Query 009072
Match_columns 544
No_of_seqs 506 out of 2138
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 18:11:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009072.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009072hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1sxj_A Activator 1 95 kDa subu 100.0 5.8E-37 2E-41 332.5 22.9 335 128-534 18-373 (516)
2 3u61_B DNA polymerase accessor 99.9 1.5E-24 5.1E-29 221.1 20.8 203 133-383 10-220 (324)
3 1sxj_E Activator 1 40 kDa subu 99.9 2.6E-22 8.8E-27 206.9 21.3 308 137-520 2-332 (354)
4 1sxj_C Activator 1 40 kDa subu 99.9 7.6E-22 2.6E-26 202.6 20.3 204 133-385 9-218 (340)
5 1iqp_A RFCS; clamp loader, ext 99.9 4.1E-21 1.4E-25 195.1 20.1 203 135-385 11-218 (327)
6 2chq_A Replication factor C sm 99.9 1.1E-21 3.7E-26 198.7 15.5 202 136-385 4-210 (319)
7 1sxj_D Activator 1 41 kDa subu 99.9 2.1E-21 7.3E-26 199.6 16.9 209 133-384 21-240 (353)
8 1sxj_B Activator 1 37 kDa subu 99.9 6.2E-21 2.1E-25 193.4 18.7 203 135-384 7-214 (323)
9 3pvs_A Replication-associated 99.9 8.4E-21 2.9E-25 201.3 19.6 200 136-386 13-222 (447)
10 2chg_A Replication factor C sm 99.9 4.4E-20 1.5E-24 175.9 22.6 203 136-386 4-211 (226)
11 4b4t_J 26S protease regulatory 99.9 2.3E-20 8E-25 192.6 21.5 214 136-384 135-370 (405)
12 1jr3_A DNA polymerase III subu 99.8 3.9E-20 1.3E-24 191.6 21.5 216 137-384 4-226 (373)
13 1njg_A DNA polymerase III subu 99.8 8.6E-20 3E-24 176.1 22.4 218 136-385 10-234 (250)
14 3pfi_A Holliday junction ATP-d 99.8 9E-20 3.1E-24 186.7 20.4 200 134-383 14-231 (338)
15 4b4t_I 26S protease regulatory 99.8 1.2E-19 4E-24 187.8 20.0 215 135-384 168-404 (437)
16 4b4t_L 26S protease subunit RP 99.8 4.7E-19 1.6E-23 185.6 21.6 215 136-384 168-403 (437)
17 4b4t_M 26S protease regulatory 99.8 2.1E-19 7.3E-24 188.0 18.4 214 136-384 168-403 (434)
18 4b4t_H 26S protease regulatory 99.8 4.3E-19 1.5E-23 185.3 20.3 213 137-384 197-431 (467)
19 3eie_A Vacuolar protein sortin 99.8 5.8E-19 2E-23 179.8 19.5 214 136-383 5-235 (322)
20 3uk6_A RUVB-like 2; hexameric 99.8 9.4E-19 3.2E-23 181.1 21.3 235 136-384 30-308 (368)
21 3vfd_A Spastin; ATPase, microt 99.8 1.1E-18 3.8E-23 182.4 22.0 214 136-383 102-329 (389)
22 3cf2_A TER ATPase, transitiona 99.8 1E-20 3.5E-25 211.4 5.5 278 57-384 391-699 (806)
23 3te6_A Regulatory protein SIR3 99.8 1.1E-18 3.7E-23 175.9 19.3 219 141-385 14-285 (318)
24 2qp9_X Vacuolar protein sortin 99.8 1.1E-18 3.7E-23 180.1 19.4 214 137-384 39-269 (355)
25 3b9p_A CG5977-PA, isoform A; A 99.8 3.8E-18 1.3E-22 171.4 22.5 210 137-380 9-233 (297)
26 4b4t_K 26S protease regulatory 99.8 1.6E-18 5.4E-23 181.3 20.0 215 136-384 159-395 (428)
27 1xwi_A SKD1 protein; VPS4B, AA 99.8 9.1E-18 3.1E-22 170.9 23.8 209 140-382 3-229 (322)
28 3d8b_A Fidgetin-like protein 1 99.8 1.1E-17 3.9E-22 172.6 20.9 207 139-379 74-294 (357)
29 1hqc_A RUVB; extended AAA-ATPa 99.8 1.5E-17 5E-22 169.0 20.9 198 138-384 1-216 (324)
30 2c9o_A RUVB-like 1; hexameric 99.8 2.8E-17 9.5E-22 175.3 23.5 114 262-383 297-414 (456)
31 2zan_A Vacuolar protein sortin 99.8 1.3E-17 4.5E-22 177.0 19.3 214 137-384 122-353 (444)
32 3h4m_A Proteasome-activating n 99.7 1.3E-16 4.4E-21 159.2 18.6 211 140-384 8-239 (285)
33 2qz4_A Paraplegin; AAA+, SPG7, 99.7 7.9E-16 2.7E-20 151.2 23.0 204 145-383 2-229 (262)
34 1fnn_A CDC6P, cell division co 99.7 3.3E-16 1.1E-20 162.7 21.3 219 136-384 7-252 (389)
35 3syl_A Protein CBBX; photosynt 99.7 2.4E-16 8.3E-21 158.9 19.5 203 150-384 32-260 (309)
36 2qby_B CDC6 homolog 3, cell di 99.7 6.1E-17 2.1E-21 168.2 15.2 218 134-384 8-250 (384)
37 3bos_A Putative DNA replicatio 99.7 3.2E-16 1.1E-20 151.4 18.7 200 136-384 14-222 (242)
38 1in4_A RUVB, holliday junction 99.7 6.4E-16 2.2E-20 158.1 21.7 197 136-382 12-226 (334)
39 2v1u_A Cell division control p 99.7 1.3E-16 4.3E-21 165.5 16.1 223 137-384 10-254 (387)
40 1lv7_A FTSH; alpha/beta domain 99.7 5E-16 1.7E-20 152.6 19.4 207 138-380 1-226 (257)
41 1a5t_A Delta prime, HOLB; zinc 99.7 7.2E-16 2.5E-20 157.7 18.6 195 152-383 5-209 (334)
42 3cf0_A Transitional endoplasmi 99.7 9.3E-17 3.2E-21 161.9 11.5 209 140-384 6-237 (301)
43 1d2n_A N-ethylmaleimide-sensit 99.7 1.8E-15 6.1E-20 150.0 16.9 194 151-384 35-247 (272)
44 3cf2_A TER ATPase, transitiona 99.6 4.3E-16 1.5E-20 174.2 13.0 201 143-378 198-417 (806)
45 1ofh_A ATP-dependent HSL prote 99.6 4.3E-15 1.5E-19 149.4 19.0 210 150-383 16-270 (310)
46 2gno_A DNA polymerase III, gam 99.6 2.2E-15 7.5E-20 151.8 14.7 169 153-381 1-175 (305)
47 2qby_A CDC6 homolog 1, cell di 99.6 2.6E-15 8.8E-20 155.4 15.2 223 136-384 10-250 (386)
48 2ce7_A Cell division protein F 99.6 6E-15 2.1E-19 156.7 18.0 213 137-384 3-237 (476)
49 1l8q_A Chromosomal replication 99.6 9.3E-15 3.2E-19 148.6 18.5 199 146-385 8-214 (324)
50 3hu3_A Transitional endoplasmi 99.6 2.7E-15 9.2E-20 160.5 13.0 205 141-379 196-414 (489)
51 2z4s_A Chromosomal replication 99.6 2.4E-14 8.4E-19 151.6 18.8 203 143-384 98-311 (440)
52 1qvr_A CLPB protein; coiled co 99.6 9.5E-15 3.2E-19 167.3 13.5 209 136-383 157-389 (854)
53 3pxg_A Negative regulator of g 99.6 2.7E-15 9.4E-20 160.2 8.2 199 134-384 165-383 (468)
54 1jbk_A CLPB protein; beta barr 99.6 8.2E-15 2.8E-19 135.8 9.4 171 137-345 10-194 (195)
55 2r62_A Cell division protease 99.5 2E-16 6.8E-21 156.4 -3.5 209 141-385 3-235 (268)
56 3t15_A Ribulose bisphosphate c 99.5 2E-13 6.9E-18 136.8 16.9 168 174-373 32-221 (293)
57 2r44_A Uncharacterized protein 99.5 1.9E-13 6.4E-18 139.3 16.8 206 138-383 16-274 (331)
58 2dhr_A FTSH; AAA+ protein, hex 99.5 1.3E-13 4.5E-18 147.2 15.1 214 136-385 19-253 (499)
59 2x8a_A Nuclear valosin-contain 99.5 2.5E-13 8.7E-18 134.7 15.1 207 143-383 4-233 (274)
60 4fcw_A Chaperone protein CLPB; 99.5 6.4E-13 2.2E-17 133.8 18.1 214 149-384 17-276 (311)
61 1ixz_A ATP-dependent metallopr 99.5 2.5E-13 8.6E-18 133.0 14.4 210 140-384 7-237 (254)
62 1r6b_X CLPA protein; AAA+, N-t 99.5 1.4E-13 4.9E-18 155.8 14.1 211 133-382 170-405 (758)
63 2p65_A Hypothetical protein PF 99.5 3.1E-14 1.1E-18 131.5 6.4 163 136-337 9-187 (187)
64 3m6a_A ATP-dependent protease 99.4 5.9E-13 2E-17 144.6 15.3 215 139-383 71-312 (543)
65 1w5s_A Origin recognition comp 99.4 1.9E-12 6.4E-17 135.4 18.3 218 140-383 16-270 (412)
66 3pxi_A Negative regulator of g 99.4 1.2E-13 4.3E-18 156.2 9.8 198 134-383 165-382 (758)
67 1iy2_A ATP-dependent metallopr 99.4 1.7E-12 5.7E-17 129.0 16.6 209 140-383 31-260 (278)
68 2bjv_A PSP operon transcriptio 99.4 2.9E-12 9.8E-17 126.2 18.0 207 147-384 4-238 (265)
69 1um8_A ATP-dependent CLP prote 99.4 5.9E-13 2E-17 138.2 13.4 217 150-384 22-337 (376)
70 1ypw_A Transitional endoplasmi 99.4 4.4E-16 1.5E-20 176.5 -13.2 277 58-385 392-700 (806)
71 1ypw_A Transitional endoplasmi 99.4 3.1E-12 1.1E-16 145.1 14.9 202 141-375 196-410 (806)
72 1r6b_X CLPA protein; AAA+, N-t 99.4 7.5E-12 2.6E-16 141.6 17.1 214 150-384 459-713 (758)
73 1ojl_A Transcriptional regulat 99.4 1.8E-11 6.1E-16 123.3 17.7 206 149-385 2-234 (304)
74 1g8p_A Magnesium-chelatase 38 99.4 2.1E-11 7E-16 124.7 18.5 217 142-384 17-300 (350)
75 3hws_A ATP-dependent CLP prote 99.3 3.6E-12 1.2E-16 131.6 12.6 216 151-384 17-320 (363)
76 1jr3_D DNA polymerase III, del 99.3 1.6E-11 5.4E-16 125.7 16.5 165 179-384 19-190 (343)
77 3pxi_A Negative regulator of g 99.3 3.4E-11 1.2E-15 136.2 17.5 201 149-383 491-721 (758)
78 1g41_A Heat shock protein HSLU 99.3 6E-11 2E-15 124.4 17.3 116 261-383 251-404 (444)
79 1qvr_A CLPB protein; coiled co 99.3 6.3E-11 2.2E-15 135.6 17.1 214 149-384 558-817 (854)
80 2qen_A Walker-type ATPase; unk 99.2 5.6E-10 1.9E-14 113.6 19.9 202 144-375 7-242 (350)
81 3n70_A Transport activator; si 99.1 1.9E-10 6.5E-15 102.6 11.2 57 150-213 2-61 (145)
82 3ec2_A DNA replication protein 99.1 1.3E-10 4.5E-15 107.3 6.7 69 141-210 2-74 (180)
83 3nbx_X ATPase RAVA; AAA+ ATPas 99.0 3.2E-09 1.1E-13 113.5 17.0 192 150-381 23-261 (500)
84 3co5_A Putative two-component 99.0 8E-10 2.8E-14 98.3 10.3 57 150-213 5-61 (143)
85 2fna_A Conserved hypothetical 99.0 5.3E-09 1.8E-13 106.5 16.6 199 144-379 8-250 (357)
86 1u0j_A DNA replication protein 99.0 2.7E-09 9.4E-14 104.0 12.8 42 160-204 88-130 (267)
87 3k1j_A LON protease, ATP-depen 98.9 3.6E-09 1.2E-13 116.5 12.9 54 140-203 32-85 (604)
88 2w58_A DNAI, primosome compone 98.9 1.4E-09 4.7E-14 102.2 7.5 69 140-212 16-91 (202)
89 1tue_A Replication protein E1; 98.9 1E-08 3.5E-13 95.7 11.6 45 158-209 45-89 (212)
90 2kjq_A DNAA-related protein; s 98.7 1.5E-07 5E-12 84.2 12.9 85 179-303 37-124 (149)
91 2qgz_A Helicase loader, putati 98.7 1.2E-08 4.3E-13 102.6 5.9 68 140-212 115-190 (308)
92 4akg_A Glutathione S-transfera 98.6 2E-07 7E-12 115.9 13.0 185 137-351 1225-1433(2695)
93 3upu_A ATP-dependent DNA helic 98.6 8.9E-08 3E-12 101.8 8.1 61 133-202 8-69 (459)
94 3dzd_A Transcriptional regulat 98.5 1.2E-06 4.2E-11 90.2 15.4 207 149-385 129-360 (368)
95 3f9v_A Minichromosome maintena 98.5 4E-08 1.4E-12 107.6 3.0 28 180-207 329-356 (595)
96 1ny5_A Transcriptional regulat 98.5 5.8E-06 2E-10 85.7 18.8 207 149-385 137-369 (387)
97 1ye8_A Protein THEP1, hypothet 98.4 1.8E-06 6.3E-11 79.4 12.7 77 259-347 98-174 (178)
98 2cvh_A DNA repair and recombin 98.2 2.3E-05 7.8E-10 73.8 13.8 116 174-300 16-153 (220)
99 2vhj_A Ntpase P4, P4; non- hyd 98.1 4.7E-06 1.6E-10 83.2 8.5 33 174-206 119-151 (331)
100 1z6t_A APAF-1, apoptotic prote 98.1 4.9E-05 1.7E-09 83.0 17.3 51 144-200 119-169 (591)
101 3foz_A TRNA delta(2)-isopenten 98.0 2.2E-05 7.7E-10 77.9 10.2 160 179-388 11-181 (316)
102 4akg_A Glutathione S-transfera 98.0 0.00014 4.8E-09 90.9 18.8 129 179-346 646-790 (2695)
103 3vkg_A Dynein heavy chain, cyt 97.9 4.2E-05 1.5E-09 96.2 13.5 175 147-351 1279-1471(3245)
104 2w0m_A SSO2452; RECA, SSPF, un 97.9 7.2E-05 2.5E-09 70.8 12.2 39 175-213 20-61 (235)
105 3crm_A TRNA delta(2)-isopenten 97.9 1.6E-05 5.6E-10 79.7 7.6 161 179-389 6-177 (323)
106 2i3b_A HCR-ntpase, human cance 97.9 4.1E-05 1.4E-09 71.0 9.3 78 259-347 104-182 (189)
107 3exa_A TRNA delta(2)-isopenten 97.9 1.8E-05 6.1E-10 78.8 6.9 160 179-389 4-176 (322)
108 2a5y_B CED-4; apoptosis; HET: 97.8 0.00016 5.4E-09 78.4 14.7 44 152-200 131-174 (549)
109 3cmw_A Protein RECA, recombina 97.8 4.8E-05 1.6E-09 91.1 10.8 88 175-275 1079-1175(1706)
110 2orw_A Thymidine kinase; TMTK, 97.8 3.2E-05 1.1E-09 71.4 7.3 32 179-210 4-38 (184)
111 3hr8_A Protein RECA; alpha and 97.8 0.00024 8.2E-09 72.3 13.8 40 174-213 57-99 (356)
112 3sfz_A APAF-1, apoptotic pepti 97.8 0.00021 7.2E-09 84.5 15.2 189 144-373 119-322 (1249)
113 1n0w_A DNA repair protein RAD5 97.7 0.00011 3.8E-09 70.1 9.9 40 174-213 20-68 (243)
114 2b8t_A Thymidine kinase; deoxy 97.7 0.00016 5.5E-09 68.7 10.2 34 179-212 13-49 (223)
115 3trf_A Shikimate kinase, SK; a 97.6 4.8E-05 1.6E-09 69.7 5.0 31 179-209 6-36 (185)
116 2zr9_A Protein RECA, recombina 97.6 0.00044 1.5E-08 70.4 12.3 40 174-213 57-99 (349)
117 1qhx_A CPT, protein (chloramph 97.6 6E-05 2.1E-09 68.5 5.2 31 179-209 4-34 (178)
118 1xp8_A RECA protein, recombina 97.6 0.00076 2.6E-08 69.0 13.8 40 174-213 70-112 (366)
119 2rhm_A Putative kinase; P-loop 97.5 6.5E-05 2.2E-09 69.1 5.1 31 178-208 5-35 (193)
120 1u94_A RECA protein, recombina 97.5 0.00058 2E-08 69.7 12.3 40 174-213 59-101 (356)
121 1cr0_A DNA primase/helicase; R 97.5 0.00073 2.5E-08 66.9 12.7 39 174-212 31-73 (296)
122 3kb2_A SPBC2 prophage-derived 97.5 7.3E-05 2.5E-09 67.3 4.8 31 179-209 2-32 (173)
123 2z43_A DNA repair and recombin 97.5 0.00022 7.4E-09 71.9 8.7 40 174-213 103-151 (324)
124 3vaa_A Shikimate kinase, SK; s 97.5 8E-05 2.7E-09 69.4 5.0 31 179-209 26-56 (199)
125 1v5w_A DMC1, meiotic recombina 97.5 0.0003 1E-08 71.5 9.7 40 174-213 118-166 (343)
126 3io5_A Recombination and repai 97.5 0.0015 5.3E-08 64.9 14.1 39 174-213 25-68 (333)
127 2dr3_A UPF0273 protein PH0284; 97.5 0.0011 3.8E-08 63.2 12.7 40 174-213 19-61 (247)
128 1gvn_B Zeta; postsegregational 97.4 0.0002 7E-09 70.8 7.6 56 155-210 10-65 (287)
129 1pzn_A RAD51, DNA repair and r 97.4 0.00064 2.2E-08 69.2 11.5 40 174-213 127-175 (349)
130 1via_A Shikimate kinase; struc 97.4 0.0001 3.4E-09 67.0 4.6 30 179-208 5-34 (175)
131 2r6a_A DNAB helicase, replicat 97.4 0.00083 2.8E-08 70.9 12.2 40 174-213 199-242 (454)
132 2fz4_A DNA repair protein RAD2 97.4 0.0012 4.2E-08 63.2 12.3 33 179-211 109-141 (237)
133 1zuh_A Shikimate kinase; alpha 97.4 0.00012 4E-09 66.1 4.8 31 179-209 8-38 (168)
134 1kag_A SKI, shikimate kinase I 97.4 0.00011 3.8E-09 66.4 4.7 30 179-208 5-34 (173)
135 2iyv_A Shikimate kinase, SK; t 97.4 0.0001 3.6E-09 67.4 4.5 31 179-209 3-33 (184)
136 3iij_A Coilin-interacting nucl 97.4 0.00012 4.2E-09 66.7 4.7 30 179-208 12-41 (180)
137 3dm5_A SRP54, signal recogniti 97.4 0.0099 3.4E-07 62.0 19.4 183 178-383 100-310 (443)
138 3jvv_A Twitching mobility prot 97.4 0.0013 4.3E-08 67.1 12.4 34 179-212 124-161 (356)
139 2r8r_A Sensor protein; KDPD, P 97.4 0.00037 1.3E-08 66.0 7.8 33 179-211 7-42 (228)
140 3lw7_A Adenylate kinase relate 97.4 0.00014 4.8E-09 65.3 4.8 30 179-209 2-31 (179)
141 2q6t_A DNAB replication FORK h 97.4 0.0014 4.7E-08 69.0 13.0 40 174-213 196-239 (444)
142 3cmu_A Protein RECA, recombina 97.3 0.00057 2E-08 83.0 10.8 40 174-213 1423-1465(2050)
143 1y63_A LMAJ004144AAA protein; 97.3 0.00016 5.5E-09 66.4 4.8 30 179-208 11-41 (184)
144 1e6c_A Shikimate kinase; phosp 97.3 0.00016 5.4E-09 65.3 4.6 30 179-208 3-32 (173)
145 2ze6_A Isopentenyl transferase 97.3 0.00015 5E-09 70.5 4.6 32 179-210 2-33 (253)
146 2r2a_A Uncharacterized protein 97.3 0.00012 4E-09 68.5 3.6 23 179-201 6-28 (199)
147 3be4_A Adenylate kinase; malar 97.3 0.00018 6E-09 68.0 4.8 31 179-209 6-36 (217)
148 3cm0_A Adenylate kinase; ATP-b 97.3 0.00016 5.4E-09 66.2 4.4 30 179-208 5-34 (186)
149 2cdn_A Adenylate kinase; phosp 97.3 0.00022 7.4E-09 66.3 5.4 31 179-209 21-51 (201)
150 2c95_A Adenylate kinase 1; tra 97.3 0.00019 6.5E-09 66.1 5.0 31 179-209 10-40 (196)
151 1tev_A UMP-CMP kinase; ploop, 97.3 0.00019 6.5E-09 65.9 4.9 30 179-208 4-33 (196)
152 1ly1_A Polynucleotide kinase; 97.3 0.00013 4.4E-09 66.2 3.7 30 179-208 3-33 (181)
153 3t61_A Gluconokinase; PSI-biol 97.3 0.00018 6E-09 67.0 4.6 30 179-208 19-48 (202)
154 1kht_A Adenylate kinase; phosp 97.3 0.00017 5.8E-09 66.1 4.3 29 179-207 4-37 (192)
155 3bh0_A DNAB-like replicative h 97.3 0.0025 8.4E-08 63.8 13.1 39 174-212 64-105 (315)
156 1nlf_A Regulatory protein REPA 97.3 0.00092 3.1E-08 65.6 9.7 29 174-202 26-54 (279)
157 2vli_A Antibiotic resistance p 97.2 0.00014 4.7E-09 66.4 3.4 29 179-207 6-34 (183)
158 2bwj_A Adenylate kinase 5; pho 97.2 0.00022 7.5E-09 65.9 4.8 31 179-209 13-43 (199)
159 2p5t_B PEZT; postsegregational 97.2 0.00035 1.2E-08 67.6 6.5 34 178-211 32-65 (253)
160 3umf_A Adenylate kinase; rossm 97.2 0.0002 7E-09 67.7 4.6 30 178-207 29-58 (217)
161 2i1q_A DNA repair and recombin 97.2 0.00082 2.8E-08 67.4 9.2 28 174-201 94-121 (322)
162 1qf9_A UMP/CMP kinase, protein 97.2 0.00023 7.8E-09 65.3 4.7 31 179-209 7-37 (194)
163 4a74_A DNA repair and recombin 97.2 0.0011 3.7E-08 62.5 9.6 40 174-213 21-69 (231)
164 1aky_A Adenylate kinase; ATP:A 97.2 0.00027 9.4E-09 66.7 5.1 31 179-209 5-35 (220)
165 1vt4_I APAF-1 related killer D 97.2 0.01 3.5E-07 67.9 18.5 43 152-201 131-173 (1221)
166 1knq_A Gluconate kinase; ALFA/ 97.2 0.00031 1E-08 63.7 5.2 30 179-208 9-38 (175)
167 1xx6_A Thymidine kinase; NESG, 97.2 0.0011 3.9E-08 61.3 9.1 32 179-210 9-43 (191)
168 3dl0_A Adenylate kinase; phosp 97.2 0.00026 8.8E-09 66.6 4.7 30 180-209 2-31 (216)
169 3fb4_A Adenylate kinase; psych 97.2 0.00027 9.2E-09 66.4 4.8 30 180-209 2-31 (216)
170 4eun_A Thermoresistant glucoki 97.2 0.00031 1.1E-08 65.3 5.1 30 179-208 30-59 (200)
171 2pt5_A Shikimate kinase, SK; a 97.2 0.00029 1E-08 63.2 4.7 30 180-209 2-31 (168)
172 2ehv_A Hypothetical protein PH 97.2 0.0013 4.4E-08 62.9 9.6 39 175-213 27-69 (251)
173 2pez_A Bifunctional 3'-phospho 97.2 0.00037 1.2E-08 63.5 5.2 33 178-210 5-40 (179)
174 1zd8_A GTP:AMP phosphotransfer 97.2 0.00029 1E-08 66.9 4.7 31 179-209 8-38 (227)
175 3lda_A DNA repair protein RAD5 97.2 0.0015 5.2E-08 67.5 10.5 40 174-213 174-222 (400)
176 1ukz_A Uridylate kinase; trans 97.2 0.00031 1.1E-08 65.3 4.8 31 179-209 16-46 (203)
177 1ex7_A Guanylate kinase; subst 97.1 0.0051 1.7E-07 56.6 12.8 25 179-203 2-26 (186)
178 3sr0_A Adenylate kinase; phosp 97.1 0.00034 1.2E-08 65.6 4.9 29 180-208 2-30 (206)
179 3tlx_A Adenylate kinase 2; str 97.1 0.00039 1.3E-08 67.0 5.0 31 179-209 30-60 (243)
180 4a1f_A DNAB helicase, replicat 97.1 0.0039 1.3E-07 62.9 12.5 118 174-301 42-204 (338)
181 3kl4_A SRP54, signal recogniti 97.1 0.015 5E-07 60.7 17.2 36 178-213 97-135 (433)
182 1ak2_A Adenylate kinase isoenz 97.1 0.00042 1.4E-08 66.1 5.0 31 179-209 17-47 (233)
183 1zp6_A Hypothetical protein AT 97.1 0.00033 1.1E-08 64.3 4.1 34 178-211 9-42 (191)
184 1cke_A CK, MSSA, protein (cyti 97.1 0.00044 1.5E-08 65.3 5.0 30 179-208 6-35 (227)
185 2pbr_A DTMP kinase, thymidylat 97.1 0.00068 2.3E-08 62.1 6.2 34 180-213 2-38 (195)
186 2z0h_A DTMP kinase, thymidylat 97.1 0.00067 2.3E-08 62.4 6.0 35 180-214 2-39 (197)
187 1vma_A Cell division protein F 97.0 0.01 3.6E-07 58.9 14.8 34 178-211 104-140 (306)
188 1zak_A Adenylate kinase; ATP:A 97.0 0.00033 1.1E-08 66.2 3.7 29 179-207 6-34 (222)
189 1e4v_A Adenylate kinase; trans 97.0 0.00046 1.6E-08 64.8 4.6 30 180-209 2-31 (214)
190 3e1s_A Exodeoxyribonuclease V, 97.0 0.00062 2.1E-08 74.0 6.2 35 179-214 205-242 (574)
191 2v54_A DTMP kinase, thymidylat 97.0 0.00049 1.7E-08 63.8 4.6 35 179-213 5-40 (204)
192 2jaq_A Deoxyguanosine kinase; 97.0 0.00052 1.8E-08 63.5 4.7 28 180-207 2-29 (205)
193 3f8t_A Predicted ATPase involv 97.0 0.0028 9.4E-08 66.3 10.4 101 261-367 301-426 (506)
194 3bgw_A DNAB-like replicative h 97.0 0.0061 2.1E-07 64.0 13.3 39 174-212 193-234 (444)
195 1nks_A Adenylate kinase; therm 97.0 0.00033 1.1E-08 64.2 3.1 25 179-203 2-26 (194)
196 3cmw_A Protein RECA, recombina 97.0 0.0037 1.3E-07 75.1 12.7 40 174-213 728-770 (1706)
197 2xb4_A Adenylate kinase; ATP-b 97.0 0.00059 2E-08 64.7 4.8 30 180-209 2-31 (223)
198 2plr_A DTMP kinase, probable t 96.9 0.00074 2.5E-08 62.8 5.4 34 179-212 5-40 (213)
199 3r20_A Cytidylate kinase; stru 96.9 0.00068 2.3E-08 64.8 5.0 30 179-208 10-39 (233)
200 1q57_A DNA primase/helicase; d 96.9 0.0061 2.1E-07 65.1 13.0 40 174-213 238-281 (503)
201 2if2_A Dephospho-COA kinase; a 96.9 0.00067 2.3E-08 63.0 4.6 30 179-209 2-31 (204)
202 1w4r_A Thymidine kinase; type 96.9 0.0012 4E-08 61.1 6.1 35 178-212 20-57 (195)
203 3t5g_A GTP-binding protein RHE 96.9 0.018 6.2E-07 51.6 14.2 23 179-201 7-29 (181)
204 3ake_A Cytidylate kinase; CMP 96.9 0.00076 2.6E-08 62.6 4.9 31 179-209 3-33 (208)
205 3nwj_A ATSK2; P loop, shikimat 96.9 0.00069 2.3E-08 65.6 4.7 31 179-209 49-79 (250)
206 3uie_A Adenylyl-sulfate kinase 96.9 0.00091 3.1E-08 62.1 5.3 24 179-202 26-49 (200)
207 3eph_A TRNA isopentenyltransfe 96.9 0.0016 5.6E-08 66.9 7.5 30 179-208 3-32 (409)
208 2ga8_A Hypothetical 39.9 kDa p 96.9 0.00058 2E-08 69.1 4.1 53 155-211 5-57 (359)
209 1kgd_A CASK, peripheral plasma 96.9 0.00066 2.3E-08 62.0 4.1 26 178-203 5-30 (180)
210 3vkg_A Dynein heavy chain, cyt 96.8 0.014 4.9E-07 73.9 17.0 143 177-350 1645-1827(3245)
211 2bbw_A Adenylate kinase 4, AK4 96.8 0.00075 2.6E-08 64.9 4.5 29 179-207 28-56 (246)
212 1u8z_A RAS-related protein RAL 96.8 0.016 5.6E-07 50.8 13.1 23 179-201 5-27 (168)
213 1kao_A RAP2A; GTP-binding prot 96.8 0.022 7.4E-07 49.9 13.9 23 179-201 4-26 (167)
214 3a4m_A L-seryl-tRNA(SEC) kinas 96.8 0.00079 2.7E-08 65.5 4.5 32 179-210 5-39 (260)
215 3clv_A RAB5 protein, putative; 96.8 0.023 7.8E-07 51.6 14.4 23 179-201 8-30 (208)
216 2grj_A Dephospho-COA kinase; T 96.8 0.00089 3E-08 62.1 4.6 31 179-209 13-43 (192)
217 1jjv_A Dephospho-COA kinase; P 96.8 0.00068 2.3E-08 63.1 3.9 29 179-208 3-31 (206)
218 2zts_A Putative uncharacterize 96.8 0.0054 1.8E-07 58.4 10.3 39 174-212 26-68 (251)
219 1svm_A Large T antigen; AAA+ f 96.8 0.0016 5.4E-08 66.9 6.7 37 174-210 165-201 (377)
220 2a9k_A RAS-related protein RAL 96.8 0.015 5.2E-07 52.1 12.7 23 179-201 19-41 (187)
221 4eaq_A DTMP kinase, thymidylat 96.8 0.0058 2E-07 58.1 10.2 37 179-215 27-65 (229)
222 4e22_A Cytidylate kinase; P-lo 96.8 0.001 3.5E-08 64.3 4.9 29 179-207 28-56 (252)
223 2px0_A Flagellar biosynthesis 96.7 0.028 9.4E-07 55.6 15.1 35 178-212 105-143 (296)
224 2efe_B Small GTP-binding prote 96.7 0.03 1E-06 49.9 14.3 23 179-201 13-35 (181)
225 3a8t_A Adenylate isopentenyltr 96.7 0.0007 2.4E-08 68.1 3.4 33 179-211 41-73 (339)
226 4dsu_A GTPase KRAS, isoform 2B 96.7 0.019 6.5E-07 51.6 12.8 24 179-202 5-28 (189)
227 2ce2_X GTPase HRAS; signaling 96.7 0.031 1.1E-06 48.7 13.7 24 179-202 4-27 (166)
228 2bov_A RAla, RAS-related prote 96.7 0.022 7.6E-07 52.1 13.2 23 179-201 15-37 (206)
229 2bdt_A BH3686; alpha-beta prot 96.7 0.0012 4E-08 60.6 4.3 27 179-205 3-29 (189)
230 2qor_A Guanylate kinase; phosp 96.7 0.00093 3.2E-08 62.3 3.6 27 177-203 11-37 (204)
231 3cmu_A Protein RECA, recombina 96.7 0.01 3.5E-07 72.3 13.3 40 174-213 379-421 (2050)
232 1rz3_A Hypothetical protein rb 96.7 0.0028 9.7E-08 58.8 6.9 49 156-209 5-56 (201)
233 3oes_A GTPase rhebl1; small GT 96.7 0.025 8.4E-07 51.9 13.4 23 179-201 25-47 (201)
234 2wwf_A Thymidilate kinase, put 96.7 0.00083 2.8E-08 62.6 3.2 25 179-203 11-35 (212)
235 1uf9_A TT1252 protein; P-loop, 96.6 0.0012 4.1E-08 61.0 4.2 29 179-208 9-37 (203)
236 1vht_A Dephospho-COA kinase; s 96.6 0.0014 4.9E-08 61.5 4.7 30 179-209 5-34 (218)
237 3con_A GTPase NRAS; structural 96.6 0.032 1.1E-06 50.4 13.4 23 179-201 22-44 (190)
238 1q3t_A Cytidylate kinase; nucl 96.6 0.0019 6.5E-08 61.6 5.3 30 179-208 17-46 (236)
239 3b6e_A Interferon-induced heli 96.6 0.0068 2.3E-07 56.2 9.0 24 179-202 49-72 (216)
240 3bc1_A RAS-related protein RAB 96.6 0.026 8.7E-07 50.9 12.7 23 179-201 12-34 (195)
241 2j9r_A Thymidine kinase; TK1, 96.6 0.0048 1.6E-07 57.8 7.7 34 179-212 29-65 (214)
242 3lxx_A GTPase IMAP family memb 96.6 0.056 1.9E-06 51.2 15.5 24 179-202 30-53 (239)
243 1nn5_A Similar to deoxythymidy 96.6 0.0011 3.6E-08 62.0 3.2 34 179-212 10-46 (215)
244 3fdi_A Uncharacterized protein 96.5 0.0017 5.9E-08 60.5 4.5 29 179-207 7-35 (201)
245 2h92_A Cytidylate kinase; ross 96.5 0.0018 6.3E-08 60.7 4.7 30 179-208 4-33 (219)
246 3tau_A Guanylate kinase, GMP k 96.5 0.0013 4.6E-08 61.5 3.7 25 179-203 9-33 (208)
247 1ltq_A Polynucleotide kinase; 96.5 0.0015 5.1E-08 64.6 4.0 29 179-207 3-32 (301)
248 3kkq_A RAS-related protein M-R 96.5 0.031 1E-06 50.1 12.6 23 179-201 19-41 (183)
249 2qt1_A Nicotinamide riboside k 96.5 0.0014 4.8E-08 61.0 3.5 30 179-208 22-52 (207)
250 3d3q_A TRNA delta(2)-isopenten 96.5 0.0017 5.9E-08 65.4 4.3 31 179-209 8-38 (340)
251 2fg5_A RAB-22B, RAS-related pr 96.5 0.029 9.9E-07 51.0 12.3 23 179-201 24-46 (192)
252 1uj2_A Uridine-cytidine kinase 96.4 0.002 6.8E-08 62.2 4.4 27 179-205 23-49 (252)
253 2f6r_A COA synthase, bifunctio 96.4 0.0021 7E-08 63.3 4.5 30 179-209 76-105 (281)
254 2j41_A Guanylate kinase; GMP, 96.4 0.0017 5.7E-08 60.2 3.7 24 179-202 7-30 (207)
255 3a00_A Guanylate kinase, GMP k 96.4 0.0016 5.5E-08 59.7 3.5 25 179-203 2-26 (186)
256 3tr0_A Guanylate kinase, GMP k 96.4 0.0019 6.5E-08 59.8 4.0 25 179-203 8-32 (205)
257 3zvl_A Bifunctional polynucleo 96.4 0.0014 4.7E-08 68.4 3.2 29 179-207 259-287 (416)
258 1c1y_A RAS-related protein RAP 96.4 0.038 1.3E-06 48.4 12.4 23 179-201 4-26 (167)
259 2yvu_A Probable adenylyl-sulfa 96.4 0.0019 6.6E-08 59.0 3.8 32 178-209 13-47 (186)
260 3q85_A GTP-binding protein REM 96.4 0.034 1.2E-06 49.0 12.0 21 180-200 4-24 (169)
261 1zd9_A ADP-ribosylation factor 96.4 0.027 9.2E-07 51.1 11.5 23 179-201 23-45 (188)
262 3q72_A GTP-binding protein RAD 96.4 0.014 4.6E-07 51.5 9.2 21 180-200 4-24 (166)
263 3c5c_A RAS-like protein 12; GD 96.4 0.027 9.3E-07 51.1 11.5 23 179-201 22-44 (187)
264 1z06_A RAS-related protein RAB 96.3 0.035 1.2E-06 50.2 12.0 23 179-201 21-43 (189)
265 1r2q_A RAS-related protein RAB 96.3 0.054 1.9E-06 47.5 12.9 23 179-201 7-29 (170)
266 2h57_A ADP-ribosylation factor 96.3 0.067 2.3E-06 48.3 13.8 24 179-202 22-45 (190)
267 2hup_A RAS-related protein RAB 96.3 0.066 2.2E-06 49.1 13.8 23 179-201 30-52 (201)
268 3ihw_A Centg3; RAS, centaurin, 96.3 0.032 1.1E-06 50.5 11.5 23 179-201 21-43 (184)
269 3llm_A ATP-dependent RNA helic 96.3 0.021 7E-07 54.2 10.6 23 179-201 77-99 (235)
270 1nrj_B SR-beta, signal recogni 96.3 0.02 6.7E-07 53.2 10.3 24 179-202 13-36 (218)
271 3ney_A 55 kDa erythrocyte memb 96.3 0.0026 9E-08 59.0 4.0 26 178-203 19-44 (197)
272 1odf_A YGR205W, hypothetical 3 96.3 0.0059 2E-07 60.3 6.8 25 179-203 32-56 (290)
273 3vkw_A Replicase large subunit 96.3 0.0029 9.9E-08 65.9 4.7 25 177-201 160-184 (446)
274 1ls1_A Signal recognition part 96.3 0.049 1.7E-06 53.8 13.5 35 178-212 98-135 (295)
275 2fn4_A P23, RAS-related protei 96.2 0.039 1.3E-06 49.0 11.7 23 179-201 10-32 (181)
276 1zu4_A FTSY; GTPase, signal re 96.2 0.065 2.2E-06 53.5 14.2 35 178-212 105-142 (320)
277 1lvg_A Guanylate kinase, GMP k 96.2 0.0024 8.2E-08 59.3 3.4 25 179-203 5-29 (198)
278 3asz_A Uridine kinase; cytidin 96.2 0.0026 9E-08 59.2 3.7 29 179-207 7-37 (211)
279 1m7g_A Adenylylsulfate kinase; 96.2 0.0026 9E-08 59.5 3.7 32 179-210 26-61 (211)
280 1wms_A RAB-9, RAB9, RAS-relate 96.2 0.12 4.1E-06 45.7 14.8 23 179-201 8-30 (177)
281 4b3f_X DNA-binding protein smu 96.2 0.0058 2E-07 67.4 7.0 41 152-202 189-229 (646)
282 3hdt_A Putative kinase; struct 96.2 0.0036 1.2E-07 59.4 4.4 30 179-208 15-44 (223)
283 1g5t_A COB(I)alamin adenosyltr 96.2 0.05 1.7E-06 50.1 12.0 31 179-209 29-62 (196)
284 3dz8_A RAS-related protein RAB 96.2 0.043 1.5E-06 49.7 11.7 24 179-202 24-47 (191)
285 1zbd_A Rabphilin-3A; G protein 96.1 0.048 1.6E-06 49.9 12.0 23 179-201 9-31 (203)
286 1upt_A ARL1, ADP-ribosylation 96.1 0.092 3.2E-06 46.1 13.5 23 179-201 8-30 (171)
287 2oil_A CATX-8, RAS-related pro 96.1 0.054 1.8E-06 49.1 12.2 23 179-201 26-48 (193)
288 1p9r_A General secretion pathw 96.1 0.0058 2E-07 63.6 6.0 58 145-211 143-203 (418)
289 1z2a_A RAS-related protein RAB 96.1 0.036 1.2E-06 48.6 10.5 23 179-201 6-28 (168)
290 2y8e_A RAB-protein 6, GH09086P 96.1 0.035 1.2E-06 49.3 10.4 23 179-201 15-37 (179)
291 2fu5_C RAS-related protein RAB 96.1 0.062 2.1E-06 48.0 12.2 23 179-201 9-31 (183)
292 2atv_A RERG, RAS-like estrogen 96.0 0.071 2.4E-06 48.5 12.7 23 179-201 29-51 (196)
293 3c8u_A Fructokinase; YP_612366 96.0 0.0034 1.1E-07 58.6 3.5 25 179-203 23-47 (208)
294 1z0f_A RAB14, member RAS oncog 96.0 0.074 2.5E-06 47.1 12.3 24 179-202 16-39 (179)
295 3e2i_A Thymidine kinase; Zn-bi 96.0 0.012 4.2E-07 55.0 7.1 34 179-212 29-65 (219)
296 2g6b_A RAS-related protein RAB 96.0 0.11 3.7E-06 46.2 13.4 24 179-202 11-34 (180)
297 1ek0_A Protein (GTP-binding pr 96.0 0.048 1.7E-06 47.8 10.9 23 179-201 4-26 (170)
298 3tui_C Methionine import ATP-b 96.0 0.012 4E-07 60.0 7.5 25 179-203 55-79 (366)
299 2qmh_A HPR kinase/phosphorylas 96.0 0.0039 1.3E-07 57.8 3.6 28 179-207 35-62 (205)
300 3pqc_A Probable GTP-binding pr 96.0 0.15 5E-06 45.9 14.4 23 179-201 24-46 (195)
301 1z0j_A RAB-22, RAS-related pro 96.0 0.09 3.1E-06 46.1 12.6 24 179-202 7-30 (170)
302 1svi_A GTP-binding protein YSX 96.0 0.1 3.4E-06 47.2 13.2 23 179-201 24-46 (195)
303 4edh_A DTMP kinase, thymidylat 95.9 0.0097 3.3E-07 55.9 6.2 35 179-213 7-44 (213)
304 3tkl_A RAS-related protein RAB 95.9 0.074 2.5E-06 48.0 12.1 23 179-201 17-39 (196)
305 1g16_A RAS-related protein SEC 95.9 0.068 2.3E-06 46.9 11.5 23 179-201 4-26 (170)
306 3gmt_A Adenylate kinase; ssgci 95.9 0.0052 1.8E-07 58.4 4.3 31 179-209 9-39 (230)
307 3lxw_A GTPase IMAP family memb 95.9 0.16 5.4E-06 48.5 14.9 24 179-202 22-45 (247)
308 1s96_A Guanylate kinase, GMP k 95.9 0.0048 1.6E-07 58.3 4.0 28 176-203 14-41 (219)
309 3thx_A DNA mismatch repair pro 95.9 0.032 1.1E-06 63.7 11.4 23 178-200 662-684 (934)
310 2yhs_A FTSY, cell division pro 95.9 0.24 8.2E-06 52.2 17.2 31 178-208 293-326 (503)
311 1znw_A Guanylate kinase, GMP k 95.9 0.005 1.7E-07 57.4 4.0 25 179-203 21-45 (207)
312 1t6n_A Probable ATP-dependent 95.9 0.068 2.3E-06 49.7 11.9 24 179-202 52-75 (220)
313 1gtv_A TMK, thymidylate kinase 95.9 0.0025 8.7E-08 59.3 1.8 24 180-203 2-25 (214)
314 1z6g_A Guanylate kinase; struc 95.9 0.0047 1.6E-07 58.2 3.7 24 179-202 24-47 (218)
315 2f9l_A RAB11B, member RAS onco 95.9 0.032 1.1E-06 51.1 9.4 24 179-202 6-29 (199)
316 2nzj_A GTP-binding protein REM 95.9 0.019 6.6E-07 50.9 7.6 23 179-201 5-27 (175)
317 3v9p_A DTMP kinase, thymidylat 95.8 0.0092 3.1E-07 56.7 5.6 36 178-213 25-67 (227)
318 4gp7_A Metallophosphoesterase; 95.8 0.0046 1.6E-07 55.8 3.3 20 179-198 10-29 (171)
319 3thx_B DNA mismatch repair pro 95.8 0.044 1.5E-06 62.4 12.0 23 178-200 673-695 (918)
320 1j8m_F SRP54, signal recogniti 95.8 0.16 5.4E-06 50.1 14.7 35 178-212 98-135 (297)
321 2a5j_A RAS-related protein RAB 95.8 0.039 1.3E-06 50.1 9.6 23 179-201 22-44 (191)
322 1htw_A HI0065; nucleotide-bind 95.8 0.0063 2.2E-07 54.4 4.1 24 179-202 34-57 (158)
323 2gf9_A RAS-related protein RAB 95.8 0.092 3.1E-06 47.4 12.0 23 179-201 23-45 (189)
324 1fzq_A ADP-ribosylation factor 95.8 0.04 1.4E-06 49.6 9.5 23 179-201 17-39 (181)
325 2bme_A RAB4A, RAS-related prot 95.7 0.098 3.4E-06 46.8 12.1 23 179-201 11-33 (186)
326 1x3s_A RAS-related protein RAB 95.7 0.05 1.7E-06 49.1 10.1 23 179-201 16-38 (195)
327 1r8s_A ADP-ribosylation factor 95.7 0.09 3.1E-06 45.9 11.5 23 180-202 2-24 (164)
328 3e70_C DPA, signal recognition 95.7 0.016 5.3E-07 58.3 7.1 33 177-209 128-163 (328)
329 3tqc_A Pantothenate kinase; bi 95.7 0.015 5.2E-07 58.1 6.9 25 179-203 93-117 (321)
330 2orv_A Thymidine kinase; TP4A 95.7 0.014 4.9E-07 55.2 6.3 34 178-211 19-55 (234)
331 2eyu_A Twitching motility prot 95.7 0.0062 2.1E-07 59.2 3.9 24 179-202 26-49 (261)
332 2p5s_A RAS and EF-hand domain 95.7 0.14 4.8E-06 46.6 13.0 23 179-201 29-51 (199)
333 1z08_A RAS-related protein RAB 95.7 0.12 4.2E-06 45.2 12.3 23 179-201 7-29 (170)
334 2f7s_A C25KG, RAS-related prot 95.7 0.037 1.3E-06 51.3 9.0 23 179-201 26-48 (217)
335 2yc2_C IFT27, small RAB-relate 95.6 0.032 1.1E-06 51.1 8.3 23 179-201 21-43 (208)
336 2v9p_A Replication protein E1; 95.6 0.01 3.5E-07 59.0 5.1 34 176-209 124-157 (305)
337 2jeo_A Uridine-cytidine kinase 95.6 0.0074 2.5E-07 57.8 4.0 27 179-205 26-52 (245)
338 1xjc_A MOBB protein homolog; s 95.6 0.012 4.3E-07 53.0 5.2 32 179-210 5-39 (169)
339 1x6v_B Bifunctional 3'-phospho 95.6 0.011 3.7E-07 64.4 5.6 32 179-210 53-87 (630)
340 3lnc_A Guanylate kinase, GMP k 95.6 0.0047 1.6E-07 58.5 2.4 26 178-203 27-53 (231)
341 3b9q_A Chloroplast SRP recepto 95.6 0.018 6.3E-07 57.1 6.8 31 177-207 99-132 (302)
342 3t1o_A Gliding protein MGLA; G 95.6 0.072 2.5E-06 48.1 10.4 24 179-202 15-38 (198)
343 2bcg_Y Protein YP2, GTP-bindin 95.5 0.15 5.1E-06 46.6 12.7 23 179-201 9-31 (206)
344 2fwr_A DNA repair protein RAD2 95.5 0.07 2.4E-06 56.0 11.6 48 153-211 94-141 (472)
345 4dhe_A Probable GTP-binding pr 95.5 0.11 3.8E-06 48.1 11.9 23 179-201 30-52 (223)
346 3cbq_A GTP-binding protein REM 95.5 0.11 3.9E-06 47.3 11.7 22 179-200 24-45 (195)
347 1np6_A Molybdopterin-guanine d 95.5 0.0093 3.2E-07 54.2 4.0 31 179-209 7-40 (174)
348 3reg_A RHO-like small GTPase; 95.5 0.17 6E-06 45.7 12.8 24 179-202 24-47 (194)
349 1a7j_A Phosphoribulokinase; tr 95.5 0.0041 1.4E-07 61.4 1.7 25 179-203 6-30 (290)
350 2e87_A Hypothetical protein PH 95.5 0.49 1.7E-05 47.7 17.2 23 179-201 168-190 (357)
351 4a2p_A RIG-I, retinoic acid in 95.4 0.31 1.1E-05 51.8 16.4 24 179-202 23-46 (556)
352 1tf7_A KAIC; homohexamer, hexa 95.4 0.057 2E-06 57.8 10.5 39 174-212 277-318 (525)
353 3tw8_B RAS-related protein RAB 95.4 0.17 5.9E-06 44.7 12.1 23 179-201 10-32 (181)
354 2lkc_A Translation initiation 95.4 0.3 1E-05 43.1 13.7 23 179-201 9-31 (178)
355 2og2_A Putative signal recogni 95.3 0.024 8.3E-07 57.6 7.0 31 177-207 156-189 (359)
356 2ew1_A RAS-related protein RAB 95.3 0.16 5.6E-06 46.6 12.1 23 179-201 27-49 (201)
357 2wsm_A Hydrogenase expression/ 95.3 0.015 5.3E-07 54.2 5.1 45 151-203 11-55 (221)
358 2hxs_A RAB-26, RAS-related pro 95.3 0.15 5.1E-06 45.1 11.5 23 179-201 7-29 (178)
359 3b5x_A Lipid A export ATP-bind 95.3 0.047 1.6E-06 59.3 9.6 25 178-202 369-393 (582)
360 2qu8_A Putative nucleolar GTP- 95.3 0.39 1.3E-05 44.8 14.9 23 179-201 30-52 (228)
361 1rj9_A FTSY, signal recognitio 95.3 0.012 4.2E-07 58.4 4.4 25 178-202 102-126 (304)
362 1m2o_B GTP-binding protein SAR 95.3 0.1 3.5E-06 47.3 10.4 23 179-201 24-46 (190)
363 2ocp_A DGK, deoxyguanosine kin 95.3 0.013 4.3E-07 56.0 4.3 27 179-205 3-30 (241)
364 3lv8_A DTMP kinase, thymidylat 95.2 0.024 8.1E-07 54.1 6.2 36 178-213 27-66 (236)
365 2j37_W Signal recognition part 95.2 0.4 1.4E-05 50.9 16.2 33 179-211 102-137 (504)
366 1wb9_A DNA mismatch repair pro 95.2 0.12 4.2E-06 58.0 12.9 24 178-201 607-630 (800)
367 2ffh_A Protein (FFH); SRP54, s 95.2 0.3 1E-05 50.7 14.7 34 178-211 98-134 (425)
368 1p5z_B DCK, deoxycytidine kina 95.1 0.0059 2E-07 59.2 1.6 28 179-206 25-53 (263)
369 3iev_A GTP-binding protein ERA 95.1 0.23 7.8E-06 49.1 13.3 25 177-201 9-33 (308)
370 4bas_A ADP-ribosylation factor 95.1 0.23 7.9E-06 44.8 12.5 23 179-201 18-40 (199)
371 3tmk_A Thymidylate kinase; pho 95.1 0.02 6.8E-07 53.9 5.2 34 179-212 6-39 (216)
372 3bor_A Human initiation factor 95.1 0.078 2.7E-06 50.2 9.5 21 179-199 68-88 (237)
373 2ewv_A Twitching motility prot 95.1 0.012 4.1E-07 60.3 3.8 33 179-211 137-173 (372)
374 2gf0_A GTP-binding protein DI- 95.1 0.26 9E-06 44.4 12.7 23 179-201 9-31 (199)
375 2gk6_A Regulator of nonsense t 95.1 0.015 5.2E-07 63.7 4.8 39 153-202 181-219 (624)
376 3tbk_A RIG-I helicase domain; 95.0 0.32 1.1E-05 51.6 15.1 24 179-202 20-43 (555)
377 3pey_A ATP-dependent RNA helic 95.0 0.095 3.3E-06 53.0 10.5 22 179-200 45-66 (395)
378 1c9k_A COBU, adenosylcobinamid 95.0 0.014 4.8E-07 53.2 3.6 32 181-213 2-33 (180)
379 3q3j_B RHO-related GTP-binding 95.0 0.47 1.6E-05 43.8 14.3 23 179-201 28-50 (214)
380 4tmk_A Protein (thymidylate ki 95.0 0.031 1.1E-06 52.4 6.0 35 179-213 4-42 (213)
381 3aez_A Pantothenate kinase; tr 95.0 0.014 4.9E-07 58.2 3.8 26 178-203 90-115 (312)
382 1g8f_A Sulfate adenylyltransfe 94.9 0.021 7.3E-07 60.7 5.3 26 179-204 396-421 (511)
383 3kta_A Chromosome segregation 94.9 0.017 5.7E-07 52.3 3.9 26 179-204 27-52 (182)
384 2xxa_A Signal recognition part 94.9 0.31 1.1E-05 50.7 14.0 36 178-213 100-139 (433)
385 3tif_A Uncharacterized ABC tra 94.9 0.013 4.5E-07 55.9 3.3 25 179-203 32-56 (235)
386 3cpj_B GTP-binding protein YPT 94.9 0.22 7.5E-06 46.3 11.8 23 179-201 14-36 (223)
387 4dkx_A RAS-related protein RAB 94.9 0.23 7.7E-06 46.5 11.8 22 180-201 15-36 (216)
388 4hlc_A DTMP kinase, thymidylat 94.9 0.034 1.2E-06 51.8 5.9 36 179-214 3-40 (205)
389 2pcj_A ABC transporter, lipopr 94.8 0.013 4.3E-07 55.6 2.9 25 179-203 31-55 (224)
390 2o52_A RAS-related protein RAB 94.8 0.18 6.1E-06 46.1 10.8 23 179-201 26-48 (200)
391 2iut_A DNA translocase FTSK; n 94.8 0.15 5.3E-06 54.6 11.6 24 179-202 215-238 (574)
392 2fh5_B SR-beta, signal recogni 94.8 0.29 9.8E-06 45.0 12.3 24 179-202 8-31 (214)
393 2axn_A 6-phosphofructo-2-kinas 94.8 0.022 7.6E-07 61.0 5.1 32 179-210 36-70 (520)
394 3k53_A Ferrous iron transport 94.8 0.14 4.8E-06 49.5 10.5 23 179-201 4-26 (271)
395 2ged_A SR-beta, signal recogni 94.8 0.027 9.2E-07 51.1 5.0 24 179-202 49-72 (193)
396 3tqf_A HPR(Ser) kinase; transf 94.8 0.022 7.7E-07 51.3 4.3 27 179-206 17-43 (181)
397 1ksh_A ARF-like protein 2; sma 94.8 0.38 1.3E-05 42.9 12.7 23 179-201 19-41 (186)
398 2cbz_A Multidrug resistance-as 94.8 0.015 5.1E-07 55.6 3.3 24 179-202 32-55 (237)
399 1h65_A Chloroplast outer envel 94.8 0.27 9.4E-06 47.4 12.4 44 155-201 19-62 (270)
400 1q0u_A Bstdead; DEAD protein, 94.7 0.061 2.1E-06 50.1 7.5 21 179-199 42-62 (219)
401 3szr_A Interferon-induced GTP- 94.7 0.084 2.9E-06 57.6 9.6 24 179-202 46-69 (608)
402 1sq5_A Pantothenate kinase; P- 94.7 0.017 5.9E-07 57.4 3.8 25 179-203 81-105 (308)
403 3llu_A RAS-related GTP-binding 94.7 0.22 7.5E-06 45.2 11.1 23 179-201 21-43 (196)
404 1ewq_A DNA mismatch repair pro 94.7 0.16 5.6E-06 56.7 11.9 23 179-201 577-599 (765)
405 3def_A T7I23.11 protein; chlor 94.7 0.3 1E-05 46.9 12.5 24 179-202 37-60 (262)
406 2b6h_A ADP-ribosylation factor 94.7 0.075 2.6E-06 48.3 7.7 22 179-200 30-51 (192)
407 2oap_1 GSPE-2, type II secreti 94.7 0.02 6.7E-07 61.2 4.2 34 179-212 261-296 (511)
408 3fvq_A Fe(3+) IONS import ATP- 94.6 0.017 6E-07 58.6 3.5 24 179-202 31-54 (359)
409 2hf9_A Probable hydrogenase ni 94.6 0.036 1.2E-06 51.8 5.5 41 154-202 22-62 (226)
410 3b85_A Phosphate starvation-in 94.6 0.015 5E-07 54.5 2.7 23 179-201 23-45 (208)
411 2v3c_C SRP54, signal recogniti 94.6 0.047 1.6E-06 57.0 6.8 33 179-211 100-135 (432)
412 4i1u_A Dephospho-COA kinase; s 94.6 0.027 9.2E-07 52.7 4.5 30 179-209 10-39 (210)
413 2f1r_A Molybdopterin-guanine d 94.6 0.013 4.4E-07 53.1 2.1 24 179-202 3-26 (171)
414 1b0u_A Histidine permease; ABC 94.5 0.017 5.9E-07 56.0 3.1 25 179-203 33-57 (262)
415 1xti_A Probable ATP-dependent 94.5 0.22 7.5E-06 50.3 11.7 23 179-201 46-68 (391)
416 2onk_A Molybdate/tungstate ABC 94.5 0.019 6.5E-07 55.0 3.4 25 179-203 25-49 (240)
417 2wjy_A Regulator of nonsense t 94.5 0.026 8.7E-07 63.6 4.9 24 179-202 372-395 (800)
418 1zj6_A ADP-ribosylation factor 94.5 0.11 3.6E-06 46.8 8.3 23 179-201 17-39 (187)
419 1sgw_A Putative ABC transporte 94.5 0.016 5.5E-07 54.4 2.8 25 179-203 36-60 (214)
420 1m8p_A Sulfate adenylyltransfe 94.5 0.028 9.5E-07 60.9 5.0 32 179-210 397-432 (573)
421 2d2e_A SUFC protein; ABC-ATPas 94.5 0.021 7.3E-07 54.9 3.7 23 179-201 30-52 (250)
422 1vec_A ATP-dependent RNA helic 94.5 0.12 4.1E-06 47.4 8.7 21 179-199 41-61 (206)
423 2zu0_C Probable ATP-dependent 94.4 0.022 7.5E-07 55.5 3.6 24 179-202 47-70 (267)
424 3ld9_A DTMP kinase, thymidylat 94.4 0.025 8.6E-07 53.4 3.9 35 179-213 22-61 (223)
425 2pze_A Cystic fibrosis transme 94.4 0.02 6.7E-07 54.4 3.1 25 179-203 35-59 (229)
426 1g6h_A High-affinity branched- 94.4 0.019 6.6E-07 55.5 3.1 25 179-203 34-58 (257)
427 3dpu_A RAB family protein; roc 94.4 0.31 1.1E-05 52.2 12.9 23 179-201 42-64 (535)
428 1z47_A CYSA, putative ABC-tran 94.4 0.022 7.6E-07 57.8 3.7 25 179-203 42-66 (355)
429 1ji0_A ABC transporter; ATP bi 94.4 0.02 6.7E-07 54.8 3.1 24 179-202 33-56 (240)
430 2h17_A ADP-ribosylation factor 94.4 0.17 5.7E-06 45.3 9.3 23 179-201 22-44 (181)
431 2ff7_A Alpha-hemolysin translo 94.4 0.02 6.8E-07 55.1 3.1 25 179-203 36-60 (247)
432 3gfo_A Cobalt import ATP-bindi 94.4 0.02 6.7E-07 56.1 3.1 25 179-203 35-59 (275)
433 3rlf_A Maltose/maltodextrin im 94.4 0.022 7.7E-07 58.2 3.6 25 179-203 30-54 (381)
434 2it1_A 362AA long hypothetical 94.4 0.023 7.7E-07 57.9 3.6 25 179-203 30-54 (362)
435 2yyz_A Sugar ABC transporter, 94.3 0.023 7.8E-07 57.8 3.7 24 179-202 30-53 (359)
436 1mv5_A LMRA, multidrug resista 94.3 0.02 6.8E-07 54.9 3.1 24 179-202 29-52 (243)
437 2olj_A Amino acid ABC transpor 94.3 0.02 6.9E-07 55.6 3.1 25 179-203 51-75 (263)
438 2ghi_A Transport protein; mult 94.3 0.022 7.6E-07 55.2 3.3 24 179-202 47-70 (260)
439 2ixe_A Antigen peptide transpo 94.3 0.022 7.6E-07 55.5 3.3 25 179-203 46-70 (271)
440 2qi9_C Vitamin B12 import ATP- 94.3 0.022 7.4E-07 54.9 3.1 25 179-203 27-51 (249)
441 3p32_A Probable GTPase RV1496/ 94.2 0.098 3.4E-06 53.0 8.1 31 179-209 80-113 (355)
442 1v43_A Sugar-binding transport 94.2 0.025 8.4E-07 57.8 3.6 24 179-202 38-61 (372)
443 4a2q_A RIG-I, retinoic acid in 94.2 0.55 1.9E-05 52.8 15.1 24 179-202 264-287 (797)
444 4g1u_C Hemin import ATP-bindin 94.2 0.022 7.6E-07 55.4 3.1 24 179-202 38-61 (266)
445 1g29_1 MALK, maltose transport 94.2 0.025 8.6E-07 57.8 3.7 24 179-202 30-53 (372)
446 3hjn_A DTMP kinase, thymidylat 94.2 0.058 2E-06 49.8 5.8 35 181-215 3-40 (197)
447 1vpl_A ABC transporter, ATP-bi 94.2 0.024 8.1E-07 54.8 3.2 25 179-203 42-66 (256)
448 1lw7_A Transcriptional regulat 94.2 0.028 9.6E-07 57.2 4.0 27 179-205 171-197 (365)
449 2xau_A PRE-mRNA-splicing facto 94.2 0.52 1.8E-05 52.8 14.6 23 179-201 110-132 (773)
450 2ihy_A ABC transporter, ATP-bi 94.2 0.023 7.8E-07 55.7 3.1 25 179-203 48-72 (279)
451 3d31_A Sulfate/molybdate ABC t 94.2 0.02 7E-07 57.9 2.9 25 179-203 27-51 (348)
452 2gza_A Type IV secretion syste 94.2 0.019 6.4E-07 58.5 2.6 33 179-211 176-210 (361)
453 1w36_D RECD, exodeoxyribonucle 94.1 0.026 9E-07 61.6 3.9 24 179-202 165-188 (608)
454 2yz2_A Putative ABC transporte 94.1 0.025 8.4E-07 55.0 3.1 24 179-202 34-57 (266)
455 3sop_A Neuronal-specific septi 94.1 0.028 9.5E-07 54.8 3.5 23 180-202 4-26 (270)
456 2nq2_C Hypothetical ABC transp 94.0 0.025 8.5E-07 54.6 3.1 25 179-203 32-56 (253)
457 2o8b_B DNA mismatch repair pro 94.0 0.29 1E-05 56.5 12.4 22 178-199 789-810 (1022)
458 3a1s_A Iron(II) transport prot 94.0 0.3 1E-05 47.0 10.7 23 179-201 6-28 (258)
459 1oix_A RAS-related protein RAB 94.0 0.03 1E-06 51.1 3.3 24 179-202 30-53 (191)
460 4a2w_A RIG-I, retinoic acid in 93.9 0.66 2.2E-05 53.2 15.2 24 179-202 264-287 (936)
461 1f6b_A SAR1; gtpases, N-termin 93.9 0.11 3.6E-06 47.6 7.1 22 179-200 26-47 (198)
462 3cr8_A Sulfate adenylyltranfer 93.9 0.024 8E-07 61.1 2.9 25 179-203 370-394 (552)
463 2dyk_A GTP-binding protein; GT 93.9 0.034 1.2E-06 48.5 3.4 24 179-202 2-25 (161)
464 1dek_A Deoxynucleoside monopho 93.9 0.032 1.1E-06 53.4 3.5 29 179-207 2-30 (241)
465 2xzl_A ATP-dependent helicase 93.9 0.035 1.2E-06 62.6 4.3 23 179-201 376-398 (802)
466 3ch4_B Pmkase, phosphomevalona 93.9 0.048 1.6E-06 50.5 4.5 30 175-204 8-37 (202)
467 1tq4_A IIGP1, interferon-induc 93.9 0.055 1.9E-06 56.0 5.4 38 158-201 55-92 (413)
468 2yv5_A YJEQ protein; hydrolase 93.9 0.033 1.1E-06 55.2 3.6 24 179-203 166-189 (302)
469 3gd7_A Fusion complex of cysti 93.9 0.031 1E-06 57.5 3.5 24 179-202 48-71 (390)
470 1oxx_K GLCV, glucose, ABC tran 93.8 0.021 7.3E-07 57.9 2.2 24 179-202 32-55 (353)
471 4f4c_A Multidrug resistance pr 93.8 0.096 3.3E-06 62.4 8.0 28 177-204 443-470 (1321)
472 1u0l_A Probable GTPase ENGC; p 93.8 0.03 1E-06 55.4 3.1 25 179-203 170-194 (301)
473 2pjz_A Hypothetical protein ST 93.7 0.031 1.1E-06 54.3 3.0 24 179-202 31-54 (263)
474 2vp4_A Deoxynucleoside kinase; 93.7 0.037 1.3E-06 52.3 3.5 32 178-210 20-51 (230)
475 2pt7_A CAG-ALFA; ATPase, prote 93.7 0.022 7.6E-07 57.2 2.0 34 179-212 172-207 (330)
476 1ko7_A HPR kinase/phosphatase; 93.6 0.088 3E-06 52.3 6.2 51 155-206 115-171 (314)
477 1bif_A 6-phosphofructo-2-kinas 93.6 0.031 1.1E-06 59.0 3.1 25 179-203 40-64 (469)
478 2ykg_A Probable ATP-dependent 93.6 1.1 3.7E-05 49.3 15.8 23 179-201 29-51 (696)
479 3r7w_A Gtpase1, GTP-binding pr 93.6 0.4 1.4E-05 47.3 11.1 23 179-201 4-26 (307)
480 1yrb_A ATP(GTP)binding protein 93.6 0.076 2.6E-06 50.8 5.6 32 179-210 15-48 (262)
481 2bbs_A Cystic fibrosis transme 93.6 0.034 1.2E-06 54.8 3.1 24 179-202 65-88 (290)
482 2g3y_A GTP-binding protein GEM 93.5 0.29 9.8E-06 45.5 9.3 22 179-200 38-59 (211)
483 2v6i_A RNA helicase; membrane, 93.4 0.43 1.5E-05 49.5 11.4 32 179-210 3-38 (431)
484 2zej_A Dardarin, leucine-rich 93.4 0.037 1.3E-06 50.0 2.8 21 180-200 4-24 (184)
485 2wji_A Ferrous iron transport 93.4 0.045 1.6E-06 48.4 3.4 23 179-201 4-26 (165)
486 1f2t_A RAD50 ABC-ATPase; DNA d 93.4 0.047 1.6E-06 48.0 3.4 24 179-202 24-47 (149)
487 2rcn_A Probable GTPase ENGC; Y 93.4 0.031 1E-06 56.7 2.4 25 179-203 216-240 (358)
488 2obl_A ESCN; ATPase, hydrolase 93.3 0.072 2.5E-06 53.8 5.0 28 179-206 72-99 (347)
489 3vlf_B 26S protease regulatory 93.3 0.0074 2.5E-07 48.2 -1.9 52 57-118 20-71 (88)
490 3fe2_A Probable ATP-dependent 93.2 0.16 5.5E-06 48.0 7.2 20 179-198 67-86 (242)
491 1wp9_A ATP-dependent RNA helic 93.1 0.54 1.9E-05 48.4 11.7 31 180-210 25-59 (494)
492 2qm8_A GTPase/ATPase; G protei 93.1 0.056 1.9E-06 54.4 3.8 24 179-202 56-79 (337)
493 2gks_A Bifunctional SAT/APS ki 93.1 0.071 2.4E-06 57.3 4.8 25 179-203 373-397 (546)
494 2zpa_A Uncharacterized protein 93.1 0.17 5.8E-06 55.3 7.8 98 179-305 193-290 (671)
495 3nh6_A ATP-binding cassette SU 93.0 0.038 1.3E-06 54.8 2.5 26 178-203 80-105 (306)
496 2www_A Methylmalonic aciduria 93.0 0.14 4.8E-06 51.7 6.7 25 178-202 74-98 (349)
497 2krk_A 26S protease regulatory 92.9 0.0076 2.6E-07 47.9 -2.3 50 57-114 30-79 (86)
498 2dpy_A FLII, flagellum-specifi 92.9 0.083 2.8E-06 55.2 5.0 28 179-206 158-185 (438)
499 4dcu_A GTP-binding protein ENG 92.9 0.36 1.2E-05 50.6 9.9 23 179-201 24-46 (456)
500 3h1t_A Type I site-specific re 92.9 0.32 1.1E-05 52.6 9.8 45 152-202 178-222 (590)
No 1
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=100.00 E-value=5.8e-37 Score=332.50 Aligned_cols=335 Identities=16% Similarity=0.195 Sum_probs=236.7
Q ss_pred CCCcCCCCCCCcccccCCCCcchhccChHHHHHHHHHHHHhhcCC---------CCCCCccEEEEEcCCCCcHHHHHHHH
Q 009072 128 SASASSSTQQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDS---------KDKFSTNVLVITGQAGVGKTATVRQI 198 (544)
Q Consensus 128 ~~~~~~~~~~lW~eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~---------~g~~~~~~lLL~GPpG~GKTtla~~l 198 (544)
...+......+|++||+|+++++++|++..+++|..|+..|.... .+..+.+.+||+||||||||++|+++
T Consensus 18 ~~~~~~~~~~lW~ekyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~l 97 (516)
T 1sxj_A 18 FQGPHMASDKLWTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLV 97 (516)
T ss_dssp --------CCCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHH
T ss_pred ccCCCCccCCCcccccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHH
Confidence 333556677899999999999999999999999999998864211 11123479999999999999999999
Q ss_pred HHHhCCeEEEEeCCCchhhh---hhhhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCch
Q 009072 199 ASHLGARLYEWDTPTPTIWQ---EYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGR 275 (544)
Q Consensus 199 A~elg~~viei~~s~~~~~~---e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~ 275 (544)
|+++++.++++++++.+... ..+........ +..++..+.. ......++.||||||+|.+...
T Consensus 98 a~~l~~~~i~in~s~~~~~~~~~~~i~~~~~~~~-------~~~~~~~~~~-------~~~~~~~~~vliIDEid~l~~~ 163 (516)
T 1sxj_A 98 AQELGYDILEQNASDVRSKTLLNAGVKNALDNMS-------VVGYFKHNEE-------AQNLNGKHFVIIMDEVDGMSGG 163 (516)
T ss_dssp HHHTTCEEEEECTTSCCCHHHHHHTGGGGTTBCC-------STTTTTC-----------CCSSTTSEEEEECSGGGCCTT
T ss_pred HHHcCCCEEEEeCCCcchHHHHHHHHHHHhcccc-------HHHHHhhhhh-------hhhccCCCeEEEEECCCccchh
Confidence 99999999999998754211 00000000000 0000100000 0011245789999999998653
Q ss_pred hHHHHHHHHHHHHHhcCCCcEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHHhCCC
Q 009072 276 TAFERLRQCLLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYS 355 (544)
Q Consensus 276 ~~~~~~~~~L~~~~~~~~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~ 355 (544)
. ....+.|..+++....|+|+|+++... ..+ +++. + +|..+.|++|+.+++.++|..++..+++.
T Consensus 164 ~--~~~l~~L~~~l~~~~~~iIli~~~~~~--------~~l---~~l~-~-r~~~i~f~~~~~~~~~~~L~~i~~~~~~~ 228 (516)
T 1sxj_A 164 D--RGGVGQLAQFCRKTSTPLILICNERNL--------PKM---RPFD-R-VCLDIQFRRPDANSIKSRLMTIAIREKFK 228 (516)
T ss_dssp S--TTHHHHHHHHHHHCSSCEEEEESCTTS--------STT---GGGT-T-TSEEEECCCCCHHHHHHHHHHHHHHHTCC
T ss_pred h--HHHHHHHHHHHHhcCCCEEEEEcCCCC--------ccc---hhhH-h-ceEEEEeCCCCHHHHHHHHHHHHHHcCCC
Confidence 2 123356777778888899988876321 111 2232 2 48899999999999999999999999999
Q ss_pred CCHHHHHHHHHHcCCcHHHHHHHHHHhccCCCCCccccccCCCCCCCCccCCCCCC--ccccccccccchhhHhhhhhhc
Q 009072 356 LSTEQIDLVAQASGGDIRQAITSLQFSSLKQDPMLNLSLSISKPNFPEEKADGHGG--FSIQFGRDETLSLFHALGKFLH 433 (544)
Q Consensus 356 i~~~~l~~Ia~~s~GDiR~aIn~Lq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~rD~~l~lF~algkil~ 433 (544)
+++++++.|++.++||+|.+++.||+++........ ... ......||..+++|+++++||+
T Consensus 229 i~~~~l~~la~~s~GdiR~~i~~L~~~~~~~~~It~-----------------~~v~~~~~~~~~~~~~~~f~~~~~il~ 291 (516)
T 1sxj_A 229 LDPNVIDRLIQTTRGDIRQVINLLSTISTTTKTINH-----------------ENINEISKAWEKNIALKPFDIAHKMLD 291 (516)
T ss_dssp CCTTHHHHHHHHTTTCHHHHHHHHTHHHHHSSCCCT-----------------THHHHHHHHHHTTTTSHHHHHHHHHTB
T ss_pred CCHHHHHHHHHHcCCcHHHHHHHHHHHHhcCCCCch-----------------HHHHHHHHhhccCCCCCHHHHHHHHhc
Confidence 999999999999999999999999999864332111 000 0112348889999999999999
Q ss_pred cccCCCccccCCccccccccccccCCCCCCChHHHHHhcCCChHHHHHHHHhcCCCCCcc------chhhhHHHHhhhHh
Q 009072 434 NKRETDNLVKMDQDAFVVKDKFSRLPLKMDAPEKVLSQAHGQARPVLDFLHENCWLDIMR------QTMFYNLLRLQLLL 507 (544)
Q Consensus 434 ~Kr~~~~~~~~~~~~~~~~~~~~r~pl~~~~pe~v~~~~~~~~~~~~~~LheNy~~~f~~------~~~i~~~~~~~~~~ 507 (544)
+++....... + ...++.++....+++.+..|||||| +.++. +..+++++.+
T Consensus 292 ~~~~~~~~~~-------------~-----~~~~~~~~~~~~~~~~~~~~i~eNy-~~~~p~~~~~~~~~l~~~~~a---- 348 (516)
T 1sxj_A 292 GQIYSDIGSR-------------N-----FTLNDKIALYFDDFDFTPLMIQENY-LSTRPSVLKPGQSHLEAVAEA---- 348 (516)
T ss_dssp GGGTSTTGGG-------------T-----SCHHHHHHHHTTSTTTHHHHHHHHS-SSSEESCCCTTCCHHHHHHHH----
T ss_pred CCcccccccc-------------C-----CCHHHhhhhhccCHHHHHHHHHHHh-hhccccccCCchhHHHHHHHH----
Confidence 8875431110 0 1245677788889999999999999 87774 2368889999
Q ss_pred hhhhhhhhhhHHhcCCCcc-ccchhhHH
Q 009072 508 VEYYLEILIQCLLGGMLFV-SQSSGEWT 534 (544)
Q Consensus 508 ~~~ls~~~aD~~~~~~~~~-~q~~~~w~ 534 (544)
++|||+ +|++. +.+++ +|+|++|.
T Consensus 349 ~d~ls~--~D~~~-~~i~~~~q~~~l~~ 373 (516)
T 1sxj_A 349 ANCISL--GDIVE-KKIRSSEQLWSLLP 373 (516)
T ss_dssp HHHHHH--HHHHH-HHHTTCSSCGGGHH
T ss_pred HHHHhH--HHHHH-HHHccCCCCcccch
Confidence 999999 99998 67777 78888874
No 2
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.92 E-value=1.5e-24 Score=221.14 Aligned_cols=203 Identities=14% Similarity=0.277 Sum_probs=148.7
Q ss_pred CCCCCCcccccCCCCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCC
Q 009072 133 SSTQQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTP 212 (544)
Q Consensus 133 ~~~~~lW~eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s 212 (544)
.....+|++||+|+++++++|+++.++.+..|+.. +..+ +.+|++||||||||++|+++|++++.++++++++
T Consensus 10 ~~~~~~~~~k~rP~~~~~ivg~~~~~~~l~~~l~~------~~~~-~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~ 82 (324)
T 3u61_B 10 NEKEHILEQKYRPSTIDECILPAFDKETFKSITSK------GKIP-HIILHSPSPGTGKTTVAKALCHDVNADMMFVNGS 82 (324)
T ss_dssp CTTCSSHHHHSCCCSTTTSCCCHHHHHHHHHHHHT------TCCC-SEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETT
T ss_pred CcccchHHHhhCCCCHHHHhCcHHHHHHHHHHHHc------CCCC-eEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEccc
Confidence 35578999999999999999999999999999984 4444 7889999999999999999999999999999976
Q ss_pred CchhhhhhhhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHHHHHhcC
Q 009072 213 TPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRST 292 (544)
Q Consensus 213 ~~~~~~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~~~~~~ 292 (544)
+.. .+.++..+......... .+.+.||||||+|.+.+... ++.|+.+++..
T Consensus 83 ~~~------------------~~~i~~~~~~~~~~~~~-------~~~~~vliiDEi~~l~~~~~----~~~L~~~le~~ 133 (324)
T 3u61_B 83 DCK------------------IDFVRGPLTNFASAASF-------DGRQKVIVIDEFDRSGLAES----QRHLRSFMEAY 133 (324)
T ss_dssp TCC------------------HHHHHTHHHHHHHBCCC-------SSCEEEEEEESCCCGGGHHH----HHHHHHHHHHH
T ss_pred ccC------------------HHHHHHHHHHHHhhccc-------CCCCeEEEEECCcccCcHHH----HHHHHHHHHhC
Confidence 521 13344444433222111 13578999999999863222 34455555543
Q ss_pred CCcEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHHH-------HHHHHHHHHHHhCCCCCH-HHHHHH
Q 009072 293 HIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGS-------IKRTLSKICRQEQYSLST-EQIDLV 364 (544)
Q Consensus 293 ~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~-------i~~~L~~i~~~e~~~i~~-~~l~~I 364 (544)
...+++|++.+.. .. ..+++.+| |..+.|++|+.++ +.+.+..++..+++.+++ ++++.|
T Consensus 134 ~~~~~iI~~~n~~-------~~---l~~~l~sR--~~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l 201 (324)
T 3u61_B 134 SSNCSIIITANNI-------DG---IIKPLQSR--CRVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAAL 201 (324)
T ss_dssp GGGCEEEEEESSG-------GG---SCTTHHHH--SEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHH
T ss_pred CCCcEEEEEeCCc-------cc---cCHHHHhh--CcEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHH
Confidence 2222333322111 01 11344444 7899999999877 566677778889999988 999999
Q ss_pred HHHcCCcHHHHHHHHHHhc
Q 009072 365 AQASGGDIRQAITSLQFSS 383 (544)
Q Consensus 365 a~~s~GDiR~aIn~Lq~~~ 383 (544)
++.++||+|.|+|.||.++
T Consensus 202 ~~~~~gd~R~a~~~L~~~~ 220 (324)
T 3u61_B 202 VKKNFPDFRKTIGELDSYS 220 (324)
T ss_dssp HHHTCSCTTHHHHHHHHHG
T ss_pred HHhCCCCHHHHHHHHHHHh
Confidence 9999999999999999998
No 3
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.89 E-value=2.6e-22 Score=206.88 Aligned_cols=308 Identities=15% Similarity=0.194 Sum_probs=176.8
Q ss_pred CCcccccCCCCcchhccChHHHHHHHHHH-HHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhCC-e--EEEEe--
Q 009072 137 QLWAEKYKPRSLEELAVQRKKVEEVRAWF-EERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGA-R--LYEWD-- 210 (544)
Q Consensus 137 ~lW~eky~P~~~~dLv~~~~~~~~l~~wL-~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg~-~--viei~-- 210 (544)
.+|++||+|+++++++|++..++.++.|+ .. +..+ + ++|+||+|+||||+++++|+++.. . -+.++
T Consensus 2 ~~w~~kyrP~~~~~~vg~~~~~~~l~~~~~~~------~~~~-~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~ 73 (354)
T 1sxj_E 2 SLWVDKYRPKSLNALSHNEELTNFLKSLSDQP------RDLP-H-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVR 73 (354)
T ss_dssp --CTTTTCCCSGGGCCSCHHHHHHHHTTTTCT------TCCC-C-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------
T ss_pred CcchhccCCCCHHHhcCCHHHHHHHHHHHhhC------CCCC-e-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecce
Confidence 38999999999999999999998888776 32 4444 4 999999999999999999997521 1 01111
Q ss_pred ---CCCchhhhhhhhc------c-ccCcccc-cchHHHHHHHHHHHhhcCCCCC--CCCCCCCceEEEEecCCCCCchhH
Q 009072 211 ---TPTPTIWQEYMHN------C-KTGLEYT-SKLDEFENFVERIRRYGSTSPS--IPGESKSSAILLIDDLPVTNGRTA 277 (544)
Q Consensus 211 ---~s~~~~~~e~l~~------~-~~g~~~~-s~~~~~~~~l~~~~~~~~l~~~--~~~~~~~~~vIlIDEid~l~~~~~ 277 (544)
.+... ...+.. . ....... .....+++.+..+.....+... ..+...++.||||||++.++.. +
T Consensus 74 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~~-~ 150 (354)
T 1sxj_E 74 QFVTASNR--KLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKD-A 150 (354)
T ss_dssp --------------CCEECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCHH-H
T ss_pred eecccccc--cceeeeecccceEEecHhhcCCcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCHH-H
Confidence 00000 000000 0 0000000 0001344555544332211100 0001246889999999997643 2
Q ss_pred HHHHHHHHHHHHhcCC-CcEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHHhCCCC
Q 009072 278 FERLRQCLLLLVRSTH-IPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSL 356 (544)
Q Consensus 278 ~~~~~~~L~~~~~~~~-~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i 356 (544)
. +.|.++++... ...++++++... .. ++++.+| |..+.|.|++.+++.++|..++..+++.+
T Consensus 151 ~----~~L~~~le~~~~~~~~Il~t~~~~--------~l---~~~l~sR--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 213 (354)
T 1sxj_E 151 Q----AALRRTMEKYSKNIRLIMVCDSMS--------PI---IAPIKSQ--CLLIRCPAPSDSEISTILSDVVTNERIQL 213 (354)
T ss_dssp H----HHHHHHHHHSTTTEEEEEEESCSC--------SS---CHHHHTT--SEEEECCCCCHHHHHHHHHHHHHHHTCEE
T ss_pred H----HHHHHHHHhhcCCCEEEEEeCCHH--------HH---HHHHHhh--ceEEecCCcCHHHHHHHHHHHHHHcCCCC
Confidence 2 33444444432 223444443211 11 2345454 89999999999999999999999999999
Q ss_pred C-HHHHHHHHHHcCCcHHHHHHHHHHhccCCCCCccccccCCCCCCCCccCCCCCCccccccccccchhhHhhhhhhccc
Q 009072 357 S-TEQIDLVAQASGGDIRQAITSLQFSSLKQDPMLNLSLSISKPNFPEEKADGHGGFSIQFGRDETLSLFHALGKFLHNK 435 (544)
Q Consensus 357 ~-~~~l~~Ia~~s~GDiR~aIn~Lq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rD~~l~lF~algkil~~K 435 (544)
+ +++++.|++.++||+|.|++.||.++......... .. .+...+....+|..+..++...
T Consensus 214 ~~~~~l~~i~~~~~G~~r~a~~~l~~~~~~~~~~i~~----------------~~---~~~~~~~~~~~~~l~~~i~~~~ 274 (354)
T 1sxj_E 214 ETKDILKRIAQASNGNLRVSLLMLESMALNNELALKS----------------SS---PIIKPDWIIVIHKLTRKIVKER 274 (354)
T ss_dssp CCSHHHHHHHHHHTTCHHHHHHHHTHHHHTTTTEECS----------------SC---CCCCCHHHHHHHHHHHHHHHCC
T ss_pred CcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCcCc----------------Cc---CCCCccHHHHHHHHHHHHHHhc
Confidence 9 99999999999999999999999887654311110 11 1233444456788888787542
Q ss_pred cCCCccccCCccccccccccccCCCCCCChHHHHHhcCCChHHHHHHHHhcCCCC--CccchhhhHHHHhhhHhhhhhhh
Q 009072 436 RETDNLVKMDQDAFVVKDKFSRLPLKMDAPEKVLSQAHGQARPVLDFLHENCWLD--IMRQTMFYNLLRLQLLLVEYYLE 513 (544)
Q Consensus 436 r~~~~~~~~~~~~~~~~~~~~r~pl~~~~pe~v~~~~~~~~~~~~~~LheNy~~~--f~~~~~i~~~~~~~~~~~~~ls~ 513 (544)
... ... .+.+ ...+++ ..+.++..+..-|+..+ .. -+++..+.++ ++++++
T Consensus 275 ~~~--~~~------~~~~----------~l~~l~-~~g~~~~~i~~~l~~~~-~~~~~~~~~~l~~~-------~~~l~~ 327 (354)
T 1sxj_E 275 SVN--SLI------ECRA----------VLYDLL-AHCIPANIILKELTFSL-LDVETLNTTNKSSI-------IEYSSV 327 (354)
T ss_dssp SHH--HHH------HHHH----------HHHHHH-TTTCCHHHHHHHHHHTT-TTCTTSCHHHHHHH-------HHHHHH
T ss_pred chh--HHH------HHHH----------HHHHHH-HcCCCHHHHHHHHHHHH-HhccCCCHHHHHHH-------HHHHHH
Confidence 110 000 0000 001122 25667777777777765 44 3455444443 566777
Q ss_pred hhhhHHh
Q 009072 514 ILIQCLL 520 (544)
Q Consensus 514 ~~aD~~~ 520 (544)
.|--.
T Consensus 328 --~d~~l 332 (354)
T 1sxj_E 328 --FDERL 332 (354)
T ss_dssp --HHHHH
T ss_pred --HHHHH
Confidence 66544
No 4
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.88 E-value=7.6e-22 Score=202.62 Aligned_cols=204 Identities=22% Similarity=0.386 Sum_probs=148.3
Q ss_pred CCCCCCcccccCCCCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhC-----CeEE
Q 009072 133 SSTQQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLG-----ARLY 207 (544)
Q Consensus 133 ~~~~~lW~eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg-----~~vi 207 (544)
.....+|++||+|+++++++|++..++.|..++.. |..+ +++|+||||+||||+|+++|+.+. ..+.
T Consensus 9 ~~~~~~~~~k~rp~~~~~~~g~~~~~~~L~~~i~~------g~~~--~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~ 80 (340)
T 1sxj_C 9 SKENLPWVEKYRPETLDEVYGQNEVITTVRKFVDE------GKLP--HLLFYGPPGTGKTSTIVALAREIYGKNYSNMVL 80 (340)
T ss_dssp ---CCCHHHHTCCSSGGGCCSCHHHHHHHHHHHHT------TCCC--CEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEE
T ss_pred cccCCchHHHhCCCcHHHhcCcHHHHHHHHHHHhc------CCCc--eEEEECCCCCCHHHHHHHHHHHHcCCCccceEE
Confidence 34467999999999999999999999999988875 5554 399999999999999999999973 2467
Q ss_pred EEeCCCchhhhhhhhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHHH
Q 009072 208 EWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLL 287 (544)
Q Consensus 208 ei~~s~~~~~~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~ 287 (544)
++++++.+ +. +.+++.+......... . ...+.|++|||+|.+... .++.|+.
T Consensus 81 ~~~~~~~~-----------~~------~~ir~~i~~~~~~~~~---~---~~~~~viiiDe~~~l~~~-----~~~~L~~ 132 (340)
T 1sxj_C 81 ELNASDDR-----------GI------DVVRNQIKDFASTRQI---F---SKGFKLIILDEADAMTNA-----AQNALRR 132 (340)
T ss_dssp EECTTSCC-----------SH------HHHHTHHHHHHHBCCS---S---SCSCEEEEETTGGGSCHH-----HHHHHHH
T ss_pred EEcCcccc-----------cH------HHHHHHHHHHHhhccc---C---CCCceEEEEeCCCCCCHH-----HHHHHHH
Confidence 77765421 11 2333333332211110 0 123689999999998653 2345666
Q ss_pred HHhcCCCc-EEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 009072 288 LVRSTHIP-TAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQ 366 (544)
Q Consensus 288 ~~~~~~~p-iIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~l~~Ia~ 366 (544)
+++..... .++++++. ....++++.+| |..+.|.+++.+++.++|..++..+++.++++++..|++
T Consensus 133 ~le~~~~~~~~il~~n~-----------~~~i~~~i~sR--~~~~~~~~l~~~~~~~~l~~~~~~~~~~i~~~~~~~i~~ 199 (340)
T 1sxj_C 133 VIERYTKNTRFCVLANY-----------AHKLTPALLSQ--CTRFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIE 199 (340)
T ss_dssp HHHHTTTTEEEEEEESC-----------GGGSCHHHHTT--SEEEECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHH
T ss_pred HHhcCCCCeEEEEEecC-----------ccccchhHHhh--ceeEeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 66654433 33334331 11123455554 889999999999999999999999999999999999999
Q ss_pred HcCCcHHHHHHHHHHhccC
Q 009072 367 ASGGDIRQAITSLQFSSLK 385 (544)
Q Consensus 367 ~s~GDiR~aIn~Lq~~~~~ 385 (544)
.++||+|.+++.||.++..
T Consensus 200 ~s~G~~r~~~~~l~~~~~~ 218 (340)
T 1sxj_C 200 LSNGDMRRVLNVLQSCKAT 218 (340)
T ss_dssp HHTTCHHHHHHHTTTTTTT
T ss_pred HcCCCHHHHHHHHHHHHHh
Confidence 9999999999999988654
No 5
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.87 E-value=4.1e-21 Score=195.12 Aligned_cols=203 Identities=20% Similarity=0.325 Sum_probs=147.3
Q ss_pred CCCCcccccCCCCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhC-----CeEEEE
Q 009072 135 TQQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLG-----ARLYEW 209 (544)
Q Consensus 135 ~~~lW~eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg-----~~viei 209 (544)
.+.+|++||+|.++++++|++..++.+..|+.. +.. +++||+||||+|||++|+++|+++. ..++++
T Consensus 11 ~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~------~~~--~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~ 82 (327)
T 1iqp_A 11 LEKPWVEKYRPQRLDDIVGQEHIVKRLKHYVKT------GSM--PHLLFAGPPGVGKTTAALALARELFGENWRHNFLEL 82 (327)
T ss_dssp TTSCHHHHTCCCSTTTCCSCHHHHHHHHHHHHH------TCC--CEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEE
T ss_pred cCCchhhccCCCCHHHhhCCHHHHHHHHHHHHc------CCC--CeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEe
Confidence 357999999999999999999999999999976 444 3599999999999999999999973 346777
Q ss_pred eCCCchhhhhhhhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHHHHH
Q 009072 210 DTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLV 289 (544)
Q Consensus 210 ~~s~~~~~~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~~~ 289 (544)
++++... . +.++..+........+ ...++.||+|||++.+... .++.|..++
T Consensus 83 ~~~~~~~-----------~------~~~~~~~~~~~~~~~~------~~~~~~vliiDe~~~l~~~-----~~~~L~~~l 134 (327)
T 1iqp_A 83 NASDERG-----------I------NVIREKVKEFARTKPI------GGASFKIIFLDEADALTQD-----AQQALRRTM 134 (327)
T ss_dssp ETTCHHH-----------H------HTTHHHHHHHHHSCCG------GGCSCEEEEEETGGGSCHH-----HHHHHHHHH
T ss_pred eccccCc-----------h------HHHHHHHHHHHhhCCc------CCCCCeEEEEeCCCcCCHH-----HHHHHHHHH
Confidence 7654211 0 1111112221111110 0134789999999998643 234566666
Q ss_pred hcCCCcEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcC
Q 009072 290 RSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASG 369 (544)
Q Consensus 290 ~~~~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~l~~Ia~~s~ 369 (544)
+.....+++|++.... .. .++++.+| |..+.|.|++.+++..+|..++..+++.+++++++.|+..++
T Consensus 135 e~~~~~~~~i~~~~~~-------~~---l~~~l~sr--~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 202 (327)
T 1iqp_A 135 EMFSSNVRFILSCNYS-------SK---IIEPIQSR--CAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAE 202 (327)
T ss_dssp HHTTTTEEEEEEESCG-------GG---SCHHHHHT--EEEEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHT
T ss_pred HhcCCCCeEEEEeCCc-------cc---cCHHHHhh--CcEEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCC
Confidence 6644444444433111 01 12344444 789999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHhccC
Q 009072 370 GDIRQAITSLQFSSLK 385 (544)
Q Consensus 370 GDiR~aIn~Lq~~~~~ 385 (544)
||+|.+++.|+.++..
T Consensus 203 g~~r~~~~~l~~~~~~ 218 (327)
T 1iqp_A 203 GDMRRAINILQAAAAL 218 (327)
T ss_dssp TCHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHhc
Confidence 9999999999988754
No 6
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.87 E-value=1.1e-21 Score=198.65 Aligned_cols=202 Identities=21% Similarity=0.402 Sum_probs=146.9
Q ss_pred CCCcccccCCCCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHh-----CCeEEEEe
Q 009072 136 QQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL-----GARLYEWD 210 (544)
Q Consensus 136 ~~lW~eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~el-----g~~viei~ 210 (544)
..+|++||+|.++++++|++..++.+..++.. +..+ ++||+||||+|||++|+++|+++ +..+++++
T Consensus 4 ~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~------~~~~--~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~ 75 (319)
T 2chq_A 4 FEIWVEKYRPRTLDEVVGQDEVIQRLKGYVER------KNIP--HLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMN 75 (319)
T ss_dssp --CTTTTTSCSSGGGSCSCHHHHHHHHTTTTT------TCCC--CEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEE
T ss_pred cccHHHhcCCCCHHHHhCCHHHHHHHHHHHhC------CCCC--eEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEe
Confidence 46899999999999999999999999888754 4443 49999999999999999999997 34577888
Q ss_pred CCCchhhhhhhhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHHHHHh
Q 009072 211 TPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVR 290 (544)
Q Consensus 211 ~s~~~~~~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~~~~ 290 (544)
+++.. +... +...+........+ ...++.||+|||+|.+... .++.|..+++
T Consensus 76 ~~~~~-----------~~~~------~~~~~~~~~~~~~~------~~~~~~vliiDe~~~l~~~-----~~~~L~~~le 127 (319)
T 2chq_A 76 ASDER-----------GIDV------VRHKIKEFARTAPI------GGAPFKIIFLDEADALTAD-----AQAALRRTME 127 (319)
T ss_dssp TTSTT-----------CTTT------SSHHHHHHHHSCCS------SSCCCEEEEEETGGGSCHH-----HHHTTGGGTS
T ss_pred Ccccc-----------ChHH------HHHHHHHHHhcCCC------CCCCceEEEEeCCCcCCHH-----HHHHHHHHHH
Confidence 76521 1111 11112222111111 1135789999999998643 2355677777
Q ss_pred cCCCcEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC
Q 009072 291 STHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGG 370 (544)
Q Consensus 291 ~~~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~l~~Ia~~s~G 370 (544)
.....+++|++.... . ..++++.+| |..+.|.|++.+++..+|..++..+++.+++++++.|+..++|
T Consensus 128 ~~~~~~~~i~~~~~~--------~--~l~~~l~sr--~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G 195 (319)
T 2chq_A 128 MYSKSCRFILSCNYV--------S--RIIEPIQSR--CAVFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG 195 (319)
T ss_dssp SSSSSEEEEEEESCG--------G--GSCHHHHTT--CEEEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTT
T ss_pred hcCCCCeEEEEeCCh--------h--hcchHHHhh--CeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 654444444443211 0 112445554 7899999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHhccC
Q 009072 371 DIRQAITSLQFSSLK 385 (544)
Q Consensus 371 DiR~aIn~Lq~~~~~ 385 (544)
|+|.+++.||.++..
T Consensus 196 ~~r~~~~~l~~~~~~ 210 (319)
T 2chq_A 196 DFRKAINALQGAAAI 210 (319)
T ss_dssp CHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHc
Confidence 999999999998764
No 7
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.86 E-value=2.1e-21 Score=199.59 Aligned_cols=209 Identities=21% Similarity=0.316 Sum_probs=143.9
Q ss_pred CCCCCCcccccCCCCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhC------CeE
Q 009072 133 SSTQQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLG------ARL 206 (544)
Q Consensus 133 ~~~~~lW~eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg------~~v 206 (544)
.....+|+++|+|+++++++|+++.++.+..++.. +.. +++||+||||+|||++|+++|++++ ..+
T Consensus 21 ~~~~~~~~~k~~p~~~~~i~g~~~~~~~l~~~l~~------~~~--~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~ 92 (353)
T 1sxj_D 21 SLAQQPWVEKYRPKNLDEVTAQDHAVTVLKKTLKS------ANL--PHMLFYGPPGTGKTSTILALTKELYGPDLMKSRI 92 (353)
T ss_dssp -----CHHHHTCCSSTTTCCSCCTTHHHHHHHTTC------TTC--CCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSE
T ss_pred cccCccHHHhcCCCCHHHhhCCHHHHHHHHHHHhc------CCC--CEEEEECCCCCCHHHHHHHHHHHhCCCcccccce
Confidence 34567999999999999999999999999888754 433 3499999999999999999999864 457
Q ss_pred EEEeCCCchhhhhhhhccccCcccccchHHHHHHHHHHHhhcCCCCCC----CCCCCCceEEEEecCCCCCchhHHHHHH
Q 009072 207 YEWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSI----PGESKSSAILLIDDLPVTNGRTAFERLR 282 (544)
Q Consensus 207 iei~~s~~~~~~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~----~~~~~~~~vIlIDEid~l~~~~~~~~~~ 282 (544)
+++++++.. +. ..+.+.+............. ......+.||+|||++.+... .+
T Consensus 93 ~~~~~~~~~-----------~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~-----~~ 150 (353)
T 1sxj_D 93 LELNASDER-----------GI------SIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTAD-----AQ 150 (353)
T ss_dssp EEECSSSCC-----------CH------HHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHH-----HH
T ss_pred EEEcccccc-----------ch------HHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCHH-----HH
Confidence 788766521 11 11111121111110000000 000134679999999998653 23
Q ss_pred HHHHHHHhcCCCc-EEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHH
Q 009072 283 QCLLLLVRSTHIP-TAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQI 361 (544)
Q Consensus 283 ~~L~~~~~~~~~p-iIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~l 361 (544)
+.|+++++..... .++++++.. ...++++.+| +..+.|.|++.+++..+|..++..+++.++++++
T Consensus 151 ~~Ll~~le~~~~~~~~il~~~~~-----------~~l~~~l~sR--~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l 217 (353)
T 1sxj_D 151 SALRRTMETYSGVTRFCLICNYV-----------TRIIDPLASQ--CSKFRFKALDASNAIDRLRFISEQENVKCDDGVL 217 (353)
T ss_dssp HHHHHHHHHTTTTEEEEEEESCG-----------GGSCHHHHHH--SEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHH
T ss_pred HHHHHHHHhcCCCceEEEEeCch-----------hhCcchhhcc--CceEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 4566666654433 333333311 1122455555 7799999999999999999999999999999999
Q ss_pred HHHHHHcCCcHHHHHHHHHHhcc
Q 009072 362 DLVAQASGGDIRQAITSLQFSSL 384 (544)
Q Consensus 362 ~~Ia~~s~GDiR~aIn~Lq~~~~ 384 (544)
+.|++.++||+|.+++.|+.++.
T Consensus 218 ~~l~~~~~G~~r~~~~~l~~~~~ 240 (353)
T 1sxj_D 218 ERILDISAGDLRRGITLLQSASK 240 (353)
T ss_dssp HHHHHHTSSCHHHHHHHHHHTHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHH
Confidence 99999999999999999998765
No 8
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.86 E-value=6.2e-21 Score=193.42 Aligned_cols=203 Identities=18% Similarity=0.351 Sum_probs=149.1
Q ss_pred CCCCcccccCCCCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHh-----CCeEEEE
Q 009072 135 TQQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL-----GARLYEW 209 (544)
Q Consensus 135 ~~~lW~eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~el-----g~~viei 209 (544)
...+|+++|+|.++++++|++..++.+..|+.. +..+ + ++|+||||+|||++|+.+|+++ +..++++
T Consensus 7 ~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~------~~~~-~-~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~ 78 (323)
T 1sxj_B 7 LQLPWVEKYRPQVLSDIVGNKETIDRLQQIAKD------GNMP-H-MIISGMPGIGKTTSVHCLAHELLGRSYADGVLEL 78 (323)
T ss_dssp CCCCHHHHTCCSSGGGCCSCTHHHHHHHHHHHS------CCCC-C-EEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEE
T ss_pred ccCcHHHhcCCCCHHHHHCCHHHHHHHHHHHHc------CCCC-e-EEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEe
Confidence 357899999999999999999999999999865 4443 3 9999999999999999999996 3457777
Q ss_pred eCCCchhhhhhhhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHHHHH
Q 009072 210 DTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLV 289 (544)
Q Consensus 210 ~~s~~~~~~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~~~ 289 (544)
++++.. + ...+++.+......... . ..+++.||+|||++.+... ..+.|..++
T Consensus 79 ~~~~~~-----------~------~~~i~~~~~~~~~~~~~---~--~~~~~~viiiDe~~~l~~~-----~~~~L~~~l 131 (323)
T 1sxj_B 79 NASDDR-----------G------IDVVRNQIKHFAQKKLH---L--PPGKHKIVILDEADSMTAG-----AQQALRRTM 131 (323)
T ss_dssp CTTSCC-----------S------HHHHHTHHHHHHHBCCC---C--CTTCCEEEEEESGGGSCHH-----HHHTTHHHH
T ss_pred cCcccc-----------C------hHHHHHHHHHHHhcccc---C--CCCCceEEEEECcccCCHH-----HHHHHHHHH
Confidence 765421 1 13344444443311110 0 0134789999999998653 234566666
Q ss_pred hcCCCcEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcC
Q 009072 290 RSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASG 369 (544)
Q Consensus 290 ~~~~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~l~~Ia~~s~ 369 (544)
+......++|++.... . ..++++.+| |..+.|.|++.+++..+|..++..+++.+++++++.|++.++
T Consensus 132 e~~~~~~~~il~~~~~-------~---~l~~~l~sr--~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 199 (323)
T 1sxj_B 132 ELYSNSTRFAFACNQS-------N---KIIEPLQSQ--CAILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAE 199 (323)
T ss_dssp HHTTTTEEEEEEESCG-------G---GSCHHHHTT--SEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHT
T ss_pred hccCCCceEEEEeCCh-------h---hchhHHHhh--ceEEeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 6544334444332110 1 112444454 789999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHhcc
Q 009072 370 GDIRQAITSLQFSSL 384 (544)
Q Consensus 370 GDiR~aIn~Lq~~~~ 384 (544)
||+|.+++.|+.++.
T Consensus 200 G~~r~a~~~l~~~~~ 214 (323)
T 1sxj_B 200 GDMRQAINNLQSTVA 214 (323)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999998874
No 9
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.86 E-value=8.4e-21 Score=201.25 Aligned_cols=200 Identities=23% Similarity=0.319 Sum_probs=148.8
Q ss_pred CCCcccccCCCCcchhccChHHH---HHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCC
Q 009072 136 QQLWAEKYKPRSLEELAVQRKKV---EEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTP 212 (544)
Q Consensus 136 ~~lW~eky~P~~~~dLv~~~~~~---~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s 212 (544)
..+|.++|+|+++++++|++..+ ..+..++.. +.. +.+||+|||||||||+|+++|+.++..++.+++.
T Consensus 13 ~~pla~r~rP~~l~~ivGq~~~~~~~~~L~~~i~~------~~~--~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~ 84 (447)
T 3pvs_A 13 FQPLAARMRPENLAQYIGQQHLLAAGKPLPRAIEA------GHL--HSMILWGPPGTGKTTLAEVIARYANADVERISAV 84 (447)
T ss_dssp -CCHHHHTCCCSTTTCCSCHHHHSTTSHHHHHHHH------TCC--CEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETT
T ss_pred cCChHHHhCCCCHHHhCCcHHHHhchHHHHHHHHc------CCC--cEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEec
Confidence 36899999999999999999999 778887776 444 6899999999999999999999999999999864
Q ss_pred CchhhhhhhhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHHHHHhcC
Q 009072 213 TPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRST 292 (544)
Q Consensus 213 ~~~~~~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~~~~~~ 292 (544)
. .+. ..++..+..+..... ..++.||||||++.+... .++.|+..++.+
T Consensus 85 ~------------~~~------~~ir~~~~~a~~~~~--------~~~~~iLfIDEI~~l~~~-----~q~~LL~~le~~ 133 (447)
T 3pvs_A 85 T------------SGV------KEIREAIERARQNRN--------AGRRTILFVDEVHRFNKS-----QQDAFLPHIEDG 133 (447)
T ss_dssp T------------CCH------HHHHHHHHHHHHHHH--------TTCCEEEEEETTTCC-----------CCHHHHHTT
T ss_pred c------------CCH------HHHHHHHHHHHHhhh--------cCCCcEEEEeChhhhCHH-----HHHHHHHHHhcC
Confidence 3 111 344555555443211 134789999999998643 234577777775
Q ss_pred CCcEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHH-------hCCCCCHHHHHHHH
Q 009072 293 HIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQ-------EQYSLSTEQIDLVA 365 (544)
Q Consensus 293 ~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~-------e~~~i~~~~l~~Ia 365 (544)
.. +++.+++.+. ......++++| +.++.|.+++.+++..+|.+++.. +++.+++++++.|+
T Consensus 134 ~v-~lI~att~n~---------~~~l~~aL~sR--~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~ 201 (447)
T 3pvs_A 134 TI-TFIGATTENP---------SFELNSALLSR--ARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIA 201 (447)
T ss_dssp SC-EEEEEESSCG---------GGSSCHHHHTT--EEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHH
T ss_pred ce-EEEecCCCCc---------ccccCHHHhCc--eeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHH
Confidence 43 2333332111 11122566665 789999999999999999999987 55779999999999
Q ss_pred HHcCCcHHHHHHHHHHhccCC
Q 009072 366 QASGGDIRQAITSLQFSSLKQ 386 (544)
Q Consensus 366 ~~s~GDiR~aIn~Lq~~~~~~ 386 (544)
..++||+|.++|.|+.++...
T Consensus 202 ~~~~Gd~R~lln~Le~a~~~a 222 (447)
T 3pvs_A 202 ELVNGDARRALNTLEMMADMA 222 (447)
T ss_dssp HHHCSCHHHHHHHHHHHHHHS
T ss_pred HHCCCCHHHHHHHHHHHHHhc
Confidence 999999999999999987643
No 10
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.86 E-value=4.4e-20 Score=175.91 Aligned_cols=203 Identities=22% Similarity=0.397 Sum_probs=146.0
Q ss_pred CCCcccccCCCCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHh-----CCeEEEEe
Q 009072 136 QQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL-----GARLYEWD 210 (544)
Q Consensus 136 ~~lW~eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~el-----g~~viei~ 210 (544)
-.+|.++|+|.++++++|++..++.+..|+.. +.. +.++|+||||+|||++++.+++++ ...++.++
T Consensus 4 ~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~------~~~--~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~ 75 (226)
T 2chg_A 4 FEIWVEKYRPRTLDEVVGQDEVIQRLKGYVER------KNI--PHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMN 75 (226)
T ss_dssp CCCHHHHTSCSSGGGCCSCHHHHHHHHHHHHT------TCC--CCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEE
T ss_pred hhhHHHhcCCCCHHHHcCcHHHHHHHHHHHhC------CCC--CeEEEECCCCCCHHHHHHHHHHHHhccccccceEEec
Confidence 46899999999999999999999999999875 222 359999999999999999999986 34567776
Q ss_pred CCCchhhhhhhhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHHHHHh
Q 009072 211 TPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVR 290 (544)
Q Consensus 211 ~s~~~~~~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~~~~ 290 (544)
.+... + ...+...+......... ...++.||+|||++.+... ..+.|..+++
T Consensus 76 ~~~~~-----------~------~~~~~~~~~~~~~~~~~------~~~~~~vliiDe~~~l~~~-----~~~~l~~~l~ 127 (226)
T 2chg_A 76 ASDER-----------G------IDVVRHKIKEFARTAPI------GGAPFKIIFLDEADALTAD-----AQAALRRTME 127 (226)
T ss_dssp TTCTT-----------C------HHHHHHHHHHHHTSCCS------TTCSCEEEEEETGGGSCHH-----HHHHHHHHHH
T ss_pred ccccc-----------C------hHHHHHHHHHHhcccCC------CccCceEEEEeChhhcCHH-----HHHHHHHHHH
Confidence 54311 1 12222223322211100 1245789999999998653 2334555555
Q ss_pred cCCCcEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC
Q 009072 291 STHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGG 370 (544)
Q Consensus 291 ~~~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~l~~Ia~~s~G 370 (544)
......++|++.... .. ...++.+| +..+.|+|++.+++..+|..++...+..+++++++.|++.++|
T Consensus 128 ~~~~~~~~i~~~~~~--------~~--~~~~l~~r--~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g 195 (226)
T 2chg_A 128 MYSKSCRFILSCNYV--------SR--IIEPIQSR--CAVFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG 195 (226)
T ss_dssp HTTTTEEEEEEESCG--------GG--SCHHHHTT--SEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT
T ss_pred hcCCCCeEEEEeCCh--------hh--cCHHHHHh--CceeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 544334444433211 01 12344554 6699999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHhccCC
Q 009072 371 DIRQAITSLQFSSLKQ 386 (544)
Q Consensus 371 DiR~aIn~Lq~~~~~~ 386 (544)
|+|.+++.|+.++...
T Consensus 196 ~~r~l~~~l~~~~~~~ 211 (226)
T 2chg_A 196 DFRKAINALQGAAAIG 211 (226)
T ss_dssp CHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHhcC
Confidence 9999999999988653
No 11
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.85 E-value=2.3e-20 Score=192.55 Aligned_cols=214 Identities=16% Similarity=0.218 Sum_probs=153.8
Q ss_pred CCCcccccCCCCcchhccChHHHHHHHHHHHHhhcCCC-----CCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEe
Q 009072 136 QQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSK-----DKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWD 210 (544)
Q Consensus 136 ~~lW~eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~-----g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~ 210 (544)
..+-+++-+..+|+|++|.++.+++|++.+...+..+. |..+++.+|||||||||||++|+++|.+++.+++.++
T Consensus 135 ~~~~~~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~ 214 (405)
T 4b4t_J 135 SLMMVEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVS 214 (405)
T ss_dssp TSCEEECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEE
T ss_pred hhccccCCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEE
Confidence 45567777889999999999999999999877655432 6666799999999999999999999999999999999
Q ss_pred CCCchhhhhhhhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCch---------hHHHHH
Q 009072 211 TPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGR---------TAFERL 281 (544)
Q Consensus 211 ~s~~~~~~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~---------~~~~~~ 281 (544)
.++. ...........++.++..+... .|+||||||+|.+... ....+.
T Consensus 215 ~s~l-----------~sk~vGese~~vr~lF~~Ar~~------------aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~ 271 (405)
T 4b4t_J 215 GAEL-----------VQKYIGEGSRMVRELFVMAREH------------APSIIFMDEIDSIGSTRVEGSGGGDSEVQRT 271 (405)
T ss_dssp GGGG-----------SCSSTTHHHHHHHHHHHHHHHT------------CSEEEEEESSSCCTTSCSCSSSGGGGHHHHH
T ss_pred hHHh-----------hccccchHHHHHHHHHHHHHHh------------CCceEeeecchhhccCCCCCCCCCcHHHHHH
Confidence 8752 2233344567788999988765 3899999999987431 123344
Q ss_pred HHHHHHHHhc--CCCcEEEEEccCCCCCCCCccccchHHHHHHHh--hcCceeEEecCCCHHHHHHHHHHHHHHhCCCCC
Q 009072 282 RQCLLLLVRS--THIPTAVVLTECGKADSVDSTAQSFEELQSILV--DAGARKVALNPITNGSIKRTLSKICRQEQYSLS 357 (544)
Q Consensus 282 ~~~L~~~~~~--~~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~--r~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~ 357 (544)
...|+..++. ...++++|++++.. +..| +++++ |+ ...|.|++|+.++..++|+..+....+. +
T Consensus 272 l~~lL~~lDg~~~~~~V~vIaATNrp-d~LD---------pAllRpGRf-D~~I~i~lPd~~~R~~Il~~~~~~~~l~-~ 339 (405)
T 4b4t_J 272 MLELLNQLDGFETSKNIKIIMATNRL-DILD---------PALLRPGRI-DRKIEFPPPSVAARAEILRIHSRKMNLT-R 339 (405)
T ss_dssp HHHHHHHHHTTTCCCCEEEEEEESCS-SSSC---------HHHHSTTSS-CCEEECCCCCHHHHHHHHHHHHTTSBCC-S
T ss_pred HHHHHHhhhccCCCCCeEEEeccCCh-hhCC---------HhHcCCCcC-ceEEEcCCcCHHHHHHHHHHHhcCCCCC-c
Confidence 4444444442 33456666655332 1111 45554 33 5689999999999999998776654432 2
Q ss_pred HHHHHHHHHHcCC----cHHHHHHHHHHhcc
Q 009072 358 TEQIDLVAQASGG----DIRQAITSLQFSSL 384 (544)
Q Consensus 358 ~~~l~~Ia~~s~G----DiR~aIn~Lq~~~~ 384 (544)
+..++.||+.+.| ||+.+++..-+.+.
T Consensus 340 dvdl~~lA~~t~G~SGADi~~l~~eA~~~Ai 370 (405)
T 4b4t_J 340 GINLRKVAEKMNGCSGADVKGVCTEAGMYAL 370 (405)
T ss_dssp SCCHHHHHHHCCSCCHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 2347888988766 89988887666654
No 12
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.85 E-value=3.9e-20 Score=191.58 Aligned_cols=216 Identities=18% Similarity=0.270 Sum_probs=147.9
Q ss_pred CCcccccCCCCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCCch-
Q 009072 137 QLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPT- 215 (544)
Q Consensus 137 ~lW~eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~~~- 215 (544)
..|.+||+|+++++++|++..++.+..++.. +..+ +.+||+||||+|||++|+.+|+.++........+...
T Consensus 4 ~~l~~k~rp~~~~~~vg~~~~~~~L~~~l~~------~~~~-~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~ 76 (373)
T 1jr3_A 4 QVLARKWRPQTFADVVGQEHVLTALANGLSL------GRIH-HAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVC 76 (373)
T ss_dssp CCHHHHTCCCSTTTSCSCHHHHHHHHHHHHH------TCCC-SEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSS
T ss_pred HHHHHhhCCCchhhccCcHHHHHHHHHHHHh------CCCC-eEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCccc
Confidence 5799999999999999999999999999976 4443 6899999999999999999999986532111111000
Q ss_pred -hhhhhhhccccC---c--ccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHHHHH
Q 009072 216 -IWQEYMHNCKTG---L--EYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLV 289 (544)
Q Consensus 216 -~~~e~l~~~~~g---~--~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~~~ 289 (544)
............ . ......+.++.+++.+.... ..+++.||+|||++.++.. ..+.|..++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--------~~~~~~vliiDe~~~l~~~-----~~~~Ll~~l 143 (373)
T 1jr3_A 77 DNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAP--------ARGRFKVYLIDEVHMLSRH-----SFNALLKTL 143 (373)
T ss_dssp HHHHHHHTSCCSSCEEEETTCSCCSSCHHHHHHHTTSCC--------SSSSSEEEEEECGGGSCHH-----HHHHHHHHH
T ss_pred HHHHHHhccCCCceEEecccccCCHHHHHHHHHHHhhcc--------ccCCeEEEEEECcchhcHH-----HHHHHHHHH
Confidence 000000000000 0 00011133555555443211 1245789999999998643 235577777
Q ss_pred hcCCCcEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcC
Q 009072 290 RSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASG 369 (544)
Q Consensus 290 ~~~~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~l~~Ia~~s~ 369 (544)
+.....+++|+++... ..+ ...+.+| |..+.|.+++.+++..+|..++..+|+.+++++++.|++.++
T Consensus 144 e~~~~~~~~Il~~~~~--------~~l--~~~l~sr--~~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~ 211 (373)
T 1jr3_A 144 EEPPEHVKFLLATTDP--------QKL--PVTILSR--CLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAE 211 (373)
T ss_dssp HSCCSSEEEEEEESCG--------GGS--CHHHHTT--SEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSS
T ss_pred hcCCCceEEEEEeCCh--------HhC--cHHHHhh--eeEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCC
Confidence 7665555555543211 111 2344444 899999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHhcc
Q 009072 370 GDIRQAITSLQFSSL 384 (544)
Q Consensus 370 GDiR~aIn~Lq~~~~ 384 (544)
||+|.+++.++.+..
T Consensus 212 G~~r~~~~~l~~~~~ 226 (373)
T 1jr3_A 212 GSLRDALSLTDQAIA 226 (373)
T ss_dssp SCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999987653
No 13
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.85 E-value=8.6e-20 Score=176.05 Aligned_cols=218 Identities=17% Similarity=0.266 Sum_probs=144.9
Q ss_pred CCCcccccCCCCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCCc-
Q 009072 136 QQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTP- 214 (544)
Q Consensus 136 ~~lW~eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~~- 214 (544)
..+|.++|+|..+.+++|++..++.+..|+.. +..+ +.++|+||||+|||++++.++++++........+..
T Consensus 10 ~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~------~~~~-~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~ 82 (250)
T 1njg_A 10 YQVLARKWRPQTFADVVGQEHVLTALANGLSL------GRIH-HAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGV 82 (250)
T ss_dssp -CCHHHHTCCCSGGGCCSCHHHHHHHHHHHHH------TCCC-SEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSC
T ss_pred HHHHhhccCCccHHHHhCcHHHHHHHHHHHHc------CCCC-eEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcc
Confidence 57899999999999999999999999999976 3333 689999999999999999999988543211111100
Q ss_pred -hhhhhhhhccccC---c--ccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHHHH
Q 009072 215 -TIWQEYMHNCKTG---L--EYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLL 288 (544)
Q Consensus 215 -~~~~e~l~~~~~g---~--~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~~ 288 (544)
............. . ........+..++..+... ....++.+|+|||++.+... .++.|..+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~vlviDe~~~l~~~-----~~~~l~~~ 149 (250)
T 1njg_A 83 CDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYA--------PARGRFKVYLIDEVHMLSRH-----SFNALLKT 149 (250)
T ss_dssp SHHHHHHHTTCCSSEEEEETTCGGGHHHHHHHHHSCCCS--------CSSSSSEEEEEETGGGSCHH-----HHHHHHHH
T ss_pred cHHHHHHhccCCcceEEecCcccccHHHHHHHHHHhhhc--------hhcCCceEEEEECcccccHH-----HHHHHHHH
Confidence 0000000000000 0 0011123344444322110 11245789999999997542 23456666
Q ss_pred HhcCCCcEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHc
Q 009072 289 VRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQAS 368 (544)
Q Consensus 289 ~~~~~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~l~~Ia~~s 368 (544)
++......++|+++... ..+ ...+.+| +..+.|+|++.+++.+++..++..++..+++++++.|++.+
T Consensus 150 l~~~~~~~~~i~~t~~~--------~~~--~~~l~~r--~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~ 217 (250)
T 1njg_A 150 LEEPPEHVKFLLATTDP--------QKL--PVTILSR--CLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAA 217 (250)
T ss_dssp HHSCCTTEEEEEEESCG--------GGS--CHHHHTT--SEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHH
T ss_pred HhcCCCceEEEEEeCCh--------HhC--CHHHHHH--hhhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHc
Confidence 66554444444443211 011 1334444 78999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHhccC
Q 009072 369 GGDIRQAITSLQFSSLK 385 (544)
Q Consensus 369 ~GDiR~aIn~Lq~~~~~ 385 (544)
+|++|.+++.++.++..
T Consensus 218 ~G~~~~~~~~~~~~~~~ 234 (250)
T 1njg_A 218 EGSLRDALSLTDQAIAS 234 (250)
T ss_dssp TTCHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHhc
Confidence 99999999999887653
No 14
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.84 E-value=9e-20 Score=186.73 Aligned_cols=200 Identities=13% Similarity=0.179 Sum_probs=143.1
Q ss_pred CCCCCcccccCCCCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCC
Q 009072 134 STQQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPT 213 (544)
Q Consensus 134 ~~~~lW~eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~ 213 (544)
.....|.++|+|.++++++|++..++++..|+...... +. +...+||+||||||||++|+++|++++.+++.++++.
T Consensus 14 ~~~~~~~~~~~p~~~~~iiG~~~~~~~l~~~l~~~~~~--~~-~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~ 90 (338)
T 3pfi_A 14 SFDETYETSLRPSNFDGYIGQESIKKNLNVFIAAAKKR--NE-CLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPM 90 (338)
T ss_dssp ---------CCCCSGGGCCSCHHHHHHHHHHHHHHHHT--TS-CCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred chhhhhhhccCCCCHHHhCChHHHHHHHHHHHHHHHhc--CC-CCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchh
Confidence 45679999999999999999999999999999886432 22 2367999999999999999999999999999988653
Q ss_pred chhhhhhhhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHHHHHhcCC
Q 009072 214 PTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTH 293 (544)
Q Consensus 214 ~~~~~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~~~~~~~ 293 (544)
.. ....+...+.. . ..+.+|||||++.+... .++.|+..++...
T Consensus 91 ~~-----------------~~~~~~~~~~~---~-----------~~~~vl~lDEi~~l~~~-----~~~~Ll~~l~~~~ 134 (338)
T 3pfi_A 91 IE-----------------KSGDLAAILTN---L-----------SEGDILFIDEIHRLSPA-----IEEVLYPAMEDYR 134 (338)
T ss_dssp CC-----------------SHHHHHHHHHT---C-----------CTTCEEEEETGGGCCHH-----HHHHHHHHHHTSC
T ss_pred cc-----------------chhHHHHHHHh---c-----------cCCCEEEEechhhcCHH-----HHHHHHHHHHhcc
Confidence 11 11233333321 1 24679999999998642 3344555555432
Q ss_pred C------------------cEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHHhCCC
Q 009072 294 I------------------PTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYS 355 (544)
Q Consensus 294 ~------------------piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~ 355 (544)
. ++++|++++.. ..+ ..++++|+ ...+.|.+|+.+++..++.+.+...++.
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~i~atn~~--------~~l--~~~L~~R~-~~~i~l~~~~~~e~~~il~~~~~~~~~~ 203 (338)
T 3pfi_A 135 LDIIIGSGPAAQTIKIDLPKFTLIGATTRA--------GML--SNPLRDRF-GMQFRLEFYKDSELALILQKAALKLNKT 203 (338)
T ss_dssp C---------CCCCCCCCCCCEEEEEESCG--------GGS--CHHHHTTC-SEEEECCCCCHHHHHHHHHHHHHHTTCE
T ss_pred chhhcccCccccceecCCCCeEEEEeCCCc--------ccc--CHHHHhhc-CEEeeCCCcCHHHHHHHHHHHHHhcCCC
Confidence 1 24555544221 111 14555653 4789999999999999999999999999
Q ss_pred CCHHHHHHHHHHcCCcHHHHHHHHHHhc
Q 009072 356 LSTEQIDLVAQASGGDIRQAITSLQFSS 383 (544)
Q Consensus 356 i~~~~l~~Ia~~s~GDiR~aIn~Lq~~~ 383 (544)
+++++++.|+..+.|++|.+.+.++.+.
T Consensus 204 ~~~~~~~~l~~~~~G~~r~l~~~l~~~~ 231 (338)
T 3pfi_A 204 CEEKAALEIAKRSRSTPRIALRLLKRVR 231 (338)
T ss_dssp ECHHHHHHHHHTTTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 9999999999999999999999998753
No 15
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.83 E-value=1.2e-19 Score=187.81 Aligned_cols=215 Identities=13% Similarity=0.168 Sum_probs=151.2
Q ss_pred CCCCcccccCCCCcchhccChHHHHHHHHHHHHhhcCCC-----CCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 009072 135 TQQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSK-----DKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEW 209 (544)
Q Consensus 135 ~~~lW~eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~-----g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei 209 (544)
...+-+++-+..+|+|++|-++.+++|++.+...+..+. |..+++.+|||||||||||++|+++|.+++.+++.+
T Consensus 168 ~~~~~~~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v 247 (437)
T 4b4t_I 168 VSVMKMDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRI 247 (437)
T ss_dssp CCCCEEESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEE
T ss_pred ceeeeeccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEE
Confidence 345667888889999999999999999998877655443 666679999999999999999999999999999999
Q ss_pred eCCCchhhhhhhhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCch---------hHHHH
Q 009072 210 DTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGR---------TAFER 280 (544)
Q Consensus 210 ~~s~~~~~~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~---------~~~~~ 280 (544)
+.++. .+.........++.++..+... .|+||||||+|.+... ....+
T Consensus 248 ~~s~l-----------~sk~vGesek~ir~lF~~Ar~~------------aP~IIfiDEiDai~~~R~~~~~~~~~~~~~ 304 (437)
T 4b4t_I 248 VGSEL-----------IQKYLGDGPRLCRQIFKVAGEN------------APSIVFIDEIDAIGTKRYDSNSGGEREIQR 304 (437)
T ss_dssp ESGGG-----------CCSSSSHHHHHHHHHHHHHHHT------------CSEEEEEEEESSSSCCCSCSSCSSCCHHHH
T ss_pred EHHHh-----------hhccCchHHHHHHHHHHHHHhc------------CCcEEEEehhhhhcccCCCCCCCccHHHHH
Confidence 98752 2233344557788888888755 3899999999987331 12233
Q ss_pred HHHHHHHHHhc--CCCcEEEEEccCCCCCCCCccccchHHHHHHHh--hcCceeEEecCCCHHHHHHHHHHHHHHhCCCC
Q 009072 281 LRQCLLLLVRS--THIPTAVVLTECGKADSVDSTAQSFEELQSILV--DAGARKVALNPITNGSIKRTLSKICRQEQYSL 356 (544)
Q Consensus 281 ~~~~L~~~~~~--~~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~--r~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i 356 (544)
....|+..++. ....+++|++++.... .| +++++ |+ ...|.|+.|+.++...+|+..+....+.
T Consensus 305 ~l~~LL~~lDg~~~~~~ViVIaATNrpd~-LD---------pALlRpGRf-D~~I~v~lPd~~~R~~Il~~~l~~~~l~- 372 (437)
T 4b4t_I 305 TMLELLNQLDGFDDRGDVKVIMATNKIET-LD---------PALIRPGRI-DRKILFENPDLSTKKKILGIHTSKMNLS- 372 (437)
T ss_dssp HHHHHHHHHHHCCCSSSEEEEEEESCSTT-CC---------TTSSCTTTE-EEEECCCCCCHHHHHHHHHHHHTTSCBC-
T ss_pred HHHHHHHHhhCcCCCCCEEEEEeCCChhh-cC---------HHHhcCCce-eEEEEcCCcCHHHHHHHHHHHhcCCCCC-
Confidence 33333333332 2234666666543322 22 23333 22 4579999999999999998777554322
Q ss_pred CHHHHHHHHHHcCC----cHHHHHHHHHHhcc
Q 009072 357 STEQIDLVAQASGG----DIRQAITSLQFSSL 384 (544)
Q Consensus 357 ~~~~l~~Ia~~s~G----DiR~aIn~Lq~~~~ 384 (544)
++..++.||..+.| ||+.+++..-+.+.
T Consensus 373 ~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Ai 404 (437)
T 4b4t_I 373 EDVNLETLVTTKDDLSGADIQAMCTEAGLLAL 404 (437)
T ss_dssp SCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHH
T ss_pred CcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 12247888888665 89988887666664
No 16
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.82 E-value=4.7e-19 Score=185.63 Aligned_cols=215 Identities=15% Similarity=0.197 Sum_probs=149.9
Q ss_pred CCCcccccCCCCcchhccChHHHHHHHHHHHHhhcCCC-----CCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEe
Q 009072 136 QQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSK-----DKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWD 210 (544)
Q Consensus 136 ~~lW~eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~-----g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~ 210 (544)
..+-+++-+..+|+|++|.++.+++|++++...+..+. |..+++.+|||||||||||++|+++|.+++++++.++
T Consensus 168 ~~~~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~ 247 (437)
T 4b4t_L 168 YNMTSFEQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSP 247 (437)
T ss_dssp SSCEEEESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEE
T ss_pred heeeeccCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEe
Confidence 34556666778999999999999999999987665443 6667799999999999999999999999999999998
Q ss_pred CCCchhhhhhhhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCch---------hHHHHH
Q 009072 211 TPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGR---------TAFERL 281 (544)
Q Consensus 211 ~s~~~~~~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~---------~~~~~~ 281 (544)
.++. .+.........++.++..+... .|+||||||+|.+... ....+.
T Consensus 248 ~s~l-----------~sk~~Gese~~ir~~F~~A~~~------------~P~IifiDEiDai~~~R~~~~~~~~~~~~~~ 304 (437)
T 4b4t_L 248 ASGI-----------VDKYIGESARIIREMFAYAKEH------------EPCIIFMDEVDAIGGRRFSEGTSADREIQRT 304 (437)
T ss_dssp GGGT-----------CCSSSSHHHHHHHHHHHHHHHS------------CSEEEEEECCCSSSCCCSSSCCSSTTHHHHH
T ss_pred hhhh-----------ccccchHHHHHHHHHHHHHHhc------------CCceeeeecccccccccccCCCCcchHHHHH
Confidence 8752 2223334556788888887654 4899999999987431 123334
Q ss_pred HHHHHHHHhc--CCCcEEEEEccCCCCCCCCccccchHHHHHHHhhcC-ceeEEecCCCHHHHHHHHHHHHHHhCCCCCH
Q 009072 282 RQCLLLLVRS--THIPTAVVLTECGKADSVDSTAQSFEELQSILVDAG-ARKVALNPITNGSIKRTLSKICRQEQYSLST 358 (544)
Q Consensus 282 ~~~L~~~~~~--~~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~-~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~ 358 (544)
...|+..++. ....+++|++++.... .| ++++++.| ...|.|+.|+......+|+..+...... ++
T Consensus 305 l~~lL~~lDg~~~~~~vivI~ATNrp~~-LD---------pAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~-~d 373 (437)
T 4b4t_L 305 LMELLTQMDGFDNLGQTKIIMATNRPDT-LD---------PALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKT-GE 373 (437)
T ss_dssp HHHHHHHHHSSSCTTSSEEEEEESSTTS-SC---------TTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBC-SC
T ss_pred HHHHHHHhhcccCCCCeEEEEecCCchh-hC---------HHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCC-cc
Confidence 4444444432 2234555555533221 12 23333212 4579999999999999998777654432 23
Q ss_pred HHHHHHHHHcCC----cHHHHHHHHHHhcc
Q 009072 359 EQIDLVAQASGG----DIRQAITSLQFSSL 384 (544)
Q Consensus 359 ~~l~~Ia~~s~G----DiR~aIn~Lq~~~~ 384 (544)
..++.|+..+.| ||+.+++..-+.+.
T Consensus 374 ~dl~~lA~~t~G~sGADi~~l~~eA~~~ai 403 (437)
T 4b4t_L 374 FDFEAAVKMSDGFNGADIRNCATEAGFFAI 403 (437)
T ss_dssp CCHHHHHHTCCSCCHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 347888888766 89998886655554
No 17
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.82 E-value=2.1e-19 Score=188.03 Aligned_cols=214 Identities=14% Similarity=0.154 Sum_probs=150.6
Q ss_pred CCCcccccCCCCcchhccChHHHHHHHHHHHHhhcCCC-----CCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEe
Q 009072 136 QQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSK-----DKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWD 210 (544)
Q Consensus 136 ~~lW~eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~-----g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~ 210 (544)
..+-+++-++.+|+|++|.++.+++|++.+...+..+. |..+++.+|||||||||||++|+++|.+++.+++.++
T Consensus 168 ~~~~~~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~ 247 (434)
T 4b4t_M 168 KAMEVDEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLA 247 (434)
T ss_dssp SCCEEESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEE
T ss_pred hhcccCCCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEe
Confidence 44567777889999999999999999998877665443 6666799999999999999999999999999999999
Q ss_pred CCCchhhhhhhhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCch---------hHHHHH
Q 009072 211 TPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGR---------TAFERL 281 (544)
Q Consensus 211 ~s~~~~~~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~---------~~~~~~ 281 (544)
.++. .+.........++.++..+...+ |+||||||+|.+... ....+.
T Consensus 248 ~s~l-----------~~~~vGese~~ir~lF~~A~~~a------------P~IifiDEiDal~~~R~~~~~~~~~~~~~~ 304 (434)
T 4b4t_M 248 APQL-----------VQMYIGEGAKLVRDAFALAKEKA------------PTIIFIDELDAIGTKRFDSEKSGDREVQRT 304 (434)
T ss_dssp GGGG-----------CSSCSSHHHHHHHHHHHHHHHHC------------SEEEEEECTHHHHCCCSSGGGGTTHHHHHH
T ss_pred hhhh-----------hhcccchHHHHHHHHHHHHHhcC------------CeEEeecchhhhhhccCCCCCCCchHHHHH
Confidence 8752 22233345577888888887653 899999999976221 112233
Q ss_pred HHHHHHHHhc--CCCcEEEEEccCCCCCCCCccccchHHHHHHHh--hcCceeEEecCCCHHHHHHHHHHHHHHhCCCCC
Q 009072 282 RQCLLLLVRS--THIPTAVVLTECGKADSVDSTAQSFEELQSILV--DAGARKVALNPITNGSIKRTLSKICRQEQYSLS 357 (544)
Q Consensus 282 ~~~L~~~~~~--~~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~--r~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~ 357 (544)
...|+..++. +...+++|++++.... .| +++++ |+ ...|.|+.|+.++..++|+..+....+. +
T Consensus 305 ~~~lL~~ldg~~~~~~ViVIaaTNrp~~-LD---------~AllRpGRf-D~~I~i~lPd~~~R~~Il~~~~~~~~~~-~ 372 (434)
T 4b4t_M 305 MLELLNQLDGFSSDDRVKVLAATNRVDV-LD---------PALLRSGRL-DRKIEFPLPSEDSRAQILQIHSRKMTTD-D 372 (434)
T ss_dssp HHHHHHHHTTSCSSCSSEEEEECSSCCC-CC---------TTTCSTTSE-EEEEECCCCCHHHHHHHHHHHHHHSCBC-S
T ss_pred HHHHHHHhhccCCCCCEEEEEeCCCchh-cC---------HhHhcCCce-eEEEEeCCcCHHHHHHHHHHHhcCCCCC-C
Confidence 3334444443 2234566655533322 22 23333 22 5679999999999999998887765432 1
Q ss_pred HHHHHHHHHHcCC----cHHHHHHHHHHhcc
Q 009072 358 TEQIDLVAQASGG----DIRQAITSLQFSSL 384 (544)
Q Consensus 358 ~~~l~~Ia~~s~G----DiR~aIn~Lq~~~~ 384 (544)
+..++.||+.+.| ||+.+++..-+.+.
T Consensus 373 dvdl~~lA~~t~G~sGADi~~l~~eA~~~a~ 403 (434)
T 4b4t_M 373 DINWQELARSTDEFNGAQLKAVTVEAGMIAL 403 (434)
T ss_dssp CCCHHHHHHHCSSCCHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 2237888888766 89998886655554
No 18
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.82 E-value=4.3e-19 Score=185.33 Aligned_cols=213 Identities=14% Similarity=0.162 Sum_probs=148.4
Q ss_pred CCcccccCCCCcchhccChHHHHHHHHHHHHhhcCCC-----CCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeC
Q 009072 137 QLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSK-----DKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDT 211 (544)
Q Consensus 137 ~lW~eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~-----g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~ 211 (544)
.+=+++-+..+|+|++|.++.+++|++++...+..+. |..+++.+|||||||||||++|+++|++++.+++.++.
T Consensus 197 ~m~v~e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~ 276 (467)
T 4b4t_H 197 MMTVEEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIG 276 (467)
T ss_dssp CCEEESSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEG
T ss_pred eeeecCCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEh
Confidence 3456676778999999999999999998876544332 65666999999999999999999999999999999987
Q ss_pred CCchhhhhhhhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCch---------hHHHHHH
Q 009072 212 PTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGR---------TAFERLR 282 (544)
Q Consensus 212 s~~~~~~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~---------~~~~~~~ 282 (544)
++. .+.........++.++..+... .|+||||||+|.+... ....+..
T Consensus 277 s~L-----------~sk~vGesek~ir~lF~~Ar~~------------aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l 333 (467)
T 4b4t_H 277 SEL-----------VQKYVGEGARMVRELFEMARTK------------KACIIFFDEIDAVGGARFDDGAGGDNEVQRTM 333 (467)
T ss_dssp GGG-----------CCCSSSHHHHHHHHHHHHHHHT------------CSEEEEEECCTTTSBCCSSSSCGGGGHHHHHH
T ss_pred HHh-----------hcccCCHHHHHHHHHHHHHHhc------------CCceEeecccccccccccCcCCCccHHHHHHH
Confidence 652 2233344557788888888755 3899999999987431 1122233
Q ss_pred HHHHHHHhc--CCCcEEEEEccCCCCCCCCccccchHHHHHHHh--hcCceeEEecCCCHHHHHHHHHHHHHHhCCCCCH
Q 009072 283 QCLLLLVRS--THIPTAVVLTECGKADSVDSTAQSFEELQSILV--DAGARKVALNPITNGSIKRTLSKICRQEQYSLST 358 (544)
Q Consensus 283 ~~L~~~~~~--~~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~--r~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~ 358 (544)
..|+..++. ...++++|++++.. +..| +++++ |+ ...|.|+.|+.++..++|+..+....+. .+
T Consensus 334 ~~lL~~lDg~~~~~~ViVIaATNrp-d~LD---------pALlRpGRF-D~~I~i~lPd~~~R~~Ilk~~l~~~~l~-~d 401 (467)
T 4b4t_H 334 LELITQLDGFDPRGNIKVMFATNRP-NTLD---------PALLRPGRI-DRKVEFSLPDLEGRANIFRIHSKSMSVE-RG 401 (467)
T ss_dssp HHHHHHHHSSCCTTTEEEEEECSCT-TSBC---------HHHHSTTTC-CEEECCCCCCHHHHHHHHHHHHTTSCBC-SS
T ss_pred HHHHHHhhccCCCCcEEEEeCCCCc-ccCC---------hhhhccccc-cEEEEeCCcCHHHHHHHHHHHhcCCCCC-CC
Confidence 233333332 23356666665332 1111 34554 43 6789999999999999998776554332 12
Q ss_pred HHHHHHHHHcCC----cHHHHHHHHHHhcc
Q 009072 359 EQIDLVAQASGG----DIRQAITSLQFSSL 384 (544)
Q Consensus 359 ~~l~~Ia~~s~G----DiR~aIn~Lq~~~~ 384 (544)
..++.|++.+.| ||+.+++..-+.+.
T Consensus 402 vdl~~LA~~T~GfSGADI~~l~~eAa~~Ai 431 (467)
T 4b4t_H 402 IRWELISRLCPNSTGAELRSVCTEAGMFAI 431 (467)
T ss_dssp CCHHHHHHHCCSCCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 247788888776 89988876655554
No 19
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.81 E-value=5.8e-19 Score=179.75 Aligned_cols=214 Identities=12% Similarity=0.114 Sum_probs=151.6
Q ss_pred CCCcccccCCCCcchhccChHHHHHHHHHHHHhhcCC----CCCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeC
Q 009072 136 QQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDS----KDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDT 211 (544)
Q Consensus 136 ~~lW~eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~----~g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~ 211 (544)
...|++++++.+|++++|.+..+++|++++......+ .+..+++.+||+||||||||++|+++|++++.+++.++.
T Consensus 5 ~~~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~ 84 (322)
T 3eie_A 5 FTAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSS 84 (322)
T ss_dssp -CCSEEECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEH
T ss_pred ccceeecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEch
Confidence 3568999999999999999999999999886544322 133345899999999999999999999999999999986
Q ss_pred CCchhhhhhhhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchh------HHHHHHHHH
Q 009072 212 PTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRT------AFERLRQCL 285 (544)
Q Consensus 212 s~~~~~~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~------~~~~~~~~L 285 (544)
++.. +.........++.++..+... .|.||||||+|.+.... ...++.+.|
T Consensus 85 ~~l~-----------~~~~g~~~~~~~~~f~~a~~~------------~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l 141 (322)
T 3eie_A 85 SDLV-----------SKWMGESEKLVKQLFAMAREN------------KPSIIFIDQVDALTGTRGEGESEASRRIKTEL 141 (322)
T ss_dssp HHHH-----------TTTGGGHHHHHHHHHHHHHHT------------SSEEEEEECGGGGSCC------CCTHHHHHHH
T ss_pred HHHh-----------hcccchHHHHHHHHHHHHHhc------------CCeEEEechhhhhhccCCCCcchHHHHHHHHH
Confidence 5421 111122334566667666543 47899999999875421 123444445
Q ss_pred HHHHhc---CCCcEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHH
Q 009072 286 LLLVRS---THIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQID 362 (544)
Q Consensus 286 ~~~~~~---~~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~l~ 362 (544)
+..++. ....+++|++++.. ..+ ..++++|+ ...+.|.+|+.++...+|+..+...+..+++..++
T Consensus 142 l~~l~~~~~~~~~v~vi~atn~~--------~~l--d~al~~Rf-~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~ 210 (322)
T 3eie_A 142 LVQMNGVGNDSQGVLVLGATNIP--------WQL--DSAIRRRF-ERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYR 210 (322)
T ss_dssp HHHHGGGGTSCCCEEEEEEESCG--------GGS--CHHHHHHC-CEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHH
T ss_pred HHHhccccccCCceEEEEecCCh--------hhC--CHHHHccc-CeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHH
Confidence 544442 33456666555221 011 14555554 56889999999999999999988888888999999
Q ss_pred HHHHHcCC----cHHHHHHHHHHhc
Q 009072 363 LVAQASGG----DIRQAITSLQFSS 383 (544)
Q Consensus 363 ~Ia~~s~G----DiR~aIn~Lq~~~ 383 (544)
.|+..+.| ||+.+++...+.+
T Consensus 211 ~la~~t~g~sg~di~~l~~~a~~~a 235 (322)
T 3eie_A 211 TLGAMTEGYSGSDIAVVVKDALMQP 235 (322)
T ss_dssp HHHHTTTTCCHHHHHHHHHHHTTHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 99999887 6776665554443
No 20
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.81 E-value=9.4e-19 Score=181.13 Aligned_cols=235 Identities=17% Similarity=0.146 Sum_probs=152.2
Q ss_pred CCCcccccCCCC-cchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhCC--eEEEEeCC
Q 009072 136 QQLWAEKYKPRS-LEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGA--RLYEWDTP 212 (544)
Q Consensus 136 ~~lW~eky~P~~-~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg~--~viei~~s 212 (544)
...+.++++|.. +++++|++..++.+..++..... +..+++.+||+||||||||++|+++|++++. +++.++.+
T Consensus 30 ~l~l~~~~~p~~~~~~ivG~~~~~~~l~~l~~~~~~---~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~ 106 (368)
T 3uk6_A 30 GLGLDDALEPRQASQGMVGQLAARRAAGVVLEMIRE---GKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGS 106 (368)
T ss_dssp SCCBCTTSCBCSEETTEESCHHHHHHHHHHHHHHHT---TCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGG
T ss_pred ccCcccccCcCcchhhccChHHHHHHHHHHHHHHHc---CCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccch
Confidence 345678999998 99999999998887665544432 4444579999999999999999999999985 55666543
Q ss_pred Cchh--------hhhhhhc-------------------------------cccCcccccchHHHHHHHHHHHhhcCCCCC
Q 009072 213 TPTI--------WQEYMHN-------------------------------CKTGLEYTSKLDEFENFVERIRRYGSTSPS 253 (544)
Q Consensus 213 ~~~~--------~~e~l~~-------------------------------~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~ 253 (544)
.... ..+.+.. ...+. .......++..+..+.......
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~-- 183 (368)
T 3uk6_A 107 EIFSLEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGD-TGEIKSEVREQINAKVAEWREE-- 183 (368)
T ss_dssp GGSCSSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC--------CHHHHHHHHHHHHHHHHH--
T ss_pred hhhhcccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCc-ccccHHHHHHHHHHHHHHhhhh--
Confidence 2110 0000000 00000 0011233444443332110000
Q ss_pred CCCCCCCceEEEEecCCCCCchhHHHHHHHHHHHHHhcCCCcEEEEEccCCCCCCCCc-cccchHHHHHHHhhcCceeEE
Q 009072 254 IPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPTAVVLTECGKADSVDS-TAQSFEELQSILVDAGARKVA 332 (544)
Q Consensus 254 ~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~~~~~~~~piIiI~t~~~~~~~~d~-~~~~l~~l~~ll~r~~~~~I~ 332 (544)
......|.||||||++.+.. ..++.|+..++....++++++++......... ........+++++| +..+.
T Consensus 184 -g~~~~~~~vl~IDEi~~l~~-----~~~~~L~~~le~~~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR--~~~i~ 255 (368)
T 3uk6_A 184 -GKAEIIPGVLFIDEVHMLDI-----ESFSFLNRALESDMAPVLIMATNRGITRIRGTSYQSPHGIPIDLLDR--LLIVS 255 (368)
T ss_dssp -TC---CBCEEEEESGGGSBH-----HHHHHHHHHTTCTTCCEEEEEESCSEEECBTSSCEEETTCCHHHHTT--EEEEE
T ss_pred -ccccccCceEEEhhccccCh-----HHHHHHHHHhhCcCCCeeeeecccceeeeeccCCCCcccCCHHHHhh--ccEEE
Confidence 00001257999999999864 33456778888888888877765221000000 00111112455565 77899
Q ss_pred ecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcC-CcHHHHHHHHHHhcc
Q 009072 333 LNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASG-GDIRQAITSLQFSSL 384 (544)
Q Consensus 333 f~p~s~~~i~~~L~~i~~~e~~~i~~~~l~~Ia~~s~-GDiR~aIn~Lq~~~~ 384 (544)
|+||+.+++..+|..++..+++.+++++++.|+..+. ||+|.+++.|+.++.
T Consensus 256 ~~~~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~ 308 (368)
T 3uk6_A 256 TTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASL 308 (368)
T ss_dssp ECCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred ecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999 999999999998764
No 21
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.81 E-value=1.1e-18 Score=182.40 Aligned_cols=214 Identities=14% Similarity=0.123 Sum_probs=151.2
Q ss_pred CCCcccccCCCCcchhccChHHHHHHHHHHHHhhcCCC----CCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeC
Q 009072 136 QQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSK----DKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDT 211 (544)
Q Consensus 136 ~~lW~eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~----g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~ 211 (544)
...|+++|+|.+|++++|++..++.|..++......+. ...+.+.+||+||||||||++|+++|++++.+++.+++
T Consensus 102 ~~~~~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~ 181 (389)
T 3vfd_A 102 MNEIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISA 181 (389)
T ss_dssp GGTTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECS
T ss_pred HhhhhccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeH
Confidence 45699999999999999999999999999866543211 11234799999999999999999999999999999998
Q ss_pred CCchhhhhhhhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCch------hHHHHHHHHH
Q 009072 212 PTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGR------TAFERLRQCL 285 (544)
Q Consensus 212 s~~~~~~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~------~~~~~~~~~L 285 (544)
++... .........+..++..+... .+.||||||+|.+... ....++++.|
T Consensus 182 ~~l~~-----------~~~g~~~~~~~~~~~~a~~~------------~~~il~iDEid~l~~~~~~~~~~~~~~~~~~l 238 (389)
T 3vfd_A 182 ASLTS-----------KYVGEGEKLVRALFAVAREL------------QPSIIFIDQVDSLLCERREGEHDASRRLKTEF 238 (389)
T ss_dssp CCC------------------CHHHHHHHHHHHHHS------------SSEEEEEETGGGGC--------CTHHHHHHHH
T ss_pred HHhhc-----------cccchHHHHHHHHHHHHHhc------------CCeEEEEECchhhcccCCCccchHHHHHHHHH
Confidence 76321 11112224456666666533 3689999999987332 1123444444
Q ss_pred HHHHhc----CCCcEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHH
Q 009072 286 LLLVRS----THIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQI 361 (544)
Q Consensus 286 ~~~~~~----~~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~l 361 (544)
+..++. ....+++|++++.. ..+ ..++++|+ ...|.|.+|+.++...+|..++...+..++++.+
T Consensus 239 l~~l~~~~~~~~~~v~vI~atn~~--------~~l--~~~l~~R~-~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~ 307 (389)
T 3vfd_A 239 LIEFDGVQSAGDDRVLVMGATNRP--------QEL--DEAVLRRF-IKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKEL 307 (389)
T ss_dssp HHHHHHHC-----CEEEEEEESCG--------GGC--CHHHHTTC-CEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHH
T ss_pred HHHhhcccccCCCCEEEEEecCCc--------hhc--CHHHHcCc-ceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 444432 22346666655221 011 14555553 3579999999999999999999998999999999
Q ss_pred HHHHHHcCCcHHHHHHHHHHhc
Q 009072 362 DLVAQASGGDIRQAITSLQFSS 383 (544)
Q Consensus 362 ~~Ia~~s~GDiR~aIn~Lq~~~ 383 (544)
..|+..+.|+.+.+|+.|.-.+
T Consensus 308 ~~la~~~~g~~~~~l~~L~~~a 329 (389)
T 3vfd_A 308 AQLARMTDGYSGSDLTALAKDA 329 (389)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHH
Confidence 9999999999998888875544
No 22
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.80 E-value=1e-20 Score=211.39 Aligned_cols=278 Identities=13% Similarity=0.170 Sum_probs=172.5
Q ss_pred cccccccccccccCCccCcccccccccccccccccc------CCCCCC---hhhhhhhhhhhhhccCcccccCCCCCCCC
Q 009072 57 KKNVEHFLTPSRFEGLVNPKRDLALGSSSRQQLWTN------KNKPCS---LEEHAIQKENVGRFLTPSRFEGLVNPDHD 127 (544)
Q Consensus 57 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~---~~~i~~~~ed~~~~l~~~~i~~~~~~~~~ 127 (544)
..+||+..+|..|+||+|++++.++.+|...++... ...... ...+.++++||..++. .+... ....
T Consensus 391 ~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i~~~~~~~~~e~~~~~~v~~~Df~~Al~--~~~ps--~~r~ 466 (806)
T 3cf2_A 391 ADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALS--QSNPS--ALRE 466 (806)
T ss_dssp CTTCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHGGGTCCCCSHHHHHHCEECTTHHHHHHS--SSSCC--CCCC
T ss_pred CcccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccccccccccccchhhhccceeeHHHHHHHHH--hCCCc--cccc
Confidence 356899999999999999999999998877664221 111111 2345677889988887 44111 1000
Q ss_pred CCCcCCCCCCCcccccCCCCcchhccChHHHHHHHHHHHHhhcCCC-----CCCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 009072 128 SASASSSTQQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSK-----DKFSTNVLVITGQAGVGKTATVRQIASHL 202 (544)
Q Consensus 128 ~~~~~~~~~~lW~eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~-----g~~~~~~lLL~GPpG~GKTtla~~lA~el 202 (544)
. ....+..+++++.|.++.+++|++.+......+. |..+++.+|||||||||||++|+++|.++
T Consensus 467 ~-----------~~~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~ 535 (806)
T 3cf2_A 467 T-----------VVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC 535 (806)
T ss_dssp C-----------CCBCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTT
T ss_pred c-----------cccCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHh
Confidence 0 1234457889999999999999888765444322 55566899999999999999999999999
Q ss_pred CCeEEEEeCCCchhhhhhhhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCch-------
Q 009072 203 GARLYEWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGR------- 275 (544)
Q Consensus 203 g~~viei~~s~~~~~~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~------- 275 (544)
+.+++.+..++. .+.........++.++..++.. .|+||||||+|.+...
T Consensus 536 ~~~f~~v~~~~l-----------~s~~vGese~~vr~lF~~Ar~~------------~P~IifiDEiDsl~~~R~~~~~~ 592 (806)
T 3cf2_A 536 QANFISIKGPEL-----------LTMWFGESEANVREIFDKARQA------------APCVLFFDELDSIAKARGGNIGD 592 (806)
T ss_dssp TCEEEECCHHHH-----------HTTTCSSCHHHHHHHHHHHHTT------------CSEEEECSCGGGCC---------
T ss_pred CCceEEeccchh-----------hccccchHHHHHHHHHHHHHHc------------CCceeechhhhHHhhccCCCCCC
Confidence 999998876541 1223334557889999988754 3899999999987432
Q ss_pred --hHHHHHHHHHHHHHhc--CCCcEEEEEccCCCCCCCCccccchHHHHHHHh--hcCceeEEecCCCHHHHHHHHHHHH
Q 009072 276 --TAFERLRQCLLLLVRS--THIPTAVVLTECGKADSVDSTAQSFEELQSILV--DAGARKVALNPITNGSIKRTLSKIC 349 (544)
Q Consensus 276 --~~~~~~~~~L~~~~~~--~~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~--r~~~~~I~f~p~s~~~i~~~L~~i~ 349 (544)
...+++.+.|+..++. ....+++|++++ ..+..| +++++ |+ ...|.|+.|+.++..++|+..+
T Consensus 593 ~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN-~p~~lD---------~AllRpgRf-d~~i~v~lPd~~~R~~il~~~l 661 (806)
T 3cf2_A 593 GGGAADRVINQILTEMDGMSTKKNVFIIGATN-RPDIID---------PAILRPGRL-DQLIYIPLPDEKSRVAILKANL 661 (806)
T ss_dssp -----CHHHHHHHHHHHSSCSSSSEEEECC-C-CSSSSC---------HHHHSTTTS-CCEEEC-----CHHHHTTTTTS
T ss_pred CchHHHHHHHHHHHHHhCCCCCCCEEEEEeCC-CchhCC---------HhHcCCCcc-eEEEEECCcCHHHHHHHHHHHh
Confidence 1233555555555543 223455555543 222222 45555 43 5689999999999888887766
Q ss_pred HHhCCCCCHHHHHHHHHH----cCCcHHHHHHHHHHhcc
Q 009072 350 RQEQYSLSTEQIDLVAQA----SGGDIRQAITSLQFSSL 384 (544)
Q Consensus 350 ~~e~~~i~~~~l~~Ia~~----s~GDiR~aIn~Lq~~~~ 384 (544)
.+..+. ++..++.|++. |+.||..+++.-.+.+.
T Consensus 662 ~~~~~~-~~~dl~~la~~t~g~SGadi~~l~~~A~~~a~ 699 (806)
T 3cf2_A 662 RKSPVA-KDVDLEFLAKMTNGFSGADLTEICQRACKLAI 699 (806)
T ss_dssp SCC--C-CC----------------CHHHHHHHHHHHHH
T ss_pred cCCCCC-CCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 443322 23346667665 56699988877666554
No 23
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.80 E-value=1.1e-18 Score=175.95 Aligned_cols=219 Identities=12% Similarity=0.087 Sum_probs=143.6
Q ss_pred cccCCCCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHh----------CCeEEEEe
Q 009072 141 EKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL----------GARLYEWD 210 (544)
Q Consensus 141 eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~el----------g~~viei~ 210 (544)
+.|.|..+ |.++++.++++..+|...... +. + +.++|+||||||||++++.+++++ .+.++++|
T Consensus 14 ~~~~~~~~--L~~Re~E~~~i~~~L~~~i~~--~~-~-~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~IN 87 (318)
T 3te6_A 14 ESLQKREL--LKSQVEDFTRIFLPIYDSLMS--SQ-N-KLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHID 87 (318)
T ss_dssp HHHHHHHH--HHHHHHHHHHHHHHHHHHHHT--TC-C-CEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEE
T ss_pred hccCCccc--cCCHHHHHHHHHHHHHHHhcC--CC-C-CeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEe
Confidence 34555333 789999999999999988763 22 2 789999999999999999999998 46789999
Q ss_pred CCCchh---hhhhhhccccCc--ccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHH
Q 009072 211 TPTPTI---WQEYMHNCKTGL--EYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCL 285 (544)
Q Consensus 211 ~s~~~~---~~e~l~~~~~g~--~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L 285 (544)
+..... ....+.....|. ........++.++..+... ...+.||+|||+|.+..++.+ ..|
T Consensus 88 c~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~----------~~~~~ii~lDE~d~l~~q~~L----~~l 153 (318)
T 3te6_A 88 ALELAGMDALYEKIWFAISKENLCGDISLEALNFYITNVPKA----------KKRKTLILIQNPENLLSEKIL----QYF 153 (318)
T ss_dssp TTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGG----------GSCEEEEEEECCSSSCCTHHH----HHH
T ss_pred ccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhc----------cCCceEEEEecHHHhhcchHH----HHH
Confidence 865331 111111111121 1222345566666543111 145789999999998743322 223
Q ss_pred HHHHhcCCCcEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHHhC------------
Q 009072 286 LLLVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQ------------ 353 (544)
Q Consensus 286 ~~~~~~~~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e~------------ 353 (544)
.++......++++|+..... + .......+.+.+|+++..|.|+|++.+++..+|++.+....
T Consensus 154 ~~~~~~~~s~~~vI~i~n~~----d--~~~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~ 227 (318)
T 3te6_A 154 EKWISSKNSKLSIICVGGHN----V--TIREQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDKKE 227 (318)
T ss_dssp HHHHHCSSCCEEEEEECCSS----C--CCHHHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECTTCC
T ss_pred HhcccccCCcEEEEEEecCc----c--cchhhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHHhhhcccccccccccc
Confidence 33333444445544433111 1 11111123345666568899999999999999999987642
Q ss_pred -----------------------CCCCHHHHHHHHH---HcCCcHHHHHHHHHHhccC
Q 009072 354 -----------------------YSLSTEQIDLVAQ---ASGGDIRQAITSLQFSSLK 385 (544)
Q Consensus 354 -----------------------~~i~~~~l~~Ia~---~s~GDiR~aIn~Lq~~~~~ 385 (544)
+.+++++++.+|+ ..+||+|.||+.|..+...
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ai~~~A~~vA~~~GD~R~Al~ilr~A~~~ 285 (318)
T 3te6_A 228 MTIYNNIREGQNQKIPDNVIVINHKINNKITQLIAKNVANVSGSTEKAFKICEAAVEI 285 (318)
T ss_dssp EEECCCC--------CTTEEEECEECCHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccCHHHHHHHHHHHHhhCChHHHHHHHHHHHHHH
Confidence 1368999999998 5789999999999887653
No 24
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.80 E-value=1.1e-18 Score=180.13 Aligned_cols=214 Identities=12% Similarity=0.121 Sum_probs=144.7
Q ss_pred CCcccccCCCCcchhccChHHHHHHHHHHHHhhcCC----CCCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCC
Q 009072 137 QLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDS----KDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTP 212 (544)
Q Consensus 137 ~lW~eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~----~g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s 212 (544)
..|+.++++.+|++++|.+..++.|++++......+ .+..+++.+||+||||||||++|+++|++++.+++.++.+
T Consensus 39 ~~~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~ 118 (355)
T 2qp9_X 39 SAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSS 118 (355)
T ss_dssp --------CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHH
T ss_pred hhhcccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHH
Confidence 456788999999999999999999999886543322 1233447899999999999999999999999999999865
Q ss_pred CchhhhhhhhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCch------hHHHHHHHHHH
Q 009072 213 TPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGR------TAFERLRQCLL 286 (544)
Q Consensus 213 ~~~~~~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~------~~~~~~~~~L~ 286 (544)
+.. +.........++.++..+... .+.||||||+|.+... ....++.+.|+
T Consensus 119 ~l~-----------~~~~g~~~~~~~~~f~~a~~~------------~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll 175 (355)
T 2qp9_X 119 DLV-----------SKWMGESEKLVKQLFAMAREN------------KPSIIFIDQVDALTGTRGEGESEASRRIKTELL 175 (355)
T ss_dssp HHH-----------SCC---CHHHHHHHHHHHHHT------------SSEEEEEECGGGGTC------CTHHHHHHHHHH
T ss_pred HHh-----------hhhcchHHHHHHHHHHHHHHc------------CCeEEEEechHhhcccCCCCcchHHHHHHHHHH
Confidence 421 111112234556666665432 4789999999987542 12344555555
Q ss_pred HHHhcC---CCcEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHH
Q 009072 287 LLVRST---HIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDL 363 (544)
Q Consensus 287 ~~~~~~---~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~l~~ 363 (544)
..++.. ...+++|++++.. ..+ ..++++|+ ...+.|.+|+.++...+|+.++...+..+++..++.
T Consensus 176 ~~l~~~~~~~~~v~vI~atn~~--------~~l--d~al~rRf-~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~ 244 (355)
T 2qp9_X 176 VQMNGVGNDSQGVLVLGATNIP--------WQL--DSAIRRRF-ERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRT 244 (355)
T ss_dssp HHHHHCC---CCEEEEEEESCG--------GGS--CHHHHHTC-CEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHH
T ss_pred HHhhcccccCCCeEEEeecCCc--------ccC--CHHHHccc-CEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHH
Confidence 555422 2345666554221 011 14455553 478899999999999999999888777789999999
Q ss_pred HHHHcCC----cHHHHHHHHHHhcc
Q 009072 364 VAQASGG----DIRQAITSLQFSSL 384 (544)
Q Consensus 364 Ia~~s~G----DiR~aIn~Lq~~~~ 384 (544)
|+..+.| ||+.+++...+.+.
T Consensus 245 la~~t~G~sg~dl~~l~~~A~~~a~ 269 (355)
T 2qp9_X 245 LGAMTEGYSGSDIAVVVKDALMQPI 269 (355)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 9999988 88888877666654
No 25
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.80 E-value=3.8e-18 Score=171.38 Aligned_cols=210 Identities=16% Similarity=0.143 Sum_probs=146.7
Q ss_pred CCcccccCCCCcchhccChHHHHHHHHHHHHhhcCCC----CCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCC
Q 009072 137 QLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSK----DKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTP 212 (544)
Q Consensus 137 ~lW~eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~----g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s 212 (544)
..|+++|+|.+|++++|++..++.|.+++......+. ...+++.+||+||||||||++|+++|++++.+++.++.+
T Consensus 9 ~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~ 88 (297)
T 3b9p_A 9 DEIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSATFLNISAA 88 (297)
T ss_dssp TTTBCCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEEST
T ss_pred HHhccCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHH
Confidence 4688999999999999999999999999876433211 112347999999999999999999999999999999987
Q ss_pred CchhhhhhhhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchh------HHHHHHHHHH
Q 009072 213 TPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRT------AFERLRQCLL 286 (544)
Q Consensus 213 ~~~~~~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~------~~~~~~~~L~ 286 (544)
+.. +.........++.++..+... .|.||+|||+|.+.... ...++.+.|+
T Consensus 89 ~l~-----------~~~~~~~~~~~~~~~~~~~~~------------~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll 145 (297)
T 3b9p_A 89 SLT-----------SKYVGDGEKLVRALFAVARHM------------QPSIIFIDEVDSLLSERSSSEHEASRRLKTEFL 145 (297)
T ss_dssp TTS-----------SSSCSCHHHHHHHHHHHHHHT------------CSEEEEEETGGGTSBCC-----CCSHHHHHHHH
T ss_pred HHh-----------hcccchHHHHHHHHHHHHHHc------------CCcEEEeccHHHhccccccCcchHHHHHHHHHH
Confidence 531 111112234455556555432 47899999999874321 1123333344
Q ss_pred HHHhcCC-----CcEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHH
Q 009072 287 LLVRSTH-----IPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQI 361 (544)
Q Consensus 287 ~~~~~~~-----~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~l 361 (544)
..++... ..+++|+++... ..+ ..++++|+ ...+.|.+|+.++...++..++...+..++++.+
T Consensus 146 ~~l~~~~~~~~~~~v~vi~~tn~~--------~~l--~~~l~~R~-~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~ 214 (297)
T 3b9p_A 146 VEFDGLPGNPDGDRIVVLAATNRP--------QEL--DEAALRRF-TKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEAL 214 (297)
T ss_dssp HHHHHCC------CEEEEEEESCG--------GGB--CHHHHHHC-CEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHH
T ss_pred HHHhcccccCCCCcEEEEeecCCh--------hhC--CHHHHhhC-CeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 4443321 235555554221 011 13455554 4689999999999999999999888888999999
Q ss_pred HHHHHHcCCcHHHHHHHHH
Q 009072 362 DLVAQASGGDIRQAITSLQ 380 (544)
Q Consensus 362 ~~Ia~~s~GDiR~aIn~Lq 380 (544)
+.|+..+.|..+..|..|-
T Consensus 215 ~~la~~~~g~~~~~l~~l~ 233 (297)
T 3b9p_A 215 RRLAKITDGYSGSDLTALA 233 (297)
T ss_dssp HHHHHHTTTCCHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHH
Confidence 9999999998887776553
No 26
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.80 E-value=1.6e-18 Score=181.33 Aligned_cols=215 Identities=13% Similarity=0.148 Sum_probs=149.0
Q ss_pred CCCcccccCCCCcchhccChHHHHHHHHHHHHhhcCCC-----CCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEe
Q 009072 136 QQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSK-----DKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWD 210 (544)
Q Consensus 136 ~~lW~eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~-----g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~ 210 (544)
..+.+++-+..+|+|++|.++.+++|++.+......+. |..+++.+|||||||||||++|+++|++++.+++.++
T Consensus 159 ~~~~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~ 238 (428)
T 4b4t_K 159 SVMGENEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVN 238 (428)
T ss_dssp CCCEEESSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEE
T ss_pred hhccCCCCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEe
Confidence 34556666678999999999999999998876655432 6667799999999999999999999999999999998
Q ss_pred CCCchhhhhhhhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCc---------hhHHHHH
Q 009072 211 TPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNG---------RTAFERL 281 (544)
Q Consensus 211 ~s~~~~~~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~---------~~~~~~~ 281 (544)
.++. .+.........++.++..+... .|+||+|||+|.+.. .....++
T Consensus 239 ~~~l-----------~~~~~Ge~e~~ir~lF~~A~~~------------aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~ 295 (428)
T 4b4t_K 239 GSEF-----------VHKYLGEGPRMVRDVFRLAREN------------APSIIFIDEVDSIATKRFDAQTGSDREVQRI 295 (428)
T ss_dssp GGGT-----------CCSSCSHHHHHHHHHHHHHHHT------------CSEEEEEECTHHHHCSCSSSCSCCCCHHHHH
T ss_pred cchh-----------hccccchhHHHHHHHHHHHHHc------------CCCeeechhhhhhhccccCCCCCCChHHHHH
Confidence 7652 2223334557788888888754 389999999996521 1123445
Q ss_pred HHHHHHHHhc--CCCcEEEEEccCCCCCCCCccccchHHHHHHHhhcC-ceeEEec-CCCHHHHHHHHHHHHHHhCCCCC
Q 009072 282 RQCLLLLVRS--THIPTAVVLTECGKADSVDSTAQSFEELQSILVDAG-ARKVALN-PITNGSIKRTLSKICRQEQYSLS 357 (544)
Q Consensus 282 ~~~L~~~~~~--~~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~-~~~I~f~-p~s~~~i~~~L~~i~~~e~~~i~ 357 (544)
...|+..++. ....+++|++++... ..| +++++..| ...|.|+ +|+..+...+++..+....+. +
T Consensus 296 l~~lL~~ldg~~~~~~v~vI~aTN~~~-~LD---------~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~-~ 364 (428)
T 4b4t_K 296 LIELLTQMDGFDQSTNVKVIMATNRAD-TLD---------PALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLA-P 364 (428)
T ss_dssp HHHHHHHHHHSCSSCSEEEEEEESCSS-SCC---------HHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBC-T
T ss_pred HHHHHHHhhCCCCCCCEEEEEecCChh-hcC---------hhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCC-c
Confidence 4444444442 334566666653321 111 45554323 3468895 788888888888877654432 2
Q ss_pred HHHHHHHHHHcCC----cHHHHHHHHHHhcc
Q 009072 358 TEQIDLVAQASGG----DIRQAITSLQFSSL 384 (544)
Q Consensus 358 ~~~l~~Ia~~s~G----DiR~aIn~Lq~~~~ 384 (544)
+..++.||..+.| ||+.+++..-+.+.
T Consensus 365 ~~dl~~lA~~t~G~sgadi~~l~~eA~~~a~ 395 (428)
T 4b4t_K 365 EADLDSLIIRNDSLSGAVIAAIMQEAGLRAV 395 (428)
T ss_dssp TCCHHHHHHHTTTCCHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 2347888888766 89988876655554
No 27
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.79 E-value=9.1e-18 Score=170.87 Aligned_cols=209 Identities=11% Similarity=0.110 Sum_probs=147.0
Q ss_pred ccccCCCCcchhccChHHHHHHHHHHHHhhcCCC----CCCCccEEEEEcCCCCcHHHHHHHHHHHh-CCeEEEEeCCCc
Q 009072 140 AEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSK----DKFSTNVLVITGQAGVGKTATVRQIASHL-GARLYEWDTPTP 214 (544)
Q Consensus 140 ~eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~----g~~~~~~lLL~GPpG~GKTtla~~lA~el-g~~viei~~s~~ 214 (544)
+.++++.+|+|++|.+..++.|++++......+. +..+++.+||+||||||||++|+++|+++ +..++.++.++.
T Consensus 3 ~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l 82 (322)
T 1xwi_A 3 VIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDL 82 (322)
T ss_dssp EEECCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSS
T ss_pred eecCCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHH
Confidence 4577889999999999999999998875543321 23445899999999999999999999999 889999998763
Q ss_pred hhhhhhhhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCch------hHHHHHHHHHHHH
Q 009072 215 TIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGR------TAFERLRQCLLLL 288 (544)
Q Consensus 215 ~~~~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~------~~~~~~~~~L~~~ 288 (544)
. +.........++.++..+... .|.||||||+|.+... ....++.+.|+..
T Consensus 83 ~-----------~~~~g~~~~~~~~lf~~a~~~------------~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ 139 (322)
T 1xwi_A 83 V-----------SKWLGESEKLVKNLFQLAREN------------KPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQ 139 (322)
T ss_dssp C-----------CSSCCSCHHHHHHHHHHHHHT------------SSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHH
T ss_pred H-----------hhhhhHHHHHHHHHHHHHHhc------------CCcEEEeecHHHhccccccccchHHHHHHHHHHHH
Confidence 1 111223345667777766533 4789999999987321 2244555555555
Q ss_pred Hhc---CCCcEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Q 009072 289 VRS---THIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVA 365 (544)
Q Consensus 289 ~~~---~~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~l~~Ia 365 (544)
++. ....+++|++++... .+ ..++++|+ ...+.+++|+.++...+|+..+...+..+++..++.|+
T Consensus 140 ld~~~~~~~~v~vI~atn~~~--------~l--d~al~rRf-~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la 208 (322)
T 1xwi_A 140 MQGVGVDNDGILVLGATNIPW--------VL--DSAIRRRF-EKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELG 208 (322)
T ss_dssp HHCSSSCCTTEEEEEEESCTT--------TS--CHHHHHTC-CEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHH
T ss_pred HhcccccCCCEEEEEecCCcc--------cC--CHHHHhhc-CeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Confidence 543 223466665543221 11 13555553 46899999999999999999888777778999999999
Q ss_pred HHcCC----cHHHHHHHHHHh
Q 009072 366 QASGG----DIRQAITSLQFS 382 (544)
Q Consensus 366 ~~s~G----DiR~aIn~Lq~~ 382 (544)
+.+.| ||+.+++...+.
T Consensus 209 ~~t~G~sgadl~~l~~~A~~~ 229 (322)
T 1xwi_A 209 RKTDGYSGADISIIVRDALMQ 229 (322)
T ss_dssp HTCTTCCHHHHHHHHHHHHTH
T ss_pred HHcCCCCHHHHHHHHHHHHHH
Confidence 99887 455555444333
No 28
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.77 E-value=1.1e-17 Score=172.62 Aligned_cols=207 Identities=16% Similarity=0.162 Sum_probs=143.5
Q ss_pred cccccCCCCcchhccChHHHHHHHHHHHHhhcCCC----CCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCCc
Q 009072 139 WAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSK----DKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTP 214 (544)
Q Consensus 139 W~eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~----g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~~ 214 (544)
++++|+|.++++++|++..+++|.+++......+. ...+++.+||+||||||||++|+++|++++.+++.+++++.
T Consensus 74 i~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l 153 (357)
T 3d8b_A 74 IMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSL 153 (357)
T ss_dssp TBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGG
T ss_pred cccCCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHh
Confidence 57789999999999999999999999876433221 11234799999999999999999999999999999987652
Q ss_pred hhhhhhhhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCch------hHHHHHHHHHHHH
Q 009072 215 TIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGR------TAFERLRQCLLLL 288 (544)
Q Consensus 215 ~~~~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~------~~~~~~~~~L~~~ 288 (544)
. +.........++.++..+.. ..+.||||||+|.+... ....++++.|+..
T Consensus 154 ~-----------~~~~g~~~~~~~~~~~~a~~------------~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~ 210 (357)
T 3d8b_A 154 T-----------SKWVGEGEKMVRALFAVARC------------QQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQ 210 (357)
T ss_dssp C-----------CSSTTHHHHHHHHHHHHHHH------------TCSEEEEEETHHHHTBC------CHHHHHHHHHHHH
T ss_pred h-----------ccccchHHHHHHHHHHHHHh------------cCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHH
Confidence 1 11111223445555555542 24789999999876331 1223444445554
Q ss_pred Hhc----CCCcEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHH
Q 009072 289 VRS----THIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLV 364 (544)
Q Consensus 289 ~~~----~~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~l~~I 364 (544)
++. ....+++|++++.. ..+ ..++++|+ ...+.+.+|+.++...+|..++..++..++++.++.|
T Consensus 211 l~~~~~~~~~~v~vI~atn~~--------~~l--~~~l~~Rf-~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~l 279 (357)
T 3d8b_A 211 LDGATTSSEDRILVVGATNRP--------QEI--DEAARRRL-VKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQI 279 (357)
T ss_dssp HHC----CCCCEEEEEEESCG--------GGB--CHHHHTTC-CEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHH
T ss_pred HhcccccCCCCEEEEEecCCh--------hhC--CHHHHhhC-ceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHH
Confidence 442 23356666554221 011 14555553 4578999999999999999999988888999999999
Q ss_pred HHHcCCcHHHHHHHH
Q 009072 365 AQASGGDIRQAITSL 379 (544)
Q Consensus 365 a~~s~GDiR~aIn~L 379 (544)
+..+.|-....|+.|
T Consensus 280 a~~t~G~s~~dl~~l 294 (357)
T 3d8b_A 280 VQQSDAFSGADMTQL 294 (357)
T ss_dssp HHHTTTCCHHHHHHH
T ss_pred HHHcCCCCHHHHHHH
Confidence 999998444444444
No 29
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.77 E-value=1.5e-17 Score=168.96 Aligned_cols=198 Identities=16% Similarity=0.174 Sum_probs=139.6
Q ss_pred CcccccCCCCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCCchhh
Q 009072 138 LWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIW 217 (544)
Q Consensus 138 lW~eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~~~~~ 217 (544)
+|.++|+|.++++++|++..++.+..++...... +.. .+.+||+||||||||++|++++++++.+++.++.+....
T Consensus 1 ~~~~~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~--~~~-~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~- 76 (324)
T 1hqc_A 1 MEDLALRPKTLDEYIGQERLKQKLRVYLEAAKAR--KEP-LEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK- 76 (324)
T ss_dssp ----CCCCCSTTTCCSCHHHHHHHHHHHHHHHHH--CSC-CCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCS-
T ss_pred CCccccCcccHHHhhCHHHHHHHHHHHHHHHHcc--CCC-CCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCC-
Confidence 4678999999999999999999999998765421 122 267999999999999999999999999998887654210
Q ss_pred hhhhhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHHHHHhcCC----
Q 009072 218 QEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTH---- 293 (544)
Q Consensus 218 ~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~~~~~~~---- 293 (544)
...+...+ ... ...+.+|||||++.+... .++.|..+++...
T Consensus 77 ----------------~~~l~~~l---~~~----------~~~~~~l~lDEi~~l~~~-----~~~~L~~~l~~~~~~~v 122 (324)
T 1hqc_A 77 ----------------PGDLAAIL---ANS----------LEEGDILFIDEIHRLSRQ-----AEEHLYPAMEDFVMDIV 122 (324)
T ss_dssp ----------------HHHHHHHH---TTT----------CCTTCEEEETTTTSCCHH-----HHHHHHHHHHHSEEEEC
T ss_pred ----------------hHHHHHHH---HHh----------ccCCCEEEEECCcccccc-----hHHHHHHHHHhhhhHHh
Confidence 11222222 110 134679999999998743 2233444444321
Q ss_pred --------------CcEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHHhCCCCCHH
Q 009072 294 --------------IPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTE 359 (544)
Q Consensus 294 --------------~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~ 359 (544)
.++++|++++.... + ..++.+|+ ...+.|.+|+.+++..++...+...+..++++
T Consensus 123 ~~~~~~~~~~~~~~~~~~~i~~t~~~~~--------~--~~~l~~R~-~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~ 191 (324)
T 1hqc_A 123 IGQGPAARTIRLELPRFTLIGATTRPGL--------I--TAPLLSRF-GIVEHLEYYTPEELAQGVMRDARLLGVRITEE 191 (324)
T ss_dssp CSSSSSCCCEEEECCCCEEEEEESCCSS--------C--SCSTTTTC-SCEEECCCCCHHHHHHHHHHHHHTTTCCCCHH
T ss_pred ccccccccccccCCCCEEEEEeCCCccc--------C--CHHHHhcc-cEEEecCCCCHHHHHHHHHHHHHhcCCCCCHH
Confidence 12445544432211 1 01233442 36899999999999999999999889999999
Q ss_pred HHHHHHHHcCCcHHHHHHHHHHhcc
Q 009072 360 QIDLVAQASGGDIRQAITSLQFSSL 384 (544)
Q Consensus 360 ~l~~Ia~~s~GDiR~aIn~Lq~~~~ 384 (544)
+++.|+..++|++|.+.+.++.+..
T Consensus 192 ~~~~l~~~~~G~~r~l~~~l~~~~~ 216 (324)
T 1hqc_A 192 AALEIGRRSRGTMRVAKRLFRRVRD 216 (324)
T ss_dssp HHHHHHHHSCSCHHHHHHHHHHHTT
T ss_pred HHHHHHHHccCCHHHHHHHHHHHHH
Confidence 9999999999999999999988754
No 30
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.77 E-value=2.8e-17 Score=175.28 Aligned_cols=114 Identities=13% Similarity=0.166 Sum_probs=85.6
Q ss_pred eEEEEecCCCCCchhHHHHHHHHHHHHHhcCCCcEEEEEccCCCCC---CCCccccchHHHHHHHhhcCceeEEecCCCH
Q 009072 262 AILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPTAVVLTECGKAD---SVDSTAQSFEELQSILVDAGARKVALNPITN 338 (544)
Q Consensus 262 ~vIlIDEid~l~~~~~~~~~~~~L~~~~~~~~~piIiI~t~~~~~~---~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~ 338 (544)
.|++|||++.++. ..+++|++.++....++++++++..... .++. ......++++++| |..+.|.|++.
T Consensus 297 ~VliIDEa~~l~~-----~a~~aLlk~lEe~~~~~~il~tn~~~~~i~~~~~~-~~~~~l~~~i~sR--~~~~~~~~~~~ 368 (456)
T 2c9o_A 297 GVLFVDEVHMLDI-----ECFTYLHRALESSIAPIVIFASNRGNCVIRGTEDI-TSPHGIPLDLLDR--VMIIRTMLYTP 368 (456)
T ss_dssp CEEEEESGGGCBH-----HHHHHHHHHTTSTTCCEEEEEECCSEEECBTTSSC-EEETTCCHHHHTT--EEEEECCCCCH
T ss_pred eEEEEechhhcCH-----HHHHHHHHHhhccCCCEEEEecCCccccccccccc-cccccCChhHHhh--cceeeCCCCCH
Confidence 6999999999864 3456788889988888655565321000 0000 0011112456665 88899999999
Q ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHc-CCcHHHHHHHHHHhc
Q 009072 339 GSIKRTLSKICRQEQYSLSTEQIDLVAQAS-GGDIRQAITSLQFSS 383 (544)
Q Consensus 339 ~~i~~~L~~i~~~e~~~i~~~~l~~Ia~~s-~GDiR~aIn~Lq~~~ 383 (544)
+++.++|+.++..+++.++++++..|+..+ +|++|.|++.|+.+.
T Consensus 369 ~e~~~iL~~~~~~~~~~~~~~~~~~i~~~a~~g~~r~a~~ll~~a~ 414 (456)
T 2c9o_A 369 QEMKQIIKIRAQTEGINISEEALNHLGEIGTKTTLRYSVQLLTPAN 414 (456)
T ss_dssp HHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHSCHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999 999999999998763
No 31
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.76 E-value=1.3e-17 Score=177.05 Aligned_cols=214 Identities=11% Similarity=0.105 Sum_probs=145.7
Q ss_pred CCcccccCCCCcchhccChHHHHHHHHHHHHhhcCCC----CCCCccEEEEEcCCCCcHHHHHHHHHHHh-CCeEEEEeC
Q 009072 137 QLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSK----DKFSTNVLVITGQAGVGKTATVRQIASHL-GARLYEWDT 211 (544)
Q Consensus 137 ~lW~eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~----g~~~~~~lLL~GPpG~GKTtla~~lA~el-g~~viei~~ 211 (544)
..++.++++.+|+|++|.+..++.|.+++......+. +..+++.+||+||||||||++|+++|+++ +..++.++.
T Consensus 122 ~~i~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~ 201 (444)
T 2zan_A 122 GAIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISS 201 (444)
T ss_dssp --CBCCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECC
T ss_pred cceeccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeH
Confidence 4567789999999999999999999998865433221 23344899999999999999999999999 889999988
Q ss_pred CCchhhhhhhhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCch------hHHHHHHHHH
Q 009072 212 PTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGR------TAFERLRQCL 285 (544)
Q Consensus 212 s~~~~~~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~------~~~~~~~~~L 285 (544)
++... .........++.++..+... .|.||||||+|.+... ....++.+.|
T Consensus 202 ~~l~~-----------~~~g~~~~~~~~~f~~a~~~------------~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l 258 (444)
T 2zan_A 202 SDLVS-----------KWLGESEKLVKNLFQLAREN------------KPSIIFIDEIDSLCGSRSENESEAARRIKTEF 258 (444)
T ss_dssp C--------------------CCCTHHHHHHHHHHS------------CSEEEEESCTTTTCCCSSCCCCGGGHHHHHHH
T ss_pred HHHHh-----------hhcchHHHHHHHHHHHHHHc------------CCeEEEEechHhhccCCCCccccHHHHHHHHH
Confidence 76321 00011112345566655432 4789999999987331 2234555555
Q ss_pred HHHHhcC---CCcEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHH
Q 009072 286 LLLVRST---HIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQID 362 (544)
Q Consensus 286 ~~~~~~~---~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~l~ 362 (544)
+..++.. ...+++|++++.. ..+ ..++++|+ ...+.+++|+.++...++...+...+..+++..++
T Consensus 259 L~~l~~~~~~~~~v~vI~atn~~--------~~l--d~al~rRf-~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~ 327 (444)
T 2zan_A 259 LVQMQGVGVDNDGILVLGATNIP--------WVL--DSAIRRRF-EKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQ 327 (444)
T ss_dssp HTTTTCSSCCCSSCEEEEEESCG--------GGS--CHHHHTTC-CEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHH
T ss_pred HHHHhCcccCCCCEEEEecCCCc--------ccc--CHHHHhhc-ceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHH
Confidence 5555432 2345666554221 111 14555553 36889999999999999999887777778999999
Q ss_pred HHHHHcCC----cHHHHHHHHHHhcc
Q 009072 363 LVAQASGG----DIRQAITSLQFSSL 384 (544)
Q Consensus 363 ~Ia~~s~G----DiR~aIn~Lq~~~~ 384 (544)
.|+..+.| ||+.+++..-+.+.
T Consensus 328 ~la~~t~G~sgadl~~l~~~a~~~a~ 353 (444)
T 2zan_A 328 ELGRKTDGYSGADISIIVRDALMQPV 353 (444)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHTHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 99999988 77777666555443
No 32
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.72 E-value=1.3e-16 Score=159.16 Aligned_cols=211 Identities=13% Similarity=0.161 Sum_probs=136.8
Q ss_pred ccccCCCCcchhccChHHHHHHHHHHHHhhcCCC-----CCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCCc
Q 009072 140 AEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSK-----DKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTP 214 (544)
Q Consensus 140 ~eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~-----g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~~ 214 (544)
++..++.++++++|.+..+++|.+++......+. |..+++.+||+||||||||++|+++|++++.+++.++.++.
T Consensus 8 ~~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~ 87 (285)
T 3h4m_A 8 VDERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSEL 87 (285)
T ss_dssp EESSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGG
T ss_pred ccCCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHH
Confidence 4566778999999999999999999876533211 22344789999999999999999999999999999886542
Q ss_pred hhhhhhhhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCc---------hhHHHHHHHHH
Q 009072 215 TIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNG---------RTAFERLRQCL 285 (544)
Q Consensus 215 ~~~~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~---------~~~~~~~~~~L 285 (544)
. +.........+...+..+... .|.||||||+|.+.. ..........+
T Consensus 88 ~-----------~~~~~~~~~~~~~~~~~~~~~------------~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~l 144 (285)
T 3h4m_A 88 V-----------KKFIGEGASLVKDIFKLAKEK------------APSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQL 144 (285)
T ss_dssp C-----------CCSTTHHHHHHHHHHHHHHHT------------CSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHH
T ss_pred H-----------HhccchHHHHHHHHHHHHHHc------------CCeEEEEECHHHhcccCccccCCccHHHHHHHHHH
Confidence 1 111122234455566655432 378999999997621 11112222222
Q ss_pred HHHHh--cCCCcEEEEEccCCCCCCCCccccchHHHHHHHhhcC-ceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHH
Q 009072 286 LLLVR--STHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAG-ARKVALNPITNGSIKRTLSKICRQEQYSLSTEQID 362 (544)
Q Consensus 286 ~~~~~--~~~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~-~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~l~ 362 (544)
...++ ....++++|+++... ..+ ..+++++.| ...+.|++|+.++...+++..+...++. .+..+.
T Consensus 145 l~~~~~~~~~~~~~vI~ttn~~--------~~l--~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~ 213 (285)
T 3h4m_A 145 LAEMDGFDARGDVKIIGATNRP--------DIL--DPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLA-EDVNLE 213 (285)
T ss_dssp HHHHHTTCSSSSEEEEEECSCG--------GGB--CHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBC-TTCCHH
T ss_pred HHHhhCCCCCCCEEEEEeCCCc--------hhc--CHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCC-CcCCHH
Confidence 22222 122346666655221 111 134444212 3589999999999999999887665443 233467
Q ss_pred HHHHHcCC----cHHHHHHHHHHhcc
Q 009072 363 LVAQASGG----DIRQAITSLQFSSL 384 (544)
Q Consensus 363 ~Ia~~s~G----DiR~aIn~Lq~~~~ 384 (544)
.|+..+.| ||+.+++.....+.
T Consensus 214 ~l~~~~~g~~~~~i~~l~~~a~~~a~ 239 (285)
T 3h4m_A 214 EIAKMTEGCVGAELKAICTEAGMNAI 239 (285)
T ss_dssp HHHHHCTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 78888776 88888887777765
No 33
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.71 E-value=7.9e-16 Score=151.18 Aligned_cols=204 Identities=14% Similarity=0.132 Sum_probs=128.6
Q ss_pred CCCcchhccChHHHHHHHHHHHHhhcCCC-----CCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCCchhhhh
Q 009072 145 PRSLEELAVQRKKVEEVRAWFEERLGDSK-----DKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIWQE 219 (544)
Q Consensus 145 P~~~~dLv~~~~~~~~l~~wL~~~~~~~~-----g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~~~~~~e 219 (544)
+.+|++++|.+..++++++++... ..+. |..+++.+||+||||||||++|+++|++++.+++.++.++...
T Consensus 2 ~~~~~~i~G~~~~~~~l~~~~~~~-~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~--- 77 (262)
T 2qz4_A 2 GVSFKDVAGMHEAKLEVREFVDYL-KSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVE--- 77 (262)
T ss_dssp CCCTTSSCSCHHHHHHHHHHHHHH-HCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSS---
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHH-HCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHh---
Confidence 468999999999999999887653 2221 2234478999999999999999999999999999998876321
Q ss_pred hhhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchh----------HHHHHHHHHHHHH
Q 009072 220 YMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRT----------AFERLRQCLLLLV 289 (544)
Q Consensus 220 ~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~----------~~~~~~~~L~~~~ 289 (544)
.........+..++..+... .+.||+|||+|.+.... ........|+..+
T Consensus 78 --------~~~~~~~~~~~~~~~~a~~~------------~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~ 137 (262)
T 2qz4_A 78 --------VIGGLGAARVRSLFKEARAR------------APCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEM 137 (262)
T ss_dssp --------SSTTHHHHHHHHHHHHHHHT------------CSEEEEEECC-------------------CHHHHHHHHHH
T ss_pred --------hccChhHHHHHHHHHHHHhc------------CCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHh
Confidence 11111224455666665432 37899999999984321 0111222233333
Q ss_pred hc--CCCcEEEEEccCCCCCCCCccccchHHHHHHHh--hcCceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHH-HHHH
Q 009072 290 RS--THIPTAVVLTECGKADSVDSTAQSFEELQSILV--DAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQ-IDLV 364 (544)
Q Consensus 290 ~~--~~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~--r~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~-l~~I 364 (544)
+. ....+++|++++... .+ ..++++ |+ ...+.|.+|+.++...+++..+...++..+.+. +..|
T Consensus 138 ~~~~~~~~~~vi~~tn~~~--------~l--d~~l~~~~R~-~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l 206 (262)
T 2qz4_A 138 DGMGTTDHVIVLASTNRAD--------IL--DGALMRPGRL-DRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRL 206 (262)
T ss_dssp HTCCTTCCEEEEEEESCGG--------GG--GSGGGSTTSC-CEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHH
T ss_pred hCcCCCCCEEEEecCCChh--------hc--CHHHhcCCcC-CeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHH
Confidence 32 223456666543211 11 123333 32 368899999999999999999998888777664 5788
Q ss_pred HHHcCC----cHHHHHHHHHHhc
Q 009072 365 AQASGG----DIRQAITSLQFSS 383 (544)
Q Consensus 365 a~~s~G----DiR~aIn~Lq~~~ 383 (544)
+..+.| ||+.+++.....+
T Consensus 207 ~~~~~g~~~~~l~~l~~~a~~~a 229 (262)
T 2qz4_A 207 AELTPGFSGADIANICNEAALHA 229 (262)
T ss_dssp HHTCTTCCHHHHHHHHHHHHTC-
T ss_pred HHHCCCCCHHHHHHHHHHHHHHH
Confidence 887765 5556555554444
No 34
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.71 E-value=3.3e-16 Score=162.70 Aligned_cols=219 Identities=18% Similarity=0.218 Sum_probs=141.3
Q ss_pred CCCcccccCCCCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHh----CCeEEEEeC
Q 009072 136 QQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL----GARLYEWDT 211 (544)
Q Consensus 136 ~~lW~eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~el----g~~viei~~ 211 (544)
...|.++|.| ++++|+++.++++..|+..+.....+.. +.++|+||||+|||++++.+++++ ++.++.+++
T Consensus 7 ~~~l~~~~~p---~~l~gr~~~~~~l~~~l~~~~~~~~~~~--~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~ 81 (389)
T 1fnn_A 7 DSVFSPSYVP---KRLPHREQQLQQLDILLGNWLRNPGHHY--PRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYING 81 (389)
T ss_dssp GGGGSTTCCC---SCCTTCHHHHHHHHHHHHHHHHSTTSSC--CEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEET
T ss_pred HhhcCCccCC---CCCCChHHHHHHHHHHHHHHHcCCCCCC--CeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeC
Confidence 4567889999 6789999999999999998765321111 389999999999999999999998 678999997
Q ss_pred CCchhh----hhhhhccccCcc--cccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHH
Q 009072 212 PTPTIW----QEYMHNCKTGLE--YTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCL 285 (544)
Q Consensus 212 s~~~~~----~e~l~~~~~g~~--~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L 285 (544)
+..... ...+........ ..+....+..+...+... +++.||+|||++.+.. ..+..|
T Consensus 82 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~-----------~~~~vlilDE~~~l~~-----~~~~~L 145 (389)
T 1fnn_A 82 FIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRER-----------DLYMFLVLDDAFNLAP-----DILSTF 145 (389)
T ss_dssp TTCCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHT-----------TCCEEEEEETGGGSCH-----HHHHHH
T ss_pred ccCCCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhc-----------CCeEEEEEECccccch-----HHHHHH
Confidence 654321 111111110000 001112222222222211 3478999999999842 223344
Q ss_pred HHHHhc------CCCcEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHHh--CCCCC
Q 009072 286 LLLVRS------THIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQE--QYSLS 357 (544)
Q Consensus 286 ~~~~~~------~~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e--~~~i~ 357 (544)
..+++. ....+|+++++. + ....+ ...+.+|+....+.|+|++.+++..++...+... ...++
T Consensus 146 ~~~~~~~~~~~~~~~~iI~~~~~~------~-~~~~l--~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~ 216 (389)
T 1fnn_A 146 IRLGQEADKLGAFRIALVIVGHND------A-VLNNL--DPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYS 216 (389)
T ss_dssp HHHTTCHHHHSSCCEEEEEEESST------H-HHHTS--CHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSC
T ss_pred HHHHHhCCCCCcCCEEEEEEECCc------h-HHHHh--CHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCC
Confidence 444432 222233333221 0 00111 1234455444579999999999999999998762 24689
Q ss_pred HHHHHHHHHHc---------CCcHHHHHHHHHHhcc
Q 009072 358 TEQIDLVAQAS---------GGDIRQAITSLQFSSL 384 (544)
Q Consensus 358 ~~~l~~Ia~~s---------~GDiR~aIn~Lq~~~~ 384 (544)
+++++.|++.+ +||+|.+++.++.++.
T Consensus 217 ~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~ 252 (389)
T 1fnn_A 217 EDILQMIADITGAQTPLDTNRGDARLAIDILYRSAY 252 (389)
T ss_dssp HHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHH
Confidence 99999999999 8999999999988764
No 35
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.71 E-value=2.4e-16 Score=158.92 Aligned_cols=203 Identities=15% Similarity=0.143 Sum_probs=137.5
Q ss_pred hhccChHHHHHHHHHHHHhhc-------CCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhC-------CeEEEEeCCCch
Q 009072 150 ELAVQRKKVEEVRAWFEERLG-------DSKDKFSTNVLVITGQAGVGKTATVRQIASHLG-------ARLYEWDTPTPT 215 (544)
Q Consensus 150 dLv~~~~~~~~l~~wL~~~~~-------~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg-------~~viei~~s~~~ 215 (544)
+++|++..++.|.+++..... ......+..++||+||||||||++|+++|+.++ .+++.++.++..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~ 111 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLV 111 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTC
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhh
Confidence 689999999999988765321 001122336899999999999999999999983 377887754311
Q ss_pred hhhhhhhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchh----HHHHHHHHHHHHHhc
Q 009072 216 IWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRT----AFERLRQCLLLLVRS 291 (544)
Q Consensus 216 ~~~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~----~~~~~~~~L~~~~~~ 291 (544)
+.........+...+..+ .+.||||||+|.+.... .-...++.|..+++.
T Consensus 112 -----------~~~~g~~~~~~~~~~~~~---------------~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~ 165 (309)
T 3syl_A 112 -----------GQYIGHTAPKTKEVLKRA---------------MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMEN 165 (309)
T ss_dssp -----------CSSTTCHHHHHHHHHHHH---------------TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHH
T ss_pred -----------hhcccccHHHHHHHHHhc---------------CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhc
Confidence 111111223344445443 14599999999874211 113455667777777
Q ss_pred CCCcEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHc---
Q 009072 292 THIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQAS--- 368 (544)
Q Consensus 292 ~~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~l~~Ia~~s--- 368 (544)
.+.++++|++++.. .....+...+++.+|+ ...|.|++|+.+++..++..++...++.+++++++.++..+
T Consensus 166 ~~~~~~~i~~~~~~-----~~~~~~~~~~~l~~R~-~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~ 239 (309)
T 3syl_A 166 NRDDLVVILAGYAD-----RMENFFQSNPGFRSRI-AHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLR 239 (309)
T ss_dssp CTTTCEEEEEECHH-----HHHHHHHHSTTHHHHE-EEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEeCChH-----HHHHHHhhCHHHHHhC-CeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 66666666654210 0000000113455553 38999999999999999999999999999999999999864
Q ss_pred -----CCcHHHHHHHHHHhcc
Q 009072 369 -----GGDIRQAITSLQFSSL 384 (544)
Q Consensus 369 -----~GDiR~aIn~Lq~~~~ 384 (544)
.||+|.+.+.++.++.
T Consensus 240 ~~~~~~gn~r~l~~~l~~a~~ 260 (309)
T 3syl_A 240 RNQPHFANARSIRNALDRARL 260 (309)
T ss_dssp TTSSSCCHHHHHHHHHHHHHH
T ss_pred ccCCCCCcHHHHHHHHHHHHH
Confidence 4999999999998875
No 36
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.71 E-value=6.1e-17 Score=168.18 Aligned_cols=218 Identities=15% Similarity=0.139 Sum_probs=141.5
Q ss_pred CCCCCcccccCCCCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHh-----------
Q 009072 134 STQQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL----------- 202 (544)
Q Consensus 134 ~~~~lW~eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~el----------- 202 (544)
.....|..+|.| ++++|+++.++++..++..+.. +..+ +.++|+||||||||++|+.+++++
T Consensus 8 ~~~~~l~~~~~p---~~l~gr~~~~~~l~~~l~~~~~---~~~~-~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~ 80 (384)
T 2qby_B 8 NPKVFIDPLSVF---KEIPFREDILRDAAIAIRYFVK---NEVK-FSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYK 80 (384)
T ss_dssp CTTTTTCHHHHC---SSCTTCHHHHHHHHHHHHHHHT---TCCC-CEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSST
T ss_pred ccHhhcCCccCC---CCCCChHHHHHHHHHHHHHHHc---CCCC-CcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCC
Confidence 346789999999 6789999999999999988765 3333 689999999999999999999998
Q ss_pred CCeEEEEeCCCch-h---h-hhhhhcc---ccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCc
Q 009072 203 GARLYEWDTPTPT-I---W-QEYMHNC---KTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNG 274 (544)
Q Consensus 203 g~~viei~~s~~~-~---~-~e~l~~~---~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~ 274 (544)
++.++.+++.... . . ...+... ..+.........+..+...+. ..+.||+|||+|.+..
T Consensus 81 ~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~-------------~~~~vlilDEi~~l~~ 147 (384)
T 2qby_B 81 DVKQAYVNCREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTR-------------NIRAIIYLDEVDTLVK 147 (384)
T ss_dssp TCEEEEEEHHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHS-------------SSCEEEEEETTHHHHH
T ss_pred CceEEEEECccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhc-------------cCCCEEEEECHHHhcc
Confidence 8999999865322 1 1 1111110 000000011122333333221 1223999999998643
Q ss_pred hhHHHHHHHH-HHHHHhcCCCcEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHH--
Q 009072 275 RTAFERLRQC-LLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQ-- 351 (544)
Q Consensus 275 ~~~~~~~~~~-L~~~~~~~~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~-- 351 (544)
... .+. +..+.+.. .++.+|++++... . ...+ ...+.+|+ +..+.|+|++.+++..+|...+..
T Consensus 148 ~~~----~~~~l~~l~~~~-~~~~iI~~t~~~~----~-~~~l--~~~l~sr~-~~~i~l~~l~~~~~~~il~~~~~~~~ 214 (384)
T 2qby_B 148 RRG----GDIVLYQLLRSD-ANISVIMISNDIN----V-RDYM--EPRVLSSL-GPSVIFKPYDAEQLKFILSKYAEYGL 214 (384)
T ss_dssp STT----SHHHHHHHHTSS-SCEEEEEECSSTT----T-TTTS--CHHHHHTC-CCEEEECCCCHHHHHHHHHHHHHHTS
T ss_pred CCC----CceeHHHHhcCC-cceEEEEEECCCc----h-Hhhh--CHHHHhcC-CCeEEECCCCHHHHHHHHHHHHHhhc
Confidence 210 122 33333332 3344444432210 0 0111 13444554 449999999999999999999875
Q ss_pred hCCCCCHHHHHHHHHHcC---CcHHHHHHHHHHhcc
Q 009072 352 EQYSLSTEQIDLVAQASG---GDIRQAITSLQFSSL 384 (544)
Q Consensus 352 e~~~i~~~~l~~Ia~~s~---GDiR~aIn~Lq~~~~ 384 (544)
.+..+++++++.|++.++ ||+|.+++.|+.+..
T Consensus 215 ~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~ 250 (384)
T 2qby_B 215 IKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQ 250 (384)
T ss_dssp CTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred ccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 346789999999999998 999999999988764
No 37
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.71 E-value=3.2e-16 Score=151.37 Aligned_cols=200 Identities=10% Similarity=0.108 Sum_probs=134.5
Q ss_pred CCCcccccCC-CCcchhccC---hHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhC---CeEEE
Q 009072 136 QQLWAEKYKP-RSLEELAVQ---RKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLG---ARLYE 208 (544)
Q Consensus 136 ~~lW~eky~P-~~~~dLv~~---~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg---~~vie 208 (544)
...|..+|+| .+++++++. +..++.+..++.. + ..+.++|+||||||||++|+.++++++ ..++.
T Consensus 14 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------~--~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~ 85 (242)
T 3bos_A 14 QLSLPVHLPDDETFTSYYPAAGNDELIGALKSAASG------D--GVQAIYLWGPVKSGRTHLIHAACARANELERRSFY 85 (242)
T ss_dssp CCEEECCCCTTCSTTTSCC--CCHHHHHHHHHHHHT------C--SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred hcCCCCCCCCCCChhhccCCCCCHHHHHHHHHHHhC------C--CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 3467889998 799999973 4666666666542 2 227899999999999999999999874 67777
Q ss_pred EeCCCchhhhhhhhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhH-HHHHHHHHHH
Q 009072 209 WDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTA-FERLRQCLLL 287 (544)
Q Consensus 209 i~~s~~~~~~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~-~~~~~~~L~~ 287 (544)
++..+... .. ...+. .+ .++.+|+|||++.+..... ...+...+..
T Consensus 86 ~~~~~~~~----------~~---------~~~~~---~~-----------~~~~vliiDe~~~~~~~~~~~~~l~~~l~~ 132 (242)
T 3bos_A 86 IPLGIHAS----------IS---------TALLE---GL-----------EQFDLICIDDVDAVAGHPLWEEAIFDLYNR 132 (242)
T ss_dssp EEGGGGGG----------SC---------GGGGT---TG-----------GGSSEEEEETGGGGTTCHHHHHHHHHHHHH
T ss_pred EEHHHHHH----------HH---------HHHHH---hc-----------cCCCEEEEeccccccCCHHHHHHHHHHHHH
Confidence 76543110 00 00010 01 2367999999998865321 2333444444
Q ss_pred HHhcCCCcEEEEEccCCCCCCCCccccchHHHHHHHhhc-CceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 009072 288 LVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDA-GARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQ 366 (544)
Q Consensus 288 ~~~~~~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~-~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~l~~Ia~ 366 (544)
..+... +.++++++...... .... ..+.+|+ ....+.|++|+.+++..++...+...++.+++++++.|++
T Consensus 133 ~~~~~~-~~ii~~~~~~~~~~----~~~~---~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~ 204 (242)
T 3bos_A 133 VAEQKR-GSLIVSASASPMEA----GFVL---PDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLN 204 (242)
T ss_dssp HHHHCS-CEEEEEESSCTTTT----TCCC---HHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHcCC-CeEEEEcCCCHHHH----HHhh---hhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 444432 32444444222110 0111 3344441 1278999999999999999999999999999999999999
Q ss_pred HcCCcHHHHHHHHHHhcc
Q 009072 367 ASGGDIRQAITSLQFSSL 384 (544)
Q Consensus 367 ~s~GDiR~aIn~Lq~~~~ 384 (544)
.++||+|.+++.|+.++.
T Consensus 205 ~~~g~~r~l~~~l~~~~~ 222 (242)
T 3bos_A 205 RMARDLRTLFDVLDRLDK 222 (242)
T ss_dssp HTTTCHHHHHHHHHHHHH
T ss_pred HccCCHHHHHHHHHHHHH
Confidence 999999999999988764
No 38
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.71 E-value=6.4e-16 Score=158.06 Aligned_cols=197 Identities=17% Similarity=0.219 Sum_probs=134.3
Q ss_pred CCCcccccCCCCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCCch
Q 009072 136 QQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPT 215 (544)
Q Consensus 136 ~~lW~eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~~~ 215 (544)
-+.|+++++|+++++++|++..++.+..++...... +..+ .+++|+||||+||||+++++|.+++..+....++...
T Consensus 12 ~~~~~~~lr~~~l~~~~g~~~~~~~l~~~i~~~~~~--~~~~-~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~ 88 (334)
T 1in4_A 12 YDSGVQFLRPKSLDEFIGQENVKKKLSLALEAAKMR--GEVL-DHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLV 88 (334)
T ss_dssp -----CTTSCSSGGGCCSCHHHHHHHHHHHHHHHHH--TCCC-CCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCC
T ss_pred HHHHHHHcCCccHHHccCcHHHHHHHHHHHHHHHhc--CCCC-CeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhc
Confidence 357899999999999999999999998888764221 2233 6799999999999999999999999887665543310
Q ss_pred hhhhhhhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHHHHHhcCCC-
Q 009072 216 IWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHI- 294 (544)
Q Consensus 216 ~~~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~~~~~~~~- 294 (544)
....+..++.. . ..+.|++|||++.+... ..+.|...++....
T Consensus 89 -----------------~~~~l~~~~~~---~-----------~~~~v~~iDE~~~l~~~-----~~e~L~~~~~~~~~~ 132 (334)
T 1in4_A 89 -----------------KQGDMAAILTS---L-----------ERGDVLFIDEIHRLNKA-----VEELLYSAIEDFQID 132 (334)
T ss_dssp -----------------SHHHHHHHHHH---C-----------CTTCEEEEETGGGCCHH-----HHHHHHHHHHTSCCC
T ss_pred -----------------CHHHHHHHHHH---c-----------cCCCEEEEcchhhcCHH-----HHHHHHHHHHhcccc
Confidence 01222222221 1 23569999999988642 22333333332211
Q ss_pred -----------------cEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHHhCCCCC
Q 009072 295 -----------------PTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLS 357 (544)
Q Consensus 295 -----------------piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~ 357 (544)
++.++..++. ...+ ...+.+|+ ...+.|.+++.+++.++|++++...++.++
T Consensus 133 i~~~~~~~~~~i~~~l~~~~li~at~~--------~~~L--s~~l~sR~-~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~ 201 (334)
T 1in4_A 133 IMIGKGPSAKSIRIDIQPFTLVGATTR--------SGLL--SSPLRSRF-GIILELDFYTVKELKEIIKRAASLMDVEIE 201 (334)
T ss_dssp C---------------CCCEEEEEESC--------GGGS--CHHHHTTC-SEEEECCCCCHHHHHHHHHHHHHHTTCCBC
T ss_pred eeeccCcccccccccCCCeEEEEecCC--------cccC--CHHHHHhc-CceeeCCCCCHHHHHHHHHHHHHHcCCCcC
Confidence 1233322211 0111 13445553 346899999999999999999998899999
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHHh
Q 009072 358 TEQIDLVAQASGGDIRQAITSLQFS 382 (544)
Q Consensus 358 ~~~l~~Ia~~s~GDiR~aIn~Lq~~ 382 (544)
++++..|+..+.||+|.|++.|+.+
T Consensus 202 ~~~~~~ia~~~~G~~R~a~~ll~~~ 226 (334)
T 1in4_A 202 DAAAEMIAKRSRGTPRIAIRLTKRV 226 (334)
T ss_dssp HHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHH
Confidence 9999999999999999999999754
No 39
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.70 E-value=1.3e-16 Score=165.52 Aligned_cols=223 Identities=15% Similarity=0.204 Sum_probs=141.2
Q ss_pred CCcccccCCCCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHh---------CCeEE
Q 009072 137 QLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL---------GARLY 207 (544)
Q Consensus 137 ~lW~eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~el---------g~~vi 207 (544)
..|..+|.| ++++|+++.++++..|+..... +.. ++.++|+||||||||++++.+++++ ++.++
T Consensus 10 ~~l~~~~~p---~~~~gr~~~~~~l~~~l~~~~~---~~~-~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~ 82 (387)
T 2v1u_A 10 WVLLPDYVP---DVLPHREAELRRLAEVLAPALR---GEK-PSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPI 82 (387)
T ss_dssp HHHSTTCCC---SCCTTCHHHHHHHHHTTGGGTS---SCC-CCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEE
T ss_pred HhcCCccCC---CCCCCHHHHHHHHHHHHHHHHc---CCC-CCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEE
Confidence 446667888 6789999999999999976543 222 2689999999999999999999998 88899
Q ss_pred EEeCCCchhhh----hhhhccccCccc-c-cchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHH
Q 009072 208 EWDTPTPTIWQ----EYMHNCKTGLEY-T-SKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERL 281 (544)
Q Consensus 208 ei~~s~~~~~~----e~l~~~~~g~~~-~-s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~ 281 (544)
.++++...... ..+......... . +....+..+...+.. .+++.||+|||++.+.........
T Consensus 83 ~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~-----------~~~~~vlilDEi~~l~~~~~~~~~ 151 (387)
T 2v1u_A 83 YVNARHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSR-----------LRGIYIIVLDEIDFLPKRPGGQDL 151 (387)
T ss_dssp EEETTTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTT-----------SCSEEEEEEETTTHHHHSTTHHHH
T ss_pred EEECCcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhc-----------cCCeEEEEEccHhhhcccCCCChH
Confidence 99987543221 111111111100 0 111223333333221 145789999999987432101122
Q ss_pred HHHHHHHHhcC--CCcEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHH--hCCCCC
Q 009072 282 RQCLLLLVRST--HIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQ--EQYSLS 357 (544)
Q Consensus 282 ~~~L~~~~~~~--~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~--e~~~i~ 357 (544)
...+....+.. ..++++|++++.. +. ...+ ...+.+|+....+.|+|++.+++..+|...+.. .+..++
T Consensus 152 l~~l~~~~~~~~~~~~~~~I~~t~~~----~~-~~~l--~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~ 224 (387)
T 2v1u_A 152 LYRITRINQELGDRVWVSLVGITNSL----GF-VENL--EPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLD 224 (387)
T ss_dssp HHHHHHGGGCC-----CEEEEECSCS----TT-SSSS--CHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBC
T ss_pred HHhHhhchhhcCCCceEEEEEEECCC----ch-Hhhh--CHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCC
Confidence 22233333321 2333444433221 00 0111 134455543468999999999999999999876 456789
Q ss_pred HHHHHHHHHHcC---CcHHHHHHHHHHhcc
Q 009072 358 TEQIDLVAQASG---GDIRQAITSLQFSSL 384 (544)
Q Consensus 358 ~~~l~~Ia~~s~---GDiR~aIn~Lq~~~~ 384 (544)
+++++.+++.++ ||+|.+++.|+.+..
T Consensus 225 ~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~ 254 (387)
T 2v1u_A 225 PDVVPLCAALAAREHGDARRALDLLRVAGE 254 (387)
T ss_dssp SSHHHHHHHHHHSSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 999999999998 999999999988754
No 40
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.70 E-value=5e-16 Score=152.63 Aligned_cols=207 Identities=14% Similarity=0.173 Sum_probs=131.7
Q ss_pred CcccccCCCCcchhccChHHHHHHHHHHHHhhcCCC-----CCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCC
Q 009072 138 LWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSK-----DKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTP 212 (544)
Q Consensus 138 lW~eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~-----g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s 212 (544)
+|.+++++.+|++++|.+..++++.+.+.. ...+. +...++.++|+|||||||||+|+++|++++.+++.++.+
T Consensus 1 ~~~~~~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~ 79 (257)
T 1lv7_A 1 MLTEDQIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGS 79 (257)
T ss_dssp CEEECSSCCCGGGSCSCHHHHHHTHHHHHH-HHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSC
T ss_pred CCCccCCCCCHHHhcCcHHHHHHHHHHHHH-HhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHH
Confidence 699999999999999999999999887654 22111 222337899999999999999999999999999999876
Q ss_pred CchhhhhhhhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCch---------hHHHHHHH
Q 009072 213 TPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGR---------TAFERLRQ 283 (544)
Q Consensus 213 ~~~~~~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~---------~~~~~~~~ 283 (544)
+... .........+..+++.+.. ..+.+++|||+|.+... ....+..+
T Consensus 80 ~~~~-----------~~~~~~~~~~~~~~~~a~~------------~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ 136 (257)
T 1lv7_A 80 DFVE-----------MFVGVGASRVRDMFEQAKK------------AAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLN 136 (257)
T ss_dssp SSTT-----------SCCCCCHHHHHHHHHHHHT------------TCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHH
T ss_pred HHHH-----------HhhhhhHHHHHHHHHHHHH------------cCCeeehhhhhhhhccCCCCCcCCCchHHHHHHH
Confidence 5321 1111223456666766542 23789999999765321 11223333
Q ss_pred HHHHHHhc--CCCcEEEEEccCCCCCCCCccccchHHHHHHHh--hcCceeEEecCCCHHHHHHHHHHHHHHhCCCCCHH
Q 009072 284 CLLLLVRS--THIPTAVVLTECGKADSVDSTAQSFEELQSILV--DAGARKVALNPITNGSIKRTLSKICRQEQYSLSTE 359 (544)
Q Consensus 284 ~L~~~~~~--~~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~--r~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~ 359 (544)
.++..++. ...++++|+++..... .+ +++++ |+ ...+.|.+|+.++...+++..+....+. ++.
T Consensus 137 ~ll~~l~~~~~~~~~~vI~~tn~~~~-l~---------~~l~r~~rf-~~~i~i~~P~~~~r~~il~~~~~~~~l~-~~~ 204 (257)
T 1lv7_A 137 QMLVEMDGFEGNEGIIVIAATNRPDV-LD---------PALLRPGRF-DRQVVVGLPDVRGREQILKVHMRRVPLA-PDI 204 (257)
T ss_dssp HHHHHHHTCCSSSCEEEEEEESCTTT-SC---------GGGGSTTSS-CEEEECCCCCHHHHHHHHHHHHTTSCBC-TTC
T ss_pred HHHHHhhCcccCCCEEEEEeeCCchh-CC---------HHHcCCCcC-CeEEEeCCCCHHHHHHHHHHHHhcCCCC-ccc
Confidence 34444442 2334566665533211 11 12222 22 4578999999999999888876554322 223
Q ss_pred HHHHHHHHcCC-cHHHHHHHHH
Q 009072 360 QIDLVAQASGG-DIRQAITSLQ 380 (544)
Q Consensus 360 ~l~~Ia~~s~G-DiR~aIn~Lq 380 (544)
.+..++..+.| +.|...+.++
T Consensus 205 ~~~~la~~~~G~~~~dl~~l~~ 226 (257)
T 1lv7_A 205 DAAIIARGTPGFSGADLANLVN 226 (257)
T ss_dssp CHHHHHHTCTTCCHHHHHHHHH
T ss_pred cHHHHHHHcCCCCHHHHHHHHH
Confidence 36778888888 5544444333
No 41
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.68 E-value=7.2e-16 Score=157.65 Aligned_cols=195 Identities=15% Similarity=0.117 Sum_probs=124.5
Q ss_pred ccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCCc-h-hhhh-------hhh
Q 009072 152 AVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTP-T-IWQE-------YMH 222 (544)
Q Consensus 152 v~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~~-~-~~~e-------~l~ 222 (544)
..++...+.+...++. |+.+ +.+||+||||+|||++|+.+|+.+......-..+.. + .... .+.
T Consensus 5 pw~~~~~~~l~~~i~~------~~~~-~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~ 77 (334)
T 1a5t_A 5 PWLRPDFEKLVASYQA------GRGH-HALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYY 77 (334)
T ss_dssp GGGHHHHHHHHHHHHT------TCCC-SEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEE
T ss_pred CchHHHHHHHHHHHHc------CCcc-eeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEE
Confidence 3556666777666654 5554 789999999999999999999998654210000000 0 0000 000
Q ss_pred ccccC-cccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHHHHHhcCCCcEEEEEc
Q 009072 223 NCKTG-LEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPTAVVLT 301 (544)
Q Consensus 223 ~~~~g-~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~~~~~~~~piIiI~t 301 (544)
..... .+.....+.++++++.+...+ ..++++|+||||+|.++.. ..++|++.++.....+++|++
T Consensus 78 ~~~~~~~~~~~~i~~ir~l~~~~~~~~--------~~~~~kvviIdead~l~~~-----a~naLLk~lEep~~~~~~Il~ 144 (334)
T 1a5t_A 78 TLAPEKGKNTLGVDAVREVTEKLNEHA--------RLGGAKVVWVTDAALLTDA-----AANALLKTLEEPPAETWFFLA 144 (334)
T ss_dssp EECCCTTCSSBCHHHHHHHHHHTTSCC--------TTSSCEEEEESCGGGBCHH-----HHHHHHHHHTSCCTTEEEEEE
T ss_pred EEeccccCCCCCHHHHHHHHHHHhhcc--------ccCCcEEEEECchhhcCHH-----HHHHHHHHhcCCCCCeEEEEE
Confidence 00000 001122355666665543221 1245789999999998753 246688888876554554443
Q ss_pred cCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHH
Q 009072 302 ECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIRQAITSLQF 381 (544)
Q Consensus 302 ~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~l~~Ia~~s~GDiR~aIn~Lq~ 381 (544)
+... . ..++++.+| |..+.|.+++.+++.++|..++ .+++++++.++..++||+|.|++.|+.
T Consensus 145 t~~~-------~---~l~~ti~SR--c~~~~~~~~~~~~~~~~L~~~~-----~~~~~~~~~l~~~s~G~~r~a~~~l~~ 207 (334)
T 1a5t_A 145 TREP-------E---RLLATLRSR--CRLHYLAPPPEQYAVTWLSREV-----TMSQDALLAALRLSAGSPGAALALFQG 207 (334)
T ss_dssp ESCG-------G---GSCHHHHTT--SEEEECCCCCHHHHHHHHHHHC-----CCCHHHHHHHHHHTTTCHHHHHHTTSS
T ss_pred eCCh-------H---hCcHHHhhc--ceeeeCCCCCHHHHHHHHHHhc-----CCCHHHHHHHHHHcCCCHHHHHHHhcc
Confidence 3211 1 113455554 8999999999999999998764 679999999999999999999998875
Q ss_pred hc
Q 009072 382 SS 383 (544)
Q Consensus 382 ~~ 383 (544)
..
T Consensus 208 ~~ 209 (334)
T 1a5t_A 208 DN 209 (334)
T ss_dssp HH
T ss_pred ch
Confidence 43
No 42
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.68 E-value=9.3e-17 Score=161.88 Aligned_cols=209 Identities=13% Similarity=0.186 Sum_probs=136.5
Q ss_pred ccccCCCCcchhccChHHHHHHHHHHHHhhcCCC-----CCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCCc
Q 009072 140 AEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSK-----DKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTP 214 (544)
Q Consensus 140 ~eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~-----g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~~ 214 (544)
+.++++.++++++|.+..+++|++++......+. |..+++.+||+||||||||++|+++|++++..++.+++++.
T Consensus 6 ~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l 85 (301)
T 3cf0_A 6 VVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPEL 85 (301)
T ss_dssp CEECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHH
T ss_pred cccCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHH
Confidence 4567889999999999999999999876432211 33445889999999999999999999999999999876542
Q ss_pred hhhhhhhhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchh---------HHHHHHHHH
Q 009072 215 TIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRT---------AFERLRQCL 285 (544)
Q Consensus 215 ~~~~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~---------~~~~~~~~L 285 (544)
. .... | .....+..++..+... .|.||||||+|.+.... ...++.+.|
T Consensus 86 ~--~~~~-----g----~~~~~~~~~f~~a~~~------------~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~l 142 (301)
T 3cf0_A 86 L--TMWF-----G----ESEANVREIFDKARQA------------APCVLFFDELDSIAKARGGNIGDGGGAADRVINQI 142 (301)
T ss_dssp H--HHHH-----T----TCTTHHHHHHHHHHHT------------CSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHH
T ss_pred H--hhhc-----C----chHHHHHHHHHHHHhc------------CCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHH
Confidence 1 1111 1 1123456667666533 37899999999763211 112334445
Q ss_pred HHHHhc--CCCcEEEEEccCCCCCCCCccccchHHH-HHHHh--hcCceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHH
Q 009072 286 LLLVRS--THIPTAVVLTECGKADSVDSTAQSFEEL-QSILV--DAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQ 360 (544)
Q Consensus 286 ~~~~~~--~~~piIiI~t~~~~~~~~d~~~~~l~~l-~~ll~--r~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~ 360 (544)
+..++. ....+++|++++.. ..+ +++++ |+ ...|.|++|+.++...+++..+...++. .+..
T Consensus 143 L~~l~~~~~~~~v~vi~atn~~-----------~~ld~al~r~gRf-~~~i~i~~p~~~~r~~il~~~l~~~~~~-~~~~ 209 (301)
T 3cf0_A 143 LTEMDGMSTKKNVFIIGATNRP-----------DIIDPAILRPGRL-DQLIYIPLPDEKSRVAILKANLRKSPVA-KDVD 209 (301)
T ss_dssp HHHHHSSCTTSSEEEEEEESCG-----------GGSCGGGGSTTSS-CEEEECCCCCHHHHHHHHHHHHTTSCBC-SSCC
T ss_pred HHHhhcccCCCCEEEEEecCCc-----------cccChHHhcCCcc-ceEEecCCcCHHHHHHHHHHHHccCCCC-ccch
Confidence 555542 22345666554321 111 23344 32 3589999999999999999888766542 2223
Q ss_pred HHHHHHHc----CCcHHHHHHHHHHhcc
Q 009072 361 IDLVAQAS----GGDIRQAITSLQFSSL 384 (544)
Q Consensus 361 l~~Ia~~s----~GDiR~aIn~Lq~~~~ 384 (544)
++.++..+ ++||+.+++...+.+.
T Consensus 210 ~~~la~~~~g~sg~dl~~l~~~a~~~a~ 237 (301)
T 3cf0_A 210 LEFLAKMTNGFSGADLTEICQRACKLAI 237 (301)
T ss_dssp HHHHHHTCSSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 45566554 4588888877666654
No 43
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.65 E-value=1.8e-15 Score=149.99 Aligned_cols=194 Identities=16% Similarity=0.191 Sum_probs=123.6
Q ss_pred hccChHHHHHHHHH---HHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCCchhhhhhhhccccC
Q 009072 151 LAVQRKKVEEVRAW---FEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIWQEYMHNCKTG 227 (544)
Q Consensus 151 Lv~~~~~~~~l~~w---L~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~~~~~~e~l~~~~~g 227 (544)
+++....++++... +...+... +..+.+.+||+||||||||++|+++|++++.+++.+++++. ..|
T Consensus 35 ~i~~~~~~~~i~~~~~~l~~~l~~~-~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~----------~~g 103 (272)
T 1d2n_A 35 IIKWGDPVTRVLDDGELLVQQTKNS-DRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDK----------MIG 103 (272)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHHHHC-SSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGG----------CTT
T ss_pred CCCccHHHHHHHHHHHHHHHHHhcc-CCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHH----------hcC
Confidence 45665555555542 22222111 22334799999999999999999999999999999987651 112
Q ss_pred cccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCch-----hHHHHHHHHHHHHHhc---CCCcEEEE
Q 009072 228 LEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGR-----TAFERLRQCLLLLVRS---THIPTAVV 299 (544)
Q Consensus 228 ~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~-----~~~~~~~~~L~~~~~~---~~~piIiI 299 (544)
.........+...+..+.. ..+.||+|||+|.+.+. .....+++.|..+++. ...++++|
T Consensus 104 ~~~~~~~~~~~~~~~~~~~------------~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii 171 (272)
T 1d2n_A 104 FSETAKCQAMKKIFDDAYK------------SQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLII 171 (272)
T ss_dssp CCHHHHHHHHHHHHHHHHT------------SSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEE
T ss_pred CchHHHHHHHHHHHHHHHh------------cCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEE
Confidence 1111122344555555432 24789999999876211 1123455666666664 23345566
Q ss_pred EccCCCCCCCCccccchHHHHH--HHhhcCceeEEecCCCH-HHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-----c
Q 009072 300 LTECGKADSVDSTAQSFEELQS--ILVDAGARKVALNPITN-GSIKRTLSKICRQEQYSLSTEQIDLVAQASGG-----D 371 (544)
Q Consensus 300 ~t~~~~~~~~d~~~~~l~~l~~--ll~r~~~~~I~f~p~s~-~~i~~~L~~i~~~e~~~i~~~~l~~Ia~~s~G-----D 371 (544)
+++.. ...+.. +.+|+ +..|.|++++. +++..++.+ . ..++++.+..|++.+.| |
T Consensus 172 ~ttn~-----------~~~l~~~~l~~rf-~~~i~~p~l~~r~~i~~i~~~----~-~~~~~~~~~~l~~~~~g~~~~g~ 234 (272)
T 1d2n_A 172 GTTSR-----------KDVLQEMEMLNAF-STTIHVPNIATGEQLLEALEL----L-GNFKDKERTTIAQQVKGKKVWIG 234 (272)
T ss_dssp EEESC-----------HHHHHHTTCTTTS-SEEEECCCEEEHHHHHHHHHH----H-TCSCHHHHHHHHHHHTTSEEEEC
T ss_pred EecCC-----------hhhcchhhhhccc-ceEEcCCCccHHHHHHHHHHh----c-CCCCHHHHHHHHHHhcCCCcccc
Confidence 55421 122333 33443 67899988887 666655543 2 35789999999999988 9
Q ss_pred HHHHHHHHHHhcc
Q 009072 372 IRQAITSLQFSSL 384 (544)
Q Consensus 372 iR~aIn~Lq~~~~ 384 (544)
+|.++|.++.+..
T Consensus 235 ir~l~~~l~~a~~ 247 (272)
T 1d2n_A 235 IKKLLMLIEMSLQ 247 (272)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhh
Confidence 9999999999864
No 44
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.65 E-value=4.3e-16 Score=174.18 Aligned_cols=201 Identities=17% Similarity=0.232 Sum_probs=136.6
Q ss_pred cCCCCcchhccChHHHHHHHHHHHHhhcCCC-----CCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCCchhh
Q 009072 143 YKPRSLEELAVQRKKVEEVRAWFEERLGDSK-----DKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIW 217 (544)
Q Consensus 143 y~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~-----g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~~~~~ 217 (544)
....+|+|++|.++.+++|++++...+..+. |..+++.+|||||||||||++|+++|+++|.+++++++++.
T Consensus 198 ~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l--- 274 (806)
T 3cf2_A 198 LNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEI--- 274 (806)
T ss_dssp SSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHH---
T ss_pred CCCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHh---
Confidence 3457999999999999999999877655432 54556999999999999999999999999999999987642
Q ss_pred hhhhhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCch------hHHHHHHHHHHHHHhc
Q 009072 218 QEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGR------TAFERLRQCLLLLVRS 291 (544)
Q Consensus 218 ~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~------~~~~~~~~~L~~~~~~ 291 (544)
.+..+......++..++.+... .|+||||||+|.+... ...+++.+.|+..++.
T Consensus 275 --------~sk~~gese~~lr~lF~~A~~~------------~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg 334 (806)
T 3cf2_A 275 --------MSKLAGESESNLRKAFEEAEKN------------APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDG 334 (806)
T ss_dssp --------HSSCTTHHHHHHHHHHHHHTTS------------CSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHH
T ss_pred --------hcccchHHHHHHHHHHHHHHHc------------CCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhc
Confidence 1223334456788888887543 4899999999987432 1234455445544443
Q ss_pred C--CCcEEEEEccCCCCCCCCccccchHHHHHHHh--hcCceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 009072 292 T--HIPTAVVLTECGKADSVDSTAQSFEELQSILV--DAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQA 367 (544)
Q Consensus 292 ~--~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~--r~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~l~~Ia~~ 367 (544)
- ..++++|++++.. +..| +++++ |+ ...|.+..|+..+...+|+..+....+. ++..+..||..
T Consensus 335 ~~~~~~V~VIaaTN~~-d~LD---------~ALrR~GRF-d~~I~i~~Pd~~~R~~IL~~~l~~~~~~-~dvdl~~lA~~ 402 (806)
T 3cf2_A 335 LKQRAHVIVMAATNRP-NSID---------PALRRFGRF-DREVDIGIPDATGRLEILQIHTKNMKLA-DDVDLEQVANE 402 (806)
T ss_dssp CCGGGCEEEEEECSST-TTSC---------TTTTSTTSS-CEEEECCCCCHHHHHHHHHHTCSSSEEC-TTCCHHHHHHH
T ss_pred ccccCCEEEEEecCCh-hhcC---------HHHhCCccc-ceEEecCCCCHHHHHHHHHHHhcCCCCC-cccCHHHHHHh
Confidence 2 2346666555332 2222 12222 22 5689999999999999988665433221 23347788888
Q ss_pred cCC----cHHHHHHH
Q 009072 368 SGG----DIRQAITS 378 (544)
Q Consensus 368 s~G----DiR~aIn~ 378 (544)
+.| ||...++.
T Consensus 403 T~GfsgaDL~~Lv~e 417 (806)
T 3cf2_A 403 THGHVGADLAALCSE 417 (806)
T ss_dssp CCSCCHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHH
Confidence 665 66655443
No 45
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.65 E-value=4.3e-15 Score=149.42 Aligned_cols=210 Identities=15% Similarity=0.194 Sum_probs=133.5
Q ss_pred hhccChHHHHHHHHHHHHhhcCCC-------CCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCCchhhhhhhh
Q 009072 150 ELAVQRKKVEEVRAWFEERLGDSK-------DKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIWQEYMH 222 (544)
Q Consensus 150 dLv~~~~~~~~l~~wL~~~~~~~~-------g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~~~~~~e~l~ 222 (544)
+++|++..++.+...+........ +. .++.+||+||||||||++|+++|+.++.+++.++++....
T Consensus 16 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~-~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~------ 88 (310)
T 1ofh_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEV-TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTE------ 88 (310)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHC-CCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSS------
T ss_pred hcCChHHHHHHHHHHHHHHHhhhhhcccccccC-CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhccc------
Confidence 478999999999988876321100 12 2368999999999999999999999999999998765221
Q ss_pred ccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchh-------HHHHHHHHHHHHHhcCC--
Q 009072 223 NCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRT-------AFERLRQCLLLLVRSTH-- 293 (544)
Q Consensus 223 ~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~-------~~~~~~~~L~~~~~~~~-- 293 (544)
.+.........+..++..+... + .....+.||||||+|.+.... ....+++.|+.+++...
T Consensus 89 ---~~~~~~~~~~~~~~~~~~~~~~--~-----~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~ 158 (310)
T 1ofh_A 89 ---VGYVGKEVDSIIRDLTDSAGGA--I-----DAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVS 158 (310)
T ss_dssp ---CCSGGGSTTHHHHHHHHTTTTC--H-----HHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEE
T ss_pred ---CCccCccHHHHHHHHHHHhhHH--H-----hhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEe
Confidence 0100001112233333311000 0 000125699999999875421 11224566777777531
Q ss_pred --------CcEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHH-----------HHHHhC-
Q 009072 294 --------IPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSK-----------ICRQEQ- 353 (544)
Q Consensus 294 --------~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~-----------i~~~e~- 353 (544)
..+++|+++..... . .....+++++|+ ...|.|++|+.+++..++.+ .+...+
T Consensus 159 ~~~~~~~~~~~~~i~~~~~~~~--~----~~~l~~~l~~R~-~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~ 231 (310)
T 1ofh_A 159 TKHGMVKTDHILFIASGAFQVA--R----PSDLIPELQGRL-PIRVELTALSAADFERILTEPHASLTEQYKALMATEGV 231 (310)
T ss_dssp ETTEEEECTTCEEEEEECCSSS--C----GGGSCHHHHHTC-CEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTC
T ss_pred cccccccCCcEEEEEcCCcccC--C----cccCCHHHHhhC-CceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCC
Confidence 24566665421100 0 111124566664 35799999999999999882 333344
Q ss_pred -CCCCHHHHHHHHHHc--------CCcHHHHHHHHHHhc
Q 009072 354 -YSLSTEQIDLVAQAS--------GGDIRQAITSLQFSS 383 (544)
Q Consensus 354 -~~i~~~~l~~Ia~~s--------~GDiR~aIn~Lq~~~ 383 (544)
+.+++++++.|++.+ .||+|.+.+.++.+.
T Consensus 232 ~~~~~~~a~~~l~~~~~~~~~~~~~g~~R~l~~~l~~~~ 270 (310)
T 1ofh_A 232 NIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLM 270 (310)
T ss_dssp EEEECHHHHHHHHHHHHHHHHHSCCCTTHHHHHHHHHHS
T ss_pred eeccCHHHHHHHHHHhhhhcccccccCcHHHHHHHHHHH
Confidence 368999999999998 899999999999876
No 46
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.63 E-value=2.2e-15 Score=151.77 Aligned_cols=169 Identities=9% Similarity=0.093 Sum_probs=116.5
Q ss_pred cChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHh------CCeEEEEeCCCchhhhhhhhcccc
Q 009072 153 VQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL------GARLYEWDTPTPTIWQEYMHNCKT 226 (544)
Q Consensus 153 ~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~el------g~~viei~~s~~~~~~e~l~~~~~ 226 (544)
|+++.++.|...++. |+ . +++||+||||+|||++|+++|+.+ ..+++++++++.
T Consensus 1 g~~~~~~~L~~~i~~------~~-~-~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~------------ 60 (305)
T 2gno_A 1 GAKDQLETLKRIIEK------SE-G-ISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGE------------ 60 (305)
T ss_dssp ---CHHHHHHHHHHT------CS-S-EEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSS------------
T ss_pred ChHHHHHHHHHHHHC------CC-C-cEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcC------------
Confidence 567778888887765 55 2 799999999999999999999974 345666654320
Q ss_pred CcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHHHHHhcCCCcEEEEEccCCCC
Q 009072 227 GLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPTAVVLTECGKA 306 (544)
Q Consensus 227 g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~~~~~~~~piIiI~t~~~~~ 306 (544)
....+.++++++.+...+. .++.+|+||||+|.+... .+++|++.++..+..++||..+...
T Consensus 61 ----~~~id~ir~li~~~~~~p~--------~~~~kvviIdead~lt~~-----a~naLLk~LEep~~~t~fIl~t~~~- 122 (305)
T 2gno_A 61 ----NIGIDDIRTIKDFLNYSPE--------LYTRKYVIVHDCERMTQQ-----AANAFLKALEEPPEYAVIVLNTRRW- 122 (305)
T ss_dssp ----CBCHHHHHHHHHHHTSCCS--------SSSSEEEEETTGGGBCHH-----HHHHTHHHHHSCCTTEEEEEEESCG-
T ss_pred ----CCCHHHHHHHHHHHhhccc--------cCCceEEEeccHHHhCHH-----HHHHHHHHHhCCCCCeEEEEEECCh-
Confidence 1123567777776643221 134789999999998653 2467888888876545555443211
Q ss_pred CCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHH
Q 009072 307 DSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIRQAITSLQF 381 (544)
Q Consensus 307 ~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~l~~Ia~~s~GDiR~aIn~Lq~ 381 (544)
. ..++++.+| .++|.|++.+++.++|.+++ + ++++++ ..++||+|.|+|.||.
T Consensus 123 ------~---kl~~tI~SR----~~~f~~l~~~~i~~~L~~~~---~--i~~~~~----~~~~g~~~~al~~l~~ 175 (305)
T 2gno_A 123 ------H---YLLPTIKSR----VFRVVVNVPKEFRDLVKEKI---G--DLWEEL----PLLERDFKTALEAYKL 175 (305)
T ss_dssp ------G---GSCHHHHTT----SEEEECCCCHHHHHHHHHHH---T--THHHHC----GGGGTCHHHHHHHHHH
T ss_pred ------H---hChHHHHce----eEeCCCCCHHHHHHHHHHHh---C--CCHHHH----HHHCCCHHHHHHHHHH
Confidence 1 123455554 89999999999999999987 2 566655 4479999999999873
No 47
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.62 E-value=2.6e-15 Score=155.41 Aligned_cols=223 Identities=16% Similarity=0.237 Sum_probs=138.1
Q ss_pred CCCcccccCCCCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHh------CCeEEEE
Q 009072 136 QQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL------GARLYEW 209 (544)
Q Consensus 136 ~~lW~eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~el------g~~viei 209 (544)
...|..+|.| ++++|+++.++.+..++..... +.. ++.++|+||||+||||+++.+++++ +..++.+
T Consensus 10 ~~~l~~~~~p---~~~~gr~~e~~~l~~~l~~~~~---~~~-~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i 82 (386)
T 2qby_A 10 REYLLPDYIP---DELPHREDQIRKIASILAPLYR---EEK-PNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYI 82 (386)
T ss_dssp GGGGSSSCCC---SCCTTCHHHHHHHHHSSGGGGG---TCC-CCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEE
T ss_pred hhhCCCccCC---CCCCChHHHHHHHHHHHHHHHc---CCC-CCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEE
Confidence 3455667877 5679999999999999876543 222 2689999999999999999999998 8899988
Q ss_pred eCCCchhhhhhhhcccc--Ccc--c-c-cchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHH
Q 009072 210 DTPTPTIWQEYMHNCKT--GLE--Y-T-SKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQ 283 (544)
Q Consensus 210 ~~s~~~~~~e~l~~~~~--g~~--~-~-s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~ 283 (544)
++.........+..... +.. . . +....+..+...+... +.+.||+|||++.+..... ..+..
T Consensus 83 ~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~-----------~~~~vlilDE~~~l~~~~~-~~~l~ 150 (386)
T 2qby_A 83 NTRQIDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDY-----------GSQVVIVLDEIDAFVKKYN-DDILY 150 (386)
T ss_dssp EHHHHCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTC-----------CSCEEEEEETHHHHHHSSC-STHHH
T ss_pred ECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhcc-----------CCeEEEEEcChhhhhccCc-CHHHH
Confidence 86432211111111111 110 0 0 1112233333333211 3478999999998642100 11223
Q ss_pred HHHHHHhc-CCCcEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHHh--CCCCCHHH
Q 009072 284 CLLLLVRS-THIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQE--QYSLSTEQ 360 (544)
Q Consensus 284 ~L~~~~~~-~~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e--~~~i~~~~ 360 (544)
.|...++. ...++.+|+++... + ....+ ...+.+++....+.|+|++.+++..+|...+... ...+++++
T Consensus 151 ~l~~~~~~~~~~~~~~I~~~~~~----~-~~~~~--~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~ 223 (386)
T 2qby_A 151 KLSRINSEVNKSKISFIGITNDV----K-FVDLL--DPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNV 223 (386)
T ss_dssp HHHHHHHSCCC--EEEEEEESCG----G-GGGGC--TTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHH
T ss_pred HHhhchhhcCCCeEEEEEEECCC----C-hHhhh--CHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHH
Confidence 34444432 22344444443211 0 00111 1233444333689999999999999999988653 35789999
Q ss_pred HHHHHHHcC---CcHHHHHHHHHHhcc
Q 009072 361 IDLVAQASG---GDIRQAITSLQFSSL 384 (544)
Q Consensus 361 l~~Ia~~s~---GDiR~aIn~Lq~~~~ 384 (544)
++.|+..++ ||+|.+++.++.++.
T Consensus 224 ~~~l~~~~~~~~G~~r~~~~ll~~a~~ 250 (386)
T 2qby_A 224 IKLCAALAAREHGDARRALDLLRVSGE 250 (386)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 999999988 999999998887653
No 48
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.62 E-value=6e-15 Score=156.70 Aligned_cols=213 Identities=14% Similarity=0.216 Sum_probs=133.8
Q ss_pred CCcccc-cCCCCcchhccChHHHHHHHHHHHHhhcC----CCCCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeC
Q 009072 137 QLWAEK-YKPRSLEELAVQRKKVEEVRAWFEERLGD----SKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDT 211 (544)
Q Consensus 137 ~lW~ek-y~P~~~~dLv~~~~~~~~l~~wL~~~~~~----~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~ 211 (544)
.+|.+. ..+.+|+|++|.++.++++++++...... .-|...++.+||+||||||||++|+++|.+++.+++.++.
T Consensus 3 ~~~~~~~~~~~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~ 82 (476)
T 2ce7_A 3 TMYKPSGNKRVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISG 82 (476)
T ss_dssp --CCCCCSCCCCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEG
T ss_pred ceeccCCCCCCCHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCH
Confidence 345556 55679999999999999999887653210 0122233789999999999999999999999999999987
Q ss_pred CCchhhhhhhhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchh---------HHHHHH
Q 009072 212 PTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRT---------AFERLR 282 (544)
Q Consensus 212 s~~~~~~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~---------~~~~~~ 282 (544)
++... .........++..+..+... .|+||||||+|.+.... ...+.+
T Consensus 83 ~~~~~-----------~~~g~~~~~~r~lf~~A~~~------------~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l 139 (476)
T 2ce7_A 83 SDFVE-----------LFVGVGAARVRDLFAQAKAH------------APCIVFIDEIDAVGRHRGAGLGGGHDEREQTL 139 (476)
T ss_dssp GGTTT-----------CCTTHHHHHHHHHHHHHHHT------------CSEEEEEETGGGTCCC---------CHHHHHH
T ss_pred HHHHH-----------HHhcccHHHHHHHHHHHHhc------------CCCEEEEechhhhhhhcccccCcCcHHHHHHH
Confidence 65211 11111234566777776543 48899999999874421 112233
Q ss_pred HHHHHHHhc--CCCcEEEEEccCCCCCCCCccccchHHHHHHHh--hcCceeEEecCCCHHHHHHHHHHHHHHhCCCCCH
Q 009072 283 QCLLLLVRS--THIPTAVVLTECGKADSVDSTAQSFEELQSILV--DAGARKVALNPITNGSIKRTLSKICRQEQYSLST 358 (544)
Q Consensus 283 ~~L~~~~~~--~~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~--r~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~ 358 (544)
+.|+..++. ...++++|+++... +. ++ +++++ |+ ...|.|.+|+..+...+|+..+....+. ++
T Consensus 140 ~~LL~~ld~~~~~~~viVIaaTn~~-~~-------Ld--~allR~gRF-d~~i~i~~Pd~~~R~~Il~~~~~~~~l~-~~ 207 (476)
T 2ce7_A 140 NQLLVEMDGFDSKEGIIVMAATNRP-DI-------LD--PALLRPGRF-DKKIVVDPPDMLGRKKILEIHTRNKPLA-ED 207 (476)
T ss_dssp HHHHHHHHHSCGGGTEEEEEEESCG-GG-------SC--GGGGSTTSS-CEEEECCCCCHHHHHHHHHHHHTTSCBC-TT
T ss_pred HHHHHHHhccCCCCCEEEEEecCCh-hh-------hc--hhhcccCcc-eeEeecCCCCHHHHHHHHHHHHHhCCCc-ch
Confidence 334443432 22346666655321 10 11 12333 32 3488999999999999888776554322 22
Q ss_pred HHHHHHHHHcCC----cHHHHHHHHHHhcc
Q 009072 359 EQIDLVAQASGG----DIRQAITSLQFSSL 384 (544)
Q Consensus 359 ~~l~~Ia~~s~G----DiR~aIn~Lq~~~~ 384 (544)
..+..|+..+.| ||+.+++..-..+.
T Consensus 208 v~l~~la~~t~G~sgadL~~lv~~Aal~A~ 237 (476)
T 2ce7_A 208 VNLEIIAKRTPGFVGADLENLVNEAALLAA 237 (476)
T ss_dssp CCHHHHHHTCTTCCHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 237778888877 56666665555544
No 49
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.62 E-value=9.3e-15 Score=148.59 Aligned_cols=199 Identities=18% Similarity=0.213 Sum_probs=126.0
Q ss_pred CCcchhc-c--ChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeCCCchhhhh
Q 009072 146 RSLEELA-V--QRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTPTPTIWQE 219 (544)
Q Consensus 146 ~~~~dLv-~--~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~el---g~~viei~~s~~~~~~e 219 (544)
.+|++++ | +......+..++... +. ..+.++|+|||||||||+++++++++ +.+++.+++.+.. .+
T Consensus 8 ~~f~~fv~g~~~~~a~~~~~~~~~~~-----~~-~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~--~~ 79 (324)
T 1l8q_A 8 YTLENFIVGEGNRLAYEVVKEALENL-----GS-LYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFA--QA 79 (324)
T ss_dssp CCSSSCCCCTTTHHHHHHHHHHHHTT-----TT-SCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHH--HH
T ss_pred CCcccCCCCCcHHHHHHHHHHHHhCc-----CC-CCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHH--HH
Confidence 4677776 3 444444555554431 21 22689999999999999999999998 8899888764321 01
Q ss_pred hhhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCch-hHHHHHHHHHHHHHhcCCCcEEE
Q 009072 220 YMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGR-TAFERLRQCLLLLVRSTHIPTAV 298 (544)
Q Consensus 220 ~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~-~~~~~~~~~L~~~~~~~~~piIi 298 (544)
....... .....|.... .++.||||||++.+... .....+...+..+.+.. . .++
T Consensus 80 ~~~~~~~--------~~~~~~~~~~--------------~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~-~-~ii 135 (324)
T 1l8q_A 80 MVEHLKK--------GTINEFRNMY--------------KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLE-K-QII 135 (324)
T ss_dssp HHHHHHH--------TCHHHHHHHH--------------HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTT-C-EEE
T ss_pred HHHHHHc--------CcHHHHHHHh--------------cCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCC-C-eEE
Confidence 0000000 0012222221 12569999999998653 22233444444444433 2 344
Q ss_pred EEccCCCCCCCCccccchHHHHHHHhhcC-ceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHH
Q 009072 299 VLTECGKADSVDSTAQSFEELQSILVDAG-ARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIRQAIT 377 (544)
Q Consensus 299 I~t~~~~~~~~d~~~~~l~~l~~ll~r~~-~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~l~~Ia~~s~GDiR~aIn 377 (544)
++++...... .. ....+.+|+. ...+.|+| +.+++..+|...+...++.+++++++.|+..+ ||+|.+.+
T Consensus 136 i~~~~~~~~l-----~~--l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~-g~~r~l~~ 206 (324)
T 1l8q_A 136 LASDRHPQKL-----DG--VSDRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELRKEVIDYLLENT-KNVREIEG 206 (324)
T ss_dssp EEESSCGGGC-----TT--SCHHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC-SSHHHHHH
T ss_pred EEecCChHHH-----HH--hhhHhhhcccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC-CCHHHHHH
Confidence 4444221100 00 1134444421 26799999 99999999999999999999999999999999 99999999
Q ss_pred HHHHhccC
Q 009072 378 SLQFSSLK 385 (544)
Q Consensus 378 ~Lq~~~~~ 385 (544)
.|+.++..
T Consensus 207 ~l~~~~~~ 214 (324)
T 1l8q_A 207 KIKLIKLK 214 (324)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 99887653
No 50
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.60 E-value=2.7e-15 Score=160.53 Aligned_cols=205 Identities=17% Similarity=0.223 Sum_probs=135.5
Q ss_pred cccCCCCcchhccChHHHHHHHHHHHHhhcCCC-----CCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCCch
Q 009072 141 EKYKPRSLEELAVQRKKVEEVRAWFEERLGDSK-----DKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPT 215 (544)
Q Consensus 141 eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~-----g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~~~ 215 (544)
+.+++.++++++|.+..+++|++++......+. |..+++.+||+||||||||++|+++|++++.+++.+++++..
T Consensus 196 ~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~ 275 (489)
T 3hu3_A 196 ESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM 275 (489)
T ss_dssp HHHTCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHH
T ss_pred cccCCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhh
Confidence 356778999999999999999999876533211 233447899999999999999999999999999999865421
Q ss_pred hhhhhhhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCc------hhHHHHHHHHHHHHH
Q 009072 216 IWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNG------RTAFERLRQCLLLLV 289 (544)
Q Consensus 216 ~~~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~------~~~~~~~~~~L~~~~ 289 (544)
+.........+...+..+... .|.+|||||+|.+.. .....+++..|+.++
T Consensus 276 -----------~~~~g~~~~~~~~~f~~A~~~------------~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~l 332 (489)
T 3hu3_A 276 -----------SKLAGESESNLRKAFEEAEKN------------APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLM 332 (489)
T ss_dssp -----------TSCTTHHHHHHHHHHHHHHHT------------CSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHH
T ss_pred -----------hhhcchhHHHHHHHHHHHHhc------------CCcEEEecchhhhccccccccchHHHHHHHHHHHHh
Confidence 111122334566677766533 478999999987643 122345556666666
Q ss_pred hc--CCCcEEEEEccCCCCCCCCccccchHHHHHHHhhcC-ceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 009072 290 RS--THIPTAVVLTECGKADSVDSTAQSFEELQSILVDAG-ARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQ 366 (544)
Q Consensus 290 ~~--~~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~-~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~l~~Ia~ 366 (544)
+. ....+++|++++... .+. .++.++.+ ...|.|.+|+..+...+|+..+....+. .+..+..++.
T Consensus 333 d~~~~~~~v~vIaaTn~~~--------~Ld--~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~-~~~~l~~la~ 401 (489)
T 3hu3_A 333 DGLKQRAHVIVMAATNRPN--------SID--PALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-DDVDLEQVAN 401 (489)
T ss_dssp HHSCTTSCEEEEEEESCGG--------GBC--GGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBC-TTCCHHHHHH
T ss_pred hccccCCceEEEEecCCcc--------ccC--HHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCc-chhhHHHHHH
Confidence 63 233566666553211 011 23333111 3479999999999999999876654433 2334678888
Q ss_pred HcCCcHHHHHHHH
Q 009072 367 ASGGDIRQAITSL 379 (544)
Q Consensus 367 ~s~GDiR~aIn~L 379 (544)
.+.|.....|..|
T Consensus 402 ~t~g~s~~dL~~L 414 (489)
T 3hu3_A 402 ETHGHVGADLAAL 414 (489)
T ss_dssp TCTTCCHHHHHHH
T ss_pred HccCCcHHHHHHH
Confidence 8888544444444
No 51
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.59 E-value=2.4e-14 Score=151.63 Aligned_cols=203 Identities=20% Similarity=0.256 Sum_probs=127.5
Q ss_pred cCCC-Ccchhc-cC--hHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHh-----CCeEEEEeCCC
Q 009072 143 YKPR-SLEELA-VQ--RKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL-----GARLYEWDTPT 213 (544)
Q Consensus 143 y~P~-~~~dLv-~~--~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~el-----g~~viei~~s~ 213 (544)
..|. +|++++ |+ ......+..+... + +. .+.++|+||||+||||+|+++++++ +..++.+++++
T Consensus 98 l~~~~tfd~fv~g~~n~~a~~~~~~~a~~----~-~~--~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~ 170 (440)
T 2z4s_A 98 LNPDYTFENFVVGPGNSFAYHAALEVAKH----P-GR--YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEK 170 (440)
T ss_dssp CCTTCSGGGCCCCTTTHHHHHHHHHHHHS----T-TS--SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHH
T ss_pred CCCCCChhhcCCCCchHHHHHHHHHHHhC----C-CC--CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHH
Confidence 3443 788887 43 3333333333322 1 22 2689999999999999999999998 78888877543
Q ss_pred chhhhhhhhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCch-hHHHHHHHHHHHHHhcC
Q 009072 214 PTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGR-TAFERLRQCLLLLVRST 292 (544)
Q Consensus 214 ~~~~~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~-~~~~~~~~~L~~~~~~~ 292 (544)
.. .+.......+ ....|... +. ..+.||||||++.+... .....+...+..+.+.+
T Consensus 171 ~~--~~~~~~~~~~--------~~~~~~~~---~~----------~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~ 227 (440)
T 2z4s_A 171 FL--NDLVDSMKEG--------KLNEFREK---YR----------KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSG 227 (440)
T ss_dssp HH--HHHHHHHHTT--------CHHHHHHH---HT----------TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTT
T ss_pred HH--HHHHHHHHcc--------cHHHHHHH---hc----------CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCC
Confidence 11 0001000000 01122221 11 14679999999998753 22334444455544433
Q ss_pred CCcEEEEEccCCCCCCCCccccchHHHHHHHhhcC-ceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCc
Q 009072 293 HIPTAVVLTECGKADSVDSTAQSFEELQSILVDAG-ARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGD 371 (544)
Q Consensus 293 ~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~-~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~l~~Ia~~s~GD 371 (544)
..|+|+++...... ..+ ...+++|+. ...+.|.+|+.+++..+|.+.+..+++.+++++++.|+..++||
T Consensus 228 --~~iIitt~~~~~~l-----~~l--~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e~l~~la~~~~gn 298 (440)
T 2z4s_A 228 --KQIVICSDREPQKL-----SEF--QDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEVLNFVAENVDDN 298 (440)
T ss_dssp --CEEEEEESSCGGGC-----SSC--CHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHCCSC
T ss_pred --CeEEEEECCCHHHH-----HHH--HHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCC
Confidence 24555554221110 001 134444421 25899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcc
Q 009072 372 IRQAITSLQFSSL 384 (544)
Q Consensus 372 iR~aIn~Lq~~~~ 384 (544)
+|.+.+.|+.+..
T Consensus 299 ~R~l~~~L~~~~~ 311 (440)
T 2z4s_A 299 LRRLRGAIIKLLV 311 (440)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987654
No 52
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.56 E-value=9.5e-15 Score=167.29 Aligned_cols=209 Identities=17% Similarity=0.158 Sum_probs=134.4
Q ss_pred CCCcccccCCCCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHh----------CCe
Q 009072 136 QQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL----------GAR 205 (544)
Q Consensus 136 ~~lW~eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~el----------g~~ 205 (544)
...|+++|+|.++++++|+++.++++..++.. +.. ++++|+||||||||++|+.+|+.+ +..
T Consensus 157 ~~~l~~~~r~~~ld~viGr~~~i~~l~~~l~~------~~~--~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~ 228 (854)
T 1qvr_A 157 GIDLTRLAAEGKLDPVIGRDEEIRRVIQILLR------RTK--NNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKR 228 (854)
T ss_dssp EEEHHHHHHTTCSCCCCSCHHHHHHHHHHHHC------SSC--CCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCE
T ss_pred HHhHHHHHhcCCCcccCCcHHHHHHHHHHHhc------CCC--CceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCe
Confidence 45689999999999999999999999888754 222 578999999999999999999998 888
Q ss_pred EEEEeCCCchhhhhhhhccccCccc-ccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHH---HHH
Q 009072 206 LYEWDTPTPTIWQEYMHNCKTGLEY-TSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAF---ERL 281 (544)
Q Consensus 206 viei~~s~~~~~~e~l~~~~~g~~~-~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~---~~~ 281 (544)
++.++.+.. ..|..+ ......+..++..+... ..+.||||||++.+.+.... ..+
T Consensus 229 ~~~l~~~~l----------~~g~~~~g~~~~~l~~~~~~~~~~-----------~~~~iL~IDEi~~l~~~~~~~g~~~~ 287 (854)
T 1qvr_A 229 IVSLQMGSL----------LAGAKYRGEFEERLKAVIQEVVQS-----------QGEVILFIDELHTVVGAGKAEGAVDA 287 (854)
T ss_dssp EEEECC---------------------CHHHHHHHHHHHHHTT-----------CSSEEEEECCC---------------
T ss_pred EEEeehHHh----------hccCccchHHHHHHHHHHHHHHhc-----------CCCeEEEEecHHHHhccCCccchHHH
Confidence 888876542 112222 12334566667666532 34789999999998532211 223
Q ss_pred HHHHHHHHhcCCCcEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHH----hCCCCC
Q 009072 282 RQCLLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQ----EQYSLS 357 (544)
Q Consensus 282 ~~~L~~~~~~~~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~----e~~~i~ 357 (544)
.+.|..++......+|..++. +.+.. +....++.+| +..|.|.+|+.+++..+|+.++.. .++.++
T Consensus 288 ~~~L~~~l~~~~i~~I~at~~-------~~~~~-~~~d~aL~rR--f~~i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~ 357 (854)
T 1qvr_A 288 GNMLKPALARGELRLIGATTL-------DEYRE-IEKDPALERR--FQPVYVDEPTVEETISILRGLKEKYEVHHGVRIS 357 (854)
T ss_dssp ----HHHHHTTCCCEEEEECH-------HHHHH-HTTCTTTCSC--CCCEEECCCCHHHHHHHHHHHHHHHHHHTTCEEC
T ss_pred HHHHHHHHhCCCeEEEEecCc-------hHHhh-hccCHHHHhC--CceEEeCCCCHHHHHHHHHhhhhhhhhhcCCCCC
Confidence 456777777765544433321 10100 1112344444 667999999999999999887764 378899
Q ss_pred HHHHHHHHHHcCCc------HHHHHHHHHHhc
Q 009072 358 TEQIDLVAQASGGD------IRQAITSLQFSS 383 (544)
Q Consensus 358 ~~~l~~Ia~~s~GD------iR~aIn~Lq~~~ 383 (544)
++++..++..++|. .+.++..+...+
T Consensus 358 ~~al~~~~~ls~r~i~~~~lp~kai~lldea~ 389 (854)
T 1qvr_A 358 DSAIIAAATLSHRYITERRLPDKAIDLIDEAA 389 (854)
T ss_dssp HHHHHHHHHHHHHHCCSSCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhcccccChHHHHHHHHHHH
Confidence 99999999987654 566777665554
No 53
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.56 E-value=2.7e-15 Score=160.23 Aligned_cols=199 Identities=19% Similarity=0.207 Sum_probs=133.8
Q ss_pred CCCCCcccccCCCCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHh----------C
Q 009072 134 STQQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL----------G 203 (544)
Q Consensus 134 ~~~~lW~eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~el----------g 203 (544)
.....|+++|+|.++++++|+++.++.+..++... ..+++||+||||||||++|+++|+.+ +
T Consensus 165 ~~~~~l~~~~r~~~ld~iiGr~~~i~~l~~~l~r~--------~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~ 236 (468)
T 3pxg_A 165 SLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRR--------TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRD 236 (468)
T ss_dssp SSCCBHHHHTTSSCSCCCCCCHHHHHHHHHHHHCS--------SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSS
T ss_pred HHHHHHHHHHhcCCCCCccCcHHHHHHHHHHHhcc--------CCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcC
Confidence 45678999999999999999999999999888641 12689999999999999999999997 6
Q ss_pred CeEEEEeCCCchhhhhhhhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHH
Q 009072 204 ARLYEWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQ 283 (544)
Q Consensus 204 ~~viei~~s~~~~~~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~ 283 (544)
..++.++.+. ...|. ....+..+++.+... .+.||||| .. ....+
T Consensus 237 ~~~~~l~~~~----------~~~g~----~e~~~~~~~~~~~~~------------~~~iLfiD-----~~----~~a~~ 281 (468)
T 3pxg_A 237 KRVMTLDMGT----------KYRGE----FEDRLKKVMDEIRQA------------GNIILFID-----AA----IDASN 281 (468)
T ss_dssp CCEECC------------------------CTTHHHHHHHHHTC------------CCCEEEEC-----C----------
T ss_pred CeEEEeeCCc----------cccch----HHHHHHHHHHHHHhc------------CCeEEEEe-----Cc----hhHHH
Confidence 6777666541 01111 113455666666432 36799999 11 12334
Q ss_pred HHHHHHhcCCCcEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHH----hCCCCCHH
Q 009072 284 CLLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQ----EQYSLSTE 359 (544)
Q Consensus 284 ~L~~~~~~~~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~----e~~~i~~~ 359 (544)
.|+..++.+. +.+|++++.. .+...+....++.+| +..|.|.+|+.+++..+|..++.. .++.++++
T Consensus 282 ~L~~~L~~g~--v~vI~at~~~-----e~~~~~~~~~al~~R--f~~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~ 352 (468)
T 3pxg_A 282 ILKPSLARGE--LQCIGATTLD-----EYRKYIEKDAALERR--FQPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDD 352 (468)
T ss_dssp --CCCTTSSS--CEEEEECCTT-----TTHHHHTTCSHHHHS--EEEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHH
T ss_pred HHHHhhcCCC--EEEEecCCHH-----HHHHHhhcCHHHHHh--CccceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHH
Confidence 5666666553 4455544321 111111222344454 778999999999999999988766 67889999
Q ss_pred HHHHHHHHcCCcH------HHHHHHHHHhcc
Q 009072 360 QIDLVAQASGGDI------RQAITSLQFSSL 384 (544)
Q Consensus 360 ~l~~Ia~~s~GDi------R~aIn~Lq~~~~ 384 (544)
++..++..+.+.+ +.||..|+..+.
T Consensus 353 al~~l~~~s~~~~~~~~lp~~ai~ll~~a~~ 383 (468)
T 3pxg_A 353 AIEAAVKLSDRYISDRFLPDKAIDLIDEAGS 383 (468)
T ss_dssp HHHHHHHHHHHSSCCSCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCcCCcHHHHHHHHHHH
Confidence 9999999877655 468888877664
No 54
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.55 E-value=8.2e-15 Score=135.84 Aligned_cols=171 Identities=18% Similarity=0.201 Sum_probs=107.5
Q ss_pred CCcccccCCCCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHh----------CCeE
Q 009072 137 QLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL----------GARL 206 (544)
Q Consensus 137 ~lW~eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~el----------g~~v 206 (544)
..|.++|+|.++++++|+++.++++..++.. +. ++.++|+||||+|||++|+.+++++ +..+
T Consensus 10 ~~l~~~~~~~~~~~~~g~~~~~~~l~~~l~~------~~--~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~ 81 (195)
T 1jbk_A 10 IDLTERAEQGKLDPVIGRDEEIRRTIQVLQR------RT--KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRV 81 (195)
T ss_dssp EEHHHHHHTTCSCCCCSCHHHHHHHHHHHTS------SS--SCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEE
T ss_pred HHHHHHHhhccccccccchHHHHHHHHHHhc------CC--CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcE
Confidence 4689999999999999999999999888754 22 2689999999999999999999997 6677
Q ss_pred EEEeCCCchhhhhhhhccccCccc-ccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhH---HHHHH
Q 009072 207 YEWDTPTPTIWQEYMHNCKTGLEY-TSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTA---FERLR 282 (544)
Q Consensus 207 iei~~s~~~~~~e~l~~~~~g~~~-~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~---~~~~~ 282 (544)
+.++.... ..+..+ ......+..++..+... ..+.||+|||++.+..... ...+.
T Consensus 82 ~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~vl~iDe~~~l~~~~~~~~~~~~~ 140 (195)
T 1jbk_A 82 LALDMGAL----------VAGAKYRGEFEERLKGVLNDLAKQ-----------EGNVILFIDELHTMVGAGKADGAMDAG 140 (195)
T ss_dssp EEECHHHH----------HTTTCSHHHHHHHHHHHHHHHHHS-----------TTTEEEEEETGGGGTT------CCCCH
T ss_pred EEeeHHHH----------hccCCccccHHHHHHHHHHHHhhc-----------CCCeEEEEeCHHHHhccCcccchHHHH
Confidence 76653221 111111 11223445555544322 3477999999998753210 01123
Q ss_pred HHHHHHHhcCCCcEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHH
Q 009072 283 QCLLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTL 345 (544)
Q Consensus 283 ~~L~~~~~~~~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L 345 (544)
+.|..+++.....+|++++.. ..........++.+| +..+.|.+|+.+++.++|
T Consensus 141 ~~l~~~~~~~~~~~i~~~~~~-------~~~~~~~~~~~l~~r--~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 141 NMLKPALARGELHCVGATTLD-------EYRQYIEKDAALERR--FQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp HHHHHHHHTTSCCEEEEECHH-------HHHHHTTTCHHHHTT--EEEEECCCCCHHHHHTTC
T ss_pred HHHHHhhccCCeEEEEeCCHH-------HHHHHHhcCHHHHHH--hceeecCCCCHHHHHHHh
Confidence 456666666655444443320 000000112455554 668999999999887654
No 55
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.53 E-value=2e-16 Score=156.37 Aligned_cols=209 Identities=14% Similarity=0.182 Sum_probs=127.9
Q ss_pred cccCCCCcchhccChHHHHHHHHHHHHhhcCCC-----CCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCCch
Q 009072 141 EKYKPRSLEELAVQRKKVEEVRAWFEERLGDSK-----DKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPT 215 (544)
Q Consensus 141 eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~-----g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~~~ 215 (544)
.++++.++++++|++..++++.+++... ..+. +...++.+||+||||||||++|+++|++++.+++.++.++..
T Consensus 3 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~ 81 (268)
T 2r62_A 3 AEKPNVRFKDMAGNEEAKEEVVEIVDFL-KYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFI 81 (268)
T ss_dssp CCCCCCCSTTSSSCTTTHHHHHHHHHHH-HCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTT
T ss_pred ccCCCCCHHHhCCcHHHHHHHHHHHHHH-HChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHH
Confidence 4677889999999999999999877642 1111 222336799999999999999999999999998888766532
Q ss_pred hhhhhhhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHH----------HHHHHH
Q 009072 216 IWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFE----------RLRQCL 285 (544)
Q Consensus 216 ~~~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~----------~~~~~L 285 (544)
.. ..+... ..+...+..+... .+.||+|||+|.+....... +.+..|
T Consensus 82 ~~-------~~~~~~----~~~~~~~~~a~~~------------~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~l 138 (268)
T 2r62_A 82 EM-------FVGLGA----SRVRDLFETAKKQ------------APSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQL 138 (268)
T ss_dssp TS-------CSSSCS----SSSSTTHHHHHHS------------CSCEEEESCGGGTTC----------CCCSCSSTTTT
T ss_pred Hh-------hcchHH----HHHHHHHHHHHhc------------CCeEEEEeChhhhcccccccccCCCchhHHHHHHHH
Confidence 10 111111 1122334444322 36799999999885432100 111223
Q ss_pred HHHHhc---CCCcEEEEEccCCCCCCCCccccchHHHHHHHh--hcCceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHH
Q 009072 286 LLLVRS---THIPTAVVLTECGKADSVDSTAQSFEELQSILV--DAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQ 360 (544)
Q Consensus 286 ~~~~~~---~~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~--r~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~ 360 (544)
+..++. ...++++|+++..... .+ .++++ |+ ...+.|.+|+.++...+|+..+....+. ++..
T Consensus 139 l~~l~~~~~~~~~v~vi~ttn~~~~-ld---------~~l~r~~Rf-~~~i~i~~p~~~~r~~il~~~~~~~~~~-~~~~ 206 (268)
T 2r62_A 139 LAEMDGFGSENAPVIVLAATNRPEI-LD---------PALMRPGRF-DRQVLVDKPDFNGRVEILKVHIKGVKLA-NDVN 206 (268)
T ss_dssp TTTTTCSSCSCSCCEEEECBSCCTT-SC---------GGGGSSSSS-CCCCBCCCCCTTTHHHHHHHHTSSSCCC-SSCC
T ss_pred HHHhhCcccCCCCEEEEEecCCchh-cC---------HhHcCCCCC-CeEEEecCcCHHHHHHHHHHHHhcCCCC-CccC
Confidence 332322 1234566666533211 11 12333 22 4578999999999999998877543322 2233
Q ss_pred HHHHHHHcCC----cHHHHHHHHHHhccC
Q 009072 361 IDLVAQASGG----DIRQAITSLQFSSLK 385 (544)
Q Consensus 361 l~~Ia~~s~G----DiR~aIn~Lq~~~~~ 385 (544)
++.|+..+.| ||+.+++.....+..
T Consensus 207 ~~~la~~~~g~~g~dl~~l~~~a~~~a~~ 235 (268)
T 2r62_A 207 LQEVAKLTAGLAGADLANIINEAALLAGR 235 (268)
T ss_dssp TTTTTSSSCSSCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 5667776665 888888888777653
No 56
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.52 E-value=2e-13 Score=136.83 Aligned_cols=168 Identities=14% Similarity=0.141 Sum_probs=97.9
Q ss_pred CCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCCchhhhhhhhccccCcccccchHHHHHHHHHHHhhcCCCCC
Q 009072 174 DKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPS 253 (544)
Q Consensus 174 g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~~~~~~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~ 253 (544)
+..+++.+||+||||||||++|+++|++++.+++.++.++.. ..........+...+..+.....
T Consensus 32 ~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~-----------~~~~g~~~~~i~~~f~~a~~~~~---- 96 (293)
T 3t15_A 32 NIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELE-----------SGNAGEPAKLIRQRYREAAEIIR---- 96 (293)
T ss_dssp TCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHH-----------CC---HHHHHHHHHHHHHHHHHT----
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhh-----------hccCchhHHHHHHHHHHHHHHHh----
Confidence 333448999999999999999999999999999999865421 00111223445566666532211
Q ss_pred CCCCCCCceEEEEecCCCCCchhH--------HHHHHHHHHHHHhc-------------CCCcEEEEEccCCCCCCCCcc
Q 009072 254 IPGESKSSAILLIDDLPVTNGRTA--------FERLRQCLLLLVRS-------------THIPTAVVLTECGKADSVDST 312 (544)
Q Consensus 254 ~~~~~~~~~vIlIDEid~l~~~~~--------~~~~~~~L~~~~~~-------------~~~piIiI~t~~~~~~~~d~~ 312 (544)
...++||+|||+|.+..+.. -..+.+.|+++++. ...++++|++++...
T Consensus 97 ----~~~~~vl~iDEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~------ 166 (293)
T 3t15_A 97 ----KGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFS------ 166 (293)
T ss_dssp ----TSSCCCEEEECCC--------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCC------
T ss_pred ----cCCCeEEEEechhhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcc------
Confidence 13578999999998754211 11345667777641 112345555543211
Q ss_pred ccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHc-CCcHH
Q 009072 313 AQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQAS-GGDIR 373 (544)
Q Consensus 313 ~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~l~~Ia~~s-~GDiR 373 (544)
.+ ..+++++.|...+-+ .|+.++...+++.++...+ ++.+.+..++... +.||.
T Consensus 167 --~l--d~al~R~~R~d~~i~-~P~~~~r~~Il~~~~~~~~--~~~~~l~~~~~~~~~~~l~ 221 (293)
T 3t15_A 167 --TL--YAPLIRDGRMEKFYW-APTREDRIGVCTGIFRTDN--VPAEDVVKIVDNFPGQSID 221 (293)
T ss_dssp --C----CHHHHHHHEEEEEE-CCCHHHHHHHHHHHHGGGC--CCHHHHHHHHHHSCSCCHH
T ss_pred --cC--CHHHhCCCCCceeEe-CcCHHHHHHHHHHhccCCC--CCHHHHHHHhCCCCcccHH
Confidence 11 123343223444334 4699999999998876654 5677777777664 44554
No 57
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.51 E-value=1.9e-13 Score=139.32 Aligned_cols=206 Identities=11% Similarity=0.110 Sum_probs=133.3
Q ss_pred CcccccCCCCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCCchhh
Q 009072 138 LWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIW 217 (544)
Q Consensus 138 lW~eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~~~~~ 217 (544)
.|+++|+|..+.+++|++..++.+...+.. + +++||+||||||||++|+++|+.++.+++.++.......
T Consensus 16 ~~~~~~~~~~~~~i~g~~~~~~~l~~~l~~------~----~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~ 85 (331)
T 2r44_A 16 NKIKEVIDEVGKVVVGQKYMINRLLIGICT------G----GHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLP 85 (331)
T ss_dssp HHHHHHHHHHTTTCCSCHHHHHHHHHHHHH------T----CCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCH
T ss_pred HHHHHHHHHhccceeCcHHHHHHHHHHHHc------C----CeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCCh
Confidence 489999999999999999999988887765 2 579999999999999999999999999888875321111
Q ss_pred hhhhhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHHHHHhcC-----
Q 009072 218 QEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRST----- 292 (544)
Q Consensus 218 ~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~~~~~~----- 292 (544)
.+........... ..+.. . .+.-...|++|||++.+... .++.|.+.++..
T Consensus 86 ~~l~g~~~~~~~~--------------~~~~~-~----~g~l~~~vl~iDEi~~~~~~-----~~~~Ll~~l~~~~~~~~ 141 (331)
T 2r44_A 86 SDLIGTMIYNQHK--------------GNFEV-K----KGPVFSNFILADEVNRSPAK-----VQSALLECMQEKQVTIG 141 (331)
T ss_dssp HHHHEEEEEETTT--------------TEEEE-E----ECTTCSSEEEEETGGGSCHH-----HHHHHHHHHHHSEEEET
T ss_pred hhcCCceeecCCC--------------CceEe-c----cCcccccEEEEEccccCCHH-----HHHHHHHHHhcCceeeC
Confidence 1111100000000 00000 0 00001359999999997643 334455555542
Q ss_pred ------CCcEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHH---------------
Q 009072 293 ------HIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQ--------------- 351 (544)
Q Consensus 293 ------~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~--------------- 351 (544)
+.+.++|++++.. .... ......++++|+ ...+.+.+|+.++..++|+..+..
T Consensus 142 g~~~~~~~~~~viat~np~-~~~~----~~~l~~~l~~Rf-~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i 215 (331)
T 2r44_A 142 DTTYPLDNPFLVLATQNPV-EQEG----TYPLPEAQVDRF-MMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDV 215 (331)
T ss_dssp TEEEECCSSCEEEEEECTT-CCSC----CCCCCHHHHTTS-SEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHH
T ss_pred CEEEECCCCEEEEEecCCC-cccC----cccCCHHHHhhe-eEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHH
Confidence 2345555554321 1101 101125667764 346999999999999999887654
Q ss_pred -------hCCCCCHHHHHHHHHHc-----CC---------------cHHHHHHHHHHhc
Q 009072 352 -------EQYSLSTEQIDLVAQAS-----GG---------------DIRQAITSLQFSS 383 (544)
Q Consensus 352 -------e~~~i~~~~l~~Ia~~s-----~G---------------DiR~aIn~Lq~~~ 383 (544)
.++.+++++++.|+..+ .| +.|.+++.++.+.
T Consensus 216 ~~~~~~~~~v~~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~ 274 (331)
T 2r44_A 216 LEIRNEINKVTISESLEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAK 274 (331)
T ss_dssp HHHHHHHHTCBCCHHHHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHH
T ss_pred HHHHHHhccCCCCHHHHHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHH
Confidence 26778999999988754 23 5899988887654
No 58
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.50 E-value=1.3e-13 Score=147.23 Aligned_cols=214 Identities=15% Similarity=0.215 Sum_probs=130.2
Q ss_pred CCCcccccCCCCcchhccChHHHHHHHHHHHHhhcC----CCCCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeC
Q 009072 136 QQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGD----SKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDT 211 (544)
Q Consensus 136 ~~lW~eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~----~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~ 211 (544)
..+|.+. ++.+|+|++|.++.+.++++.+...... .-+...++.++|+||||||||++|+++|.+++..++.++.
T Consensus 19 ~~~~~~~-~~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g 97 (499)
T 2dhr_A 19 ARVLTEA-PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASG 97 (499)
T ss_dssp CEEECSC-CCCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEG
T ss_pred ceeeccC-CCCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEeh
Confidence 3456666 7889999999999999998877653211 0122223679999999999999999999999999999987
Q ss_pred CCchhhhhhhhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCc---------hhHHHHHH
Q 009072 212 PTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNG---------RTAFERLR 282 (544)
Q Consensus 212 s~~~~~~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~---------~~~~~~~~ 282 (544)
++.. ..........+..+++.+. ...|++++|||+|.+.. ........
T Consensus 98 ~~~~-----------~~~~g~~~~~v~~lfq~a~------------~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l 154 (499)
T 2dhr_A 98 SDFV-----------EMFVGVGAARVRDLFETAK------------RHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTL 154 (499)
T ss_dssp GGGT-----------SSCTTHHHHHHHHHTTTSS------------SSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHH
T ss_pred hHHH-----------HhhhhhHHHHHHHHHHHHH------------hcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHH
Confidence 6421 0001111122333332211 12478999999987642 11122333
Q ss_pred HHHHHHHhcC--CCcEEEEEccCCCCCCCCccccchHHHHHHHhhcC-ceeEEecCCCHHHHHHHHHHHHHHhCCCCCHH
Q 009072 283 QCLLLLVRST--HIPTAVVLTECGKADSVDSTAQSFEELQSILVDAG-ARKVALNPITNGSIKRTLSKICRQEQYSLSTE 359 (544)
Q Consensus 283 ~~L~~~~~~~--~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~-~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~ 359 (544)
+.|+..+... +..+++++++..+ ...| ++++++.+ ...|.+.+|+..+...+|+..+. +..++++
T Consensus 155 ~~LL~~Ldg~~~~~~viviAatn~p-~~LD---------~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~--~~~l~~d 222 (499)
T 2dhr_A 155 NQLLVEMDGFEKDTAIVVMAATNRP-DILD---------PALLRPGRFDRQIAIDAPDVKGREQILRIHAR--GKPLAED 222 (499)
T ss_dssp HHHHHHGGGCCSSCCCEEEECCSCG-GGSC---------TTTSSTTSSCCEEECCCCCHHHHHHHHHHTTS--SSCCCCS
T ss_pred HHHHHHhcccccCccEEEEEecCCh-hhcC---------cccccccccceEEecCCCCHHHHHHHHHHHHh--cCCCChH
Confidence 3344434432 2345555554322 1111 23333211 45899999999999998876543 3445443
Q ss_pred -HHHHHHHHcCC----cHHHHHHHHHHhccC
Q 009072 360 -QIDLVAQASGG----DIRQAITSLQFSSLK 385 (544)
Q Consensus 360 -~l~~Ia~~s~G----DiR~aIn~Lq~~~~~ 385 (544)
.+..|+..+.| ||+.+++..-..+..
T Consensus 223 v~l~~lA~~t~G~~gadL~~lv~~Aa~~A~~ 253 (499)
T 2dhr_A 223 VDLALLAKRTPGFVGADLENLLNEAALLAAR 253 (499)
T ss_dssp STTHHHHTTSCSCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 47888988877 566677766555543
No 59
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.49 E-value=2.5e-13 Score=134.73 Aligned_cols=207 Identities=13% Similarity=0.174 Sum_probs=119.8
Q ss_pred cCCCCcchhccChHHHHHHHHHHHHhhcCCC-----CCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCCchhh
Q 009072 143 YKPRSLEELAVQRKKVEEVRAWFEERLGDSK-----DKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIW 217 (544)
Q Consensus 143 y~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~-----g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~~~~~ 217 (544)
++..+|+|++|.++.+++|++.+......+. +...++.++|+|||||||||+++++|.+++..++.++.++..
T Consensus 4 ~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~-- 81 (274)
T 2x8a_A 4 VPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELL-- 81 (274)
T ss_dssp --------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTC--
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHH--
Confidence 4567899999999999999887644332211 333336799999999999999999999999999999876521
Q ss_pred hhhhhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchh------HHHHHHHHHHHHHhc
Q 009072 218 QEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRT------AFERLRQCLLLLVRS 291 (544)
Q Consensus 218 ~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~------~~~~~~~~L~~~~~~ 291 (544)
..........+..+++.+... .|.++++||+|.+.... ...++.+.+...+..
T Consensus 82 ---------~~~~~~~~~~i~~vf~~a~~~------------~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsg 140 (274)
T 2x8a_A 82 ---------NMYVGESERAVRQVFQRAKNS------------APCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDG 140 (274)
T ss_dssp ---------SSTTHHHHHHHHHHHHHHHHT------------CSEEEEEETCTTTCC---------CTTHHHHHHHHHHT
T ss_pred ---------hhhhhHHHHHHHHHHHHHHhc------------CCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhc
Confidence 111111224456666655332 37899999999864321 011222333333332
Q ss_pred C--CCcEEEEEccCCCCCCCCccccchHHHHHHHh--hcCceeEEecCCCHHHHHHHHHHHHHHhC-CCC-CHHHHHHHH
Q 009072 292 T--HIPTAVVLTECGKADSVDSTAQSFEELQSILV--DAGARKVALNPITNGSIKRTLSKICRQEQ-YSL-STEQIDLVA 365 (544)
Q Consensus 292 ~--~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~--r~~~~~I~f~p~s~~~i~~~L~~i~~~e~-~~i-~~~~l~~Ia 365 (544)
. +..+++++++..+ . .+ .+++++ |+ ...|.+..|+.++...+|+.++.... ..+ .+..++.|+
T Consensus 141 g~~~~~~i~ia~tn~p-~-------~L--D~al~r~gRf-d~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la 209 (274)
T 2x8a_A 141 LEARQQVFIMAATNRP-D-------II--DPAILRPGRL-DKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIA 209 (274)
T ss_dssp CCSTTCEEEEEEESCG-G-------GS--CHHHHSTTSS-CEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHH
T ss_pred ccccCCEEEEeecCCh-h-------hC--CHhhcCcccC-CeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHH
Confidence 2 2234444443211 1 11 134444 33 56789999999999999988764421 222 233466666
Q ss_pred HH------cCCcHHHHHHHHHHhc
Q 009072 366 QA------SGGDIRQAITSLQFSS 383 (544)
Q Consensus 366 ~~------s~GDiR~aIn~Lq~~~ 383 (544)
.. ++.||...++..-+.+
T Consensus 210 ~~~~~~g~sgadl~~l~~~a~~~a 233 (274)
T 2x8a_A 210 GDLRCDCYTGADLSALVREASICA 233 (274)
T ss_dssp TCSGGGSCCHHHHHHHHHHHHHHH
T ss_pred HhhccCCcCHHHHHHHHHHHHHHH
Confidence 53 4458887766554444
No 60
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.49 E-value=6.4e-13 Score=133.79 Aligned_cols=214 Identities=14% Similarity=0.129 Sum_probs=129.0
Q ss_pred chhccChHHHHHHHHHHHHhhcCCC-CCCCccEEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeCCCchh---hhhhh
Q 009072 149 EELAVQRKKVEEVRAWFEERLGDSK-DKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTPTPTI---WQEYM 221 (544)
Q Consensus 149 ~dLv~~~~~~~~l~~wL~~~~~~~~-g~~~~~~lLL~GPpG~GKTtla~~lA~el---g~~viei~~s~~~~---~~e~l 221 (544)
.+++|++..++.+...+........ ...+...++|+||||||||++|+++|+.+ +.+++.++.+.... ....+
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 96 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLI 96 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHHHHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccHHHhc
Confidence 3578999999999999987643111 11122589999999999999999999998 45688777654221 11111
Q ss_pred hccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHHHHHhcCC--------
Q 009072 222 HNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTH-------- 293 (544)
Q Consensus 222 ~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~~~~~~~-------- 293 (544)
+......++.. ...+...+. . ....||+|||++.+.. .+++.|+++++...
T Consensus 97 g~~~~~~~~~~-~~~~~~~~~----~-----------~~~~vl~lDEi~~l~~-----~~~~~Ll~~le~~~~~~~~~~~ 155 (311)
T 4fcw_A 97 GAPPGYVGYEE-GGQLTEAVR----R-----------RPYSVILFDAIEKAHP-----DVFNILLQMLDDGRLTDSHGRT 155 (311)
T ss_dssp CCCTTSTTTTT-CCHHHHHHH----H-----------CSSEEEEEETGGGSCH-----HHHHHHHHHHHHSEEECTTSCE
T ss_pred CCCCccccccc-cchHHHHHH----h-----------CCCeEEEEeChhhcCH-----HHHHHHHHHHhcCEEEcCCCCE
Confidence 11111111110 011222221 1 1246999999999864 23455666665432
Q ss_pred ---CcEEEEEccCCCC-----------CCCCccccc----h-HHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHHh--
Q 009072 294 ---IPTAVVLTECGKA-----------DSVDSTAQS----F-EELQSILVDAGARKVALNPITNGSIKRTLSKICRQE-- 352 (544)
Q Consensus 294 ---~piIiI~t~~~~~-----------~~~d~~~~~----l-~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e-- 352 (544)
...++|++++... ...+..... . ...+++++|+ ...+.|.|++.+++..++...+...
T Consensus 156 ~~~~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~-~~~~~~~p~~~~~~~~i~~~~l~~~~~ 234 (311)
T 4fcw_A 156 VDFRNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRL-DEIVVFRPLTKEQIRQIVEIQMSYLRA 234 (311)
T ss_dssp EECTTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTC-SEEEECCCCCHHHHHHHHHHHTHHHHH
T ss_pred EECCCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHhcC-CeEEEeCCCCHHHHHHHHHHHHHHHHH
Confidence 1334444432200 000000000 0 0113455663 4789999999999999999877652
Q ss_pred -------CCCCCHHHHHHHHHHcC---CcHHHHHHHHHHhcc
Q 009072 353 -------QYSLSTEQIDLVAQASG---GDIRQAITSLQFSSL 384 (544)
Q Consensus 353 -------~~~i~~~~l~~Ia~~s~---GDiR~aIn~Lq~~~~ 384 (544)
.+.+++++++.|+..+- |++|...+.++.++.
T Consensus 235 ~~~~~~~~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~ 276 (311)
T 4fcw_A 235 RLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELE 276 (311)
T ss_dssp HHHTTTCEEEECHHHHHHHHHHSCBTTTBTTTHHHHHHHHTH
T ss_pred HHHhCCcEEEeCHHHHHHHHHhCCCccCCchhHHHHHHHHHH
Confidence 34689999999999764 999988888887765
No 61
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.48 E-value=2.5e-13 Score=133.00 Aligned_cols=210 Identities=16% Similarity=0.215 Sum_probs=125.7
Q ss_pred ccccCCCCcchhccChHHHHHHHHHHHHhhcC----CCCCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCCch
Q 009072 140 AEKYKPRSLEELAVQRKKVEEVRAWFEERLGD----SKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPT 215 (544)
Q Consensus 140 ~eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~----~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~~~ 215 (544)
+..+++.+|++++|.+..+.+++......... .-+...++.++|+|||||||||+++++|.+++..++.++..+..
T Consensus 7 ~~~~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~ 86 (254)
T 1ixz_A 7 LTEAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFV 86 (254)
T ss_dssp -CCCCSCCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred ccCCCCCCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHH
Confidence 55677889999999999988888766543110 00112225699999999999999999999999888887653311
Q ss_pred hhhhhhhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCch---------hHHHHHHHHHH
Q 009072 216 IWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGR---------TAFERLRQCLL 286 (544)
Q Consensus 216 ~~~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~---------~~~~~~~~~L~ 286 (544)
....+ .....+..+++.+.. ..+.++++||+|.+... ....+..+.+.
T Consensus 87 -------~~~~~----~~~~~i~~~~~~~~~------------~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll 143 (254)
T 1ixz_A 87 -------EMFVG----VGAARVRDLFETAKR------------HAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLL 143 (254)
T ss_dssp -------HSCTT----HHHHHHHHHHHHHTT------------SSSEEEEEETHHHHHC---------CHHHHHHHHHHH
T ss_pred -------HHHhh----HHHHHHHHHHHHHHh------------cCCeEEEehhhhhhhcccCccccccchHHHHHHHHHH
Confidence 00011 112344555555431 23689999999865221 11122333333
Q ss_pred HHHhcC--CCcEEEEEccCCCCCCCCccccchHHHHHHHhhc-CceeEEecCCCHHHHHHHHHHHHHHhCCCCCHH-HHH
Q 009072 287 LLVRST--HIPTAVVLTECGKADSVDSTAQSFEELQSILVDA-GARKVALNPITNGSIKRTLSKICRQEQYSLSTE-QID 362 (544)
Q Consensus 287 ~~~~~~--~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~-~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~-~l~ 362 (544)
..+... +..+++++++..+ .. ++ .+++++. ....|.|.+|+.++..++|+..+. +..++++ .+.
T Consensus 144 ~~l~g~~~~~~~i~~a~t~~p-~~-------ld--~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~--~~~~~~~~~~~ 211 (254)
T 1ixz_A 144 VEMDGFEKDTAIVVMAATNRP-DI-------LD--PALLRPGRFDRQIAIDAPDVKGREQILRIHAR--GKPLAEDVDLA 211 (254)
T ss_dssp HHHHTCCTTCCEEEEEEESCG-GG-------SC--GGGGSTTSSCEEEECCSCCHHHHHHHHHHHHT--TSCBCTTCCHH
T ss_pred HHHhCCCCCCCEEEEEccCCc-hh-------CC--HHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHc--CCCCCcccCHH
Confidence 333332 2345555544321 11 11 2333321 245799999999999999887653 3444443 378
Q ss_pred HHHHHcCC----cHHHHHHHHHHhcc
Q 009072 363 LVAQASGG----DIRQAITSLQFSSL 384 (544)
Q Consensus 363 ~Ia~~s~G----DiR~aIn~Lq~~~~ 384 (544)
.|+..+.| ||+.+++..-..+.
T Consensus 212 ~la~~~~G~~~~dl~~~~~~a~~~a~ 237 (254)
T 1ixz_A 212 LLAKRTPGFVGADLENLLNEAALLAA 237 (254)
T ss_dssp HHHHTCTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 89998887 56666665555443
No 62
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.48 E-value=1.4e-13 Score=155.76 Aligned_cols=211 Identities=16% Similarity=0.228 Sum_probs=137.2
Q ss_pred CCCCCCcccccCCCCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHh----------
Q 009072 133 SSTQQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL---------- 202 (544)
Q Consensus 133 ~~~~~lW~eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~el---------- 202 (544)
......|+++|+|.++++++|++..++++..++... ..+++||+||||||||++|+.+|+.+
T Consensus 170 ~~~~~~l~~~~~~~~~d~~iGr~~~i~~l~~~l~~~--------~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~ 241 (758)
T 1r6b_X 170 ENFTTNLNQLARVGGIDPLIGREKELERAIQVLCRR--------RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMA 241 (758)
T ss_dssp CSSSCBHHHHHHTTCSCCCCSCHHHHHHHHHHHTSS--------SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGT
T ss_pred HHHhHhHHHHHhcCCCCCccCCHHHHHHHHHHHhcc--------CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhc
Confidence 345667999999999999999999999988877532 22689999999999999999999987
Q ss_pred CCeEEEEeCCCchhhhhhhhccccCccc-ccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchh----H
Q 009072 203 GARLYEWDTPTPTIWQEYMHNCKTGLEY-TSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRT----A 277 (544)
Q Consensus 203 g~~viei~~s~~~~~~e~l~~~~~g~~~-~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~----~ 277 (544)
+..++.++.... ..+..+ ......++.++..+.. ..+.||||||++.+.+.. .
T Consensus 242 ~~~~~~~~~~~l----------~~~~~~~g~~e~~l~~~~~~~~~------------~~~~iL~IDEi~~l~~~~~~~~~ 299 (758)
T 1r6b_X 242 DCTIYSLDIGSL----------LAGTKYRGDFEKRFKALLKQLEQ------------DTNSILFIDEIHTIIGAGAASGG 299 (758)
T ss_dssp TCEEEECCCC-------------CCCCCSSCHHHHHHHHHHHHSS------------SSCEEEEETTTTTTTTSCCSSSC
T ss_pred CCEEEEEcHHHH----------hccccccchHHHHHHHHHHHHHh------------cCCeEEEEechHHHhhcCCCCcc
Confidence 555555543321 111112 1223455566655532 236899999999883211 0
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHH----hC
Q 009072 278 FERLRQCLLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQ----EQ 353 (544)
Q Consensus 278 ~~~~~~~L~~~~~~~~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~----e~ 353 (544)
...+.+.|..+++.... .+|++++. +.+...+....++.+| +..+.|.+|+.++...+|..++.. .+
T Consensus 300 ~~~~~~~L~~~l~~~~~--~~I~at~~-----~~~~~~~~~d~aL~~R--f~~i~v~~p~~~e~~~il~~l~~~~~~~~~ 370 (758)
T 1r6b_X 300 QVDAANLIKPLLSSGKI--RVIGSTTY-----QEFSNIFEKDRALARR--FQKIDITEPSIEETVQIINGLKPKYEAHHD 370 (758)
T ss_dssp HHHHHHHHSSCSSSCCC--EEEEEECH-----HHHHCCCCCTTSSGGG--EEEEECCCCCHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHhCCCe--EEEEEeCc-----hHHhhhhhcCHHHHhC--ceEEEcCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 12334556566665543 33333311 0000111111234444 678999999999999999988765 57
Q ss_pred CCCCHHHHHHHHHHcCCcH------HHHHHHHHHh
Q 009072 354 YSLSTEQIDLVAQASGGDI------RQAITSLQFS 382 (544)
Q Consensus 354 ~~i~~~~l~~Ia~~s~GDi------R~aIn~Lq~~ 382 (544)
+.++++++..++..+.|.+ ..++..+..+
T Consensus 371 v~~~~~al~~~~~~s~~~i~~~~lp~~~i~lld~a 405 (758)
T 1r6b_X 371 VRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEA 405 (758)
T ss_dssp CCCCHHHHHHHHHHHHHHCTTSCTTHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhhhhcccccCchHHHHHHHHH
Confidence 8899999999998876632 3556555443
No 63
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.47 E-value=3.1e-14 Score=131.52 Aligned_cols=163 Identities=13% Similarity=0.205 Sum_probs=100.6
Q ss_pred CCCcccccCCCCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHh----------CCe
Q 009072 136 QQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL----------GAR 205 (544)
Q Consensus 136 ~~lW~eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~el----------g~~ 205 (544)
...|.++|+|.++++++|++..++.+..++.. +. .+.++|+||||||||++|+.+++++ +..
T Consensus 9 ~~~l~~~~~~~~~~~~~g~~~~~~~l~~~l~~------~~--~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~ 80 (187)
T 2p65_A 9 SRDLTALARAGKLDPVIGRDTEIRRAIQILSR------RT--KNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRK 80 (187)
T ss_dssp EEEHHHHHHTTCSCCCCSCHHHHHHHHHHHTS------SS--SCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCE
T ss_pred HHHHHHHHhccccchhhcchHHHHHHHHHHhC------CC--CCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCe
Confidence 45689999999999999999999998888743 21 2689999999999999999999997 666
Q ss_pred EEEEeCCCchhhhhhhhccccCccc-ccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCC-----chhHHH
Q 009072 206 LYEWDTPTPTIWQEYMHNCKTGLEY-TSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTN-----GRTAFE 279 (544)
Q Consensus 206 viei~~s~~~~~~e~l~~~~~g~~~-~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~-----~~~~~~ 279 (544)
++.++.... ..+..+ ......+..++..+... ..+.||+|||++.+. ... ..
T Consensus 81 ~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~vl~iDe~~~l~~~~~~~~~-~~ 138 (187)
T 2p65_A 81 LVSLDLSSL----------IAGAKYRGDFEERLKSILKEVQDA-----------EGQVVMFIDEIHTVVGAGAVAEG-AL 138 (187)
T ss_dssp EEEECHHHH----------HHHCCSHHHHHHHHHHHHHHHHHT-----------TTSEEEEETTGGGGSSSSSSCTT-SC
T ss_pred EEEEeHHHh----------hcCCCchhHHHHHHHHHHHHHHhc-----------CCceEEEEeCHHHhccccccccc-ch
Confidence 666643211 000101 11123345555555432 346799999999875 211 11
Q ss_pred HHHHHHHHHHhcCCCcEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCC
Q 009072 280 RLRQCLLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPIT 337 (544)
Q Consensus 280 ~~~~~L~~~~~~~~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s 337 (544)
.+.+.|..+++.....+|+..+. ...........++.+| +..|.+.+|+
T Consensus 139 ~~~~~l~~~~~~~~~~ii~~~~~-------~~~~~~~~~~~~l~~R--~~~i~i~~p~ 187 (187)
T 2p65_A 139 DAGNILKPMLARGELRCIGATTV-------SEYRQFIEKDKALERR--FQQILVEQPS 187 (187)
T ss_dssp CTHHHHHHHHHTTCSCEEEEECH-------HHHHHHTTTCHHHHHH--EEEEECCSCC
T ss_pred HHHHHHHHHHhcCCeeEEEecCH-------HHHHHHHhccHHHHHh--cCcccCCCCC
Confidence 23345666666655433333321 0000001112455555 6678888875
No 64
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.45 E-value=5.9e-13 Score=144.59 Aligned_cols=215 Identities=13% Similarity=0.076 Sum_probs=124.7
Q ss_pred cccccCCCCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCCchhhh
Q 009072 139 WAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIWQ 218 (544)
Q Consensus 139 W~eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~~~~~~ 218 (544)
+..+....-..+++|.++....+..++....... ..+..+++|+|||||||||+|+++|..++.++..++........
T Consensus 71 ~~~~~~~~l~~di~G~~~vk~~i~~~~~l~~~~~--~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~ 148 (543)
T 3m6a_A 71 DLKEAGRLLDEEHHGLEKVKERILEYLAVQKLTK--SLKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDES 148 (543)
T ss_dssp CTTTGGGTHHHHCSSCHHHHHHHHHHHHHHHHSS--SCCSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC-----
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcc--cCCCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhh
Confidence 3444444445678999999888887765433221 22447899999999999999999999999999998876532211
Q ss_pred hhhhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHHHHHhcCC-----
Q 009072 219 EYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTH----- 293 (544)
Q Consensus 219 e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~~~~~~~----- 293 (544)
+.........+. ....+...+..+. ....|+||||+|.+..... ...++.|++.++...
T Consensus 149 ~~~g~~~~~ig~--~~~~~~~~~~~a~-------------~~~~vl~lDEid~l~~~~~-~~~~~~LL~~ld~~~~~~~~ 212 (543)
T 3m6a_A 149 EIRGHRRTYVGA--MPGRIIQGMKKAG-------------KLNPVFLLDEIDKMSSDFR-GDPSSAMLEVLDPEQNSSFS 212 (543)
T ss_dssp -----------------CHHHHHHTTC-------------SSSEEEEEEESSSCC----------CCGGGTCTTTTTBCC
T ss_pred hhhhHHHHHhcc--CchHHHHHHHHhh-------------ccCCEEEEhhhhhhhhhhc-cCHHHHHHHHHhhhhcceee
Confidence 110000000000 0111222222111 1233999999999865321 123345666654321
Q ss_pred ----------CcEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHH-----h-----C
Q 009072 294 ----------IPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQ-----E-----Q 353 (544)
Q Consensus 294 ----------~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~-----e-----~ 353 (544)
..+++|++++... .+ .+++++| +.+|.|++|+.++...++...+.. . +
T Consensus 213 ~~~~~~~~~~~~v~iI~ttN~~~--------~l--~~aL~~R--~~vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~ 280 (543)
T 3m6a_A 213 DHYIEETFDLSKVLFIATANNLA--------TI--PGPLRDR--MEIINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSN 280 (543)
T ss_dssp CSSSCCCCBCSSCEEEEECSSTT--------TS--CHHHHHH--EEEEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGG
T ss_pred cccCCeeecccceEEEeccCccc--------cC--CHHHHhh--cceeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCccc
Confidence 2345555542211 11 1456665 678999999999999998886632 2 4
Q ss_pred CCCCHHHHHHHHHHcC--CcHHHHHHHHHHhc
Q 009072 354 YSLSTEQIDLVAQASG--GDIRQAITSLQFSS 383 (544)
Q Consensus 354 ~~i~~~~l~~Ia~~s~--GDiR~aIn~Lq~~~ 383 (544)
+.++++++..|+.... |++|..-+.++.++
T Consensus 281 i~i~~~~l~~l~~~~~~~~~vR~L~~~i~~~~ 312 (543)
T 3m6a_A 281 LQLRDQAILDIIRYYTREAGVRSLERQLAAIC 312 (543)
T ss_dssp CEECHHHHHHHHHHHCCCSSSHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHhCChhhchhHHHHHHHHHH
Confidence 4678999999988655 67776666665544
No 65
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.44 E-value=1.9e-12 Score=135.42 Aligned_cols=218 Identities=15% Similarity=0.224 Sum_probs=129.8
Q ss_pred ccccCCCCcchhccChHHHHHHHHHH-HHhhcCCCCCCCccEEEE--EcCCCCcHHHHHHHHHHHh---------CCeEE
Q 009072 140 AEKYKPRSLEELAVQRKKVEEVRAWF-EERLGDSKDKFSTNVLVI--TGQAGVGKTATVRQIASHL---------GARLY 207 (544)
Q Consensus 140 ~eky~P~~~~dLv~~~~~~~~l~~wL-~~~~~~~~g~~~~~~lLL--~GPpG~GKTtla~~lA~el---------g~~vi 207 (544)
...|.| .+++|+++.+++|..++ ........ ..+ +.++| +||||+|||++++.+++++ ++.++
T Consensus 16 ~~~~~p---~~l~gR~~el~~l~~~l~~~~~~~~~-~~~-~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~ 90 (412)
T 1w5s_A 16 DENYIP---PELRVRRGEAEALARIYLNRLLSGAG-LSD-VNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQA 90 (412)
T ss_dssp STTCCC---SSCSSSCHHHHHHHHHHHHHHHTSSC-BCC-EEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCccCC---CCCCChHHHHHHHHHHHhHHHhcCCC-CCC-CEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEE
Confidence 345666 56799999999999999 77654200 222 68999 9999999999999999886 56677
Q ss_pred EEeCCCch----hhhhhhhccccCcc--cccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCch--hHHH
Q 009072 208 EWDTPTPT----IWQEYMHNCKTGLE--YTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGR--TAFE 279 (544)
Q Consensus 208 ei~~s~~~----~~~e~l~~~~~g~~--~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~--~~~~ 279 (544)
.+++.... .+...+........ ..+....+..+...+... +++.||+|||++.+... .. .
T Consensus 91 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~-----------~~~~llvlDe~~~l~~~~~~~-~ 158 (412)
T 1w5s_A 91 YVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVE-----------NHYLLVILDEFQSMLSSPRIA-A 158 (412)
T ss_dssp EEEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHH-----------TCEEEEEEESTHHHHSCTTSC-H
T ss_pred EEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhc-----------CCeEEEEEeCHHHHhhccCcc-h
Confidence 77753211 11111111100000 001111122222222211 34789999999987431 00 1
Q ss_pred HHHHHHHHHHhcC---C--CcEEEEEccCCCCCCCCccccchHHH----HHHHhhcCceeEEecCCCHHHHHHHHHHHHH
Q 009072 280 RLRQCLLLLVRST---H--IPTAVVLTECGKADSVDSTAQSFEEL----QSILVDAGARKVALNPITNGSIKRTLSKICR 350 (544)
Q Consensus 280 ~~~~~L~~~~~~~---~--~piIiI~t~~~~~~~~d~~~~~l~~l----~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~ 350 (544)
.....|..++... . .++.+|++.... .....+ ..+.+++ ...+.|.|++.+++..++...+.
T Consensus 159 ~~l~~l~~~~~~~~~~~~~~~v~lI~~~~~~--------~~~~~l~~~~~~~~~~~-~~~i~l~~l~~~e~~~ll~~~~~ 229 (412)
T 1w5s_A 159 EDLYTLLRVHEEIPSRDGVNRIGFLLVASDV--------RALSYMREKIPQVESQI-GFKLHLPAYKSRELYTILEQRAE 229 (412)
T ss_dssp HHHHHHHTHHHHSCCTTSCCBEEEEEEEEET--------HHHHHHHHHCHHHHTTC-SEEEECCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCceEEEEEEeccc--------cHHHHHhhhcchhhhhc-CCeeeeCCCCHHHHHHHHHHHHH
Confidence 1222233333221 2 455555443110 011112 2333444 33499999999999999998876
Q ss_pred HhC--CCCCHHHHHHHHHHcC------CcHHHHHHHHHHhc
Q 009072 351 QEQ--YSLSTEQIDLVAQASG------GDIRQAITSLQFSS 383 (544)
Q Consensus 351 ~e~--~~i~~~~l~~Ia~~s~------GDiR~aIn~Lq~~~ 383 (544)
..+ ..++++.+..|++.++ |++|.+++.++.+.
T Consensus 230 ~~~~~~~~~~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~ 270 (412)
T 1w5s_A 230 LGLRDTVWEPRHLELISDVYGEDKGGDGSARRAIVALKMAC 270 (412)
T ss_dssp HHBCTTSCCHHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHH
T ss_pred hcCCCCCCChHHHHHHHHHHHHhccCCCcHHHHHHHHHHHH
Confidence 543 2578999999999999 99999999887654
No 66
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.44 E-value=1.2e-13 Score=156.17 Aligned_cols=198 Identities=18% Similarity=0.208 Sum_probs=130.2
Q ss_pred CCCCCcccccCCCCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHh----------C
Q 009072 134 STQQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL----------G 203 (544)
Q Consensus 134 ~~~~lW~eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~el----------g 203 (544)
.....|+++|+|..+++++|+++.++++..++... ..+++||+||||||||++|+++|+.+ +
T Consensus 165 ~~~~~l~~~~~~~~ld~iiG~~~~i~~l~~~l~~~--------~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~ 236 (758)
T 3pxi_A 165 SLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRR--------TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRD 236 (758)
T ss_dssp SSCCBHHHHTTSSCSCCCCCCHHHHHHHHHHHHCS--------SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSS
T ss_pred HHHHHHHHHHhhCCCCCccCchHHHHHHHHHHhCC--------CCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcC
Confidence 45678999999999999999999999999888641 22679999999999999999999997 6
Q ss_pred CeEEEEeCCCchhhhhhhhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHH
Q 009072 204 ARLYEWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQ 283 (544)
Q Consensus 204 ~~viei~~s~~~~~~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~ 283 (544)
..++.++... ...| .....++.++..+.. ..+.||||| .. ....+
T Consensus 237 ~~~~~~~~g~----------~~~G----~~e~~l~~~~~~~~~------------~~~~iLfiD-----~~----~~~~~ 281 (758)
T 3pxi_A 237 KRVMTLDMGT----------KYRG----EFEDRLKKVMDEIRQ------------AGNIILFID-----AA----IDASN 281 (758)
T ss_dssp CCEECC------------------------CTTHHHHHHHHHT------------CCCCEEEEC-----C----------
T ss_pred CeEEEecccc----------cccc----hHHHHHHHHHHHHHh------------cCCEEEEEc-----Cc----hhHHH
Confidence 6776655410 0011 112345666666643 236799999 11 12334
Q ss_pred HHHHHHhcCCCcEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHH----hCCCCCHH
Q 009072 284 CLLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQ----EQYSLSTE 359 (544)
Q Consensus 284 ~L~~~~~~~~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~----e~~~i~~~ 359 (544)
.|+..++.+. +++|++++.. .+........++.+| +..|.|.+|+.+++..+|..++.. .++.++++
T Consensus 282 ~L~~~l~~~~--v~~I~at~~~-----~~~~~~~~d~al~rR--f~~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~ 352 (758)
T 3pxi_A 282 ILKPSLARGE--LQCIGATTLD-----EYRKYIEKDAALERR--FQPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDD 352 (758)
T ss_dssp --CCCTTSSS--CEEEEECCTT-----TTHHHHTTCSHHHHS--EEEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHH
T ss_pred HHHHHHhcCC--EEEEeCCChH-----HHHHHhhccHHHHhh--CcEEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHH
Confidence 5666666543 4455444321 111111112344444 688999999999999999987765 57789999
Q ss_pred HHHHHHHHcCCc------HHHHHHHHHHhc
Q 009072 360 QIDLVAQASGGD------IRQAITSLQFSS 383 (544)
Q Consensus 360 ~l~~Ia~~s~GD------iR~aIn~Lq~~~ 383 (544)
++..++..+++. .+.|+..+...+
T Consensus 353 al~~~~~~s~~~i~~~~~p~~ai~ll~~a~ 382 (758)
T 3pxi_A 353 AIEAAVKLSDRYISDRFLPDKAIDLIDEAG 382 (758)
T ss_dssp HHHHHHHHHHHSSCCSCTTHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccccCcCCcHHHHHHHHHH
Confidence 999999886544 356776665554
No 67
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.44 E-value=1.7e-12 Score=129.03 Aligned_cols=209 Identities=15% Similarity=0.199 Sum_probs=123.7
Q ss_pred ccccCCCCcchhccChHHHHHHHHHHHHhhcC----CCCCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCCch
Q 009072 140 AEKYKPRSLEELAVQRKKVEEVRAWFEERLGD----SKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPT 215 (544)
Q Consensus 140 ~eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~----~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~~~ 215 (544)
+...++.++++++|.+..+.+++......... .-+...++.++|+|||||||||+++++|..++..++.++..+..
T Consensus 31 ~~~~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~ 110 (278)
T 1iy2_A 31 LTEAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFV 110 (278)
T ss_dssp BCCCCCCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred ccCCCCCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHH
Confidence 33447789999999999988888766543110 00112225699999999999999999999999888887754311
Q ss_pred hhhhhhhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCch---------hHHHHHHHHHH
Q 009072 216 IWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGR---------TAFERLRQCLL 286 (544)
Q Consensus 216 ~~~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~---------~~~~~~~~~L~ 286 (544)
....+ .....+..+++.+... .+.++++||++.+... .......+.+.
T Consensus 111 -------~~~~~----~~~~~i~~~~~~~~~~------------~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll 167 (278)
T 1iy2_A 111 -------EMFVG----VGAARVRDLFETAKRH------------APCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLL 167 (278)
T ss_dssp -------HSTTT----HHHHHHHHHHHHHHTS------------CSEEEEEETHHHHHCC--------CHHHHHHHHHHH
T ss_pred -------HHHhh----HHHHHHHHHHHHHHhc------------CCcEEehhhhHhhhcccccccCCcchHHHHHHHHHH
Confidence 00011 1123445556554322 3679999999864211 11122222233
Q ss_pred HHHhcC--CCcEEEEEccCCCCCCCCccccchHHHHHHHhhc-CceeEEecCCCHHHHHHHHHHHHHHhCCCCCHH-HHH
Q 009072 287 LLVRST--HIPTAVVLTECGKADSVDSTAQSFEELQSILVDA-GARKVALNPITNGSIKRTLSKICRQEQYSLSTE-QID 362 (544)
Q Consensus 287 ~~~~~~--~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~-~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~-~l~ 362 (544)
..+... +..++++++...+ .. ++ ++++++. ....|.|.+|+.++..++|+..+. +..++++ .+.
T Consensus 168 ~~lsgg~~~~~~i~~a~t~~p-~~-------ld--~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~--~~~~~~~~~~~ 235 (278)
T 1iy2_A 168 VEMDGFEKDTAIVVMAATNRP-DI-------LD--PALLRPGRFDRQIAIDAPDVKGREQILRIHAR--GKPLAEDVDLA 235 (278)
T ss_dssp HHHTTCCTTCCEEEEEEESCT-TS-------SC--HHHHSTTSSCCEEECCCCCHHHHHHHHHHHHT--TSCBCTTCCHH
T ss_pred HHHhCCCCCCCEEEEEecCCc-hh-------CC--HhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHc--cCCCCcccCHH
Confidence 333322 2334555444322 11 11 3444421 245799999999999999987653 3444443 378
Q ss_pred HHHHHcCCc----HHHHHHHHHHhc
Q 009072 363 LVAQASGGD----IRQAITSLQFSS 383 (544)
Q Consensus 363 ~Ia~~s~GD----iR~aIn~Lq~~~ 383 (544)
.|+..+.|. |+.+++..-..+
T Consensus 236 ~la~~~~G~~~~dl~~l~~~a~~~a 260 (278)
T 1iy2_A 236 LLAKRTPGFVGADLENLLNEAALLA 260 (278)
T ss_dssp HHHHTCTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 899998885 455555444433
No 68
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.44 E-value=2.9e-12 Score=126.24 Aligned_cols=207 Identities=15% Similarity=0.188 Sum_probs=116.8
Q ss_pred CcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhC---CeEEEEeCCCchhh--hhhh
Q 009072 147 SLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLG---ARLYEWDTPTPTIW--QEYM 221 (544)
Q Consensus 147 ~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg---~~viei~~s~~~~~--~e~l 221 (544)
+|++++|+...++++...+...... ...+||+||||||||++|+++++.+. .+++.++++..... ...+
T Consensus 4 ~f~~~ig~~~~~~~~~~~~~~~~~~------~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~~~~~l 77 (265)
T 2bjv_A 4 YKDNLLGEANSFLEVLEQVSHLAPL------DKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSEL 77 (265)
T ss_dssp ------CCCHHHHHHHHHHHHHTTS------CSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHHHHHHH
T ss_pred ccccceeCCHHHHHHHHHHHHHhCC------CCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhHHHHHh
Confidence 6788999999999999888775431 25799999999999999999999874 67888887643210 0000
Q ss_pred hccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHHHHHhcCC--------
Q 009072 222 HNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTH-------- 293 (544)
Q Consensus 222 ~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~~~~~~~-------- 293 (544)
.....+. +..........+.. ....+|+|||++.+... .++.|..+++...
T Consensus 78 ~g~~~~~-~~g~~~~~~~~l~~---------------a~~~~l~lDEi~~l~~~-----~q~~Ll~~l~~~~~~~~g~~~ 136 (265)
T 2bjv_A 78 FGHEAGA-FTGAQKRHPGRFER---------------ADGGTLFLDELATAPMM-----VQEKLLRVIEYGELERVGGSQ 136 (265)
T ss_dssp HCCC----------CCCCHHHH---------------TTTSEEEEESGGGSCHH-----HHHHHHHHHHHCEECCCCC--
T ss_pred cCCcccc-cccccccccchhhh---------------cCCcEEEEechHhcCHH-----HHHHHHHHHHhCCeecCCCcc
Confidence 0000000 00000000000110 12459999999998653 3344555555421
Q ss_pred ---Cc-EEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCH--HHHHHHHHHH----HHHhCC----CCCHH
Q 009072 294 ---IP-TAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITN--GSIKRTLSKI----CRQEQY----SLSTE 359 (544)
Q Consensus 294 ---~p-iIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~--~~i~~~L~~i----~~~e~~----~i~~~ 359 (544)
.. .|+++++...... .....+ .+.+++|+....|.++|+.. +++..++..+ +...+. .++++
T Consensus 137 ~~~~~~~iI~atn~~~~~~--~~~~~~--~~~L~~Rl~~~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~ 212 (265)
T 2bjv_A 137 PLQVNVRLVCATNADLPAM--VNEGTF--RADLLDALAFDVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTER 212 (265)
T ss_dssp CEECCCEEEEEESSCHHHH--HHHTSS--CHHHHHHHCSEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHH
T ss_pred cccCCeEEEEecCcCHHHH--HHcCCc--cHHHHHhhcCcEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHH
Confidence 12 3333333110000 000001 14556665455788888875 5666554443 444454 68999
Q ss_pred HHHHHHHHc-CCcHHHHHHHHHHhcc
Q 009072 360 QIDLVAQAS-GGDIRQAITSLQFSSL 384 (544)
Q Consensus 360 ~l~~Ia~~s-~GDiR~aIn~Lq~~~~ 384 (544)
+++.|.... .||+|...+.++.++.
T Consensus 213 a~~~L~~~~~~gn~reL~~~l~~~~~ 238 (265)
T 2bjv_A 213 ARETLLNYRWPGNIRELKNVVERSVY 238 (265)
T ss_dssp HHHHHHHSCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence 999998775 8999999999988764
No 69
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.43 E-value=5.9e-13 Score=138.18 Aligned_cols=217 Identities=14% Similarity=0.154 Sum_probs=127.2
Q ss_pred hhccChHHHHHHHHHHHHhhcCCC----------------------CCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEE
Q 009072 150 ELAVQRKKVEEVRAWFEERLGDSK----------------------DKFSTNVLVITGQAGVGKTATVRQIASHLGARLY 207 (544)
Q Consensus 150 dLv~~~~~~~~l~~wL~~~~~~~~----------------------g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~vi 207 (544)
.++|++..++.|..++..+..... ...+...+||+||||||||++|+++|+.++.+++
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~ 101 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPIA 101 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 368999999999888742211000 1112368999999999999999999999999999
Q ss_pred EEeCCCchhhhhhhhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhH---------H
Q 009072 208 EWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTA---------F 278 (544)
Q Consensus 208 ei~~s~~~~~~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~---------~ 278 (544)
.++.+.... .+.........+..++...... + ....+.||||||++.+..... .
T Consensus 102 ~~~~~~~~~---------~~~~g~~~~~~~~~~~~~~~~~--~------~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~ 164 (376)
T 1um8_A 102 ISDATSLTE---------AGYVGEDVENILTRLLQASDWN--V------QKAQKGIVFIDEIDKISRLSENRSITRDVSG 164 (376)
T ss_dssp EEEGGGCC-----------------CTHHHHHHHHHTTTC--H------HHHTTSEEEEETGGGC--------------C
T ss_pred Eecchhhhh---------cCcCCccHHHHHHHHHhhccch--h------hhcCCeEEEEcCHHHHhhhcCCCceecccch
Confidence 988654210 0110001112233333321100 0 001356999999998854310 0
Q ss_pred HHHHHHHHHHHhcCC---------------------CcEEEEEccCCCC------------------CCC---C--cccc
Q 009072 279 ERLRQCLLLLVRSTH---------------------IPTAVVLTECGKA------------------DSV---D--STAQ 314 (544)
Q Consensus 279 ~~~~~~L~~~~~~~~---------------------~piIiI~t~~~~~------------------~~~---d--~~~~ 314 (544)
..+++.|+.+++... ..+++|++++... ... + ....
T Consensus 165 ~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~ 244 (376)
T 1um8_A 165 EGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILH 244 (376)
T ss_dssp HHHHHHHHHHHHCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGG
T ss_pred HHHHHHHHHHhhccceecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHh
Confidence 125667777777431 1224444432100 000 0 0000
Q ss_pred --------chHHHHHHHhhcCceeEEecCCCHHHHHHHHHH----HHH----H-----hCCCCCHHHHHHHHHHcC---C
Q 009072 315 --------SFEELQSILVDAGARKVALNPITNGSIKRTLSK----ICR----Q-----EQYSLSTEQIDLVAQASG---G 370 (544)
Q Consensus 315 --------~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~----i~~----~-----e~~~i~~~~l~~Ia~~s~---G 370 (544)
.....+++++|+ ..++.|+|++.+++..++.. ++. . .++.+++++++.|++.+. |
T Consensus 245 ~~~~~~l~~~~~~p~l~~R~-~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~ 323 (376)
T 1um8_A 245 LVQTHDLVTYGLIPELIGRL-PVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKT 323 (376)
T ss_dssp GCCHHHHHHTTCCHHHHTTC-CEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTC
T ss_pred hcCHHHHhhcCCChHHhcCC-CceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhccccc
Confidence 001125666774 36799999999999998862 222 1 135689999999999866 9
Q ss_pred cHHHHHHHHHHhcc
Q 009072 371 DIRQAITSLQFSSL 384 (544)
Q Consensus 371 DiR~aIn~Lq~~~~ 384 (544)
++|.+.+.++.++.
T Consensus 324 ~~R~L~~~le~~~~ 337 (376)
T 1um8_A 324 GARGLRAIIEDFCL 337 (376)
T ss_dssp TGGGHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHH
Confidence 99999999988765
No 70
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.41 E-value=4.4e-16 Score=176.54 Aligned_cols=277 Identities=14% Similarity=0.169 Sum_probs=163.3
Q ss_pred ccccccccccccCCccCccccccccccccccccccCCCCCCh----------hhhhhhhhhhhhccCcccccCCCCCCCC
Q 009072 58 KNVEHFLTPSRFEGLVNPKRDLALGSSSRQQLWTNKNKPCSL----------EEHAIQKENVGRFLTPSRFEGLVNPDHD 127 (544)
Q Consensus 58 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~i~~~~ed~~~~l~~~~i~~~~~~~~~ 127 (544)
.++++..++..++||+++..+.++..+...++...... ... ....+..+|+...+. .+ .+
T Consensus 392 ~~~~l~~la~~t~g~~g~dl~~l~~ea~~~a~r~~~~~-i~~~~~~~~~~~~~~~~v~~~d~~~al~--~~----~~--- 461 (806)
T 1ypw_A 392 DDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDL-IDLEDETIDAEVMNSLAVTMDDFRWALS--QS----NP--- 461 (806)
T ss_dssp TTCCTHHHHHSCSSCCHHHHHHHHHHHHHHHHHHTTTT-TSCHHHHCCHHHHTTCCCCTTHHHHHHH--HS----CC---
T ss_pred ccchhHHHHHhhcCcchHHHHHHHHHHHHHHHhhhccc-cchhhhccchhhhhhhhhhhhhhhcccc--cc----Cc---
Confidence 45677788889999999998888776655442111111 000 011222333333332 11 00
Q ss_pred CCCcCCCCCCCcccccCCCCcchhccChHHHHHHHHHHHHhhcCC-----CCCCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 009072 128 SASASSSTQQLWAEKYKPRSLEELAVQRKKVEEVRAWFEERLGDS-----KDKFSTNVLVITGQAGVGKTATVRQIASHL 202 (544)
Q Consensus 128 ~~~~~~~~~~lW~eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~-----~g~~~~~~lLL~GPpG~GKTtla~~lA~el 202 (544)
.....-....+..+++++++.++.+++|.+++......+ .+..+++.+||+||||||||++|+++|.++
T Consensus 462 ------s~~~~~~~~~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~ 535 (806)
T 1ypw_A 462 ------SALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC 535 (806)
T ss_dssp ------CCCCCCCCCCCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHH
T ss_pred ------hhhhhhcccCccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHh
Confidence 001112345566789999999999998888765432221 133455789999999999999999999999
Q ss_pred CCeEEEEeCCCchhhhhhhhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCch-------
Q 009072 203 GARLYEWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGR------- 275 (544)
Q Consensus 203 g~~viei~~s~~~~~~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~------- 275 (544)
+..++.++.++.. ..........+..+++.+.... |+||||||+|.+...
T Consensus 536 ~~~~i~v~~~~l~-----------~~~~g~~~~~i~~~f~~a~~~~------------p~vl~iDEid~l~~~r~~~~~~ 592 (806)
T 1ypw_A 536 QANFISIKGPELL-----------TMWFGESEANVREIFDKARQAA------------PCVLFFDELDSIAKARGGNIGD 592 (806)
T ss_dssp TCCCCCCCCSSST-----------TCCTTTSSHHHHHHHHHHHHHC------------SBCCCCSSHHHHCCTTTTCCSH
T ss_pred CCCEEEEechHhh-----------hhhcCccHHHHHHHHHHHHhcC------------CeEEEEEChhhhhhhccCCCCC
Confidence 9999988876532 1111223356677787776552 789999999976321
Q ss_pred --hHHHHHHHHHHHHHhc--CCCcEEEEEccCCCCCCCCccccchHHHHHHHh--hcCceeEEecCCCHHHHHHHHHHHH
Q 009072 276 --TAFERLRQCLLLLVRS--THIPTAVVLTECGKADSVDSTAQSFEELQSILV--DAGARKVALNPITNGSIKRTLSKIC 349 (544)
Q Consensus 276 --~~~~~~~~~L~~~~~~--~~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~--r~~~~~I~f~p~s~~~i~~~L~~i~ 349 (544)
....++.+.|+..++. ....+++|++++.. +..| .++++ |+ ...|.|++|+.++...+|+..+
T Consensus 593 ~~~~~~~v~~~LL~~ld~~~~~~~v~vI~tTN~~-~~ld---------~allrpgRf-~~~i~~~~p~~~~r~~Il~~~l 661 (806)
T 1ypw_A 593 GGGAADRVINQILTEMDGMSTKKNVFIIGATNRP-DIID---------PAILRPGRL-DQLIYIPLPDEKSRVAILKANL 661 (806)
T ss_dssp HHHHHHHHHHHHHTTCC------CCBCCCCCBSC-GGGS---------CTTSSGGGT-TSCCCCCCCCCSHHHHHTTTTT
T ss_pred cchhHHHHHHHHHHHHhcccccCCeEEEEecCCc-ccCC---------HHHhCcccc-CceeecCCCCHHHHHHHHHHHh
Confidence 1334555555544432 12234555554221 1111 23344 32 3589999999999999988776
Q ss_pred HHhCCCCCHHHHHHHHHH----cCCcHHHHHHHHHHhccC
Q 009072 350 RQEQYSLSTEQIDLVAQA----SGGDIRQAITSLQFSSLK 385 (544)
Q Consensus 350 ~~e~~~i~~~~l~~Ia~~----s~GDiR~aIn~Lq~~~~~ 385 (544)
....+. .+..++.|++. +++||+.+++.....+..
T Consensus 662 ~~~~~~-~~~~l~~la~~t~g~sgadi~~l~~~a~~~a~~ 700 (806)
T 1ypw_A 662 RKSPVA-KDVDLEFLAKMTNGFSGADLTEICQRACKLAIR 700 (806)
T ss_dssp SCC-----CCCCSCSCGGGSSSCCHHHHHHHHHHHHHHHS
T ss_pred ccCCCC-cccCHHHHHHhccccCHHHHHHHHHHHHHHHHH
Confidence 433221 11123334443 455888888877776654
No 71
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.37 E-value=3.1e-12 Score=145.05 Aligned_cols=202 Identities=17% Similarity=0.225 Sum_probs=129.9
Q ss_pred cccCCCCcchhccChHHHHHHHHHHHHhhcCCC-----CCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCCch
Q 009072 141 EKYKPRSLEELAVQRKKVEEVRAWFEERLGDSK-----DKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPT 215 (544)
Q Consensus 141 eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~-----g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~~~ 215 (544)
+.+.+.++++|+|.++.+++|++++......+. +..++..+||+|||||||||+|+++|.+++..++.+++++..
T Consensus 196 ~~~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~ 275 (806)
T 1ypw_A 196 ESLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM 275 (806)
T ss_dssp CCSSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHS
T ss_pred cccCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhh
Confidence 356778999999999999999999987554332 334457899999999999999999999999999999864311
Q ss_pred hhhhhhhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCch------hHHHHHHHHHHHHH
Q 009072 216 IWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGR------TAFERLRQCLLLLV 289 (544)
Q Consensus 216 ~~~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~------~~~~~~~~~L~~~~ 289 (544)
+.........+..+++.+... .|.++||||++.+... ....++.+.|..++
T Consensus 276 -----------~~~~g~~~~~l~~vf~~a~~~------------~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll 332 (806)
T 1ypw_A 276 -----------SKLAGESESNLRKAFEEAEKN------------APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLM 332 (806)
T ss_dssp -----------SSSTTHHHHHHHHHHHHHHHH------------CSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHH
T ss_pred -----------hhhhhhHHHHHHHHHHHHHhc------------CCcEEEeccHHHhhhccccccchHHHHHHHHHHHHh
Confidence 111122334566667666543 3789999999876431 22344556666666
Q ss_pred hcCC--CcEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 009072 290 RSTH--IPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQA 367 (544)
Q Consensus 290 ~~~~--~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i~~~~l~~Ia~~ 367 (544)
+... ..+++|+++.... ..+..... ..|+ ...+.+..|+.++...+|...+....+. .+..+..++..
T Consensus 333 ~g~~~~~~v~vI~atn~~~-~ld~al~r-------~gRf-~~~i~i~~p~~~~r~~il~~~~~~~~l~-~~~~l~~la~~ 402 (806)
T 1ypw_A 333 DGLKQRAHVIVMAATNRPN-SIDPALRR-------FGRF-DREVDIGIPDATGRLEILQIHTKNMKLA-DDVDLEQVANE 402 (806)
T ss_dssp HSSCTTSCCEEEEECSCTT-TSCTTTTS-------TTSS-CEEECCCCCCHHHHHHHHHHTTTTSCCC-TTCCTHHHHHS
T ss_pred hhhcccccEEEecccCCch-hcCHHHhc-------cccc-ccccccCCCCHHHHHHHHHHHHhcCCCc-ccchhHHHHHh
Confidence 6432 3445555443221 11111110 0122 3568999999999999888765543321 23345667776
Q ss_pred cCCcHHHH
Q 009072 368 SGGDIRQA 375 (544)
Q Consensus 368 s~GDiR~a 375 (544)
+.|.....
T Consensus 403 t~g~~g~d 410 (806)
T 1ypw_A 403 THGHVGAD 410 (806)
T ss_dssp CSSCCHHH
T ss_pred hcCcchHH
Confidence 66654443
No 72
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.36 E-value=7.5e-12 Score=141.65 Aligned_cols=214 Identities=15% Similarity=0.171 Sum_probs=130.6
Q ss_pred hhccChHHHHHHHHHHHHhhcCCC-CCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCCchhhhhhhhccccCc
Q 009072 150 ELAVQRKKVEEVRAWFEERLGDSK-DKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIWQEYMHNCKTGL 228 (544)
Q Consensus 150 dLv~~~~~~~~l~~wL~~~~~~~~-g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~~~~~~e~l~~~~~g~ 228 (544)
+++|++..++.|...+........ ...|...+||+||||||||++|+++|+.++.+++.++.+...... .+. ...|.
T Consensus 459 ~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~-~~~-~l~g~ 536 (758)
T 1r6b_X 459 LVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERH-TVS-RLIGA 536 (758)
T ss_dssp TSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSS-CCS-SSCCC
T ss_pred hccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchh-hHh-hhcCC
Confidence 478999999999998877543211 111225799999999999999999999999999999876532110 000 00010
Q ss_pred --ccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHHHHHhcCC-----------Cc
Q 009072 229 --EYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTH-----------IP 295 (544)
Q Consensus 229 --~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~~~~~~~-----------~p 295 (544)
+|... ..-..+.+.+.. ..+.||||||++.+.. .+++.|+++++.+. ..
T Consensus 537 ~~g~~g~-~~~~~l~~~~~~------------~~~~vl~lDEi~~~~~-----~~~~~Ll~~le~~~~~~~~g~~~~~~~ 598 (758)
T 1r6b_X 537 PPGYVGF-DQGGLLTDAVIK------------HPHAVLLLDEIEKAHP-----DVFNILLQVMDNGTLTDNNGRKADFRN 598 (758)
T ss_dssp CSCSHHH-HHTTHHHHHHHH------------CSSEEEEEETGGGSCH-----HHHHHHHHHHHHSEEEETTTEEEECTT
T ss_pred CCCCcCc-cccchHHHHHHh------------CCCcEEEEeCccccCH-----HHHHHHHHHhcCcEEEcCCCCEEecCC
Confidence 11110 000111222221 2357999999998753 35566777777542 12
Q ss_pred EEEEEccCC-CCCCCCc---c---------ccch--HHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHHh--------
Q 009072 296 TAVVLTECG-KADSVDS---T---------AQSF--EELQSILVDAGARKVALNPITNGSIKRTLSKICRQE-------- 352 (544)
Q Consensus 296 iIiI~t~~~-~~~~~d~---~---------~~~l--~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e-------- 352 (544)
+++|++.+. ....... + ...+ ...+++++|+ ..+|.|+|++.+++..++...+.+.
T Consensus 599 ~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~-~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~ 677 (758)
T 1r6b_X 599 VVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRL-DNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKG 677 (758)
T ss_dssp EEEEEEECSSCC-----------------CHHHHHHHSCHHHHTTC-SEEEECCCCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred eEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHhhC-CcceeeCCCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 444444322 1100000 0 0000 1114566664 3679999999999999999887632
Q ss_pred -CCCCCHHHHHHHHHHc---CCcHHHHHHHHHHhcc
Q 009072 353 -QYSLSTEQIDLVAQAS---GGDIRQAITSLQFSSL 384 (544)
Q Consensus 353 -~~~i~~~~l~~Ia~~s---~GDiR~aIn~Lq~~~~ 384 (544)
.+.+++++++.|++.+ ++++|...+.++..+.
T Consensus 678 ~~~~~~~~a~~~l~~~~~~~~~g~R~l~~~i~~~~~ 713 (758)
T 1r6b_X 678 VSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLK 713 (758)
T ss_dssp EEEEECHHHHHHHHHHHCBTTTBTTTHHHHHHHHHT
T ss_pred cEEEeCHHHHHHHHHhCCCcCCCchHHHHHHHHHHH
Confidence 3468999999999886 6667777777776654
No 73
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.35 E-value=1.8e-11 Score=123.28 Aligned_cols=206 Identities=12% Similarity=0.179 Sum_probs=122.5
Q ss_pred chhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeCCCchh--hhhhhhc
Q 009072 149 EELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTPTPTI--WQEYMHN 223 (544)
Q Consensus 149 ~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~el---g~~viei~~s~~~~--~~e~l~~ 223 (544)
++++|+....+++...+..... ....+||+||||||||++|+++++.. +.+++.++++.... ....+..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~------~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~~lfg 75 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAP------SDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLESELFG 75 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCS------TTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHHHHTC
T ss_pred CCcEECCHHHHHHHHHHHHHhC------CCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHHHhcC
Confidence 3578999999999988877532 12579999999999999999999975 57788888765321 0001100
Q ss_pred cccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHHHHHhcCC----------
Q 009072 224 CKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTH---------- 293 (544)
Q Consensus 224 ~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~~~~~~~---------- 293 (544)
...|.. ..........++.+ ...+|||||++.+... .+..|+.+++...
T Consensus 76 ~~~g~~-tg~~~~~~g~~~~a---------------~~g~L~LDEi~~l~~~-----~q~~Ll~~l~~~~~~~~g~~~~~ 134 (304)
T 1ojl_A 76 HEKGAF-TGADKRREGRFVEA---------------DGGTLFLDEIGDISPL-----MQVRLLRAIQEREVQRVGSNQTI 134 (304)
T ss_dssp CCSSCC-C---CCCCCHHHHH---------------TTSEEEEESCTTCCHH-----HHHHHHHHHHSSBCCBTTBCCCC
T ss_pred cccccc-CchhhhhcCHHHhc---------------CCCEEEEeccccCCHH-----HHHHHHHHHhcCEeeecCCcccc
Confidence 001100 00000000111111 1358999999998653 3344556665432
Q ss_pred -CcEEEEEccCCCCCCCCc-cccchHHHHHHHhhcCceeEEecCCC--HHHHHHHHHHHHH----HhC---CCCCHHHHH
Q 009072 294 -IPTAVVLTECGKADSVDS-TAQSFEELQSILVDAGARKVALNPIT--NGSIKRTLSKICR----QEQ---YSLSTEQID 362 (544)
Q Consensus 294 -~piIiI~t~~~~~~~~d~-~~~~l~~l~~ll~r~~~~~I~f~p~s--~~~i~~~L~~i~~----~e~---~~i~~~~l~ 362 (544)
..+.+|++++... ... ....+ -+.+..|+....|.++|+. .+++..++...+. ..+ ..+++++++
T Consensus 135 ~~~~riI~atn~~l--~~~v~~g~f--r~~L~~Rl~~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~ 210 (304)
T 1ojl_A 135 SVDVRLIAATHRDL--AEEVSAGRF--RQDLYYRLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMD 210 (304)
T ss_dssp BCCCEEEEEESSCH--HHHHHHTSS--CHHHHHHHSSEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHH
T ss_pred cCCeEEEEecCccH--HHHHHhCCc--HHHHHhhcCeeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHH
Confidence 1233343332110 000 00000 1345566556678888887 5666666655443 333 468999999
Q ss_pred HHHHHc-CCcHHHHHHHHHHhccC
Q 009072 363 LVAQAS-GGDIRQAITSLQFSSLK 385 (544)
Q Consensus 363 ~Ia~~s-~GDiR~aIn~Lq~~~~~ 385 (544)
.|...+ .||+|...|.++.++..
T Consensus 211 ~L~~~~wpGnvReL~~~l~~~~~~ 234 (304)
T 1ojl_A 211 LLIHYDWPGNIRELENAIERAVVL 234 (304)
T ss_dssp HHHHCCCSSHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCCCHHHHHHHHHHHHHh
Confidence 999987 89999999999987753
No 74
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.35 E-value=2.1e-11 Score=124.74 Aligned_cols=217 Identities=13% Similarity=0.077 Sum_probs=113.9
Q ss_pred ccCCCCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEE----EeCCCch--
Q 009072 142 KYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYE----WDTPTPT-- 215 (544)
Q Consensus 142 ky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~vie----i~~s~~~-- 215 (544)
.-+|.+|++++|++..++.+...+.. +. ..++||+||||||||++|+++|+.++..... ++.....
T Consensus 17 ~~~~~~f~~i~G~~~~~~~l~~~~~~------~~--~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~ 88 (350)
T 1g8p_A 17 TRPVFPFSAIVGQEDMKLALLLTAVD------PG--IGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMI 88 (350)
T ss_dssp -CCCCCGGGSCSCHHHHHHHHHHHHC------GG--GCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGGGS
T ss_pred CCCCCCchhccChHHHHHHHHHHhhC------CC--CceEEEECCCCccHHHHHHHHHHhCccccccccccccccccccc
Confidence 34678999999999866554332211 11 1469999999999999999999998632111 1110000
Q ss_pred hhhhhhhccc--------cCcccccchHH------HHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHH
Q 009072 216 IWQEYMHNCK--------TGLEYTSKLDE------FENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERL 281 (544)
Q Consensus 216 ~~~e~l~~~~--------~g~~~~s~~~~------~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~ 281 (544)
.....+.... ........... +...+....... ..... ....+.||||||++.+... .
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~--~~g~~-~~a~~~vl~iDEi~~l~~~-----~ 160 (350)
T 1g8p_A 89 PDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALDIERAISKGEKAF--EPGLL-ARANRGYLYIDECNLLEDH-----I 160 (350)
T ss_dssp CTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEECHHHHHHHCGGGE--ECCHH-HHHTTEEEEETTGGGSCHH-----H
T ss_pred cchhhhhccccccCCCcccccCCCcchhhheeechhhhhhcCCceee--cCcee-eecCCCEEEEeChhhCCHH-----H
Confidence 0000000000 00000000000 011111110000 00000 0012569999999998653 2
Q ss_pred HHHHHHHHhcCC-------------CcEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCH-HHHHHHHHH
Q 009072 282 RQCLLLLVRSTH-------------IPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITN-GSIKRTLSK 347 (544)
Q Consensus 282 ~~~L~~~~~~~~-------------~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~-~~i~~~L~~ 347 (544)
++.|+.+++... .++++|++.+... ..+ ..++++|+ ...+.+.+|+. +....++.+
T Consensus 161 ~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~-------~~l--~~~L~~R~-~~~~~l~~~~~~~~~~~il~~ 230 (350)
T 1g8p_A 161 VDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEE-------GDL--RPQLLDRF-GLSVEVLSPRDVETRVEVIRR 230 (350)
T ss_dssp HHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCS-------CCC--CHHHHTTC-SEEEECCCCCSHHHHHHHHHH
T ss_pred HHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCC-------CCC--CHHHHhhc-ceEEEcCCCCcHHHHHHHHHH
Confidence 344555555421 2455665542110 011 24667764 34599999954 444355544
Q ss_pred H-----------------------------HHHhCCCCCHHHHHHHHHHcCC----cHHHHHHHHHHhcc
Q 009072 348 I-----------------------------CRQEQYSLSTEQIDLVAQASGG----DIRQAITSLQFSSL 384 (544)
Q Consensus 348 i-----------------------------~~~e~~~i~~~~l~~Ia~~s~G----DiR~aIn~Lq~~~~ 384 (544)
+ ....++.+++++++.|+..+.| ++|.+++.|+.+..
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~ 300 (350)
T 1g8p_A 231 RDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEAPNTALYDCAALCIALGSDGLRGELTLLRSARA 300 (350)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHH
T ss_pred HHhcccCchhhccccccchHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHH
Confidence 2 2233568999999999998777 89999999987653
No 75
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.35 E-value=3.6e-12 Score=131.61 Aligned_cols=216 Identities=15% Similarity=0.175 Sum_probs=122.6
Q ss_pred hccChHHHHHHHHHHHHhhcC-------CCCCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCCchhhhhhhhc
Q 009072 151 LAVQRKKVEEVRAWFEERLGD-------SKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIWQEYMHN 223 (544)
Q Consensus 151 Lv~~~~~~~~l~~wL~~~~~~-------~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~~~~~~e~l~~ 223 (544)
++|++..++.+...+...... .....+++.+||+||||||||++|+++|+.++.+++.++.++.... .+
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~-~~--- 92 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEA-GY--- 92 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTC-HH---
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhccc-cc---
Confidence 589999999999888543211 0111234789999999999999999999999999999986531100 00
Q ss_pred cccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCch---------hHHHHHHHHHHHHHhcCC-
Q 009072 224 CKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGR---------TAFERLRQCLLLLVRSTH- 293 (544)
Q Consensus 224 ~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~---------~~~~~~~~~L~~~~~~~~- 293 (544)
.|. .....+..++..+... + ....+.||||||+|.+... ....++++.|+++++...
T Consensus 93 --~g~---~~~~~~~~~~~~~~~~--~------~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~ 159 (363)
T 3hws_A 93 --VGE---DVENIIQKLLQKCDYD--V------QKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVA 159 (363)
T ss_dssp --HHH---HHTHHHHHHHHHTTTC--H------HHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC--
T ss_pred --ccc---cHHHHHHHHHHHhhhh--H------HhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCcee
Confidence 000 0012333444332100 0 0013679999999966432 111236677888777211
Q ss_pred --------------------CcEEEEEccCCCCC---------C---CCc-----cc---c---------chH------H
Q 009072 294 --------------------IPTAVVLTECGKAD---------S---VDS-----TA---Q---------SFE------E 318 (544)
Q Consensus 294 --------------------~piIiI~t~~~~~~---------~---~d~-----~~---~---------~l~------~ 318 (544)
..+++|++...... . ... .. . ... .
T Consensus 160 ~~~~~~~~~~~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~ 239 (363)
T 3hws_A 160 AVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGL 239 (363)
T ss_dssp --------------CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTC
T ss_pred eccCccccccCCCceEEEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCC
Confidence 11233333221000 0 000 00 0 000 1
Q ss_pred HHHHHhhcCceeEEecCCCHHHHHHHHHH----HHHH-------hC--CCCCHHHHHHHHHH---cCCcHHHHHHHHHHh
Q 009072 319 LQSILVDAGARKVALNPITNGSIKRTLSK----ICRQ-------EQ--YSLSTEQIDLVAQA---SGGDIRQAITSLQFS 382 (544)
Q Consensus 319 l~~ll~r~~~~~I~f~p~s~~~i~~~L~~----i~~~-------e~--~~i~~~~l~~Ia~~---s~GDiR~aIn~Lq~~ 382 (544)
.++++.|+ ..++.|.|++.+++..++.. ++.+ .+ +.+++++++.|+.. ..|.+|..-|.++-+
T Consensus 240 ~~~l~~R~-~~~~~~~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~~ie~~ 318 (363)
T 3hws_A 240 IPEFIGRL-PVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAA 318 (363)
T ss_dssp CHHHHTTC-CEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHHHHHHH
T ss_pred CHHHhccc-CeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHHHHHHHHH
Confidence 24566664 55677999999999888875 3321 13 35799999999975 356566666666655
Q ss_pred cc
Q 009072 383 SL 384 (544)
Q Consensus 383 ~~ 384 (544)
+.
T Consensus 319 ~~ 320 (363)
T 3hws_A 319 LL 320 (363)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 76
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=99.34 E-value=1.6e-11 Score=125.67 Aligned_cols=165 Identities=12% Similarity=0.112 Sum_probs=116.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh---CCe---EEEEeCCCchhhhhhhhccccCcccccchHHHHHHHHHHHhhcCCCC
Q 009072 179 NVLVITGQAGVGKTATVRQIASHL---GAR---LYEWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSP 252 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~el---g~~---viei~~s~~~~~~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~ 252 (544)
+.+||+||+|.||+++++.+++.+ ++. ++++++ . ..++++++.+...+..
T Consensus 19 ~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---------------~-------~~~~~l~~~~~~~plf-- 74 (343)
T 1jr3_D 19 AAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDP---------------N-------TDWNAIFSLCQAMSLF-- 74 (343)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECCT---------------T-------CCHHHHHHHHHHHHHC--
T ss_pred cEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEecC---------------C-------CCHHHHHHHhcCcCCc--
Confidence 799999999999999999999875 331 222211 0 2234455554433211
Q ss_pred CCCCCCCCceEEEEecCCC-CCchhHHHHHHHHHHHHHhcCCCcEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeE
Q 009072 253 SIPGESKSSAILLIDDLPV-TNGRTAFERLRQCLLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKV 331 (544)
Q Consensus 253 ~~~~~~~~~~vIlIDEid~-l~~~~~~~~~~~~L~~~~~~~~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I 331 (544)
+.++||+|||++. ++.. ..++|+++++..+...++|+..+.. +........++++.++ |..+
T Consensus 75 ------~~~kvvii~~~~~kl~~~-----~~~aLl~~le~p~~~~~~il~~~~~----~~~~~~~k~~~~i~sr--~~~~ 137 (343)
T 1jr3_D 75 ------ASRQTLLLLLPENGPNAA-----INEQLLTLTGLLHDDLLLIVRGNKL----SKAQENAAWFTALANR--SVQV 137 (343)
T ss_dssp ------CSCEEEEEECCSSCCCTT-----HHHHHHHHHTTCBTTEEEEEEESCC----CTTTTTSHHHHHHTTT--CEEE
T ss_pred ------cCCeEEEEECCCCCCChH-----HHHHHHHHHhcCCCCeEEEEEcCCC----ChhhHhhHHHHHHHhC--ceEE
Confidence 3468999999998 7543 2356778888754444444332211 0000111223455454 8999
Q ss_pred EecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHhcc
Q 009072 332 ALNPITNGSIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIRQAITSLQFSSL 384 (544)
Q Consensus 332 ~f~p~s~~~i~~~L~~i~~~e~~~i~~~~l~~Ia~~s~GDiR~aIn~Lq~~~~ 384 (544)
.|.+++..++..+|..++..+|+.+++++++.|++.++||+|.+++.|+-++.
T Consensus 138 ~~~~l~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~gdl~~~~~elekl~l 190 (343)
T 1jr3_D 138 TCQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYCYEGNLLALAQALERLSL 190 (343)
T ss_dssp EECCCCTTHHHHHHHHHHHHTTCEECHHHHHHHHHSSTTCHHHHHHHHHHHHH
T ss_pred EeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhchHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998775
No 77
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.29 E-value=3.4e-11 Score=136.23 Aligned_cols=201 Identities=17% Similarity=0.215 Sum_probs=122.7
Q ss_pred chhccChHHHHHHHHHHHHhhcCCC-CCCCccEEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeCCCchhhhhhhhcc
Q 009072 149 EELAVQRKKVEEVRAWFEERLGDSK-DKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTPTPTIWQEYMHNC 224 (544)
Q Consensus 149 ~dLv~~~~~~~~l~~wL~~~~~~~~-g~~~~~~lLL~GPpG~GKTtla~~lA~el---g~~viei~~s~~~~~~e~l~~~ 224 (544)
.+++|++..++.+...+........ ...|...+||+||||||||++|+++|+.+ +.+++.++.+....
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~-------- 562 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYME-------- 562 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCS--------
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhccc--------
Confidence 4578999999999999987653211 11122379999999999999999999998 67899998764211
Q ss_pred ccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHHHHHhcCCC----------
Q 009072 225 KTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHI---------- 294 (544)
Q Consensus 225 ~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~~~~~~~~---------- 294 (544)
.. ..+ ...+ .+.+.. ..+.||||||++.+.. .+++.|+++++.+..
T Consensus 563 --~~-~~~-~~~l---~~~~~~------------~~~~vl~lDEi~~~~~-----~~~~~Ll~~le~g~~~~~~g~~~~~ 618 (758)
T 3pxi_A 563 --KH-STS-GGQL---TEKVRR------------KPYSVVLLDAIEKAHP-----DVFNILLQVLEDGRLTDSKGRTVDF 618 (758)
T ss_dssp --SC-CCC----C---HHHHHH------------CSSSEEEEECGGGSCH-----HHHHHHHHHHHHSBCC-----CCBC
T ss_pred --cc-ccc-cchh---hHHHHh------------CCCeEEEEeCccccCH-----HHHHHHHHHhccCeEEcCCCCEecc
Confidence 00 000 1111 122211 2356999999998754 345566666665321
Q ss_pred -cEEEEE-ccCCCCCCCCccccch-H-HHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHHh---------CCCCCHHHH
Q 009072 295 -PTAVVL-TECGKADSVDSTAQSF-E-ELQSILVDAGARKVALNPITNGSIKRTLSKICRQE---------QYSLSTEQI 361 (544)
Q Consensus 295 -piIiI~-t~~~~~~~~d~~~~~l-~-~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e---------~~~i~~~~l 361 (544)
.+++|+ ++..... .+.....+ . ..+++++|+ ..+|.|+|++.+++..++...+... .+.++++++
T Consensus 619 ~~~~iI~ttn~~~~~-~~~~~~~~~~~f~p~l~~Rl-~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~ 696 (758)
T 3pxi_A 619 RNTILIMTSNVGASE-KDKVMGELKRAFRPEFINRI-DEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAK 696 (758)
T ss_dssp TTCEEEEEESSSTTC-CHHHHHHHHHHSCHHHHTTS-SEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHH
T ss_pred CCeEEEEeCCCChhh-HHHHHHHHHhhCCHHHHhhC-CeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHH
Confidence 234444 4322111 00000000 0 114566664 3699999999999999998887642 346899999
Q ss_pred HHHHHH---cCCcHHHHHHHHHHhc
Q 009072 362 DLVAQA---SGGDIRQAITSLQFSS 383 (544)
Q Consensus 362 ~~Ia~~---s~GDiR~aIn~Lq~~~ 383 (544)
+.|++. -.|++|..-+.++-..
T Consensus 697 ~~l~~~~~~~~~~~R~L~~~i~~~v 721 (758)
T 3pxi_A 697 AKVAEEGVDLEYGARPLRRAIQKHV 721 (758)
T ss_dssp HHHHGGGCCTTTTTTTHHHHHHHHT
T ss_pred HHHHHhCCCCCCCChHHHHHHHHHH
Confidence 999875 3466666666555443
No 78
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.28 E-value=6e-11 Score=124.35 Aligned_cols=116 Identities=16% Similarity=0.219 Sum_probs=76.1
Q ss_pred ceEEEEecCCCCCch-----hH--HHHHHHHHHHHHhcC----------CCcEEEEEccCCCCCCCCccccchHHHHHHH
Q 009072 261 SAILLIDDLPVTNGR-----TA--FERLRQCLLLLVRST----------HIPTAVVLTECGKADSVDSTAQSFEELQSIL 323 (544)
Q Consensus 261 ~~vIlIDEid~l~~~-----~~--~~~~~~~L~~~~~~~----------~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll 323 (544)
..|+++||+|.+... .+ -.+++++|+++++.. ...++|||+...... ...+.+++++
T Consensus 251 ~~il~~DEidki~~~~~~~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~------~~~dlipel~ 324 (444)
T 1g41_A 251 NGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVA------RPSDLIPELQ 324 (444)
T ss_dssp HCEEEEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSC------CGGGSCHHHH
T ss_pred CCeeeHHHHHHHhhccCCCCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccC------ChhhcchHHh
Confidence 348999999987432 22 234778999999863 234678877532210 1222346777
Q ss_pred hhcCceeEEecCCCHHHHHHHHHH-----------HHHHhC--CCCCHHHHHHHHHH--------cCCcHHHHHHHHHHh
Q 009072 324 VDAGARKVALNPITNGSIKRTLSK-----------ICRQEQ--YSLSTEQIDLVAQA--------SGGDIRQAITSLQFS 382 (544)
Q Consensus 324 ~r~~~~~I~f~p~s~~~i~~~L~~-----------i~~~e~--~~i~~~~l~~Ia~~--------s~GDiR~aIn~Lq~~ 382 (544)
.|+ ..+|.|++++.+++..++.. .+..++ +.++++++..|++. -++..|..-+.++-.
T Consensus 325 ~R~-~i~i~l~~lt~~e~~~Il~~~~~~l~~q~~~~~~~~~~~l~~~~~al~~i~~~a~~~~~~t~~~GaR~L~~~ie~~ 403 (444)
T 1g41_A 325 GRL-PIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERL 403 (444)
T ss_dssp TTC-CEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHH
T ss_pred ccc-ceeeeCCCCCHHHHHHHHHHHHHhHHHHHHHHhcccCceEEECHHHHHHHHHHHHHhccCCccCCchHHHHHHHHH
Confidence 774 44699999999999999841 222234 35899999999986 246667666666655
Q ss_pred c
Q 009072 383 S 383 (544)
Q Consensus 383 ~ 383 (544)
+
T Consensus 404 ~ 404 (444)
T 1g41_A 404 M 404 (444)
T ss_dssp H
T ss_pred H
Confidence 5
No 79
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.25 E-value=6.3e-11 Score=135.62 Aligned_cols=214 Identities=16% Similarity=0.171 Sum_probs=130.9
Q ss_pred chhccChHHHHHHHHHHHHhhcCC-CCCCCccEEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeCCCchhh---hhhh
Q 009072 149 EELAVQRKKVEEVRAWFEERLGDS-KDKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTPTPTIW---QEYM 221 (544)
Q Consensus 149 ~dLv~~~~~~~~l~~wL~~~~~~~-~g~~~~~~lLL~GPpG~GKTtla~~lA~el---g~~viei~~s~~~~~---~e~l 221 (544)
.+++|++..++.|...+....... ....|...+||+||||||||++|+++++.+ +.+++.++.+..... ...+
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~s~l~ 637 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLI 637 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGGGGC-
T ss_pred cccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHHHHHc
Confidence 467999999999999998764311 011122589999999999999999999998 788999988764311 0000
Q ss_pred hccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHHHHHhcCC--------
Q 009072 222 HNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTH-------- 293 (544)
Q Consensus 222 ~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~~~~~~~-------- 293 (544)
.......++. ....+.+.+.. ..+.||||||++.+.. .+++.|+++++.+.
T Consensus 638 g~~~~~~G~~----~~g~l~~~~~~------------~~~~vl~lDEi~~l~~-----~~~~~Ll~~l~~~~~~~~~g~~ 696 (854)
T 1qvr_A 638 GAPPGYVGYE----EGGQLTEAVRR------------RPYSVILFDEIEKAHP-----DVFNILLQILDDGRLTDSHGRT 696 (854)
T ss_dssp -----------------CHHHHHHH------------CSSEEEEESSGGGSCH-----HHHHHHHHHHTTTEECCSSSCC
T ss_pred CCCCCCcCcc----ccchHHHHHHh------------CCCeEEEEecccccCH-----HHHHHHHHHhccCceECCCCCE
Confidence 0000000110 00122222221 1257999999998753 35567788887652
Q ss_pred ---CcEEEEEccCCC-CCCCC----cc-ccchH-H---------HHHHHhhcCceeEEecCCCHHHHHHHHHHHHHHh--
Q 009072 294 ---IPTAVVLTECGK-ADSVD----ST-AQSFE-E---------LQSILVDAGARKVALNPITNGSIKRTLSKICRQE-- 352 (544)
Q Consensus 294 ---~piIiI~t~~~~-~~~~d----~~-~~~l~-~---------l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~e-- 352 (544)
..+++|++++.. ....+ .. ...+. . -+.+++|+ ..++.|.|++.+++..++...+...
T Consensus 697 vd~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~Rl-~~~i~~~pl~~edi~~i~~~~l~~~~~ 775 (854)
T 1qvr_A 697 VDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRL-DEIVVFRPLTKEQIRQIVEIQLSYLRA 775 (854)
T ss_dssp EECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTC-SBCCBCCCCCHHHHHHHHHHHHHHHHH
T ss_pred eccCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHHhc-CeEEeCCCCCHHHHHHHHHHHHHHHHH
Confidence 134444443210 00000 00 00000 0 03455553 3688999999999999988877531
Q ss_pred -------CCCCCHHHHHHHHHHcC---CcHHHHHHHHHHhcc
Q 009072 353 -------QYSLSTEQIDLVAQASG---GDIRQAITSLQFSSL 384 (544)
Q Consensus 353 -------~~~i~~~~l~~Ia~~s~---GDiR~aIn~Lq~~~~ 384 (544)
.+.+++++++.|+..+. |++|..-+.++....
T Consensus 776 ~~~~~~~~~~~~~~a~~~L~~~~~~~~gn~R~L~~~i~~~~~ 817 (854)
T 1qvr_A 776 RLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELE 817 (854)
T ss_dssp HHHTTTCEEEECHHHHHHHHHHHCBTTTBTSTHHHHHHHHTH
T ss_pred HHHhCCceEEECHHHHHHHHHcCCCCCCChHHHHHHHHHHHH
Confidence 24689999999999865 999888888887664
No 80
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.21 E-value=5.6e-10 Score=113.57 Aligned_cols=202 Identities=12% Similarity=0.092 Sum_probs=119.4
Q ss_pred CCCCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCCch--------
Q 009072 144 KPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPT-------- 215 (544)
Q Consensus 144 ~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~~~-------- 215 (544)
+|.....++|+++.+++|..++.. | +.++|+||+|+|||++++.++++.+ ++.++.....
T Consensus 7 ~~~~~~~~~gR~~el~~L~~~l~~------~----~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~~~~~~ 74 (350)
T 2qen_A 7 PKTRREDIFDREEESRKLEESLEN------Y----PLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAERGHITR 74 (350)
T ss_dssp CCCSGGGSCSCHHHHHHHHHHHHH------C----SEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTTTCBCH
T ss_pred CCCChHhcCChHHHHHHHHHHHhc------C----CeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeecccccccCCCH
Confidence 445667899999999999999875 2 5899999999999999999999986 4444432211
Q ss_pred -hhhhhhhc-ccc---------------CcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCch--h
Q 009072 216 -IWQEYMHN-CKT---------------GLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGR--T 276 (544)
Q Consensus 216 -~~~e~l~~-~~~---------------g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~--~ 276 (544)
.....+.. ... +.........+..++..+.... ....+.+|+|||++.+... .
T Consensus 75 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--------~~~~~~vlvlDe~~~~~~~~~~ 146 (350)
T 2qen_A 75 EELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLG--------EELGEFIVAFDEAQYLRFYGSR 146 (350)
T ss_dssp HHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHH--------HHHSCEEEEEETGGGGGGBTTT
T ss_pred HHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHH--------hccCCEEEEEeCHHHHhccCcc
Confidence 11111110 000 1000000112233333222211 0012789999999987540 0
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEEEccCCCCCCCCccccchHHH-------HHHHhhcCceeEEecCCCHHHHHHHHHHHH
Q 009072 277 AFERLRQCLLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEEL-------QSILVDAGARKVALNPITNGSIKRTLSKIC 349 (544)
Q Consensus 277 ~~~~~~~~L~~~~~~~~~piIiI~t~~~~~~~~d~~~~~l~~l-------~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~ 349 (544)
....+...|..+.+... ++.+|++.... ..+..+ .++..+ ....+.+.|++.+++..++...+
T Consensus 147 ~~~~~~~~L~~~~~~~~-~~~~il~g~~~--------~~l~~~l~~~~~~~~l~~~-~~~~i~l~pl~~~e~~~~l~~~~ 216 (350)
T 2qen_A 147 GGKELLALFAYAYDSLP-NLKIILTGSEV--------GLLHDFLKITDYESPLYGR-IAGEVLVKPFDKDTSVEFLKRGF 216 (350)
T ss_dssp TTHHHHHHHHHHHHHCT-TEEEEEEESSH--------HHHHHHHCTTCTTSTTTTC-CCEEEECCCCCHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHhcC-CeEEEEECCcH--------HHHHHHHhhcCCCCccccC-ccceeeCCCCCHHHHHHHHHHHH
Confidence 01123344444444332 34444443210 000110 011112 24589999999999999999888
Q ss_pred HHhCCCCCHHHHHHHHHHcCCcHHHH
Q 009072 350 RQEQYSLSTEQIDLVAQASGGDIRQA 375 (544)
Q Consensus 350 ~~e~~~i~~~~l~~Ia~~s~GDiR~a 375 (544)
...+..++++.+..|+..++|.....
T Consensus 217 ~~~~~~~~~~~~~~i~~~tgG~P~~l 242 (350)
T 2qen_A 217 REVNLDVPENEIEEAVELLDGIPGWL 242 (350)
T ss_dssp HTTTCCCCHHHHHHHHHHHTTCHHHH
T ss_pred HHcCCCCCHHHHHHHHHHhCCCHHHH
Confidence 77788889999999999999999753
No 81
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.15 E-value=1.9e-10 Score=102.58 Aligned_cols=57 Identities=14% Similarity=0.211 Sum_probs=45.8
Q ss_pred hhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeCCC
Q 009072 150 ELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTPT 213 (544)
Q Consensus 150 dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~el---g~~viei~~s~ 213 (544)
+++|+...++++.+.+..... ....+||+||||||||++|+++++.. +.+++ ++++.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~------~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~ 61 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSE------TDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELT 61 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTT------CCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECC
T ss_pred CceeCCHHHHHHHHHHHHHhC------CCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCC
Confidence 578999999999999887642 11579999999999999999999986 67777 77654
No 82
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.07 E-value=1.3e-10 Score=107.32 Aligned_cols=69 Identities=19% Similarity=0.214 Sum_probs=47.4
Q ss_pred cccCCCCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHh----CCeEEEEe
Q 009072 141 EKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL----GARLYEWD 210 (544)
Q Consensus 141 eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~el----g~~viei~ 210 (544)
++|++.+|++++......+++...+..+.... ...++..++|+||||+||||++++++..+ |..++.++
T Consensus 2 ~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~ 74 (180)
T 3ec2_A 2 KRYWNANLDTYHPKNVSQNRALLTIRVFVHNF-NPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFD 74 (180)
T ss_dssp CSCTTCCSSSCCCCSHHHHHHHHHHHHHHHSC-CGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEE
T ss_pred chhhhCccccccCCCHHHHHHHHHHHHHHHhc-cccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEE
Confidence 68999999999875444444444444433211 11223789999999999999999999887 55555444
No 83
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.04 E-value=3.2e-09 Score=113.48 Aligned_cols=192 Identities=11% Similarity=0.117 Sum_probs=108.7
Q ss_pred hhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhCC--eEEEEeCCCchhhhhhhhccccC
Q 009072 150 ELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGA--RLYEWDTPTPTIWQEYMHNCKTG 227 (544)
Q Consensus 150 dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg~--~viei~~s~~~~~~e~l~~~~~g 227 (544)
.++|++..++.+...+.. + .++||+||||||||++|+++|+.++. .+..++.... ...+.++ .
T Consensus 23 ~ivGq~~~i~~l~~al~~------~----~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~-t~~dL~G----~ 87 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALS------G----ESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFS-TPEEVFG----P 87 (500)
T ss_dssp TCSSCHHHHHHHHHHHHH------T----CEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTC-CHHHHHC----C
T ss_pred hhHHHHHHHHHHHHHHhc------C----CeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcC-CHHHhcC----c
Confidence 467888888887776654 2 58999999999999999999998853 3333332210 0000000 0
Q ss_pred cccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHHHHHhcC-----------CCcE
Q 009072 228 LEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRST-----------HIPT 296 (544)
Q Consensus 228 ~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~~~~~~-----------~~pi 296 (544)
.... . ......+... ..+.-..+.|++|||++.+.. ..++.|+..++.. ..++
T Consensus 88 ~~~~-------~-~~~~g~~~~~---~~g~l~~~~IL~IDEI~r~~~-----~~q~~LL~~lee~~v~i~G~~~~~~~~~ 151 (500)
T 3nbx_X 88 LSIQ-------A-LKDEGRYERL---TSGYLPEAEIVFLDEIWKAGP-----AILNTLLTAINERQFRNGAHVEKIPMRL 151 (500)
T ss_dssp BC------------------CBC---CTTSGGGCSEEEEESGGGCCH-----HHHHHHHHHHHSSEEECSSSEEECCCCE
T ss_pred ccHH-------H-HhhchhHHhh---hccCCCcceeeeHHhHhhhcH-----HHHHHHHHHHHHHhccCCCCcCCcchhh
Confidence 0000 0 0000011000 001001356999999988753 3445566666532 2345
Q ss_pred EEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCH-HHHHHHHHHHH-----------------------HHh
Q 009072 297 AVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITN-GSIKRTLSKIC-----------------------RQE 352 (544)
Q Consensus 297 IiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~-~~i~~~L~~i~-----------------------~~e 352 (544)
++++|+..+. . . ....++++|+ ...+.+++|+. ++...+|.... ...
T Consensus 152 iI~ATN~lpe--~---~---~~~~aLldRF-~~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~ 222 (500)
T 3nbx_X 152 LVAASNELPE--A---D---SSLEALYDRM-LIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIG 222 (500)
T ss_dssp EEEEESSCCC--T---T---CTTHHHHTTC-CEEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHT
T ss_pred hhhccccCCC--c---c---ccHHHHHHHH-HHHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCC
Confidence 4555542111 0 0 1125778886 67788999887 55566665432 123
Q ss_pred CCCCCHHHHHHHHHHc----------CCcHHHHHHHHHH
Q 009072 353 QYSLSTEQIDLVAQAS----------GGDIRQAITSLQF 381 (544)
Q Consensus 353 ~~~i~~~~l~~Ia~~s----------~GDiR~aIn~Lq~ 381 (544)
++.+++++++.|+... +.+.|.++..+..
T Consensus 223 ~v~v~d~v~e~i~~l~~~lr~~r~~~~iS~R~~~~llr~ 261 (500)
T 3nbx_X 223 EITLPDHVFELIFMLRQQLDKLPDAPYVSDRRWKKAIRL 261 (500)
T ss_dssp TCBCCHHHHHHHHHHHHHHHHCSSSCCCCHHHHHHHHHH
T ss_pred cccCchHHHHHHHHHHHHhhcCCCCCccchhHHHHHHHH
Confidence 6778999999888776 5577886665543
No 84
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.04 E-value=8e-10 Score=98.26 Aligned_cols=57 Identities=14% Similarity=0.070 Sum_probs=45.1
Q ss_pred hhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCC
Q 009072 150 ELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPT 213 (544)
Q Consensus 150 dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~ 213 (544)
+++|+...++++.+.+...... ...+||+||||||||++|++++++.+ +++.++++.
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~------~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~ 61 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKR------TSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVE 61 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTC------SSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTT
T ss_pred CceeCCHHHHHHHHHHHHHhCC------CCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhh
Confidence 5789999999999998876431 15699999999999999999999888 777777654
No 85
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.01 E-value=5.3e-09 Score=106.49 Aligned_cols=199 Identities=13% Similarity=0.152 Sum_probs=115.4
Q ss_pred CCCCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCCc--------h
Q 009072 144 KPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTP--------T 215 (544)
Q Consensus 144 ~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~~--------~ 215 (544)
.+.....++|+++.+++|.. +.. +.++|+||+|+|||++++.++++++..++.++.... .
T Consensus 8 ~~~~~~~~~gR~~el~~L~~-l~~-----------~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (357)
T 2fna_A 8 PKDNRKDFFDREKEIEKLKG-LRA-----------PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYISYK 75 (357)
T ss_dssp CCCSGGGSCCCHHHHHHHHH-TCS-----------SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCSCCCHH
T ss_pred CCCCHHHhcChHHHHHHHHH-hcC-----------CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhccccCCCHH
Confidence 34455778999998888876 521 489999999999999999999998777666665421 1
Q ss_pred hhhhhhhc-c----------------ccCc-------cccc---chHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEec
Q 009072 216 IWQEYMHN-C----------------KTGL-------EYTS---KLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDD 268 (544)
Q Consensus 216 ~~~e~l~~-~----------------~~g~-------~~~s---~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDE 268 (544)
.+...+.. . ..++ .... ....+..++..+.... .++.+|+|||
T Consensus 76 ~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~----------~~~~vlvlDe 145 (357)
T 2fna_A 76 DFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQAS----------KDNVIIVLDE 145 (357)
T ss_dssp HHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTC----------SSCEEEEEET
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcC----------CCCeEEEEEC
Confidence 11111000 0 0000 0000 0122444555444321 1378999999
Q ss_pred CCCCCchhHHHHHHHHHHHHHhcCCCcEEEEEccCCCCCCCCccccchHHHHHH---------HhhcCceeEEecCCCHH
Q 009072 269 LPVTNGRTAFERLRQCLLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSI---------LVDAGARKVALNPITNG 339 (544)
Q Consensus 269 id~l~~~~~~~~~~~~L~~~~~~~~~piIiI~t~~~~~~~~d~~~~~l~~l~~l---------l~r~~~~~I~f~p~s~~ 339 (544)
++.+..... ..+...|..+.+... ++.+|++.... ..+..+ +.......+.+.|++.+
T Consensus 146 ~~~~~~~~~-~~~~~~l~~~~~~~~-~~~~i~~g~~~-----------~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~ 212 (357)
T 2fna_A 146 AQELVKLRG-VNLLPALAYAYDNLK-RIKFIMSGSEM-----------GLLYDYLRVEDPESPLFGRAFSTVELKPFSRE 212 (357)
T ss_dssp GGGGGGCTT-CCCHHHHHHHHHHCT-TEEEEEEESSH-----------HHHHHHTTTTCTTSTTTTCCCEEEEECCCCHH
T ss_pred HHHhhccCc-hhHHHHHHHHHHcCC-CeEEEEEcCch-----------HHHHHHHhccCCCCccccCccceeecCCCCHH
Confidence 998753100 012223333333322 34344433210 001111 11111368999999999
Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHH
Q 009072 340 SIKRTLSKICRQEQYSLSTEQIDLVAQASGGDIRQAITSL 379 (544)
Q Consensus 340 ~i~~~L~~i~~~e~~~i~~~~l~~Ia~~s~GDiR~aIn~L 379 (544)
++..++...+...+...++. ..|+..++|.........
T Consensus 213 e~~~~l~~~~~~~~~~~~~~--~~i~~~t~G~P~~l~~~~ 250 (357)
T 2fna_A 213 EAIEFLRRGFQEADIDFKDY--EVVYEKIGGIPGWLTYFG 250 (357)
T ss_dssp HHHHHHHHHHHHHTCCCCCH--HHHHHHHCSCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCcH--HHHHHHhCCCHHHHHHHH
Confidence 99999998877667666554 889999999988644433
No 86
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.99 E-value=2.7e-09 Score=104.05 Aligned_cols=42 Identities=24% Similarity=0.169 Sum_probs=34.1
Q ss_pred HHHHHHHHhhcCCCCC-CCccEEEEEcCCCCcHHHHHHHHHHHhCC
Q 009072 160 EVRAWFEERLGDSKDK-FSTNVLVITGQAGVGKTATVRQIASHLGA 204 (544)
Q Consensus 160 ~l~~wL~~~~~~~~g~-~~~~~lLL~GPpG~GKTtla~~lA~elg~ 204 (544)
.+..|+..|.. +. ++.+.++|+||||||||+++.+||+.++.
T Consensus 88 ~~~~~l~~~l~---~~~~~~n~~~l~GppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 88 YAASVFLGWAT---KKFGKRNTIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp HHHHHHHHHHT---TCSTTCCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHh---CCCCCCcEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 55667777776 44 43468999999999999999999998755
No 87
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.94 E-value=3.6e-09 Score=116.46 Aligned_cols=54 Identities=17% Similarity=0.286 Sum_probs=48.0
Q ss_pred ccccCCCCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhC
Q 009072 140 AEKYKPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLG 203 (544)
Q Consensus 140 ~eky~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg 203 (544)
..+|+|+.+++++|++..++.+...+.. | ..++|+|||||||||+|+++|+.+.
T Consensus 32 ~~~~rp~~l~~i~G~~~~l~~l~~~i~~------g----~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 32 EIEVPEKLIDQVIGQEHAVEVIKTAANQ------K----RHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp GSCCCSSHHHHCCSCHHHHHHHHHHHHT------T----CCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred cccccccccceEECchhhHhhccccccC------C----CEEEEEeCCCCCHHHHHHHHhccCC
Confidence 5689999999999999999888877754 2 5799999999999999999999875
No 88
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.92 E-value=1.4e-09 Score=102.25 Aligned_cols=69 Identities=22% Similarity=0.246 Sum_probs=49.8
Q ss_pred ccccCCCCcchhccChH----HHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeCC
Q 009072 140 AEKYKPRSLEELAVQRK----KVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTP 212 (544)
Q Consensus 140 ~eky~P~~~~dLv~~~~----~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~el---g~~viei~~s 212 (544)
..+|++.+|+++++... .++.+..|+..+.. +. .++.++|+||||+|||++|+++++++ +..++.++.+
T Consensus 16 ~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~ 91 (202)
T 2w58_A 16 PREILRASLSDVDLNDDGRIKAIRFAERFVAEYEP---GK-KMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVP 91 (202)
T ss_dssp CGGGGCCCTTSSCCSSHHHHHHHHHHHHHHHHCCS---SC-CCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHH
T ss_pred CHHHHcCCHhhccCCChhHHHHHHHHHHHHHHhhh---cc-CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhH
Confidence 45788889999997553 44555566655321 11 12689999999999999999999987 6677766654
No 89
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.88 E-value=1e-08 Score=95.71 Aligned_cols=45 Identities=16% Similarity=0.294 Sum_probs=34.1
Q ss_pred HHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 009072 158 VEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEW 209 (544)
Q Consensus 158 ~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei 209 (544)
+..++.|++ +.+..+.+||+||||||||++|.++|+.++..++.+
T Consensus 45 ~~~l~~~~~-------~iPkkn~ili~GPPGtGKTt~a~ala~~l~g~i~~f 89 (212)
T 1tue_A 45 LGALKSFLK-------GTPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVISF 89 (212)
T ss_dssp HHHHHHHHH-------TCTTCSEEEEESCGGGCHHHHHHHHHHHHTCEECCC
T ss_pred HHHHHHHHh-------cCCcccEEEEECCCCCCHHHHHHHHHHHhCCCeeeE
Confidence 445555554 334346899999999999999999999998766543
No 90
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.70 E-value=1.5e-07 Score=84.24 Aligned_cols=85 Identities=13% Similarity=0.119 Sum_probs=56.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeCCCchhhhhhhhccccCcccccchHHHHHHHHHHHhhcCCCCCCC
Q 009072 179 NVLVITGQAGVGKTATVRQIASHL---GARLYEWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIP 255 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~el---g~~viei~~s~~~~~~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~ 255 (544)
..++|+||+|+||||++++++..+ |..++.++..+... . .+ .
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~----------~-----------~~------~-------- 81 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPL----------T-----------DA------A-------- 81 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCC----------C-----------GG------G--------
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhH----------H-----------HH------H--------
Confidence 689999999999999999999988 77777777654210 0 00 0
Q ss_pred CCCCCceEEEEecCCCCCchhHHHHHHHHHHHHHhcCCCcEEEEEccC
Q 009072 256 GESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPTAVVLTEC 303 (544)
Q Consensus 256 ~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~~~~~~~~piIiI~t~~ 303 (544)
.++.+|+|||++.+.... ...+.+.+..+.+.+ .++++|+++.
T Consensus 82 ---~~~~lLilDE~~~~~~~~-~~~l~~li~~~~~~g-~~~iiits~~ 124 (149)
T 2kjq_A 82 ---FEAEYLAVDQVEKLGNEE-QALLFSIFNRFRNSG-KGFLLLGSEY 124 (149)
T ss_dssp ---GGCSEEEEESTTCCCSHH-HHHHHHHHHHHHHHT-CCEEEEEESS
T ss_pred ---hCCCEEEEeCccccChHH-HHHHHHHHHHHHHcC-CcEEEEECCC
Confidence 236699999999876543 334445555555543 3345566553
No 91
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.69 E-value=1.2e-08 Score=102.56 Aligned_cols=68 Identities=18% Similarity=0.316 Sum_probs=48.7
Q ss_pred ccccCCCCcchhccCh----HHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhC----CeEEEEeC
Q 009072 140 AEKYKPRSLEELAVQR----KKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLG----ARLYEWDT 211 (544)
Q Consensus 140 ~eky~P~~~~dLv~~~----~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg----~~viei~~ 211 (544)
.+.+++.+|+++.+.. ..+..+..|+..+.. + +.+.++|+||||||||++|.++|+++. ..++.+..
T Consensus 115 ~~~~~~~tfd~f~~~~~~~~~~~~~~~~~i~~~~~---~--~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~ 189 (308)
T 2qgz_A 115 PKSYRHIHLSDIDVNNASRMEAFSAILDFVEQYPS---A--EQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHF 189 (308)
T ss_dssp CGGGGSCCGGGSCCCSHHHHHHHHHHHHHHHHCSC---S--SCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEH
T ss_pred CHHHHhCCHhhCcCCChHHHHHHHHHHHHHHhccc---c--CCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEH
Confidence 3467788999998744 244455566665421 1 237899999999999999999998654 77776665
Q ss_pred C
Q 009072 212 P 212 (544)
Q Consensus 212 s 212 (544)
+
T Consensus 190 ~ 190 (308)
T 2qgz_A 190 P 190 (308)
T ss_dssp H
T ss_pred H
Confidence 4
No 92
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.57 E-value=2e-07 Score=115.93 Aligned_cols=185 Identities=12% Similarity=0.089 Sum_probs=104.6
Q ss_pred CCcccccCCC-------CcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHH-HHHHHHhCCeEEE
Q 009072 137 QLWAEKYKPR-------SLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATV-RQIASHLGARLYE 208 (544)
Q Consensus 137 ~lW~eky~P~-------~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla-~~lA~elg~~vie 208 (544)
..|.++.++. .+.+++++.....+...++..+.. .++++||+||||||||++| +++++..++.++.
T Consensus 1225 ~~W~~~v~~~~~~~~~~~~~~iiVpT~DT~R~~~ll~~~l~------~~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~ 1298 (2695)
T 4akg_A 1225 SSFCSEIPSVSLEAHEVMRPDIVIPTIDTIKHEKIFYDLLN------SKRGIILCGPPGSGKTMIMNNALRNSSLYDVVG 1298 (2695)
T ss_dssp BCCCCCCCCCCCCSGGGSCSSCCCCCHHHHHHHHHHHHHHH------HTCEEEEECSTTSSHHHHHHHHHHSCSSCEEEE
T ss_pred eechhcCCCcccCccccCccceeEeccchHHHHHHHHHHHH------CCCeEEEECCCCCCHHHHHHHHHhcCCCCceEE
Confidence 4577765432 345566665555555555655543 1278999999999999999 5555555788888
Q ss_pred EeCCCchhhhhhhhccccCcccccchHHHHHHHHHHHhhcCCC-CCCCC--CCCCceEEEEecCCCCCchh-HHHHHHHH
Q 009072 209 WDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTS-PSIPG--ESKSSAILLIDDLPVTNGRT-AFERLRQC 284 (544)
Q Consensus 209 i~~s~~~~~~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~-~~~~~--~~~~~~vIlIDEid~l~~~~-~~~~~~~~ 284 (544)
++.+... ....+...++......... ....+ ..+++.||||||++...... ......+.
T Consensus 1299 infsa~t-----------------s~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~VlFiDEinmp~~d~yg~q~~lel 1361 (2695)
T 4akg_A 1299 INFSKDT-----------------TTEHILSALHRHTNYVTTSKGLTLLPKSDIKNLVLFCDEINLPKLDKYGSQNVVLF 1361 (2695)
T ss_dssp EECCTTC-----------------CHHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEEEEEETTTCSCCCSSSCCHHHHH
T ss_pred EEeecCC-----------------CHHHHHHHHHHHhhhccccCCccccCCCCCceEEEEecccccccccccCchhHHHH
Confidence 8765421 1123444444321110000 00000 12457899999987532110 01234466
Q ss_pred HHHHHhcCC------------CcEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHH
Q 009072 285 LLLLVRSTH------------IPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQ 351 (544)
Q Consensus 285 L~~~~~~~~------------~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~ 351 (544)
|+++++.+. ..+.+|++....+.. .+....+++++| +.+|.++.|+.+++..++..++..
T Consensus 1362 LRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~g-----GR~~l~~rllRr--f~vi~i~~P~~~~l~~I~~~il~~ 1433 (2695)
T 4akg_A 1362 LRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDP-----GRIPMSERFTRH--AAILYLGYPSGKSLSQIYEIYYKA 1433 (2695)
T ss_dssp HHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTST-----TCCCCCHHHHTT--EEEEECCCCTTTHHHHHHHHHHHH
T ss_pred HHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccC-----CCccCChhhhhe--eeEEEeCCCCHHHHHHHHHHHHHH
Confidence 777776532 134555554332100 011111345554 689999999999999999988764
No 93
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.55 E-value=8.9e-08 Score=101.78 Aligned_cols=61 Identities=21% Similarity=0.260 Sum_probs=37.7
Q ss_pred CCCCCCcccccCCCCcchhc-cChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 009072 133 SSTQQLWAEKYKPRSLEELA-VQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL 202 (544)
Q Consensus 133 ~~~~~lW~eky~P~~~~dLv-~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~el 202 (544)
+..+..|++||+|.++++|- .+...+..+..++.. +. +.++|.||||||||+++..+++.+
T Consensus 8 ~~~~~~~~~~~~p~~~~~Ln~~Q~~av~~~~~~i~~------~~---~~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 8 HHHSSGLVPRGSHMTFDDLTEGQKNAFNIVMKAIKE------KK---HHVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp -------------CCSSCCCHHHHHHHHHHHHHHHS------SS---CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCccCCCccccCCCccccCCHHHHHHHHHHHHHHhc------CC---CEEEEEeCCCCCHHHHHHHHHHHH
Confidence 34567899999999999986 555666666666543 11 489999999999999999999876
No 94
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.52 E-value=1.2e-06 Score=90.17 Aligned_cols=207 Identities=14% Similarity=0.230 Sum_probs=120.4
Q ss_pred chhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhCCe--EEEEeCCCch--hhhhhhhcc
Q 009072 149 EELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGAR--LYEWDTPTPT--IWQEYMHNC 224 (544)
Q Consensus 149 ~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~--viei~~s~~~--~~~e~l~~~ 224 (544)
.++++......++...+..... .. ..++++|++|+||+++|+++....+.. ++.+|+.... .....+...
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a~---~~---~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~lfg~ 202 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIAK---SK---APVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESELFGH 202 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHT---SC---SCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHHHHEE
T ss_pred ccccccchHHHHHHhhhhhhhc---cc---hhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHHhcCc
Confidence 3567888888888777765432 11 469999999999999999999876533 8889887532 111111110
Q ss_pred ccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHHHHHhcCCC----------
Q 009072 225 KTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHI---------- 294 (544)
Q Consensus 225 ~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~~~~~~~~---------- 294 (544)
..|...... ..-...++.+ ...+|++||++.++.. .+..|+.+++....
T Consensus 203 ~~g~~tga~-~~~~g~~~~a---------------~~gtlfldei~~l~~~-----~Q~~Ll~~l~~~~~~~~g~~~~~~ 261 (368)
T 3dzd_A 203 EKGAFTGAL-TRKKGKLELA---------------DQGTLFLDEVGELDQR-----VQAKLLRVLETGSFTRLGGNQKIE 261 (368)
T ss_dssp CSCSSSSCC-CCEECHHHHT---------------TTSEEEEETGGGSCHH-----HHHHHHHHHHHSEECCBTCCCBEE
T ss_pred cccccCCcc-cccCChHhhc---------------CCCeEEecChhhCCHH-----HHHHHHHHHHhCCcccCCCCccee
Confidence 111000000 0000011111 1348999999998653 34456666654321
Q ss_pred -cEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCH--HHHHHHHHHHHHH----hC---CCCCHHHHHHH
Q 009072 295 -PTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITN--GSIKRTLSKICRQ----EQ---YSLSTEQIDLV 364 (544)
Q Consensus 295 -piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~--~~i~~~L~~i~~~----e~---~~i~~~~l~~I 364 (544)
.+-+|++++..... ......+ -+.++.|..+..|.++|+.. +++..++...+.+ .+ ..+++++++.|
T Consensus 262 ~~~rii~at~~~l~~-~v~~g~f--r~dL~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L 338 (368)
T 3dzd_A 262 VDIRVISATNKNLEE-EIKKGNF--REDLYYRLSVFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEETKEYL 338 (368)
T ss_dssp CCCEEEEEESSCHHH-HHHTTSS--CHHHHHHHTSEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHH
T ss_pred eeeEEEEecCCCHHH-HHHcCCc--cHHHHHHhCCeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHH
Confidence 12233333211000 0000000 02455565577788999977 6776666655543 33 35899999999
Q ss_pred HHHc-CCcHHHHHHHHHHhccC
Q 009072 365 AQAS-GGDIRQAITSLQFSSLK 385 (544)
Q Consensus 365 a~~s-~GDiR~aIn~Lq~~~~~ 385 (544)
.... .||+|...|.++.++..
T Consensus 339 ~~~~wpGNvreL~n~i~~~~~~ 360 (368)
T 3dzd_A 339 MKQEWKGNVRELKNLIERAVIL 360 (368)
T ss_dssp HTCCCTTHHHHHHHHHHHHHHT
T ss_pred HhCCCCcHHHHHHHHHHHHHHh
Confidence 9887 89999999999988764
No 95
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=98.48 E-value=4e-08 Score=107.55 Aligned_cols=28 Identities=21% Similarity=0.406 Sum_probs=25.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCeEE
Q 009072 180 VLVITGQAGVGKTATVRQIASHLGARLY 207 (544)
Q Consensus 180 ~lLL~GPpG~GKTtla~~lA~elg~~vi 207 (544)
++||+||||||||++|+++|+.++..++
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~~~r~~~ 356 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRVAPRAVY 356 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTTCSCEEC
T ss_pred ceEEECCCchHHHHHHHHHHHhCCCcee
Confidence 7999999999999999999999876543
No 96
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=98.46 E-value=5.8e-06 Score=85.68 Aligned_cols=207 Identities=14% Similarity=0.210 Sum_probs=116.7
Q ss_pred chhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhC---CeEEEEeCCCchh--hhhhhhc
Q 009072 149 EELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLG---ARLYEWDTPTPTI--WQEYMHN 223 (544)
Q Consensus 149 ~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg---~~viei~~s~~~~--~~e~l~~ 223 (544)
.++++.....+++...+..... . ...++|+|++|+||+++|+++..... .+++.++++.... ....+..
T Consensus 137 ~~~ig~s~~m~~l~~~i~~~a~---~---~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~~elfg 210 (387)
T 1ny5_A 137 EEYVFESPKMKEILEKIKKISC---A---ECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFG 210 (387)
T ss_dssp CCCCCCSHHHHHHHHHHHHHTT---C---CSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHHHHHHC
T ss_pred hhhhhccHHhhHHHHHHHHhcC---C---CCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHHHHhcC
Confidence 4567777788888887776432 1 14589999999999999999988764 6789998765321 0111111
Q ss_pred cccCcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHHHHHhcCC----------
Q 009072 224 CKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTH---------- 293 (544)
Q Consensus 224 ~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~~~~~~~---------- 293 (544)
...|...... ..-...++.+ ...+|+|||++.++.. .+..|+++++...
T Consensus 211 ~~~g~~tga~-~~~~g~~~~a---------------~~gtlfldei~~l~~~-----~q~~Ll~~l~~~~~~~~g~~~~~ 269 (387)
T 1ny5_A 211 YEKGAFTGAV-SSKEGFFELA---------------DGGTLFLDEIGELSLE-----AQAKLLRVIESGKFYRLGGRKEI 269 (387)
T ss_dssp BCTTSSTTCC-SCBCCHHHHT---------------TTSEEEEESGGGCCHH-----HHHHHHHHHHHSEECCBTCCSBE
T ss_pred CCCCCCCCcc-cccCCceeeC---------------CCcEEEEcChhhCCHH-----HHHHHHHHHhcCcEEeCCCCcee
Confidence 0111000000 0000011111 2358999999998653 3344555555421
Q ss_pred -CcEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCH--HHHHHHHHHHHH----HhCC---CCCHHHHHH
Q 009072 294 -IPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITN--GSIKRTLSKICR----QEQY---SLSTEQIDL 363 (544)
Q Consensus 294 -~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~--~~i~~~L~~i~~----~e~~---~i~~~~l~~ 363 (544)
..+-+|++++..... -.....+ -..+..|.....|.++|+.. +++..++...+. +.+. .+++++++.
T Consensus 270 ~~~~rii~at~~~l~~-~~~~g~f--r~dl~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~ 346 (387)
T 1ny5_A 270 EVNVRILAATNRNIKE-LVKEGKF--REDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQEL 346 (387)
T ss_dssp ECCCEEEEEESSCHHH-HHHTTSS--CHHHHHHHTTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHH
T ss_pred eccEEEEEeCCCCHHH-HHHcCCc--cHHHHHhhcCCeecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHHHHHH
Confidence 122344433210000 0000000 02344454566788888854 666655555443 3343 378999999
Q ss_pred HHHHc-CCcHHHHHHHHHHhccC
Q 009072 364 VAQAS-GGDIRQAITSLQFSSLK 385 (544)
Q Consensus 364 Ia~~s-~GDiR~aIn~Lq~~~~~ 385 (544)
|.... .|++|..-|.++.++..
T Consensus 347 l~~~~wpGNvreL~~~i~~~~~~ 369 (387)
T 1ny5_A 347 LLSYPWYGNVRELKNVIERAVLF 369 (387)
T ss_dssp HHHSCCTTHHHHHHHHHHHHHHH
T ss_pred HHhCCCCcHHHHHHHHHHHHHHh
Confidence 98775 79999999999988753
No 97
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.43 E-value=1.8e-06 Score=79.41 Aligned_cols=77 Identities=13% Similarity=0.171 Sum_probs=45.9
Q ss_pred CCceEEEEecCCCCCchhHHHHHHHHHHHHHhcCCCcEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCH
Q 009072 259 KSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITN 338 (544)
Q Consensus 259 ~~~~vIlIDEid~l~~~~~~~~~~~~L~~~~~~~~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~ 338 (544)
.+|.++|+||+.-+..-+ ....+.+.++++.. ...+++++.. .+....+..+..+..+.++.|.+.+.
T Consensus 98 ~~p~llilDEigp~~~ld--~~~~~~l~~~l~~~-~~~~i~~~H~---------~h~~~~~~~i~~r~~~~i~~~~~~~r 165 (178)
T 1ye8_A 98 DRRKVIIIDEIGKMELFS--KKFRDLVRQIMHDP-NVNVVATIPI---------RDVHPLVKEIRRLPGAVLIELTPENR 165 (178)
T ss_dssp CTTCEEEECCCSTTGGGC--HHHHHHHHHHHTCT-TSEEEEECCS---------SCCSHHHHHHHTCTTCEEEECCTTTT
T ss_pred cCCCEEEEeCCCCcccCC--HHHHHHHHHHHhcC-CCeEEEEEcc---------CCCchHHHHHHhcCCcEEEEecCcCH
Confidence 347899999985443322 12334566666653 3335555421 11234456666666688999999887
Q ss_pred HHHHHHHHH
Q 009072 339 GSIKRTLSK 347 (544)
Q Consensus 339 ~~i~~~L~~ 347 (544)
+++...|.+
T Consensus 166 ~~~~~~l~~ 174 (178)
T 1ye8_A 166 DVILEDILS 174 (178)
T ss_dssp TTHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777665543
No 98
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.16 E-value=2.3e-05 Score=73.81 Aligned_cols=116 Identities=19% Similarity=0.229 Sum_probs=65.6
Q ss_pred CCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCC--ch-hhhhhhhccccCc-----------ccccchHHHHH
Q 009072 174 DKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPT--PT-IWQEYMHNCKTGL-----------EYTSKLDEFEN 239 (544)
Q Consensus 174 g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~--~~-~~~e~l~~~~~g~-----------~~~s~~~~~~~ 239 (544)
|-++...++|+||||+||||++..+|...+..++.+.... .. .+...... .+. ...+.......
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEGGFSPERLVQMAET--RGLNPEEALSRFILFTPSDFKEQRR 93 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSCCCCHHHHHHHHHT--TTCCHHHHHHHEEEECCTTTSHHHH
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCCCCCHHHHHHHHHh--cCCChHHHhhcEEEEecCCHHHHHH
Confidence 4455578999999999999999999986677887777654 21 11111110 010 00011122233
Q ss_pred HHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCch--------hHHHHHHHHHHHHHhcCCCcEEEEE
Q 009072 240 FVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGR--------TAFERLRQCLLLLVRSTHIPTAVVL 300 (544)
Q Consensus 240 ~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~--------~~~~~~~~~L~~~~~~~~~piIiI~ 300 (544)
.+..+.... . ..+.+|||||+..+... ..+..+.+.|..+......++|++.
T Consensus 94 ~~~~~~~l~--------~-~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~ 153 (220)
T 2cvh_A 94 VIGSLKKTV--------D-SNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVIN 153 (220)
T ss_dssp HHHHHHHHC--------C-TTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred HHHHHHHHh--------h-cCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 444443332 0 14789999999876321 1233444556666665555555443
No 99
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.13 E-value=4.7e-06 Score=83.24 Aligned_cols=33 Identities=24% Similarity=0.596 Sum_probs=26.7
Q ss_pred CCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeE
Q 009072 174 DKFSTNVLVITGQAGVGKTATVRQIASHLGARL 206 (544)
Q Consensus 174 g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~v 206 (544)
|.++.+.++|+||||||||+++..+|.+.|..+
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~~G~~V 151 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGEALGGKD 151 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHHHHHTTS
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCE
Confidence 444556789999999999999999998765543
No 100
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=98.12 E-value=4.9e-05 Score=82.99 Aligned_cols=51 Identities=20% Similarity=0.307 Sum_probs=41.4
Q ss_pred CCCCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHH
Q 009072 144 KPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIAS 200 (544)
Q Consensus 144 ~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~ 200 (544)
.|.....++|++..+++|..++... .+ ..+.++|+||+|+||||+|..+++
T Consensus 119 ~P~~~~~~vGR~~~l~~L~~~L~~~----~~--~~~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 119 VPQRPVVFVTRKKLVNAIQQKLSKL----KG--EPGWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHTTS----TT--SCEEEEEECCTTSSHHHHHHHHHC
T ss_pred CCCCCCeecccHHHHHHHHHHHhcc----cC--CCceEEEEcCCCCCHHHHHHHHHh
Confidence 3666678999999999999988642 12 227899999999999999999874
No 101
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=97.99 E-value=2.2e-05 Score=77.91 Aligned_cols=160 Identities=13% Similarity=0.170 Sum_probs=86.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCCchhhhhhhhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCC
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGES 258 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~~~~~~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~ 258 (544)
+.++|+||+|+|||+++..+|+.++..++..+.-. . ..++......-. .++....
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~q---v-------Y~~~~igTakp~----~~E~~~v----------- 65 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKILPVELISVDSAL---I-------YKGMDIGTAKPN----AEELLAA----------- 65 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTTT---T-------BTTCCTTTTCCC----HHHHHHS-----------
T ss_pred cEEEEECCCccCHHHHHHHHHHhCCCcEEeccccc---c-------cccccccCCCCC----HHHHcCC-----------
Confidence 68899999999999999999999987766543321 1 112211100000 0011100
Q ss_pred CCceEEEEecC--CCCCchhHHHH-HHHHHHHHHhcCCCcEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecC
Q 009072 259 KSSAILLIDDL--PVTNGRTAFER-LRQCLLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNP 335 (544)
Q Consensus 259 ~~~~vIlIDEi--d~l~~~~~~~~-~~~~L~~~~~~~~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p 335 (544)
| --+||.. +.......|.+ ....+.++...++.|+ +++.++ .| +++++.- +...|
T Consensus 66 --~-hhlid~~~~~e~~s~~~f~~~a~~~i~~i~~~g~~pi--lVGGTg------lY------i~all~g-----l~~~p 123 (316)
T 3foz_A 66 --P-HRLLDIRDPSQAYSAADFRRDALAEMADITAAGRIPL--LVGGTM------LY------FKALLEG-----LSPLP 123 (316)
T ss_dssp --C-EETSSCBCTTSCCCHHHHHHHHHHHHHHHHHTTCEEE--EEESCH------HH------HHHHHSC-----CCCCC
T ss_pred --C-EEEeccCCccccccHHHHHHHHHHHHHHHHhCCCcEE--EEcCcH------HH------HHHHHcC-----cCCCC
Confidence 1 2344433 33333333333 3355666677776654 444432 11 3555432 23335
Q ss_pred CCHHHHHHHHHHHHHHhCC--------CCCHHHHHHHHHHcCCcHHHHHHHHHHhccCCCC
Q 009072 336 ITNGSIKRTLSKICRQEQY--------SLSTEQIDLVAQASGGDIRQAITSLQFSSLKQDP 388 (544)
Q Consensus 336 ~s~~~i~~~L~~i~~~e~~--------~i~~~~l~~Ia~~s~GDiR~aIn~Lq~~~~~~~~ 388 (544)
..+.+++..+...+..+|. .++++.... ..-+|.|+.+..|+.+...+.+
T Consensus 124 ~~~~~~R~~l~~~~~~~g~~~l~~~L~~~DP~~A~r---i~pnd~~Ri~RALEV~~~TG~~ 181 (316)
T 3foz_A 124 SADPEVRARIEQQAAEQGWESLHRQLQEVDPVAAAR---IHPNDPQRLSRALEVFFISGKT 181 (316)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH---SCTTCHHHHHHHHHHHHHHSSC
T ss_pred CCCHHHHHHHHHHHHhcCHHHHHHHHHHhCHHHHhh---CCCccHHHHHHHHHHHHHHCCC
Confidence 5566788888777766552 123332222 2468999999999988765543
No 102
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=97.96 E-value=0.00014 Score=90.92 Aligned_cols=129 Identities=16% Similarity=0.184 Sum_probs=78.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCCchhhhhhhhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCC
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGES 258 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~~~~~~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~ 258 (544)
...++.||||||||++++.+|+.+|..++.+|+++. +.+ ..+..++..+...
T Consensus 646 ~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~-------------ld~----~~lg~~~~g~~~~----------- 697 (2695)
T 4akg_A 646 YGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDS-------------FDY----QVLSRLLVGITQI----------- 697 (2695)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSS-------------CCH----HHHHHHHHHHHHH-----------
T ss_pred CCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCC-------------CCh----hHhhHHHHHHHhc-----------
Confidence 568899999999999999999999999999998653 222 3344555554433
Q ss_pred CCceEEEEecCCCCCch--hHHHHHHHHHHHHHhcCC--------------CcEEEEEccCCCCCCCCccccchHHHHHH
Q 009072 259 KSSAILLIDDLPVTNGR--TAFERLRQCLLLLVRSTH--------------IPTAVVLTECGKADSVDSTAQSFEELQSI 322 (544)
Q Consensus 259 ~~~~vIlIDEid~l~~~--~~~~~~~~~L~~~~~~~~--------------~piIiI~t~~~~~~~~d~~~~~l~~l~~l 322 (544)
...+++||++.+... +.+......+...+.... ...||++.+. .|..+.+...++
T Consensus 698 --Gaw~~~DE~nr~~~evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NP-------gy~g~~eLP~~L 768 (2695)
T 4akg_A 698 --GAWGCFDEFNRLDEKVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNP-------GYNGRSELPENL 768 (2695)
T ss_dssp --TCEEEEETTTSSCHHHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECC-------CSSSSCCCCHHH
T ss_pred --CCEeeehhhhhcChHHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCC-------CccCcccccHHH
Confidence 358999999998653 111111122223222111 1234444432 122222222333
Q ss_pred HhhcCceeEEecCCCHHHHHHHHH
Q 009072 323 LVDAGARKVALNPITNGSIKRTLS 346 (544)
Q Consensus 323 l~r~~~~~I~f~p~s~~~i~~~L~ 346 (544)
.. ++..|.+..|+.+.+.+++.
T Consensus 769 k~--~Fr~v~m~~Pd~~~i~ei~l 790 (2695)
T 4akg_A 769 KK--SFREFSMKSPQSGTIAEMIL 790 (2695)
T ss_dssp HT--TEEEEECCCCCHHHHHHHHH
T ss_pred Hh--heEEEEeeCCCHHHHHHHHH
Confidence 33 36789999999888887753
No 103
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.93 E-value=4.2e-05 Score=96.17 Aligned_cols=175 Identities=11% Similarity=0.130 Sum_probs=94.8
Q ss_pred CcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHH-hCCeEEEEeCCCchhhhhhhhccc
Q 009072 147 SLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASH-LGARLYEWDTPTPTIWQEYMHNCK 225 (544)
Q Consensus 147 ~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~e-lg~~viei~~s~~~~~~e~l~~~~ 225 (544)
.+.+++++.--..+...++..+... + +++||+||||||||+++..+... .++.++.++.+....
T Consensus 1279 ~~~~ilVPT~DTvR~~~ll~~ll~~--~----~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tt--------- 1343 (3245)
T 3vkg_A 1279 ASPDVVIPTVDTTRHVDVLHAWLSE--H----RPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATT--------- 1343 (3245)
T ss_dssp TCTTCCCCCHHHHHHHHHHHHHHHT--T----CCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCC---------
T ss_pred CcccceecchHHHHHHHHHHHHHHC--C----CcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCC---------
Confidence 3556777665555555666666542 2 57999999999999887554444 466777777654211
Q ss_pred cCcccccchHHHHHHHHHHHhhcCCC--CCCCC--CCCCceEEEEecCCCCCchh-HHHHHHHHHHHHHhcCC-------
Q 009072 226 TGLEYTSKLDEFENFVERIRRYGSTS--PSIPG--ESKSSAILLIDDLPVTNGRT-AFERLRQCLLLLVRSTH------- 293 (544)
Q Consensus 226 ~g~~~~s~~~~~~~~l~~~~~~~~l~--~~~~~--~~~~~~vIlIDEid~l~~~~-~~~~~~~~L~~~~~~~~------- 293 (544)
...+...++....+.... ....+ ..+++.|++|||++.-.... ......+.|+++++.+.
T Consensus 1344 --------a~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~VlFiDDiNmp~~D~yGtQ~~ielLrqlld~~g~yd~~~~ 1415 (3245)
T 3vkg_A 1344 --------PELLLKTFDHHCEYKRTPSGETVLRPTQLGKWLVVFCDEINLPSTDKYGTQRVITFIRQMVEKGGFWRTSDH 1415 (3245)
T ss_dssp --------HHHHHHHHHHHEEEEECTTSCEEEEESSTTCEEEEEETTTTCCCCCTTSCCHHHHHHHHHHHHSEEEETTTT
T ss_pred --------HHHHHHHHhhcceEEeccCCCcccCCCcCCceEEEEecccCCCCccccccccHHHHHHHHHHcCCeEECCCC
Confidence 123333333211111100 00000 12457899999997532110 01124456777766421
Q ss_pred -----CcEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHHH
Q 009072 294 -----IPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICRQ 351 (544)
Q Consensus 294 -----~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~~ 351 (544)
..+.+|++-..++.. .+...-+.+++| +.++.++.|+.+.+..+...++..
T Consensus 1416 ~~~~i~d~~~vaamnPp~~g-----Gr~~l~~Rf~r~--F~vi~i~~ps~esL~~If~til~~ 1471 (3245)
T 3vkg_A 1416 TWIKLDKIQFVGACNPPTDA-----GRVQLTHRFLRH--APILLVDFPSTSSLTQIYGTFNRA 1471 (3245)
T ss_dssp EEEEESSEEEEEEECCTTST-----TCCCCCHHHHTT--CCEEECCCCCHHHHHHHHHHHHHH
T ss_pred eEEEecCeEEEEEcCCCCCC-----CCccCCHHHHhh--ceEEEeCCCCHHHHHHHHHHHHHH
Confidence 123444443222100 011111344444 778999999999999998877653
No 104
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.92 E-value=7.2e-05 Score=70.81 Aligned_cols=39 Identities=21% Similarity=0.158 Sum_probs=30.0
Q ss_pred CCCccEEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeCCC
Q 009072 175 KFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTPT 213 (544)
Q Consensus 175 ~~~~~~lLL~GPpG~GKTtla~~lA~el---g~~viei~~s~ 213 (544)
-++...++|.||||+||||+++.+|..+ +..++.+....
T Consensus 20 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~ 61 (235)
T 2w0m_A 20 IPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE 61 (235)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS
T ss_pred CcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc
Confidence 3444789999999999999999999654 56666665543
No 105
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.91 E-value=1.6e-05 Score=79.67 Aligned_cols=161 Identities=15% Similarity=0.187 Sum_probs=53.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCCchhhhhhhhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCC
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGES 258 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~~~~~~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~ 258 (544)
+.++|+||+|+||||+++.||++++..++..+.-.. ..++........ .++...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~qv----------y~~~~igTakp~----~~e~~g------------ 59 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPCELISVDSALI----------YRGMDIGTAKPS----RELLAR------------ 59 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTTTT----------BTTCCTTTTCCC----HHHHHH------------
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCcEEeccchhh----------hcCCCcccCCCC----HHHHcC------------
Confidence 589999999999999999999999988887654321 112211100000 000011
Q ss_pred CCceEEEEecCCCC--CchhHHHH-HHHHHHHHHhcCCCcEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecC
Q 009072 259 KSSAILLIDDLPVT--NGRTAFER-LRQCLLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNP 335 (544)
Q Consensus 259 ~~~~vIlIDEid~l--~~~~~~~~-~~~~L~~~~~~~~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p 335 (544)
-| -.++|..+.. .+...|.. ....+.++...++. +++++.+. .-+++++.. . ..+ |
T Consensus 60 -vp-h~lid~~~~~~~~~~~~F~~~a~~~i~~i~~~g~~--~IlvGGt~------------~y~~all~g--~--~~~-p 118 (323)
T 3crm_A 60 -YP-HRLIDIRDPAESYSAAEFRADALAAMAKATARGRI--PLLVGGTM------------LYYKALLEG--L--ADM-P 118 (323)
T ss_dssp -SC-EETSSCBCTTSCCCHHHHHHHHHHHHHHHHHTTCE--EEEEESCH------------HHHHHHHCC--C-------
T ss_pred -CC-EEEeeccCcccccCHHHHHHHHHHHHHHHHHcCCe--EEEECCch------------hhHHHHHcC--C--CCC-C
Confidence 12 3555555432 22233333 23455566665543 44454421 113454432 1 123 3
Q ss_pred CCHHHHHHHHHHHHHHhCC--------CCCHHHHHHHHHHcCCcHHHHHHHHHHhccCCCCC
Q 009072 336 ITNGSIKRTLSKICRQEQY--------SLSTEQIDLVAQASGGDIRQAITSLQFSSLKQDPM 389 (544)
Q Consensus 336 ~s~~~i~~~L~~i~~~e~~--------~i~~~~l~~Ia~~s~GDiR~aIn~Lq~~~~~~~~~ 389 (544)
....+++..+...+..+|. .+++.....| .-+|.|+.+..|+.+...+.+.
T Consensus 119 ~~~~~~R~~l~~~~~~~g~~~l~~~L~~~Dp~~a~~i---~~nd~~Ri~RALEv~~~tG~~~ 177 (323)
T 3crm_A 119 GADPEVRAAIEAEAQAEGWEALHRQLAEVDPESAARI---HPNDPQRLMRALEVYRLGGVSM 177 (323)
T ss_dssp --------------------------------------------------------------
T ss_pred CCCHHHHHHHHHHHHHcCHHHHHHHHHHhCHHHHhhc---CCCCHHHHHHHHHHHHHHCCCH
Confidence 3455677777776665553 2455444444 4579999999999987655443
No 106
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.88 E-value=4.1e-05 Score=71.01 Aligned_cols=78 Identities=5% Similarity=0.021 Sum_probs=45.0
Q ss_pred CCceEEEEecCCCCCchhHHHHHHHHHHHHHhcCCCcEEE-EEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCC
Q 009072 259 KSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPTAV-VLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPIT 337 (544)
Q Consensus 259 ~~~~vIlIDEid~l~~~~~~~~~~~~L~~~~~~~~~piIi-I~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s 337 (544)
..+.|+|+||+..+...+. .+++.|.++++.. .|+|+ +++-.|.. .+..+..+..+..+.++.+.+-+
T Consensus 104 ~~~dvlilDE~g~~~~~~~--~~~~~l~~~l~~~-~~~ilgti~vsh~~--------~~~~vd~i~~~~~~~i~~~~~~n 172 (189)
T 2i3b_A 104 PGQRVCVIDEIGKMELFSQ--LFIQAVRQTLSTP-GTIILGTIPVPKGK--------PLALVEEIRNRKDVKVFNVTKEN 172 (189)
T ss_dssp SCCCCEEECCCSTTTTTCS--HHHHHHHHHHHCS-SCCEEEECCCCCSS--------CCTTHHHHHTTCCSEEEECCSSS
T ss_pred cCCCEEEEeCCCccccccH--HHHHHHHHHHhCC-CcEEEEEeecCCCC--------chHHHHHHeecCCcEEEEeChHh
Confidence 4578999999977643221 3456677777754 34443 12321211 11223445555557889888887
Q ss_pred HHHHHHHHHH
Q 009072 338 NGSIKRTLSK 347 (544)
Q Consensus 338 ~~~i~~~L~~ 347 (544)
.+.+...|..
T Consensus 173 r~~~~~~i~~ 182 (189)
T 2i3b_A 173 RNHLLPDIVT 182 (189)
T ss_dssp GGGHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7766665543
No 107
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=97.86 E-value=1.8e-05 Score=78.76 Aligned_cols=160 Identities=16% Similarity=0.244 Sum_probs=87.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCCchhhhhhhhccccCccccc-chHHHHHHHHHHHhhcCCCCCCCCC
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIWQEYMHNCKTGLEYTS-KLDEFENFVERIRRYGSTSPSIPGE 257 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~~~~~~e~l~~~~~g~~~~s-~~~~~~~~l~~~~~~~~l~~~~~~~ 257 (544)
+.++|.||+|+|||+++..||+.++..++.. |....+ .++.... ... .++..
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~~~iis~---Ds~QvY-------r~~~igTakp~-----~~E~~------------ 56 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLNGEVISG---DSMQVY-------RGMDIGTAKIT-----AEEMD------------ 56 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTTEEEEEC---CGGGGB-------TTCCTTTTCCC-----HHHHT------------
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCccceeec---Ccccce-------eeeeecCCCCC-----HHHHc------------
Confidence 6789999999999999999999998765543 322111 1221110 000 01110
Q ss_pred CCCceEEEEecCC--CCCchhHHHH-HHHHHHHHHhcCCCcEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEec
Q 009072 258 SKSSAILLIDDLP--VTNGRTAFER-LRQCLLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALN 334 (544)
Q Consensus 258 ~~~~~vIlIDEid--~l~~~~~~~~-~~~~L~~~~~~~~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~ 334 (544)
+-| --+||..+ .....+.|.+ ....+.++...++.|+ +++.++ .| +++++.- +.|.
T Consensus 57 -gvp-hhlid~~~~~e~~s~~~F~~~a~~~i~~i~~~gk~pI--lVGGTg------lY------i~aLl~g-----~~~~ 115 (322)
T 3exa_A 57 -GVP-HHLIDIKDPSESFSVADFQDLATPLITEIHERGRLPF--LVGGTG------LY------VNAVIHQ-----FNLG 115 (322)
T ss_dssp -TCC-EESSSCBCTTSCCCHHHHHHHHHHHHHHHHHTTCEEE--EESCCH------HH------HHHHHHT-----CCCC
T ss_pred -CCC-EEEeccCChhhhccHHHHHHHHHHHHHHHHhCCCcEE--EEcCcH------HH------HHHHHcC-----CcCC
Confidence 112 24445443 3333233333 3355666666666544 455432 11 3555442 3566
Q ss_pred CC-CHHHHHHHHHHHHHHhCC--------CCCHHHHHHHHHHcCCcHHHHHHHHHHhccCCCCC
Q 009072 335 PI-TNGSIKRTLSKICRQEQY--------SLSTEQIDLVAQASGGDIRQAITSLQFSSLKQDPM 389 (544)
Q Consensus 335 p~-s~~~i~~~L~~i~~~e~~--------~i~~~~l~~Ia~~s~GDiR~aIn~Lq~~~~~~~~~ 389 (544)
|. .+.+++..|...+..+|. .++++....| .-+|.|+.+..|+.+...+.+.
T Consensus 116 ~~~~~~~~R~~l~~~~~~~g~~~L~~~L~~~DP~~A~~i---~pnd~~Ri~RALEV~~~TG~~~ 176 (322)
T 3exa_A 116 DIRADEDYRHELEAFVNSYGVQALHDKLSKIDPKAAAAI---HPNNYRRVIRALEIIKLTGKTV 176 (322)
T ss_dssp CCBCCHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHTTS---CTTCHHHHHHHHHHHHHTC---
T ss_pred CCCCCHHHHHHHHHHHHhcCHHHHHHHHHhhCHHHHhhc---CcccHHHHHHHHHHHHHHCCCH
Confidence 65 456788888887776652 2333322221 4589999999999987655443
No 108
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=97.84 E-value=0.00016 Score=78.38 Aligned_cols=44 Identities=25% Similarity=0.363 Sum_probs=36.8
Q ss_pred ccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHH
Q 009072 152 AVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIAS 200 (544)
Q Consensus 152 v~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~ 200 (544)
+|++..+++|.+||.... ....+.+.|+|++|+||||+|+.+++
T Consensus 131 ~GR~~~~~~l~~~L~~~~-----~~~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMC-----DLDSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp CCCHHHHHHHHHHHHHHT-----TSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhccc-----CCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 499999999999996531 11227899999999999999999997
No 109
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.82 E-value=4.8e-05 Score=91.14 Aligned_cols=88 Identities=15% Similarity=0.116 Sum_probs=51.5
Q ss_pred CCCccEEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeCCC--chhhhhhhhccccCccccc----chHHHHHHHHHHH
Q 009072 175 KFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTPT--PTIWQEYMHNCKTGLEYTS----KLDEFENFVERIR 245 (544)
Q Consensus 175 ~~~~~~lLL~GPpG~GKTtla~~lA~el---g~~viei~~s~--~~~~~e~l~~~~~g~~~~s----~~~~~~~~l~~~~ 245 (544)
.+..+.+|+|||||||||++|+++|.+. |-+.+.|.... +..+.+.+.- .......+ ....++.+...++
T Consensus 1079 ~p~g~~~l~~G~~g~GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~-d~~~~~~~~~~~~e~~l~~~~~~ar 1157 (1706)
T 3cmw_A 1079 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGV-DIDNLLCSQPDTGEQALEICDALAR 1157 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTC-CGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEcCCCCChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCC-CHHHHhhccccchHHHHHHHHHHHH
Confidence 3445679999999999999999999876 44444454433 2222111110 00001112 3455655555554
Q ss_pred hhcCCCCCCCCCCCCceEEEEecCCCCCch
Q 009072 246 RYGSTSPSIPGESKSSAILLIDDLPVTNGR 275 (544)
Q Consensus 246 ~~~~l~~~~~~~~~~~~vIlIDEid~l~~~ 275 (544)
.. .+++|++||++.+...
T Consensus 1158 ~~------------~~~~i~~d~~~al~~~ 1175 (1706)
T 3cmw_A 1158 SG------------AVDVIVVDSVAALTPK 1175 (1706)
T ss_dssp HT------------CCSEEEESCGGGCCCH
T ss_pred hc------------CCeEEEeCchHhcCcc
Confidence 33 3789999999866443
No 110
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.81 E-value=3.2e-05 Score=71.44 Aligned_cols=32 Identities=22% Similarity=0.279 Sum_probs=25.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEe
Q 009072 179 NVLVITGQAGVGKTATVRQIASHL---GARLYEWD 210 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~el---g~~viei~ 210 (544)
...+++||+|+||||++..++..+ |..++-+.
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~ 38 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFK 38 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 689999999999999996666553 66665554
No 111
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.78 E-value=0.00024 Score=72.35 Aligned_cols=40 Identities=20% Similarity=0.140 Sum_probs=32.5
Q ss_pred CCCCccEEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeCCC
Q 009072 174 DKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTPT 213 (544)
Q Consensus 174 g~~~~~~lLL~GPpG~GKTtla~~lA~el---g~~viei~~s~ 213 (544)
|.++...++|+||||+||||++..+|..+ +..++.+....
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~ 99 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEH 99 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccc
Confidence 55566799999999999999999998874 66777776654
No 112
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.76 E-value=0.00021 Score=84.48 Aligned_cols=189 Identities=13% Similarity=0.076 Sum_probs=99.3
Q ss_pred CCCCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHh-------CCeEEEEeCCCc--
Q 009072 144 KPRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL-------GARLYEWDTPTP-- 214 (544)
Q Consensus 144 ~P~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~el-------g~~viei~~s~~-- 214 (544)
.|.....++|++..+++|.++|.... + ..+.+.|+|++|+||||+|..+++.. ...++-++.+..
T Consensus 119 ~p~~~~~~vgR~~~~~~l~~~l~~~~----~--~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 192 (1249)
T 3sfz_A 119 VPQRPVIFVTRKKLVHAIQQKLWKLN----G--EPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDK 192 (1249)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHTTT----T--SCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCH
T ss_pred CCCCCceeccHHHHHHHHHHHHhhcc----C--CCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCc
Confidence 46667789999999999999986421 2 22789999999999999999887652 112333333321
Q ss_pred hh----hhhhhhcccc-CcccccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHHHHH
Q 009072 215 TI----WQEYMHNCKT-GLEYTSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLV 289 (544)
Q Consensus 215 ~~----~~e~l~~~~~-g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~~~ 289 (544)
.. .......... +..............+....+.. ...++.+||||+++.. . .+..+
T Consensus 193 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~-------~~~~~~LlvlDd~~~~------~----~~~~~- 254 (1249)
T 3sfz_A 193 SGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLML-------RKHPRSLLILDDVWDP------W----VLKAF- 254 (1249)
T ss_dssp HHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTS-------SSSCSCEEEEESCCCH------H----HHTTT-
T ss_pred hHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHh-------ccCCCEEEEEecCCCH------H----HHHhh-
Confidence 11 1111110000 00000001112223333332210 1134789999999862 1 12221
Q ss_pred hcCCCcEEEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecC-CCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHc
Q 009072 290 RSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNP-ITNGSIKRTLSKICRQEQYSLSTEQIDLVAQAS 368 (544)
Q Consensus 290 ~~~~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p-~s~~~i~~~L~~i~~~e~~~i~~~~l~~Ia~~s 368 (544)
...-.|+|+| ....- .. ... .....+...+ ++.++-.+++...+.... .-.++....|++.+
T Consensus 255 --~~~~~ilvTt-R~~~~-----~~------~~~--~~~~~~~~~~~l~~~~a~~l~~~~~~~~~-~~~~~~~~~i~~~~ 317 (1249)
T 3sfz_A 255 --DNQCQILLTT-RDKSV-----TD------SVM--GPKHVVPVESGLGREKGLEILSLFVNMKK-EDLPAEAHSIIKEC 317 (1249)
T ss_dssp --CSSCEEEEEE-SSTTT-----TT------TCC--SCBCCEECCSSCCHHHHHHHHHHHHTSCS-TTCCTHHHHHHHHT
T ss_pred --cCCCEEEEEc-CCHHH-----HH------hhc--CCceEEEecCCCCHHHHHHHHHHhhCCCh-hhCcHHHHHHHHHh
Confidence 2222444443 22100 00 000 0134677775 899888888887653222 22235678899999
Q ss_pred CCcHH
Q 009072 369 GGDIR 373 (544)
Q Consensus 369 ~GDiR 373 (544)
+|-.=
T Consensus 318 ~glPL 322 (1249)
T 3sfz_A 318 KGSPL 322 (1249)
T ss_dssp TTCHH
T ss_pred CCCHH
Confidence 88643
No 113
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.72 E-value=0.00011 Score=70.14 Aligned_cols=40 Identities=20% Similarity=0.191 Sum_probs=31.8
Q ss_pred CCCCccEEEEEcCCCCcHHHHHHHHHHH--h-------CCeEEEEeCCC
Q 009072 174 DKFSTNVLVITGQAGVGKTATVRQIASH--L-------GARLYEWDTPT 213 (544)
Q Consensus 174 g~~~~~~lLL~GPpG~GKTtla~~lA~e--l-------g~~viei~~s~ 213 (544)
|.++...++|+||||+||||+++.+|.. + +..++.+....
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 4455579999999999999999999985 3 45677777655
No 114
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.69 E-value=0.00016 Score=68.74 Aligned_cols=34 Identities=24% Similarity=0.245 Sum_probs=27.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeCC
Q 009072 179 NVLVITGQAGVGKTATVRQIASHL---GARLYEWDTP 212 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~el---g~~viei~~s 212 (544)
...+++||+|+||||++..++..+ |..++-+...
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~ 49 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPK 49 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEec
Confidence 689999999999999998887765 6677666533
No 115
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.60 E-value=4.8e-05 Score=69.74 Aligned_cols=31 Identities=29% Similarity=0.378 Sum_probs=28.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLGARLYEW 209 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg~~viei 209 (544)
+.++|+|||||||||+++.||+.+|+.++..
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~l~~~~i~~ 36 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKLTKRILYDS 36 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 6899999999999999999999999988753
No 116
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.57 E-value=0.00044 Score=70.37 Aligned_cols=40 Identities=20% Similarity=0.151 Sum_probs=31.4
Q ss_pred CCCCccEEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeCCC
Q 009072 174 DKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTPT 213 (544)
Q Consensus 174 g~~~~~~lLL~GPpG~GKTtla~~lA~el---g~~viei~~s~ 213 (544)
|.++...++|+||||+||||++..+|..+ |..++.+....
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~ 99 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEH 99 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 55566899999999999999999998764 56666666543
No 117
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.57 E-value=6e-05 Score=68.53 Aligned_cols=31 Identities=23% Similarity=0.457 Sum_probs=28.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLGARLYEW 209 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg~~viei 209 (544)
..++|+||||+||||+++.|++.++..++.+
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~~~~~~~ 34 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLPEPWLAF 34 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSSCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCeEEe
Confidence 6899999999999999999999998876654
No 118
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.56 E-value=0.00076 Score=69.00 Aligned_cols=40 Identities=20% Similarity=0.129 Sum_probs=32.0
Q ss_pred CCCCccEEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeCCC
Q 009072 174 DKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTPT 213 (544)
Q Consensus 174 g~~~~~~lLL~GPpG~GKTtla~~lA~el---g~~viei~~s~ 213 (544)
|.++...++|+||||+|||+++..+|.++ |..++.+....
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~ 112 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEH 112 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 55566799999999999999999888764 66777776654
No 119
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.54 E-value=6.5e-05 Score=69.15 Aligned_cols=31 Identities=26% Similarity=0.474 Sum_probs=28.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhCCeEEE
Q 009072 178 TNVLVITGQAGVGKTATVRQIASHLGARLYE 208 (544)
Q Consensus 178 ~~~lLL~GPpG~GKTtla~~lA~elg~~vie 208 (544)
+..++|.|+||+||||+++.|++.+|+.++.
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~ 35 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGLRLPLLS 35 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcCCeEec
Confidence 3689999999999999999999999988765
No 120
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.52 E-value=0.00058 Score=69.66 Aligned_cols=40 Identities=20% Similarity=0.148 Sum_probs=32.2
Q ss_pred CCCCccEEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeCCC
Q 009072 174 DKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTPT 213 (544)
Q Consensus 174 g~~~~~~lLL~GPpG~GKTtla~~lA~el---g~~viei~~s~ 213 (544)
|.++...++|+||||+||||++..+|.++ |..++.+....
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~ 101 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 101 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 55566899999999999999999998764 66777777643
No 121
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.51 E-value=0.00073 Score=66.85 Aligned_cols=39 Identities=26% Similarity=0.290 Sum_probs=30.0
Q ss_pred CCCCccEEEEEcCCCCcHHHHHHHHHHHh----CCeEEEEeCC
Q 009072 174 DKFSTNVLVITGQAGVGKTATVRQIASHL----GARLYEWDTP 212 (544)
Q Consensus 174 g~~~~~~lLL~GPpG~GKTtla~~lA~el----g~~viei~~s 212 (544)
+..+...++|.||||+||||+++.+|..+ |..++.+...
T Consensus 31 ~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e 73 (296)
T 1cr0_A 31 GARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE 73 (296)
T ss_dssp SBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESS
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCc
Confidence 44455789999999999999999998875 5466655543
No 122
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.50 E-value=7.3e-05 Score=67.33 Aligned_cols=31 Identities=10% Similarity=0.213 Sum_probs=27.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLGARLYEW 209 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg~~viei 209 (544)
..++|.||||+||||+++.|++.+++.++..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 32 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELKYPIIKG 32 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHCCCEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeeecC
Confidence 4689999999999999999999999887643
No 123
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.50 E-value=0.00022 Score=71.91 Aligned_cols=40 Identities=20% Similarity=0.228 Sum_probs=32.9
Q ss_pred CCCCccEEEEEcCCCCcHHHHHHHHHHHh---------CCeEEEEeCCC
Q 009072 174 DKFSTNVLVITGQAGVGKTATVRQIASHL---------GARLYEWDTPT 213 (544)
Q Consensus 174 g~~~~~~lLL~GPpG~GKTtla~~lA~el---------g~~viei~~s~ 213 (544)
|.++...++|+||||+|||+++..+|... +..++.+....
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG 151 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 45556799999999999999999999875 56777777665
No 124
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.49 E-value=8e-05 Score=69.35 Aligned_cols=31 Identities=26% Similarity=0.393 Sum_probs=28.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLGARLYEW 209 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg~~viei 209 (544)
+.++|.|||||||||+++.||+.+|+.++..
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~ 56 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFARKLNVPFIDL 56 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence 6899999999999999999999999988753
No 125
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.49 E-value=0.0003 Score=71.45 Aligned_cols=40 Identities=20% Similarity=0.184 Sum_probs=32.4
Q ss_pred CCCCccEEEEEcCCCCcHHHHHHHHHHHh---------CCeEEEEeCCC
Q 009072 174 DKFSTNVLVITGQAGVGKTATVRQIASHL---------GARLYEWDTPT 213 (544)
Q Consensus 174 g~~~~~~lLL~GPpG~GKTtla~~lA~el---------g~~viei~~s~ 213 (544)
|.++...++|+||||+|||+++..+|... +..++.+....
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 55566789999999999999999999872 56777777655
No 126
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.47 E-value=0.0015 Score=64.87 Aligned_cols=39 Identities=18% Similarity=0.119 Sum_probs=29.8
Q ss_pred CCCCccEEEEEcCCCCcHHHHHHHHHHHh-----CCeEEEEeCCC
Q 009072 174 DKFSTNVLVITGQAGVGKTATVRQIASHL-----GARLYEWDTPT 213 (544)
Q Consensus 174 g~~~~~~lLL~GPpG~GKTtla~~lA~el-----g~~viei~~s~ 213 (544)
|-++. .++|+||||+||||++..++.+. |..++.+.+..
T Consensus 25 Gl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~ 68 (333)
T 3io5_A 25 GMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEF 68 (333)
T ss_dssp CBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSC
T ss_pred CCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccc
Confidence 55554 89999999999999987776553 56777777654
No 127
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.45 E-value=0.0011 Score=63.16 Aligned_cols=40 Identities=23% Similarity=0.174 Sum_probs=30.6
Q ss_pred CCCCccEEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeCCC
Q 009072 174 DKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTPT 213 (544)
Q Consensus 174 g~~~~~~lLL~GPpG~GKTtla~~lA~el---g~~viei~~s~ 213 (544)
|-++...++|+||||+||||++..+|... +..++.+....
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE 61 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC
Confidence 44555789999999999999988877653 66777666554
No 128
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.45 E-value=0.0002 Score=70.83 Aligned_cols=56 Identities=21% Similarity=0.246 Sum_probs=36.0
Q ss_pred hHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEe
Q 009072 155 RKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWD 210 (544)
Q Consensus 155 ~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~ 210 (544)
++....+...+...+........+..++|+||||+||||+++.|+++++...+.++
T Consensus 10 ~~~~~~~~~~~~~~l~~~~~~~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is 65 (287)
T 1gvn_B 10 KQFENRLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVID 65 (287)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEEC
T ss_pred HHHHHHHHHHHHHHhccccCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEe
Confidence 33444455555554432212223378999999999999999999999843334444
No 129
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.45 E-value=0.00064 Score=69.21 Aligned_cols=40 Identities=20% Similarity=0.225 Sum_probs=32.1
Q ss_pred CCCCccEEEEEcCCCCcHHHHHHHHHHHh---------CCeEEEEeCCC
Q 009072 174 DKFSTNVLVITGQAGVGKTATVRQIASHL---------GARLYEWDTPT 213 (544)
Q Consensus 174 g~~~~~~lLL~GPpG~GKTtla~~lA~el---------g~~viei~~s~ 213 (544)
|-++...+.|+||||+||||+++.+|... +..++.++...
T Consensus 127 gi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 127 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence 45556799999999999999999999886 24667777654
No 130
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.41 E-value=0.0001 Score=67.02 Aligned_cols=30 Identities=27% Similarity=0.452 Sum_probs=27.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCeEEE
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLGARLYE 208 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg~~vie 208 (544)
+.++|.||||+||||+++.||+.+++.++.
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l~~~~~d 34 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDLDLVFLD 34 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCEEc
Confidence 368999999999999999999999988765
No 131
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.41 E-value=0.00083 Score=70.90 Aligned_cols=40 Identities=18% Similarity=0.295 Sum_probs=31.3
Q ss_pred CCCCccEEEEEcCCCCcHHHHHHHHHHHh----CCeEEEEeCCC
Q 009072 174 DKFSTNVLVITGQAGVGKTATVRQIASHL----GARLYEWDTPT 213 (544)
Q Consensus 174 g~~~~~~lLL~GPpG~GKTtla~~lA~el----g~~viei~~s~ 213 (544)
|..++..++|.||||+||||++..+|..+ |.+++.+....
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~ 242 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEM 242 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSS
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 55566799999999999999999988764 55676665443
No 132
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=97.41 E-value=0.0012 Score=63.19 Aligned_cols=33 Identities=18% Similarity=0.044 Sum_probs=27.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeC
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLGARLYEWDT 211 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg~~viei~~ 211 (544)
+.++++||+|+|||.++..++..++..++.+..
T Consensus 109 ~~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P 141 (237)
T 2fz4_A 109 KRGCIVLPTGSGKTHVAMAAINELSTPTLIVVP 141 (237)
T ss_dssp SEEEEEESSSTTHHHHHHHHHHHSCSCEEEEES
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeC
Confidence 359999999999999999999998777766643
No 133
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.40 E-value=0.00012 Score=66.07 Aligned_cols=31 Identities=23% Similarity=0.379 Sum_probs=28.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLGARLYEW 209 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg~~viei 209 (544)
.+++|+|+|||||||+++.||+.+|++++..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~ 38 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDT 38 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 5899999999999999999999999998753
No 134
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.40 E-value=0.00011 Score=66.36 Aligned_cols=30 Identities=30% Similarity=0.609 Sum_probs=27.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCeEEE
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLGARLYE 208 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg~~vie 208 (544)
..++|+||||+||||+++.||..+++.++.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~~~id 34 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYD 34 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTCEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEe
Confidence 579999999999999999999999987653
No 135
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.40 E-value=0.0001 Score=67.40 Aligned_cols=31 Identities=32% Similarity=0.484 Sum_probs=28.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLGARLYEW 209 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg~~viei 209 (544)
+.++|+|+||+||||+++.||+.+|+.++..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~ 33 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDT 33 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEEeC
Confidence 4699999999999999999999999988753
No 136
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.38 E-value=0.00012 Score=66.72 Aligned_cols=30 Identities=33% Similarity=0.563 Sum_probs=27.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCeEEE
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLGARLYE 208 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg~~vie 208 (544)
+.++|+||||+||||+++.||+.+++.++.
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~~~~~~~~~ 41 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASKSGLKYIN 41 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHhCCeEEE
Confidence 579999999999999999999999988764
No 137
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.36 E-value=0.0099 Score=62.02 Aligned_cols=183 Identities=11% Similarity=0.107 Sum_probs=90.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeCCCchhh-hhhhh--ccccCcc-----c-ccchHHHHHHHHHHH
Q 009072 178 TNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTPTPTIW-QEYMH--NCKTGLE-----Y-TSKLDEFENFVERIR 245 (544)
Q Consensus 178 ~~~lLL~GPpG~GKTtla~~lA~el---g~~viei~~s~~~~~-~e~l~--~~~~g~~-----~-~s~~~~~~~~l~~~~ 245 (544)
+..+++.||+|+||||++..||..+ |..+.-+.+...+.. .+.+. ....++. . ........+.+..+.
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a~ 179 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYFK 179 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999999876 777776665443311 01000 0011111 1 112222344455544
Q ss_pred hhcCCCCCCCCCCCCceEEEEecCCCCCchhHHHHHHHHHHHHHhcCCCcEEEEEccCCCCCCCCccccchHHHHHHHhh
Q 009072 246 RYGSTSPSIPGESKSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPTAVVLTECGKADSVDSTAQSFEELQSILVD 325 (544)
Q Consensus 246 ~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~~~~~~~~~L~~~~~~~~~piIiI~t~~~~~~~~d~~~~~l~~l~~ll~r 325 (544)
.. ...++|||.+.........-.-...+..... ...+++++.... . .........+...
T Consensus 180 ~~------------~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~--pd~vlLVvDA~~-g------q~a~~~a~~f~~~ 238 (443)
T 3dm5_A 180 SK------------GVDIIIVDTAGRHKEDKALIEEMKQISNVIH--PHEVILVIDGTI-G------QQAYNQALAFKEA 238 (443)
T ss_dssp HT------------TCSEEEEECCCCSSCCHHHHHHHHHHHHHHC--CSEEEEEEEGGG-G------GGHHHHHHHHHHS
T ss_pred hC------------CCCEEEEECCCcccchHHHHHHHHHHHHhhc--CceEEEEEeCCC-c------hhHHHHHHHHHhh
Confidence 31 2459999999776543221111112223332 122444443211 0 0112222333333
Q ss_pred cCceeEEecCCCHHHHHHHHHHHHHHhCCCC---------------CH-HHHHHHHHHcCCcHHHHHHHHHHhc
Q 009072 326 AGARKVALNPITNGSIKRTLSKICRQEQYSL---------------ST-EQIDLVAQASGGDIRQAITSLQFSS 383 (544)
Q Consensus 326 ~~~~~I~f~p~s~~~i~~~L~~i~~~e~~~i---------------~~-~~l~~Ia~~s~GDiR~aIn~Lq~~~ 383 (544)
.....+-++.++...-...+..+....++++ ++ ..+..|. --||+-..+...|-..
T Consensus 239 ~~i~gVIlTKlD~~~~gG~~ls~~~~~g~PI~fig~Ge~vddL~~f~~~~~~~~ll--g~gd~~~l~e~~~~~~ 310 (443)
T 3dm5_A 239 TPIGSIIVTKLDGSAKGGGALSAVAATGAPIKFIGTGEKIDDIEPFDPPRFVSRLL--GLGDIQGLLEKFKELE 310 (443)
T ss_dssp CTTEEEEEECCSSCSSHHHHHHHHHTTCCCEEEEECSSSTTCEEECCHHHHHHHHT--TTTCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCcccccHHHHHHHHHCCCEEEEEcCCChHHhhhCCHHHHHHHHc--CCCcHHHHHHHHHHhh
Confidence 3455677888766544334444444333321 22 3333332 4689988887776653
No 138
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.36 E-value=0.0013 Score=67.15 Aligned_cols=34 Identities=24% Similarity=0.491 Sum_probs=27.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh----CCeEEEEeCC
Q 009072 179 NVLVITGQAGVGKTATVRQIASHL----GARLYEWDTP 212 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~el----g~~viei~~s 212 (544)
..+++.||+|+||||++++++..+ +..++.+..+
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~ 161 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDP 161 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESS
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCc
Confidence 589999999999999999998876 4556655544
No 139
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.36 E-value=0.00037 Score=65.99 Aligned_cols=33 Identities=27% Similarity=0.278 Sum_probs=26.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeC
Q 009072 179 NVLVITGQAGVGKTATVRQIASHL---GARLYEWDT 211 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~el---g~~viei~~ 211 (544)
-.+++.|+||+||||++-.+|..+ |+.++-+..
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~ 42 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVV 42 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEe
Confidence 469999999999999998888775 788765544
No 140
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.36 E-value=0.00014 Score=65.34 Aligned_cols=30 Identities=30% Similarity=0.535 Sum_probs=27.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLGARLYEW 209 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg~~viei 209 (544)
..++|+||||+||||+++.| +.+|+.++..
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 47999999999999999999 9999998764
No 141
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.35 E-value=0.0014 Score=69.00 Aligned_cols=40 Identities=20% Similarity=0.200 Sum_probs=31.6
Q ss_pred CCCCccEEEEEcCCCCcHHHHHHHHHHHh----CCeEEEEeCCC
Q 009072 174 DKFSTNVLVITGQAGVGKTATVRQIASHL----GARLYEWDTPT 213 (544)
Q Consensus 174 g~~~~~~lLL~GPpG~GKTtla~~lA~el----g~~viei~~s~ 213 (544)
|..+...++|.|+||+|||+++..+|... |.+++.+....
T Consensus 196 Gl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~ 239 (444)
T 2q6t_A 196 TLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEM 239 (444)
T ss_dssp CCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSS
T ss_pred CcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 66666899999999999999999888753 55677666543
No 142
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.33 E-value=0.00057 Score=82.98 Aligned_cols=40 Identities=20% Similarity=0.148 Sum_probs=32.2
Q ss_pred CCCCccEEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeCCC
Q 009072 174 DKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTPT 213 (544)
Q Consensus 174 g~~~~~~lLL~GPpG~GKTtla~~lA~el---g~~viei~~s~ 213 (544)
|-+++..++|+||||||||++|.++|.+. |..+..+....
T Consensus 1423 Gi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~ 1465 (2050)
T 3cmu_A 1423 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 1465 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTS
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEccc
Confidence 34566899999999999999999997764 66777776554
No 143
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.32 E-value=0.00016 Score=66.40 Aligned_cols=30 Identities=37% Similarity=0.482 Sum_probs=27.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH-hCCeEEE
Q 009072 179 NVLVITGQAGVGKTATVRQIASH-LGARLYE 208 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~e-lg~~vie 208 (544)
..++|+|+|||||||+++.||+. +|+.++.
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~l~g~~~id 41 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAELDGFQHLE 41 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSTTEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCEEee
Confidence 68999999999999999999999 7888764
No 144
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.31 E-value=0.00016 Score=65.28 Aligned_cols=30 Identities=27% Similarity=0.500 Sum_probs=27.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCeEEE
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLGARLYE 208 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg~~vie 208 (544)
+.++|+|+||+||||+++.|++.+|+.++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVD 32 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEc
Confidence 479999999999999999999999998765
No 145
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.31 E-value=0.00015 Score=70.49 Aligned_cols=32 Identities=31% Similarity=0.305 Sum_probs=28.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEe
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLGARLYEWD 210 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg~~viei~ 210 (544)
+.++|.||||+||||+++.||+++++.++..+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~~~~i~~D 33 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETGWPVVALD 33 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCCEEECC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCCCeEEecc
Confidence 46899999999999999999999999887544
No 146
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=97.30 E-value=0.00012 Score=68.50 Aligned_cols=23 Identities=30% Similarity=0.557 Sum_probs=19.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 009072 179 NVLVITGQAGVGKTATVRQIASH 201 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~e 201 (544)
-+.|++|+||+|||+.|..++..
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Confidence 58899999999999998776544
No 147
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.29 E-value=0.00018 Score=68.01 Aligned_cols=31 Identities=23% Similarity=0.339 Sum_probs=28.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLGARLYEW 209 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg~~viei 209 (544)
..++|.||||+||||+++.||+.+|+.++..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 5799999999999999999999999988754
No 148
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.29 E-value=0.00016 Score=66.21 Aligned_cols=30 Identities=23% Similarity=0.494 Sum_probs=27.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCeEEE
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLGARLYE 208 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg~~vie 208 (544)
..++|.||||+||||+++.||+.+|+.++.
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l~~~~i~ 34 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQELGFKKLS 34 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTCEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 579999999999999999999999987653
No 149
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.29 E-value=0.00022 Score=66.34 Aligned_cols=31 Identities=23% Similarity=0.351 Sum_probs=28.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLGARLYEW 209 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg~~viei 209 (544)
..++|+||||+||||+++.|++.+++.++..
T Consensus 21 ~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 5899999999999999999999999987654
No 150
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.29 E-value=0.00019 Score=66.10 Aligned_cols=31 Identities=23% Similarity=0.426 Sum_probs=28.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLGARLYEW 209 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg~~viei 209 (544)
..++|.||||+||||+++.||+.+|+.++..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 40 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQKYGYTHLST 40 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 6899999999999999999999999887643
No 151
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.28 E-value=0.00019 Score=65.92 Aligned_cols=30 Identities=23% Similarity=0.382 Sum_probs=27.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCeEEE
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLGARLYE 208 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg~~vie 208 (544)
..++|.|+||+||||+++.|++.+|+.++.
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~ 33 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKYGYTHLS 33 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence 689999999999999999999999988764
No 152
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.28 E-value=0.00013 Score=66.19 Aligned_cols=30 Identities=20% Similarity=0.359 Sum_probs=25.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHH-HhCCeEEE
Q 009072 179 NVLVITGQAGVGKTATVRQIAS-HLGARLYE 208 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~-elg~~vie 208 (544)
..++|.||||+||||+++.|++ .+++.++.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~~~~~~~i~ 33 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNIN 33 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEEC
T ss_pred eEEEEecCCCCCHHHHHHHHHhhcCCcEEec
Confidence 5799999999999999999999 57765543
No 153
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.28 E-value=0.00018 Score=67.01 Aligned_cols=30 Identities=30% Similarity=0.467 Sum_probs=27.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCeEEE
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLGARLYE 208 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg~~vie 208 (544)
..++|+||||+||||+++.|++.+|+.++.
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~lg~~~i~ 48 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEACGYPFIE 48 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHHTCCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCEEEe
Confidence 589999999999999999999999988765
No 154
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.27 E-value=0.00017 Score=66.06 Aligned_cols=29 Identities=31% Similarity=0.530 Sum_probs=26.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhC-----CeEE
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLG-----ARLY 207 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg-----~~vi 207 (544)
..++|+||||+||||+++.|++.++ +.++
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i 37 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMV 37 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEE
Confidence 5899999999999999999999987 6655
No 155
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.26 E-value=0.0025 Score=63.84 Aligned_cols=39 Identities=18% Similarity=0.177 Sum_probs=31.0
Q ss_pred CCCCccEEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeCC
Q 009072 174 DKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTP 212 (544)
Q Consensus 174 g~~~~~~lLL~GPpG~GKTtla~~lA~el---g~~viei~~s 212 (544)
|..+...++|.|+||+|||+++..+|... |.+++.+...
T Consensus 64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE 105 (315)
T 3bh0_A 64 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 105 (315)
T ss_dssp SBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECC
Confidence 56666799999999999999999998764 4566666544
No 156
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.25 E-value=0.00092 Score=65.60 Aligned_cols=29 Identities=21% Similarity=0.357 Sum_probs=24.0
Q ss_pred CCCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 009072 174 DKFSTNVLVITGQAGVGKTATVRQIASHL 202 (544)
Q Consensus 174 g~~~~~~lLL~GPpG~GKTtla~~lA~el 202 (544)
|.++...++|+||||+||||++..+|..+
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 33344789999999999999999998754
No 157
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.25 E-value=0.00014 Score=66.37 Aligned_cols=29 Identities=31% Similarity=0.485 Sum_probs=23.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCeEE
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLGARLY 207 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg~~vi 207 (544)
..++|+|+||+||||+++.|++.+++.++
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 68999999999999999999999999876
No 158
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.25 E-value=0.00022 Score=65.86 Aligned_cols=31 Identities=19% Similarity=0.383 Sum_probs=28.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLGARLYEW 209 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg~~viei 209 (544)
..++|+||||+||||+++.|++.+|+.++..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 43 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYGFTHLST 43 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 6899999999999999999999999887653
No 159
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.24 E-value=0.00035 Score=67.64 Aligned_cols=34 Identities=24% Similarity=0.342 Sum_probs=28.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeC
Q 009072 178 TNVLVITGQAGVGKTATVRQIASHLGARLYEWDT 211 (544)
Q Consensus 178 ~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~ 211 (544)
+..++|.||||+||||+++.|++.++..++.++.
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~ 65 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDG 65 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEec
Confidence 3789999999999999999999999855444443
No 160
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.24 E-value=0.0002 Score=67.72 Aligned_cols=30 Identities=17% Similarity=0.363 Sum_probs=27.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhCCeEE
Q 009072 178 TNVLVITGQAGVGKTATVRQIASHLGARLY 207 (544)
Q Consensus 178 ~~~lLL~GPpG~GKTtla~~lA~elg~~vi 207 (544)
+++++|.||||+||+|.|+.||+.+|+..+
T Consensus 29 ~kiI~llGpPGsGKgTqa~~L~~~~g~~hI 58 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQCEKLVQKFHFNHL 58 (217)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHHHHCCEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHCCceE
Confidence 378999999999999999999999998765
No 161
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.23 E-value=0.00082 Score=67.44 Aligned_cols=28 Identities=29% Similarity=0.272 Sum_probs=24.5
Q ss_pred CCCCccEEEEEcCCCCcHHHHHHHHHHH
Q 009072 174 DKFSTNVLVITGQAGVGKTATVRQIASH 201 (544)
Q Consensus 174 g~~~~~~lLL~GPpG~GKTtla~~lA~e 201 (544)
|.++...++|+||||+|||+++..+|..
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5556679999999999999999999876
No 162
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.23 E-value=0.00023 Score=65.26 Aligned_cols=31 Identities=26% Similarity=0.365 Sum_probs=28.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLGARLYEW 209 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg~~viei 209 (544)
+.++|+|+||+||||+++.|++.+|+.++..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence 6899999999999999999999999877643
No 163
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.22 E-value=0.0011 Score=62.53 Aligned_cols=40 Identities=20% Similarity=0.225 Sum_probs=30.3
Q ss_pred CCCCccEEEEEcCCCCcHHHHHHHHHHHh---------CCeEEEEeCCC
Q 009072 174 DKFSTNVLVITGQAGVGKTATVRQIASHL---------GARLYEWDTPT 213 (544)
Q Consensus 174 g~~~~~~lLL~GPpG~GKTtla~~lA~el---------g~~viei~~s~ 213 (544)
|-.+...+.|.||+|+||||+++.++..+ +...+.+....
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~ 69 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 69 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCC
Confidence 44455789999999999999999999854 33366666544
No 164
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.21 E-value=0.00027 Score=66.70 Aligned_cols=31 Identities=19% Similarity=0.288 Sum_probs=28.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLGARLYEW 209 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg~~viei 209 (544)
..++|.||||+||||+++.||+.+++.++..
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 6799999999999999999999999887653
No 165
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=97.20 E-value=0.01 Score=67.88 Aligned_cols=43 Identities=19% Similarity=0.189 Sum_probs=36.6
Q ss_pred ccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHH
Q 009072 152 AVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASH 201 (544)
Q Consensus 152 v~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~e 201 (544)
+|++..+++|.+||... .. .+.+.|+||+|+||||+|+.+++.
T Consensus 131 VGRe~eLeeL~elL~~~-----d~--~RVV~IvGmGGIGKTTLAk~Vy~d 173 (1221)
T 1vt4_I 131 VSRLQPYLKLRQALLEL-----RP--AKNVLIDGVLGSGKTWVALDVCLS 173 (1221)
T ss_dssp CCCHHHHHHHHHHHHHC-----CS--SCEEEECCSTTSSHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHhcc-----CC--CeEEEEEcCCCccHHHHHHHHHHh
Confidence 89999999999999752 11 278999999999999999999863
No 166
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.20 E-value=0.00031 Score=63.66 Aligned_cols=30 Identities=30% Similarity=0.585 Sum_probs=27.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCeEEE
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLGARLYE 208 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg~~vie 208 (544)
..++|.||+|+||||+++.++..+|..++.
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~ 38 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQLHAAFLD 38 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhhCcEEEe
Confidence 689999999999999999999999877654
No 167
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.19 E-value=0.0011 Score=61.26 Aligned_cols=32 Identities=19% Similarity=0.188 Sum_probs=27.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEe
Q 009072 179 NVLVITGQAGVGKTATVRQIASHL---GARLYEWD 210 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~el---g~~viei~ 210 (544)
+..+++||+|+||||++..++..+ |..++-+.
T Consensus 9 ~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k 43 (191)
T 1xx6_A 9 WVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFK 43 (191)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 689999999999999998888775 77777665
No 168
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.19 E-value=0.00026 Score=66.60 Aligned_cols=30 Identities=27% Similarity=0.348 Sum_probs=27.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 009072 180 VLVITGQAGVGKTATVRQIASHLGARLYEW 209 (544)
Q Consensus 180 ~lLL~GPpG~GKTtla~~lA~elg~~viei 209 (544)
.++|+||||+||||+++.||+++|+.++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 478999999999999999999999887754
No 169
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.18 E-value=0.00027 Score=66.41 Aligned_cols=30 Identities=23% Similarity=0.294 Sum_probs=27.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 009072 180 VLVITGQAGVGKTATVRQIASHLGARLYEW 209 (544)
Q Consensus 180 ~lLL~GPpG~GKTtla~~lA~elg~~viei 209 (544)
.++|+||||+||||+++.|++++|+.++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 478999999999999999999999887754
No 170
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.18 E-value=0.00031 Score=65.33 Aligned_cols=30 Identities=30% Similarity=0.491 Sum_probs=26.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCeEEE
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLGARLYE 208 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg~~vie 208 (544)
..++|.||+|+||||+++.|+..+|..++.
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~ 59 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVADETGLEFAE 59 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHCCEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCeEEc
Confidence 689999999999999999999999876553
No 171
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.17 E-value=0.00029 Score=63.20 Aligned_cols=30 Identities=17% Similarity=0.281 Sum_probs=27.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 009072 180 VLVITGQAGVGKTATVRQIASHLGARLYEW 209 (544)
Q Consensus 180 ~lLL~GPpG~GKTtla~~lA~elg~~viei 209 (544)
.++|+|+||+||||+++.|++.+|+.++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 31 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYDV 31 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 589999999999999999999999988753
No 172
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.17 E-value=0.0013 Score=62.87 Aligned_cols=39 Identities=21% Similarity=0.142 Sum_probs=28.0
Q ss_pred CCCccEEEEEcCCCCcHHHHHHHHHH--H--hCCeEEEEeCCC
Q 009072 175 KFSTNVLVITGQAGVGKTATVRQIAS--H--LGARLYEWDTPT 213 (544)
Q Consensus 175 ~~~~~~lLL~GPpG~GKTtla~~lA~--e--lg~~viei~~s~ 213 (544)
-.+...+.|.||+|+||||+++.++. . .+...+.+....
T Consensus 27 i~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~ 69 (251)
T 2ehv_A 27 FPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEE 69 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccC
Confidence 33447899999999999999999983 2 344555555433
No 173
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.15 E-value=0.00037 Score=63.49 Aligned_cols=33 Identities=30% Similarity=0.449 Sum_probs=29.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEe
Q 009072 178 TNVLVITGQAGVGKTATVRQIASHL---GARLYEWD 210 (544)
Q Consensus 178 ~~~lLL~GPpG~GKTtla~~lA~el---g~~viei~ 210 (544)
+..++|+|++|+||||+++.|+..+ |++++.++
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d 40 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLD 40 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEEC
Confidence 3689999999999999999999998 88887665
No 174
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.15 E-value=0.00029 Score=66.88 Aligned_cols=31 Identities=26% Similarity=0.349 Sum_probs=28.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLGARLYEW 209 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg~~viei 209 (544)
..++|.||||+||||+++.||+.+|+.++..
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 6899999999999999999999999887753
No 175
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.15 E-value=0.0015 Score=67.53 Aligned_cols=40 Identities=15% Similarity=0.136 Sum_probs=30.3
Q ss_pred CCCCccEEEEEcCCCCcHHHHHHHHHHHh---------CCeEEEEeCCC
Q 009072 174 DKFSTNVLVITGQAGVGKTATVRQIASHL---------GARLYEWDTPT 213 (544)
Q Consensus 174 g~~~~~~lLL~GPpG~GKTtla~~lA~el---------g~~viei~~s~ 213 (544)
|-++...++|+||||+||||+++.+|-.. +..++.+....
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC
Confidence 55566899999999999999999776442 34577776654
No 176
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.15 E-value=0.00031 Score=65.29 Aligned_cols=31 Identities=16% Similarity=0.292 Sum_probs=28.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLGARLYEW 209 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg~~viei 209 (544)
..++|+||||+||||+++.|++.+|+.++..
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~ 46 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKDYSFVHLSA 46 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCceEEeH
Confidence 5899999999999999999999999877653
No 177
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.14 E-value=0.0051 Score=56.56 Aligned_cols=25 Identities=24% Similarity=0.551 Sum_probs=22.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhC
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLG 203 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg 203 (544)
+.++|+||+|+||||+++.|.++..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCC
Confidence 5699999999999999999998864
No 178
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.13 E-value=0.00034 Score=65.64 Aligned_cols=29 Identities=28% Similarity=0.469 Sum_probs=26.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCeEEE
Q 009072 180 VLVITGQAGVGKTATVRQIASHLGARLYE 208 (544)
Q Consensus 180 ~lLL~GPpG~GKTtla~~lA~elg~~vie 208 (544)
.++|.||||+||+|.|+.||+.+|+..+.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~is 30 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHIS 30 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEEc
Confidence 57899999999999999999999988654
No 179
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.09 E-value=0.00039 Score=66.97 Aligned_cols=31 Identities=13% Similarity=0.100 Sum_probs=28.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLGARLYEW 209 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg~~viei 209 (544)
..++|+||||+||||+++.|++++|+.++..
T Consensus 30 ~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~ 60 (243)
T 3tlx_A 30 GRYIFLGAPGSGKGTQSLNLKKSHCYCHLST 60 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 6899999999999999999999999887754
No 180
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.09 E-value=0.0039 Score=62.88 Aligned_cols=118 Identities=14% Similarity=0.203 Sum_probs=68.6
Q ss_pred CCCCccEEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeCCCch-hhhhhhhccccCccc-------------------
Q 009072 174 DKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTPTPT-IWQEYMHNCKTGLEY------------------- 230 (544)
Q Consensus 174 g~~~~~~lLL~GPpG~GKTtla~~lA~el---g~~viei~~s~~~-~~~e~l~~~~~g~~~------------------- 230 (544)
|..+...++|.|+||+|||+++..+|..+ |.+++.+...... .....+.....++..
T Consensus 42 Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlEms~~ql~~Rlls~~~~v~~~~l~~g~Ls~~e~~~l~~a 121 (338)
T 4a1f_A 42 GFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLEMSAEQLALRALSDLTSINMHDLESGRLDDDQWENLAKC 121 (338)
T ss_dssp SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESSSCHHHHHHHHHHHHHCCCHHHHHHTCCCHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHHhhCCCHHHHhcCCCCHHHHHHHHHH
Confidence 55566799999999999999999998774 6777666554322 111111000000000
Q ss_pred ---------------ccchHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCCCCCchh-------HHHHHHHHHHHH
Q 009072 231 ---------------TSKLDEFENFVERIRRYGSTSPSIPGESKSSAILLIDDLPVTNGRT-------AFERLRQCLLLL 288 (544)
Q Consensus 231 ---------------~s~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~vIlIDEid~l~~~~-------~~~~~~~~L~~~ 288 (544)
......+...+.++.+. .+.+.+||||-+..+.... ....+...|..+
T Consensus 122 ~~~l~~~~l~I~d~~~~si~~i~~~ir~l~~~----------~gg~~lIVIDyLqlm~~~~~~~~r~~ei~~isr~LK~l 191 (338)
T 4a1f_A 122 FDHLSQKKLFFYDKSYVRIEQIRLQLRKLKSQ----------HKELGIAFIDYLQLMSGSKATKERHEQIAEISRELKTL 191 (338)
T ss_dssp HHHHHHSCEEEECCTTCCHHHHHHHHHHHHHH----------CTTEEEEEEEEEECCCTHHHHHHCCCCHHHHHHHHHHH
T ss_pred HHHHhcCCeEEeCCCCCcHHHHHHHHHHHHHh----------cCCCCEEEEechHHhcCCCCCCChHHHHHHHHHHHHHH
Confidence 00122333333332211 0147899999999885432 234455667778
Q ss_pred HhcCCCcEEEEEc
Q 009072 289 VRSTHIPTAVVLT 301 (544)
Q Consensus 289 ~~~~~~piIiI~t 301 (544)
.....+|+|++.-
T Consensus 192 Akel~vpVi~lsQ 204 (338)
T 4a1f_A 192 ARELEIPIIALVQ 204 (338)
T ss_dssp HHHHTSCEEEEEE
T ss_pred HHHcCCeEEEEEe
Confidence 8888888888763
No 181
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.09 E-value=0.015 Score=60.67 Aligned_cols=36 Identities=22% Similarity=0.336 Sum_probs=29.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeCCC
Q 009072 178 TNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTPT 213 (544)
Q Consensus 178 ~~~lLL~GPpG~GKTtla~~lA~el---g~~viei~~s~ 213 (544)
+..+++.||+|+||||++..+|..+ |..+.-+.+..
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~ 135 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADV 135 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCc
Confidence 4799999999999999999999766 77776666544
No 182
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.08 E-value=0.00042 Score=66.15 Aligned_cols=31 Identities=19% Similarity=0.237 Sum_probs=28.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLGARLYEW 209 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg~~viei 209 (544)
..++|.|+||+||||+++.||+.+++.++..
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 5799999999999999999999999887653
No 183
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.07 E-value=0.00033 Score=64.33 Aligned_cols=34 Identities=24% Similarity=0.507 Sum_probs=28.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeC
Q 009072 178 TNVLVITGQAGVGKTATVRQIASHLGARLYEWDT 211 (544)
Q Consensus 178 ~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~ 211 (544)
+..++|.||||+||||+++.|+..++...+.++.
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~ 42 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANLPGVPKVHFHS 42 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECT
T ss_pred CeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcc
Confidence 3689999999999999999999987666666654
No 184
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.06 E-value=0.00044 Score=65.33 Aligned_cols=30 Identities=30% Similarity=0.501 Sum_probs=27.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCeEEE
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLGARLYE 208 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg~~vie 208 (544)
..+.|.||+||||||+++.|++.+|+.++.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d 35 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLLD 35 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 579999999999999999999999987653
No 185
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.06 E-value=0.00068 Score=62.11 Aligned_cols=34 Identities=24% Similarity=0.431 Sum_probs=29.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeCCC
Q 009072 180 VLVITGQAGVGKTATVRQIASHL---GARLYEWDTPT 213 (544)
Q Consensus 180 ~lLL~GPpG~GKTtla~~lA~el---g~~viei~~s~ 213 (544)
.++|+|+||+||||+++.|++.+ |+.++....+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d~~~ 38 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYREPG 38 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 58999999999999999999998 99988776543
No 186
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.05 E-value=0.00067 Score=62.43 Aligned_cols=35 Identities=23% Similarity=0.421 Sum_probs=29.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeCCCc
Q 009072 180 VLVITGQAGVGKTATVRQIASHL---GARLYEWDTPTP 214 (544)
Q Consensus 180 ~lLL~GPpG~GKTtla~~lA~el---g~~viei~~s~~ 214 (544)
.++|+||+|+||||+++.|++.+ |+.++....+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~~~~ 39 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKREPGG 39 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEESSCS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEeeCCCC
Confidence 58999999999999999999999 999987766543
No 187
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.03 E-value=0.01 Score=58.95 Aligned_cols=34 Identities=24% Similarity=0.401 Sum_probs=27.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeC
Q 009072 178 TNVLVITGQAGVGKTATVRQIASHL---GARLYEWDT 211 (544)
Q Consensus 178 ~~~lLL~GPpG~GKTtla~~lA~el---g~~viei~~ 211 (544)
+..++|.||+|+||||++..+|..+ |..+.-+..
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~ 140 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAA 140 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcc
Confidence 4789999999999999999999875 566655443
No 188
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.02 E-value=0.00033 Score=66.19 Aligned_cols=29 Identities=17% Similarity=0.218 Sum_probs=26.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCeEE
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLGARLY 207 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg~~vi 207 (544)
..++|.||||+||||+++.||+.+++.++
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l~~~~i 34 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKYQLAHI 34 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHCCEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcee
Confidence 57999999999999999999999997654
No 189
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.01 E-value=0.00046 Score=64.84 Aligned_cols=30 Identities=17% Similarity=0.231 Sum_probs=27.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 009072 180 VLVITGQAGVGKTATVRQIASHLGARLYEW 209 (544)
Q Consensus 180 ~lLL~GPpG~GKTtla~~lA~elg~~viei 209 (544)
.++|.||||+||||+++.|++.+|+.++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 479999999999999999999999887654
No 190
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.01 E-value=0.00062 Score=73.97 Aligned_cols=35 Identities=31% Similarity=0.512 Sum_probs=27.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeCCCc
Q 009072 179 NVLVITGQAGVGKTATVRQIASHL---GARLYEWDTPTP 214 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~el---g~~viei~~s~~ 214 (544)
+.++|+|||||||||++..++..+ |..++ +.+++.
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl-~~ApT~ 242 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVG-LCAPTG 242 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEE-EEESSH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEE-EecCcH
Confidence 689999999999999999998764 66655 344443
No 191
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.00 E-value=0.00049 Score=63.78 Aligned_cols=35 Identities=20% Similarity=0.326 Sum_probs=30.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh-CCeEEEEeCCC
Q 009072 179 NVLVITGQAGVGKTATVRQIASHL-GARLYEWDTPT 213 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~el-g~~viei~~s~ 213 (544)
..++|.||+|+||||+++.|++.+ |++++.+..+.
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~~~ 40 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESIPANTIKYLNFPQ 40 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEESSC
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEecCC
Confidence 689999999999999999999998 68777766544
No 192
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.99 E-value=0.00052 Score=63.47 Aligned_cols=28 Identities=29% Similarity=0.599 Sum_probs=25.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCeEE
Q 009072 180 VLVITGQAGVGKTATVRQIASHLGARLY 207 (544)
Q Consensus 180 ~lLL~GPpG~GKTtla~~lA~elg~~vi 207 (544)
.++|.|++|+||||+++.||+.++..++
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~ 29 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIF 29 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEE
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEE
Confidence 5899999999999999999999998654
No 193
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=96.99 E-value=0.0028 Score=66.34 Aligned_cols=101 Identities=15% Similarity=0.017 Sum_probs=53.1
Q ss_pred ceEEEEecCCCCCchhHHHHHHHHHHHHHhcCC---------CcEEEEEccCCCCCCCCc--cccchHHHHHHHhhcCce
Q 009072 261 SAILLIDDLPVTNGRTAFERLRQCLLLLVRSTH---------IPTAVVLTECGKADSVDS--TAQSFEELQSILVDAGAR 329 (544)
Q Consensus 261 ~~vIlIDEid~l~~~~~~~~~~~~L~~~~~~~~---------~piIiI~t~~~~~~~~d~--~~~~l~~l~~ll~r~~~~ 329 (544)
..++++||++.+... .+.+|++.++... .+..+|++.+... ..+. .........++++|+...
T Consensus 301 gGvl~lDEIn~~~~~-----~qsaLlEaMEe~~VtI~G~~lparf~VIAA~NP~~-~yd~~~s~~~~~Lp~alLDRFDLi 374 (506)
T 3f8t_A 301 GGILAVDHLEGAPEP-----HRWALMEAMDKGTVTVDGIALNARCAVLAAINPGE-QWPSDPPIARIDLDQDFLSHFDLI 374 (506)
T ss_dssp TSEEEEECCTTCCHH-----HHHHHHHHHHHSEEEETTEEEECCCEEEEEECCCC---CCSCGGGGCCSCHHHHTTCSEE
T ss_pred CCeeehHhhhhCCHH-----HHHHHHHHHhCCcEEECCEEcCCCeEEEEEeCccc-ccCCCCCccccCCChHHhhheeeE
Confidence 359999999998643 3445666666432 3444555443221 1000 000112225778886333
Q ss_pred eEEec-------------CCCHHHHHHHHHHHH-HHhCCCCCHHHHHHHHHH
Q 009072 330 KVALN-------------PITNGSIKRTLSKIC-RQEQYSLSTEQIDLVAQA 367 (544)
Q Consensus 330 ~I~f~-------------p~s~~~i~~~L~~i~-~~e~~~i~~~~l~~Ia~~ 367 (544)
.+... .++.+.+++++...- ..-...+++++.+.|+..
T Consensus 375 ~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~~ar~~~~~p~ls~ea~~yI~~~ 426 (506)
T 3f8t_A 375 AFLGVDPRPGEPEEQDTEVPSYTLLRRYLLYAIREHPAPELTEEARKRLEHW 426 (506)
T ss_dssp EETTC--------------CCHHHHHHHHHHHHHHCSCCEECHHHHHHHHHH
T ss_pred EEecCCCChhHhhcccCCCCCHHHHHHHHHHHHhcCCCceeCHHHHHHHHHH
Confidence 33222 345566666666442 122567888888877765
No 194
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.98 E-value=0.0061 Score=64.00 Aligned_cols=39 Identities=18% Similarity=0.177 Sum_probs=31.3
Q ss_pred CCCCccEEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeCC
Q 009072 174 DKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTP 212 (544)
Q Consensus 174 g~~~~~~lLL~GPpG~GKTtla~~lA~el---g~~viei~~s 212 (544)
|..+...++|.|+||+|||+++..+|... |.+++.+...
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlE 234 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 234 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECC
Confidence 56666799999999999999998888765 6677766544
No 195
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.97 E-value=0.00033 Score=64.17 Aligned_cols=25 Identities=28% Similarity=0.569 Sum_probs=23.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhC
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLG 203 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg 203 (544)
+.++|.||||+||||+++.|++.++
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999999886
No 196
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.96 E-value=0.0037 Score=75.10 Aligned_cols=40 Identities=20% Similarity=0.148 Sum_probs=32.1
Q ss_pred CCCCccEEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeCCC
Q 009072 174 DKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTPT 213 (544)
Q Consensus 174 g~~~~~~lLL~GPpG~GKTtla~~lA~el---g~~viei~~s~ 213 (544)
|.++...++|+||||+||||++..+|.++ +..++.+....
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ee 770 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 770 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTS
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccc
Confidence 45666899999999999999999998875 55677666554
No 197
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.96 E-value=0.00059 Score=64.68 Aligned_cols=30 Identities=20% Similarity=0.232 Sum_probs=26.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 009072 180 VLVITGQAGVGKTATVRQIASHLGARLYEW 209 (544)
Q Consensus 180 ~lLL~GPpG~GKTtla~~lA~elg~~viei 209 (544)
.++|.||||+||||+++.|++.+|+.++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~~ 31 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHIES 31 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEch
Confidence 589999999999999999999999876643
No 198
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.95 E-value=0.00074 Score=62.83 Aligned_cols=34 Identities=15% Similarity=0.279 Sum_probs=28.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCC--eEEEEeCC
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLGA--RLYEWDTP 212 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg~--~viei~~s 212 (544)
..++|.||||+||||+++.|++.++. +++....+
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~ 40 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELKRDVYLTEWN 40 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTTSCEEEEETT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhcCCEEEecCC
Confidence 67999999999999999999999876 35554444
No 199
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.93 E-value=0.00068 Score=64.79 Aligned_cols=30 Identities=40% Similarity=0.673 Sum_probs=27.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCeEEE
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLGARLYE 208 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg~~vie 208 (544)
..+.|.||||+||||+++.||+.+|+.++.
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~lg~~~~d 39 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARALGARYLD 39 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 579999999999999999999999988754
No 200
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.93 E-value=0.0061 Score=65.08 Aligned_cols=40 Identities=20% Similarity=0.161 Sum_probs=31.5
Q ss_pred CCCCccEEEEEcCCCCcHHHHHHHHHHHh----CCeEEEEeCCC
Q 009072 174 DKFSTNVLVITGQAGVGKTATVRQIASHL----GARLYEWDTPT 213 (544)
Q Consensus 174 g~~~~~~lLL~GPpG~GKTtla~~lA~el----g~~viei~~s~ 213 (544)
|..+...++|.|+||+|||+++..+|... |.+++.+....
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~ 281 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEE 281 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSS
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccC
Confidence 45566799999999999999999998775 45676665543
No 201
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.90 E-value=0.00067 Score=63.03 Aligned_cols=30 Identities=27% Similarity=0.467 Sum_probs=26.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLGARLYEW 209 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg~~viei 209 (544)
..+.|+||+|+||||+++.|++ +|+.++..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~ 31 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE-LGAYVLDA 31 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH-TTCEEEEH
T ss_pred eEEEEECCCCcCHHHHHHHHHH-CCCEEEEc
Confidence 3689999999999999999999 99887754
No 202
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.90 E-value=0.0012 Score=61.06 Aligned_cols=35 Identities=17% Similarity=0.180 Sum_probs=27.3
Q ss_pred ccEEEEEcCCCCcHH-HHHHHHHHH--hCCeEEEEeCC
Q 009072 178 TNVLVITGQAGVGKT-ATVRQIASH--LGARLYEWDTP 212 (544)
Q Consensus 178 ~~~lLL~GPpG~GKT-tla~~lA~e--lg~~viei~~s 212 (544)
.+..++|||.|+||| .+++++.+. .+..++-+.+.
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYA 57 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEET
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccc
Confidence 379999999999999 777777664 36777777644
No 203
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=96.90 E-value=0.018 Score=51.59 Aligned_cols=23 Identities=26% Similarity=0.343 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 009072 179 NVLVITGQAGVGKTATVRQIASH 201 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~e 201 (544)
..++|.|++|+||||+++.+...
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 57999999999999999999854
No 204
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.90 E-value=0.00076 Score=62.64 Aligned_cols=31 Identities=26% Similarity=0.512 Sum_probs=27.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLGARLYEW 209 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg~~viei 209 (544)
+.+.|+||+|+||||+++.||+.+|+.++..
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~lg~~~~d~ 33 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAAALGVPYLSS 33 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCceecc
Confidence 4799999999999999999999999887753
No 205
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.89 E-value=0.00069 Score=65.56 Aligned_cols=31 Identities=26% Similarity=0.498 Sum_probs=28.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLGARLYEW 209 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg~~viei 209 (544)
..++|.||+|+||||+++.||+.+|+.++..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~ 79 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLGYTFFDC 79 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCcEEeC
Confidence 6799999999999999999999999987753
No 206
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.87 E-value=0.00091 Score=62.12 Aligned_cols=24 Identities=29% Similarity=0.457 Sum_probs=23.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 009072 179 NVLVITGQAGVGKTATVRQIASHL 202 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~el 202 (544)
..+.|.||+|+||||+++.||..+
T Consensus 26 ~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 26 CVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 789999999999999999999998
No 207
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=96.87 E-value=0.0016 Score=66.92 Aligned_cols=30 Identities=33% Similarity=0.585 Sum_probs=27.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCeEEE
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLGARLYE 208 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg~~vie 208 (544)
+.++|.||+|+|||+++..||+.++..++.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~~~iis 32 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFNGEVIN 32 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHTEEEEE
T ss_pred cEEEEECcchhhHHHHHHHHHHHCCCeEee
Confidence 689999999999999999999999976644
No 208
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.87 E-value=0.00058 Score=69.11 Aligned_cols=53 Identities=15% Similarity=0.373 Sum_probs=39.4
Q ss_pred hHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeC
Q 009072 155 RKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDT 211 (544)
Q Consensus 155 ~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~ 211 (544)
+..++++...+...... |.. ..++|.||||+||||++++||+.+++.++++++
T Consensus 5 ~~L~~~il~~l~~~i~~--g~~--~~i~l~G~~G~GKTTl~~~la~~l~~~f~~l~a 57 (359)
T 2ga8_A 5 HKLADDVLQLLDNRIED--NYR--VCVILVGSPGSGKSTIAEELCQIINEKYHTFLS 57 (359)
T ss_dssp HHHHHHHHHHHHHTTTT--CSC--EEEEEECCTTSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcc--CCe--eEEEEECCCCCcHHHHHHHHHHHhCCCeeeecc
Confidence 45566666666655432 433 469999999999999999999999887755443
No 209
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.86 E-value=0.00066 Score=62.02 Aligned_cols=26 Identities=23% Similarity=0.411 Sum_probs=23.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhC
Q 009072 178 TNVLVITGQAGVGKTATVRQIASHLG 203 (544)
Q Consensus 178 ~~~lLL~GPpG~GKTtla~~lA~elg 203 (544)
++.++|.||+|+||||+++.|+..+.
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 47899999999999999999999764
No 210
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=96.84 E-value=0.014 Score=73.86 Aligned_cols=143 Identities=11% Similarity=0.124 Sum_probs=84.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCCchhhhhhhhccccCcccccchHHHHHHHHHHHhhcCCCCCCCC
Q 009072 177 STNVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPG 256 (544)
Q Consensus 177 ~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~~~~~~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~ 256 (544)
|..++||.|..|+||++++|..|--.|+.++.+.-+- +.+.....+.++.++.++.
T Consensus 1645 p~GhaLLVGvgGSGkqSLtrLAa~i~~~~vfqi~i~k-------------~Y~~~~f~eDLk~l~~~aG----------- 1700 (3245)
T 3vkg_A 1645 PQGHALLIGVSGGGKSVLSRFVAWMNGLSIYTIKVNN-------------NYKSSDFDDDLRMLLKRAG----------- 1700 (3245)
T ss_dssp TTCCEEEEESTTSSHHHHHHHHHHHTTCEEECCC-----------------CCHHHHHHHHHHHHHHHH-----------
T ss_pred CCCCeEEecCCCCcHHHHHHHHHHHhCCeeEEEeeeC-------------CCCHHHHHHHHHHHHHHHh-----------
Confidence 3478999999999999999999999999998876422 2222222234444554443
Q ss_pred CCCCceEEEEecC--------------------CCCCchhHHHHHHHHHHHHHhc--------------------CCCcE
Q 009072 257 ESKSSAILLIDDL--------------------PVTNGRTAFERLRQCLLLLVRS--------------------THIPT 296 (544)
Q Consensus 257 ~~~~~~vIlIDEi--------------------d~l~~~~~~~~~~~~L~~~~~~--------------------~~~pi 296 (544)
..+++.|+||+|. |+++..+.+..+.+.+...... ....+
T Consensus 1701 ~~~~~~vFL~tD~qi~~e~FLE~IN~lL~sGEVP~LF~~dE~~~i~~~~r~~a~~~g~~~dt~~~l~~~Fi~rvr~NLHv 1780 (3245)
T 3vkg_A 1701 CKEEKICFIFDESNVLESSFLERMNTLLAGGEVPGLFEGEEFTALMHACKETAQRNGLILDSEEELYKYFTSQVRRNLHV 1780 (3245)
T ss_dssp TSCCCEEEEEEGGGCSSTHHHHHHHHHHHHSCCTTSSCTTTHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHTTTCCE
T ss_pred cCCCCEEEEEeccccccHHHHHHHHHHhccCCccccCCHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCEE
Confidence 2356888999854 4444444444444333322211 12256
Q ss_pred EEEEccCCCCCCCCccccchHHHHHHHhhcCceeEEecCCCHHHHHHHHHHHHH
Q 009072 297 AVVLTECGKADSVDSTAQSFEELQSILVDAGARKVALNPITNGSIKRTLSKICR 350 (544)
Q Consensus 297 IiI~t~~~~~~~~d~~~~~l~~l~~ll~r~~~~~I~f~p~s~~~i~~~L~~i~~ 350 (544)
|++.+-.+ +....+....+++++. |.+--|.+=+.+.+..+-.+.+.
T Consensus 1781 VL~mSPvg-----~~fR~R~r~fPaLvnc--ctIDWf~~Wp~eAL~~Va~~fl~ 1827 (3245)
T 3vkg_A 1781 VFTMNPAS-----PDFHNRSATSPALFNR--CVLDWFGEWSPEALFQVGSEFTR 1827 (3245)
T ss_dssp EEEECTTS-----TTTTC----CTHHHHH--SEEEEEESCCHHHHHHHHHHHTT
T ss_pred EEEECCCC-----HHHHHHHHHChHHhhC--ceeeecCCCCHHHHHHHHHHHHh
Confidence 66655432 2222333444677764 77888999998888877666554
No 211
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.84 E-value=0.00075 Score=64.90 Aligned_cols=29 Identities=31% Similarity=0.453 Sum_probs=26.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCeEE
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLGARLY 207 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg~~vi 207 (544)
..+.|.||+|+||||+++.|++.+|+..+
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~~lg~~~~ 56 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQNFGLQHL 56 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCCCE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 68999999999999999999999987643
No 212
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.84 E-value=0.016 Score=50.77 Aligned_cols=23 Identities=30% Similarity=0.521 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 009072 179 NVLVITGQAGVGKTATVRQIASH 201 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~e 201 (544)
..+++.|++|+||||+++.++..
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 47999999999999999999875
No 213
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.84 E-value=0.022 Score=49.90 Aligned_cols=23 Identities=35% Similarity=0.515 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 009072 179 NVLVITGQAGVGKTATVRQIASH 201 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~e 201 (544)
-.+++.|++|+||||++..+...
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999865
No 214
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.82 E-value=0.00079 Score=65.47 Aligned_cols=32 Identities=22% Similarity=0.378 Sum_probs=28.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH---hCCeEEEEe
Q 009072 179 NVLVITGQAGVGKTATVRQIASH---LGARLYEWD 210 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~e---lg~~viei~ 210 (544)
..++|+|+||+||||+++.|++. .|+.++.++
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~ 39 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLG 39 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEEC
Confidence 68999999999999999999998 788877443
No 215
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.82 E-value=0.023 Score=51.61 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 009072 179 NVLVITGQAGVGKTATVRQIASH 201 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~e 201 (544)
-.+++.|++|+||||++..+...
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999999876
No 216
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.81 E-value=0.00089 Score=62.06 Aligned_cols=31 Identities=26% Similarity=0.464 Sum_probs=28.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLGARLYEW 209 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg~~viei 209 (544)
..+.|+|++||||||+++.+++.+|++++..
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~lg~~vid~ 43 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNKYGAHVVNV 43 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCEEEEC
Confidence 5788999999999999999999999988753
No 217
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.81 E-value=0.00068 Score=63.12 Aligned_cols=29 Identities=31% Similarity=0.512 Sum_probs=25.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCeEEE
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLGARLYE 208 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg~~vie 208 (544)
..+.|.||+|+||||+++.++. +|+.++.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~-lg~~~id 31 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD-LGVPLVD 31 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT-TTCCEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHH-CCCcccc
Confidence 4689999999999999999998 8888764
No 218
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.80 E-value=0.0054 Score=58.38 Aligned_cols=39 Identities=21% Similarity=0.156 Sum_probs=29.3
Q ss_pred CCCCccEEEEEcCCCCcHHHHHHHHHHH----hCCeEEEEeCC
Q 009072 174 DKFSTNVLVITGQAGVGKTATVRQIASH----LGARLYEWDTP 212 (544)
Q Consensus 174 g~~~~~~lLL~GPpG~GKTtla~~lA~e----lg~~viei~~s 212 (544)
|-++...++|+|+||+|||+++..+|.+ .+..++.+...
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E 68 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE 68 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeeccc
Confidence 5566679999999999999999877643 35666655543
No 219
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.79 E-value=0.0016 Score=66.87 Aligned_cols=37 Identities=14% Similarity=0.191 Sum_probs=30.5
Q ss_pred CCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEe
Q 009072 174 DKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWD 210 (544)
Q Consensus 174 g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~ 210 (544)
+.+++..++|+||||+||||++++++..++..++.++
T Consensus 165 ~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~ 201 (377)
T 1svm_A 165 NIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVN 201 (377)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCS
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEe
Confidence 3344478999999999999999999999988766543
No 220
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=96.78 E-value=0.015 Score=52.14 Aligned_cols=23 Identities=30% Similarity=0.521 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 009072 179 NVLVITGQAGVGKTATVRQIASH 201 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~e 201 (544)
..++|.|++|+||||+++.++..
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 57999999999999999999865
No 221
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.78 E-value=0.0058 Score=58.12 Aligned_cols=37 Identities=19% Similarity=0.300 Sum_probs=30.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhC--CeEEEEeCCCch
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLG--ARLYEWDTPTPT 215 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg--~~viei~~s~~~ 215 (544)
..++|.||||+||||+++.|++.++ +.++....|...
T Consensus 27 ~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~~~~p~~~ 65 (229)
T 4eaq_A 27 AFITFEGPEGSGKTTVINEVYHRLVKDYDVIMTREPGGV 65 (229)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEECTTTTC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhcCCCceeecCCCCC
Confidence 6899999999999999999999986 677666555433
No 222
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.77 E-value=0.001 Score=64.34 Aligned_cols=29 Identities=31% Similarity=0.550 Sum_probs=27.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCeEE
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLGARLY 207 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg~~vi 207 (544)
..+.|.||+|+||||+++.||+.+|+.++
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~Lg~~~~ 56 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESLNWRLL 56 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTTCEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCCcC
Confidence 58999999999999999999999998765
No 223
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.74 E-value=0.028 Score=55.63 Aligned_cols=35 Identities=26% Similarity=0.380 Sum_probs=28.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh----CCeEEEEeCC
Q 009072 178 TNVLVITGQAGVGKTATVRQIASHL----GARLYEWDTP 212 (544)
Q Consensus 178 ~~~lLL~GPpG~GKTtla~~lA~el----g~~viei~~s 212 (544)
+..++|.||+|+||||++..+|..+ |..+.-+...
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D 143 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTD 143 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 4789999999999999999998764 5566655543
No 224
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=96.73 E-value=0.03 Score=49.92 Aligned_cols=23 Identities=30% Similarity=0.531 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 009072 179 NVLVITGQAGVGKTATVRQIASH 201 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~e 201 (544)
-.+++.|++|+||||+++.+...
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 47999999999999999999865
No 225
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.73 E-value=0.0007 Score=68.08 Aligned_cols=33 Identities=27% Similarity=0.487 Sum_probs=29.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeC
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLGARLYEWDT 211 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg~~viei~~ 211 (544)
+.++|.||+|+|||+++..||++++..++....
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds 73 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFPLEVINSDK 73 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSCEEEEECCS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCCCcEEcccc
Confidence 589999999999999999999999988765443
No 226
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=96.71 E-value=0.019 Score=51.65 Aligned_cols=24 Identities=38% Similarity=0.524 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 009072 179 NVLVITGQAGVGKTATVRQIASHL 202 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~el 202 (544)
-.+++.|++|+||||++..+....
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC
Confidence 469999999999999999998653
No 227
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.68 E-value=0.031 Score=48.71 Aligned_cols=24 Identities=38% Similarity=0.535 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 009072 179 NVLVITGQAGVGKTATVRQIASHL 202 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~el 202 (544)
-.+++.|++|+||||++..++...
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc
Confidence 358999999999999999998753
No 228
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=96.67 E-value=0.022 Score=52.10 Aligned_cols=23 Identities=30% Similarity=0.521 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 009072 179 NVLVITGQAGVGKTATVRQIASH 201 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~e 201 (544)
..++|.|++|+||||++..+...
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 57999999999999999999865
No 229
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.67 E-value=0.0012 Score=60.57 Aligned_cols=27 Identities=41% Similarity=0.749 Sum_probs=23.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCe
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLGAR 205 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg~~ 205 (544)
..++|.||+|+||||+++.++...+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~~~g~ 29 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQLDNS 29 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSSE
T ss_pred eEEEEECCCCCcHHHHHHHHhcccCCe
Confidence 578999999999999999999876553
No 230
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.67 E-value=0.00093 Score=62.26 Aligned_cols=27 Identities=30% Similarity=0.546 Sum_probs=24.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhC
Q 009072 177 STNVLVITGQAGVGKTATVRQIASHLG 203 (544)
Q Consensus 177 ~~~~lLL~GPpG~GKTtla~~lA~elg 203 (544)
+++.++|+||||+||||+++.|++.++
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 347899999999999999999999885
No 231
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.66 E-value=0.01 Score=72.32 Aligned_cols=40 Identities=20% Similarity=0.148 Sum_probs=32.4
Q ss_pred CCCCccEEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeCCC
Q 009072 174 DKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTPT 213 (544)
Q Consensus 174 g~~~~~~lLL~GPpG~GKTtla~~lA~el---g~~viei~~s~ 213 (544)
|.++...++|+||||+|||+++..+|.+. |..++.+....
T Consensus 379 Gl~~G~lilI~G~pGsGKTtLaLqia~~~a~~G~~vlyis~E~ 421 (2050)
T 3cmu_A 379 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 421 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTS
T ss_pred CccCCcEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEcCC
Confidence 45667899999999999999999998875 45677776554
No 232
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.66 E-value=0.0028 Score=58.81 Aligned_cols=49 Identities=20% Similarity=0.243 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHh---CCeEEEE
Q 009072 156 KKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEW 209 (544)
Q Consensus 156 ~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~el---g~~viei 209 (544)
+.++++.+++... ...++..+.|.||+|+||||+++.++..+ +..++..
T Consensus 5 ~~~~~l~~~~~~~-----~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~ 56 (201)
T 1rz3_A 5 DRIDFLCKTILAI-----KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVF 56 (201)
T ss_dssp HHHHHHHHHHHTS-----CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHHHHh-----ccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEe
Confidence 3455566655442 11223689999999999999999999876 6666544
No 233
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=96.66 E-value=0.025 Score=51.94 Aligned_cols=23 Identities=35% Similarity=0.401 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 009072 179 NVLVITGQAGVGKTATVRQIASH 201 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~e 201 (544)
..++|.|++|+||||+++.+...
T Consensus 25 ~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 25 RKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCcCHHHHHHHHHhC
Confidence 57999999999999999999875
No 234
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.65 E-value=0.00083 Score=62.62 Aligned_cols=25 Identities=20% Similarity=0.355 Sum_probs=23.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhC
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLG 203 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg 203 (544)
..++|+|+||+||||+++.|++.++
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~~l~ 35 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVEYLK 35 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 6899999999999999999999874
No 235
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.65 E-value=0.0012 Score=60.99 Aligned_cols=29 Identities=28% Similarity=0.459 Sum_probs=26.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCeEEE
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLGARLYE 208 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg~~vie 208 (544)
..+.|+|++|+||||+++.||+. |+.++.
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~-g~~~id 37 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW-GYPVLD 37 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT-TCCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHC-CCEEEc
Confidence 68999999999999999999998 888764
No 236
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.64 E-value=0.0014 Score=61.54 Aligned_cols=30 Identities=27% Similarity=0.508 Sum_probs=26.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLGARLYEW 209 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg~~viei 209 (544)
..+.|+|++|+||||+++.|++ +|+.++..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~-lg~~~id~ 34 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD-LGINVIDA 34 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH-TTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-cCCEEEEc
Confidence 5899999999999999999998 89887653
No 237
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=96.59 E-value=0.032 Score=50.43 Aligned_cols=23 Identities=39% Similarity=0.586 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 009072 179 NVLVITGQAGVGKTATVRQIASH 201 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~e 201 (544)
-.+++.|++|+||||++..++..
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 47999999999999999999875
No 238
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.58 E-value=0.0019 Score=61.61 Aligned_cols=30 Identities=27% Similarity=0.438 Sum_probs=27.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCeEEE
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLGARLYE 208 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg~~vie 208 (544)
..+.|.|++|+||||+++.||+.+|+.++.
T Consensus 17 ~~i~i~G~~gsGKst~~~~l~~~lg~~~~d 46 (236)
T 1q3t_A 17 IQIAIDGPASSGKSTVAKIIAKDFGFTYLD 46 (236)
T ss_dssp CEEEEECSSCSSHHHHHHHHHHHHCCEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 689999999999999999999999988764
No 239
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=96.58 E-value=0.0068 Score=56.22 Aligned_cols=24 Identities=29% Similarity=0.317 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 009072 179 NVLVITGQAGVGKTATVRQIASHL 202 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~el 202 (544)
+.+++.+|+|+|||.++-.++.++
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~~ 72 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKDH 72 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHHH
Confidence 569999999999999998887754
No 240
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.57 E-value=0.026 Score=50.91 Aligned_cols=23 Identities=30% Similarity=0.449 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 009072 179 NVLVITGQAGVGKTATVRQIASH 201 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~e 201 (544)
-.++|.|++|+||||+++.+...
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999999874
No 241
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=96.57 E-value=0.0048 Score=57.84 Aligned_cols=34 Identities=15% Similarity=0.090 Sum_probs=27.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeCC
Q 009072 179 NVLVITGQAGVGKTATVRQIASHL---GARLYEWDTP 212 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~el---g~~viei~~s 212 (544)
...+++||.|+||||.+..++..+ |..++-+...
T Consensus 29 ~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~ 65 (214)
T 2j9r_A 29 WIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPC 65 (214)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEec
Confidence 678899999999999998887654 7777777644
No 242
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.55 E-value=0.056 Score=51.21 Aligned_cols=24 Identities=33% Similarity=0.480 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 009072 179 NVLVITGQAGVGKTATVRQIASHL 202 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~el 202 (544)
..++|.|++|+||||++..+....
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHcCCC
Confidence 579999999999999999998653
No 243
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.55 E-value=0.0011 Score=61.98 Aligned_cols=34 Identities=26% Similarity=0.451 Sum_probs=27.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeCC
Q 009072 179 NVLVITGQAGVGKTATVRQIASHL---GARLYEWDTP 212 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~el---g~~viei~~s 212 (544)
..++|+|+||+||||+++.|++.+ ++.+..+..+
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~~~~~ 46 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFP 46 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEeeCC
Confidence 689999999999999999999986 5565544433
No 244
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=96.54 E-value=0.0017 Score=60.53 Aligned_cols=29 Identities=24% Similarity=0.464 Sum_probs=27.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCeEE
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLGARLY 207 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg~~vi 207 (544)
.++.|.||+||||||+++.||+.+|++++
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg~~~~ 35 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYNIPLY 35 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTCCEE
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhCcCEE
Confidence 58999999999999999999999999987
No 245
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.53 E-value=0.0018 Score=60.73 Aligned_cols=30 Identities=23% Similarity=0.409 Sum_probs=27.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCeEEE
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLGARLYE 208 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg~~vie 208 (544)
..+.|+|++|+||||+++.|++.+|+.++.
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g~~~~~ 33 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELSMIYVD 33 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCceec
Confidence 579999999999999999999999988765
No 246
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.53 E-value=0.0013 Score=61.48 Aligned_cols=25 Identities=24% Similarity=0.434 Sum_probs=23.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhC
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLG 203 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg 203 (544)
..++|.||+|+||||+++.|+..+.
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred cEEEEECcCCCCHHHHHHHHHhhCC
Confidence 6899999999999999999999875
No 247
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.50 E-value=0.0015 Score=64.62 Aligned_cols=29 Identities=21% Similarity=0.346 Sum_probs=25.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh-CCeEE
Q 009072 179 NVLVITGQAGVGKTATVRQIASHL-GARLY 207 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~el-g~~vi 207 (544)
..++|.||||+||||+++.|++.+ ++.++
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~~~~~~i 32 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNI 32 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCCcEEe
Confidence 579999999999999999999974 76655
No 248
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=96.49 E-value=0.031 Score=50.13 Aligned_cols=23 Identities=39% Similarity=0.546 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 009072 179 NVLVITGQAGVGKTATVRQIASH 201 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~e 201 (544)
-.++|.|++|+||||+++.+...
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 57899999999999999999865
No 249
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.48 E-value=0.0014 Score=61.03 Aligned_cols=30 Identities=23% Similarity=0.444 Sum_probs=26.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh-CCeEEE
Q 009072 179 NVLVITGQAGVGKTATVRQIASHL-GARLYE 208 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~el-g~~vie 208 (544)
..+.|+||+|+||||+++.|++.+ ++.++.
T Consensus 22 ~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~ 52 (207)
T 2qt1_A 22 FIIGISGVTNSGKTTLAKNLQKHLPNCSVIS 52 (207)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTTSTTEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCcEEEe
Confidence 688999999999999999999988 666554
No 250
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.47 E-value=0.0017 Score=65.39 Aligned_cols=31 Identities=23% Similarity=0.351 Sum_probs=27.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLGARLYEW 209 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg~~viei 209 (544)
+.++|.||+|+||||++..||+.++..++..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~ 38 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISG 38 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEEC
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceecc
Confidence 5899999999999999999999999665543
No 251
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=96.46 E-value=0.029 Score=51.04 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 009072 179 NVLVITGQAGVGKTATVRQIASH 201 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~e 201 (544)
-.+++.|++|+||||++..+...
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 47999999999999999999865
No 252
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.44 E-value=0.002 Score=62.16 Aligned_cols=27 Identities=22% Similarity=0.432 Sum_probs=25.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCe
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLGAR 205 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg~~ 205 (544)
..+.|+||+|+||||+++.|++.+|+.
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~lg~~ 49 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLLGQN 49 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhhhh
Confidence 689999999999999999999999976
No 253
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.42 E-value=0.0021 Score=63.31 Aligned_cols=30 Identities=33% Similarity=0.569 Sum_probs=26.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLGARLYEW 209 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg~~viei 209 (544)
..+.|+|++|+||||+++.|+ ++|+.++..
T Consensus 76 ~iI~I~G~~GSGKSTva~~La-~lg~~~id~ 105 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLK-NLGAYIIDS 105 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHH-HHTCEEEEH
T ss_pred EEEEEECCCCCCHHHHHHHHH-HCCCcEEeh
Confidence 689999999999999999999 689887653
No 254
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.42 E-value=0.0017 Score=60.18 Aligned_cols=24 Identities=29% Similarity=0.533 Sum_probs=22.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 009072 179 NVLVITGQAGVGKTATVRQIASHL 202 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~el 202 (544)
..+.|.||+|+||||+++.|+..+
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 689999999999999999999987
No 255
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.42 E-value=0.0016 Score=59.66 Aligned_cols=25 Identities=24% Similarity=0.551 Sum_probs=22.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhC
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLG 203 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg 203 (544)
+.+.|.||+|+||||+++.|+..+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5789999999999999999998764
No 256
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.42 E-value=0.0019 Score=59.78 Aligned_cols=25 Identities=36% Similarity=0.680 Sum_probs=23.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhC
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLG 203 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg 203 (544)
..+.|.||+|+||||+++.|+..+.
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhCC
Confidence 6899999999999999999999863
No 257
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.40 E-value=0.0014 Score=68.36 Aligned_cols=29 Identities=24% Similarity=0.338 Sum_probs=26.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCeEE
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLGARLY 207 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg~~vi 207 (544)
..++|+||||+||||+++.+++.+++.++
T Consensus 259 ~lIil~G~pGSGKSTla~~L~~~~~~~~i 287 (416)
T 3zvl_A 259 EVVVAVGFPGAGKSTFIQEHLVSAGYVHV 287 (416)
T ss_dssp CEEEEESCTTSSHHHHHHHHTGGGTCEEC
T ss_pred EEEEEECCCCCCHHHHHHHHHHhcCcEEE
Confidence 78999999999999999999999987765
No 258
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.39 E-value=0.038 Score=48.37 Aligned_cols=23 Identities=39% Similarity=0.528 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 009072 179 NVLVITGQAGVGKTATVRQIASH 201 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~e 201 (544)
-.+++.|++|+||||+++.+...
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999874
No 259
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.39 E-value=0.0019 Score=58.98 Aligned_cols=32 Identities=34% Similarity=0.439 Sum_probs=26.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh---CCeEEEE
Q 009072 178 TNVLVITGQAGVGKTATVRQIASHL---GARLYEW 209 (544)
Q Consensus 178 ~~~lLL~GPpG~GKTtla~~lA~el---g~~viei 209 (544)
+..++|.|+||+||||+++.+|+.+ |+.+..+
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~ 47 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVL 47 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence 3689999999999999999999987 4444444
No 260
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.38 E-value=0.034 Score=48.99 Aligned_cols=21 Identities=24% Similarity=0.564 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 009072 180 VLVITGQAGVGKTATVRQIAS 200 (544)
Q Consensus 180 ~lLL~GPpG~GKTtla~~lA~ 200 (544)
.+++.|++|+||||+++.++.
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999999864
No 261
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=96.37 E-value=0.027 Score=51.05 Aligned_cols=23 Identities=39% Similarity=0.329 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 009072 179 NVLVITGQAGVGKTATVRQIASH 201 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~e 201 (544)
-.++|.|++|+||||+++.+...
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHcC
Confidence 47999999999999999999864
No 262
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.36 E-value=0.014 Score=51.47 Aligned_cols=21 Identities=33% Similarity=0.593 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 009072 180 VLVITGQAGVGKTATVRQIAS 200 (544)
Q Consensus 180 ~lLL~GPpG~GKTtla~~lA~ 200 (544)
.++|.|++|+||||+++.+..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 689999999999999998863
No 263
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=96.36 E-value=0.027 Score=51.08 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 009072 179 NVLVITGQAGVGKTATVRQIASH 201 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~e 201 (544)
-.++|.|++|+||||+++.+...
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCcHHHHHHHHHhC
Confidence 47999999999999999998865
No 264
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=96.32 E-value=0.035 Score=50.23 Aligned_cols=23 Identities=22% Similarity=0.413 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 009072 179 NVLVITGQAGVGKTATVRQIASH 201 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~e 201 (544)
..++|.|++|+||||++..+...
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 47999999999999999999864
No 265
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.30 E-value=0.054 Score=47.46 Aligned_cols=23 Identities=30% Similarity=0.450 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 009072 179 NVLVITGQAGVGKTATVRQIASH 201 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~e 201 (544)
-.+++.|++|+||||++..+...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999864
No 266
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=96.29 E-value=0.067 Score=48.34 Aligned_cols=24 Identities=17% Similarity=0.250 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 009072 179 NVLVITGQAGVGKTATVRQIASHL 202 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~el 202 (544)
-.+++.|++|+||||+++.+....
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSCGG
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 579999999999999999987654
No 267
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=96.29 E-value=0.066 Score=49.13 Aligned_cols=23 Identities=39% Similarity=0.566 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 009072 179 NVLVITGQAGVGKTATVRQIASH 201 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~e 201 (544)
-.++|.|++|+||||++..+...
T Consensus 30 ~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 30 FKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhhC
Confidence 46999999999999999999764
No 268
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.29 E-value=0.032 Score=50.53 Aligned_cols=23 Identities=26% Similarity=0.283 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 009072 179 NVLVITGQAGVGKTATVRQIASH 201 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~e 201 (544)
-.++|.|++|+||||+++.++..
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 57999999999999999888765
No 269
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.29 E-value=0.021 Score=54.25 Aligned_cols=23 Identities=39% Similarity=0.627 Sum_probs=19.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 009072 179 NVLVITGQAGVGKTATVRQIASH 201 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~e 201 (544)
+.+++.||+||||||++..++-+
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~~~ 99 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFILD 99 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEeCCCCCcHHhHHHHHhc
Confidence 68999999999999987666543
No 270
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.28 E-value=0.02 Score=53.24 Aligned_cols=24 Identities=21% Similarity=0.411 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 009072 179 NVLVITGQAGVGKTATVRQIASHL 202 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~el 202 (544)
..++|.|++|+||||++..++...
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 579999999999999999999865
No 271
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.27 E-value=0.0026 Score=59.05 Aligned_cols=26 Identities=27% Similarity=0.461 Sum_probs=23.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhC
Q 009072 178 TNVLVITGQAGVGKTATVRQIASHLG 203 (544)
Q Consensus 178 ~~~lLL~GPpG~GKTtla~~lA~elg 203 (544)
++.++|.||+|+||||+++.|++...
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 47899999999999999999998865
No 272
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.27 E-value=0.0059 Score=60.33 Aligned_cols=25 Identities=36% Similarity=0.458 Sum_probs=23.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhC
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLG 203 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg 203 (544)
..+.|.||+|+||||+++.|+..++
T Consensus 32 ~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 32 LFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 6899999999999999999999875
No 273
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=96.26 E-value=0.0029 Score=65.93 Aligned_cols=25 Identities=28% Similarity=0.496 Sum_probs=21.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 009072 177 STNVLVITGQAGVGKTATVRQIASH 201 (544)
Q Consensus 177 ~~~~lLL~GPpG~GKTtla~~lA~e 201 (544)
..+..++.|+||||||+++..++..
T Consensus 160 ~~~v~~I~G~aGsGKTt~I~~~~~~ 184 (446)
T 3vkw_A 160 SAKVVLVDGVPGCGKTKEILSRVNF 184 (446)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHCCT
T ss_pred cccEEEEEcCCCCCHHHHHHHHhcc
Confidence 3478999999999999999887753
No 274
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.26 E-value=0.049 Score=53.78 Aligned_cols=35 Identities=29% Similarity=0.362 Sum_probs=27.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeCC
Q 009072 178 TNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTP 212 (544)
Q Consensus 178 ~~~lLL~GPpG~GKTtla~~lA~el---g~~viei~~s 212 (544)
+..+.+.||+|+||||++..+|..+ +..+.-+...
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d 135 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAAD 135 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCC
Confidence 4688899999999999999999865 5666655543
No 275
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=96.24 E-value=0.039 Score=49.03 Aligned_cols=23 Identities=39% Similarity=0.566 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 009072 179 NVLVITGQAGVGKTATVRQIASH 201 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~e 201 (544)
..+++.|++|+||||+++.+...
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 57999999999999999999876
No 276
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.22 E-value=0.065 Score=53.55 Aligned_cols=35 Identities=23% Similarity=0.442 Sum_probs=28.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeCC
Q 009072 178 TNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTP 212 (544)
Q Consensus 178 ~~~lLL~GPpG~GKTtla~~lA~el---g~~viei~~s 212 (544)
++.++++||+|+||||++..+|..+ |..+.-+...
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D 142 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAAD 142 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 4789999999999999999999875 6677665543
No 277
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.21 E-value=0.0024 Score=59.26 Aligned_cols=25 Identities=20% Similarity=0.513 Sum_probs=22.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhC
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLG 203 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg 203 (544)
+.+.|.||+|+||||+++.++..+.
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCc
Confidence 6799999999999999999998763
No 278
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.21 E-value=0.0026 Score=59.24 Aligned_cols=29 Identities=34% Similarity=0.483 Sum_probs=25.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhC--CeEE
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLG--ARLY 207 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg--~~vi 207 (544)
..+.|.||+|+||||+++.++..++ +.++
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v 37 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALARTLGERVALL 37 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHGGGEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCCCeEEE
Confidence 6799999999999999999999987 5544
No 279
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.20 E-value=0.0026 Score=59.46 Aligned_cols=32 Identities=22% Similarity=0.363 Sum_probs=26.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhC----CeEEEEe
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLG----ARLYEWD 210 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg----~~viei~ 210 (544)
..++|.|++|+||||+++.|++.++ ++++.++
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~ 61 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLD 61 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEEC
Confidence 6899999999999999999999774 4555554
No 280
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.20 E-value=0.12 Score=45.68 Aligned_cols=23 Identities=22% Similarity=0.525 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 009072 179 NVLVITGQAGVGKTATVRQIASH 201 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~e 201 (544)
-.+++.|++|+||||++..+...
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 47999999999999999999864
No 281
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=96.19 E-value=0.0058 Score=67.38 Aligned_cols=41 Identities=27% Similarity=0.383 Sum_probs=29.9
Q ss_pred ccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 009072 152 AVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL 202 (544)
Q Consensus 152 v~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~el 202 (544)
-.++.+.+.|...|.. ....|+.||||||||+++-.+..++
T Consensus 189 ~LN~~Q~~AV~~al~~----------~~~~lI~GPPGTGKT~ti~~~I~~l 229 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQ----------KELAIIHGPPGTGKTTTVVEIILQA 229 (646)
T ss_dssp TCCHHHHHHHHHHHHC----------SSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhcC----------CCceEEECCCCCCHHHHHHHHHHHH
Confidence 3577777777776642 1479999999999998876555543
No 282
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=96.16 E-value=0.0036 Score=59.37 Aligned_cols=30 Identities=23% Similarity=0.501 Sum_probs=27.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCeEEE
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLGARLYE 208 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg~~vie 208 (544)
.++.|.|++||||||+++.||+.+|++++.
T Consensus 15 ~iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 15 LIITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 589999999999999999999999999863
No 283
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.16 E-value=0.05 Score=50.15 Aligned_cols=31 Identities=19% Similarity=0.263 Sum_probs=26.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh---CCeEEEE
Q 009072 179 NVLVITGQAGVGKTATVRQIASHL---GARLYEW 209 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~el---g~~viei 209 (544)
..+++++++|.||||+|-.+|-.. |+.+.-+
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~v 62 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVV 62 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 579999999999999999887664 7887766
No 284
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.15 E-value=0.043 Score=49.75 Aligned_cols=24 Identities=33% Similarity=0.407 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 009072 179 NVLVITGQAGVGKTATVRQIASHL 202 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~el 202 (544)
-.++|.|++|+||||+++.+...-
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCcCHHHHHHHHhcCC
Confidence 469999999999999999998764
No 285
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=96.15 E-value=0.048 Score=49.86 Aligned_cols=23 Identities=30% Similarity=0.426 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 009072 179 NVLVITGQAGVGKTATVRQIASH 201 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~e 201 (544)
-.++|.|++|+||||++..+...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999998764
No 286
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.14 E-value=0.092 Score=46.10 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 009072 179 NVLVITGQAGVGKTATVRQIASH 201 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~e 201 (544)
..+++.|++|+||||++..+...
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 57999999999999999999764
No 287
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=96.13 E-value=0.054 Score=49.07 Aligned_cols=23 Identities=30% Similarity=0.557 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 009072 179 NVLVITGQAGVGKTATVRQIASH 201 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~e 201 (544)
-.++|.|++|+||||++..+...
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 47999999999999999999875
No 288
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.10 E-value=0.0058 Score=63.56 Aligned_cols=58 Identities=17% Similarity=0.320 Sum_probs=40.7
Q ss_pred CCCcchhccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhC---CeEEEEeC
Q 009072 145 PRSLEELAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLG---ARLYEWDT 211 (544)
Q Consensus 145 P~~~~dLv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg---~~viei~~ 211 (544)
+-++++|.........|...+. .+...++|.||+|+||||++++++..+. ..++....
T Consensus 143 ~~~l~~Lg~~~~~~~~L~~l~~---------~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed 203 (418)
T 1p9r_A 143 RLDLHSLGMTAHNHDNFRRLIK---------RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVED 203 (418)
T ss_dssp CCCGGGSCCCHHHHHHHHHHHT---------SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEES
T ss_pred CCCHHHcCCCHHHHHHHHHHHH---------hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecc
Confidence 4567888777766555555431 1226899999999999999999999874 34544443
No 289
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.09 E-value=0.036 Score=48.59 Aligned_cols=23 Identities=22% Similarity=0.478 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 009072 179 NVLVITGQAGVGKTATVRQIASH 201 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~e 201 (544)
-.+++.|++|+||||++..+...
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 46899999999999999999875
No 290
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=96.07 E-value=0.035 Score=49.31 Aligned_cols=23 Identities=30% Similarity=0.429 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 009072 179 NVLVITGQAGVGKTATVRQIASH 201 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~e 201 (544)
-.+++.|++|+||||++..++..
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999864
No 291
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=96.07 E-value=0.062 Score=48.04 Aligned_cols=23 Identities=30% Similarity=0.543 Sum_probs=10.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 009072 179 NVLVITGQAGVGKTATVRQIASH 201 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~e 201 (544)
-.++|.|++|+||||++..+...
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEECCCCC------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 47999999999999999998754
No 292
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.05 E-value=0.071 Score=48.49 Aligned_cols=23 Identities=43% Similarity=0.576 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 009072 179 NVLVITGQAGVGKTATVRQIASH 201 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~e 201 (544)
-.+++.|++|+||||+++.+...
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 57999999999999999999875
No 293
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.04 E-value=0.0034 Score=58.62 Aligned_cols=25 Identities=24% Similarity=0.542 Sum_probs=23.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhC
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLG 203 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg 203 (544)
..+.|.||+|+||||+++.|+..+.
T Consensus 23 ~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 23 QLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHh
Confidence 6899999999999999999999875
No 294
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=96.01 E-value=0.074 Score=47.09 Aligned_cols=24 Identities=29% Similarity=0.479 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 009072 179 NVLVITGQAGVGKTATVRQIASHL 202 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~el 202 (544)
-.+++.|++|+||||+++.+....
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 579999999999999999998753
No 295
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=96.01 E-value=0.012 Score=55.04 Aligned_cols=34 Identities=15% Similarity=0.154 Sum_probs=23.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH---hCCeEEEEeCC
Q 009072 179 NVLVITGQAGVGKTATVRQIASH---LGARLYEWDTP 212 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~e---lg~~viei~~s 212 (544)
.+.+++||.|+||||.+-..+.. .+..++-+...
T Consensus 29 ~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp~ 65 (219)
T 3e2i_A 29 WIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPA 65 (219)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEEec
Confidence 68999999999999954333433 36676666543
No 296
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.00 E-value=0.11 Score=46.18 Aligned_cols=24 Identities=25% Similarity=0.436 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 009072 179 NVLVITGQAGVGKTATVRQIASHL 202 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~el 202 (544)
-.+++.|++|+||||++..+...-
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 479999999999999999998653
No 297
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.00 E-value=0.048 Score=47.80 Aligned_cols=23 Identities=39% Similarity=0.551 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 009072 179 NVLVITGQAGVGKTATVRQIASH 201 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~e 201 (544)
-.+++.|++|+||||++..+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999865
No 298
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.00 E-value=0.012 Score=59.99 Aligned_cols=25 Identities=20% Similarity=0.377 Sum_probs=22.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhC
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLG 203 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg 203 (544)
..+-|.||+|+||||++++++.-+.
T Consensus 55 ei~~IiGpnGaGKSTLlr~i~GL~~ 79 (366)
T 3tui_C 55 QIYGVIGASGAGKSTLIRCVNLLER 79 (366)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CEEEEEcCCCchHHHHHHHHhcCCC
Confidence 6899999999999999999998653
No 299
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.99 E-value=0.0039 Score=57.75 Aligned_cols=28 Identities=36% Similarity=0.497 Sum_probs=24.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCeEE
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLGARLY 207 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg~~vi 207 (544)
+.++|.||+|+|||++|..+++..+ .++
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g~-~iI 62 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRGH-RLI 62 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTTC-EEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHhCC-eEE
Confidence 6799999999999999999998865 443
No 300
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=95.98 E-value=0.15 Score=45.87 Aligned_cols=23 Identities=17% Similarity=0.427 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 009072 179 NVLVITGQAGVGKTATVRQIASH 201 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~e 201 (544)
..+++.|++|+||||++..+...
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 57999999999999999999765
No 301
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=95.97 E-value=0.09 Score=46.07 Aligned_cols=24 Identities=21% Similarity=0.412 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 009072 179 NVLVITGQAGVGKTATVRQIASHL 202 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~el 202 (544)
-.+++.|++|+||||+++.+....
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 469999999999999999998763
No 302
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=95.97 E-value=0.1 Score=47.20 Aligned_cols=23 Identities=17% Similarity=0.491 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 009072 179 NVLVITGQAGVGKTATVRQIASH 201 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~e 201 (544)
..+++.|++|+||||++..+...
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 57999999999999999999754
No 303
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.93 E-value=0.0097 Score=55.92 Aligned_cols=35 Identities=23% Similarity=0.375 Sum_probs=29.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeCCC
Q 009072 179 NVLVITGQAGVGKTATVRQIASHL---GARLYEWDTPT 213 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~el---g~~viei~~s~ 213 (544)
..++|.||+|+||||.++.|++.+ |+.++....|.
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~~p~ 44 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTREPG 44 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEESSC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccccCCC
Confidence 689999999999999999999987 57777666554
No 304
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=95.92 E-value=0.074 Score=48.05 Aligned_cols=23 Identities=30% Similarity=0.547 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 009072 179 NVLVITGQAGVGKTATVRQIASH 201 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~e 201 (544)
-.++|.|++|+||||+++.+...
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 47999999999999999999875
No 305
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=95.92 E-value=0.068 Score=46.89 Aligned_cols=23 Identities=22% Similarity=0.508 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 009072 179 NVLVITGQAGVGKTATVRQIASH 201 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~e 201 (544)
-.+++.|++|+||||++..+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 36899999999999999999864
No 306
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.92 E-value=0.0052 Score=58.39 Aligned_cols=31 Identities=23% Similarity=0.331 Sum_probs=27.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLGARLYEW 209 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg~~viei 209 (544)
-.+-|.||||+||||.++.|++.+|+..+..
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~g~~~is~ 39 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKFGIPQIST 39 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCCEECH
T ss_pred cceeeECCCCCCHHHHHHHHHHHhCCCeeec
Confidence 3588999999999999999999999887643
No 307
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=95.92 E-value=0.16 Score=48.55 Aligned_cols=24 Identities=33% Similarity=0.545 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 009072 179 NVLVITGQAGVGKTATVRQIASHL 202 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~el 202 (544)
-.++|.|+||+||||++..+...-
T Consensus 22 l~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 22 RRLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp EEEEEESSTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCcHHHHHHHHhCCC
Confidence 579999999999999999987653
No 308
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.92 E-value=0.0048 Score=58.34 Aligned_cols=28 Identities=11% Similarity=0.342 Sum_probs=24.2
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhC
Q 009072 176 FSTNVLVITGQAGVGKTATVRQIASHLG 203 (544)
Q Consensus 176 ~~~~~lLL~GPpG~GKTtla~~lA~elg 203 (544)
++...+.|.||+|+||||++++++..+.
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 3447899999999999999999999875
No 309
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=95.91 E-value=0.032 Score=63.71 Aligned_cols=23 Identities=30% Similarity=0.354 Sum_probs=20.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHH
Q 009072 178 TNVLVITGQAGVGKTATVRQIAS 200 (544)
Q Consensus 178 ~~~lLL~GPpG~GKTtla~~lA~ 200 (544)
+..++|+||.|+||||+++.+|-
T Consensus 662 g~i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 662 QMFHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp BCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999853
No 310
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.90 E-value=0.24 Score=52.24 Aligned_cols=31 Identities=32% Similarity=0.584 Sum_probs=25.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh---CCeEEE
Q 009072 178 TNVLVITGQAGVGKTATVRQIASHL---GARLYE 208 (544)
Q Consensus 178 ~~~lLL~GPpG~GKTtla~~lA~el---g~~vie 208 (544)
+..+.|.||+|+||||+++.||..+ +..+.-
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l 326 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQFEQQGKSVML 326 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEE
Confidence 3689999999999999999999875 445443
No 311
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.90 E-value=0.005 Score=57.40 Aligned_cols=25 Identities=32% Similarity=0.619 Sum_probs=23.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhC
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLG 203 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg 203 (544)
..+.|.||+|+||||++++++..+.
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 6899999999999999999999874
No 312
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=95.88 E-value=0.068 Score=49.72 Aligned_cols=24 Identities=21% Similarity=0.241 Sum_probs=19.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 009072 179 NVLVITGQAGVGKTATVRQIASHL 202 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~el 202 (544)
+.+++.+|+|+|||.++-..+-+.
T Consensus 52 ~~~li~~~TGsGKT~~~~~~~~~~ 75 (220)
T 1t6n_A 52 MDVLCQAKSGMGKTAVFVLATLQQ 75 (220)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEECCCCCchhhhhhHHHHHh
Confidence 569999999999999876666554
No 313
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.86 E-value=0.0025 Score=59.33 Aligned_cols=24 Identities=25% Similarity=0.540 Sum_probs=22.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhC
Q 009072 180 VLVITGQAGVGKTATVRQIASHLG 203 (544)
Q Consensus 180 ~lLL~GPpG~GKTtla~~lA~elg 203 (544)
.++|.||+|+||||+++.|++.++
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999999984
No 314
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.86 E-value=0.0047 Score=58.24 Aligned_cols=24 Identities=33% Similarity=0.631 Sum_probs=22.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 009072 179 NVLVITGQAGVGKTATVRQIASHL 202 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~el 202 (544)
..+.|.||+|+||||+++.|+..+
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 679999999999999999999976
No 315
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=95.86 E-value=0.032 Score=51.11 Aligned_cols=24 Identities=25% Similarity=0.470 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 009072 179 NVLVITGQAGVGKTATVRQIASHL 202 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~el 202 (544)
-.++|.||+|+||||+++.++...
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCC
Confidence 468999999999999999999763
No 316
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=95.85 E-value=0.019 Score=50.87 Aligned_cols=23 Identities=35% Similarity=0.521 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 009072 179 NVLVITGQAGVGKTATVRQIASH 201 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~e 201 (544)
-.++|.|++|+||||+++.+...
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEECCCCccHHHHHHHHhcC
Confidence 46999999999999999998754
No 317
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=95.83 E-value=0.0092 Score=56.68 Aligned_cols=36 Identities=22% Similarity=0.394 Sum_probs=27.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh-------CCeEEEEeCCC
Q 009072 178 TNVLVITGQAGVGKTATVRQIASHL-------GARLYEWDTPT 213 (544)
Q Consensus 178 ~~~lLL~GPpG~GKTtla~~lA~el-------g~~viei~~s~ 213 (544)
+..++|.||+|+||||.++.|++.+ |+.++....|.
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~rep~ 67 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTREPG 67 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEESSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeecCCC
Confidence 3689999999999999999999987 77776666554
No 318
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.83 E-value=0.0046 Score=55.84 Aligned_cols=20 Identities=25% Similarity=0.591 Sum_probs=18.3
Q ss_pred cEEEEEcCCCCcHHHHHHHH
Q 009072 179 NVLVITGQAGVGKTATVRQI 198 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~l 198 (544)
..+.|.||+|+||||+++++
T Consensus 10 ei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp EEEEEECCTTSCHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHH
Confidence 68999999999999999964
No 319
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=95.82 E-value=0.044 Score=62.42 Aligned_cols=23 Identities=35% Similarity=0.547 Sum_probs=20.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHH
Q 009072 178 TNVLVITGQAGVGKTATVRQIAS 200 (544)
Q Consensus 178 ~~~lLL~GPpG~GKTtla~~lA~ 200 (544)
...++|+||.|+||||+.+.++.
T Consensus 673 g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 673 ERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp CCEEEEESCCCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCchHHHHHHHHH
Confidence 46899999999999999999874
No 320
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.81 E-value=0.16 Score=50.14 Aligned_cols=35 Identities=26% Similarity=0.377 Sum_probs=28.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeCC
Q 009072 178 TNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTP 212 (544)
Q Consensus 178 ~~~lLL~GPpG~GKTtla~~lA~el---g~~viei~~s 212 (544)
+..+++.||+|+||||++..+|..+ |..+.-+...
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D 135 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGAD 135 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 3688999999999999999999776 6777666554
No 321
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=95.81 E-value=0.039 Score=50.07 Aligned_cols=23 Identities=30% Similarity=0.512 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 009072 179 NVLVITGQAGVGKTATVRQIASH 201 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~e 201 (544)
-.++|.|++|+||||+++.+...
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 47999999999999999999865
No 322
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.79 E-value=0.0063 Score=54.35 Aligned_cols=24 Identities=25% Similarity=0.473 Sum_probs=22.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 009072 179 NVLVITGQAGVGKTATVRQIASHL 202 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~el 202 (544)
..+.|.||.|+||||++++++..+
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 689999999999999999999987
No 323
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=95.77 E-value=0.092 Score=47.36 Aligned_cols=23 Identities=30% Similarity=0.426 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 009072 179 NVLVITGQAGVGKTATVRQIASH 201 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~e 201 (544)
-.++|.|++|+||||++..++..
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 47999999999999999999875
No 324
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=95.77 E-value=0.04 Score=49.65 Aligned_cols=23 Identities=30% Similarity=0.489 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 009072 179 NVLVITGQAGVGKTATVRQIASH 201 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~e 201 (544)
..+++.|++|+||||+++.++..
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 57999999999999999998765
No 325
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=95.75 E-value=0.098 Score=46.77 Aligned_cols=23 Identities=26% Similarity=0.499 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 009072 179 NVLVITGQAGVGKTATVRQIASH 201 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~e 201 (544)
-.+++.|++|+||||+++.+...
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 47999999999999999999865
No 326
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=95.75 E-value=0.05 Score=49.14 Aligned_cols=23 Identities=26% Similarity=0.543 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 009072 179 NVLVITGQAGVGKTATVRQIASH 201 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~e 201 (544)
-.++|.|++|+||||++..+...
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 47999999999999999999875
No 327
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.73 E-value=0.09 Score=45.88 Aligned_cols=23 Identities=17% Similarity=0.296 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 009072 180 VLVITGQAGVGKTATVRQIASHL 202 (544)
Q Consensus 180 ~lLL~GPpG~GKTtla~~lA~el 202 (544)
.+++.|++|+|||+++..+...-
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999998653
No 328
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.73 E-value=0.016 Score=58.28 Aligned_cols=33 Identities=30% Similarity=0.447 Sum_probs=26.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh---CCeEEEE
Q 009072 177 STNVLVITGQAGVGKTATVRQIASHL---GARLYEW 209 (544)
Q Consensus 177 ~~~~lLL~GPpG~GKTtla~~lA~el---g~~viei 209 (544)
++..+.|.||+|+||||+++.+|..+ +..+.-.
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~ 163 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIA 163 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEE
Confidence 34799999999999999999999875 4454433
No 329
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.71 E-value=0.015 Score=58.14 Aligned_cols=25 Identities=32% Similarity=0.523 Sum_probs=23.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhC
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLG 203 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg 203 (544)
..+-|.||+||||||+++.|+..++
T Consensus 93 ~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 93 YIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhc
Confidence 5899999999999999999999875
No 330
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=95.71 E-value=0.014 Score=55.20 Aligned_cols=34 Identities=15% Similarity=0.099 Sum_probs=25.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH---hCCeEEEEeC
Q 009072 178 TNVLVITGQAGVGKTATVRQIASH---LGARLYEWDT 211 (544)
Q Consensus 178 ~~~lLL~GPpG~GKTtla~~lA~e---lg~~viei~~ 211 (544)
....+++||.|+||||.+-..+.. .|..++-+..
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp 55 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKY 55 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEee
Confidence 378999999999999887666554 3667766653
No 331
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.69 E-value=0.0062 Score=59.18 Aligned_cols=24 Identities=25% Similarity=0.624 Sum_probs=22.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 009072 179 NVLVITGQAGVGKTATVRQIASHL 202 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~el 202 (544)
..++|.||+|+||||++++++..+
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHHHhC
Confidence 689999999999999999999875
No 332
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=95.68 E-value=0.14 Score=46.61 Aligned_cols=23 Identities=26% Similarity=0.533 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 009072 179 NVLVITGQAGVGKTATVRQIASH 201 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~e 201 (544)
-.++|.|++|+||||++..+...
T Consensus 29 ~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 57999999999999999999864
No 333
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=95.68 E-value=0.12 Score=45.20 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 009072 179 NVLVITGQAGVGKTATVRQIASH 201 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~e 201 (544)
-.+++.|++|+||||+++.+...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 47999999999999999999865
No 334
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=95.65 E-value=0.037 Score=51.26 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 009072 179 NVLVITGQAGVGKTATVRQIASH 201 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~e 201 (544)
-.++|.|++|+||||++..+...
T Consensus 26 ~ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 26 IKLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 46999999999999999999854
No 335
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=95.61 E-value=0.032 Score=51.07 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=5.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 009072 179 NVLVITGQAGVGKTATVRQIASH 201 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~e 201 (544)
-.++|.|++|+||||++..+...
T Consensus 21 ~~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 21 CKVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEEC-----------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 47999999999999999988765
No 336
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.61 E-value=0.01 Score=58.97 Aligned_cols=34 Identities=21% Similarity=0.391 Sum_probs=28.2
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 009072 176 FSTNVLVITGQAGVGKTATVRQIASHLGARLYEW 209 (544)
Q Consensus 176 ~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei 209 (544)
+++..+.|.||+|+||||++++|+..+...++-+
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~~G~I~~~ 157 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFLGGSVLSF 157 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHHTCEEECG
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhcCceEEEE
Confidence 3447899999999999999999999986666533
No 337
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.59 E-value=0.0074 Score=57.82 Aligned_cols=27 Identities=22% Similarity=0.428 Sum_probs=24.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCe
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLGAR 205 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg~~ 205 (544)
..+-|.||+|+||||+++.|+..+|..
T Consensus 26 ~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 26 FLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 579999999999999999999988754
No 338
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.59 E-value=0.012 Score=53.03 Aligned_cols=32 Identities=25% Similarity=0.273 Sum_probs=26.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEe
Q 009072 179 NVLVITGQAGVGKTATVRQIASHL---GARLYEWD 210 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~el---g~~viei~ 210 (544)
+.+.|.|++|+||||++..++..+ |+.+..+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik 39 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK 39 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence 689999999999999999999875 56665554
No 339
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=95.57 E-value=0.011 Score=64.43 Aligned_cols=32 Identities=31% Similarity=0.474 Sum_probs=29.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEe
Q 009072 179 NVLVITGQAGVGKTATVRQIASHL---GARLYEWD 210 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~el---g~~viei~ 210 (544)
..++|+|+||+||||+++.|++.+ |+.++.+.
T Consensus 53 ~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lD 87 (630)
T 1x6v_B 53 CTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLD 87 (630)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEES
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEec
Confidence 689999999999999999999999 98887764
No 340
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=95.57 E-value=0.0047 Score=58.55 Aligned_cols=26 Identities=23% Similarity=0.455 Sum_probs=16.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHH-HHhC
Q 009072 178 TNVLVITGQAGVGKTATVRQIA-SHLG 203 (544)
Q Consensus 178 ~~~lLL~GPpG~GKTtla~~lA-~elg 203 (544)
+..+.|.||+|+||||+++.|+ ..+.
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC----
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 3689999999999999999999 7653
No 341
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.56 E-value=0.018 Score=57.06 Aligned_cols=31 Identities=32% Similarity=0.622 Sum_probs=25.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh---CCeEE
Q 009072 177 STNVLVITGQAGVGKTATVRQIASHL---GARLY 207 (544)
Q Consensus 177 ~~~~lLL~GPpG~GKTtla~~lA~el---g~~vi 207 (544)
++..+.|.||+|+||||+++.+|..+ +..+.
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~ 132 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVL 132 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 34689999999999999999999875 44544
No 342
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=95.55 E-value=0.072 Score=48.05 Aligned_cols=24 Identities=29% Similarity=0.306 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 009072 179 NVLVITGQAGVGKTATVRQIASHL 202 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~el 202 (544)
-.++|.|++|+||||+++.+....
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTS
T ss_pred cEEEEECCCCCCHHHHHHHHHhhc
Confidence 479999999999999998887654
No 343
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=95.54 E-value=0.15 Score=46.64 Aligned_cols=23 Identities=26% Similarity=0.525 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 009072 179 NVLVITGQAGVGKTATVRQIASH 201 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~e 201 (544)
-.++|.|++|+||||++..+...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999999864
No 344
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=95.53 E-value=0.07 Score=56.01 Aligned_cols=48 Identities=15% Similarity=0.171 Sum_probs=35.2
Q ss_pred cChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeC
Q 009072 153 VQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLGARLYEWDT 211 (544)
Q Consensus 153 ~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg~~viei~~ 211 (544)
..+.+.+.+..|+.. +.+|+.||+|+|||.++-.++..++..++-+..
T Consensus 94 l~~~Q~~ai~~i~~~-----------~~~ll~~~TGsGKT~~~l~~i~~~~~~~Lvl~P 141 (472)
T 2fwr_A 94 LRDYQEKALERWLVD-----------KRGCIVLPTGSGKTHVAMAAINELSTPTLIVVP 141 (472)
T ss_dssp BCHHHHHHHHHHTTT-----------TEEEEECCTTSCHHHHHHHHHHHHCSCEEEEES
T ss_pred cCHHHHHHHHHHHhc-----------CCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEEC
Confidence 445555555554422 359999999999999999888888877766653
No 345
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=95.53 E-value=0.11 Score=48.11 Aligned_cols=23 Identities=13% Similarity=0.453 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 009072 179 NVLVITGQAGVGKTATVRQIASH 201 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~e 201 (544)
..++|.|++|+||||++..+...
T Consensus 30 ~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 30 PEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp CEEEEEESCHHHHHHHHHHHTTC
T ss_pred CEEEEEcCCCCCHHHHHHHHhCC
Confidence 57999999999999999999865
No 346
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=95.51 E-value=0.11 Score=47.35 Aligned_cols=22 Identities=23% Similarity=0.492 Sum_probs=19.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHH
Q 009072 179 NVLVITGQAGVGKTATVRQIAS 200 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~ 200 (544)
-.++|.|++|+||||+++.++.
T Consensus 24 ~ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 24 FKVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHTCC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 4799999999999999999853
No 347
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.49 E-value=0.0093 Score=54.17 Aligned_cols=31 Identities=26% Similarity=0.377 Sum_probs=25.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh---CCeEEEE
Q 009072 179 NVLVITGQAGVGKTATVRQIASHL---GARLYEW 209 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~el---g~~viei 209 (544)
+.+.|.||+|+||||+++.++..+ ++.+..+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i 40 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLI 40 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEE
Confidence 689999999999999999998874 5555433
No 348
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=95.48 E-value=0.17 Score=45.67 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 009072 179 NVLVITGQAGVGKTATVRQIASHL 202 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~el 202 (544)
-.++|.|++|+||||+++.+...-
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 579999999999999999998753
No 349
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.47 E-value=0.0041 Score=61.43 Aligned_cols=25 Identities=16% Similarity=0.422 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhC
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLG 203 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg 203 (544)
..+.|+||+|+||||+++.|++.++
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHh
Confidence 5799999999999999999999876
No 350
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=95.45 E-value=0.49 Score=47.74 Aligned_cols=23 Identities=26% Similarity=0.577 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 009072 179 NVLVITGQAGVGKTATVRQIASH 201 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~e 201 (544)
..+++.|+||+||||++..++..
T Consensus 168 ~~v~lvG~~gvGKSTLin~L~~~ 190 (357)
T 2e87_A 168 PTVVIAGHPNVGKSTLLKALTTA 190 (357)
T ss_dssp CEEEEECSTTSSHHHHHHHHCSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999999865
No 351
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=95.39 E-value=0.31 Score=51.79 Aligned_cols=24 Identities=29% Similarity=0.321 Sum_probs=19.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 009072 179 NVLVITGQAGVGKTATVRQIASHL 202 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~el 202 (544)
+.+++.+|+|+|||.++-..+.+.
T Consensus 23 ~~~l~~~~tGsGKT~~~~~~~~~~ 46 (556)
T 4a2p_A 23 KNALICAPTGSGKTFVSILICEHH 46 (556)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEcCCCChHHHHHHHHHHHH
Confidence 469999999999999876666554
No 352
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.39 E-value=0.057 Score=57.81 Aligned_cols=39 Identities=23% Similarity=0.372 Sum_probs=29.2
Q ss_pred CCCCccEEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeCC
Q 009072 174 DKFSTNVLVITGQAGVGKTATVRQIASHL---GARLYEWDTP 212 (544)
Q Consensus 174 g~~~~~~lLL~GPpG~GKTtla~~lA~el---g~~viei~~s 212 (544)
+-.+...++|.||+|+||||+++.++... |..++.+...
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~e 318 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYE 318 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESS
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 33445789999999999999999998764 4455555443
No 353
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=95.36 E-value=0.17 Score=44.67 Aligned_cols=23 Identities=35% Similarity=0.585 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 009072 179 NVLVITGQAGVGKTATVRQIASH 201 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~e 201 (544)
-.+++.|++|+||||+++.+...
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCSC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999998643
No 354
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=95.35 E-value=0.3 Score=43.06 Aligned_cols=23 Identities=30% Similarity=0.430 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 009072 179 NVLVITGQAGVGKTATVRQIASH 201 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~e 201 (544)
..+++.|++|+||||+++.+...
T Consensus 9 ~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 9 PVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CEEEEESCTTTTHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 57999999999999999999764
No 355
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.35 E-value=0.024 Score=57.57 Aligned_cols=31 Identities=32% Similarity=0.622 Sum_probs=25.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh---CCeEE
Q 009072 177 STNVLVITGQAGVGKTATVRQIASHL---GARLY 207 (544)
Q Consensus 177 ~~~~lLL~GPpG~GKTtla~~lA~el---g~~vi 207 (544)
++..+.|.||+|+||||+++.||..+ +..+.
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~ 189 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVL 189 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhccccCCEEE
Confidence 34689999999999999999999876 44544
No 356
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.33 E-value=0.16 Score=46.62 Aligned_cols=23 Identities=43% Similarity=0.650 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 009072 179 NVLVITGQAGVGKTATVRQIASH 201 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~e 201 (544)
-.++|.|++|+||||+++.+...
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 47999999999999999999865
No 357
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.33 E-value=0.015 Score=54.17 Aligned_cols=45 Identities=27% Similarity=0.375 Sum_probs=33.0
Q ss_pred hccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHhC
Q 009072 151 LAVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHLG 203 (544)
Q Consensus 151 Lv~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~elg 203 (544)
|..+.+..++++..+... .. +.++|.|++|+||||++..++..+.
T Consensus 11 l~~~~~~~~~~~~~~~~~------~~--~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 11 LAENKRLAEKNREALRES------GT--VAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp CHHHHHHHHHHHHHHHHH------TC--EEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred HhhcHHHHHHHHHhhccc------Cc--eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 344556666666655432 22 6899999999999999999998863
No 358
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=95.32 E-value=0.15 Score=45.13 Aligned_cols=23 Identities=26% Similarity=0.354 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 009072 179 NVLVITGQAGVGKTATVRQIASH 201 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~e 201 (544)
-.+++.|++|+||||+++.+...
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 47999999999999999999754
No 359
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=95.30 E-value=0.047 Score=59.28 Aligned_cols=25 Identities=16% Similarity=0.409 Sum_probs=22.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 009072 178 TNVLVITGQAGVGKTATVRQIASHL 202 (544)
Q Consensus 178 ~~~lLL~GPpG~GKTtla~~lA~el 202 (544)
+..+.|.||+|+||||+++.++..+
T Consensus 369 G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 369 GKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3689999999999999999999875
No 360
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=95.29 E-value=0.39 Score=44.76 Aligned_cols=23 Identities=17% Similarity=0.507 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 009072 179 NVLVITGQAGVGKTATVRQIASH 201 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~e 201 (544)
..++|.|++|+||||++..++..
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 57999999999999999998754
No 361
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=95.26 E-value=0.012 Score=58.37 Aligned_cols=25 Identities=32% Similarity=0.593 Sum_probs=22.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 009072 178 TNVLVITGQAGVGKTATVRQIASHL 202 (544)
Q Consensus 178 ~~~lLL~GPpG~GKTtla~~lA~el 202 (544)
+..+.|.||+|+||||+++.+|..+
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHH
Confidence 3689999999999999999999876
No 362
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=95.26 E-value=0.1 Score=47.30 Aligned_cols=23 Identities=22% Similarity=0.380 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 009072 179 NVLVITGQAGVGKTATVRQIASH 201 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~e 201 (544)
..+++.|++|+||||+++.++..
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 57999999999999999999874
No 363
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.25 E-value=0.013 Score=55.95 Aligned_cols=27 Identities=26% Similarity=0.362 Sum_probs=24.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh-CCe
Q 009072 179 NVLVITGQAGVGKTATVRQIASHL-GAR 205 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~el-g~~ 205 (544)
..++|.|++|+||||+++.|++.+ +..
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l~~~~ 30 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTYPEWH 30 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCTTSE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCe
Confidence 679999999999999999999999 443
No 364
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=95.25 E-value=0.024 Score=54.13 Aligned_cols=36 Identities=25% Similarity=0.514 Sum_probs=29.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh---CCe-EEEEeCCC
Q 009072 178 TNVLVITGQAGVGKTATVRQIASHL---GAR-LYEWDTPT 213 (544)
Q Consensus 178 ~~~lLL~GPpG~GKTtla~~lA~el---g~~-viei~~s~ 213 (544)
+..++|.||+|+||||.++.|++.+ |+. ++....|.
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~rep~ 66 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTREPG 66 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEESSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeecCCC
Confidence 3689999999999999999999876 566 55555554
No 365
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.24 E-value=0.4 Score=50.85 Aligned_cols=33 Identities=30% Similarity=0.380 Sum_probs=27.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeC
Q 009072 179 NVLVITGQAGVGKTATVRQIASHL---GARLYEWDT 211 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~el---g~~viei~~ 211 (544)
+.++|.|+||+||||++..||..+ |..+.-+.+
T Consensus 102 ~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 102 NVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 689999999999999999999766 777766654
No 366
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=95.23 E-value=0.12 Score=57.96 Aligned_cols=24 Identities=38% Similarity=0.433 Sum_probs=21.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 009072 178 TNVLVITGQAGVGKTATVRQIASH 201 (544)
Q Consensus 178 ~~~lLL~GPpG~GKTtla~~lA~e 201 (544)
...++|+||.|+||||+++.++.-
T Consensus 607 g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 607 RRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHHH
Confidence 368999999999999999999864
No 367
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.17 E-value=0.3 Score=50.66 Aligned_cols=34 Identities=29% Similarity=0.380 Sum_probs=28.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeC
Q 009072 178 TNVLVITGQAGVGKTATVRQIASHL---GARLYEWDT 211 (544)
Q Consensus 178 ~~~lLL~GPpG~GKTtla~~lA~el---g~~viei~~ 211 (544)
+..+++.||+|+||||++..+|..+ |..+.-+.+
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~ 134 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA 134 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeec
Confidence 4788899999999999999999876 666666554
No 368
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.15 E-value=0.0059 Score=59.17 Aligned_cols=28 Identities=18% Similarity=0.255 Sum_probs=24.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh-CCeE
Q 009072 179 NVLVITGQAGVGKTATVRQIASHL-GARL 206 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~el-g~~v 206 (544)
..++|.|++|+||||+++.|++.+ ++.+
T Consensus 25 ~~I~ieG~~GsGKST~~~~L~~~l~~~~~ 53 (263)
T 1p5z_B 25 KKISIEGNIAAGKSTFVNILKQLCEDWEV 53 (263)
T ss_dssp EEEEEECSTTSSHHHHHTTTGGGCTTEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 689999999999999999999998 5433
No 369
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=95.14 E-value=0.23 Score=49.13 Aligned_cols=25 Identities=20% Similarity=0.436 Sum_probs=21.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 009072 177 STNVLVITGQAGVGKTATVRQIASH 201 (544)
Q Consensus 177 ~~~~lLL~GPpG~GKTtla~~lA~e 201 (544)
++..+.|.|+||+||||++..+...
T Consensus 9 ~~g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 9 KVGYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 3478999999999999999999764
No 370
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=95.14 E-value=0.23 Score=44.79 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 009072 179 NVLVITGQAGVGKTATVRQIASH 201 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~e 201 (544)
..++|.|++|+||||+++.+...
T Consensus 18 ~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 18 LQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp EEEEEECCTTSCHHHHHHHHSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 68999999999999999998653
No 371
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=95.13 E-value=0.02 Score=53.87 Aligned_cols=34 Identities=21% Similarity=0.294 Sum_probs=28.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCC
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLGARLYEWDTP 212 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s 212 (544)
..++|.||+|+||||.++.+++.++..+..+..|
T Consensus 6 ~~i~~eG~~g~GKst~~~~l~~~l~~~~~~~~ep 39 (216)
T 3tmk_A 6 KLILIEGLDRTGKTTQCNILYKKLQPNCKLLKFP 39 (216)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHHCSSEEEEESS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcccceEEEec
Confidence 6899999999999999999999998754444433
No 372
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=95.12 E-value=0.078 Score=50.16 Aligned_cols=21 Identities=33% Similarity=0.365 Sum_probs=16.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHH
Q 009072 179 NVLVITGQAGVGKTATVRQIA 199 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA 199 (544)
+.+++.+|+|+|||.++-..+
T Consensus 68 ~~~li~apTGsGKT~~~~l~~ 88 (237)
T 3bor_A 68 YDVIAQAQSGTGKTATFAISI 88 (237)
T ss_dssp CCEEECCCSSHHHHHHHHHHH
T ss_pred CCEEEECCCCCcHHHHHHHHH
Confidence 569999999999998754433
No 373
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.11 E-value=0.012 Score=60.28 Aligned_cols=33 Identities=18% Similarity=0.472 Sum_probs=26.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh----CCeEEEEeC
Q 009072 179 NVLVITGQAGVGKTATVRQIASHL----GARLYEWDT 211 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~el----g~~viei~~ 211 (544)
..++|.||+|+||||++++++..+ ...++.+..
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~ 173 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIED 173 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEES
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecc
Confidence 689999999999999999999875 345544443
No 374
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.08 E-value=0.26 Score=44.41 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 009072 179 NVLVITGQAGVGKTATVRQIASH 201 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~e 201 (544)
-.+++.|++|+||||++..+...
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCcHHHHHHHHHcC
Confidence 57999999999999999999874
No 375
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=95.06 E-value=0.015 Score=63.73 Aligned_cols=39 Identities=31% Similarity=0.483 Sum_probs=27.9
Q ss_pred cChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 009072 153 VQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL 202 (544)
Q Consensus 153 ~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~el 202 (544)
.++...+.+...+. .+..++.||||||||+++..++..+
T Consensus 181 ln~~Q~~av~~~l~-----------~~~~li~GppGTGKT~~~~~~i~~l 219 (624)
T 2gk6_A 181 LNHSQVYAVKTVLQ-----------RPLSLIQGPPGTGKTVTSATIVYHL 219 (624)
T ss_dssp CCHHHHHHHHHHHT-----------CSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhc-----------CCCeEEECCCCCCHHHHHHHHHHHH
Confidence 35556655555442 1579999999999999988777654
No 376
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=95.04 E-value=0.32 Score=51.60 Aligned_cols=24 Identities=29% Similarity=0.354 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 009072 179 NVLVITGQAGVGKTATVRQIASHL 202 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~el 202 (544)
+.+++.+|+|+|||.++-..+.+.
T Consensus 20 ~~~l~~~~tGsGKT~~~~~~~~~~ 43 (555)
T 3tbk_A 20 KNTIICAPTGCGKTFVSLLICEHH 43 (555)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEeCCCChHHHHHHHHHHHH
Confidence 569999999999999877666554
No 377
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=95.04 E-value=0.095 Score=52.97 Aligned_cols=22 Identities=27% Similarity=0.368 Sum_probs=18.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHH
Q 009072 179 NVLVITGQAGVGKTATVRQIAS 200 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~ 200 (544)
+.+++.+|+|+|||.++-..+-
T Consensus 45 ~~~lv~a~TGsGKT~~~~~~~~ 66 (395)
T 3pey_A 45 RNMIAQSQSGTGKTAAFSLTML 66 (395)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 6799999999999987655443
No 378
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=94.99 E-value=0.014 Score=53.20 Aligned_cols=32 Identities=19% Similarity=0.334 Sum_probs=28.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCC
Q 009072 181 LVITGQAGVGKTATVRQIASHLGARLYEWDTPT 213 (544)
Q Consensus 181 lLL~GPpG~GKTtla~~lA~elg~~viei~~s~ 213 (544)
+|++|++|+|||++|..+|.. +.+++.+....
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~ 33 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQ 33 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCC
Confidence 789999999999999999988 88888777643
No 379
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=94.99 E-value=0.47 Score=43.80 Aligned_cols=23 Identities=35% Similarity=0.507 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 009072 179 NVLVITGQAGVGKTATVRQIASH 201 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~e 201 (544)
-.++|.|++|+||||+++.+...
T Consensus 28 ~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 28 CKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 57999999999999999999875
No 380
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=94.98 E-value=0.031 Score=52.41 Aligned_cols=35 Identities=29% Similarity=0.428 Sum_probs=28.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh---CC-eEEEEeCCC
Q 009072 179 NVLVITGQAGVGKTATVRQIASHL---GA-RLYEWDTPT 213 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~el---g~-~viei~~s~ 213 (544)
..++|.|++|+||||.++.|++.+ |+ .++....|.
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~rep~ 42 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPG 42 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCCcceeeeCCC
Confidence 679999999999999999999887 65 555555443
No 381
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=94.95 E-value=0.014 Score=58.15 Aligned_cols=26 Identities=27% Similarity=0.489 Sum_probs=23.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhC
Q 009072 178 TNVLVITGQAGVGKTATVRQIASHLG 203 (544)
Q Consensus 178 ~~~lLL~GPpG~GKTtla~~lA~elg 203 (544)
+..+.|.||+|+||||+++.|+..+.
T Consensus 90 g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 90 PFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCchHHHHHHHHHhhcc
Confidence 36899999999999999999999763
No 382
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=94.94 E-value=0.021 Score=60.68 Aligned_cols=26 Identities=12% Similarity=0.058 Sum_probs=24.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCC
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLGA 204 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg~ 204 (544)
..++|+|++||||||++++||+.++.
T Consensus 396 ~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 396 FSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp EEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred eEEEecccCCCCHHHHHHHHHHHHHH
Confidence 58999999999999999999999985
No 383
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=94.91 E-value=0.017 Score=52.26 Aligned_cols=26 Identities=31% Similarity=0.395 Sum_probs=23.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCC
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLGA 204 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg~ 204 (544)
...+|+||.|+||||++++|+-.++.
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~l~~ 52 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFVLGG 52 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHcC
Confidence 58899999999999999999988763
No 384
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.91 E-value=0.31 Score=50.67 Aligned_cols=36 Identities=22% Similarity=0.426 Sum_probs=29.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh----CCeEEEEeCCC
Q 009072 178 TNVLVITGQAGVGKTATVRQIASHL----GARLYEWDTPT 213 (544)
Q Consensus 178 ~~~lLL~GPpG~GKTtla~~lA~el----g~~viei~~s~ 213 (544)
++.+++.|++|+||||++-.||..+ |..+.-+.+-.
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~ 139 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADV 139 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCC
Confidence 3789999999999999999998765 77787766543
No 385
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.90 E-value=0.013 Score=55.89 Aligned_cols=25 Identities=24% Similarity=0.367 Sum_probs=22.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhC
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLG 203 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg 203 (544)
..+.|.||+|+||||++++++..+.
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~Gl~~ 56 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGCLDK 56 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCC
Confidence 6899999999999999999997653
No 386
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=94.88 E-value=0.22 Score=46.32 Aligned_cols=23 Identities=26% Similarity=0.550 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 009072 179 NVLVITGQAGVGKTATVRQIASH 201 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~e 201 (544)
-.++|.|++|+||||++..++..
T Consensus 14 ~ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 14 FKIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEEEESCTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 47999999999999999999875
No 387
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=94.88 E-value=0.23 Score=46.47 Aligned_cols=22 Identities=32% Similarity=0.495 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 009072 180 VLVITGQAGVGKTATVRQIASH 201 (544)
Q Consensus 180 ~lLL~GPpG~GKTtla~~lA~e 201 (544)
.++|.|.+|+|||+++..+...
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~ 36 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYD 36 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCcCHHHHHHHHHhC
Confidence 5899999999999999998864
No 388
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=94.86 E-value=0.034 Score=51.80 Aligned_cols=36 Identities=19% Similarity=0.339 Sum_probs=30.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh--CCeEEEEeCCCc
Q 009072 179 NVLVITGQAGVGKTATVRQIASHL--GARLYEWDTPTP 214 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~el--g~~viei~~s~~ 214 (544)
+-+.|-|+.|+||||.++.|++.+ |++++....|..
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~~~~~v~~~~eP~~ 40 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLVKDYDVIMTREPGG 40 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEEESSTT
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHCCCCEEEeeCCCC
Confidence 568899999999999999999988 677777666543
No 389
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=94.85 E-value=0.013 Score=55.58 Aligned_cols=25 Identities=20% Similarity=0.306 Sum_probs=22.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhC
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLG 203 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg 203 (544)
..+.|.||+|+||||++++++.-+.
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl~~ 55 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLLDA 55 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 6799999999999999999997653
No 390
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=94.84 E-value=0.18 Score=46.06 Aligned_cols=23 Identities=26% Similarity=0.501 Sum_probs=19.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 009072 179 NVLVITGQAGVGKTATVRQIASH 201 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~e 201 (544)
-.++|.|++|+||||+++.+...
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 26 FKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEEESTTSSHHHHHHHHHC-
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 47999999999999999998743
No 391
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=94.84 E-value=0.15 Score=54.61 Aligned_cols=24 Identities=25% Similarity=0.487 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 009072 179 NVLVITGQAGVGKTATVRQIASHL 202 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~el 202 (544)
+++|+.|.+|+|||++++.+...+
T Consensus 215 pHlLIaG~TGSGKS~~L~tlI~sL 238 (574)
T 2iut_A 215 PHLLVAGTTGSGKSVGVNAMLLSI 238 (574)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeeEEECCCCCCHHHHHHHHHHHH
Confidence 689999999999999999987765
No 392
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=94.83 E-value=0.29 Score=44.98 Aligned_cols=24 Identities=17% Similarity=0.267 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 009072 179 NVLVITGQAGVGKTATVRQIASHL 202 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~el 202 (544)
..+++.|++|+||||++..+....
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 579999999999999999998753
No 393
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=94.83 E-value=0.022 Score=60.95 Aligned_cols=32 Identities=22% Similarity=0.358 Sum_probs=26.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhC---CeEEEEe
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLG---ARLYEWD 210 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg---~~viei~ 210 (544)
..++|+|+||+||||+++.||+.++ ++...++
T Consensus 36 ~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s 70 (520)
T 2axn_A 36 TVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFN 70 (520)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEec
Confidence 6899999999999999999999984 4444444
No 394
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=94.82 E-value=0.14 Score=49.55 Aligned_cols=23 Identities=22% Similarity=0.455 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 009072 179 NVLVITGQAGVGKTATVRQIASH 201 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~e 201 (544)
..+.|.|+||+||||++..++..
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 57999999999999999999764
No 395
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=94.80 E-value=0.027 Score=51.07 Aligned_cols=24 Identities=21% Similarity=0.411 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 009072 179 NVLVITGQAGVGKTATVRQIASHL 202 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~el 202 (544)
..+++.|++|+||||++..++...
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 589999999999999999998764
No 396
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=94.80 E-value=0.022 Score=51.34 Aligned_cols=27 Identities=30% Similarity=0.492 Sum_probs=23.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCeE
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLGARL 206 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg~~v 206 (544)
+.+||.||+|+||||+|..+.+. |+.+
T Consensus 17 ~gvli~G~SGaGKStlal~L~~r-G~~l 43 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDR-GHQL 43 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHT-TCEE
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc-CCeE
Confidence 68999999999999999999884 6554
No 397
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=94.78 E-value=0.38 Score=42.92 Aligned_cols=23 Identities=22% Similarity=0.393 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 009072 179 NVLVITGQAGVGKTATVRQIASH 201 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~e 201 (544)
..+++.|++|+||||+++.+...
T Consensus 19 ~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 19 LRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 57999999999999999998754
No 398
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.77 E-value=0.015 Score=55.60 Aligned_cols=24 Identities=21% Similarity=0.569 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 009072 179 NVLVITGQAGVGKTATVRQIASHL 202 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~el 202 (544)
..+.|.||+|+||||++++++..+
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 689999999999999999999765
No 399
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=94.75 E-value=0.27 Score=47.39 Aligned_cols=44 Identities=20% Similarity=0.333 Sum_probs=30.2
Q ss_pred hHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHH
Q 009072 155 RKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASH 201 (544)
Q Consensus 155 ~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~e 201 (544)
+...+.+.+++...... +.. ...+++.|++|+||||++..+...
T Consensus 19 ~~~~~~l~~~~~~~~~~--~~~-~~~I~vvG~~g~GKSSLin~l~~~ 62 (270)
T 1h65_A 19 PATQTKLLELLGNLKQE--DVN-SLTILVMGKGGVGKSSTVNSIIGE 62 (270)
T ss_dssp HHHHHHHHHHHHHHHHT--TCC-EEEEEEEESTTSSHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHhhc--CCC-CeEEEEECCCCCCHHHHHHHHhCC
Confidence 34455556665554332 222 257999999999999999999864
No 400
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=94.75 E-value=0.061 Score=50.08 Aligned_cols=21 Identities=29% Similarity=0.251 Sum_probs=16.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHH
Q 009072 179 NVLVITGQAGVGKTATVRQIA 199 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA 199 (544)
+.+++.+|+|+|||.++-..+
T Consensus 42 ~~~lv~a~TGsGKT~~~~~~~ 62 (219)
T 1q0u_A 42 ESMVGQSQTGTGKTHAYLLPI 62 (219)
T ss_dssp CCEEEECCSSHHHHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHHHH
Confidence 569999999999999754433
No 401
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=94.74 E-value=0.084 Score=57.59 Aligned_cols=24 Identities=13% Similarity=0.374 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 009072 179 NVLVITGQAGVGKTATVRQIASHL 202 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~el 202 (544)
+.+.|.||+|+||||++++|+..+
T Consensus 46 p~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 46 PAIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CCEECCCCTTSCHHHHHHHHHSCC
T ss_pred CeEEEECCCCChHHHHHHHHhCCC
Confidence 459999999999999999998753
No 402
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=94.74 E-value=0.017 Score=57.39 Aligned_cols=25 Identities=32% Similarity=0.571 Sum_probs=23.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhC
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLG 203 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg 203 (544)
..+-|.||+|+||||+++.|+..++
T Consensus 81 ~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHh
Confidence 6899999999999999999999876
No 403
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=94.73 E-value=0.22 Score=45.23 Aligned_cols=23 Identities=13% Similarity=0.277 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 009072 179 NVLVITGQAGVGKTATVRQIASH 201 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~e 201 (544)
-.++|.|++|+|||++++.+...
T Consensus 21 ~ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 21 PRILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp CEEEEEESTTSSHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 57999999999999999987764
No 404
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=94.72 E-value=0.16 Score=56.68 Aligned_cols=23 Identities=35% Similarity=0.463 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 009072 179 NVLVITGQAGVGKTATVRQIASH 201 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~e 201 (544)
..++|+||.|+||||+++.++.-
T Consensus 577 ~i~~I~GpNGsGKSTlLr~iagl 599 (765)
T 1ewq_A 577 ELVLITGPNMAGKSTFLRQTALI 599 (765)
T ss_dssp CEEEEESCSSSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHHhh
Confidence 68999999999999999999864
No 405
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=94.68 E-value=0.3 Score=46.90 Aligned_cols=24 Identities=29% Similarity=0.581 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 009072 179 NVLVITGQAGVGKTATVRQIASHL 202 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~el 202 (544)
-.++|.|++|+||||++..+...-
T Consensus 37 ~~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 37 MTVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 579999999999999999998753
No 406
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=94.68 E-value=0.075 Score=48.35 Aligned_cols=22 Identities=18% Similarity=0.339 Sum_probs=19.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHH
Q 009072 179 NVLVITGQAGVGKTATVRQIAS 200 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~ 200 (544)
-.+++.|++|+||||++..+..
T Consensus 30 ~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 30 MRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp EEEEEEESTTSSHHHHHHHHCS
T ss_pred cEEEEECCCCCCHHHHHHHHHh
Confidence 5799999999999999999864
No 407
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=94.66 E-value=0.02 Score=61.16 Aligned_cols=34 Identities=21% Similarity=0.360 Sum_probs=27.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhC--CeEEEEeCC
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLG--ARLYEWDTP 212 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg--~~viei~~s 212 (544)
..++|.||+|+||||++++++..+. ..++.+..+
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~ 296 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDT 296 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCc
Confidence 5699999999999999999998874 345555544
No 408
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=94.62 E-value=0.017 Score=58.57 Aligned_cols=24 Identities=38% Similarity=0.612 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 009072 179 NVLVITGQAGVGKTATVRQIASHL 202 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~el 202 (544)
..+.|.||+||||||++++||.-.
T Consensus 31 e~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCchHHHHHHHHhcCC
Confidence 679999999999999999999865
No 409
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.62 E-value=0.036 Score=51.80 Aligned_cols=41 Identities=17% Similarity=0.359 Sum_probs=29.8
Q ss_pred ChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 009072 154 QRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL 202 (544)
Q Consensus 154 ~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~el 202 (544)
++...+.++..+.. ... ..++|.|++|+||||++..++..+
T Consensus 22 ~~~~a~~~r~~~~~------~~~--~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 22 NKRLADKNRKLLNK------HGV--VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp HHHHHHHHHHHHHH------TTC--EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHh------CCC--eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 44455555555543 222 578888999999999999999875
No 410
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=94.61 E-value=0.015 Score=54.48 Aligned_cols=23 Identities=30% Similarity=0.315 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 009072 179 NVLVITGQAGVGKTATVRQIASH 201 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~e 201 (544)
..+.|.||+|+||||++++++..
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 57899999999999999999975
No 411
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=94.60 E-value=0.047 Score=56.96 Aligned_cols=33 Identities=30% Similarity=0.466 Sum_probs=27.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeC
Q 009072 179 NVLVITGQAGVGKTATVRQIASHL---GARLYEWDT 211 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~el---g~~viei~~ 211 (544)
+.++|.||||+||||++..||..+ |..+.-+.+
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~ 135 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAA 135 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEec
Confidence 689999999999999999999876 567766654
No 412
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=94.59 E-value=0.027 Score=52.68 Aligned_cols=30 Identities=33% Similarity=0.426 Sum_probs=26.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLGARLYEW 209 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg~~viei 209 (544)
-.+-|+|..||||||+++.+++ +|++++..
T Consensus 10 ~~iglTGgigsGKStv~~~l~~-~g~~vida 39 (210)
T 4i1u_A 10 YAIGLTGGIGSGKTTVADLFAA-RGASLVDT 39 (210)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH-TTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCcEEEC
Confidence 3689999999999999999998 99998754
No 413
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=94.58 E-value=0.013 Score=53.09 Aligned_cols=24 Identities=29% Similarity=0.472 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 009072 179 NVLVITGQAGVGKTATVRQIASHL 202 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~el 202 (544)
+.+.|.||+|+||||+++.|+..+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 578999999999999999999886
No 414
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=94.54 E-value=0.017 Score=56.04 Aligned_cols=25 Identities=32% Similarity=0.444 Sum_probs=22.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhC
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLG 203 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg 203 (544)
..+.|.||+|+||||++++++.-+.
T Consensus 33 e~~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 6899999999999999999998753
No 415
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=94.53 E-value=0.22 Score=50.33 Aligned_cols=23 Identities=22% Similarity=0.274 Sum_probs=18.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 009072 179 NVLVITGQAGVGKTATVRQIASH 201 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~e 201 (544)
+.+++.+|+|+|||.++-..+-+
T Consensus 46 ~~~lv~a~TGsGKT~~~~~~~~~ 68 (391)
T 1xti_A 46 MDVLCQAKSGMGKTAVFVLATLQ 68 (391)
T ss_dssp CCEEEECSSCSSHHHHHHHHHHH
T ss_pred CcEEEECCCCCcHHHHHHHHHHH
Confidence 57999999999999887555544
No 416
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=94.52 E-value=0.019 Score=54.95 Aligned_cols=25 Identities=28% Similarity=0.445 Sum_probs=22.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhC
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLG 203 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg 203 (544)
..+.|.||+|+||||++++++..+.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~~ 49 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIVK 49 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5789999999999999999998763
No 417
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=94.51 E-value=0.026 Score=63.64 Aligned_cols=24 Identities=42% Similarity=0.603 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 009072 179 NVLVITGQAGVGKTATVRQIASHL 202 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~el 202 (544)
+..++.||||||||+++..++..+
T Consensus 372 ~~~lI~GppGTGKT~ti~~~i~~l 395 (800)
T 2wjy_A 372 PLSLIQGPPGTGKTVTSATIVYHL 395 (800)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHH
Confidence 578999999999999988777654
No 418
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.51 E-value=0.11 Score=46.82 Aligned_cols=23 Identities=26% Similarity=0.443 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 009072 179 NVLVITGQAGVGKTATVRQIASH 201 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~e 201 (544)
..+++.|++|+||||+++.+...
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 57999999999999999999853
No 419
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=94.51 E-value=0.016 Score=54.43 Aligned_cols=25 Identities=36% Similarity=0.623 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhC
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLG 203 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg 203 (544)
..+.|.||.|+||||++++++..+.
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl~~ 60 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTYLK 60 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5789999999999999999998653
No 420
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=94.51 E-value=0.028 Score=60.87 Aligned_cols=32 Identities=22% Similarity=0.233 Sum_probs=27.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhC----CeEEEEe
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLG----ARLYEWD 210 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg----~~viei~ 210 (544)
..++|+|+||+||||+++.|++.++ ..++.+.
T Consensus 397 ~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD 432 (573)
T 1m8p_A 397 FTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLL 432 (573)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEE
T ss_pred eEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEEC
Confidence 5799999999999999999999986 5555543
No 421
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=94.49 E-value=0.021 Score=54.92 Aligned_cols=23 Identities=26% Similarity=0.459 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 009072 179 NVLVITGQAGVGKTATVRQIASH 201 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~e 201 (544)
..+.|.||+|+||||++++++..
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999999985
No 422
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=94.49 E-value=0.12 Score=47.37 Aligned_cols=21 Identities=14% Similarity=0.203 Sum_probs=16.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHH
Q 009072 179 NVLVITGQAGVGKTATVRQIA 199 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA 199 (544)
+.+++.+|+|+|||.++-..+
T Consensus 41 ~~~lv~apTGsGKT~~~~~~~ 61 (206)
T 1vec_A 41 RDILARAKNGTGKSGAYLIPL 61 (206)
T ss_dssp CCEEEECCSSSTTHHHHHHHH
T ss_pred CCEEEECCCCCchHHHHHHHH
Confidence 579999999999997665433
No 423
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=94.45 E-value=0.022 Score=55.45 Aligned_cols=24 Identities=29% Similarity=0.418 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 009072 179 NVLVITGQAGVGKTATVRQIASHL 202 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~el 202 (544)
..+.|.||.|+||||++++++..+
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl~ 70 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGRE 70 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTCT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 689999999999999999999863
No 424
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=94.43 E-value=0.025 Score=53.45 Aligned_cols=35 Identities=23% Similarity=0.259 Sum_probs=28.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCC----eEEE-EeCCC
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLGA----RLYE-WDTPT 213 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg~----~vie-i~~s~ 213 (544)
..++|.|++|+||||.++.+++.++. +++. ...|.
T Consensus 22 ~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~treP~ 61 (223)
T 3ld9_A 22 MFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPG 61 (223)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEESSC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeeeCCC
Confidence 78999999999999999999997644 6655 44554
No 425
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=94.41 E-value=0.02 Score=54.43 Aligned_cols=25 Identities=32% Similarity=0.573 Sum_probs=22.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhC
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLG 203 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg 203 (544)
..+.|.||.|+||||++++++..+.
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCc
Confidence 6899999999999999999998763
No 426
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=94.41 E-value=0.019 Score=55.48 Aligned_cols=25 Identities=32% Similarity=0.554 Sum_probs=22.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhC
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLG 203 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg 203 (544)
..+.|.||+|+||||++++++..+.
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl~~ 58 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGFLK 58 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 6899999999999999999998653
No 427
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=94.40 E-value=0.31 Score=52.16 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 009072 179 NVLVITGQAGVGKTATVRQIASH 201 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~e 201 (544)
-.++|.|+||+||||++..+...
T Consensus 42 ~kV~lvG~~~vGKSSLl~~l~~~ 64 (535)
T 3dpu_A 42 IKVHLIGDGMAGKTSLLKQLIGE 64 (535)
T ss_dssp EEEEEESSSCSSHHHHHHHHHC-
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999998754
No 428
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=94.40 E-value=0.022 Score=57.76 Aligned_cols=25 Identities=32% Similarity=0.453 Sum_probs=22.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhC
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLG 203 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg 203 (544)
..+.|.||+||||||++++||.-+.
T Consensus 42 e~~~llGpnGsGKSTLLr~iaGl~~ 66 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIAGLER 66 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCC
Confidence 6899999999999999999997653
No 429
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.40 E-value=0.02 Score=54.82 Aligned_cols=24 Identities=33% Similarity=0.613 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 009072 179 NVLVITGQAGVGKTATVRQIASHL 202 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~el 202 (544)
..+.|.||.|+||||++++++..+
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 689999999999999999999865
No 430
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=94.39 E-value=0.17 Score=45.26 Aligned_cols=23 Identities=26% Similarity=0.443 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 009072 179 NVLVITGQAGVGKTATVRQIASH 201 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~e 201 (544)
-.+++.|++|+||||++..+...
T Consensus 22 ~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEEETTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 57999999999999999999864
No 431
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=94.39 E-value=0.02 Score=55.08 Aligned_cols=25 Identities=28% Similarity=0.445 Sum_probs=22.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhC
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLG 203 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg 203 (544)
..+.|.||+|+||||++++++..+.
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl~~ 60 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRFYI 60 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 6899999999999999999998753
No 432
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=94.38 E-value=0.02 Score=56.07 Aligned_cols=25 Identities=32% Similarity=0.478 Sum_probs=22.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhC
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLG 203 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg 203 (544)
..+.|.||+|+||||++++++..+.
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~Gl~~ 59 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNGILK 59 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCC
Confidence 6899999999999999999998653
No 433
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=94.36 E-value=0.022 Score=58.20 Aligned_cols=25 Identities=32% Similarity=0.513 Sum_probs=22.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhC
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLG 203 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg 203 (544)
..+.|.||+||||||++++||.-..
T Consensus 30 e~~~llGpsGsGKSTLLr~iaGl~~ 54 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMIAGLET 54 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CEEEEEcCCCchHHHHHHHHHcCCC
Confidence 6799999999999999999998753
No 434
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=94.36 E-value=0.023 Score=57.87 Aligned_cols=25 Identities=24% Similarity=0.436 Sum_probs=22.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhC
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLG 203 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg 203 (544)
..+.|.||+||||||+++++|.-+.
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~~ 54 (362)
T 2it1_A 30 EFMALLGPSGSGKSTLLYTIAGIYK 54 (362)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCchHHHHHHHHhcCCC
Confidence 6799999999999999999998753
No 435
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=94.35 E-value=0.023 Score=57.75 Aligned_cols=24 Identities=29% Similarity=0.499 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 009072 179 NVLVITGQAGVGKTATVRQIASHL 202 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~el 202 (544)
..+.|.||+||||||+++++|.-.
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 30 EFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEEcCCCchHHHHHHHHHCCC
Confidence 679999999999999999999865
No 436
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=94.35 E-value=0.02 Score=54.88 Aligned_cols=24 Identities=17% Similarity=0.437 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 009072 179 NVLVITGQAGVGKTATVRQIASHL 202 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~el 202 (544)
..+.|.||+|+||||++++++..+
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 689999999999999999999865
No 437
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=94.34 E-value=0.02 Score=55.58 Aligned_cols=25 Identities=28% Similarity=0.464 Sum_probs=22.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhC
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLG 203 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg 203 (544)
..+.|.||+|+||||++++++..+.
T Consensus 51 ei~~liG~NGsGKSTLlk~l~Gl~~ 75 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNLLED 75 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEEcCCCCcHHHHHHHHHcCCC
Confidence 6899999999999999999998763
No 438
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=94.28 E-value=0.022 Score=55.16 Aligned_cols=24 Identities=17% Similarity=0.400 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 009072 179 NVLVITGQAGVGKTATVRQIASHL 202 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~el 202 (544)
..+.|.||+|+||||++++++..+
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhccC
Confidence 689999999999999999999765
No 439
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=94.27 E-value=0.022 Score=55.52 Aligned_cols=25 Identities=20% Similarity=0.373 Sum_probs=22.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhC
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLG 203 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg 203 (544)
..+.|.||+|+||||++++|+..+.
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~Gl~~ 70 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQNLYQ 70 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 6899999999999999999998763
No 440
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=94.26 E-value=0.022 Score=54.87 Aligned_cols=25 Identities=24% Similarity=0.507 Sum_probs=22.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhC
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLG 203 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg 203 (544)
..+.|.||.|+||||++++++..+.
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCC
Confidence 6899999999999999999998764
No 441
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.24 E-value=0.098 Score=52.97 Aligned_cols=31 Identities=35% Similarity=0.590 Sum_probs=26.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh---CCeEEEE
Q 009072 179 NVLVITGQAGVGKTATVRQIASHL---GARLYEW 209 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~el---g~~viei 209 (544)
..+.|+|+||+||||++..++..+ |..+.-+
T Consensus 80 ~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi 113 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEALGMHLIERGHRVAVL 113 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEE
Confidence 689999999999999999999876 6665444
No 442
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=94.24 E-value=0.025 Score=57.80 Aligned_cols=24 Identities=46% Similarity=0.653 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 009072 179 NVLVITGQAGVGKTATVRQIASHL 202 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~el 202 (544)
..+.|.||+||||||+++++|.-+
T Consensus 38 e~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 38 EFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCChHHHHHHHHHcCC
Confidence 689999999999999999999865
No 443
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=94.24 E-value=0.55 Score=52.84 Aligned_cols=24 Identities=29% Similarity=0.321 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 009072 179 NVLVITGQAGVGKTATVRQIASHL 202 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~el 202 (544)
+.+|+.+|+|+|||.++-..+.+.
T Consensus 264 ~~~ll~~~TGsGKTl~~~~~i~~~ 287 (797)
T 4a2q_A 264 KNALICAPTGSGKTFVSILICEHH 287 (797)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEeCCCChHHHHHHHHHHHH
Confidence 569999999999999877766554
No 444
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=94.22 E-value=0.022 Score=55.38 Aligned_cols=24 Identities=29% Similarity=0.580 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 009072 179 NVLVITGQAGVGKTATVRQIASHL 202 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~el 202 (544)
..+.|.||+|+||||++++++..+
T Consensus 38 e~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 689999999999999999999865
No 445
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=94.21 E-value=0.025 Score=57.76 Aligned_cols=24 Identities=38% Similarity=0.632 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 009072 179 NVLVITGQAGVGKTATVRQIASHL 202 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~el 202 (544)
..+.|.||+||||||++++||.-+
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 30 EFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCcHHHHHHHHHHcCC
Confidence 689999999999999999999865
No 446
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=94.21 E-value=0.058 Score=49.85 Aligned_cols=35 Identities=26% Similarity=0.444 Sum_probs=30.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeCCCch
Q 009072 181 LVITGQAGVGKTATVRQIASHL---GARLYEWDTPTPT 215 (544)
Q Consensus 181 lLL~GPpG~GKTtla~~lA~el---g~~viei~~s~~~ 215 (544)
+.|-|+-|+||||.++.|++.+ |.+++....|...
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~treP~~t 40 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKREPGGT 40 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCSS
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCC
Confidence 6789999999999999999886 7888887777644
No 447
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.18 E-value=0.024 Score=54.83 Aligned_cols=25 Identities=32% Similarity=0.589 Sum_probs=22.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhC
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLG 203 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg 203 (544)
..+.|.||.|+||||++++++..+.
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~Gl~~ 66 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIISTLIK 66 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCC
Confidence 6899999999999999999998753
No 448
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=94.18 E-value=0.028 Score=57.21 Aligned_cols=27 Identities=22% Similarity=0.406 Sum_probs=24.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCe
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLGAR 205 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg~~ 205 (544)
..+.|.||+|+||||+++.|+..+...
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 689999999999999999999987654
No 449
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=94.18 E-value=0.52 Score=52.80 Aligned_cols=23 Identities=30% Similarity=0.612 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 009072 179 NVLVITGQAGVGKTATVRQIASH 201 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~e 201 (544)
..+++.||+|+|||+++..++.+
T Consensus 110 ~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 110 QIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999987777654
No 450
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=94.18 E-value=0.023 Score=55.73 Aligned_cols=25 Identities=20% Similarity=0.322 Sum_probs=22.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhC
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLG 203 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg 203 (544)
..+.|.||.|+||||++++++..+.
T Consensus 48 e~~~liG~NGsGKSTLlk~l~Gl~~ 72 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNAYEP 72 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCC
Confidence 6899999999999999999998763
No 451
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=94.18 E-value=0.02 Score=57.88 Aligned_cols=25 Identities=36% Similarity=0.436 Sum_probs=22.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhC
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLG 203 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg 203 (544)
..+.|.||+||||||+++++|.-..
T Consensus 27 e~~~llGpnGsGKSTLLr~iaGl~~ 51 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAGFHV 51 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHTSSC
T ss_pred CEEEEECCCCccHHHHHHHHHcCCC
Confidence 6899999999999999999998653
No 452
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=94.16 E-value=0.019 Score=58.54 Aligned_cols=33 Identities=27% Similarity=0.569 Sum_probs=26.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhC--CeEEEEeC
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLG--ARLYEWDT 211 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg--~~viei~~ 211 (544)
..++|.||+|+||||++++++..+. ...+.++.
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~ 210 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEIPFDQRLITIED 210 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEES
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECC
Confidence 6799999999999999999998764 23455543
No 453
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=94.15 E-value=0.026 Score=61.60 Aligned_cols=24 Identities=42% Similarity=0.671 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 009072 179 NVLVITGQAGVGKTATVRQIASHL 202 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~el 202 (544)
+.++++|||||||||++..+...+
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHH
Confidence 689999999999999988877654
No 454
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=94.09 E-value=0.025 Score=55.05 Aligned_cols=24 Identities=25% Similarity=0.594 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 009072 179 NVLVITGQAGVGKTATVRQIASHL 202 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~el 202 (544)
..+.|.||.|+||||++++++.-+
T Consensus 34 e~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 689999999999999999999765
No 455
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=94.07 E-value=0.028 Score=54.79 Aligned_cols=23 Identities=26% Similarity=0.540 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 009072 180 VLVITGQAGVGKTATVRQIASHL 202 (544)
Q Consensus 180 ~lLL~GPpG~GKTtla~~lA~el 202 (544)
.+.|.||+|+||||++++|+...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999876
No 456
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=94.05 E-value=0.025 Score=54.58 Aligned_cols=25 Identities=24% Similarity=0.457 Sum_probs=22.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhC
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLG 203 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg 203 (544)
..+.|.||+|+||||++++++..+.
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGIHR 56 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 6799999999999999999998753
No 457
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=94.04 E-value=0.29 Score=56.46 Aligned_cols=22 Identities=27% Similarity=0.410 Sum_probs=20.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHH
Q 009072 178 TNVLVITGQAGVGKTATVRQIA 199 (544)
Q Consensus 178 ~~~lLL~GPpG~GKTtla~~lA 199 (544)
+..++|+||.|+||||+++.++
T Consensus 789 g~i~~ItGpNgsGKSTlLr~iG 810 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQAG 810 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHH
Confidence 3789999999999999999984
No 458
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=94.01 E-value=0.3 Score=46.98 Aligned_cols=23 Identities=22% Similarity=0.371 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 009072 179 NVLVITGQAGVGKTATVRQIASH 201 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~e 201 (544)
..++|.|+||+||||++..+...
T Consensus 6 ~kI~lvG~~nvGKTsL~n~l~g~ 28 (258)
T 3a1s_A 6 VKVALAGCPNVGKTSLFNALTGT 28 (258)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHCC
Confidence 46899999999999999999753
No 459
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=93.97 E-value=0.03 Score=51.06 Aligned_cols=24 Identities=25% Similarity=0.470 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 009072 179 NVLVITGQAGVGKTATVRQIASHL 202 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~el 202 (544)
-.++|.||+|+||||+++.++...
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 368999999999999999999864
No 460
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=93.94 E-value=0.66 Score=53.21 Aligned_cols=24 Identities=29% Similarity=0.321 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 009072 179 NVLVITGQAGVGKTATVRQIASHL 202 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~el 202 (544)
+.+++.+|+|+|||.++-..+.+.
T Consensus 264 ~~~ll~a~TGsGKTl~~~~~i~~~ 287 (936)
T 4a2w_A 264 KNALICAPTGSGKTFVSILICEHH 287 (936)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHTT
T ss_pred CCEEEEeCCCchHHHHHHHHHHHH
Confidence 569999999999999887777665
No 461
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=93.93 E-value=0.11 Score=47.61 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHH
Q 009072 179 NVLVITGQAGVGKTATVRQIAS 200 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~ 200 (544)
..+++.|++|+||||+++.++.
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4689999999999999999864
No 462
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=93.93 E-value=0.024 Score=61.08 Aligned_cols=25 Identities=32% Similarity=0.504 Sum_probs=23.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhC
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLG 203 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg 203 (544)
..+.|.||+|+||||++++||..++
T Consensus 370 ~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 370 FTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp EEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCChHHHHHHHHHHhhc
Confidence 6899999999999999999999985
No 463
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=93.91 E-value=0.034 Score=48.49 Aligned_cols=24 Identities=25% Similarity=0.473 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 009072 179 NVLVITGQAGVGKTATVRQIASHL 202 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~el 202 (544)
+.+++.|++|+||||+++.++...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999998753
No 464
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=93.91 E-value=0.032 Score=53.38 Aligned_cols=29 Identities=28% Similarity=0.413 Sum_probs=25.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCeEE
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLGARLY 207 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg~~vi 207 (544)
..+.|+|++|+||||+++.++.++|+.++
T Consensus 2 ~~i~ltG~~~sGK~tv~~~l~~~~g~~~~ 30 (241)
T 1dek_A 2 KLIFLSGVKRSGKDTTADFIMSNYSAVKY 30 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSCEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCeEE
Confidence 36889999999999999999999998763
No 465
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=93.90 E-value=0.035 Score=62.62 Aligned_cols=23 Identities=39% Similarity=0.572 Sum_probs=19.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 009072 179 NVLVITGQAGVGKTATVRQIASH 201 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~e 201 (544)
+..++.||||||||+++..++..
T Consensus 376 ~~~lI~GppGTGKT~~i~~~i~~ 398 (802)
T 2xzl_A 376 PLSLIQGPPGTGKTVTSATIVYH 398 (802)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999998766554
No 466
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=93.89 E-value=0.048 Score=50.54 Aligned_cols=30 Identities=30% Similarity=0.412 Sum_probs=26.0
Q ss_pred CCCccEEEEEcCCCCcHHHHHHHHHHHhCC
Q 009072 175 KFSTNVLVITGQAGVGKTATVRQIASHLGA 204 (544)
Q Consensus 175 ~~~~~~lLL~GPpG~GKTtla~~lA~elg~ 204 (544)
..|..+++|+|.||+||++++..+.+.+|.
T Consensus 8 ~~~~~II~itGk~~SGKd~va~~l~~~~g~ 37 (202)
T 3ch4_B 8 GAPRLVLLFSGKRKSGKDFVTEALQSRLGA 37 (202)
T ss_dssp CCCSEEEEEEECTTSSHHHHHHHHHHHHCT
T ss_pred cCCCEEEEEECCCCCChHHHHHHHHHHcCC
Confidence 345589999999999999999999988863
No 467
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=93.88 E-value=0.055 Score=56.00 Aligned_cols=38 Identities=18% Similarity=0.272 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHH
Q 009072 158 VEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASH 201 (544)
Q Consensus 158 ~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~e 201 (544)
...+++.|..... ....+.|.||+|+||||++++++..
T Consensus 55 ~~~i~~~L~~~~~------~~~~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 55 NSAISDALKEIDS------SVLNVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp HHHHHHHHHHHHH------CCEEEEEEECTTSSHHHHHHHHHTC
T ss_pred chhhhhhhhhccc------CCeEEEEECCCCCcHHHHHHHHhCC
Confidence 3445555555432 1158999999999999999999984
No 468
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=93.87 E-value=0.033 Score=55.21 Aligned_cols=24 Identities=21% Similarity=0.498 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhC
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLG 203 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg 203 (544)
..+.|.||+|+||||++++|+ .+.
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~-~~~ 189 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT-GEE 189 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH-SCC
T ss_pred cEEEEECCCCCCHHHHHHHHH-Hhh
Confidence 689999999999999999999 643
No 469
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=93.86 E-value=0.031 Score=57.48 Aligned_cols=24 Identities=21% Similarity=0.372 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 009072 179 NVLVITGQAGVGKTATVRQIASHL 202 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~el 202 (544)
..+.|.||+||||||++++||..+
T Consensus 48 e~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 48 QRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTCS
T ss_pred CEEEEECCCCChHHHHHHHHhCCC
Confidence 689999999999999999999754
No 470
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=93.81 E-value=0.021 Score=57.88 Aligned_cols=24 Identities=38% Similarity=0.425 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 009072 179 NVLVITGQAGVGKTATVRQIASHL 202 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~el 202 (544)
..+.|.||+||||||+++++|.-.
T Consensus 32 e~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 32 ERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 689999999999999999999865
No 471
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=93.76 E-value=0.096 Score=62.38 Aligned_cols=28 Identities=14% Similarity=0.381 Sum_probs=24.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhCC
Q 009072 177 STNVLVITGQAGVGKTATVRQIASHLGA 204 (544)
Q Consensus 177 ~~~~lLL~GPpG~GKTtla~~lA~elg~ 204 (544)
++..+.|.||+|+||||+++++.+.+..
T Consensus 443 ~G~~vaivG~sGsGKSTll~ll~~~~~~ 470 (1321)
T 4f4c_A 443 AGQTVALVGSSGCGKSTIISLLLRYYDV 470 (1321)
T ss_dssp TTCEEEEEECSSSCHHHHHHHHTTSSCC
T ss_pred CCcEEEEEecCCCcHHHHHHHhcccccc
Confidence 3478999999999999999999998743
No 472
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=93.76 E-value=0.03 Score=55.45 Aligned_cols=25 Identities=28% Similarity=0.529 Sum_probs=22.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhC
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLG 203 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg 203 (544)
..+.|.||+|+||||++++|+....
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTCC
T ss_pred CeEEEECCCCCcHHHHHHHhccccc
Confidence 6899999999999999999987654
No 473
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=93.72 E-value=0.031 Score=54.26 Aligned_cols=24 Identities=38% Similarity=0.612 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 009072 179 NVLVITGQAGVGKTATVRQIASHL 202 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~el 202 (544)
..+.|.||+|+||||++++++..+
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 689999999999999999999876
No 474
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=93.69 E-value=0.037 Score=52.29 Aligned_cols=32 Identities=19% Similarity=0.282 Sum_probs=26.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEe
Q 009072 178 TNVLVITGQAGVGKTATVRQIASHLGARLYEWD 210 (544)
Q Consensus 178 ~~~lLL~GPpG~GKTtla~~lA~elg~~viei~ 210 (544)
+..+.|.||.|+||||+++.|+.. +..+....
T Consensus 20 g~~i~i~G~~GsGKSTl~~~L~~~-~g~v~~~~ 51 (230)
T 2vp4_A 20 PFTVLIEGNIGSGKTTYLNHFEKY-KNDICLLT 51 (230)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGG-TTTEEEEC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc-cCCeEEEe
Confidence 368999999999999999999987 55554433
No 475
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=93.66 E-value=0.022 Score=57.23 Aligned_cols=34 Identities=21% Similarity=0.463 Sum_probs=27.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCC--eEEEEeCC
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLGA--RLYEWDTP 212 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg~--~viei~~s 212 (544)
..++|.||+|+||||++++++..+.. ..+.++..
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~ 207 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDT 207 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCe
Confidence 57999999999999999999988642 34556544
No 476
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=93.63 E-value=0.088 Score=52.25 Aligned_cols=51 Identities=24% Similarity=0.462 Sum_probs=35.1
Q ss_pred hHHHHHHHHHHHHhhcCCC---C---CCCccEEEEEcCCCCcHHHHHHHHHHHhCCeE
Q 009072 155 RKKVEEVRAWFEERLGDSK---D---KFSTNVLVITGQAGVGKTATVRQIASHLGARL 206 (544)
Q Consensus 155 ~~~~~~l~~wL~~~~~~~~---g---~~~~~~lLL~GPpG~GKTtla~~lA~elg~~v 206 (544)
.+.+..+..||...+.... | ....+.++|.|++|+||||+|..+.+. |..+
T Consensus 115 s~~~~~l~~~l~~~~~~~~~~H~~~v~~~g~~vl~~G~sG~GKSt~a~~l~~~-g~~l 171 (314)
T 1ko7_A 115 TQLMSRLTTFLEHELARTTSLHGVLVDVYGVGVLITGDSGIGKSETALELIKR-GHRL 171 (314)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEESEEEEETTEEEEEEESTTSSHHHHHHHHHHT-TCEE
T ss_pred hHHHHHHHHHHHHhhccceeeeEEEEEECCEEEEEEeCCCCCHHHHHHHHHhc-CCce
Confidence 3456688888887543100 0 011268999999999999999999875 5554
No 477
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=93.62 E-value=0.031 Score=58.98 Aligned_cols=25 Identities=24% Similarity=0.440 Sum_probs=23.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhC
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLG 203 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg 203 (544)
..++|.|.||+||||+++.||+.++
T Consensus 40 ~~IvlvGlpGsGKSTia~~La~~l~ 64 (469)
T 1bif_A 40 TLIVMVGLPARGKTYISKKLTRYLN 64 (469)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHh
Confidence 5899999999999999999999875
No 478
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=93.62 E-value=1.1 Score=49.32 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=19.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 009072 179 NVLVITGQAGVGKTATVRQIASH 201 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~e 201 (544)
+.+|+.+|+|+|||..+-..+.+
T Consensus 29 ~~~iv~~~TGsGKTl~~~~~i~~ 51 (696)
T 2ykg_A 29 KNTIICAPTGCGKTFVSLLICEH 51 (696)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEcCCCchHHHHHHHHHHH
Confidence 57999999999999988776654
No 479
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=93.61 E-value=0.4 Score=47.29 Aligned_cols=23 Identities=30% Similarity=0.505 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 009072 179 NVLVITGQAGVGKTATVRQIASH 201 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~e 201 (544)
..++|.|+||+|||+++..+...
T Consensus 4 ~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 4 SKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEEEECCTTSSHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 57999999999999999998754
No 480
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=93.59 E-value=0.076 Score=50.82 Aligned_cols=32 Identities=25% Similarity=0.361 Sum_probs=27.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh--CCeEEEEe
Q 009072 179 NVLVITGQAGVGKTATVRQIASHL--GARLYEWD 210 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~el--g~~viei~ 210 (544)
..+++.|.+|+||||++..+|..+ |..+.-++
T Consensus 15 ~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd 48 (262)
T 1yrb_A 15 MIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVN 48 (262)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEE
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEe
Confidence 789999999999999999999876 66666555
No 481
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=93.56 E-value=0.034 Score=54.77 Aligned_cols=24 Identities=33% Similarity=0.607 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 009072 179 NVLVITGQAGVGKTATVRQIASHL 202 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~el 202 (544)
..+.|.||.|+||||++++++..+
T Consensus 65 e~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp CEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 689999999999999999999875
No 482
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=93.52 E-value=0.29 Score=45.54 Aligned_cols=22 Identities=32% Similarity=0.531 Sum_probs=19.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHH
Q 009072 179 NVLVITGQAGVGKTATVRQIAS 200 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~ 200 (544)
-.++|.|+||+|||+++..++.
T Consensus 38 ~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 38 YRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp EEEEEECCTTSSHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 4699999999999999999874
No 483
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=93.42 E-value=0.43 Score=49.53 Aligned_cols=32 Identities=25% Similarity=0.269 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCcHHHHH-HHHHH---HhCCeEEEEe
Q 009072 179 NVLVITGQAGVGKTATV-RQIAS---HLGARLYEWD 210 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla-~~lA~---elg~~viei~ 210 (544)
+.+|+.||+|+|||..+ ..+.+ .-|..++.+.
T Consensus 3 ~~~lv~a~TGsGKT~~~l~~~l~~~~~~g~~~lvl~ 38 (431)
T 2v6i_A 3 ELTVLDLHPGAGKTRRVLPQLVREAVKKRLRTVILA 38 (431)
T ss_dssp CEEEEECCTTSCTTTTHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEC
Confidence 68999999999999986 43432 2355554443
No 484
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=93.41 E-value=0.037 Score=50.00 Aligned_cols=21 Identities=38% Similarity=0.654 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 009072 180 VLVITGQAGVGKTATVRQIAS 200 (544)
Q Consensus 180 ~lLL~GPpG~GKTtla~~lA~ 200 (544)
.++|.|++|+||||+++.++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999986
No 485
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=93.39 E-value=0.045 Score=48.39 Aligned_cols=23 Identities=17% Similarity=0.420 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 009072 179 NVLVITGQAGVGKTATVRQIASH 201 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~e 201 (544)
..++|.|++|+||||+++.++..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999864
No 486
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=93.36 E-value=0.047 Score=47.99 Aligned_cols=24 Identities=33% Similarity=0.516 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 009072 179 NVLVITGQAGVGKTATVRQIASHL 202 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~el 202 (544)
...+|+||.|+|||+++.++.-.+
T Consensus 24 g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 688999999999999999998766
No 487
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=93.36 E-value=0.031 Score=56.74 Aligned_cols=25 Identities=24% Similarity=0.512 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhC
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLG 203 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg 203 (544)
..+.|.||+|+||||++++|+....
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CEEEEECCCCccHHHHHHHHhcccc
Confidence 6899999999999999999986544
No 488
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=93.27 E-value=0.072 Score=53.85 Aligned_cols=28 Identities=25% Similarity=0.348 Sum_probs=25.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCeE
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLGARL 206 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg~~v 206 (544)
..+.|.||+|+||||+++.++.......
T Consensus 72 q~~gIiG~nGaGKTTLl~~I~g~~~~~~ 99 (347)
T 2obl_A 72 QRIGIFAGSGVGKSTLLGMICNGASADI 99 (347)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSCCSE
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCE
Confidence 6899999999999999999999986554
No 489
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=93.26 E-value=0.0074 Score=48.21 Aligned_cols=52 Identities=2% Similarity=0.026 Sum_probs=42.8
Q ss_pred cccccccccccccCCccCccccccccccccccccccCCCCCChhhhhhhhhhhhhccCcccc
Q 009072 57 KKNVEHFLTPSRFEGLVNPKRDLALGSSSRQQLWTNKNKPCSLEEHAIQKENVGRFLTPSRF 118 (544)
Q Consensus 57 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ed~~~~l~~~~i 118 (544)
..+||+..++..|.||+|++++.+|.+|...++..... .++.+||..++. ++
T Consensus 20 ~~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~~~~--------~i~~~df~~Al~--~v 71 (88)
T 3vlf_B 20 ERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRK--------VATEKDFLKAVD--KV 71 (88)
T ss_dssp CSCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHSCS--------SBCHHHHHHHHH--HH
T ss_pred CCccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhccc--------cCCHHHHHHHHH--HH
Confidence 36799999999999999999999999999888544322 377889998887 55
No 490
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=93.23 E-value=0.16 Score=48.03 Aligned_cols=20 Identities=30% Similarity=0.174 Sum_probs=16.5
Q ss_pred cEEEEEcCCCCcHHHHHHHH
Q 009072 179 NVLVITGQAGVGKTATVRQI 198 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~l 198 (544)
+.+++.+|+|+|||.+.-..
T Consensus 67 ~~~l~~apTGsGKT~~~~l~ 86 (242)
T 3fe2_A 67 LDMVGVAQTGSGKTLSYLLP 86 (242)
T ss_dssp CCEEEEECTTSCHHHHHHHH
T ss_pred CCEEEECCCcCHHHHHHHHH
Confidence 57999999999999885433
No 491
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=93.08 E-value=0.54 Score=48.43 Aligned_cols=31 Identities=26% Similarity=0.273 Sum_probs=24.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh----CCeEEEEe
Q 009072 180 VLVITGQAGVGKTATVRQIASHL----GARLYEWD 210 (544)
Q Consensus 180 ~lLL~GPpG~GKTtla~~lA~el----g~~viei~ 210 (544)
.+++.+|+|+|||..+-.++.+. +..++-+.
T Consensus 25 ~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~ 59 (494)
T 1wp9_A 25 NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLA 59 (494)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEEC
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 68999999999999998887765 55555443
No 492
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=93.06 E-value=0.056 Score=54.41 Aligned_cols=24 Identities=42% Similarity=0.559 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 009072 179 NVLVITGQAGVGKTATVRQIASHL 202 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~el 202 (544)
..+.|.||||+||||+++.++..+
T Consensus 56 ~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 56 IRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhh
Confidence 689999999999999999999765
No 493
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=93.06 E-value=0.071 Score=57.34 Aligned_cols=25 Identities=24% Similarity=0.310 Sum_probs=23.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhC
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLG 203 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg 203 (544)
..++|+|++|+||||+++.|++.++
T Consensus 373 ~~I~l~G~~GsGKSTia~~La~~L~ 397 (546)
T 2gks_A 373 FCVWLTGLPCAGKSTIAEILATMLQ 397 (546)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEccCCCCCCHHHHHHHHHHHhh
Confidence 6799999999999999999999875
No 494
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=93.05 E-value=0.17 Score=55.31 Aligned_cols=98 Identities=18% Similarity=0.267 Sum_probs=56.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeCCCchhhhhhhhccccCcccccchHHHHHHHHHHHhhcCCCCCCCCCC
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLGARLYEWDTPTPTIWQEYMHNCKTGLEYTSKLDEFENFVERIRRYGSTSPSIPGES 258 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg~~viei~~s~~~~~~e~l~~~~~g~~~~s~~~~~~~~l~~~~~~~~l~~~~~~~~ 258 (544)
...+|+|++|.|||+++-.++..+...+ -+.+|..........-....+.+... +. ++ .. .
T Consensus 193 ~~~vlta~RGRGKSa~lG~~~a~~~~~~-~vtAP~~~a~~~l~~~~~~~i~~~~P-d~---~~----~~----------~ 253 (671)
T 2zpa_A 193 GVAAVTAARGRGKSALAGQLISRIAGRA-IVTAPAKASTDVLAQFAGEKFRFIAP-DA---LL----AS----------D 253 (671)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHSSSCE-EEECSSCCSCHHHHHHHGGGCCBCCH-HH---HH----HS----------C
T ss_pred CeEEEecCCCCCHHHHHHHHHHHHHhCc-EEECCCHHHHHHHHHHhhCCeEEeCc-hh---hh----hC----------c
Confidence 5789999999999999999999886553 66777654221110000111222111 11 11 01 0
Q ss_pred CCceEEEEecCCCCCchhHHHHHHHHHHHHHhcCCCcEEEEEccCCC
Q 009072 259 KSSAILLIDDLPVTNGRTAFERLRQCLLLLVRSTHIPTAVVLTECGK 305 (544)
Q Consensus 259 ~~~~vIlIDEid~l~~~~~~~~~~~~L~~~~~~~~~piIiI~t~~~~ 305 (544)
...-++||||+-.+... .|..++. ..|.|+++|+.+.
T Consensus 254 ~~~dlliVDEAAaIp~p--------ll~~ll~--~~~~v~~~tTv~G 290 (671)
T 2zpa_A 254 EQADWLVVDEAAAIPAP--------LLHQLVS--RFPRTLLTTTVQG 290 (671)
T ss_dssp CCCSEEEEETGGGSCHH--------HHHHHHT--TSSEEEEEEEBSS
T ss_pred ccCCEEEEEchhcCCHH--------HHHHHHh--hCCeEEEEecCCc
Confidence 22459999999877532 2444444 3466777777543
No 495
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=93.00 E-value=0.038 Score=54.82 Aligned_cols=26 Identities=23% Similarity=0.478 Sum_probs=23.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhC
Q 009072 178 TNVLVITGQAGVGKTATVRQIASHLG 203 (544)
Q Consensus 178 ~~~lLL~GPpG~GKTtla~~lA~elg 203 (544)
...+.|.||+|+||||++++++..+.
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~gl~~ 105 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFRFYD 105 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCchHHHHHHHHHcCCC
Confidence 36899999999999999999998763
No 496
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=92.97 E-value=0.14 Score=51.69 Aligned_cols=25 Identities=20% Similarity=0.368 Sum_probs=22.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 009072 178 TNVLVITGQAGVGKTATVRQIASHL 202 (544)
Q Consensus 178 ~~~lLL~GPpG~GKTtla~~lA~el 202 (544)
...+.|.|+||+||||++..++..+
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999999864
No 497
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=92.94 E-value=0.0076 Score=47.95 Aligned_cols=50 Identities=6% Similarity=0.038 Sum_probs=41.1
Q ss_pred cccccccccccccCCccCccccccccccccccccccCCCCCChhhhhhhhhhhhhccC
Q 009072 57 KKNVEHFLTPSRFEGLVNPKRDLALGSSSRQQLWTNKNKPCSLEEHAIQKENVGRFLT 114 (544)
Q Consensus 57 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ed~~~~l~ 114 (544)
..+||+..++..|.||+|++++.+|++|...++.... ..++++||..++.
T Consensus 30 ~~dvdl~~LA~~T~G~SGADL~~l~~eAa~~alr~~~--------~~I~~~df~~Al~ 79 (86)
T 2krk_A 30 TRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERR--------VHVTQEDFEMAVA 79 (86)
T ss_dssp CTTCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHTTC--------SEECHHHHHHHHH
T ss_pred CcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHcC--------CCCCHHHHHHHHH
Confidence 3679999999999999999999999999988843321 3477888888776
No 498
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=92.93 E-value=0.083 Score=55.16 Aligned_cols=28 Identities=21% Similarity=0.280 Sum_probs=25.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCeE
Q 009072 179 NVLVITGQAGVGKTATVRQIASHLGARL 206 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~elg~~v 206 (544)
..+.|.||+||||||+++.++.......
T Consensus 158 q~~~IvG~sGsGKSTLl~~Iag~~~~~~ 185 (438)
T 2dpy_A 158 QRMGLFAGSGVGKSVLLGMMARYTRADV 185 (438)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSCCSE
T ss_pred CEEEEECCCCCCHHHHHHHHhcccCCCe
Confidence 6899999999999999999999986543
No 499
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=92.91 E-value=0.36 Score=50.55 Aligned_cols=23 Identities=35% Similarity=0.595 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 009072 179 NVLVITGQAGVGKTATVRQIASH 201 (544)
Q Consensus 179 ~~lLL~GPpG~GKTtla~~lA~e 201 (544)
+.++|.|.||+||||+...++..
T Consensus 24 ~~V~lvG~~nvGKSTL~n~l~~~ 46 (456)
T 4dcu_A 24 PVVAIVGRPNVGKSTIFNRIAGE 46 (456)
T ss_dssp CEEEEECSSSSSHHHHHHHHEEE
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 57999999999999999998653
No 500
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=92.86 E-value=0.32 Score=52.55 Aligned_cols=45 Identities=22% Similarity=0.176 Sum_probs=29.5
Q ss_pred ccChHHHHHHHHHHHHhhcCCCCCCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 009072 152 AVQRKKVEEVRAWFEERLGDSKDKFSTNVLVITGQAGVGKTATVRQIASHL 202 (544)
Q Consensus 152 v~~~~~~~~l~~wL~~~~~~~~g~~~~~~lLL~GPpG~GKTtla~~lA~el 202 (544)
...+.+.+.+..++..... | .+.+|+++|+|+|||.++-.++..+
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~---~---~~~~ll~~~TGsGKT~~~~~~~~~l 222 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQ---G---KKRSLITMATGTGKTVVAFQISWKL 222 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHT---T---CSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHhc---C---CCceEEEecCCCChHHHHHHHHHHH
Confidence 3455555555555544322 2 1568999999999999987777664
Done!