BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009073
(544 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ZYK|A Chain A, Structure Of Calm (Picalm) Anth Domain
pdb|3ZYK|B Chain B, Structure Of Calm (Picalm) Anth Domain
Length = 296
Score = 102 bits (253), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 67/267 (25%), Positives = 131/267 (49%), Gaps = 14/267 (5%)
Query: 38 AIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIV 97
+ KAT H K+KH+ + ++ +L +R + + +W V K+LI
Sbjct: 32 TVCKATTHEIMGPKKKHLDYLIQC--TNEMNVNIPQLADSLFERTTNS-SWVVVFKSLIT 88
Query: 98 IHRALREVDPTFHEEVINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFLEERLEC 157
H + +E I Y SR+ + N+++F D S +D S ++R Y+ +L E+
Sbjct: 89 THHLM----VYGNERFIQYLASRNTLFNLSNFLDKSGLQGYDMSTFIRRYSRYLNEKAVS 144
Query: 158 FRVLKYDIETDRPRTKD-----LDTAEXXXXXXXXXXXXFRVLGCQPQGAAVHNFVIQLA 212
+R + +D T R D ++T + +L + N VI A
Sbjct: 145 YRQVAFDF-TKVKRGADGVMRTMNTEKLLKTVPIIQNQMDALLDFNVNSNELTNGVINAA 203
Query: 213 LSLVASESTKIYQAISDGTVNLVDKFFEMQRHDALKALDIYRRAGQQAERLSEFYEVCKS 272
L+ ++ +++ A ++G +NL++K+F+M+++ + LDIY++ + R+SEF +V +
Sbjct: 204 FMLLFKDAIRLFAAYNEGIINLLEKYFDMKKNQCKEGLDIYKKFLTRMTRISEFLKVAEQ 263
Query: 273 LDIGRGERFIKIEQPPASFLQAMEEYV 299
+ I RG+ + Q P+S L A+E+++
Sbjct: 264 VGIDRGD-IPDLSQAPSSLLDALEQHL 289
>pdb|1HF8|A Chain A, Calm-N N-Terminal Domain Of Clathrin Assembly Lymphoid
Myeloid Leukaemia Protein
pdb|1HFA|A Chain A, Calm-N N-Terminal Domain Of Clathrin Assembly Lymphoid
Myeloid Leukaemia Protein, Pi(4,5)p2 Complex
pdb|1HG5|A Chain A, Calm-N N-Terminal Domain Of Clathrin Assembly Lymphoid
Myeloid Leukaemia Protein, Inositol(1,2,3,4,5,6)p6
Complex
pdb|1HG2|A Chain A, Calm-N N-Terminal Domain Of Clathrin Assembly Lymphoid
Myeloid Leukaemia Protein, Inositol(4,5)p2 Complex
Length = 289
Score = 101 bits (252), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 67/267 (25%), Positives = 131/267 (49%), Gaps = 14/267 (5%)
Query: 38 AIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIV 97
+ KAT H K+KH+ + ++ +L +R + + +W V K+LI
Sbjct: 25 TVCKATTHEIMGPKKKHLDYLIQC--TNEMNVNIPQLADSLFERTTNS-SWVVVFKSLIT 81
Query: 98 IHRALREVDPTFHEEVINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFLEERLEC 157
H + +E I Y SR+ + N+++F D S +D S ++R Y+ +L E+
Sbjct: 82 THHLM----VYGNERFIQYLASRNTLFNLSNFLDKSGLQGYDMSTFIRRYSRYLNEKAVS 137
Query: 158 FRVLKYDIETDRPRTKD-----LDTAEXXXXXXXXXXXXFRVLGCQPQGAAVHNFVIQLA 212
+R + +D T R D ++T + +L + N VI A
Sbjct: 138 YRQVAFDF-TKVKRGADGVMRTMNTEKLLKTVPIIQNQMDALLDFNVNSNELTNGVINAA 196
Query: 213 LSLVASESTKIYQAISDGTVNLVDKFFEMQRHDALKALDIYRRAGQQAERLSEFYEVCKS 272
L+ ++ +++ A ++G +NL++K+F+M+++ + LDIY++ + R+SEF +V +
Sbjct: 197 FMLLFKDAIRLFAAYNEGIINLLEKYFDMKKNQCKEGLDIYKKFLTRMTRISEFLKVAEQ 256
Query: 273 LDIGRGERFIKIEQPPASFLQAMEEYV 299
+ I RG+ + Q P+S L A+E+++
Sbjct: 257 VGIDRGD-IPDLSQAPSSLLDALEQHL 282
>pdb|3ZYM|A Chain A, Structure Of Calm (Picalm) In Complex With Vamp8
pdb|3ZYM|B Chain B, Structure Of Calm (Picalm) In Complex With Vamp8
pdb|3ZYM|C Chain C, Structure Of Calm (Picalm) In Complex With Vamp8
Length = 310
Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 61/247 (24%), Positives = 119/247 (48%), Gaps = 13/247 (5%)
Query: 38 AIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIV 97
+ KAT H K+KH+ + ++ +L +R + + +W V K+LI
Sbjct: 32 TVCKATTHEIMGPKKKHLDYLIQC--TNEMNVNIPQLADSLFERTTNS-SWVVVFKSLIT 88
Query: 98 IHRALREVDPTFHEEVINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFLEERLEC 157
H + +E I Y SR+ + N+++F D S +D S ++R Y+ +L E+
Sbjct: 89 THHLM----VYGNERFIQYLASRNTLFNLSNFLDKSGLQGYDMSTFIRRYSRYLNEKAVS 144
Query: 158 FRVLKYDIETDRPRTKD-----LDTAEXXXXXXXXXXXXFRVLGCQPQGAAVHNFVIQLA 212
+R + +D T R D ++T + +L + N VI A
Sbjct: 145 YRQVAFDF-TKVKRGADGVMRTMNTEKLLKTVPIIQNQMDALLDFNVNSNELTNGVINAA 203
Query: 213 LSLVASESTKIYQAISDGTVNLVDKFFEMQRHDALKALDIYRRAGQQAERLSEFYEVCKS 272
L+ ++ +++ A ++G +NL++K+F+M+++ + LDIY++ + R+SEF +V +
Sbjct: 204 FMLLFKDAIRLFAAYNEGIINLLEKYFDMKKNQCKEGLDIYKKFLTRMTRISEFLKVAEQ 263
Query: 273 LDIGRGE 279
+ I RG+
Sbjct: 264 VGIDRGD 270
>pdb|3ZYL|A Chain A, Structure Of A Truncated Calm (Picalm) Anth Domain
pdb|3ZYL|B Chain B, Structure Of A Truncated Calm (Picalm) Anth Domain
Length = 271
Score = 92.8 bits (229), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 61/247 (24%), Positives = 119/247 (48%), Gaps = 13/247 (5%)
Query: 38 AIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIV 97
+ KAT H K+KH+ + ++ +L +R + + +W V K+LI
Sbjct: 32 TVCKATTHEIMGPKKKHLDYLIQC--TNEMNVNIPQLADSLFERTTNS-SWVVVFKSLIT 88
Query: 98 IHRALREVDPTFHEEVINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFLEERLEC 157
H + +E I Y SR+ + N+++F D S +D S ++R Y+ +L E+
Sbjct: 89 THHLM----VYGNERFIQYLASRNTLFNLSNFLDKSGLQGYDMSTFIRRYSRYLNEKAVS 144
Query: 158 FRVLKYDIETDRPRTKD-----LDTAEXXXXXXXXXXXXFRVLGCQPQGAAVHNFVIQLA 212
+R + +D T R D ++T + +L + N VI A
Sbjct: 145 YRQVAFDF-TKVKRGADGVMRTMNTEKLLKTVPIIQNQMDALLDFNVNSNELTNGVINAA 203
Query: 213 LSLVASESTKIYQAISDGTVNLVDKFFEMQRHDALKALDIYRRAGQQAERLSEFYEVCKS 272
L+ ++ +++ A ++G +NL++K+F+M+++ + LDIY++ + R+SEF +V +
Sbjct: 204 FMLLFKDAIRLFAAYNEGIINLLEKYFDMKKNQCKEGLDIYKKFLTRMTRISEFLKVAEQ 263
Query: 273 LDIGRGE 279
+ I RG+
Sbjct: 264 VGIDRGD 270
>pdb|1HX8|A Chain A, Crystal Structure Of N-Terminal Domain Of Drosophila Ap180
pdb|1HX8|B Chain B, Crystal Structure Of N-Terminal Domain Of Drosophila Ap180
Length = 299
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/280 (22%), Positives = 127/280 (45%), Gaps = 28/280 (10%)
Query: 38 AIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIV 97
++ KAT K+KH+ + A P + + + L +R S+ NW V K+LI
Sbjct: 27 SVCKATTEECIGPKKKHLDYLVHC--ANEPNVSIPHLANLLIER-SQNANWVVVYKSLIT 83
Query: 98 IHRALREVDPTFHEEVINYGRSRSHMLNMAHFKDDSSPN-----------AWDYSAWVRS 146
H + +E + Y S + N++ F D + +D S ++R
Sbjct: 84 THHLM----AYGNERFMQYLASSNSTFNLSSFLDKGTVQDGGMGVPGGRMGYDMSPFIRR 139
Query: 147 YALFLEERLECFRVLKYDI-------ETDRPRTKDLDTAEXXXXXXXXXXXXFRVLGCQP 199
YA +L E+ +R + +D E R+ + + CQ
Sbjct: 140 YAKYLNEKSLSYRAMAFDFCKVKRGKEEGSLRSMNAEKLLKTLPVLQAQLDALLEFDCQS 199
Query: 200 QGAAVHNFVIQLALSLVASESTKIYQAISDGTVNLVDKFFEMQRHDALKALDIYRRAGQQ 259
+ N VI ++ L+ + +++ +DG +NL++K+F+M + A ALD+Y++ +
Sbjct: 200 ND--LSNGVINMSFMLLFRDLIRLFACYNDGIINLLEKYFDMNKKHARDALDLYKKFLVR 257
Query: 260 AERLSEFYEVCKSLDIGRGERFIKIEQPPASFLQAMEEYV 299
+R+ EF +V +++ I +G+ + + P+S L A+E+++
Sbjct: 258 MDRVGEFLKVAENVGIDKGD-IPDLTKAPSSLLDALEQHL 296
>pdb|3NUH|B Chain B, A Domain Insertion In E. Coli Gyrb Adopts A Novel Fold
That Plays A Critical Role In Gyrase Function
Length = 420
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 6/58 (10%)
Query: 253 YRRAGQQAERLSEFYEVCKSLDIGRGERFIKIEQPPASFLQAMEEYVKEAPRGSTFRK 310
YRR E+L E + I RGER QP ASF QA++ VKE+ RG + ++
Sbjct: 303 YRRICTLGEKLRGLLE--EDAFIERGER----RQPVASFEQALDWLVKESRRGLSIQR 354
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.130 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,681,539
Number of Sequences: 62578
Number of extensions: 487885
Number of successful extensions: 1104
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1094
Number of HSP's gapped (non-prelim): 7
length of query: 544
length of database: 14,973,337
effective HSP length: 104
effective length of query: 440
effective length of database: 8,465,225
effective search space: 3724699000
effective search space used: 3724699000
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)