Query 009073
Match_columns 544
No_of_seqs 210 out of 564
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 18:13:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009073.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009073hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1hx8_A Synapse-enriched clathr 100.0 6.8E-73 2.3E-77 579.6 30.8 276 8-301 6-298 (299)
2 3zym_A Phosphatidylinositol-bi 100.0 1.2E-67 4E-72 543.2 26.0 277 8-301 11-291 (310)
3 3zyl_A Phosphatidylinositol-bi 100.0 2E-65 6.8E-70 517.6 25.0 255 8-278 11-269 (271)
4 1eyh_A Epsin; superhelix of he 99.6 1.8E-14 6.3E-19 132.8 11.5 118 31-155 2-120 (144)
5 1inz_A EPS15-interacting porte 99.5 5.8E-15 2E-19 136.7 8.0 119 31-156 20-139 (148)
6 1xgw_A Epsin 4; ENTH, enthopro 99.3 1.7E-11 6E-16 116.3 13.0 117 31-154 31-149 (176)
7 3onk_A Epsin-3, ENT3; helix, p 99.3 1.1E-11 3.7E-16 115.0 11.2 120 28-154 5-126 (150)
8 1vdy_A Hypothetical protein (R 98.5 5.2E-07 1.8E-11 82.7 11.6 115 35-155 12-128 (140)
9 1juq_A ADP-ribosylation factor 96.0 0.018 6.1E-07 54.1 8.5 78 33-113 12-89 (171)
10 1elk_A Target of MYB1; superhe 95.9 0.033 1.1E-06 51.4 9.5 79 33-113 15-93 (157)
11 3ldz_A STAM-1, signal transduc 95.7 0.044 1.5E-06 49.7 9.2 78 33-113 4-81 (140)
12 3rru_A TOM1L1 protein; structu 95.7 0.047 1.6E-06 50.3 9.4 79 33-113 15-93 (152)
13 1x5b_A Signal transducing adap 95.5 0.044 1.5E-06 50.9 8.8 78 33-113 14-91 (163)
14 3g2s_A C-terminal fragment of 95.5 0.07 2.4E-06 49.0 10.0 79 32-113 9-87 (149)
15 1mhq_A ADP-ribosylation factor 95.4 0.05 1.7E-06 49.8 8.7 76 35-113 2-77 (148)
16 3zyq_A Hepatocyte growth facto 95.2 0.078 2.7E-06 51.7 9.6 79 32-113 6-84 (226)
17 1dvp_A HRS, hepatocyte growth 94.7 0.11 3.7E-06 50.2 9.1 77 34-113 5-81 (220)
18 3iot_A Maltose-binding protein 68.3 0.96 3.3E-05 47.0 -0.3 15 242-256 184-198 (449)
19 3bej_E Nuclear receptor coacti 56.8 4.6 0.00016 26.1 1.4 12 97-108 14-25 (26)
20 3iot_A Maltose-binding protein 49.5 4.4 0.00015 41.9 0.8 12 176-187 128-139 (449)
21 2prg_C Nuclear receptor coacti 30.6 19 0.00065 29.9 1.5 12 97-108 67-78 (88)
22 2i9c_A Hypothetical protein RP 22.3 84 0.0029 27.8 4.3 70 231-301 11-99 (123)
No 1
>1hx8_A Synapse-enriched clathrin adaptor protein LAP; all alpha, alpha helices repeats, coiled-coil, endocytosis/exocytosis complex; 2.20A {Drosophila melanogaster} SCOP: a.7.8.2 a.118.9.3
Probab=100.00 E-value=6.8e-73 Score=579.61 Aligned_cols=276 Identities=24% Similarity=0.437 Sum_probs=243.6
Q ss_pred hHHHHHHhhhc-ccccchhhcccCCCchHHHHHHHhcCCCCCCCCHhhHHHHHHHHhcCCCCCcHHHHHHHHHHhhccCC
Q 009073 8 KSFRKALGALK-DTTTVSLAKVNSDYKELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTH 86 (544)
Q Consensus 8 ~~~rka~GalK-D~tsiglAkv~~~~~dLdvAIvKATshde~PPKeKHVr~Il~~T~~~~p~~~v~~~v~~L~rRL~kT~ 86 (544)
++||+++|++| |+|+ .++++||+|||+|+++|||+||||+||.+|+.++ +++++|+++|.+|+ +++
T Consensus 6 ~~~~~~~~a~k~~~~~----------~~l~kaV~KAT~~~~~ppk~Khv~~ii~~t~~~~--~~~~~~~~~L~~R~-~~~ 72 (299)
T 1hx8_A 6 QTINDRLLAARHSLAG----------QGLAKSVCKATTEECIGPKKKHLDYLVHCANEPN--VSIPHLANLLIERS-QNA 72 (299)
T ss_dssp --------------------------CHHHHHHHHHSCSSSSCCCHHHHHHHHHHHHCTT--SCHHHHHHHHHHHH-TCS
T ss_pred HHHHHHHHHHhhccch----------hHHHHHHHhccCCCCCCCCHHHHHHHHHHHcCCC--CCHHHHHHHHHhhc-cCC
Confidence 69999999999 9988 4566899999999999999999999999999875 78899999999995 899
Q ss_pred ChHHHHHHHHHHHHHHhhCCcccHHHHHHhhhcCCCccccccccCCCC-----------CCCCcccHHHHHHHHHHHHHH
Q 009073 87 NWAVALKTLIVIHRALREVDPTFHEEVINYGRSRSHMLNMAHFKDDSS-----------PNAWDYSAWVRSYALFLEERL 155 (544)
Q Consensus 87 nWiValKtLillHrLLreG~p~f~eEll~~~~sr~~iL~Ls~F~D~ss-----------~~s~d~safVR~Ya~YLdeRL 155 (544)
||+|+||+|||+|||||||||.|++++. +++++|+|++|+|+++ +.+||||.|||+|++||++|+
T Consensus 73 ~w~va~K~LivlH~llreG~~~~~~~l~----~~~~~l~l~~f~D~~~~~~~~~~~~~~~~~~d~s~~Ir~Ya~yL~~r~ 148 (299)
T 1hx8_A 73 NWVVVYKSLITTHHLMAYGNERFMQYLA----SSNSTFNLSSFLDKGTVQDGGMGVPGGRMGYDMSPFIRRYAKYLNEKS 148 (299)
T ss_dssp SHHHHHHHHHHHHHHHHHSCHHHHHHHH----HTTCCCCCTTCCCCCC---CCSSCCCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhcCCHHHHHHHH----hCCcccchhhhhcccccccccccccccccccchhHHHHHHHHHHHHHH
Confidence 9999999999999999999999877663 3567999999999865 356899999999999999999
Q ss_pred HHhhhcccccccC-----CCCCCCCChHHHHhhHHHHHHHHHHHHcCccCCcccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 009073 156 ECFRVLKYDIETD-----RPRTKDLDTAELLEHLPALQLLLFRVLGCQPQGAAVHNFVIQLALSLVASESTKIYQAISDG 230 (544)
Q Consensus 156 ~~~r~~~~d~e~~-----~~~~r~l~~~~LL~~L~~LQ~LldrlL~c~p~g~a~~N~lvl~AL~llVkDS~~LY~~i~~g 230 (544)
.+|+..++|++.. ..++++|++++||++++.||+|||++++|+|.+.+.+|+|+++||++||+||++||+++|+|
T Consensus 149 ~~f~~~~~d~~~~~~~~~~~~~~~l~~~~lL~~l~~lQ~li~~ll~~~~~~~~~~n~~~~~Al~llv~Ds~~lY~~i~~g 228 (299)
T 1hx8_A 149 LSYRAMAFDFCKVKRGKEEGSLRSMNAEKLLKTLPVLQAQLDALLEFDCQSNDLSNGVINMSFMLLFRDLIRLFACYNDG 228 (299)
T ss_dssp HHHHHHSSCGGGC-----CCCTTTCCHHHHHHHHHHHHHHHHHHHTTCCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCccccccCccccchhhCCHHHHHHHHHHHHHHHHHHHCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998642 23789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCccccCCCCCChhhHHHHHHHHHh
Q 009073 231 TVNLVDKFFEMQRHDALKALDIYRRAGQQAERLSEFYEVCKSLDIGRGERFIKIEQPPASFLQAMEEYVKE 301 (544)
Q Consensus 231 iinLLe~fFeM~~~Da~kaleIYkRf~kQ~e~L~~Fy~~ck~l~~~r~~~iP~L~~~P~~lL~~LEEylrd 301 (544)
|+||||+||+|++.||++||+||+||.+|+++|++||++||++++.+ ++||+|+++|++|+++|||||++
T Consensus 229 i~~lLe~~fem~~~d~~~al~iykrf~~q~~~L~~Fy~~c~~~~~~~-~~iP~L~~~p~~ll~~Lee~l~~ 298 (299)
T 1hx8_A 229 IINLLEKYFDMNKKHARDALDLYKKFLVRMDRVGEFLKVAENVGIDK-GDIPDLTKAPSSLLDALEQHLAT 298 (299)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCG-GGSCCCCCCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcCC-CCCCCCCCCCHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999977 89999999999999999999986
No 2
>3zym_A Phosphatidylinositol-binding clathrin assembly PR vesicle-associated membrane protein...; endocytosis, synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A {Rattus norvegicus}
Probab=100.00 E-value=1.2e-67 Score=543.21 Aligned_cols=277 Identities=23% Similarity=0.430 Sum_probs=237.7
Q ss_pred hHHHHHHhhhcccccchhhcccCCCchHHHHHHHhcCCCCCCCCHhhHHHHHHHHhcCCCCCcHHHHHHHHHHhhccCCC
Q 009073 8 KSFRKALGALKDTTTVSLAKVNSDYKELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHN 87 (544)
Q Consensus 8 ~~~rka~GalKD~tsiglAkv~~~~~dLdvAIvKATshde~PPKeKHVr~Il~~T~~~~p~~~v~~~v~~L~rRL~kT~n 87 (544)
++++.-+.|.|.. |.+ +++++||+|||+|+++|||+||||+||.+|+.++ .++.+|+++|.+|++ ++|
T Consensus 11 ~~~~~~~~~~~~~-------~~~--s~l~~aV~KATs~~~~pPk~Khv~~il~~T~~~~--~~~~~i~~~L~~Rl~-~~~ 78 (310)
T 3zym_A 11 QSLTDRITAAQHS-------VTG--SAVSKTVCKATTHEIMGPKKKHLDYLIQCTNEMN--VNIPQLADSLFERTT-NSS 78 (310)
T ss_dssp -CHHHHHHHHHHC-------CHH--HHHHHHHHHHTCSSSSCCCHHHHHHHHHHHHCTT--SCHHHHHHHHHHHTT-SSC
T ss_pred ccHHHHHHHHHhc-------ccc--cHHHHHHHhcCcCCCCCCChhHHHHHHHHHccCC--CcHHHHHHHHHhhcC-CCc
Confidence 4777777777663 333 8999999999999999999999999999999875 678999999999997 899
Q ss_pred hHHHHHHHHHHHHHHhhCCcccHHHHHHhhhcCCCccccccccCCCCCCCCcccHHHHHHHHHHHHHHHHhhhccccccc
Q 009073 88 WAVALKTLIVIHRALREVDPTFHEEVINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFLEERLECFRVLKYDIET 167 (544)
Q Consensus 88 WiValKtLillHrLLreG~p~f~eEll~~~~sr~~iL~Ls~F~D~ss~~s~d~safVR~Ya~YLdeRL~~~r~~~~d~e~ 167 (544)
|+|+||+||++|||||+|||.|.++ +++++++|+|++|+|++++.+|||+.|||+|++||++|+.+|+.+++|++.
T Consensus 79 w~vv~KaLivlH~llreG~~~~l~~----~~~~~~~~~Ls~f~d~~~~~g~~~~~~Ir~Ya~yL~~Rl~~f~~~~~d~~~ 154 (310)
T 3zym_A 79 WVVVFKSLITTHHLMVYGNERFIQY----LASRNTLFNLSNFLDKSGLQGYDMSTFIRRYSRYLNEKAVSYRQVAFDFTK 154 (310)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHHH----HHHCSCCCCCTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCTTT
T ss_pred hHHHHHHHHHHHHHHhcCCHHHHHH----HHhCCCeeecccccCCCCcCcccccHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence 9999999999999999999987654 444667999999999987778999999999999999999999999999875
Q ss_pred CC----CCCCCCChHHHHhhHHHHHHHHHHHHcCccCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Q 009073 168 DR----PRTKDLDTAELLEHLPALQLLLFRVLGCQPQGAAVHNFVIQLALSLVASESTKIYQAISDGTVNLVDKFFEMQR 243 (544)
Q Consensus 168 ~~----~~~r~l~~~~LL~~L~~LQ~LldrlL~c~p~g~a~~N~lvl~AL~llVkDS~~LY~~i~~giinLLe~fFeM~~ 243 (544)
.+ .++++|++++||++++.||+|||++++|+|.+.+.+|+|+++||++||+|||+||+++|+||+||||+||||++
T Consensus 155 ~~~~~~~~~r~~~~~~Ll~~l~~lQ~lid~ll~~~~~~~~~~N~l~~~A~~llv~ds~~lY~~inegii~lLe~ffem~~ 234 (310)
T 3zym_A 155 VKRGADGVMRTMNTEKLLKTVPIIQNQMDALLDFNVNSNELTNGVINAAFMLLFKDAIRLFAAYNEGIINLLEKYFDMKK 234 (310)
T ss_dssp SCCSTTSHHHHCCHHHHHHHHHHHHHHHHHHHTSCCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSCH
T ss_pred ccCCCCCccccCCHHHHHHHHHHHHHHHHHHHcCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCH
Confidence 32 26788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCccccCCCCCChhhHHHHHHHHHh
Q 009073 244 HDALKALDIYRRAGQQAERLSEFYEVCKSLDIGRGERFIKIEQPPASFLQAMEEYVKE 301 (544)
Q Consensus 244 ~Da~kaleIYkRf~kQ~e~L~~Fy~~ck~l~~~r~~~iP~L~~~P~~lL~~LEEylrd 301 (544)
.||++||+||+||.+|+++|++||++||++|+.+. +||+|+++|++++..+|.-|.|
T Consensus 235 ~da~~al~iykrf~~Q~e~L~~Fy~~ck~l~l~~~-~iP~L~~~p~d~l~~lq~~i~e 291 (310)
T 3zym_A 235 NQCKEGLDIYKKFLTRMTRISEFLKVAEQVGIDRG-DISGSGSGHMDRVRNLQSEVEG 291 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-------------------CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC-CCCCCCcccchHHHHHHHHHHH
Confidence 99999999999999999999999999999997765 9999999999999999988876
No 3
>3zyl_A Phosphatidylinositol-binding clathrin assembly PR; endocytosis, endobrevin, synaptobrevin, VAMP2, VAMP3, AP180, membrane, adaptor protein; 1.70A {Rattus norvegicus} PDB: 3zyk_A 1hf8_A 1hfa_A* 1hg2_A* 1hg5_A*
Probab=100.00 E-value=2e-65 Score=517.65 Aligned_cols=255 Identities=25% Similarity=0.478 Sum_probs=234.7
Q ss_pred hHHHHHHhhhcccccchhhcccCCCchHHHHHHHhcCCCCCCCCHhhHHHHHHHHhcCCCCCcHHHHHHHHHHhhccCCC
Q 009073 8 KSFRKALGALKDTTTVSLAKVNSDYKELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHN 87 (544)
Q Consensus 8 ~~~rka~GalKD~tsiglAkv~~~~~dLdvAIvKATshde~PPKeKHVr~Il~~T~~~~p~~~v~~~v~~L~rRL~kT~n 87 (544)
++++.-+.+.|-. |.+ +++++||+|||+|+++|||+||||+||.+|+.++ .++.+|++.|.+|++ ++|
T Consensus 11 ~~~~~~~~~~~~~-------~~~--s~l~~aV~KATs~~~~~Pk~Khv~~il~~T~~~~--~~~~~~~~~L~~Rl~-~~~ 78 (271)
T 3zyl_A 11 QSLTDRITAAQHS-------VTG--SAVSKTVCKATTHEIMGPKKKHLDYLIQCTNEMN--VNIPQLADSLFERTT-NSS 78 (271)
T ss_dssp -CHHHHHHHHHHH-------HHH--HHHHHHHHHHTCSSSSCCCHHHHHHHHHHHHSTT--SCHHHHHHHHHHHTT-SSC
T ss_pred ccHHHHHHHHHhc-------ccc--hHHHHHHHhcCCCCCCCCCHHHHHHHHHHHccCC--CcHHHHHHHHHHHhC-CCc
Confidence 5777777777662 333 8999999999999999999999999999999875 678999999999997 899
Q ss_pred hHHHHHHHHHHHHHHhhCCcccHHHHHHhhhcCCCccccccccCCCCCCCCcccHHHHHHHHHHHHHHHHhhhccccccc
Q 009073 88 WAVALKTLIVIHRALREVDPTFHEEVINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFLEERLECFRVLKYDIET 167 (544)
Q Consensus 88 WiValKtLillHrLLreG~p~f~eEll~~~~sr~~iL~Ls~F~D~ss~~s~d~safVR~Ya~YLdeRL~~~r~~~~d~e~ 167 (544)
|+|+||+||++|||||+|||.|.+++ ++++++|+|++|+|++++.+|||++|||+|++||++|+.+|+.+++|++.
T Consensus 79 w~v~~KaLivlH~llreG~~~~l~~~----~~~~~~~~Ls~f~d~~~~~~~~~s~~Ir~Ya~yL~eRl~~f~~~~~d~~~ 154 (271)
T 3zyl_A 79 WVVVFKSLITTHHLMVYGNERFIQYL----ASRNTLFNLSNFLDKSGLQGYDMSTFIRRYSRYLNEKAVSYRQVAFDFTK 154 (271)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHHHH----HHCSCCCCCTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTT
T ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHH----HhCCCeechhccCCCCCCCcccccHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence 99999999999999999999876544 44667999999999987788999999999999999999999999999875
Q ss_pred CC----CCCCCCChHHHHhhHHHHHHHHHHHHcCccCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Q 009073 168 DR----PRTKDLDTAELLEHLPALQLLLFRVLGCQPQGAAVHNFVIQLALSLVASESTKIYQAISDGTVNLVDKFFEMQR 243 (544)
Q Consensus 168 ~~----~~~r~l~~~~LL~~L~~LQ~LldrlL~c~p~g~a~~N~lvl~AL~llVkDS~~LY~~i~~giinLLe~fFeM~~ 243 (544)
.+ .++++|++++||++++.||+|||++++|+|.+.+.+|+|+++||++||+|||+||+++|+||+||||+||||++
T Consensus 155 ~k~~~~~~~r~~~~~~Ll~~l~~lQ~lld~ll~~~~~~~~~~N~li~~A~~lLv~es~~lY~~in~gii~lLe~ffem~~ 234 (271)
T 3zyl_A 155 VKRGADGVMRTMNTEKLLKTVPIIQNQMDALLDFNVNSNELTNGVINAAFMLLFKDAIRLFAAYNEGIINLLEKYFDMKK 234 (271)
T ss_dssp SCCSTTSHHHHCCHHHHHHHHHHHHHHHHHHHTTCCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGSCH
T ss_pred cCCCCCCccccCCHHHHHHHHHHHHHHHHHHHccCcccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCh
Confidence 32 26788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccC
Q 009073 244 HDALKALDIYRRAGQQAERLSEFYEVCKSLDIGRG 278 (544)
Q Consensus 244 ~Da~kaleIYkRf~kQ~e~L~~Fy~~ck~l~~~r~ 278 (544)
.||++||+||+||.+|+++|++||++||++|++|+
T Consensus 235 ~da~~aleiykrf~~Q~~~L~~Fy~~ck~~gi~~~ 269 (271)
T 3zyl_A 235 NQCKEGLDIYKKFLTRMTRISEFLKVAEQVGIDRG 269 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCcC
Confidence 99999999999999999999999999999999886
No 4
>1eyh_A Epsin; superhelix of helices, cell cycle; 1.56A {Rattus norvegicus} SCOP: a.118.9.1 PDB: 1h0a_A* 1edu_A
Probab=99.55 E-value=1.8e-14 Score=132.76 Aligned_cols=118 Identities=15% Similarity=0.175 Sum_probs=98.4
Q ss_pred CCchHHHHHHHhcCCCCCCCCHhhHHHHHHHHhcCCCCCcHHHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHhhCCccc
Q 009073 31 DYKELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSK-THNWAVALKTLIVIHRALREVDPTF 109 (544)
Q Consensus 31 ~~~dLdvAIvKATshde~PPKeKHVr~Il~~T~~~~p~~~v~~~v~~L~rRL~k-T~nWiValKtLillHrLLreG~p~f 109 (544)
+|++.++.|..|||++.++|+.+++.+|..+|++. .++..++..|.+||.. .++|.+++|+|+|||.||+.|++.|
T Consensus 2 ~ys~~E~~VreAT~~d~wGP~~~~m~eIa~~T~~~---~~~~~Im~~l~kRL~d~~k~Wr~vyKaL~lleyLl~nGse~v 78 (144)
T 1eyh_A 2 NYSEAEIKVREATSNDPWGPSSSLMSEIADLTYNV---VAFSEIMSMIWKRLNDHGKNWRHVYKAMTLMEYLIKTGSERV 78 (144)
T ss_dssp CCCHHHHHHHHHTCSSSSCCCHHHHHHHHHHTTSH---HHHHHHHHHHHHHHSCCGGGHHHHHHHHHHHHHHHHHSCHHH
T ss_pred CCCHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCH---hhHHHHHHHHHHHHccCCcchHHHhHHHHHHHHHHHhCCHHH
Confidence 47899999999999999999999999999999875 5788899999999974 3699999999999999999999988
Q ss_pred HHHHHHhhhcCCCccccccccCCCCCCCCcccHHHHHHHHHHHHHH
Q 009073 110 HEEVINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFLEERL 155 (544)
Q Consensus 110 ~eEll~~~~sr~~iL~Ls~F~D~ss~~s~d~safVR~Ya~YLdeRL 155 (544)
..++...+. .+..|.+|.-. ...+.|.+..||.+|++|.+-|
T Consensus 79 v~~~~~~~~---~i~~L~~F~y~-d~~g~D~G~~VR~kak~l~~Ll 120 (144)
T 1eyh_A 79 SQQCKENMY---AVQTLKDFQYV-DRDGKDQGVNVREKAKQLVALL 120 (144)
T ss_dssp HHHHHHTHH---HHHGGGGCCCB-CTTSCBCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhH---HHhhhccceee-CCCccchHHHHHHHHHHHHHHH
Confidence 776643322 36677887421 1356799999999999994443
No 5
>1inz_A EPS15-interacting portein(epsin); alpha-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.118.9.1
Probab=99.55 E-value=5.8e-15 Score=136.66 Aligned_cols=119 Identities=15% Similarity=0.175 Sum_probs=100.0
Q ss_pred CCchHHHHHHHhcCCCCCCCCHhhHHHHHHHHhcCCCCCcHHHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHhhCCccc
Q 009073 31 DYKELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSK-THNWAVALKTLIVIHRALREVDPTF 109 (544)
Q Consensus 31 ~~~dLdvAIvKATshde~PPKeKHVr~Il~~T~~~~p~~~v~~~v~~L~rRL~k-T~nWiValKtLillHrLLreG~p~f 109 (544)
++++.++.|..|||++.++|+.+++.+|..+|++. .++..++..|.+||.. .++|.+++|+|+|+|.||+.|++.|
T Consensus 20 ~~s~~E~~VreAT~~d~wGP~~~~m~eIa~~T~~~---~~~~eIm~~l~kRL~d~~k~WR~vyKaL~lleyLl~nGse~v 96 (148)
T 1inz_A 20 NYSEAEIKVREATSNDPWGPSSSLMSEIADLTYNV---VAFSEIMSMIWKRLNDHGKNWRHVYKAMTLMEYLIKTGSERV 96 (148)
T ss_dssp SCCCHHHHHHHHSCCCSCCCCSCHHHHHHHHHTSS---HHHHHHHHHHHHGGGCCSSCTHHHHHHHHHHHHHHHTTCHHH
T ss_pred CCCHHHHHHHHHhCCCCCCcCHHHHHHHHHHhCCH---hhHHHHHHHHHHHHccCCcchhHhhHHHHHHHHHHHhCCHHH
Confidence 57999999999999999999999999999999985 5788899999999974 4799999999999999999999988
Q ss_pred HHHHHHhhhcCCCccccccccCCCCCCCCcccHHHHHHHHHHHHHHH
Q 009073 110 HEEVINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFLEERLE 156 (544)
Q Consensus 110 ~eEll~~~~sr~~iL~Ls~F~D~ss~~s~d~safVR~Ya~YLdeRL~ 156 (544)
..++...+. .+..|.+|.-. ...+.|.+..||.||++|.+-|.
T Consensus 97 v~~~r~~~~---~I~~L~~F~y~-d~~g~D~G~nVR~kAk~l~~LL~ 139 (148)
T 1inz_A 97 SQQCKENMY---AVQTLKDFQYV-DRDGKDQGVNVREKAKQLVALLR 139 (148)
T ss_dssp HHHHHHTHH---HHHHHHHCCCC-CSSCCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHhHH---HHHhhcceeee-CCCCcCchHHHHHHHHHHHHHhC
Confidence 776643322 36677776421 13568999999999999987764
No 6
>1xgw_A Epsin 4; ENTH, enthoprotin, clathrin-associated, endocytosis; 1.90A {Homo sapiens} PDB: 2qy7_A 2v8s_E
Probab=99.30 E-value=1.7e-11 Score=116.27 Aligned_cols=117 Identities=14% Similarity=0.152 Sum_probs=95.6
Q ss_pred CCchHHHHHHHhcCCCCCCCCHhhHHHHHHHHhcCCCCCcHHHHHHHHHHhh-c-cCCChHHHHHHHHHHHHHHhhCCcc
Q 009073 31 DYKELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRL-S-KTHNWAVALKTLIVIHRALREVDPT 108 (544)
Q Consensus 31 ~~~dLdvAIvKATshde~PPKeKHVr~Il~~T~~~~p~~~v~~~v~~L~rRL-~-kT~nWiValKtLillHrLLreG~p~ 108 (544)
++++.++.|..|||++.++|..+++.+|..+|+.. .++..++..|.+|| . +.++|.+++|+|+||+.||+.|++.
T Consensus 31 ~ys~~E~kVreATnnd~wGPs~~~m~eIa~~T~~~---~~~~~Im~~L~kRl~~~~~k~WR~vyKaL~LLeYLl~nGse~ 107 (176)
T 1xgw_A 31 NYSEIESKVREATNDDPWGPSGQLMGEIAKATFMY---EQFPELMNMLWSRMLKDNKKNWRRVYKSLLLLAYLIRNGSER 107 (176)
T ss_dssp CCCHHHHHHHHHTCSCSSCCCHHHHHHHHHHTTCT---TTHHHHHHHHHHHHHSSCTTCHHHHHHHHHHHHHHHHHSCHH
T ss_pred CCCHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcCh---hhHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhCCHH
Confidence 58999999999999999999999999999999986 47889999999996 4 3589999999999999999999988
Q ss_pred cHHHHHHhhhcCCCccccccccCCCCCCCCcccHHHHHHHHHHHHH
Q 009073 109 FHEEVINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFLEER 154 (544)
Q Consensus 109 f~eEll~~~~sr~~iL~Ls~F~D~ss~~s~d~safVR~Ya~YLdeR 154 (544)
|..++...+. .|-.|.+|.-- ...+.|.+..||..|+.|.+-
T Consensus 108 vv~~~r~~i~---~I~~L~~F~y~-D~~G~D~G~~VR~kAk~i~~L 149 (176)
T 1xgw_A 108 VVTSAREHIY---DLRSLENYHFV-DEHGKDQGINIRQKVKELVEF 149 (176)
T ss_dssp HHHHHHHTHH---HHHGGGGCCCB-CTTSCBCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHH---HHHhhccCeeE-CCCCCChHHHHHHHHHHHHHH
Confidence 7776633221 13346666421 125689999999999999443
No 7
>3onk_A Epsin-3, ENT3; helix, protein transport; 2.09A {Saccharomyces cerevisiae} PDB: 3onl_A
Probab=99.30 E-value=1.1e-11 Score=114.98 Aligned_cols=120 Identities=16% Similarity=0.190 Sum_probs=94.8
Q ss_pred ccCCCchHHHHHHHhcCCCCCCCCHhhHHHHHHHHhcCCCCCcHHHHHHHHHHhhcc--CCChHHHHHHHHHHHHHHhhC
Q 009073 28 VNSDYKELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSK--THNWAVALKTLIVIHRALREV 105 (544)
Q Consensus 28 v~~~~~dLdvAIvKATshde~PPKeKHVr~Il~~T~~~~p~~~v~~~v~~L~rRL~k--T~nWiValKtLillHrLLreG 105 (544)
|.-+|++.++.|..|||.+.++|..+++.+|..+|++. .++..++..|.+||.. .++|.+++|||+|++.||+.|
T Consensus 5 ~v~~ys~~E~kVreAT~nd~wGp~~~~m~eIa~~T~~~---~~~~eIm~~l~kRL~d~~~k~WR~vyKaL~lLeyLl~nG 81 (150)
T 3onk_A 5 VDPNYTEMEGKVREATNNEPWGASSTLMDQISQGTYNF---REREEILSMIFRRFTEKAGSEWRQIYKALQLLDYLIKHG 81 (150)
T ss_dssp ---CCCHHHHHHHHHTSSCSSCCCHHHHHHHHHHTTSH---HHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHS
T ss_pred hhcCCCHHHHHHHHHhCCCCCCcCHHHHHHHHHHhCCH---HHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHhC
Confidence 33468999999999999999999999999999999975 4678899999999974 258999999999999999999
Q ss_pred CcccHHHHHHhhhcCCCccccccccCCCCCCCCcccHHHHHHHHHHHHH
Q 009073 106 DPTFHEEVINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFLEER 154 (544)
Q Consensus 106 ~p~f~eEll~~~~sr~~iL~Ls~F~D~ss~~s~d~safVR~Ya~YLdeR 154 (544)
++.|..++..++. .+-.|.+|.-. ...+.|.+.-||..|+.|-+-
T Consensus 82 se~vv~~~r~~~~---~i~~L~~F~~~-d~~G~D~G~~VR~kak~l~~L 126 (150)
T 3onk_A 82 SERFIDDTRNSIN---LIRILETFHYI-DSQGRDQGINVRTRVKALIEL 126 (150)
T ss_dssp CHHHHHHHHTTHH---HHHGGGGCCCB-CTTSCBCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH---HHHhhhccccc-CCCCCchHHHHHHHHHHHHHH
Confidence 9887766632221 13336666422 124678999999999999433
No 8
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=98.54 E-value=5.2e-07 Score=82.68 Aligned_cols=115 Identities=18% Similarity=0.175 Sum_probs=92.6
Q ss_pred HHHHHHHhcCCCCCCCCHhhHHHHHHHHhcCCCCCc-HHHHHHHHHHhhccCCChHHHHHHHHHHHHHHhhCCcccHHHH
Q 009073 35 LDIAIVKATNHVERPAKEKHIRAVFASISATRPRAD-VAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHEEV 113 (544)
Q Consensus 35 LdvAIvKATshde~PPKeKHVr~Il~~T~~~~p~~~-v~~~v~~L~rRL~kT~nWiValKtLillHrLLreG~p~f~eEl 113 (544)
-.+.|.+||+.++.||----+.+|...|+.+. .+ +.+++..|.+||.+ ++|.|.+|+|-+|-.|++.|++.|+.++
T Consensus 12 ~~~~V~~ATs~d~~~~pgylm~EIA~~T~~s~--~~~~~eim~~L~kRL~~-k~~~vk~KaL~lL~yL~~~Gs~~f~~~~ 88 (140)
T 1vdy_A 12 RSRMIDAVTSDEDKVAPVYKLEEICDLLRSSH--VSIVKEFSEFILKRLDN-KSPIVKQKALRLIKYAVGKSGSEFRREM 88 (140)
T ss_dssp HHHHHHHTTCSCSSCCCHHHHHHHHHHHHHSC--HHHHHHHHHHHHHHHTS-SSHHHHHHHHHHHHHHTTTSCHHHHHHH
T ss_pred HHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcc--hhHHHHHHHHHHHHhcC-CCcceeehHHHHHHHHHHhCCHHHHHHH
Confidence 34679999999999999888999999998863 23 46788999999964 7899999999999999999999998777
Q ss_pred HHhhhcCCCccccccccCCCCC-CCCcccHHHHHHHHHHHHHH
Q 009073 114 INYGRSRSHMLNMAHFKDDSSP-NAWDYSAWVRSYALFLEERL 155 (544)
Q Consensus 114 l~~~~sr~~iL~Ls~F~D~ss~-~s~d~safVR~Ya~YLdeRL 155 (544)
...+. .|-.+.+|+....+ .+.+.+..||.-|+=|-+-|
T Consensus 89 r~~~~---~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ll 128 (140)
T 1vdy_A 89 QRNSV---AVRNLFHYKGHPDPLKGDALNKAVRETAHETISAI 128 (140)
T ss_dssp HHTTH---HHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHHH
T ss_pred HHhHH---HHHHHHhcCCCCCcccccchhHHHHHHHHHHHHHH
Confidence 54332 25667788754333 56899999999998886655
No 9
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=96.05 E-value=0.018 Score=54.08 Aligned_cols=78 Identities=23% Similarity=0.285 Sum_probs=67.9
Q ss_pred chHHHHHHHhcCCCCCCCCHhhHHHHHHHHhcCCCCCcHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHhhCCcccHHH
Q 009073 33 KELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHEE 112 (544)
Q Consensus 33 ~dLdvAIvKATshde~PPKeKHVr~Il~~T~~~~p~~~v~~~v~~L~rRL~kT~nWiValKtLillHrLLreG~p~f~eE 112 (544)
..++..|.|||+....-|+--.+-+|........ .....++++|.+||. .+|..|++-+|.|+.-|+..+...|..|
T Consensus 12 s~~~~~IekATs~~l~~~Dw~~ileicD~I~~~~--~~~k~A~ral~krl~-~~n~~vql~AL~LLd~~vkNCG~~Fh~e 88 (171)
T 1juq_A 12 ESLESWLNKATNPSNRQEDWEYIIGFCDQINKEL--EGPQIAVRLLAHKIQ-SPQEWEALQALTVLEACMKNCGRRFHNE 88 (171)
T ss_dssp CCHHHHHHHHTCTTCSSCCHHHHHHHHHHHHHST--THHHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHSHHHHHHH
T ss_pred CcHHHHHHHHcCCCCCCcCHHHHHHHHHHHHcCC--ccHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHcCHHHHHH
Confidence 6799999999999988899999999888887653 456788999999995 6899999999999999999988878766
Q ss_pred H
Q 009073 113 V 113 (544)
Q Consensus 113 l 113 (544)
+
T Consensus 89 v 89 (171)
T 1juq_A 89 V 89 (171)
T ss_dssp H
T ss_pred H
Confidence 6
No 10
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=95.90 E-value=0.033 Score=51.44 Aligned_cols=79 Identities=19% Similarity=0.214 Sum_probs=68.1
Q ss_pred chHHHHHHHhcCCCCCCCCHhhHHHHHHHHhcCCCCCcHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHhhCCcccHHH
Q 009073 33 KELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHEE 112 (544)
Q Consensus 33 ~dLdvAIvKATshde~PPKeKHVr~Il~~T~~~~p~~~v~~~v~~L~rRL~kT~nWiValKtLillHrLLreG~p~f~eE 112 (544)
..++..|.|||+....-|+--.+-+|........ .....++++|.+||...+|..|++-+|.|+.-|+..+.+.|..|
T Consensus 15 s~~~~~IekATs~~l~~~Dw~~~leicD~I~~~~--~~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~e 92 (157)
T 1elk_A 15 SPVGQRIEKATDGSLQSEDWALNMEICDIINETE--EGPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVL 92 (157)
T ss_dssp SHHHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSS--SHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred cHHHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCC--ccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 3799999999999988889888888888776653 45688999999999645899999999999999999998888776
Q ss_pred H
Q 009073 113 V 113 (544)
Q Consensus 113 l 113 (544)
+
T Consensus 93 v 93 (157)
T 1elk_A 93 V 93 (157)
T ss_dssp H
T ss_pred H
Confidence 6
No 11
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=95.67 E-value=0.044 Score=49.66 Aligned_cols=78 Identities=19% Similarity=0.346 Sum_probs=67.2
Q ss_pred chHHHHHHHhcCCCCCCCCHhhHHHHHHHHhcCCCCCcHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHhhCCcccHHH
Q 009073 33 KELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHEE 112 (544)
Q Consensus 33 ~dLdvAIvKATshde~PPKeKHVr~Il~~T~~~~p~~~v~~~v~~L~rRL~kT~nWiValKtLillHrLLreG~p~f~eE 112 (544)
..++..|.|||+....-|+--.+-+|........ .....++++|.+||. .+|..|++-+|.|+.-|+..+.+.|..|
T Consensus 4 ~p~d~~iekAT~~~l~~~dw~~ileicD~I~~~~--~~~k~a~rai~Krl~-~~n~~~ql~AL~LLe~~vkNcG~~f~~e 80 (140)
T 3ldz_A 4 NPFDQDVEKATSEMNTAEDWGLILDICDKVGQSR--TGPKDCLRSIMRRVN-HKDPHVAMQALTLLGACVSNCGKIFHLE 80 (140)
T ss_dssp CTTHHHHHHHTCTTSSSCCHHHHHHHHHHHTTST--THHHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred CcHHHHHHHHcCCCCCCcCHHHHHHHHHHHHCCC--cCHHHHHHHHHHHHc-CCChHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 4578999999999988899999999888887653 456889999999996 5789999999999999999999888766
Q ss_pred H
Q 009073 113 V 113 (544)
Q Consensus 113 l 113 (544)
+
T Consensus 81 v 81 (140)
T 3ldz_A 81 V 81 (140)
T ss_dssp H
T ss_pred H
Confidence 5
No 12
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=95.66 E-value=0.047 Score=50.34 Aligned_cols=79 Identities=23% Similarity=0.227 Sum_probs=68.9
Q ss_pred chHHHHHHHhcCCCCCCCCHhhHHHHHHHHhcCCCCCcHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHhhCCcccHHH
Q 009073 33 KELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHEE 112 (544)
Q Consensus 33 ~dLdvAIvKATshde~PPKeKHVr~Il~~T~~~~p~~~v~~~v~~L~rRL~kT~nWiValKtLillHrLLreG~p~f~eE 112 (544)
+.++..|.|||+....-|+--.+-+|........ .....++++|.+||...+|..|++-+|.|+.-|+..+...|..|
T Consensus 15 t~~~~~IekATs~~l~~~Dw~~ileicD~In~~~--~~pkeA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~e 92 (152)
T 3rru_A 15 TSVGHLIEKATFAGVQTEDWGQFMHICDIINTTQ--DGPKDAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSL 92 (152)
T ss_dssp SHHHHHHHHHTCSSCCSCCHHHHHHHHHHHHHST--THHHHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred ChHHHHHHHHcCCCCCCccHHHHHHHHHHHhCCC--ccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 6799999999999998899999888888777653 45688999999999755688899999999999999999999877
Q ss_pred H
Q 009073 113 V 113 (544)
Q Consensus 113 l 113 (544)
+
T Consensus 93 i 93 (152)
T 3rru_A 93 I 93 (152)
T ss_dssp H
T ss_pred H
Confidence 7
No 13
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=95.52 E-value=0.044 Score=50.95 Aligned_cols=78 Identities=23% Similarity=0.328 Sum_probs=66.8
Q ss_pred chHHHHHHHhcCCCCCCCCHhhHHHHHHHHhcCCCCCcHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHhhCCcccHHH
Q 009073 33 KELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHEE 112 (544)
Q Consensus 33 ~dLdvAIvKATshde~PPKeKHVr~Il~~T~~~~p~~~v~~~v~~L~rRL~kT~nWiValKtLillHrLLreG~p~f~eE 112 (544)
..++..|.|||+....-|+--.+-+|........ .....++++|.+||. .+|..|++-+|.|+.-|+..+...|..|
T Consensus 14 ~p~~~~IekATs~~~~~~Dw~~~leicD~I~~~~--~~~keA~ral~krl~-~~n~~vql~AL~LLd~~vkNcG~~Fh~e 90 (163)
T 1x5b_A 14 NPFEQDVEKATNEYNTTEDWSLIMDICDKVGSTP--NGAKDCLKAIMKRVN-HKVPHVALQALTLLGACVANCGKIFHLE 90 (163)
T ss_dssp CTTHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSS--SHHHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred ChHHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCC--ccHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 4578999999999988899999988888877653 456889999999995 5788999999999999999988888766
Q ss_pred H
Q 009073 113 V 113 (544)
Q Consensus 113 l 113 (544)
+
T Consensus 91 v 91 (163)
T 1x5b_A 91 V 91 (163)
T ss_dssp H
T ss_pred H
Confidence 6
No 14
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=95.52 E-value=0.07 Score=48.99 Aligned_cols=79 Identities=19% Similarity=0.283 Sum_probs=69.5
Q ss_pred CchHHHHHHHhcCCCCCCCCHhhHHHHHHHHhcCCCCCcHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHhhCCcccHH
Q 009073 32 YKELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHE 111 (544)
Q Consensus 32 ~~dLdvAIvKATshde~PPKeKHVr~Il~~T~~~~p~~~v~~~v~~L~rRL~kT~nWiValKtLillHrLLreG~p~f~e 111 (544)
...++..|.|||+....-|+--.+-+|........ .....++++|.+||. .+|..|++-+|.|+.-|+..+...|..
T Consensus 9 ~~~~~~~IekATs~~l~~~dw~~ileicD~I~~~~--~~pk~a~ral~krl~-~~n~~v~l~AL~LLe~cvkNCG~~fh~ 85 (149)
T 3g2s_A 9 PETLEARINRATNPLNKELDWASINGFCEQLNEDF--EGPPLATRLLAHKIQ-SPQEWEAIQALTVLETCMKSCGKRFHD 85 (149)
T ss_dssp CCCHHHHHHHHSCTTCSSCCHHHHHHHHHHGGGSS--SHHHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHCCHHHHH
T ss_pred CCcHHHHHHHHcCCCCCCcCHHHHHHHHHHHHCCC--CcHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 47799999999999998899999999888887653 456888999999996 689999999999999999999988876
Q ss_pred HH
Q 009073 112 EV 113 (544)
Q Consensus 112 El 113 (544)
|+
T Consensus 86 ei 87 (149)
T 3g2s_A 86 EV 87 (149)
T ss_dssp HH
T ss_pred HH
Confidence 66
No 15
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=95.43 E-value=0.05 Score=49.81 Aligned_cols=76 Identities=20% Similarity=0.231 Sum_probs=66.0
Q ss_pred HHHHHHHhcCCCCCCCCHhhHHHHHHHHhcCCCCCcHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHhhCCcccHHHH
Q 009073 35 LDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHEEV 113 (544)
Q Consensus 35 LdvAIvKATshde~PPKeKHVr~Il~~T~~~~p~~~v~~~v~~L~rRL~kT~nWiValKtLillHrLLreG~p~f~eEl 113 (544)
++..|.|||+....-|+--.+-+|........ .....++++|.+||. .+|..|++-+|.|+.-|+..+.+.|..|+
T Consensus 2 ~~~~iekATs~~l~~~dw~~~leicD~I~~~~--~~~k~a~rai~krl~-~~n~~vql~AL~LLe~~vkNCG~~fh~ev 77 (148)
T 1mhq_A 2 LELWLNKATDPSMSEQDWSAIQNFCEQVNTDP--NGPTHAPWLLAHKIQ-SPQEKEALYALTVLEMCMNHCGEKFHSEV 77 (148)
T ss_dssp HHHHHHHHHCTTCSSCCHHHHHHHHHHHHHSS--HHHHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHHHHHcCC--ccHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 67899999999888899999888888876653 456788999999995 68999999999999999999888887666
No 16
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=95.15 E-value=0.078 Score=51.68 Aligned_cols=79 Identities=22% Similarity=0.296 Sum_probs=68.1
Q ss_pred CchHHHHHHHhcCCCCCCCCHhhHHHHHHHHhcCCCCCcHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHhhCCcccHH
Q 009073 32 YKELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHE 111 (544)
Q Consensus 32 ~~dLdvAIvKATshde~PPKeKHVr~Il~~T~~~~p~~~v~~~v~~L~rRL~kT~nWiValKtLillHrLLreG~p~f~e 111 (544)
.+.++..|.|||+....-|+--.+-+|-....... .....++.+|.+||. .+|..|++-+|.|+.-++..+...|..
T Consensus 6 ~~~~~~~i~kAT~~~~~~~dw~~ileicD~I~~~~--~~~k~a~ral~krl~-~~n~~v~l~aL~LLe~~vkNcG~~f~~ 82 (226)
T 3zyq_A 6 SGTFERLLDKATSQLLLETDWESILQICDLIRQGD--TQAKYAVNSIKKKVN-DKNPHVALYALEVMESVVKNCGQTVHD 82 (226)
T ss_dssp -CHHHHHHHHHTCTTCSSCCHHHHHHHHHHHHTTS--SCHHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred CchHHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCC--ccHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHhcchHHHH
Confidence 46899999999999988899999988888877642 446788999999996 689999999999999999999988876
Q ss_pred HH
Q 009073 112 EV 113 (544)
Q Consensus 112 El 113 (544)
|+
T Consensus 83 ei 84 (226)
T 3zyq_A 83 EV 84 (226)
T ss_dssp HH
T ss_pred hh
Confidence 66
No 17
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=94.66 E-value=0.11 Score=50.23 Aligned_cols=77 Identities=18% Similarity=0.242 Sum_probs=66.0
Q ss_pred hHHHHHHHhcCCCCCCCCHhhHHHHHHHHhcCCCCCcHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHhhCCcccHHHH
Q 009073 34 ELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHEEV 113 (544)
Q Consensus 34 dLdvAIvKATshde~PPKeKHVr~Il~~T~~~~p~~~v~~~v~~L~rRL~kT~nWiValKtLillHrLLreG~p~f~eEl 113 (544)
.++..|.|||++...-|+-..+-+|........ .....++.+|.+||. .+|..|++-+|.|+.-++..+...|..|+
T Consensus 5 ~~~~~ie~AT~~~~~~~dw~~~leicd~i~~~~--~~~k~a~r~l~krl~-~~n~~~~l~aL~Lle~~vkNcG~~f~~ev 81 (220)
T 1dvp_A 5 SFCKNLENATSHLRLEPDWPSILLICDEINQKD--VTPKNAFAAIKKKMN-SPNPHSSCYSLLVLESIVKNCGAPVHEEV 81 (220)
T ss_dssp HHHHHHHHHHCTTCSSCCHHHHHHHHHHHHTTS--SCHHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred hHHHHHHHHcCCCCCCcCHHHHHHHHHhhcCCC--cCHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHhccCHHHHHHH
Confidence 388999999999988899999999888887543 456888999999995 58999999999999999999887776555
No 18
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=68.35 E-value=0.96 Score=47.02 Aligned_cols=15 Identities=13% Similarity=0.056 Sum_probs=8.1
Q ss_pred CHHHHHHHHHHHHHH
Q 009073 242 QRHDALKALDIYRRA 256 (544)
Q Consensus 242 ~~~Da~kaleIYkRf 256 (544)
...+.+++++.+++.
T Consensus 184 ~~~~~~~al~~~~~l 198 (449)
T 3iot_A 184 DNAGAKAGLTFLVDL 198 (449)
T ss_dssp SSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 345566666655444
No 19
>3bej_E Nuclear receptor coactivator 1; FXR, BAR, NR1H4, bIle acid receptor, NHR, alternative splicing, DNA-binding, metal-binding nucleus, repressor; HET: MUF; 1.90A {Homo sapiens} PDB: 1fm9_B* 1k74_B* 1fm6_B* 1p8d_C* 1rdt_B* 1nrl_C* 3ipq_B* 3ips_C* 3ipu_C* 4dm6_E* 4dm8_C* 3kmg_B* 2hfp_B* 1k7l_B*
Probab=56.83 E-value=4.6 Score=26.06 Aligned_cols=12 Identities=42% Similarity=0.855 Sum_probs=10.2
Q ss_pred HHHHHHhhCCcc
Q 009073 97 VIHRALREVDPT 108 (544)
Q Consensus 97 llHrLLreG~p~ 108 (544)
++||||++|.|.
T Consensus 14 ILHrLLQ~~sP~ 25 (26)
T 3bej_E 14 ILHRLLQEGSPS 25 (26)
T ss_pred HHHHHHHcCCCC
Confidence 589999999874
No 20
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=49.46 E-value=4.4 Score=41.94 Aligned_cols=12 Identities=17% Similarity=-0.050 Sum_probs=5.8
Q ss_pred ChHHHHhhHHHH
Q 009073 176 DTAELLEHLPAL 187 (544)
Q Consensus 176 ~~~~LL~~L~~L 187 (544)
+.++|++....|
T Consensus 128 Twdel~~~a~~l 139 (449)
T 3iot_A 128 TWEEIPALDKEL 139 (449)
T ss_dssp BGGGHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 335555544444
No 21
>2prg_C Nuclear receptor coactivator SRC-1, peroxisome proliferator activated receptor gamma; complex (thiazolidinedione/receptor), ligand-binding domain; HET: BRL; 2.30A {Homo sapiens} SCOP: j.112.1.1
Probab=30.65 E-value=19 Score=29.95 Aligned_cols=12 Identities=42% Similarity=0.855 Sum_probs=10.5
Q ss_pred HHHHHHhhCCcc
Q 009073 97 VIHRALREVDPT 108 (544)
Q Consensus 97 llHrLLreG~p~ 108 (544)
++||||++|.|.
T Consensus 67 ILHrLLQ~gSP~ 78 (88)
T 2prg_C 67 ILHRLLQEGSPS 78 (88)
T ss_dssp HHHHHHHSSCCC
T ss_pred HHHHHHhcCChH
Confidence 589999999875
No 22
>2i9c_A Hypothetical protein RPA1889; structural genomics, SAD, PSI-2, protein structure initiativ midwest center for structural genomics; HET: MSE; 2.00A {Rhodopseudomonas palustris} SCOP: a.118.1.25
Probab=22.33 E-value=84 Score=27.76 Aligned_cols=70 Identities=20% Similarity=0.208 Sum_probs=46.3
Q ss_pred HHHHHHHHhcCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-ccccC-----cccc-----------CCCCCChhh
Q 009073 231 TVNLVDKFFEMQ--RHDALKALDIYRRAGQQAERLSEFYEVCKSL-DIGRG-----ERFI-----------KIEQPPASF 291 (544)
Q Consensus 231 iinLLe~fFeM~--~~Da~kaleIYkRf~kQ~e~L~~Fy~~ck~l-~~~r~-----~~iP-----------~L~~~P~~l 291 (544)
+-.|+++|-+.. ..+|....+ +++|.+++.++..+|+.-+.. |=.|. ++-| .|...|..=
T Consensus 11 v~~Lv~~F~~~~i~q~eA~~~~d-~~~~Nr~~~kl~~~~~eLk~r~Gd~R~aLl~Ll~H~n~~VRl~AA~~~L~~~p~~A 89 (123)
T 2i9c_A 11 TQDLVALFAKVTVEQDDALLGNQ-ISRFNRLFGVMAEIADELKARDGDQRTALLSLFEYPNMQVRLQAAKLTLAVAPVKA 89 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHHHSTTCGGGGGGGGGGSSCHHHHHHHHHTTTTTCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHccc-HHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhCCCccHHHHHHHHHHhhChHHH
Confidence 345777888876 456666655 689999999999999998855 32332 1222 344446666
Q ss_pred HHHHHHHHHh
Q 009073 292 LQAMEEYVKE 301 (544)
Q Consensus 292 L~~LEEylrd 301 (544)
...||+-.+.
T Consensus 90 ~~vLe~ia~~ 99 (123)
T 2i9c_A 90 REQLEAIVSS 99 (123)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhC
Confidence 6667766654
Done!