 84 ----~--e~~~~KV~II~~ae~m~~~A-----aNaLLK~LEEPp~~t~fiLit~~~----------~~lLpTI~SR--Cq 140 (261)
T PRK05818 84 ----V--ESNGKKIYIIYGIEKLNKQS-----ANSLLKLIEEPPKNTYGIFTTRNE----------NNILNTILSR--CV 140 (261)
T ss_pred ----h--hcCCCEEEEeccHhhhCHHH-----HHHHHHhhcCCCCCeEEEEEECCh----------HhCchHhhhh--ee
Confidence 0 11346899999999987543 478999999987777666654321 1223455554 99
Q ss_pred eEEecCC----------CHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHh
Q 009072 330 KVALNPI----------TNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIRQAITSLQFS 382 (544)
Q Consensus 330 ~I~f~p~----------s~~~i~~~L~~i~~~e~~~i~~~~l~~Ia~~s~GDiR~aIn~Lq~~ 382 (544)
.+.|+++ ++.++.+.|... ..+++ .++..++|++..|+..++.+
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~i~~~L~~~-----~~~d~----~i~~~a~g~~~~a~~l~~~l 194 (261)
T PRK05818 141 QYVVLSKEKKVPFKVESNDRYFQYILLSF-----YSVDE----QLQAYNNGSFSKLKNIIETL 194 (261)
T ss_pred eeecCChhhhcccccccChHHHHHHHHHc-----cCccH----HHHHHcCCCHHHHHHHHHHH
Confidence 9999888 555555554432 12444 67788999999999999965
No 179
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=98.88 E-value=9.4e-08 Score=95.54 Aligned_cols=184 Identities=15% Similarity=0.147 Sum_probs=106.9
Q ss_pred ChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCCc-h-hhhhhhhccccC----
Q 009072 154 QRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTP-T-IWQEYMHNCKTG---- 227 (544)
Q Consensus 154 ~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~~-~-~~~e~l~~~~~g---- 227 (544)
++..++.+...+.. |+.+ +.+||+|| .||+++|+.+|+.+-+.-..-..++. + ............
T Consensus 7 q~~~~~~L~~~~~~------~rl~-hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i 77 (290)
T PRK07276 7 QPKVFQRFQTILEQ------DRLN-HAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVI 77 (290)
T ss_pred HHHHHHHHHHHHHc------CCcc-eeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeee
Confidence 45566666666654 6665 89999996 68999999999987553110000110 0 000000000000
Q ss_pred --cccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHHHHHhcCCCcEEEEEccCCC
Q 009072 228 --LEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPTAVVLTECGK 305 (544)
Q Consensus 228 --~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~~~~~~~~piIiI~t~~~~ 305 (544)
.+..-..+.++++...+...+ ..+..+|+|||++|.|... ..++|++.+++.+...++|..+.+.
T Consensus 78 ~p~~~~I~idqIR~l~~~~~~~p--------~~~~~kV~II~~ad~m~~~-----AaNaLLKtLEEPp~~t~~iL~t~~~ 144 (290)
T PRK07276 78 EPQGQVIKTDTIRELVKNFSQSG--------YEGKQQVFIIKDADKMHVN-----AANSLLKVIEEPQSEIYIFLLTNDE 144 (290)
T ss_pred cCCCCcCCHHHHHHHHHHHhhCc--------ccCCcEEEEeehhhhcCHH-----HHHHHHHHhcCCCCCeEEEEEECCh
Confidence 011123466777666554322 1245789999999999754 3478999999987656655544221
Q ss_pred CCCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHH
Q 009072 306 ADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIRQAITSL 379 (544)
Q Consensus 306 ~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~l~~Ia~~s~GDiR~aIn~L 379 (544)
-..++.+.+| |..|.|.+ +.+.+..+|. .+| ++.+....++.. .|++..|+..+
T Consensus 145 ----------~~lLpTI~SR--cq~i~f~~-~~~~~~~~L~----~~g--~~~~~a~~la~~-~~s~~~A~~l~ 198 (290)
T PRK07276 145 ----------NKVLPTIKSR--TQIFHFPK-NEAYLIQLLE----QKG--LLKTQAELLAKL-AQSTSEAEKLA 198 (290)
T ss_pred ----------hhCchHHHHc--ceeeeCCC-cHHHHHHHHH----HcC--CChHHHHHHHHH-CCCHHHHHHHh
Confidence 1223455554 99999976 6666666554 456 344444445544 46788888766
No 180
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=5.7e-08 Score=104.09 Aligned_cols=161 Identities=19% Similarity=0.263 Sum_probs=100.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhCC----eEEEEeCCCchhhhhhhhccccCcccccchHHHHHHHHHHHhhcCCCC
Q 009072 177 STNVLVITGQAGVGKTATVRQIASHLGA----RLYEWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSP 252 (544)
Q Consensus 177 ~~~~lLL~GPpG~GKTtla~~lA~elg~----~viei~~s~~~~~~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~ 252 (544)
.+.++||+||+|||||.+|+++++++.. .+..+.++. ..+.......+.+..++..+-.|
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~-----------l~~~~~e~iQk~l~~vfse~~~~----- 493 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCST-----------LDGSSLEKIQKFLNNVFSEALWY----- 493 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechh-----------ccchhHHHHHHHHHHHHHHHHhh-----
Confidence 3478999999999999999999999753 333334332 22222222223344444444444
Q ss_pred CCCCCCCCceEEEEecCCCCCch-------h--HHHHHHHHHHHHHh---cCCCcEEEEEccCCCCCCCCccccchHHHH
Q 009072 253 SIPGESKSSAILLIDDLPVTNGR-------T--AFERLRQCLLLLVR---STHIPTAVVLTECGKADSVDSTAQSFEELQ 320 (544)
Q Consensus 253 ~~~~~~~~~~vIlIDEid~l~~~-------~--~~~~~~~~L~~~~~---~~~~piIiI~t~~~~~~~~d~~~~~l~~l~ 320 (544)
.|.||++|++|.+.+. . ...++...|.+++. +.+..+.+|++.. .+..+.
T Consensus 494 -------~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~q-----------e~qtl~ 555 (952)
T KOG0735|consen 494 -------APSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQ-----------ELQTLN 555 (952)
T ss_pred -------CCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEech-----------hhhhcC
Confidence 3889999999987431 1 12233333333332 1222356666542 233344
Q ss_pred HHHhhcC--ceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCc
Q 009072 321 SILVDAG--ARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGD 371 (544)
Q Consensus 321 ~ll~r~~--~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~l~~Ia~~s~GD 371 (544)
++|..++ -.++.+++|..++..++|..++.+.......+.++.++..+.|-
T Consensus 556 ~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~TEGy 608 (952)
T KOG0735|consen 556 PLLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNLSDITMDDLDFLSVKTEGY 608 (952)
T ss_pred hhhcCccceEEEEecCCcchhHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCc
Confidence 4443322 34678999999999999999998877667778888888888884
No 181
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.83 E-value=4.6e-08 Score=87.04 Aligned_cols=53 Identities=30% Similarity=0.435 Sum_probs=40.0
Q ss_pred cChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeCCC
Q 009072 153 VQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTPT 213 (544)
Q Consensus 153 ~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~el---g~~viei~~s~ 213 (544)
+++..+..+..++... ..+.++++||||||||++++.+++++ +..++.++...
T Consensus 2 ~~~~~~~~i~~~~~~~--------~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~ 57 (151)
T cd00009 2 GQEEAIEALREALELP--------PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASD 57 (151)
T ss_pred chHHHHHHHHHHHhCC--------CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhh
Confidence 4455566666655431 22689999999999999999999998 88888777654
No 182
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.80 E-value=2e-07 Score=102.32 Aligned_cols=217 Identities=12% Similarity=0.152 Sum_probs=128.4
Q ss_pred cccCCCCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeCCCchhh
Q 009072 141 EKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTPTPTIW 217 (544)
Q Consensus 141 eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~el---g~~viei~~s~~~~~ 217 (544)
.+++..+++.++|.....+++.+-++.... ....+||+|++||||+++|++|.... +.+++.+++......
T Consensus 188 ~~~~~~~~~~liG~s~~~~~~~~~~~~~a~------~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~~ 261 (534)
T TIGR01817 188 ARRRSGKEDGIIGKSPAMRQVVDQARVVAR------SNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSET 261 (534)
T ss_pred cccccCccCceEECCHHHHHHHHHHHHHhC------cCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCHH
Confidence 345566889999999999999988877542 11569999999999999999999874 568999998653210
Q ss_pred hhhhhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHHHHHhcCCC---
Q 009072 218 QEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHI--- 294 (544)
Q Consensus 218 ~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~~~~~~~~--- 294 (544)
.+.....|.... . |........ .. -......+|+|||++.++.. ++..|..+++....
T Consensus 262 --~~~~~lfg~~~~----~---~~~~~~~~~----g~-~~~a~~GtL~ldei~~L~~~-----~Q~~Ll~~l~~~~~~~~ 322 (534)
T TIGR01817 262 --LLESELFGHEKG----A---FTGAIAQRK----GR-FELADGGTLFLDEIGEISPA-----FQAKLLRVLQEGEFERV 322 (534)
T ss_pred --HHHHHHcCCCCC----c---cCCCCcCCC----Cc-ccccCCCeEEEechhhCCHH-----HHHHHHHHHhcCcEEEC
Confidence 000000010000 0 000000000 00 00123458999999998753 33445566654321
Q ss_pred --------cEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCC--HHHHHHHHHHHHHH----hC--CCCCH
Q 009072 295 --------PTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPIT--NGSIKRTLSKICRQ----EQ--YSLST 358 (544)
Q Consensus 295 --------piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s--~~~i~~~L~~i~~~----e~--~~i~~ 358 (544)
.+-+|++++..... ......+ ...+..+.....|.++|+. .+++..++...+.+ .+ +.+++
T Consensus 323 ~~~~~~~~~~riI~~s~~~l~~-~~~~~~f--~~~L~~rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~ 399 (534)
T TIGR01817 323 GGNRTLKVDVRLVAATNRDLEE-AVAKGEF--RADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITP 399 (534)
T ss_pred CCCceEeecEEEEEeCCCCHHH-HHHcCCC--CHHHHHHhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCH
Confidence 13344443211000 0000001 1234445446678888886 56676666555543 22 56899
Q ss_pred HHHHHHHHHc-CCcHHHHHHHHHHhccC
Q 009072 359 EQIDLVAQAS-GGDIRQAITSLQFSSLK 385 (544)
Q Consensus 359 ~~l~~Ia~~s-~GDiR~aIn~Lq~~~~~ 385 (544)
++++.|.... .||+|..-|.++.++..
T Consensus 400 ~a~~~L~~~~WPGNvrEL~~v~~~a~~~ 427 (534)
T TIGR01817 400 SAIRVLMSCKWPGNVRELENCLERTATL 427 (534)
T ss_pred HHHHHHHhCCCCChHHHHHHHHHHHHHh
Confidence 9999999885 89999999999988754
No 183
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=7.5e-08 Score=104.09 Aligned_cols=188 Identities=21% Similarity=0.206 Sum_probs=114.4
Q ss_pred ccChHHHHHHHHHHHHhhcCC-CCCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCCchhhhhhhhccccCccc
Q 009072 152 AVQRKKVEEVRAWFEERLGDS-KDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIWQEYMHNCKTGLEY 230 (544)
Q Consensus 152 v~~~~~~~~l~~wL~~~~~~~-~g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~~~~~~e~l~~~~~g~~~ 230 (544)
.+.+.++.++...+....... .+..-...+||+|+|||||||+++++|+++|.+++++.+... +.+ ..+
T Consensus 404 ~~~~~~~~~l~~vl~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el------~~~-s~~--- 473 (953)
T KOG0736|consen 404 PGLEAKVLELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYEL------VAE-SAS--- 473 (953)
T ss_pred ccchHHHHHHHHHhCcccCcchhccccceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHH------hhc-ccc---
Confidence 345555656666665433211 011123689999999999999999999999999999876431 111 111
Q ss_pred ccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCch---hHHHHHHHHHHHHHh-----cCCCcEEEEEcc
Q 009072 231 TSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGR---TAFERLRQCLLLLVR-----STHIPTAVVLTE 302 (544)
Q Consensus 231 ~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~---~~~~~~~~~L~~~~~-----~~~~piIiI~t~ 302 (544)
.....+..++.+++.+ .|.||++-.+|.+... ..-.+++..++..+. ....+.|+|++.
T Consensus 474 -~~etkl~~~f~~a~~~------------~pavifl~~~dvl~id~dgged~rl~~~i~~~ls~e~~~~~~~~~ivv~t~ 540 (953)
T KOG0736|consen 474 -HTETKLQAIFSRARRC------------SPAVLFLRNLDVLGIDQDGGEDARLLKVIRHLLSNEDFKFSCPPVIVVATT 540 (953)
T ss_pred -hhHHHHHHHHHHHhhc------------CceEEEEeccceeeecCCCchhHHHHHHHHHHHhcccccCCCCceEEEEec
Confidence 1224567788888765 3889999999876321 112345555555544 133456666654
Q ss_pred CCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH
Q 009072 303 CGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIRQ 374 (544)
Q Consensus 303 ~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~l~~Ia~~s~GDiR~ 374 (544)
... +.+++-+++.....|.+..++.++...+|+..+....+. .+..++.++..+.|-.+.
T Consensus 541 ~s~-----------~~lp~~i~~~f~~ei~~~~lse~qRl~iLq~y~~~~~~n-~~v~~k~~a~~t~gfs~~ 600 (953)
T KOG0736|consen 541 SSI-----------EDLPADIQSLFLHEIEVPALSEEQRLEILQWYLNHLPLN-QDVNLKQLARKTSGFSFG 600 (953)
T ss_pred ccc-----------ccCCHHHHHhhhhhccCCCCCHHHHHHHHHHHHhccccc-hHHHHHHHHHhcCCCCHH
Confidence 321 222232333235689999999999999999887654321 233456666666654443
No 184
>PHA02244 ATPase-like protein
Probab=98.76 E-value=4.3e-07 Score=92.79 Aligned_cols=33 Identities=30% Similarity=0.425 Sum_probs=30.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeC
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLGARLYEWDT 211 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg~~viei~~ 211 (544)
..++|+||||||||++|+++|+.++.+++.++.
T Consensus 120 ~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~ 152 (383)
T PHA02244 120 IPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNA 152 (383)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhCCCEEEEec
Confidence 469999999999999999999999999998874
No 185
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.75 E-value=7.5e-08 Score=93.64 Aligned_cols=118 Identities=19% Similarity=0.272 Sum_probs=86.9
Q ss_pred CceEEEEecCCCCCchhHHHHHHHHHHHHHhcCCCcEEEEEccCCCCCCCCccccchH-HHHHHHhhcCceeEEecCCCH
Q 009072 260 SSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPTAVVLTECGKADSVDSTAQSFE-ELQSILVDAGARKVALNPITN 338 (544)
Q Consensus 260 ~~~vIlIDEid~l~~~~~~~~~~~~L~~~~~~~~~piIiI~t~~~~~~~~d~~~~~l~-~l~~ll~r~~~~~I~f~p~s~ 338 (544)
-|.|+||||++.++-. - ...|...++..-.|+|+++++...........++.. -...+|.| ..+|.-.|++.
T Consensus 288 vpGVLFIDEvHMLDIE----c-FsFlNrAlE~d~~PiiimaTNrgit~iRGTn~~SphGiP~D~lDR--~lII~t~py~~ 360 (454)
T KOG2680|consen 288 VPGVLFIDEVHMLDIE----C-FSFLNRALENDMAPIIIMATNRGITRIRGTNYRSPHGIPIDLLDR--MLIISTQPYTE 360 (454)
T ss_pred ccceEEEeeehhhhhH----H-HHHHHHHhhhccCcEEEEEcCCceEEeecCCCCCCCCCcHHHhhh--hheeecccCcH
Confidence 4679999999987542 1 235677788888899999988654322111111111 11345565 67899999999
Q ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHc-CCcHHHHHHHHHHhcc
Q 009072 339 GSIKRTLSKICRQEQYSLSTEQIDLVAQAS-GGDIRQAITSLQFSSL 384 (544)
Q Consensus 339 ~~i~~~L~~i~~~e~~~i~~~~l~~Ia~~s-~GDiR~aIn~Lq~~~~ 384 (544)
++++++|...|..|.+.+++++++.|.... .-.+|.||+.+-...+
T Consensus 361 ~d~~~IL~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~ 407 (454)
T KOG2680|consen 361 EDIKKILRIRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAASL 407 (454)
T ss_pred HHHHHHHHhhhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 999999999999999999999999998763 4679999998765543
No 186
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.74 E-value=7.2e-07 Score=88.63 Aligned_cols=184 Identities=16% Similarity=0.194 Sum_probs=106.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh---------CCeEEEEeCCCch----hhhhhhhccccCcccccchHHHHH-HHHHH
Q 009072 179 NVLVITGQAGVGKTATVRQIASHL---------GARLYEWDTPTPT----IWQEYMHNCKTGLEYTSKLDEFEN-FVERI 244 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~el---------g~~viei~~s~~~----~~~e~l~~~~~g~~~~s~~~~~~~-~l~~~ 244 (544)
+.+||+|++|.|||++++.+++.. .++|+.+.+|... .|...+................+. .+.-.
T Consensus 62 p~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~ll 141 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRLL 141 (302)
T ss_pred CceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHH
Confidence 689999999999999999999875 2467777665432 232223222111111112222222 22222
Q ss_pred HhhcCCCCCCCCCCCCceEEEEecCCCC-Cch-hHHHHHHHHHHHHHhcCCCcEEEEEccCCCCCCCCccccchHHHHHH
Q 009072 245 RRYGSTSPSIPGESKSSAILLIDDLPVT-NGR-TAFERLRQCLLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSI 322 (544)
Q Consensus 245 ~~~~~l~~~~~~~~~~~~vIlIDEid~l-~~~-~~~~~~~~~L~~~~~~~~~piIiI~t~~~~~~~~d~~~~~l~~l~~l 322 (544)
+.. ...+|+|||++++ .+. ...+.+.+.|..+.+.-+.|+|++-+.. . ...+....++
T Consensus 142 r~~------------~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~-------A-~~al~~D~QL 201 (302)
T PF05621_consen 142 RRL------------GVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTRE-------A-YRALRTDPQL 201 (302)
T ss_pred HHc------------CCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHH-------H-HHHhccCHHH
Confidence 222 3679999999985 332 2344567888888888889998775431 1 1122222445
Q ss_pred HhhcCceeEEecCCCH-HHHHHHHHHHHHHhCC----C-CCHHHHHHHHHHcCCcHHHHHHHHHHhcc
Q 009072 323 LVDAGARKVALNPITN-GSIKRTLSKICRQEQY----S-LSTEQIDLVAQASGGDIRQAITSLQFSSL 384 (544)
Q Consensus 323 l~r~~~~~I~f~p~s~-~~i~~~L~~i~~~e~~----~-i~~~~l~~Ia~~s~GDiR~aIn~Lq~~~~ 384 (544)
-+| ...+.+++-.. ++..+.|...-..-.+ . .+++....|...|+|-|-...+.|..++.
T Consensus 202 a~R--F~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~~ll~~aA~ 267 (302)
T PF05621_consen 202 ASR--FEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELSRLLNAAAI 267 (302)
T ss_pred Hhc--cCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 455 45566655433 3344444433222111 1 34677789999999988887777776664
No 187
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=98.73 E-value=3.5e-07 Score=93.56 Aligned_cols=51 Identities=22% Similarity=0.314 Sum_probs=41.7
Q ss_pred CCCCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 009072 144 KPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL 202 (544)
Q Consensus 144 ~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~el 202 (544)
.|..|++++|++..++.+.-.+-.. | .+++||+||||+||||+|+++|+-+
T Consensus 3 ~~~~f~~i~Gq~~~~~~l~~~~~~~-----~---~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 3 KPFPFSAIVGQEEMKQAMVLTAIDP-----G---IGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHhcc-----C---CCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 5788999999999888776433221 1 1589999999999999999999998
No 188
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.73 E-value=1.5e-07 Score=82.83 Aligned_cols=86 Identities=19% Similarity=0.155 Sum_probs=52.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCe---EEEEeCCCchhhhhhh---hccccCcccccchHHHHHHHHHHHhhcCCCC
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLGAR---LYEWDTPTPTIWQEYM---HNCKTGLEYTSKLDEFENFVERIRRYGSTSP 252 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg~~---viei~~s~~~~~~e~l---~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~ 252 (544)
+.++|+|||||||||+++.+|..+... ++.++........... ...............++..+..+...
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 77 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKL----- 77 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhc-----
Confidence 689999999999999999999999775 6666654322100000 00001111122234445555555422
Q ss_pred CCCCCCCCceEEEEecCCCCCchh
Q 009072 253 SIPGESKSSAILLIDDLPVTNGRT 276 (544)
Q Consensus 253 ~~~~~~~~~~vIlIDEid~l~~~~ 276 (544)
.+.+|+|||++.+....
T Consensus 78 -------~~~viiiDei~~~~~~~ 94 (148)
T smart00382 78 -------KPDVLILDEITSLLDAE 94 (148)
T ss_pred -------CCCEEEEECCcccCCHH
Confidence 25799999999986643
No 189
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.72 E-value=7.3e-08 Score=94.32 Aligned_cols=67 Identities=19% Similarity=0.297 Sum_probs=46.4
Q ss_pred ccccCCCCcchhccChH----HHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeCC
Q 009072 140 AEKYKPRSLEELAVQRK----KVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTP 212 (544)
Q Consensus 140 ~eky~P~~~~dLv~~~~----~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~el---g~~viei~~s 212 (544)
.+.|++.+|+++..... .+..+..++.... +. ...++|+||||||||+++.++|+++ |..++.+..+
T Consensus 63 ~~~~~~~tFdnf~~~~~~q~~al~~a~~~~~~~~----~~--~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~ 136 (244)
T PRK07952 63 RPLHQNCSFENYRVECEGQMNALSKARQYVEEFD----GN--IASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVA 136 (244)
T ss_pred CccccCCccccccCCCchHHHHHHHHHHHHHhhc----cC--CceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHH
Confidence 45677778888764432 3445555554431 11 1579999999999999999999998 6777666543
No 190
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=98.68 E-value=2.6e-08 Score=92.38 Aligned_cols=103 Identities=17% Similarity=0.259 Sum_probs=62.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCC----eEEEEeCCCchhhhhhhhccccCcccccchHHHHHHHHHHHhhcCCCCCC
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLGA----RLYEWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSI 254 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg~----~viei~~s~~~~~~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~ 254 (544)
..+||.||+|||||.+|+++|+.+.. +++.++.+..... .... ..+...+.....+.
T Consensus 4 ~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~----------~~~~---~~~~~l~~~~~~~v------ 64 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEG----------DDVE---SSVSKLLGSPPGYV------ 64 (171)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSH----------HHCS---CHCHHHHHHTTCHH------
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhccccc----------chHH---hhhhhhhhccccee------
Confidence 68999999999999999999999996 8888887653220 0000 00111111111000
Q ss_pred CCCCCCceEEEEecCCCCCch-----h-HHHHHHHHHHHHHhcCC-----------CcEEEEEcc
Q 009072 255 PGESKSSAILLIDDLPVTNGR-----T-AFERLRQCLLLLVRSTH-----------IPTAVVLTE 302 (544)
Q Consensus 255 ~~~~~~~~vIlIDEid~l~~~-----~-~~~~~~~~L~~~~~~~~-----------~piIiI~t~ 302 (544)
......||++||||.+... + .-..+++.|+++++.+. ..+|||+|.
T Consensus 65 --~~~~~gVVllDEidKa~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Ts 127 (171)
T PF07724_consen 65 --GAEEGGVVLLDEIDKAHPSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTS 127 (171)
T ss_dssp --HHHHHTEEEEETGGGCSHTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEE
T ss_pred --eccchhhhhhHHHhhccccccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEec
Confidence 0011239999999987541 1 12257788898887643 146677665
No 191
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=98.68 E-value=7.2e-07 Score=91.66 Aligned_cols=206 Identities=13% Similarity=0.158 Sum_probs=117.3
Q ss_pred hccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeCCCchh--hhhhhhccc
Q 009072 151 LAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTPTPTI--WQEYMHNCK 225 (544)
Q Consensus 151 Lv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~el---g~~viei~~s~~~~--~~e~l~~~~ 225 (544)
|+|.....+++.+-+..... ....+||+|++||||+++|+++-... +.+++.+++..... +...+....
T Consensus 1 liG~S~~m~~~~~~~~~~a~------~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~lfG~~ 74 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAP------LDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFGHE 74 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhC------CCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHHhccc
Confidence 35666667777776666532 11569999999999999999997654 46899999864321 000000000
Q ss_pred cCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHHHHHhcCC-----------C
Q 009072 226 TGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTH-----------I 294 (544)
Q Consensus 226 ~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~~~~~~~-----------~ 294 (544)
.|. +......-..+++ .....+|+|||++.++.. ++..|..+++... .
T Consensus 75 ~g~-~~ga~~~~~G~~~---------------~a~gGtL~Ldei~~L~~~-----~Q~~Ll~~l~~~~~~~~g~~~~~~~ 133 (329)
T TIGR02974 75 AGA-FTGAQKRHQGRFE---------------RADGGTLFLDELATASLL-----VQEKLLRVIEYGEFERVGGSQTLQV 133 (329)
T ss_pred ccc-ccCcccccCCchh---------------hCCCCEEEeCChHhCCHH-----HHHHHHHHHHcCcEEecCCCceecc
Confidence 000 0000000000010 122458999999998753 3344555655432 2
Q ss_pred cEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCC--HHHHHHHHHHHH----HHhC----CCCCHHHHHHH
Q 009072 295 PTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPIT--NGSIKRTLSKIC----RQEQ----YSLSTEQIDLV 364 (544)
Q Consensus 295 piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s--~~~i~~~L~~i~----~~e~----~~i~~~~l~~I 364 (544)
.+-+|++++.... .....-.....++.+.....|.++|+. .+++..++...+ .+.+ ..+++++++.|
T Consensus 134 ~~RiI~at~~~l~---~~~~~g~fr~dL~~rl~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L 210 (329)
T TIGR02974 134 DVRLVCATNADLP---ALAAEGRFRADLLDRLAFDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQL 210 (329)
T ss_pred ceEEEEechhhHH---HHhhcCchHHHHHHHhcchhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHH
Confidence 2344444321100 000000011345555556678888887 456666555544 3333 35899999999
Q ss_pred HHHc-CCcHHHHHHHHHHhccCC
Q 009072 365 AQAS-GGDIRQAITSLQFSSLKQ 386 (544)
Q Consensus 365 a~~s-~GDiR~aIn~Lq~~~~~~ 386 (544)
.... -||+|..-|.++.++...
T Consensus 211 ~~y~WPGNvrEL~n~i~~~~~~~ 233 (329)
T TIGR02974 211 LEYHWPGNVRELKNVVERSVYRH 233 (329)
T ss_pred HhCCCCchHHHHHHHHHHHHHhC
Confidence 9886 899999999998887643
No 192
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=98.67 E-value=4e-07 Score=93.85 Aligned_cols=53 Identities=21% Similarity=0.280 Sum_probs=43.3
Q ss_pred hccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCC
Q 009072 151 LAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPT 213 (544)
Q Consensus 151 Lv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~ 213 (544)
+++.+..+..+..++.. | +++||-||||||||++|+.+|+.++.+++.|....
T Consensus 26 ~~g~~~~~~~~l~a~~~------~----~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~ 78 (329)
T COG0714 26 VVGDEEVIELALLALLA------G----GHVLLEGPPGVGKTLLARALARALGLPFVRIQCTP 78 (329)
T ss_pred eeccHHHHHHHHHHHHc------C----CCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCC
Confidence 56677777666555543 2 68999999999999999999999999999998754
No 193
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.66 E-value=3.2e-08 Score=87.31 Aligned_cols=107 Identities=20% Similarity=0.317 Sum_probs=61.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh--------CCeEEEEeCCCchhhhhh----hhccccCccc-ccchHHHHHHHHHHH
Q 009072 179 NVLVITGQAGVGKTATVRQIASHL--------GARLYEWDTPTPTIWQEY----MHNCKTGLEY-TSKLDEFENFVERIR 245 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~el--------g~~viei~~s~~~~~~e~----l~~~~~g~~~-~s~~~~~~~~l~~~~ 245 (544)
+.++++||||+|||++++.+++++ ..+++.++.+....+... +......... ......+..+...+.
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l~ 84 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDALD 84 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHHH
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHHH
Confidence 689999999999999999999987 778887776654322211 1111111111 122233333444443
Q ss_pred hhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHHHHHhcCCCcEEEEEc
Q 009072 246 RYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPTAVVLT 301 (544)
Q Consensus 246 ~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~~~~~~~~piIiI~t 301 (544)
.. ...+|+|||+|.+. . ..+.+.|..+.+....++|++.+
T Consensus 85 ~~------------~~~~lviDe~~~l~-~---~~~l~~l~~l~~~~~~~vvl~G~ 124 (131)
T PF13401_consen 85 RR------------RVVLLVIDEADHLF-S---DEFLEFLRSLLNESNIKVVLVGT 124 (131)
T ss_dssp HC------------TEEEEEEETTHHHH-T---HHHHHHHHHHTCSCBEEEEEEES
T ss_pred hc------------CCeEEEEeChHhcC-C---HHHHHHHHHHHhCCCCeEEEEEC
Confidence 32 23599999999973 1 34456677777755555665554
No 194
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=5.8e-08 Score=100.90 Aligned_cols=187 Identities=14% Similarity=0.162 Sum_probs=99.5
Q ss_pred CCCCccEEEEEcCCCCcHHHHHHHHHHHhCCe-EEEEeCCCchhhhhhhhccccCcccccchHHHHHHHHHHHhhcCCCC
Q 009072 174 DKFSTNVLVITGQAGVGKTATVRQIASHLGAR-LYEWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSP 252 (544)
Q Consensus 174 g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~-viei~~s~~~~~~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~ 252 (544)
|...-+.+|||||||||||.+||.+.+.|+.. .-.+|.|.. .. ....++...+++.+..+...-.
T Consensus 252 Gi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeI--L~---------KYVGeSE~NvR~LFaDAEeE~r--- 317 (744)
T KOG0741|consen 252 GIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEI--LN---------KYVGESEENVRKLFADAEEEQR--- 317 (744)
T ss_pred CccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHH--HH---------HhhcccHHHHHHHHHhHHHHHH---
Confidence 44444789999999999999999999999764 233455431 11 1223455777888877653211
Q ss_pred CCCCCCCCceEEEEecCCCCCc--------hhHHHHHHHHHH-HHHhcCCCcEEEEEccCCCCCCCCccccchHHHHHHH
Q 009072 253 SIPGESKSSAILLIDDLPVTNG--------RTAFERLRQCLL-LLVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSIL 323 (544)
Q Consensus 253 ~~~~~~~~~~vIlIDEid~l~~--------~~~~~~~~~~L~-~~~~~~~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll 323 (544)
..|..+.-.|||+||+|.+-. .+....+.+-|+ ++..-.+...|++++-++ +.+.+.+.|
T Consensus 318 -~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLNNILVIGMTN----------R~DlIDEAL 386 (744)
T KOG0741|consen 318 -RLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLNNILVIGMTN----------RKDLIDEAL 386 (744)
T ss_pred -hhCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhhhcEEEEeccC----------chhhHHHHh
Confidence 112344568999999997621 112233443333 332222333445544332 334455555
Q ss_pred hhcCcee--EEecCCCHHHHHHHHHHHHH---HhCCCCCHHHHHHHHHH----cCCcHHHHHHHHHHhccC
Q 009072 324 VDAGARK--VALNPITNGSIKRTLSKICR---QEQYSLSTEQIDLVAQA----SGGDIRQAITSLQFSSLK 385 (544)
Q Consensus 324 ~r~~~~~--I~f~p~s~~~i~~~L~~i~~---~e~~~i~~~~l~~Ia~~----s~GDiR~aIn~Lq~~~~~ 385 (544)
-|++-.. ++...|+..-..++|+-.-. ..+.--++-.++.||.. |+-.|-..+...|-.+++
T Consensus 387 LRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVksA~S~A~n 457 (744)
T KOG0741|consen 387 LRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVKSAQSFAMN 457 (744)
T ss_pred cCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHHHHHHHHHH
Confidence 4544433 44556666655555443222 22222223335555554 333455555555655553
No 195
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.65 E-value=1e-07 Score=96.72 Aligned_cols=67 Identities=21% Similarity=0.275 Sum_probs=45.0
Q ss_pred cCCCCcchhccCh----HHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeCCC
Q 009072 143 YKPRSLEELAVQR----KKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTPT 213 (544)
Q Consensus 143 y~P~~~~dLv~~~----~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~el---g~~viei~~s~ 213 (544)
+...+|+++.... ........|+..... +. ..+.++|+||+|+|||+++.++|+++ |+.+..+..++
T Consensus 121 ~~~atf~~~~~~~~~~~~~~~~~~~fi~~~~~---~~-~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~ 194 (306)
T PRK08939 121 LLQASLADIDLDDRDRLDALMAALDFLEAYPP---GE-KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPE 194 (306)
T ss_pred HhcCcHHHhcCCChHHHHHHHHHHHHHHHhhc---cC-CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHH
Confidence 3445666655433 334445566665432 21 22789999999999999999999997 77777666543
No 196
>PRK12377 putative replication protein; Provisional
Probab=98.61 E-value=4.2e-07 Score=89.21 Aligned_cols=52 Identities=19% Similarity=0.355 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeCCC
Q 009072 156 KKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTPT 213 (544)
Q Consensus 156 ~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~el---g~~viei~~s~ 213 (544)
..+.....++..+.. + ...++|+||||||||++|.++|+++ |..++.+..++
T Consensus 85 ~a~~~a~~~a~~~~~---~---~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~ 139 (248)
T PRK12377 85 YALSQAKSIADELMT---G---CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPD 139 (248)
T ss_pred HHHHHHHHHHHHHHh---c---CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHH
Confidence 345556666666532 1 1579999999999999999999987 66676665543
No 197
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=2e-07 Score=91.59 Aligned_cols=97 Identities=22% Similarity=0.331 Sum_probs=63.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCCchhhhhhhhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCC
Q 009072 178 TNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGE 257 (544)
Q Consensus 178 ~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~~~~~~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~ 257 (544)
..++||.||+|||||.+|+.||+.++.++..-.+... +..+|.. +..+.++.++-+.+.. +-.
T Consensus 97 KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtL-----------TEAGYVG--EDVENillkLlqaady----dV~ 159 (408)
T COG1219 97 KSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTL-----------TEAGYVG--EDVENILLKLLQAADY----DVE 159 (408)
T ss_pred eccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccch-----------hhccccc--hhHHHHHHHHHHHccc----CHH
Confidence 3589999999999999999999999999877666542 2233322 3344444443322211 001
Q ss_pred CCCceEEEEecCCCCCchh---------HHHHHHHHHHHHHhc
Q 009072 258 SKSSAILLIDDLPVTNGRT---------AFERLRQCLLLLVRS 291 (544)
Q Consensus 258 ~~~~~vIlIDEid~l~~~~---------~~~~~~~~L~~~~~~ 291 (544)
...+.||.|||+|.+...+ .-.+++++|+++++.
T Consensus 160 rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEG 202 (408)
T COG1219 160 RAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEG 202 (408)
T ss_pred HHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcC
Confidence 1235699999999873321 235688999999875
No 198
>PRK13531 regulatory ATPase RavA; Provisional
Probab=98.55 E-value=8.2e-07 Score=93.91 Aligned_cols=43 Identities=12% Similarity=0.144 Sum_probs=35.0
Q ss_pred hccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhC
Q 009072 151 LAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLG 203 (544)
Q Consensus 151 Lv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg 203 (544)
++|+++.++.+...+.. ..++||.||||||||++|+++++..+
T Consensus 22 i~gre~vI~lll~aala----------g~hVLL~GpPGTGKT~LAraLa~~~~ 64 (498)
T PRK13531 22 LYERSHAIRLCLLAALS----------GESVFLLGPPGIAKSLIARRLKFAFQ 64 (498)
T ss_pred ccCcHHHHHHHHHHHcc----------CCCEEEECCCChhHHHHHHHHHHHhc
Confidence 57788777777665533 26899999999999999999999864
No 199
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.54 E-value=9.1e-07 Score=99.35 Aligned_cols=207 Identities=13% Similarity=0.188 Sum_probs=123.0
Q ss_pred CCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeCCCchhhhhhhh
Q 009072 146 RSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTPTPTIWQEYMH 222 (544)
Q Consensus 146 ~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~el---g~~viei~~s~~~~~~e~l~ 222 (544)
.+|++++|.....+++.+.++..... ...+||+|++||||+++|+++.+.. +.+++.+|+..... +.+.
T Consensus 322 ~~~~~l~g~s~~~~~~~~~~~~~a~~------~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~--~~~~ 393 (638)
T PRK11388 322 HTFDHMPQDSPQMRRLIHFGRQAAKS------SFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPD--EALA 393 (638)
T ss_pred ccccceEECCHHHHHHHHHHHHHhCc------CCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCCh--HHHH
Confidence 46889999999888888888776431 1469999999999999999998875 46899998765321 0000
Q ss_pred ccccCcccccchHHHHHHHHHHHhhcCCCCCCCC--CCCCceEEEEecCCCCCchhHHHHHHHHHHHHHhcCCC------
Q 009072 223 NCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPG--ESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHI------ 294 (544)
Q Consensus 223 ~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~--~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~~~~~~~~------ 294 (544)
.+++.... ... .....| ......+|+|||++.+... ++..|..+++....
T Consensus 394 ---------------~elfg~~~-~~~-~~~~~g~~~~a~~GtL~ldei~~l~~~-----~Q~~Ll~~l~~~~~~~~~~~ 451 (638)
T PRK11388 394 ---------------EEFLGSDR-TDS-ENGRLSKFELAHGGTLFLEKVEYLSPE-----LQSALLQVLKTGVITRLDSR 451 (638)
T ss_pred ---------------HHhcCCCC-cCc-cCCCCCceeECCCCEEEEcChhhCCHH-----HHHHHHHHHhcCcEEeCCCC
Confidence 00110000 000 000000 0112458999999998753 33445555554321
Q ss_pred -----cEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHH--HHHHHHHHHHHHh------CCCCCHHHH
Q 009072 295 -----PTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNG--SIKRTLSKICRQE------QYSLSTEQI 361 (544)
Q Consensus 295 -----piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~--~i~~~L~~i~~~e------~~~i~~~~l 361 (544)
.+-+|+++....... .....+ -+.+..+.....|.++|+... ++..++...+.+. .+.++++++
T Consensus 452 ~~~~~~~riI~~t~~~l~~~-~~~~~f--~~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~ 528 (638)
T PRK11388 452 RLIPVDVRVIATTTADLAML-VEQNRF--SRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDAL 528 (638)
T ss_pred ceEEeeEEEEEeccCCHHHH-HhcCCC--hHHHhhhhceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHH
Confidence 233444432110000 000011 123444445677888888653 5665555555432 246899999
Q ss_pred HHHHHHc-CCcHHHHHHHHHHhccC
Q 009072 362 DLVAQAS-GGDIRQAITSLQFSSLK 385 (544)
Q Consensus 362 ~~Ia~~s-~GDiR~aIn~Lq~~~~~ 385 (544)
+.|.... .||+|..-|.++.++..
T Consensus 529 ~~L~~y~WPGNvreL~~~l~~~~~~ 553 (638)
T PRK11388 529 ARLVSYRWPGNDFELRSVIENLALS 553 (638)
T ss_pred HHHHcCCCCChHHHHHHHHHHHHHh
Confidence 9999887 79999999999987753
No 200
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.54 E-value=5e-07 Score=91.02 Aligned_cols=183 Identities=16% Similarity=0.282 Sum_probs=91.2
Q ss_pred ChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHH--h--CCeEEEEe-CCCc---h-hhhhhhhcc
Q 009072 154 QRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASH--L--GARLYEWD-TPTP---T-IWQEYMHNC 224 (544)
Q Consensus 154 ~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~e--l--g~~viei~-~s~~---~-~~~e~l~~~ 224 (544)
+++.+++|..+|.... ...+.+.|+|++|+|||++|..+++. . .+..+.|- .+.. . .....+...
T Consensus 1 re~~~~~l~~~L~~~~------~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l 74 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNS------NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQL 74 (287)
T ss_dssp -HHHHHHHHHHHHTTT------TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhCCC------CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccc
Confidence 3677888888887632 23389999999999999999999987 3 33333332 2211 1 111111111
Q ss_pred ccC---cccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHHHHHhcCCCcEEEEEc
Q 009072 225 KTG---LEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPTAVVLT 301 (544)
Q Consensus 225 ~~g---~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~~~~~~~~piIiI~t 301 (544)
... .......... ...+...- ..++.+||||+++... .+.. +...+.......-+|+|
T Consensus 75 ~~~~~~~~~~~~~~~~---~~~l~~~L---------~~~~~LlVlDdv~~~~---~~~~----l~~~~~~~~~~~kilvT 135 (287)
T PF00931_consen 75 GEPDSSISDPKDIEEL---QDQLRELL---------KDKRCLLVLDDVWDEE---DLEE----LREPLPSFSSGSKILVT 135 (287)
T ss_dssp TCC-STSSCCSSHHHH---HHHHHHHH---------CCTSEEEEEEEE-SHH---HH-----------HCHHSS-EEEEE
T ss_pred cccccccccccccccc---cccchhhh---------ccccceeeeeeecccc---cccc----ccccccccccccccccc
Confidence 111 1011111112 22222111 1348899999998632 1111 22222211111233334
Q ss_pred cCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHHhC---CCCCHHHHHHHHHHcCCcHHH
Q 009072 302 ECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQ---YSLSTEQIDLVAQASGGDIRQ 374 (544)
Q Consensus 302 ~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e~---~~i~~~~l~~Ia~~s~GDiR~ 374 (544)
+... . +...... ....+++.+++.++..+++.+.+.... ....++..+.|++.++|-+-.
T Consensus 136 TR~~---------~---v~~~~~~-~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLa 198 (287)
T PF00931_consen 136 TRDR---------S---VAGSLGG-TDKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLA 198 (287)
T ss_dssp ESCG---------G---GGTTHHS-CEEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHH
T ss_pred cccc---------c---ccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 3211 0 0010111 156899999999999999998875443 122355678999999886443
No 201
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.53 E-value=1.4e-07 Score=84.43 Aligned_cols=91 Identities=18% Similarity=0.324 Sum_probs=53.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCCchhhhhhhhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCC
Q 009072 180 VLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESK 259 (544)
Q Consensus 180 ~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~~~~~~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~ 259 (544)
.+||+||||||||++|+.+|+.++.+++.++.+......+.+.......... .+. .........
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~--------------~~~--~~~l~~a~~ 64 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQF--------------EFK--DGPLVRAMR 64 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTT--------------CEE--E-CCCTTHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeeccccc--------------ccc--ccccccccc
Confidence 4899999999999999999999999999888776543333332211000000 000 000000112
Q ss_pred CceEEEEecCCCCCchhHHHHHHHHHHHHHhc
Q 009072 260 SSAILLIDDLPVTNGRTAFERLRQCLLLLVRS 291 (544)
Q Consensus 260 ~~~vIlIDEid~l~~~~~~~~~~~~L~~~~~~ 291 (544)
++.+++|||++... ..+++.|..+++.
T Consensus 65 ~~~il~lDEin~a~-----~~v~~~L~~ll~~ 91 (139)
T PF07728_consen 65 KGGILVLDEINRAP-----PEVLESLLSLLEE 91 (139)
T ss_dssp EEEEEEESSCGG-------HHHHHTTHHHHSS
T ss_pred ceeEEEECCcccCC-----HHHHHHHHHHHhh
Confidence 57899999999865 2345556666654
No 202
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=98.51 E-value=2.8e-06 Score=92.29 Aligned_cols=211 Identities=15% Similarity=0.178 Sum_probs=120.7
Q ss_pred CCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeCCCchh--hhhh
Q 009072 146 RSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTPTPTI--WQEY 220 (544)
Q Consensus 146 ~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~el---g~~viei~~s~~~~--~~e~ 220 (544)
.+|++++|.....+++.+-++..... ...+||+|++||||+++|+.+-... +.+++.+|+..... +...
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~~~A~~------~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~llese 282 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVRLYARS------DATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAESLLEAE 282 (526)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhCC------CCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChhHHHHH
Confidence 56889999999999998888765321 1579999999999999999998753 56899999765321 1100
Q ss_pred hhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHHHHHhcCCC------
Q 009072 221 MHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHI------ 294 (544)
Q Consensus 221 l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~~~~~~~~------ 294 (544)
+.....|.........-..+++. .....|+|||++.++.. ++..|+.+++....
T Consensus 283 LFG~~~gaftga~~~~~~Gl~e~---------------A~gGTLfLdeI~~Lp~~-----~Q~~Ll~~L~~~~~~r~g~~ 342 (526)
T TIGR02329 283 LFGYEEGAFTGARRGGRTGLIEA---------------AHRGTLFLDEIGEMPLP-----LQTRLLRVLEEREVVRVGGT 342 (526)
T ss_pred hcCCcccccccccccccccchhh---------------cCCceEEecChHhCCHH-----HHHHHHHHHhcCcEEecCCC
Confidence 10000000000000000000110 12458999999998753 33445555554321
Q ss_pred -c----EEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCH--HHHHHHHHHHHH----HhCCCCCHHHHHH
Q 009072 295 -P----TAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITN--GSIKRTLSKICR----QEQYSLSTEQIDL 363 (544)
Q Consensus 295 -p----iIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~--~~i~~~L~~i~~----~e~~~i~~~~l~~ 363 (544)
+ +-+|+++...... ...... ..+.+..+..+..|.++|+.. +++..++...+. ..++.++++++..
T Consensus 343 ~~~~~dvRiIaat~~~l~~-~v~~g~--fr~dL~~rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~ 419 (526)
T TIGR02329 343 EPVPVDVRVVAATHCALTT-AVQQGR--FRRDLFYRLSILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAAAQV 419 (526)
T ss_pred ceeeecceEEeccCCCHHH-Hhhhcc--hhHHHHHhcCCcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 1 1233333211000 000001 112444555567888888854 455555544443 3456788888876
Q ss_pred -------HHHH-cCCcHHHHHHHHHHhccC
Q 009072 364 -------VAQA-SGGDIRQAITSLQFSSLK 385 (544)
Q Consensus 364 -------Ia~~-s~GDiR~aIn~Lq~~~~~ 385 (544)
|... --|++|..-|.++.++..
T Consensus 420 ~~~~~~~L~~y~WPGNvrEL~nvier~~i~ 449 (526)
T TIGR02329 420 LAGVADPLQRYPWPGNVRELRNLVERLALE 449 (526)
T ss_pred hHHHHHHHHhCCCCchHHHHHHHHHHHHHh
Confidence 4443 469999999999988753
No 203
>PRK08116 hypothetical protein; Validated
Probab=98.50 E-value=1.3e-06 Score=87.18 Aligned_cols=69 Identities=23% Similarity=0.306 Sum_probs=45.4
Q ss_pred ccCCCCcchhccCh---HHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeCCC
Q 009072 142 KYKPRSLEELAVQR---KKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTPT 213 (544)
Q Consensus 142 ky~P~~~~dLv~~~---~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~el---g~~viei~~s~ 213 (544)
+|.-.+|+.+...+ ..+...+.++..+... ...+..++|+||||+|||++|.++|+++ +..++.++.++
T Consensus 78 ~~~~~tFdnf~~~~~~~~a~~~a~~y~~~~~~~---~~~~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ 152 (268)
T PRK08116 78 KFRNSTFENFLFDKGSEKAYKIARKYVKKFEEM---KKENVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQ 152 (268)
T ss_pred HHHhcchhcccCChHHHHHHHHHHHHHHHHHhh---ccCCceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence 44445565554333 2344556666655321 1122569999999999999999999986 77777776543
No 204
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=98.50 E-value=4.9e-06 Score=90.42 Aligned_cols=210 Identities=15% Similarity=0.172 Sum_probs=118.6
Q ss_pred CCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHH-----------hCCeEEEEeCCCc
Q 009072 146 RSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASH-----------LGARLYEWDTPTP 214 (544)
Q Consensus 146 ~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~e-----------lg~~viei~~s~~ 214 (544)
.++++++|.....+++.+-+..... . ...+||+|++||||+++|+++-.. .+.+++.+|+...
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~A~----s--~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaal 289 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLYAR----S--SAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAI 289 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhC----C--CCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecccC
Confidence 3688899999999999988876532 1 157999999999999999999876 3568999998653
Q ss_pred hh--hhhhhhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHHHHHhcC
Q 009072 215 TI--WQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRST 292 (544)
Q Consensus 215 ~~--~~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~~~~~~ 292 (544)
.. +...+.....|.........-.-+++ ......|+|||++.++.. ++..|+.+++..
T Consensus 290 ~e~lleseLFG~~~gaftga~~~~~~Gl~e---------------~A~gGTLfLdeI~~Lp~~-----~Q~kLl~~L~e~ 349 (538)
T PRK15424 290 AESLLEAELFGYEEGAFTGSRRGGRAGLFE---------------IAHGGTLFLDEIGEMPLP-----LQTRLLRVLEEK 349 (538)
T ss_pred ChhhHHHHhcCCccccccCccccccCCchh---------------ccCCCEEEEcChHhCCHH-----HHHHHHhhhhcC
Confidence 21 10000000000000000000000011 112458999999998753 334455555543
Q ss_pred CC-----------cEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCH--HHHHHHHHHHHHH----hCCC
Q 009072 293 HI-----------PTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITN--GSIKRTLSKICRQ----EQYS 355 (544)
Q Consensus 293 ~~-----------piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~--~~i~~~L~~i~~~----e~~~ 355 (544)
.. .+-+|+++...... ......+ -..+..|..+..|.++|+.. +++..++...+.+ .+..
T Consensus 350 ~~~r~G~~~~~~~dvRiIaat~~~L~~-~v~~g~F--r~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~ 426 (538)
T PRK15424 350 EVTRVGGHQPVPVDVRVISATHCDLEE-DVRQGRF--RRDLFYRLSILRLQLPPLRERVADILPLAESFLKQSLAALSAP 426 (538)
T ss_pred eEEecCCCceeccceEEEEecCCCHHH-HHhcccc--hHHHHHHhcCCeecCCChhhchhHHHHHHHHHHHHHHHHcCCC
Confidence 21 12234433111000 0000001 12345555577888888854 4566666555543 4666
Q ss_pred CCHHHHHHHH-------HH-cCCcHHHHHHHHHHhcc
Q 009072 356 LSTEQIDLVA-------QA-SGGDIRQAITSLQFSSL 384 (544)
Q Consensus 356 i~~~~l~~Ia-------~~-s~GDiR~aIn~Lq~~~~ 384 (544)
++++++..+. .. --|++|..-|.++-++.
T Consensus 427 ~~~~a~~~~~~a~~~L~~y~WPGNvREL~nvier~~i 463 (538)
T PRK15424 427 FSAALRQGLQQCETLLLHYDWPGNVRELRNLMERLAL 463 (538)
T ss_pred CCHHHHHhhHHHHHHHHhCCCCchHHHHHHHHHHHHH
Confidence 7887764322 22 35999999999998775
No 205
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.47 E-value=5.7e-06 Score=90.40 Aligned_cols=212 Identities=13% Similarity=0.196 Sum_probs=121.0
Q ss_pred CCCCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeCCCchh-h-h
Q 009072 144 KPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTPTPTI-W-Q 218 (544)
Q Consensus 144 ~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~el---g~~viei~~s~~~~-~-~ 218 (544)
...+|++++|.....+++...++.... . ...+||+|++||||+++|+++-... ..+++.+++..... . .
T Consensus 199 ~~~~f~~~ig~s~~~~~~~~~~~~~A~----~--~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~~~~e 272 (520)
T PRK10820 199 DDSAFSQIVAVSPKMRQVVEQARKLAM----L--DAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPDDVVE 272 (520)
T ss_pred ccccccceeECCHHHHHHHHHHHHHhC----C--CCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCHHHHH
Confidence 345888999999988888888776532 1 1469999999999999999986553 35788888765321 0 0
Q ss_pred hhhhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHHHHHhcCC-----
Q 009072 219 EYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTH----- 293 (544)
Q Consensus 219 e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~~~~~~~----- 293 (544)
..+.....|. +......-..+++. .....|+|||++.++.. ++..|..+++...
T Consensus 273 ~elFG~~~~~-~~~~~~~~~g~~e~---------------a~~GtL~LdeI~~L~~~-----~Q~~Ll~~l~~~~~~~~g 331 (520)
T PRK10820 273 SELFGHAPGA-YPNALEGKKGFFEQ---------------ANGGSVLLDEIGEMSPR-----MQAKLLRFLNDGTFRRVG 331 (520)
T ss_pred HHhcCCCCCC-cCCcccCCCChhhh---------------cCCCEEEEeChhhCCHH-----HHHHHHHHHhcCCcccCC
Confidence 0000000000 00000000000111 12458999999998753 2334555555432
Q ss_pred ------CcEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCH--HHHHHH----HHHHHHHhC---CCCCH
Q 009072 294 ------IPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITN--GSIKRT----LSKICRQEQ---YSLST 358 (544)
Q Consensus 294 ------~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~--~~i~~~----L~~i~~~e~---~~i~~ 358 (544)
..+-+|+++........ ....+ ...+..+..+..|.++|+.. +++..+ |.+.+.+.+ ..+++
T Consensus 332 ~~~~~~~~vRiI~st~~~l~~l~-~~g~f--~~dL~~rL~~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~ 408 (520)
T PRK10820 332 EDHEVHVDVRVICATQKNLVELV-QKGEF--REDLYYRLNVLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAA 408 (520)
T ss_pred CCcceeeeeEEEEecCCCHHHHH-HcCCc--cHHHHhhcCeeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCH
Confidence 12335554422100000 00001 12344554567888888855 345443 444444444 36899
Q ss_pred HHHHHHHHH-cCCcHHHHHHHHHHhccC
Q 009072 359 EQIDLVAQA-SGGDIRQAITSLQFSSLK 385 (544)
Q Consensus 359 ~~l~~Ia~~-s~GDiR~aIn~Lq~~~~~ 385 (544)
++++.|... -.||+|..-|.++.++..
T Consensus 409 ~a~~~L~~y~WPGNvreL~nvl~~a~~~ 436 (520)
T PRK10820 409 DLNTVLTRYGWPGNVRQLKNAIYRALTQ 436 (520)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHHh
Confidence 999999877 679999999998877753
No 206
>PF13173 AAA_14: AAA domain
Probab=98.47 E-value=1.5e-06 Score=76.72 Aligned_cols=36 Identities=31% Similarity=0.561 Sum_probs=30.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhC--CeEEEEeCCCc
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLG--ARLYEWDTPTP 214 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg--~~viei~~s~~ 214 (544)
+.++|+||.||||||+++.+++++. -+++.++..+.
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~ 40 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDP 40 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCH
Confidence 6899999999999999999999886 66777776554
No 207
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=3.1e-06 Score=84.02 Aligned_cols=63 Identities=22% Similarity=0.360 Sum_probs=48.5
Q ss_pred hccChHHHHHHHHHHHHhhcC------CCCCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCC
Q 009072 151 LAVQRKKVEEVRAWFEERLGD------SKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPT 213 (544)
Q Consensus 151 Lv~~~~~~~~l~~wL~~~~~~------~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~ 213 (544)
++|+++..+.+.-.|.+.-.+ .+....++++|+.||+|+|||..||.+|+-.+.+++.+.+.-
T Consensus 17 IIGQ~~AKkaVAIALRNR~RR~qL~~~lr~EV~PKNILMIGpTGVGKTEIARRLAkl~~aPFiKVEATK 85 (444)
T COG1220 17 IIGQDEAKKAVAIALRNRWRRMQLEEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAGAPFIKVEATK 85 (444)
T ss_pred hcCcHHHHHHHHHHHHHHHHHHhcCHHHhhccCccceEEECCCCCcHHHHHHHHHHHhCCCeEEEEeee
Confidence 678888888887666542111 012233489999999999999999999999999999988764
No 208
>PRK08181 transposase; Validated
Probab=98.44 E-value=5.6e-07 Score=89.41 Aligned_cols=34 Identities=29% Similarity=0.319 Sum_probs=28.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeCC
Q 009072 179 NVLVITGQAGVGKTATVRQIASHL---GARLYEWDTP 212 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~el---g~~viei~~s 212 (544)
..++|+||||+|||+++.++|+++ |+.++.+..+
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~ 143 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTT 143 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHH
Confidence 579999999999999999999765 7777766653
No 209
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.44 E-value=4.3e-07 Score=78.79 Aligned_cols=32 Identities=28% Similarity=0.471 Sum_probs=23.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeC
Q 009072 180 VLVITGQAGVGKTATVRQIASHLGARLYEWDT 211 (544)
Q Consensus 180 ~lLL~GPpG~GKTtla~~lA~elg~~viei~~ 211 (544)
++||.|+||+|||++|+++|+.+|..+..+..
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~ 32 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQF 32 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE-
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEe
Confidence 58999999999999999999999999887754
No 210
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.42 E-value=6e-06 Score=84.87 Aligned_cols=209 Identities=13% Similarity=0.156 Sum_probs=120.3
Q ss_pred CcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeCCCchh--hhhhh
Q 009072 147 SLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTPTPTI--WQEYM 221 (544)
Q Consensus 147 ~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~el---g~~viei~~s~~~~--~~e~l 221 (544)
.+++|+|.....+++.+-+...... ...+||+|++||||+++|+++-... +.+++.+++..... +...+
T Consensus 4 ~~~~liG~S~~~~~~~~~i~~~a~~------~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~~~~l 77 (326)
T PRK11608 4 YKDNLLGEANSFLEVLEQVSRLAPL------DKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSEL 77 (326)
T ss_pred ccCccEECCHHHHHHHHHHHHHhCC------CCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHHHHHH
Confidence 3567899999999998888776431 1569999999999999999997654 45789998775321 01100
Q ss_pred hccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHHHHHhcCC--------
Q 009072 222 HNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTH-------- 293 (544)
Q Consensus 222 ~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~~~~~~~-------- 293 (544)
.....+. +..........++ ......|+|||++.++.. ++..|..+++.+.
T Consensus 78 fg~~~~~-~~g~~~~~~g~l~---------------~a~gGtL~l~~i~~L~~~-----~Q~~L~~~l~~~~~~~~g~~~ 136 (326)
T PRK11608 78 FGHEAGA-FTGAQKRHPGRFE---------------RADGGTLFLDELATAPML-----VQEKLLRVIEYGELERVGGSQ 136 (326)
T ss_pred ccccccc-cCCcccccCCchh---------------ccCCCeEEeCChhhCCHH-----HHHHHHHHHhcCcEEeCCCCc
Confidence 0000000 0000000000010 112458999999998753 3344555555432
Q ss_pred ---CcEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCH--HHHHHHHHHH----HHHhC----CCCCHHH
Q 009072 294 ---IPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITN--GSIKRTLSKI----CRQEQ----YSLSTEQ 360 (544)
Q Consensus 294 ---~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~--~~i~~~L~~i----~~~e~----~~i~~~~ 360 (544)
..+-+|++...... .....-.....++.++....|.++|+.. +++..++... +...+ ..+++++
T Consensus 137 ~~~~~~RiI~~s~~~l~---~l~~~g~f~~dL~~~l~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~a 213 (326)
T PRK11608 137 PLQVNVRLVCATNADLP---AMVAEGKFRADLLDRLAFDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERA 213 (326)
T ss_pred eeeccEEEEEeCchhHH---HHHHcCCchHHHHHhcCCCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHH
Confidence 12344554321100 0000001113455555567888888854 3555555444 33333 2579999
Q ss_pred HHHHHHHc-CCcHHHHHHHHHHhccC
Q 009072 361 IDLVAQAS-GGDIRQAITSLQFSSLK 385 (544)
Q Consensus 361 l~~Ia~~s-~GDiR~aIn~Lq~~~~~ 385 (544)
+..|.... -||+|..-|.++.++..
T Consensus 214 l~~L~~y~WPGNvrEL~~vl~~a~~~ 239 (326)
T PRK11608 214 RETLLNYRWPGNIRELKNVVERSVYR 239 (326)
T ss_pred HHHHHhCCCCcHHHHHHHHHHHHHHh
Confidence 99988763 69999999999988764
No 211
>PRK06921 hypothetical protein; Provisional
Probab=98.40 E-value=6.7e-06 Score=81.89 Aligned_cols=51 Identities=22% Similarity=0.309 Sum_probs=34.9
Q ss_pred HHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHh----CCeEEEEeC
Q 009072 159 EEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL----GARLYEWDT 211 (544)
Q Consensus 159 ~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~el----g~~viei~~ 211 (544)
.....|+..+.....+. .+.++|+||||+|||+++.++|+++ |..++.+..
T Consensus 100 ~~~~~~~~~f~~~~~~~--~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~ 154 (266)
T PRK06921 100 ECAVEYVKDFEKIQESR--KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPF 154 (266)
T ss_pred HHHHHHHHHHHHhcccC--CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEH
Confidence 33445666543211111 2689999999999999999999986 566666654
No 212
>PRK06526 transposase; Provisional
Probab=98.38 E-value=5.6e-07 Score=88.91 Aligned_cols=31 Identities=26% Similarity=0.319 Sum_probs=25.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh---CCeEEEE
Q 009072 179 NVLVITGQAGVGKTATVRQIASHL---GARLYEW 209 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~el---g~~viei 209 (544)
..++|+||||+|||+++.+++.++ |+.++.+
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~ 132 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFA 132 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhh
Confidence 679999999999999999998875 6665443
No 213
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.37 E-value=1.7e-05 Score=89.88 Aligned_cols=210 Identities=13% Similarity=0.183 Sum_probs=119.7
Q ss_pred CCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeCCCch--hhhhh
Q 009072 146 RSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTPTPT--IWQEY 220 (544)
Q Consensus 146 ~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~el---g~~viei~~s~~~--~~~e~ 220 (544)
..+.+++|.....+.+.+-++.... . ...+||+|++|||||++|+++.... +.+++.+++.... .+...
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~~a~---~---~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~~~~~~ 446 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEMVAQ---S---DSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESD 446 (686)
T ss_pred ccccceeecCHHHHHHHHHHHHHhC---C---CCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChhHhhhh
Confidence 4677899999999998887776533 1 1479999999999999999998764 5789999876532 11111
Q ss_pred hhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHHHHHhcCC-------
Q 009072 221 MHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTH------- 293 (544)
Q Consensus 221 l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~~~~~~~------- 293 (544)
+.....+.......... ..++. ....+|+|||++.+... ++..|..+++...
T Consensus 447 lfg~~~~~~~g~~~~~~-g~le~---------------a~~GtL~Ldei~~L~~~-----~Q~~L~~~l~~~~~~~~g~~ 505 (686)
T PRK15429 447 LFGHERGAFTGASAQRI-GRFEL---------------ADKSSLFLDEVGDMPLE-----LQPKLLRVLQEQEFERLGSN 505 (686)
T ss_pred hcCcccccccccccchh-hHHHh---------------cCCCeEEEechhhCCHH-----HHHHHHHHHHhCCEEeCCCC
Confidence 11000010000000000 01111 12358999999998653 3334555554432
Q ss_pred ----CcEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCH--HHHHHHHHHH----HHHhCC---CCCHHH
Q 009072 294 ----IPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITN--GSIKRTLSKI----CRQEQY---SLSTEQ 360 (544)
Q Consensus 294 ----~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~--~~i~~~L~~i----~~~e~~---~i~~~~ 360 (544)
..+-+|++++..... ......+ ...+..+.....|.++|+.. +++..++... +.+.+. .+++++
T Consensus 506 ~~~~~~~RiI~~t~~~l~~-~~~~~~f--~~~L~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~a 582 (686)
T PRK15429 506 KIIQTDVRLIAATNRDLKK-MVADREF--RSDLYYRLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAET 582 (686)
T ss_pred CcccceEEEEEeCCCCHHH-HHHcCcc--cHHHHhccCeeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHHH
Confidence 122344443211000 0000000 12244444466788888854 4554444443 333332 478999
Q ss_pred HHHHHHH-cCCcHHHHHHHHHHhccC
Q 009072 361 IDLVAQA-SGGDIRQAITSLQFSSLK 385 (544)
Q Consensus 361 l~~Ia~~-s~GDiR~aIn~Lq~~~~~ 385 (544)
++.|... --|++|..-|.++.++..
T Consensus 583 l~~L~~y~WPGNvrEL~~~i~~a~~~ 608 (686)
T PRK15429 583 LRTLSNMEWPGNVRELENVIERAVLL 608 (686)
T ss_pred HHHHHhCCCCCcHHHHHHHHHHHHHh
Confidence 9998776 469999999999988764
No 214
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=98.36 E-value=2.5e-05 Score=80.16 Aligned_cols=47 Identities=19% Similarity=0.273 Sum_probs=36.9
Q ss_pred cchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 009072 148 LEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL 202 (544)
Q Consensus 148 ~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~el 202 (544)
|..++|+++.+..+.-.+-. . ....++|.||||+||||++++++.-+
T Consensus 3 f~~ivgq~~~~~al~~~~~~------~--~~g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 3 FTAIVGQDEMKLALLLNVID------P--KIGGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred ccccccHHHHHHHHHHHhcC------C--CCCeEEEEcCCCCCHHHHHHHHHHhh
Confidence 67789999888776544322 1 12579999999999999999999887
No 215
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.35 E-value=4.2e-07 Score=85.03 Aligned_cols=59 Identities=20% Similarity=0.402 Sum_probs=37.6
Q ss_pred hhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhCCe---EEEEeCCC
Q 009072 150 ELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGAR---LYEWDTPT 213 (544)
Q Consensus 150 dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~---viei~~s~ 213 (544)
.++|+++.++++...+. ... +.. ++.++|+||+|+|||++++.++..+... ++.++...
T Consensus 1 ~fvgR~~e~~~l~~~l~-~~~---~~~-~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~ 62 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLD-AAQ---SGS-PRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDD 62 (185)
T ss_dssp --TT-HHHHHHHHHTTG-GTS---S------EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEET
T ss_pred CCCCHHHHHHHHHHHHH-HHH---cCC-CcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEec
Confidence 36899999999999986 322 222 2799999999999999999888776322 55555443
No 216
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.34 E-value=1.1e-06 Score=89.94 Aligned_cols=67 Identities=18% Similarity=0.293 Sum_probs=53.6
Q ss_pred cCCCCcc-hhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhCC-------eEEEEeC
Q 009072 143 YKPRSLE-ELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGA-------RLYEWDT 211 (544)
Q Consensus 143 y~P~~~~-dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg~-------~viei~~ 211 (544)
++-.-|+ ++.|+++.+.++.+|++.+.... ...+++++|.||||+||||+|++||+.++. +++.+..
T Consensus 44 ~~y~~F~~~~~G~~~~i~~lv~~l~~~a~g~--~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~ 118 (361)
T smart00763 44 KRYRFFDHDFFGMEEAIERFVNYFKSAAQGL--EERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKW 118 (361)
T ss_pred eeccccchhccCcHHHHHHHHHHHHHHHhcC--CCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEe
Confidence 3444566 89999999999999999987531 233489999999999999999999999965 6655544
No 217
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=98.32 E-value=3e-05 Score=79.71 Aligned_cols=53 Identities=21% Similarity=0.300 Sum_probs=40.6
Q ss_pred ccCCC-CcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 009072 142 KYKPR-SLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL 202 (544)
Q Consensus 142 ky~P~-~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~el 202 (544)
+-+|. .|++++|+++.+..|.-.+.. . ....+||.||+|+||||+|+.+++.+
T Consensus 9 ~~~~~~pf~~ivGq~~~k~al~~~~~~------p--~~~~vli~G~~GtGKs~~ar~~~~~l 62 (350)
T CHL00081 9 KERPVFPFTAIVGQEEMKLALILNVID------P--KIGGVMIMGDRGTGKSTTIRALVDLL 62 (350)
T ss_pred ccCCCCCHHHHhChHHHHHHHHHhccC------C--CCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 33444 799999999877776554433 1 22579999999999999999998876
No 218
>PF05729 NACHT: NACHT domain
Probab=98.32 E-value=1.4e-05 Score=73.02 Aligned_cols=79 Identities=22% Similarity=0.315 Sum_probs=47.1
Q ss_pred CCceEEEEecCCCCCchhH---HHHHHHHHHHHHhc--C-CCcEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEE
Q 009072 259 KSSAILLIDDLPVTNGRTA---FERLRQCLLLLVRS--T-HIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVA 332 (544)
Q Consensus 259 ~~~~vIlIDEid~l~~~~~---~~~~~~~L~~~~~~--~-~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~ 332 (544)
..+.+||||-+|.+..... ...+.+.|..++.. . ...+++.+... ....+...+.. ...+.
T Consensus 80 ~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~-----------~~~~~~~~~~~--~~~~~ 146 (166)
T PF05729_consen 80 NKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPR-----------AFPDLRRRLKQ--AQILE 146 (166)
T ss_pred CCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCC-----------hHHHHHHhcCC--CcEEE
Confidence 4577999999998865321 12344556566655 2 23344443321 12223333333 35789
Q ss_pred ecCCCHHHHHHHHHHHHH
Q 009072 333 LNPITNGSIKRTLSKICR 350 (544)
Q Consensus 333 f~p~s~~~i~~~L~~i~~ 350 (544)
..+.+..++.+++++...
T Consensus 147 l~~~~~~~~~~~~~~~f~ 164 (166)
T PF05729_consen 147 LEPFSEEDIKQYLRKYFS 164 (166)
T ss_pred ECCCCHHHHHHHHHHHhh
Confidence 999999999999987653
No 219
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=98.32 E-value=8.1e-05 Score=71.80 Aligned_cols=186 Identities=20% Similarity=0.243 Sum_probs=107.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCC---eEEEEeCCCchh--hhhhhhccccCccc---ccchHHHHHHHHHHHhhcCC
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLGA---RLYEWDTPTPTI--WQEYMHNCKTGLEY---TSKLDEFENFVERIRRYGST 250 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg~---~viei~~s~~~~--~~e~l~~~~~g~~~---~s~~~~~~~~l~~~~~~~~l 250 (544)
..+.++|+-|+|||.+.|+++.-+.- .++.+.++.... ..+.+.....+-.. ........+.+...-..
T Consensus 52 g~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~--- 128 (269)
T COG3267 52 GILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKK--- 128 (269)
T ss_pred ceEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHh---
Confidence 58999999999999999976665532 233444444321 11111111111000 01122233333333222
Q ss_pred CCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHHHHHhcCCCcE-EEEEccCCCCCCCCccccchHHHHHHHhhcCce
Q 009072 251 SPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPT-AVVLTECGKADSVDSTAQSFEELQSILVDAGAR 329 (544)
Q Consensus 251 ~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~~~~~~~~pi-IiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~ 329 (544)
.++|.++++||++.+.... ...+ ..|.+.......|. |+.++- +.-.++. ++..++.+-.| +.
T Consensus 129 -------g~r~v~l~vdEah~L~~~~-le~L-rll~nl~~~~~~~l~ivL~Gq--p~L~~~l---r~~~l~e~~~R--~~ 192 (269)
T COG3267 129 -------GKRPVVLMVDEAHDLNDSA-LEAL-RLLTNLEEDSSKLLSIVLIGQ--PKLRPRL---RLPVLRELEQR--ID 192 (269)
T ss_pred -------CCCCeEEeehhHhhhChhH-HHHH-HHHHhhcccccCceeeeecCC--cccchhh---chHHHHhhhhe--EE
Confidence 1456899999999876532 2222 22344444444553 333332 1111111 33344555555 55
Q ss_pred e-EEecCCCHHHHHHHHHHHHHHhCCC---CCHHHHHHHHHHcCCcHHHHHHHHHHhcc
Q 009072 330 K-VALNPITNGSIKRTLSKICRQEQYS---LSTEQIDLVAQASGGDIRQAITSLQFSSL 384 (544)
Q Consensus 330 ~-I~f~p~s~~~i~~~L~~i~~~e~~~---i~~~~l~~Ia~~s~GDiR~aIn~Lq~~~~ 384 (544)
. |...|++.++...+|+..++..+.. ++++++..|...+.| +-.+||++--.++
T Consensus 193 ir~~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg-~P~lin~~~~~Al 250 (269)
T COG3267 193 IRIELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQG-IPRLINNLATLAL 250 (269)
T ss_pred EEEecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhcc-chHHHHHHHHHHH
Confidence 5 9999999999999999999877543 679999999999999 7777888765554
No 220
>PRK13695 putative NTPase; Provisional
Probab=98.31 E-value=2.4e-05 Score=72.89 Aligned_cols=147 Identities=20% Similarity=0.271 Sum_probs=79.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeCCCch------hh--hhhh---hc-cc-cCc-c------cccchHH
Q 009072 180 VLVITGQAGVGKTATVRQIASHL---GARLYEWDTPTPT------IW--QEYM---HN-CK-TGL-E------YTSKLDE 236 (544)
Q Consensus 180 ~lLL~GPpG~GKTtla~~lA~el---g~~viei~~s~~~------~~--~e~l---~~-~~-~g~-~------~~s~~~~ 236 (544)
.++|+|++|+||||+++.++.++ |+.+.-+...... .+ .... .. .. .+. . +....+.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~~G~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~lsg 81 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKEEGYKVGGFYTEEVREGGKRIGFKIIDLDTGEEGILARVGFPSRPRVGKYVVNLED 81 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEcHHHHhcCCccceEEEEcCCCCeEEccccCCCCCCceeeEEEehHH
Confidence 48899999999999999988775 5654433221100 00 0000 00 00 000 0 0111223
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHHHHHhcCCCcEEEEEccCCCCCCCCccccch
Q 009072 237 FENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPTAVVLTECGKADSVDSTAQSF 316 (544)
Q Consensus 237 ~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~~~~~~~~piIiI~t~~~~~~~~d~~~~~l 316 (544)
+..+........ -.++.+|++||+..+...+ ..+.+.+..+++ ...|+|+++.... ..
T Consensus 82 le~~~~~l~~~~---------l~~~~~lllDE~~~~e~~~--~~~~~~l~~~~~-~~~~~i~v~h~~~----------~~ 139 (174)
T PRK13695 82 LERIGIPALERA---------LEEADVIIIDEIGKMELKS--PKFVKAVEEVLD-SEKPVIATLHRRS----------VH 139 (174)
T ss_pred HHHHHHHHHHhc---------cCCCCEEEEECCCcchhhh--HHHHHHHHHHHh-CCCeEEEEECchh----------hH
Confidence 333333222221 1357799999985543321 234566777774 4456776665311 11
Q ss_pred HHHHHHHhhcCceeEEecCCCHHHHHHHHHHH
Q 009072 317 EELQSILVDAGARKVALNPITNGSIKRTLSKI 348 (544)
Q Consensus 317 ~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i 348 (544)
.....+..++.+.++.+.+-+.+++...+.+.
T Consensus 140 ~~~~~i~~~~~~~i~~~~~~~r~~~~~~~~~~ 171 (174)
T PRK13695 140 PFVQEIKSRPGGRVYELTPENRDSLPFEILNR 171 (174)
T ss_pred HHHHHHhccCCcEEEEEcchhhhhHHHHHHHH
Confidence 22455666677889999888888877776654
No 221
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.30 E-value=2.2e-05 Score=94.02 Aligned_cols=52 Identities=19% Similarity=0.342 Sum_probs=42.7
Q ss_pred CCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhC
Q 009072 146 RSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLG 203 (544)
Q Consensus 146 ~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg 203 (544)
..+.+++|.+..++++..++... ....+.+-|+||+|+||||+|++++..+.
T Consensus 181 ~~~~~~vG~~~~l~~l~~lL~l~------~~~~~vvgI~G~gGiGKTTLA~~l~~~l~ 232 (1153)
T PLN03210 181 NDFEDFVGIEDHIAKMSSLLHLE------SEEVRMVGIWGSSGIGKTTIARALFSRLS 232 (1153)
T ss_pred cccccccchHHHHHHHHHHHccc------cCceEEEEEEcCCCCchHHHHHHHHHHHh
Confidence 46778999999999999988532 11237899999999999999999988864
No 222
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.30 E-value=4.9e-05 Score=83.01 Aligned_cols=210 Identities=14% Similarity=0.154 Sum_probs=119.8
Q ss_pred CcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeCCCchh-h-hhhh
Q 009072 147 SLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTPTPTI-W-QEYM 221 (544)
Q Consensus 147 ~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~el---g~~viei~~s~~~~-~-~e~l 221 (544)
...+++|+...++++.+-++.... . ...+||+|++||||+++|+++.... +.+++.+++..... . ...+
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~-----~-~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~e~~l 258 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAA-----S-DLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLAESEL 258 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhC-----C-CCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHHHHHh
Confidence 567789999999999998887532 1 2579999999999999999998874 56899999765321 0 0000
Q ss_pred hccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHHHHHhcCCC-------
Q 009072 222 HNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHI------- 294 (544)
Q Consensus 222 ~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~~~~~~~~------- 294 (544)
.....|. +......-...++ ......|+|||++.+... ++..|..+++....
T Consensus 259 fG~~~g~-~~ga~~~~~g~~~---------------~a~gGtL~ldeI~~L~~~-----~Q~~Ll~~l~~~~~~~~g~~~ 317 (509)
T PRK05022 259 FGHVKGA-FTGAISNRSGKFE---------------LADGGTLFLDEIGELPLA-----LQAKLLRVLQYGEIQRVGSDR 317 (509)
T ss_pred cCccccc-cCCCcccCCcchh---------------hcCCCEEEecChhhCCHH-----HHHHHHHHHhcCCEeeCCCCc
Confidence 0000000 0000000000011 112457999999998753 33345555554321
Q ss_pred ----cEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCH--HHHHHHHHHHH----HHhC---CCCCHHHH
Q 009072 295 ----PTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITN--GSIKRTLSKIC----RQEQ---YSLSTEQI 361 (544)
Q Consensus 295 ----piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~--~~i~~~L~~i~----~~e~---~~i~~~~l 361 (544)
.+-+|+++...... ......+ ...+..+.....|.++|+.. +++..++...+ .+.+ +.++++++
T Consensus 318 ~~~~~~RiI~~t~~~l~~-~~~~~~f--~~dL~~rl~~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~ 394 (509)
T PRK05022 318 SLRVDVRVIAATNRDLRE-EVRAGRF--RADLYHRLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQ 394 (509)
T ss_pred ceecceEEEEecCCCHHH-HHHcCCc--cHHHHhcccccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHH
Confidence 22233333111000 0000001 12344444456788888854 35555444443 3323 56899999
Q ss_pred HHHHHHc-CCcHHHHHHHHHHhccCC
Q 009072 362 DLVAQAS-GGDIRQAITSLQFSSLKQ 386 (544)
Q Consensus 362 ~~Ia~~s-~GDiR~aIn~Lq~~~~~~ 386 (544)
+.|.... -||+|..-|.++.++...
T Consensus 395 ~~L~~y~WPGNvrEL~~~i~ra~~~~ 420 (509)
T PRK05022 395 AALLAYDWPGNVRELEHVISRAALLA 420 (509)
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHHhc
Confidence 9998763 599999999999887643
No 223
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.29 E-value=2e-05 Score=70.58 Aligned_cols=35 Identities=43% Similarity=0.603 Sum_probs=27.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeCCC
Q 009072 179 NVLVITGQAGVGKTATVRQIASHL---GARLYEWDTPT 213 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~el---g~~viei~~s~ 213 (544)
..+.++||||+||||++.-+|..+ |+.+.-+-++.
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~E 43 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPE 43 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeee
Confidence 579999999999999999999776 45554444443
No 224
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.28 E-value=3.5e-06 Score=84.19 Aligned_cols=171 Identities=13% Similarity=0.178 Sum_probs=85.2
Q ss_pred CcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhCCe---EEEEeCCCchhhhhhhhc
Q 009072 147 SLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGAR---LYEWDTPTPTIWQEYMHN 223 (544)
Q Consensus 147 ~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~---viei~~s~~~~~~e~l~~ 223 (544)
.+.+++++-....+...+++.+... ++.+||+||+|||||++++.+-+.+.-. +..++-+...
T Consensus 8 ~~~~~~VpT~dt~r~~~ll~~l~~~------~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~T-------- 73 (272)
T PF12775_consen 8 PFNEILVPTVDTVRYSYLLDLLLSN------GRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQT-------- 73 (272)
T ss_dssp -----T---HHHHHHHHHHHHHHHC------TEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTH--------
T ss_pred ccceEEeCcHHHHHHHHHHHHHHHc------CCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCC--------
Confidence 5567777777767777888877652 2679999999999999998887766422 2233322111
Q ss_pred cccCcccccchHHHHHHHHHHHhhcCCCC-CCCCCCCCceEEEEecCCCCCchh-HHHHHHHHHHHHHhcCC--------
Q 009072 224 CKTGLEYTSKLDEFENFVERIRRYGSTSP-SIPGESKSSAILLIDDLPVTNGRT-AFERLRQCLLLLVRSTH-------- 293 (544)
Q Consensus 224 ~~~g~~~~s~~~~~~~~l~~~~~~~~l~~-~~~~~~~~~~vIlIDEid~l~~~~-~~~~~~~~L~~~~~~~~-------- 293 (544)
....++.+++.. ...-.. ......+++.|++|||+..-.... ......+.|+++++.+.
T Consensus 74 ---------ts~~~q~~ie~~--l~k~~~~~~gP~~~k~lv~fiDDlN~p~~d~ygtq~~iElLRQ~i~~~g~yd~~~~~ 142 (272)
T PF12775_consen 74 ---------TSNQLQKIIESK--LEKRRGRVYGPPGGKKLVLFIDDLNMPQPDKYGTQPPIELLRQLIDYGGFYDRKKLE 142 (272)
T ss_dssp ---------HHHHHHHCCCTT--ECECTTEEEEEESSSEEEEEEETTT-S---TTS--HHHHHHHHHHHCSEEECTTTTE
T ss_pred ---------CHHHHHHHHhhc--EEcCCCCCCCCCCCcEEEEEecccCCCCCCCCCCcCHHHHHHHHHHhcCcccCCCcE
Confidence 111222222210 000000 000012467899999997542211 01234577888887632
Q ss_pred ----CcEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHH
Q 009072 294 ----IPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQ 351 (544)
Q Consensus 294 ----~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~ 351 (544)
..+.++++-.... .+ ..+.+.+-| .+.++.+..|+.+.+..+...++..
T Consensus 143 ~~~i~~i~~vaa~~p~~------Gr--~~is~R~~r-~f~i~~~~~p~~~sl~~If~~il~~ 195 (272)
T PF12775_consen 143 WKSIEDIQFVAAMNPTG------GR--NPISPRFLR-HFNILNIPYPSDESLNTIFSSILQS 195 (272)
T ss_dssp EEEECSEEEEEEESSTT------T----SHHHHHHT-TEEEEE----TCCHHHHHHHHHHHH
T ss_pred EEEEeeeEEEEecCCCC------CC--CCCChHHhh-heEEEEecCCChHHHHHHHHHHHhh
Confidence 1344454432111 11 123333333 3789999999999999998888764
No 225
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=2.9e-06 Score=86.68 Aligned_cols=96 Identities=21% Similarity=0.330 Sum_probs=61.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCCchhhhhhhhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCC
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGES 258 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~~~~~~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~ 258 (544)
-++||.||+|+|||.+|+.||+-++.++..-++... +..+|.. +.++.++.++-..+.. .-..
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtL-----------TQAGYVG--eDVEsvi~KLl~~A~~----nVek 289 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTL-----------TQAGYVG--EDVESVIQKLLQEAEY----NVEK 289 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhCCCeEEecccch-----------hhccccc--ccHHHHHHHHHHHccC----CHHH
Confidence 579999999999999999999999999887665442 2223321 2333344333211100 0011
Q ss_pred CCceEEEEecCCCCCch--------h-HHHHHHHHHHHHHhc
Q 009072 259 KSSAILLIDDLPVTNGR--------T-AFERLRQCLLLLVRS 291 (544)
Q Consensus 259 ~~~~vIlIDEid~l~~~--------~-~~~~~~~~L~~~~~~ 291 (544)
-+..|++|||+|.+... + .-++++++|+++++-
T Consensus 290 AQqGIVflDEvDKi~~~~~~i~~~RDVsGEGVQQaLLKllEG 331 (564)
T KOG0745|consen 290 AQQGIVFLDEVDKITKKAESIHTSRDVSGEGVQQALLKLLEG 331 (564)
T ss_pred HhcCeEEEehhhhhcccCccccccccccchhHHHHHHHHhcc
Confidence 23569999999987421 1 134688899999875
No 226
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=98.28 E-value=3.4e-05 Score=86.24 Aligned_cols=47 Identities=17% Similarity=0.232 Sum_probs=37.2
Q ss_pred cchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 009072 148 LEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL 202 (544)
Q Consensus 148 ~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~el 202 (544)
|.+++|++..+..+.-.+.. +.. ..+||.||||+|||++|++|++.+
T Consensus 3 f~~ivGq~~~~~al~~~av~------~~~--g~vli~G~~GtgKs~lar~l~~~l 49 (633)
T TIGR02442 3 FTAIVGQEDLKLALLLNAVD------PRI--GGVLIRGEKGTAKSTAARGLAALL 49 (633)
T ss_pred cchhcChHHHHHHHHHHhhC------CCC--CeEEEEcCCCCcHHHHHHHHHHhC
Confidence 57899999888766544432 222 469999999999999999999987
No 227
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.27 E-value=8.3e-07 Score=83.00 Aligned_cols=35 Identities=26% Similarity=0.343 Sum_probs=27.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeCCC
Q 009072 179 NVLVITGQAGVGKTATVRQIASHL---GARLYEWDTPT 213 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~el---g~~viei~~s~ 213 (544)
..++|+||||+|||++|.++++++ |+.+..++.++
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~ 85 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASD 85 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHH
T ss_pred eEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCc
Confidence 689999999999999999999875 78887776543
No 228
>PRK09183 transposase/IS protein; Provisional
Probab=98.27 E-value=2.6e-06 Score=84.52 Aligned_cols=34 Identities=24% Similarity=0.337 Sum_probs=28.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeCC
Q 009072 179 NVLVITGQAGVGKTATVRQIASHL---GARLYEWDTP 212 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~el---g~~viei~~s 212 (544)
..++|+||||||||+++.+++.++ |+.+..++.+
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~ 139 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAA 139 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHH
Confidence 579999999999999999997664 7777666543
No 229
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.27 E-value=1.3e-05 Score=82.12 Aligned_cols=51 Identities=24% Similarity=0.306 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeCCC
Q 009072 157 KVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTPT 213 (544)
Q Consensus 157 ~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~el---g~~viei~~s~ 213 (544)
.+.....|+..+.. . . ..++|+||||+|||+++.++|+++ |+.|+.+.+++
T Consensus 168 ~~~~~~~f~~~f~~----~-~-~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~ 221 (329)
T PRK06835 168 ILEKCKNFIENFDK----N-N-ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADE 221 (329)
T ss_pred HHHHHHHHHHHHhc----c-C-CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHH
Confidence 33445556666532 1 1 679999999999999999999987 77887776544
No 230
>PRK14700 recombination factor protein RarA; Provisional
Probab=98.27 E-value=2.7e-06 Score=84.24 Aligned_cols=69 Identities=12% Similarity=0.189 Sum_probs=60.0
Q ss_pred cchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHHh------CCCCCHHHHHHHHHHcCCcHHHHHHHHHHhcc
Q 009072 314 QSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQE------QYSLSTEQIDLVAQASGGDIRQAITSLQFSSL 384 (544)
Q Consensus 314 ~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e------~~~i~~~~l~~Ia~~s~GDiR~aIn~Lq~~~~ 384 (544)
+.+....++++| |.++.|+|++.+++..+|++.+..+ .+.+++++++.|++.++||.|.|+|.|+.++.
T Consensus 19 P~f~vn~ALlSR--~~v~~l~~L~~~di~~il~ral~~~~~~~~~~~~i~~~al~~ia~~a~GDaR~aLN~LE~a~~ 93 (300)
T PRK14700 19 PTYYLNDALVSR--LFILRLKRLSLVATQKLIEKALSQDEVLAKHKFKIDDGLYNAMHNYNEGDCRKILNLLERMFL 93 (300)
T ss_pred ccceecHhhhhh--hheeeecCCCHHHHHHHHHHHHHhhhccCCcCCCcCHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 355556788886 8999999999999999999999753 36799999999999999999999999999653
No 231
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.23 E-value=3.2e-05 Score=90.61 Aligned_cols=193 Identities=13% Similarity=0.205 Sum_probs=108.6
Q ss_pred CCCCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEe--CCC--ch-hhh
Q 009072 144 KPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWD--TPT--PT-IWQ 218 (544)
Q Consensus 144 ~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~--~s~--~~-~~~ 218 (544)
+|..-.+++.++...+.+.. +. ..+.++++||+|.||||++..++...+ .+.-+. ..+ +. +|.
T Consensus 9 ~p~~~~~~~~R~rl~~~l~~----------~~-~~~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~l~~~d~~~~~f~~ 76 (903)
T PRK04841 9 RPVRLHNTVVRERLLAKLSG----------AN-NYRLVLVTSPAGYGKTTLISQWAAGKN-NLGWYSLDESDNQPERFAS 76 (903)
T ss_pred CCCCccccCcchHHHHHHhc----------cc-CCCeEEEECCCCCCHHHHHHHHHHhCC-CeEEEecCcccCCHHHHHH
Confidence 56777888888877766642 11 127899999999999999999988777 543222 222 11 222
Q ss_pred hhhhcc---ccCc-----------ccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHH
Q 009072 219 EYMHNC---KTGL-----------EYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQC 284 (544)
Q Consensus 219 e~l~~~---~~g~-----------~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~ 284 (544)
..+..+ ..+. ........+..++..... ...|.+|+|||++.+.... +.+.
T Consensus 77 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----------~~~~~~lvlDD~h~~~~~~----~~~~ 141 (903)
T PRK04841 77 YLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELAD-----------WHQPLYLVIDDYHLITNPE----IHEA 141 (903)
T ss_pred HHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhc-----------CCCCEEEEEeCcCcCCChH----HHHH
Confidence 222211 0010 000111122333333321 1458999999999986432 2234
Q ss_pred HHHHHhcCCCcEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEec--CCCHHHHHHHHHHHHHHhCCCCCHHHHH
Q 009072 285 LLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALN--PITNGSIKRTLSKICRQEQYSLSTEQID 362 (544)
Q Consensus 285 L~~~~~~~~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~--p~s~~~i~~~L~~i~~~e~~~i~~~~l~ 362 (544)
|..+++..+....+|++..... + + .+..+.-+.++..|... +++.+++..++... .|..++++.+.
T Consensus 142 l~~l~~~~~~~~~lv~~sR~~~---~-----~-~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~---~~~~~~~~~~~ 209 (903)
T PRK04841 142 MRFFLRHQPENLTLVVLSRNLP---P-----L-GIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQR---LSSPIEAAESS 209 (903)
T ss_pred HHHHHHhCCCCeEEEEEeCCCC---C-----C-chHhHHhcCcceecCHHhCCCCHHHHHHHHHhc---cCCCCCHHHHH
Confidence 5555555433333333332210 0 1 01111111123334444 88999999988754 45678999999
Q ss_pred HHHHHcCCcHHHH
Q 009072 363 LVAQASGGDIRQA 375 (544)
Q Consensus 363 ~Ia~~s~GDiR~a 375 (544)
.|.+.++|.+-..
T Consensus 210 ~l~~~t~Gwp~~l 222 (903)
T PRK04841 210 RLCDDVEGWATAL 222 (903)
T ss_pred HHHHHhCChHHHH
Confidence 9999999998553
No 232
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=98.22 E-value=1.1e-06 Score=81.24 Aligned_cols=71 Identities=14% Similarity=0.209 Sum_probs=38.9
Q ss_pred CceEEEEecCCCCCchhHHHHHHHHHHHHHhcCCCcEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHH
Q 009072 260 SSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNG 339 (544)
Q Consensus 260 ~~~vIlIDEid~l~~~~~~~~~~~~L~~~~~~~~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~ 339 (544)
.+.+|+|||+-.|--.. ..+.+++..+++ +..|+|.++-... ....+..+.++..+.++...+-+.+
T Consensus 95 ~~~liviDEIG~mEl~~--~~F~~~v~~~l~-s~~~vi~vv~~~~----------~~~~l~~i~~~~~~~i~~vt~~NRd 161 (168)
T PF03266_consen 95 SSDLIVIDEIGKMELKS--PGFREAVEKLLD-SNKPVIGVVHKRS----------DNPFLEEIKRRPDVKIFEVTEENRD 161 (168)
T ss_dssp CCHEEEE---STTCCC---CHHHHHHHHHHC-TTSEEEEE--SS------------SCCHHHHHTTTTSEEEE--TTTCC
T ss_pred CCCEEEEeccchhhhcC--HHHHHHHHHHHc-CCCcEEEEEecCC----------CcHHHHHHHhCCCcEEEEeChhHHh
Confidence 35699999998874432 345667778887 5556665553210 1123456666666888888887766
Q ss_pred HHHH
Q 009072 340 SIKR 343 (544)
Q Consensus 340 ~i~~ 343 (544)
.+..
T Consensus 162 ~l~~ 165 (168)
T PF03266_consen 162 ALPE 165 (168)
T ss_dssp CHHH
T ss_pred hHhh
Confidence 6544
No 233
>PHA02774 E1; Provisional
Probab=98.17 E-value=2.3e-05 Score=84.25 Aligned_cols=36 Identities=22% Similarity=0.320 Sum_probs=30.7
Q ss_pred CCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 009072 174 DKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEW 209 (544)
Q Consensus 174 g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei 209 (544)
|.+..+.++|+||||+|||+++.+|++.++..++.+
T Consensus 430 ~~PKknciv~~GPP~TGKS~fa~sL~~~L~G~vi~f 465 (613)
T PHA02774 430 GIPKKNCLVIYGPPDTGKSMFCMSLIKFLKGKVISF 465 (613)
T ss_pred cCCcccEEEEECCCCCCHHHHHHHHHHHhCCCEEEE
Confidence 555457999999999999999999999998777653
No 234
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.17 E-value=1.5e-05 Score=78.87 Aligned_cols=35 Identities=34% Similarity=0.493 Sum_probs=31.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeCCC
Q 009072 179 NVLVITGQAGVGKTATVRQIASHL---GARLYEWDTPT 213 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~el---g~~viei~~s~ 213 (544)
..++|+||||+|||.+|-++++++ |..++.+..++
T Consensus 106 ~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~e 143 (254)
T COG1484 106 ENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPD 143 (254)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence 789999999999999999999987 77888777665
No 235
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=98.16 E-value=9e-06 Score=69.35 Aligned_cols=23 Identities=30% Similarity=0.567 Sum_probs=21.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhC
Q 009072 181 LVITGQAGVGKTATVRQIASHLG 203 (544)
Q Consensus 181 lLL~GPpG~GKTtla~~lA~elg 203 (544)
+.|+||||+|||++++.||+.+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 47999999999999999998875
No 236
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=2.1e-05 Score=88.61 Aligned_cols=121 Identities=20% Similarity=0.296 Sum_probs=75.5
Q ss_pred hccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhC---CeEEEEeCCCchhhhhhhhc-ccc
Q 009072 151 LAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLG---ARLYEWDTPTPTIWQEYMHN-CKT 226 (544)
Q Consensus 151 Lv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg---~~viei~~s~~~~~~e~l~~-~~~ 226 (544)
++|+++.+..|...+...........+.-.++|.||.|+|||-+|++||..+- -.++.++-+. |.+ +.. +..
T Consensus 564 V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse---~~e-vskligs 639 (898)
T KOG1051|consen 564 VIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSE---FQE-VSKLIGS 639 (898)
T ss_pred ccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhh---hhh-hhhccCC
Confidence 67888888888888877665332222346899999999999999999999872 2456665443 222 111 111
Q ss_pred CcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHHHHHhcCC
Q 009072 227 GLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTH 293 (544)
Q Consensus 227 g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~~~~~~~ 293 (544)
..+|... .....+.+.+++ .+..|||||||+.... .+++.|+++++.++
T Consensus 640 p~gyvG~-e~gg~Lteavrr------------rP~sVVLfdeIEkAh~-----~v~n~llq~lD~Gr 688 (898)
T KOG1051|consen 640 PPGYVGK-EEGGQLTEAVKR------------RPYSVVLFEEIEKAHP-----DVLNILLQLLDRGR 688 (898)
T ss_pred Ccccccc-hhHHHHHHHHhc------------CCceEEEEechhhcCH-----HHHHHHHHHHhcCc
Confidence 1122211 112233333332 3468999999998643 45667888887754
No 237
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.11 E-value=2e-05 Score=72.89 Aligned_cols=58 Identities=17% Similarity=0.220 Sum_probs=43.6
Q ss_pred hccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeCCCc
Q 009072 151 LAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTPTP 214 (544)
Q Consensus 151 Lv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~el---g~~viei~~s~~ 214 (544)
|+|.....+++.+.++.... .+ ..+||+|++||||+.+|+++-+.. +.+++.++++..
T Consensus 1 liG~s~~m~~~~~~~~~~a~-----~~-~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~ 61 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAAS-----SD-LPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAAL 61 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTT-----ST-S-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS
T ss_pred CEeCCHHHHHHHHHHHHHhC-----CC-CCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhh
Confidence 46777788888888877643 12 579999999999999999998864 468999998764
No 238
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=98.10 E-value=0.00026 Score=74.86 Aligned_cols=211 Identities=15% Similarity=0.211 Sum_probs=120.1
Q ss_pred CcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeCCCchh-hhhh-h
Q 009072 147 SLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTPTPTI-WQEY-M 221 (544)
Q Consensus 147 ~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~el---g~~viei~~s~~~~-~~e~-l 221 (544)
...+|+|+....++|++.+...-. . .-.+||+|++||||-.+|++|-+.- +.+++.+|+..... ..+. +
T Consensus 139 ~~~~liG~S~am~~l~~~i~kvA~----s--~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l~ESEL 212 (464)
T COG2204 139 LGGELVGESPAMQQLRRLIAKVAP----S--DASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENLLESEL 212 (464)
T ss_pred ccCCceecCHHHHHHHHHHHHHhC----C--CCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHHHHHHh
Confidence 567899999999999998877532 1 1469999999999999999998775 56899999865321 1000 1
Q ss_pred hccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHHHHHhcCCC-------
Q 009072 222 HNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHI------- 294 (544)
Q Consensus 222 ~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~~~~~~~~------- 294 (544)
..-..|...... .++...+ ..-....||+|||-.|.-. ++.-|+..++....
T Consensus 213 FGhekGAFTGA~----------~~r~G~f------E~A~GGTLfLDEI~~mpl~-----~Q~kLLRvLqe~~~~rvG~~~ 271 (464)
T COG2204 213 FGHEKGAFTGAI----------TRRIGRF------EQANGGTLFLDEIGEMPLE-----LQVKLLRVLQEREFERVGGNK 271 (464)
T ss_pred hcccccCcCCcc----------cccCcce------eEcCCceEEeeccccCCHH-----HHHHHHHHHHcCeeEecCCCc
Confidence 000111000000 0000000 0112458999999988642 33345555554332
Q ss_pred ----cEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCH--HHHH----HHHHHHHHHhCC---CCCHHHH
Q 009072 295 ----PTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITN--GSIK----RTLSKICRQEQY---SLSTEQI 361 (544)
Q Consensus 295 ----piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~--~~i~----~~L~~i~~~e~~---~i~~~~l 361 (544)
.+=+|+++...... -.....+ -..+..|.....|+++|+-. ++|- .+|.+.+...+. .++++++
T Consensus 272 ~i~vdvRiIaaT~~dL~~-~v~~G~F--ReDLyyRLnV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~ 348 (464)
T COG2204 272 PIKVDVRIIAATNRDLEE-EVAAGRF--REDLYYRLNVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEAL 348 (464)
T ss_pred ccceeeEEEeecCcCHHH-HHHcCCc--HHHHHhhhccceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHHH
Confidence 22345444211000 0000001 12344444455666666632 3333 344444444443 5889999
Q ss_pred HHHHHH-cCCcHHHHHHHHHHhccCCC
Q 009072 362 DLVAQA-SGGDIRQAITSLQFSSLKQD 387 (544)
Q Consensus 362 ~~Ia~~-s~GDiR~aIn~Lq~~~~~~~ 387 (544)
..|... --|++|..-|.++.++....
T Consensus 349 ~~L~~y~WPGNVREL~N~ver~~il~~ 375 (464)
T COG2204 349 AALLAYDWPGNVRELENVVERAVILSE 375 (464)
T ss_pred HHHHhCCCChHHHHHHHHHHHHHhcCC
Confidence 998876 46999999999999987543
No 239
>PHA02624 large T antigen; Provisional
Probab=98.06 E-value=2.7e-05 Score=84.01 Aligned_cols=41 Identities=15% Similarity=0.231 Sum_probs=36.4
Q ss_pred CCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCCc
Q 009072 174 DKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTP 214 (544)
Q Consensus 174 g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~~ 214 (544)
|.+.++.++|+||||+||||++.+|++.+|..++.+|.|..
T Consensus 427 giPKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt~ 467 (647)
T PHA02624 427 NVPKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPPD 467 (647)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCcc
Confidence 66666899999999999999999999999888888987764
No 240
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.06 E-value=9.3e-05 Score=79.53 Aligned_cols=211 Identities=12% Similarity=0.199 Sum_probs=114.4
Q ss_pred CcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeCCCchhhhhhhhc
Q 009072 147 SLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTPTPTIWQEYMHN 223 (544)
Q Consensus 147 ~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~el---g~~viei~~s~~~~~~e~l~~ 223 (544)
.+.++++.....+++...+..... . ...++|+|++|+||+++|+.+.... +.+++.+++..... +.+..
T Consensus 137 ~~~~lig~s~~~~~l~~~i~~~a~----~--~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~--~~~~~ 208 (445)
T TIGR02915 137 ALRGLITSSPGMQKICRTIEKIAP----S--DITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPE--NLLES 208 (445)
T ss_pred cccceeecCHHHHHHHHHHHHHhC----C--CCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCCh--HHHHH
Confidence 445678888888888877765321 1 1468899999999999999998765 45788888765311 00000
Q ss_pred cccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHHHHHhcCC----------
Q 009072 224 CKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTH---------- 293 (544)
Q Consensus 224 ~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~~~~~~~---------- 293 (544)
...|..... |-...... .... ......+|+|||++.++.. ++..|..+++...
T Consensus 209 ~lfg~~~~~-------~~~~~~~~----~g~~-~~a~~gtl~l~~i~~l~~~-----~q~~l~~~l~~~~~~~~~~~~~~ 271 (445)
T TIGR02915 209 ELFGYEKGA-------FTGAVKQT----LGKI-EYAHGGTLFLDEIGDLPLN-----LQAKLLRFLQERVIERLGGREEI 271 (445)
T ss_pred HhcCCCCCC-------cCCCccCC----CCce-eECCCCEEEEechhhCCHH-----HHHHHHHHHhhCeEEeCCCCcee
Confidence 000100000 00000000 0000 0122458999999998753 3344555554432
Q ss_pred -CcEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCH--HHHHHHHHHH----HHHhC---CCCCHHHHHH
Q 009072 294 -IPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITN--GSIKRTLSKI----CRQEQ---YSLSTEQIDL 363 (544)
Q Consensus 294 -~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~--~~i~~~L~~i----~~~e~---~~i~~~~l~~ 363 (544)
..+-+|+++...... ......+ ...+..+.....|.++|+.. +++..++... +...+ ..++++++..
T Consensus 272 ~~~~rii~~~~~~l~~-~~~~~~~--~~~L~~~l~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~ 348 (445)
T TIGR02915 272 PVDVRIVCATNQDLKR-MIAEGTF--REDLFYRIAEISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRA 348 (445)
T ss_pred eeceEEEEecCCCHHH-HHHcCCc--cHHHHHHhccceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHH
Confidence 123344443211000 0000001 12233444456788887743 3444444433 33333 3589999999
Q ss_pred HHHHc-CCcHHHHHHHHHHhccC
Q 009072 364 VAQAS-GGDIRQAITSLQFSSLK 385 (544)
Q Consensus 364 Ia~~s-~GDiR~aIn~Lq~~~~~ 385 (544)
|.... .||+|..-|.++.++..
T Consensus 349 L~~~~wpgNvreL~~~i~~a~~~ 371 (445)
T TIGR02915 349 LEAHAWPGNVRELENKVKRAVIM 371 (445)
T ss_pred HHhCCCCChHHHHHHHHHHHHHh
Confidence 98875 79999999999988764
No 241
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.05 E-value=3.7e-05 Score=69.87 Aligned_cols=34 Identities=26% Similarity=0.471 Sum_probs=27.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeCCC
Q 009072 180 VLVITGQAGVGKTATVRQIASHL---GARLYEWDTPT 213 (544)
Q Consensus 180 ~lLL~GPpG~GKTtla~~lA~el---g~~viei~~s~ 213 (544)
+++|+||||+|||+++..++..+ +..++.+....
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~ 37 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEE 37 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCc
Confidence 37899999999999999999887 56666665543
No 242
>PHA00729 NTP-binding motif containing protein
Probab=98.02 E-value=5.7e-05 Score=72.63 Aligned_cols=30 Identities=30% Similarity=0.330 Sum_probs=25.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCeEEE
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLGARLYE 208 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg~~vie 208 (544)
..++|+||||+||||+|.++|++++..+..
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~~~l~~ 47 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVFWKLNN 47 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhhccc
Confidence 579999999999999999999998754433
No 243
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=98.02 E-value=0.00033 Score=68.96 Aligned_cols=193 Identities=15% Similarity=0.181 Sum_probs=104.8
Q ss_pred hccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCCchhhhhhhhccccCccc
Q 009072 151 LAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIWQEYMHNCKTGLEY 230 (544)
Q Consensus 151 Lv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~~~~~~e~l~~~~~g~~~ 230 (544)
|.|+.-.++.|...++.....+..+.| -.|=|+|+|||||...++.||+.+--.-. ..+-...+ + + ......
T Consensus 84 lfGQHla~~~Vv~alk~~~~n~~p~KP-LvLSfHG~tGTGKN~Va~iiA~n~~~~Gl--~S~~V~~f---v-a-t~hFP~ 155 (344)
T KOG2170|consen 84 LFGQHLAKQLVVNALKSHWANPNPRKP-LVLSFHGWTGTGKNYVAEIIAENLYRGGL--RSPFVHHF---V-A-TLHFPH 155 (344)
T ss_pred hhchHHHHHHHHHHHHHHhcCCCCCCC-eEEEecCCCCCchhHHHHHHHHHHHhccc--cchhHHHh---h-h-hccCCC
Confidence 456666666677777766654332222 46668999999999999999998621100 00000000 0 0 000000
Q ss_pred ccch----HHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHHHHHhcC--------CCcEEE
Q 009072 231 TSKL----DEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRST--------HIPTAV 298 (544)
Q Consensus 231 ~s~~----~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~~~~~~--------~~piIi 298 (544)
.+.. .++.+.+...-.. -.+.+.|+||+|.|.. .+.+.|..+++.. +..++|
T Consensus 156 ~~~ie~Yk~eL~~~v~~~v~~-----------C~rslFIFDE~DKmp~-----gLld~lkpfLdyyp~v~gv~frkaIFI 219 (344)
T KOG2170|consen 156 ASKIEDYKEELKNRVRGTVQA-----------CQRSLFIFDEVDKLPP-----GLLDVLKPFLDYYPQVSGVDFRKAIFI 219 (344)
T ss_pred hHHHHHHHHHHHHHHHHHHHh-----------cCCceEEechhhhcCH-----hHHHHHhhhhccccccccccccceEEE
Confidence 0111 1222222211111 2356999999999864 4556666666532 123555
Q ss_pred EEccCCCCCCCCc-----------cccchHHHHHHHh-------------------hcCceeEEecCCCHHHHHHHHHHH
Q 009072 299 VLTECGKADSVDS-----------TAQSFEELQSILV-------------------DAGARKVALNPITNGSIKRTLSKI 348 (544)
Q Consensus 299 I~t~~~~~~~~d~-----------~~~~l~~l~~ll~-------------------r~~~~~I~f~p~s~~~i~~~L~~i 348 (544)
+.++......... ..-.+..+.+.+. ..-...|.|-|+....++..++.-
T Consensus 220 fLSN~gg~eI~~~aL~~~~~g~~re~~~l~~~E~~L~~~~~n~~~~Gl~~S~li~~~lid~fIPFLPLek~hV~~C~r~e 299 (344)
T KOG2170|consen 220 FLSNAGGSEIARIALENARNGKPREQLRLKSFEPALMQSAFNEKAGGLVHSRLISNNLIDHFIPFLPLEKRHVRSCIRAE 299 (344)
T ss_pred EEcCCcchHHHHHHHHHHHcCCCcccchhhhhhHHHHHhhhccccccccccccchhhHHhhccCcCcccHHHHHHHHHHH
Confidence 5665443221100 0001111111110 001346889999999999999999
Q ss_pred HHHhCCCCCHHHHHHHHHH
Q 009072 349 CRQEQYSLSTEQIDLVAQA 367 (544)
Q Consensus 349 ~~~e~~~i~~~~l~~Ia~~ 367 (544)
+.++|...+.+.++.+++.
T Consensus 300 l~~rg~~~d~~~~erva~~ 318 (344)
T KOG2170|consen 300 LRKRGLAPDQDFVERVANS 318 (344)
T ss_pred HHhcccccchHHHHHHHHh
Confidence 9999988888888887653
No 244
>PRK15115 response regulator GlrR; Provisional
Probab=98.00 E-value=0.00038 Score=74.81 Aligned_cols=206 Identities=12% Similarity=0.170 Sum_probs=109.0
Q ss_pred hhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeCCCchhhhhhhhcccc
Q 009072 150 ELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTPTPTIWQEYMHNCKT 226 (544)
Q Consensus 150 dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~el---g~~viei~~s~~~~~~e~l~~~~~ 226 (544)
++++......++..-+..... . ...++|+|++|+|||++|+.+.+.. +.+++.+++...... .+.....
T Consensus 135 ~lig~s~~~~~~~~~~~~~a~---~---~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~--~~~~~lf 206 (444)
T PRK15115 135 AIVTRSPLMLRLLEQARMVAQ---S---DVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQ--LLESELF 206 (444)
T ss_pred cccccCHHHHHHHHHHHhhcc---C---CCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHH--HHHHHhc
Confidence 456665555554444433211 1 1469999999999999999998874 467888887642110 0000000
Q ss_pred CcccccchHHHHHHHHHHHhhcCCCCCCCC--CCCCceEEEEecCCCCCchhHHHHHHHHHHHHHhcCCC----------
Q 009072 227 GLEYTSKLDEFENFVERIRRYGSTSPSIPG--ESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHI---------- 294 (544)
Q Consensus 227 g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~--~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~~~~~~~~---------- 294 (544)
|.... .+........| ......+|+|||++.++.. .+..|..+++....
T Consensus 207 g~~~~--------------~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~~~-----~q~~L~~~l~~~~~~~~g~~~~~~ 267 (444)
T PRK15115 207 GHARG--------------AFTGAVSNREGLFQAAEGGTLFLDEIGDMPAP-----LQVKLLRVLQERKVRPLGSNRDID 267 (444)
T ss_pred CCCcC--------------CCCCCccCCCCcEEECCCCEEEEEccccCCHH-----HHHHHHHHHhhCCEEeCCCCceee
Confidence 00000 00000000000 0122458999999998753 33445555554321
Q ss_pred -cEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCH--HHHHHHHHHHHH----HhC---CCCCHHHHHHH
Q 009072 295 -PTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITN--GSIKRTLSKICR----QEQ---YSLSTEQIDLV 364 (544)
Q Consensus 295 -piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~--~~i~~~L~~i~~----~e~---~~i~~~~l~~I 364 (544)
.+-+|+++...... ......+ ...+..+.....|.++|+.. +++..++...+. ..+ ..+++++++.|
T Consensus 268 ~~~rii~~~~~~l~~-~~~~~~f--~~~l~~~l~~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L 344 (444)
T PRK15115 268 IDVRIISATHRDLPK-AMARGEF--REDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRL 344 (444)
T ss_pred eeEEEEEeCCCCHHH-HHHcCCc--cHHHHHhhceeeecCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHH
Confidence 23444443211000 0000000 02233333355677777743 345444444433 223 24899999999
Q ss_pred HHHc-CCcHHHHHHHHHHhccC
Q 009072 365 AQAS-GGDIRQAITSLQFSSLK 385 (544)
Q Consensus 365 a~~s-~GDiR~aIn~Lq~~~~~ 385 (544)
.... .||+|...|.++.++..
T Consensus 345 ~~~~WpgNvreL~~~i~~~~~~ 366 (444)
T PRK15115 345 MTASWPGNVRQLVNVIEQCVAL 366 (444)
T ss_pred HhCCCCChHHHHHHHHHHHHHh
Confidence 9988 89999999999988753
No 245
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.00 E-value=0.0002 Score=71.28 Aligned_cols=180 Identities=11% Similarity=0.209 Sum_probs=94.0
Q ss_pred chhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCCchhhhhhhhccccCc
Q 009072 149 EELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIWQEYMHNCKTGL 228 (544)
Q Consensus 149 ~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~~~~~~e~l~~~~~g~ 228 (544)
-+|+.-++.++.+.+.-+- +. . |+.++||.|.+|+||+++++..|--.+++++++.... +.
T Consensus 8 m~lVlf~~ai~hi~ri~Rv-L~----~-~~Gh~LLvG~~GsGr~sl~rLaa~i~~~~~~~i~~~~-------------~y 68 (268)
T PF12780_consen 8 MNLVLFDEAIEHIARISRV-LS----Q-PRGHALLVGVGGSGRQSLARLAAFICGYEVFQIEITK-------------GY 68 (268)
T ss_dssp ------HHHHHHHHHHHHH-HC----S-TTEEEEEECTTTSCHHHHHHHHHHHTTEEEE-TTTST-------------TT
T ss_pred cceeeHHHHHHHHHHHHHH-Hc----C-CCCCeEEecCCCccHHHHHHHHHHHhccceEEEEeeC-------------Cc
Confidence 3567777777777665433 22 2 3378999999999999999999999999998876432 11
Q ss_pred ccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCC--------------------chhHHHHHHHHHHHH
Q 009072 229 EYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTN--------------------GRTAFERLRQCLLLL 288 (544)
Q Consensus 229 ~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~--------------------~~~~~~~~~~~L~~~ 288 (544)
+.....+.++.++.++. ..+++.+++|+|-+... ..+.+..+.+.+...
T Consensus 69 ~~~~f~~dLk~~~~~ag-----------~~~~~~vfll~d~qi~~~~fLe~in~LL~sGeip~LF~~eE~~~i~~~l~~~ 137 (268)
T PF12780_consen 69 SIKDFKEDLKKALQKAG-----------IKGKPTVFLLTDSQIVDESFLEDINSLLSSGEIPNLFTKEELDNIISSLREE 137 (268)
T ss_dssp HHHHHHHHHHHHHHHHH-----------CS-S-EEEEEECCCSSSCHHHHHHHHHHHCSS-TTTS-TCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHh-----------ccCCCeEEEecCcccchHhHHHHHHHHHhCCCCCCCccHHHHHHHHHHhHHH
Confidence 11111123334444332 23568899998765432 222233333333322
Q ss_pred Hh-----------------cCC--CcEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHH
Q 009072 289 VR-----------------STH--IPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKIC 349 (544)
Q Consensus 289 ~~-----------------~~~--~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~ 349 (544)
.. .-+ ..+|++.+..+ +....+....+++++. |.+.-|.+-+.+.+..+-.+.+
T Consensus 138 ~~~~~~~~~~~~~~~~F~~rvr~nLHivl~~sp~~-----~~~r~~~~~fPaL~~~--ctIdW~~~W~~eaL~~Va~~~l 210 (268)
T PF12780_consen 138 AKAEGISDSRESLYEFFIERVRKNLHIVLCMSPVG-----PNFRDRCRSFPALVNC--CTIDWFDPWPEEALLSVANKFL 210 (268)
T ss_dssp HHHCT--SSHHHHHHHHHHHHCCCEEEEEEESTTT-----TCCCHHHHHHCCHHHH--SEEEEEES--HHHHHHHHHHHC
T ss_pred HHHcCCCCchHHHHHHHHHHHHhheeEEEEECCCC-----chHHHHHHhCcchhcc--cEEEeCCcCCHHHHHHHHHHHH
Confidence 11 111 13555554322 2223344555666664 8888999999998888877765
Q ss_pred HHhCCCCCHHHHHHHHH
Q 009072 350 RQEQYSLSTEQIDLVAQ 366 (544)
Q Consensus 350 ~~e~~~i~~~~l~~Ia~ 366 (544)
..... ++++..+.+++
T Consensus 211 ~~~~~-~~~~~~~~l~~ 226 (268)
T PF12780_consen 211 SDIEL-LSEELKKSLAE 226 (268)
T ss_dssp CHHHT-SS--HHHHHHH
T ss_pred Hhhcc-cchhHHHHHHH
Confidence 44221 23444444443
No 246
>PTZ00202 tuzin; Provisional
Probab=97.99 E-value=0.00037 Score=72.61 Aligned_cols=64 Identities=19% Similarity=0.237 Sum_probs=51.6
Q ss_pred CCCCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCC
Q 009072 144 KPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTP 212 (544)
Q Consensus 144 ~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s 212 (544)
.|....+++|++....+|...|.... ...+ ++++|+||+||||||+++.++..++...+..|..
T Consensus 257 lPa~~~~FVGReaEla~Lr~VL~~~d----~~~p-rivvLtG~~G~GKTTLlR~~~~~l~~~qL~vNpr 320 (550)
T PTZ00202 257 APAVIRQFVSREAEESWVRQVLRRLD----TAHP-RIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVDVR 320 (550)
T ss_pred CCCCccCCCCcHHHHHHHHHHHhccC----CCCc-eEEEEECCCCCCHHHHHHHHHhcCCceEEEECCC
Confidence 57788899999999999988886421 2223 6999999999999999999999998666655554
No 247
>PF14516 AAA_35: AAA-like domain
Probab=97.98 E-value=0.00054 Score=70.60 Aligned_cols=179 Identities=15% Similarity=0.138 Sum_probs=102.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeCCCc-----hhh----hhhhhccccCcccc-----------cchH
Q 009072 179 NVLVITGQAGVGKTATVRQIASHL---GARLYEWDTPTP-----TIW----QEYMHNCKTGLEYT-----------SKLD 235 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~el---g~~viei~~s~~-----~~~----~e~l~~~~~g~~~~-----------s~~~ 235 (544)
..+.+.||..+|||++...+++.+ |+..+.++-... ..+ ...+..+...+... ....
T Consensus 32 ~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~ 111 (331)
T PF14516_consen 32 SYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIGSKI 111 (331)
T ss_pred CEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcCChh
Confidence 689999999999999998887665 777776654431 111 11111111111110 1122
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCch-hHHHHHHHHHHHHHhcCCC-----cE-EEEEccCCCCCC
Q 009072 236 EFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGR-TAFERLRQCLLLLVRSTHI-----PT-AVVLTECGKADS 308 (544)
Q Consensus 236 ~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~-~~~~~~~~~L~~~~~~~~~-----pi-IiI~t~~~~~~~ 308 (544)
.+..++++.- . ....+|.||+|||+|.+... .....+...|+.+.+.... .+ ++++..+.....
T Consensus 112 ~~~~~~~~~l-l--------~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~~~~L~li~~~~t~~~~~ 182 (331)
T PF14516_consen 112 SCTEYFEEYL-L--------KQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPIWQKLRLILAGSTEDYII 182 (331)
T ss_pred hHHHHHHHHH-H--------hcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCcccceEEEEEecCcccccc
Confidence 3344444321 0 01257899999999998662 2334566666666654331 12 333333221111
Q ss_pred CCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcH---HHHHHHH
Q 009072 309 VDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDI---RQAITSL 379 (544)
Q Consensus 309 ~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~l~~Ia~~s~GDi---R~aIn~L 379 (544)
.+.. . +.++ . ...|.+++.+.+++...+++ .+...++..++.|...++|-. +.++..+
T Consensus 183 ~~~~-~------SPFN-I-g~~i~L~~Ft~~ev~~L~~~----~~~~~~~~~~~~l~~~tgGhP~Lv~~~~~~l 243 (331)
T PF14516_consen 183 LDIN-Q------SPFN-I-GQPIELPDFTPEEVQELAQR----YGLEFSQEQLEQLMDWTGGHPYLVQKACYLL 243 (331)
T ss_pred cCCC-C------CCcc-c-ccceeCCCCCHHHHHHHHHh----hhccCCHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 1111 1 1111 1 44788999999999887664 466788888999999999985 4444444
No 248
>PRK04132 replication factor C small subunit; Provisional
Probab=97.98 E-value=4e-06 Score=94.78 Aligned_cols=51 Identities=29% Similarity=0.651 Sum_probs=44.9
Q ss_pred CCCcccccCCCCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHH
Q 009072 136 QQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTAT 194 (544)
Q Consensus 136 ~~lW~eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtl 194 (544)
..+|++||||++|+|++|++..++.|+.+++. +.. ++++|+||||+||+.+
T Consensus 6 ~~~~~~k~RP~~f~dIiGqe~i~~~Lk~~i~~------~~i--~h~l~~g~~g~~~cl~ 56 (846)
T PRK04132 6 EKPWVEKYRPQRLDDIVGQEHIVKRLKHYVKT------GSM--PHLLFAGPPGVGKCLT 56 (846)
T ss_pred cccHHHhhCCCCHHHhcCcHHHHHHHHHHHHc------CCC--CeEEEECCCCCCcccc
Confidence 46899999999999999999999999999976 555 3578999999999754
No 249
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.97 E-value=8.3e-06 Score=70.85 Aligned_cols=31 Identities=32% Similarity=0.652 Sum_probs=28.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCeEEEEe
Q 009072 180 VLVITGQAGVGKTATVRQIASHLGARLYEWD 210 (544)
Q Consensus 180 ~lLL~GPpG~GKTtla~~lA~elg~~viei~ 210 (544)
.++|+||||+||||+|+.||+.+|+.++...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~~~~i~~d 31 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLGFPVISMD 31 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTCEEEEEH
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCeEEEec
Confidence 4799999999999999999999999988765
No 250
>TIGR01128 holA DNA polymerase III, delta subunit. subunit around DNA forming a DNA sliding clamp.
Probab=97.96 E-value=0.00027 Score=71.71 Aligned_cols=149 Identities=11% Similarity=0.109 Sum_probs=97.6
Q ss_pred CceEEEEecCCCCCchhHHHHHHHHHHHHHhcCCCcEEEEEccCCCCCCCCccccchHHHHHHHhh-cCceeEEecCCCH
Q 009072 260 SSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVD-AGARKVALNPITN 338 (544)
Q Consensus 260 ~~~vIlIDEid~l~~~~~~~~~~~~L~~~~~~~~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r-~~~~~I~f~p~s~ 338 (544)
.+.|++|++++.+..... .+.|.++++..+...++|+..... +. ...+...+.. .++..+.|.+++.
T Consensus 46 ~~kliii~~~~~~~~~~~----~~~L~~~l~~~~~~~~~i~~~~~~----~~----~~~~~k~~~~~~~~~~i~~~~~~~ 113 (302)
T TIGR01128 46 ERRLVELRNPEGKPGAKG----LKALEEYLANPPPDTLLLIEAPKL----DK----RKKLTKWLKALKNAQIVECKTPKE 113 (302)
T ss_pred CCeEEEEECCCCCCCHHH----HHHHHHHHhcCCCCEEEEEecCCC----CH----hHHHHHHHHHhcCeeEEEecCCCH
Confidence 367999999998754322 345667776654444444433110 10 0111122221 1488999999999
Q ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHhccCCCCCccccccCCCCCCCCccCCCCCCccccccc
Q 009072 339 GSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIRQAITSLQFSSLKQDPMLNLSLSISKPNFPEEKADGHGGFSIQFGR 418 (544)
Q Consensus 339 ~~i~~~L~~i~~~e~~~i~~~~l~~Ia~~s~GDiR~aIn~Lq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 418 (544)
.++..++...+..+|+.+++++++.|+..++||++.+.|.|+-++.-.....- + .+........
T Consensus 114 ~~~~~~i~~~~~~~g~~i~~~a~~~l~~~~~~d~~~l~~el~KL~~~~~~~~I---------------t-~e~I~~~~~~ 177 (302)
T TIGR01128 114 QELPRWIQARLKKLGLRIDPDAVQLLAELVEGNLLAIAQELEKLALYAPDGKI---------------T-LEDVEEAVSD 177 (302)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCcHHHHHHHHHHHHHhhCCCCCC---------------C-HHHHHHHHhh
Confidence 99999999999999999999999999999999999999999877654211100 0 1111223344
Q ss_pred cccchhhHhhhhhhcccc
Q 009072 419 DETLSLFHALGKFLHNKR 436 (544)
Q Consensus 419 D~~l~lF~algkil~~Kr 436 (544)
+...++|..+..++.++.
T Consensus 178 ~~~~~if~l~dal~~~~~ 195 (302)
T TIGR01128 178 SARFNVFDLTDALLEGKA 195 (302)
T ss_pred hhcCCHHHHHHHHHCCCH
Confidence 455667777777776654
No 251
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=97.95 E-value=0.00053 Score=74.25 Aligned_cols=209 Identities=12% Similarity=0.154 Sum_probs=116.1
Q ss_pred CcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeCCCchhh--hhhh
Q 009072 147 SLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTPTPTIW--QEYM 221 (544)
Q Consensus 147 ~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~el---g~~viei~~s~~~~~--~e~l 221 (544)
.+.++++......++...+..... ....++|+|++|||||++|+++.... +.+++.+++...... ...+
T Consensus 136 ~~~~lig~s~~~~~l~~~~~~~~~------~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~~~~~l 209 (469)
T PRK10923 136 PTTDIIGEAPAMQDVFRIIGRLSR------SSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESEL 209 (469)
T ss_pred ccccceecCHHHHHHHHHHHHHhc------cCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHHHHHHh
Confidence 345788888888888777765432 12579999999999999999998875 467888887653210 0001
Q ss_pred hccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHHHHHhcCCC-------
Q 009072 222 HNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHI------- 294 (544)
Q Consensus 222 ~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~~~~~~~~------- 294 (544)
.....|..... ........ .......++|||++.+... ++..|..+++....
T Consensus 210 fg~~~g~~~~~---------------~~~~~g~~-~~a~~Gtl~l~~i~~l~~~-----~q~~L~~~l~~~~~~~~~~~~ 268 (469)
T PRK10923 210 FGHEKGAFTGA---------------NTIRQGRF-EQADGGTLFLDEIGDMPLD-----VQTRLLRVLADGQFYRVGGYA 268 (469)
T ss_pred cCCCCCCCCCC---------------CcCCCCCe-eECCCCEEEEeccccCCHH-----HHHHHHHHHhcCcEEeCCCCC
Confidence 00000000000 00000000 0112347899999998753 23345555554321
Q ss_pred ----cEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCH--HHHHHHHHHHHH----HhCC---CCCHHHH
Q 009072 295 ----PTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITN--GSIKRTLSKICR----QEQY---SLSTEQI 361 (544)
Q Consensus 295 ----piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~--~~i~~~L~~i~~----~e~~---~i~~~~l 361 (544)
.+-+|++++.... . ....-.....++.+.....|.++|+.. +++..++...+. ..+. .++++++
T Consensus 269 ~~~~~~rii~~~~~~l~--~-~~~~~~~~~~L~~~l~~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~ 345 (469)
T PRK10923 269 PVKVDVRIIAATHQNLE--Q-RVQEGKFREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETE 345 (469)
T ss_pred eEEeeEEEEEeCCCCHH--H-HHHcCCchHHHHHHhcceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHH
Confidence 1233443321100 0 000000113445554466788888744 445544444433 3232 4789999
Q ss_pred HHHHHH-cCCcHHHHHHHHHHhccC
Q 009072 362 DLVAQA-SGGDIRQAITSLQFSSLK 385 (544)
Q Consensus 362 ~~Ia~~-s~GDiR~aIn~Lq~~~~~ 385 (544)
..|... --|++|..-|.++.++..
T Consensus 346 ~~L~~~~wpgNv~eL~~~i~~~~~~ 370 (469)
T PRK10923 346 AALTRLAWPGNVRQLENTCRWLTVM 370 (469)
T ss_pred HHHHhCCCCChHHHHHHHHHHHHHh
Confidence 998877 469999999999888764
No 252
>PRK06585 holA DNA polymerase III subunit delta; Reviewed
Probab=97.94 E-value=0.00086 Score=69.52 Aligned_cols=200 Identities=12% Similarity=0.088 Sum_probs=121.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhC------CeEEEEeCCCchhhhhhhhccccCcccccchHHHHHHHHHHHhhcCCCC
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLG------ARLYEWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSP 252 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg------~~viei~~s~~~~~~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~ 252 (544)
+.+||||+-.......+..+.+.+. ++++.+.+.+ . ...+.++++.+...+.+
T Consensus 21 ~~yll~G~e~~li~~~~~~l~~~~~~~~~~~fn~~~~~~~e----------------~---~~~~~~~~~~~~t~slF-- 79 (343)
T PRK06585 21 RAVLLYGPDRGLVRERARRLAKSVVPDLDDPFAVVRLDGDD----------------L---DADPARLEDEANAISLF-- 79 (343)
T ss_pred eEEEEeCCchHHHHHHHHHHHHHhcCCCCCCcceeeccHHH----------------h---hcCHHHHHHHHhCCCCC--
Confidence 7999999999888888888877653 2222222111 0 00134566665544322
Q ss_pred CCCCCCCCceEEEEecCCCCCchhHHHHHHHHHHHHHhcCCCcEEEEEccCCCCCCCCccccchHHHHHHHhh-cCceeE
Q 009072 253 SIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVD-AGARKV 331 (544)
Q Consensus 253 ~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~~~~~~~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r-~~~~~I 331 (544)
..+.+|++.+.+. ...+.|..++.......++|+.... .+. -..+...+.. .....+
T Consensus 80 ------~~~rlViv~~~~~--------~~~~~L~~~l~~~~~~~~lil~~~~----~~~----~~kl~k~~~~~~~~~~v 137 (343)
T PRK06585 80 ------GGRRLIWVRAGSK--------NLAAALKALLESPPGDAFIVIEAGD----LKK----GSSLRKLFETAAYAAAI 137 (343)
T ss_pred ------CCceEEEEECCch--------hHHHHHHHHHcCCCCCcEEEEEcCC----CCc----ccHHHHHHhcCCCeeEE
Confidence 2356888885432 1223466666654333444443211 111 1122333321 124578
Q ss_pred EecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHhccCCCCCccccccCCCCCCCCccCCCCCC
Q 009072 332 ALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIRQAITSLQFSSLKQDPMLNLSLSISKPNFPEEKADGHGG 411 (544)
Q Consensus 332 ~f~p~s~~~i~~~L~~i~~~e~~~i~~~~l~~Ia~~s~GDiR~aIn~Lq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (544)
.|.+++..++..++..++...|+.+++++++.|++.++||++.+.+.|+-++.-....... + .+.
T Consensus 138 ~~~~~~~~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g~dl~~l~~EleKL~ly~~~~~~I--------------t-~ed 202 (343)
T PRK06585 138 PCYADDERDLARLIDDELAEAGLRITPDARALLVALLGGDRLASRNEIEKLALYAHGKGEI--------------T-LDD 202 (343)
T ss_pred ecCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCC--------------C-HHH
Confidence 9999999999999999999999999999999999999999999999998887642211000 0 111
Q ss_pred ccccccccccchhhHhhhhhhcccc
Q 009072 412 FSIQFGRDETLSLFHALGKFLHNKR 436 (544)
Q Consensus 412 ~~~~~~rD~~l~lF~algkil~~Kr 436 (544)
...+.+.....++|+-+..++..+.
T Consensus 203 V~~lv~~~~e~~if~l~dai~~~~~ 227 (343)
T PRK06585 203 VRAVVGDASALSLDDAADAALAGDL 227 (343)
T ss_pred HHHHhCCcccccHHHHHHHHHCCCH
Confidence 1233344455677877777776654
No 253
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=97.94 E-value=0.00032 Score=72.97 Aligned_cols=203 Identities=16% Similarity=0.191 Sum_probs=116.0
Q ss_pred CCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHH----hCCeEEEEeCCCchhh-hhh
Q 009072 146 RSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASH----LGARLYEWDTPTPTIW-QEY 220 (544)
Q Consensus 146 ~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~e----lg~~viei~~s~~~~~-~e~ 220 (544)
..+.+|+|.....+++++-++.... ...++|+.|++|+||+.+|+.+... .+.+++.+|+.....- .+.
T Consensus 75 ~~~~~LIG~~~~~~~~~eqik~~ap------~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~en~~~~ 148 (403)
T COG1221 75 EALDDLIGESPSLQELREQIKAYAP------SGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSENLQEA 148 (403)
T ss_pred hhhhhhhccCHHHHHHHHHHHhhCC------CCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCcCHHHH
Confidence 4677899999888888887776321 1267999999999999999988643 3568899998653210 000
Q ss_pred -hhcc----ccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHHHHHhcCCC-
Q 009072 221 -MHNC----KTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHI- 294 (544)
Q Consensus 221 -l~~~----~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~~~~~~~~- 294 (544)
+... ..|..... .-+++. -....+++||+..+... .+..|..+++++..
T Consensus 149 eLFG~~kGaftGa~~~k-----~Glfe~---------------A~GGtLfLDEI~~LP~~-----~Q~kLl~~le~g~~~ 203 (403)
T COG1221 149 ELFGHEKGAFTGAQGGK-----AGLFEQ---------------ANGGTLFLDEIHRLPPE-----GQEKLLRVLEEGEYR 203 (403)
T ss_pred HHhccccceeecccCCc-----Cchhee---------------cCCCEEehhhhhhCCHh-----HHHHHHHHHHcCceE
Confidence 0000 01100000 001111 12458999999988653 33456666665321
Q ss_pred ----------cEEEEEccCCCCCCCCccccchHHHH--HHHhhcCceeEEecCCCHH--HHHHHH----HHHHHHhCCCC
Q 009072 295 ----------PTAVVLTECGKADSVDSTAQSFEELQ--SILVDAGARKVALNPITNG--SIKRTL----SKICRQEQYSL 356 (544)
Q Consensus 295 ----------piIiI~t~~~~~~~~d~~~~~l~~l~--~ll~r~~~~~I~f~p~s~~--~i~~~L----~~i~~~e~~~i 356 (544)
.+-+||+++.. ... ..+. .+..|.-...|+++|+... ++...+ ...|.+.+..+
T Consensus 204 rvG~~~~~~~dVRli~AT~~~-----l~~---~~~~g~dl~~rl~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~ 275 (403)
T COG1221 204 RVGGSQPRPVDVRLICATTED-----LEE---AVLAGADLTRRLNILTITLPPLRERKEDILLLAEHFLKSEARRLGLPL 275 (403)
T ss_pred ecCCCCCcCCCceeeeccccC-----HHH---HHHhhcchhhhhcCceecCCChhhchhhHHHHHHHHHHHHHHHcCCCC
Confidence 23334433221 101 1112 3444444667888887543 333333 33444445433
Q ss_pred ---CHHHHHHHHHH-cCCcHHHHHHHHHHhccCCC
Q 009072 357 ---STEQIDLVAQA-SGGDIRQAITSLQFSSLKQD 387 (544)
Q Consensus 357 ---~~~~l~~Ia~~-s~GDiR~aIn~Lq~~~~~~~ 387 (544)
+++++..+... .-|+||..-|.+++.|....
T Consensus 276 ~~~~~~a~~~L~~y~~pGNirELkN~Ve~~~~~~~ 310 (403)
T COG1221 276 SVDSPEALRALLAYDWPGNIRELKNLVERAVAQAS 310 (403)
T ss_pred CCCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHHhc
Confidence 34556655544 57999999999999998643
No 254
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=97.94 E-value=0.00036 Score=77.30 Aligned_cols=32 Identities=34% Similarity=0.417 Sum_probs=27.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCC--eEEEEe
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLGA--RLYEWD 210 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg~--~viei~ 210 (544)
.++||.|+||+|||++|+.+++.+.. +++.+.
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~ 50 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELP 50 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecC
Confidence 68999999999999999999998764 366665
No 255
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=97.94 E-value=0.00077 Score=64.95 Aligned_cols=176 Identities=9% Similarity=0.067 Sum_probs=105.9
Q ss_pred CCCCccEEEEEcCCC-CcHHHHHHHHHHHhCCeEEE-EeCCCchhhhhhhhccccCcccccchHHHHHHHHHHHhhcCCC
Q 009072 174 DKFSTNVLVITGQAG-VGKTATVRQIASHLGARLYE-WDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTS 251 (544)
Q Consensus 174 g~~~~~~lLL~GPpG-~GKTtla~~lA~elg~~vie-i~~s~~~~~~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~ 251 (544)
++.. +..||.|..+ .||..++..+++.+...-++ -+.||.......-. ....+..-..++++++.+.+...+
T Consensus 12 ~kLs-hAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~--~~~~~~~I~IdqIReL~~~l~~~p--- 85 (263)
T PRK06581 12 NKLY-NSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETS--ATSNAKNISIEQIRKLQDFLSKTS--- 85 (263)
T ss_pred Ccch-heeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEecccc--ccccCCcccHHHHHHHHHHHhhCc---
Confidence 4554 8999999998 99999999998887443211 12233211100000 000011123466776666554332
Q ss_pred CCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHHHHHhcCCCcEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeE
Q 009072 252 PSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKV 331 (544)
Q Consensus 252 ~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~~~~~~~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I 331 (544)
..++.+|++|+++|.+...+ .++|++.+++++..+++|..+.. .-..++.+.+ ||..+
T Consensus 86 -----~~g~~KViII~~ae~mt~~A-----ANALLKtLEEPP~~t~fILit~~----------~~~LLpTIrS--RCq~i 143 (263)
T PRK06581 86 -----AISGYKVAIIYSAELMNLNA-----ANSCLKILEDAPKNSYIFLITSR----------AASIISTIRS--RCFKI 143 (263)
T ss_pred -----ccCCcEEEEEechHHhCHHH-----HHHHHHhhcCCCCCeEEEEEeCC----------hhhCchhHhh--ceEEE
Confidence 22467899999999987543 47899999998776666654321 1112344444 49999
Q ss_pred EecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHH
Q 009072 332 ALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIRQAITSLQ 380 (544)
Q Consensus 332 ~f~p~s~~~i~~~L~~i~~~e~~~i~~~~l~~Ia~~s~GDiR~aIn~Lq 380 (544)
.|..|.+..........+.. ..+...++.|.+...-|....+.-.|
T Consensus 144 ~~~~p~~~~~~e~~~~~~~p---~~~~~~l~~i~~~~~~d~~~w~~~~~ 189 (263)
T PRK06581 144 NVRSSILHAYNELYSQFIQP---IADNKTLDFINRFTTKDRELWLDFID 189 (263)
T ss_pred eCCCCCHHHHHHHHHHhccc---ccccHHHHHHHHHhhhhHHHHHHHHH
Confidence 99999998777776654433 23555577777776666555444333
No 256
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=97.92 E-value=7.7e-05 Score=66.64 Aligned_cols=46 Identities=22% Similarity=0.345 Sum_probs=33.6
Q ss_pred cChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhCC
Q 009072 153 VQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGA 204 (544)
Q Consensus 153 ~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg~ 204 (544)
|.....+++++-+...... ...++|+|++|+||+++|+.+....+.
T Consensus 2 G~S~~~~~l~~~l~~~a~~------~~pvli~GE~GtGK~~~A~~lh~~~~~ 47 (138)
T PF14532_consen 2 GKSPAMRRLRRQLERLAKS------SSPVLITGEPGTGKSLLARALHRYSGR 47 (138)
T ss_dssp -SCHHHHHHHHHHHHHHCS------SS-EEEECCTTSSHHHHHHCCHHTTTT
T ss_pred CCCHHHHHHHHHHHHHhCC------CCcEEEEcCCCCCHHHHHHHHHhhcCc
Confidence 4555667777777665431 156999999999999999999987654
No 257
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.92 E-value=0.00052 Score=71.78 Aligned_cols=171 Identities=13% Similarity=0.210 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHhhcCCC---CCCCccEEEEEcCCCCcHHHHHHHHHHHh-------CCeEEEEeCCCchhh-hhhhh--c
Q 009072 157 KVEEVRAWFEERLGDSK---DKFSTNVLVITGQAGVGKTATVRQIASHL-------GARLYEWDTPTPTIW-QEYMH--N 223 (544)
Q Consensus 157 ~~~~l~~wL~~~~~~~~---g~~~~~~lLL~GPpG~GKTtla~~lA~el-------g~~viei~~s~~~~~-~e~l~--~ 223 (544)
..+.+..++.+.+.... ....++.++|.||+|+||||++.-+|..+ |..+.-+..-..+.- .+.+. .
T Consensus 150 v~~~l~~~l~~~i~~~~~~~~~~~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a 229 (388)
T PRK12723 150 VRDSVIIYIAKTIKCSGSIIDNLKKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYG 229 (388)
T ss_pred HHHHHHHHHHHHhhccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHh
Confidence 44455555555443211 11223789999999999999999999865 345554444333311 01111 1
Q ss_pred cccCcc--cccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHHHHHhcCCCc--EEEE
Q 009072 224 CKTGLE--YTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIP--TAVV 299 (544)
Q Consensus 224 ~~~g~~--~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~~~~~~~~p--iIiI 299 (544)
...++. .......+...+... ....+||||++...... ... ...+..++.....| ++++
T Consensus 230 ~~lgvpv~~~~~~~~l~~~L~~~--------------~~~DlVLIDTaGr~~~~--~~~-l~el~~~l~~~~~~~e~~LV 292 (388)
T PRK12723 230 DIMGIPVKAIESFKDLKEEITQS--------------KDFDLVLVDTIGKSPKD--FMK-LAEMKELLNACGRDAEFHLA 292 (388)
T ss_pred hcCCcceEeeCcHHHHHHHHHHh--------------CCCCEEEEcCCCCCccC--HHH-HHHHHHHHHhcCCCCeEEEE
Confidence 111222 112223344443332 22459999999887532 111 22344444433222 4455
Q ss_pred EccCCCCCCCCccccchHHHHHHHhh---cCceeEEecCCCHHHHHHHHHHHHHHhCC
Q 009072 300 LTECGKADSVDSTAQSFEELQSILVD---AGARKVALNPITNGSIKRTLSKICRQEQY 354 (544)
Q Consensus 300 ~t~~~~~~~~d~~~~~l~~l~~ll~r---~~~~~I~f~p~s~~~i~~~L~~i~~~e~~ 354 (544)
++.+.. ...+..++.+ .+...+-|..++.+.---.+-.++...++
T Consensus 293 lsat~~----------~~~~~~~~~~~~~~~~~~~I~TKlDet~~~G~~l~~~~~~~~ 340 (388)
T PRK12723 293 VSSTTK----------TSDVKEIFHQFSPFSYKTVIFTKLDETTCVGNLISLIYEMRK 340 (388)
T ss_pred EcCCCC----------HHHHHHHHHHhcCCCCCEEEEEeccCCCcchHHHHHHHHHCC
Confidence 443221 1223333333 23567888888877666666666655443
No 258
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=97.91 E-value=0.00096 Score=71.92 Aligned_cols=207 Identities=14% Similarity=0.191 Sum_probs=111.5
Q ss_pred chhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeCCCchh--hhhhhhc
Q 009072 149 EELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTPTPTI--WQEYMHN 223 (544)
Q Consensus 149 ~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~el---g~~viei~~s~~~~--~~e~l~~ 223 (544)
..+++......++...+..... ....++++|++|+||+++|+++.... +.+++.+++..... ....+..
T Consensus 143 ~~ii~~S~~~~~~~~~~~~~a~------~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~~~~lfg 216 (457)
T PRK11361 143 GHILTNSPAMMDICKDTAKIAL------SQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFG 216 (457)
T ss_pred cceecccHHHhHHHHHHHHHcC------CCcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHHHHHhcC
Confidence 4567777777777766666532 12579999999999999999997764 46788888765321 0000000
Q ss_pred cccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHHHHHhcCC----------
Q 009072 224 CKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTH---------- 293 (544)
Q Consensus 224 ~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~~~~~~~---------- 293 (544)
...+...... . .....+ ......+|+|||++.+... .+..|..+++...
T Consensus 217 ~~~~~~~~~~-~---------~~~g~~------~~a~~gtl~ld~i~~l~~~-----~q~~L~~~l~~~~~~~~~~~~~~ 275 (457)
T PRK11361 217 HEKGAFTGAQ-T---------LRQGLF------ERANEGTLLLDEIGEMPLV-----LQAKLLRILQEREFERIGGHQTI 275 (457)
T ss_pred CCCCCCCCCC-C---------CCCCce------EECCCCEEEEechhhCCHH-----HHHHHHHHHhcCcEEeCCCCcee
Confidence 0000000000 0 000000 0112458999999998753 2344555554432
Q ss_pred -CcEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCC--HHHHHHHHHHHH----HHhC---CCCCHHHHHH
Q 009072 294 -IPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPIT--NGSIKRTLSKIC----RQEQ---YSLSTEQIDL 363 (544)
Q Consensus 294 -~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s--~~~i~~~L~~i~----~~e~---~~i~~~~l~~ 363 (544)
..+-+|++++...... .....+ ...+..+.....|..+|+. .+++..++...+ ...+ ..+++++++.
T Consensus 276 ~~~~rii~~t~~~l~~~-~~~g~~--~~~l~~~l~~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~ 352 (457)
T PRK11361 276 KVDIRIIAATNRDLQAM-VKEGTF--REDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSL 352 (457)
T ss_pred eeceEEEEeCCCCHHHH-HHcCCc--hHHHHHHhccceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHH
Confidence 1233444432110000 000011 1233444445667777775 344544433333 3222 3589999999
Q ss_pred HHHHc-CCcHHHHHHHHHHhccC
Q 009072 364 VAQAS-GGDIRQAITSLQFSSLK 385 (544)
Q Consensus 364 Ia~~s-~GDiR~aIn~Lq~~~~~ 385 (544)
|.... -||+|..-|.++.++..
T Consensus 353 L~~~~wpgNv~eL~~~~~~~~~~ 375 (457)
T PRK11361 353 LTAWSWPGNIRELSNVIERAVVM 375 (457)
T ss_pred HHcCCCCCcHHHHHHHHHHHHHh
Confidence 98774 79999999999887754
No 259
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=97.91 E-value=0.00031 Score=68.34 Aligned_cols=67 Identities=21% Similarity=0.388 Sum_probs=48.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCCchhhhhhhhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCC
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGES 258 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~~~~~~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~ 258 (544)
..-.++||+|+|||.+++.+|+.+|..++.+|.++. +++ ..+.+++.-+...
T Consensus 33 ~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~-------------~~~----~~l~ril~G~~~~----------- 84 (231)
T PF12774_consen 33 LGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQ-------------MDY----QSLSRILKGLAQS----------- 84 (231)
T ss_dssp TEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSS-------------S-H----HHHHHHHHHHHHH-----------
T ss_pred CCCCCcCCCCCCchhHHHHHHHHhCCeEEEeccccc-------------ccH----HHHHHHHHHHhhc-----------
Confidence 356789999999999999999999999999998652 222 3445555544433
Q ss_pred CCceEEEEecCCCCCch
Q 009072 259 KSSAILLIDDLPVTNGR 275 (544)
Q Consensus 259 ~~~~vIlIDEid~l~~~ 275 (544)
..-+++||+++++..
T Consensus 85 --GaW~cfdefnrl~~~ 99 (231)
T PF12774_consen 85 --GAWLCFDEFNRLSEE 99 (231)
T ss_dssp --T-EEEEETCCCSSHH
T ss_pred --CchhhhhhhhhhhHH
Confidence 357899999999753
No 260
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=97.90 E-value=0.00015 Score=72.71 Aligned_cols=158 Identities=18% Similarity=0.257 Sum_probs=86.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCCchhhhhhhhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCC
Q 009072 181 LVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKS 260 (544)
Q Consensus 181 lLL~GPpG~GKTtla~~lA~elg~~viei~~s~~~~~~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~ 260 (544)
+++.||+|+|||+++..||++++..++....-. +..++...+..-. .++.. +-
T Consensus 2 i~i~G~t~~GKs~la~~l~~~~~~~iis~Ds~q----------vY~~l~IgTakp~----~~e~~-------------~v 54 (287)
T TIGR00174 2 IFIMGPTAVGKSQLAIQLAKKLNAEIISVDSMQ----------IYKGMDIGTAKPS----LQERE-------------GI 54 (287)
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCcEEEechhh----------eeeeccccCCCCC----HHHHc-------------Cc
Confidence 789999999999999999999998876654321 1112211100000 00000 11
Q ss_pred ceEEEEecCC--CCCchhHHHH-HHHHHHHHHhcCCCcEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCC
Q 009072 261 SAILLIDDLP--VTNGRTAFER-LRQCLLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPIT 337 (544)
Q Consensus 261 ~~vIlIDEid--~l~~~~~~~~-~~~~L~~~~~~~~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s 337 (544)
| --++|-++ .......+.+ ..+.+.++...++.|+| ++.++ .| +++++.. +...|+.
T Consensus 55 ~-hhlid~~~~~~~~~v~~f~~~a~~~i~~~~~~g~~pi~--vGGTg------~Y------i~all~g-----~~~~p~~ 114 (287)
T TIGR00174 55 P-HHLIDILDPSESYSAADFQTLALNAIADITARGKIPLL--VGGTG------LY------LKALLEG-----LSPTPSA 114 (287)
T ss_pred c-EEEEEEechhheEcHHHHHHHHHHHHHHHHhCCCCEEE--EcCcH------HH------HHHHHcC-----CCCCCCC
Confidence 2 23444333 2222222333 34667777777776644 44322 11 3455442 2233555
Q ss_pred HHHHHHHHHHHHHHhCC--------CCCHHHHHHHHHHcCCcHHHHHHHHHHhccCCCC
Q 009072 338 NGSIKRTLSKICRQEQY--------SLSTEQIDLVAQASGGDIRQAITSLQFSSLKQDP 388 (544)
Q Consensus 338 ~~~i~~~L~~i~~~e~~--------~i~~~~l~~Ia~~s~GDiR~aIn~Lq~~~~~~~~ 388 (544)
..+++..+...+...|. .++++.... ...+|.|+.+..|+.+...+.+
T Consensus 115 ~~~~r~~l~~~~~~~g~~~l~~~L~~~DP~~a~~---i~~nd~~Ri~RALEi~~~tG~~ 170 (287)
T TIGR00174 115 DKLIREQLEILAEEQGWDFLYNELKKVDPVAAAK---IHPNDTRRVQRALEVFYATGKP 170 (287)
T ss_pred CHHHHHHHHHHHHHcCHHHHHHHHHhcCHHHHHh---cCCccHHHHHHHHHHHHHHCCC
Confidence 66777777766655442 234443322 2569999999999998765443
No 261
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.89 E-value=0.00037 Score=72.47 Aligned_cols=110 Identities=14% Similarity=0.214 Sum_probs=63.3
Q ss_pred ceEEEEecCCCCCchhH--HHHHHHHHHHHHhcCCCcEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCH
Q 009072 261 SAILLIDDLPVTNGRTA--FERLRQCLLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITN 338 (544)
Q Consensus 261 ~~vIlIDEid~l~~~~~--~~~~~~~L~~~~~~~~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~ 338 (544)
+.||+||.+..-..... +..+.+.--.+++..-..+||++++... ...|...|...-...|.+.-.++
T Consensus 149 ~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv~~nIAHVIFlT~dv~~----------~k~LskaLPn~vf~tI~L~Das~ 218 (431)
T PF10443_consen 149 RPVVVIDNFLHKAEENDFIYDKLAEWAASLVQNNIAHVIFLTDDVSY----------SKPLSKALPNRVFKTISLSDASP 218 (431)
T ss_pred CCEEEEcchhccCcccchHHHHHHHHHHHHHhcCccEEEEECCCCch----------hhhHHHhCCCCceeEEeecCCCH
Confidence 45999999976433211 1222222223344444456666655332 12233333222367889999999
Q ss_pred HHHHHHHHHHHHHhC-C-------------------CCCHHHHHHHHHHcCCcHHHHHHHHHHhcc
Q 009072 339 GSIKRTLSKICRQEQ-Y-------------------SLSTEQIDLVAQASGGDIRQAITSLQFSSL 384 (544)
Q Consensus 339 ~~i~~~L~~i~~~e~-~-------------------~i~~~~l~~Ia~~s~GDiR~aIn~Lq~~~~ 384 (544)
+.-++++...+.... . ......++..++.-||-+. .||+++.
T Consensus 219 ~~Ak~yV~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRlt----DLe~lvr 280 (431)
T PF10443_consen 219 ESAKQYVLSQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLT----DLEFLVR 280 (431)
T ss_pred HHHHHHHHHHhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHH----HHHHHHH
Confidence 999998888876531 1 1355667777777888654 3566654
No 262
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=97.89 E-value=0.00072 Score=73.06 Aligned_cols=207 Identities=16% Similarity=0.223 Sum_probs=117.4
Q ss_pred chhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeCCCchh-h-hhhhhc
Q 009072 149 EELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTPTPTI-W-QEYMHN 223 (544)
Q Consensus 149 ~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~el---g~~viei~~s~~~~-~-~e~l~~ 223 (544)
..+++......++...+.... +.. ..+++.|.+||||+++|+++.+.. +.+++.+++..... + ...+..
T Consensus 134 ~~lig~s~~~~~v~~~i~~~a----~~~--~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~~~lfg 207 (463)
T TIGR01818 134 AELIGEAPAMQEVFRAIGRLS----RSD--ITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIESELFG 207 (463)
T ss_pred cceeecCHHHHHHHHHHHHHh----CcC--CeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHhcC
Confidence 357777777777777765532 121 569999999999999999998764 45788888765311 0 000000
Q ss_pred cccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHHHHHhcCC----------
Q 009072 224 CKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTH---------- 293 (544)
Q Consensus 224 ~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~~~~~~~---------- 293 (544)
...|. +... ... .... . .......|+|||++.++.. .+..|..+++.+.
T Consensus 208 ~~~~~-~~~~-------~~~--~~g~----~--~~a~~gtl~l~ei~~l~~~-----~q~~ll~~l~~~~~~~~~~~~~~ 266 (463)
T TIGR01818 208 HEKGA-FTGA-------NTR--RQGR----F--EQADGGTLFLDEIGDMPLD-----AQTRLLRVLADGEFYRVGGRTPI 266 (463)
T ss_pred CCCCC-CCCc-------ccC--CCCc----E--EECCCCeEEEEchhhCCHH-----HHHHHHHHHhcCcEEECCCCcee
Confidence 00000 0000 000 0000 0 0112457999999998753 2334555555432
Q ss_pred -CcEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCC--HHHHHHHHHHHHHH----hC---CCCCHHHHHH
Q 009072 294 -IPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPIT--NGSIKRTLSKICRQ----EQ---YSLSTEQIDL 363 (544)
Q Consensus 294 -~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s--~~~i~~~L~~i~~~----e~---~~i~~~~l~~ 363 (544)
..+-+|+++...... -.....+ -+.++.+.....|.++|+. .+++..++...+.. .+ ..+++++++.
T Consensus 267 ~~~~rii~~~~~~l~~-~~~~~~f--~~~L~~rl~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~ 343 (463)
T TIGR01818 267 KVDVRIVAATHQNLEA-LVRQGKF--REDLFHRLNVIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALER 343 (463)
T ss_pred eeeeEEEEeCCCCHHH-HHHcCCc--HHHHHHHhCcceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHH
Confidence 123344443211000 0000011 1245555556688888887 66777766655443 23 3589999999
Q ss_pred HHHHc-CCcHHHHHHHHHHhccC
Q 009072 364 VAQAS-GGDIRQAITSLQFSSLK 385 (544)
Q Consensus 364 Ia~~s-~GDiR~aIn~Lq~~~~~ 385 (544)
|.... -||+|..-|.++.++..
T Consensus 344 L~~~~wpgNvreL~~~~~~~~~~ 366 (463)
T TIGR01818 344 LKQLRWPGNVRQLENLCRWLTVM 366 (463)
T ss_pred HHhCCCCChHHHHHHHHHHHHHh
Confidence 99874 69999999999988764
No 263
>PRK05574 holA DNA polymerase III subunit delta; Reviewed
Probab=97.87 E-value=0.00083 Score=69.40 Aligned_cols=118 Identities=13% Similarity=0.160 Sum_probs=78.8
Q ss_pred CceEEEEecCCCCCchhHHHHHHHHHHHHHhcCCCc-EEEEEccCCCCCCCCccccchHH-HHHHHhhcCceeEEecCCC
Q 009072 260 SSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIP-TAVVLTECGKADSVDSTAQSFEE-LQSILVDAGARKVALNPIT 337 (544)
Q Consensus 260 ~~~vIlIDEid~l~~~~~~~~~~~~L~~~~~~~~~p-iIiI~t~~~~~~~~d~~~~~l~~-l~~ll~r~~~~~I~f~p~s 337 (544)
.+.|++|++++.+.... .......|..++.....+ +++++.... .+. ...+.. .+.+ .. .+..+.|.+++
T Consensus 76 ~~klvii~~~~~l~~~~-~~~~l~~l~~~l~~~~~~~~~li~~~~~----~~~-~~k~~k~~k~~-~~-~~~~~~~~~~~ 147 (340)
T PRK05574 76 DRKLVELRLPEFLTGAK-GEKALKRLEAYLNPLPHPDLLLIVRLPK----LDK-AKKKSAWFKAL-KK-KAVVVEAQPPK 147 (340)
T ss_pred cCeEEEEECCCCCCchh-HHHHHHHHHHhccCCCCCcEEEEEECCc----CCH-HHHhhHHHHHH-Hh-CceEEEcCCCC
Confidence 46799999999875532 122223344444212222 344433211 010 011111 2333 22 37899999999
Q ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHhccC
Q 009072 338 NGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIRQAITSLQFSSLK 385 (544)
Q Consensus 338 ~~~i~~~L~~i~~~e~~~i~~~~l~~Ia~~s~GDiR~aIn~Lq~~~~~ 385 (544)
..++..++...+...|+.+++++++.|++.++||++.+.+.++-++.-
T Consensus 148 ~~~~~~~i~~~~~~~g~~i~~~a~~~L~~~~~~d~~~l~~El~KL~l~ 195 (340)
T PRK05574 148 EAELPQWIQQRLKQQGLQIDAAALQLLAERVEGNLLALAQELEKLALL 195 (340)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCchHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999988887653
No 264
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.87 E-value=0.0002 Score=72.57 Aligned_cols=178 Identities=15% Similarity=0.228 Sum_probs=102.0
Q ss_pred chhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCCchhhhhhhh----cc
Q 009072 149 EELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIWQEYMH----NC 224 (544)
Q Consensus 149 ~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~~~~~~e~l~----~~ 224 (544)
..+.+++..++.+...+-... ...| -+++|+|-+|||||.+++.+.++++.+.+.++.-+.-.|...+. ..
T Consensus 6 ~~v~~Re~qi~~L~~Llg~~~----~~~P-S~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecft~~~lle~IL~~~ 80 (438)
T KOG2543|consen 6 PNVPCRESQIRRLKSLLGNNS----CTIP-SIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECFTYAILLEKILNKS 80 (438)
T ss_pred cCccchHHHHHHHHHHhCCCC----cccc-eeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHhccHHHHHHHHHHHh
Confidence 456788888988888774421 2233 57899999999999999999999988887777655433332222 11
Q ss_pred ----ccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHHHHHhcCCCcEEEEE
Q 009072 225 ----KTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPTAVVL 300 (544)
Q Consensus 225 ----~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~~~~~~~~piIiI~ 300 (544)
..|.........|.+|+....++..... ..+..+|++|.+|.+..-++ .+.+.|.++-+-.+.|.+.|+
T Consensus 81 ~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~-----~d~~~~liLDnad~lrD~~a--~ll~~l~~L~el~~~~~i~ii 153 (438)
T KOG2543|consen 81 QLADKDGDKVEGDAENFSDFIYLLVQWPAATN-----RDQKVFLILDNADALRDMDA--ILLQCLFRLYELLNEPTIVII 153 (438)
T ss_pred ccCCCchhhhhhHHHHHHHHHHHHHhhHHhhc-----cCceEEEEEcCHHhhhccch--HHHHHHHHHHHHhCCCceEEE
Confidence 1121111223556666666655432211 13467899999998743222 123444444343444444333
Q ss_pred ccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHH
Q 009072 301 TECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSK 347 (544)
Q Consensus 301 t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~ 347 (544)
...... .+.+..+ ......-.+.|+.++.+++..++.+
T Consensus 154 ls~~~~--e~~y~~n-------~g~~~i~~l~fP~Ys~~e~~~Il~~ 191 (438)
T KOG2543|consen 154 LSAPSC--EKQYLIN-------TGTLEIVVLHFPQYSVEETQVILSR 191 (438)
T ss_pred Eecccc--HHHhhcc-------cCCCCceEEecCCCCHHHHHHHHhc
Confidence 321110 0111100 0111255789999999999888775
No 265
>PLN02840 tRNA dimethylallyltransferase
Probab=97.84 E-value=0.00027 Score=74.07 Aligned_cols=163 Identities=20% Similarity=0.211 Sum_probs=87.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCCchhhhhhhhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCC
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGES 258 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~~~~~~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~ 258 (544)
..++|.||+|+|||+++..||++++..++..+.-. + ..++...+..-. .++..
T Consensus 22 ~vi~I~GptgsGKTtla~~La~~~~~~iis~Ds~q---v-------Yr~~~IgTaKpt----~eE~~------------- 74 (421)
T PLN02840 22 KVIVISGPTGAGKSRLALELAKRLNGEIISADSVQ---V-------YRGLDVGSAKPS----LSERK------------- 74 (421)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHCCCCeEeccccc---e-------ecceeEEcCCCC----HHHHc-------------
Confidence 68999999999999999999999998876654321 1 111111100000 00110
Q ss_pred CCceEEEEecCCCC--CchhHH-HHHHHHHHHHHhcCCCcEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecC
Q 009072 259 KSSAILLIDDLPVT--NGRTAF-ERLRQCLLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNP 335 (544)
Q Consensus 259 ~~~~vIlIDEid~l--~~~~~~-~~~~~~L~~~~~~~~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p 335 (544)
+-| --+||-++-- ..-..| +....++.++...++.|+|+ +.++ .| +++++.- +.+.|
T Consensus 75 ~V~-Hhlidil~p~e~ySv~~F~~~A~~~I~~i~~rgkiPIvV--GGTG------lY------l~aLl~G-----~~~~p 134 (421)
T PLN02840 75 EVP-HHLIDILHPSDDYSVGAFFDDARRATQDILNRGRVPIVA--GGTG------LY------LRWYIYG-----KPDVP 134 (421)
T ss_pred CCC-eEeEeecCCCCceeHHHHHHHHHHHHHHHHhcCCCEEEE--cCcc------HH------HHHHhcC-----CCCCC
Confidence 112 2345555432 222223 33346667777778777654 3322 12 3455432 33345
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCH-HHHHHHH--------HHcCCcHHHHHHHHHHhccCCCC
Q 009072 336 ITNGSIKRTLSKICRQEQYSLST-EQIDLVA--------QASGGDIRQAITSLQFSSLKQDP 388 (544)
Q Consensus 336 ~s~~~i~~~L~~i~~~e~~~i~~-~~l~~Ia--------~~s~GDiR~aIn~Lq~~~~~~~~ 388 (544)
+...+++..+...+...+..-.. .....+. ...-+|.|+.+..|+.+...+.+
T Consensus 135 ~~~~~~r~~l~~~l~~~~~~~g~~~l~~~Ll~~~DP~A~~i~pnD~~Ri~RALEV~~~TG~~ 196 (421)
T PLN02840 135 KSSPEITSEVWSELVDFQKNGDWDAAVELVVNAGDPKARSLPRNDWYRLRRSLEIIKSSGSP 196 (421)
T ss_pred CCCHHHHHHHHHHHHHhccccCHHHHHHHHHhccCcHHHhcCCCcHHHHHHHHHHHHHHCCC
Confidence 55666666666655543321112 2233322 23568999999999998765543
No 266
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.83 E-value=0.0011 Score=68.60 Aligned_cols=152 Identities=15% Similarity=0.184 Sum_probs=78.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeCCCch-----hhhhhhhccccCccc--ccchHHHHHHHHHHHhhc
Q 009072 179 NVLVITGQAGVGKTATVRQIASHL---GARLYEWDTPTPT-----IWQEYMHNCKTGLEY--TSKLDEFENFVERIRRYG 248 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~el---g~~viei~~s~~~-----~~~e~l~~~~~g~~~--~s~~~~~~~~l~~~~~~~ 248 (544)
+.++|.||+|+||||++..||..+ |..+.-+.+-..+ .+..+.. ..++.. ......+.+.+..+...
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae--~lgipv~v~~d~~~L~~aL~~lk~~- 318 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVK--TIGFEVIAVRDEAAMTRALTYFKEE- 318 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhh--hcCCcEEecCCHHHHHHHHHHHHhc-
Confidence 789999999999999999999876 4566555543333 1121111 112221 22334555555544321
Q ss_pred CCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHHHHHhcCCCc-EEEEEccCCCCCCCCccccchHHHHHHHhhcC
Q 009072 249 STSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIP-TAVVLTECGKADSVDSTAQSFEELQSILVDAG 327 (544)
Q Consensus 249 ~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~~~~~~~~p-iIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~ 327 (544)
....+||||-........ ..++.|..+++..... ++++++.+.. ...+..+-..++..+
T Consensus 319 ----------~~~DvVLIDTaGRs~kd~---~lm~EL~~~lk~~~PdevlLVLsATtk-------~~d~~~i~~~F~~~~ 378 (436)
T PRK11889 319 ----------ARVDYILIDTAGKNYRAS---ETVEEMIETMGQVEPDYICLTLSASMK-------SKDMIEIITNFKDIH 378 (436)
T ss_pred ----------cCCCEEEEeCccccCcCH---HHHHHHHHHHhhcCCCeEEEEECCccC-------hHHHHHHHHHhcCCC
Confidence 123589999887754321 1223344544433222 3344432111 011111112223335
Q ss_pred ceeEEecCCCHHHHHHHHHHHHHHhC
Q 009072 328 ARKVALNPITNGSIKRTLSKICRQEQ 353 (544)
Q Consensus 328 ~~~I~f~p~s~~~i~~~L~~i~~~e~ 353 (544)
...+-|..++.+.-.-.+-.++..-+
T Consensus 379 idglI~TKLDET~k~G~iLni~~~~~ 404 (436)
T PRK11889 379 IDGIVFTKFDETASSGELLKIPAVSS 404 (436)
T ss_pred CCEEEEEcccCCCCccHHHHHHHHHC
Confidence 66777888877665555555555443
No 267
>PRK07452 DNA polymerase III subunit delta; Validated
Probab=97.81 E-value=0.0011 Score=68.22 Aligned_cols=169 Identities=16% Similarity=0.172 Sum_probs=104.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhC------CeEEEEeCCCchhhhhhhhccccCcccccchHHHHHHHHHHHhhcCCCC
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLG------ARLYEWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSP 252 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg------~~viei~~s~~~~~~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~ 252 (544)
+..||||+----....+..+.+.+. +.+.++.+.+ .+.+..+++.+...+.
T Consensus 2 ~~yll~G~e~~l~~~~~~~l~~~~~~~~~~~fn~~~~d~~~--------------------~~~~~~~~~~~~t~pf--- 58 (326)
T PRK07452 2 PIYLYWGEDDFALNQAIEKLIDQVVDPEWKSFNYSRLDGDD--------------------ADQAIQALNEAMTPPF--- 58 (326)
T ss_pred CEEEEEcChHHHHHHHHHHHHHHhCCchhhhcchhhcCCcc--------------------chHHHHHHHHhcCCCC---
Confidence 4789999988777777777776542 2222222211 1224455555432221
Q ss_pred CCCCCCCCceEEEEecCCCCCchhHHHHHHHHHHHHHhcCCCcEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEE
Q 009072 253 SIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVA 332 (544)
Q Consensus 253 ~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~~~~~~~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~ 332 (544)
. ..+++|+|++++...+. -....+.|..+++......++|+..... .| .+ ......+.. .+.+..
T Consensus 59 --f---~~~rlVvv~~~~~~~~~--~~~~~~~L~~~l~~~~~~~~li~~~~~~---~d---~r-~k~~k~l~k-~~~~~~ 123 (326)
T PRK07452 59 --G---SGGRLVWLKNSPLCQGC--SEELLAELERTLPLIPENTHLLLTNTKK---PD---GR-LKSTKLLQK-LAEEKE 123 (326)
T ss_pred --C---CCceEEEEeCchhhccC--CHHHHHHHHHHHcCCCCCcEEEEEeCCC---cc---hH-HHHHHHHHH-ceeEEE
Confidence 1 23668899987654221 1233456777777644334444322111 11 11 112222333 256788
Q ss_pred ecCC---CHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHhccC
Q 009072 333 LNPI---TNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIRQAITSLQFSSLK 385 (544)
Q Consensus 333 f~p~---s~~~i~~~L~~i~~~e~~~i~~~~l~~Ia~~s~GDiR~aIn~Lq~~~~~ 385 (544)
|.++ ...++.+++...+...|+.+++++++.|++.++||++.+.+.|+-++.-
T Consensus 124 ~~~~~~~~~~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g~dl~~l~~EleKL~ly 179 (326)
T PRK07452 124 FSLIPPWDTEGLKQLVERTAQELGVKLTPEAAELLAEAVGNDSRRLYNELEKLALY 179 (326)
T ss_pred ecCCCcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCccHHHHHHHHHHHHHh
Confidence 8766 4567999999999999999999999999999999999999999988763
No 268
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=97.81 E-value=9.6e-05 Score=79.88 Aligned_cols=47 Identities=19% Similarity=0.267 Sum_probs=37.3
Q ss_pred CCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 009072 146 RSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL 202 (544)
Q Consensus 146 ~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~el 202 (544)
..|+|+.|+...++.+.-.+. ..++++|.||||+||||+++.++..+
T Consensus 189 ~d~~dv~Gq~~~~~al~~aa~----------~g~~vlliG~pGsGKTtlar~l~~ll 235 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIAAA----------GGHNLLLFGPPGSGKTMLASRLQGIL 235 (499)
T ss_pred CCHHHhcCcHHHHhhhhhhcc----------CCCEEEEEecCCCCHHHHHHHHhccc
Confidence 489999999887666544331 12689999999999999999999865
No 269
>PRK14974 cell division protein FtsY; Provisional
Probab=97.81 E-value=0.00079 Score=69.12 Aligned_cols=33 Identities=33% Similarity=0.419 Sum_probs=26.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeC
Q 009072 179 NVLVITGQAGVGKTATVRQIASHL---GARLYEWDT 211 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~el---g~~viei~~ 211 (544)
..++|+||||+||||++..+|..+ |..+.-+.+
T Consensus 141 ~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~ 176 (336)
T PRK14974 141 VVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAG 176 (336)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecC
Confidence 799999999999999998888765 566655543
No 270
>smart00350 MCM minichromosome maintenance proteins.
Probab=97.80 E-value=0.00068 Score=74.04 Aligned_cols=148 Identities=11% Similarity=0.149 Sum_probs=75.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCeEEEE-eCCCchhhhhhhhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCC
Q 009072 180 VLVITGQAGVGKTATVRQIASHLGARLYEW-DTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGES 258 (544)
Q Consensus 180 ~lLL~GPpG~GKTtla~~lA~elg~~viei-~~s~~~~~~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~ 258 (544)
++||.|+||+|||++|+.+++......... ..++. .++... .+++-.. ..+....... ..
T Consensus 238 ~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~-----------~~l~~~----~~~~~~~--g~~~~~~G~l--~~ 298 (509)
T smart00350 238 NILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSA-----------VGLTAA----VTRDPET--REFTLEGGAL--VL 298 (509)
T ss_pred eEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCc-----------CCcccc----ceEccCc--ceEEecCccE--Ee
Confidence 799999999999999999999764332111 00110 011000 0000000 0000000000 01
Q ss_pred CCceEEEEecCCCCCchhHHHHHHHHHHHHHhcCC-------------CcEEEEEccCCCCCCCCcc---ccchHHHHHH
Q 009072 259 KSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTH-------------IPTAVVLTECGKADSVDST---AQSFEELQSI 322 (544)
Q Consensus 259 ~~~~vIlIDEid~l~~~~~~~~~~~~L~~~~~~~~-------------~piIiI~t~~~~~~~~d~~---~~~l~~l~~l 322 (544)
....+++|||++.+... .+..|++.++... .+..+|++.+.....-+.. ...+....++
T Consensus 299 A~~Gil~iDEi~~l~~~-----~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~l 373 (509)
T smart00350 299 ADNGVCCIDEFDKMDDS-----DRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDPKLTPEENIDLPAPI 373 (509)
T ss_pred cCCCEEEEechhhCCHH-----HHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCCcccCCCcChhhccCCChHH
Confidence 12459999999998653 2344555554422 2334444432211100100 1112233678
Q ss_pred HhhcCceeEEecCCCHHHHHHHHHHHHHH
Q 009072 323 LVDAGARKVALNPITNGSIKRTLSKICRQ 351 (544)
Q Consensus 323 l~r~~~~~I~f~p~s~~~i~~~L~~i~~~ 351 (544)
|+||....+-...++.+.-..++.+++..
T Consensus 374 LsRFdLi~~~~d~~~~~~d~~i~~~i~~~ 402 (509)
T smart00350 374 LSRFDLLFVVLDEVDEERDRELAKHVVDL 402 (509)
T ss_pred hCceeeEEEecCCCChHHHHHHHHHHHHh
Confidence 89976666777888888888888887654
No 271
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=97.79 E-value=2.1e-05 Score=74.32 Aligned_cols=46 Identities=22% Similarity=0.339 Sum_probs=35.2
Q ss_pred CcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 009072 147 SLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL 202 (544)
Q Consensus 147 ~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~el 202 (544)
+|+|++|++..++.+.-... | .+++||+||||+|||++|+.+..-|
T Consensus 1 Df~dI~GQe~aKrAL~iAAa-------G---~h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAA-------G---GHHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHH-------C---C--EEEES-CCCTHHHHHHHHHHCS
T ss_pred ChhhhcCcHHHHHHHHHHHc-------C---CCCeEEECCCCCCHHHHHHHHHHhC
Confidence 47899999988887765443 2 1789999999999999999999875
No 272
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.79 E-value=5.4e-05 Score=65.64 Aligned_cols=52 Identities=33% Similarity=0.345 Sum_probs=39.7
Q ss_pred hhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 009072 150 ELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL 202 (544)
Q Consensus 150 dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~el 202 (544)
.|.|++-.++.|...|..+...+....| -.|-|+||||||||.+++.||+.+
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~p~Kp-LVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPNPRKP-LVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCCCCCC-EEEEeecCCCCcHHHHHHHHHHHH
Confidence 4678887888888888877764322222 455599999999999999999996
No 273
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.77 E-value=0.00014 Score=69.99 Aligned_cols=22 Identities=36% Similarity=0.641 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHH
Q 009072 179 NVLVITGQAGVGKTATVRQIAS 200 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~ 200 (544)
+.++|+||.|+||||+.+.++.
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 6899999999999999999983
No 274
>PRK08485 DNA polymerase III subunit delta'; Validated
Probab=97.77 E-value=0.00039 Score=65.05 Aligned_cols=116 Identities=11% Similarity=0.082 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHHHHHhcCCCcEEEEEccCCCCCCCCcccc
Q 009072 235 DEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPTAVVLTECGKADSVDSTAQ 314 (544)
Q Consensus 235 ~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~~~~~~~~piIiI~t~~~~~~~~d~~~~ 314 (544)
++++++++.+...+ ...+ ++|++++.+... ..++|++.+++++..++||..+... .
T Consensus 40 d~iReii~~~~~~~----------~~~k-~iI~~a~~l~~~-----A~NaLLK~LEEPp~~~~fiL~t~~~-------~- 95 (206)
T PRK08485 40 EDAKEVIAEAYIAE----------SEEK-IIVIAAPSYGIE-----AQNALLKILEEPPKNICFIIVAKSK-------N- 95 (206)
T ss_pred HHHHHHHHHHhhCC----------CCcE-EEEEchHhhCHH-----HHHHHHHHhcCCCCCeEEEEEeCCh-------H-
Confidence 66777777764321 1233 457889987643 3478999999987777766654321 1
Q ss_pred chHHHHHHHhhcCcee-------------EEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHH
Q 009072 315 SFEELQSILVDAGARK-------------VALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIRQAITSL 379 (544)
Q Consensus 315 ~l~~l~~ll~r~~~~~-------------I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~l~~Ia~~s~GDiR~aIn~L 379 (544)
..++.+.+| |.. +.|.+++..++..+|.. +.+++....+++++.|+..+.|.+|.++...
T Consensus 96 --~llpTI~SR--c~~~~~~~~~~~~~l~l~l~~l~~~~i~~~L~~-~~ke~~~~~~ea~~lIa~la~~s~r~~l~l~ 168 (206)
T PRK08485 96 --LLLPTIRSR--LIIEKRKQKKPVKPLDLDLKKLDLKDIYEFLKE-LEKENKLSKEELKELIESLLKECVKYKIPLN 168 (206)
T ss_pred --hCchHHHhh--heeccccccccccccccccCCCCHHHHHHHHHH-HHHcccccHHHHHHHHHHHHHHHHHHHcCcc
Confidence 123455554 664 77999999999999999 7888888889999999999999999986533
No 275
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=97.76 E-value=0.00047 Score=69.44 Aligned_cols=159 Identities=14% Similarity=0.095 Sum_probs=86.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCCchhhhhhhhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCC
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGES 258 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~~~~~~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~ 258 (544)
+.++|.||+|+|||.+|-.||++ +. |+.+.|....+..+.- |..-.+ .++..
T Consensus 5 ~ii~I~GpTasGKS~LAl~LA~~-~~---eIIsaDS~QvYr~ldI---gTaKpt--------~eE~~------------- 56 (300)
T PRK14729 5 KIVFIFGPTAVGKSNILFHFPKG-KA---EIINVDSIQVYKEFDI---ASCKPS--------KELRK------------- 56 (300)
T ss_pred cEEEEECCCccCHHHHHHHHHHh-CC---cEEeccHHHHHCCCce---ecCCCC--------HHHHc-------------
Confidence 68999999999999999999999 43 4444454433222211 111001 01110
Q ss_pred CCceEEEEecCCCC--CchhHHH-HHHHHHHHHHhcCCCcEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecC
Q 009072 259 KSSAILLIDDLPVT--NGRTAFE-RLRQCLLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNP 335 (544)
Q Consensus 259 ~~~~vIlIDEid~l--~~~~~~~-~~~~~L~~~~~~~~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p 335 (544)
.-| =-+||-++-- ..-..|. ...+++.++...++.|+| |+.++ .| +++++. -+.+.|
T Consensus 57 ~i~-Hhlid~~~p~e~~sv~~f~~~a~~~i~~i~~~gk~Pil--vGGTg------lY------i~all~-----gl~~~p 116 (300)
T PRK14729 57 HIK-HHLVDFLEPIKEYNLGIFYKEALKIIKELRQQKKIPIF--VGGSA------FY------FKHLKY-----GLPSTP 116 (300)
T ss_pred CCC-eeeeeccCCCCceeHHHHHHHHHHHHHHHHHCCCCEEE--EeCch------HH------HHHHHc-----CCCCCC
Confidence 011 2355655432 1112232 234566666667777654 33322 12 345543 233345
Q ss_pred CCHHHHHHHHHHHHHHhCC--------CCCHHHHHHHHHHcCCcHHHHHHHHHHhccCCCC
Q 009072 336 ITNGSIKRTLSKICRQEQY--------SLSTEQIDLVAQASGGDIRQAITSLQFSSLKQDP 388 (544)
Q Consensus 336 ~s~~~i~~~L~~i~~~e~~--------~i~~~~l~~Ia~~s~GDiR~aIn~Lq~~~~~~~~ 388 (544)
+.+..++..+...+...|. .++++... ...-+|.|+.+..|+.+...+.+
T Consensus 117 ~~~~~~r~~~~~~~~~~g~~~l~~~L~~~DP~~A~---~i~pnd~~Ri~RALEv~~~tG~~ 174 (300)
T PRK14729 117 PVSSKIRIYVNNLFTLKGKSYLLEELKRVDFIRYE---SINKNDIYRIKRSLEVYYQTGIP 174 (300)
T ss_pred CCCHHHHHHHHHHHHhcCHHHHHHHHHhcCHHHHh---hCCcCCHHHHHHHHHHHHHhCCC
Confidence 5566777777766655542 23333322 22569999999999998765443
No 276
>PRK10536 hypothetical protein; Provisional
Probab=97.76 E-value=0.00051 Score=67.24 Aligned_cols=35 Identities=29% Similarity=0.340 Sum_probs=27.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH-h---CCeEEEEeCCC
Q 009072 179 NVLVITGQAGVGKTATVRQIASH-L---GARLYEWDTPT 213 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~e-l---g~~viei~~s~ 213 (544)
..++++||+|||||+++.++|.+ + .+..+.+..|.
T Consensus 75 ~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~ 113 (262)
T PRK10536 75 QLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPV 113 (262)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCC
Confidence 58999999999999999999985 3 34545555554
No 277
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=97.75 E-value=0.00019 Score=72.85 Aligned_cols=159 Identities=19% Similarity=0.264 Sum_probs=87.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCCchhhhhhhhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCC
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGES 258 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~~~~~~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~ 258 (544)
+.++++||+|+|||++|..||++++..++..+.-. . ..++......-. .++.
T Consensus 5 ~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds~Q---v-------y~~l~i~Takp~----~~E~-------------- 56 (307)
T PRK00091 5 KVIVIVGPTASGKTALAIELAKRLNGEIISADSMQ---V-------YRGMDIGTAKPT----AEER-------------- 56 (307)
T ss_pred eEEEEECCCCcCHHHHHHHHHHhCCCcEEeccccc---e-------eecccccCCCCC----HHHH--------------
Confidence 68999999999999999999999998776543321 1 111111100000 0000
Q ss_pred CCceEEEEecCCC--CCchhHHH-HHHHHHHHHHhcCCCcEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecC
Q 009072 259 KSSAILLIDDLPV--TNGRTAFE-RLRQCLLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNP 335 (544)
Q Consensus 259 ~~~~vIlIDEid~--l~~~~~~~-~~~~~L~~~~~~~~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p 335 (544)
..-.--+||.++- ......|. .....+.++...++.|+|+ +.++ .| +++++.. . ...|
T Consensus 57 ~gv~hhlid~~~~~~~~s~~~f~~~a~~~i~~i~~~gk~pIlv--GGt~------~Y------~~al~~g--~---~~~p 117 (307)
T PRK00091 57 AGVPHHLIDILDPTESYSVADFQRDALAAIADILARGKLPILV--GGTG------LY------IKALLEG--L---SPLP 117 (307)
T ss_pred cCccEEeecccChhhcccHHHHHHHHHHHHHHHHhCCCCEEEE--CcHH------HH------HHHhccC--C---CCCC
Confidence 0112345554442 22222222 2335566666777776665 3311 11 2344331 2 1456
Q ss_pred CCHHHHHHHHHHHHHHhCC--------CCCHHHHHHHHHHcCCcHHHHHHHHHHhccCCC
Q 009072 336 ITNGSIKRTLSKICRQEQY--------SLSTEQIDLVAQASGGDIRQAITSLQFSSLKQD 387 (544)
Q Consensus 336 ~s~~~i~~~L~~i~~~e~~--------~i~~~~l~~Ia~~s~GDiR~aIn~Lq~~~~~~~ 387 (544)
++...++..|.......|. .+++..... ...+|.|+.+..|+.+...+.
T Consensus 118 ~~~~~~r~~l~~~~~~~g~~~l~~~L~~~Dp~~a~~---i~~~d~~Ri~RAlEi~~~tG~ 174 (307)
T PRK00091 118 PADPELRAELEALAAEEGWEALHAELAEIDPEAAAR---IHPNDPQRIIRALEVYELTGK 174 (307)
T ss_pred CCCHHHHHHHHHHHHhcCHHHHHHHHHhcCHHHHhh---cCCCCCchhHHHHHHHHHHCC
Confidence 7777888888877666552 233433222 256899999999999865443
No 278
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=97.74 E-value=0.002 Score=68.61 Aligned_cols=199 Identities=13% Similarity=0.203 Sum_probs=116.5
Q ss_pred ccCCCCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeCCCchhhh
Q 009072 142 KYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTPTPTIWQ 218 (544)
Q Consensus 142 ky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~el---g~~viei~~s~~~~~~ 218 (544)
.+++-+|+++++......++.+..+.... . .-.+||.|.+||||-.+|+++-+.. +.+++.+|+.-...-
T Consensus 238 ~~a~y~f~~Iig~S~~m~~~~~~akr~A~----t--dstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe~- 310 (560)
T COG3829 238 LKAKYTFDDIIGESPAMLRVLELAKRIAK----T--DSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPET- 310 (560)
T ss_pred cccccchhhhccCCHHHHHHHHHHHhhcC----C--CCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCCHH-
Confidence 34556899999999888888887766432 1 2579999999999999999997764 678999998642200
Q ss_pred hhhhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCC----------CCceEEEEecCCCCCchhHHHHHHHHHHHH
Q 009072 219 EYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGES----------KSSAILLIDDLPVTNGRTAFERLRQCLLLL 288 (544)
Q Consensus 219 e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~----------~~~~vIlIDEid~l~~~~~~~~~~~~L~~~ 288 (544)
+ ++ ..-|.--...++|.. -+..-||+|||-.|+-. ++.-|+..
T Consensus 311 --L-------------------lE-SELFGye~GAFTGA~~~GK~GlfE~A~gGTLFLDEIgempl~-----LQaKLLRV 363 (560)
T COG3829 311 --L-------------------LE-SELFGYEKGAFTGASKGGKPGLFELANGGTLFLDEIGEMPLP-----LQAKLLRV 363 (560)
T ss_pred --H-------------------HH-HHHhCcCCccccccccCCCCcceeeccCCeEEehhhccCCHH-----HHHHHHHH
Confidence 0 00 000111111122111 12347999999887642 33335555
Q ss_pred HhcCC-----------CcEEEEEccCCCCCCCCccccchHHH-------HHHHhhcCceeEEecCC--CHHHHHHHHHHH
Q 009072 289 VRSTH-----------IPTAVVLTECGKADSVDSTAQSFEEL-------QSILVDAGARKVALNPI--TNGSIKRTLSKI 348 (544)
Q Consensus 289 ~~~~~-----------~piIiI~t~~~~~~~~d~~~~~l~~l-------~~ll~r~~~~~I~f~p~--s~~~i~~~L~~i 348 (544)
++... ..+=+|++++ +.+... ..+.-|.....|.++|+ -+++|.......
T Consensus 364 LQEkei~rvG~t~~~~vDVRIIAATN----------~nL~~~i~~G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~F 433 (560)
T COG3829 364 LQEKEIERVGGTKPIPVDVRIIAATN----------RNLEKMIAEGTFREDLYYRLNVIPITIPPLRERKEDIPLLAEYF 433 (560)
T ss_pred HhhceEEecCCCCceeeEEEEEeccC----------cCHHHHHhcCcchhhheeeeceeeecCCCcccCcchHHHHHHHH
Confidence 54322 1234444432 122111 12223333444555555 234454444444
Q ss_pred HH----HhC--C-CCCHHHHHHHHHH-cCCcHHHHHHHHHHhcc
Q 009072 349 CR----QEQ--Y-SLSTEQIDLVAQA-SGGDIRQAITSLQFSSL 384 (544)
Q Consensus 349 ~~----~e~--~-~i~~~~l~~Ia~~-s~GDiR~aIn~Lq~~~~ 384 (544)
+. ..+ + .++++++..|... --|++|..=|.++-+..
T Consensus 434 l~k~s~~~~~~v~~ls~~a~~~L~~y~WPGNVRELeNviER~v~ 477 (560)
T COG3829 434 LDKFSRRYGRNVKGLSPDALALLLRYDWPGNVRELENVIERAVN 477 (560)
T ss_pred HHHHHHHcCCCcccCCHHHHHHHHhCCCCchHHHHHHHHHHHHh
Confidence 43 333 2 3789999888776 35999999999998874
No 279
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.74 E-value=0.00095 Score=78.03 Aligned_cols=187 Identities=13% Similarity=0.179 Sum_probs=114.6
Q ss_pred hccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCCchhhhhhhhcc---ccC
Q 009072 151 LAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIWQEYMHNC---KTG 227 (544)
Q Consensus 151 Lv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~~~~~~e~l~~~---~~g 227 (544)
.+.-+-+...+.+.++.... .+ -.+||.||+.+|||+++..+|++.|..++.+|+-.-...+++++.- ..|
T Consensus 867 yIiTPfVqkn~ln~~Ra~s~---~~---fP~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G 940 (4600)
T COG5271 867 YIITPFVQKNYLNTMRAASL---SN---FPLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDG 940 (4600)
T ss_pred eEecHHHHHHHHHHHHHHhh---cC---CcEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCC
Confidence 44445444444444444321 22 3599999999999999999999999999999998877777776642 112
Q ss_pred -cccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHHHHHhcCC-------------
Q 009072 228 -LEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTH------------- 293 (544)
Q Consensus 228 -~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~~~~~~~------------- 293 (544)
+.+. +.++-.+- ++.--|++||+.-.. ..+.++|.++++..+
T Consensus 941 ~lsFk------EGvLVeAl-------------R~GyWIVLDELNLAp-----TDVLEaLNRLLDDNRelfIPETqevV~P 996 (4600)
T COG5271 941 SLSFK------EGVLVEAL-------------RRGYWIVLDELNLAP-----TDVLEALNRLLDDNRELFIPETQEVVVP 996 (4600)
T ss_pred ceeee------hhHHHHHH-------------hcCcEEEeeccccCc-----HHHHHHHHHhhccccceecCCcceeecc
Confidence 2211 11122221 223478999997643 235566776665432
Q ss_pred CcEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-cH
Q 009072 294 IPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGG-DI 372 (544)
Q Consensus 294 ~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~l~~Ia~~s~G-Di 372 (544)
.|-+.+.++.++.. .|..+--.-+++..| ...++|..++.+++..+|... +.+.+.-...|++...| .+
T Consensus 997 Hp~F~lFATQNppg---~YgGRK~LSrAFRNR--FlE~hFddipedEle~ILh~r-----c~iapSyakKiVeVyr~Ls~ 1066 (4600)
T COG5271 997 HPNFRLFATQNPPG---GYGGRKGLSRAFRNR--FLEMHFDDIPEDELEEILHGR-----CEIAPSYAKKIVEVYRGLSS 1066 (4600)
T ss_pred CCCeeEEeecCCCc---cccchHHHHHHHHhh--hHhhhcccCcHHHHHHHHhcc-----CccCHHHHHHHHHHHHHhhh
Confidence 35555554433221 233322222444444 678999999999999998854 55677777777766433 45
Q ss_pred HHHHH
Q 009072 373 RQAIT 377 (544)
Q Consensus 373 R~aIn 377 (544)
|+.++
T Consensus 1067 rRs~~ 1071 (4600)
T COG5271 1067 RRSIN 1071 (4600)
T ss_pred hhhHH
Confidence 55555
No 280
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.71 E-value=8.3e-05 Score=71.58 Aligned_cols=21 Identities=38% Similarity=0.752 Sum_probs=19.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHH
Q 009072 179 NVLVITGQAGVGKTATVRQIA 199 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA 199 (544)
..+||||+||+||||+|+.++
T Consensus 13 ~~~liyG~~G~GKtt~a~~~~ 33 (220)
T TIGR01618 13 NMYLIYGKPGTGKTSTIKYLP 33 (220)
T ss_pred cEEEEECCCCCCHHHHHHhcC
Confidence 679999999999999999986
No 281
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=97.70 E-value=0.00015 Score=72.19 Aligned_cols=102 Identities=20% Similarity=0.326 Sum_probs=63.3
Q ss_pred CCCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhC---CeEEEEeCCCchhhhhhh
Q 009072 145 PRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLG---ARLYEWDTPTPTIWQEYM 221 (544)
Q Consensus 145 P~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg---~~viei~~s~~~~~~e~l 221 (544)
+.+++++...+...+.++.++.. +...++|+||+|+||||+++++..++. ..++.+..+...... ..
T Consensus 56 ~~~l~~lg~~~~~~~~l~~~~~~---------~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~~-~~ 125 (264)
T cd01129 56 ILDLEKLGLKPENLEIFRKLLEK---------PHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQIP-GI 125 (264)
T ss_pred CCCHHHcCCCHHHHHHHHHHHhc---------CCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecCC-Cc
Confidence 45788888888888877766643 125899999999999999999987763 456666655432110 00
Q ss_pred hccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCC
Q 009072 222 HNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPV 271 (544)
Q Consensus 222 ~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~ 271 (544)
.... +. ......+.+.+..+-+ ..|.+|+|+|+..
T Consensus 126 ~q~~--v~-~~~~~~~~~~l~~~lR------------~~PD~i~vgEiR~ 160 (264)
T cd01129 126 NQVQ--VN-EKAGLTFARGLRAILR------------QDPDIIMVGEIRD 160 (264)
T ss_pred eEEE--eC-CcCCcCHHHHHHHHhc------------cCCCEEEeccCCC
Confidence 0000 00 0001134455544432 3488999999976
No 282
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.69 E-value=5.3e-05 Score=81.46 Aligned_cols=64 Identities=17% Similarity=0.342 Sum_probs=51.0
Q ss_pred CCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhC-CeEEEEeC
Q 009072 146 RSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLG-ARLYEWDT 211 (544)
Q Consensus 146 ~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg-~~viei~~ 211 (544)
.-|+|+.|.++.++++.++|........ ...++++|.||||+|||++|+.||+.+. ++++.+.+
T Consensus 73 ~fF~d~yGlee~ieriv~~l~~Aa~gl~--~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg 137 (644)
T PRK15455 73 PAFEEFYGMEEAIEQIVSYFRHAAQGLE--EKKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKA 137 (644)
T ss_pred cchhcccCcHHHHHHHHHHHHHHHHhcC--CCCceEEEecCCCCCchHHHHHHHHHHHhCcceeecC
Confidence 4678999999999999999977665432 2347999999999999999999999873 45555443
No 283
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.68 E-value=0.0015 Score=72.75 Aligned_cols=194 Identities=15% Similarity=0.252 Sum_probs=116.5
Q ss_pred cCCCCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHh--CCeEE--EEeCCCc--hh
Q 009072 143 YKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL--GARLY--EWDTPTP--TI 216 (544)
Q Consensus 143 y~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~el--g~~vi--ei~~s~~--~~ 216 (544)
.+|......+.++.....+.+ +.. .+.+||+-|.|.||||++-.++... +..|. .+..++. .-
T Consensus 13 ~~P~~~~~~v~R~rL~~~L~~----------~~~-~RL~li~APAGfGKttl~aq~~~~~~~~~~v~Wlslde~dndp~r 81 (894)
T COG2909 13 VRPVRPDNYVVRPRLLDRLRR----------AND-YRLILISAPAGFGKTTLLAQWRELAADGAAVAWLSLDESDNDPAR 81 (894)
T ss_pred CCCCCcccccccHHHHHHHhc----------CCC-ceEEEEeCCCCCcHHHHHHHHHHhcCcccceeEeecCCccCCHHH
Confidence 456777788888877777654 222 2899999999999999999998632 33332 2222222 11
Q ss_pred hhhhhh-ccc--------------cCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHH
Q 009072 217 WQEYMH-NCK--------------TGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERL 281 (544)
Q Consensus 217 ~~e~l~-~~~--------------~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~ 281 (544)
+..++. ++. ....+.+...-|..++.++..| ..|..+||||.+.+... .+
T Consensus 82 F~~yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~-----------~~pl~LVlDDyHli~~~----~l 146 (894)
T COG2909 82 FLSYLIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASY-----------EGPLYLVLDDYHLISDP----AL 146 (894)
T ss_pred HHHHHHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhh-----------cCceEEEeccccccCcc----cH
Confidence 222221 110 0111223334566777777766 46899999999998653 23
Q ss_pred HHHHHHHHhcCCCcEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHH
Q 009072 282 RQCLLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQI 361 (544)
Q Consensus 282 ~~~L~~~~~~~~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~l 361 (544)
..+|..+++..+..+.+|+++.......-...+.-. .++. .+...+ ..+.++...++... -+..++...+
T Consensus 147 ~~~l~fLl~~~P~~l~lvv~SR~rP~l~la~lRlr~---~llE-i~~~~L---rf~~eE~~~fl~~~---~~l~Ld~~~~ 216 (894)
T COG2909 147 HEALRFLLKHAPENLTLVVTSRSRPQLGLARLRLRD---ELLE-IGSEEL---RFDTEEAAAFLNDR---GSLPLDAADL 216 (894)
T ss_pred HHHHHHHHHhCCCCeEEEEEeccCCCCcccceeehh---hHHh-cChHhh---cCChHHHHHHHHHc---CCCCCChHHH
Confidence 456777777777777777776543222111111111 1111 011222 45677777777642 3478999999
Q ss_pred HHHHHHcCCcH
Q 009072 362 DLVAQASGGDI 372 (544)
Q Consensus 362 ~~Ia~~s~GDi 372 (544)
+.|++.+.|=+
T Consensus 217 ~~L~~~teGW~ 227 (894)
T COG2909 217 KALYDRTEGWA 227 (894)
T ss_pred HHHHhhcccHH
Confidence 99999999854
No 284
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.68 E-value=0.00034 Score=66.45 Aligned_cols=34 Identities=41% Similarity=0.676 Sum_probs=25.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeCCC
Q 009072 179 NVLVITGQAGVGKTATVRQIASHL---GARLYEWDTPT 213 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~el---g~~viei~~s~ 213 (544)
+..++.||||||||++++.+++.+ |..++-. +|+
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~-apT 55 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGL-APT 55 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEE-ESS
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEE-CCc
Confidence 689999999999999999987665 5555443 444
No 285
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=97.68 E-value=0.002 Score=66.74 Aligned_cols=107 Identities=15% Similarity=0.121 Sum_probs=60.9
Q ss_pred CCceEEEEecCCCCCchhHHHHHHHHHHHHHhcCC-----------Cc--EEEEEccCCCCCCCCccccchHHHHHHHhh
Q 009072 259 KSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTH-----------IP--TAVVLTECGKADSVDSTAQSFEELQSILVD 325 (544)
Q Consensus 259 ~~~~vIlIDEid~l~~~~~~~~~~~~L~~~~~~~~-----------~p--iIiI~t~~~~~~~~d~~~~~l~~l~~ll~r 325 (544)
-++.|+.|||+..+.. .+++.|+..+..+. .| .++|.|. ++.. . +.-.+++.|
T Consensus 143 AnRGIlYvDEvnlL~d-----~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTm-NPEe------G--eLrpqLlDR 208 (423)
T COG1239 143 ANRGILYVDEVNLLDD-----HLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTM-NPEE------G--ELRPQLLDR 208 (423)
T ss_pred ccCCEEEEeccccccH-----HHHHHHHHHHHhCCceeeeCceeeccCccEEEEeec-Cccc------c--ccchhhHhh
Confidence 3467999999998853 46677777776641 13 4444443 3221 1 112567788
Q ss_pred cCceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHH-HHHHHHHHh
Q 009072 326 AGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIR-QAITSLQFS 382 (544)
Q Consensus 326 ~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~l~~Ia~~s~GDiR-~aIn~Lq~~ 382 (544)
++..+=.-.+.+.++...++.+....+ ..++.+-.......-.+| +.++..+.+
T Consensus 209 fg~~v~~~~~~~~~~rv~Ii~r~~~f~---~~Pe~f~~~~~~~~~~lR~~ii~ar~~l 263 (423)
T COG1239 209 FGLEVDTHYPLDLEERVEIIRRRLAFE---AVPEAFLEKYADAQRALRARIIAARSLL 263 (423)
T ss_pred hcceeeccCCCCHHHHHHHHHHHHHhh---cCcHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 766555555667777777777766553 334444444444445666 444444433
No 286
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.68 E-value=0.00032 Score=73.18 Aligned_cols=114 Identities=17% Similarity=0.283 Sum_probs=64.3
Q ss_pred CCCCccEEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeCCCch-hhhhhhhcc---ccCcccccchHHHHHHHHHHHh
Q 009072 174 DKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTPTPT-IWQEYMHNC---KTGLEYTSKLDEFENFVERIRR 246 (544)
Q Consensus 174 g~~~~~~lLL~GPpG~GKTtla~~lA~el---g~~viei~~s~~~-~~~e~l~~~---~~g~~~~s~~~~~~~~l~~~~~ 246 (544)
|-++...++|+||||+||||++..+|..+ +..++.+...+.. ......... ...+... ....+..+++.+..
T Consensus 78 Gi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~-~e~~le~I~~~i~~ 156 (372)
T cd01121 78 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLL-AETNLEDILASIEE 156 (372)
T ss_pred CccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEE-ccCcHHHHHHHHHh
Confidence 56666899999999999999999998765 4567666554322 111111110 0111110 11223444444432
Q ss_pred hcCCCCCCCCCCCCceEEEEecCCCCCch---------hHHHHHHHHHHHHHhcCCCcEEEEE
Q 009072 247 YGSTSPSIPGESKSSAILLIDDLPVTNGR---------TAFERLRQCLLLLVRSTHIPTAVVL 300 (544)
Q Consensus 247 ~~~l~~~~~~~~~~~~vIlIDEid~l~~~---------~~~~~~~~~L~~~~~~~~~piIiI~ 300 (544)
.++.+|+||++..+... ...+.+...|.++.+....++|++.
T Consensus 157 ------------~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~lak~~~itvilvg 207 (372)
T cd01121 157 ------------LKPDLVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFAKERNIPIFIVG 207 (372)
T ss_pred ------------cCCcEEEEcchHHhhccccccCCCCHHHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 24779999999766321 1233444556677776666666553
No 287
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.68 E-value=0.00088 Score=63.61 Aligned_cols=153 Identities=18% Similarity=0.217 Sum_probs=72.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeCCCch--------hhhhhhhccccCcccc-cchHHHHHHHHHHHh
Q 009072 179 NVLVITGQAGVGKTATVRQIASHL---GARLYEWDTPTPT--------IWQEYMHNCKTGLEYT-SKLDEFENFVERIRR 246 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~el---g~~viei~~s~~~--------~~~e~l~~~~~g~~~~-s~~~~~~~~l~~~~~ 246 (544)
+.++|.||+|+||||++--+|..+ +..+.-+..-..| .|.+.+.-........ ...+...+.++....
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~~ 81 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFRK 81 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHhh
Confidence 789999999999999998888765 5555555544333 1111111000001111 112233344444432
Q ss_pred hcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHHHHHhcC-CCcEEEEEccCCCCCCCCccccchHHHHHHHhh
Q 009072 247 YGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRST-HIPTAVVLTECGKADSVDSTAQSFEELQSILVD 325 (544)
Q Consensus 247 ~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~~~~~~-~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r 325 (544)
++.-+||||=.-....... ..+.|.++++.. ...++++++.+. ....+.........
T Consensus 82 ------------~~~D~vlIDT~Gr~~~d~~---~~~el~~~~~~~~~~~~~LVlsa~~-------~~~~~~~~~~~~~~ 139 (196)
T PF00448_consen 82 ------------KGYDLVLIDTAGRSPRDEE---LLEELKKLLEALNPDEVHLVLSATM-------GQEDLEQALAFYEA 139 (196)
T ss_dssp ------------TTSSEEEEEE-SSSSTHHH---HHHHHHHHHHHHSSSEEEEEEEGGG-------GGHHHHHHHHHHHH
T ss_pred ------------cCCCEEEEecCCcchhhHH---HHHHHHHHhhhcCCccceEEEeccc-------ChHHHHHHHHHhhc
Confidence 1234899998766543221 222233333322 223444444321 11122233333344
Q ss_pred cCceeEEecCCCHHHHHHHHHHHHHHhC
Q 009072 326 AGARKVALNPITNGSIKRTLSKICRQEQ 353 (544)
Q Consensus 326 ~~~~~I~f~p~s~~~i~~~L~~i~~~e~ 353 (544)
.+...+-|..++...-...+-.++...+
T Consensus 140 ~~~~~lIlTKlDet~~~G~~l~~~~~~~ 167 (196)
T PF00448_consen 140 FGIDGLILTKLDETARLGALLSLAYESG 167 (196)
T ss_dssp SSTCEEEEESTTSSSTTHHHHHHHHHHT
T ss_pred ccCceEEEEeecCCCCcccceeHHHHhC
Confidence 4466677888876654444444444443
No 288
>PRK04296 thymidine kinase; Provisional
Probab=97.68 E-value=0.00042 Score=65.51 Aligned_cols=33 Identities=21% Similarity=0.337 Sum_probs=26.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeC
Q 009072 179 NVLVITGQAGVGKTATVRQIASHL---GARLYEWDT 211 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~el---g~~viei~~ 211 (544)
...|++||||+||||++..++..+ |..++-++.
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~ 38 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKP 38 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEec
Confidence 578999999999999998888765 566665543
No 289
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.67 E-value=0.00017 Score=76.09 Aligned_cols=61 Identities=21% Similarity=0.359 Sum_probs=48.7
Q ss_pred cCCCCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhCC---eEEEEeCC
Q 009072 143 YKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGA---RLYEWDTP 212 (544)
Q Consensus 143 y~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg~---~viei~~s 212 (544)
+..-++++|...+.....+.+++.. |...+|++||+|+||||+..++.++++- +++.+..|
T Consensus 232 ~~~l~l~~Lg~~~~~~~~~~~~~~~---------p~GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~TiEDP 295 (500)
T COG2804 232 QVILDLEKLGMSPFQLARLLRLLNR---------PQGLILVTGPTGSGKTTTLYAALSELNTPERNIITIEDP 295 (500)
T ss_pred cccCCHHHhCCCHHHHHHHHHHHhC---------CCeEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEeeCC
Confidence 3466789999999999998888865 3379999999999999999999999853 35555444
No 290
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.67 E-value=0.0012 Score=66.14 Aligned_cols=180 Identities=13% Similarity=0.201 Sum_probs=98.0
Q ss_pred hhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHH-HH--HhCCeE--EEEeCCCch--hh-hhhh
Q 009072 150 ELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQI-AS--HLGARL--YEWDTPTPT--IW-QEYM 221 (544)
Q Consensus 150 dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~l-A~--elg~~v--iei~~s~~~--~~-~e~l 221 (544)
-|.|..+...++..|++..... |.. +.+++.||.|+|||+++... +. +.|-.+ +..|+--.. .. .+..
T Consensus 25 ~l~g~~~~~~~l~~~lkqt~~~--gEs--nsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~al~~I~ 100 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQTILH--GES--NSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIALKGIT 100 (408)
T ss_pred ceeehHHHHHHHHHHHHHHHHh--cCC--CceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHHHHHHH
Confidence 3688889999999999887653 333 78999999999999987443 33 555554 344432211 00 0000
Q ss_pred h-----ccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHHHHHhcCCCcE
Q 009072 222 H-----NCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPT 296 (544)
Q Consensus 222 ~-----~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~~~~~~~~pi 296 (544)
. ....+....+..+.+..++...+.-. ...+.+.|.|+||+|...+.. -.-+.--|..+.+..+.|+
T Consensus 101 rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~-------~~t~~~ViFIldEfDlf~~h~-rQtllYnlfDisqs~r~Pi 172 (408)
T KOG2228|consen 101 RQLALELNRIVKSFGSFTENLSKLLEALKKGD-------ETTSGKVIFILDEFDLFAPHS-RQTLLYNLFDISQSARAPI 172 (408)
T ss_pred HHHHHHHhhhheeecccchhHHHHHHHHhcCC-------CCCCceEEEEeehhhccccch-hhHHHHHHHHHHhhcCCCe
Confidence 0 00112233344455555555544311 112335677788999864421 1122233556667777887
Q ss_pred EEEEccCCCCCCCCccccchHHHHH-HHhhcCceeEEe-cCCCHHHHHHHHHHHH
Q 009072 297 AVVLTECGKADSVDSTAQSFEELQS-ILVDAGARKVAL-NPITNGSIKRTLSKIC 349 (544)
Q Consensus 297 IiI~t~~~~~~~~d~~~~~l~~l~~-ll~r~~~~~I~f-~p~s~~~i~~~L~~i~ 349 (544)
.+|..++. ...++.+.. .-+|+.-.+|.+ ++.+-.++..+++..+
T Consensus 173 ciig~Ttr--------ld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 173 CIIGVTTR--------LDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred EEEEeecc--------ccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 66644421 113333322 223443344554 4556778888877765
No 291
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.66 E-value=0.0041 Score=66.15 Aligned_cols=37 Identities=24% Similarity=0.354 Sum_probs=29.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeCCCc
Q 009072 178 TNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTPTP 214 (544)
Q Consensus 178 ~~~lLL~GPpG~GKTtla~~lA~el---g~~viei~~s~~ 214 (544)
+..++|+||+|+||||++..+|..+ |+.+.-+.+...
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~ 134 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTY 134 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCC
Confidence 4789999999999999999999876 667766655443
No 292
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.65 E-value=0.0028 Score=67.47 Aligned_cols=36 Identities=28% Similarity=0.428 Sum_probs=27.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh-----CCeEEEEeCCC
Q 009072 178 TNVLVITGQAGVGKTATVRQIASHL-----GARLYEWDTPT 213 (544)
Q Consensus 178 ~~~lLL~GPpG~GKTtla~~lA~el-----g~~viei~~s~ 213 (544)
++.++|.||+|+||||++..||..+ +..+.-+..-.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~ 261 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDT 261 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCc
Confidence 3689999999999999998887654 35666665543
No 293
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.65 E-value=0.0011 Score=63.24 Aligned_cols=22 Identities=36% Similarity=0.505 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHH
Q 009072 179 NVLVITGQAGVGKTATVRQIAS 200 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~ 200 (544)
+.++|+||+|+||||+++.++.
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~ 47 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGV 47 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHH
Confidence 6899999999999999999984
No 294
>PRK08118 topology modulation protein; Reviewed
Probab=97.63 E-value=4.7e-05 Score=70.45 Aligned_cols=32 Identities=25% Similarity=0.511 Sum_probs=29.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEe
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLGARLYEWD 210 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg~~viei~ 210 (544)
+.+++.||||+||||+|+.|++.++++++.++
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD 33 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLD 33 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecc
Confidence 35899999999999999999999999987765
No 295
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=97.63 E-value=0.00083 Score=67.51 Aligned_cols=161 Identities=21% Similarity=0.252 Sum_probs=93.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCCchhhhhhhhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCC
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGES 258 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~~~~~~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~ 258 (544)
+.++|+||+++|||.++-.||+.++.+++..+... +..++...+.--. .++..
T Consensus 4 ~~i~I~GPTAsGKT~lai~LAk~~~~eIIs~DSmQ----------vYr~mdIGTAKps----~~e~~------------- 56 (308)
T COG0324 4 KLIVIAGPTASGKTALAIALAKRLGGEIISLDSMQ----------VYRGLDIGTAKPS----LEELA------------- 56 (308)
T ss_pred cEEEEECCCCcCHHHHHHHHHHHcCCcEEecchhh----------hcCCCcccCCCCC----HHHHc-------------
Confidence 78999999999999999999999999988765432 1222222110000 11110
Q ss_pred CCceEEEEecCCCCC---chhHHHHHHHHHHHHHhcCCCcEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecC
Q 009072 259 KSSAILLIDDLPVTN---GRTAFERLRQCLLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNP 335 (544)
Q Consensus 259 ~~~~vIlIDEid~l~---~~~~~~~~~~~L~~~~~~~~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p 335 (544)
+-| =.+||.+|-.. ...........+..+...++.|+++=-|. .=+++++. -+...|
T Consensus 57 ~vp-HhliDi~~p~e~ysa~~f~~~a~~~i~~i~~rgk~pIlVGGTg--------------lY~~aL~~-----g~~~~p 116 (308)
T COG0324 57 GVP-HHLIDIRDPTESYSAAEFQRDALAAIDDILARGKLPILVGGTG--------------LYLKALLE-----GLSLLP 116 (308)
T ss_pred CCC-EEEecccCccccccHHHHHHHHHHHHHHHHhCCCCcEEEccHH--------------HHHHHHHc-----CCCCCC
Confidence 112 35677776532 22222233455666667777776643332 11345543 345556
Q ss_pred CCHHHHHHHHHHHHHHhCC--------CCCHHHHHHHHHHcCCcHHHHHHHHHHhccCCCCC
Q 009072 336 ITNGSIKRTLSKICRQEQY--------SLSTEQIDLVAQASGGDIRQAITSLQFSSLKQDPM 389 (544)
Q Consensus 336 ~s~~~i~~~L~~i~~~e~~--------~i~~~~l~~Ia~~s~GDiR~aIn~Lq~~~~~~~~~ 389 (544)
..+..++..+...+...|. .+++... ++.-.+|.|+.+..|+-+-..+.+.
T Consensus 117 ~~~~~~r~~~~~~~~~~g~~~L~~~L~~~Dp~~a---~~i~pnD~~Ri~RALEv~~~tGk~~ 175 (308)
T COG0324 117 EADPEVRRRLEAELAELGNDALHAELKKIDPEAA---AKIHPNDPQRIIRALEVYYLTGKPI 175 (308)
T ss_pred CCCHHHHHHHHHHHHhcCHHHHHHHHHhhCHHHH---HhcCCCchhHHHHHHHHHHHHCCCH
Confidence 6666666666666655542 2333322 3335699999999999988765543
No 296
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.63 E-value=5.9e-05 Score=69.79 Aligned_cols=32 Identities=28% Similarity=0.416 Sum_probs=29.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 009072 178 TNVLVITGQAGVGKTATVRQIASHLGARLYEW 209 (544)
Q Consensus 178 ~~~lLL~GPpG~GKTtla~~lA~elg~~viei 209 (544)
+..++|+||||+||||+++.||+.+|+.++..
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~~~~~d~ 35 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDT 35 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 37899999999999999999999999988753
No 297
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.62 E-value=0.00036 Score=74.69 Aligned_cols=113 Identities=17% Similarity=0.266 Sum_probs=65.6
Q ss_pred CCCCccEEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeCCCch-hhhhhhhcc---ccCcccccchHHHHHHHHHHHh
Q 009072 174 DKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTPTPT-IWQEYMHNC---KTGLEYTSKLDEFENFVERIRR 246 (544)
Q Consensus 174 g~~~~~~lLL~GPpG~GKTtla~~lA~el---g~~viei~~s~~~-~~~e~l~~~---~~g~~~~s~~~~~~~~l~~~~~ 246 (544)
|-++...++|+||||+||||++..+|... +..++.+...+.. ......... ...+... ....+..+++.+..
T Consensus 76 Gi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~-~e~~l~~i~~~i~~ 154 (446)
T PRK11823 76 GLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLL-AETNLEAILATIEE 154 (446)
T ss_pred CccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEe-CCCCHHHHHHHHHh
Confidence 56666799999999999999999998765 6777777654422 111111110 0011111 11223444444432
Q ss_pred hcCCCCCCCCCCCCceEEEEecCCCCCch---------hHHHHHHHHHHHHHhcCCCcEEEE
Q 009072 247 YGSTSPSIPGESKSSAILLIDDLPVTNGR---------TAFERLRQCLLLLVRSTHIPTAVV 299 (544)
Q Consensus 247 ~~~l~~~~~~~~~~~~vIlIDEid~l~~~---------~~~~~~~~~L~~~~~~~~~piIiI 299 (544)
.++.+|+||++..+... ...+.+...|.++.+....+++++
T Consensus 155 ------------~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~~ak~~~itvilv 204 (446)
T PRK11823 155 ------------EKPDLVVIDSIQTMYSPELESAPGSVSQVRECAAELMRLAKQRGIAVFLV 204 (446)
T ss_pred ------------hCCCEEEEechhhhccccccCCCCCHHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 24679999999865321 123344455677777776766665
No 298
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.62 E-value=4.8e-05 Score=67.18 Aligned_cols=32 Identities=25% Similarity=0.473 Sum_probs=29.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEe
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLGARLYEWD 210 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg~~viei~ 210 (544)
+++|++|.|||||||++..||..+|++.+++.
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~~~~~i~is 39 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKTGLEYIEIS 39 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHhCCceEehh
Confidence 57999999999999999999999999988763
No 299
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.60 E-value=5.6e-05 Score=67.82 Aligned_cols=29 Identities=45% Similarity=0.788 Sum_probs=26.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCeEEE
Q 009072 180 VLVITGQAGVGKTATVRQIASHLGARLYE 208 (544)
Q Consensus 180 ~lLL~GPpG~GKTtla~~lA~elg~~vie 208 (544)
.+-+.|||||||||.++.||+++|++++.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCceee
Confidence 47799999999999999999999999874
No 300
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=97.57 E-value=0.00046 Score=71.66 Aligned_cols=28 Identities=25% Similarity=0.264 Sum_probs=24.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhCC
Q 009072 177 STNVLVITGQAGVGKTATVRQIASHLGA 204 (544)
Q Consensus 177 ~~~~lLL~GPpG~GKTtla~~lA~elg~ 204 (544)
+++.+.|+||+|+|||.+.-.+...+..
T Consensus 61 ~~~GlYl~G~vG~GKT~Lmd~f~~~lp~ 88 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTMLMDLFYDSLPI 88 (362)
T ss_pred CCceEEEECCCCCchhHHHHHHHHhCCc
Confidence 4589999999999999999999888754
No 301
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.56 E-value=0.00065 Score=63.45 Aligned_cols=25 Identities=32% Similarity=0.624 Sum_probs=23.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhC
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLG 203 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg 203 (544)
+.++|+|+||+||||+|+.||++|.
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~ 26 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELR 26 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHH
Confidence 4799999999999999999999984
No 302
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.56 E-value=0.00062 Score=65.24 Aligned_cols=39 Identities=26% Similarity=0.277 Sum_probs=32.1
Q ss_pred CCCCccEEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeCC
Q 009072 174 DKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTP 212 (544)
Q Consensus 174 g~~~~~~lLL~GPpG~GKTtla~~lA~el---g~~viei~~s 212 (544)
|-++....+++||||+|||+++..+|.+. |..++.+...
T Consensus 8 Gi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e 49 (209)
T TIGR02237 8 GVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTE 49 (209)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 66667899999999999999999888654 6677777764
No 303
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.56 E-value=0.00098 Score=77.94 Aligned_cols=177 Identities=18% Similarity=0.248 Sum_probs=100.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCCchhhhhhhhccccCc---ccccchHHHHHHHHHHHhhcCCCCCCC
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIWQEYMHNCKTGL---EYTSKLDEFENFVERIRRYGSTSPSIP 255 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~~~~~~e~l~~~~~g~---~~~s~~~~~~~~l~~~~~~~~l~~~~~ 255 (544)
+.+||-|.||+|||+++.++|++.|-.++.+|-++.....+..+....+- .+.-.. ..|+..+
T Consensus 1544 kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~d---apfL~am----------- 1609 (4600)
T COG5271 1544 KPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMD---APFLHAM----------- 1609 (4600)
T ss_pred CceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecc---cHHHHHh-----------
Confidence 67999999999999999999999999999999998765544443211111 000000 1233322
Q ss_pred CCCCCceEEEEecCCCCCchhHHHHHHHHHHHHHhcCC----------CcEEEEEccCCCCCCCCccccchHHHHHHHhh
Q 009072 256 GESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTH----------IPTAVVLTECGKADSVDSTAQSFEELQSILVD 325 (544)
Q Consensus 256 ~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~~~~~~~----------~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r 325 (544)
++..-+++||+.-.+ ++.+.++-.+|. .....- .|.+.|.+..++... ...+--..++++.|
T Consensus 1610 ---r~G~WVlLDEiNLaS-QSVlEGLNacLD-hR~eayIPEld~~f~~HpnfrVFAaqNPq~q---ggGRKgLPkSF~nR 1681 (4600)
T COG5271 1610 ---RDGGWVLLDEINLAS-QSVLEGLNACLD-HRREAYIPELDKTFDVHPNFRVFAAQNPQDQ---GGGRKGLPKSFLNR 1681 (4600)
T ss_pred ---hcCCEEEeehhhhhH-HHHHHHHHHHHh-hccccccccccceeeccCCeeeeeecCchhc---CCCcccCCHHHhhh
Confidence 234578999997643 223333322222 111111 243444443333221 11122223677887
Q ss_pred cCceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH---------------cCC-----cHHHHHHHHHHhc
Q 009072 326 AGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQA---------------SGG-----DIRQAITSLQFSS 383 (544)
Q Consensus 326 ~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~l~~Ia~~---------------s~G-----DiR~aIn~Lq~~~ 383 (544)
..+|....++.++|..++.... ..+.++....|+.. +-| ++|..+..|+.+-
T Consensus 1682 --FsvV~~d~lt~dDi~~Ia~~~y----p~v~~d~~~kiik~ms~lqd~i~k~~~~g~~gsPwefnlrdTLRwl~llN 1753 (4600)
T COG5271 1682 --FSVVKMDGLTTDDITHIANKMY----PQVNEDWRLKIIKFMSRLQDNIEKDISFGSFGSPWEFNLRDTLRWLILLN 1753 (4600)
T ss_pred --hheEEecccccchHHHHHHhhC----CccChHHHHHHHHHHHHHHHhhhhhhcccCCCCCeEEehHHHHHHHHHhh
Confidence 5788899999998887766542 23444443333322 333 4677777777764
No 304
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=97.56 E-value=0.0015 Score=70.05 Aligned_cols=204 Identities=12% Similarity=0.193 Sum_probs=109.4
Q ss_pred hhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeCCCchhhhhhhhcccc
Q 009072 150 ELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTPTPTIWQEYMHNCKT 226 (544)
Q Consensus 150 dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~el---g~~viei~~s~~~~~~e~l~~~~~ 226 (544)
.+++.......+..-+.... . ....++++|.+|+||+++|+++.... +.+++.+++.....
T Consensus 140 ~lig~s~~~~~~~~~i~~~~----~--~~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~---------- 203 (441)
T PRK10365 140 GMVGKSPAMQHLLSEIALVA----P--SEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNE---------- 203 (441)
T ss_pred ceEecCHHHHHHHHHHhhcc----C--CCCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCH----------
Confidence 35666666666555443321 1 12679999999999999999997654 46788888765321
Q ss_pred CcccccchHHHHHHH-HHHH-hhcCCCCCCCC--CCCCceEEEEecCCCCCchhHHHHHHHHHHHHHhcCCC--------
Q 009072 227 GLEYTSKLDEFENFV-ERIR-RYGSTSPSIPG--ESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHI-------- 294 (544)
Q Consensus 227 g~~~~s~~~~~~~~l-~~~~-~~~~l~~~~~~--~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~~~~~~~~-------- 294 (544)
..+...+ .... .+........| ......+|+|||++.+... .+..|..+++....
T Consensus 204 --------~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ldei~~l~~~-----~q~~l~~~l~~~~~~~~~~~~~ 270 (441)
T PRK10365 204 --------SLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISPM-----MQVRLLRAIQEREVQRVGSNQT 270 (441)
T ss_pred --------HHHHHHhcCCCCCCcCCCCcCCCCceeECCCCEEEEeccccCCHH-----HHHHHHHHHccCcEEeCCCCce
Confidence 0111111 0000 00000000000 0123458999999998753 23345555554321
Q ss_pred ---cEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCH--HHHHHHHHHHHHH----hC---CCCCHHHHH
Q 009072 295 ---PTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITN--GSIKRTLSKICRQ----EQ---YSLSTEQID 362 (544)
Q Consensus 295 ---piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~--~~i~~~L~~i~~~----e~---~~i~~~~l~ 362 (544)
.+-+|++++..... ......+ .+.+..+.....|.++|+.. +++..++...+.+ .+ ..++++++.
T Consensus 271 ~~~~~rii~~t~~~~~~-~~~~~~~--~~~l~~~l~~~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~ 347 (441)
T PRK10365 271 ISVDVRLIAATHRDLAA-EVNAGRF--RQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMD 347 (441)
T ss_pred eeeceEEEEeCCCCHHH-HHHcCCc--hHHHHHHhccceecCCChhhcchhHHHHHHHHHHHHHHHhCCCCCCcCHHHHH
Confidence 22344433211000 0000001 12333443455677777643 2455444444432 22 348999999
Q ss_pred HHHHHc-CCcHHHHHHHHHHhccC
Q 009072 363 LVAQAS-GGDIRQAITSLQFSSLK 385 (544)
Q Consensus 363 ~Ia~~s-~GDiR~aIn~Lq~~~~~ 385 (544)
.|.... .||+|...|.++.++..
T Consensus 348 ~L~~~~wpgN~reL~~~~~~~~~~ 371 (441)
T PRK10365 348 LLIHYDWPGNIRELENAVERAVVL 371 (441)
T ss_pred HHHhCCCCCHHHHHHHHHHHHHHh
Confidence 999987 89999999999987753
No 305
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.56 E-value=7.3e-05 Score=66.81 Aligned_cols=29 Identities=28% Similarity=0.637 Sum_probs=25.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCeEEE
Q 009072 180 VLVITGQAGVGKTATVRQIASHLGARLYE 208 (544)
Q Consensus 180 ~lLL~GPpG~GKTtla~~lA~elg~~vie 208 (544)
.++++||||+||||+|+.+++.+++.++.
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~~~~i~ 29 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLGAVVIS 29 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHSTEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCCEEEe
Confidence 47999999999999999999999955543
No 306
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.54 E-value=0.00086 Score=62.80 Aligned_cols=33 Identities=21% Similarity=0.149 Sum_probs=25.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeCC
Q 009072 180 VLVITGQAGVGKTATVRQIASHL---GARLYEWDTP 212 (544)
Q Consensus 180 ~lLL~GPpG~GKTtla~~lA~el---g~~viei~~s 212 (544)
.+|++||||+|||+++..++.+. |..++.+...
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e 36 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLE 36 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECC
Confidence 37899999999999998877653 6666666543
No 307
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.54 E-value=0.0002 Score=74.57 Aligned_cols=164 Identities=15% Similarity=0.188 Sum_probs=77.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh-----CCe--EEEEeCCCchhhhhhhhccccCcccccchHHHHHHHHHHHhhcCCC
Q 009072 179 NVLVITGQAGVGKTATVRQIASHL-----GAR--LYEWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTS 251 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~el-----g~~--viei~~s~~~~~~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~ 251 (544)
..+++.|.||||||.+|-.+|+++ +.. ++..|.+-.....+.+...............+..|+....
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~------ 75 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHPLRNKLREQLAKKYNPKLKKSDFRKPTSFINNYS------ 75 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecchHHHHHHHHHhhhcccchhhhhhhhhHHHHhhcc------
Confidence 579999999999999999999998 222 2333433222222222221100011111122333433322
Q ss_pred CCCCCCCCCceEEEEecCCCCCchhHH---HHHHHHHHHHHhcCCCcEEEEEccCCCCCCCCccccchHHHHHHHhhcCc
Q 009072 252 PSIPGESKSSAILLIDDLPVTNGRTAF---ERLRQCLLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGA 328 (544)
Q Consensus 252 ~~~~~~~~~~~vIlIDEid~l~~~~~~---~~~~~~L~~~~~~~~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~ 328 (544)
..........||||||++.+..+... ....+.|..++...+ ++++.-|........ .....+.+..++.....
T Consensus 76 -~~~~~~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~~k--v~v~f~D~~Q~i~~~-e~~~~~~l~~~~~~~~~ 151 (352)
T PF09848_consen 76 -ESDKEKNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKRAK--VVVFFYDENQSIRPS-EIGTLENLEEIAENLGI 151 (352)
T ss_pred -cccccCCcCCEEEEehhHhhhhccccccccccHHHHHHHHhcCC--EEEEEEccccEeecc-cCCCHHHHHHHHHhcCC
Confidence 00001234579999999998653110 011245667777754 333333322211111 11112223333333222
Q ss_pred e-------eEEecCCCHHHHHHHHHHHHHHh
Q 009072 329 R-------KVALNPITNGSIKRTLSKICRQE 352 (544)
Q Consensus 329 ~-------~I~f~p~s~~~i~~~L~~i~~~e 352 (544)
. .-.|.-....++...+..++...
T Consensus 152 ~~~~~~~L~~q~R~~~~~~~~~wI~~ll~~~ 182 (352)
T PF09848_consen 152 EVRHFFELKTQFRCHGSKEYIDWIDNLLDNK 182 (352)
T ss_pred ccccCcCcCcceecCCCHHHHHHHHHHHhcc
Confidence 1 11233334567788888887654
No 308
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.53 E-value=0.00083 Score=60.86 Aligned_cols=43 Identities=14% Similarity=0.276 Sum_probs=29.2
Q ss_pred CceEEEEecCCCCCchhHHHHHHHHHHHHHhcCCCcEEEEEcc
Q 009072 260 SSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPTAVVLTE 302 (544)
Q Consensus 260 ~~~vIlIDEid~l~~~~~~~~~~~~L~~~~~~~~~piIiI~t~ 302 (544)
.|.|+++||+-..-....-+.+-+.+..++..-...+++|.-+
T Consensus 151 ~P~ILLLDE~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd 193 (223)
T COG4619 151 MPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWITHD 193 (223)
T ss_pred CCceEEecCchhhcChhhHHHHHHHHHHHhhhhceEEEEEecC
Confidence 5889999999765333333556677888887666667777643
No 309
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.52 E-value=0.00022 Score=67.94 Aligned_cols=34 Identities=21% Similarity=0.526 Sum_probs=27.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhC----CeEEEEeCC
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLG----ARLYEWDTP 212 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg----~~viei~~s 212 (544)
..++++||+|+||||++++++.++. ..++.+..+
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~ 39 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDP 39 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCC
Confidence 5799999999999999999998874 344555444
No 310
>PRK10436 hypothetical protein; Provisional
Probab=97.52 E-value=0.00046 Score=73.89 Aligned_cols=60 Identities=22% Similarity=0.409 Sum_probs=47.2
Q ss_pred CCCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeCCC
Q 009072 145 PRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTPT 213 (544)
Q Consensus 145 P~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~el---g~~viei~~s~ 213 (544)
+.++++|...+...+.++..+.. +...+|++||+|+||||++.++.+++ +..++.+..|.
T Consensus 194 ~~~L~~LG~~~~~~~~l~~~~~~---------~~GliLvtGpTGSGKTTtL~a~l~~~~~~~~~i~TiEDPv 256 (462)
T PRK10436 194 ALDLETLGMTPAQLAQFRQALQQ---------PQGLILVTGPTGSGKTVTLYSALQTLNTAQINICSVEDPV 256 (462)
T ss_pred CCCHHHcCcCHHHHHHHHHHHHh---------cCCeEEEECCCCCChHHHHHHHHHhhCCCCCEEEEecCCc
Confidence 34788999888888888877654 22689999999999999999888876 34567776664
No 311
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=97.51 E-value=0.026 Score=59.41 Aligned_cols=128 Identities=21% Similarity=0.267 Sum_probs=74.8
Q ss_pred CceEEEEecCCCC---CchhHHHHHHHHHHHHHhc---CCCc-EEEEEccCCCCC-CCCccccchHHHHHHHh-------
Q 009072 260 SSAILLIDDLPVT---NGRTAFERLRQCLLLLVRS---THIP-TAVVLTECGKAD-SVDSTAQSFEELQSILV------- 324 (544)
Q Consensus 260 ~~~vIlIDEid~l---~~~~~~~~~~~~L~~~~~~---~~~p-iIiI~t~~~~~~-~~d~~~~~l~~l~~ll~------- 324 (544)
+..+|+|||+.++ ....+..+..+.|+++++. ++.| +.++.+.+..-- ....-..+++.|.+.+.
T Consensus 239 ~GLlI~lDE~e~l~kl~~~~~R~~~ye~lr~lidd~~~G~~~gL~~~~~gTPef~eD~rrGv~sY~AL~~RL~~~~~~~~ 318 (416)
T PF10923_consen 239 KGLLILLDELENLYKLRNDQAREKNYEALRQLIDDIDQGRAPGLYFVFAGTPEFFEDGRRGVYSYEALAQRLAEEFFADD 318 (416)
T ss_pred CceEEEEechHHHHhcCChHHHHHHHHHHHHHHHHHhcCCCCceEEEEeeCHHHhhCccccccccHHHHHHHhccccccc
Confidence 5679999999976 2222233444566666543 3334 333344332111 01111234444544442
Q ss_pred ---hcCceeEEecCCCHHHHHHHHHHHHHHh------CCCCCHHHHHHHHHHcC----Cc--------HHHHHHHHHHhc
Q 009072 325 ---DAGARKVALNPITNGSIKRTLSKICRQE------QYSLSTEQIDLVAQASG----GD--------IRQAITSLQFSS 383 (544)
Q Consensus 325 ---r~~~~~I~f~p~s~~~i~~~L~~i~~~e------~~~i~~~~l~~Ia~~s~----GD--------iR~aIn~Lq~~~ 383 (544)
.++.-+|.+.|++++++..++.++..-. ...++++.+..+++.+. |+ ||..|+.|.-+.
T Consensus 319 ~~~n~~~pvIrL~~l~~eel~~l~~klr~i~a~~~~~~~~v~d~~l~~~~~~~~~r~G~~~~~tPR~~ik~fv~~Ld~~~ 398 (416)
T PF10923_consen 319 GFDNLRAPVIRLQPLTPEELLELLEKLRDIYAEAYGYESRVDDEELKAFAQHVAGRLGGDVFVTPREFIKDFVDVLDILE 398 (416)
T ss_pred cccCccCceecCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhccCcccccCHHHHHHHHHHHHHHHH
Confidence 1245689999999999999988886532 34688999998887643 33 456666666665
Q ss_pred cCCC
Q 009072 384 LKQD 387 (544)
Q Consensus 384 ~~~~ 387 (544)
.+++
T Consensus 399 q~p~ 402 (416)
T PF10923_consen 399 QNPD 402 (416)
T ss_pred HCCC
Confidence 5443
No 312
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.51 E-value=0.00093 Score=69.36 Aligned_cols=25 Identities=36% Similarity=0.610 Sum_probs=22.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 009072 178 TNVLVITGQAGVGKTATVRQIASHL 202 (544)
Q Consensus 178 ~~~lLL~GPpG~GKTtla~~lA~el 202 (544)
..+++|.||+|+||||++..||..+
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3799999999999999999999764
No 313
>PRK07914 hypothetical protein; Reviewed
Probab=97.51 E-value=0.0056 Score=62.84 Aligned_cols=147 Identities=12% Similarity=0.117 Sum_probs=94.6
Q ss_pred CceEEEEecCCCCCchhHHHHHHHHHHHHHhcCCCcEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCC-CH
Q 009072 260 SSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPI-TN 338 (544)
Q Consensus 260 ~~~vIlIDEid~l~~~~~~~~~~~~L~~~~~~~~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~-s~ 338 (544)
.+.+|++++...... ...+.|..+++......++|+..... . ... ...+. +...++..+.|.++ +.
T Consensus 64 ~rRlV~v~~~~~~~~-----~~~~~l~~~l~~~~~~t~lil~~~~~----~-~~k--k~~K~-L~k~g~~~v~~~~~~~~ 130 (320)
T PRK07914 64 EERVVVLEAAAEAGK-----DAAALILSAAADLPPGTVLVVVHSGG----G-RAK--ALANQ-LRKLGAEVHPCARITKA 130 (320)
T ss_pred CceEEEEeChHhccH-----HHHHHHHHHHhCCCCCeEEEEEecCC----c-chh--HHHHH-HHHCCCEEEecCCCCCH
Confidence 366889998754321 12345677776644323333322111 1 111 11122 23224568999999 99
Q ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHhccCCCCCccccccCCCCCCCCccCCCCCCccccccc
Q 009072 339 GSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIRQAITSLQFSSLKQDPMLNLSLSISKPNFPEEKADGHGGFSIQFGR 418 (544)
Q Consensus 339 ~~i~~~L~~i~~~e~~~i~~~~l~~Ia~~s~GDiR~aIn~Lq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 418 (544)
.++.+.+...+...|+.+++++++.|++..+||+..+-+.|+-++...+.... .+.......+
T Consensus 131 ~~l~~wi~~~a~~~g~~i~~~A~~~L~~~~g~dl~~l~~EleKL~~~~~~~It-----------------~e~V~~~v~~ 193 (320)
T PRK07914 131 AERADFVRKEFRSLRVKVDDDTVTALLDAVGSDLRELASACSQLVADTGGAVD-----------------AAAVRRYHSG 193 (320)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHCccHHHHHHHHHHHhcCCCCCcC-----------------HHHHHHHcCC
Confidence 99999999999999999999999999999999999999999977653221111 1112233345
Q ss_pred cccchhhHhhhhhhcccc
Q 009072 419 DETLSLFHALGKFLHNKR 436 (544)
Q Consensus 419 D~~l~lF~algkil~~Kr 436 (544)
....++|+.+..++.++.
T Consensus 194 ~~~~~vf~L~dAi~~g~~ 211 (320)
T PRK07914 194 KAEVKGFDIADKAVAGDV 211 (320)
T ss_pred CeechHHHHHHHHHCCCH
Confidence 556788888877776654
No 314
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.50 E-value=0.0063 Score=62.96 Aligned_cols=36 Identities=31% Similarity=0.417 Sum_probs=28.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeCCC
Q 009072 178 TNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTPT 213 (544)
Q Consensus 178 ~~~lLL~GPpG~GKTtla~~lA~el---g~~viei~~s~ 213 (544)
++.++|.||+|+||||++..+|..+ |..+.-+.+-.
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDt 244 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDT 244 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCc
Confidence 4799999999999999999999765 56666555533
No 315
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.50 E-value=0.00031 Score=69.17 Aligned_cols=26 Identities=23% Similarity=0.291 Sum_probs=23.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCC
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLGA 204 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg~ 204 (544)
..++|.||+||||||+++.+++.+..
T Consensus 17 qr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 17 QRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccc
Confidence 67999999999999999999998754
No 316
>PRK05629 hypothetical protein; Validated
Probab=97.49 E-value=0.0066 Score=62.23 Aligned_cols=145 Identities=6% Similarity=0.033 Sum_probs=93.3
Q ss_pred CceEEEEecCCCCCchhHHHHHHHHHHHHHhcCCCc-EEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCH
Q 009072 260 SSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIP-TAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITN 338 (544)
Q Consensus 260 ~~~vIlIDEid~l~~~~~~~~~~~~L~~~~~~~~~p-iIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~ 338 (544)
.+.+|+++..+..... ..+.+..++...... +++++.. .. +. .-...+. +.. ....+.|.++.+
T Consensus 64 ~~rlV~v~~~~~~~~~-----~~~~l~~~l~~~~~~~~Lil~~~-~~----~~---~kk~~K~-l~k-~~~~ve~~~~~~ 128 (318)
T PRK05629 64 EDRVIVLTNMEQAGKE-----PTDLALSAAVDPSPGIYLIIMHS-GG----GR---TKSMVPK-LEK-IAVVHEAAKLKP 128 (318)
T ss_pred CceEEEEeChHhcChh-----HHHHHHHHHhCCCCCeEEEEEcC-Cc----ch---hhHHHHH-HHh-cceEeeCCCCCH
Confidence 3578999987653221 123355555544333 3333332 11 11 1111122 222 267899999999
Q ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHhccCCCCCccccccCCCCCCCCccCCCCCCccccccc
Q 009072 339 GSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIRQAITSLQFSSLKQDPMLNLSLSISKPNFPEEKADGHGGFSIQFGR 418 (544)
Q Consensus 339 ~~i~~~L~~i~~~e~~~i~~~~l~~Ia~~s~GDiR~aIn~Lq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 418 (544)
.++...+...+...|+.+++++++.|++.+++|+..+-+.++-++...+.... .+....+...
T Consensus 129 ~~l~~wi~~~~~~~g~~i~~~A~~~L~~~~g~dl~~l~~EleKL~~~~~~~It-----------------~e~V~~~v~~ 191 (318)
T PRK05629 129 RERPGWVTQEFKNHGVRPTPDVVHALLEGVGSDLRELASAISQLVEDTQGNVT-----------------VEKVRAYYVG 191 (318)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHCccHHHHHHHHHHHHhcCCCCcC-----------------HHHHHHHhCC
Confidence 99999999999999999999999999999999999999999977653221111 1112233344
Q ss_pred cccchhhHhhhhhhcccc
Q 009072 419 DETLSLFHALGKFLHNKR 436 (544)
Q Consensus 419 D~~l~lF~algkil~~Kr 436 (544)
....++|+.+..++.++.
T Consensus 192 ~~~~~iF~l~dAv~~g~~ 209 (318)
T PRK05629 192 VAEVSGFDIADLACAGQV 209 (318)
T ss_pred CccchHHHHHHHHHcCCH
Confidence 566788888888887654
No 317
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.49 E-value=0.0033 Score=65.10 Aligned_cols=173 Identities=20% Similarity=0.241 Sum_probs=86.9
Q ss_pred hhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhC-----CeEEEEeCCCchh-hhhhhh-
Q 009072 150 ELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLG-----ARLYEWDTPTPTI-WQEYMH- 222 (544)
Q Consensus 150 dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg-----~~viei~~s~~~~-~~e~l~- 222 (544)
++..-.++...+..|+.+.. . ..+++.+.|.||+|+||||++--||..+. ..+--+..-+.|. ..+.+.
T Consensus 179 ~~~~~~~~l~~~~~~~~~~~-~---~~~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~ 254 (407)
T COG1419 179 DLRYFSEKLRKLLLSLIENL-I---VEQKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKT 254 (407)
T ss_pred hhhhHHHHHHHHHHhhcccc-c---cccCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHH
Confidence 33334455555555554432 0 11248999999999999999887877654 2222222222221 011110
Q ss_pred ---ccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHHHHHhcCC-CcEEE
Q 009072 223 ---NCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTH-IPTAV 298 (544)
Q Consensus 223 ---~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~~~~~~~-~piIi 298 (544)
-..-.+...-....|...+.... ...+||+|=+-+-.... . ...-|..++..+. .-+.+
T Consensus 255 Ya~im~vp~~vv~~~~el~~ai~~l~--------------~~d~ILVDTaGrs~~D~--~-~i~el~~~~~~~~~i~~~L 317 (407)
T COG1419 255 YADIMGVPLEVVYSPKELAEAIEALR--------------DCDVILVDTAGRSQYDK--E-KIEELKELIDVSHSIEVYL 317 (407)
T ss_pred HHHHhCCceEEecCHHHHHHHHHHhh--------------cCCEEEEeCCCCCccCH--H-HHHHHHHHHhccccceEEE
Confidence 00111122223344555554443 23599999886643321 1 1233556655552 22333
Q ss_pred EEccCCCCCCCCccccchHHHHHHHhhc---CceeEEecCCCHHHHHHHHHHHHHHhC
Q 009072 299 VLTECGKADSVDSTAQSFEELQSILVDA---GARKVALNPITNGSIKRTLSKICRQEQ 353 (544)
Q Consensus 299 I~t~~~~~~~~d~~~~~l~~l~~ll~r~---~~~~I~f~p~s~~~i~~~L~~i~~~e~ 353 (544)
+++.+. ...++..++.++ ....+-|..++.+....-+-.++...+
T Consensus 318 vlsat~----------K~~dlkei~~~f~~~~i~~~I~TKlDET~s~G~~~s~~~e~~ 365 (407)
T COG1419 318 VLSATT----------KYEDLKEIIKQFSLFPIDGLIFTKLDETTSLGNLFSLMYETR 365 (407)
T ss_pred EEecCc----------chHHHHHHHHHhccCCcceeEEEcccccCchhHHHHHHHHhC
Confidence 333321 334556655543 355677888877766665655555443
No 318
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=97.49 E-value=0.00041 Score=74.99 Aligned_cols=61 Identities=21% Similarity=0.373 Sum_probs=47.1
Q ss_pred CCCCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhC---CeEEEEeCCC
Q 009072 144 KPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLG---ARLYEWDTPT 213 (544)
Q Consensus 144 ~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg---~~viei~~s~ 213 (544)
.+.++++|...++..+.++..+.. +...++++||+|+||||+++++..++. ..++.+..|.
T Consensus 217 ~~~~l~~Lg~~~~~~~~l~~~~~~---------~~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpv 280 (486)
T TIGR02533 217 VRLDLETLGMSPELLSRFERLIRR---------PHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPV 280 (486)
T ss_pred CCCCHHHcCCCHHHHHHHHHHHhc---------CCCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCe
Confidence 456889999888888888776643 225799999999999999998888764 4566666554
No 319
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.47 E-value=0.00092 Score=61.97 Aligned_cols=35 Identities=23% Similarity=0.367 Sum_probs=29.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCC
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLGARLYEWDTPT 213 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~ 213 (544)
..++++||||+|||++|..++.+++.+++.+....
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~ 36 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAAQSGLQVLYIATAQ 36 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCC
Confidence 36899999999999999999999887777666543
No 320
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=97.46 E-value=9e-05 Score=67.40 Aligned_cols=30 Identities=37% Similarity=0.689 Sum_probs=27.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCeEEEEe
Q 009072 180 VLVITGQAGVGKTATVRQIASHLGARLYEWD 210 (544)
Q Consensus 180 ~lLL~GPpG~GKTtla~~lA~elg~~viei~ 210 (544)
.++++|.||+||||+++.|+ ++|+.+++.+
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~ 31 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELGYKVIELN 31 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhCCceeeHH
Confidence 58999999999999999999 9999988764
No 321
>PRK03839 putative kinase; Provisional
Probab=97.46 E-value=0.00011 Score=68.62 Aligned_cols=30 Identities=37% Similarity=0.646 Sum_probs=27.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 009072 180 VLVITGQAGVGKTATVRQIASHLGARLYEW 209 (544)
Q Consensus 180 ~lLL~GPpG~GKTtla~~lA~elg~~viei 209 (544)
.++|.|+||+||||+++.||+.++++++..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~ 31 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDL 31 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 489999999999999999999999988754
No 322
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.46 E-value=0.0014 Score=63.30 Aligned_cols=39 Identities=28% Similarity=0.297 Sum_probs=31.8
Q ss_pred CCCCccEEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeCC
Q 009072 174 DKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTP 212 (544)
Q Consensus 174 g~~~~~~lLL~GPpG~GKTtla~~lA~el---g~~viei~~s 212 (544)
|-++...++++||||+|||+++..+|.+. |..++.+...
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e 56 (218)
T cd01394 15 GVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTE 56 (218)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 66666889999999999999999998775 5677666553
No 323
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=97.46 E-value=0.00014 Score=80.50 Aligned_cols=53 Identities=21% Similarity=0.356 Sum_probs=45.8
Q ss_pred ccCCCCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhCC
Q 009072 142 KYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGA 204 (544)
Q Consensus 142 ky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg~ 204 (544)
.-+|..+++++++++.+..|...+... ++++|+|||||||||+++++++.+..
T Consensus 24 ~~~~~~~~~vigq~~a~~~L~~~~~~~----------~~~l~~G~~G~GKttla~~l~~~l~~ 76 (637)
T PRK13765 24 EVPERLIDQVIGQEHAVEVIKKAAKQR----------RHVMMIGSPGTGKSMLAKAMAELLPK 76 (637)
T ss_pred ccCcccHHHcCChHHHHHHHHHHHHhC----------CeEEEECCCCCcHHHHHHHHHHHcCh
Confidence 455789999999999999988877652 47999999999999999999998763
No 324
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.45 E-value=0.001 Score=64.52 Aligned_cols=39 Identities=28% Similarity=0.295 Sum_probs=31.8
Q ss_pred CCCCccEEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeCC
Q 009072 174 DKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTP 212 (544)
Q Consensus 174 g~~~~~~lLL~GPpG~GKTtla~~lA~el---g~~viei~~s 212 (544)
|-+.....+++||||+|||+++..+|.+. +..++.+...
T Consensus 19 Gi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 19 GFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 55666799999999999999999998754 6777766654
No 325
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=97.44 E-value=0.00025 Score=70.97 Aligned_cols=107 Identities=17% Similarity=0.321 Sum_probs=63.8
Q ss_pred CCCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhC---CeEEEEeCCCchhhhhhh
Q 009072 145 PRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLG---ARLYEWDTPTPTIWQEYM 221 (544)
Q Consensus 145 P~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg---~~viei~~s~~~~~~e~l 221 (544)
+-++++|.......+++.++|..... ....++++||+|+||||++.+++.++. ..++.+..+...... ..
T Consensus 100 ~~sle~l~~~~~~~~~~~~~l~~~v~------~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~l~-~~ 172 (270)
T PF00437_consen 100 PFSLEDLGESGSIPEEIAEFLRSAVR------GRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELRLP-GP 172 (270)
T ss_dssp --CHCCCCHTHHCHHHHHHHHHHCHH------TTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S--S-CS
T ss_pred cccHhhccCchhhHHHHHHHHhhccc------cceEEEEECCCccccchHHHHHhhhccccccceEEeccccceeec-cc
Confidence 34788888888888888888877533 127899999999999999999999873 456666654422110 00
Q ss_pred hccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCC
Q 009072 222 HNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVT 272 (544)
Q Consensus 222 ~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l 272 (544)
... ..........+.+.+..+-+ ..|.+|+|.|+-..
T Consensus 173 ~~~--~~~~~~~~~~~~~~l~~~LR------------~~pD~iiigEiR~~ 209 (270)
T PF00437_consen 173 NQI--QIQTRRDEISYEDLLKSALR------------QDPDVIIIGEIRDP 209 (270)
T ss_dssp SEE--EEEEETTTBSHHHHHHHHTT------------S--SEEEESCE-SC
T ss_pred ceE--EEEeecCcccHHHHHHHHhc------------CCCCcccccccCCH
Confidence 000 00000112234455554422 34789999999863
No 326
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=97.44 E-value=0.0015 Score=68.09 Aligned_cols=23 Identities=22% Similarity=0.329 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 009072 179 NVLVITGQAGVGKTATVRQIASH 201 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~e 201 (544)
-++++.||+|||||+++.+++..
T Consensus 210 ~Nli~lGp~GTGKThla~~l~~~ 232 (449)
T TIGR02688 210 YNLIELGPKGTGKSYIYNNLSPY 232 (449)
T ss_pred CcEEEECCCCCCHHHHHHHHhHH
Confidence 57999999999999999998776
No 327
>PF00519 PPV_E1_C: Papillomavirus helicase; InterPro: IPR001177 Papillomaviruses are a large family of DNA tumour viruses which give rise to warts in their host species. The helicase E1 protein is an ATP-dependent DNA helicase required for initiation of viral DNA replication []. It forms a complex with the viral E2 protein, which is a site-specific DNA-binding transcriptional activator. The E1-E2 complex binds to the replication origin which contains binding sites for both proteins []. The E1 protein is a 70 kDa polypeptide with a central DNA-binding domain and a C-terminal ATPase/helicase domain. It binds specific 18 bp DNA sequences at the origin of replication, melts the DNA duplex and functions as a 3' to 5' helicase []. In addition to E2 it also interacts with DNA polymerase alpha and replication protein A to effect DNA replication. The DNA-binding domain forms a five-stranded antiparallel beta sheet bordered by four loosely packed alpha helices on one side and two tightly packed helices on the other []. Two structural modules within this domain, an extended loop and a helix, contain conserved residues and are critical for DNA binding. In solution E1 is a monomer, but binds DNA as a dimer. Recruitment of more E1 subunits to the complex leads to melting of the origin and ultimately to the formation of an E1 hexamer with helicase activity []. The entry represents the C-terminal region of E1, containing both the DNA-binding and ATPase/helical domains.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1TUE_K 1R9W_A 2V9P_B 2GXA_I 1KSX_J 1KSY_A 1F08_B.
Probab=97.43 E-value=0.0005 Score=70.29 Aligned_cols=44 Identities=20% Similarity=0.363 Sum_probs=37.3
Q ss_pred CCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCCchhh
Q 009072 174 DKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIW 217 (544)
Q Consensus 174 g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~~~~~ 217 (544)
|.|.++.++|+|||+||||..+..|.+-++..|+..-++....|
T Consensus 258 g~PKKnClvi~GPPdTGKS~F~~SLi~Fl~GkViSf~Ns~ShFW 301 (432)
T PF00519_consen 258 GIPKKNCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNSKSHFW 301 (432)
T ss_dssp TBTTSSEEEEESSCCCSHHHHHHHHHHHHTSEEE-GGGTTSCGG
T ss_pred CCCcccEEEEECCCCCchhHHHHHHHHHhCCEEEEecCCCCccc
Confidence 77777899999999999999999999999999998766655444
No 328
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=97.42 E-value=0.018 Score=58.67 Aligned_cols=49 Identities=8% Similarity=0.091 Sum_probs=39.0
Q ss_pred ceeEEecCCCHHHHHHHHHHHHHHhCC---CCCHHHHHHHHHHcCCcHHHHH
Q 009072 328 ARKVALNPITNGSIKRTLSKICRQEQY---SLSTEQIDLVAQASGGDIRQAI 376 (544)
Q Consensus 328 ~~~I~f~p~s~~~i~~~L~~i~~~e~~---~i~~~~l~~Ia~~s~GDiR~aI 376 (544)
...|+..+++.++++.++.......-+ ..+....+.+...++|++|...
T Consensus 256 ~~~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el~ 307 (309)
T PF10236_consen 256 VKPIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPRELE 307 (309)
T ss_pred CceEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHhc
Confidence 458999999999999999987765433 3467778888888999999753
No 329
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=97.42 E-value=0.00035 Score=70.86 Aligned_cols=62 Identities=15% Similarity=0.225 Sum_probs=39.6
Q ss_pred CCCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHh-----CCeEEEEeCC
Q 009072 145 PRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL-----GARLYEWDTP 212 (544)
Q Consensus 145 P~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~el-----g~~viei~~s 212 (544)
|.++++|+...-.-.+...+|..... ..+.+|++||+|+||||++++++..+ +..++.+..+
T Consensus 105 ~~tl~~l~~~g~~~~~~~~~L~~~v~------~~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~ 171 (299)
T TIGR02782 105 VFTLDDYVEAGIMTAAQRDVLREAVL------ARKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDT 171 (299)
T ss_pred CCCHHHHHhcCCCCHHHHHHHHHHHH------cCCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCc
Confidence 44667765332222233444544433 12689999999999999999999987 3456555543
No 330
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.41 E-value=0.0013 Score=66.94 Aligned_cols=39 Identities=18% Similarity=0.148 Sum_probs=30.3
Q ss_pred CCCCccEEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeCC
Q 009072 174 DKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTP 212 (544)
Q Consensus 174 g~~~~~~lLL~GPpG~GKTtla~~lA~el---g~~viei~~s 212 (544)
|-++...++|+||||+||||++..++.+. |..++.+.+.
T Consensus 51 Glp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E 92 (321)
T TIGR02012 51 GLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAE 92 (321)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEccc
Confidence 66777899999999999999987776554 5666666543
No 331
>PRK13947 shikimate kinase; Provisional
Probab=97.41 E-value=0.00015 Score=67.17 Aligned_cols=32 Identities=28% Similarity=0.456 Sum_probs=28.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEe
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLGARLYEWD 210 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg~~viei~ 210 (544)
+.++|.|+|||||||+++.||+.+|++++...
T Consensus 2 ~~I~l~G~~GsGKst~a~~La~~lg~~~id~d 33 (171)
T PRK13947 2 KNIVLIGFMGTGKTTVGKRVATTLSFGFIDTD 33 (171)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 36999999999999999999999999987543
No 332
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.41 E-value=0.00061 Score=70.57 Aligned_cols=34 Identities=21% Similarity=0.546 Sum_probs=27.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhC----CeEEEEeCC
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLG----ARLYEWDTP 212 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg----~~viei~~s 212 (544)
..++++||+|+||||++++++.++. ..++.+..|
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp 160 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDP 160 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCC
Confidence 6899999999999999999998764 345555544
No 333
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.40 E-value=0.0027 Score=58.89 Aligned_cols=34 Identities=35% Similarity=0.533 Sum_probs=27.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeCCC
Q 009072 180 VLVITGQAGVGKTATVRQIASHL---GARLYEWDTPT 213 (544)
Q Consensus 180 ~lLL~GPpG~GKTtla~~lA~el---g~~viei~~s~ 213 (544)
.++++||||+||||++..+|..+ |..+.-+....
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~ 38 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADT 38 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Confidence 57899999999999999998875 67777666543
No 334
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.40 E-value=0.01 Score=63.96 Aligned_cols=25 Identities=32% Similarity=0.660 Sum_probs=22.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 009072 178 TNVLVITGQAGVGKTATVRQIASHL 202 (544)
Q Consensus 178 ~~~lLL~GPpG~GKTtla~~lA~el 202 (544)
.+.+.|.||+|+||||++..||..+
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~l 374 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRF 374 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 3789999999999999999988754
No 335
>PRK00625 shikimate kinase; Provisional
Probab=97.39 E-value=0.00016 Score=67.25 Aligned_cols=31 Identities=26% Similarity=0.433 Sum_probs=28.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCeEEEEe
Q 009072 180 VLVITGQAGVGKTATVRQIASHLGARLYEWD 210 (544)
Q Consensus 180 ~lLL~GPpG~GKTtla~~lA~elg~~viei~ 210 (544)
.++|+|+||+||||+++.+|+.++++++..+
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 5899999999999999999999999987654
No 336
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=97.39 E-value=0.0023 Score=62.71 Aligned_cols=40 Identities=20% Similarity=0.336 Sum_probs=31.6
Q ss_pred CCCCccEEEEEcCCCCcHHHHHHHHHHHh----CCeEEEEeCCC
Q 009072 174 DKFSTNVLVITGQAGVGKTATVRQIASHL----GARLYEWDTPT 213 (544)
Q Consensus 174 g~~~~~~lLL~GPpG~GKTtla~~lA~el----g~~viei~~s~ 213 (544)
|.++...++|.||||+|||+++..+|... |.+++.+....
T Consensus 9 Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~ 52 (242)
T cd00984 9 GLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEM 52 (242)
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCC
Confidence 56666799999999999999988776654 77877776544
No 337
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=97.39 E-value=0.0028 Score=59.58 Aligned_cols=19 Identities=37% Similarity=0.588 Sum_probs=18.2
Q ss_pred EEEEcCCCCcHHHHHHHHH
Q 009072 181 LVITGQAGVGKTATVRQIA 199 (544)
Q Consensus 181 lLL~GPpG~GKTtla~~lA 199 (544)
++|+||.|+||||+++.++
T Consensus 2 ~~ltG~N~~GKst~l~~i~ 20 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVG 20 (185)
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 7899999999999999998
No 338
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.38 E-value=0.0014 Score=63.46 Aligned_cols=24 Identities=33% Similarity=0.519 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 009072 179 NVLVITGQAGVGKTATVRQIASHL 202 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~el 202 (544)
-.+-|.||+||||||+.+++|.-.
T Consensus 30 EfvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 30 EFVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 579999999999999999999765
No 339
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.36 E-value=0.0029 Score=61.75 Aligned_cols=39 Identities=18% Similarity=0.258 Sum_probs=28.1
Q ss_pred CCCCccEEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeCC
Q 009072 174 DKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTP 212 (544)
Q Consensus 174 g~~~~~~lLL~GPpG~GKTtla~~lA~el---g~~viei~~s 212 (544)
|-++...+++.|||||||||++..++..+ |..++.+...
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e 61 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQ 61 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCC
Confidence 44555799999999999999975554433 5666666543
No 340
>PRK05973 replicative DNA helicase; Provisional
Probab=97.35 E-value=0.0022 Score=62.46 Aligned_cols=38 Identities=16% Similarity=0.170 Sum_probs=29.7
Q ss_pred CCCCccEEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeC
Q 009072 174 DKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDT 211 (544)
Q Consensus 174 g~~~~~~lLL~GPpG~GKTtla~~lA~el---g~~viei~~ 211 (544)
|-++...++|.|+||+|||+++-.+|.+. |.+++.+..
T Consensus 60 Gl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSl 100 (237)
T PRK05973 60 QLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTL 100 (237)
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEE
Confidence 56666799999999999999998877654 766655543
No 341
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=97.35 E-value=0.00079 Score=74.36 Aligned_cols=102 Identities=12% Similarity=0.205 Sum_probs=64.4
Q ss_pred CCCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhC---CeEEEEeCCCchhhhhhh
Q 009072 145 PRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLG---ARLYEWDTPTPTIWQEYM 221 (544)
Q Consensus 145 P~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg---~~viei~~s~~~~~~e~l 221 (544)
+.++++|...+...+.+.+.+.. +...+|++||+|+||||+..++.++++ ..++.+..|....+. .+
T Consensus 292 ~~~l~~lg~~~~~~~~l~~~~~~---------~~Glilv~G~tGSGKTTtl~a~l~~~~~~~~~i~tiEdpvE~~~~-~~ 361 (564)
T TIGR02538 292 QLDIDKLGFEPDQKALFLEAIHK---------PQGMVLVTGPTGSGKTVSLYTALNILNTEEVNISTAEDPVEINLP-GI 361 (564)
T ss_pred cCCHHHcCCCHHHHHHHHHHHHh---------cCCeEEEECCCCCCHHHHHHHHHHhhCCCCceEEEecCCceecCC-Cc
Confidence 45788999999888888777654 226899999999999999999888874 356666655422110 11
Q ss_pred hccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCC
Q 009072 222 HNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPV 271 (544)
Q Consensus 222 ~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~ 271 (544)
....... .....|.+.+..+-+ ..|.+|+|.|+-.
T Consensus 362 ~q~~v~~---~~g~~~~~~l~~~LR------------~dPDvI~vGEiRd 396 (564)
T TIGR02538 362 NQVNVNP---KIGLTFAAALRSFLR------------QDPDIIMVGEIRD 396 (564)
T ss_pred eEEEecc---ccCCCHHHHHHHHhc------------cCCCEEEeCCCCC
Confidence 1110000 001234444444322 3588999999975
No 342
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.35 E-value=0.012 Score=61.79 Aligned_cols=34 Identities=26% Similarity=0.535 Sum_probs=26.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh----CCeEEEEeC
Q 009072 178 TNVLVITGQAGVGKTATVRQIASHL----GARLYEWDT 211 (544)
Q Consensus 178 ~~~lLL~GPpG~GKTtla~~lA~el----g~~viei~~ 211 (544)
+..++|.||+|+||||++..+|.++ |..+.-+..
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~ 260 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTT 260 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecc
Confidence 3679999999999999999999754 445544443
No 343
>PRK14531 adenylate kinase; Provisional
Probab=97.34 E-value=0.00021 Score=67.09 Aligned_cols=30 Identities=23% Similarity=0.423 Sum_probs=27.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCeEEE
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLGARLYE 208 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg~~vie 208 (544)
+.++++||||+||||+++.||+.+|+..+.
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is 32 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLS 32 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEe
Confidence 569999999999999999999999988654
No 344
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.33 E-value=0.00053 Score=60.56 Aligned_cols=51 Identities=27% Similarity=0.412 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCC
Q 009072 156 KKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPT 213 (544)
Q Consensus 156 ~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~ 213 (544)
+...++-..|...+ .+...++|.|+.|+||||+++.+++.+|.. -.++.|+
T Consensus 6 ~~t~~l~~~l~~~l------~~~~~i~l~G~lGaGKTtl~~~l~~~lg~~-~~v~SPT 56 (133)
T TIGR00150 6 KAMDKFGKAFAKPL------DFGTVVLLKGDLGAGKTTLVQGLLQGLGIQ-GNVTSPT 56 (133)
T ss_pred HHHHHHHHHHHHhC------CCCCEEEEEcCCCCCHHHHHHHHHHHcCCC-CcccCCC
Confidence 34445555554432 233689999999999999999999999865 2344444
No 345
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.32 E-value=0.0021 Score=61.45 Aligned_cols=22 Identities=36% Similarity=0.474 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHH
Q 009072 179 NVLVITGQAGVGKTATVRQIAS 200 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~ 200 (544)
+.++|+||.|+||||+++.++.
T Consensus 30 ~~~~l~G~n~~GKstll~~i~~ 51 (204)
T cd03282 30 RFHIITGPNMSGKSTYLKQIAL 51 (204)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999873
No 346
>PRK07261 topology modulation protein; Provisional
Probab=97.32 E-value=0.00023 Score=66.10 Aligned_cols=30 Identities=23% Similarity=0.498 Sum_probs=27.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 009072 180 VLVITGQAGVGKTATVRQIASHLGARLYEW 209 (544)
Q Consensus 180 ~lLL~GPpG~GKTtla~~lA~elg~~viei 209 (544)
.+++.|+||+||||+|+.|++.++++++..
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~ 31 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHL 31 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEec
Confidence 489999999999999999999999887754
No 347
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=97.32 E-value=0.0019 Score=61.56 Aligned_cols=22 Identities=36% Similarity=0.498 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHH
Q 009072 179 NVLVITGQAGVGKTATVRQIAS 200 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~ 200 (544)
..++|+||.|+||||+++.++.
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 5899999999999999999993
No 348
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.32 E-value=0.0002 Score=64.88 Aligned_cols=30 Identities=33% Similarity=0.516 Sum_probs=27.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 009072 180 VLVITGQAGVGKTATVRQIASHLGARLYEW 209 (544)
Q Consensus 180 ~lLL~GPpG~GKTtla~~lA~elg~~viei 209 (544)
.++|+||||+||||+++.+|+.+|+.++..
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~ 30 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDL 30 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEc
Confidence 378999999999999999999999988754
No 349
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.32 E-value=0.002 Score=65.67 Aligned_cols=39 Identities=18% Similarity=0.176 Sum_probs=30.8
Q ss_pred CCCCccEEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeCC
Q 009072 174 DKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTP 212 (544)
Q Consensus 174 g~~~~~~lLL~GPpG~GKTtla~~lA~el---g~~viei~~s 212 (544)
|-++.++..++||||+|||+++..++.+. |..++.+.+.
T Consensus 51 Glp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E 92 (325)
T cd00983 51 GYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAE 92 (325)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECcc
Confidence 66676899999999999999998877543 6666666553
No 350
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.31 E-value=0.0031 Score=56.71 Aligned_cols=24 Identities=29% Similarity=0.580 Sum_probs=22.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 009072 179 NVLVITGQAGVGKTATVRQIASHL 202 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~el 202 (544)
..+.|.||+|+||||++++++..+
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCC
Confidence 689999999999999999999875
No 351
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=97.31 E-value=0.0056 Score=57.91 Aligned_cols=33 Identities=36% Similarity=0.530 Sum_probs=26.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeC
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLGARLYEWDT 211 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg~~viei~~ 211 (544)
+.++|.||+|+|||.++-.+|+++|.+++..+.
T Consensus 2 ~v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Dr 34 (233)
T PF01745_consen 2 KVYLIVGPTGTGKTALAIALAQKTGAPVISLDR 34 (233)
T ss_dssp EEEEEE-STTSSHHHHHHHHHHHH--EEEEE-S
T ss_pred cEEEEECCCCCChhHHHHHHHHHhCCCEEEecc
Confidence 578999999999999999999999999987654
No 352
>PRK06762 hypothetical protein; Provisional
Probab=97.31 E-value=0.00027 Score=65.11 Aligned_cols=32 Identities=28% Similarity=0.522 Sum_probs=27.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEe
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLGARLYEWD 210 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg~~viei~ 210 (544)
..++|+|+||+||||+|+.+++.++..++.++
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~ 34 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERLGRGTLLVS 34 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCeEEec
Confidence 68999999999999999999999965554443
No 353
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.31 E-value=0.0033 Score=66.41 Aligned_cols=123 Identities=14% Similarity=0.257 Sum_probs=73.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCCchhhhhhhhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCC
Q 009072 180 VLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESK 259 (544)
Q Consensus 180 ~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~~~~~~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~ 259 (544)
+.+|+||-+|||||+++.+.+.+.-.++.++-.+..... . ...+.+..+... +. .
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~---------~---~l~d~~~~~~~~---~~----------~ 93 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDR---------I---ELLDLLRAYIEL---KE----------R 93 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcch---------h---hHHHHHHHHHHh---hc----------c
Confidence 899999999999999988888876556666654432111 0 001112222211 10 1
Q ss_pred CceEEEEecCCCCCchhHHHHHHHHHHHHHhcCCCcEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHH
Q 009072 260 SSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNG 339 (544)
Q Consensus 260 ~~~vIlIDEid~l~~~~~~~~~~~~L~~~~~~~~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~ 339 (544)
++..||+|||+...+ ....+..+.+.+.. -|+|++.+... ......+.+.. |...+.+-|.+..
T Consensus 94 ~~~yifLDEIq~v~~------W~~~lk~l~d~~~~-~v~itgsss~l--------l~~~~~~~L~G-R~~~~~l~PlSF~ 157 (398)
T COG1373 94 EKSYIFLDEIQNVPD------WERALKYLYDRGNL-DVLITGSSSSL--------LSKEISESLAG-RGKDLELYPLSFR 157 (398)
T ss_pred CCceEEEecccCchh------HHHHHHHHHccccc-eEEEECCchhh--------hccchhhhcCC-CceeEEECCCCHH
Confidence 356999999998643 34456666666654 45555543211 11112333333 4788999999998
Q ss_pred HHHH
Q 009072 340 SIKR 343 (544)
Q Consensus 340 ~i~~ 343 (544)
+...
T Consensus 158 Efl~ 161 (398)
T COG1373 158 EFLK 161 (398)
T ss_pred HHHh
Confidence 8865
No 354
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=97.31 E-value=0.00049 Score=70.25 Aligned_cols=56 Identities=23% Similarity=0.373 Sum_probs=41.0
Q ss_pred ChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 009072 154 QRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEW 209 (544)
Q Consensus 154 ~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei 209 (544)
.++..+.+...++..........+...++|+|+|||||||+++.+|+.+|++++..
T Consensus 109 ~~~~~~~~~~~l~~~~~~~~~~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~ 164 (309)
T PRK08154 109 SPAQLARVRDALSGMLGAGRRAARRRRIALIGLRGAGKSTLGRMLAARLGVPFVEL 164 (309)
T ss_pred CHHHHHHHHHHHHHHHhhhhhccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeH
Confidence 45555566666655443322223447899999999999999999999999998843
No 355
>PRK14532 adenylate kinase; Provisional
Probab=97.31 E-value=0.00024 Score=66.89 Aligned_cols=30 Identities=17% Similarity=0.298 Sum_probs=26.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 009072 180 VLVITGQAGVGKTATVRQIASHLGARLYEW 209 (544)
Q Consensus 180 ~lLL~GPpG~GKTtla~~lA~elg~~viei 209 (544)
.++|.||||+||||+++.||+.+|+..+..
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~is~ 31 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQLST 31 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEeC
Confidence 489999999999999999999999887643
No 356
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.30 E-value=0.0024 Score=64.24 Aligned_cols=36 Identities=33% Similarity=0.562 Sum_probs=28.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh----C-CeEEEEeCCC
Q 009072 178 TNVLVITGQAGVGKTATVRQIASHL----G-ARLYEWDTPT 213 (544)
Q Consensus 178 ~~~lLL~GPpG~GKTtla~~lA~el----g-~~viei~~s~ 213 (544)
++.++|.||+|+||||++..||..+ | ..+.-+..-.
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~ 234 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDT 234 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCc
Confidence 3689999999999999999998865 4 5666665543
No 357
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.30 E-value=0.00021 Score=66.87 Aligned_cols=30 Identities=23% Similarity=0.391 Sum_probs=26.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 009072 180 VLVITGQAGVGKTATVRQIASHLGARLYEW 209 (544)
Q Consensus 180 ~lLL~GPpG~GKTtla~~lA~elg~~viei 209 (544)
.+++.||||+||||+++.||+++|+..+..
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~~~~is~ 30 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFGFTHLSA 30 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCeEEEC
Confidence 378999999999999999999999766543
No 358
>PRK13949 shikimate kinase; Provisional
Probab=97.30 E-value=0.00022 Score=66.08 Aligned_cols=31 Identities=26% Similarity=0.463 Sum_probs=28.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLGARLYEW 209 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg~~viei 209 (544)
+.++|.||||+||||+++.+|+.++++++..
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~ 32 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGLSFIDL 32 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCeecc
Confidence 4699999999999999999999999987754
No 359
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.30 E-value=0.0018 Score=60.49 Aligned_cols=24 Identities=42% Similarity=0.681 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 009072 179 NVLVITGQAGVGKTATVRQIASHL 202 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~el 202 (544)
..+.|.||.|+||||++++++..+
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCC
Confidence 689999999999999999999865
No 360
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=97.30 E-value=0.01 Score=61.03 Aligned_cols=45 Identities=20% Similarity=0.375 Sum_probs=32.3
Q ss_pred HHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhC--CeEEEEe
Q 009072 160 EVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLG--ARLYEWD 210 (544)
Q Consensus 160 ~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg--~~viei~ 210 (544)
.+..+|..... ..+.++++||+|+||||++++++.++. ..++.+.
T Consensus 148 ~~~~~L~~~v~------~~~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiE 194 (332)
T PRK13900 148 KIKEFLEHAVI------SKKNIIISGGTSTGKTTFTNAALREIPAIERLITVE 194 (332)
T ss_pred HHHHHHHHHHH------cCCcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEec
Confidence 34555555443 126899999999999999999999875 3454443
No 361
>PF06144 DNA_pol3_delta: DNA polymerase III, delta subunit; InterPro: IPR010372 DNA polymerase III, delta subunit (2.7.7.7 from EC) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalysed reaction []. The delta subunit is also known as HolA.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication, 0009360 DNA polymerase III complex; PDB: 3GLG_F 1XXH_A 1JQL_B 3GLF_F 1JQJ_C 3GLI_F.
Probab=97.28 E-value=0.002 Score=59.55 Aligned_cols=114 Identities=12% Similarity=0.213 Sum_probs=66.5
Q ss_pred CceEEEEecCCCCCchhHHHHHHHHHHHHHhcCCCcE-EEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCH
Q 009072 260 SSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPT-AVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITN 338 (544)
Q Consensus 260 ~~~vIlIDEid~l~~~~~~~~~~~~L~~~~~~~~~pi-IiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~ 338 (544)
.+++|+|.+++.+... ........|..++....... +++++. .. .+ ....+-..+.. .+.++.|.++..
T Consensus 57 ~~klvii~~~~~l~~~-~~~~~~~~l~~~l~~~~~~~~lii~~~-~~---~~----~~~k~~k~l~~-~~~~~~~~~~~~ 126 (172)
T PF06144_consen 57 DKKLVIIKNAPFLKDK-LKKKEIKALIEYLSNPPPDCILIIFSE-EK---LD----KRKKLYKALKK-QAIVIECKKPKE 126 (172)
T ss_dssp SEEEEEEE-----TT--S-TTHHHHHHHHTTT--SSEEEEEEES--S---------HHHHHHHHHTT-TEEEEEE----T
T ss_pred CCeEEEEecCcccccc-ccHHHHHHHHHHHhCCCCCEEEEEEeC-Cc---hh----hhhhHHHHHhc-ccceEEecCCCH
Confidence 4679999998443110 01122344666666543333 333332 11 01 11123333443 478899999999
Q ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHhc
Q 009072 339 GSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIRQAITSLQFSS 383 (544)
Q Consensus 339 ~~i~~~L~~i~~~e~~~i~~~~l~~Ia~~s~GDiR~aIn~Lq~~~ 383 (544)
.++..+++..+.+.|+.+++++++.|++..++|++.+.+.|+-++
T Consensus 127 ~~~~~~i~~~~~~~g~~i~~~a~~~L~~~~~~d~~~l~~EleKL~ 171 (172)
T PF06144_consen 127 QELPRWIKERAKKNGLKIDPDAAQYLIERVGNDLSLLQNELEKLS 171 (172)
T ss_dssp TTHHHHHHHHHHHTT-EE-HHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHhChHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999998765
No 362
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.28 E-value=0.0025 Score=58.08 Aligned_cols=25 Identities=32% Similarity=0.602 Sum_probs=22.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhC
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLG 203 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg 203 (544)
..+.|.||+|+||||++++++..+.
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~~ 50 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLK 50 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 6899999999999999999998763
No 363
>PRK14530 adenylate kinase; Provisional
Probab=97.27 E-value=0.00028 Score=68.05 Aligned_cols=31 Identities=19% Similarity=0.364 Sum_probs=27.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLGARLYEW 209 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg~~viei 209 (544)
+.++|.||||+||||+++.||+.+|+..+..
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~~~~~i~~ 34 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEFGVEHVTT 34 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 5699999999999999999999999887643
No 364
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.27 E-value=0.00023 Score=66.30 Aligned_cols=30 Identities=20% Similarity=0.471 Sum_probs=26.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCeEEE
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLGARLYE 208 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg~~vie 208 (544)
++++|+||||+||||+++.|+++++..++.
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~ 32 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLH 32 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCccc
Confidence 689999999999999999999998766543
No 365
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.27 E-value=0.0041 Score=60.25 Aligned_cols=22 Identities=36% Similarity=0.460 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHH
Q 009072 179 NVLVITGQAGVGKTATVRQIAS 200 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~ 200 (544)
+.++|+||.|+||||+.+.++.
T Consensus 32 ~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 32 YCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999987
No 366
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=97.27 E-value=0.00024 Score=63.63 Aligned_cols=31 Identities=29% Similarity=0.551 Sum_probs=27.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCeEEEEe
Q 009072 180 VLVITGQAGVGKTATVRQIASHLGARLYEWD 210 (544)
Q Consensus 180 ~lLL~GPpG~GKTtla~~lA~elg~~viei~ 210 (544)
+++++||||+||||+++.||+.+|++++...
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 3789999999999999999999999887543
No 367
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.26 E-value=0.00029 Score=66.08 Aligned_cols=30 Identities=23% Similarity=0.454 Sum_probs=27.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCeEEE
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLGARLYE 208 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg~~vie 208 (544)
+.+++.||||+||||+++.+++++|+..+.
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~ 33 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVEKYGFTHLS 33 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCcEEe
Confidence 589999999999999999999999877654
No 368
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.25 E-value=0.00026 Score=63.94 Aligned_cols=29 Identities=31% Similarity=0.653 Sum_probs=25.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCeEEE
Q 009072 180 VLVITGQAGVGKTATVRQIASHLGARLYE 208 (544)
Q Consensus 180 ~lLL~GPpG~GKTtla~~lA~elg~~vie 208 (544)
.++|+||||+||||+++.+++.++..++.
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~~~~~i~ 29 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERLGAPFID 29 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhcCCEEEe
Confidence 37899999999999999999999887654
No 369
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.25 E-value=0.011 Score=55.55 Aligned_cols=25 Identities=20% Similarity=0.453 Sum_probs=23.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 009072 178 TNVLVITGQAGVGKTATVRQIASHL 202 (544)
Q Consensus 178 ~~~lLL~GPpG~GKTtla~~lA~el 202 (544)
++.++|+||+|+||||+++.|.++.
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhcC
Confidence 3789999999999999999999875
No 370
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.25 E-value=0.0039 Score=60.39 Aligned_cols=40 Identities=28% Similarity=0.289 Sum_probs=31.2
Q ss_pred CCCCccEEEEEcCCCCcHHHHHHHHHHHh---C------CeEEEEeCCC
Q 009072 174 DKFSTNVLVITGQAGVGKTATVRQIASHL---G------ARLYEWDTPT 213 (544)
Q Consensus 174 g~~~~~~lLL~GPpG~GKTtla~~lA~el---g------~~viei~~s~ 213 (544)
|-++...+.|+||||+|||+++..+|... + ..++.+....
T Consensus 15 G~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~ 63 (226)
T cd01393 15 GIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEG 63 (226)
T ss_pred CCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCC
Confidence 66666899999999999999999988763 3 5666666543
No 371
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.25 E-value=0.027 Score=57.63 Aligned_cols=34 Identities=29% Similarity=0.495 Sum_probs=27.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeC
Q 009072 178 TNVLVITGQAGVGKTATVRQIASHL---GARLYEWDT 211 (544)
Q Consensus 178 ~~~lLL~GPpG~GKTtla~~lA~el---g~~viei~~ 211 (544)
+..++|.||+|+||||++..+|..+ |..+.-+.+
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~ 150 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAG 150 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEec
Confidence 4789999999999999999999876 566655544
No 372
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=97.24 E-value=0.0018 Score=61.65 Aligned_cols=22 Identities=45% Similarity=0.629 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHH
Q 009072 179 NVLVITGQAGVGKTATVRQIAS 200 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~ 200 (544)
+.++|+||.|+||||+.+.++.
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~~ 50 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLGL 50 (200)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 5799999999999999999983
No 373
>PRK06696 uridine kinase; Validated
Probab=97.24 E-value=0.00074 Score=65.55 Aligned_cols=52 Identities=15% Similarity=0.196 Sum_probs=38.8
Q ss_pred ChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEe
Q 009072 154 QRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWD 210 (544)
Q Consensus 154 ~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~el---g~~viei~ 210 (544)
+++.+++|..++..... + .+..+.+.|++|+||||+|+.|++.+ |..++.+.
T Consensus 3 ~~~~~~~la~~~~~~~~---~--~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~ 57 (223)
T PRK06696 3 RKQLIKELAEHILTLNL---T--RPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRAS 57 (223)
T ss_pred HHHHHHHHHHHHHHhCC---C--CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEec
Confidence 45667777777754211 2 22799999999999999999999998 66666544
No 374
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.24 E-value=0.0012 Score=68.39 Aligned_cols=25 Identities=24% Similarity=0.316 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhC
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLG 203 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg 203 (544)
...+|.||||+||||+++.+++...
T Consensus 170 QR~lIvgppGvGKTTLaK~Ian~I~ 194 (416)
T PRK09376 170 QRGLIVAPPKAGKTVLLQNIANSIT 194 (416)
T ss_pred ceEEEeCCCCCChhHHHHHHHHHHH
Confidence 5688889999999999999998774
No 375
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.24 E-value=0.002 Score=63.71 Aligned_cols=35 Identities=20% Similarity=0.519 Sum_probs=28.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhC----CeEEEEeCCC
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLG----ARLYEWDTPT 213 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg----~~viei~~s~ 213 (544)
..+|++||+|+||||++-++-..++ ..++.+..|.
T Consensus 126 GLILVTGpTGSGKSTTlAamId~iN~~~~~HIlTIEDPI 164 (353)
T COG2805 126 GLILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIEDPI 164 (353)
T ss_pred ceEEEeCCCCCcHHHHHHHHHHHHhccCCcceEEecCch
Confidence 6899999999999999998888764 4566666554
No 376
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=97.22 E-value=0.00043 Score=76.86 Aligned_cols=49 Identities=22% Similarity=0.398 Sum_probs=41.2
Q ss_pred CCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhCC
Q 009072 146 RSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGA 204 (544)
Q Consensus 146 ~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg~ 204 (544)
.-+++++|+++.++.++..+.. + ++++|+||||||||++++++|+.++.
T Consensus 15 ~~~~~viG~~~a~~~l~~a~~~------~----~~~ll~G~pG~GKT~la~~la~~l~~ 63 (608)
T TIGR00764 15 RLIDQVIGQEEAVEIIKKAAKQ------K----RNVLLIGEPGVGKSMLAKAMAELLPD 63 (608)
T ss_pred hhHhhccCHHHHHHHHHHHHHc------C----CCEEEECCCCCCHHHHHHHHHHHcCc
Confidence 4567899999988888777654 1 47889999999999999999999864
No 377
>PRK06217 hypothetical protein; Validated
Probab=97.22 E-value=0.00034 Score=65.70 Aligned_cols=31 Identities=29% Similarity=0.358 Sum_probs=28.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCeEEEEe
Q 009072 180 VLVITGQAGVGKTATVRQIASHLGARLYEWD 210 (544)
Q Consensus 180 ~lLL~GPpG~GKTtla~~lA~elg~~viei~ 210 (544)
.++|.|+||+||||+++.|++.+|++++..+
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 5999999999999999999999999877643
No 378
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=97.21 E-value=0.0046 Score=57.21 Aligned_cols=33 Identities=27% Similarity=0.419 Sum_probs=28.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCC
Q 009072 181 LVITGQAGVGKTATVRQIASHLGARLYEWDTPT 213 (544)
Q Consensus 181 lLL~GPpG~GKTtla~~lA~elg~~viei~~s~ 213 (544)
+|++||||+|||++|..++...+.+++.+....
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~ 34 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAE 34 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccC
Confidence 689999999999999999998777777775543
No 379
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.21 E-value=0.0038 Score=60.98 Aligned_cols=40 Identities=23% Similarity=0.361 Sum_probs=31.9
Q ss_pred CCCCccEEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeCCC
Q 009072 174 DKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTPT 213 (544)
Q Consensus 174 g~~~~~~lLL~GPpG~GKTtla~~lA~el---g~~viei~~s~ 213 (544)
|-++...++++||||+|||+++..++.+. |..++.+....
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~ 63 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTEN 63 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCC
Confidence 66777899999999999999999997653 66776666543
No 380
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.20 E-value=0.00088 Score=63.71 Aligned_cols=24 Identities=33% Similarity=0.531 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 009072 179 NVLVITGQAGVGKTATVRQIASHL 202 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~el 202 (544)
+.+++.||+|||||.+|-+.|-++
T Consensus 20 ~~v~~~G~AGTGKT~LA~a~Al~~ 43 (205)
T PF02562_consen 20 DLVIVNGPAGTGKTFLALAAALEL 43 (205)
T ss_dssp SEEEEE--TTSSTTHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Confidence 689999999999999999998765
No 381
>PLN02748 tRNA dimethylallyltransferase
Probab=97.20 E-value=0.0043 Score=66.29 Aligned_cols=31 Identities=29% Similarity=0.504 Sum_probs=27.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLGARLYEW 209 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg~~viei 209 (544)
+.++|.||+|+|||+++..||+.++..++..
T Consensus 23 ~~i~i~GptgsGKs~la~~la~~~~~eii~~ 53 (468)
T PLN02748 23 KVVVVMGPTGSGKSKLAVDLASHFPVEIINA 53 (468)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCeeEEcC
Confidence 6899999999999999999999999776643
No 382
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.20 E-value=0.0043 Score=57.05 Aligned_cols=25 Identities=20% Similarity=0.441 Sum_probs=22.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 009072 178 TNVLVITGQAGVGKTATVRQIASHL 202 (544)
Q Consensus 178 ~~~lLL~GPpG~GKTtla~~lA~el 202 (544)
...+.|.||+|+||||++++++...
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3689999999999999999999875
No 383
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.20 E-value=0.0057 Score=57.02 Aligned_cols=24 Identities=29% Similarity=0.422 Sum_probs=21.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 009072 178 TNVLVITGQAGVGKTATVRQIASH 201 (544)
Q Consensus 178 ~~~lLL~GPpG~GKTtla~~lA~e 201 (544)
...+.|.||.|+||||+.++++..
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~~ 44 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLYA 44 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhc
Confidence 368999999999999999999643
No 384
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=97.19 E-value=0.00031 Score=64.48 Aligned_cols=27 Identities=37% Similarity=0.671 Sum_probs=24.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCeEE
Q 009072 181 LVITGQAGVGKTATVRQIASHLGARLY 207 (544)
Q Consensus 181 lLL~GPpG~GKTtla~~lA~elg~~vi 207 (544)
++|.||||+||||+++.+++.++..++
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v 27 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFI 27 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEE
Confidence 478999999999999999999987665
No 385
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=97.19 E-value=0.00029 Score=73.77 Aligned_cols=48 Identities=17% Similarity=0.270 Sum_probs=39.0
Q ss_pred CCCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 009072 145 PRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL 202 (544)
Q Consensus 145 P~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~el 202 (544)
..+|.|+.|++..++.+.-...- .++|||+||||||||++|+.+..-|
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAAAG----------gHnLl~~GpPGtGKTmla~Rl~~lL 222 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAAAG----------GHNLLLVGPPGTGKTMLASRLPGLL 222 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHHhc----------CCcEEEecCCCCchHHhhhhhcccC
Confidence 34899999999988887654322 2789999999999999999887654
No 386
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.19 E-value=0.0034 Score=59.26 Aligned_cols=26 Identities=23% Similarity=0.419 Sum_probs=22.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 009072 177 STNVLVITGQAGVGKTATVRQIASHL 202 (544)
Q Consensus 177 ~~~~lLL~GPpG~GKTtla~~lA~el 202 (544)
.+.+.-|.||+||||||+.|++-+..
T Consensus 32 ~~~VTAlIGPSGcGKST~LR~lNRmn 57 (253)
T COG1117 32 KNKVTALIGPSGCGKSTLLRCLNRMN 57 (253)
T ss_pred CCceEEEECCCCcCHHHHHHHHHhhc
Confidence 34788899999999999999997764
No 387
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.18 E-value=0.0027 Score=68.14 Aligned_cols=112 Identities=16% Similarity=0.236 Sum_probs=62.1
Q ss_pred CCCCccEEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeCCCch-hhhhhhhccccCccc----ccchHHHHHHHHHHH
Q 009072 174 DKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTPTPT-IWQEYMHNCKTGLEY----TSKLDEFENFVERIR 245 (544)
Q Consensus 174 g~~~~~~lLL~GPpG~GKTtla~~lA~el---g~~viei~~s~~~-~~~e~l~~~~~g~~~----~s~~~~~~~~l~~~~ 245 (544)
|-++...++|+|+||+||||++..+|..+ +.+++.+...+.. ........ .+... .-....+..+...+.
T Consensus 90 Gi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~r--lg~~~~~l~~~~e~~~~~I~~~i~ 167 (454)
T TIGR00416 90 GIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIR--LGLPEPNLYVLSETNWEQICANIE 167 (454)
T ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHH--cCCChHHeEEcCCCCHHHHHHHHH
Confidence 66677899999999999999999987765 4566666654322 11111111 01100 000112333444333
Q ss_pred hhcCCCCCCCCCCCCceEEEEecCCCCCch---------hHHHHHHHHHHHHHhcCCCcEEEE
Q 009072 246 RYGSTSPSIPGESKSSAILLIDDLPVTNGR---------TAFERLRQCLLLLVRSTHIPTAVV 299 (544)
Q Consensus 246 ~~~~l~~~~~~~~~~~~vIlIDEid~l~~~---------~~~~~~~~~L~~~~~~~~~piIiI 299 (544)
. .++.+++||.+..+... ...+.+...|..+.+....+++++
T Consensus 168 ~------------~~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak~~giTvllt 218 (454)
T TIGR00416 168 E------------ENPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAKTRGIAIFIV 218 (454)
T ss_pred h------------cCCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHHHHHHhCCEEEEE
Confidence 2 24679999999865321 123344445666666665655555
No 388
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.17 E-value=0.0016 Score=64.32 Aligned_cols=31 Identities=29% Similarity=0.529 Sum_probs=26.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeC
Q 009072 181 LVITGQAGVGKTATVRQIASHL---GARLYEWDT 211 (544)
Q Consensus 181 lLL~GPpG~GKTtla~~lA~el---g~~viei~~ 211 (544)
++|+|+||+||||+|+.+++.+ ++.++.++.
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~ 35 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGT 35 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEcc
Confidence 7999999999999999999987 566666543
No 389
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=97.16 E-value=0.0016 Score=67.75 Aligned_cols=35 Identities=26% Similarity=0.558 Sum_probs=28.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhC-----CeEEEEeCCC
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLG-----ARLYEWDTPT 213 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg-----~~viei~~s~ 213 (544)
..+|++||+|+||||+++++++++. ..++.+..|.
T Consensus 150 GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~ 189 (372)
T TIGR02525 150 GLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPI 189 (372)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCc
Confidence 5789999999999999999998872 4577776554
No 390
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.15 E-value=0.00039 Score=65.61 Aligned_cols=29 Identities=21% Similarity=0.394 Sum_probs=26.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 009072 181 LVITGQAGVGKTATVRQIASHLGARLYEW 209 (544)
Q Consensus 181 lLL~GPpG~GKTtla~~lA~elg~~viei 209 (544)
++|.||||+||||+++.||+++|+.++..
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~~ 30 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHIST 30 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEEC
Confidence 79999999999999999999999887653
No 391
>PRK06547 hypothetical protein; Provisional
Probab=97.15 E-value=0.00042 Score=64.41 Aligned_cols=31 Identities=29% Similarity=0.475 Sum_probs=28.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLGARLYEW 209 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg~~viei 209 (544)
..++++||+|+||||+++.|++.++..++..
T Consensus 16 ~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~ 46 (172)
T PRK06547 16 ITVLIDGRSGSGKTTLAGALAARTGFQLVHL 46 (172)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCCCeecc
Confidence 7899999999999999999999999887754
No 392
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=97.15 E-value=0.0049 Score=61.51 Aligned_cols=40 Identities=28% Similarity=0.390 Sum_probs=30.9
Q ss_pred CCCCccEEEEEcCCCCcHHHHHHHHHHHh----CCeEEEEeCCC
Q 009072 174 DKFSTNVLVITGQAGVGKTATVRQIASHL----GARLYEWDTPT 213 (544)
Q Consensus 174 g~~~~~~lLL~GPpG~GKTtla~~lA~el----g~~viei~~s~ 213 (544)
|..+...++|.||||+|||+++..+|..+ |..++.+....
T Consensus 26 G~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~ 69 (271)
T cd01122 26 GLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEE 69 (271)
T ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEccc
Confidence 44555789999999999999998887663 77777666543
No 393
>PF13245 AAA_19: Part of AAA domain
Probab=97.15 E-value=0.00044 Score=55.00 Aligned_cols=24 Identities=42% Similarity=0.664 Sum_probs=18.1
Q ss_pred cEEEEEcCCCCcHHHH-HHHHHHHh
Q 009072 179 NVLVITGQAGVGKTAT-VRQIASHL 202 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtl-a~~lA~el 202 (544)
+.+++.||||+|||++ ++.++..+
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 5788899999999954 55555554
No 394
>PRK14528 adenylate kinase; Provisional
Probab=97.15 E-value=0.00043 Score=65.25 Aligned_cols=31 Identities=16% Similarity=0.321 Sum_probs=27.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLGARLYEW 209 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg~~viei 209 (544)
+.+++.||||+||||+++.+|+.+|+..+..
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is~ 32 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLSIPQIST 32 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeeeC
Confidence 4689999999999999999999999887653
No 395
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.15 E-value=0.0021 Score=66.88 Aligned_cols=25 Identities=24% Similarity=0.310 Sum_probs=23.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhC
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLG 203 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg 203 (544)
..++|.||||+||||+++.+++.+.
T Consensus 169 q~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 169 QRGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred CEEEEECCCCCChhHHHHHHHHhhc
Confidence 6799999999999999999999864
No 396
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.14 E-value=0.0037 Score=60.90 Aligned_cols=40 Identities=25% Similarity=0.249 Sum_probs=30.7
Q ss_pred CCCCccEEEEEcCCCCcHHHHHHHHHHHh---------CCeEEEEeCCC
Q 009072 174 DKFSTNVLVITGQAGVGKTATVRQIASHL---------GARLYEWDTPT 213 (544)
Q Consensus 174 g~~~~~~lLL~GPpG~GKTtla~~lA~el---------g~~viei~~s~ 213 (544)
|-++...+.|+||||+|||+++..+|... +..++.+....
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~ 63 (235)
T cd01123 15 GIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG 63 (235)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC
Confidence 56666899999999999999999998553 24666666544
No 397
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.14 E-value=0.043 Score=54.91 Aligned_cols=34 Identities=35% Similarity=0.567 Sum_probs=27.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeC
Q 009072 178 TNVLVITGQAGVGKTATVRQIASHL---GARLYEWDT 211 (544)
Q Consensus 178 ~~~lLL~GPpG~GKTtla~~lA~el---g~~viei~~ 211 (544)
++.++|+||+|+||||++..+|..+ |..+.-+.+
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~ 108 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAG 108 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 3789999999999999999998776 666655543
No 398
>PRK09354 recA recombinase A; Provisional
Probab=97.12 E-value=0.0038 Score=64.17 Aligned_cols=40 Identities=18% Similarity=0.134 Sum_probs=30.8
Q ss_pred CCCCccEEEEEcCCCCcHHHHHHHHHHH---hCCeEEEEeCCC
Q 009072 174 DKFSTNVLVITGQAGVGKTATVRQIASH---LGARLYEWDTPT 213 (544)
Q Consensus 174 g~~~~~~lLL~GPpG~GKTtla~~lA~e---lg~~viei~~s~ 213 (544)
|-++.++.+++||||+|||+++..++.+ .|..++.+....
T Consensus 56 Gip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~ 98 (349)
T PRK09354 56 GLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEH 98 (349)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCcc
Confidence 6677789999999999999999877654 366666665543
No 399
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=97.12 E-value=0.0061 Score=56.21 Aligned_cols=25 Identities=36% Similarity=0.590 Sum_probs=23.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 009072 178 TNVLVITGQAGVGKTATVRQIASHL 202 (544)
Q Consensus 178 ~~~lLL~GPpG~GKTtla~~lA~el 202 (544)
...+.|.||+|+||||++++++..+
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3689999999999999999999876
No 400
>PRK04040 adenylate kinase; Provisional
Probab=97.12 E-value=0.00052 Score=64.76 Aligned_cols=30 Identities=33% Similarity=0.588 Sum_probs=26.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh--CCeEEE
Q 009072 179 NVLVITGQAGVGKTATVRQIASHL--GARLYE 208 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~el--g~~vie 208 (544)
+.++++|+|||||||+++.+++++ ++.++.
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~ 34 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLKEDYKIVN 34 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhccCCeEEe
Confidence 689999999999999999999999 666643
No 401
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.11 E-value=0.0092 Score=58.45 Aligned_cols=39 Identities=21% Similarity=0.233 Sum_probs=29.4
Q ss_pred CCCCccEEEEEcCCCCcHHHHHHHHHHH---hCCeEEEEeCC
Q 009072 174 DKFSTNVLVITGQAGVGKTATVRQIASH---LGARLYEWDTP 212 (544)
Q Consensus 174 g~~~~~~lLL~GPpG~GKTtla~~lA~e---lg~~viei~~s 212 (544)
|-++...+|++||||+|||+++..++.+ -|-.++.+...
T Consensus 17 G~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~e 58 (237)
T TIGR03877 17 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALE 58 (237)
T ss_pred CCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEee
Confidence 6677789999999999999999776654 25566555443
No 402
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.10 E-value=0.014 Score=59.82 Aligned_cols=92 Identities=16% Similarity=0.188 Sum_probs=50.3
Q ss_pred CCCceEEEEecCCCCCchhHHHHHHHHHHHHHhcCCCcEEEEEccCCCCC--CCCcccc--chHHHHHHHhhcCceeEEe
Q 009072 258 SKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPTAVVLTECGKAD--SVDSTAQ--SFEELQSILVDAGARKVAL 333 (544)
Q Consensus 258 ~~~~~vIlIDEid~l~~~~~~~~~~~~L~~~~~~~~~piIiI~t~~~~~~--~~d~~~~--~l~~l~~ll~r~~~~~I~f 333 (544)
..++.||+|||+|++.... ...+.+.+..+.+..+. +++++.|..... ....+.. .-..-...++..--..+.+
T Consensus 170 ~~~~iViiIDdLDR~~~~~-i~~~l~~ik~~~~~~~i-~~Il~~D~~~l~~ai~~~~~~~~~~~~~~~yLeKiiq~~~~l 247 (325)
T PF07693_consen 170 SKKRIVIIIDDLDRCSPEE-IVELLEAIKLLLDFPNI-IFILAFDPEILEKAIEKNYGEGFDEIDGREYLEKIIQVPFSL 247 (325)
T ss_pred CCceEEEEEcchhcCCcHH-HHHHHHHHHHhcCCCCe-EEEEEecHHHHHHHHHhhcCcccccccHHHHHHhhcCeEEEe
Confidence 3578999999999997754 34455666666665322 333344321000 0000000 0011133444432345888
Q ss_pred cCCCHHHHHHHHHHHHHH
Q 009072 334 NPITNGSIKRTLSKICRQ 351 (544)
Q Consensus 334 ~p~s~~~i~~~L~~i~~~ 351 (544)
++++..++...+...+..
T Consensus 248 P~~~~~~~~~~~~~~~~~ 265 (325)
T PF07693_consen 248 PPPSPSDLERYLNELLES 265 (325)
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 899999999888887543
No 403
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.10 E-value=0.00042 Score=63.56 Aligned_cols=31 Identities=26% Similarity=0.365 Sum_probs=28.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLGARLYEW 209 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg~~viei 209 (544)
+.++|.|++|+||||..+.||+.|+++++-.
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~ 33 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDT 33 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccc
Confidence 5799999999999999999999999998754
No 404
>PRK13946 shikimate kinase; Provisional
Probab=97.10 E-value=0.00051 Score=64.58 Aligned_cols=31 Identities=29% Similarity=0.529 Sum_probs=28.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLGARLYEW 209 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg~~viei 209 (544)
+.++|.|++||||||+++.||+.+|++++..
T Consensus 11 ~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~ 41 (184)
T PRK13946 11 RTVVLVGLMGAGKSTVGRRLATMLGLPFLDA 41 (184)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCeECc
Confidence 6899999999999999999999999998754
No 405
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=97.09 E-value=0.0015 Score=66.57 Aligned_cols=51 Identities=18% Similarity=0.314 Sum_probs=33.9
Q ss_pred CCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 009072 146 RSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL 202 (544)
Q Consensus 146 ~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~el 202 (544)
.++++++...-.-.+...+|...... +..+|++||+|+||||++++++.++
T Consensus 118 ~tl~~lv~~g~~~~~~~~~L~~~v~~------~~nilI~G~tGSGKTTll~aL~~~i 168 (323)
T PRK13833 118 IPLDDYVTSKIMTEAQASVIRSAIDS------RLNIVISGGTGSGKTTLANAVIAEI 168 (323)
T ss_pred CCHHHHHHcCCCCHHHHHHHHHHHHc------CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 35566653322223344455554431 1579999999999999999999886
No 406
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.09 E-value=0.00048 Score=67.04 Aligned_cols=32 Identities=19% Similarity=0.268 Sum_probs=28.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEe
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLGARLYEWD 210 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg~~viei~ 210 (544)
-.++|.||||+||||.++.||+.+|+..+...
T Consensus 7 mrIvl~G~PGsGK~T~a~~La~~~g~~~is~g 38 (229)
T PTZ00088 7 LKIVLFGAPGVGKGTFAEILSKKENLKHINMG 38 (229)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEECC
Confidence 34999999999999999999999998877643
No 407
>PRK02496 adk adenylate kinase; Provisional
Probab=97.09 E-value=0.00049 Score=64.56 Aligned_cols=30 Identities=27% Similarity=0.340 Sum_probs=26.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 009072 180 VLVITGQAGVGKTATVRQIASHLGARLYEW 209 (544)
Q Consensus 180 ~lLL~GPpG~GKTtla~~lA~elg~~viei 209 (544)
.++|.||||+||||+++.||+.+|+..+..
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~~i~~ 32 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIPHIST 32 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEh
Confidence 489999999999999999999999876643
No 408
>PLN02200 adenylate kinase family protein
Probab=97.09 E-value=0.00064 Score=66.43 Aligned_cols=29 Identities=21% Similarity=0.397 Sum_probs=26.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCeEE
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLGARLY 207 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg~~vi 207 (544)
..+++.||||+||||+++.+|+++|+..+
T Consensus 44 ~ii~I~G~PGSGKsT~a~~La~~~g~~hi 72 (234)
T PLN02200 44 FITFVLGGPGSGKGTQCEKIVETFGFKHL 72 (234)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 68999999999999999999999997654
No 409
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=97.08 E-value=0.0027 Score=60.47 Aligned_cols=23 Identities=43% Similarity=0.553 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 009072 180 VLVITGQAGVGKTATVRQIASHL 202 (544)
Q Consensus 180 ~lLL~GPpG~GKTtla~~lA~el 202 (544)
+.|+.|||||||||+.+-+|+-+
T Consensus 139 ntLiigpP~~GKTTlLRdiaR~~ 161 (308)
T COG3854 139 NTLIIGPPQVGKTTLLRDIARLL 161 (308)
T ss_pred eeEEecCCCCChHHHHHHHHHHh
Confidence 58999999999999999999876
No 410
>PRK13764 ATPase; Provisional
Probab=97.08 E-value=0.0022 Score=70.43 Aligned_cols=55 Identities=22% Similarity=0.332 Sum_probs=36.5
Q ss_pred CCCCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhC---CeEEEEeC
Q 009072 144 KPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLG---ARLYEWDT 211 (544)
Q Consensus 144 ~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg---~~viei~~ 211 (544)
.+.+++++...+... ..+.. ..+.+|++||||+||||++++++.++. ..+..+..
T Consensus 236 ~~~~Le~l~l~~~l~----~~l~~---------~~~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiED 293 (602)
T PRK13764 236 VKLSLEDYNLSEKLK----ERLEE---------RAEGILIAGAPGAGKSTFAQALAEFYADMGKIVKTMES 293 (602)
T ss_pred CCCCHHHhCCCHHHH----HHHHh---------cCCEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEECC
Confidence 345677777554332 22222 126799999999999999999998874 33435543
No 411
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=97.08 E-value=0.00059 Score=63.15 Aligned_cols=31 Identities=32% Similarity=0.471 Sum_probs=28.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLGARLYEW 209 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg~~viei 209 (544)
+.++|+|++|+||||+++.||+.+|++++..
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~ 33 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDT 33 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEc
Confidence 4688999999999999999999999998754
No 412
>PRK13948 shikimate kinase; Provisional
Probab=97.07 E-value=0.00067 Score=63.57 Aligned_cols=33 Identities=18% Similarity=0.285 Sum_probs=29.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEe
Q 009072 178 TNVLVITGQAGVGKTATVRQIASHLGARLYEWD 210 (544)
Q Consensus 178 ~~~lLL~GPpG~GKTtla~~lA~elg~~viei~ 210 (544)
+..++|.|++|+||||+++.+|+.+|++++..+
T Consensus 10 ~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D 42 (182)
T PRK13948 10 VTWVALAGFMGTGKSRIGWELSRALMLHFIDTD 42 (182)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC
Confidence 378999999999999999999999999988543
No 413
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=97.07 E-value=0.0021 Score=65.72 Aligned_cols=52 Identities=17% Similarity=0.243 Sum_probs=34.9
Q ss_pred CCCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 009072 145 PRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL 202 (544)
Q Consensus 145 P~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~el 202 (544)
+.++++|+...-.-.+...+|..... .++.++++||+|+||||++++++.++
T Consensus 121 ~~tl~~l~~~g~~~~~~~~~L~~~v~------~~~~ilI~G~tGSGKTTll~aL~~~~ 172 (319)
T PRK13894 121 IFTLDQYVERGIMTAAQREAIIAAVR------AHRNILVIGGTGSGKTTLVNAIINEM 172 (319)
T ss_pred CCCHHHHHhcCCCCHHHHHHHHHHHH------cCCeEEEECCCCCCHHHHHHHHHHhh
Confidence 45677775332222334455555433 12689999999999999999999874
No 414
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=97.07 E-value=0.015 Score=57.02 Aligned_cols=36 Identities=19% Similarity=0.324 Sum_probs=28.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh---------------CCeEEEEeCCCch
Q 009072 180 VLVITGQAGVGKTATVRQIASHL---------------GARLYEWDTPTPT 215 (544)
Q Consensus 180 ~lLL~GPpG~GKTtla~~lA~el---------------g~~viei~~s~~~ 215 (544)
.-+|.||||+|||+++..+|-.. +..++.+...++.
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~ 53 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPR 53 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCH
Confidence 46899999999999999998752 3457777776654
No 415
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=97.04 E-value=0.0049 Score=70.12 Aligned_cols=23 Identities=13% Similarity=0.219 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 009072 180 VLVITGQAGVGKTATVRQIASHL 202 (544)
Q Consensus 180 ~lLL~GPpG~GKTtla~~lA~el 202 (544)
++||.|+||||||++|+.+++..
T Consensus 494 hVLLvGDPGTGKSqLAr~Ih~ls 516 (915)
T PTZ00111 494 NVLLCGDPGTAKSQLLHYTHLLS 516 (915)
T ss_pred eEEEeCCCCccHHHHHHHHHHhC
Confidence 89999999999999999999854
No 416
>PRK14527 adenylate kinase; Provisional
Probab=97.04 E-value=0.00049 Score=65.03 Aligned_cols=30 Identities=27% Similarity=0.551 Sum_probs=27.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCeEEE
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLGARLYE 208 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg~~vie 208 (544)
..+++.||||+||||+++.+|+.+|+..+.
T Consensus 7 ~~i~i~G~pGsGKsT~a~~La~~~~~~~is 36 (191)
T PRK14527 7 KVVIFLGPPGAGKGTQAERLAQELGLKKLS 36 (191)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCCCC
Confidence 789999999999999999999999876543
No 417
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=97.04 E-value=0.044 Score=58.02 Aligned_cols=203 Identities=16% Similarity=0.206 Sum_probs=113.7
Q ss_pred CcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeCCCch-hhh-hhh
Q 009072 147 SLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTPTPT-IWQ-EYM 221 (544)
Q Consensus 147 ~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~el---g~~viei~~s~~~-~~~-e~l 221 (544)
.+.+++|+.....++.+-++-... . .-.+||.|.+||||-..|++|-+.- .-+++.+|++-.. ... ..+
T Consensus 221 ~~~~iIG~S~am~~ll~~i~~VA~----S--d~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPesLlESEL 294 (550)
T COG3604 221 EVGGIIGRSPAMRQLLKEIEVVAK----S--DSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPESLLESEL 294 (550)
T ss_pred ccccceecCHHHHHHHHHHHHHhc----C--CCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccchHHHHHHH
Confidence 567899999999888887765432 1 1579999999999999999998875 5678999986532 110 000
Q ss_pred hccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHHHHHhcCC--------
Q 009072 222 HNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTH-------- 293 (544)
Q Consensus 222 ~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~~~~~~~-------- 293 (544)
..-..|.... .+-++..+|.. -...-+|+|||--+.-. ++.-|+..++++.
T Consensus 295 FGHeKGAFTG-------A~~~r~GrFEl---------AdGGTLFLDEIGelPL~-----lQaKLLRvLQegEieRvG~~r 353 (550)
T COG3604 295 FGHEKGAFTG-------AINTRRGRFEL---------ADGGTLFLDEIGELPLA-----LQAKLLRVLQEGEIERVGGDR 353 (550)
T ss_pred hccccccccc-------chhccCcceee---------cCCCeEechhhccCCHH-----HHHHHHHHHhhcceeecCCCc
Confidence 0001110000 00011111110 12347999999877542 3333555544422
Q ss_pred ---CcEEEEEccCCCCCCCCccccchHHH------H-HHHhhcCceeEEecCCC-----HHHH-HHHHHHHHHHhC---C
Q 009072 294 ---IPTAVVLTECGKADSVDSTAQSFEEL------Q-SILVDAGARKVALNPIT-----NGSI-KRTLSKICRQEQ---Y 354 (544)
Q Consensus 294 ---~piIiI~t~~~~~~~~d~~~~~l~~l------~-~ll~r~~~~~I~f~p~s-----~~~i-~~~L~~i~~~e~---~ 354 (544)
..+=+|++++ +.++.. + .+.-|....-|.++|+- .--+ ..+++++....| +
T Consensus 354 ~ikVDVRiIAATN----------RDL~~~V~~G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l 423 (550)
T COG3604 354 TIKVDVRVIAATN----------RDLEEMVRDGEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAIL 423 (550)
T ss_pred eeEEEEEEEeccc----------hhHHHHHHcCcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCccc
Confidence 1333444431 122111 1 22233223344455542 1222 233444444444 4
Q ss_pred CCCHHHHHHHHHH-cCCcHHHHHHHHHHhccCC
Q 009072 355 SLSTEQIDLVAQA-SGGDIRQAITSLQFSSLKQ 386 (544)
Q Consensus 355 ~i~~~~l~~Ia~~-s~GDiR~aIn~Lq~~~~~~ 386 (544)
.+++++++.|... --|++|-.-|.++-.+...
T Consensus 424 ~ls~~Al~~L~~y~wPGNVRELen~veRavlla 456 (550)
T COG3604 424 SLSAEALELLSSYEWPGNVRELENVVERAVLLA 456 (550)
T ss_pred ccCHHHHHHHHcCCCCCcHHHHHHHHHHHHHHh
Confidence 6899999998876 4699999999999988754
No 418
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=97.04 E-value=0.0055 Score=59.18 Aligned_cols=22 Identities=41% Similarity=0.628 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHH
Q 009072 179 NVLVITGQAGVGKTATVRQIAS 200 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~ 200 (544)
..++|+||.|+||||+.+.++.
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~~ 52 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVAL 52 (216)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 5799999999999999999974
No 419
>PRK01184 hypothetical protein; Provisional
Probab=97.04 E-value=0.00065 Score=63.71 Aligned_cols=30 Identities=23% Similarity=0.427 Sum_probs=26.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLGARLYEW 209 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg~~viei 209 (544)
..++|+||||+||||+++ +++++|+.++..
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~ 31 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IAREMGIPVVVM 31 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHHHcCCcEEEh
Confidence 478999999999999987 789999887654
No 420
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.03 E-value=0.0046 Score=70.24 Aligned_cols=112 Identities=18% Similarity=0.238 Sum_probs=57.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh---C-CeEEEEeCCCchhhhhhhhccccCcccccchHHHHHHHHHHHhhcCCCCCC
Q 009072 179 NVLVITGQAGVGKTATVRQIASHL---G-ARLYEWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSI 254 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~el---g-~~viei~~s~~~~~~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~ 254 (544)
+.++|+|+|||||||+++++.+.+ + ..-+.+.+|+.+-.. .+.. ..|... ..+..++...... .....
T Consensus 339 ~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~-~L~e-~~g~~a----~Tih~lL~~~~~~--~~~~~ 410 (720)
T TIGR01448 339 KVVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAK-RLGE-VTGLTA----STIHRLLGYGPDT--FRHNH 410 (720)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHH-HHHH-hcCCcc----ccHHHHhhccCCc--cchhh
Confidence 689999999999999999987755 3 123455666654322 1111 112111 1223333211000 00000
Q ss_pred CCCCCCceEEEEecCCCCCchhHHHHHHHHHHHHHhcCCCcEEEEEccCCC
Q 009072 255 PGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPTAVVLTECGK 305 (544)
Q Consensus 255 ~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~~~~~~~~piIiI~t~~~~ 305 (544)
........+|||||+..++.. .+..|+..+.. ...+++++|...
T Consensus 411 ~~~~~~~~llIvDEaSMvd~~-----~~~~Ll~~~~~--~~rlilvGD~~Q 454 (720)
T TIGR01448 411 LEDPIDCDLLIVDESSMMDTW-----LALSLLAALPD--HARLLLVGDTDQ 454 (720)
T ss_pred hhccccCCEEEEeccccCCHH-----HHHHHHHhCCC--CCEEEEECcccc
Confidence 000123569999999998643 12223333332 235777777543
No 421
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=97.02 E-value=0.002 Score=58.34 Aligned_cols=32 Identities=34% Similarity=0.623 Sum_probs=27.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeC
Q 009072 180 VLVITGQAGVGKTATVRQIASHL---GARLYEWDT 211 (544)
Q Consensus 180 ~lLL~GPpG~GKTtla~~lA~el---g~~viei~~ 211 (544)
.++|+|+||+||||+++.++..+ +..++.++.
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~ 35 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDG 35 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcC
Confidence 37899999999999999999998 766666653
No 422
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=97.02 E-value=0.00077 Score=62.66 Aligned_cols=32 Identities=31% Similarity=0.586 Sum_probs=28.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEe
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLGARLYEWD 210 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg~~viei~ 210 (544)
..++|.||+|+||||+++.+|+.++++++...
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l~~~~vd~D 36 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSD 36 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHcCCcEEECC
Confidence 57999999999999999999999998876543
No 423
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=97.02 E-value=0.00082 Score=65.38 Aligned_cols=22 Identities=23% Similarity=0.573 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 009072 181 LVITGQAGVGKTATVRQIASHL 202 (544)
Q Consensus 181 lLL~GPpG~GKTtla~~lA~el 202 (544)
+++.|+|||||||+++.++...
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~~ 22 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKDR 22 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHhc
Confidence 5789999999999999999985
No 424
>PRK10867 signal recognition particle protein; Provisional
Probab=97.02 E-value=0.044 Score=58.29 Aligned_cols=38 Identities=24% Similarity=0.347 Sum_probs=29.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh----CCeEEEEeCCCch
Q 009072 178 TNVLVITGQAGVGKTATVRQIASHL----GARLYEWDTPTPT 215 (544)
Q Consensus 178 ~~~lLL~GPpG~GKTtla~~lA~el----g~~viei~~s~~~ 215 (544)
+..++++||+|+||||++.-+|..+ |..+.-+.+-..|
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R 141 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYR 141 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccc
Confidence 3789999999999999888888754 6667666654433
No 425
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=97.01 E-value=0.0088 Score=59.43 Aligned_cols=37 Identities=27% Similarity=0.257 Sum_probs=28.6
Q ss_pred CCCCccEEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEe
Q 009072 174 DKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWD 210 (544)
Q Consensus 174 g~~~~~~lLL~GPpG~GKTtla~~lA~el---g~~viei~ 210 (544)
|-++....+++||||+|||+++..+|.+. |.+++.+.
T Consensus 32 Gip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis 71 (259)
T TIGR03878 32 GIPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVT 71 (259)
T ss_pred CeECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 66677899999999999999998876642 55555444
No 426
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.01 E-value=0.00081 Score=52.36 Aligned_cols=22 Identities=36% Similarity=0.735 Sum_probs=20.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 009072 181 LVITGQAGVGKTATVRQIASHL 202 (544)
Q Consensus 181 lLL~GPpG~GKTtla~~lA~el 202 (544)
+.+.|+||+||||+++.+++.+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999999996
No 427
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=97.01 E-value=0.0022 Score=66.55 Aligned_cols=35 Identities=26% Similarity=0.602 Sum_probs=28.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhC------CeEEEEeCCC
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLG------ARLYEWDTPT 213 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg------~~viei~~s~ 213 (544)
..++++||+|+||||+++++++++. ..++.+..|.
T Consensus 135 glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~Edpi 175 (358)
T TIGR02524 135 GIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPI 175 (358)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCc
Confidence 6899999999999999999998872 3466555544
No 428
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.99 E-value=0.13 Score=54.81 Aligned_cols=37 Identities=27% Similarity=0.379 Sum_probs=28.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh----CCeEEEEeCCCc
Q 009072 178 TNVLVITGQAGVGKTATVRQIASHL----GARLYEWDTPTP 214 (544)
Q Consensus 178 ~~~lLL~GPpG~GKTtla~~lA~el----g~~viei~~s~~ 214 (544)
+..++++||+|+||||++..+|..+ |..+.-+.+-..
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~ 139 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLY 139 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEecccc
Confidence 3799999999999999988888763 566766655433
No 429
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.99 E-value=0.027 Score=56.11 Aligned_cols=147 Identities=16% Similarity=0.188 Sum_probs=73.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeCCCch-----hhhhhhhccccCccc--ccchHHHHHHHHHHHhhc
Q 009072 179 NVLVITGQAGVGKTATVRQIASHL---GARLYEWDTPTPT-----IWQEYMHNCKTGLEY--TSKLDEFENFVERIRRYG 248 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~el---g~~viei~~s~~~-----~~~e~l~~~~~g~~~--~s~~~~~~~~l~~~~~~~ 248 (544)
..++|.||+|+||||++..++..+ +..+..+..-..+ .|..+... .+... ......+.+.+..+...
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~--~~~~~~~~~~~~~l~~~l~~l~~~- 152 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKT--IGFEVIAVRDEAAMTRALTYFKEE- 152 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhh--cCceEEecCCHHHHHHHHHHHHhc-
Confidence 689999999999999999998876 3445444432222 12221111 12211 12234455555544322
Q ss_pred CCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHHHHHhcCCC-cEEEEEccCCCCCCCCccccchHHHHHHH---h
Q 009072 249 STSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHI-PTAVVLTECGKADSVDSTAQSFEELQSIL---V 324 (544)
Q Consensus 249 ~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~~~~~~~~-piIiI~t~~~~~~~~d~~~~~l~~l~~ll---~ 324 (544)
.+..++|||-......... .++.|.++++.... .++++++.+.. .......+ +
T Consensus 153 ----------~~~D~ViIDt~Gr~~~~~~---~l~el~~~~~~~~~~~~~LVl~a~~~----------~~d~~~~~~~f~ 209 (270)
T PRK06731 153 ----------ARVDYILIDTAGKNYRASE---TVEEMIETMGQVEPDYICLTLSASMK----------SKDMIEIITNFK 209 (270)
T ss_pred ----------CCCCEEEEECCCCCcCCHH---HHHHHHHHHhhhCCCeEEEEEcCccC----------HHHHHHHHHHhC
Confidence 2346899999987643221 22233444333222 24444443211 11122222 2
Q ss_pred hcCceeEEecCCCHHHHHHHHHHHHHH
Q 009072 325 DAGARKVALNPITNGSIKRTLSKICRQ 351 (544)
Q Consensus 325 r~~~~~I~f~p~s~~~i~~~L~~i~~~ 351 (544)
..+...+-|..++.+.-.-.+-.++..
T Consensus 210 ~~~~~~~I~TKlDet~~~G~~l~~~~~ 236 (270)
T PRK06731 210 DIHIDGIVFTKFDETASSGELLKIPAV 236 (270)
T ss_pred CCCCCEEEEEeecCCCCccHHHHHHHH
Confidence 234566777777665544444444443
No 430
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.97 E-value=0.00065 Score=65.59 Aligned_cols=23 Identities=39% Similarity=0.684 Sum_probs=18.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 009072 180 VLVITGQAGVGKTATVRQIASHL 202 (544)
Q Consensus 180 ~lLL~GPpG~GKTtla~~lA~el 202 (544)
..++.||||||||+++..++..+
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCChHHHHHHHHHHh
Confidence 59999999999998887777766
No 431
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=96.97 E-value=0.00072 Score=64.98 Aligned_cols=29 Identities=31% Similarity=0.468 Sum_probs=26.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 009072 181 LVITGQAGVGKTATVRQIASHLGARLYEW 209 (544)
Q Consensus 181 lLL~GPpG~GKTtla~~lA~elg~~viei 209 (544)
+++.||||+||||+++.||+.+|+..+..
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is~ 30 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIST 30 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeeh
Confidence 78999999999999999999999887653
No 432
>PRK00279 adk adenylate kinase; Reviewed
Probab=96.97 E-value=0.00081 Score=64.86 Aligned_cols=30 Identities=27% Similarity=0.398 Sum_probs=27.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 009072 180 VLVITGQAGVGKTATVRQIASHLGARLYEW 209 (544)
Q Consensus 180 ~lLL~GPpG~GKTtla~~lA~elg~~viei 209 (544)
.++++||||+||||+++.||+.+|+..+..
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is~ 31 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPHIST 31 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence 489999999999999999999999877653
No 433
>COG3899 Predicted ATPase [General function prediction only]
Probab=96.97 E-value=0.012 Score=67.92 Aligned_cols=108 Identities=10% Similarity=0.159 Sum_probs=65.4
Q ss_pred CCceEEEEecCCCCCchhHHHHHHHHHHHHHhcCC------CcEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEE
Q 009072 259 KSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTH------IPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVA 332 (544)
Q Consensus 259 ~~~~vIlIDEid~l~~~~~~~~~~~~L~~~~~~~~------~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~ 332 (544)
.+|.|+|+||++.++..+ + +.|..++.... .++..+.+ ....+. ...........|.
T Consensus 153 ~~plVi~leDlhWaD~~S-L----~lL~~lm~~~~~~~~~~n~v~~~h~----------~~~~~~--~~~~~~~~i~~I~ 215 (849)
T COG3899 153 EHPLVIVLEDLHWADSAS-L----KLLQLLMDRIAIGAYRDNEVLLLHP----------LRPTLG--EILKSATNITTIT 215 (849)
T ss_pred cCCeEEEEecccccChhH-H----HHHHHHHHhcchhhhhccccccCCC----------ccchhh--HHhhcCCceeEEe
Confidence 569999999999987642 2 22333333322 11111111 111111 1222333578999
Q ss_pred ecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHhcc
Q 009072 333 LNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIRQAITSLQFSSL 384 (544)
Q Consensus 333 f~p~s~~~i~~~L~~i~~~e~~~i~~~~l~~Ia~~s~GDiR~aIn~Lq~~~~ 384 (544)
+.|++..+....+...+..- ...+...++.|.+.+.|+.=-+-.-++.+..
T Consensus 216 L~PL~~~d~~~lV~~~l~~~-~~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~ 266 (849)
T COG3899 216 LAPLSRADTNQLVAATLGCT-KLLPAPLLELIFEKTKGNPFFIEEFLKALYE 266 (849)
T ss_pred cCcCchhhHHHHHHHHhCCc-ccccchHHHHHHHHhcCCCccHHHHHHHHHh
Confidence 99999999999988876542 3467778899999999985554455555443
No 434
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.97 E-value=0.0094 Score=55.29 Aligned_cols=24 Identities=38% Similarity=0.551 Sum_probs=22.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 009072 179 NVLVITGQAGVGKTATVRQIASHL 202 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~el 202 (544)
..+.|.||+|+||||++++++..+
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 29 ESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhcc
Confidence 689999999999999999999875
No 435
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.96 E-value=0.00063 Score=59.27 Aligned_cols=22 Identities=36% Similarity=0.643 Sum_probs=21.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 009072 181 LVITGQAGVGKTATVRQIASHL 202 (544)
Q Consensus 181 lLL~GPpG~GKTtla~~lA~el 202 (544)
++|+|+||+||||+++.|++++
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 5899999999999999999998
No 436
>PRK04182 cytidylate kinase; Provisional
Probab=96.95 E-value=0.00081 Score=62.51 Aligned_cols=29 Identities=34% Similarity=0.634 Sum_probs=26.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCeEEE
Q 009072 180 VLVITGQAGVGKTATVRQIASHLGARLYE 208 (544)
Q Consensus 180 ~lLL~GPpG~GKTtla~~lA~elg~~vie 208 (544)
.++|+|+|||||||+++.||+.+|++++.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~id 30 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKHVS 30 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEec
Confidence 58999999999999999999999998764
No 437
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.95 E-value=0.004 Score=60.39 Aligned_cols=41 Identities=24% Similarity=0.302 Sum_probs=30.4
Q ss_pred CCCCccEEEEEcCCCCcHHHHHHHHHHHh----CCeEEEEeCCCc
Q 009072 174 DKFSTNVLVITGQAGVGKTATVRQIASHL----GARLYEWDTPTP 214 (544)
Q Consensus 174 g~~~~~~lLL~GPpG~GKTtla~~lA~el----g~~viei~~s~~ 214 (544)
|-+++..+|++||||+|||+++..++.+. |-.++.+....+
T Consensus 15 Gip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~ 59 (226)
T PF06745_consen 15 GIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEP 59 (226)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-
T ss_pred CCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCC
Confidence 66777899999999999999998776442 778777765543
No 438
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=96.95 E-value=0.017 Score=52.52 Aligned_cols=22 Identities=41% Similarity=0.567 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 009072 180 VLVITGQAGVGKTATVRQIASH 201 (544)
Q Consensus 180 ~lLL~GPpG~GKTtla~~lA~e 201 (544)
.+++.|+||+||||+++.+...
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~ 23 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQG 23 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4788899999999999999864
No 439
>PRK08487 DNA polymerase III subunit delta; Validated
Probab=96.94 E-value=0.084 Score=54.36 Aligned_cols=58 Identities=10% Similarity=0.050 Sum_probs=54.2
Q ss_pred ceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHhccC
Q 009072 328 ARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIRQAITSLQFSSLK 385 (544)
Q Consensus 328 ~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~l~~Ia~~s~GDiR~aIn~Lq~~~~~ 385 (544)
...+.|.+++..++.+++...+.+.|+.+++++++.|+..++||+..+.+-|+-+++-
T Consensus 127 ~~~v~~~~~~~~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g~dl~~l~~ELeKL~ly 184 (328)
T PRK08487 127 AVFVRFFKPNAREALELLQERAKELGLDIDQNALNHLYFIHNEDLALAANELEKLAIL 184 (328)
T ss_pred ceEEEeeCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcHHHHHHHHHHHHHHh
Confidence 4579999999999999999999999999999999999999999999999999888764
No 440
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.93 E-value=0.0082 Score=55.60 Aligned_cols=25 Identities=20% Similarity=0.403 Sum_probs=23.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 009072 178 TNVLVITGQAGVGKTATVRQIASHL 202 (544)
Q Consensus 178 ~~~lLL~GPpG~GKTtla~~lA~el 202 (544)
...+.|.||+|+||||++++++..+
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCC
Confidence 3789999999999999999999876
No 441
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=96.93 E-value=0.036 Score=50.03 Aligned_cols=22 Identities=32% Similarity=0.530 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 009072 180 VLVITGQAGVGKTATVRQIASH 201 (544)
Q Consensus 180 ~lLL~GPpG~GKTtla~~lA~e 201 (544)
.+++.|+||+||||+++.+...
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~ 23 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYD 23 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4889999999999999999754
No 442
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=96.93 E-value=0.0017 Score=66.14 Aligned_cols=59 Identities=17% Similarity=0.308 Sum_probs=48.3
Q ss_pred chhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhC-CeEEEE
Q 009072 149 EELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLG-ARLYEW 209 (544)
Q Consensus 149 ~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg-~~viei 209 (544)
+++.|-++.+.++-++++..-.. .....++++|.||+|+||||+++.|.+-+. +.++.+
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g--~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y~~Y~l 120 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQG--LEERKRILLLLGPVGGGKSSLAELLKRGLEEYPIYTL 120 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhc--cCccceEEEEECCCCCCHHHHHHHHHHHhheEEEEEe
Confidence 48999999999999999987654 333458999999999999999999998873 455444
No 443
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.93 E-value=0.022 Score=64.16 Aligned_cols=25 Identities=40% Similarity=0.644 Sum_probs=22.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 009072 178 TNVLVITGQAGVGKTATVRQIASHL 202 (544)
Q Consensus 178 ~~~lLL~GPpG~GKTtla~~lA~el 202 (544)
+++++|.||+|+||||++..||..+
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~ 209 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARC 209 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhH
Confidence 3689999999999999999999765
No 444
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=96.91 E-value=0.0034 Score=60.45 Aligned_cols=24 Identities=29% Similarity=0.461 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 009072 179 NVLVITGQAGVGKTATVRQIASHL 202 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~el 202 (544)
-.+=|.|++|+||||+.+.||.-+
T Consensus 54 e~vGiiG~NGaGKSTLlkliaGi~ 77 (249)
T COG1134 54 ERVGIIGHNGAGKSTLLKLIAGIY 77 (249)
T ss_pred CEEEEECCCCCcHHHHHHHHhCcc
Confidence 578899999999999999999876
No 445
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.90 E-value=0.0061 Score=56.55 Aligned_cols=24 Identities=29% Similarity=0.498 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 009072 179 NVLVITGQAGVGKTATVRQIASHL 202 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~el 202 (544)
..+.|.||+|+||||++++++..+
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 27 EIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 689999999999999999999865
No 446
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.90 E-value=0.043 Score=58.05 Aligned_cols=25 Identities=36% Similarity=0.587 Sum_probs=22.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 009072 178 TNVLVITGQAGVGKTATVRQIASHL 202 (544)
Q Consensus 178 ~~~lLL~GPpG~GKTtla~~lA~el 202 (544)
+..+.|.||+|+||||++..||..+
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~ 215 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARA 215 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4789999999999999999998764
No 447
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=96.89 E-value=0.00098 Score=61.42 Aligned_cols=29 Identities=31% Similarity=0.609 Sum_probs=26.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCeEEE
Q 009072 180 VLVITGQAGVGKTATVRQIASHLGARLYE 208 (544)
Q Consensus 180 ~lLL~GPpG~GKTtla~~lA~elg~~vie 208 (544)
.+.++|++|+||||+++.+|+.+|++++.
T Consensus 2 iI~i~G~~GSGKstia~~la~~lg~~~~~ 30 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKLSLKLIS 30 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 58999999999999999999999988754
No 448
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=96.89 E-value=0.032 Score=50.53 Aligned_cols=22 Identities=41% Similarity=0.573 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 009072 180 VLVITGQAGVGKTATVRQIASH 201 (544)
Q Consensus 180 ~lLL~GPpG~GKTtla~~lA~e 201 (544)
.+++.|++|+||||+++.+...
T Consensus 4 ki~i~G~~~~GKtsl~~~~~~~ 25 (164)
T cd04145 4 KLVVVGGGGVGKSALTIQFIQS 25 (164)
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 6899999999999999988764
No 449
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.88 E-value=0.014 Score=60.37 Aligned_cols=114 Identities=16% Similarity=0.302 Sum_probs=69.0
Q ss_pred CCCCccEEEEEcCCCCcHHHHHHHHHHHhC--CeEEEEeCCCch-hhh---hhhhccccCcccccchHHHHHHHHHHHhh
Q 009072 174 DKFSTNVLVITGQAGVGKTATVRQIASHLG--ARLYEWDTPTPT-IWQ---EYMHNCKTGLEYTSKLDEFENFVERIRRY 247 (544)
Q Consensus 174 g~~~~~~lLL~GPpG~GKTtla~~lA~elg--~~viei~~s~~~-~~~---e~l~~~~~g~~~~s~~~~~~~~l~~~~~~ 247 (544)
|..+...+|+.|.||+||||++-.+|..+. .+++.+.....- .++ +.+.-....+ +.-...++++++..+..
T Consensus 89 G~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~~vLYVsGEES~~QiklRA~RL~~~~~~l-~l~aEt~~e~I~~~l~~- 166 (456)
T COG1066 89 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGKVLYVSGEESLQQIKLRADRLGLPTNNL-YLLAETNLEDIIAELEQ- 166 (456)
T ss_pred CcccccEEEEccCCCCCHHHHHHHHHHHHHhcCcEEEEeCCcCHHHHHHHHHHhCCCccce-EEehhcCHHHHHHHHHh-
Confidence 556668999999999999999988887762 367777665422 111 1111101111 11122345566665543
Q ss_pred cCCCCCCCCCCCCceEEEEecCCCCCch---------hHHHHHHHHHHHHHhcCCCcEEEEE
Q 009072 248 GSTSPSIPGESKSSAILLIDDLPVTNGR---------TAFERLRQCLLLLVRSTHIPTAVVL 300 (544)
Q Consensus 248 ~~l~~~~~~~~~~~~vIlIDEid~l~~~---------~~~~~~~~~L~~~~~~~~~piIiI~ 300 (544)
.+|.+++||-|+.+... ...+..-..|.++.+....+++++.
T Consensus 167 -----------~~p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK~~~i~~fiVG 217 (456)
T COG1066 167 -----------EKPDLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRLAKTKNIAIFIVG 217 (456)
T ss_pred -----------cCCCEEEEeccceeecccccCCCCcHHHHHHHHHHHHHHHHHcCCeEEEEE
Confidence 45889999999877332 1233344567777777777666664
No 450
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=96.87 E-value=0.0012 Score=62.36 Aligned_cols=35 Identities=29% Similarity=0.434 Sum_probs=29.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeCCCc
Q 009072 180 VLVITGQAGVGKTATVRQIASHL---GARLYEWDTPTP 214 (544)
Q Consensus 180 ~lLL~GPpG~GKTtla~~lA~el---g~~viei~~s~~ 214 (544)
.+.|.||+|+||||+++.|++++ |+.++....+..
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~~~~~~ 39 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERLEARGYEVVLTREPGG 39 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCC
Confidence 58899999999999999999998 778777665553
No 451
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.87 E-value=0.00091 Score=61.41 Aligned_cols=26 Identities=35% Similarity=0.578 Sum_probs=21.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCeEE
Q 009072 181 LVITGQAGVGKTATVRQIASHLGARLY 207 (544)
Q Consensus 181 lLL~GPpG~GKTtla~~lA~elg~~vi 207 (544)
+.|+|+|||||||+++.|++. |+.++
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~v 27 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPVV 27 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EEE
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeEE
Confidence 789999999999999999999 88866
No 452
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=96.87 E-value=0.0079 Score=55.22 Aligned_cols=24 Identities=33% Similarity=0.569 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 009072 179 NVLVITGQAGVGKTATVRQIASHL 202 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~el 202 (544)
+..+++||.|+|||+++++++--+
T Consensus 22 ~~~~i~G~NgsGKS~~l~~i~~~~ 45 (162)
T cd03227 22 SLTIITGPNGSGKSTILDAIGLAL 45 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 589999999999999999986543
No 453
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=96.87 E-value=0.0087 Score=56.16 Aligned_cols=24 Identities=25% Similarity=0.595 Sum_probs=22.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 009072 179 NVLVITGQAGVGKTATVRQIASHL 202 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~el 202 (544)
+.++|.||+|+||+|++..|+++.
T Consensus 3 r~ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 3 RPIVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred cEEEEECCCCCCHHHHHHHHHhcC
Confidence 689999999999999999999986
No 454
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.86 E-value=0.039 Score=53.80 Aligned_cols=24 Identities=33% Similarity=0.563 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhC
Q 009072 180 VLVITGQAGVGKTATVRQIASHLG 203 (544)
Q Consensus 180 ~lLL~GPpG~GKTtla~~lA~elg 203 (544)
.+++.||+|+|||+++..+...+.
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~~ 38 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYLR 38 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhc
Confidence 689999999999999999988764
No 455
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.85 E-value=0.0037 Score=64.59 Aligned_cols=25 Identities=28% Similarity=0.347 Sum_probs=22.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhC
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLG 203 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg 203 (544)
...+|+|||||||||+++.+|+.+.
T Consensus 134 QR~LIvG~pGtGKTTLl~~la~~i~ 158 (380)
T PRK12608 134 QRGLIVAPPRAGKTVLLQQIAAAVA 158 (380)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH
Confidence 5689999999999999999999873
No 456
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=96.85 E-value=0.013 Score=63.81 Aligned_cols=168 Identities=17% Similarity=0.215 Sum_probs=88.9
Q ss_pred CCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCCchhhhhhhhccccCcccccchHHHHHHHHHHHhhcCCCCC
Q 009072 174 DKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPS 253 (544)
Q Consensus 174 g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~~~~~~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~ 253 (544)
+..+++.++++||||+|||+.++.+|.+ +.....++++.. ....+......+...++.+..+.
T Consensus 14 ~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~a~~~~----- 76 (494)
T COG0464 14 GIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEI-----------LSKYVGESELRLRELFEEAEKLA----- 76 (494)
T ss_pred CCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchh-----------hhhhhhHHHHHHHHHHHHHHHhC-----
Confidence 4445589999999999999999999999 444444444431 11122233456667777776553
Q ss_pred CCCCCCCceEEEEecCCCCCchh------HHHHHHHHHHHHHhcC-CCcEEEEEccCCCCCCCCccccchHHHHHHHhhc
Q 009072 254 IPGESKSSAILLIDDLPVTNGRT------AFERLRQCLLLLVRST-HIPTAVVLTECGKADSVDSTAQSFEELQSILVDA 326 (544)
Q Consensus 254 ~~~~~~~~~vIlIDEid~l~~~~------~~~~~~~~L~~~~~~~-~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~ 326 (544)
|.++++||+|.+.... ...++...+...+... +.. +++...++.....+ +.+.++
T Consensus 77 -------~~ii~~d~~~~~~~~~~~~~~~~~~~v~~~l~~~~d~~~~~~-v~~~~~~~~~~~~~----------~a~~~~ 138 (494)
T COG0464 77 -------PSIIFIDEIDALAPKRSSDQGEVERRVVAQLLALMDGLKRGQ-VIVIGATNRPDGLD----------PAKRRP 138 (494)
T ss_pred -------CCeEeechhhhcccCccccccchhhHHHHHHHHhcccccCCc-eEEEeecCCccccC----------hhHhCc
Confidence 4799999999874321 1123333344333322 334 44443332222212 111111
Q ss_pred C--ceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHH
Q 009072 327 G--ARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIRQAIT 377 (544)
Q Consensus 327 ~--~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~l~~Ia~~s~GDiR~aIn 377 (544)
+ ...+.+..+.......++....... ...++..+..++..+.|....=+.
T Consensus 139 ~~~~~~~~~~~~~~~~~~ei~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~~ 190 (494)
T COG0464 139 GRFDREIEVNLPDEAGRLEILQIHTRLM-FLGPPGTGKTLAARTVGKSGADLG 190 (494)
T ss_pred cccceeeecCCCCHHHHHHHHHHHHhcC-CCcccccHHHHHHhcCCccHHHHH
Confidence 1 3345555555554444444332221 122255677777776665444333
No 457
>PRK14526 adenylate kinase; Provisional
Probab=96.85 E-value=0.0011 Score=63.61 Aligned_cols=29 Identities=24% Similarity=0.352 Sum_probs=25.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCeEEE
Q 009072 180 VLVITGQAGVGKTATVRQIASHLGARLYE 208 (544)
Q Consensus 180 ~lLL~GPpG~GKTtla~~lA~elg~~vie 208 (544)
.++|.||||+||||+++.||+.+++..+.
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~~~~~is 30 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNELNYYHIS 30 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceee
Confidence 37899999999999999999999877653
No 458
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.85 E-value=0.008 Score=59.95 Aligned_cols=32 Identities=19% Similarity=0.378 Sum_probs=22.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEe
Q 009072 179 NVLVITGQAGVGKTATVRQIASHL---GARLYEWD 210 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~el---g~~viei~ 210 (544)
+.++|+|.||+||||+|+.|++.+ +..++.++
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~ 36 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIIS 36 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEc
Confidence 479999999999999999999875 56666665
No 459
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.85 E-value=0.032 Score=53.89 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 009072 179 NVLVITGQAGVGKTATVRQIASH 201 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~e 201 (544)
+.++|+||.|.|||++.+.++--
T Consensus 31 ~~~~itG~n~~gKs~~l~~i~~~ 53 (218)
T cd03286 31 RILVLTGPNMGGKSTLLRTVCLA 53 (218)
T ss_pred cEEEEECCCCCchHHHHHHHHHH
Confidence 68999999999999998888754
No 460
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=96.85 E-value=0.032 Score=51.64 Aligned_cols=23 Identities=22% Similarity=0.364 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 009072 179 NVLVITGQAGVGKTATVRQIASH 201 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~e 201 (544)
+.++|.|+||+||||+++.+...
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~ 24 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEG 24 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 57899999999999999998854
No 461
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=96.84 E-value=0.021 Score=55.81 Aligned_cols=23 Identities=30% Similarity=0.501 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 009072 179 NVLVITGQAGVGKTATVRQIASH 201 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~e 201 (544)
+.++|+||..+||||+++.+|-.
T Consensus 44 ~~~iiTGpN~sGKSt~lk~i~~~ 66 (235)
T PF00488_consen 44 RIIIITGPNMSGKSTFLKQIGLI 66 (235)
T ss_dssp SEEEEESSTTSSHHHHHHHHHHH
T ss_pred eEEEEeCCCccchhhHHHHHHHH
Confidence 68999999999999999998764
No 462
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.84 E-value=0.0098 Score=57.33 Aligned_cols=24 Identities=33% Similarity=0.491 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 009072 179 NVLVITGQAGVGKTATVRQIASHL 202 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~el 202 (544)
-.+=|.||+||||||+++++|.-.
T Consensus 34 e~lgivGeSGsGKSTL~r~l~Gl~ 57 (252)
T COG1124 34 ETLGIVGESGSGKSTLARLLAGLE 57 (252)
T ss_pred CEEEEEcCCCCCHHHHHHHHhccc
Confidence 679999999999999999999754
No 463
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=96.83 E-value=0.012 Score=53.11 Aligned_cols=22 Identities=41% Similarity=0.634 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 009072 180 VLVITGQAGVGKTATVRQIASH 201 (544)
Q Consensus 180 ~lLL~GPpG~GKTtla~~lA~e 201 (544)
.+++.|+||+||||+++.++..
T Consensus 3 ki~iiG~~~vGKTsl~~~~~~~ 24 (162)
T cd04138 3 KLVVVGAGGVGKSALTIQLIQN 24 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4788999999999999999864
No 464
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=96.83 E-value=0.022 Score=51.69 Aligned_cols=22 Identities=23% Similarity=0.551 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 009072 180 VLVITGQAGVGKTATVRQIASH 201 (544)
Q Consensus 180 ~lLL~GPpG~GKTtla~~lA~e 201 (544)
.+++.|+||+||||+++.++..
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~ 23 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEG 23 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4889999999999999999865
No 465
>PLN02674 adenylate kinase
Probab=96.83 E-value=0.0024 Score=62.55 Aligned_cols=30 Identities=20% Similarity=0.258 Sum_probs=26.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCeEEE
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLGARLYE 208 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg~~vie 208 (544)
..++|.||||+||||.++.||+.+|+..+.
T Consensus 32 ~~i~l~G~PGsGKgT~a~~La~~~~~~his 61 (244)
T PLN02674 32 KRLILIGPPGSGKGTQSPIIKDEYCLCHLA 61 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHcCCcEEc
Confidence 579999999999999999999999977653
No 466
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=96.82 E-value=0.034 Score=50.88 Aligned_cols=23 Identities=26% Similarity=0.524 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 009072 179 NVLVITGQAGVGKTATVRQIASH 201 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~e 201 (544)
-.+++.|+||+|||++++.++..
T Consensus 4 ~ki~vvG~~~~GKSsl~~~~~~~ 26 (167)
T cd01867 4 FKLLLIGDSGVGKSCLLLRFSED 26 (167)
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 36899999999999999999864
No 467
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.82 E-value=0.0092 Score=58.58 Aligned_cols=110 Identities=15% Similarity=0.208 Sum_probs=58.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCeE--EEEeCCCchhhhhhhhccccCcccccchHHHHHHHHHHH-------hhcC
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLGARL--YEWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIR-------RYGS 249 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg~~v--iei~~s~~~~~~e~l~~~~~g~~~~s~~~~~~~~l~~~~-------~~~~ 249 (544)
..+-|.|.+||||||+++++.+-....- +.++.-+... +......+.+.+.++... +|..
T Consensus 40 e~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~-----------~~~~~~~~~v~elL~~Vgl~~~~~~ryPh 108 (268)
T COG4608 40 ETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITK-----------LSKEERRERVLELLEKVGLPEEFLYRYPH 108 (268)
T ss_pred CEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhh-----------cchhHHHHHHHHHHHHhCCCHHHhhcCCc
Confidence 6899999999999999999998764211 2222221100 000001111222222211 1110
Q ss_pred CCCCCCCC-----------CCCceEEEEecCCCCCchhHHHHHHHHHHHHHhcCCCcEEEEEcc
Q 009072 250 TSPSIPGE-----------SKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPTAVVLTE 302 (544)
Q Consensus 250 l~~~~~~~-----------~~~~~vIlIDEid~l~~~~~~~~~~~~L~~~~~~~~~piIiI~t~ 302 (544)
.+.|+ .-+|.+|+.||.-.+..-+....+.+.|..+-+.-....+||.-|
T Consensus 109 ---elSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHD 169 (268)
T COG4608 109 ---ELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHD 169 (268)
T ss_pred ---ccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEE
Confidence 01111 136889999999776443333345566666666666677887644
No 468
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=96.82 E-value=0.0012 Score=67.03 Aligned_cols=29 Identities=24% Similarity=0.359 Sum_probs=25.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh-CCeEE
Q 009072 179 NVLVITGQAGVGKTATVRQIASHL-GARLY 207 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~el-g~~vi 207 (544)
..++|.||||+||||+++.|++++ ++.++
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~~~~~~l 32 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKNPKAVNV 32 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHCCCCEEE
Confidence 679999999999999999999998 65544
No 469
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=96.82 E-value=0.0078 Score=56.65 Aligned_cols=38 Identities=26% Similarity=0.357 Sum_probs=27.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh-------------CCeEEEEeCCCc
Q 009072 177 STNVLVITGQAGVGKTATVRQIASHL-------------GARLYEWDTPTP 214 (544)
Q Consensus 177 ~~~~lLL~GPpG~GKTtla~~lA~el-------------g~~viei~~s~~ 214 (544)
+....+|+||||+|||+++..+|..+ +..++.++....
T Consensus 31 ~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 31 RGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 34689999999999999998888765 235666665554
No 470
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=96.81 E-value=0.008 Score=66.50 Aligned_cols=37 Identities=35% Similarity=0.401 Sum_probs=27.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhC----C---eEEEEeCCCch
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLG----A---RLYEWDTPTPT 215 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg----~---~viei~~s~~~ 215 (544)
+..+|+|+|||||||++..+...+. . .-+-+-+|+.+
T Consensus 161 ~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGk 204 (586)
T TIGR01447 161 NFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGK 204 (586)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHH
Confidence 7899999999999999988766541 1 23556677643
No 471
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.80 E-value=0.0086 Score=57.10 Aligned_cols=25 Identities=16% Similarity=0.473 Sum_probs=22.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhC
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLG 203 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg 203 (544)
..+.|.||+|+||||++++++..+.
T Consensus 34 e~~~i~G~nGsGKSTLl~~l~G~~~ 58 (202)
T cd03233 34 EMVLVLGRPGSGCSTLLKALANRTE 58 (202)
T ss_pred cEEEEECCCCCCHHHHHHHhcccCC
Confidence 6899999999999999999998754
No 472
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.80 E-value=0.014 Score=57.56 Aligned_cols=24 Identities=38% Similarity=0.631 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 009072 179 NVLVITGQAGVGKTATVRQIASHL 202 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~el 202 (544)
..+.|.||+|+||||++++++..+
T Consensus 26 e~~~i~G~NGsGKSTLlk~L~G~~ 49 (246)
T cd03237 26 EVIGILGPNGIGKTTFIKMLAGVL 49 (246)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 689999999999999999999875
No 473
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.80 E-value=0.0012 Score=62.16 Aligned_cols=29 Identities=17% Similarity=0.392 Sum_probs=25.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCeEE
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLGARLY 207 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg~~vi 207 (544)
..++|.||+|+||||+++.|+..++..+.
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~~~~~ 31 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQTQLL 31 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCCeEE
Confidence 57999999999999999999998876543
No 474
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=96.79 E-value=0.02 Score=52.45 Aligned_cols=35 Identities=29% Similarity=0.497 Sum_probs=30.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeCCC
Q 009072 179 NVLVITGQAGVGKTATVRQIASHL---GARLYEWDTPT 213 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~el---g~~viei~~s~ 213 (544)
..+.|+|.+|+||||+|.++.+.| |+.++-++.-.
T Consensus 24 ~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDn 61 (197)
T COG0529 24 AVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDN 61 (197)
T ss_pred eEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChh
Confidence 689999999999999999999986 78877776544
No 475
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=96.79 E-value=0.0012 Score=59.71 Aligned_cols=27 Identities=26% Similarity=0.407 Sum_probs=24.0
Q ss_pred EEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 009072 183 ITGQAGVGKTATVRQIASHLGARLYEW 209 (544)
Q Consensus 183 L~GPpG~GKTtla~~lA~elg~~viei 209 (544)
|.||||+||||+++.||+++|+..+..
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~~is~ 27 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLVHISV 27 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSEEEEH
T ss_pred CcCCCCCChHHHHHHHHHhcCcceech
Confidence 579999999999999999999876653
No 476
>KOG1808 consensus AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=96.78 E-value=0.0056 Score=73.98 Aligned_cols=141 Identities=14% Similarity=0.264 Sum_probs=83.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCCchhhhhhhhcc----ccCcccccchHHHHHHHHHHHhhcCCCCCCC
Q 009072 180 VLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIWQEYMHNC----KTGLEYTSKLDEFENFVERIRRYGSTSPSIP 255 (544)
Q Consensus 180 ~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~~~~~~e~l~~~----~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~ 255 (544)
.+||-||.|||||..+..+|+..|.++++++.-....+++++..- ...+.+.+ ...+..+
T Consensus 442 pillqG~tssGKtsii~~la~~~g~~~vrinnhehtd~qeyig~y~~~~~g~l~fre-----g~LV~Al----------- 505 (1856)
T KOG1808|consen 442 PILLQGPTSSGKTSIIKELARATGKNIVRINNHEHTDLQEYIGTYVADDNGDLVFRE-----GVLVQAL----------- 505 (1856)
T ss_pred CeEEecCcCcCchhHHHHHHHHhccCceehhccccchHHHHHHhhhcCCCCCeeeeh-----hHHHHHH-----------
Confidence 599999999999999999999999999999998877777776621 11121111 0112222
Q ss_pred CCCCCceEEEEecCCCCCchhHHHHHHHHHHHHHhcCCC-------------cEEEEEccCCCCCCCCccccchHHHHHH
Q 009072 256 GESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHI-------------PTAVVLTECGKADSVDSTAQSFEELQSI 322 (544)
Q Consensus 256 ~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~~~~~~~~-------------piIiI~t~~~~~~~~d~~~~~l~~l~~l 322 (544)
.+...+++||+..... .+.++|.+++...+. |-+.+..+.+. ...+..+-...+++
T Consensus 506 ---r~G~~~vlD~lnla~~-----dvL~aLnrllddnRel~ipe~~rlv~~h~~f~lfatqn~---~~~y~grk~lsRa~ 574 (1856)
T KOG1808|consen 506 ---RNGDWIVLDELNLAPH-----DVLEALNRLLDDNRELFIPETQRLVKAHPEFMLFATQNP---PGTYGGRKILSRAL 574 (1856)
T ss_pred ---HhCCEEEeccccccch-----HHHHHHHhhhhhhccccccccceeeccCcchhhhhhccC---ccccchhhhhhhcc
Confidence 2356899999987543 334556666554221 22222222111 11122222223444
Q ss_pred HhhcCceeEEecCCCHHHHHHHHHHHH
Q 009072 323 LVDAGARKVALNPITNGSIKRTLSKIC 349 (544)
Q Consensus 323 l~r~~~~~I~f~p~s~~~i~~~L~~i~ 349 (544)
.++ ...++|-..+.+++..++..+|
T Consensus 575 ~~r--f~e~~f~~~~e~e~~~i~~~~~ 599 (1856)
T KOG1808|consen 575 RNR--FIELHFDDIGEEELEEILEHRC 599 (1856)
T ss_pred ccc--chhhhhhhcCchhhhhhhcccc
Confidence 443 4567777777777777666654
No 477
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=96.77 E-value=0.0014 Score=62.19 Aligned_cols=28 Identities=36% Similarity=0.489 Sum_probs=26.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCeE
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLGARL 206 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg~~v 206 (544)
..++++|+||+||||+++.+|.++|+.+
T Consensus 4 ~~i~i~G~~G~GKst~a~~l~~~~~~~~ 31 (197)
T PRK12339 4 TIHFIGGIPGVGKTSISGYIARHRAIDI 31 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCeE
Confidence 6899999999999999999999998765
No 478
>PRK04328 hypothetical protein; Provisional
Probab=96.77 E-value=0.023 Score=56.11 Aligned_cols=38 Identities=21% Similarity=0.239 Sum_probs=28.6
Q ss_pred CCCCccEEEEEcCCCCcHHHHHHHHHHH---hCCeEEEEeC
Q 009072 174 DKFSTNVLVITGQAGVGKTATVRQIASH---LGARLYEWDT 211 (544)
Q Consensus 174 g~~~~~~lLL~GPpG~GKTtla~~lA~e---lg~~viei~~ 211 (544)
|-++...+|++||||+|||+++..++.+ .|.+.+.+..
T Consensus 19 Gip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ 59 (249)
T PRK04328 19 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVAL 59 (249)
T ss_pred CCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEe
Confidence 5666789999999999999998876654 2555555544
No 479
>PRK08233 hypothetical protein; Provisional
Probab=96.76 E-value=0.0017 Score=60.48 Aligned_cols=25 Identities=24% Similarity=0.466 Sum_probs=23.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhC
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLG 203 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg 203 (544)
..+.+.|+||+||||+++.|+.+++
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCC
Confidence 6789999999999999999999986
No 480
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.76 E-value=0.026 Score=54.74 Aligned_cols=39 Identities=23% Similarity=0.188 Sum_probs=29.5
Q ss_pred CCCCccEEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeCC
Q 009072 174 DKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTP 212 (544)
Q Consensus 174 g~~~~~~lLL~GPpG~GKTtla~~lA~el---g~~viei~~s 212 (544)
|-++...+++.||||+|||+++..++.+. |..++.+...
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e 57 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTE 57 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 56666899999999999999998776542 5566655543
No 481
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.74 E-value=0.0016 Score=60.89 Aligned_cols=26 Identities=31% Similarity=0.616 Sum_probs=23.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCe
Q 009072 180 VLVITGQAGVGKTATVRQIASHLGAR 205 (544)
Q Consensus 180 ~lLL~GPpG~GKTtla~~lA~elg~~ 205 (544)
.++|.||||+||||+|+.||+.+++.
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i~ 27 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGLP 27 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 48999999999999999999996654
No 482
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.74 E-value=0.054 Score=58.24 Aligned_cols=24 Identities=38% Similarity=0.650 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 009072 179 NVLVITGQAGVGKTATVRQIASHL 202 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~el 202 (544)
.+++|.||+|+||||++..||..+
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKLA~~~ 280 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKLAARC 280 (484)
T ss_pred cEEEEECCCCccHHHHHHHHHHHH
Confidence 689999999999999999999765
No 483
>PF13479 AAA_24: AAA domain
Probab=96.74 E-value=0.0031 Score=60.75 Aligned_cols=20 Identities=30% Similarity=0.478 Sum_probs=18.4
Q ss_pred cEEEEEcCCCCcHHHHHHHH
Q 009072 179 NVLVITGQAGVGKTATVRQI 198 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~l 198 (544)
-.++||||||+||||++..+
T Consensus 4 ~~~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 4 IKILIYGPPGSGKTTLAASL 23 (213)
T ss_pred eEEEEECCCCCCHHHHHHhC
Confidence 57999999999999999887
No 484
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=96.74 E-value=0.047 Score=49.68 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 009072 181 LVITGQAGVGKTATVRQIASHL 202 (544)
Q Consensus 181 lLL~GPpG~GKTtla~~lA~el 202 (544)
++|.|++|+||||++..+....
T Consensus 2 i~~vG~~~~GKstLi~~l~~~~ 23 (167)
T cd04160 2 VLILGLDNAGKTTFLEQLKTLF 23 (167)
T ss_pred EEEEecCCCCHHHHHHHHhhhc
Confidence 7899999999999999997653
No 485
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=96.74 E-value=0.047 Score=60.34 Aligned_cols=175 Identities=13% Similarity=0.123 Sum_probs=95.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCC--eEEEEeCCCchhhhhhhhccccCcccccchHHHHHHHHHHHhhcCCCCCCCC
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLGA--RLYEWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPG 256 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg~--~viei~~s~~~~~~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~ 256 (544)
..++|.|++|+||+|+++.++.-+.- +++++..+.... ....|.+ +...+..-.. .+.+...
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~------~L~Gg~D-------l~~~l~~g~~--~~~pGll- 89 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADD------RLLGGLD-------LAATLRAGRP--VAQRGLL- 89 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHH------HccCCch-------HHhHhhcCCc--CCCCCce-
Confidence 57999999999999999999998754 555443221100 0112221 1112211110 0111111
Q ss_pred CCCCceEEEEecCCCCCchhHHHHHHHHHHHHHhcCCC-------------cEEEEEccCCCCCCCCccccchHHHHHHH
Q 009072 257 ESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHI-------------PTAVVLTECGKADSVDSTAQSFEELQSIL 323 (544)
Q Consensus 257 ~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~~~~~~~~-------------piIiI~t~~~~~~~~d~~~~~l~~l~~ll 323 (544)
..-...||++||+..+.. ++++.|++.++.+.. +.++|+++... .+...+ -.+++
T Consensus 90 a~Ah~GvL~lDe~n~~~~-----~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~-----~~~~~L--~~~lL 157 (584)
T PRK13406 90 AEADGGVLVLAMAERLEP-----GTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGA-----EEDERA--PAALA 157 (584)
T ss_pred eeccCCEEEecCcccCCH-----HHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCCh-----hcccCC--CHHhH
Confidence 112346999999998754 466778888876532 45566653111 111111 14678
Q ss_pred hhcCceeEEecCCCHHHHH-------HHHHHHHHHhCCCCCHHHHHHHHHHcC--C--cHHHHHHHHHHh
Q 009072 324 VDAGARKVALNPITNGSIK-------RTLSKICRQEQYSLSTEQIDLVAQASG--G--DIRQAITSLQFS 382 (544)
Q Consensus 324 ~r~~~~~I~f~p~s~~~i~-------~~L~~i~~~e~~~i~~~~l~~Ia~~s~--G--DiR~aIn~Lq~~ 382 (544)
.|+ ...|.+..++..+.. .++.-...-.++.++++.++.+++.+. | ..|..+..+...
T Consensus 158 DRf-~l~v~v~~~~~~~~~~~~~~~~~I~~AR~rl~~v~v~~~~l~~i~~~~~~~gv~S~Ra~i~llraA 226 (584)
T PRK13406 158 DRL-AFHLDLDGLALRDAREIPIDADDIAAARARLPAVGPPPEAIAALCAAAAALGIASLRAPLLALRAA 226 (584)
T ss_pred hhe-EEEEEcCCCChHHhcccCCCHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCCCcCHHHHHHHHH
Confidence 887 567888877755432 111111112467899999988876521 2 456655555443
No 486
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.74 E-value=0.0064 Score=63.58 Aligned_cols=35 Identities=31% Similarity=0.416 Sum_probs=27.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCe--EEEEeCCC
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLGAR--LYEWDTPT 213 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg~~--viei~~s~ 213 (544)
..+.++||+|||||++++++...+... .+-+.+|+
T Consensus 23 ~~~fv~G~~GtGKs~l~~~i~~~~~~~~~~~~~~a~t 59 (364)
T PF05970_consen 23 LNFFVTGPAGTGKSFLIKAIIDYLRSRGKKVLVTAPT 59 (364)
T ss_pred cEEEEEcCCCCChhHHHHHHHHHhccccceEEEecch
Confidence 789999999999999999999887432 33344443
No 487
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=96.72 E-value=0.012 Score=65.44 Aligned_cols=37 Identities=32% Similarity=0.467 Sum_probs=28.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh---C---CeEEEEeCCCch
Q 009072 179 NVLVITGQAGVGKTATVRQIASHL---G---ARLYEWDTPTPT 215 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~el---g---~~viei~~s~~~ 215 (544)
+..+|+|+|||||||+++.+...+ + ...+.+.+|+.+
T Consensus 168 ~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgk 210 (615)
T PRK10875 168 RISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGK 210 (615)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHH
Confidence 689999999999999998877654 1 124566777754
No 488
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.72 E-value=0.0014 Score=61.18 Aligned_cols=26 Identities=19% Similarity=0.454 Sum_probs=23.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCC
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLGA 204 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg~ 204 (544)
..++|.||||+||||+++.|+..++.
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~~ 27 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLAG 27 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCc
Confidence 47899999999999999999998754
No 489
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.72 E-value=0.0093 Score=55.60 Aligned_cols=24 Identities=29% Similarity=0.519 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 009072 179 NVLVITGQAGVGKTATVRQIASHL 202 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~el 202 (544)
..+.|.||+|+||||++++++..+
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 27 EIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 689999999999999999999765
No 490
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.71 E-value=0.0016 Score=61.30 Aligned_cols=25 Identities=24% Similarity=0.505 Sum_probs=23.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhC
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLG 203 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg 203 (544)
..++|.||+|+||||++++++..+.
T Consensus 26 ~~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcC
Confidence 6899999999999999999998763
No 491
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=96.71 E-value=0.078 Score=53.82 Aligned_cols=205 Identities=14% Similarity=0.164 Sum_probs=111.5
Q ss_pred CCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeCCCchh-hhhhh
Q 009072 146 RSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTPTPTI-WQEYM 221 (544)
Q Consensus 146 ~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~el---g~~viei~~s~~~~-~~e~l 221 (544)
..|+.+++...+.+.+.+-.+.... . .-.+||.|.+||||-.+|++.-... ..+++-+|+..... ..|.
T Consensus 201 ~~F~~~v~~S~~mk~~v~qA~k~Am-----l-DAPLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe~~aEs- 273 (511)
T COG3283 201 SGFEQIVAVSPKMKHVVEQAQKLAM-----L-DAPLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPEDAAES- 273 (511)
T ss_pred cchHHHhhccHHHHHHHHHHHHhhc-----c-CCCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCchhHhHH-
Confidence 4577777777666665543333211 1 1469999999999999998754332 46778887654221 1000
Q ss_pred hccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHHHHHhcCCC-------
Q 009072 222 HNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHI------- 294 (544)
Q Consensus 222 ~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~~~~~~~~------- 294 (544)
...|.... ...-.-|++.+ ....+++|||--|+. +++..|+.++..+..
T Consensus 274 --ElFG~apg--~~gk~GffE~A---------------ngGTVlLDeIgEmSp-----~lQaKLLRFL~DGtFRRVGee~ 329 (511)
T COG3283 274 --ELFGHAPG--DEGKKGFFEQA---------------NGGTVLLDEIGEMSP-----RLQAKLLRFLNDGTFRRVGEDH 329 (511)
T ss_pred --HHhcCCCC--CCCccchhhhc---------------cCCeEEeehhhhcCH-----HHHHHHHHHhcCCceeecCCcc
Confidence 00010000 01112234433 234789999988865 344456777665432
Q ss_pred ----cEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCH--H----HHHHHHHHHHHHhCC---CCCHHHH
Q 009072 295 ----PTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITN--G----SIKRTLSKICRQEQY---SLSTEQI 361 (544)
Q Consensus 295 ----piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~--~----~i~~~L~~i~~~e~~---~i~~~~l 361 (544)
.+-+||++.......-. ...+ -..+..|..+..++++|+-. + -..-++++++.+-++ +++++.+
T Consensus 330 Ev~vdVRVIcatq~nL~~lv~-~g~f--ReDLfyRLNVLtl~~PpLRer~~di~pL~e~Fv~q~s~elg~p~pkl~~~~~ 406 (511)
T COG3283 330 EVHVDVRVICATQVNLVELVQ-KGKF--REDLFYRLNVLTLNLPPLRERPQDIMPLAELFVQQFSDELGVPRPKLAADLL 406 (511)
T ss_pred eEEEEEEEEecccccHHHHHh-cCch--HHHHHHHhheeeecCCccccCcccchHHHHHHHHHHHHHhCCCCCccCHHHH
Confidence 35566665321100000 0000 02344443355555555522 1 234456667776665 5678888
Q ss_pred HHHHHH-cCCcHHHHHHHHHHhcc
Q 009072 362 DLVAQA-SGGDIRQAITSLQFSSL 384 (544)
Q Consensus 362 ~~Ia~~-s~GDiR~aIn~Lq~~~~ 384 (544)
..+-.. --|++|+.-|.+-.+|.
T Consensus 407 ~~L~~y~WpGNVRqL~N~iyRA~s 430 (511)
T COG3283 407 TVLTRYAWPGNVRQLKNAIYRALT 430 (511)
T ss_pred HHHHHcCCCccHHHHHHHHHHHHH
Confidence 877654 46999999998866654
No 492
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=96.70 E-value=0.032 Score=51.60 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 009072 179 NVLVITGQAGVGKTATVRQIASH 201 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~e 201 (544)
-.+++.|++|+|||++++.+...
T Consensus 5 ~ki~ivG~~~vGKTsli~~~~~~ 27 (180)
T cd04127 5 IKFLALGDSGVGKTSFLYQYTDN 27 (180)
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999998764
No 493
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.70 E-value=0.018 Score=53.68 Aligned_cols=24 Identities=21% Similarity=0.541 Sum_probs=22.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 009072 179 NVLVITGQAGVGKTATVRQIASHL 202 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~el 202 (544)
..+.|.||+|+||||++++++...
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 29 EKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhccC
Confidence 689999999999999999999875
No 494
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.69 E-value=0.12 Score=54.79 Aligned_cols=35 Identities=29% Similarity=0.347 Sum_probs=28.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeCC
Q 009072 178 TNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTP 212 (544)
Q Consensus 178 ~~~lLL~GPpG~GKTtla~~lA~el---g~~viei~~s 212 (544)
+..++|+||+|+||||++..||..+ |..+.-+.+-
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D 137 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCAD 137 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCc
Confidence 3789999999999999999999876 7777666543
No 495
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.69 E-value=0.019 Score=56.05 Aligned_cols=24 Identities=21% Similarity=0.486 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 009072 179 NVLVITGQAGVGKTATVRQIASHL 202 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~el 202 (544)
..++|.||+|+||||+++.++--+
T Consensus 31 e~~~i~G~nGsGKSTL~~~l~GLl 54 (235)
T COG1122 31 ERVLLIGPNGSGKSTLLKLLNGLL 54 (235)
T ss_pred CEEEEECCCCCCHHHHHHHHcCcC
Confidence 689999999999999999998765
No 496
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=96.69 E-value=0.005 Score=62.83 Aligned_cols=25 Identities=24% Similarity=0.563 Sum_probs=23.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhC
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLG 203 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg 203 (544)
..++++||+|+||||++++++..+.
T Consensus 145 ~~ili~G~tGsGKTTll~al~~~~~ 169 (308)
T TIGR02788 145 KNIIISGGTGSGKTTFLKSLVDEIP 169 (308)
T ss_pred CEEEEECCCCCCHHHHHHHHHccCC
Confidence 6899999999999999999998873
No 497
>PLN02199 shikimate kinase
Probab=96.69 E-value=0.0021 Score=64.25 Aligned_cols=31 Identities=23% Similarity=0.471 Sum_probs=28.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLGARLYEW 209 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg~~viei 209 (544)
+.++|.|++|+||||+++.+|+.+|++++..
T Consensus 103 ~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDt 133 (303)
T PLN02199 103 RSMYLVGMMGSGKTTVGKLMSKVLGYTFFDC 133 (303)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCCEEeh
Confidence 6899999999999999999999999998754
No 498
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=96.68 E-value=0.0062 Score=69.47 Aligned_cols=106 Identities=15% Similarity=0.241 Sum_probs=56.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH---hCCeEEEEeCCCchhhhhhhhccccCcccccchHHHHHHHHHHHhhcCCCCCCC
Q 009072 179 NVLVITGQAGVGKTATVRQIASH---LGARLYEWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIP 255 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~e---lg~~viei~~s~~~~~~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~ 255 (544)
+..+|+|+|||||||+++++... .|+.++- -+|+.+... .+.. ..|... . .+..++.......
T Consensus 369 ~~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~-~ApTg~Aa~-~L~~-~~g~~a-~---Ti~~~~~~~~~~~------- 434 (744)
T TIGR02768 369 DIAVVVGRAGTGKSTMLKAAREAWEAAGYRVIG-AALSGKAAE-GLQA-ESGIES-R---TLASLEYAWANGR------- 434 (744)
T ss_pred CEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEE-EeCcHHHHH-HHHh-ccCCce-e---eHHHHHhhhccCc-------
Confidence 68999999999999999998754 3666654 455543221 1111 122211 1 1222222111000
Q ss_pred CCCCCceEEEEecCCCCCchhHHHHHHHHHHHHHhcCCCcEEEEEccCC
Q 009072 256 GESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPTAVVLTECG 304 (544)
Q Consensus 256 ~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~~~~~~~~piIiI~t~~~ 304 (544)
....+..+|||||+-.++... +. .|........ ..|++++|..
T Consensus 435 ~~~~~~~llIvDEasMv~~~~-~~----~Ll~~~~~~~-~kliLVGD~~ 477 (744)
T TIGR02768 435 DLLSDKDVLVIDEAGMVGSRQ-MA----RVLKEAEEAG-AKVVLVGDPE 477 (744)
T ss_pred ccCCCCcEEEEECcccCCHHH-HH----HHHHHHHhcC-CEEEEECChH
Confidence 001245799999999987542 22 2333222222 3567777643
No 499
>PRK05907 hypothetical protein; Provisional
Probab=96.68 E-value=0.19 Score=51.23 Aligned_cols=163 Identities=13% Similarity=0.098 Sum_probs=100.5
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHHHHHhcCCCc-EEEEEccCCCCCCCCccccc
Q 009072 237 FENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIP-TAVVLTECGKADSVDSTAQS 315 (544)
Q Consensus 237 ~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~~~~~~~~p-iIiI~t~~~~~~~~d~~~~~ 315 (544)
+..+++.+..++.+ ..+.+|++.+.+.+... -.+.|..+++....- +++|.... ...
T Consensus 54 ~~~ii~~aetlPfF--------aerRlV~v~~~~~~~~~-----~~~~L~~Yl~np~~~~~liv~~~~---------~d~ 111 (311)
T PRK05907 54 QQELLSWTEHFGLF--------ASQETIGIYQAEKMSSS-----TQEFLIRYARNPNPHLTLFLFTTK---------QEC 111 (311)
T ss_pred HHHHHHHHhcCCcc--------cCeEEEEEecccccccc-----cHHHHHHHHhCCCCCeEEEEEEec---------ccH
Confidence 45667766655433 22456676665443321 124577777765432 33323210 111
Q ss_pred hHHHHHHHhhcCcee---EEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHc-CCcHHHHHHHHHHhccCCCCCcc
Q 009072 316 FEELQSILVDAGARK---VALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQAS-GGDIRQAITSLQFSSLKQDPMLN 391 (544)
Q Consensus 316 l~~l~~ll~r~~~~~---I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~l~~Ia~~s-~GDiR~aIn~Lq~~~~~~~~~~~ 391 (544)
+..+...+.. +..+ +.|.++...++.+.+...+.++|..+++++++.+++.+ +||+..+.+.|+-+++-......
T Consensus 112 ~kkl~K~i~k-~~~v~~~~e~~~l~e~~L~~Wi~~~~~~~g~~i~~~a~~~L~~~~~~~nL~~l~~EleKL~ly~g~~~~ 190 (311)
T PRK05907 112 FSSLSKKLSS-ALCLSLFGEWFADRDKRIAQLLIQRAKELGISCSLGLASLFVSKFPQTGLFEILSEFQKLLCQMGKKES 190 (311)
T ss_pred HHHHHHHHhh-cceeccccccCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHccCCCHHHHHHHHHHHHHhcCCCCe
Confidence 2223332332 2333 48999999999999999999999999999999999999 69999999999988764221111
Q ss_pred ccccCCCCCCCCccCCCCCCccccccccccchhhHhhhhhhccccC
Q 009072 392 LSLSISKPNFPEEKADGHGGFSIQFGRDETLSLFHALGKFLHNKRE 437 (544)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~rD~~l~lF~algkil~~Kr~ 437 (544)
. + .+.......+-...++|+-+..|+..+..
T Consensus 191 I--------------t-~e~V~~lv~~s~e~nIF~L~dai~~~~~~ 221 (311)
T PRK05907 191 L--------------E-ASDIQSFVVKKEAASLWKLRDALLRRDRV 221 (311)
T ss_pred E--------------C-HHHHHHHhcCcccccHHHHHHHHHccCHH
Confidence 0 0 11122344555667888888888876543
No 500
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=96.67 E-value=0.017 Score=51.84 Aligned_cols=21 Identities=38% Similarity=0.589 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q 009072 181 LVITGQAGVGKTATVRQIASH 201 (544)
Q Consensus 181 lLL~GPpG~GKTtla~~lA~e 201 (544)
+++.||+|+|||++++.+...
T Consensus 2 i~i~G~~~~GKTsli~~l~~~ 22 (160)
T cd00876 2 VVVLGAGGVGKSAITIQFVKG 22 (160)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999998754
Done!