Query 009074
Match_columns 544
No_of_seqs 42 out of 44
Neff 2.2
Searched_HMMs 46136
Date Thu Mar 28 20:06:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009074.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009074hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07058 Myosin_HC-like: Myosi 100.0 5E-156 1E-160 1146.8 33.7 341 155-499 1-351 (351)
2 TIGR02169 SMC_prok_A chromosom 97.5 0.24 5.3E-06 54.4 31.9 34 36-69 676-709 (1164)
3 TIGR02169 SMC_prok_A chromosom 97.4 0.35 7.6E-06 53.2 30.5 106 38-145 174-280 (1164)
4 TIGR02168 SMC_prok_B chromosom 97.3 0.36 7.8E-06 52.7 31.1 38 34-71 670-707 (1179)
5 PRK02224 chromosome segregatio 97.3 0.43 9.3E-06 52.4 29.0 29 213-241 405-433 (880)
6 PF07888 CALCOCO1: Calcium bin 97.1 0.4 8.8E-06 52.6 26.5 95 104-208 208-302 (546)
7 TIGR00606 rad50 rad50. This fa 97.0 1.1 2.5E-05 52.3 29.9 151 32-182 742-909 (1311)
8 PF09726 Macoilin: Transmembra 96.8 0.4 8.6E-06 53.6 24.0 184 101-299 417-617 (697)
9 TIGR02168 SMC_prok_B chromosom 96.7 1.3 2.9E-05 48.4 31.8 32 41-72 670-701 (1179)
10 PF15619 Lebercilin: Ciliary p 96.6 0.1 2.2E-06 49.9 15.1 130 151-293 9-142 (194)
11 KOG0161 Myosin class II heavy 96.4 1.1 2.3E-05 55.3 25.5 193 36-237 1374-1586(1930)
12 PHA02562 46 endonuclease subun 96.4 0.66 1.4E-05 48.0 20.8 74 164-237 302-382 (562)
13 PF12128 DUF3584: Protein of u 96.4 3.1 6.6E-05 48.7 27.9 40 195-234 749-792 (1201)
14 TIGR00606 rad50 rad50. This fa 96.3 3.4 7.4E-05 48.5 29.8 15 301-315 1079-1093(1311)
15 PF15619 Lebercilin: Ciliary p 96.3 0.59 1.3E-05 44.8 18.1 118 100-238 59-182 (194)
16 PRK03918 chromosome segregatio 96.0 3.2 7E-05 45.5 31.7 19 272-290 462-480 (880)
17 PRK04863 mukB cell division pr 95.9 6 0.00013 48.0 28.8 129 161-290 383-527 (1486)
18 COG1196 Smc Chromosome segrega 95.9 4.5 9.8E-05 47.1 26.1 111 156-271 392-513 (1163)
19 PRK11637 AmiB activator; Provi 95.8 2.9 6.2E-05 43.2 21.7 39 162-200 192-230 (428)
20 PHA02562 46 endonuclease subun 95.3 4.3 9.4E-05 42.1 21.5 24 215-238 381-404 (562)
21 PF00038 Filament: Intermediat 95.3 3.1 6.8E-05 40.4 21.2 106 157-277 198-309 (312)
22 KOG0977 Nuclear envelope prote 95.2 4.1 9E-05 45.1 21.6 109 61-178 112-221 (546)
23 PRK02224 chromosome segregatio 95.1 7 0.00015 43.2 29.3 43 104-146 407-449 (880)
24 PF09755 DUF2046: Uncharacteri 95.1 5.2 0.00011 41.7 21.5 97 188-294 155-254 (310)
25 KOG0161 Myosin class II heavy 94.9 15 0.00032 46.1 28.5 244 31-286 835-1114(1930)
26 COG1196 Smc Chromosome segrega 94.7 11 0.00025 43.9 29.1 42 37-78 175-216 (1163)
27 PF00261 Tropomyosin: Tropomyo 94.5 4.9 0.00011 38.7 21.0 43 273-315 173-215 (237)
28 KOG0612 Rho-associated, coiled 94.4 6 0.00013 47.5 21.4 201 72-317 450-687 (1317)
29 PF07888 CALCOCO1: Calcium bin 94.3 7.9 0.00017 43.0 21.1 74 107-183 141-214 (546)
30 PF09726 Macoilin: Transmembra 94.1 4.4 9.5E-05 45.7 18.9 135 65-202 495-656 (697)
31 PF05667 DUF812: Protein of un 94.0 2.9 6.3E-05 46.3 17.1 126 153-286 400-529 (594)
32 PF00038 Filament: Intermediat 93.7 7.4 0.00016 37.8 24.7 95 98-192 43-148 (312)
33 PRK09039 hypothetical protein; 93.6 10 0.00022 39.1 21.4 41 155-195 138-178 (343)
34 PF10174 Cast: RIM-binding pro 93.2 12 0.00027 42.9 20.6 231 37-288 6-264 (775)
35 PRK11637 AmiB activator; Provi 92.9 13 0.00028 38.5 23.7 23 215-237 228-250 (428)
36 COG2433 Uncharacterized conser 92.6 4.3 9.3E-05 45.7 15.8 124 58-181 330-501 (652)
37 KOG0996 Structural maintenance 92.4 15 0.00033 44.2 20.3 94 189-289 907-1004(1293)
38 PRK03918 chromosome segregatio 92.2 22 0.00047 39.3 28.1 12 303-314 418-429 (880)
39 PRK04863 mukB cell division pr 91.9 39 0.00084 41.5 25.9 145 152-318 511-666 (1486)
40 PF15254 CCDC14: Coiled-coil d 91.8 1.9 4.1E-05 49.5 12.1 81 118-198 464-545 (861)
41 TIGR01843 type_I_hlyD type I s 91.8 14 0.00031 36.3 19.6 30 215-244 248-277 (423)
42 PF12128 DUF3584: Protein of u 91.5 35 0.00076 40.3 30.5 208 81-316 325-537 (1201)
43 KOG0612 Rho-associated, coiled 91.1 41 0.0009 40.9 22.1 33 266-299 671-703 (1317)
44 TIGR02680 conserved hypothetic 90.9 43 0.00094 40.3 28.1 94 30-140 738-831 (1353)
45 PRK10884 SH3 domain-containing 89.9 3.7 8E-05 39.9 10.7 74 96-182 87-160 (206)
46 KOG0996 Structural maintenance 89.8 56 0.0012 39.8 27.3 230 35-288 268-512 (1293)
47 PF11559 ADIP: Afadin- and alp 89.7 15 0.00032 33.0 14.8 111 159-286 36-150 (151)
48 TIGR01000 bacteriocin_acc bact 89.1 31 0.00068 36.0 18.6 35 215-249 293-327 (457)
49 PF10267 Tmemb_cc2: Predicted 88.8 37 0.0008 36.4 21.5 37 466-502 258-294 (395)
50 PF05557 MAD: Mitotic checkpoi 88.7 0.13 2.8E-06 56.3 0.0 99 101-200 170-268 (722)
51 KOG0995 Centromere-associated 88.7 47 0.001 37.5 20.9 161 103-280 267-436 (581)
52 KOG2077 JNK/SAPK-associated pr 88.3 11 0.00023 42.9 14.1 70 218-315 355-424 (832)
53 TIGR01843 type_I_hlyD type I s 87.7 30 0.00066 34.1 20.2 30 215-244 198-227 (423)
54 PF08317 Spc7: Spc7 kinetochor 87.3 34 0.00075 34.6 15.9 44 157-203 247-290 (325)
55 PF05852 DUF848: Gammaherpesvi 87.2 2 4.3E-05 40.5 6.7 52 156-207 56-107 (146)
56 KOG0250 DNA repair protein RAD 87.0 42 0.0009 40.2 18.2 185 15-211 715-924 (1074)
57 COG1579 Zn-ribbon protein, pos 86.9 26 0.00056 35.4 14.6 67 173-240 50-116 (239)
58 PF10174 Cast: RIM-binding pro 86.4 71 0.0015 37.0 27.1 220 9-240 23-300 (775)
59 PF05701 WEMBL: Weak chloropla 86.1 55 0.0012 35.5 20.2 83 95-177 274-360 (522)
60 PF12718 Tropomyosin_1: Tropom 86.0 28 0.0006 32.0 15.5 114 100-237 19-132 (143)
61 PF06785 UPF0242: Uncharacteri 86.0 15 0.00032 39.4 13.0 81 152-242 97-177 (401)
62 PF09789 DUF2353: Uncharacteri 85.6 51 0.0011 34.6 20.3 155 88-292 52-219 (319)
63 PF05667 DUF812: Protein of un 85.3 69 0.0015 35.9 20.3 88 160-250 446-535 (594)
64 PF12325 TMF_TATA_bd: TATA ele 83.5 35 0.00076 31.1 13.8 100 98-204 12-111 (120)
65 KOG1937 Uncharacterized conser 83.3 42 0.00092 37.2 15.2 123 155-286 301-427 (521)
66 COG5185 HEC1 Protein involved 83.0 57 0.0012 36.7 16.1 134 93-240 248-388 (622)
67 PF10146 zf-C4H2: Zinc finger- 82.7 6 0.00013 39.2 8.1 96 184-289 6-101 (230)
68 KOG0933 Structural maintenance 82.3 1.3E+02 0.0027 36.6 20.2 233 35-281 252-528 (1174)
69 PF06818 Fez1: Fez1; InterPro 82.3 10 0.00022 37.5 9.3 152 93-264 8-178 (202)
70 PF10211 Ax_dynein_light: Axon 81.4 21 0.00046 34.0 11.0 112 164-285 69-186 (189)
71 KOG0976 Rho/Rac1-interacting s 81.4 1.3E+02 0.0028 36.1 19.6 52 157-208 109-160 (1265)
72 PF13514 AAA_27: AAA domain 81.1 1.2E+02 0.0026 35.5 29.1 75 219-293 742-818 (1111)
73 PF05557 MAD: Mitotic checkpoi 80.2 2.6 5.6E-05 46.5 5.1 69 215-286 505-583 (722)
74 COG4942 Membrane-bound metallo 80.0 97 0.0021 33.8 23.8 190 34-247 45-251 (420)
75 KOG0999 Microtubule-associated 80.0 95 0.0021 35.6 16.7 59 200-261 89-147 (772)
76 PF10046 BLOC1_2: Biogenesis o 79.9 22 0.00048 30.6 9.6 68 167-234 13-80 (99)
77 PRK09039 hypothetical protein; 79.8 80 0.0017 32.7 16.0 59 165-230 124-182 (343)
78 KOG0804 Cytoplasmic Zn-finger 79.6 37 0.00081 37.5 13.2 111 99-232 336-447 (493)
79 PF05701 WEMBL: Weak chloropla 79.5 99 0.0021 33.6 31.2 118 52-174 66-192 (522)
80 PF15397 DUF4618: Domain of un 79.4 79 0.0017 32.4 17.7 159 32-207 61-232 (258)
81 PF10473 CENP-F_leu_zip: Leuci 79.0 57 0.0012 30.6 16.6 92 107-198 8-103 (140)
82 PF05911 DUF869: Plant protein 78.5 1.4E+02 0.003 34.8 20.1 124 141-283 67-204 (769)
83 PF04156 IncA: IncA protein; 78.2 55 0.0012 29.9 15.5 34 108-141 80-113 (191)
84 PHA03161 hypothetical protein; 77.6 7.8 0.00017 37.0 6.7 53 156-208 56-108 (150)
85 COG1579 Zn-ribbon protein, pos 77.6 85 0.0018 31.8 16.8 71 43-125 12-82 (239)
86 PF11559 ADIP: Afadin- and alp 77.1 55 0.0012 29.3 12.0 89 104-198 61-149 (151)
87 smart00338 BRLZ basic region l 76.6 23 0.00051 27.8 8.2 59 124-182 3-61 (65)
88 TIGR00998 8a0101 efflux pump m 76.5 78 0.0017 30.8 14.4 27 219-245 185-211 (334)
89 PF05266 DUF724: Protein of un 75.5 29 0.00064 33.5 10.1 64 173-246 108-171 (190)
90 KOG0977 Nuclear envelope prote 74.9 88 0.0019 35.2 14.7 171 35-233 43-217 (546)
91 PRK04778 septation ring format 74.9 1.3E+02 0.0029 32.7 21.0 194 39-242 254-470 (569)
92 KOG0933 Structural maintenance 74.7 1.1E+02 0.0025 37.0 16.0 117 107-240 739-856 (1174)
93 TIGR02680 conserved hypothetic 73.6 2.2E+02 0.0048 34.6 26.6 38 446-483 743-780 (1353)
94 PF13747 DUF4164: Domain of un 71.9 17 0.00038 31.2 6.9 58 191-248 10-67 (89)
95 PF07926 TPR_MLP1_2: TPR/MLP1/ 71.8 74 0.0016 28.4 14.4 70 201-287 47-116 (132)
96 PF10146 zf-C4H2: Zinc finger- 71.8 19 0.00041 35.7 8.1 77 36-124 13-89 (230)
97 PF09787 Golgin_A5: Golgin sub 70.5 1.6E+02 0.0035 31.8 21.3 170 103-285 110-297 (511)
98 TIGR01005 eps_transp_fam exopo 69.8 1.9E+02 0.004 32.2 18.3 52 82-133 217-268 (754)
99 KOG3850 Predicted membrane pro 69.7 1.8E+02 0.004 32.1 16.0 72 432-503 254-343 (455)
100 KOG0999 Microtubule-associated 68.5 1.9E+02 0.0042 33.3 15.5 127 59-202 605-731 (772)
101 PF05622 HOOK: HOOK protein; 67.7 1.7 3.7E-05 47.8 0.0 71 215-291 327-406 (713)
102 TIGR03185 DNA_S_dndD DNA sulfu 67.3 2E+02 0.0044 31.7 28.7 25 181-205 383-407 (650)
103 KOG2685 Cystoskeletal protein 66.9 52 0.0011 35.9 10.5 104 103-237 286-389 (421)
104 PF08232 Striatin: Striatin fa 66.1 24 0.00052 32.2 6.9 47 270-316 19-65 (134)
105 KOG0250 DNA repair protein RAD 66.1 3.1E+02 0.0068 33.4 22.3 204 103-312 229-451 (1074)
106 PF15294 Leu_zip: Leucine zipp 65.8 33 0.00071 35.5 8.5 84 28-114 126-209 (278)
107 PF13166 AAA_13: AAA domain 65.7 2.1E+02 0.0045 31.2 16.0 140 107-248 320-466 (712)
108 PF03148 Tektin: Tektin family 65.7 63 0.0014 33.7 10.7 97 103-220 259-355 (384)
109 PRK01156 chromosome segregatio 64.5 2.5E+02 0.0055 31.8 28.8 243 28-314 463-746 (895)
110 PF14662 CCDC155: Coiled-coil 64.2 82 0.0018 31.3 10.5 74 155-228 9-82 (193)
111 PF07058 Myosin_HC-like: Myosi 63.1 2.2E+02 0.0048 30.6 14.1 68 114-188 12-87 (351)
112 PF04880 NUDE_C: NUDE protein, 62.6 12 0.00025 36.0 4.4 53 215-303 2-54 (166)
113 PRK13729 conjugal transfer pil 62.6 25 0.00055 38.6 7.5 27 156-182 71-97 (475)
114 COG2825 HlpA Outer membrane pr 62.5 94 0.002 29.5 10.3 88 97-185 39-130 (170)
115 TIGR01005 eps_transp_fam exopo 62.1 2.6E+02 0.0056 31.1 22.5 57 34-90 194-265 (754)
116 PRK10884 SH3 domain-containing 61.7 1.4E+02 0.0031 29.2 11.7 59 154-212 118-181 (206)
117 PF07106 TBPIP: Tat binding pr 61.6 25 0.00054 32.1 6.2 43 89-132 60-102 (169)
118 PF15254 CCDC14: Coiled-coil d 61.3 3.5E+02 0.0075 32.3 20.8 87 107-193 381-487 (861)
119 KOG0239 Kinesin (KAR3 subfamil 61.1 2.3E+02 0.005 32.4 14.6 78 34-127 175-252 (670)
120 KOG0963 Transcription factor/C 61.0 3.1E+02 0.0067 31.7 26.9 137 186-323 289-444 (629)
121 PF09730 BicD: Microtubule-ass 60.8 1.3E+02 0.0029 34.7 12.8 46 264-309 386-431 (717)
122 COG2433 Uncharacterized conser 60.8 1.4E+02 0.0031 34.3 12.8 106 100-205 420-540 (652)
123 PF04111 APG6: Autophagy prote 60.6 32 0.00069 35.2 7.4 24 215-238 66-89 (314)
124 PF00769 ERM: Ezrin/radixin/mo 60.3 1.9E+02 0.004 28.8 15.0 42 159-200 3-44 (246)
125 PF08580 KAR9: Yeast cortical 60.3 49 0.0011 37.6 9.3 97 94-207 56-155 (683)
126 TIGR02977 phageshock_pspA phag 60.2 1.7E+02 0.0036 28.2 19.5 50 183-232 86-139 (219)
127 PF09730 BicD: Microtubule-ass 60.1 3.3E+02 0.0072 31.7 16.3 110 83-202 607-716 (717)
128 PF01486 K-box: K-box region; 59.7 1.1E+02 0.0023 26.0 9.3 77 106-182 16-96 (100)
129 PF05622 HOOK: HOOK protein; 59.5 3 6.6E-05 46.0 0.0 18 217-234 243-260 (713)
130 TIGR02231 conserved hypothetic 59.3 53 0.0012 35.0 9.0 49 261-316 123-171 (525)
131 PF05597 Phasin: Poly(hydroxya 59.1 1.4E+02 0.0031 27.7 10.5 84 122-205 35-125 (132)
132 PF05008 V-SNARE: Vesicle tran 59.0 92 0.002 24.9 8.5 78 5-126 1-78 (79)
133 PF09787 Golgin_A5: Golgin sub 59.0 2.4E+02 0.0051 30.6 13.8 53 182-237 151-204 (511)
134 PF09744 Jnk-SapK_ap_N: JNK_SA 58.7 1.2E+02 0.0026 28.8 10.3 79 97-183 28-111 (158)
135 PRK06569 F0F1 ATP synthase sub 57.3 1.8E+02 0.0039 27.8 14.1 60 153-215 91-151 (155)
136 PF13851 GAS: Growth-arrest sp 57.3 1.8E+02 0.0039 28.1 11.4 78 159-236 39-116 (201)
137 PF01576 Myosin_tail_1: Myosin 56.9 3.6 7.7E-05 46.9 0.0 189 103-315 33-226 (859)
138 PF14197 Cep57_CLD_2: Centroso 56.8 79 0.0017 26.4 7.8 65 100-174 3-67 (69)
139 PF14992 TMCO5: TMCO5 family 56.7 1.8E+02 0.004 30.3 11.9 33 208-240 146-180 (280)
140 PF05837 CENP-H: Centromere pr 56.5 1E+02 0.0022 27.1 8.8 49 154-202 3-51 (106)
141 PF15070 GOLGA2L5: Putative go 55.8 3.6E+02 0.0077 30.7 31.1 139 36-175 6-174 (617)
142 PRK10780 periplasmic chaperone 55.6 1.7E+02 0.0036 27.0 10.5 74 95-176 36-109 (165)
143 PF14197 Cep57_CLD_2: Centroso 55.0 64 0.0014 26.9 7.0 27 156-182 7-33 (69)
144 TIGR02231 conserved hypothetic 54.6 79 0.0017 33.7 9.4 33 100-132 69-101 (525)
145 PF04012 PspA_IM30: PspA/IM30 54.2 1.9E+02 0.0042 27.2 19.3 162 120-300 20-189 (221)
146 COG4717 Uncharacterized conser 54.0 4.8E+02 0.01 31.6 21.7 180 32-232 625-834 (984)
147 PF04849 HAP1_N: HAP1 N-termin 53.6 3E+02 0.0064 29.1 15.4 175 116-308 55-266 (306)
148 PF06632 XRCC4: DNA double-str 53.4 1.7E+02 0.0038 30.8 11.4 69 160-228 136-209 (342)
149 PRK09343 prefoldin subunit bet 53.2 1.7E+02 0.0037 26.2 12.6 87 111-197 16-107 (121)
150 PF04508 Pox_A_type_inc: Viral 52.9 15 0.00031 25.7 2.4 20 156-175 3-22 (23)
151 PF13863 DUF4200: Domain of un 52.3 1.5E+02 0.0033 25.4 14.5 100 113-219 11-111 (126)
152 COG1842 PspA Phage shock prote 52.1 2.6E+02 0.0055 27.9 18.5 125 117-243 18-150 (225)
153 PF15188 CCDC-167: Coiled-coil 50.9 32 0.00069 30.2 4.8 63 40-120 4-68 (85)
154 PF12777 MT: Microtubule-bindi 49.6 1E+02 0.0022 31.5 8.9 46 159-204 261-306 (344)
155 KOG4673 Transcription factor T 49.5 5.3E+02 0.011 30.8 16.5 162 43-227 476-651 (961)
156 KOG4809 Rab6 GTPase-interactin 49.1 4.8E+02 0.01 30.2 23.2 213 39-290 371-605 (654)
157 PF09789 DUF2353: Uncharacteri 48.8 3.6E+02 0.0077 28.6 17.6 162 133-316 5-180 (319)
158 KOG4674 Uncharacterized conser 48.6 7.2E+02 0.016 32.2 29.6 225 79-316 936-1200(1822)
159 PF11068 YlqD: YlqD protein; 48.3 31 0.00067 31.8 4.6 58 28-85 14-71 (131)
160 PF00170 bZIP_1: bZIP transcri 47.6 1.4E+02 0.003 23.5 7.6 53 128-180 7-59 (64)
161 PF05911 DUF869: Plant protein 47.1 5.4E+02 0.012 30.2 29.8 204 100-313 83-309 (769)
162 KOG0018 Structural maintenance 46.9 6.4E+02 0.014 31.1 24.9 99 38-140 157-258 (1141)
163 PF10186 Atg14: UV radiation r 46.6 2.6E+02 0.0057 26.5 15.6 45 163-207 58-102 (302)
164 KOG0995 Centromere-associated 46.6 5.1E+02 0.011 29.8 22.8 90 103-205 419-508 (581)
165 KOG0979 Structural maintenance 46.1 6.5E+02 0.014 30.9 17.2 30 342-371 941-973 (1072)
166 PF10458 Val_tRNA-synt_C: Valy 45.9 1.1E+02 0.0024 24.5 6.9 50 189-238 4-64 (66)
167 PRK10476 multidrug resistance 45.4 3.3E+02 0.0071 27.3 14.1 20 224-243 194-213 (346)
168 KOG0979 Structural maintenance 45.2 6.7E+02 0.014 30.8 21.5 65 59-128 238-302 (1072)
169 PF09755 DUF2046: Uncharacteri 44.9 4.1E+02 0.0089 28.2 21.3 53 218-287 227-279 (310)
170 KOG0978 E3 ubiquitin ligase in 44.7 5.8E+02 0.012 29.9 28.3 85 154-238 461-549 (698)
171 KOG0962 DNA repair protein RAD 44.5 7.4E+02 0.016 31.1 24.4 70 215-293 1010-1079(1294)
172 KOG4001 Axonemal dynein light 44.5 1.2E+02 0.0026 31.1 8.3 68 109-192 185-252 (259)
173 COG4372 Uncharacterized protei 44.4 5E+02 0.011 29.1 23.4 36 209-244 248-283 (499)
174 PF12329 TMF_DNA_bd: TATA elem 44.2 1.9E+02 0.0041 24.2 9.8 70 160-239 4-73 (74)
175 PF06810 Phage_GP20: Phage min 43.4 2.8E+02 0.006 26.0 10.0 31 162-192 52-82 (155)
176 COG3883 Uncharacterized protei 42.4 92 0.002 32.1 7.3 30 274-303 209-238 (265)
177 PF08614 ATG16: Autophagy prot 41.9 2.1E+02 0.0045 27.0 9.0 76 161-239 109-185 (194)
178 PF03194 LUC7: LUC7 N_terminus 41.6 1.4E+02 0.003 30.0 8.3 51 152-204 121-171 (254)
179 PF10234 Cluap1: Clusterin-ass 41.5 4.2E+02 0.0091 27.4 12.0 103 93-202 101-217 (267)
180 KOG4807 F-actin binding protei 41.5 5.6E+02 0.012 28.8 20.0 106 173-293 426-543 (593)
181 TIGR03794 NHPM_micro_HlyD NHPM 41.5 4.2E+02 0.0091 27.4 16.3 53 212-264 226-284 (421)
182 PF10018 Med4: Vitamin-D-recep 41.2 2.1E+02 0.0045 27.1 8.9 59 155-231 3-61 (188)
183 cd09234 V_HD-PTP_like Protein- 41.0 4.1E+02 0.0089 27.2 20.8 185 39-249 19-226 (337)
184 KOG4674 Uncharacterized conser 40.7 9.4E+02 0.02 31.2 23.6 172 55-244 136-315 (1822)
185 KOG0964 Structural maintenance 40.4 8E+02 0.017 30.3 18.9 109 111-222 406-516 (1200)
186 PF13166 AAA_13: AAA domain 40.3 5.3E+02 0.011 28.2 21.4 80 157-240 318-397 (712)
187 PF04065 Not3: Not1 N-terminal 40.3 4E+02 0.0086 27.0 11.2 27 151-177 119-145 (233)
188 PF11932 DUF3450: Protein of u 40.3 3.3E+02 0.0071 26.5 10.4 35 276-316 131-165 (251)
189 PF14662 CCDC155: Coiled-coil 40.3 4E+02 0.0086 26.7 18.9 141 98-245 4-149 (193)
190 PF08614 ATG16: Autophagy prot 39.9 2.7E+02 0.0059 26.2 9.5 26 96-121 61-86 (194)
191 COG0419 SbcC ATPase involved i 39.8 6.5E+02 0.014 29.1 26.9 25 261-285 568-595 (908)
192 PF12072 DUF3552: Domain of un 39.3 3.5E+02 0.0076 25.8 10.5 76 106-194 68-143 (201)
193 cd07657 F-BAR_Fes_Fer The F-BA 38.7 4E+02 0.0087 26.4 11.8 103 75-178 70-185 (237)
194 PF10234 Cluap1: Clusterin-ass 38.6 3.6E+02 0.0077 27.9 10.7 114 73-186 134-254 (267)
195 PF13600 DUF4140: N-terminal d 38.1 47 0.001 27.9 3.8 38 96-133 64-101 (104)
196 PF01166 TSC22: TSC-22/dip/bun 37.9 47 0.001 27.8 3.7 27 156-182 16-42 (59)
197 cd07675 F-BAR_FNBP1L The F-BAR 37.8 4.6E+02 0.0099 26.7 13.6 30 97-126 94-123 (252)
198 PF05130 FlgN: FlgN protein; 37.6 2.4E+02 0.0052 23.4 11.0 96 99-194 2-121 (143)
199 TIGR03007 pepcterm_ChnLen poly 37.2 5.1E+02 0.011 27.1 20.0 215 5-226 139-382 (498)
200 PLN02939 transferase, transfer 37.0 8.5E+02 0.018 29.6 19.4 141 166-309 224-395 (977)
201 PF06008 Laminin_I: Laminin Do 37.0 4.1E+02 0.0089 26.0 19.1 78 227-307 146-223 (264)
202 cd08325 CARD_CASP1-like Caspas 36.9 16 0.00034 30.7 0.8 44 431-474 14-60 (83)
203 cd07648 F-BAR_FCHO The F-BAR ( 36.2 4.1E+02 0.009 25.8 16.0 66 158-236 117-184 (261)
204 PRK04778 septation ring format 36.2 6.2E+02 0.013 27.8 28.0 152 89-242 159-339 (569)
205 PF07716 bZIP_2: Basic region 36.0 2E+02 0.0044 22.1 7.4 48 127-175 6-53 (54)
206 TIGR03185 DNA_S_dndD DNA sulfu 36.0 6.5E+02 0.014 27.9 28.0 36 37-72 205-240 (650)
207 PF09325 Vps5: Vps5 C terminal 35.9 3.6E+02 0.0078 25.0 18.3 52 6-63 2-53 (236)
208 PF09304 Cortex-I_coil: Cortex 35.7 3.6E+02 0.0078 24.9 12.5 64 99-172 13-76 (107)
209 PF08172 CASP_C: CASP C termin 35.1 63 0.0014 32.4 4.8 98 36-133 1-131 (248)
210 KOG3990 Uncharacterized conser 34.9 69 0.0015 33.5 5.1 54 117-191 226-279 (305)
211 PF13514 AAA_27: AAA domain 34.2 8.6E+02 0.019 28.8 33.0 185 109-305 743-976 (1111)
212 PF07111 HCR: Alpha helical co 34.0 8.6E+02 0.019 28.8 23.7 193 107-314 78-280 (739)
213 PF03915 AIP3: Actin interacti 33.9 4.2E+02 0.0091 29.0 10.9 78 187-275 218-295 (424)
214 KOG3990 Uncharacterized conser 33.8 2.2E+02 0.0047 30.1 8.4 37 438-474 225-261 (305)
215 PF07926 TPR_MLP1_2: TPR/MLP1/ 33.7 3.5E+02 0.0076 24.2 16.9 48 190-237 81-129 (132)
216 PF13815 Dzip-like_N: Iguana/D 33.6 2.8E+02 0.0061 24.5 8.1 62 137-198 55-117 (118)
217 TIGR02894 DNA_bind_RsfA transc 32.8 3.4E+02 0.0073 26.5 9.0 26 156-181 99-124 (161)
218 COG3883 Uncharacterized protei 32.7 5.9E+02 0.013 26.5 21.9 142 104-248 75-232 (265)
219 PF12718 Tropomyosin_1: Tropom 32.5 4.1E+02 0.0088 24.6 16.8 54 185-238 45-98 (143)
220 PF00901 Orbi_VP5: Orbivirus o 31.8 8.1E+02 0.018 27.8 16.1 174 11-215 58-240 (508)
221 PF04111 APG6: Autophagy prote 31.6 6E+02 0.013 26.2 11.7 44 215-258 101-149 (314)
222 PF13870 DUF4201: Domain of un 31.6 4.2E+02 0.0091 24.5 17.4 120 117-239 43-171 (177)
223 PF13851 GAS: Growth-arrest sp 31.6 4.9E+02 0.011 25.2 20.0 52 16-70 33-84 (201)
224 PF12777 MT: Microtubule-bindi 31.5 5.9E+02 0.013 26.2 11.9 60 215-281 251-310 (344)
225 PF10205 KLRAQ: Predicted coil 31.3 3.5E+02 0.0075 24.7 8.3 57 114-180 17-73 (102)
226 PRK09458 pspB phage shock prot 31.1 1E+02 0.0022 26.7 4.7 36 271-317 34-69 (75)
227 COG0419 SbcC ATPase involved i 31.1 8.8E+02 0.019 28.0 27.8 18 115-132 500-517 (908)
228 PF05700 BCAS2: Breast carcino 30.8 2.8E+02 0.006 27.0 8.2 110 5-123 106-217 (221)
229 KOG4484 Uncharacterized conser 30.7 3.5E+02 0.0076 27.2 8.8 78 120-211 28-108 (199)
230 KOG0978 E3 ubiquitin ligase in 30.3 9.6E+02 0.021 28.2 23.1 74 214-318 462-538 (698)
231 PF05266 DUF724: Protein of un 30.2 5.2E+02 0.011 25.1 12.4 46 161-206 131-176 (190)
232 PF05103 DivIVA: DivIVA protei 30.2 36 0.00077 29.2 1.9 42 135-176 80-122 (131)
233 KOG0994 Extracellular matrix g 30.2 1.3E+03 0.027 29.6 24.9 121 108-228 1503-1634(1758)
234 KOG3501 Molecular chaperone Pr 30.1 4.6E+02 0.01 24.5 9.5 94 34-133 3-98 (114)
235 smart00787 Spc7 Spc7 kinetocho 30.1 6.5E+02 0.014 26.2 16.0 24 49-72 138-161 (312)
236 PF15397 DUF4618: Domain of un 29.5 6.5E+02 0.014 26.0 17.5 105 152-284 118-222 (258)
237 PF13935 Ead_Ea22: Ead/Ea22-li 29.4 2.8E+02 0.0062 25.2 7.6 39 165-208 71-109 (139)
238 PF02731 SKIP_SNW: SKIP/SNW do 29.2 1.3E+02 0.0029 29.0 5.6 60 252-311 75-140 (158)
239 COG1730 GIM5 Predicted prefold 29.1 5.1E+02 0.011 24.6 11.0 34 211-244 92-125 (145)
240 PF06548 Kinesin-related: Kine 29.1 5.5E+02 0.012 28.9 10.9 85 103-200 386-484 (488)
241 KOG2220 Predicted signal trans 29.0 4.7E+02 0.01 30.3 10.7 128 140-270 452-604 (714)
242 TIGR03752 conj_TIGR03752 integ 28.7 2.4E+02 0.0053 31.4 8.2 65 103-176 60-124 (472)
243 KOG4603 TBP-1 interacting prot 28.5 6.3E+02 0.014 25.5 12.6 101 108-236 78-178 (201)
244 PF07820 TraC: TraC-like prote 28.4 2.2E+02 0.0047 25.7 6.4 49 113-172 6-54 (92)
245 PF04012 PspA_IM30: PspA/IM30 28.0 5.2E+02 0.011 24.4 13.3 49 101-149 29-77 (221)
246 KOG0982 Centrosomal protein Nu 28.0 7.6E+02 0.016 27.9 11.6 80 153-236 259-341 (502)
247 PF14389 Lzipper-MIP1: Leucine 28.0 2.5E+02 0.0054 24.1 6.6 25 159-183 13-37 (88)
248 PF06698 DUF1192: Protein of u 27.9 90 0.0019 25.8 3.7 34 100-133 26-59 (59)
249 KOG0971 Microtubule-associated 27.7 1.2E+03 0.027 28.7 15.9 104 104-207 398-515 (1243)
250 PF14916 CCDC92: Coiled-coil d 27.7 1.2E+02 0.0025 25.4 4.3 39 159-201 1-40 (60)
251 PRK10929 putative mechanosensi 27.6 1.2E+03 0.026 28.6 26.0 283 30-322 98-440 (1109)
252 PF09763 Sec3_C: Exocyst compl 27.4 3.4E+02 0.0074 30.3 9.2 105 99-224 48-162 (701)
253 TIGR02971 heterocyst_DevB ABC 27.2 6.1E+02 0.013 24.9 15.5 30 215-244 181-210 (327)
254 PRK00888 ftsB cell division pr 27.2 79 0.0017 27.9 3.6 30 157-186 44-73 (105)
255 PRK10698 phage shock protein P 27.2 6.1E+02 0.013 24.9 17.8 29 102-130 99-127 (222)
256 COG4026 Uncharacterized protei 27.2 3.7E+02 0.0079 28.2 8.6 101 67-206 108-208 (290)
257 PF01576 Myosin_tail_1: Myosin 27.0 21 0.00045 41.0 0.0 140 103-244 603-774 (859)
258 KOG0980 Actin-binding protein 26.7 1.2E+03 0.027 28.4 23.3 201 73-311 343-544 (980)
259 PF08317 Spc7: Spc7 kinetochor 26.7 7E+02 0.015 25.5 20.7 95 35-129 76-176 (325)
260 PRK11281 hypothetical protein; 26.4 1.3E+03 0.028 28.4 15.4 158 151-313 57-236 (1113)
261 PF03962 Mnd1: Mnd1 family; I 26.4 5.9E+02 0.013 24.5 9.8 86 147-245 62-153 (188)
262 PF03234 CDC37_N: Cdc37 N term 25.8 6.3E+02 0.014 24.6 10.0 24 89-112 98-121 (177)
263 PRK15136 multidrug efflux syst 25.8 7.7E+02 0.017 25.6 12.8 32 231-262 208-244 (390)
264 KOG3119 Basic region leucine z 25.7 3.4E+02 0.0073 27.5 8.0 63 121-183 189-251 (269)
265 KOG0804 Cytoplasmic Zn-finger 25.7 1E+03 0.022 27.0 12.3 94 63-174 362-455 (493)
266 PRK13848 conjugal transfer pro 25.3 97 0.0021 28.2 3.8 30 114-152 8-37 (98)
267 KOG1962 B-cell receptor-associ 25.0 2.2E+02 0.0049 28.7 6.6 69 2-78 113-187 (216)
268 PRK09413 IS2 repressor TnpA; R 24.6 1.4E+02 0.003 26.2 4.5 29 156-184 73-101 (121)
269 PLN02939 transferase, transfer 24.4 1.4E+03 0.029 28.0 20.0 108 160-285 323-444 (977)
270 PF13870 DUF4201: Domain of un 24.2 5.7E+02 0.012 23.6 19.6 163 108-291 5-174 (177)
271 PF10191 COG7: Golgi complex c 24.1 1.2E+03 0.025 27.1 14.2 32 90-121 22-53 (766)
272 PF12795 MscS_porin: Mechanose 24.0 6.7E+02 0.014 24.3 16.9 89 215-308 101-189 (240)
273 TIGR00293 prefoldin, archaeal 24.0 4.8E+02 0.01 22.6 8.8 96 37-143 2-120 (126)
274 PF12240 Angiomotin_C: Angiomo 24.0 7.7E+02 0.017 25.0 10.2 101 34-142 57-162 (205)
275 KOG2129 Uncharacterized conser 23.9 1.1E+03 0.024 26.8 26.6 213 37-294 46-278 (552)
276 PF06305 DUF1049: Protein of u 23.9 76 0.0016 24.6 2.6 22 483-504 47-68 (68)
277 PF08647 BRE1: BRE1 E3 ubiquit 23.6 4.8E+02 0.01 22.5 10.0 37 160-196 44-80 (96)
278 PRK09841 cryptic autophosphory 23.5 1.1E+03 0.024 26.7 13.6 28 286-313 373-400 (726)
279 PF10186 Atg14: UV radiation r 23.5 6.4E+02 0.014 23.9 14.5 41 436-477 255-297 (302)
280 PF06008 Laminin_I: Laminin Do 23.2 7.2E+02 0.016 24.4 19.8 21 35-55 53-73 (264)
281 PF15112 DUF4559: Domain of un 22.7 2.7E+02 0.0058 29.6 6.9 98 213-315 163-268 (307)
282 PRK10246 exonuclease subunit S 22.6 1.3E+03 0.029 27.3 24.9 204 36-244 618-884 (1047)
283 PF07106 TBPIP: Tat binding pr 22.5 6E+02 0.013 23.3 8.5 28 110-137 73-100 (169)
284 PRK14472 F0F1 ATP synthase sub 22.5 2.5E+02 0.0054 25.9 6.0 43 263-311 42-84 (175)
285 TIGR03495 phage_LysB phage lys 22.2 4.1E+02 0.0088 25.0 7.3 51 2-55 4-54 (135)
286 KOG0244 Kinesin-like protein [ 22.2 3.9E+02 0.0084 32.2 8.6 202 100-310 335-554 (913)
287 KOG4368 Predicted RNA binding 22.1 3.1E+02 0.0068 31.8 7.7 32 357-388 633-664 (757)
288 PF08581 Tup_N: Tup N-terminal 21.4 1.9E+02 0.0041 24.9 4.6 58 440-504 13-70 (79)
289 PRK14475 F0F1 ATP synthase sub 21.4 2.7E+02 0.0058 25.7 6.0 42 263-310 34-75 (167)
290 TIGR01010 BexC_CtrB_KpsE polys 21.4 8.6E+02 0.019 24.6 13.6 26 156-181 179-204 (362)
291 TIGR01000 bacteriocin_acc bact 21.4 9.8E+02 0.021 25.3 20.5 28 106-133 169-196 (457)
292 PF04859 DUF641: Plant protein 21.1 5.9E+02 0.013 23.9 8.1 41 107-147 78-118 (131)
293 PRK00295 hypothetical protein; 20.9 4.2E+02 0.0092 21.9 6.4 29 40-68 4-32 (68)
294 PRK02119 hypothetical protein; 20.9 4E+02 0.0087 22.3 6.4 32 37-68 5-36 (73)
295 COG3206 GumC Uncharacterized p 20.8 1E+03 0.022 25.1 13.3 22 148-169 381-402 (458)
296 COG0233 Frr Ribosome recycling 20.5 1.4E+02 0.003 29.6 4.1 45 88-141 141-186 (187)
297 PF05377 FlaC_arch: Flagella a 20.5 3.5E+02 0.0075 22.4 5.7 39 156-201 2-40 (55)
298 PRK10807 paraquat-inducible pr 20.4 6.2E+02 0.013 28.1 9.4 30 100-129 434-463 (547)
299 KOG2150 CCR4-NOT transcription 20.3 1.4E+03 0.029 26.5 12.2 48 106-157 42-94 (575)
300 PF10828 DUF2570: Protein of u 20.3 5.9E+02 0.013 22.3 8.9 62 111-175 20-81 (110)
301 PRK14471 F0F1 ATP synthase sub 20.3 3.1E+02 0.0067 25.0 6.1 42 263-310 32-73 (164)
302 PF05384 DegS: Sensor protein 20.3 7.7E+02 0.017 23.6 12.5 111 126-245 6-123 (159)
303 PF10212 TTKRSYEDQ: Predicted 20.3 9.7E+02 0.021 27.3 10.8 89 136-240 419-507 (518)
304 PHA03253 UL35; Provisional 20.1 3.2E+02 0.007 31.3 7.2 50 274-332 429-478 (609)
305 PF05700 BCAS2: Breast carcino 20.1 8.1E+02 0.018 23.8 10.4 62 46-122 102-163 (221)
306 PRK11448 hsdR type I restricti 20.0 5.7E+02 0.012 31.0 9.6 15 231-245 239-253 (1123)
No 1
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=100.00 E-value=5.4e-156 Score=1146.78 Aligned_cols=341 Identities=80% Similarity=1.071 Sum_probs=324.0
Q ss_pred hhHHhhhhhHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHHHhhhHHH
Q 009074 155 MVDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEAVLAGGAAANAVRDYQRKVQEMNEERKTLDR 234 (544)
Q Consensus 155 ~V~dlQN~N~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLtqTv~ELEEAvLaggaaaNAvrdyqrq~~elneEkrtLer 234 (544)
|||||||+||||||||||||||||||||||||||+|||||||||+||||||||||||||||||||||++|||||++||||
T Consensus 1 iVdd~QN~N~EL~kQiEIcqEENkiLdK~hRQKV~EVEKLsqTi~ELEEaiLagGaaaNavrdYqrq~~elneEkrtLeR 80 (351)
T PF07058_consen 1 IVDDVQNQNQELMKQIEICQEENKILDKMHRQKVLEVEKLSQTIRELEEAILAGGAAANAVRDYQRQVQELNEEKRTLER 80 (351)
T ss_pred CchhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhhhhhhhhhhhccccCCCCccchhhHHHHhhhhHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHHHHHHhhc
Q 009074 235 ELARAKVTANRVATVVANEWKDANDKVMPVKQWLEERRFLQGEMQQLRDRLAITERTAKSEAQLKEKYHLRLKVLEESLR 314 (544)
Q Consensus 235 ELARaKv~AnRVA~vVAnEWKDendkVmPVKqWLEErR~LQGEmqrLrdKLAiaERtAkaEaQLKeK~~lRLk~LEe~lk 314 (544)
|||||||+||||||||||||||+||||||||||||||||||||||||||||||||||||+|||||||||+||||||||||
T Consensus 81 ELARaKV~aNRVA~vvANEWKD~nDkvMPVKqWLEERR~lQgEmQ~LrDKLAiaERtAkaEaQLkeK~klRLK~LEe~Lk 160 (351)
T PF07058_consen 81 ELARAKVSANRVATVVANEWKDENDKVMPVKQWLEERRFLQGEMQQLRDKLAIAERTAKAEAQLKEKLKLRLKVLEEGLK 160 (351)
T ss_pred HHHHhhhhhhhhhhhhcccccccCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCccCCCCcccccCCCccccccccccccccCCCCCCCcc-----hhhhhhhccCCccccCCCCcccc
Q 009074 315 GSSNGSGRSTSDGRSISNGSSRRQSLGGADNISKLTSNGFISKRTPSSRSLS-----SSTVLKHAKGTSKSFDGGTRSLD 389 (544)
Q Consensus 315 ~~~s~~~~~~~~~~~~s~gp~rr~s~gg~~~~~~~~sng~~~kr~~~sq~r~-----s~~~l~~a~~~s~sfdgg~rs~~ 389 (544)
+++|+++++++++++.++||+||+++||+++++++++||++.+|+|+||||+ ++++|+|++++|+|||||++++|
T Consensus 161 ~~~s~~~~~~~~~~s~~~gps~r~~lgg~~~~~~~~sng~~~kr~~~sq~r~s~~~~~~~~lk~~~~~s~sfdgg~rsld 240 (351)
T PF07058_consen 161 GSSSNSSRPTSEGKSPSNGPSRRQSLGGAENFSKLSSNGGLSKRRPSSQPRSSLSGSSSPVLKHAKGTSKSFDGGSRSLD 240 (351)
T ss_pred CCCCCCCCCCcCCCCCCCCCccCcCCCCccccccccCCCccccCCCcccccccccccchhhhcccccCccccccCCCcch
Confidence 9999999999999999999999999999999999999999999999999996 45689999999999999999999
Q ss_pred ccccccCCC----CC-CccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhhhhcccccccCh
Q 009074 390 RSKVLLNGS----PN-QSIDATKDSDTPNTWKGNLEDKPSEFQSTDTEDSVPGVLYDLLQKEVVALRKAGHEKDQSLKDK 464 (544)
Q Consensus 390 ~~k~~~~~~----~~-~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~D~Vsg~LYD~LQKEVi~LRKac~eKdqsLkdK 464 (544)
++++..||. ++ .+++.+..++..+++ +.++++.++++++|+||||||||||||||+||||||+|||||+||
T Consensus 241 ~~k~~~ng~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~D~VsG~LYD~LQKEVi~LRKac~eKdqsLkdK 316 (351)
T PF07058_consen 241 RSKVLANGPENHPVNSKSTDASKEAEKENSE----EKPNSEKPNSESEDSVSGFLYDMLQKEVINLRKACHEKDQSLKDK 316 (351)
T ss_pred hhhhhhcCccccccccchhhhhhhccccCcc----cccccCCCCCCcCCcchHHHHHHHHHHHHHHHHHHhhhccchhhh
Confidence 999999993 22 455555555544333 234456778899999999999999999999999999999999999
Q ss_pred hHHHHHHHHhHhhhhhHHHHHHHHHhHHHHHhHHH
Q 009074 465 DDAIEILAKKVDTLTKAMEVEAKKMRREVAAMEKE 499 (544)
Q Consensus 465 ddaIeML~KKVdtLtKAmEVEaKKmrREvaa~EKE 499 (544)
||||+||+|||||||||||||||||||||||||||
T Consensus 317 DdaIeMLaKKVdtLtKAmEVEaKKmrREvAamEKE 351 (351)
T PF07058_consen 317 DDAIEMLAKKVDTLTKAMEVEAKKMRREVAAMEKE 351 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 99999999999999999999999999999999997
No 2
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.50 E-value=0.24 Score=54.36 Aligned_cols=34 Identities=12% Similarity=0.285 Sum_probs=16.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhh
Q 009074 36 FPKLTEELSKVEEKLKLAENLIETKNLEIKKIND 69 (544)
Q Consensus 36 veEl~~El~K~dEKLk~tE~lle~kNLEiKklnd 69 (544)
+.++..++..+...+..++..+....-++..+..
T Consensus 676 l~~l~~~l~~l~~~l~~l~~~~~~~~~~l~~l~~ 709 (1164)
T TIGR02169 676 LQRLRERLEGLKRELSSLQSELRRIENRLDELSQ 709 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555444444444444433
No 3
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.37 E-value=0.35 Score=53.19 Aligned_cols=106 Identities=22% Similarity=0.321 Sum_probs=44.3
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHhHHHHHHH-HHHHHHHhhhccCCCCChhHHhhhccHHHHHHHHH
Q 009074 38 KLTEELSKVEEKLKLAENLIETKNLEIKKINDEKRASMAAQFAA-EATLRRVHAAQKDDDMPPIEAILAPLEAELKLARQ 116 (544)
Q Consensus 38 El~~El~K~dEKLk~tE~lle~kNLEiKklndEKK~alAAQfAA-EAtLRRvha~QKdddmppieaiiApLeaelk~~r~ 116 (544)
+..+.|..+...+.-++..++...-.++++...+. ++.+|-. +..+............-.+..-+..++.++.....
T Consensus 174 ~~~~~l~~~~~~l~el~~~~~~L~~q~~~l~~~~e--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 251 (1164)
T TIGR02169 174 KALEELEEVEENIERLDLIIDEKRQQLERLRRERE--KAERYQALLKEKREYEGYELLKEKEALERQKEAIERQLASLEE 251 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555554445555544443 1111211 11111111111111222333344455555555555
Q ss_pred HHHHhhhchHHHHHHhhhHHHHHHHHHHH
Q 009074 117 EIAKLQDDNKALDRLTKSKEAALLEAERT 145 (544)
Q Consensus 117 Ei~kLqddnkaLerltksKEaALleAeR~ 145 (544)
++..+++....++.-....+..+.+.+..
T Consensus 252 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 280 (1164)
T TIGR02169 252 ELEKLTEEISELEKRLEEIEQLLEELNKK 280 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555554444444444444433
No 4
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=97.34 E-value=0.36 Score=52.66 Aligned_cols=38 Identities=18% Similarity=0.256 Sum_probs=24.1
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHH
Q 009074 34 PVFPKLTEELSKVEEKLKLAENLIETKNLEIKKINDEK 71 (544)
Q Consensus 34 KaveEl~~El~K~dEKLk~tE~lle~kNLEiKklndEK 71 (544)
..+.++..++..+...+..++..+.....+++.+..+.
T Consensus 670 ~~~~~l~~e~~~l~~~~~~l~~~l~~~~~~~~~~~~~l 707 (1179)
T TIGR02168 670 SSILERRREIEELEEKIEELEEKIAELEKALAELRKEL 707 (1179)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777777777766666555555555443
No 5
>PRK02224 chromosome segregation protein; Provisional
Probab=97.27 E-value=0.43 Score=52.36 Aligned_cols=29 Identities=21% Similarity=0.272 Sum_probs=19.9
Q ss_pred hhhHHHHHHHHHHHHHhhhHHHHHhhhhh
Q 009074 213 NAVRDYQRKVQEMNEERKTLDRELARAKV 241 (544)
Q Consensus 213 NAvrdyqrq~~elneEkrtLerELARaKv 241 (544)
..+.+|...+.++.+++..|..++...+.
T Consensus 405 ~~~~~~e~~l~~l~~~~~~l~~~~~~~~~ 433 (880)
T PRK02224 405 VDLGNAEDFLEELREERDELREREAELEA 433 (880)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35778888877777777777766655443
No 6
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.12 E-value=0.4 Score=52.59 Aligned_cols=95 Identities=25% Similarity=0.302 Sum_probs=63.3
Q ss_pred hhccHHHHHHHHHHHHHhhhchHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHhHHHHHH
Q 009074 104 LAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKILDKM 183 (544)
Q Consensus 104 iApLeaelk~~r~Ei~kLqddnkaLerltksKEaALleAeR~v~~AlakA~~V~dlQN~N~EL~kQiEIcqEEnkiLdk~ 183 (544)
...|..+....+..|..|.+|+..|..-.+.+|..+..... +..+++....+|+.++..|..+.+=....
T Consensus 208 ~~~L~~q~~e~~~ri~~LEedi~~l~qk~~E~e~~~~~lk~----------~~~elEq~~~eLk~rLk~~~~~~~~~~~~ 277 (546)
T PF07888_consen 208 RESLKEQLAEARQRIRELEEDIKTLTQKEKEQEKELDKLKE----------LKAELEQLEAELKQRLKETVVQLKQEETQ 277 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 34556666666777777777777766555544444443321 23466677777778887777776644444
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhc
Q 009074 184 HRQKVAEVEKLTQTVRELEEAVLAG 208 (544)
Q Consensus 184 hRQKvaEVEKLtqTv~ELEEAvLag 208 (544)
..+...|.+.|...++-+++-+.++
T Consensus 278 ~~~~~~e~e~LkeqLr~~qe~lqaS 302 (546)
T PF07888_consen 278 AQQLQQENEALKEQLRSAQEQLQAS 302 (546)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567788889998899888888776
No 7
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.96 E-value=1.1 Score=52.32 Aligned_cols=151 Identities=14% Similarity=0.101 Sum_probs=91.6
Q ss_pred cCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHhH------------HHH-HHHHHHHHHHhhhcc----C
Q 009074 32 NLPVFPKLTEELSKVEEKLKLAENLIETKNLEIKKINDEKRASM------------AAQ-FAAEATLRRVHAAQK----D 94 (544)
Q Consensus 32 KdKaveEl~~El~K~dEKLk~tE~lle~kNLEiKklndEKK~al------------AAQ-fAAEAtLRRvha~QK----d 94 (544)
..+-+.++.+++..+...+...+..|+.....+.++..+...+- ..+ -..+..|..+-+.+. +
T Consensus 742 ~~~eip~l~~~l~~le~~l~~~~~~le~~~~~l~~~~~~~~~~esL~~~v~~i~r~~~ei~~l~~qie~l~~~l~~~~~~ 821 (1311)
T TIGR00606 742 KEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLD 821 (1311)
T ss_pred HHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 34667778888888888888888888877777777777775441 111 111223333222222 2
Q ss_pred CCCChhHHhhhccHHHHHHHHHHHHHhhhchHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHH
Q 009074 95 DDMPPIEAILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQ 174 (544)
Q Consensus 95 ddmppieaiiApLeaelk~~r~Ei~kLqddnkaLerltksKEaALleAeR~v~~AlakA~~V~dlQN~N~EL~kQiEIcq 174 (544)
..+--|+.-|..++.++...+.++..++.....+.+-+..=...+.+....--..-..-....+++.+..+|..+++.|.
T Consensus 822 ~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~~l~~r~~le~~L~el~~el~~l~ 901 (1311)
T TIGR00606 822 RTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLI 901 (1311)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23344777888888888888888888888777776655554333443332221111122255777777777777777777
Q ss_pred HHhHHHHH
Q 009074 175 EENKILDK 182 (544)
Q Consensus 175 EEnkiLdk 182 (544)
++.+-++.
T Consensus 902 ~~~~~~~~ 909 (1311)
T TIGR00606 902 REIKDAKE 909 (1311)
T ss_pred HHHHHHHH
Confidence 76655543
No 8
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.83 E-value=0.4 Score=53.60 Aligned_cols=184 Identities=24% Similarity=0.339 Sum_probs=116.1
Q ss_pred HHhhhccHHHHHHHHHHHHHhhhchHHHHHHhhhHHHHHHHHHHHHHHHHHHhh-hhHHhhhhhHHHHHHHHHHHHHhHH
Q 009074 101 EAILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKAS-MVDDLQNKNQELMKQIEICQEENKI 179 (544)
Q Consensus 101 eaiiApLeaelk~~r~Ei~kLqddnkaLerltksKEaALleAeR~v~~AlakA~-~V~dlQN~N~EL~kQiEIcqEEnki 179 (544)
...+.-||+|||.+|.|+... |..|.=++++-.-|...||.+++.|.-.- -.|+|||++++|.++.+--..--..
T Consensus 417 ~~a~~rLE~dvkkLraeLq~~----Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~ 492 (697)
T PF09726_consen 417 PDAISRLEADVKKLRAELQSS----RQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQ 492 (697)
T ss_pred hHHHHHHHHHHHHHHHHHHhh----hhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345668999999999998764 67788888888888888999998886544 4699999999999887655544444
Q ss_pred HHHH---hhhHHHHHHHHHHHHHH--HHHHHHhc--hhhhhhhH----H-HHHHHHHHHHHhhhHHHHHhhhhhhhhhhh
Q 009074 180 LDKM---HRQKVAEVEKLTQTVRE--LEEAVLAG--GAAANAVR----D-YQRKVQEMNEERKTLDRELARAKVTANRVA 247 (544)
Q Consensus 180 Ldk~---hRQKvaEVEKLtqTv~E--LEEAvLag--gaaaNAvr----d-yqrq~~elneEkrtLerELARaKv~AnRVA 247 (544)
|+|= .|-.-+++|+-=+.-+. .+|..-|. .|.+.+-| + .+.+.++|+.|.+.|.+|| |..=.++.
T Consensus 493 LEkrL~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~~r~r~~~lE~E~~~lr~el---k~kee~~~ 569 (697)
T PF09726_consen 493 LEKRLAEERRQRASLEKQLQEERKARKEEEEKAARALAQAQATRQECAESCRQRRRQLESELKKLRREL---KQKEEQIR 569 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccchhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 4432 11222334443222221 22221121 22222211 1 3567799999999999999 44444433
Q ss_pred hhhhhccccCCCCccchhhH-H---HHhhhhHHHHHHHHHHHHHhHHhhhHHHHHH
Q 009074 248 TVVANEWKDANDKVMPVKQW-L---EERRFLQGEMQQLRDRLAITERTAKSEAQLK 299 (544)
Q Consensus 248 ~vVAnEWKDendkVmPVKqW-L---EErR~LQGEmqrLrdKLAiaERtAkaEaQLK 299 (544)
... .+.- -.... . .+--.|-...+-++||=++.|.+..+|--+|
T Consensus 570 ~~e-----~~~~---~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEtriK 617 (697)
T PF09726_consen 570 ELE-----SELQ---ELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLSAETRIK 617 (697)
T ss_pred HHH-----HHHH---HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 322 2200 00011 1 1344567777889999999999999998887
No 9
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=96.69 E-value=1.3 Score=48.39 Aligned_cols=32 Identities=13% Similarity=0.166 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHH
Q 009074 41 EELSKVEEKLKLAENLIETKNLEIKKINDEKR 72 (544)
Q Consensus 41 ~El~K~dEKLk~tE~lle~kNLEiKklndEKK 72 (544)
.++..+..++..++..++..+-++..+..+..
T Consensus 670 ~~~~~l~~e~~~l~~~~~~l~~~l~~~~~~~~ 701 (1179)
T TIGR02168 670 SSILERRREIEELEEKIEELEEKIAELEKALA 701 (1179)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566666666666655555555554444
No 10
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=96.57 E-value=0.1 Score=49.86 Aligned_cols=130 Identities=24% Similarity=0.339 Sum_probs=96.9
Q ss_pred HHhhhhHHhhhhhHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhc-hhhhhh---hHHHHHHHHHHH
Q 009074 151 AKASMVDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEAVLAG-GAAANA---VRDYQRKVQEMN 226 (544)
Q Consensus 151 akA~~V~dlQN~N~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLtqTv~ELEEAvLag-gaaaNA---vrdyqrq~~eln 226 (544)
|+..-+.+|+|.+.||...|+.|..||++|..+++.-...+.|+.-+=.+|-..|-.- --.-+- +|.|+.+..++.
T Consensus 9 ar~~ki~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~ 88 (194)
T PF15619_consen 9 ARLHKIKELQNELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELE 88 (194)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667788999999999999999999999999999999999999888888887776442 111111 566667777777
Q ss_pred HHhhhHHHHHhhhhhhhhhhhhhhhhccccCCCCccchhhHHHHhhhhHHHHHHHHHHHHHhHHhhh
Q 009074 227 EERKTLDRELARAKVTANRVATVVANEWKDANDKVMPVKQWLEERRFLQGEMQQLRDRLAITERTAK 293 (544)
Q Consensus 227 eEkrtLerELARaKv~AnRVA~vVAnEWKDendkVmPVKqWLEErR~LQGEmqrLrdKLAiaERtAk 293 (544)
...+..+.||-+++-...+.=--+ =...|.||--|+.+...+..++..+++...
T Consensus 89 ~klk~~~~el~k~~~~l~~L~~L~-------------~dknL~eReeL~~kL~~~~~~l~~~~~ki~ 142 (194)
T PF15619_consen 89 RKLKDKDEELLKTKDELKHLKKLS-------------EDKNLAEREELQRKLSQLEQKLQEKEKKIQ 142 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------------HcCCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777665555422111 124677888899999999988888876543
No 11
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=96.41 E-value=1.1 Score=55.32 Aligned_cols=193 Identities=24% Similarity=0.281 Sum_probs=105.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHhHHHHHHHHHH--HHHHh--hhccCCCCChhHHhhhccHHHH
Q 009074 36 FPKLTEELSKVEEKLKLAENLIETKNLEIKKINDEKRASMAAQFAAEAT--LRRVH--AAQKDDDMPPIEAILAPLEAEL 111 (544)
Q Consensus 36 veEl~~El~K~dEKLk~tE~lle~kNLEiKklndEKK~alAAQfAAEAt--LRRvh--a~QKdddmppieaiiApLeael 111 (544)
.+++.++-+++-+++...+..++-.|+-...+..-|... -|.+.-++ ++|+. ++.-+.-.--|+.+++
T Consensus 1374 ~eelee~kk~l~~~lq~~qe~~e~~~~~~~~Lek~k~~l--~~el~d~~~d~~~~~~~~~~le~k~k~f~k~l~------ 1445 (1930)
T KOG0161|consen 1374 LEELEELKKKLQQRLQELEEQIEAANAKNASLEKAKNRL--QQELEDLQLDLERSRAAVAALEKKQKRFEKLLA------ 1445 (1930)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 466777777777788888888777776666664444321 11111111 11111 1111111122333333
Q ss_pred HHHHHHHHHhhhchHHHHHHhhhHHHHHHHHHHHHHHHHHHh----hhhHHhhhhhHHHHHHHHHHHHHhHHHHHHhhhH
Q 009074 112 KLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKA----SMVDDLQNKNQELMKQIEICQEENKILDKMHRQK 187 (544)
Q Consensus 112 k~~r~Ei~kLqddnkaLerltksKEaALleAeR~v~~AlakA----~~V~dlQN~N~EL~kQiEIcqEEnkiLdk~hRQK 187 (544)
..++....|+....+-.+=.+..+..++...+.++.+.+-. .-..-+++...+|..|+....--.--|++..|..
T Consensus 1446 -e~k~~~e~l~~Eld~aq~e~r~~~tel~kl~~~lee~~e~~e~l~renk~l~~ei~dl~~~~~e~~k~v~elek~~r~l 1524 (1930)
T KOG0161|consen 1446 -EWKKKLEKLQAELDAAQRELRQLSTELQKLKNALEELLEQLEELRRENKNLSQEIEDLEEQKDEGGKRVHELEKEKRRL 1524 (1930)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555666666666666666666611 1113344455555555555544555678889999
Q ss_pred HHHHHHHHHHHHHHHHHHHhchhhh-------hh-----hHHHHHHHHHHHHHhhhHHHHHh
Q 009074 188 VAEVEKLTQTVRELEEAVLAGGAAA-------NA-----VRDYQRKVQEMNEERKTLDRELA 237 (544)
Q Consensus 188 vaEVEKLtqTv~ELEEAvLaggaaa-------NA-----vrdyqrq~~elneEkrtLerELA 237 (544)
..|++-|++++.|+|.+..+.=.+. ++ +|+-+.+..+...-++-+-+.+.
T Consensus 1525 e~e~~elQ~aLeElE~~le~eE~~~lr~~~~~~~~r~e~er~l~ek~Ee~E~~rk~~~~~i~ 1586 (1930)
T KOG0161|consen 1525 EQEKEELQAALEELEAALEAEEDKKLRLQLELQQLRSEIERRLQEKDEEIEELRKNLQRQLE 1586 (1930)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 9999999999999999876652221 22 44455555555554554444443
No 12
>PHA02562 46 endonuclease subunit; Provisional
Probab=96.40 E-value=0.66 Score=47.95 Aligned_cols=74 Identities=15% Similarity=0.206 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHhh---hHHHHHHHHHHHHHHHHHHHHhchhhhhh----hHHHHHHHHHHHHHhhhHHHHH
Q 009074 164 QELMKQIEICQEENKILDKMHR---QKVAEVEKLTQTVRELEEAVLAGGAAANA----VRDYQRKVQEMNEERKTLDREL 236 (544)
Q Consensus 164 ~EL~kQiEIcqEEnkiLdk~hR---QKvaEVEKLtqTv~ELEEAvLaggaaaNA----vrdyqrq~~elneEkrtLerEL 236 (544)
..|..+|..++.+.+.|+..-. ....+..++...+.+++..+-..-..... ....+..+.+|+.+...++.+|
T Consensus 302 ~~l~d~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l 381 (562)
T PHA02562 302 TKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEEL 381 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHH
Confidence 3334444444444444444333 33334455555555555544443222211 2334555555555555555555
Q ss_pred h
Q 009074 237 A 237 (544)
Q Consensus 237 A 237 (544)
.
T Consensus 382 ~ 382 (562)
T PHA02562 382 A 382 (562)
T ss_pred H
Confidence 3
No 13
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=96.36 E-value=3.1 Score=48.67 Aligned_cols=40 Identities=15% Similarity=0.434 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHh----chhhhhhhHHHHHHHHHHHHHhhhHHH
Q 009074 195 TQTVRELEEAVLA----GGAAANAVRDYQRKVQEMNEERKTLDR 234 (544)
Q Consensus 195 tqTv~ELEEAvLa----ggaaaNAvrdyqrq~~elneEkrtLer 234 (544)
.+.+.+|+.+... -|+=.++|..|+.++..|+.+.+..+.
T Consensus 749 ~~~~~~le~~~~~eL~~~GvD~~~I~~l~~~i~~L~~~l~~ie~ 792 (1201)
T PF12128_consen 749 KEQLKELEQQYNQELAGKGVDPERIQQLKQEIEQLEKELKRIEE 792 (1201)
T ss_pred HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445444433 488888888888888777766655443
No 14
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.30 E-value=3.4 Score=48.54 Aligned_cols=15 Identities=27% Similarity=0.488 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHhhcC
Q 009074 301 KYHLRLKVLEESLRG 315 (544)
Q Consensus 301 K~~lRLk~LEe~lk~ 315 (544)
+|+-.+..|+.-|..
T Consensus 1079 ~le~qi~~l~~eL~e 1093 (1311)
T TIGR00606 1079 GYEKEIKHFKKELRE 1093 (1311)
T ss_pred HHHHHHHHHHHHHcc
Confidence 555666666666644
No 15
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=96.25 E-value=0.59 Score=44.79 Aligned_cols=118 Identities=25% Similarity=0.370 Sum_probs=75.3
Q ss_pred hHHhhhccHHHHHHHHHHHHHhhhchHHHHHHhhhHHHHHHHHHHHHHHHHHHhhh------hHHhhhhhHHHHHHHHHH
Q 009074 100 IEAILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASM------VDDLQNKNQELMKQIEIC 173 (544)
Q Consensus 100 ieaiiApLeaelk~~r~Ei~kLqddnkaLerltksKEaALleAeR~v~~AlakA~~------V~dlQN~N~EL~kQiEIc 173 (544)
|.-+|+.-..|++..|..+-+.|+..+++++-++-++..|......++. |.+-+. .++|+.+...+...++.-
T Consensus 59 Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~-L~~L~~dknL~eReeL~~kL~~~~~~l~~~ 137 (194)
T PF15619_consen 59 LPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKH-LKKLSEDKNLAEREELQRKLSQLEQKLQEK 137 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHcCCchhHHHHHHHHHHHHHHHHHH
Confidence 3457889999999999999999999999999999999999988887774 222222 244444444444333333
Q ss_pred HHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHHHhhhHHHHHhh
Q 009074 174 QEENKILDKMHRQKVAEVEKLTQTVRELEEAVLAGGAAANAVRDYQRKVQEMNEERKTLDRELAR 238 (544)
Q Consensus 174 qEEnkiLdk~hRQKvaEVEKLtqTv~ELEEAvLaggaaaNAvrdyqrq~~elneEkrtLerELAR 238 (544)
...+..|++- +-|+.+...--+..+..++.++..+...|..|+.+
T Consensus 138 ~~ki~~Lek~--------------------leL~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~ 182 (194)
T PF15619_consen 138 EKKIQELEKQ--------------------LELENKSFRRQLASEKKKHKEAQEEVKSLQEEIQR 182 (194)
T ss_pred HHHHHHHHHH--------------------HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333332221 11223333333555666677777777777777644
No 16
>PRK03918 chromosome segregation protein; Provisional
Probab=95.98 E-value=3.2 Score=45.45 Aligned_cols=19 Identities=5% Similarity=0.307 Sum_probs=10.1
Q ss_pred hhhHHHHHHHHHHHHHhHH
Q 009074 272 RFLQGEMQQLRDRLAITER 290 (544)
Q Consensus 272 R~LQGEmqrLrdKLAiaER 290 (544)
.-++.++..|+.++...+.
T Consensus 462 ~~l~~~~~~l~~~~~~l~~ 480 (880)
T PRK03918 462 KRIEKELKEIEEKERKLRK 480 (880)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3355555555555554443
No 17
>PRK04863 mukB cell division protein MukB; Provisional
Probab=95.92 E-value=6 Score=48.03 Aligned_cols=129 Identities=22% Similarity=0.304 Sum_probs=70.6
Q ss_pred hhhHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhchh-------hhhhhHHHHHHHHHHHHHhhhHH
Q 009074 161 NKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEAVLAGGA-------AANAVRDYQRKVQEMNEERKTLD 233 (544)
Q Consensus 161 N~N~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLtqTv~ELEEAvLagga-------aaNAvrdyqrq~~elneEkrtLe 233 (544)
++..++..+++.++.+..-+......--.++..+.+.+..|+.|=.-.|. .-+-+..|..++.++..+...++
T Consensus 383 eEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le~~~~~~~~~~~SdEeLe~~LenF~aklee~e~qL~elE 462 (1486)
T PRK04863 383 ARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALERAKQLCGLPDLTADNAEDWLEEFQAKEQEATEELLSLE 462 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333323333333445555666666666666544442 12347788888888888888888
Q ss_pred HHHhhhhhhhhhhhhhhhhccccCCCCccchhhH---------HHHhhhhHHHHHHHHHHHHHhHH
Q 009074 234 RELARAKVTANRVATVVANEWKDANDKVMPVKQW---------LEERRFLQGEMQQLRDRLAITER 290 (544)
Q Consensus 234 rELARaKv~AnRVA~vVAnEWKDendkVmPVKqW---------LEErR~LQGEmqrLrdKLAiaER 290 (544)
.+|..++.......... +.---..++|-|-.-| +.+-|.+-+-.++|+.+|+-.|+
T Consensus 463 ~kL~~lea~leql~~~~-~~l~~~~Gkv~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 527 (1486)
T PRK04863 463 QKLSVAQAAHSQFEQAY-QLVRKIAGEVSRSEAWDVARELLRRLREQRHLAEQLQQLRMRLSELEQ 527 (1486)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHcCCcCHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHH
Confidence 88877766554332221 1111122333333222 33455677778888888888887
No 18
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=95.89 E-value=4.5 Score=47.06 Aligned_cols=111 Identities=22% Similarity=0.325 Sum_probs=52.9
Q ss_pred hHHhhhhhHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHH-------HHHHHhch----hhhhhhHHHHHHHHH
Q 009074 156 VDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVREL-------EEAVLAGG----AAANAVRDYQRKVQE 224 (544)
Q Consensus 156 V~dlQN~N~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLtqTv~EL-------EEAvLagg----aaaNAvrdyqrq~~e 224 (544)
+.+++|+...|.+||+...++...+......-..++..+...+.++ ...|-.-- .....+.+..+.+..
T Consensus 392 ~~~~~~~l~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 471 (1163)
T COG1196 392 LAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELAE 471 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777888887777766655554444333333333333221 11111111 112223334444444
Q ss_pred HHHHhhhHHHHHhhhhhhhhhhhhhhhhccccCCCCccchhhHHHHh
Q 009074 225 MNEERKTLDRELARAKVTANRVATVVANEWKDANDKVMPVKQWLEER 271 (544)
Q Consensus 225 lneEkrtLerELARaKv~AnRVA~vVAnEWKDendkVmPVKqWLEEr 271 (544)
++.....+..+|..+..--++..+..-. .+.|-+|..|....
T Consensus 472 ~~~~~~~~~~~l~~~~~~~~~l~~~~~~-----~~~~~~~~~~~~~~ 513 (1163)
T COG1196 472 LQEELQRLEKELSSLEARLDRLEAEQRA-----SQGVRAVLEALESG 513 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh-----hhhHHHHHHHHhcc
Confidence 4445555555554444333333222111 55666777776554
No 19
>PRK11637 AmiB activator; Provisional
Probab=95.76 E-value=2.9 Score=43.16 Aligned_cols=39 Identities=10% Similarity=0.191 Sum_probs=16.1
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHH
Q 009074 162 KNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRE 200 (544)
Q Consensus 162 ~N~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLtqTv~E 200 (544)
+..+|..++...+.+..-|+....++-.++.+|.+.+.+
T Consensus 192 ~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~ 230 (428)
T PRK11637 192 KQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQK 230 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333444444444444444444444444443
No 20
>PHA02562 46 endonuclease subunit; Provisional
Probab=95.29 E-value=4.3 Score=42.11 Aligned_cols=24 Identities=13% Similarity=0.238 Sum_probs=14.9
Q ss_pred hHHHHHHHHHHHHHhhhHHHHHhh
Q 009074 215 VRDYQRKVQEMNEERKTLDRELAR 238 (544)
Q Consensus 215 vrdyqrq~~elneEkrtLerELAR 238 (544)
+.....+..++..++..+++|..+
T Consensus 381 l~~l~~~l~~~~~~~~~~~ke~~~ 404 (562)
T PHA02562 381 LAKLQDELDKIVKTKSELVKEKYH 404 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666666666666644
No 21
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=95.26 E-value=3.1 Score=40.35 Aligned_cols=106 Identities=26% Similarity=0.408 Sum_probs=52.5
Q ss_pred HHhhhhhHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhc-hhhhhhhHHHHHHHHHHHHHhhhHHHH
Q 009074 157 DDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEAVLAG-GAAANAVRDYQRKVQEMNEERKTLDRE 235 (544)
Q Consensus 157 ~dlQN~N~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLtqTv~ELEEAvLag-gaaaNAvrdyqrq~~elneEkrtLerE 235 (544)
++++.....-...+.-.++|++-+-..-..--.++..|..+...||..|-.. .--..-+.+|+..+..+..|...+-.+
T Consensus 198 ~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~ 277 (312)
T PF00038_consen 198 EELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREE 277 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHH
Confidence 3333333333334444555555555555555556666666666666665443 222333444444444444444444444
Q ss_pred HhhhhhhhhhhhhhhhhccccCCCCccchhhHHHH-----hhhhHHH
Q 009074 236 LARAKVTANRVATVVANEWKDANDKVMPVKQWLEE-----RRFLQGE 277 (544)
Q Consensus 236 LARaKv~AnRVA~vVAnEWKDendkVmPVKqWLEE-----rR~LQGE 277 (544)
+ .+. ..++. .+|-||.+|+- |++|.||
T Consensus 278 ~-------~~~----~~ey~----~Ll~~K~~Ld~EIatYR~LLEgE 309 (312)
T PF00038_consen 278 M-------ARQ----LREYQ----ELLDVKLALDAEIATYRKLLEGE 309 (312)
T ss_dssp H-------HHH----HHHHH----HHHHHHHHHHHHHHHHHHHHTCH
T ss_pred H-------HHH----HHHHH----HHHHHHHhHHHHHHHHHHHHhCc
Confidence 3 331 12332 35788888753 5555555
No 22
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=95.21 E-value=4.1 Score=45.06 Aligned_cols=109 Identities=25% Similarity=0.360 Sum_probs=64.3
Q ss_pred hhhhhhhhhHHHHhHHHHHHHHHHHHHHhhhccCCCCChhHHhhhccHHHHHHHHHHHHHhhhchHHHHHHhhhHHHHHH
Q 009074 61 NLEIKKINDEKRASMAAQFAAEATLRRVHAAQKDDDMPPIEAILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALL 140 (544)
Q Consensus 61 NLEiKklndEKK~alAAQfAAEAtLRRvha~QKdddmppieaiiApLeaelk~~r~Ei~kLqddnkaLerltksKEaALl 140 (544)
-.+|+++.+|=+ -+-..+.=-...+++|-.+.++. ...|+-|||++...+-.|..+.|+++-|-+-.--=...|.
T Consensus 112 e~ei~kl~~e~~-elr~~~~~~~k~~~~~re~~~~~----~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~ 186 (546)
T KOG0977|consen 112 EIEITKLREELK-ELRKKLEKAEKERRGAREKLDDY----LSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELA 186 (546)
T ss_pred HHHHHHhHHHHH-HHHHHHHHHHHHHhhhHHHHHHH----hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 356666666655 33334443344555555555554 3456778888888888888888887655432221112222
Q ss_pred HHHHHHHHHHHHhhhh-HHhhhhhHHHHHHHHHHHHHhH
Q 009074 141 EAERTVQVALAKASMV-DDLQNKNQELMKQIEICQEENK 178 (544)
Q Consensus 141 eAeR~v~~AlakA~~V-~dlQN~N~EL~kQiEIcqEEnk 178 (544)
. ++..+..+.+. -|+||++|+|+..|+-|+..++
T Consensus 187 ~----~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~ 221 (546)
T KOG0977|consen 187 R----ARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHK 221 (546)
T ss_pred H----HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccH
Confidence 1 22333333332 6899999999988887775443
No 23
>PRK02224 chromosome segregation protein; Provisional
Probab=95.07 E-value=7 Score=43.24 Aligned_cols=43 Identities=23% Similarity=0.277 Sum_probs=33.2
Q ss_pred hhccHHHHHHHHHHHHHhhhchHHHHHHhhhHHHHHHHHHHHH
Q 009074 104 LAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTV 146 (544)
Q Consensus 104 iApLeaelk~~r~Ei~kLqddnkaLerltksKEaALleAeR~v 146 (544)
+..++..|...+.++..|+++...++......+.+|.+++..|
T Consensus 407 ~~~~e~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l 449 (880)
T PRK02224 407 LGNAEDFLEELREERDELREREAELEATLRTARERVEEAEALL 449 (880)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777888888888888888888888888888888776433
No 24
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=95.06 E-value=5.2 Score=41.70 Aligned_cols=97 Identities=23% Similarity=0.361 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhc-hhhhhhhHHHHHHHHHHHHHhhhHHHHHhhhhhhhhhhhhh--hhhccccCCCCccch
Q 009074 188 VAEVEKLTQTVRELEEAVLAG-GAAANAVRDYQRKVQEMNEERKTLDRELARAKVTANRVATV--VANEWKDANDKVMPV 264 (544)
Q Consensus 188 vaEVEKLtqTv~ELEEAvLag-gaaaNAvrdyqrq~~elneEkrtLerELARaKv~AnRVA~v--VAnEWKDendkVmPV 264 (544)
-.++++|..+--+||-++-.- -+-.|- .+.|+..|+.||+.|.+.|..+ |++- ... +.+ -...+|-++-.
T Consensus 155 q~~le~Lr~EKVdlEn~LE~EQE~lvN~---L~Kqm~~l~~eKr~Lq~~l~~~-~s~~--~s~~d~~~-~~~~~Dt~e~~ 227 (310)
T PF09755_consen 155 QEELERLRREKVDLENTLEQEQEALVNR---LWKQMDKLEAEKRRLQEKLEQP-VSAP--PSPRDTVN-VSEENDTAERL 227 (310)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHccc-cCCC--CCcchHHh-hcccCCchhHH
Confidence 345667777777777777664 444554 5679999999999999999885 4421 122 222 24455555544
Q ss_pred hhHHHHhhhhHHHHHHHHHHHHHhHHhhhH
Q 009074 265 KQWLEERRFLQGEMQQLRDRLAITERTAKS 294 (544)
Q Consensus 265 KqWLEErR~LQGEmqrLrdKLAiaERtAka 294 (544)
--| .++|..|..|||..|+.+++.-.+
T Consensus 228 ~sh---I~~Lr~EV~RLR~qL~~sq~e~~~ 254 (310)
T PF09755_consen 228 SSH---IRSLRQEVSRLRQQLAASQQEHSE 254 (310)
T ss_pred HHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444 577899999999999988765433
No 25
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=94.88 E-value=15 Score=46.06 Aligned_cols=244 Identities=20% Similarity=0.303 Sum_probs=136.9
Q ss_pred ccCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHhHHHHHHHHHHHHHHhhhccCCCCChhHHhhhccHHH
Q 009074 31 LNLPVFPKLTEELSKVEEKLKLAENLIETKNLEIKKINDEKRASMAAQFAAEATLRRVHAAQKDDDMPPIEAILAPLEAE 110 (544)
Q Consensus 31 lKdKaveEl~~El~K~dEKLk~tE~lle~kNLEiKklndEKK~alAAQfAAEAtLRRvha~QKdddmppieaiiApLeae 110 (544)
.+++-+....+++.+++++|...|......-.-..++..|+- .|.-|..+|-.+-+. .++-.--.-+.-.-||.+
T Consensus 835 ~~ee~~~~~~~e~~~l~~~l~~~e~~~~ele~~~~~~~~e~~-~l~~~l~~e~~~~~~----aee~~~~~~~~k~~le~~ 909 (1930)
T KOG0161|consen 835 KTEEEMRAKEEEIQKLKEELQKSESKRKELEEKLVKLLEEKN-DLQEQLQAEKENLAE----AEELLERLRAEKQELEKE 909 (1930)
T ss_pred hhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 345556677778888888887777665544334445555443 666666665543322 222222333455566777
Q ss_pred HHHHHHHHHHhhhchHHHHHHhhhHHHHHHHHHHH---HHHHHHHhhh-hHHhhhhhHHHHHHHHHHHH-------HhHH
Q 009074 111 LKLARQEIAKLQDDNKALDRLTKSKEAALLEAERT---VQVALAKASM-VDDLQNKNQELMKQIEICQE-------ENKI 179 (544)
Q Consensus 111 lk~~r~Ei~kLqddnkaLerltksKEaALleAeR~---v~~AlakA~~-V~dlQN~N~EL~kQiEIcqE-------Enki 179 (544)
++....++...++-+..|++-.+.=+..+.+-+.. +...+.++.+ .....+++..|...|..|.+ |.|.
T Consensus 910 l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~kekk~ 989 (1930)
T KOG0161|consen 910 LKELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSLDENISKLSKEKKE 989 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777776666544443333322 2333333332 24555666666666655544 4555
Q ss_pred HHHHhhhHHH--------------HHHHHHHHHHHHHHHHHhc-hhhhh----------hhHHHHHHHHHHHHHhhhHHH
Q 009074 180 LDKMHRQKVA--------------EVEKLTQTVRELEEAVLAG-GAAAN----------AVRDYQRKVQEMNEERKTLDR 234 (544)
Q Consensus 180 Ldk~hRQKva--------------EVEKLtqTv~ELEEAvLag-gaaaN----------Avrdyqrq~~elneEkrtLer 234 (544)
|+..||+-.. -..||.+++.+||..+-.- -...+ .+.+.|..+.+++..+.-|++
T Consensus 990 lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~e~~~~~~~~~~el~~ 1069 (1930)
T KOG0161|consen 990 LEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQESIEELKKQKEELDN 1069 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 6666655332 2356677777776655432 11111 124455666666777777777
Q ss_pred HHhhhhhhhhhhhhhhhhccccCCCCccchhhHHHHhhhhHHHHHHHHHHHH
Q 009074 235 ELARAKVTANRVATVVANEWKDANDKVMPVKQWLEERRFLQGEMQQLRDRLA 286 (544)
Q Consensus 235 ELARaKv~AnRVA~vVAnEWKDendkVmPVKqWLEErR~LQGEmqrLrdKLA 286 (544)
+|+......+..-+=+.+ .-.-|.+....++=||..|.-|.+.|.
T Consensus 1070 ~l~kke~El~~l~~k~e~-------e~~~~~~l~k~i~eL~~~i~el~e~le 1114 (1930)
T KOG0161|consen 1070 QLKKKESELSQLQSKLED-------EQAEVAQLQKQIKELEARIKELEEELE 1114 (1930)
T ss_pred HHHHHHHHHHHHHHHhhH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777766666654333322 224566666667767777776666654
No 26
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=94.69 E-value=11 Score=43.87 Aligned_cols=42 Identities=21% Similarity=0.344 Sum_probs=27.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHhHHHH
Q 009074 37 PKLTEELSKVEEKLKLAENLIETKNLEIKKINDEKRASMAAQ 78 (544)
Q Consensus 37 eEl~~El~K~dEKLk~tE~lle~kNLEiKklndEKK~alAAQ 78 (544)
++...+|....+.|.-.+.++....-.+++|..++..++-.|
T Consensus 175 ~ea~~~L~~~~~nl~~~~~~~~el~~~l~~L~~q~~~a~~y~ 216 (1163)
T COG1196 175 EEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQ 216 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666677777777777777777776555433
No 27
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=94.47 E-value=4.9 Score=38.73 Aligned_cols=43 Identities=19% Similarity=0.271 Sum_probs=35.7
Q ss_pred hhHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHHHHHHhhcC
Q 009074 273 FLQGEMQQLRDRLAITERTAKSEAQLKEKYHLRLKVLEESLRG 315 (544)
Q Consensus 273 ~LQGEmqrLrdKLAiaERtAkaEaQLKeK~~lRLk~LEe~lk~ 315 (544)
-+...|..|.++|.-+|..|-..-.--.+|..++..||+.|..
T Consensus 173 ~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~ 215 (237)
T PF00261_consen 173 EYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEK 215 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667788999999999988877777788999999999988764
No 28
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=94.40 E-value=6 Score=47.48 Aligned_cols=201 Identities=21% Similarity=0.278 Sum_probs=103.8
Q ss_pred HHhHHHHHHHHHHHHHHhhhccCCCCChhHHhhhccHHHHHHHHHHHHHhhhchHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 009074 72 RASMAAQFAAEATLRRVHAAQKDDDMPPIEAILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALA 151 (544)
Q Consensus 72 K~alAAQfAAEAtLRRvha~QKdddmppieaiiApLeaelk~~r~Ei~kLqddnkaLerltksKEaALleAeR~v~~Ala 151 (544)
+.++.+|.+|.+ +.+-..+-|+..|..-+.+...||+ ++.||+--+ ...+.+
T Consensus 450 ~~~~~~~~~~~~---------------~~~~~~keL~e~i~~lk~~~~el~~-----------~q~~l~q~~--~ke~~e 501 (1317)
T KOG0612|consen 450 KEKLDEKCQAVA---------------ELEEMDKELEETIEKLKSEESELQR-----------EQKALLQHE--QKEVEE 501 (1317)
T ss_pred hhhHHHHHHHHh---------------hHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHh--hhHHHH
Confidence 346777777777 4444555555555555444444444 233332211 111122
Q ss_pred HhhhhHHhhhhhHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhch-hhhhh------hHHHHHHH--
Q 009074 152 KASMVDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEAVLAGG-AAANA------VRDYQRKV-- 222 (544)
Q Consensus 152 kA~~V~dlQN~N~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLtqTv~ELEEAvLagg-aaaNA------vrdyqrq~-- 222 (544)
++....++.+.|.+++-..++|-+.+.+.+.+--.+.+|+.++-.+||++.+-.- .++++ -.+|-.++
T Consensus 502 ---k~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~~kv~~~rk~le~~~~d~~~e~~~~~kl~~~~~e~~~~iq~ 578 (1317)
T KOG0612|consen 502 ---KLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADSLEKVNSLRKQLEEAELDMRAESEDAGKLRKHSKELSKQIQQ 578 (1317)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHhhHhhhhhhhhHHHHH
Confidence 2334445555555555555555555556666666677788888888888887753 33333 23443333
Q ss_pred ------------HHHHHHhhhHHHHHhhhhhhhhhhhhhhhhccccCCCCccchhhHHHHhhhhHHHHHHHHH-------
Q 009074 223 ------------QEMNEERKTLDRELARAKVTANRVATVVANEWKDANDKVMPVKQWLEERRFLQGEMQQLRD------- 283 (544)
Q Consensus 223 ------------~elneEkrtLerELARaKv~AnRVA~vVAnEWKDendkVmPVKqWLEErR~LQGEmqrLrd------- 283 (544)
+.+.+.+..|..+.+-....+-... -. -....|++.-++++|.-|..
T Consensus 579 ~~e~~~~~~d~l~~le~~k~~ls~~~~~~~~~~e~~~------~~--------~~~~~e~~~~l~~~i~sL~~~~~~~~~ 644 (1317)
T KOG0612|consen 579 ELEENRDLEDKLSLLEESKSKLSKENKKLRSELEKER------RQ--------RTEISEIIAELKEEISSLEETLKAGKK 644 (1317)
T ss_pred HhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HH--------HHHHHHHHHHHHhHHHHHHHHHHhhhh
Confidence 4444444455544443333222110 00 01233344444444443332
Q ss_pred --------HHHHhHHhhhHHH-HHHHHHHHHHHHHHHhhcCCC
Q 009074 284 --------RLAITERTAKSEA-QLKEKYHLRLKVLEESLRGSS 317 (544)
Q Consensus 284 --------KLAiaERtAkaEa-QLKeK~~lRLk~LEe~lk~~~ 317 (544)
+-+-.|+..-.|- +++.+|.+.++.+++.+.+..
T Consensus 645 ~l~k~~el~r~~~e~~~~~ek~~~e~~~e~~lk~~q~~~eq~~ 687 (1317)
T KOG0612|consen 645 ELLKVEELKRENQERISDSEKEALEIKLERKLKMLQNELEQEN 687 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2223344444433 789999999999998887753
No 29
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=94.32 E-value=7.9 Score=42.96 Aligned_cols=74 Identities=19% Similarity=0.284 Sum_probs=47.0
Q ss_pred cHHHHHHHHHHHHHhhhchHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHhHHHHHH
Q 009074 107 LEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKILDKM 183 (544)
Q Consensus 107 Leaelk~~r~Ei~kLqddnkaLerltksKEaALleAeR~v~~AlakA~~V~dlQN~N~EL~kQiEIcqEEnkiLdk~ 183 (544)
|+..|....+|...|..-+..|+.-..+-...+...+..++..-. -++.|+.+++++....+...+|+..|..-
T Consensus 141 lQ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~e---e~e~L~~~~kel~~~~e~l~~E~~~L~~q 214 (546)
T PF07888_consen 141 LQNQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEE---EMEQLKQQQKELTESSEELKEERESLKEQ 214 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777777777777777777776665555555555555544443 35666666777777777666676666543
No 30
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=94.08 E-value=4.4 Score=45.66 Aligned_cols=135 Identities=23% Similarity=0.341 Sum_probs=65.3
Q ss_pred hhhhhHHH--HhHHHHHHHHHHHHHH--hhhccC---------CCCChhHHhhhccHHHHHHHHHHHHHhhhchHHHHHH
Q 009074 65 KKINDEKR--ASMAAQFAAEATLRRV--HAAQKD---------DDMPPIEAILAPLEAELKLARQEIAKLQDDNKALDRL 131 (544)
Q Consensus 65 KklndEKK--~alAAQfAAEAtLRRv--ha~QKd---------ddmppieaiiApLeaelk~~r~Ei~kLqddnkaLerl 131 (544)
|+|.+|++ ..+.+|.++|-.=|+- +++.+- +---+.-.=..-||.||+..|.|+...+|.+..|+.-
T Consensus 495 krL~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~ 574 (697)
T PF09726_consen 495 KRLAEERRQRASLEKQLQEERKARKEEEEKAARALAQAQATRQECAESCRQRRRQLESELKKLRRELKQKEEQIRELESE 574 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666653 4566677666553332 111111 1111122234556666666666666666666666654
Q ss_pred hh----h-HH----HH-HHHHHHHHHHHHHHhhhhHH-h--hhhh-HHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHH
Q 009074 132 TK----S-KE----AA-LLEAERTVQVALAKASMVDD-L--QNKN-QELMKQIEICQEENKILDKMHRQKVAEVEKLTQT 197 (544)
Q Consensus 132 tk----s-KE----aA-LleAeR~v~~AlakA~~V~d-l--QN~N-~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLtqT 197 (544)
.. - || .. |+.| |+..-+|....+. | +|+. +||..-+-...-+..|++...|+|..||+-|.+.
T Consensus 575 ~~~lr~~~~e~~~~~e~L~~a---L~amqdk~~~LE~sLsaEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~k 651 (697)
T PF09726_consen 575 LQELRKYEKESEKDTEVLMSA---LSAMQDKNQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAK 651 (697)
T ss_pred HHHHHHHHhhhhhhHHHHHHH---HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 31 0 22 11 1111 1111122222211 0 1111 3444444444445555666788899999999998
Q ss_pred HHHHH
Q 009074 198 VRELE 202 (544)
Q Consensus 198 v~ELE 202 (544)
|.++-
T Consensus 652 i~~~~ 656 (697)
T PF09726_consen 652 IAQLL 656 (697)
T ss_pred HHHHH
Confidence 88874
No 31
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=93.96 E-value=2.9 Score=46.25 Aligned_cols=126 Identities=22% Similarity=0.350 Sum_probs=68.6
Q ss_pred hhhhHHhhhhhHHHHHHHHHHH----HHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHHH
Q 009074 153 ASMVDDLQNKNQELMKQIEICQ----EENKILDKMHRQKVAEVEKLTQTVRELEEAVLAGGAAANAVRDYQRKVQEMNEE 228 (544)
Q Consensus 153 A~~V~dlQN~N~EL~kQiEIcq----EEnkiLdk~hRQKvaEVEKLtqTv~ELEEAvLaggaaaNAvrdyqrq~~elneE 228 (544)
..+|+.-.++..+|..|-|... +|.+-|...+.-+..|..+.-+.|.++.+-+.. ...-++.....+.+|..+
T Consensus 400 ~~~v~~s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~---~~~e~~~Kee~~~qL~~e 476 (594)
T PF05667_consen 400 QALVEASEQRLVELAQQWEKHRAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIKE---IEEEIRQKEELYKQLVKE 476 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 3456666666777777766543 344444444332233333333333333222221 111233444444444444
Q ss_pred hhhHHHHHhhhhhhhhhhhhhhhhccccCCCCccchhhHHHHhhhhHHHHHHHHHHHH
Q 009074 229 RKTLDRELARAKVTANRVATVVANEWKDANDKVMPVKQWLEERRFLQGEMQQLRDRLA 286 (544)
Q Consensus 229 krtLerELARaKv~AnRVA~vVAnEWKDendkVmPVKqWLEErR~LQGEmqrLrdKLA 286 (544)
...+....-| ..|..|+=-+|.|=-|-.. -+..-|.+-|-||-||..|.+||-
T Consensus 477 ~e~~~k~~~R-s~Yt~RIlEIv~NI~KQk~----eI~KIl~DTr~lQkeiN~l~gkL~ 529 (594)
T PF05667_consen 477 LEKLPKDVNR-SAYTRRILEIVKNIRKQKE----EIEKILSDTRELQKEINSLTGKLD 529 (594)
T ss_pred HHhCCCCCCH-HHHHHHHHHHHHhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444333 3455566666999888763 355778899999999999999874
No 32
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=93.66 E-value=7.4 Score=37.83 Aligned_cols=95 Identities=22% Similarity=0.300 Sum_probs=49.7
Q ss_pred ChhHHhhhccHHHHHHHHHHHHHhhhchHHHHHHhhhHHHHHHHHHHHHHHHHHHh-----------hhhHHhhhhhHHH
Q 009074 98 PPIEAILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKA-----------SMVDDLQNKNQEL 166 (544)
Q Consensus 98 ppieaiiApLeaelk~~r~Ei~kLqddnkaLerltksKEaALleAeR~v~~AlakA-----------~~V~dlQN~N~EL 166 (544)
|+...+-..++.+|+.+|+.|..+.-++.-|+--+.+=...+.+....+......- .-+++.--...+|
T Consensus 43 ~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~l 122 (312)
T PF00038_consen 43 EEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDL 122 (312)
T ss_dssp ---HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHH
Confidence 33344445556666666666666665555555444443333333333332222111 1222222334556
Q ss_pred HHHHHHHHHHhHHHHHHhhhHHHHHH
Q 009074 167 MKQIEICQEENKILDKMHRQKVAEVE 192 (544)
Q Consensus 167 ~kQiEIcqEEnkiLdk~hRQKvaEVE 192 (544)
..+|+..++|-.++.++|-+.+.++.
T Consensus 123 e~~i~~L~eEl~fl~~~heeEi~~L~ 148 (312)
T PF00038_consen 123 ENQIQSLKEELEFLKQNHEEEIEELR 148 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhh
Confidence 67777888888888888887665554
No 33
>PRK09039 hypothetical protein; Validated
Probab=93.58 E-value=10 Score=39.08 Aligned_cols=41 Identities=20% Similarity=0.239 Sum_probs=22.4
Q ss_pred hhHHhhhhhHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHH
Q 009074 155 MVDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLT 195 (544)
Q Consensus 155 ~V~dlQN~N~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLt 195 (544)
.|.-|+.++..|++||...+.+-..++...+..-..++.|.
T Consensus 138 ~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~ 178 (343)
T PRK09039 138 QVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLG 178 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666655555555544444444443
No 34
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=93.16 E-value=12 Score=42.87 Aligned_cols=231 Identities=24% Similarity=0.296 Sum_probs=108.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhhhhhhhhh---hhHHHHhHHHHHHHHHHHHHHhhhccCCCCChhHHhhhccHHHHHH
Q 009074 37 PKLTEELSKVEEKLKLAENLIETKNLEIKKI---NDEKRASMAAQFAAEATLRRVHAAQKDDDMPPIEAILAPLEAELKL 113 (544)
Q Consensus 37 eEl~~El~K~dEKLk~tE~lle~kNLEiKkl---ndEKK~alAAQfAAEAtLRRvha~QKdddmppieaiiApLeaelk~ 113 (544)
+++..|...|...|..+..-|.+---+|+++ ..+|-.++.=-.+|+.+ -+.+.+-++.++.-.
T Consensus 6 ~~~q~E~e~L~~ele~~~~~l~~~~~~i~~fwspElkrer~~rkee~a~l~--------------~~k~qlr~~q~e~q~ 71 (775)
T PF10174_consen 6 ERLQRENERLRRELERKQSKLGSSMNSIKTFWSPELKRERALRKEEAAELS--------------RLKEQLRVTQEENQK 71 (775)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHhHhcccchhhHHHHHHHHHHHHHHH--------------hHHHHHHHHHhhHHH
Confidence 4556666666666666666666555566552 11222223323333332 122233344444445
Q ss_pred HHHHHHHhhhchHH---HHHHhhhHHHHHHHHHHHHHHHHHHhh--------hhHHhhhhhHHHHHHHHHHHHHhHHHHH
Q 009074 114 ARQEIAKLQDDNKA---LDRLTKSKEAALLEAERTVQVALAKAS--------MVDDLQNKNQELMKQIEICQEENKILDK 182 (544)
Q Consensus 114 ~r~Ei~kLqddnka---LerltksKEaALleAeR~v~~AlakA~--------~V~dlQN~N~EL~kQiEIcqEEnkiLdk 182 (544)
+..+|..||+.-|+ ++||.-..+.+-.+.+..-. +.++. --|-++..++.|.+-+|-.|...-.+-.
T Consensus 72 ~~~ei~~LqeELr~q~e~~rL~~~~e~~~~e~e~l~~--ld~~~~q~~rl~~E~er~~~El~~lr~~lE~~q~~~e~~q~ 149 (775)
T PF10174_consen 72 AQEEIQALQEELRAQRELNRLQQELEKAQYEFESLQE--LDKAQEQFERLQAERERLQRELERLRKTLEELQLRIETQQQ 149 (775)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHhhhcccccchhhh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555544 23444443443333332111 22221 1233334444444444444443333333
Q ss_pred HhhhHHHHHHHHHHHHHH--HH-HHHHhchhhhhhhHHHHHHHHHHHHHhhhHHHHHhhhhhhhhh-----------hhh
Q 009074 183 MHRQKVAEVEKLTQTVRE--LE-EAVLAGGAAANAVRDYQRKVQEMNEERKTLDRELARAKVTANR-----------VAT 248 (544)
Q Consensus 183 ~hRQKvaEVEKLtqTv~E--LE-EAvLaggaaaNAvrdyqrq~~elneEkrtLerELARaKv~AnR-----------VA~ 248 (544)
..-....+|+||.--+.. +. ++.-.++.+...+++|...++.|...+..++.+..-++...+| =|.
T Consensus 150 ~l~~~~eei~kL~e~L~~~g~~~~~~~~~~~~~~~~~~~e~~~~~le~lle~~e~~~~~~r~~l~~~~~~~~~~a~t~al 229 (775)
T PF10174_consen 150 TLDKADEEIEKLQEMLQSKGLSAEAEEEDNEALRRIREAEARIMRLESLLERKEKEHMEAREQLHRRLQMERDDAETEAL 229 (775)
T ss_pred HHHHHHHHHHHHHHHHhhcCCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcCCCchhHHHH
Confidence 333334444444432210 00 1122223444458999999999988888887777444333333 222
Q ss_pred hhhhccccCCCCccchhhHHHHhhhhHHHHHHHHHHHHHh
Q 009074 249 VVANEWKDANDKVMPVKQWLEERRFLQGEMQQLRDRLAIT 288 (544)
Q Consensus 249 vVAnEWKDendkVmPVKqWLEErR~LQGEmqrLrdKLAia 288 (544)
-..-+-||. +..-...-|+. +++|+.+|+..+..+
T Consensus 230 q~~ie~Kd~--ki~~lEr~l~~---le~Ei~~L~~~~~~~ 264 (775)
T PF10174_consen 230 QTVIEEKDT--KIASLERMLRD---LEDEIYRLRSRGELS 264 (775)
T ss_pred HHHHHHHHH--HHHHHHHHHHH---HHHHHHHHHhccccc
Confidence 223344555 44444344433 888888887766543
No 35
>PRK11637 AmiB activator; Provisional
Probab=92.92 E-value=13 Score=38.49 Aligned_cols=23 Identities=17% Similarity=0.369 Sum_probs=12.2
Q ss_pred hHHHHHHHHHHHHHhhhHHHHHh
Q 009074 215 VRDYQRKVQEMNEERKTLDRELA 237 (544)
Q Consensus 215 vrdyqrq~~elneEkrtLerELA 237 (544)
...++.++.+|..+...|+.+|+
T Consensus 228 ~~~~~~~l~~l~~~~~~L~~~I~ 250 (428)
T PRK11637 228 LQKDQQQLSELRANESRLRDSIA 250 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555553
No 36
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=92.63 E-value=4.3 Score=45.72 Aligned_cols=124 Identities=18% Similarity=0.289 Sum_probs=75.6
Q ss_pred hhhhhhhhhhhhHHHHhHHHHHHH----HHHHHHHhhhccCCCCC--------------hhHH-----------------
Q 009074 58 ETKNLEIKKINDEKRASMAAQFAA----EATLRRVHAAQKDDDMP--------------PIEA----------------- 102 (544)
Q Consensus 58 e~kNLEiKklndEKK~alAAQfAA----EAtLRRvha~QKdddmp--------------piea----------------- 102 (544)
-..++.++-=|+--++||||-+=| +-+|++|-.--.+-.++ ||.+
T Consensus 330 ~~r~~~~~~~ddH~RDALAAA~kAY~~yk~kl~~vEr~~~~~g~~~d~~rika~VIrG~~l~eal~~~~e~~~p~e~~~~ 409 (652)
T COG2433 330 ALRTLKISVSDDHERDALAAAYKAYLAYKPKLEKVERKLPELGIWKDVERIKALVIRGYPLAEALSKVKEEERPREKEGT 409 (652)
T ss_pred HHhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHeecCCcHHHHHHHHHhhhcccccccc
Confidence 345677788889999999987654 55778877655554331 1111
Q ss_pred ------hhhccHHHHHHHHHHHHHhhhchHHHHHHhhhHHHHHHHHHHHHHHH-------HHHhhhhHHhhhhhHHHHHH
Q 009074 103 ------ILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVA-------LAKASMVDDLQNKNQELMKQ 169 (544)
Q Consensus 103 ------iiApLeaelk~~r~Ei~kLqddnkaLerltksKEaALleAeR~v~~A-------lakA~~V~dlQN~N~EL~kQ 169 (544)
.+.+.+.+|+.+..-+.+|+..|+.|++.+...++.+-..+..+..+ +-+-.-+..+++.+..|.+.
T Consensus 410 ~~~e~~ei~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~ 489 (652)
T COG2433 410 EEEERREITVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKE 489 (652)
T ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 34566666777777777788888888777776666555554444443 33333445555666666665
Q ss_pred HHHHHHHhHHHH
Q 009074 170 IEICQEENKILD 181 (544)
Q Consensus 170 iEIcqEEnkiLd 181 (544)
++....+-..|+
T Consensus 490 L~e~~~~ve~L~ 501 (652)
T COG2433 490 LEEKKKRVEELE 501 (652)
T ss_pred HHHHHHHHHHHH
Confidence 555444444443
No 37
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=92.35 E-value=15 Score=44.20 Aligned_cols=94 Identities=20% Similarity=0.255 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHHHHHhc-hhhhhh---hHHHHHHHHHHHHHhhhHHHHHhhhhhhhhhhhhhhhhccccCCCCccch
Q 009074 189 AEVEKLTQTVRELEEAVLAG-GAAANA---VRDYQRKVQEMNEERKTLDRELARAKVTANRVATVVANEWKDANDKVMPV 264 (544)
Q Consensus 189 aEVEKLtqTv~ELEEAvLag-gaaaNA---vrdyqrq~~elneEkrtLerELARaKv~AnRVA~vVAnEWKDendkVmPV 264 (544)
.+|+++-+.+..|+..|-.- -+-.|+ +-.+|-.++++..+...++.|+.--....+- ....+.|..- -.
T Consensus 907 ~kv~~~~~~~~~l~~~i~k~~~~i~~s~~~i~k~q~~l~~le~~~~~~e~e~~~L~e~~~~-~~~k~~E~~~------~~ 979 (1293)
T KOG0996|consen 907 DKVEKINEQLDKLEADIAKLTVAIKTSDRNIAKAQKKLSELEREIEDTEKELDDLTEELKG-LEEKAAELEK------EY 979 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHH------HH
Confidence 57788888888888777652 333343 6777888888888888888877443333322 1111111100 12
Q ss_pred hhHHHHhhhhHHHHHHHHHHHHHhH
Q 009074 265 KQWLEERRFLQGEMQQLRDRLAITE 289 (544)
Q Consensus 265 KqWLEErR~LQGEmqrLrdKLAiaE 289 (544)
+--.+-.+=+..+++.+++.+.--+
T Consensus 980 ~e~~~~~~E~k~~~~~~k~~~e~i~ 1004 (1293)
T KOG0996|consen 980 KEAEESLKEIKKELRDLKSELENIK 1004 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2333444456777777777765443
No 38
>PRK03918 chromosome segregation protein; Provisional
Probab=92.19 E-value=22 Score=39.28 Aligned_cols=12 Identities=17% Similarity=0.382 Sum_probs=5.6
Q ss_pred HHHHHHHHHhhc
Q 009074 303 HLRLKVLEESLR 314 (544)
Q Consensus 303 ~lRLk~LEe~lk 314 (544)
+..+..|++.+.
T Consensus 418 ~~~i~eL~~~l~ 429 (880)
T PRK03918 418 KKEIKELKKAIE 429 (880)
T ss_pred HHHHHHHHHHHH
Confidence 344445554443
No 39
>PRK04863 mukB cell division protein MukB; Provisional
Probab=91.87 E-value=39 Score=41.52 Aligned_cols=145 Identities=19% Similarity=0.305 Sum_probs=88.5
Q ss_pred HhhhhHHhhhhhHHHHHHHHHHHHHhHHHHHHhhh---HHHHHHHHHHHHHHHHHHHHhchhhhhhhHH----HHHHHHH
Q 009074 152 KASMVDDLQNKNQELMKQIEICQEENKILDKMHRQ---KVAEVEKLTQTVRELEEAVLAGGAAANAVRD----YQRKVQE 224 (544)
Q Consensus 152 kA~~V~dlQN~N~EL~kQiEIcqEEnkiLdk~hRQ---KvaEVEKLtqTv~ELEEAvLaggaaaNAvrd----yqrq~~e 224 (544)
-|.-+.-++++..+|.+.++.-|.-.++|+..+.+ -+.-.+-|.+...++|..+..-......+.. -+.+..+
T Consensus 511 ~~~~~~~~~~~~~~l~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~q 590 (1486)
T PRK04863 511 LAEQLQQLRMRLSELEQRLRQQQRAERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLSESVSEARERRMALRQQLEQ 590 (1486)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445677888888888888888888888887662 1111344444455555555443322222111 1222333
Q ss_pred HHHHhhhHHHHHhhhhhhhhhhhhhhhhccccCCCCccc----hhhHHHHhhhhHHHHHHHHHHHHHhHHhhhHHHHHHH
Q 009074 225 MNEERKTLDRELARAKVTANRVATVVANEWKDANDKVMP----VKQWLEERRFLQGEMQQLRDRLAITERTAKSEAQLKE 300 (544)
Q Consensus 225 lneEkrtLerELARaKv~AnRVA~vVAnEWKDendkVmP----VKqWLEErR~LQGEmqrLrdKLAiaERtAkaEaQLKe 300 (544)
|......|+ . .|.+|--..+.+.- .-.|++-+.-+-.-||++-++. |.+ .+-++
T Consensus 591 L~~~i~~l~----------~-----~ap~W~~a~~al~~L~eq~g~~~~~~~~v~~~mq~~~~~~----~~~---~~~~~ 648 (1486)
T PRK04863 591 LQARIQRLA----------A-----RAPAWLAAQDALARLREQSGEEFEDSQDVTEYMQQLLERE----REL---TVERD 648 (1486)
T ss_pred HHHHHHHHH----------H-----hChHHHhhHHHHHHHHHhcchhhcCHHHHHHHHHHHHHHH----HHH---HHHHH
Confidence 333322221 1 25668777766653 3368888888888899888763 333 34578
Q ss_pred HHHHHHHHHHHhhcCCCC
Q 009074 301 KYHLRLKVLEESLRGSSN 318 (544)
Q Consensus 301 K~~lRLk~LEe~lk~~~s 318 (544)
+++.+...|++-+...++
T Consensus 649 ~~~~~~~~L~~~i~~l~~ 666 (1486)
T PRK04863 649 ELAARKQALDEEIERLSQ 666 (1486)
T ss_pred HHHHHHHHHHHHHHhhhc
Confidence 899999999999987644
No 40
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=91.81 E-value=1.9 Score=49.49 Aligned_cols=81 Identities=26% Similarity=0.437 Sum_probs=63.9
Q ss_pred HHHhhhchHHHHHHhhhHHHHHHHHHHHHHHHHHHhhh-hHHhhhhhHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHH
Q 009074 118 IAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASM-VDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQ 196 (544)
Q Consensus 118 i~kLqddnkaLerltksKEaALleAeR~v~~AlakA~~-V~dlQN~N~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLtq 196 (544)
|+.+.|+|+-|-.+++-||-.|++-.+....-..|-.| |++.--+.+-++=-+|...-||.||.-..||+.+||++|..
T Consensus 464 ~e~q~~Enk~~~~~~~ekd~~l~~~kq~~d~e~~rik~ev~eal~~~k~~q~kLe~sekEN~iL~itlrQrDaEi~RL~e 543 (861)
T PF15254_consen 464 IENQKEENKRLRKMFQEKDQELLENKQQFDIETTRIKIEVEEALVNVKSLQFKLEASEKENQILGITLRQRDAEIERLRE 543 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhHhhhHHHHHHHHHHHHHH
Confidence 34444999999999999999999988877766666544 34444555666677888999999999999999999999854
Q ss_pred HH
Q 009074 197 TV 198 (544)
Q Consensus 197 Tv 198 (544)
-.
T Consensus 544 Lt 545 (861)
T PF15254_consen 544 LT 545 (861)
T ss_pred HH
Confidence 33
No 41
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=91.75 E-value=14 Score=36.34 Aligned_cols=30 Identities=17% Similarity=0.277 Sum_probs=18.3
Q ss_pred hHHHHHHHHHHHHHhhhHHHHHhhhhhhhh
Q 009074 215 VRDYQRKVQEMNEERKTLDRELARAKVTAN 244 (544)
Q Consensus 215 vrdyqrq~~elneEkrtLerELARaKv~An 244 (544)
+...+.++.+++.+...++..|....++|=
T Consensus 248 l~~~~~~l~~~~~~l~~~~~~l~~~~i~AP 277 (423)
T TIGR01843 248 LTEAQARLAELRERLNKARDRLQRLIIRSP 277 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcEEECC
Confidence 444556666666666666666666665553
No 42
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=91.51 E-value=35 Score=40.31 Aligned_cols=208 Identities=20% Similarity=0.262 Sum_probs=95.4
Q ss_pred HHHHHHHHhhhccCCCCChhHHhhhccHHHHHHHHHHHHHhhhchHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhHHhh
Q 009074 81 AEATLRRVHAAQKDDDMPPIEAILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQ 160 (544)
Q Consensus 81 AEAtLRRvha~QKdddmppieaiiApLeaelk~~r~Ei~kLqddnkaLerltksKEaALleAeR~v~~AlakA~~V~dlQ 160 (544)
.+..|..++.-..+=+---|+.+++.+ ..+-.++.+...++....+|..-...=++........+..++.. ....++
T Consensus 325 ~~~~L~~i~~~~~~ye~~~i~~~~~~~-~~l~~~~~~~~~l~~~~~~Lt~~~~di~~ky~~~~~~l~~~~~~--~~~~~~ 401 (1201)
T PF12128_consen 325 IKSELDEIEQQKKDYEDADIEQLIARV-DQLPEWRNELENLQEQLDLLTSKHQDIESKYNKLKQKLEEAFNR--QQERLQ 401 (1201)
T ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH
Confidence 344555555444332222355555554 34566777777777777777766666555555555555554432 333333
Q ss_pred hhhHHHHHHHHH----HHHHhHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHHHhhhHHHH
Q 009074 161 NKNQELMKQIEI----CQEENKILDKMHR-QKVAEVEKLTQTVRELEEAVLAGGAAANAVRDYQRKVQEMNEERKTLDRE 235 (544)
Q Consensus 161 N~N~EL~kQiEI----cqEEnkiLdk~hR-QKvaEVEKLtqTv~ELEEAvLaggaaaNAvrdyqrq~~elneEkrtLerE 235 (544)
++..++..++.- +.++..-|..-.| +....++.+.+....+... -+..+.-.+.-....++.++..+++.+
T Consensus 402 ~~~~~~~e~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----l~~l~~~~~~~~~~~e~~~~~~~~~~~ 477 (1201)
T PF12128_consen 402 AQQDEIREEKAERREQIEEEYQALEQELRQQSQEQLEELQEQREQLKSE----LAELKQQLKNPQYTEEEKEQLEQADKR 477 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhCcCCCHHHHHHHHHHHHH
Confidence 333333222222 1122222222122 2222333333332222221 223333334444456666666666666
Q ss_pred HhhhhhhhhhhhhhhhhccccCCCCccchhhHHHHhhhhHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHHHHHHhhcC
Q 009074 236 LARAKVTANRVATVVANEWKDANDKVMPVKQWLEERRFLQGEMQQLRDRLAITERTAKSEAQLKEKYHLRLKVLEESLRG 315 (544)
Q Consensus 236 LARaKv~AnRVA~vVAnEWKDendkVmPVKqWLEErR~LQGEmqrLrdKLAiaERtAkaEaQLKeK~~lRLk~LEe~lk~ 315 (544)
+.++.-..+-.. ..+.-++.+.+.++.+-..++-......+-.++++-++..|+.-|-+
T Consensus 478 ~~~a~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~L~p 536 (1201)
T PF12128_consen 478 LEQAQEQQNQAQ---------------------QAVEELQAEEQELRKERDQAEEELRQARRELEELRAQIAELQRQLDP 536 (1201)
T ss_pred HHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 655544333211 11222333444444443334433333334445567777777777754
Q ss_pred C
Q 009074 316 S 316 (544)
Q Consensus 316 ~ 316 (544)
.
T Consensus 537 ~ 537 (1201)
T PF12128_consen 537 Q 537 (1201)
T ss_pred C
Confidence 3
No 43
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=91.11 E-value=41 Score=40.90 Aligned_cols=33 Identities=27% Similarity=0.298 Sum_probs=21.3
Q ss_pred hHHHHhhhhHHHHHHHHHHHHHhHHhhhHHHHHH
Q 009074 266 QWLEERRFLQGEMQQLRDRLAITERTAKSEAQLK 299 (544)
Q Consensus 266 qWLEErR~LQGEmqrLrdKLAiaERtAkaEaQLK 299 (544)
.|--+.-++|+|.||+...---. |-...|+|++
T Consensus 671 ~~e~~lk~~q~~~eq~~~E~~~~-~L~~~e~~~~ 703 (1317)
T KOG0612|consen 671 KLERKLKMLQNELEQENAEHHRL-RLQDKEAQMK 703 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHH
Confidence 56677888888888887765554 2222255555
No 44
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=90.93 E-value=43 Score=40.30 Aligned_cols=94 Identities=18% Similarity=0.180 Sum_probs=43.6
Q ss_pred hccCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHhHHHHHHHHHHHHHHhhhccCCCCChhHHhhhccHH
Q 009074 30 ALNLPVFPKLTEELSKVEEKLKLAENLIETKNLEIKKINDEKRASMAAQFAAEATLRRVHAAQKDDDMPPIEAILAPLEA 109 (544)
Q Consensus 30 ~lKdKaveEl~~El~K~dEKLk~tE~lle~kNLEiKklndEKK~alAAQfAAEAtLRRvha~QKdddmppieaiiApLea 109 (544)
+.+-.-|.||..++..+++.+..++..+....=.+..|..|.. +--.|.++-|-..-+.--+.
T Consensus 738 ~~R~~ri~el~~~IaeL~~~i~~l~~~l~~l~~r~~~L~~e~~-----------------~~Ps~~dL~~A~~~l~~A~~ 800 (1353)
T TIGR02680 738 RARLRRIAELDARLAAVDDELAELARELRALGARQRALADELA-----------------GAPSDRSLRAAHRRAAEAER 800 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------hCCCchHHHHHHHHHHHHHH
Confidence 3344456666666666666666665555543333333333322 11122222222222222344
Q ss_pred HHHHHHHHHHHhhhchHHHHHHhhhHHHHHH
Q 009074 110 ELKLARQEIAKLQDDNKALDRLTKSKEAALL 140 (544)
Q Consensus 110 elk~~r~Ei~kLqddnkaLerltksKEaALl 140 (544)
++..+..++..+++.-.+..+-....+.++.
T Consensus 801 ~~~~a~~~l~~a~~~l~~a~~~~~~a~~~l~ 831 (1353)
T TIGR02680 801 QAESAERELARAARKAAAAAAAWKQARRELE 831 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555544444444433
No 45
>PRK10884 SH3 domain-containing protein; Provisional
Probab=89.89 E-value=3.7 Score=39.90 Aligned_cols=74 Identities=18% Similarity=0.316 Sum_probs=51.1
Q ss_pred CCChhHHhhhccHHHHHHHHHHHHHhhhchHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHH
Q 009074 96 DMPPIEAILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQE 175 (544)
Q Consensus 96 dmppieaiiApLeaelk~~r~Ei~kLqddnkaLerltksKEaALleAeR~v~~AlakA~~V~dlQN~N~EL~kQiEIcqE 175 (544)
+-||.-..+.-||.+|...+.+++.+..+....- .+.+..+.. ....+.+|+++|++|..|++..+.
T Consensus 87 ~~p~~~~rlp~le~el~~l~~~l~~~~~~~~~~~----------~~l~~~~~~---~~~~~~~L~~~n~~L~~~l~~~~~ 153 (206)
T PRK10884 87 TTPSLRTRVPDLENQVKTLTDKLNNIDNTWNQRT----------AEMQQKVAQ---SDSVINGLKEENQKLKNQLIVAQK 153 (206)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH----------HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888889999999999988888776633111 111111111 233467799999999999999998
Q ss_pred HhHHHHH
Q 009074 176 ENKILDK 182 (544)
Q Consensus 176 EnkiLdk 182 (544)
|+..|+.
T Consensus 154 ~~~~l~~ 160 (206)
T PRK10884 154 KVDAANL 160 (206)
T ss_pred HHHHHHH
Confidence 8877653
No 46
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=89.77 E-value=56 Score=39.77 Aligned_cols=230 Identities=17% Similarity=0.215 Sum_probs=125.1
Q ss_pred chhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHhHH-HHHHHHHHHHHHhhhccCCCCChhHHhhhccHHHHHH
Q 009074 35 VFPKLTEELSKVEEKLKLAENLIETKNLEIKKINDEKRASMA-AQFAAEATLRRVHAAQKDDDMPPIEAILAPLEAELKL 113 (544)
Q Consensus 35 aveEl~~El~K~dEKLk~tE~lle~kNLEiKklndEKK~alA-AQfAAEAtLRRvha~QKdddmppieaiiApLeaelk~ 113 (544)
-|+++..+|.-+.+...--++-+.----|.+.+...|..+|+ .+-=.|.+.-+-|.-|. ++--.-+.|-.
T Consensus 268 ~I~~~~~rv~~L~e~~sek~~~~k~~e~ek~~lE~~k~~al~fL~kenel~~~~~~~~q~---------~~~~~~~ki~~ 338 (1293)
T KOG0996|consen 268 PIEELMRRVERLNEDRSEKENRVKLVEKEKKALEGPKNEALEFLKKENELFRKKNKLCQY---------ILYESRAKIAE 338 (1293)
T ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHH
Confidence 478899999999998888888888777888888888887775 23334444333333332 33333444555
Q ss_pred HHHHHHHhhhchHHHHHHh---hhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHhHHHHHHhhhHHHH
Q 009074 114 ARQEIAKLQDDNKALDRLT---KSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKILDKMHRQKVAE 190 (544)
Q Consensus 114 ~r~Ei~kLqddnkaLerlt---ksKEaALleAeR~v~~AlakA~~V~dlQN~N~EL~kQiEIcqEEnkiLdk~hRQKvaE 190 (544)
+.+++.++.++-+....=+ +..+....++.+. ..-++ +.+++--.+.|+.+..-++.-...--..
T Consensus 339 ~~~~~~~~~e~lk~~~ek~~~e~~~~~~k~e~~~~--~~~e~----------~~~~kn~~~~~k~~~~~~e~~~vk~~E~ 406 (1293)
T KOG0996|consen 339 MQEELEKIEEGLKDENEKFDIESNEEVEKNEAVKK--EIKER----------AKELKNKFESLKKKFQDLEREDVKREEK 406 (1293)
T ss_pred HHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHH--HHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555554443322 2233333333221 12222 3333334445555555554444444444
Q ss_pred HHHHHHHHHHHHHHHHh----chhhhhhhHHHHHHHHHHHHHhhhHHHHH-------hhhhhhhhhhhhhhhhccccCCC
Q 009074 191 VEKLTQTVRELEEAVLA----GGAAANAVRDYQRKVQEMNEERKTLDREL-------ARAKVTANRVATVVANEWKDAND 259 (544)
Q Consensus 191 VEKLtqTv~ELEEAvLa----ggaaaNAvrdyqrq~~elneEkrtLerEL-------ARaKv~AnRVA~vVAnEWKDend 259 (544)
...+++-+.+||--+.. -+.+-|+.-.|++.+++++.|...|+..+ .-.+...-+=+-..-++-.+-.+
T Consensus 407 lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~ek 486 (1293)
T KOG0996|consen 407 LKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELDEILDSLKQETEGIREEIEKLEK 486 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence 45555555555444443 37777888888888887777766655443 33333322222223333333334
Q ss_pred CccchhhHHHHhhhhHHHHHHHHHHHHHh
Q 009074 260 KVMPVKQWLEERRFLQGEMQQLRDRLAIT 288 (544)
Q Consensus 260 kVmPVKqWLEErR~LQGEmqrLrdKLAia 288 (544)
..|| |++..--.-||+|-....|-+.
T Consensus 487 el~~---~~~~~n~~~~e~~vaesel~~L 512 (1293)
T KOG0996|consen 487 ELMP---LLKQVNEARSELDVAESELDIL 512 (1293)
T ss_pred HHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 4454 6666555666666655555544
No 47
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=89.71 E-value=15 Score=32.95 Aligned_cols=111 Identities=23% Similarity=0.281 Sum_probs=80.7
Q ss_pred hhhhhHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhc----hhhhhhhHHHHHHHHHHHHHhhhHHH
Q 009074 159 LQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEAVLAG----GAAANAVRDYQRKVQEMNEERKTLDR 234 (544)
Q Consensus 159 lQN~N~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLtqTv~ELEEAvLag----gaaaNAvrdyqrq~~elneEkrtLer 234 (544)
+=|=..+|..+.+.-.+-+.-|..-.+....+++.|+..+..|++-+-.. +.+-+..+.-+.++..+..-.+.+..
T Consensus 36 vin~i~~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~ke 115 (151)
T PF11559_consen 36 VINCIYDLLQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKE 115 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44666778888888888888888888888888888888888877766553 44445566667777777778888888
Q ss_pred HHhhhhhhhhhhhhhhhhccccCCCCccchhhHHHHhhhhHHHHHHHHHHHH
Q 009074 235 ELARAKVTANRVATVVANEWKDANDKVMPVKQWLEERRFLQGEMQQLRDRLA 286 (544)
Q Consensus 235 ELARaKv~AnRVA~vVAnEWKDendkVmPVKqWLEErR~LQGEmqrLrdKLA 286 (544)
|++|.+..+..+.+-. --|.|=-.-||++|+++|.
T Consensus 116 e~~klk~~~~~~~tq~-----------------~~e~rkke~E~~kLk~rL~ 150 (151)
T PF11559_consen 116 ELQKLKNQLQQRKTQY-----------------EHELRKKEREIEKLKERLN 150 (151)
T ss_pred HHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHhc
Confidence 8888887776655533 3344446678888888764
No 48
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=89.15 E-value=31 Score=36.00 Aligned_cols=35 Identities=17% Similarity=0.340 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHHHHhhhHHHHHhhhhhhhhhhhhh
Q 009074 215 VRDYQRKVQEMNEERKTLDRELARAKVTANRVATV 249 (544)
Q Consensus 215 vrdyqrq~~elneEkrtLerELARaKv~AnRVA~v 249 (544)
+...+.++.++..+....+..|.+..+.|--=.+|
T Consensus 293 l~~~~~~l~~~~~~l~~a~~~l~~~~I~AP~dG~V 327 (457)
T TIGR01000 293 ITDLNQKLLELESKIKSLKEDSQKGVIKAPEDGVL 327 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCEEECCCCeEE
Confidence 55556677777777777777777777776543333
No 49
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=88.84 E-value=37 Score=36.44 Aligned_cols=37 Identities=27% Similarity=0.380 Sum_probs=28.5
Q ss_pred HHHHHHHHhHhhhhhHHHHHHHHHhHHHHHhHHHHHh
Q 009074 466 DAIEILAKKVDTLTKAMEVEAKKMRREVAAMEKEVAA 502 (544)
Q Consensus 466 daIeML~KKVdtLtKAmEVEaKKmrREvaa~EKEvaa 502 (544)
.=++-|-.-|..+|...--|.--+|.|.|-||--|+-
T Consensus 258 ~R~erLEeqlNd~~elHq~Ei~~LKqeLa~~EEK~~Y 294 (395)
T PF10267_consen 258 YRYERLEEQLNDLTELHQNEIYNLKQELASMEEKMAY 294 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3455667778888888888889999999999865543
No 50
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=88.71 E-value=0.13 Score=56.28 Aligned_cols=99 Identities=20% Similarity=0.288 Sum_probs=0.0
Q ss_pred HHhhhccHHHHHHHHHHHHHhhhchHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHhHHH
Q 009074 101 EAILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKIL 180 (544)
Q Consensus 101 eaiiApLeaelk~~r~Ei~kLqddnkaLerltksKEaALleAeR~v~~AlakA~~V~dlQN~N~EL~kQiEIcqEEnkiL 180 (544)
..-+..|+..+..+..++..|+.+...+...+..-...+.+++..++.--....-+.+....+.+|..++.-+...- .+
T Consensus 170 ~~~~~~l~~~~~~~e~~~~~l~~e~~~l~~~le~~~~~~~e~e~~~~~L~~~q~~~~e~e~~i~~Le~el~~~~~~~-~i 248 (722)
T PF05557_consen 170 KNELSELERQAENAESQIQSLESELEELKEQLEELQSELQEAEQQLQELQASQASLAEAEQKIKELEAELKDQESDA-EI 248 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHhhHH-HH
Confidence 33444455444455555555555555555555555555566665555544443445556666666666655554432 22
Q ss_pred HHHhhhHHHHHHHHHHHHHH
Q 009074 181 DKMHRQKVAEVEKLTQTVRE 200 (544)
Q Consensus 181 dk~hRQKvaEVEKLtqTv~E 200 (544)
.|.....+..|-.|..+..+
T Consensus 249 ~k~l~~ql~~i~~LE~en~~ 268 (722)
T PF05557_consen 249 NKELKEQLAHIRELEKENRR 268 (722)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444333
No 51
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=88.66 E-value=47 Score=37.48 Aligned_cols=161 Identities=19% Similarity=0.269 Sum_probs=72.0
Q ss_pred hhhccHHHHHHHHHHHHHhhhchHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHhHHHHH
Q 009074 103 ILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKILDK 182 (544)
Q Consensus 103 iiApLeaelk~~r~Ei~kLqddnkaLerltksKEaALleAeR~v~~AlakA~~V~dlQN~N~EL~kQiEIcqEEnkiLdk 182 (544)
..+.|+.|+..|+.-...+..-+..++-.+.-.-..+.+ +=+=++-||-+|.+|++||+-- .|.-.
T Consensus 267 ~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~----------kEeE~e~lq~~~d~Lk~~Ie~Q----~iS~~ 332 (581)
T KOG0995|consen 267 KKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEE----------KEEEIEKLQKENDELKKQIELQ----GISGE 332 (581)
T ss_pred HHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHhc----CCCHH
Confidence 445555566666555555555555554444332222221 2233556788888888888742 11111
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHh-chhhhhhhHHHHHHHHHHHHHhhhHH---HHHh--hhhhhhh--hhhhhhhhcc
Q 009074 183 MHRQKVAEVEKLTQTVRELEEAVLA-GGAAANAVRDYQRKVQEMNEERKTLD---RELA--RAKVTAN--RVATVVANEW 254 (544)
Q Consensus 183 ~hRQKvaEVEKLtqTv~ELEEAvLa-ggaaaNAvrdyqrq~~elneEkrtLe---rELA--RaKv~An--RVA~vVAnEW 254 (544)
=-++-.+|-++|++++.++.-.+-+ .--+-+-=.-|+..+.++..-..-++ +.|. -+.-.+| |+..-+++.-
T Consensus 333 dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~~~~f~~le~~~~~~~~l~~~i~l~~~~~~~n~~~~pe~~~~~~ 412 (581)
T KOG0995|consen 333 DVERMNLERNKLKRELNKIQSELDRLSKEVWELKLEIEDFFKELEKKFIDLNSLIRRIKLGIAENSKNLERNPERAATNG 412 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCccCcccc
Confidence 1111122223333333222221111 00001111122333333322222222 2221 2455677 7777788888
Q ss_pred ccCCCCccc-hhhHHHHhhhhHHHHHH
Q 009074 255 KDANDKVMP-VKQWLEERRFLQGEMQQ 280 (544)
Q Consensus 255 KDendkVmP-VKqWLEErR~LQGEmqr 280 (544)
-|-++.|.| .+-|+-+ .++++-.
T Consensus 413 ~d~k~~V~~~l~el~~e---i~~~~~~ 436 (581)
T KOG0995|consen 413 VDLKSYVKPLLKELLDE---ISEELHE 436 (581)
T ss_pred ccchhHhHHHHHHHHHH---HHHHHHH
Confidence 888888875 4555543 4444433
No 52
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=88.33 E-value=11 Score=42.87 Aligned_cols=70 Identities=34% Similarity=0.498 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHhhhHHHHHhhhhhhhhhhhhhhhhccccCCCCccchhhHHHHhhhhHHHHHHHHHHHHHhHHhhhHHHH
Q 009074 218 YQRKVQEMNEERKTLDRELARAKVTANRVATVVANEWKDANDKVMPVKQWLEERRFLQGEMQQLRDRLAITERTAKSEAQ 297 (544)
Q Consensus 218 yqrq~~elneEkrtLerELARaKv~AnRVA~vVAnEWKDendkVmPVKqWLEErR~LQGEmqrLrdKLAiaERtAkaEaQ 297 (544)
.+.|+.+|.||.+++.-|+--|+- +.+|..|--||.-| .+||-.-||+|.-= ||
T Consensus 355 lee~i~elEEElk~~k~ea~~ar~-----------~~~~~e~ddiPmAq---RkRFTRvEMaRVLM-----eR------- 408 (832)
T KOG2077|consen 355 LEEKIRELEEELKKAKAEAEDARQ-----------KAKDDEDDDIPMAQ---RKRFTRVEMARVLM-----ER------- 408 (832)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----------hhcccccccccHHH---HhhhHHHHHHHHHH-----HH-------
Confidence 455555555555555444433322 23444444468777 68999999998532 22
Q ss_pred HHHHHHHHHHHHHHhhcC
Q 009074 298 LKEKYHLRLKVLEESLRG 315 (544)
Q Consensus 298 LKeK~~lRLk~LEe~lk~ 315 (544)
..|+-||-.|+|.+|-
T Consensus 409 --NqYKErLMELqEavrW 424 (832)
T KOG2077|consen 409 --NQYKERLMELQEAVRW 424 (832)
T ss_pred --hHHHHHHHHHHHHHhH
Confidence 3477788888887763
No 53
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=87.72 E-value=30 Score=34.14 Aligned_cols=30 Identities=23% Similarity=0.265 Sum_probs=18.8
Q ss_pred hHHHHHHHHHHHHHhhhHHHHHhhhhhhhh
Q 009074 215 VRDYQRKVQEMNEERKTLDRELARAKVTAN 244 (544)
Q Consensus 215 vrdyqrq~~elneEkrtLerELARaKv~An 244 (544)
+-+.++++.++..+...++.+|+.++.-.+
T Consensus 198 ~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~ 227 (423)
T TIGR01843 198 LLELERERAEAQGELGRLEAELEVLKRQID 227 (423)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 445566666666666667777766655444
No 54
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=87.25 E-value=34 Score=34.63 Aligned_cols=44 Identities=32% Similarity=0.517 Sum_probs=19.8
Q ss_pred HHhhhhhHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 009074 157 DDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEE 203 (544)
Q Consensus 157 ~dlQN~N~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLtqTv~ELEE 203 (544)
+++.++.+++..+|. +-.++++...---..||.+|...+.-||.
T Consensus 247 ~~~~~~k~~l~~eI~---e~~~~~~~~r~~t~~Ev~~Lk~~~~~Le~ 290 (325)
T PF08317_consen 247 EELEEQKQELLAEIA---EAEKIREECRGWTRSEVKRLKAKVDALEK 290 (325)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 334444444444443 22233333333345566666666655553
No 55
>PF05852 DUF848: Gammaherpesvirus protein of unknown function (DUF848); InterPro: IPR008566 This family consists of several uncharacterised proteins from the Gammaherpesvirinae.
Probab=87.16 E-value=2 Score=40.48 Aligned_cols=52 Identities=35% Similarity=0.416 Sum_probs=47.0
Q ss_pred hHHhhhhhHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh
Q 009074 156 VDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEAVLA 207 (544)
Q Consensus 156 V~dlQN~N~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLtqTv~ELEEAvLa 207 (544)
-.+++|....+...|+.|+-|--+|-..++-||..+|+|+-.|.||.|-|-.
T Consensus 56 ~~~~~~~v~~~~~~i~~k~~El~~L~~~d~~kv~~~E~L~d~v~eLkeel~~ 107 (146)
T PF05852_consen 56 ECEIKNKVSSLETEISEKKKELSHLKKFDRKKVEDLEKLTDRVEELKEELEF 107 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578888999999999999999999999999999999999999999876643
No 56
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=86.96 E-value=42 Score=40.25 Aligned_cols=185 Identities=23% Similarity=0.289 Sum_probs=118.9
Q ss_pred hhhhhhhhhccccchhccCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHhHHHHHHHHHHHHHHhhhccC
Q 009074 15 AMSKITILCSMGADFALNLPVFPKLTEELSKVEEKLKLAENLIETKNLEIKKINDEKRASMAAQFAAEATLRRVHAAQKD 94 (544)
Q Consensus 15 A~sei~~lkv~~~~e~lKdKaveEl~~El~K~dEKLk~tE~lle~kNLEiKklndEKK~alAAQfAAEAtLRRvha~QKd 94 (544)
.+.||.-|+----...++---++++-.|+.+..+.+...|..++....++..+..|+. -+-++||+.-- +.|.
T Consensus 715 ~~~em~el~n~~e~~~~~~~~~~~l~~ei~~~~~eIe~~~~~~e~l~~e~e~~~~e~~-e~~~~~~~~~~-----~l~~- 787 (1074)
T KOG0250|consen 715 KRAEMTELKNTAEEKQVDISKLEDLAREIKKKEKEIEEKEAPLEKLKEELEHIELEAQ-ELEEYYAAGRE-----KLQG- 787 (1074)
T ss_pred HHHHHHHHhhhhhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH-----HHHH-
Confidence 3445555554101122333456778888888888888888889988899999999888 67788887643 2222
Q ss_pred CCCChhHHhhhccHHHHHHHHHHHHHhhhc-------hHHHHHHhhhHHHHHHHHHHHHHHHHHHhhh------------
Q 009074 95 DDMPPIEAILAPLEAELKLARQEIAKLQDD-------NKALDRLTKSKEAALLEAERTVQVALAKASM------------ 155 (544)
Q Consensus 95 ddmppieaiiApLeaelk~~r~Ei~kLqdd-------nkaLerltksKEaALleAeR~v~~AlakA~~------------ 155 (544)
.-.-+.||+.||+..-..+..-.|+ .|...--++.+|+.+...+..++....+|.+
T Consensus 788 -----e~~~l~~l~~el~~r~dk~~s~e~~~~HyE~~~K~~l~~l~~~E~~~~~~e~~~~e~~~ka~~~cp~~~~ei~~~ 862 (1074)
T KOG0250|consen 788 -----EISKLDALKEELKLREDKLRSAEDEKRHYEDKLKSRLEELKQKEVEKVNLEEPRAEEDQKARTECPEEGIEIEAL 862 (1074)
T ss_pred -----HHHHhhHHHHHHHHHHHHHhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhhhcchhhhCchhhhhCccccchhhcc
Confidence 1223456666666544444432222 2323444668888899889899988888865
Q ss_pred ---hHHhhhhhHHHHHHHHHHHHHhHHHHHHhhhHHH--H-HHHHHHHHHHHHHHHHhchhh
Q 009074 156 ---VDDLQNKNQELMKQIEICQEENKILDKMHRQKVA--E-VEKLTQTVRELEEAVLAGGAA 211 (544)
Q Consensus 156 ---V~dlQN~N~EL~kQiEIcqEEnkiLdk~hRQKva--E-VEKLtqTv~ELEEAvLaggaa 211 (544)
++++-+.+.-|++||+-|.+=.--+.-+|++-.. . ..|.+.-..=|-|.|-+-|-+
T Consensus 863 ~~~~~eik~ei~rlk~~i~~~ee~~~~~~e~~~~~~~~~~~~~k~~~~k~~~~e~L~~l~~~ 924 (1074)
T KOG0250|consen 863 GKTVAEIKREIKRLKRQIQMCEESLGELEELHRGLHEARKELKKEDELKVTLDELLKALGEA 924 (1074)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 3678888899999999998888888888887332 2 222222222256666555543
No 57
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=86.94 E-value=26 Score=35.36 Aligned_cols=67 Identities=19% Similarity=0.259 Sum_probs=51.3
Q ss_pred HHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHHHhhhHHHHHhhhh
Q 009074 173 CQEENKILDKMHRQKVAEVEKLTQTVRELEEAVLAGGAAANAVRDYQRKVQEMNEERKTLDRELARAK 240 (544)
Q Consensus 173 cqEEnkiLdk~hRQKvaEVEKLtqTv~ELEEAvLaggaaaNAvrdyqrq~~elneEkrtLerELARaK 240 (544)
.+.|-.=|+.--+|=-.||-++..-+..+|+.+ +++...+..++|++.++.+++...+|+.||+++-
T Consensus 50 ~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl-~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~ 116 (239)
T COG1579 50 LEIELEDLENQVSQLESEIQEIRERIKRAEEKL-SAVKDERELRALNIEIQIAKERINSLEDELAELM 116 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444555567778888888889888 7777778899999999999999999999997653
No 58
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=86.40 E-value=71 Score=37.03 Aligned_cols=220 Identities=22% Similarity=0.281 Sum_probs=109.6
Q ss_pred HHHHHhhhhhhhhhhccccchhccCCchhh-hHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHhHHHHHHHHHHHHH
Q 009074 9 LCSLFFAMSKITILCSMGADFALNLPVFPK-LTEELSKVEEKLKLAENLIETKNLEIKKINDEKRASMAAQFAAEATLRR 87 (544)
Q Consensus 9 ~~~l~~A~sei~~lkv~~~~e~lKdKaveE-l~~El~K~dEKLk~tE~lle~kNLEiKklndEKK~alAAQfAAEAtLRR 87 (544)
...||.++++|+++-+ .+.-+++++.+ ..-++..+.+-|..+-...+..-.+|-.|.+|= =+...++|
T Consensus 23 ~~~l~~~~~~i~~fws---pElkrer~~rkee~a~l~~~k~qlr~~q~e~q~~~~ei~~LqeEL--------r~q~e~~r 91 (775)
T PF10174_consen 23 QSKLGSSMNSIKTFWS---PELKRERALRKEEAAELSRLKEQLRVTQEENQKAQEEIQALQEEL--------RAQRELNR 91 (775)
T ss_pred HhHHHHHHHhHhcccc---hhhHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHH--------HHhhHHHH
Confidence 4568899999999777 77778888766 455566666666665555555445554444443 34445555
Q ss_pred Hhhh----ccCCCCChh----HHhhhccHHHHHHHHHHHHHhhhchHHHHHHh----hhHHHHHHHHHHHHHHHHH----
Q 009074 88 VHAA----QKDDDMPPI----EAILAPLEAELKLARQEIAKLQDDNKALDRLT----KSKEAALLEAERTVQVALA---- 151 (544)
Q Consensus 88 vha~----QKdddmppi----eaiiApLeaelk~~r~Ei~kLqddnkaLerlt----ksKEaALleAeR~v~~Ala---- 151 (544)
.+.- +-+.+.++. ..-+.-|.+|...+..|+..|++....++.-+ ..-+++--+.++ +..+|.
T Consensus 92 L~~~~e~~~~e~e~l~~ld~~~~q~~rl~~E~er~~~El~~lr~~lE~~q~~~e~~q~~l~~~~eei~k-L~e~L~~~g~ 170 (775)
T PF10174_consen 92 LQQELEKAQYEFESLQELDKAQEQFERLQAERERLQRELERLRKTLEELQLRIETQQQTLDKADEEIEK-LQEMLQSKGL 170 (775)
T ss_pred HHHHhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhcCC
Confidence 4432 333332222 23445555555555555555554444333222 112222112211 112110
Q ss_pred ----------HhhhhHHhhhhhHHHHHHHHHHHHHh--------------------HHHHHHhhhHHHHHHHHHHHHHHH
Q 009074 152 ----------KASMVDDLQNKNQELMKQIEICQEEN--------------------KILDKMHRQKVAEVEKLTQTVREL 201 (544)
Q Consensus 152 ----------kA~~V~dlQN~N~EL~kQiEIcqEEn--------------------kiLdk~hRQKvaEVEKLtqTv~EL 201 (544)
...-+.|..+....|.-.+++.-.+. ..|.++...|...|--|--.++.|
T Consensus 171 ~~~~~~~~~~~~~~~~~~e~~~~~le~lle~~e~~~~~~r~~l~~~~~~~~~~a~t~alq~~ie~Kd~ki~~lEr~l~~l 250 (775)
T PF10174_consen 171 SAEAEEEDNEALRRIREAEARIMRLESLLERKEKEHMEAREQLHRRLQMERDDAETEALQTVIEEKDTKIASLERMLRDL 250 (775)
T ss_pred cccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01122333333333333333332222 245556666666666666677777
Q ss_pred HHHHHh---chhhhhhhHH--------HHHHHHHHHHHhhhHHHHHhhhh
Q 009074 202 EEAVLA---GGAAANAVRD--------YQRKVQEMNEERKTLDRELARAK 240 (544)
Q Consensus 202 EEAvLa---ggaaaNAvrd--------yqrq~~elneEkrtLerELARaK 240 (544)
|.=|.. -|+.+++=|| |++..-.|....-.+.-||.|.+
T Consensus 251 e~Ei~~L~~~~~~~~~~r~~~~k~le~~~s~~~~mK~k~d~~~~eL~rk~ 300 (775)
T PF10174_consen 251 EDEIYRLRSRGELSEADRDRLDKQLEVYKSHSLAMKSKMDRLKLELSRKK 300 (775)
T ss_pred HHHHHHHHhcccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 766654 3788887444 34444444444444555555544
No 59
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=86.13 E-value=55 Score=35.50 Aligned_cols=83 Identities=18% Similarity=0.281 Sum_probs=49.7
Q ss_pred CCCChhHHhhhccHHHHHHHHHHHHHhhhchHHHHHHhhhHHHHHHHHHHHHHH----HHHHhhhhHHhhhhhHHHHHHH
Q 009074 95 DDMPPIEAILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQV----ALAKASMVDDLQNKNQELMKQI 170 (544)
Q Consensus 95 ddmppieaiiApLeaelk~~r~Ei~kLqddnkaLerltksKEaALleAeR~v~~----AlakA~~V~dlQN~N~EL~kQi 170 (544)
+.+..+...|+.+..||..++..+.+..++...|-....+=...|.....-+.. .-...+.|..|+-+...+..+|
T Consensus 274 ~~~~~~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eL 353 (522)
T PF05701_consen 274 EKSSELQSSLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSEL 353 (522)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHH
Confidence 445556666777888888888777777777766666555544444333322222 2223334566666666777777
Q ss_pred HHHHHHh
Q 009074 171 EICQEEN 177 (544)
Q Consensus 171 EIcqEEn 177 (544)
+.++.+.
T Consensus 354 ea~~~~e 360 (522)
T PF05701_consen 354 EAAKAEE 360 (522)
T ss_pred HHHHhhh
Confidence 7766554
No 60
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=86.04 E-value=28 Score=32.02 Aligned_cols=114 Identities=28% Similarity=0.400 Sum_probs=78.3
Q ss_pred hHHhhhccHHHHHHHHHHHHHhhhchHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHhHH
Q 009074 100 IEAILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKI 179 (544)
Q Consensus 100 ieaiiApLeaelk~~r~Ei~kLqddnkaLerltksKEaALleAeR~v~~AlakA~~V~dlQN~N~EL~kQiEIcqEEnki 179 (544)
+++.+.-||.+....-+||..||--+..|+.-+-.=+..|.++...+.......+-++-|+.+++-|-.+++-..
T Consensus 19 ~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae----- 93 (143)
T PF12718_consen 19 LEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAE----- 93 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHH-----
Confidence 355666777777777788888888888887777777777777777777776666666767777766666655443
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHHHhhhHHHHHh
Q 009074 180 LDKMHRQKVAEVEKLTQTVRELEEAVLAGGAAANAVRDYQRKVQEMNEERKTLDRELA 237 (544)
Q Consensus 180 Ldk~hRQKvaEVEKLtqTv~ELEEAvLaggaaaNAvrdyqrq~~elneEkrtLerELA 237 (544)
.+|..|...|+++=.. .-.|.|++..|..+.-.|+.-+.
T Consensus 94 ------------~~L~e~~ekl~e~d~~-------ae~~eRkv~~le~~~~~~E~k~e 132 (143)
T PF12718_consen 94 ------------KKLKETTEKLREADVK-------AEHFERKVKALEQERDQWEEKYE 132 (143)
T ss_pred ------------HHHHHHHHHHHHHHHH-------hHHHHHHHHHHHhhHHHHHHHHH
Confidence 2445555556655433 34678888888888888776553
No 61
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=86.02 E-value=15 Score=39.38 Aligned_cols=81 Identities=28% Similarity=0.368 Sum_probs=54.7
Q ss_pred HhhhhHHhhhhhHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHHHhhh
Q 009074 152 KASMVDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEAVLAGGAAANAVRDYQRKVQEMNEERKT 231 (544)
Q Consensus 152 kA~~V~dlQN~N~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLtqTv~ELEEAvLaggaaaNAvrdyqrq~~elneEkrt 231 (544)
+-.=-+.||-+|+.|+-|+=-.++ ++-|+- .+..+|..+|+.++|-=.---. -+.+|++++-|+.||-.+
T Consensus 97 ~q~e~~qL~~qnqkL~nqL~~~~~---vf~k~k----~~~q~LE~li~~~~EEn~~lql---qL~~l~~e~~Ekeeesq~ 166 (401)
T PF06785_consen 97 RQQESEQLQSQNQKLKNQLFHVRE---VFMKTK----GDIQHLEGLIRHLREENQCLQL---QLDALQQECGEKEEESQT 166 (401)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHH---HHHHhc----chHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHhHhHHHHHH
Confidence 333346789999999999877776 444442 3444555556655543111011 177899999999999999
Q ss_pred HHHHHhhhhhh
Q 009074 232 LDRELARAKVT 242 (544)
Q Consensus 232 LerELARaKv~ 242 (544)
|.|||+-+-.+
T Consensus 167 LnrELaE~lay 177 (401)
T PF06785_consen 167 LNRELAEALAY 177 (401)
T ss_pred HHHHHHHHHHH
Confidence 99999877644
No 62
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=85.61 E-value=51 Score=34.63 Aligned_cols=155 Identities=22% Similarity=0.316 Sum_probs=92.2
Q ss_pred HhhhccCCCCChhHH-------------hhhccHHHHHHHHHHHHHhhhchHHHHHHhhhHHHHHHHHHHHHHHHHHHhh
Q 009074 88 VHAAQKDDDMPPIEA-------------ILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKAS 154 (544)
Q Consensus 88 vha~QKdddmppiea-------------iiApLeaelk~~r~Ei~kLqddnkaLerltksKEaALleAeR~v~~AlakA~ 154 (544)
+-+...|.++||... -.--|..|++..|+.+..+|.|++.|---+..-..-..+.+
T Consensus 52 ~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~----------- 120 (319)
T PF09789_consen 52 EAAGFGDPSIPPEKENKNLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIG----------- 120 (319)
T ss_pred hhcccCCccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhcccc-----------
Confidence 335567788888532 23457888888999999999999887543222111111000
Q ss_pred hhHHhhhhhHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHHHhhhHHH
Q 009074 155 MVDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEAVLAGGAAANAVRDYQRKVQEMNEERKTLDR 234 (544)
Q Consensus 155 ~V~dlQN~N~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLtqTv~ELEEAvLaggaaaNAvrdyqrq~~elneEkrtLer 234 (544)
...+. ..-..|-.|+|-.++.+.-|+. -+...+.|.||.+--. -.|+.|++.||.|..-+
T Consensus 121 ~~~~~-~ere~lV~qLEk~~~q~~qLe~----------d~qs~lDEkeEl~~ER-------D~yk~K~~RLN~ELn~~-- 180 (319)
T PF09789_consen 121 ARHFP-HEREDLVEQLEKLREQIEQLER----------DLQSLLDEKEELVTER-------DAYKCKAHRLNHELNYI-- 180 (319)
T ss_pred ccccc-hHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH--
Confidence 00000 1223344444444444444432 2334455555554321 23788999998876321
Q ss_pred HHhhhhhhhhhhhhhhhhccccCCCCccchhhHHHHhhhhHHHHHHHHHHHHHhHHhh
Q 009074 235 ELARAKVTANRVATVVANEWKDANDKVMPVKQWLEERRFLQGEMQQLRDRLAITERTA 292 (544)
Q Consensus 235 ELARaKv~AnRVA~vVAnEWKDendkVmPVKqWLEErR~LQGEmqrLrdKLAiaERtA 292 (544)
-|+ | .-+++.|.--+.|=|||+..+.++......+-.+.
T Consensus 181 ----------------L~g--~-~~rivDIDaLi~ENRyL~erl~q~qeE~~l~k~~i 219 (319)
T PF09789_consen 181 ----------------LNG--D-ENRIVDIDALIMENRYLKERLKQLQEEKELLKQTI 219 (319)
T ss_pred ----------------hCC--C-CCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122 2 22777899999999999999999999988876665
No 63
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=85.30 E-value=69 Score=35.90 Aligned_cols=88 Identities=20% Similarity=0.312 Sum_probs=56.7
Q ss_pred hhhhHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHH--HHHHhchhhhhhhHHHHHHHHHHHHHhhhHHHHHh
Q 009074 160 QNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELE--EAVLAGGAAANAVRDYQRKVQEMNEERKTLDRELA 237 (544)
Q Consensus 160 QN~N~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLtqTv~ELE--EAvLaggaaaNAvrdyqrq~~elneEkrtLerELA 237 (544)
....+++..+|+...+|.+.-+..|.|-+.|++++.+.+.--- .-| ---..-||-=+..|...-.+-+.|..|+-
T Consensus 446 ~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~~~Rs~Yt~RI---lEIv~NI~KQk~eI~KIl~DTr~lQkeiN 522 (594)
T PF05667_consen 446 LQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKDVNRSAYTRRI---LEIVKNIRKQKEEIEKILSDTRELQKEIN 522 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHH---HHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677778888888888888888888888888876543100 000 00112244445556666677778888887
Q ss_pred hhhhhhhhhhhhh
Q 009074 238 RAKVTANRVATVV 250 (544)
Q Consensus 238 RaKv~AnRVA~vV 250 (544)
-..-...|.-+|+
T Consensus 523 ~l~gkL~RtF~v~ 535 (594)
T PF05667_consen 523 SLTGKLDRTFTVT 535 (594)
T ss_pred HHHHHHHhHHHHH
Confidence 7777777776663
No 64
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=83.51 E-value=35 Score=31.07 Aligned_cols=100 Identities=23% Similarity=0.322 Sum_probs=66.3
Q ss_pred ChhHHhhhccHHHHHHHHHHHHHhhhchHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHh
Q 009074 98 PPIEAILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEEN 177 (544)
Q Consensus 98 ppieaiiApLeaelk~~r~Ei~kLqddnkaLerltksKEaALleAeR~v~~AlakA~~V~dlQN~N~EL~kQiEIcqEEn 177 (544)
.|--.++--|.+.|+....|++.|++.+..|. ..|+.+-.|.=+-+....+. .....++.+|..+++..+...
T Consensus 12 ~~~~~~ve~L~s~lr~~E~E~~~l~~el~~l~---~~r~~l~~Eiv~l~~~~e~~----~~~~~~~~~L~~el~~l~~ry 84 (120)
T PF12325_consen 12 GPSVQLVERLQSQLRRLEGELASLQEELARLE---AERDELREEIVKLMEENEEL----RALKKEVEELEQELEELQQRY 84 (120)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 34445677788888888888888887765544 44444433333333322222 333344556777777777777
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 009074 178 KILDKMHRQKVAEVEKLTQTVRELEEA 204 (544)
Q Consensus 178 kiLdk~hRQKvaEVEKLtqTv~ELEEA 204 (544)
..+=-|.=.|.-+|+.|..-|..+-+-
T Consensus 85 ~t~LellGEK~E~veEL~~Dv~DlK~m 111 (120)
T PF12325_consen 85 QTLLELLGEKSEEVEELRADVQDLKEM 111 (120)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 778888899999999999999887653
No 65
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.26 E-value=42 Score=37.25 Aligned_cols=123 Identities=24% Similarity=0.258 Sum_probs=80.0
Q ss_pred hhHHhhhhhHHHHHHHHHHHHHh--HHHHHHhhhHHHHHHHHH-HHHHHHHHHHHhchhhhhh-hHHHHHHHHHHHHHhh
Q 009074 155 MVDDLQNKNQELMKQIEICQEEN--KILDKMHRQKVAEVEKLT-QTVRELEEAVLAGGAAANA-VRDYQRKVQEMNEERK 230 (544)
Q Consensus 155 ~V~dlQN~N~EL~kQiEIcqEEn--kiLdk~hRQKvaEVEKLt-qTv~ELEEAvLaggaaaNA-vrdyqrq~~elneEkr 230 (544)
.+..++.+..+|.+|+|-+.--+ +.+-=-.-+++.|++--. +.|+|||-.++|..--+|- +--| ..|..|..
T Consensus 301 ~l~~~~~~~~~ltqqwed~R~pll~kkl~Lr~~l~~~e~e~~e~~~IqeleqdL~a~~eei~~~eel~----~~Lrsele 376 (521)
T KOG1937|consen 301 KLAELNKQMEELTQQWEDTRQPLLQKKLQLREELKNLETEDEEIRRIQELEQDLEAVDEEIESNEELA----EKLRSELE 376 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhHHHH----HHHHHHHh
Confidence 45677888888999988764322 111112234566666555 7888888888875444332 1111 12333334
Q ss_pred hHHHHHhhhhhhhhhhhhhhhhccccCCCCccchhhHHHHhhhhHHHHHHHHHHHH
Q 009074 231 TLDRELARAKVTANRVATVVANEWKDANDKVMPVKQWLEERRFLQGEMQQLRDRLA 286 (544)
Q Consensus 231 tLerELARaKv~AnRVA~vVAnEWKDendkVmPVKqWLEErR~LQGEmqrLrdKLA 286 (544)
+|.+-.- -|++..|+--.++|--|-+.| +..-++|+|-||-|...+..+|.
T Consensus 377 ~lp~dv~-rk~ytqrikEi~gniRKq~~D----I~Kil~etreLqkq~ns~se~L~ 427 (521)
T KOG1937|consen 377 KLPDDVQ-RKVYTQRIKEIDGNIRKQEQD----IVKILEETRELQKQENSESEALN 427 (521)
T ss_pred cCCchhH-HHHHHHHHHHHHhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444433 589999999999999998855 34789999999999988877764
No 66
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=83.03 E-value=57 Score=36.68 Aligned_cols=134 Identities=20% Similarity=0.277 Sum_probs=74.1
Q ss_pred cCCCCChhHHhhhccHHHHHHHHHHHHHhhhchHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHH
Q 009074 93 KDDDMPPIEAILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEI 172 (544)
Q Consensus 93 KdddmppieaiiApLeaelk~~r~Ei~kLqddnkaLerltksKEaALleAeR~v~~AlakA~~V~dlQN~N~EL~kQiEI 172 (544)
-|++.||-...=+-++.-....-.+|+.|+..|+-|+-.+++-+. +.++-.+++ ..+..|-+| .|+-+--+++|+-
T Consensus 248 ~~~~~~~e~Elk~~f~~~~~~i~~~i~~lk~~n~~l~e~i~ea~k-~s~~i~~l~--ek~r~l~~D-~nk~~~~~~~mk~ 323 (622)
T COG5185 248 EDNYEPSEQELKLGFEKFVHIINTDIANLKTQNDNLYEKIQEAMK-ISQKIKTLR--EKWRALKSD-SNKYENYVNAMKQ 323 (622)
T ss_pred CCccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH--HHHHHHhhh-HHHHHHHHHHHHH
Confidence 456677766666666666666667999999999988876654321 111111111 112222222 3555555555554
Q ss_pred HHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhchhhhhhhHHH-------HHHHHHHHHHhhhHHHHHhhhh
Q 009074 173 CQEENKILDKMHRQKVAEVEKLTQTVRELEEAVLAGGAAANAVRDY-------QRKVQEMNEERKTLDRELARAK 240 (544)
Q Consensus 173 cqEEnkiLdk~hRQKvaEVEKLtqTv~ELEEAvLaggaaaNAvrdy-------qrq~~elneEkrtLerELARaK 240 (544)
-.++. .--+++|+-.|.+-||-|.+--+---.+|-- -.+|.+||.|+-.|.|||-+-+
T Consensus 324 K~~~~----------~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~reL~~i~ 388 (622)
T COG5185 324 KSQEW----------PGKLEKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQEREKLTRELDKIN 388 (622)
T ss_pred HHHhc----------chHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 33321 2224455555555555555432222222211 3678999999999999996543
No 67
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=82.73 E-value=6 Score=39.16 Aligned_cols=96 Identities=21% Similarity=0.310 Sum_probs=67.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHHHhhhHHHHHhhhhhhhhhhhhhhhhccccCCCCccc
Q 009074 184 HRQKVAEVEKLTQTVRELEEAVLAGGAAANAVRDYQRKVQEMNEERKTLDRELARAKVTANRVATVVANEWKDANDKVMP 263 (544)
Q Consensus 184 hRQKvaEVEKLtqTv~ELEEAvLaggaaaNAvrdyqrq~~elneEkrtLerELARaKv~AnRVA~vVAnEWKDendkVmP 263 (544)
.|.|+.+.+|+...|..--+.+-.. ...+.+|.....+|+.|+.-...||.-...=-|-+=.++..-|-+-+.
T Consensus 6 ir~K~~~lek~k~~i~~e~~~~e~e---e~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~---- 78 (230)
T PF10146_consen 6 IRNKTLELEKLKNEILQEVESLENE---EKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNK---- 78 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 5899999999998887755554433 367999999999999999999999988887777665555444433211
Q ss_pred hhhHHHHhhhhHHHHHHHHHHHHHhH
Q 009074 264 VKQWLEERRFLQGEMQQLRDRLAITE 289 (544)
Q Consensus 264 VKqWLEErR~LQGEmqrLrdKLAiaE 289 (544)
-.+.=.-+++|...|+|.+...-
T Consensus 79 ---~~~~i~r~~eey~~Lk~~in~~R 101 (230)
T PF10146_consen 79 ---RQEKIQRLYEEYKPLKDEINELR 101 (230)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 11122225567777777665443
No 68
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=82.29 E-value=1.3e+02 Score=36.59 Aligned_cols=233 Identities=19% Similarity=0.278 Sum_probs=128.1
Q ss_pred chhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHhHHH----HHHHHHHHHHHhhhccCCCCChhHHhhhccHHH
Q 009074 35 VFPKLTEELSKVEEKLKLAENLIETKNLEIKKINDEKRASMAA----QFAAEATLRRVHAAQKDDDMPPIEAILAPLEAE 110 (544)
Q Consensus 35 aveEl~~El~K~dEKLk~tE~lle~kNLEiKklndEKK~alAA----QfAAEAtLRRvha~QKdddmppieaiiApLeae 110 (544)
-+++-.+-+.+++|.+..+-..+++.+-+||+|...|-+.|.- --++..+++++-+ +..-+..-+..-|.-.+..
T Consensus 252 ~i~e~~~~i~~l~e~~~k~~~ei~~le~~ikei~~~rd~em~~~~~~L~~~~~~~~~~~t-r~~t~l~~~~~tl~~e~~k 330 (1174)
T KOG0933|consen 252 EIEEMKDKIAKLDESLGKTDKEIESLEKEIKEIEQQRDAEMGGEVKALEDKLDSLQNEIT-REETSLNLKKETLNGEEEK 330 (1174)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhHHH
Confidence 3566777888899999999999999999999999988765532 2333444444332 1122222233333344444
Q ss_pred HHHHHHHHHHhhhc--------------hHHHHHHhhhHHHHHHHHHHH-HHHHH-----------------HHhhh---
Q 009074 111 LKLARQEIAKLQDD--------------NKALDRLTKSKEAALLEAERT-VQVAL-----------------AKASM--- 155 (544)
Q Consensus 111 lk~~r~Ei~kLqdd--------------nkaLerltksKEaALleAeR~-v~~Al-----------------akA~~--- 155 (544)
++..++.|..+... ...+-.- -++.+++++..+. +++.. ..|-+
T Consensus 331 ~e~i~~~i~e~~~~l~~k~~~~~~~~~~~~~~ke~-~~~~s~~~e~~e~~~eslt~G~Ss~~~~e~~l~~ql~~aK~~~~ 409 (1174)
T KOG0933|consen 331 LEEIRKNIEEDRKKLKEKEKAMAKVEEGYEKLKEA-FQEDSKLLEKAEELVESLTAGLSSNEDEEKTLEDQLRDAKITLS 409 (1174)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHhhhhhhHHHHHHH-HHHHHHHHHHHHHHHHHHhcccccCccchhhHHHHHHHHHHHHH
Confidence 44444443322111 1111000 0122222222221 21111 11100
Q ss_pred -----hHHhhhhhHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHHHhh
Q 009074 156 -----VDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEAVLAGGAAANAVRDYQRKVQEMNEERK 230 (544)
Q Consensus 156 -----V~dlQN~N~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLtqTv~ELEEAvLaggaaaNAvrdyqrq~~elneEkr 230 (544)
..-.+-+..-+.+||..-+-+-+..++=..+-+-++.-+.-+|.+|+-.+..-|---|...+.+.+-..|-+-..
T Consensus 410 ~~~t~~k~a~~k~e~~~~elk~~e~e~~t~~~~~~~~~~~ld~~q~eve~l~~~l~~l~~~~~~~e~l~q~~~~l~~~~~ 489 (1174)
T KOG0933|consen 410 EASTEIKQAKLKLEHLRKELKLREGELATASAEYVKDIEELDALQNEVEKLKKRLQSLGYKIGQEEALKQRRAKLHEDIG 489 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHH
Confidence 011122333344444444444555555556666666677777777777777778888887778777788888888
Q ss_pred hHHHHHhhhhhhhhhhhhhhhhccccCCCCccchhhHHHHhhhhHHHHHHH
Q 009074 231 TLDRELARAKVTANRVATVVANEWKDANDKVMPVKQWLEERRFLQGEMQQL 281 (544)
Q Consensus 231 tLerELARaKv~AnRVA~vVAnEWKDendkVmPVKqWLEErR~LQGEmqrL 281 (544)
.|.+++.|-+. |+|.. ..-+.| |++-|= |++..|=.-+|
T Consensus 490 ~lk~~~~~l~a---~~~~~-~f~Y~d------P~~nfd--rs~V~G~Va~L 528 (1174)
T KOG0933|consen 490 RLKDELDRLLA---RLANY-EFTYQD------PEPNFD--RSKVKGLVAKL 528 (1174)
T ss_pred HHHHHHHHHHh---hhccc-ccccCC------CCccch--HHHHHHHHHHH
Confidence 88888877664 33333 334454 566774 88877755544
No 69
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=82.25 E-value=10 Score=37.51 Aligned_cols=152 Identities=23% Similarity=0.403 Sum_probs=77.0
Q ss_pred cCCCCChhHHhhhccHHHHHHHHHHHHHhhhchHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHH
Q 009074 93 KDDDMPPIEAILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEI 172 (544)
Q Consensus 93 KdddmppieaiiApLeaelk~~r~Ei~kLqddnkaLerltksKEaALleAeR~v~~AlakA~~V~dlQN~N~EL~kQiEI 172 (544)
|--+++-+--.+--.++|+-.--+||-.|--..+-+-..+.++|..+.+..-.++. ++.| +|.
T Consensus 8 k~GEIsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~-------------K~~E----LE~ 70 (202)
T PF06818_consen 8 KSGEISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRT-------------KQLE----LEV 70 (202)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-------------hhHh----HHH
Confidence 33333334444444555555555667777767776666677777666665544332 2222 233
Q ss_pred HHHHhHHH---HHHhhhHHHHHHHHHHHHHHHHHHHHhch------------hhhhhhHHH-HHHHHHHHHHhhhHHHHH
Q 009074 173 CQEENKIL---DKMHRQKVAEVEKLTQTVRELEEAVLAGG------------AAANAVRDY-QRKVQEMNEERKTLDREL 236 (544)
Q Consensus 173 cqEEnkiL---dk~hRQKvaEVEKLtqTv~ELEEAvLagg------------aaaNAvrdy-qrq~~elneEkrtLerEL 236 (544)
|+.|-.-. ....|.| |-+|.+.+.+|.++.-..| .-|-+-+.. ..-+..|..+.-.|-.||
T Consensus 71 ce~ELqr~~~Ea~lLrek---l~~le~El~~Lr~~l~~~~~~~~~~~~l~~~deak~~~~~~~~~~~~l~~e~erL~aeL 147 (202)
T PF06818_consen 71 CENELQRKKNEAELLREK---LGQLEAELAELREELACAGRLKRQCQLLSESDEAKAQRQAGEDELGSLRREVERLRAEL 147 (202)
T ss_pred hHHHHHHHhCHHHHhhhh---hhhhHHHHHHHHHHHHhhccchhhhccccccchhHHhhccccccchhHHHHHHHHHHHH
Confidence 44432100 1223444 3344445555544443321 111111111 122455666677777777
Q ss_pred hhhhhhhhhhhhhhhhc---cccCCCCccch
Q 009074 237 ARAKVTANRVATVVANE---WKDANDKVMPV 264 (544)
Q Consensus 237 ARaKv~AnRVA~vVAnE---WKDendkVmPV 264 (544)
+.-+-..++-+.-+..| |.++-|||++-
T Consensus 148 ~~er~~~e~q~~~Fe~ER~~W~eEKekVi~Y 178 (202)
T PF06818_consen 148 QRERQRREEQRSSFEQERRTWQEEKEKVIRY 178 (202)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76666666655555443 88888888763
No 70
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=81.45 E-value=21 Score=34.00 Aligned_cols=112 Identities=22% Similarity=0.371 Sum_probs=71.3
Q ss_pred HHHHHHHHH-HHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhchhh-----hhhhHHHHHHHHHHHHHhhhHHHHHh
Q 009074 164 QELMKQIEI-CQEENKILDKMHRQKVAEVEKLTQTVRELEEAVLAGGAA-----ANAVRDYQRKVQEMNEERKTLDRELA 237 (544)
Q Consensus 164 ~EL~kQiEI-cqEEnkiLdk~hRQKvaEVEKLtqTv~ELEEAvLaggaa-----aNAvrdyqrq~~elneEkrtLerELA 237 (544)
-||-||+-| |-|---+|.++...=+. +-.....|-+.-.+-|.. -....+|+.++.+|..++..|+.+++
T Consensus 69 ~ELIRQVTi~C~ERGlLL~rvrde~~~----~l~~y~~l~~s~~~f~~rk~l~~e~~~~~l~~~i~~L~~e~~~L~~~~~ 144 (189)
T PF10211_consen 69 DELIRQVTIDCPERGLLLLRVRDEYRM----TLDAYQTLYESSIAFGMRKALQAEQGKQELEEEIEELEEEKEELEKQVQ 144 (189)
T ss_pred HHHHHHHHhCcHHHhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 379999999 99988999888665333 223333433333332211 12256889999999999999999997
Q ss_pred hhhhhhhhhhhhhhhccccCCCCccchhhHHHHhhhhHHHHHHHHHHH
Q 009074 238 RAKVTANRVATVVANEWKDANDKVMPVKQWLEERRFLQGEMQQLRDRL 285 (544)
Q Consensus 238 RaKv~AnRVA~vVAnEWKDendkVmPVKqWLEErR~LQGEmqrLrdKL 285 (544)
..+.-.-. +.. .+.. ..-.-.|.|-+|--||.-..++|++.|
T Consensus 145 ~l~~~~e~---~ek-~~~e--~~~~~~k~~~~ei~~lk~~~~ql~~~l 186 (189)
T PF10211_consen 145 ELKNKCEQ---LEK-REEE--LRQEEEKKHQEEIDFLKKQNQQLKAQL 186 (189)
T ss_pred HHHHHHHH---HHH-HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66544332 211 1100 112345778888888888888888776
No 71
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=81.39 E-value=1.3e+02 Score=36.07 Aligned_cols=52 Identities=23% Similarity=0.227 Sum_probs=46.5
Q ss_pred HHhhhhhHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhc
Q 009074 157 DDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEAVLAG 208 (544)
Q Consensus 157 ~dlQN~N~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLtqTv~ELEEAvLag 208 (544)
-.|||+-++|.-|....|+-..-+..-.|+---|+|-++..+.+||.++-|-
T Consensus 109 riLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk 160 (1265)
T KOG0976|consen 109 RILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAK 160 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhh
Confidence 3588999999999999999999999999999999999999999999987663
No 72
>PF13514 AAA_27: AAA domain
Probab=81.08 E-value=1.2e+02 Score=35.54 Aligned_cols=75 Identities=17% Similarity=0.276 Sum_probs=45.9
Q ss_pred HHHHHHHHHHhhhHHHHHhhhhhhhhhhhhhhhhccccCC--CCccchhhHHHHhhhhHHHHHHHHHHHHHhHHhhh
Q 009074 219 QRKVQEMNEERKTLDRELARAKVTANRVATVVANEWKDAN--DKVMPVKQWLEERRFLQGEMQQLRDRLAITERTAK 293 (544)
Q Consensus 219 qrq~~elneEkrtLerELARaKv~AnRVA~vVAnEWKDen--dkVmPVKqWLEErR~LQGEmqrLrdKLAiaERtAk 293 (544)
..++..+......+++++..-.-.++.++..+.-.|.+.. +.+--++.||++-+--+.+++++.+.+...+....
T Consensus 742 ~~~~~~~~~ri~~~~~~~~~f~~~~~~L~~~l~~~~~~~~~~~~~~~L~~~l~~a~~~~~~~~~l~~~~~~~~~~~~ 818 (1111)
T PF13514_consen 742 LAEIRELRRRIEQMEADLAAFEEQVAALAERLGPDLPEDPAEEALEALRARLEEAREAQEERERLQEQLEELEEELE 818 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555556666665555555555555555555432 35556778888877777888888888776665543
No 73
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=80.21 E-value=2.6 Score=46.49 Aligned_cols=69 Identities=22% Similarity=0.397 Sum_probs=38.0
Q ss_pred hHHHHHHHHHHHHHhhhHHHHHhhhhhhhhhhhh-hhhhccccCCCCcc-----chhhHHHH----hhhhHHHHHHHHHH
Q 009074 215 VRDYQRKVQEMNEERKTLDRELARAKVTANRVAT-VVANEWKDANDKVM-----PVKQWLEE----RRFLQGEMQQLRDR 284 (544)
Q Consensus 215 vrdyqrq~~elneEkrtLerELARaKv~AnRVA~-vVAnEWKDendkVm-----PVKqWLEE----rR~LQGEmqrLrdK 284 (544)
+..++.++..|..|...|..++..... ++.. ...++.....-+|. |.-.|... -.-|+.|.+.|+.+
T Consensus 505 ~~~L~~~~~~Le~e~~~L~~~~~~Le~---~l~~~~L~g~~~~~~trVL~lr~NP~~~~~~~k~~~l~~L~~En~~L~~~ 581 (722)
T PF05557_consen 505 LNELQKEIEELERENERLRQELEELES---ELEKLTLQGEFNPSKTRVLHLRDNPTSKAEQIKKSTLEALQAENEDLLAR 581 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHCCCT--BTTTEEEEEESS-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhhccccCCCCceeeeeCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444666777666666666666643322 2222 12355555656776 66777733 33466777777666
Q ss_pred HH
Q 009074 285 LA 286 (544)
Q Consensus 285 LA 286 (544)
|.
T Consensus 582 l~ 583 (722)
T PF05557_consen 582 LR 583 (722)
T ss_dssp HH
T ss_pred HH
Confidence 63
No 74
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=80.01 E-value=97 Score=33.83 Aligned_cols=190 Identities=19% Similarity=0.286 Sum_probs=89.8
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHhHHHHHHHHHHHHHHhhhccCCCCChhHHhhhccHHHHHH
Q 009074 34 PVFPKLTEELSKVEEKLKLAENLIETKNLEIKKINDEKRASMAAQFAAEATLRRVHAAQKDDDMPPIEAILAPLEAELKL 113 (544)
Q Consensus 34 KaveEl~~El~K~dEKLk~tE~lle~kNLEiKklndEKK~alAAQfAAEAtLRRvha~QKdddmppieaiiApLeaelk~ 113 (544)
+.|+++..++...+.+...++..|.+...+|..|..+-++ .+.+|-.+-. +.--++.-|.-||.+-
T Consensus 45 ~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~-------s~~~l~~~~~-----~I~~~~~~l~~l~~q~-- 110 (420)
T COG4942 45 KEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIE-------TADDLKKLRK-----QIADLNARLNALEVQE-- 110 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhHHHHHHh-----hHHHHHHHHHHHHHHH--
Confidence 3455555555555555555555555555555555554441 2222222111 1111222222222222
Q ss_pred HHHHHHHhhhchHHHHHH---------hhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHH-------HHHHHHHHHh
Q 009074 114 ARQEIAKLQDDNKALDRL---------TKSKEAALLEAERTVQVALAKASMVDDLQNKNQELM-------KQIEICQEEN 177 (544)
Q Consensus 114 ~r~Ei~kLqddnkaLerl---------tksKEaALleAeR~v~~AlakA~~V~dlQN~N~EL~-------kQiEIcqEEn 177 (544)
+.+-..|.+-..|+.|. ...+ ++.+.++++.-+..|+.++..+.-.|. .+=.....|.
T Consensus 111 -r~qr~~La~~L~A~~r~g~~p~~~ll~~~e-----da~~~~R~ai~~~~l~~~~~~~i~~l~~~~~~l~~~~~~iaaeq 184 (420)
T COG4942 111 -REQRRRLAEQLAALQRSGRNPPPALLVSPE-----DAQRSVRLAIYYGALNPARAERIDALKATLKQLAAVRAEIAAEQ 184 (420)
T ss_pred -HHHHHHHHHHHHHHHhccCCCCchhhcChh-----hhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666677762 3332 334445666555555544433333332 2222222233
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHhchhhhhh-hHHHHHHHHHHHHHhhhHHHHHhhhhhhhhhhh
Q 009074 178 KILDKMHRQKVAEVEKLTQTVRELEEAVLAGGAAANA-VRDYQRKVQEMNEERKTLDRELARAKVTANRVA 247 (544)
Q Consensus 178 kiLdk~hRQKvaEVEKLtqTv~ELEEAvLaggaaaNA-vrdyqrq~~elneEkrtLerELARaKv~AnRVA 247 (544)
.-|+.+.=+.+.+..||.+++.|=.... +-.|+ +.--+.+..+|.-.-..|..+++++...+-+++
T Consensus 185 ~~l~~~~~eq~~q~~kl~~~~~E~kk~~----~~l~~~l~~~q~~l~eL~~~~~~L~~~Ias~e~~aA~~r 251 (420)
T COG4942 185 AELTTLLSEQRAQQAKLAQLLEERKKTL----AQLNSELSADQKKLEELRANESRLKNEIASAEAAAAKAR 251 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344566666666665522211 12233 334456666777677777777777765444543
No 75
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.00 E-value=95 Score=35.64 Aligned_cols=59 Identities=32% Similarity=0.458 Sum_probs=47.2
Q ss_pred HHHHHHHhchhhhhhhHHHHHHHHHHHHHhhhHHHHHhhhhhhhhhhhhhhhhccccCCCCc
Q 009074 200 ELEEAVLAGGAAANAVRDYQRKVQEMNEERKTLDRELARAKVTANRVATVVANEWKDANDKV 261 (544)
Q Consensus 200 ELEEAvLaggaaaNAvrdyqrq~~elneEkrtLerELARaKv~AnRVA~vVAnEWKDendkV 261 (544)
+=||++|--.|+--+ .|-++|-+|.-|.+.+..||++++----|++.|+ ...|+.|.-|
T Consensus 89 e~EesLLqESaakE~--~yl~kI~eleneLKq~r~el~~~q~E~erl~~~~-sd~~e~~~~~ 147 (772)
T KOG0999|consen 89 EREESLLQESAAKEE--YYLQKILELENELKQLRQELTNVQEENERLEKVH-SDLKESNAAV 147 (772)
T ss_pred hhHHHHHHHHHHhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhcchhh
Confidence 457888876665443 6899999999999999999999999988987775 6677776544
No 76
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=79.89 E-value=22 Score=30.62 Aligned_cols=68 Identities=15% Similarity=0.333 Sum_probs=58.5
Q ss_pred HHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHHHhhhHHH
Q 009074 167 MKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEAVLAGGAAANAVRDYQRKVQEMNEERKTLDR 234 (544)
Q Consensus 167 ~kQiEIcqEEnkiLdk~hRQKvaEVEKLtqTv~ELEEAvLaggaaaNAvrdyqrq~~elneEkrtLer 234 (544)
.-++++..++-++|++||+--...+.++.+.+..|+..+-.--.--+.+..|-.|+..+......||.
T Consensus 13 ~~el~~t~~d~~LLe~mN~~~~~kY~~~~~~~~~l~~~~~~l~~k~~~l~~~l~~Id~Ie~~V~~LE~ 80 (99)
T PF10046_consen 13 ESELEATNEDYNLLENMNKATSLKYKKMKDIAAGLEKNLEDLNQKYEELQPYLQQIDQIEEQVTELEQ 80 (99)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788889999999999999999999999999999888877766778899998888888888887774
No 77
>PRK09039 hypothetical protein; Validated
Probab=79.78 E-value=80 Score=32.70 Aligned_cols=59 Identities=17% Similarity=0.272 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHHHhh
Q 009074 165 ELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEAVLAGGAAANAVRDYQRKVQEMNEERK 230 (544)
Q Consensus 165 EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLtqTv~ELEEAvLaggaaaNAvrdyqrq~~elneEkr 230 (544)
+|..+-.++.+.+.-+..+++ +|+-|...+..||.+|-+.-+. -++.+.++..|..+..
T Consensus 124 ~L~~~k~~~se~~~~V~~L~~----qI~aLr~Qla~le~~L~~ae~~---~~~~~~~i~~L~~~L~ 182 (343)
T PRK09039 124 ELDSEKQVSARALAQVELLNQ----QIAALRRQLAALEAALDASEKR---DRESQAKIADLGRRLN 182 (343)
T ss_pred HHHHHHHHHHHhhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 344444444444444444443 3555555556666555443111 2555555555544443
No 78
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=79.61 E-value=37 Score=37.54 Aligned_cols=111 Identities=27% Similarity=0.302 Sum_probs=63.5
Q ss_pred hhHHhhhccHH-HHHHHHHHHHHhhhchHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHh
Q 009074 99 PIEAILAPLEA-ELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEEN 177 (544)
Q Consensus 99 pieaiiApLea-elk~~r~Ei~kLqddnkaLerltksKEaALleAeR~v~~AlakA~~V~dlQN~N~EL~kQiEIcqEEn 177 (544)
-+|.++--++. +|.+.|+....+-...+.|......=|++-..+|+.++ .+|++.-++.+|+.-.+|+|
T Consensus 336 y~e~~~~e~~qsqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~----------q~q~k~~k~~kel~~~~E~n 405 (493)
T KOG0804|consen 336 YYEQIMSEYEQSQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQ----------QLQTKLKKCQKELKEEREEN 405 (493)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHH
Confidence 33344444433 77777766666655555555544444444444444333 56777777777887788999
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHHHhhhH
Q 009074 178 KILDKMHRQKVAEVEKLTQTVRELEEAVLAGGAAANAVRDYQRKVQEMNEERKTL 232 (544)
Q Consensus 178 kiLdk~hRQKvaEVEKLtqTv~ELEEAvLaggaaaNAvrdyqrq~~elneEkrtL 232 (544)
+.|-+-.- -...++.++||..- -++.-|+-++++|+|..+-|
T Consensus 406 ~~l~knq~-------vw~~kl~~~~e~~~------~~~~s~d~~I~dLqEQlrDl 447 (493)
T KOG0804|consen 406 KKLIKNQD-------VWRGKLKELEEREK------EALGSKDEKITDLQEQLRDL 447 (493)
T ss_pred HHHHhhHH-------HHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHhH
Confidence 88865321 12223333333321 23566778888888887765
No 79
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=79.49 E-value=99 Score=33.61 Aligned_cols=118 Identities=25% Similarity=0.304 Sum_probs=81.4
Q ss_pred HHHHHhhhhhhhhhhhhhHHHHhHHHHHHHHHHHHHHhhhccCCCCChh---------HHhhhccHHHHHHHHHHHHHhh
Q 009074 52 LAENLIETKNLEIKKINDEKRASMAAQFAAEATLRRVHAAQKDDDMPPI---------EAILAPLEAELKLARQEIAKLQ 122 (544)
Q Consensus 52 ~tE~lle~kNLEiKklndEKK~alAAQfAAEAtLRRvha~QKdddmppi---------eaiiApLeaelk~~r~Ei~kLq 122 (544)
.|..+++..++.|.+.+.+++.+.-+ .--+.+|=....|...+.++. -...+..=++|..+++|+.+++
T Consensus 66 ~akr~veel~~kLe~~~~~~~~a~~~--~e~~k~r~~e~e~~~~~~~~~~~k~ele~~~~q~~~~~~eL~~~k~EL~~lr 143 (522)
T PF05701_consen 66 SAKRTVEELKLKLEKAQAEEKQAEED--SELAKFRAKELEQGIAEEASVAWKAELESAREQYASAVAELDSVKQELEKLR 143 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh--hHHhHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445667777777777776643322 222333333333433333221 2345566678899999999988
Q ss_pred hchHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHH
Q 009074 123 DDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQ 174 (544)
Q Consensus 123 ddnkaLerltksKEaALleAeR~v~~AlakA~~V~dlQN~N~EL~kQiEIcq 174 (544)
.+ ++.+.-.|..|+-.|+..+..+-.-+-.|++|...+..|+.-|+-.+
T Consensus 144 ~e---~~~~~~~k~~A~~~aeea~~~a~~~~~kve~L~~Ei~~lke~l~~~~ 192 (522)
T PF05701_consen 144 QE---LASALDAKNAALKQAEEAVSAAEENEEKVEELSKEIIALKESLESAK 192 (522)
T ss_pred HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76 45556679999999999999999999999999999999988877654
No 80
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=79.41 E-value=79 Score=32.43 Aligned_cols=159 Identities=25% Similarity=0.268 Sum_probs=102.5
Q ss_pred cCCchhhhHHHHHH----HHHHHHHHHHHhhhhhhhhhhhhhHHHHhHHHHHHHHHHHHHHhhhccCCCCChhHHhhhcc
Q 009074 32 NLPVFPKLTEELSK----VEEKLKLAENLIETKNLEIKKINDEKRASMAAQFAAEATLRRVHAAQKDDDMPPIEAILAPL 107 (544)
Q Consensus 32 KdKaveEl~~El~K----~dEKLk~tE~lle~kNLEiKklndEKK~alAAQfAAEAtLRRvha~QKdddmppieaiiApL 107 (544)
.++-++.+..||.. ...++..++..|+.-|-.|++.+.|=. .. ..-+|-+.|--.-.||-|
T Consensus 61 ~~~~l~~ak~eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~--------~L-------~TYkD~EYPvK~vqIa~L 125 (258)
T PF15397_consen 61 NHKQLQQAKAELQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELN--------FL-------STYKDHEYPVKAVQIANL 125 (258)
T ss_pred ChHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH--------HH-------HHHhhhhhhHHHHHHHHH
Confidence 34445555555554 455567788888888888888776533 11 235777887777799999
Q ss_pred HHHHHHHHHHHHHhhhch-H-------HHHHHhhhHHHHHHH-HHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHhH
Q 009074 108 EAELKLARQEIAKLQDDN-K-------ALDRLTKSKEAALLE-AERTVQVALAKASMVDDLQNKNQELMKQIEICQEENK 178 (544)
Q Consensus 108 eaelk~~r~Ei~kLqddn-k-------aLerltksKEaALle-AeR~v~~AlakA~~V~dlQN~N~EL~kQiEIcqEEnk 178 (544)
.-.|...+..-..=.|+- + -|++....|...++. +-...+.++-.++ -..--+|+-+++.|+.+.++..
T Consensus 126 ~rqlq~lk~~qqdEldel~e~~~~el~~l~~~~q~k~~~il~~~~~k~~~~~~~~l--~~~~~~N~~m~kei~~~re~i~ 203 (258)
T PF15397_consen 126 VRQLQQLKDSQQDELDELNEMRQMELASLSRKIQEKKEEILSSAAEKTQSPMQPAL--LQRTLENQVMQKEIVQFREEID 203 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 999988875433222221 1 122333333333333 3333344444433 3333678899999999999998
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHh
Q 009074 179 ILDKMHRQKVAEVEKLTQTVRELEEAVLA 207 (544)
Q Consensus 179 iLdk~hRQKvaEVEKLtqTv~ELEEAvLa 207 (544)
-|+.--.+=-+||+.|...+++..+.|.+
T Consensus 204 el~e~I~~L~~eV~~L~~~~~~~Re~iF~ 232 (258)
T PF15397_consen 204 ELEEEIPQLRAEVEQLQAQAQDPREVIFA 232 (258)
T ss_pred HHHHHHHHHHHHHHHHHHhhcchHHHhhH
Confidence 88887777778888888888887777764
No 81
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=79.00 E-value=57 Score=30.58 Aligned_cols=92 Identities=24% Similarity=0.322 Sum_probs=62.8
Q ss_pred cHHHHHHHHHHHHHhhhchHHHHHHh----hhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHhHHHHH
Q 009074 107 LEAELKLARQEIAKLQDDNKALDRLT----KSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKILDK 182 (544)
Q Consensus 107 Leaelk~~r~Ei~kLqddnkaLerlt----ksKEaALleAeR~v~~AlakA~~V~dlQN~N~EL~kQiEIcqEEnkiLdk 182 (544)
.+.+||-++.+-+.|+|-.-+|+|=+ .+++.+.++||..=.....-=.-+..|-.....|.-.+..|-.|+..|++
T Consensus 8 v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k 87 (140)
T PF10473_consen 8 VEEKLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDK 87 (140)
T ss_pred HHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788899999999999988888865 45566666666443333333333455556666788889999999999999
Q ss_pred HhhhHHHHHHHHHHHH
Q 009074 183 MHRQKVAEVEKLTQTV 198 (544)
Q Consensus 183 ~hRQKvaEVEKLtqTv 198 (544)
+.-.+-..|.-|-...
T Consensus 88 ~lq~~q~kv~eLE~~~ 103 (140)
T PF10473_consen 88 ELQKKQEKVSELESLN 103 (140)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 8766644444443333
No 82
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=78.51 E-value=1.4e+02 Score=34.77 Aligned_cols=124 Identities=27% Similarity=0.335 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHhh-----hhHHhhhhhHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh------ch
Q 009074 141 EAERTVQVALAKAS-----MVDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEAVLA------GG 209 (544)
Q Consensus 141 eAeR~v~~AlakA~-----~V~dlQN~N~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLtqTv~ELEEAvLa------gg 209 (544)
|-|..|+.|+.+.+ +--+|+.+..|+.+++....-||.-|-+..-.|..-|..|+..-...|.-+-. +.
T Consensus 67 e~eq~i~~~~~~~s~e~e~~~~~le~~l~e~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~ 146 (769)
T PF05911_consen 67 EQEQKIHEAVAKKSKEWEKIKSELEAKLAELSKRLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLEST 146 (769)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 44556666666653 34599999999999999999999999887777766666666555555532211 23
Q ss_pred hhhhhhHHHHHHHHHHHHHhhhHHHHHhhhhhhhhhhhhhhhhccccCCCCccchhhHHHHhhh---hHHHHHHHHH
Q 009074 210 AAANAVRDYQRKVQEMNEERKTLDRELARAKVTANRVATVVANEWKDANDKVMPVKQWLEERRF---LQGEMQQLRD 283 (544)
Q Consensus 210 aaaNAvrdyqrq~~elneEkrtLerELARaKv~AnRVA~vVAnEWKDendkVmPVKqWLEErR~---LQGEmqrLrd 283 (544)
--=|+-=.|+=.+..=.=|.|+.|||+-+--+ =+ -=|||||-..= |.+|-||||-
T Consensus 147 eken~~Lkye~~~~~keleir~~E~~~~~~~a-------e~------------a~kqhle~vkkiakLEaEC~rLr~ 204 (769)
T PF05911_consen 147 EKENSSLKYELHVLSKELEIRNEEREYSRRAA-------EA------------ASKQHLESVKKIAKLEAECQRLRA 204 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-------HH------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555554444566777777743221 11 23799998764 7899999985
No 83
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=78.15 E-value=55 Score=29.93 Aligned_cols=34 Identities=24% Similarity=0.340 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHhhhchHHHHHHhhhHHHHHHH
Q 009074 108 EAELKLARQEIAKLQDDNKALDRLTKSKEAALLE 141 (544)
Q Consensus 108 eaelk~~r~Ei~kLqddnkaLerltksKEaALle 141 (544)
+.++....+.+..+++....++......+..+..
T Consensus 80 ~~e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~ 113 (191)
T PF04156_consen 80 QGELSELQQQLQQLQEELDQLQERIQELESELEK 113 (191)
T ss_pred hhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444443333333
No 84
>PHA03161 hypothetical protein; Provisional
Probab=77.62 E-value=7.8 Score=36.97 Aligned_cols=53 Identities=21% Similarity=0.281 Sum_probs=46.9
Q ss_pred hHHhhhhhHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhc
Q 009074 156 VDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEAVLAG 208 (544)
Q Consensus 156 V~dlQN~N~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLtqTv~ELEEAvLag 208 (544)
-.+++|..+-|--+|+.-+-|.-+|-+.+|-||..+|+|+--|.||.+-|-.-
T Consensus 56 ~~~i~~~v~~l~~~I~~k~kE~~~L~~fd~kkl~~~E~L~drv~eLkeel~~E 108 (150)
T PHA03161 56 QKSIEGMLQAVDLSIQEKKKELSLLKAFDRHKLSAAEDLQDKILELKEDIHFE 108 (150)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788888888999999999999999999999999999999999998876543
No 85
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=77.60 E-value=85 Score=31.80 Aligned_cols=71 Identities=23% Similarity=0.252 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHhHHHHHHHHHHHHHHhhhccCCCCChhHHhhhccHHHHHHHHHHHHHhh
Q 009074 43 LSKVEEKLKLAENLIETKNLEIKKINDEKRASMAAQFAAEATLRRVHAAQKDDDMPPIEAILAPLEAELKLARQEIAKLQ 122 (544)
Q Consensus 43 l~K~dEKLk~tE~lle~kNLEiKklndEKK~alAAQfAAEAtLRRvha~QKdddmppieaiiApLeaelk~~r~Ei~kLq 122 (544)
+.++|-.+--.+-...+..-+++++..|+-++-.+--+.+- .+-.|+-.+.-+|++|...+..+..++
T Consensus 12 iq~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~------------e~e~le~qv~~~e~ei~~~r~r~~~~e 79 (239)
T COG1579 12 IQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEI------------ELEDLENQVSQLESEIQEIRERIKRAE 79 (239)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444445555555555554433322222222 233455566666666666666666655
Q ss_pred hch
Q 009074 123 DDN 125 (544)
Q Consensus 123 ddn 125 (544)
+..
T Consensus 80 ~kl 82 (239)
T COG1579 80 EKL 82 (239)
T ss_pred HHH
Confidence 543
No 86
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=77.07 E-value=55 Score=29.34 Aligned_cols=89 Identities=21% Similarity=0.297 Sum_probs=45.3
Q ss_pred hhccHHHHHHHHHHHHHhhhchHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHhHHHHHH
Q 009074 104 LAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKILDKM 183 (544)
Q Consensus 104 iApLeaelk~~r~Ei~kLqddnkaLerltksKEaALleAeR~v~~AlakA~~V~dlQN~N~EL~kQiEIcqEEnkiLdk~ 183 (544)
+..+++|+......+..|++....++|-.-+.+...-.+...++.+....-...| |+.|..-.++.=..-..-=
T Consensus 61 ~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~ke------e~~klk~~~~~~~tq~~~e 134 (151)
T PF11559_consen 61 LRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKE------ELQKLKNQLQQRKTQYEHE 134 (151)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHH
Confidence 4456666666667777777777777666555555555555555544443333322 2222222222111111222
Q ss_pred hhhHHHHHHHHHHHH
Q 009074 184 HRQKVAEVEKLTQTV 198 (544)
Q Consensus 184 hRQKvaEVEKLtqTv 198 (544)
-|.|..|+++|..-+
T Consensus 135 ~rkke~E~~kLk~rL 149 (151)
T PF11559_consen 135 LRKKEREIEKLKERL 149 (151)
T ss_pred HHHHHHHHHHHHHHh
Confidence 466777777776544
No 87
>smart00338 BRLZ basic region leucin zipper.
Probab=76.60 E-value=23 Score=27.81 Aligned_cols=59 Identities=29% Similarity=0.296 Sum_probs=45.7
Q ss_pred chHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHhHHHHH
Q 009074 124 DNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKILDK 182 (544)
Q Consensus 124 dnkaLerltksKEaALleAeR~v~~AlakA~~V~dlQN~N~EL~kQiEIcqEEnkiLdk 182 (544)
|.+-..|..+++++|--.=++...-...--.-|.+|...|.+|..+++....|+..|..
T Consensus 3 ~~k~~rR~~rNR~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~ 61 (65)
T smart00338 3 DEKRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKS 61 (65)
T ss_pred cHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788899999988888777766666677788888888888888887777766644
No 88
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=76.50 E-value=78 Score=30.81 Aligned_cols=27 Identities=37% Similarity=0.230 Sum_probs=16.3
Q ss_pred HHHHHHHHHHhhhHHHHHhhhhhhhhh
Q 009074 219 QRKVQEMNEERKTLDRELARAKVTANR 245 (544)
Q Consensus 219 qrq~~elneEkrtLerELARaKv~AnR 245 (544)
+.++.++..+....+..|.+..+.|--
T Consensus 185 ~~~i~~~~~~l~~a~~~l~~~~I~AP~ 211 (334)
T TIGR00998 185 QPAVQEAKERLKTAWLALKRTVIRAPF 211 (334)
T ss_pred hHHHHHHHHHHHHHHHHhhCcEEEcCC
Confidence 344555566666666667776666653
No 89
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=75.48 E-value=29 Score=33.47 Aligned_cols=64 Identities=33% Similarity=0.520 Sum_probs=41.7
Q ss_pred HHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHHHhhhHHHHHhhhhhhhhhh
Q 009074 173 CQEENKILDKMHRQKVAEVEKLTQTVRELEEAVLAGGAAANAVRDYQRKVQEMNEERKTLDRELARAKVTANRV 246 (544)
Q Consensus 173 cqEEnkiLdk~hRQKvaEVEKLtqTv~ELEEAvLaggaaaNAvrdyqrq~~elneEkrtLerELARaKv~AnRV 246 (544)
+.++.+-+++--.++-.|-.++...+.+||.-|+ .+|++.+.|.+++..-+.|++|.++.++.+
T Consensus 108 ~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~----------el~~~~~~~~~~ke~~~~ei~~lks~~~~l 171 (190)
T PF05266_consen 108 LLEERKKLEKKIEEKEAELKELESEIKELEMKIL----------ELQRQAAKLKEKKEAKDKEISRLKSEAEAL 171 (190)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444344445556677777777777665 667777777777777778888888877754
No 90
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=74.95 E-value=88 Score=35.17 Aligned_cols=171 Identities=23% Similarity=0.280 Sum_probs=89.1
Q ss_pred chhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHH-H--HhHHHHHHHH-HHHHHHhhhccCCCCChhHHhhhccHHH
Q 009074 35 VFPKLTEELSKVEEKLKLAENLIETKNLEIKKINDEK-R--ASMAAQFAAE-ATLRRVHAAQKDDDMPPIEAILAPLEAE 110 (544)
Q Consensus 35 aveEl~~El~K~dEKLk~tE~lle~kNLEiKklndEK-K--~alAAQfAAE-AtLRRvha~QKdddmppieaiiApLeae 110 (544)
-+-+|++-|.-.=+|...+|.+=--.-.+|.-+.+-- + .-+.+-|=+| +|+|+ +|.--.++
T Consensus 43 El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~---------------~l~e~~~~ 107 (546)
T KOG0977|consen 43 ELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARK---------------LLDETARE 107 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHH---------------HHHHHHHH
Confidence 4667788887777888777765222222222211100 0 1122222222 12222 34444455
Q ss_pred HHHHHHHHHHhhhchHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHhHHHHHHhhhHHHH
Q 009074 111 LKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKILDKMHRQKVAE 190 (544)
Q Consensus 111 lk~~r~Ei~kLqddnkaLerltksKEaALleAeR~v~~AlakA~~V~dlQN~N~EL~kQiEIcqEEnkiLdk~hRQKvaE 190 (544)
.-.+..+|.+|+++++-|....-.++..+..++-.+...+. ...+++...--+++.|.+|-+|.+-|-+ |
T Consensus 108 ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~---~l~~leAe~~~~krr~~~le~e~~~Lk~-------e 177 (546)
T KOG0977|consen 108 RAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLS---RLSELEAEINTLKRRIKALEDELKRLKA-------E 177 (546)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhh---hhhhhhhHHHHHHHHHHHHHHHHHHHHH-------H
Confidence 55566677777777777666665565555555544444433 3456777777788888888877765543 3
Q ss_pred HHHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHHHhhhHH
Q 009074 191 VEKLTQTVRELEEAVLAGGAAANAVRDYQRKVQEMNEERKTLD 233 (544)
Q Consensus 191 VEKLtqTv~ELEEAvLaggaaaNAvrdyqrq~~elneEkrtLe 233 (544)
+..|..++..+--.+ -+..+.-.||+.+++.|.+|...+.
T Consensus 178 n~rl~~~l~~~r~~l---d~Etllr~d~~n~~q~Lleel~f~~ 217 (546)
T KOG0977|consen 178 NSRLREELARARKQL---DDETLLRVDLQNRVQTLLEELAFLK 217 (546)
T ss_pred hhhhHHHHHHHHHHH---HHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 444444433322111 1233344566666666665554443
No 91
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=74.88 E-value=1.3e+02 Score=32.75 Aligned_cols=194 Identities=18% Similarity=0.305 Sum_probs=124.4
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhhhhhhh------HHHHhHHHHHHHHHHHHHHhhhccCCCCChhHHhhhccHHHHH
Q 009074 39 LTEELSKVEEKLKLAENLIETKNLEIKKIND------EKRASMAAQFAAEATLRRVHAAQKDDDMPPIEAILAPLEAELK 112 (544)
Q Consensus 39 l~~El~K~dEKLk~tE~lle~kNLEiKklnd------EKK~alAAQfAAEAtLRRvha~QKdddmppieaiiApLeaelk 112 (544)
+..++..+.+++..+..+|.+ |+++.... ++=+.|..++--|..-+..- +..+|-+...|.-++...+
T Consensus 254 i~~~i~~l~~~i~~~~~~l~~--l~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~v----ek~~~~l~~~l~~~~e~~~ 327 (569)
T PRK04778 254 IEKEIQDLKEQIDENLALLEE--LDLDEAEEKNEEIQERIDQLYDILEREVKARKYV----EKNSDTLPDFLEHAKEQNK 327 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHh--cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhhHHHHHHHHHHHHHHH
Confidence 567778888888887777776 33333322 33456666666665533222 3456788999999999999
Q ss_pred HHHHHHHHhhhc----------hHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHH-hHHHH
Q 009074 113 LARQEIAKLQDD----------NKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEE-NKILD 181 (544)
Q Consensus 113 ~~r~Ei~kLqdd----------nkaLerltksKEaALleAeR~v~~AlakA~~V~dlQN~N~EL~kQiEIcqEE-nkiLd 181 (544)
....|+..|+.. .+.++.-++.=+..+.+.. ...-..+....+++.+..++.++++...++ .+|-+
T Consensus 328 ~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~---~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e 404 (569)
T PRK04778 328 ELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEIT---ERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSE 404 (569)
T ss_pred HHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHH---HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998 6677666666665555443 344455555788888888888888665554 34444
Q ss_pred HHhhhHHHHH------HHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHHHhhhHHHHHhhhhhh
Q 009074 182 KMHRQKVAEV------EKLTQTVRELEEAVLAGGAAANAVRDYQRKVQEMNEERKTLDRELARAKVT 242 (544)
Q Consensus 182 k~hRQKvaEV------EKLtqTv~ELEEAvLaggaaaNAvrdyqrq~~elneEkrtLerELARaKv~ 242 (544)
.+....-.|. .++..++.++...|...+-.- -=.+|...+.+...+...|..+|.+..|-
T Consensus 405 ~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l~k~~lpg-ip~~y~~~~~~~~~~i~~l~~~L~~g~VN 470 (569)
T PRK04778 405 MLQGLRKDELEAREKLERYRNKLHEIKRYLEKSNLPG-LPEDYLEMFFEVSDEIEALAEELEEKPIN 470 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC-CcHHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 4444443332 444455555554444431110 13467777778888888888888774433
No 92
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=74.69 E-value=1.1e+02 Score=36.96 Aligned_cols=117 Identities=22% Similarity=0.315 Sum_probs=92.0
Q ss_pred cHHHHHHHHHHHHHhhhchHHHHHHhhhHHHHHHHHHHHHHHHHH-HhhhhHHhhhhhHHHHHHHHHHHHHhHHHHHHhh
Q 009074 107 LEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALA-KASMVDDLQNKNQELMKQIEICQEENKILDKMHR 185 (544)
Q Consensus 107 Leaelk~~r~Ei~kLqddnkaLerltksKEaALleAeR~v~~Ala-kA~~V~dlQN~N~EL~kQiEIcqEEnkiLdk~hR 185 (544)
+.++++.++.++..++..++..++..|..+.++--.|+.+..+-+ +-.-+.|+++....++.+++... +.+++
T Consensus 739 ~~~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~e~~~---~~~ek--- 812 (1174)
T KOG0933|consen 739 LLDDLKELLEEVEESEQQIKEKERALKKCEDKISTLEKKMKDAKANRERRLKDLEKEIKTAKQRAEESS---KELEK--- 812 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHH---HHHHH---
Confidence 456788888899999999999999999999999888888887764 44567888888888777776443 34443
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHHHhhhHHHHHhhhh
Q 009074 186 QKVAEVEKLTQTVRELEEAVLAGGAAANAVRDYQRKVQEMNEERKTLDRELARAK 240 (544)
Q Consensus 186 QKvaEVEKLtqTv~ELEEAvLaggaaaNAvrdyqrq~~elneEkrtLerELARaK 240 (544)
+..|++.|.-++.+|+-. ++-|+++...++...++|..|+.-..
T Consensus 813 -~~~e~e~l~lE~e~l~~e----------~~~~k~~l~~~~~~~~~l~~e~~~l~ 856 (1174)
T KOG0933|consen 813 -RENEYERLQLEHEELEKE----------ISSLKQQLEQLEKQISSLKSELGNLE 856 (1174)
T ss_pred -HHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456888888888888765 46688999999999999999986443
No 93
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=73.61 E-value=2.2e+02 Score=34.64 Aligned_cols=38 Identities=13% Similarity=0.219 Sum_probs=26.2
Q ss_pred HHHHHHhhhhcccccccChhHHHHHHHHhHhhhhhHHH
Q 009074 446 EVVALRKAGHEKDQSLKDKDDAIEILAKKVDTLTKAME 483 (544)
Q Consensus 446 EVi~LRKac~eKdqsLkdKddaIeML~KKVdtLtKAmE 483 (544)
-+-.|...+.+-+..+...+++|..|...++.|+..++
T Consensus 743 ri~el~~~IaeL~~~i~~l~~~l~~l~~r~~~L~~e~~ 780 (1353)
T TIGR02680 743 RIAELDARLAAVDDELAELARELRALGARQRALADELA 780 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666677777778888888888777776543
No 94
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=71.88 E-value=17 Score=31.23 Aligned_cols=58 Identities=24% Similarity=0.391 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHHHhhhHHHHHhhhhhhhhhhhh
Q 009074 191 VEKLTQTVRELEEAVLAGGAAANAVRDYQRKVQEMNEERKTLDRELARAKVTANRVAT 248 (544)
Q Consensus 191 VEKLtqTv~ELEEAvLaggaaaNAvrdyqrq~~elneEkrtLerELARaKv~AnRVA~ 248 (544)
+..|.+-|..||.+|-.--...+....++..++.|+..+..|+.||-.+..-+|++-.
T Consensus 10 l~rL~~aid~LE~~v~~r~~~~~~~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~ 67 (89)
T PF13747_consen 10 LTRLEAAIDRLEKAVDRRLERDRKRDELEEEIQRLDADRSRLAQELDQAEARANRLEE 67 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHH
Confidence 3567788888999988877777777999999999999999999999998887776443
No 95
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=71.81 E-value=74 Score=28.41 Aligned_cols=70 Identities=20% Similarity=0.371 Sum_probs=52.0
Q ss_pred HHHHHHhchhhhhhhHHHHHHHHHHHHHhhhHHHHHhhhhhhhhhhhhhhhhccccCCCCccchhhHHHHhhhhHHHHHH
Q 009074 201 LEEAVLAGGAAANAVRDYQRKVQEMNEERKTLDRELARAKVTANRVATVVANEWKDANDKVMPVKQWLEERRFLQGEMQQ 280 (544)
Q Consensus 201 LEEAvLaggaaaNAvrdyqrq~~elneEkrtLerELARaKv~AnRVA~vVAnEWKDendkVmPVKqWLEErR~LQGEmqr 280 (544)
.|.-+..-+.++.++..++.+++++..+...|..++.-|+..... --.-|-+++..|..|+..
T Consensus 47 YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~-----------------~e~sw~~qk~~le~e~~~ 109 (132)
T PF07926_consen 47 YERELVKHAEDIKELQQLREELQELQQEINELKAEAESAKAELEE-----------------SEASWEEQKEQLEKELSE 109 (132)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHhHHHHHHHHHHHHHH
Confidence 455566667778888888888888888888888877666654421 123599999999999999
Q ss_pred HHHHHHH
Q 009074 281 LRDRLAI 287 (544)
Q Consensus 281 LrdKLAi 287 (544)
+..++.-
T Consensus 110 ~~~r~~d 116 (132)
T PF07926_consen 110 LEQRIED 116 (132)
T ss_pred HHHHHHH
Confidence 9888653
No 96
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=71.81 E-value=19 Score=35.75 Aligned_cols=77 Identities=23% Similarity=0.361 Sum_probs=48.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHhHHHHHHHHHHHHHHhhhccCCCCChhHHhhhccHHHHHHHH
Q 009074 36 FPKLTEELSKVEEKLKLAENLIETKNLEIKKINDEKRASMAAQFAAEATLRRVHAAQKDDDMPPIEAILAPLEAELKLAR 115 (544)
Q Consensus 36 veEl~~El~K~dEKLk~tE~lle~kNLEiKklndEKK~alAAQfAAEAtLRRvha~QKdddmppieaiiApLeaelk~~r 115 (544)
++.+..+|.+--+-+...+..|+.-.-|+..|..||.. =..-||-||..-.+ +|++|.-+++|-...+
T Consensus 13 lek~k~~i~~e~~~~e~ee~~L~e~~kE~~~L~~Er~~-------h~eeLrqI~~DIn~-----lE~iIkqa~~er~~~~ 80 (230)
T PF10146_consen 13 LEKLKNEILQEVESLENEEKCLEEYRKEMEELLQERMA-------HVEELRQINQDINT-----LENIIKQAESERNKRQ 80 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHH
Confidence 44455555555556666677777777788888888873 34568888864332 5666665555555555
Q ss_pred HHHHHhhhc
Q 009074 116 QEIAKLQDD 124 (544)
Q Consensus 116 ~Ei~kLqdd 124 (544)
..|..+++.
T Consensus 81 ~~i~r~~ee 89 (230)
T PF10146_consen 81 EKIQRLYEE 89 (230)
T ss_pred HHHHHHHHH
Confidence 555555443
No 97
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=70.46 E-value=1.6e+02 Score=31.81 Aligned_cols=170 Identities=24% Similarity=0.263 Sum_probs=80.7
Q ss_pred hhhccHHHHHHHHHHHHHhhhchHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHhHHHHH
Q 009074 103 ILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKILDK 182 (544)
Q Consensus 103 iiApLeaelk~~r~Ei~kLqddnkaLerltksKEaALleAeR~v~~AlakA~~V~dlQN~N~EL~kQiEIcqEEnkiLdk 182 (544)
-++.|--+|..+.+|+..+......+ +..+.-.++.+-+++....-+. +.|+.+..+|..-|....+.-.+.--
T Consensus 110 e~a~lk~~l~e~~~El~~l~~~l~~l----~~~~~~~~~~~~~~~~l~~~~~--~sL~ekl~lld~al~~~~~~~~~~~~ 183 (511)
T PF09787_consen 110 ELAVLKIRLQELDQELRRLRRQLEEL----QNEKSRILSDESTVSRLQNGAP--RSLQEKLSLLDEALKREDGNAITAVV 183 (511)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH----HHhhhccCchhHHHHHHHHHHH--hhHHHHHHHHHHHHHhcCccHHHHHH
Confidence 45555444444555544444332222 1122222333444444333333 77888888887777766554333222
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHHHhhh-------HHHHHhhhhhhhhhhhhh---hhh
Q 009074 183 MHRQKVAEVEKLTQTVRELEEAVLAGGAAANAVRDYQRKVQEMNEERKT-------LDRELARAKVTANRVATV---VAN 252 (544)
Q Consensus 183 ~hRQKvaEVEKLtqTv~ELEEAvLaggaaaNAvrdyqrq~~elneEkrt-------LerELARaKv~AnRVA~v---VAn 252 (544)
.+=.+.++.+. ...+|++..- |.+-.-.|.++..++.+..++ .+-||.--|+-|+|+-.. ..+
T Consensus 184 ~fl~rtl~~e~---~~~~L~~~~~----A~~~~~~~l~~~~e~~~~l~l~~~~~~~~~~el~~Yk~kA~~iLq~kEklI~ 256 (511)
T PF09787_consen 184 EFLKRTLKKEI---ERQELEERPK----ALRHYIEYLRESGELQEQLELLKAEGESEEAELQQYKQKAQRILQSKEKLIE 256 (511)
T ss_pred HHHHHHHHHHH---HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 22222222222 2344444443 222344455555554444443 444555555555554332 122
Q ss_pred cccc-----CCCCc---cchhhHHHHhhhhHHHHHHHHHHH
Q 009074 253 EWKD-----ANDKV---MPVKQWLEERRFLQGEMQQLRDRL 285 (544)
Q Consensus 253 EWKD-----endkV---mPVKqWLEErR~LQGEmqrLrdKL 285 (544)
.-|. +.|.- |-..+--.|+-+++-||+.|+..|
T Consensus 257 ~LK~~~~~~~~~~~~~~~el~~l~~E~~~~~ee~~~l~~Qi 297 (511)
T PF09787_consen 257 SLKEGCLEEGFDSSTNSIELEELKQERDHLQEEIQLLERQI 297 (511)
T ss_pred HHHhcccccccccccchhcchhhHHHHHHHHHHHHHHHHHH
Confidence 2333 22210 113455578888899999888887
No 98
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=69.81 E-value=1.9e+02 Score=32.20 Aligned_cols=52 Identities=19% Similarity=0.180 Sum_probs=28.0
Q ss_pred HHHHHHHhhhccCCCCChhHHhhhccHHHHHHHHHHHHHhhhchHHHHHHhh
Q 009074 82 EATLRRVHAAQKDDDMPPIEAILAPLEAELKLARQEIAKLQDDNKALDRLTK 133 (544)
Q Consensus 82 EAtLRRvha~QKdddmppieaiiApLeaelk~~r~Ei~kLqddnkaLerltk 133 (544)
-+..|+-|.---.+..+-.+.-|+-|+.+|..++.+....+-....+.+.+.
T Consensus 217 l~~fk~~~~l~~~~~~~~~~~~L~~l~~ql~~a~~~~~~a~a~~~~l~~~l~ 268 (754)
T TIGR01005 217 VAAYRAQSDLLMGNNATLATQQLAELNTELSRARANRAAAEGTADSVKKALQ 268 (754)
T ss_pred HHHHHHHcCCcccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444433222223333466777777777777766666666666655544
No 99
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=69.71 E-value=1.8e+02 Score=32.07 Aligned_cols=72 Identities=24% Similarity=0.303 Sum_probs=44.9
Q ss_pred CCCchhHHHHHHHHHHHHHHhh---hh-----cccccccChh----------HHHHHHHHhHhhhhhHHHHHHHHHhHHH
Q 009074 432 EDSVPGVLYDLLQKEVVALRKA---GH-----EKDQSLKDKD----------DAIEILAKKVDTLTKAMEVEAKKMRREV 493 (544)
Q Consensus 432 ~D~Vsg~LYD~LQKEVi~LRKa---c~-----eKdqsLkdKd----------daIeML~KKVdtLtKAmEVEaKKmrREv 493 (544)
-+.-+|-++|.+-.|+-.++.- -+ -|++..+|=- =--+-|-.-+..||.----|.--+|.|.
T Consensus 254 ~~~s~~~~l~aileeL~eIk~~q~~Leesye~Lke~~krdy~fi~etLQEERyR~erLEEqLNdlteLqQnEi~nLKqEl 333 (455)
T KOG3850|consen 254 PYHSQGAALDAILEELREIKETQALLEESYERLKEQIKRDYKFIAETLQEERYRYERLEEQLNDLTELQQNEIANLKQEL 333 (455)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 5677888888888777555432 11 1333322211 0123344556677777777888999999
Q ss_pred HHhHHHHHhh
Q 009074 494 AAMEKEVAAM 503 (544)
Q Consensus 494 aa~EKEvaa~ 503 (544)
|-||--||--
T Consensus 334 asmeervaYQ 343 (455)
T KOG3850|consen 334 ASMEERVAYQ 343 (455)
T ss_pred HHHHHHHHHH
Confidence 9999887743
No 100
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.52 E-value=1.9e+02 Score=33.33 Aligned_cols=127 Identities=27% Similarity=0.394 Sum_probs=84.4
Q ss_pred hhhhhhhhhhhHHHHhHHHHHHHHHHHHHHhhhccCCCCChhHHhhhccHHHHHHHHHHHHHhhhchHHHHHHhhhHHHH
Q 009074 59 TKNLEIKKINDEKRASMAAQFAAEATLRRVHAAQKDDDMPPIEAILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAA 138 (544)
Q Consensus 59 ~kNLEiKklndEKK~alAAQfAAEAtLRRvha~QKdddmppieaiiApLeaelk~~r~Ei~kLqddnkaLerltksKEaA 138 (544)
-.++.+|-|-.-|++-+ .|||-|-.+-|----+.+-..=.-.|.|-.+.-.-..||....|+|. -++|
T Consensus 605 ~~ilklksllstkreqi-------~tlrtvlkankqtaevaltnlksKYEnEK~mvtetm~KlRnELk~Lk-----edaa 672 (772)
T KOG0999|consen 605 EQILKLKSLLSTKREQI-------TTLRTVLKANKQTAEVALTNLKSKYENEKAMVTETMDKLRNELKALK-----EDAA 672 (772)
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHhHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHHH-----HHHH
Confidence 34677777777777654 58888887776543333333333445555555545555555555543 2455
Q ss_pred HHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHH
Q 009074 139 LLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELE 202 (544)
Q Consensus 139 LleAeR~v~~AlakA~~V~dlQN~N~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLtqTv~ELE 202 (544)
-+..-|++= |.-|++.--+..||.+|+.-..+|.|+|.-+.|.-|.--=-|||-+.+||
T Consensus 673 tfsslramf-----~~R~ee~~tq~de~~~ql~aaedekKtln~llrmaiqqklaltqrle~~e 731 (772)
T KOG0999|consen 673 TFSSLRAMF-----AARCEEYVTQLDELQRQLAAAEDEKKTLNQLLRMAIQQKLALTQRLEELE 731 (772)
T ss_pred HHHHHHHHh-----cchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566555553 44577777888888899999999999999999988776666777776665
No 101
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=67.71 E-value=1.7 Score=47.80 Aligned_cols=71 Identities=30% Similarity=0.455 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHH-------hhhHHHHHhhhhhhhhhhhhhhhhccccCCCCccchhhHHHHhhh--hHHHHHHHHHHH
Q 009074 215 VRDYQRKVQEMNEE-------RKTLDRELARAKVTANRVATVVANEWKDANDKVMPVKQWLEERRF--LQGEMQQLRDRL 285 (544)
Q Consensus 215 vrdyqrq~~elneE-------krtLerELARaKv~AnRVA~vVAnEWKDendkVmPVKqWLEErR~--LQGEmqrLrdKL 285 (544)
+-||++++.+|.+. +..||.||.++...-.. --..|-.+.. +..+.|-+.++. +.-|+.+|++++
T Consensus 327 ~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~~~~~q-----le~~k~qi~e-Le~~l~~~~~~~~~l~~e~~~L~ek~ 400 (713)
T PF05622_consen 327 LEDLKRQVKELEEDNAVLLETKAMLEEELKKARALKSQ-----LEEYKKQIQE-LEQKLSEESRRADKLEFENKQLEEKL 400 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-----HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666555553 34788888765432211 1223332222 244555555554 678888999998
Q ss_pred HHhHHh
Q 009074 286 AITERT 291 (544)
Q Consensus 286 AiaERt 291 (544)
..+++.
T Consensus 401 ~~l~~e 406 (713)
T PF05622_consen 401 EALEEE 406 (713)
T ss_dssp ------
T ss_pred HHHHHH
Confidence 877654
No 102
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=67.33 E-value=2e+02 Score=31.70 Aligned_cols=25 Identities=28% Similarity=0.458 Sum_probs=12.0
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHH
Q 009074 181 DKMHRQKVAEVEKLTQTVRELEEAV 205 (544)
Q Consensus 181 dk~hRQKvaEVEKLtqTv~ELEEAv 205 (544)
+.+.++...++.+|...+.++|+-+
T Consensus 383 ~~~~~~~~~~~~~~~~~~~~~e~el 407 (650)
T TIGR03185 383 QQVKRELQDAKSQLLKELRELEEEL 407 (650)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3334333445555555555555544
No 103
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton]
Probab=66.92 E-value=52 Score=35.93 Aligned_cols=104 Identities=27% Similarity=0.389 Sum_probs=74.4
Q ss_pred hhhccHHHHHHHHHHHHHhhhchHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHhHHHHH
Q 009074 103 ILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKILDK 182 (544)
Q Consensus 103 iiApLeaelk~~r~Ei~kLqddnkaLerltksKEaALleAeR~v~~AlakA~~V~dlQN~N~EL~kQiEIcqEEnkiLdk 182 (544)
.---|+..++..-+||+..+.++.+|++-++.|+..|.-|+-.+.-= -+-=|-| -|-+ .
T Consensus 286 ar~kL~~ql~k~leEi~~~e~~I~~le~airdK~~pLKVAqTRle~R---------t~RPnvE------LCrD------~ 344 (421)
T KOG2685|consen 286 ARNKLEWQLAKTLEEIADAENNIEALERAIRDKEGPLKVAQTRLENR---------TYRPNVE------LCRD------Q 344 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcccccHHHHHHHHHHc---------ccCCchH------HHHh------H
Confidence 45568899999999999999999999999999999998887554310 0111333 3322 2
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHHHhhhHHHHHh
Q 009074 183 MHRQKVAEVEKLTQTVRELEEAVLAGGAAANAVRDYQRKVQEMNEERKTLDRELA 237 (544)
Q Consensus 183 ~hRQKvaEVEKLtqTv~ELEEAvLaggaaaNAvrdyqrq~~elneEkrtLerELA 237 (544)
-+=-=+.||+.|..|+.-|.+-+. .-+.-.+-|-.-+..|+++|+
T Consensus 345 AQ~~L~~EV~~l~~t~~~L~~kL~----------eA~~~l~~L~~~~~rLe~di~ 389 (421)
T KOG2685|consen 345 AQYRLVDEVHELDDTVAALKEKLD----------EAEDSLKLLVNHRARLERDIA 389 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHH
Confidence 222346799999999988876553 345556667777888888884
No 104
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=66.11 E-value=24 Score=32.16 Aligned_cols=47 Identities=26% Similarity=0.418 Sum_probs=39.9
Q ss_pred HhhhhHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHHHHHHhhcCC
Q 009074 270 ERRFLQGEMQQLRDRLAITERTAKSEAQLKEKYHLRLKVLEESLRGS 316 (544)
Q Consensus 270 ErR~LQGEmqrLrdKLAiaERtAkaEaQLKeK~~lRLk~LEe~lk~~ 316 (544)
+|--+.-|=+.|+-++|..|-..+.-..||..|.+|+|.||-.|+..
T Consensus 19 dR~~WeiERaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkqE 65 (134)
T PF08232_consen 19 DRNQWEIERAEMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQE 65 (134)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334555677889999999999999999999999999999999875
No 105
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=66.06 E-value=3.1e+02 Score=33.40 Aligned_cols=204 Identities=21% Similarity=0.295 Sum_probs=94.0
Q ss_pred hhhccHHHHHHHHHHHHHhhhchHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHhHHHHH
Q 009074 103 ILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKILDK 182 (544)
Q Consensus 103 iiApLeaelk~~r~Ei~kLqddnkaLerltksKEaALleAeR~v~~AlakA~~V~dlQN~N~EL~kQiEIcqEEnkiLdk 182 (544)
+|.-++-+|+....+|..+++-.+.++-+---++. -+-+..-++.|. |-+++++...+-.-|-.-|+.-..|..
T Consensus 229 ~i~~~~e~i~~l~k~i~e~~e~~~~~~~~e~~~~~-----l~~Lk~k~~W~~-V~~~~~ql~~~~~~i~~~qek~~~l~~ 302 (1074)
T KOG0250|consen 229 LIDLKEEEIKNLKKKIKEEEEKLDNLEQLEDLKEN-----LEQLKAKMAWAW-VNEVERQLNNQEEEIKKKQEKVDTLQE 302 (1074)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555544433221111 112333333333 234444444444445555555555554
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHhchh-----------hhhhhHHHHHHHHHHHHHhhhHHHHHhhhhhhhhhhhhhhh
Q 009074 183 MHRQKVAEVEKLTQTVRELEEAVLAGGA-----------AANAVRDYQRKVQEMNEERKTLDRELARAKVTANRVATVVA 251 (544)
Q Consensus 183 ~hRQKvaEVEKLtqTv~ELEEAvLagga-----------aaNAvrdyqrq~~elneEkrtLerELARaKv~AnRVA~vVA 251 (544)
--.-+...++-+.+.+-+.|.-|-.--. +--.|++|.|.+.++.++.+.-+...-..|...-+.--.++
T Consensus 303 ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~ 382 (1074)
T KOG0250|consen 303 KIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIA 382 (1074)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444333322111 11125555554444444444444444333333332222222
Q ss_pred hccccCCCCccch-------hhHHH-HhhhhHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHHHHHHh
Q 009074 252 NEWKDANDKVMPV-------KQWLE-ERRFLQGEMQQLRDRLAITERTAKSEAQLKEKYHLRLKVLEES 312 (544)
Q Consensus 252 nEWKDendkVmPV-------KqWLE-ErR~LQGEmqrLrdKLAiaERtAkaEaQLKeK~~lRLk~LEe~ 312 (544)
+.=++.|.-+=+- --||+ |+-=|++.+-+|++++.-.-..++.+-.=+++.+.++..|.-.
T Consensus 383 ~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~ 451 (1074)
T KOG0250|consen 383 DLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKK 451 (1074)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 2222221111110 12443 4445888889999998888777777766666665555554433
No 106
>PF15294 Leu_zip: Leucine zipper
Probab=65.83 E-value=33 Score=35.48 Aligned_cols=84 Identities=23% Similarity=0.225 Sum_probs=48.5
Q ss_pred chhccCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHhHHHHHHHHHHHHHHhhhccCCCCChhHHhhhcc
Q 009074 28 DFALNLPVFPKLTEELSKVEEKLKLAENLIETKNLEIKKINDEKRASMAAQFAAEATLRRVHAAQKDDDMPPIEAILAPL 107 (544)
Q Consensus 28 ~e~lKdKaveEl~~El~K~dEKLk~tE~lle~kNLEiKklndEKK~alAAQfAAEAtLRRvha~QKdddmppieaiiApL 107 (544)
+.+|..+-|..|.+|..++.++|+..|.+--..--|-++|+..=++.=. .++..+ -+.+..-+..++++++.-+|-+
T Consensus 126 ~~~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~--~~~~~~-~k~~~~~~~q~l~dLE~k~a~l 202 (278)
T PF15294_consen 126 GSELLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD--EQGDQK-GKKDLSFKAQDLSDLENKMAAL 202 (278)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhh-ccccccccccchhhHHHHHHHH
Confidence 3466778889999999999999999998866544344444333221111 111111 1123344556666666666665
Q ss_pred HHHHHHH
Q 009074 108 EAELKLA 114 (544)
Q Consensus 108 eaelk~~ 114 (544)
..++..+
T Consensus 203 K~e~ek~ 209 (278)
T PF15294_consen 203 KSELEKA 209 (278)
T ss_pred HHHHHHH
Confidence 5554433
No 107
>PF13166 AAA_13: AAA domain
Probab=65.74 E-value=2.1e+02 Score=31.21 Aligned_cols=140 Identities=16% Similarity=0.237 Sum_probs=63.0
Q ss_pred cHHHHHHHHHHHHHhhhchHHHHHHhhhHHHHHHH---HHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHhHHHHHH
Q 009074 107 LEAELKLARQEIAKLQDDNKALDRLTKSKEAALLE---AERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKILDKM 183 (544)
Q Consensus 107 Leaelk~~r~Ei~kLqddnkaLerltksKEaALle---AeR~v~~AlakA~~V~dlQN~N~EL~kQiEIcqEEnkiLdk~ 183 (544)
+..+...+...+..+.+....+...+..|-..... .+.+......-..+++++.+...+..+.+.-...+..-+.+.
T Consensus 320 ~~~~~~~~~~~~~~l~~~l~~l~~~L~~K~~~~~~~~~~~~~~~~~~~l~~~i~~~n~~i~~~n~~~~~~~~~~~~~~~~ 399 (712)
T PF13166_consen 320 FEEDKEELKSAIEALKEELEELKKALEKKIKNPSSPIELEEINEDIDELNSIIDELNELIEEHNEKIDNLKKEQNELKDK 399 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455555555665555555555555544322 122222223344555566655555555555554444444433
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhch----hhhhhhHHHHHHHHHHHHHhhhHHHHHhhhhhhhhhhhh
Q 009074 184 HRQKVAEVEKLTQTVRELEEAVLAGG----AAANAVRDYQRKVQEMNEERKTLDRELARAKVTANRVAT 248 (544)
Q Consensus 184 hRQKvaEVEKLtqTv~ELEEAvLagg----aaaNAvrdyqrq~~elneEkrtLerELARaKv~AnRVA~ 248 (544)
.+.. .+.++.+.+..+...+-.-. ..-.++..-+..+..++.+...|+.++.....+++++..
T Consensus 400 ~~~~--~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~iN~ 466 (712)
T PF13166_consen 400 LWLH--LIAKLKEDIEEYQKEIKELEKEINSLEKKLKKAKEEIKKIEKEIKELEAQLKNTEPAADRINE 466 (712)
T ss_pred HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3322 23344444332222221111 111123334455555555666666666555555555433
No 108
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=65.72 E-value=63 Score=33.75 Aligned_cols=97 Identities=24% Similarity=0.373 Sum_probs=69.3
Q ss_pred hhhccHHHHHHHHHHHHHhhhchHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHhHHHHH
Q 009074 103 ILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKILDK 182 (544)
Q Consensus 103 iiApLeaelk~~r~Ei~kLqddnkaLerltksKEaALleAeR~v~~AlakA~~V~dlQN~N~EL~kQiEIcqEEnkiLdk 182 (544)
...-||.+++...+||+.++..+..|+.-+..|+..|--|+-.+. |+++ .=-+|-|.+ .
T Consensus 259 ak~~Le~ql~~~~~ei~~~e~~i~~L~~ai~~k~~~lkvaqTRL~-------------~R~~--RP~vElcrD------~ 317 (384)
T PF03148_consen 259 AKNELEWQLKKTLQEIAEMEKNIEDLEKAIRDKEGPLKVAQTRLE-------------NRTQ--RPNVELCRD------P 317 (384)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHh-------------hHhc--CCchHHHHh------h
Confidence 445688888888888888888888888888888888877774433 3333 223445553 4
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHhchhhhhhhHHHHH
Q 009074 183 MHRQKVAEVEKLTQTVRELEEAVLAGGAAANAVRDYQR 220 (544)
Q Consensus 183 ~hRQKvaEVEKLtqTv~ELEEAvLaggaaaNAvrdyqr 220 (544)
.+..=+.||..|..++..|.+.+-.+-+.-|.+...+.
T Consensus 318 ~q~~L~~Ev~~l~~~i~~L~~~L~~a~~~l~~L~~~~~ 355 (384)
T PF03148_consen 318 PQYGLIEEVKELRESIEALQEKLDEAEASLQKLERTRL 355 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666789999999999999888776666665544443
No 109
>PRK01156 chromosome segregation protein; Provisional
Probab=64.49 E-value=2.5e+02 Score=31.76 Aligned_cols=243 Identities=14% Similarity=0.199 Sum_probs=0.0
Q ss_pred chhccCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHhHHHHHHHHHHHHHHhhhccCCCCChhHHhhhcc
Q 009074 28 DFALNLPVFPKLTEELSKVEEKLKLAENLIETKNLEIKKINDEKRASMAAQFAAEATLRRVHAAQKDDDMPPIEAILAPL 107 (544)
Q Consensus 28 ~e~lKdKaveEl~~El~K~dEKLk~tE~lle~kNLEiKklndEKK~alAAQfAAEAtLRRvha~QKdddmppieaiiApL 107 (544)
++.+++..+.+.+.++..+.+++.-+++.++..+-+++++....+.-.- -.+.+.+. ...-+-+|
T Consensus 463 ~~e~~~e~i~~~~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~~~l~~------~~~~~l~~---------~~~~~~~l 527 (895)
T PRK01156 463 GEEKSNHIINHYNEKKSRLEEKIREIEIEVKDIDEKIVDLKKRKEYLES------EEINKSIN---------EYNKIESA 527 (895)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH------hHHHHHHH---------HHHHHHHH
Q ss_pred HHHHHHHHHHHHHhhhchHHHHHHhhhHHH------------------------------HHHHHHHHHHHHHHHhhhhH
Q 009074 108 EAELKLARQEIAKLQDDNKALDRLTKSKEA------------------------------ALLEAERTVQVALAKASMVD 157 (544)
Q Consensus 108 eaelk~~r~Ei~kLqddnkaLerltksKEa------------------------------ALleAeR~v~~AlakA~~V~ 157 (544)
+.+|..+..++..|.++.+-+..+.+..+. .|-+....+..... -+.
T Consensus 528 ~~~l~~~~~~l~~le~~~~~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~l~~l~~---~l~ 604 (895)
T PRK01156 528 RADLEDIKIKINELKDKHDKYEEIKNRYKSLKLEDLDSKRTSWLNALAVISLIDIETNRSRSNEIKKQLNDLES---RLQ 604 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHhhHHHHHHHHHHHHHHHHHHHh---hHH
Q ss_pred Hhhh-----------hhHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHH
Q 009074 158 DLQN-----------KNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEAVLAGGAAANAVRDYQRKVQEMN 226 (544)
Q Consensus 158 dlQN-----------~N~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLtqTv~ELEEAvLaggaaaNAvrdyqrq~~eln 226 (544)
++++ ...+|...+..+.....-++.. -.+++++...+.++.+.+..-....+.+-.....+.++.
T Consensus 605 ~le~~~~~~~~~~~~~~~~le~~~~~le~~~~~l~~~----~~~i~~~~~~i~~l~~~i~~l~~~~~~~~~~~~~~~~~~ 680 (895)
T PRK01156 605 EIEIGFPDDKSYIDKSIREIENEANNLNNKYNEIQEN----KILIEKLRGKIDNYKKQIAEIDSIIPDLKEITSRINDIE 680 (895)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHH
Q ss_pred HHhhhHHHHHhhhhhhhhhhhhhhhhccccCCCCccchhhHHHHhhhhHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHH
Q 009074 227 EERKTLDRELARAKVTANRVATVVANEWKDANDKVMPVKQWLEERRFLQGEMQQLRDRLAITERTAKSEAQLKEKYHLRL 306 (544)
Q Consensus 227 eEkrtLerELARaKv~AnRVA~vVAnEWKDendkVmPVKqWLEErR~LQGEmqrLrdKLAiaERtAkaEaQLKeK~~lRL 306 (544)
.+...+..++...+...+ .+-.+..-+...+..++.++.-.++...--..+...+. .|
T Consensus 681 ~~~~~l~~~l~~l~~~~~---------------------~l~~~i~~l~~~~~~l~eel~~~~~~~~~l~~~~~~~~-~l 738 (895)
T PRK01156 681 DNLKKSRKALDDAKANRA---------------------RLESTIEILRTRINELSDRINDINETLESMKKIKKAIG-DL 738 (895)
T ss_pred HHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Q ss_pred HHHHHhhc
Q 009074 307 KVLEESLR 314 (544)
Q Consensus 307 k~LEe~lk 314 (544)
.-+-..|.
T Consensus 739 ~~~r~~l~ 746 (895)
T PRK01156 739 KRLREAFD 746 (895)
T ss_pred HHHHHHhh
No 110
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=64.15 E-value=82 Score=31.34 Aligned_cols=74 Identities=23% Similarity=0.319 Sum_probs=40.4
Q ss_pred hhHHhhhhhHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHHH
Q 009074 155 MVDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEAVLAGGAAANAVRDYQRKVQEMNEE 228 (544)
Q Consensus 155 ~V~dlQN~N~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLtqTv~ELEEAvLaggaaaNAvrdyqrq~~elneE 228 (544)
-|+|||+.|+.|.-+.--||-.--.++..+.+=-.|++.|-..++-+--++.-+-+.-.=+-|-..-+..++++
T Consensus 9 ~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~aK~l~eEledLk~~~~~lEE~ 82 (193)
T PF14662_consen 9 CVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKAKALEEELEDLKTLAKSLEEE 82 (193)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35777777777766666666666666666666556666665555555444443333333333333333333333
No 111
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=63.15 E-value=2.2e+02 Score=30.63 Aligned_cols=68 Identities=31% Similarity=0.426 Sum_probs=46.3
Q ss_pred HHHHHHHhhhchHHHHHHhhhHHHHHHHHHHHHHHHH-------HHhhhhHHhhhhhHHHHHHHHHHHHHhHHHHH-Hhh
Q 009074 114 ARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVAL-------AKASMVDDLQNKNQELMKQIEICQEENKILDK-MHR 185 (544)
Q Consensus 114 ~r~Ei~kLqddnkaLerltksKEaALleAeR~v~~Al-------akA~~V~dlQN~N~EL~kQiEIcqEEnkiLdk-~hR 185 (544)
...+|.--|+.||-||..-+.|=+...-.-.||+--. +-|-.|-|.|+|.+| ..||.++|++ +.|
T Consensus 12 L~kQiEIcqEENkiLdK~hRQKV~EVEKLsqTi~ELEEaiLagGaaaNavrdYqrq~~e-------lneEkrtLeRELAR 84 (351)
T PF07058_consen 12 LMKQIEICQEENKILDKMHRQKVLEVEKLSQTIRELEEAILAGGAAANAVRDYQRQVQE-------LNEEKRTLERELAR 84 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence 3457888999999999999999766555545554332 345555666655555 6799999986 445
Q ss_pred hHH
Q 009074 186 QKV 188 (544)
Q Consensus 186 QKv 188 (544)
-||
T Consensus 85 aKV 87 (351)
T PF07058_consen 85 AKV 87 (351)
T ss_pred hhh
Confidence 444
No 112
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=62.61 E-value=12 Score=35.98 Aligned_cols=53 Identities=34% Similarity=0.557 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHHHHhhhHHHHHhhhhhhhhhhhhhhhhccccCCCCccchhhHHHHhhhhHHHHHHHHHHHHHhHHhhhH
Q 009074 215 VRDYQRKVQEMNEERKTLDRELARAKVTANRVATVVANEWKDANDKVMPVKQWLEERRFLQGEMQQLRDRLAITERTAKS 294 (544)
Q Consensus 215 vrdyqrq~~elneEkrtLerELARaKv~AnRVA~vVAnEWKDendkVmPVKqWLEErR~LQGEmqrLrdKLAiaERtAka 294 (544)
+-||+.+...--|..-.||-|| .|+--|+-|.|||||.+ |-.|.
T Consensus 2 LeD~EsklN~AIERnalLE~EL--------------------------------dEKE~L~~~~QRLkDE~----RDLKq 45 (166)
T PF04880_consen 2 LEDFESKLNQAIERNALLESEL--------------------------------DEKENLREEVQRLKDEL----RDLKQ 45 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--------------------------------HHHHHHHHCH----------------
T ss_pred HHHHHHHHHHHHHHhHHHHHHH--------------------------------HHHHHHHHHHHHHHHHH----HHHHH
Confidence 5688888888888999999998 57778999999999997 57788
Q ss_pred HHHHHHHHH
Q 009074 295 EAQLKEKYH 303 (544)
Q Consensus 295 EaQLKeK~~ 303 (544)
|..++||++
T Consensus 46 El~V~ek~~ 54 (166)
T PF04880_consen 46 ELIVQEKLR 54 (166)
T ss_dssp ---------
T ss_pred HHHHHHHhh
Confidence 888888775
No 113
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=62.61 E-value=25 Score=38.62 Aligned_cols=27 Identities=26% Similarity=0.367 Sum_probs=16.7
Q ss_pred hHHhhhhhHHHHHHHHHHHHHhHHHHH
Q 009074 156 VDDLQNKNQELMKQIEICQEENKILDK 182 (544)
Q Consensus 156 V~dlQN~N~EL~kQiEIcqEEnkiLdk 182 (544)
+.+-|++..||.+||+..+-|..++.+
T Consensus 71 LteqQ~kasELEKqLaaLrqElq~~sa 97 (475)
T PRK13729 71 TTEMQVTAAQMQKQYEEIRRELDVLNK 97 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455677777888888776544433333
No 114
>COG2825 HlpA Outer membrane protein [Cell envelope biogenesis, outer membrane]
Probab=62.46 E-value=94 Score=29.51 Aligned_cols=88 Identities=28% Similarity=0.445 Sum_probs=50.5
Q ss_pred CChhHHhhhccHHHHHHHHHHHHHhhhchHHHHHHhhhH--HHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHH--HH
Q 009074 97 MPPIEAILAPLEAELKLARQEIAKLQDDNKALDRLTKSK--EAALLEAERTVQVALAKASMVDDLQNKNQELMKQI--EI 172 (544)
Q Consensus 97 mppieaiiApLeaelk~~r~Ei~kLqddnkaLerltksK--EaALleAeR~v~~AlakA~~V~dlQN~N~EL~kQi--EI 172 (544)
.|+-..+-++||++.+-+-.++.++|.+..++..-+... ..++.+.. .-+....+=-.+.+.+-+.++..+.+ ..
T Consensus 39 ~~~~k~~~~~le~~f~~~~~~lq~~~~el~~~~~kL~~~~~~~~~~d~~-k~e~~~~~~~~~~~~~~k~~~~~~~~~~~~ 117 (170)
T COG2825 39 SPQAKKVSADLESEFKKRQKELQKMQKELKAKEAKLQDDGKMEALSDRA-KAEAEIKKEKLVNAFNKKQQEYEKDLNRRE 117 (170)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455578889999999999999999999988887766542 11211111 11111222135566644444443333 33
Q ss_pred HHHHhHHHHHHhh
Q 009074 173 CQEENKILDKMHR 185 (544)
Q Consensus 173 cqEEnkiLdk~hR 185 (544)
.+++.++++++.|
T Consensus 118 ~e~~~~~~~~i~~ 130 (170)
T COG2825 118 AEEEQKLLEKIQR 130 (170)
T ss_pred HHHHHHHHHHHHH
Confidence 4455566655544
No 115
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=62.09 E-value=2.6e+02 Score=31.11 Aligned_cols=57 Identities=21% Similarity=0.221 Sum_probs=31.8
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHhhhh------------h---hhhhhhhhHHHHhHHHHHHHHHHHHHHhh
Q 009074 34 PVFPKLTEELSKVEEKLKLAENLIETK------------N---LEIKKINDEKRASMAAQFAAEATLRRVHA 90 (544)
Q Consensus 34 KaveEl~~El~K~dEKLk~tE~lle~k------------N---LEiKklndEKK~alAAQfAAEAtLRRvha 90 (544)
+|.+-|.+.+..+..+|...|..|+.- . -++..++.....+-+...+|++.+.-+..
T Consensus 194 ~a~~~L~~ql~~l~~~l~~aE~~l~~fk~~~~l~~~~~~~~~~~~L~~l~~ql~~a~~~~~~a~a~~~~l~~ 265 (754)
T TIGR01005 194 AAADFLAPEIADLSKQSRDAEAEVAAYRAQSDLLMGNNATLATQQLAELNTELSRARANRAAAEGTADSVKK 265 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555556666666655555544421 1 24666666666666656666766555543
No 116
>PRK10884 SH3 domain-containing protein; Provisional
Probab=61.69 E-value=1.4e+02 Score=29.23 Aligned_cols=59 Identities=19% Similarity=0.191 Sum_probs=37.3
Q ss_pred hhhHHhhhhhHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHH-----HHHHhchhhh
Q 009074 154 SMVDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELE-----EAVLAGGAAA 212 (544)
Q Consensus 154 ~~V~dlQN~N~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLtqTv~ELE-----EAvLaggaaa 212 (544)
.-..++|++..++..+|....+||.-|..-+-.--.|++.|.+....+. +-.+.||.++
T Consensus 118 ~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~~~wf~~Gg~v~ 181 (206)
T PRK10884 118 QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTIIMQWFMYGGGVA 181 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHH
Confidence 4456677777777777777788887776655555556666666655555 3444555444
No 117
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=61.65 E-value=25 Score=32.12 Aligned_cols=43 Identities=37% Similarity=0.520 Sum_probs=26.2
Q ss_pred hhhccCCCCChhHHhhhccHHHHHHHHHHHHHhhhchHHHHHHh
Q 009074 89 HAAQKDDDMPPIEAILAPLEAELKLARQEIAKLQDDNKALDRLT 132 (544)
Q Consensus 89 ha~QKdddmppieaiiApLeaelk~~r~Ei~kLqddnkaLerlt 132 (544)
|+.|.+-+.|+-+. ++.|..+|...+.++..|+.+.+.|..-+
T Consensus 60 ~~~Q~~~~~~s~ee-l~~ld~ei~~L~~el~~l~~~~k~l~~eL 102 (169)
T PF07106_consen 60 FANQDELEVPSPEE-LAELDAEIKELREELAELKKEVKSLEAEL 102 (169)
T ss_pred eeCccccCCCCchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666555444333 66777777777777777766666655443
No 118
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=61.26 E-value=3.5e+02 Score=32.26 Aligned_cols=87 Identities=34% Similarity=0.398 Sum_probs=57.3
Q ss_pred cHHHHHHH----HHHHHHhhhchHHHHHHhhhHHHHH---------------HHHHHHHHHHHH-HhhhhHHhhhhhHHH
Q 009074 107 LEAELKLA----RQEIAKLQDDNKALDRLTKSKEAAL---------------LEAERTVQVALA-KASMVDDLQNKNQEL 166 (544)
Q Consensus 107 Leaelk~~----r~Ei~kLqddnkaLerltksKEaAL---------------leAeR~v~~Ala-kA~~V~dlQN~N~EL 166 (544)
++.||-+| |-|++.|.-..|.|...++-+|.+- -..--.+|.-|. -.--.+.||++|.||
T Consensus 381 iq~EIALA~QplrsENaqLrRrLrilnqqlreqe~~~k~~~~~~~n~El~sLqSlN~~Lq~ql~es~k~~e~lq~kneel 460 (861)
T PF15254_consen 381 IQVEIALAMQPLRSENAQLRRRLRILNQQLREQEKAEKTSGSQDCNLELFSLQSLNMSLQNQLQESLKSQELLQSKNEEL 460 (861)
T ss_pred chhhhHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhcccCCCcccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHH
Confidence 44444444 4477777777788888887777653 111122222222 222358899999999
Q ss_pred HHHHHHHHHHhHHHHHHhhhHHHHHHH
Q 009074 167 MKQIEICQEENKILDKMHRQKVAEVEK 193 (544)
Q Consensus 167 ~kQiEIcqEEnkiLdk~hRQKvaEVEK 193 (544)
.|-||--.+|||=|.+|---|.-|+-+
T Consensus 461 lk~~e~q~~Enk~~~~~~~ekd~~l~~ 487 (861)
T PF15254_consen 461 LKVIENQKEENKRLRKMFQEKDQELLE 487 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999886555554443
No 119
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=61.09 E-value=2.3e+02 Score=32.41 Aligned_cols=78 Identities=21% Similarity=0.291 Sum_probs=46.4
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHhHHHHHHHHHHHHHHhhhccCCCCChhHHhhhccHHHHHH
Q 009074 34 PVFPKLTEELSKVEEKLKLAENLIETKNLEIKKINDEKRASMAAQFAAEATLRRVHAAQKDDDMPPIEAILAPLEAELKL 113 (544)
Q Consensus 34 KaveEl~~El~K~dEKLk~tE~lle~kNLEiKklndEKK~alAAQfAAEAtLRRvha~QKdddmppieaiiApLeaelk~ 113 (544)
|...++..++..+...|....+-.+..+.+++....++. .|+.+.- ..+.+...+.||+.....
T Consensus 175 k~~~~~~~~~~~~~~~l~~v~~~~~~~~~~l~~~~~~~~-~l~~~~~---------------~~~~~~~~~~~l~~~~~~ 238 (670)
T KOG0239|consen 175 KESLKLESDLGDLVTELEHVTNSISELESVLKSAQEERR-VLADSLG---------------NYADLRRNIKPLEGLEST 238 (670)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH-HHHHHhh---------------hhhhHHHhhhhhhhhhhH
Confidence 555566667777777777666667777777776444444 3333221 344555667777776666
Q ss_pred HHHHHHHhhhchHH
Q 009074 114 ARQEIAKLQDDNKA 127 (544)
Q Consensus 114 ~r~Ei~kLqddnka 127 (544)
.+++|..||.-...
T Consensus 239 ~~~~i~~l~~~l~~ 252 (670)
T KOG0239|consen 239 IKKKIQALQQELEE 252 (670)
T ss_pred HHHHHHHHHHHHHH
Confidence 66665555544443
No 120
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=61.02 E-value=3.1e+02 Score=31.65 Aligned_cols=137 Identities=19% Similarity=0.223 Sum_probs=79.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhc-hhhhhhhHHHHHHHHHHHHHhhhHHHHHhhhh--------hhhhhhhhhhh-hccc
Q 009074 186 QKVAEVEKLTQTVRELEEAVLAG-GAAANAVRDYQRKVQEMNEERKTLDRELARAK--------VTANRVATVVA-NEWK 255 (544)
Q Consensus 186 QKvaEVEKLtqTv~ELEEAvLag-gaaaNAvrdyqrq~~elneEkrtLerELARaK--------v~AnRVA~vVA-nEWK 255 (544)
||..||.+|+..|.-++.+..-- -.-+++|-+-.++......++.+|.+.|---+ +++=+ +.-.+ +++-
T Consensus 289 ~kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~~sDYeeIK~ELsiLk-~ief~~se~a 367 (629)
T KOG0963|consen 289 QKDSEIAQLSNDIERLEASLVEEREKHKAQISALEKELKAKISELEELKEKLNSRSDYEEIKKELSILK-AIEFGDSEEA 367 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHH-HhhcCCcccc
Confidence 47888888888888888776543 45566677777777777777777777663211 11111 11111 2222
Q ss_pred cCC-CCccchh-hHHHHhhhhHHHHHHHHHHHHHh-HHhhh-----HHHHHHHHHHHHH-HHHHHhhcCCCCCCCCC
Q 009074 256 DAN-DKVMPVK-QWLEERRFLQGEMQQLRDRLAIT-ERTAK-----SEAQLKEKYHLRL-KVLEESLRGSSNGSGRS 323 (544)
Q Consensus 256 Den-dkVmPVK-qWLEErR~LQGEmqrLrdKLAia-ERtAk-----aEaQLKeK~~lRL-k~LEe~lk~~~s~~~~~ 323 (544)
..+ +-+=|.. .-|+-=|+||.|.-.||-...-. .|-.+ .+.-.++--+.++ --||.+|..+.+.++++
T Consensus 368 ~~~~~~~~~leslLl~knr~lq~e~a~Lr~~n~~~~~~~~~~~~~~~el~~~~~~~ke~i~klE~dl~~~~~~~~~~ 444 (629)
T KOG0963|consen 368 NDEDETAKTLESLLLEKNRKLQNENASLRVANSGLSGRITELSKKGEELEAKATEQKELIAKLEQDLLKVQVSPPAE 444 (629)
T ss_pred cccccccchHHHHHHHHHhhhhHHHHHHhccccccchhHHHHHhhhhhhHHHHHHHHHHHHHHHhhHhhcccCCCCC
Confidence 222 2233443 45666789999999998664432 22222 2233344455666 77899988876544444
No 121
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=60.84 E-value=1.3e+02 Score=34.73 Aligned_cols=46 Identities=20% Similarity=0.413 Sum_probs=30.3
Q ss_pred hhhHHHHhhhhHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHHHH
Q 009074 264 VKQWLEERRFLQGEMQQLRDRLAITERTAKSEAQLKEKYHLRLKVL 309 (544)
Q Consensus 264 VKqWLEErR~LQGEmqrLrdKLAiaERtAkaEaQLKeK~~lRLk~L 309 (544)
..+.-++...+.+++|.|.+++...|+..+-.-+.-..|+..|+.+
T Consensus 386 ~~~~~~ek~~~~~e~q~L~ekl~~lek~~re~qeri~~LE~ELr~l 431 (717)
T PF09730_consen 386 EERYKQEKDRLESEVQNLKEKLMSLEKSSREDQERISELEKELRAL 431 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 3455556677889999999999998887665544444444444433
No 122
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=60.76 E-value=1.4e+02 Score=34.28 Aligned_cols=106 Identities=25% Similarity=0.283 Sum_probs=62.1
Q ss_pred hHHhhhccHHHHHHHHHHHHHhhhchHHHHHHhhhHHHHHHHHHH-------HHHHHHHHhhhhHHhhhhhHHHHHHHHH
Q 009074 100 IEAILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAER-------TVQVALAKASMVDDLQNKNQELMKQIEI 172 (544)
Q Consensus 100 ieaiiApLeaelk~~r~Ei~kLqddnkaLerltksKEaALleAeR-------~v~~AlakA~~V~dlQN~N~EL~kQiEI 172 (544)
.+--|-+|+.-++.+..||..|+.-+..+.+-+-.=++.|.++.+ +=+-.-++-.-++.|+-+.+|-.+.+|+
T Consensus 420 ~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~ 499 (652)
T COG2433 420 YEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEE 499 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555555555555555544444444433333333333322 2233334455667888888888888888
Q ss_pred HHHHhHHHHHHhh-------hHHHHHHHHHHH-HHHHHHHH
Q 009074 173 CQEENKILDKMHR-------QKVAEVEKLTQT-VRELEEAV 205 (544)
Q Consensus 173 cqEEnkiLdk~hR-------QKvaEVEKLtqT-v~ELEEAv 205 (544)
...+-.-|.+|.+ --|..|++||.+ |.++|+..
T Consensus 500 L~~~l~~l~k~~~lE~sG~g~pvk~ve~~t~~~Ie~~e~~~ 540 (652)
T COG2433 500 LERKLAELRKMRKLELSGKGTPVKVVEKLTLEAIEEAEEEY 540 (652)
T ss_pred HHHHHHHHHHHHhhhhcCCCcceehhhhhhHHHHHhHHHhh
Confidence 8877777777776 345788999977 56677653
No 123
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=60.55 E-value=32 Score=35.15 Aligned_cols=24 Identities=21% Similarity=0.530 Sum_probs=14.0
Q ss_pred hHHHHHHHHHHHHHhhhHHHHHhh
Q 009074 215 VRDYQRKVQEMNEERKTLDRELAR 238 (544)
Q Consensus 215 vrdyqrq~~elneEkrtLerELAR 238 (544)
+...+....++..|...|+.|+..
T Consensus 66 L~~LE~e~~~l~~el~~le~e~~~ 89 (314)
T PF04111_consen 66 LEELEKEREELDQELEELEEELEE 89 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555566666666666666644
No 124
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=60.27 E-value=1.9e+02 Score=28.82 Aligned_cols=42 Identities=17% Similarity=0.291 Sum_probs=25.3
Q ss_pred hhhhhHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHH
Q 009074 159 LQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRE 200 (544)
Q Consensus 159 lQN~N~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLtqTv~E 200 (544)
.....+||+.++..++++++--..-.+....-+..|-...+.
T Consensus 3 aEr~k~Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~ 44 (246)
T PF00769_consen 3 AEREKQELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQ 44 (246)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456678888888888888776554444444333333333333
No 125
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=60.25 E-value=49 Score=37.59 Aligned_cols=97 Identities=21% Similarity=0.240 Sum_probs=63.8
Q ss_pred CCCCChhHHhhhccHHHHHHHHHHHHHhh--hchHH-HHHHhhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHH
Q 009074 94 DDDMPPIEAILAPLEAELKLARQEIAKLQ--DDNKA-LDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQI 170 (544)
Q Consensus 94 dddmppieaiiApLeaelk~~r~Ei~kLq--ddnka-LerltksKEaALleAeR~v~~AlakA~~V~dlQN~N~EL~kQi 170 (544)
-+++--||.+|.-|+.=|..|=..|..+| +|.-. ++.|...-.. |..+|....+-+++|+
T Consensus 56 ~~~l~~ID~ai~~~l~lIe~~v~~ie~~q~r~di~~~~~dl~e~vsq-----------------m~~~vK~~L~~vK~qv 118 (683)
T PF08580_consen 56 REGLEEIDSAISRFLDLIEVYVSAIEDLQLREDIANSLFDLIEEVSQ-----------------MELDVKKTLISVKKQV 118 (683)
T ss_pred HHhHHHHHHHHHHHHHHHHhhccccccccccccccccHHHHHHHHHH-----------------HHHHHHHHHHHHHHHH
Confidence 34566788899999988888877777777 34332 4443322111 1126666777777888
Q ss_pred HHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh
Q 009074 171 EICQEENKILDKMHRQKVAEVEKLTQTVRELEEAVLA 207 (544)
Q Consensus 171 EIcqEEnkiLdk~hRQKvaEVEKLtqTv~ELEEAvLa 207 (544)
||.-|=+.|...+-=-=..||+.+.+.|-|+||-=.+
T Consensus 119 eiAmE~~EL~~~vlg~l~~EIe~~~~~vfemeE~R~~ 155 (683)
T PF08580_consen 119 EIAMEWEELWNDVLGDLDNEIEECIRLVFEMEEKRHS 155 (683)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 8877777777776666667777777777777765443
No 126
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=60.15 E-value=1.7e+02 Score=28.23 Aligned_cols=50 Identities=22% Similarity=0.297 Sum_probs=24.4
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHhchhh----hhhhHHHHHHHHHHHHHhhhH
Q 009074 183 MHRQKVAEVEKLTQTVRELEEAVLAGGAA----ANAVRDYQRKVQEMNEERKTL 232 (544)
Q Consensus 183 ~hRQKvaEVEKLtqTv~ELEEAvLaggaa----aNAvrdyqrq~~elneEkrtL 232 (544)
+.|.=..+.....+++..|+..+..--.. -+-++++++++.++...+.+|
T Consensus 86 LAr~Al~~k~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l 139 (219)
T TIGR02977 86 LARAALIEKQKAQELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKAL 139 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444454454444432111 122666677777776666655
No 127
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=60.10 E-value=3.3e+02 Score=31.70 Aligned_cols=110 Identities=27% Similarity=0.392 Sum_probs=76.2
Q ss_pred HHHHHHhhhccCCCCChhHHhhhccHHHHHHHHHHHHHhhhchHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhHHhhhh
Q 009074 83 ATLRRVHAAQKDDDMPPIEAILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNK 162 (544)
Q Consensus 83 AtLRRvha~QKdddmppieaiiApLeaelk~~r~Ei~kLqddnkaLerltksKEaALleAeR~v~~AlakA~~V~dlQN~ 162 (544)
||||-|=.+-|---=+.+-..=.-.|.|=.++-.-+.+|.-.-|+|- .|||-+..=|.|= |.=||+..-+
T Consensus 607 aTLRTVLKANKqTAEvALanLKsKYE~EK~~v~etm~kLRnELK~LK-----EDAATFsSlRamF-----a~RCdEYvtQ 676 (717)
T PF09730_consen 607 ATLRTVLKANKQTAEVALANLKSKYENEKAMVSETMMKLRNELKALK-----EDAATFSSLRAMF-----AARCDEYVTQ 676 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHH-----HHHHHHHHHH
Confidence 47787777766532222222223335555555555566665555552 3566666666553 5579999999
Q ss_pred hHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHH
Q 009074 163 NQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELE 202 (544)
Q Consensus 163 N~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLtqTv~ELE 202 (544)
..||.+|+.-..+|.|+|.-+.|.-|--==-|||-+.+||
T Consensus 677 ldemqrqL~aAEdEKKTLNsLLRmAIQQKLaLTQRLEdlE 716 (717)
T PF09730_consen 677 LDEMQRQLAAAEDEKKTLNSLLRMAIQQKLALTQRLEDLE 716 (717)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999977766566888877776
No 128
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=59.74 E-value=1.1e+02 Score=26.03 Aligned_cols=77 Identities=26% Similarity=0.267 Sum_probs=49.5
Q ss_pred ccHHHHHHHHHHHHHhhhchHHHH--HHhhhHHHHHHHHHHHHHHHHHH--hhhhHHhhhhhHHHHHHHHHHHHHhHHHH
Q 009074 106 PLEAELKLARQEIAKLQDDNKALD--RLTKSKEAALLEAERTVQVALAK--ASMVDDLQNKNQELMKQIEICQEENKILD 181 (544)
Q Consensus 106 pLeaelk~~r~Ei~kLqddnkaLe--rltksKEaALleAeR~v~~Alak--A~~V~dlQN~N~EL~kQiEIcqEEnkiLd 181 (544)
.+..++...+.++..|+...|-+. -|--..=..|...|..|..|+.+ +....=+.+++..|.++...+++||..|.
T Consensus 16 ~~~~e~~~L~~~~~~L~~~~R~~~GedL~~Ls~~eL~~LE~~Le~aL~~VR~rK~~~l~~~i~~l~~ke~~l~~en~~L~ 95 (100)
T PF01486_consen 16 ELQQEIAKLRKENESLQKELRHLMGEDLESLSLKELQQLEQQLESALKRVRSRKDQLLMEQIEELKKKERELEEENNQLR 95 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555553333221 11122224567778888888864 44556778899999999999999999875
Q ss_pred H
Q 009074 182 K 182 (544)
Q Consensus 182 k 182 (544)
+
T Consensus 96 ~ 96 (100)
T PF01486_consen 96 Q 96 (100)
T ss_pred H
Confidence 4
No 129
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=59.53 E-value=3 Score=45.97 Aligned_cols=18 Identities=22% Similarity=0.501 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhHHH
Q 009074 217 DYQRKVQEMNEERKTLDR 234 (544)
Q Consensus 217 dyqrq~~elneEkrtLer 234 (544)
+++.++..|.+|...++.
T Consensus 243 ~l~~ql~~L~~el~~~e~ 260 (713)
T PF05622_consen 243 DLRAQLRRLREELERLEE 260 (713)
T ss_dssp ------------------
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445555555555444443
No 130
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=59.25 E-value=53 Score=34.96 Aligned_cols=49 Identities=20% Similarity=0.306 Sum_probs=35.2
Q ss_pred ccchhhHHHHhhhhHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHHHHHHhhcCC
Q 009074 261 VMPVKQWLEERRFLQGEMQQLRDRLAITERTAKSEAQLKEKYHLRLKVLEESLRGS 316 (544)
Q Consensus 261 VmPVKqWLEErR~LQGEmqrLrdKLAiaERtAkaEaQLKeK~~lRLk~LEe~lk~~ 316 (544)
..++.+|.+--.|+..++..|+..+.-+++.- +.++.+|..|+..|...
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~~l~~~l~~l 171 (525)
T TIGR02231 123 EPDLKEWFQAFDFNGSEIERLLTEDREAERRI-------RELEKQLSELQNELNAL 171 (525)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhh
Confidence 35889999999999999999998776555443 34555555666665544
No 131
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=59.07 E-value=1.4e+02 Score=27.67 Aligned_cols=84 Identities=19% Similarity=0.337 Sum_probs=48.3
Q ss_pred hhchHHHHHHhhhHHHHHHHHHHHHHHHHHHhh-----hhHHhhhhhHHHHHHHHHHHHH--hHHHHHHhhhHHHHHHHH
Q 009074 122 QDDNKALDRLTKSKEAALLEAERTVQVALAKAS-----MVDDLQNKNQELMKQIEICQEE--NKILDKMHRQKVAEVEKL 194 (544)
Q Consensus 122 qddnkaLerltksKEaALleAeR~v~~AlakA~-----~V~dlQN~N~EL~kQiEIcqEE--nkiLdk~hRQKvaEVEKL 194 (544)
++-.+.++.|.+-=|..=-.+...+....+.+. +|+++.++...-...+|..=++ +.+|.++.=-.-.||+.|
T Consensus 35 ~EG~k~F~~LVk~Ge~~e~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~dklE~~fd~rV~~aL~rLgvPs~~dv~~L 114 (132)
T PF05597_consen 35 EEGSKVFEALVKEGEKLEKKTRKKAEEQVEEARDQVKSRVDDVKERATGQWDKLEQAFDERVARALNRLGVPSRKDVEAL 114 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 345667777777666655555555555555444 5555555555544445544443 455555555555666777
Q ss_pred HHHHHHHHHHH
Q 009074 195 TQTVRELEEAV 205 (544)
Q Consensus 195 tqTv~ELEEAv 205 (544)
+.-|.+|+..|
T Consensus 115 ~~rId~L~~~v 125 (132)
T PF05597_consen 115 SARIDQLTAQV 125 (132)
T ss_pred HHHHHHHHHHH
Confidence 76666666554
No 132
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=59.04 E-value=92 Score=24.93 Aligned_cols=78 Identities=22% Similarity=0.365 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhhhhhhhhccccchhccCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHhHHHHHHHHHH
Q 009074 5 ISNLLCSLFFAMSKITILCSMGADFALNLPVFPKLTEELSKVEEKLKLAENLIETKNLEIKKINDEKRASMAAQFAAEAT 84 (544)
Q Consensus 5 ~~~~~~~l~~A~sei~~lkv~~~~e~lKdKaveEl~~El~K~dEKLk~tE~lle~kNLEiKklndEKK~alAAQfAAEAt 84 (544)
+.+++-.+...+..|.++.- ++-..-+..++..|.-.+.+|.++.+|+.-+..--|
T Consensus 1 f~~l~~~i~~~l~~~~~~~~------------~~r~~~i~~~e~~l~ea~~~l~qMe~E~~~~p~s~r------------ 56 (79)
T PF05008_consen 1 FQALTAEIKSKLERIKNLSG------------EQRKSLIREIERDLDEAEELLKQMELEVRSLPPSER------------ 56 (79)
T ss_dssp HHHHHHHHHHHHHHGGGS-C------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-HHHH------------
T ss_pred CHHHHHHHHHHHHHhhccCh------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHH------------
Q ss_pred HHHHhhhccCCCCChhHHhhhccHHHHHHHHHHHHHhhhchH
Q 009074 85 LRRVHAAQKDDDMPPIEAILAPLEAELKLARQEIAKLQDDNK 126 (544)
Q Consensus 85 LRRvha~QKdddmppieaiiApLeaelk~~r~Ei~kLqddnk 126 (544)
.++...|+.||+++.+|+.+.+
T Consensus 57 --------------------~~~~~kl~~yr~~l~~lk~~l~ 78 (79)
T PF05008_consen 57 --------------------NQYKSKLRSYRSELKKLKKELK 78 (79)
T ss_dssp --------------------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------------------HHHHHHHHHHHHHHHHHHHHhc
No 133
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=58.97 E-value=2.4e+02 Score=30.63 Aligned_cols=53 Identities=21% Similarity=0.345 Sum_probs=44.0
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHhc-hhhhhhhHHHHHHHHHHHHHhhhHHHHHh
Q 009074 182 KMHRQKVAEVEKLTQTVRELEEAVLAG-GAAANAVRDYQRKVQEMNEERKTLDRELA 237 (544)
Q Consensus 182 k~hRQKvaEVEKLtqTv~ELEEAvLag-gaaaNAvrdyqrq~~elneEkrtLerELA 237 (544)
+|+.+++ .-|...+.+|+.||-.+ |.+.=++-.|-.++.+++-+.++|+..+.
T Consensus 151 ~l~~~~~---~sL~ekl~lld~al~~~~~~~~~~~~~fl~rtl~~e~~~~~L~~~~~ 204 (511)
T PF09787_consen 151 RLQNGAP---RSLQEKLSLLDEALKREDGNAITAVVEFLKRTLKKEIERQELEERPK 204 (511)
T ss_pred HHHHHHH---hhHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455554 78888899999999985 88888899999999999999999988775
No 134
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=58.69 E-value=1.2e+02 Score=28.80 Aligned_cols=79 Identities=24% Similarity=0.357 Sum_probs=49.9
Q ss_pred CChhHHhhhccHHH---HHHHHHHHHHhhhchHHHHHHhhhHHHHHHHHHHHHHHHHHHhhh--hHHhhhhhHHHHHHHH
Q 009074 97 MPPIEAILAPLEAE---LKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASM--VDDLQNKNQELMKQIE 171 (544)
Q Consensus 97 mppieaiiApLeae---lk~~r~Ei~kLqddnkaLerltksKEaALleAeR~v~~AlakA~~--V~dlQN~N~EL~kQiE 171 (544)
||-+=.++--||+= -.....|+..|++||.-|....+. |++ .+-..+.-.+ =|.+...+++|..||+
T Consensus 28 mP~VV~vLE~Le~~~~~n~~~~~e~~~L~~d~e~L~~q~~~-ek~-------~r~~~e~~l~~~Ed~~~~e~k~L~~~v~ 99 (158)
T PF09744_consen 28 MPKVVRVLELLESLASRNQEHEVELELLREDNEQLETQYER-EKE-------LRKQAEEELLELEDQWRQERKDLQSQVE 99 (158)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHH-HHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56555555555543 233445677888888877765543 222 2222222111 2677889999999999
Q ss_pred HHHHHhHHHHHH
Q 009074 172 ICQEENKILDKM 183 (544)
Q Consensus 172 IcqEEnkiLdk~ 183 (544)
.++++|+-|...
T Consensus 100 ~Le~e~r~L~~~ 111 (158)
T PF09744_consen 100 QLEEENRQLELK 111 (158)
T ss_pred HHHHHHHHHHHH
Confidence 999999988843
No 135
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=57.35 E-value=1.8e+02 Score=27.78 Aligned_cols=60 Identities=18% Similarity=0.222 Sum_probs=41.8
Q ss_pred hhhhHHhhhhhHHHHHHHHH-HHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhchhhhhhh
Q 009074 153 ASMVDDLQNKNQELMKQIEI-CQEENKILDKMHRQKVAEVEKLTQTVRELEEAVLAGGAAANAV 215 (544)
Q Consensus 153 A~~V~dlQN~N~EL~kQiEI-cqEEnkiLdk~hRQKvaEVEKLtqTv~ELEEAvLaggaaaNAv 215 (544)
|....+..+-..+|+.-|+. .++=+++-+.+.+++.-|+-+|+..|. +-+.-+-|-.|-+
T Consensus 91 a~~~~~~~~~ea~L~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~---~k~~~~~~~~~~~ 151 (155)
T PRK06569 91 SEFLIKKKNLEQDLKNSINQNIEDINLAAKQFRTNKSEAIIKLAVNII---EKIAGTKADMNLL 151 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH---HHHhCccccHHHH
Confidence 34456666667777777665 345567778999999999999999998 4444445555543
No 136
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=57.26 E-value=1.8e+02 Score=28.10 Aligned_cols=78 Identities=17% Similarity=0.304 Sum_probs=41.4
Q ss_pred hhhhhHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHHHhhhHHHHH
Q 009074 159 LQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEAVLAGGAAANAVRDYQRKVQEMNEERKTLDREL 236 (544)
Q Consensus 159 lQN~N~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLtqTv~ELEEAvLaggaaaNAvrdyqrq~~elneEkrtLerEL 236 (544)
+.-+-....+.+...+.||+-|..-..+-..||+.|...+...+-.-.+-..+=.-+...+.++..|.+|-..|+.-+
T Consensus 39 mkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~ 116 (201)
T PF13851_consen 39 MKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRF 116 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444555555566666666655666666666666665554333222222225555666666666666655544
No 137
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=56.94 E-value=3.6 Score=46.91 Aligned_cols=189 Identities=25% Similarity=0.356 Sum_probs=0.0
Q ss_pred hhhccHHHHHHHHHHHHHhhhchHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHhHHHHH
Q 009074 103 ILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKILDK 182 (544)
Q Consensus 103 iiApLeaelk~~r~Ei~kLqddnkaLerltksKEaALleAeR~v~~AlakA~~V~dlQN~N~EL~kQiEIcqEEnkiLdk 182 (544)
.++-|+-.|+-+...|.-|++| +++||..+.=.+|+- .||+...-+|..+++........--.
T Consensus 33 ~~~~l~k~~kelq~~i~el~ee---------------Le~Er~~R~kaek~r--~dL~~ELe~l~~~Lee~~~~t~aq~E 95 (859)
T PF01576_consen 33 LRAQLQKKIKELQARIEELEEE---------------LESERQARAKAEKQR--RDLSEELEELKERLEEAGGATQAQIE 95 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhCcHHhhHH
Confidence 5667777788888888888887 788887775444332 58888889999999998888888888
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHhchhhhhhh-HHHHHHHHHHHHHhhhHHHHHhhh---hhhhhhhhhhhhhccccCC
Q 009074 183 MHRQKVAEVEKLTQTVRELEEAVLAGGAAANAV-RDYQRKVQEMNEERKTLDRELARA---KVTANRVATVVANEWKDAN 258 (544)
Q Consensus 183 ~hRQKvaEVEKLtqTv~ELEEAvLaggaaaNAv-rdyqrq~~elneEkrtLerELARa---Kv~AnRVA~vVAnEWKDen 258 (544)
+++.+.+|+.+|. ++||++.+..-+++..+ +.|...+.+|+++.-.|.+.-+.+ |.....-. .+-...-
T Consensus 96 ~~kkrE~El~~Lr---r~LEe~~~~~e~~~~~lrkkh~~~~~eL~eqle~lqk~k~~lEK~k~~l~~e~----~dL~~~l 168 (859)
T PF01576_consen 96 LNKKREAELAKLR---RDLEEANLQHEATLAELRKKHQDAVAELNEQLEQLQKQKAKLEKEKSQLEAEL----DDLQAQL 168 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH----HHHHHHH
Confidence 9999999999996 45788888765555555 556667777777666554432211 11111000 1111111
Q ss_pred CCccchhhHHHH-hhhhHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHHHHHHhhcC
Q 009074 259 DKVMPVKQWLEE-RRFLQGEMQQLRDRLAITERTAKSEAQLKEKYHLRLKVLEESLRG 315 (544)
Q Consensus 259 dkVmPVKqWLEE-rR~LQGEmqrLrdKLAiaERtAkaEaQLKeK~~lRLk~LEe~lk~ 315 (544)
|.+..-|.=.|. ++-+...+..|+-|+.-.+|...--...+.||+-.+..|--.|-.
T Consensus 169 ~~~~k~k~~~Ek~~K~lE~qL~El~~klee~er~~~el~~~k~kL~~E~~eL~~qLee 226 (859)
T PF01576_consen 169 DSLQKAKQEAEKKRKQLEAQLNELQAKLEESERQRNELTEQKAKLQSENSELTRQLEE 226 (859)
T ss_dssp ----------------------------------------------------------
T ss_pred HHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222333334433 566889999999999999998887777788877777665544433
No 138
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=56.77 E-value=79 Score=26.36 Aligned_cols=65 Identities=28% Similarity=0.356 Sum_probs=39.5
Q ss_pred hHHhhhccHHHHHHHHHHHHHhhhchHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHH
Q 009074 100 IEAILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQ 174 (544)
Q Consensus 100 ieaiiApLeaelk~~r~Ei~kLqddnkaLerltksKEaALleAeR~v~~AlakA~~V~dlQN~N~EL~kQiEIcq 174 (544)
+++-++.|...|..+-..+.+.+..++.|-+ -.+ .+.+.+.+|. .=+.+|...|..|.++++.|.
T Consensus 3 Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~---ERd----~~~~~l~~a~---~e~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 3 LEAEIATLRNRLDSLTRKNSVHEIENKRLRR---ERD----SAERQLGDAY---EENNKLKEENEALRKELEELR 67 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH----HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhh
Confidence 5667777777777777777777777766544 222 2223333332 234667777777777766654
No 139
>PF14992 TMCO5: TMCO5 family
Probab=56.66 E-value=1.8e+02 Score=30.31 Aligned_cols=33 Identities=27% Similarity=0.544 Sum_probs=25.5
Q ss_pred chhhhhhhHHHHHHHHHHHHHhhh--HHHHHhhhh
Q 009074 208 GGAAANAVRDYQRKVQEMNEERKT--LDRELARAK 240 (544)
Q Consensus 208 ggaaaNAvrdyqrq~~elneEkrt--LerELARaK 240 (544)
...++|.++-|+.++..|.+++-+ |++|+..+-
T Consensus 146 ~eDq~~~i~klkE~L~rmE~ekE~~lLe~el~k~q 180 (280)
T PF14992_consen 146 CEDQANEIKKLKEKLRRMEEEKEMLLLEKELSKYQ 180 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356899999999999888887655 677775543
No 140
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=56.46 E-value=1e+02 Score=27.06 Aligned_cols=49 Identities=12% Similarity=0.215 Sum_probs=41.9
Q ss_pred hhhHHhhhhhHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHH
Q 009074 154 SMVDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELE 202 (544)
Q Consensus 154 ~~V~dlQN~N~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLtqTv~ELE 202 (544)
+.+..++..+.++.++|.-.+.+|.-+-..++.++.|+..|+.....-.
T Consensus 3 ~~~~~~~~~~~~l~~~L~~v~~~~l~l~~~n~el~~el~~l~~~~~~~~ 51 (106)
T PF05837_consen 3 LEILNLQQESRSLQEKLSDVEKKRLRLKRRNQELAQELLELAEKQKSQR 51 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 3467788999999999999999999999999999999998887765543
No 141
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=55.75 E-value=3.6e+02 Score=30.69 Aligned_cols=139 Identities=23% Similarity=0.366 Sum_probs=80.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHH----hhhhhhhhhhhhhHHHHhHHHHHHHHHHHHHHhh---hccCCCCC--hhHHhhhc
Q 009074 36 FPKLTEELSKVEEKLKLAENL----IETKNLEIKKINDEKRASMAAQFAAEATLRRVHA---AQKDDDMP--PIEAILAP 106 (544)
Q Consensus 36 veEl~~El~K~dEKLk~tE~l----le~kNLEiKklndEKK~alAAQfAAEAtLRRvha---~QKdddmp--pieaiiAp 106 (544)
|.+|..|....-++|+-.-.. +.++.-++..+..||+..+.=----|..|-.+-. .....+.| |-+.- --
T Consensus 6 l~qlq~Erd~ya~~lk~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~~~pa~pse~E-~~ 84 (617)
T PF15070_consen 6 LKQLQAERDQYAQQLKEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPPPPEPPAGPSEVE-QQ 84 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccccccchHHH-HH
Confidence 344555555555555433322 3344556677777777554433333333322211 11111111 22221 12
Q ss_pred cHHHHHHHHHHHH-------HhhhchHHHHHHhhhHHHHHHHHHHHHHHH----HHHhhhhHHhh----------hhhHH
Q 009074 107 LEAELKLARQEIA-------KLQDDNKALDRLTKSKEAALLEAERTVQVA----LAKASMVDDLQ----------NKNQE 165 (544)
Q Consensus 107 Leaelk~~r~Ei~-------kLqddnkaLerltksKEaALleAeR~v~~A----lakA~~V~dlQ----------N~N~E 165 (544)
|++++...+.|+. ..-.+|..|.+|...+|..|.+.|+.++.- -....+++++| .+|.+
T Consensus 85 Lq~E~~~L~kElE~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~e 164 (617)
T PF15070_consen 85 LQAEAEHLRKELESLEEQLQAQVENNEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQNRE 164 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhHHH
Confidence 3444455555554 444578889999999999999999887654 34567777777 48999
Q ss_pred HHHHHHHHHH
Q 009074 166 LMKQIEICQE 175 (544)
Q Consensus 166 L~kQiEIcqE 175 (544)
|+.|+...|+
T Consensus 165 LK~QL~Elq~ 174 (617)
T PF15070_consen 165 LKEQLAELQD 174 (617)
T ss_pred HHHHHHHHHH
Confidence 9999998887
No 142
>PRK10780 periplasmic chaperone; Provisional
Probab=55.62 E-value=1.7e+02 Score=26.97 Aligned_cols=74 Identities=16% Similarity=0.269 Sum_probs=47.9
Q ss_pred CCCChhHHhhhccHHHHHHHHHHHHHhhhchHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHH
Q 009074 95 DDMPPIEAILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQ 174 (544)
Q Consensus 95 ddmppieaiiApLeaelk~~r~Ei~kLqddnkaLerltksKEaALleAeR~v~~AlakA~~V~dlQN~N~EL~kQiEIcq 174 (544)
..+|.+..+-+-||.+.+.+..++..++.+...+..-...+.+.+-++++.-. =.+|+++.+++.+.....+
T Consensus 36 ~~~p~~k~~~~~le~~~~~~q~el~~~~~elq~~~~~~q~~~~~ms~~~~~~~--------~~el~~~~~~~q~~~~~~q 107 (165)
T PRK10780 36 QQVPQRTGVSKQLENEFKGRASELQRMETDLQAKMQKLQRDGSTMKGSDRTKL--------EKDVMAQRQTFSQKAQAFE 107 (165)
T ss_pred HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHH--------HHHHHHHHHHHHHHHHHHH
Confidence 45788888888899999999888888888877766666655555555553322 2234444455555554444
Q ss_pred HH
Q 009074 175 EE 176 (544)
Q Consensus 175 EE 176 (544)
++
T Consensus 108 q~ 109 (165)
T PRK10780 108 QD 109 (165)
T ss_pred HH
Confidence 43
No 143
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=55.04 E-value=64 Score=26.88 Aligned_cols=27 Identities=26% Similarity=0.412 Sum_probs=23.1
Q ss_pred hHHhhhhhHHHHHHHHHHHHHhHHHHH
Q 009074 156 VDDLQNKNQELMKQIEICQEENKILDK 182 (544)
Q Consensus 156 V~dlQN~N~EL~kQiEIcqEEnkiLdk 182 (544)
|.-|||++--+-++++.++.+|+.|-.
T Consensus 7 ~~~Lr~rLd~~~rk~~~~~~~~k~L~~ 33 (69)
T PF14197_consen 7 IATLRNRLDSLTRKNSVHEIENKRLRR 33 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566899999999999999999988865
No 144
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=54.64 E-value=79 Score=33.70 Aligned_cols=33 Identities=27% Similarity=0.353 Sum_probs=27.3
Q ss_pred hHHhhhccHHHHHHHHHHHHHhhhchHHHHHHh
Q 009074 100 IEAILAPLEAELKLARQEIAKLQDDNKALDRLT 132 (544)
Q Consensus 100 ieaiiApLeaelk~~r~Ei~kLqddnkaLerlt 132 (544)
...-|+.|+.+|+.++.+++.+++.+.+++..+
T Consensus 69 ~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~ 101 (525)
T TIGR02231 69 DPERLAELRKQIRELEAELRDLEDRGDALKALA 101 (525)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344788899999999999999999888887665
No 145
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=54.24 E-value=1.9e+02 Score=27.19 Aligned_cols=162 Identities=18% Similarity=0.300 Sum_probs=80.0
Q ss_pred HhhhchHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhh----HHhhhhhHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHH
Q 009074 120 KLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMV----DDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLT 195 (544)
Q Consensus 120 kLqddnkaLerltksKEaALleAeR~v~~AlakA~~V----~dlQN~N~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLt 195 (544)
++.|-.+.|+..++.=+..|..+...|-.+.+..-.. ++++....++.++.+.+-... =+.+.|.=..+...+.
T Consensus 20 ~~EDP~~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g--~edLAr~al~~k~~~e 97 (221)
T PF04012_consen 20 KAEDPEKMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAG--REDLAREALQRKADLE 97 (221)
T ss_pred hhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555544444433222 344444444444444443222 1233444444444555
Q ss_pred HHHHHHHHHHHhchhhh----hhhHHHHHHHHHHHHHhhhHHHHHhhhhhhhhhhhhhhhhccccCCCCccchhhHHHHh
Q 009074 196 QTVRELEEAVLAGGAAA----NAVRDYQRKVQEMNEERKTLDRELARAKVTANRVATVVANEWKDANDKVMPVKQWLEER 271 (544)
Q Consensus 196 qTv~ELEEAvLaggaaa----NAvrdyqrq~~elneEkrtLerELARaKv~AnRVA~vVAnEWKDendkVmPVKqWLEEr 271 (544)
..+..|+..+-...... +.+.....++.+|..++.+|---..++++... |..+..+-- .+.
T Consensus 98 ~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~a~~~-~~~~~~~~~---~~~----------- 162 (221)
T PF04012_consen 98 EQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAAKAQKK-VNEALASFS---VSS----------- 162 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhccCC---ccc-----------
Confidence 55555554444332222 23555666777777777766554444443322 111111100 111
Q ss_pred hhhHHHHHHHHHHHHHhHHhhhHHHHHHH
Q 009074 272 RFLQGEMQQLRDRLAITERTAKSEAQLKE 300 (544)
Q Consensus 272 R~LQGEmqrLrdKLAiaERtAkaEaQLKe 300 (544)
....+.++++++...|-.+.+-..|.+
T Consensus 163 --a~~~~er~e~ki~~~ea~a~a~~el~~ 189 (221)
T PF04012_consen 163 --AMDSFERMEEKIEEMEARAEASAELAD 189 (221)
T ss_pred --hHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 234567888888888888888887774
No 146
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=53.97 E-value=4.8e+02 Score=31.61 Aligned_cols=180 Identities=22% Similarity=0.274 Sum_probs=100.0
Q ss_pred cCCchhhhHHHHHHHHHHHHHHHHHhh-------hhhhhhhhhhhHHHHhHHH-------HHHHHHHHHHHhhhccCCCC
Q 009074 32 NLPVFPKLTEELSKVEEKLKLAENLIE-------TKNLEIKKINDEKRASMAA-------QFAAEATLRRVHAAQKDDDM 97 (544)
Q Consensus 32 KdKaveEl~~El~K~dEKLk~tE~lle-------~kNLEiKklndEKK~alAA-------QfAAEAtLRRvha~QKdddm 97 (544)
+++-+.||+.++.-|-++..+-+.-++ ..+.++.-.-.--+.-.+| ..++|-+.-|.
T Consensus 625 ~~q~~~EL~~q~~~L~ee~~af~~~v~~l~~~~e~~~~~ls~~~~~~r~~~~~e~~~Ee~r~~le~~~~~t--------- 695 (984)
T COG4717 625 LMQKKAELTHQVARLREEQAAFEERVEGLLAVLEAQFIDLSTLFCVQRLRVAAELQKEEARLALEGNIERT--------- 695 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccchhHHHHHHHHHHHHHHHhhHHHHHHHhhhHHHH---------
Confidence 566778899888888888777666544 2333332221111111111 11222221111
Q ss_pred ChhHHhhhccHHHHHHHHHHHHHhhhchH-----------HHHHHhhhHHHHHHHHHHHHH--HHHHHhhhhHHhhhhhH
Q 009074 98 PPIEAILAPLEAELKLARQEIAKLQDDNK-----------ALDRLTKSKEAALLEAERTVQ--VALAKASMVDDLQNKNQ 164 (544)
Q Consensus 98 ppieaiiApLeaelk~~r~Ei~kLqddnk-----------aLerltksKEaALleAeR~v~--~AlakA~~V~dlQN~N~ 164 (544)
....--|++++...+.||..|=|-.. .-++..++-+..+.+++..++ .+.++++.++..|-..-
T Consensus 696 ---~El~~~L~ae~~~~~kei~dLfd~~~~~~ed~F~e~A~~~qq~~q~~srl~~~~aql~~v~~~~~eL~~~~~~~~~~ 772 (984)
T COG4717 696 ---KELNDELRAELELHRKEILDLFDCGTADTEDAFREAAREEQQLTQRESRLESLEAQLEGVAAEAYELSASLDQRELK 772 (984)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHhhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHhhhhhhhhhhh
Confidence 12334689999999999998865432 234556667777777777677 56666666654443222
Q ss_pred HHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHH---HhchhhhhhhHHHHHHHHHHHHHhhhH
Q 009074 165 ELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEAV---LAGGAAANAVRDYQRKVQEMNEERKTL 232 (544)
Q Consensus 165 EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLtqTv~ELEEAv---LaggaaaNAvrdyqrq~~elneEkrtL 232 (544)
.+|+..|+..----.-||+.+...|+-+.-.| ..||..||+-.+|.+....|++--+-|
T Consensus 773 ---------e~E~~~lEe~~d~~~ee~~el~a~v~~~~~qi~~lE~g~~~a~lr~~~~slk~~l~e~ar~W 834 (984)
T COG4717 773 ---------EEELALLEEAIDALDEEVEELHAQVAALSRQIAQLEGGGTVAELRQRRESLKEDLEEKARKW 834 (984)
T ss_pred ---------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 23333333222222234445555555544333 358999999888988888887755444
No 147
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=53.57 E-value=3e+02 Score=29.12 Aligned_cols=175 Identities=25% Similarity=0.331 Sum_probs=119.6
Q ss_pred HHHHHhhhchHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHH
Q 009074 116 QEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLT 195 (544)
Q Consensus 116 ~Ei~kLqddnkaLerltksKEaALleAeR~v~~AlakA~~V~dlQN~N~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLt 195 (544)
-.+.|..+|+.|+-+|+.-||+-|.-|.||=++-| -+|+.|+ +.|..|+...+..-.+|.-|.
T Consensus 55 ~qmtkty~Didavt~lLeEkerDLelaA~iGqsLl----------~~N~~L~-------~~~~~le~~L~~~~e~v~qLr 117 (306)
T PF04849_consen 55 SQMTKTYNDIDAVTRLLEEKERDLELAARIGQSLL----------EQNQDLS-------ERNEALEEQLGAALEQVEQLR 117 (306)
T ss_pred hhhhcchhhHHHHHHHHHHHhhhHHHHHHHhHHHH----------HhcccHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999988877644 4566665 566667777788888888888
Q ss_pred HHHHHHHHHHHh------------chh-----------hhhh--hHHHHHHHHHHHHHhhhHHHHHhhhhhhhhh-----
Q 009074 196 QTVRELEEAVLA------------GGA-----------AANA--VRDYQRKVQEMNEERKTLDRELARAKVTANR----- 245 (544)
Q Consensus 196 qTv~ELEEAvLa------------gga-----------aaNA--vrdyqrq~~elneEkrtLerELARaKv~AnR----- 245 (544)
|.+.-=.+-+.- ++. .-+. +-..|+|+..|.+|...|..|-++-+--.--
T Consensus 118 HeL~~kdeLL~~ys~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekE 197 (306)
T PF04849_consen 118 HELSMKDELLQIYSNDDEESEPESSESTPLRRNESSLSSQKCIQLEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKE 197 (306)
T ss_pred HHHHHHHHHHHhcCcHhhhcccccCCCccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHH
Confidence 888754443211 011 0111 3445888888888888887776554411100
Q ss_pred ---hhhhhhhccccCCCCccchhhHH----HHhhhhHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHHH
Q 009074 246 ---VATVVANEWKDANDKVMPVKQWL----EERRFLQGEMQQLRDRLAITERTAKSEAQLKEKYHLRLKV 308 (544)
Q Consensus 246 ---VA~vVAnEWKDendkVmPVKqWL----EErR~LQGEmqrLrdKLAiaERtAkaEaQLKeK~~lRLk~ 308 (544)
|.- ...+.-+.|..+.-...=| |+=...|-||-+|.-.++-.++-++.=+.=+|.++..|..
T Consensus 198 qqLv~d-cv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ 266 (306)
T PF04849_consen 198 QQLVLD-CVKQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQA 266 (306)
T ss_pred HHHHHH-HHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 111 2355667777776655544 4455689999999999999988888777667766666543
No 148
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=53.41 E-value=1.7e+02 Score=30.85 Aligned_cols=69 Identities=28% Similarity=0.331 Sum_probs=46.2
Q ss_pred hhhhHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhc-hhhhhh----hHHHHHHHHHHHHH
Q 009074 160 QNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEAVLAG-GAAANA----VRDYQRKVQEMNEE 228 (544)
Q Consensus 160 QN~N~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLtqTv~ELEEAvLag-gaaaNA----vrdyqrq~~elneE 228 (544)
-+.+..|..+++..+.+|.-|..-+.+-..++|++...-.++|+.+++- -..-|. +|.+|+++..+.+.
T Consensus 136 l~~~~~l~~~~~~L~~enerL~~e~~~~~~qlE~~v~~K~~~E~~L~~KF~~vLNeKK~KIR~lq~~L~~~~~~ 209 (342)
T PF06632_consen 136 LDANSRLQAENEHLQKENERLESEANKLLKQLEKFVNAKEEHEEDLYAKFVLVLNEKKAKIRELQRLLASAKEE 209 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcc
Confidence 3444455555555556666666667777889999999999999998774 555665 55555555555443
No 149
>PRK09343 prefoldin subunit beta; Provisional
Probab=53.24 E-value=1.7e+02 Score=26.20 Aligned_cols=87 Identities=17% Similarity=0.256 Sum_probs=51.7
Q ss_pred HHHHHHHHHHhhhchHHHHHHhhhHHHHHHHHHH-----HHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHhHHHHHHhh
Q 009074 111 LKLARQEIAKLQDDNKALDRLTKSKEAALLEAER-----TVQVALAKASMVDDLQNKNQELMKQIEICQEENKILDKMHR 185 (544)
Q Consensus 111 lk~~r~Ei~kLqddnkaLerltksKEaALleAeR-----~v~~AlakA~~V~dlQN~N~EL~kQiEIcqEEnkiLdk~hR 185 (544)
+..+++++..+......|++-.+--+.++.|.+. .|=...-...+-.|...-..+|.+.+|.|..+-+-|++-.-
T Consensus 16 ~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~L~~d~~VYk~VG~vlv~qd~~e~~~~l~~r~E~ie~~ik~lekq~~ 95 (121)
T PRK09343 16 LQQLQQQLERLLQQKSQIDLELREINKALEELEKLPDDTPIYKIVGNLLVKVDKTKVEKELKERKELLELRSRTLEKQEK 95 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555555555555555544444444432 33344455666688888899999999999988888776543
Q ss_pred hHHHHHHHHHHH
Q 009074 186 QKVAEVEKLTQT 197 (544)
Q Consensus 186 QKvaEVEKLtqT 197 (544)
-.-..+.++...
T Consensus 96 ~l~~~l~e~q~~ 107 (121)
T PRK09343 96 KLREKLKELQAK 107 (121)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 150
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=52.86 E-value=15 Score=25.75 Aligned_cols=20 Identities=25% Similarity=0.612 Sum_probs=17.2
Q ss_pred hHHhhhhhHHHHHHHHHHHH
Q 009074 156 VDDLQNKNQELMKQIEICQE 175 (544)
Q Consensus 156 V~dlQN~N~EL~kQiEIcqE 175 (544)
++.+.+++.+|.+|+.+|..
T Consensus 3 ~~rlr~rI~dLer~L~~C~~ 22 (23)
T PF04508_consen 3 MNRLRNRISDLERQLSECRR 22 (23)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 46789999999999999953
No 151
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=52.34 E-value=1.5e+02 Score=25.40 Aligned_cols=100 Identities=18% Similarity=0.281 Sum_probs=57.1
Q ss_pred HHHHHHHHhhhchHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhHH-hhhhhHHHHHHHHHHHHHhHHHHHHhhhHHHHH
Q 009074 113 LARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDD-LQNKNQELMKQIEICQEENKILDKMHRQKVAEV 191 (544)
Q Consensus 113 ~~r~Ei~kLqddnkaLerltksKEaALleAeR~v~~AlakA~~V~d-lQN~N~EL~kQiEIcqEEnkiLdk~hRQKvaEV 191 (544)
.+...+..-.++...++..+..++..|...+..++.-.. -++. |+-......+-+..+.+|.+. +.++..||
T Consensus 11 ~~~~~l~~kr~e~~~~~~~~~~~e~~L~~~e~~l~~~~~---~f~~flken~~k~~rA~k~a~~e~k~----~~~k~~ei 83 (126)
T PF13863_consen 11 LVQLALDTKREEIERREEQLKQREEELEKKEQELEEDVI---KFDKFLKENEAKRERAEKRAEEEKKK----KEEKEAEI 83 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhHHHHHHHHHHHHHHHHH----HHHHHHHH
Confidence 344444444555555666666677777666665554332 2222 222333445556666666543 67788889
Q ss_pred HHHHHHHHHHHHHHHhchhhhhhhHHHH
Q 009074 192 EKLTQTVRELEEAVLAGGAAANAVRDYQ 219 (544)
Q Consensus 192 EKLtqTv~ELEEAvLaggaaaNAvrdyq 219 (544)
.+|+.++..|..-+-.-....+-..-|+
T Consensus 84 ~~l~~~l~~l~~~~~k~e~~l~~~~~Y~ 111 (126)
T PF13863_consen 84 KKLKAELEELKSEISKLEEKLEEYKKYE 111 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9888888887766555544444444443
No 152
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=52.07 E-value=2.6e+02 Score=27.93 Aligned_cols=125 Identities=18% Similarity=0.350 Sum_probs=77.7
Q ss_pred HHHHhhhchHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhh----HHhhhhhHHHHHHHHHHHHHhHHHHHHhhhHHHHHH
Q 009074 117 EIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMV----DDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVE 192 (544)
Q Consensus 117 Ei~kLqddnkaLerltksKEaALleAeR~v~~AlakA~~V----~dlQN~N~EL~kQiEIcqEEnkiLdk~hRQKvaEVE 192 (544)
-|.++-|-.+-|+..++.=+..|..+.+.+-.+++...-. ++++....++..+-+..-.-.. +.+.|+=+.++.
T Consensus 18 ~~dk~EDp~~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~--E~LAr~al~~~~ 95 (225)
T COG1842 18 LLDKAEDPEKMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGN--EDLAREALEEKQ 95 (225)
T ss_pred HHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--HHHHHHHHHHHH
Confidence 3455556666677777777777777777666666554432 2333333333333222222111 667888888888
Q ss_pred HHHHHHHHHHHHHHhchhhhhh----hHHHHHHHHHHHHHhhhHHHHHhhhhhhh
Q 009074 193 KLTQTVRELEEAVLAGGAAANA----VRDYQRKVQEMNEERKTLDRELARAKVTA 243 (544)
Q Consensus 193 KLtqTv~ELEEAvLaggaaaNA----vrdyqrq~~elneEkrtLerELARaKv~A 243 (544)
.|..++..++..+-......=. +..-+.++.++...+..|.-..+-++++.
T Consensus 96 ~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~~akA~~ 150 (225)
T COG1842 96 SLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKARKAAAKAQE 150 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888887766555554 44557888888888887776665555543
No 153
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=50.85 E-value=32 Score=30.16 Aligned_cols=63 Identities=30% Similarity=0.431 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhh--hhhhhhhhHHHHhHHHHHHHHHHHHHHhhhccCCCCChhHHhhhccHHHHHHHHHH
Q 009074 40 TEELSKVEEKLKLAENLIETKN--LEIKKINDEKRASMAAQFAAEATLRRVHAAQKDDDMPPIEAILAPLEAELKLARQE 117 (544)
Q Consensus 40 ~~El~K~dEKLk~tE~lle~kN--LEiKklndEKK~alAAQfAAEAtLRRvha~QKdddmppieaiiApLeaelk~~r~E 117 (544)
..|+..++||+..+..-|+..+ |.-..+.+|.|..|. +++-.|-..+-+.|.+|+..|+|
T Consensus 4 ~~eId~lEekl~~cr~~le~ve~rL~~~eLs~e~R~~lE------------------~E~~~l~~~l~~~E~eL~~LrkE 65 (85)
T PF15188_consen 4 AKEIDGLEEKLAQCRRRLEAVESRLRRRELSPEARRSLE------------------KELNELKEKLENNEKELKLLRKE 65 (85)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHH------------------HHHHHHHHHhhccHHHHHHHHHh
Confidence 4577888888888888888544 555678898887776 45566778899999999999987
Q ss_pred HHH
Q 009074 118 IAK 120 (544)
Q Consensus 118 i~k 120 (544)
..|
T Consensus 66 NrK 68 (85)
T PF15188_consen 66 NRK 68 (85)
T ss_pred hhh
Confidence 754
No 154
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=49.58 E-value=1e+02 Score=31.49 Aligned_cols=46 Identities=28% Similarity=0.359 Sum_probs=20.5
Q ss_pred hhhhhHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 009074 159 LQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEA 204 (544)
Q Consensus 159 lQN~N~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLtqTv~ELEEA 204 (544)
.+.+.+.|..++++|+.--.--.++..-=-.|..+-++++..|++.
T Consensus 261 ~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~RW~~~~~~l~~~ 306 (344)
T PF12777_consen 261 AQKEKQELEEEIEETERKLERAEKLISGLSGEKERWSEQIEELEEQ 306 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhccHHHHHhhhcchhhhHHHHHHHHHHH
Confidence 3344455555555555432222222222233555555555555544
No 155
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=49.46 E-value=5.3e+02 Score=30.79 Aligned_cols=162 Identities=22% Similarity=0.284 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhhHH---HHhHHHHHHHHHHHHHHhhhccCCCCChhHHhhhccHHHHHHHHHHHH
Q 009074 43 LSKVEEKLKLAENLIETKNLEIKKINDEK---RASMAAQFAAEATLRRVHAAQKDDDMPPIEAILAPLEAELKLARQEIA 119 (544)
Q Consensus 43 l~K~dEKLk~tE~lle~kNLEiKklndEK---K~alAAQfAAEAtLRRvha~QKdddmppieaiiApLeaelk~~r~Ei~ 119 (544)
++||.-|.+..|++++.+|--|++|..|- |..|++--+-|-+++ .-|--+.|+++....+.+
T Consensus 476 IkKLRAk~ke~etl~~K~ge~i~~L~sE~~~lk~il~~Kee~Ek~~~---------------E~I~k~~ae~~rq~~~~~ 540 (961)
T KOG4673|consen 476 IKKLRAKIKEAETLEEKKGELITKLQSEENKLKSILRDKEETEKLLQ---------------ETIEKHQAELTRQKDYYS 540 (961)
T ss_pred HHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHhhhHHHHHHHHH---------------HHHHHHHHHHHHHHHhhh
Confidence 57788888999999999999999998774 334555555554432 235678889998888888
Q ss_pred HhhhchHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHhHH-------HHHHhhhHHHHHH
Q 009074 120 KLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKI-------LDKMHRQKVAEVE 192 (544)
Q Consensus 120 kLqddnkaLerltksKEaALleAeR~v~~AlakA~~V~dlQN~N~EL~kQiEIcqEEnki-------Ldk~hRQKvaEVE 192 (544)
.++-+..+|+.-..+-++++.+|-.-++- +-++.-|++-.+-+.|--|.+...+--.. =+.|.| -||+
T Consensus 541 ~sr~~~~~le~~~~a~qat~d~a~~Dlqk--~nrlkQdear~~~~~lvqqv~dLR~~L~~~Eq~aarrEd~~R---~Ei~ 615 (961)
T KOG4673|consen 541 NSRALAAALEAQALAEQATNDEARSDLQK--ENRLKQDEARERESMLVQQVEDLRQTLSKKEQQAARREDMFR---GEIE 615 (961)
T ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhhHHH--HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH
Confidence 88888888888888888888887753331 22222344444444554444433221111 112222 3666
Q ss_pred HHHHHHHH----HHHHHHhchhhhhhhHHHHHHHHHHHH
Q 009074 193 KLTQTVRE----LEEAVLAGGAAANAVRDYQRKVQEMNE 227 (544)
Q Consensus 193 KLtqTv~E----LEEAvLaggaaaNAvrdyqrq~~elne 227 (544)
.|.+-+.+ -||.+..-|+.+ |-.-|||..|++
T Consensus 616 ~LqrRlqaaE~R~eel~q~v~~TT---rPLlRQIE~lQ~ 651 (961)
T KOG4673|consen 616 DLQRRLQAAERRCEELIQQVPETT---RPLLRQIEALQE 651 (961)
T ss_pred HHHHHHHHHHHHHHHHHhhccccc---cHHHHHHHHHHH
Confidence 66665554 345555545443 344556655543
No 156
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.11 E-value=4.8e+02 Score=30.20 Aligned_cols=213 Identities=21% Similarity=0.288 Sum_probs=117.8
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHhHHHHHHHHHHHHHHhhhccCCC-CChhHHhhhccHHHHHHHHHH
Q 009074 39 LTEELSKVEEKLKLAENLIETKNLEIKKINDEKRASMAAQFAAEATLRRVHAAQKDDD-MPPIEAILAPLEAELKLARQE 117 (544)
Q Consensus 39 l~~El~K~dEKLk~tE~lle~kNLEiKklndEKK~alAAQfAAEAtLRRvha~QKddd-mppieaiiApLeaelk~~r~E 117 (544)
|.--..|.|-+|+..|.+||+||-|+-+++-.= -.-|..--|-- -|.+...|--||-++--|+.+
T Consensus 371 Las~glk~ds~Lk~leIalEqkkEec~kme~qL--------------kkAh~~~ddar~~pe~~d~i~~le~e~~~y~de 436 (654)
T KOG4809|consen 371 LASAGLKRDSKLKSLEIALEQKKEECSKMEAQL--------------KKAHNIEDDARMNPEFADQIKQLEKEASYYRDE 436 (654)
T ss_pred HHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHH--------------HHHHHhhHhhhcChhhHHHHHHHHHHHHHHHHH
Confidence 444456789999999999999998887765432 22233322222 266888999999999999998
Q ss_pred HHHhhhchHHH-------HHHhhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHH-HHHHHHHHHhHHHHHHhh----
Q 009074 118 IAKLQDDNKAL-------DRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELM-KQIEICQEENKILDKMHR---- 185 (544)
Q Consensus 118 i~kLqddnkaL-------erltksKEaALleAeR~v~~AlakA~~V~dlQN~N~EL~-kQiEIcqEEnkiLdk~hR---- 185 (544)
..+.|-.-+-| +.+-.-|+..+-+.+|-+..--- +.+-|| |||+...+--..|+-+-|
T Consensus 437 ~~kaqaevdrlLeilkeveneKnDkdkkiaeler~~kdqnk----------kvaNlkHk~q~Ekkk~aq~lee~rrred~ 506 (654)
T KOG4809|consen 437 CGKAQAEVDRLLEILKEVENEKNDKDKKIAELERHMKDQNK----------KVANLKHKQQLEKKKNAQLLEEVRRREDS 506 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccccchhhhcCchhhhhhh----------HHhhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 88887655443 33334455566666644432111 112222 333333333344443333
Q ss_pred ----hHHHHHHHHHHHHHHHHHHHHhchhhhhhhHHHHH----HHHHHHHHh-hhHHHHHhhhhhhhhhhhhhhhhcccc
Q 009074 186 ----QKVAEVEKLTQTVRELEEAVLAGGAAANAVRDYQR----KVQEMNEER-KTLDRELARAKVTANRVATVVANEWKD 256 (544)
Q Consensus 186 ----QKvaEVEKLtqTv~ELEEAvLaggaaaNAvrdyqr----q~~elneEk-rtLerELARaKv~AnRVA~vVAnEWKD 256 (544)
++-.-|++|--.+...-.-.-++||.--..+..-- -...|--|+ +.|+.=| -- -+--||-
T Consensus 507 ~~d~sqhlq~eel~~alektkQel~~tkarl~stqqslaEke~HL~nLr~errk~Lee~l-em----------K~~a~k~ 575 (654)
T KOG4809|consen 507 MADNSQHLQIEELMNALEKTKQELDATKARLASTQQSLAEKEAHLANLRIERRKQLEEIL-EM----------KKPAWKP 575 (654)
T ss_pred hcchHHHHHHHHHHHHHHHHhhChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh----------hhhhhhc
Confidence 22333555544444333333445554433332211 011111111 1122111 11 1567998
Q ss_pred CCCCccchhhHHHHhhhhHHHHHHHHHHHHHhHH
Q 009074 257 ANDKVMPVKQWLEERRFLQGEMQQLRDRLAITER 290 (544)
Q Consensus 257 endkVmPVKqWLEErR~LQGEmqrLrdKLAiaER 290 (544)
. +|-+.|-+-++-...=+-.++...+.+++
T Consensus 576 ~----i~~d~~~~~~~~~~~~~~k~~~ev~~~~~ 605 (654)
T KOG4809|consen 576 G----IHADMWRETHKPSNETVTKGSTEVTLAEC 605 (654)
T ss_pred C----CCHHHHHHHhhhhhhHHHhhHHHHHHHHH
Confidence 8 99999999999887777777776665554
No 157
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=48.77 E-value=3.6e+02 Score=28.63 Aligned_cols=162 Identities=24% Similarity=0.283 Sum_probs=86.1
Q ss_pred hhHHHHHHHHHHHHHHH----HHHhhhhHHhhhhhHHHHHHHHHHHHHhHHHHHHhhhHH---HHHHHHHHHHHHHHHHH
Q 009074 133 KSKEAALLEAERTVQVA----LAKASMVDDLQNKNQELMKQIEICQEENKILDKMHRQKV---AEVEKLTQTVRELEEAV 205 (544)
Q Consensus 133 ksKEaALleAeR~v~~A----lakA~~V~dlQN~N~EL~kQiEIcqEEnkiLdk~hRQKv---aEVEKLtqTv~ELEEAv 205 (544)
.||--||.-.-+.+... -.+-.|++-||.+.+.|++++..+.-+.- .-.++.. .+=..|++.+.+..|..
T Consensus 5 ~SK~eAL~IL~~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~---~~~d~~~~~~~~~~~La~lL~~sre~N 81 (319)
T PF09789_consen 5 QSKSEALLILSQELEKCQSERDQYKLMAEQLQERYQALKKKYRELIQEAA---GFGDPSIPPEKENKNLAQLLSESREQN 81 (319)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc---ccCCccCCcccchhhHHHHHHHHHHHH
Confidence 35555554444333332 23567777777777777777764441100 0000000 02223444444444433
Q ss_pred HhchhhhhhhHHHHHHHHHHHHHhhhHHHHHhhhhhhhhhhhhhhhhccccCCCCccchhhHHHHhhhhHHHHHHHHHHH
Q 009074 206 LAGGAAANAVRDYQRKVQEMNEERKTLDRELARAKVTANRVATVVANEWKDANDKVMPVKQWLEERRFLQGEMQQLRDRL 285 (544)
Q Consensus 206 LaggaaaNAvrdyqrq~~elneEkrtLerELARaKv~AnRVA~vVAnEWKDendkVmPVKqWLEErR~LQGEmqrLrdKL 285 (544)
..-. .=|..++.++.|+..+.+.|-.-+++.++..+.+.+-.. | .||-=|--.+-.++.+.
T Consensus 82 k~L~---~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~-----------~-----~ere~lV~qLEk~~~q~ 142 (319)
T PF09789_consen 82 KKLK---EEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHF-----------P-----HEREDLVEQLEKLREQI 142 (319)
T ss_pred HHHH---HHHHHHHHHHHHHhchHHHHHHHHHhhhhhhcccccccc-----------c-----hHHHHHHHHHHHHHHHH
Confidence 3211 114556778888888888888888888887764332211 1 55555666666777777
Q ss_pred HHhHHhhhHHHHHH-------HHHHHHHHHHHHhhcCC
Q 009074 286 AITERTAKSEAQLK-------EKYHLRLKVLEESLRGS 316 (544)
Q Consensus 286 AiaERtAkaEaQLK-------eK~~lRLk~LEe~lk~~ 316 (544)
...||.-++----| |-|+-+..-|=.-|.+.
T Consensus 143 ~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~~ 180 (319)
T PF09789_consen 143 EQLERDLQSLLDEKEELVTERDAYKCKAHRLNHELNYI 180 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777665533222 45666665555555443
No 158
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=48.62 E-value=7.2e+02 Score=32.16 Aligned_cols=225 Identities=19% Similarity=0.235 Sum_probs=127.6
Q ss_pred HHHHHHHHHHhhhccCCCCChhHHhhhccHHHHHHHHHHHHHhhhchHHH----HHHhhhHHHHHHHHHHHHHHHHHHhh
Q 009074 79 FAAEATLRRVHAAQKDDDMPPIEAILAPLEAELKLARQEIAKLQDDNKAL----DRLTKSKEAALLEAERTVQVALAKAS 154 (544)
Q Consensus 79 fAAEAtLRRvha~QKdddmppieaiiApLeaelk~~r~Ei~kLqddnkaL----erltksKEaALleAeR~v~~AlakA~ 154 (544)
...|-+|-++-.. -|+-.--+++-|--+..++...+.+|..|..++--| +.-++.+|..++.+-+.+-++..
T Consensus 936 ~s~eqsl~~~ks~-lde~~~~~ea~ie~~~~k~tslE~~ls~L~~~~~~l~~e~~~~~k~~e~~~~~~~~e~~sl~n--- 1011 (1822)
T KOG4674|consen 936 SSLEQSLESVKSE-LDETRLELEAKIESLHKKITSLEEELSELEKEIENLREELELSTKGKEDKLLDLSREISSLQN--- 1011 (1822)
T ss_pred HHHHHHHHHHHHH-HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHhHHHHH---
Confidence 3455555554221 122234566666666666666666666655555443 57788999999888887766532
Q ss_pred hhHHhhhhhHHHHHHHHHHHHHhHHH----HHHhhhHHHH---HHHHHHHHHHHHHHHHhc---------------hhhh
Q 009074 155 MVDDLQNKNQELMKQIEICQEENKIL----DKMHRQKVAE---VEKLTQTVRELEEAVLAG---------------GAAA 212 (544)
Q Consensus 155 ~V~dlQN~N~EL~kQiEIcqEEnkiL----dk~hRQKvaE---VEKLtqTv~ELEEAvLag---------------gaaa 212 (544)
=+.++++...+-.++|.+++..++.. -+.++..-.| -..+++++..|.+..-.. ++-.
T Consensus 1012 e~~~~~~~~s~~~~~~~~~k~dl~~~~~~~~~a~~~Ye~el~~ha~~~q~l~kl~ee~~~~~~e~~~Lk~~~~~~~~~l~ 1091 (1822)
T KOG4674|consen 1012 ELKSLLKAASQANEQIEDLQNDLKTETEQLRKAQSKYESELVQHADLTQKLIKLREEFAKCNDELLKLKKSRESRHALLS 1091 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHh
Confidence 12333444444445555555544443 3334443333 345667777777765433 2233
Q ss_pred hhhHHH--------------HHHHHHHHHHhhhHHHHHhhhhhhhhhhhhhhhhccccCCCCccchhhHHHHhhhhHHHH
Q 009074 213 NAVRDY--------------QRKVQEMNEERKTLDRELARAKVTANRVATVVANEWKDANDKVMPVKQWLEERRFLQGEM 278 (544)
Q Consensus 213 NAvrdy--------------qrq~~elneEkrtLerELARaKv~AnRVA~vVAnEWKDendkVmPVKqWLEErR~LQGEm 278 (544)
+..+++ ..+|..|....+.|+..+. ..+++ .++|-+..++.= .-+-+.-..||.-|+
T Consensus 1092 e~~~~w~E~~~~Leqe~~~~~~~~~~L~~qNslLh~qie--~~s~~------~~~~n~S~~~~g-~sdL~~iv~~LR~Ek 1162 (1822)
T KOG4674|consen 1092 EQERDWSEKEDALEQEVNELKKRIESLEKQNSLLHDQFE--ELSQQ------SAVSNLSAMLLG-LSDLQNIVSFLRKEK 1162 (1822)
T ss_pred hcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhh------hhhccccccccc-hHHHHHHHHHHHhHH
Confidence 334433 1223333334444443331 11122 122544433331 457788899999999
Q ss_pred HHHHHHHHHhHHhhhHHHHHHHHHHHHHHHHHHhhcCC
Q 009074 279 QQLRDRLAITERTAKSEAQLKEKYHLRLKVLEESLRGS 316 (544)
Q Consensus 279 qrLrdKLAiaERtAkaEaQLKeK~~lRLk~LEe~lk~~ 316 (544)
..+-+|+.++.|..+-=.|--+=+..-+..|..+|...
T Consensus 1163 ei~~tk~~~lk~e~~~L~qq~~~~~k~i~dL~~sL~~~ 1200 (1822)
T KOG4674|consen 1163 EIAETKLDTLKRENARLKQQVASLNRTIDDLQRSLTAE 1200 (1822)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988776666666677777777777764
No 159
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=48.35 E-value=31 Score=31.81 Aligned_cols=58 Identities=22% Similarity=0.236 Sum_probs=40.1
Q ss_pred chhccCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHhHHHHHHHHHHH
Q 009074 28 DFALNLPVFPKLTEELSKVEEKLKLAENLIETKNLEIKKINDEKRASMAAQFAAEATL 85 (544)
Q Consensus 28 ~e~lKdKaveEl~~El~K~dEKLk~tE~lle~kNLEiKklndEKK~alAAQfAAEAtL 85 (544)
|+.+|+++..+|.+.+..+|-.|.-+|-.....--|+++.+..--..+..||..|-.-
T Consensus 14 Te~~K~~l~~~l~~~i~~~d~el~QLefq~kr~~~e~~~~~~~~~~~i~~q~~~e~~~ 71 (131)
T PF11068_consen 14 TEKWKEELLQELQEQIQQLDQELQQLEFQGKRMIKEIKKQNAQQIQSIQQQFEQEKQE 71 (131)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHH
Confidence 8999999999998888887777776666665555555555555556666677666553
No 160
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=47.56 E-value=1.4e+02 Score=23.52 Aligned_cols=53 Identities=28% Similarity=0.329 Sum_probs=29.5
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHhHHH
Q 009074 128 LDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKIL 180 (544)
Q Consensus 128 LerltksKEaALleAeR~v~~AlakA~~V~dlQN~N~EL~kQiEIcqEEnkiL 180 (544)
..+..++.+||--.=+|..+-...--.-|+.|+..|..|+.++...+.++.-|
T Consensus 7 ~~rr~rNR~AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L 59 (64)
T PF00170_consen 7 ERRRERNREAARRSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSL 59 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566677776665555555444444445555555555555555555554433
No 161
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=47.06 E-value=5.4e+02 Score=30.24 Aligned_cols=204 Identities=24% Similarity=0.281 Sum_probs=127.1
Q ss_pred hHHhhhccHHHHHHHHHHHHHhhhchHHHHHHhhhHHHHHHHHHHHHHHHHH--Hhhh--hHHhhhhhHHH-------HH
Q 009074 100 IEAILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALA--KASM--VDDLQNKNQEL-------MK 168 (544)
Q Consensus 100 ieaiiApLeaelk~~r~Ei~kLqddnkaLerltksKEaALleAeR~v~~Ala--kA~~--V~dlQN~N~EL-------~k 168 (544)
++.+=.-||+.|--+.+++..+.-+|.+|-+-+-.|+..+.+....-..|.+ .+++ ++-++..|.-| .|
T Consensus 83 ~e~~~~~le~~l~e~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~k 162 (769)
T PF05911_consen 83 WEKIKSELEAKLAELSKRLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSK 162 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667888888888888888888888888777887777776654444443 2222 25555555554 46
Q ss_pred HHHHHHHHhHH----HHHHhhhH---HHHHHHHHHHHHHHHHHHHhc--hhhhhhhHHHHHHHHHHHHHhhhHHHHHhhh
Q 009074 169 QIEICQEENKI----LDKMHRQK---VAEVEKLTQTVRELEEAVLAG--GAAANAVRDYQRKVQEMNEERKTLDRELARA 239 (544)
Q Consensus 169 QiEIcqEEnki----Ldk~hRQK---vaEVEKLtqTv~ELEEAvLag--gaaaNAvrdyqrq~~elneEkrtLerELARa 239 (544)
++||--+|... -|-.|+|- |--|.||-.+-+.|.--|-.- |.||= ..|..|...|-|+-.-.
T Consensus 163 eleir~~E~~~~~~~ae~a~kqhle~vkkiakLEaEC~rLr~l~rk~lpgpaa~---------a~mk~ev~~~~~~~~~~ 233 (769)
T PF05911_consen 163 ELEIRNEEREYSRRAAEAASKQHLESVKKIAKLEAECQRLRALVRKKLPGPAAL---------AQMKNEVESLGRDSGEN 233 (769)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHH---------HHhHHHHHHhccccccc
Confidence 66666666543 34455554 555667777777788777663 66653 46778888886665544
Q ss_pred hhhhhhhh--hhhhhccccCCCCccchhhHHHHhh-hhHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHHHHHHhh
Q 009074 240 KVTANRVA--TVVANEWKDANDKVMPVKQWLEERR-FLQGEMQQLRDRLAITERTAKSEAQLKEKYHLRLKVLEESL 313 (544)
Q Consensus 240 Kv~AnRVA--~vVAnEWKDendkVmPVKqWLEErR-~LQGEmqrLrdKLAiaERtAkaEaQLKeK~~lRLk~LEe~l 313 (544)
+...|.+- +++.+-- +......+.-..|-+|= -|--|+..||+=||.-.-...+.--+--+---||.+||--|
T Consensus 234 r~r~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~eeEnk~Lke~l~~k~~ELq~sr~~~a~ta~kL~~~e~ql 309 (769)
T PF05911_consen 234 RRRRSPSRPSSPHDFSP-QNPQKRSKESEFLTERLQAMEEENKMLKEALAKKNSELQFSRNMYAKTASKLSQLEAQL 309 (769)
T ss_pred cCCCCCCcccccccccc-cccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43333332 2222111 11123334445666653 37789999999887655444444444556667888888888
No 162
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=46.92 E-value=6.4e+02 Score=31.09 Aligned_cols=99 Identities=22% Similarity=0.212 Sum_probs=72.8
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHhHHHHHHHHH---HHHHHhhhccCCCCChhHHhhhccHHHHHHH
Q 009074 38 KLTEELSKVEEKLKLAENLIETKNLEIKKINDEKRASMAAQFAAEA---TLRRVHAAQKDDDMPPIEAILAPLEAELKLA 114 (544)
Q Consensus 38 El~~El~K~dEKLk~tE~lle~kNLEiKklndEKK~alAAQfAAEA---tLRRvha~QKdddmppieaiiApLeaelk~~ 114 (544)
|+..|..+++.++...|.....-.-..|-|..|||.+-..--=|+- ..-+.|+.|+.- +...+-++|+++..+
T Consensus 157 ElK~EYeelK~E~~kAE~~t~~~~~kkk~I~aEkk~aK~~k~eaeky~~lkde~~~~q~e~----~L~qLfhvE~~i~k~ 232 (1141)
T KOG0018|consen 157 ELKPEYEELKYEMAKAEETTTGNYKKKKSIAAEKKEAKEGKEEAEKYQRLKDEKGKAQKEQ----FLWELFHVEACIEKA 232 (1141)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH----HHHHHhhhhhhHhhh
Confidence 4677889999999999999888888889999999866544443443 233566666543 344667888888888
Q ss_pred HHHHHHhhhchHHHHHHhhhHHHHHH
Q 009074 115 RQEIAKLQDDNKALDRLTKSKEAALL 140 (544)
Q Consensus 115 r~Ei~kLqddnkaLerltksKEaALl 140 (544)
-.++..+..+.+.+..-.-.+|.++.
T Consensus 233 ~~els~~~~ei~~~~~~~d~~e~ei~ 258 (1141)
T KOG0018|consen 233 NDELSRLNAEIPKLKERMDKKEREIR 258 (1141)
T ss_pred hHHHHHHhhhhHHHHhhhhHHHHHHH
Confidence 88888888888888777766666654
No 163
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=46.63 E-value=2.6e+02 Score=26.51 Aligned_cols=45 Identities=22% Similarity=0.248 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh
Q 009074 163 NQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEAVLA 207 (544)
Q Consensus 163 N~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLtqTv~ELEEAvLa 207 (544)
...++.+++.++..+..|..--.+.-.+|+.....+.++.+.+..
T Consensus 58 ~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~ 102 (302)
T PF10186_consen 58 IQQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQ 102 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555544444444444555555555555544443
No 164
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=46.59 E-value=5.1e+02 Score=29.79 Aligned_cols=90 Identities=17% Similarity=0.197 Sum_probs=58.0
Q ss_pred hhhccHHHHHHHHHHHHHhhhchHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHhHHHHH
Q 009074 103 ILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKILDK 182 (544)
Q Consensus 103 iiApLeaelk~~r~Ei~kLqddnkaLerltksKEaALleAeR~v~~AlakA~~V~dlQN~N~EL~kQiEIcqEEnkiLdk 182 (544)
+.-||...+....-++...+.++-.|+.+...+.+-+-|-.+++..-...+.++++.-+ +.|+ +.++|
T Consensus 419 V~~~l~el~~ei~~~~~~~~~~~~tLq~~~~~~~~~i~E~~~~l~~~~~el~~~~~~~~----~~k~--e~eee------ 486 (581)
T KOG0995|consen 419 VKPLLKELLDEISEELHEAENELETLQEHFSNKASTIEEKIQILGEIELELKKAESKYE----LKKE--EAEEE------ 486 (581)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH--HHHHH------
Confidence 56666666666777788888888888888888888888888888877777777766432 2222 11121
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHH
Q 009074 183 MHRQKVAEVEKLTQTVRELEEAV 205 (544)
Q Consensus 183 ~hRQKvaEVEKLtqTv~ELEEAv 205 (544)
.+---.|+|+|-..+..|...+
T Consensus 487 -~~k~~~E~e~le~~l~~l~l~~ 508 (581)
T KOG0995|consen 487 -WKKCRKEIEKLEEELLNLKLVL 508 (581)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHH
Confidence 2333456666666665555443
No 165
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=46.06 E-value=6.5e+02 Score=30.88 Aligned_cols=30 Identities=20% Similarity=0.129 Sum_probs=22.8
Q ss_pred CCccccccccccccccCCCCCCCcc---hhhhh
Q 009074 342 GADNISKLTSNGFISKRTPSSRSLS---SSTVL 371 (544)
Q Consensus 342 g~~~~~~~~sng~~~kr~~~sq~r~---s~~~l 371 (544)
|-.|+-++-.++++.+=++-.|+.| -|++|
T Consensus 941 gI~ImVkFR~s~~L~~L~sh~QSGGERSVSTiL 973 (1072)
T KOG0979|consen 941 GIMIMVKFRDSEGLKVLDSHRQSGGERSVSTIL 973 (1072)
T ss_pred ceEEEEEEccCcccccccccccCCcchHHHHHH
Confidence 6778888888888888878777766 45554
No 166
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=45.93 E-value=1.1e+02 Score=24.48 Aligned_cols=50 Identities=28% Similarity=0.467 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHH-------hchhhhhh----hHHHHHHHHHHHHHhhhHHHHHhh
Q 009074 189 AEVEKLTQTVRELEEAVL-------AGGAAANA----VRDYQRKVQEMNEERKTLDRELAR 238 (544)
Q Consensus 189 aEVEKLtqTv~ELEEAvL-------aggaaaNA----vrdyqrq~~elneEkrtLerELAR 238 (544)
+|+++|+..+..++.-|. ..|-..|| |...+.+..++..+...|..-|+.
T Consensus 4 ~E~~rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP~eVve~er~kl~~~~~~~~~l~~~l~~ 64 (66)
T PF10458_consen 4 AEIERLEKELEKLEKEIERLEKKLSNENFVEKAPEEVVEKEREKLEELEEELEKLEEALEQ 64 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCSTTHHHHS-CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455555555555554443 24666666 888899999999999999887764
No 167
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=45.41 E-value=3.3e+02 Score=27.25 Aligned_cols=20 Identities=15% Similarity=0.097 Sum_probs=9.5
Q ss_pred HHHHHhhhHHHHHhhhhhhh
Q 009074 224 EMNEERKTLDRELARAKVTA 243 (544)
Q Consensus 224 elneEkrtLerELARaKv~A 243 (544)
.+..+.......|.+..++|
T Consensus 194 ~~~a~l~~a~~~l~~~~I~A 213 (346)
T PRK10476 194 AREAALAIAELHLEDTTVRA 213 (346)
T ss_pred HHHHHHHHHHHHhhcCEEEC
Confidence 33344444445555555544
No 168
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=45.24 E-value=6.7e+02 Score=30.78 Aligned_cols=65 Identities=31% Similarity=0.333 Sum_probs=52.5
Q ss_pred hhhhhhhhhhhHHHHhHHHHHHHHHHHHHHhhhccCCCCChhHHhhhccHHHHHHHHHHHHHhhhchHHH
Q 009074 59 TKNLEIKKINDEKRASMAAQFAAEATLRRVHAAQKDDDMPPIEAILAPLEAELKLARQEIAKLQDDNKAL 128 (544)
Q Consensus 59 ~kNLEiKklndEKK~alAAQfAAEAtLRRvha~QKdddmppieaiiApLeaelk~~r~Ei~kLqddnkaL 128 (544)
.+=++.++-.+|..+-+.|---|-+.+|-+-. +.-||+.-+-|||.+.+..+.+|...+.+...-
T Consensus 238 ~~~v~y~~~~~ey~~~k~~~~r~k~~~r~l~k-----~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~ 302 (1072)
T KOG0979|consen 238 KKWVEYKKHDREYNAYKQAKDRAKKELRKLEK-----EIKPIEDKKEELESEKKETRSKISQKQRELNEA 302 (1072)
T ss_pred ccccchHhhhHHHHHHHHHHHHHHHHHHHHHH-----hhhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHH
Confidence 34567788888888888888888888887754 556999999999999999999988888776543
No 169
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=44.91 E-value=4.1e+02 Score=28.25 Aligned_cols=53 Identities=19% Similarity=0.386 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHhhhHHHHHhhhhhhhhhhhhhhhhccccCCCCccchhhHHHHhhhhHHHHHHHHHHHHH
Q 009074 218 YQRKVQEMNEERKTLDRELARAKVTANRVATVVANEWKDANDKVMPVKQWLEERRFLQGEMQQLRDRLAI 287 (544)
Q Consensus 218 yqrq~~elneEkrtLerELARaKv~AnRVA~vVAnEWKDendkVmPVKqWLEErR~LQGEmqrLrdKLAi 287 (544)
....|..|..|...|-..|+.+. ..-+++.-+++.+-+-+..|..+|+-+|..
T Consensus 227 ~~shI~~Lr~EV~RLR~qL~~sq-----------------~e~~~k~~~~~~eek~ireEN~rLqr~L~~ 279 (310)
T PF09755_consen 227 LSSHIRSLRQEVSRLRQQLAASQ-----------------QEHSEKMAQYLQEEKEIREENRRLQRKLQR 279 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777788887777775322 223478889999999999999999999864
No 170
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=44.69 E-value=5.8e+02 Score=29.89 Aligned_cols=85 Identities=21% Similarity=0.268 Sum_probs=55.9
Q ss_pred hhhHHhhhhhHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhchhhhhhhHHHHHHH----HHHHHHh
Q 009074 154 SMVDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEAVLAGGAAANAVRDYQRKV----QEMNEER 229 (544)
Q Consensus 154 ~~V~dlQN~N~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLtqTv~ELEEAvLaggaaaNAvrdyqrq~----~elneEk 229 (544)
+.++|+|-+|+-|.-|.+.--..|--|=.--=---.++--|...-..|++-|+..++.+++..+|-.++ .-+....
T Consensus 461 sA~ed~Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~ 540 (698)
T KOG0978|consen 461 SAFEDMQEQNQKLLQELREKDDKNFKLMSERIKANQKHKLLREEKSKLEEQILTLKASVDKLELKIGKLEEQERGLTSNE 540 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhh
Confidence 346899999999999999888887644110000112344455556667888888899998876664444 4455666
Q ss_pred hhHHHHHhh
Q 009074 230 KTLDRELAR 238 (544)
Q Consensus 230 rtLerELAR 238 (544)
..+..||..
T Consensus 541 ~~l~~el~~ 549 (698)
T KOG0978|consen 541 SKLIKELTT 549 (698)
T ss_pred hhhHHHHHH
Confidence 677777744
No 171
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=44.49 E-value=7.4e+02 Score=31.06 Aligned_cols=70 Identities=23% Similarity=0.428 Sum_probs=45.7
Q ss_pred hHHHHHHHHHHHHHhhhHHHHHhhhhhhhhhhhhhhhhccccCCCCccchhhHHHHhhhhHHHHHHHHHHHHHhHHhhh
Q 009074 215 VRDYQRKVQEMNEERKTLDRELARAKVTANRVATVVANEWKDANDKVMPVKQWLEERRFLQGEMQQLRDRLAITERTAK 293 (544)
Q Consensus 215 vrdyqrq~~elneEkrtLerELARaKv~AnRVA~vVAnEWKDendkVmPVKqWLEErR~LQGEmqrLrdKLAiaERtAk 293 (544)
.+--.+|++++..|...|+-++.-+.+..++=..+--.+.++- -.-+.--+-|+|+++.+-+....+...
T Consensus 1010 ~~~l~~q~~e~~re~~~ld~Qi~~~~~~~~~ee~~~L~~~~~~---------l~se~~~~lg~~ke~e~~i~~~k~eL~ 1079 (1294)
T KOG0962|consen 1010 LRNLERKLKELERELSELDKQILEADIKSVKEERVKLEEEREK---------LSSEKNLLLGEMKQYESQIKKLKQELR 1079 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH---------hhhHhhHHHHHHHHHHHHHHHHHHHhh
Confidence 4455788899999999999888888866665444433444332 111334467888888887776665544
No 172
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=44.47 E-value=1.2e+02 Score=31.08 Aligned_cols=68 Identities=24% Similarity=0.216 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHhhhchHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHhHHHHHHhhhHH
Q 009074 109 AELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKILDKMHRQKV 188 (544)
Q Consensus 109 aelk~~r~Ei~kLqddnkaLerltksKEaALleAeR~v~~AlakA~~V~dlQN~N~EL~kQiEIcqEEnkiLdk~hRQKv 188 (544)
.+-..++.++..|.++|++|++.+-.-++.+.-++ .+++..++.-- .-..||+.+|-+.|||=-
T Consensus 185 ~ek~~~~~~~k~le~~k~~Le~~ia~~k~K~e~~e--~r~~E~r~ieE--------------kk~~eei~fLk~tN~qLK 248 (259)
T KOG4001|consen 185 NEKTRATTEWKVLEDKKKELELKIAQLKKKLETDE--IRSEEEREIEE--------------KKMKEEIEFLKETNRQLK 248 (259)
T ss_pred hhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHH--------------HHHHHHHHHHHHHHHHHH
Confidence 34556778999999999999999887777776666 45554443211 124577888888888866
Q ss_pred HHHH
Q 009074 189 AEVE 192 (544)
Q Consensus 189 aEVE 192 (544)
+-+|
T Consensus 249 aQLe 252 (259)
T KOG4001|consen 249 AQLE 252 (259)
T ss_pred HHHh
Confidence 5544
No 173
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=44.41 E-value=5e+02 Score=29.06 Aligned_cols=36 Identities=22% Similarity=0.423 Sum_probs=31.2
Q ss_pred hhhhhhhHHHHHHHHHHHHHhhhHHHHHhhhhhhhh
Q 009074 209 GAAANAVRDYQRKVQEMNEERKTLDRELARAKVTAN 244 (544)
Q Consensus 209 gaaaNAvrdyqrq~~elneEkrtLerELARaKv~An 244 (544)
.+.+|-|+.-.++.++|.-+..-||+|.|+.-.+.-
T Consensus 248 aar~e~I~~re~~lq~lEt~q~~leqeva~le~yyQ 283 (499)
T COG4372 248 AARAEQIRERERQLQRLETAQARLEQEVAQLEAYYQ 283 (499)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566778999999999999999999999999877654
No 174
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=44.16 E-value=1.9e+02 Score=24.17 Aligned_cols=70 Identities=29% Similarity=0.439 Sum_probs=48.2
Q ss_pred hhhhHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHHHhhhHHHHHhhh
Q 009074 160 QNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEAVLAGGAAANAVRDYQRKVQEMNEERKTLDRELARA 239 (544)
Q Consensus 160 QN~N~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLtqTv~ELEEAvLaggaaaNAvrdyqrq~~elneEkrtLerELARa 239 (544)
++..-|=--||.-..+|-.-|.+-.-+--.-|-||.+.+.++|.. +..|..++..+..+...|..-|.++
T Consensus 4 ~~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~----------~~~l~~~~~~~e~~~~~l~~~l~~~ 73 (74)
T PF12329_consen 4 EKKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQ----------IKELKKKLEELEKELESLEERLKRA 73 (74)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 334444445677777777777777777777788888888888854 4566677777777777777766543
No 175
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=43.36 E-value=2.8e+02 Score=26.04 Aligned_cols=31 Identities=39% Similarity=0.433 Sum_probs=18.6
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHhhhHHHHHH
Q 009074 162 KNQELMKQIEICQEENKILDKMHRQKVAEVE 192 (544)
Q Consensus 162 ~N~EL~kQiEIcqEEnkiLdk~hRQKvaEVE 192 (544)
-|.+|.+||+.+|.+|+....-+-.++.++.
T Consensus 52 d~eeLk~~i~~lq~~~~~~~~~~e~~l~~~~ 82 (155)
T PF06810_consen 52 DNEELKKQIEELQAKNKTAKEEYEAKLAQMK 82 (155)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666555555555543
No 176
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.42 E-value=92 Score=32.13 Aligned_cols=30 Identities=23% Similarity=0.282 Sum_probs=18.6
Q ss_pred hHHHHHHHHHHHHHhHHhhhHHHHHHHHHH
Q 009074 274 LQGEMQQLRDRLAITERTAKSEAQLKEKYH 303 (544)
Q Consensus 274 LQGEmqrLrdKLAiaERtAkaEaQLKeK~~ 303 (544)
++||++.|.+..+-++-+|..-+.-...+.
T Consensus 209 ~~~e~a~l~~qka~a~a~a~~~a~~~~~~~ 238 (265)
T COG3883 209 ALGEKAALEEQKALAEAAAAEAAKQEAAAK 238 (265)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 678888888766666655554444444443
No 177
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=41.90 E-value=2.1e+02 Score=27.04 Aligned_cols=76 Identities=17% Similarity=0.246 Sum_probs=33.9
Q ss_pred hhhHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHHHhhhH-HHHHhhh
Q 009074 161 NKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEAVLAGGAAANAVRDYQRKVQEMNEERKTL-DRELARA 239 (544)
Q Consensus 161 N~N~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLtqTv~ELEEAvLaggaaaNAvrdyqrq~~elneEkrtL-erELARa 239 (544)
....+....|..++.++.-|..-.++...+|......+.-|-.-+.+--...|.+.+ ++..|..|.+.| +|=+++.
T Consensus 109 ~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~---k~~~l~~En~~Lv~Rwm~~k 185 (194)
T PF08614_consen 109 KELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEE---KLRKLEEENRELVERWMQRK 185 (194)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 333444445555555555555555555555555555555554444444444454433 334444444333 4444443
No 178
>PF03194 LUC7: LUC7 N_terminus; InterPro: IPR004882 This family consists of several LUC7 protein homologues that are restricted to eukaryotes. LUC7 has been shown to be a U1 snRNA associated protein [] with a role in splice site recognition []. The entry contains human and mouse LUC7 like (LUC7L) proteins [] and human cisplatin resistance-associated overexpressed protein (CROP) [].
Probab=41.56 E-value=1.4e+02 Score=29.95 Aligned_cols=51 Identities=37% Similarity=0.479 Sum_probs=34.8
Q ss_pred HhhhhHHhhhhhHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 009074 152 KASMVDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEA 204 (544)
Q Consensus 152 kA~~V~dlQN~N~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLtqTv~ELEEA 204 (544)
++--|.+|.-++.+|++++|..-++-++=+.+ .-+.+|++|.....+||.+
T Consensus 121 ~~~~i~~l~~~I~~ll~~aE~LGeeG~VdeA~--~~~~~~e~Lk~ek~~le~~ 171 (254)
T PF03194_consen 121 KAEKIDELDEKIGELLKEAEELGEEGDVDEAQ--KLMEEVEKLKEEKEELEKE 171 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH--HHHHHHHHHHHHHHHHHhh
Confidence 35566777777777777777777777766655 3366777777777776663
No 179
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=41.55 E-value=4.2e+02 Score=27.42 Aligned_cols=103 Identities=21% Similarity=0.280 Sum_probs=74.3
Q ss_pred cCCCCChhHHhhhccHHHHHHHHHHHHHhhhchHHHHHHhhhHHHHHHH--------------HHHHHHHHHHHhhhhHH
Q 009074 93 KDDDMPPIEAILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLE--------------AERTVQVALAKASMVDD 158 (544)
Q Consensus 93 KdddmppieaiiApLeaelk~~r~Ei~kLqddnkaLerltksKEaALle--------------AeR~v~~AlakA~~V~d 158 (544)
.|++...+...+.+--.|+|.+|+=-..+.+.--.|..|+. ||..+-+ .|+.|+ ..+..
T Consensus 101 ~e~~~~~~~~~l~~k~~dlk~~R~Laseit~~GA~LydlL~-kE~~lr~~R~~a~~r~~e~~~iE~~l~------~ai~~ 173 (267)
T PF10234_consen 101 DEEDDSLFKFDLSSKIQDLKAARQLASEITQRGASLYDLLG-KEVELREERQRALARPLELNEIEKALK------EAIKA 173 (267)
T ss_pred cccccchhhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHh-chHhHHHHHHHHHcCCcCHHHHHHHHH------HHHHH
Confidence 34444667777888899999999988888888888877763 3433332 222232 23567
Q ss_pred hhhhhHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHH
Q 009074 159 LQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELE 202 (544)
Q Consensus 159 lQN~N~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLtqTv~ELE 202 (544)
++-+.+.+.++|+-+..+.+-|+-=...|-.|+|...+-+.-|.
T Consensus 174 ~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq 217 (267)
T PF10234_consen 174 VQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQ 217 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888899999999888888888777777888888887766554
No 180
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=41.52 E-value=5.6e+02 Score=28.82 Aligned_cols=106 Identities=30% Similarity=0.405 Sum_probs=62.7
Q ss_pred HHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHHHhhhHHHHHhhhhhhhhhhhhhhhh
Q 009074 173 CQEENKILDKMHRQKVAEVEKLTQTVRELEEAVLAGGAAANAVRDYQRKVQEMNEERKTLDRELARAKVTANRVATVVAN 252 (544)
Q Consensus 173 cqEEnkiLdk~hRQKvaEVEKLtqTv~ELEEAvLaggaaaNAvrdyqrq~~elneEkrtLerELARaKv~AnRVA~vVAn 252 (544)
.|-|-.+|..---||-+|+.-|.|.+.+ ---|+|.+|+.-+|||--...|+--|| .-..|.-+.+++
T Consensus 426 vqRELeVLSEQYSQKCLEnahLaqalEa----------erqaLRqCQrEnQELnaHNQELnnRLa---aEItrLRtlltg 492 (593)
T KOG4807|consen 426 VQRELEVLSEQYSQKCLENAHLAQALEA----------ERQALRQCQRENQELNAHNQELNNRLA---AEITRLRTLLTG 492 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHhhHHHHHHHHHHhhHHH---HHHHHHHHHhcc
Confidence 3344444444456777777777665432 335689999999999877666655442 122233333332
Q ss_pred -----ccccCCCC-------ccchhhHHHHhhhhHHHHHHHHHHHHHhHHhhh
Q 009074 253 -----EWKDANDK-------VMPVKQWLEERRFLQGEMQQLRDRLAITERTAK 293 (544)
Q Consensus 253 -----EWKDendk-------VmPVKqWLEErR~LQGEmqrLrdKLAiaERtAk 293 (544)
++--.|+| ++-|| --|--||..||+-|||.|..+-|--|
T Consensus 493 dGgGtGsplaqgkdayELEVLLRVK--EsEiQYLKqEissLkDELQtalrDKk 543 (593)
T KOG4807|consen 493 DGGGTGSPLAQGKDAYELEVLLRVK--ESEIQYLKQEISSLKDELQTALRDKK 543 (593)
T ss_pred CCCCCCCccccCcchhhHHHHHHhh--HHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 22222222 12333 23667899999999999998877543
No 181
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=41.48 E-value=4.2e+02 Score=27.39 Aligned_cols=53 Identities=11% Similarity=0.264 Sum_probs=31.6
Q ss_pred hhhhHHHHHHHHHHHHHhhhHHHHHh-hhhhhhhhhhhh-----hhhccccCCCCccch
Q 009074 212 ANAVRDYQRKVQEMNEERKTLDRELA-RAKVTANRVATV-----VANEWKDANDKVMPV 264 (544)
Q Consensus 212 aNAvrdyqrq~~elneEkrtLerELA-RaKv~AnRVA~v-----VAnEWKDendkVmPV 264 (544)
.+-+...+.++.+...+...++.+|. +..+.|=-=.+| ..|+|=..+..||-+
T Consensus 226 ~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~i~AP~dG~V~~~~~~~G~~v~~g~~l~~i 284 (421)
T TIGR03794 226 EKELETVEARIKEARYEIEELENKLNLNTRIVSQHSGRVIELNYTPGQLVAAGAPLASL 284 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEcCCCeEEEEeeCCCCCEecCCCcEEEE
Confidence 44566667777777777777777776 455544322222 345666666666544
No 182
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=41.18 E-value=2.1e+02 Score=27.10 Aligned_cols=59 Identities=31% Similarity=0.552 Sum_probs=36.3
Q ss_pred hhHHhhhhhHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHHHhhh
Q 009074 155 MVDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEAVLAGGAAANAVRDYQRKVQEMNEERKT 231 (544)
Q Consensus 155 ~V~dlQN~N~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLtqTv~ELEEAvLaggaaaNAvrdyqrq~~elneEkrt 231 (544)
++++|-..+.+|.+-|+..++ |.+--..|..|.+++..|++- ++++.+++.+...+..+
T Consensus 3 ~~~~L~~~d~~L~~~L~~l~~--------hq~~~~~I~~L~~e~~~ld~~----------i~~~~~~L~~~~~~L~~ 61 (188)
T PF10018_consen 3 LAEDLIEADDELSSALEELQE--------HQENQARIQQLRAEIEELDEQ----------IRDILKQLKEARKELRT 61 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHH
Confidence 345555666666666666544 677777788888888888763 44555555444444433
No 183
>cd09234 V_HD-PTP_like Protein-interacting V-domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the V-shaped (V) domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23) and related domains. It belongs to the V_Alix_like superfamily which includes the V domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X/ also known as apoptosis-linked gene-2 interacting protein 1, AIP1), and related domains. HD_PTP interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in cell migration and endosomal trafficking. The related Alix V-domain (belonging to a different family in this superfamily) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. In addi
Probab=41.04 E-value=4.1e+02 Score=27.17 Aligned_cols=185 Identities=19% Similarity=0.307 Sum_probs=111.7
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHhHHHHHHHHHHHHHHhhhccC-CCCChhHHhhhccHHHHHHHHHH
Q 009074 39 LTEELSKVEEKLKLAENLIETKNLEIKKINDEKRASMAAQFAAEATLRRVHAAQKD-DDMPPIEAILAPLEAELKLARQE 117 (544)
Q Consensus 39 l~~El~K~dEKLk~tE~lle~kNLEiKklndEKK~alAAQfAAEAtLRRvha~QKd-ddmppieaiiApLeaelk~~r~E 117 (544)
++.+..+++++=..+...|.+.||.= +. ++. ... ..+|| +++.-.+ +|......
T Consensus 19 vr~~~~~~e~~~~~l~~~L~slnLP~--~~----------~~~----------~~~~~~lP~--~l~~~~~-~i~~~~~g 73 (337)
T cd09234 19 LREVVSEIEDKDEELDQFLSSLQLDP--LN----------VMD----------MDGQFELPQ--DLVERCA-ALSVRPDT 73 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCh--hh----------hhc----------cCCCCCCCH--HHHHHHH-HHhcCCcc
Confidence 34456677777777888899988863 11 111 122 23555 4444443 24443355
Q ss_pred HHHhhhchHHHHHHhhhHHHHHHHHHHHHHHHHH-----Hh---------hhhHHhhhhhHHHHHHHHHHHHHhHHHHHH
Q 009074 118 IAKLQDDNKALDRLTKSKEAALLEAERTVQVALA-----KA---------SMVDDLQNKNQELMKQIEICQEENKILDKM 183 (544)
Q Consensus 118 i~kLqddnkaLerltksKEaALleAeR~v~~Ala-----kA---------~~V~dlQN~N~EL~kQiEIcqEEnkiLdk~ 183 (544)
|..++....-|..+...-+.-|.++.+.|..-.. ++ ....+|..+...+..=++....-+..|.+.
T Consensus 74 i~~l~~~~~~L~~l~~~~~~~L~e~~~~L~~E~~ed~~~R~k~G~~~~S~~~~~~l~~~~~k~~~~L~~A~~sD~~l~~~ 153 (337)
T cd09234 74 IKNLVEAMGELSDVYQDVEAMLNEIESLLEEEELQEKEFQEAVGKRGSSIAHVTELKRELKKYKEAHEKASQSNTELHKA 153 (337)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 6666666666777777777777776666654322 11 013334444444444444444445555444
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhc--------hhhhhhhHHHHHHHHHHHHHhhhHHHHHhhhhhhhhhhhhh
Q 009074 184 HRQKVAEVEKLTQTVRELEEAVLAG--------GAAANAVRDYQRKVQEMNEERKTLDRELARAKVTANRVATV 249 (544)
Q Consensus 184 hRQKvaEVEKLtqTv~ELEEAvLag--------gaaaNAvrdyqrq~~elneEkrtLerELARaKv~AnRVA~v 249 (544)
.++-..-+.=|+....+|+..|=.+ ...+..+|..-+++.+|..++..+..+| |.++....|-.+
T Consensus 154 ~~~~~~~l~lL~~~~~~l~~~iPs~~~~~~~~~~~~v~~Lr~ll~kl~~lk~eR~~l~~~L-k~k~~~DDI~~~ 226 (337)
T cd09234 154 MNLHIANLKLLAGPLDELQKKLPSPSLLDRPEDEAIEKELKRILNKVNEMRKQRRSLEQQL-RDAIHEDDITSK 226 (337)
T ss_pred HHHHHHHHHHHcCcHHHHHhhCCCccccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhcCCchHH
Confidence 4444444677777777777776432 2346669999999999999999999999 667766666555
No 184
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=40.71 E-value=9.4e+02 Score=31.23 Aligned_cols=172 Identities=23% Similarity=0.252 Sum_probs=112.6
Q ss_pred HHhhhhhhhhhhhhhHHHHhHHHHHHHHHHHHHHhhhccCCCCChhHHhhhccHHHHHHHHHHHHHhhhchHHHHHHhhh
Q 009074 55 NLIETKNLEIKKINDEKRASMAAQFAAEATLRRVHAAQKDDDMPPIEAILAPLEAELKLARQEIAKLQDDNKALDRLTKS 134 (544)
Q Consensus 55 ~lle~kNLEiKklndEKK~alAAQfAAEAtLRRvha~QKdddmppieaiiApLeaelk~~r~Ei~kLqddnkaLerltks 134 (544)
..|+-++-+++.++++=+.+-.+-.=.++++-..-+.+ ..++..+...-||-..|+-+|.-|++=+..
T Consensus 136 ~ele~l~~~n~~l~~ql~ss~~~~~e~e~r~~e~~s~~------------vs~q~k~~rl~QEksll~s~~~wL~~eL~~ 203 (1822)
T KOG4674|consen 136 AELEALESENKDLNDQLKSSTKTLSELEARLQETQSED------------VSSQLKEERLEQEKSLLESENKWLSRELSK 203 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 34444555666666666655555555666655544332 237888888889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHhHHHHHHhh-------hHHHHHHHHHHHHHHHHHHHHh
Q 009074 135 KEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKILDKMHR-------QKVAEVEKLTQTVRELEEAVLA 207 (544)
Q Consensus 135 KEaALleAeR~v~~AlakA~~V~dlQN~N~EL~kQiEIcqEEnkiLdk~hR-------QKvaEVEKLtqTv~ELEEAvLa 207 (544)
+=..|+..+|. +-.-|.+|+++..++..+...||+-|+.|..-++ -++.++-++.+|....++-..+
T Consensus 204 ~~ekll~~~re------~s~~~~~L~~~L~~~~~~~~~~q~~~~~l~q~~~eLs~~ie~~~~~ls~~k~t~~s~~~kf~~ 277 (1822)
T KOG4674|consen 204 VNEKLLSLRRE------HSIEVEQLEEKLSDLKESLAELQEKNKSLKQQNEELSKKIESLNLELSKLKDTAESSEEKFEK 277 (1822)
T ss_pred HHHHHHHHHhh------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 99999988875 2233456666666666666666666666544433 3577888888887777666666
Q ss_pred chhhhhh-hHHHHHHHHHHHHHhhhHHHHHhhhhhhhh
Q 009074 208 GGAAANA-VRDYQRKVQEMNEERKTLDRELARAKVTAN 244 (544)
Q Consensus 208 ggaaaNA-vrdyqrq~~elneEkrtLerELARaKv~An 244 (544)
--.+.+. +--|..++.++..+..-|.|.+--.++..+
T Consensus 278 El~~q~kL~eL~ks~~ee~~~~~~el~~~i~~~~klle 315 (1822)
T KOG4674|consen 278 ELSTQKKLNELWKSKLEELSHEVAELQRAIEELEKLLE 315 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444 455666776666666666665544444433
No 185
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=40.39 E-value=8e+02 Score=30.33 Aligned_cols=109 Identities=17% Similarity=0.256 Sum_probs=69.0
Q ss_pred HHHHHHHHHHhhhchHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHhHHHHHHhhhHHHH
Q 009074 111 LKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKILDKMHRQKVAE 190 (544)
Q Consensus 111 lk~~r~Ei~kLqddnkaLerltksKEaALleAeR~v~~AlakA~~V~dlQN~N~EL~kQiEIcqEEnkiLdk~hRQKvaE 190 (544)
|-.-+-....||.+.--+++-++.+.-.+-+.+..+. +--.-++++--.+.++++..+..++..+-|-+=.-+=-..
T Consensus 406 i~~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~---e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~~ 482 (1200)
T KOG0964|consen 406 INDTKEQENILQKEIEDLESELKEKLEEIKELESSIN---ETKGRMEEFDAENTELKRELDELQDKRKELWREEKKLRSL 482 (1200)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh---hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445567788877777777777777777776666 2333457777788999999999999888876543333334
Q ss_pred HHHHHHHHHHHHHHHHhc--hhhhhhhHHHHHHH
Q 009074 191 VEKLTQTVRELEEAVLAG--GAAANAVRDYQRKV 222 (544)
Q Consensus 191 VEKLtqTv~ELEEAvLag--gaaaNAvrdyqrq~ 222 (544)
++.+-+.+..-+-.+-++ ++.+|.+..-..=+
T Consensus 483 i~~~~~dl~~~~~~L~~~~~r~v~nGi~~v~~I~ 516 (1200)
T KOG0964|consen 483 IANLEEDLSRAEKNLRATMNRSVANGIDSVRKIK 516 (1200)
T ss_pred HHHHHHHHHHHHHHHHHhccchhhhhhHHHHHHH
Confidence 444444444444555553 55667765544333
No 186
>PF13166 AAA_13: AAA domain
Probab=40.32 E-value=5.3e+02 Score=28.19 Aligned_cols=80 Identities=21% Similarity=0.350 Sum_probs=33.4
Q ss_pred HHhhhhhHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHHHhhhHHHHH
Q 009074 157 DDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEAVLAGGAAANAVRDYQRKVQEMNEERKTLDREL 236 (544)
Q Consensus 157 ~dlQN~N~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLtqTv~ELEEAvLaggaaaNAvrdyqrq~~elneEkrtLerEL 236 (544)
.+......++...|+...+.-..+-....+|...+-. .-++..+.+.+ -...+.+..+...+.+.|.....+..++
T Consensus 318 ~~~~~~~~~~~~~~~~l~~~l~~l~~~L~~K~~~~~~-~~~~~~~~~~~---~~l~~~i~~~n~~i~~~n~~~~~~~~~~ 393 (712)
T PF13166_consen 318 EEFEEDKEELKSAIEALKEELEELKKALEKKIKNPSS-PIELEEINEDI---DELNSIIDELNELIEEHNEKIDNLKKEQ 393 (712)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-cccccchhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445556666655555544444434444333222 00011111111 1222334555555555555555555555
Q ss_pred hhhh
Q 009074 237 ARAK 240 (544)
Q Consensus 237 ARaK 240 (544)
..++
T Consensus 394 ~~~~ 397 (712)
T PF13166_consen 394 NELK 397 (712)
T ss_pred HHHH
Confidence 4444
No 187
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=40.31 E-value=4e+02 Score=26.98 Aligned_cols=27 Identities=33% Similarity=0.293 Sum_probs=19.1
Q ss_pred HHhhhhHHhhhhhHHHHHHHHHHHHHh
Q 009074 151 AKASMVDDLQNKNQELMKQIEICQEEN 177 (544)
Q Consensus 151 akA~~V~dlQN~N~EL~kQiEIcqEEn 177 (544)
+++-+++=|++.+.+|.+|||.|.-|-
T Consensus 119 ek~e~~~wl~~~Id~L~~QiE~~E~E~ 145 (233)
T PF04065_consen 119 EKEEARDWLKDSIDELNRQIEQLEAEI 145 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777888888888888776543
No 188
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=40.29 E-value=3.3e+02 Score=26.53 Aligned_cols=35 Identities=20% Similarity=0.286 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHHHHHHhhcCC
Q 009074 276 GEMQQLRDRLAITERTAKSEAQLKEKYHLRLKVLEESLRGS 316 (544)
Q Consensus 276 GEmqrLrdKLAiaERtAkaEaQLKeK~~lRLk~LEe~lk~~ 316 (544)
..+++|++-++-+. --+-|||++=|..+...+.-+
T Consensus 131 ~Rl~~L~~~l~~~d------v~~~ek~r~vlea~~~E~~yg 165 (251)
T PF11932_consen 131 ERLARLRAMLDDAD------VSLAEKFRRVLEAYQIEMEYG 165 (251)
T ss_pred HHHHHHHHhhhccC------CCHHHHHHHHHHHHHHHHHhC
Confidence 44566666654333 334588888888877766654
No 189
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=40.28 E-value=4e+02 Score=26.73 Aligned_cols=141 Identities=22% Similarity=0.240 Sum_probs=87.2
Q ss_pred ChhHHhhhccHHHHHHHHHHHHHhhhchHHHHHHhhhH---HHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHH
Q 009074 98 PPIEAILAPLEAELKLARQEIAKLQDDNKALDRLTKSK---EAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQ 174 (544)
Q Consensus 98 ppieaiiApLeaelk~~r~Ei~kLqddnkaLerltksK---EaALleAeR~v~~AlakA~~V~dlQN~N~EL~kQiEIcq 174 (544)
.-+-+-|+-|+.-=+....|..+||...-.+|-....= =..|.---+.+|-|+.+|-.|++ .+-+|+--.--..
T Consensus 4 ~dL~~~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~aK~l~e---EledLk~~~~~lE 80 (193)
T PF14662_consen 4 SDLLSCVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKAKALEE---ELEDLKTLAKSLE 80 (193)
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 34556677777766777777777777666665443211 12223333566788888888754 3445555555566
Q ss_pred HHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhchhhhhh-hHHHHHHHHHHHHHhhhHHHHHhhh-hhhhhh
Q 009074 175 EENKILDKMHRQKVAEVEKLTQTVRELEEAVLAGGAAANA-VRDYQRKVQEMNEERKTLDRELARA-KVTANR 245 (544)
Q Consensus 175 EEnkiLdk~hRQKvaEVEKLtqTv~ELEEAvLaggaaaNA-vrdyqrq~~elneEkrtLerELARa-Kv~AnR 245 (544)
|+|+=|-.=.||--.|.-.|...|..|.+---. ..+ .-.-+.+..+|..++.+|-+.|--. ..+.+|
T Consensus 81 E~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~k----l~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~~~ 149 (193)
T PF14662_consen 81 EENRSLLAQARQLEKEQQSLVAEIETLQEENGK----LLAERDGLKKRSKELATEKATLQRQLCEFESLICQR 149 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH----HHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 777777777777777777777777776553111 111 2345788899999999999988333 333343
No 190
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=39.87 E-value=2.7e+02 Score=26.24 Aligned_cols=26 Identities=27% Similarity=0.321 Sum_probs=0.0
Q ss_pred CCChhHHhhhccHHHHHHHHHHHHHh
Q 009074 96 DMPPIEAILAPLEAELKLARQEIAKL 121 (544)
Q Consensus 96 dmppieaiiApLeaelk~~r~Ei~kL 121 (544)
+-|+-.+.++.++.-+-..+.|.+.+
T Consensus 61 ~~~~~~~~~~~le~~~~~l~~ELael 86 (194)
T PF08614_consen 61 SGSVSSAQISSLEQKLAKLQEELAEL 86 (194)
T ss_dssp --------------------------
T ss_pred cccccccccccccccccccccccccc
Confidence 33444455566665444444444333
No 191
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=39.77 E-value=6.5e+02 Score=29.08 Aligned_cols=25 Identities=44% Similarity=0.755 Sum_probs=15.1
Q ss_pred ccchhhHHHHhhhhH---HHHHHHHHHH
Q 009074 261 VMPVKQWLEERRFLQ---GEMQQLRDRL 285 (544)
Q Consensus 261 VmPVKqWLEErR~LQ---GEmqrLrdKL 285 (544)
+--++.|++..+.+. ++++.++.++
T Consensus 568 ~~~l~~~~~~~~~~~~~~~~l~~~r~~~ 595 (908)
T COG0419 568 LQELKELLEELRLLRTRKEELEELRERL 595 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666 6666666443
No 192
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=39.29 E-value=3.5e+02 Score=25.85 Aligned_cols=76 Identities=25% Similarity=0.368 Sum_probs=43.2
Q ss_pred ccHHHHHHHHHHHHHhhhchHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHhHHHHHHhh
Q 009074 106 PLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKILDKMHR 185 (544)
Q Consensus 106 pLeaelk~~r~Ei~kLqddnkaLerltksKEaALleAeR~v~~AlakA~~V~dlQN~N~EL~kQiEIcqEEnkiLdk~hR 185 (544)
-+|.|++..+.++..+......-+..+..+...|..-++. |..+..+|..+.+-..+-..-++.++.
T Consensus 68 ~~E~E~~~~~~el~~~E~rl~~rE~~L~~~~~~L~~~e~~-------------l~~~~~~l~~~~~~l~~~~~e~~~~~~ 134 (201)
T PF12072_consen 68 ELERELKERRKELQRLEKRLQQREEQLDRRLEQLEKREEE-------------LEKKEEELEQRKEELEEREEELEELIE 134 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788888888888877666555555555555555444433 334445555554444445555555555
Q ss_pred hHHHHHHHH
Q 009074 186 QKVAEVEKL 194 (544)
Q Consensus 186 QKvaEVEKL 194 (544)
+...+.++.
T Consensus 135 ~~~~~Le~i 143 (201)
T PF12072_consen 135 EQQQELEEI 143 (201)
T ss_pred HHHHHHHHH
Confidence 544444443
No 193
>cd07657 F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), and Fer (Fes related) are cytoplasmic (or nonreceptor) tyrosine kinases that play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Although Fes and Fer show redundancy in their biological functions, they show differences in their expression patterns. Fer is ubiquitously expressed while Fes is expressed predominantly in myeloid and endothelial cells. Fes and Fer contain an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a posit
Probab=38.72 E-value=4e+02 Score=26.37 Aligned_cols=103 Identities=13% Similarity=0.251 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHHhhhccC-CCCChhHHhhhccHHHHHHHHHHHHHhhhchHH----HHHHhhhHHHHHHHHHHHHHHH
Q 009074 75 MAAQFAAEATLRRVHAAQKD-DDMPPIEAILAPLEAELKLARQEIAKLQDDNKA----LDRLTKSKEAALLEAERTVQVA 149 (544)
Q Consensus 75 lAAQfAAEAtLRRvha~QKd-ddmppieaiiApLeaelk~~r~Ei~kLqddnka----LerltksKEaALleAeR~v~~A 149 (544)
+-.|.-..|..|.+|+..=. .-.+||..++.-++...|.+..+..+||++... |++..|.=+.+.-+++..-+ -
T Consensus 70 iL~ete~~A~~~~~~ae~l~~~i~~~l~~l~~~~~~~rK~~~~~~~kl~~el~~~~~el~k~Kk~Y~~~~~e~e~Ar~-k 148 (237)
T cd07657 70 IMDSTDQLSKLIKQHAEALESGTLDKLTLLIKDKRKAKKAYQEERQQIDEQYKKLTDEVEKLKSEYQKLLEDYKAAKS-K 148 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 34455666677777775422 233567777888888888888899998887654 44555555555555553322 2
Q ss_pred HHHhh--------hhHHhhhhhHHHHHHHHHHHHHhH
Q 009074 150 LAKAS--------MVDDLQNKNQELMKQIEICQEENK 178 (544)
Q Consensus 150 lakA~--------~V~dlQN~N~EL~kQiEIcqEEnk 178 (544)
.++|. -|+..+++.++-...+.+|++|.-
T Consensus 149 ~e~a~~~~~~~~~~~eKak~k~~~~~~k~~~akNeY~ 185 (237)
T cd07657 149 FEEAVVKGGRGGRKLDKARDKYQKACRKLHLCHNDYV 185 (237)
T ss_pred HHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23332 456666666666666666666654
No 194
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=38.61 E-value=3.6e+02 Score=27.94 Aligned_cols=114 Identities=23% Similarity=0.351 Sum_probs=83.9
Q ss_pred HhHHHHHHHHHHHHH--HhhhccCCCCChhH----HhhhccHHHHHHHHHHHHHhhhchHHHHHHhhhHHHHHHHHHHHH
Q 009074 73 ASMAAQFAAEATLRR--VHAAQKDDDMPPIE----AILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTV 146 (544)
Q Consensus 73 ~alAAQfAAEAtLRR--vha~QKdddmppie----aiiApLeaelk~~r~Ei~kLqddnkaLerltksKEaALleAeR~v 146 (544)
+.|-..+.-|.-||- --+.+..-|+.-|| .+|+-+..++...++.+..+..|..+|+.=++.|-..|.-++..+
T Consensus 134 A~LydlL~kE~~lr~~R~~a~~r~~e~~~iE~~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL 213 (267)
T PF10234_consen 134 ASLYDLLGKEVELREERQRALARPLELNEIEKALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRL 213 (267)
T ss_pred HHHHHHHhchHhHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444554442 23344444555444 377889999999999999999999999999999999999999888
Q ss_pred HHHHH-HhhhhHHhhhhhHHHHHHHHHHHHHhHHHHHHhhh
Q 009074 147 QVALA-KASMVDDLQNKNQELMKQIEICQEENKILDKMHRQ 186 (544)
Q Consensus 147 ~~Ala-kA~~V~dlQN~N~EL~kQiEIcqEEnkiLdk~hRQ 186 (544)
++--. |=.-.||...--.||.++-++|-+--+-|+-+..|
T Consensus 214 ~sLq~vRPAfmdEyEklE~EL~~lY~~Y~~kfRNl~yLe~q 254 (267)
T PF10234_consen 214 QSLQSVRPAFMDEYEKLEEELQKLYEIYVEKFRNLDYLEHQ 254 (267)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 76432 34455888888889999999998888887776543
No 195
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=38.14 E-value=47 Score=27.92 Aligned_cols=38 Identities=32% Similarity=0.358 Sum_probs=31.6
Q ss_pred CCChhHHhhhccHHHHHHHHHHHHHhhhchHHHHHHhh
Q 009074 96 DMPPIEAILAPLEAELKLARQEIAKLQDDNKALDRLTK 133 (544)
Q Consensus 96 dmppieaiiApLeaelk~~r~Ei~kLqddnkaLerltk 133 (544)
+.++....+..|+++|+.++.+++.+++...+++..++
T Consensus 64 ~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~ 101 (104)
T PF13600_consen 64 EKESDSPELKELEEELEALEDELAALQDEIQALEAQIA 101 (104)
T ss_pred ccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556778999999999999999999999999876543
No 196
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=37.94 E-value=47 Score=27.79 Aligned_cols=27 Identities=30% Similarity=0.405 Sum_probs=24.5
Q ss_pred hHHhhhhhHHHHHHHHHHHHHhHHHHH
Q 009074 156 VDDLQNKNQELMKQIEICQEENKILDK 182 (544)
Q Consensus 156 V~dlQN~N~EL~kQiEIcqEEnkiLdk 182 (544)
||-|.+++.||+.++...+.||.+|..
T Consensus 16 VevLK~~I~eL~~~n~~Le~EN~~Lk~ 42 (59)
T PF01166_consen 16 VEVLKEQIAELEERNSQLEEENNLLKQ 42 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 688999999999999999999999854
No 197
>cd07675 F-BAR_FNBP1L The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 1-Like. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FormiN Binding Protein 1-Like (FNBP1L), also known as Toca-1 (Transducer of Cdc42-dependent actin assembly), forms a complex with neural Wiskott-Aldrich syndrome protein (N-WASP). The FNBP1L/N-WASP complex induces the formation of filopodia and endocytic vesicles. FNBP1L is required for Cdc42-induced actin assembly and is essential for autophagy of intracellular pathogens. It contains an N-terminal F-BAR domain, a central Cdc42-binding HR1 domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=37.81 E-value=4.6e+02 Score=26.73 Aligned_cols=30 Identities=23% Similarity=0.060 Sum_probs=22.6
Q ss_pred CChhHHhhhccHHHHHHHHHHHHHhhhchH
Q 009074 97 MPPIEAILAPLEAELKLARQEIAKLQDDNK 126 (544)
Q Consensus 97 mppieaiiApLeaelk~~r~Ei~kLqddnk 126 (544)
.+||.-...+|+.+.|..=+...+||....
T Consensus 94 ~~~l~~~~~~l~~~rk~~~~~~~klqk~l~ 123 (252)
T cd07675 94 YGELMRYSHDLKGERKMHLQEGRKAQQYLD 123 (252)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777788888888888777777777554
No 198
>PF05130 FlgN: FlgN protein; InterPro: IPR007809 Flagella synthesis protein FlgN is an export chaperone involved in flagellar synthesis []. This entry represents a FlgN-like domain, consisting of a 4 long helices bundle, where the last helix is shorter than the three others.; GO: 0009296 flagellum assembly, 0019861 flagellum; PDB: 2FUP_A 3OPC_A.
Probab=37.57 E-value=2.4e+02 Score=23.44 Aligned_cols=96 Identities=28% Similarity=0.314 Sum_probs=54.7
Q ss_pred hhHHhhhccHHHHHHHHHHHHHh--------hhchHHHHHHhhhHHHHHHHHHHH---HHHHHHHhh-------------
Q 009074 99 PIEAILAPLEAELKLARQEIAKL--------QDDNKALDRLTKSKEAALLEAERT---VQVALAKAS------------- 154 (544)
Q Consensus 99 pieaiiApLeaelk~~r~Ei~kL--------qddnkaLerltksKEaALleAeR~---v~~AlakA~------------- 154 (544)
+++.++.-|+.++..|..=+.-+ ..|...|+.++..|+..+.+.... .+..+.+..
T Consensus 2 ~~~~L~~~L~~~~~~~~~L~~ll~~e~~~l~~~d~~~l~~~~~~k~~l~~~l~~le~~r~~~~~~~~~~~~~~~l~~~~~ 81 (143)
T PF05130_consen 2 AIEELIELLEEQIELLQELLELLEEEREALISGDIDELEELVEEKQELLEELRELEKQRQQLLAKLGAEPEEATLSELIE 81 (143)
T ss_dssp -HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--SCHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccHHHHHh
Confidence 56667777777777776433322 236667788888888776655433 222222222
Q ss_pred hhHHhhhhhHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHH
Q 009074 155 MVDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKL 194 (544)
Q Consensus 155 ~V~dlQN~N~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKL 194 (544)
--.+++....+|..-++.|+..|..-..+-++...-|..+
T Consensus 82 ~~~~l~~~~~~l~~~~~~~~~~n~~N~~ll~~~~~~~~~~ 121 (143)
T PF05130_consen 82 EREELQALWRELRELLEELQELNERNQQLLEQALEFVQQL 121 (143)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2255666666677777777766666555554444444333
No 199
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=37.19 E-value=5.1e+02 Score=27.14 Aligned_cols=215 Identities=11% Similarity=0.095 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhhhhhhhhccccchhccCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHhHHHHHHH---
Q 009074 5 ISNLLCSLFFAMSKITILCSMGADFALNLPVFPKLTEELSKVEEKLKLAENLIETKNLEIKKINDEKRASMAAQFAA--- 81 (544)
Q Consensus 5 ~~~~~~~l~~A~sei~~lkv~~~~e~lKdKaveEl~~El~K~dEKLk~tE~lle~kNLEiKklndEKK~alAAQfAA--- 81 (544)
|.|.++..+..+. .+....--..+.+-+.+++..+..+|...|..|..--.+-.-+..+-...+..+.+.
T Consensus 139 i~n~l~~~yi~~~-------~~~~~~~~~~~~~fl~~ql~~~~~~L~~ae~~l~~f~~~~~~~~~~~~~~~~~~l~~l~~ 211 (498)
T TIGR03007 139 VVQTLLTIFVEET-------LGSKRQDSDSAQRFIDEQIKTYEKKLEAAENRLKAFKQENGGILPDQEGDYYSEISEAQE 211 (498)
T ss_pred HHHHHHHHHHHhh-------cccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCccchhhHHHHHHHHHH
Q ss_pred ---------------HHHHHHHhhhccCCCCChhHHhhhccHHHHHHHHHHHHHhhhchHHHHHHhhhHHHHHHHHHHHH
Q 009074 82 ---------------EATLRRVHAAQKDDDMPPIEAILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTV 146 (544)
Q Consensus 82 ---------------EAtLRRvha~QKdddmppieaiiApLeaelk~~r~Ei~kLqddnkaLerltksKEaALleAeR~v 146 (544)
-.+|+.-.+.+++.-...-...+.+|..+|...+.+++.|...-..=.-..+.-.+.+...+..+
T Consensus 212 ~l~~~~~~l~~~~a~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~l~~~y~~~hP~v~~l~~qi~~l~~~l 291 (498)
T TIGR03007 212 ELEAARLELNEAIAQRDALKRQLGGEEPVLLAGSSVANSELDGRIEALEKQLDALRLRYTDKHPDVIATKREIAQLEEQK 291 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCcCcccccCCCchHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHh-----------hhhHHhhhhhHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhchhhhhhh
Q 009074 147 QVALAKA-----------SMVDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEAVLAGGAAANAV 215 (544)
Q Consensus 147 ~~AlakA-----------~~V~dlQN~N~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLtqTv~ELEEAvLaggaaaNAv 215 (544)
+...... .+..+|+....++..+++..+.+-.-|.+.--+--.++.++...-.++..------.+-+..
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~el~~L~Re~~~~~~~Y 371 (498)
T TIGR03007 292 EEEGSAKNGGPERGEIANPVYQQLQIELAEAEAEIASLEARVAELTARIERLESLLRTIPEVEAELTQLNRDYEVNKSNY 371 (498)
T ss_pred HhhccccccCcccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHH
Q 009074 216 RDYQRKVQEMN 226 (544)
Q Consensus 216 rdyqrq~~eln 226 (544)
..|..+..+..
T Consensus 372 ~~l~~r~eea~ 382 (498)
T TIGR03007 372 EQLLTRRESAE 382 (498)
T ss_pred HHHHHHHHHHH
No 200
>PLN02939 transferase, transferring glycosyl groups
Probab=37.05 E-value=8.5e+02 Score=29.63 Aligned_cols=141 Identities=26% Similarity=0.351 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHhHHHHH---HhhhHHHHHHH--------------HHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHHH
Q 009074 166 LMKQIEICQEENKILDK---MHRQKVAEVEK--------------LTQTVRELEEAVLAGGAAANAVRDYQRKVQEMNEE 228 (544)
Q Consensus 166 L~kQiEIcqEEnkiLdk---~hRQKvaEVEK--------------LtqTv~ELEEAvLaggaaaNAvrdyqrq~~elneE 228 (544)
|-.++....|||..|.. ..+++..+|.. |..+++|||--+.+.-+ +...-.-.|+.-+-+.
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 301 (977)
T PLN02939 224 LSKELDVLKEENMLLKDDIQFLKAELIEVAETEERVFKLEKERSLLDASLRELESKFIVAQE--DVSKLSPLQYDCWWEK 301 (977)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--hhhhccchhHHHHHHH
Confidence 56778888899988753 23444444332 45566666655543211 1111111122224444
Q ss_pred hhhHHHHHhhhhhhhhhhhhhhhhccccCCCCccchhhHHHH----------hhhhHHHHHHHHHHHHHhHHhhhHHHHH
Q 009074 229 RKTLDRELARAKVTANRVATVVANEWKDANDKVMPVKQWLEE----------RRFLQGEMQQLRDRLAITERTAKSEAQL 298 (544)
Q Consensus 229 krtLerELARaKv~AnRVA~vVAnEWKDendkVmPVKqWLEE----------rR~LQGEmqrLrdKLAiaERtAkaEaQL 298 (544)
..+|..=|.++.--+-.-|.| -..-.|=-|||=-++--|+| .++||.-+..|++.|.-+.-.-.+.-|+
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (977)
T PLN02939 302 VENLQDLLDRATNQVEKAALV-LDQNQDLRDKVDKLEASLKEANVSKFSSYKVELLQQKLKLLEERLQASDHEIHSYIQL 380 (977)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-hccchHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 445555554444333332222 22333333344333333333 2567777888888877665555554444
Q ss_pred H----HHHHHHHHHH
Q 009074 299 K----EKYHLRLKVL 309 (544)
Q Consensus 299 K----eK~~lRLk~L 309 (544)
- +-||-.|+.|
T Consensus 381 ~~~~~~~~~~~~~~~ 395 (977)
T PLN02939 381 YQESIKEFQDTLSKL 395 (977)
T ss_pred HHHHHHHHHHHHHHH
Confidence 2 3455555544
No 201
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=37.04 E-value=4.1e+02 Score=26.00 Aligned_cols=78 Identities=18% Similarity=0.282 Sum_probs=49.3
Q ss_pred HHhhhHHHHHhhhhhhhhhhhhhhhhccccCCCCccchhhHHHHhhhhHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHH
Q 009074 227 EERKTLDRELARAKVTANRVATVVANEWKDANDKVMPVKQWLEERRFLQGEMQQLRDRLAITERTAKSEAQLKEKYHLRL 306 (544)
Q Consensus 227 eEkrtLerELARaKv~AnRVA~vVAnEWKDendkVmPVKqWLEErR~LQGEmqrLrdKLAiaERtAkaEaQLKeK~~lRL 306 (544)
..+.+-+.||.-|...-+||=.-+..-|.+-.+-+=+|..||-+ ....++.|++-|.-|.-..+--.-|...-+..|
T Consensus 146 ~~~~~Ae~El~~A~~LL~~v~~~~~~~~~~~~~l~~~i~~~L~~---~~~kL~Dl~~~l~eA~~~~~ea~~ln~~n~~~l 222 (264)
T PF06008_consen 146 PQRQNAEDELKEAEDLLSRVQKWFQKPQQENESLAEAIRDDLND---YNAKLQDLRDLLNEAQNKTREAEDLNRANQKNL 222 (264)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677888888888876655555555554444567788765 456777788777777665555555554444444
Q ss_pred H
Q 009074 307 K 307 (544)
Q Consensus 307 k 307 (544)
.
T Consensus 223 ~ 223 (264)
T PF06008_consen 223 E 223 (264)
T ss_pred H
Confidence 3
No 202
>cd08325 CARD_CASP1-like Caspase activation and recruitment domain found in Caspase-1 and related proteins. Caspase activation and recruitment domain (CARD) similar to those found in Caspase-1 (CASP1, ICE) and related proteins, including CARD-only proteins such as ICEBERG or CARD18, INCA (CARD17), CARD16 (COP1, PSEUDO-ICE), CARD8 (DACAR, NDPP1, TUCAN), and CARD12 (NLRC4), as well as ICE-like caspases such as CASP12, CASP5 (ICH-3) and CASP4 (TX, ICH-2). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. CASP1 plays a central role in the cellular response to a wide variety of microbial and non-microbial stimuli, being activated by the inflammasome or the pyroptosome. CARD8 binds itself and the initiator caspase-9, interfering with the binding of APAF-1 and suppressing caspase-9 activation. CARD12 is a Nod-like receptor (NLR) that plays an important role in the innate immune response to Gram-negative bacteria. Caspase-4 (CASP4), -5 (CASP5),
Probab=36.95 E-value=16 Score=30.73 Aligned_cols=44 Identities=25% Similarity=0.438 Sum_probs=30.8
Q ss_pred CCCCchhHHHHHHHHHHHHHHhhhhccccc--ccChhHH-HHHHHHh
Q 009074 431 TEDSVPGVLYDLLQKEVVALRKAGHEKDQS--LKDKDDA-IEILAKK 474 (544)
Q Consensus 431 ~~D~Vsg~LYD~LQKEVi~LRKac~eKdqs--LkdKdda-IeML~KK 474 (544)
+.+++.|+|.|+|++.|++..-....+... -.||-.. |.++.+|
T Consensus 14 ~~~~i~~llD~Ll~~~Vl~~~E~e~i~~~~~t~~dkar~Lid~v~~K 60 (83)
T cd08325 14 GKGVINGLLDDLLEKNVLNEEEMEKIKEENNTIMDKARVLVDSVTEK 60 (83)
T ss_pred hHhhHHHHHHHHHHcCCCCHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 458999999999999999998777666643 3444333 3444444
No 203
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=36.25 E-value=4.1e+02 Score=25.80 Aligned_cols=66 Identities=20% Similarity=0.368 Sum_probs=36.7
Q ss_pred HhhhhhHHHHHHHHHHHHHhHHHHHHhhh--HHHHHHHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHHHhhhHHHH
Q 009074 158 DLQNKNQELMKQIEICQEENKILDKMHRQ--KVAEVEKLTQTVRELEEAVLAGGAAANAVRDYQRKVQEMNEERKTLDRE 235 (544)
Q Consensus 158 dlQN~N~EL~kQiEIcqEEnkiLdk~hRQ--KvaEVEKLtqTv~ELEEAvLaggaaaNAvrdyqrq~~elneEkrtLerE 235 (544)
.+|+....|.|--+-|+..|+=+++...+ ...+++|+...+.... .+|+..+..++.-...++++
T Consensus 117 ~~~~~~~~l~KaK~~Y~~~c~e~e~~~~~~~s~k~~eK~~~K~~ka~-------------~~Y~~~v~~~~~~~~~~~~~ 183 (261)
T cd07648 117 AIQTTTAALQKAKEAYHARCLELERLRRENASPKEIEKAEAKLKKAQ-------------DEYKALVEKYNNIRADFETK 183 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444433222 1345666666654432 47999999998888777666
Q ss_pred H
Q 009074 236 L 236 (544)
Q Consensus 236 L 236 (544)
+
T Consensus 184 m 184 (261)
T cd07648 184 M 184 (261)
T ss_pred H
Confidence 5
No 204
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=36.16 E-value=6.2e+02 Score=27.81 Aligned_cols=152 Identities=19% Similarity=0.227 Sum_probs=84.1
Q ss_pred hhhccCCCCChhHHhhhccHHHHHHH------------HHHHHHhhhchHHHHHHhhhHHHHHHHHHHHHHHHH-----H
Q 009074 89 HAAQKDDDMPPIEAILAPLEAELKLA------------RQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVAL-----A 151 (544)
Q Consensus 89 ha~QKdddmppieaiiApLeaelk~~------------r~Ei~kLqddnkaLerltksKEaALleAeR~v~~Al-----a 151 (544)
|..+-.+-.|+|+..|+-+|.+...+ +.-+.+|+++...|+..+..==.-+.++..++-.-+ -
T Consensus 159 ~~~~~G~a~~~le~~l~~~e~~f~~f~~l~~~Gd~~~A~e~l~~l~~~~~~l~~~~~~iP~l~~~~~~~~P~ql~el~~g 238 (569)
T PRK04778 159 NRFSFGPALDELEKQLENLEEEFSQFVELTESGDYVEAREILDQLEEELAALEQIMEEIPELLKELQTELPDQLQELKAG 238 (569)
T ss_pred cCccccchHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 45667788999999999999988754 445666777776666666544444444444441111 1
Q ss_pred Hhhhh--------HHhhhhhHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhchhhhhh----hHHHH
Q 009074 152 KASMV--------DDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEAVLAGGAAANA----VRDYQ 219 (544)
Q Consensus 152 kA~~V--------~dlQN~N~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLtqTv~ELEEAvLaggaaaNA----vrdyq 219 (544)
+.-|+ .++..+.+.|..||.-|..--.=|+ -..--..+.++...|..|-+.+-.--.|-+- .....
T Consensus 239 y~~m~~~gy~~~~~~i~~~i~~l~~~i~~~~~~l~~l~--l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~ 316 (569)
T PRK04778 239 YRELVEEGYHLDHLDIEKEIQDLKEQIDENLALLEELD--LDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLP 316 (569)
T ss_pred HHHHHHcCCCCCCCChHHHHHHHHHHHHHHHHHHHhcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 11122 2345555555555554432211111 0001122344555555555555444444444 34455
Q ss_pred HHHHHHHHHhhhHHHHHhhhhhh
Q 009074 220 RKVQEMNEERKTLDRELARAKVT 242 (544)
Q Consensus 220 rq~~elneEkrtLerELARaKv~ 242 (544)
..+..+.+....|..|+.+.+-+
T Consensus 317 ~~l~~~~e~~~~l~~Ei~~l~~s 339 (569)
T PRK04778 317 DFLEHAKEQNKELKEEIDRVKQS 339 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc
Confidence 66677888888888898887654
No 205
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=36.00 E-value=2e+02 Score=22.13 Aligned_cols=48 Identities=23% Similarity=0.259 Sum_probs=30.0
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHH
Q 009074 127 ALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQE 175 (544)
Q Consensus 127 aLerltksKEaALleAeR~v~~AlakA~~V~dlQN~N~EL~kQiEIcqE 175 (544)
-.-|. ++.+||--.=++.-+-....-..|.+|+..|..|..+|...+.
T Consensus 6 ~~rR~-rNr~AA~r~R~rkk~~~~~le~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 6 RERRE-RNREAARRSRQRKKQREEELEQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33444 7777776666666665555566666677777766666655544
No 206
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=35.98 E-value=6.5e+02 Score=27.95 Aligned_cols=36 Identities=22% Similarity=0.299 Sum_probs=16.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHH
Q 009074 37 PKLTEELSKVEEKLKLAENLIETKNLEIKKINDEKR 72 (544)
Q Consensus 37 eEl~~El~K~dEKLk~tE~lle~kNLEiKklndEKK 72 (544)
..+.+++..++.++...+..++...-++..+..+..
T Consensus 205 ~~~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele 240 (650)
T TIGR03185 205 SSILSEIEALEAELKEQSEKYEDLAQEIAHLRNELE 240 (650)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555444444444444444444444
No 207
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=35.91 E-value=3.6e+02 Score=25.01 Aligned_cols=52 Identities=21% Similarity=0.143 Sum_probs=36.1
Q ss_pred HHHHHHHHhhhhhhhhhhccccchhccCCchhhhHHHHHHHHHHHHHHHHHhhhhhhh
Q 009074 6 SNLLCSLFFAMSKITILCSMGADFALNLPVFPKLTEELSKVEEKLKLAENLIETKNLE 63 (544)
Q Consensus 6 ~~~~~~l~~A~sei~~lkv~~~~e~lKdKaveEl~~El~K~dEKLk~tE~lle~kNLE 63 (544)
+.++-++|.+++.+ .-++ .+ -|.-+.+..+.+.+++++|+.+...++...-.
T Consensus 2 ~~~~~~~~~s~~~~-~~~~---~e--~D~~F~~~~~~~~~le~~Lk~l~~~~~~l~~~ 53 (236)
T PF09325_consen 2 KGLFGKLFDSVSNS-SPKM---KE--PDEWFEEIKDYVDKLEEQLKKLYKSLERLVKR 53 (236)
T ss_pred hhHHHHHHHHHHcc-CCCC---CC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677777776 3333 22 27778888999999999999888777654433
No 208
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=35.68 E-value=3.6e+02 Score=24.90 Aligned_cols=64 Identities=23% Similarity=0.319 Sum_probs=44.9
Q ss_pred hhHHhhhccHHHHHHHHHHHHHhhhchHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHH
Q 009074 99 PIEAILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEI 172 (544)
Q Consensus 99 pieaiiApLeaelk~~r~Ei~kLqddnkaLerltksKEaALleAeR~v~~AlakA~~V~dlQN~N~EL~kQiEI 172 (544)
.+..-+|.|+-.|-.++..+.-|.-++..|.....+ +.++ ....---|.|||-++.|+.++++-
T Consensus 13 el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~-----L~~q-----~~s~~qr~~eLqaki~ea~~~le~ 76 (107)
T PF09304_consen 13 ELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQS-----LQAQ-----NASRNQRIAELQAKIDEARRNLED 76 (107)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHH-----HHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456678999999999999888887777766555433 2222 222234468999999999999885
No 209
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=35.08 E-value=63 Score=32.44 Aligned_cols=98 Identities=22% Similarity=0.308 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhh---hHHHHhHHHHHHHHHHHHHHhhhc---------------cCCCC
Q 009074 36 FPKLTEELSKVEEKLKLAENLIETKNLEIKKIN---DEKRASMAAQFAAEATLRRVHAAQ---------------KDDDM 97 (544)
Q Consensus 36 veEl~~El~K~dEKLk~tE~lle~kNLEiKkln---dEKK~alAAQfAAEAtLRRvha~Q---------------Kdddm 97 (544)
+++|..+|..+..++.-.+.+.+...-++-+++ +.-...-....-+...-+.++... .|.+|
T Consensus 1 l~~lq~~l~~l~~~~~~~~~L~~kLE~DL~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~sp~ss~~~~~~~~si 80 (248)
T PF08172_consen 1 LEELQKELSELEAKLEEQKELNAKLENDLAKVQASSSASRSFNDGASMASGATRQIPNSGRSGSLSPTSSIIGGGGDSSI 80 (248)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCcccccccchhhccCccccCCCCCCccCCCCCCcccH
Q ss_pred ChhHH---------------hhhccHHHHHHHHHHHHHhhhchHHHHHHhh
Q 009074 98 PPIEA---------------ILAPLEAELKLARQEIAKLQDDNKALDRLTK 133 (544)
Q Consensus 98 ppiea---------------iiApLeaelk~~r~Ei~kLqddnkaLerltk 133 (544)
.||-. -+.-+..++...++|+.+|+-||--|+-=+|
T Consensus 81 LpIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiR 131 (248)
T PF08172_consen 81 LPIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIR 131 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 210
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.92 E-value=69 Score=33.52 Aligned_cols=54 Identities=28% Similarity=0.526 Sum_probs=39.8
Q ss_pred HHHHhhhchHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHhHHHHHHhhhHHHHH
Q 009074 117 EIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEV 191 (544)
Q Consensus 117 Ei~kLqddnkaLerltksKEaALleAeR~v~~AlakA~~V~dlQN~N~EL~kQiEIcqEEnkiLdk~hRQKvaEV 191 (544)
-|++|.|.+..|+-++-.|+.-|+|-...| .+|+-- +|.++.|++.|+-+|.-+
T Consensus 226 ~i~~lkeeia~Lkk~L~qkdq~ileKdkqi-----------------snLKad----~e~~~~~ek~Hke~v~qL 279 (305)
T KOG3990|consen 226 KIQKLKEEIARLKKLLHQKDQLILEKDKQI-----------------SNLKAD----KEYQKELEKKHKERVQQL 279 (305)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHhhhhhh-----------------hccCcc----hhHHHHHHHHHHHHHHHH
Confidence 478888999999999999999988876433 233322 466688999999776543
No 211
>PF13514 AAA_27: AAA domain
Probab=34.23 E-value=8.6e+02 Score=28.85 Aligned_cols=185 Identities=21% Similarity=0.305 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHHhhhchHHHHHHhhh-------------HHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHH
Q 009074 109 AELKLARQEIAKLQDDNKALDRLTKS-------------KEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQE 175 (544)
Q Consensus 109 aelk~~r~Ei~kLqddnkaLerltks-------------KEaALleAeR~v~~AlakA~~V~dlQN~N~EL~kQiEIcqE 175 (544)
.++...++.|+.++.+...++.-+.. -+..+......+..+-....-++.++.+..++..+++.++.
T Consensus 743 ~~~~~~~~ri~~~~~~~~~f~~~~~~L~~~l~~~~~~~~~~~~~~~L~~~l~~a~~~~~~~~~l~~~~~~~~~~~~~~~~ 822 (1111)
T PF13514_consen 743 AEIRELRRRIEQMEADLAAFEEQVAALAERLGPDLPEDPAEEALEALRARLEEAREAQEERERLQEQLEELEEELEQAEE 822 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555556666666666655542211 12344444445555555555555566666666655555544
Q ss_pred HhHHHHHH---------------hh---hHHHHHHHHHHHHHHHHHHHHh--chhhhhh----------------hHHHH
Q 009074 176 ENKILDKM---------------HR---QKVAEVEKLTQTVRELEEAVLA--GGAAANA----------------VRDYQ 219 (544)
Q Consensus 176 EnkiLdk~---------------hR---QKvaEVEKLtqTv~ELEEAvLa--ggaaaNA----------------vrdyq 219 (544)
+-..+..- -+ ....+...|.+.+..++..+.. +|..... +...+
T Consensus 823 ~l~~~~~~l~~L~~~a~~~~~e~l~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~l~~e~~~~d~~~l~~~l~~l~ 902 (1111)
T PF13514_consen 823 ELEELEAELAELLEQAGVEDEEELREAEERAEERRELREELEDLERQLERQADGLDLEELEEELEELDPDELEAELEELE 902 (1111)
T ss_pred HHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHhhccCHHHHHHHHHHHH
Confidence 43222111 11 2334566677777777777733 2211111 22233
Q ss_pred HHHHHHHHHhhhHHHHHhhhhhhhhhhhhhhhhccccCCCCccchhhHHHHhhhhHHHHHHHHHHHHHhHHhhhHHHHHH
Q 009074 220 RKVQEMNEERKTLDRELARAKVTANRVATVVANEWKDANDKVMPVKQWLEERRFLQGEMQQLRDRLAITERTAKSEAQLK 299 (544)
Q Consensus 220 rq~~elneEkrtLerELARaKv~AnRVA~vVAnEWKDendkVmPVKqWLEErR~LQGEmqrLrdKLAiaERtAkaEaQLK 299 (544)
.++..++.+...|..++++++.-.+.+. + .+ .+-.-.+++.-+..+|..+-.+.....-+...=.+..
T Consensus 903 ~~l~~l~~~~~~l~~~~~~~~~~l~~l~----~-----~~---~~a~l~~e~e~~~a~l~~~~~~~~~~~la~~lL~~a~ 970 (1111)
T PF13514_consen 903 EELEELEEELEELQEERAELEQELEALE----G-----DD---DAAELEQEREEAEAELEELAEEWAALRLAAELLEEAI 970 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh----C-----Cc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555555554444333211 1 11 3346677777888888888777766665555555555
Q ss_pred HHHHHH
Q 009074 300 EKYHLR 305 (544)
Q Consensus 300 eK~~lR 305 (544)
++|+..
T Consensus 971 ~~~r~~ 976 (1111)
T PF13514_consen 971 ERYREE 976 (1111)
T ss_pred HHHHHH
Confidence 555543
No 212
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=33.98 E-value=8.6e+02 Score=28.80 Aligned_cols=193 Identities=22% Similarity=0.318 Sum_probs=98.8
Q ss_pred cHHHHHHHH----HHHHHhhhchHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhH-HhhhhhHHHHHHHHHHH-HHhHHH
Q 009074 107 LEAELKLAR----QEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVD-DLQNKNQELMKQIEICQ-EENKIL 180 (544)
Q Consensus 107 Leaelk~~r----~Ei~kLqddnkaLerltksKEaALleAeR~v~~AlakA~~V~-dlQN~N~EL~kQiEIcq-EEnkiL 180 (544)
||++++..| +.-.+|.-.-.-||+|-..-.+--.||| -++.|+++|-+|. -+..-+|.=+..+.-.| ++-.-|
T Consensus 78 le~e~~~lre~sl~qkmrLe~qa~Ele~l~~ae~agraEae-~Lraala~ae~~R~~lEE~~q~ELee~q~~Hqeql~~L 156 (739)
T PF07111_consen 78 LEEEVRALRETSLQQKMRLEAQAEELEALARAEKAGRAEAE-ELRAALAGAEVVRKNLEEGSQRELEEAQRLHQEQLSSL 156 (739)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHH-HHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 455554443 2223333333455666554445555554 4888999998884 22222222122222222 222233
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHhc----hhhhhhhHHHHHHHHHHHHHhhhHHHHHhhhhhhhhhhhhhhhhcccc
Q 009074 181 DKMHRQKVAEVEKLTQTVRELEEAVLAG----GAAANAVRDYQRKVQEMNEERKTLDRELARAKVTANRVATVVANEWKD 256 (544)
Q Consensus 181 dk~hRQKvaEVEKLtqTv~ELEEAvLag----gaaaNAvrdyqrq~~elneEkrtLerELARaKv~AnRVA~vVAnEWKD 256 (544)
.. ---.++..|+..+++||+.+-.- +--++.+..-|+....|.++.+.-..+|..--..+++.=.-|-.---+
T Consensus 157 t~---aHq~~l~sL~~k~~~Le~~L~~le~~r~~e~~~La~~q~e~d~L~~qLsk~~~~le~q~tlv~~LR~YvGeq~p~ 233 (739)
T PF07111_consen 157 TQ---AHQEALASLTSKAEELEKSLESLETRRAGEAKELAEAQREADLLREQLSKTQEELEAQVTLVEQLRKYVGEQVPP 233 (739)
T ss_pred HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhCCc
Confidence 33 33467888999999999866441 222344444444444444444444444432222222222223111111
Q ss_pred CCCCccchhhHHHHhhhhHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHHHHHHhhc
Q 009074 257 ANDKVMPVKQWLEERRFLQGEMQQLRDRLAITERTAKSEAQLKEKYHLRLKVLEESLR 314 (544)
Q Consensus 257 endkVmPVKqWLEErR~LQGEmqrLrdKLAiaERtAkaEaQLKeK~~lRLk~LEe~lk 314 (544)
+ .+--.|--||--|..=||.|++.-+ +=..--|=++.|+..|.+.|.
T Consensus 234 ~----~~~~~we~Er~~L~~tVq~L~edR~-------~L~~T~ELLqVRvqSLt~IL~ 280 (739)
T PF07111_consen 234 E----VHSQAWEPEREELLETVQHLQEDRD-------ALQATAELLQVRVQSLTDILT 280 (739)
T ss_pred c----cccHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 1 1234688888888888888875422 222234668999999877763
No 213
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=33.94 E-value=4.2e+02 Score=28.97 Aligned_cols=78 Identities=21% Similarity=0.382 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHHHhhhHHHHHhhhhhhhhhhhhhhhhccccCCCCccchhh
Q 009074 187 KVAEVEKLTQTVRELEEAVLAGGAAANAVRDYQRKVQEMNEERKTLDRELARAKVTANRVATVVANEWKDANDKVMPVKQ 266 (544)
Q Consensus 187 KvaEVEKLtqTv~ELEEAvLaggaaaNAvrdyqrq~~elneEkrtLerELARaKv~AnRVA~vVAnEWKDendkVmPVKq 266 (544)
=+.-|..|.-+|.+|.--|...|.. --.+|+..+..+...+..+|...+-+.+++--+...-|.-+=++|
T Consensus 218 Ll~kVdDLQD~VE~LRkDV~~RgvR-----p~~~qle~v~kdi~~a~~~L~~m~~~i~~~kp~WkKiWE~EL~~V----- 287 (424)
T PF03915_consen 218 LLTKVDDLQDLVEDLRKDVVQRGVR-----PSPKQLETVAKDISRASKELKKMKEYIKTEKPIWKKIWESELQKV----- 287 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCc-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH-----
Confidence 3555777888888887777766654 445888889999999999998888888876555555555553333
Q ss_pred HHHHhhhhH
Q 009074 267 WLEERRFLQ 275 (544)
Q Consensus 267 WLEErR~LQ 275 (544)
-+|+.||.
T Consensus 288 -~eEQqfL~ 295 (424)
T PF03915_consen 288 -CEEQQFLK 295 (424)
T ss_dssp -HHHHHHHH
T ss_pred -HHHHHHHH
Confidence 45666653
No 214
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.84 E-value=2.2e+02 Score=30.06 Aligned_cols=37 Identities=35% Similarity=0.447 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHhhhhcccccccChhHHHHHHHHh
Q 009074 438 VLYDLLQKEVVALRKAGHEKDQSLKDKDDAIEILAKK 474 (544)
Q Consensus 438 ~LYD~LQKEVi~LRKac~eKdqsLkdKddaIeML~KK 474 (544)
|....|..||-+|.|.-|+|||-+-+||--|--|--+
T Consensus 225 V~i~~lkeeia~Lkk~L~qkdq~ileKdkqisnLKad 261 (305)
T KOG3990|consen 225 VKIQKLKEEIARLKKLLHQKDQLILEKDKQISNLKAD 261 (305)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHhhhhhhhccCcc
Confidence 5667789999999999999999999999888776543
No 215
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=33.71 E-value=3.5e+02 Score=24.20 Aligned_cols=48 Identities=19% Similarity=0.336 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHhc-hhhhhhhHHHHHHHHHHHHHhhhHHHHHh
Q 009074 190 EVEKLTQTVRELEEAVLAG-GAAANAVRDYQRKVQEMNEERKTLDRELA 237 (544)
Q Consensus 190 EVEKLtqTv~ELEEAvLag-gaaaNAvrdyqrq~~elneEkrtLerELA 237 (544)
+++....++.+.+.....- ..--+-+.+.+.++.+|+...++|...|-
T Consensus 81 ~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE 129 (132)
T PF07926_consen 81 EAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLE 129 (132)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333444444444333332 33334477888888899988888887764
No 216
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=33.62 E-value=2.8e+02 Score=24.48 Aligned_cols=62 Identities=18% Similarity=0.248 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHhhhh-HHhhhhhHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHH
Q 009074 137 AALLEAERTVQVALAKASMV-DDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTV 198 (544)
Q Consensus 137 aALleAeR~v~~AlakA~~V-~dlQN~N~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLtqTv 198 (544)
..++-.=|..|-+++|=+=| +-|...+..|+.++...+++++-|.........|+.+|..++
T Consensus 55 p~~~klfrLaQl~ieYLl~~q~~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E~ 117 (118)
T PF13815_consen 55 PNFLKLFRLAQLSIEYLLHCQEYLSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKES 117 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44556667888888888777 558888999999999999999888888888888888876553
No 217
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=32.78 E-value=3.4e+02 Score=26.53 Aligned_cols=26 Identities=35% Similarity=0.376 Sum_probs=14.5
Q ss_pred hHHhhhhhHHHHHHHHHHHHHhHHHH
Q 009074 156 VDDLQNKNQELMKQIEICQEENKILD 181 (544)
Q Consensus 156 V~dlQN~N~EL~kQiEIcqEEnkiLd 181 (544)
..++++.|..|..++...+..|+-|+
T Consensus 99 ~~~~~~e~~~l~~e~~~l~~~~e~Le 124 (161)
T TIGR02894 99 DQALQKENERLKNQNESLQKRNEELE 124 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556666666555555555554
No 218
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.72 E-value=5.9e+02 Score=26.51 Aligned_cols=142 Identities=19% Similarity=0.243 Sum_probs=83.9
Q ss_pred hhccHHHHHHHHHHHHHhhhchHHHHHHhhhHHHHHHHHHH------------HHHHHHHHhhhhHHhhhhhHHHHHHHH
Q 009074 104 LAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAER------------TVQVALAKASMVDDLQNKNQELMKQIE 171 (544)
Q Consensus 104 iApLeaelk~~r~Ei~kLqddnkaLerltksKEaALleAeR------------~v~~AlakA~~V~dlQN~N~EL~kQiE 171 (544)
|.-++++|+.+..+|..+.++++...-+++..=+|+-.-+- -+-...-|...|-.+=+-+..++.|..
T Consensus 75 i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAmq~nG~~t~Yidvil~SkSfsD~IsRvtAi~~iv~aDk~ile~qk 154 (265)
T COG3883 75 IDQSKAEIKKLQKEIAELKENIVERQELLKKRARAMQVNGTATSYIDVILNSKSFSDLISRVTAISVIVDADKKILEQQK 154 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHccCcHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 55678888888899999888888877777766665543221 123455677777777777777666655
Q ss_pred HHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhc---hhhhhh-hHHHHHHHHHHHHHhhhHHHHHhhhhhhhhhhh
Q 009074 172 ICQEENKILDKMHRQKVAEVEKLTQTVRELEEAVLAG---GAAANA-VRDYQRKVQEMNEERKTLDRELARAKVTANRVA 247 (544)
Q Consensus 172 IcqEEnkiLdk~hRQKvaEVEKLtqTv~ELEEAvLag---gaaaNA-vrdyqrq~~elneEkrtLerELARaKv~AnRVA 247 (544)
.-+.+ |+...-.=.-+.++|-.-..|||.-...= =+-=|+ +--|..+.+.+.+|+.-|.++.|.+...|-.++
T Consensus 155 ~dk~~---Le~kq~~l~~~~e~l~al~~e~e~~~~~L~~qk~e~~~l~~~~aa~~a~~~~e~a~l~~qka~a~a~a~~~a 231 (265)
T COG3883 155 EDKKS---LEEKQAALEDKLETLVALQNELETQLNSLNSQKAEKNALIAALAAKEASALGEKAALEEQKALAEAAAAEAA 231 (265)
T ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 43333 33333333333444444444555443321 122222 344566677788888888877777666555444
Q ss_pred h
Q 009074 248 T 248 (544)
Q Consensus 248 ~ 248 (544)
.
T Consensus 232 ~ 232 (265)
T COG3883 232 K 232 (265)
T ss_pred H
Confidence 3
No 219
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=32.54 E-value=4.1e+02 Score=24.58 Aligned_cols=54 Identities=20% Similarity=0.359 Sum_probs=37.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHHHhhhHHHHHhh
Q 009074 185 RQKVAEVEKLTQTVRELEEAVLAGGAAANAVRDYQRKVQEMNEERKTLDRELAR 238 (544)
Q Consensus 185 RQKvaEVEKLtqTv~ELEEAvLaggaaaNAvrdyqrq~~elneEkrtLerELAR 238 (544)
.+=-.+|+++...+.++...+..+.-..=.+-.++|+++-|.++....+.-|..
T Consensus 45 ~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~~L~e 98 (143)
T PF12718_consen 45 QQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEKKLKE 98 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 333457788888888877777665433333448899999998888877776643
No 220
>PF00901 Orbi_VP5: Orbivirus outer capsid protein VP5; InterPro: IPR000145 The orbivirus VP5 protein is one of the two proteins (with VP2) which make up the virus particle outer capsid. Cryoelectron microscopy indicates that VP5 is a trimer suggesting that there are 360 copies of VP5 per virion [].; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=31.81 E-value=8.1e+02 Score=27.84 Aligned_cols=174 Identities=24% Similarity=0.314 Sum_probs=97.0
Q ss_pred HHHhhhhhhhhhhccccchhccCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhh-hhhhhHHHHhHHHHHHHHHHHHHHh
Q 009074 11 SLFFAMSKITILCSMGADFALNLPVFPKLTEELSKVEEKLKLAENLIETKNLEI-KKINDEKRASMAAQFAAEATLRRVH 89 (544)
Q Consensus 11 ~l~~A~sei~~lkv~~~~e~lKdKaveEl~~El~K~dEKLk~tE~lle~kNLEi-KklndEKK~alAAQfAAEAtLRRvh 89 (544)
|+|-+.+.--.|-|+++-+..-|.- +--=..+.-|++.+|.... +-++ -+.|++ +-.-|+.+ |.-|.
T Consensus 58 syGesvKqAVilNVlG~~d~~pDPL----sPgE~~l~~Kl~eLE~e~k--~d~v~~khn~~----I~~k~g~~--L~~v~ 125 (508)
T PF00901_consen 58 SYGESVKQAVILNVLGTGDEPPDPL----SPGEQGLQRKLKELEDEQK--EDEVREKHNKK----IIEKFGND--LEKVY 125 (508)
T ss_pred chHHHHHHHHHHHhccCCCCCCCCC----CHhHHHHHHHHHHHHHHHh--hHHHHHHHHHH----HHHHHHHH--HHHHH
Confidence 6788888888899999988887763 1111222233333332211 1111 111111 12223332 33332
Q ss_pred hh---ccCC---CCChhHHhhhccHHHHHHHHHHHHHhhhchHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhh
Q 009074 90 AA---QKDD---DMPPIEAILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKN 163 (544)
Q Consensus 90 a~---QKdd---dmppieaiiApLeaelk~~r~Ei~kLqddnkaLerltksKEaALleAeR~v~~AlakA~~V~dlQN~N 163 (544)
.. |... +.--++-+=..|++=.+..+.|...|+.=.+||- | |...|+.-++ .||++.-++.
T Consensus 126 ~~~~~~~~~~~~e~~q~~~LekAl~~~~~i~~~E~~~l~~L~~AL~-----k-------E~~~Rt~dE~-~mv~~yr~ki 192 (508)
T PF00901_consen 126 KFMKGQEKVEEEEENQIEILEKALKSYGKIVKEENKQLDRLARALQ-----K-------ESRERTQDER-KMVEEYRQKI 192 (508)
T ss_pred HHHHHhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----H-------HHHhccHHHH-HHHHHHHHHH
Confidence 22 2111 1223344444555556666666666665555553 2 2334444443 5888999999
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHH--HHHHHHhchhhhhhh
Q 009074 164 QELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRE--LEEAVLAGGAAANAV 215 (544)
Q Consensus 164 ~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLtqTv~E--LEEAvLaggaaaNAv 215 (544)
.-|..-||+.++ -|+=--|-|+--++..|-| -||.=+-|.++||++
T Consensus 193 ~aL~~aIe~Er~------~m~EEAiqe~~dmsaeVlE~AaeEVP~vGag~At~i 240 (508)
T PF00901_consen 193 DALKNAIEVERE------GMQEEAIQEIADMSAEVLEHAAEEVPLVGAGVATGI 240 (508)
T ss_pred HHHHHHHHHHHh------hHHHHHHHHHhcccHHHHHHHhhhCCcccHHHHHHH
Confidence 999999998774 3455667788888888888 566666677777774
No 221
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=31.65 E-value=6e+02 Score=26.24 Aligned_cols=44 Identities=25% Similarity=0.366 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHHHHhhhHHHHHhhhhhhhhh-----hhhhhhhccccCC
Q 009074 215 VRDYQRKVQEMNEERKTLDRELARAKVTANR-----VATVVANEWKDAN 258 (544)
Q Consensus 215 vrdyqrq~~elneEkrtLerELARaKv~AnR-----VA~vVAnEWKDen 258 (544)
...|+.+..++.+|+..|+..+.-+.----| |-..+..=|-|+.
T Consensus 101 ~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~ktNv~n~~F~I~hdG~ 149 (314)
T PF04111_consen 101 YNELQLELIEFQEERDSLKNQYEYASNQLDRLRKTNVYNDTFHIWHDGP 149 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT--TTTTT--EEEETT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhceeeEeecCC
Confidence 4455666666666666666655433332222 2223556677763
No 222
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=31.64 E-value=4.2e+02 Score=24.47 Aligned_cols=120 Identities=21% Similarity=0.339 Sum_probs=72.6
Q ss_pred HHHHhhhchHHHHHHhhhHHHHHHHHHHHHHHHHHH----hhhhHHhhhhhHHHHHHHHHHHHHhHHHHHHhhhHHHHHH
Q 009074 117 EIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAK----ASMVDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVE 192 (544)
Q Consensus 117 Ei~kLqddnkaLerltksKEaALleAeR~v~~Alak----A~~V~dlQN~N~EL~kQiEIcqEEnkiLdk~hRQKvaEVE 192 (544)
....||-+|..|..-+.-+...|.......-..+-- --....+.+.+..+..+|..+++...=+..-..+--.+-.
T Consensus 43 DFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~ 122 (177)
T PF13870_consen 43 DFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERD 122 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566677777777766666666655444333221 1222455566677777777777666665555555556666
Q ss_pred HHHHHHHHHHHHHHhchh-hhhh-hHHHHHHHH---HHHHHhhhHHHHHhhh
Q 009074 193 KLTQTVRELEEAVLAGGA-AANA-VRDYQRKVQ---EMNEERKTLDRELARA 239 (544)
Q Consensus 193 KLtqTv~ELEEAvLagga-aaNA-vrdyqrq~~---elneEkrtLerELARa 239 (544)
++.....+|.. .+|. ..-+ .+||.+... ++..+.++|+|.+..+
T Consensus 123 k~~~~~~~l~~---~~~~~~~P~ll~Dy~~~~~~~~~l~~~i~~l~rk~~~l 171 (177)
T PF13870_consen 123 KLRKQNKKLRQ---QGGLLGVPALLRDYDKTKEEVEELRKEIKELERKVEIL 171 (177)
T ss_pred HHHHHHHHHHH---hcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77776666532 3444 3334 579977664 4667888888877554
No 223
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=31.57 E-value=4.9e+02 Score=25.23 Aligned_cols=52 Identities=19% Similarity=0.257 Sum_probs=38.5
Q ss_pred hhhhhhhhccccchhccCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhH
Q 009074 16 MSKITILCSMGADFALNLPVFPKLTEELSKVEEKLKLAENLIETKNLEIKKINDE 70 (544)
Q Consensus 16 ~sei~~lkv~~~~e~lKdKaveEl~~El~K~dEKLk~tE~lle~kNLEiKklndE 70 (544)
-.+|..|+- .+.-.+|-+.++..|-..+.|-|...+..++...-.++-..-.
T Consensus 33 Keei~emkk---~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kd 84 (201)
T PF13851_consen 33 KEEIAEMKK---KEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKD 84 (201)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555554 8888899999999999999999988888877766555544433
No 224
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=31.49 E-value=5.9e+02 Score=26.15 Aligned_cols=60 Identities=17% Similarity=0.399 Sum_probs=34.0
Q ss_pred hHHHHHHHHHHHHHhhhHHHHHhhhhhhhhhhhhhhhhccccCCCCccchhhHHHHhhhhHHHHHHH
Q 009074 215 VRDYQRKVQEMNEERKTLDRELARAKVTANRVATVVANEWKDANDKVMPVKQWLEERRFLQGEMQQL 281 (544)
Q Consensus 215 vrdyqrq~~elneEkrtLerELARaKv~AnRVA~vVAnEWKDendkVmPVKqWLEErR~LQGEmqrL 281 (544)
+..++.++.+...++..|+.++..+...-+|.-..+ +.-.++ -.+|-+.---+...++.|
T Consensus 251 l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li-~~L~~E------~~RW~~~~~~l~~~~~~l 310 (344)
T PF12777_consen 251 LAALQKEYEEAQKEKQELEEEIEETERKLERAEKLI-SGLSGE------KERWSEQIEELEEQLKNL 310 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCHHH------HHCCHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHH-hhhcch------hhhHHHHHHHHHHHhccc
Confidence 566677777777777777777776666666633332 222222 335665555444444443
No 225
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=31.29 E-value=3.5e+02 Score=24.71 Aligned_cols=57 Identities=33% Similarity=0.386 Sum_probs=39.6
Q ss_pred HHHHHHHhhhchHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHhHHH
Q 009074 114 ARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKIL 180 (544)
Q Consensus 114 ~r~Ei~kLqddnkaLerltksKEaALleAeR~v~~AlakA~~V~dlQN~N~EL~kQiEIcqEEnkiL 180 (544)
.+.-+-.=|-.+..|.--++.||.+|--.+--+ |-|.=+|+-|-|.++..|+|-.+.
T Consensus 17 LKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~----------dSL~FrN~QL~kRV~~LQ~El~~~ 73 (102)
T PF10205_consen 17 LKKAVIEEQAKNAELKEQLKEKEQALRKLEQEN----------DSLTFRNQQLTKRVEVLQEELEES 73 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333445566677888888888887666443 457778888888888888886643
No 226
>PRK09458 pspB phage shock protein B; Provisional
Probab=31.13 E-value=1e+02 Score=26.75 Aligned_cols=36 Identities=25% Similarity=0.292 Sum_probs=28.2
Q ss_pred hhhhHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHHHHHHhhcCCC
Q 009074 271 RRFLQGEMQQLRDRLAITERTAKSEAQLKEKYHLRLKVLEESLRGSS 317 (544)
Q Consensus 271 rR~LQGEmqrLrdKLAiaERtAkaEaQLKeK~~lRLk~LEe~lk~~~ 317 (544)
+.+-++|+|+|.+=...| +|++.|+++||..|-...
T Consensus 34 ~~Ls~~d~~~L~~L~~~A-----------~rm~~RI~tLE~ILDae~ 69 (75)
T PRK09458 34 QGLSQEEQQRLAQLTEKA-----------ERMRERIQALEAILDAEH 69 (75)
T ss_pred CCCCHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHcccC
Confidence 346688999998765544 578999999999998764
No 227
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=31.08 E-value=8.8e+02 Score=28.04 Aligned_cols=18 Identities=28% Similarity=0.497 Sum_probs=8.8
Q ss_pred HHHHHHhhhchHHHHHHh
Q 009074 115 RQEIAKLQDDNKALDRLT 132 (544)
Q Consensus 115 r~Ei~kLqddnkaLerlt 132 (544)
++++..++.....++...
T Consensus 500 ~~e~~~l~~~l~~~~~~~ 517 (908)
T COG0419 500 REEIEELEKELRELEEEL 517 (908)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344445555555554444
No 228
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=30.77 E-value=2.8e+02 Score=26.97 Aligned_cols=110 Identities=21% Similarity=0.195 Sum_probs=70.4
Q ss_pred HHHHHHHHHhhhhhhhhhhccccchhccCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHhHHHHHHHHHH
Q 009074 5 ISNLLCSLFFAMSKITILCSMGADFALNLPVFPKLTEELSKVEEKLKLAENLIETKNLEIKKINDEKRASMAAQFAAEAT 84 (544)
Q Consensus 5 ~~~~~~~l~~A~sei~~lkv~~~~e~lKdKaveEl~~El~K~dEKLk~tE~lle~kNLEiKklndEKK~alAAQfAAEAt 84 (544)
+.|.-..|.|..--+..|-.|... . -..-.--..-|+.-+..+++.|....-+|-.||-.+| ..|..+-.+
T Consensus 106 l~na~a~lehq~~R~~NLeLl~~~---g---~naW~~~n~~Le~~~~~le~~l~~~k~~ie~vN~~RK---~~Q~~~~~~ 176 (221)
T PF05700_consen 106 LDNAYAQLEHQRLRLENLELLSKY---G---ENAWLIHNEQLEAMLKRLEKELAKLKKEIEEVNRERK---RRQEEAGEE 176 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---h---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhHHH
Confidence 456666677766666666553211 1 1122223344455566777778888888888998888 467777777
Q ss_pred HHHHhhhccCC--CCChhHHhhhccHHHHHHHHHHHHHhhh
Q 009074 85 LRRVHAAQKDD--DMPPIEAILAPLEAELKLARQEIAKLQD 123 (544)
Q Consensus 85 LRRvha~QKdd--dmppieaiiApLeaelk~~r~Ei~kLqd 123 (544)
|+-+...-++- ...-|+..+.-||++|+..|++-..+++
T Consensus 177 L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~~~~~ 217 (221)
T PF05700_consen 177 LRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRKAAELKE 217 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 77655443331 2345777888888888888877776665
No 229
>KOG4484 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.72 E-value=3.5e+02 Score=27.16 Aligned_cols=78 Identities=29% Similarity=0.489 Sum_probs=58.6
Q ss_pred HhhhchHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHH---HHhHHHHHHhhhHHHHHHHHHH
Q 009074 120 KLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQ---EENKILDKMHRQKVAEVEKLTQ 196 (544)
Q Consensus 120 kLqddnkaLerltksKEaALleAeR~v~~AlakA~~V~dlQN~N~EL~kQiEIcq---EEnkiLdk~hRQKvaEVEKLtq 196 (544)
.+...+|-++||+|-|. |=++ |+.+++++ .++|++|+++.+ -+.+|..+.|.-+.-|-.|..-
T Consensus 28 ~iK~qiRd~eRlLkk~~---LP~~--Vr~e~er~---------L~~Lk~ql~~~~l~~k~rkif~ryrkVRFFErkKaeR 93 (199)
T KOG4484|consen 28 SIKNQIRDLERLLKKKD---LPPE--VREELERK---------LQDLKKQLDNHELLAKERKIFKRYRKVRFFERKKAER 93 (199)
T ss_pred HHHHHHHHHHHHHhhcc---CCHH--HHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456788899998643 3444 66666654 467777777654 5668889999889999999999
Q ss_pred HHHHHHHHHHhchhh
Q 009074 197 TVRELEEAVLAGGAA 211 (544)
Q Consensus 197 Tv~ELEEAvLaggaa 211 (544)
.|+.||-.+-.+||-
T Consensus 94 ~irrLeK~~keS~ad 108 (199)
T KOG4484|consen 94 SIRRLEKLIKESGAD 108 (199)
T ss_pred HHHHHHHHHHhhccc
Confidence 999999999877764
No 230
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=30.27 E-value=9.6e+02 Score=28.20 Aligned_cols=74 Identities=28% Similarity=0.385 Sum_probs=44.0
Q ss_pred hhHHHHHHHHHHHHHhhhHHHH---HhhhhhhhhhhhhhhhhccccCCCCccchhhHHHHhhhhHHHHHHHHHHHHHhHH
Q 009074 214 AVRDYQRKVQEMNEERKTLDRE---LARAKVTANRVATVVANEWKDANDKVMPVKQWLEERRFLQGEMQQLRDRLAITER 290 (544)
Q Consensus 214 Avrdyqrq~~elneEkrtLerE---LARaKv~AnRVA~vVAnEWKDendkVmPVKqWLEErR~LQGEmqrLrdKLAiaER 290 (544)
|+-|||.+++.|-.|++.-+.. |-.-++.+|- -++-.+++.-.|--.|++|..
T Consensus 462 A~ed~Qeqn~kL~~el~ekdd~nfklm~e~~~~~q-----------------~~k~L~~ek~~l~~~i~~l~~------- 517 (698)
T KOG0978|consen 462 AFEDMQEQNQKLLQELREKDDKNFKLMSERIKANQ-----------------KHKLLREEKSKLEEQILTLKA------- 517 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHH-------
Confidence 5778899988888888765432 1122222221 223334444444444444433
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhcCCCC
Q 009074 291 TAKSEAQLKEKYHLRLKVLEESLRGSSN 318 (544)
Q Consensus 291 tAkaEaQLKeK~~lRLk~LEe~lk~~~s 318 (544)
--++++.+.+-|||-+++.++
T Consensus 518 -------~~~~~~~~i~~leeq~~~lt~ 538 (698)
T KOG0978|consen 518 -------SVDKLELKIGKLEEQERGLTS 538 (698)
T ss_pred -------HHHHHHHHHHHHHHHHHHhhH
Confidence 357889999999999998644
No 231
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=30.21 E-value=5.2e+02 Score=25.14 Aligned_cols=46 Identities=22% Similarity=0.247 Sum_probs=28.2
Q ss_pred hhhHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 009074 161 NKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEAVL 206 (544)
Q Consensus 161 N~N~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLtqTv~ELEEAvL 206 (544)
....+|.+-|...|++...+.....-+..||.+|...+..+.+.+.
T Consensus 131 ~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~ 176 (190)
T PF05266_consen 131 SEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIE 176 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555666666666666666777777777777666653
No 232
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=30.18 E-value=36 Score=29.15 Aligned_cols=42 Identities=24% Similarity=0.340 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhh-hhHHhhhhhHHHHHHHHHHHHH
Q 009074 135 KEAALLEAERTVQVALAKAS-MVDDLQNKNQELMKQIEICQEE 176 (544)
Q Consensus 135 KEaALleAeR~v~~AlakA~-~V~dlQN~N~EL~kQiEIcqEE 176 (544)
+..|..+|+.++..|-..|. |+++-..+...|..+++..+.+
T Consensus 80 ~~~A~~eA~~i~~~A~~~a~~i~~~A~~~~~~l~~~~~~lk~~ 122 (131)
T PF05103_consen 80 KAEAEEEAEEIIEEAQKEAEEIIEEARAEAERLREEIEELKRQ 122 (131)
T ss_dssp -------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556667777777777664 4455555555555555554443
No 233
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=30.15 E-value=1.3e+03 Score=29.55 Aligned_cols=121 Identities=16% Similarity=0.210 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHHhhhchHHHHHHhhhHHHHH-------HHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHhHHH
Q 009074 108 EAELKLARQEIAKLQDDNKALDRLTKSKEAAL-------LEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKIL 180 (544)
Q Consensus 108 eaelk~~r~Ei~kLqddnkaLerltksKEaAL-------leAeR~v~~AlakA~~V~dlQN~N~EL~kQiEIcqEEnkiL 180 (544)
.-+|..--++|..|.++++.--+-+.+=|+-| .-|++....|..-.+--+|++-+-.+...-++..+...-+-
T Consensus 1503 ~l~lp~tpeqi~~L~~~I~e~v~sL~nVd~IL~~T~~di~ra~~L~s~A~~a~~~A~~v~~~ae~V~eaL~~Ad~Aq~~a 1582 (1758)
T KOG0994|consen 1503 ALELPLTPEQIQQLTGEIQERVASLPNVDAILSRTKGDIARAENLQSEAERARSRAEDVKGQAEDVVEALEEADVAQGEA 1582 (1758)
T ss_pred hccCCCCHHHHHHHHHHHHHHHHhcccHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444566666666654444444444333 33444444444433444555555555555555555555555
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHhc-hhhhhh---hHHHHHHHHHHHHH
Q 009074 181 DKMHRQKVAEVEKLTQTVRELEEAVLAG-GAAANA---VRDYQRKVQEMNEE 228 (544)
Q Consensus 181 dk~hRQKvaEVEKLtqTv~ELEEAvLag-gaaaNA---vrdyqrq~~elneE 228 (544)
.+.-++-+.-++-..|++.+.++..-+. +.+.|| +.++...+++|.-+
T Consensus 1583 ~~ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~ 1634 (1758)
T KOG0994|consen 1583 QDAIQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKHK 1634 (1758)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666677777777777777766665554 444454 55666655555443
No 234
>KOG3501 consensus Molecular chaperone Prefoldin, subunit 1 [Posttranslational modification, protein turnover, chaperones]
Probab=30.14 E-value=4.6e+02 Score=24.51 Aligned_cols=94 Identities=21% Similarity=0.240 Sum_probs=57.8
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHhHHHH--HHHHHHHHHHhhhccCCCCChhHHhhhccHHHH
Q 009074 34 PVFPKLTEELSKVEEKLKLAENLIETKNLEIKKINDEKRASMAAQ--FAAEATLRRVHAAQKDDDMPPIEAILAPLEAEL 111 (544)
Q Consensus 34 KaveEl~~El~K~dEKLk~tE~lle~kNLEiKklndEKK~alAAQ--fAAEAtLRRvha~QKdddmppieaiiApLeael 111 (544)
||+-+|....-.-..+++..+-+.+.+|--.|.+..-+|.-+--- -+-=..+-|.. =..|..++..-||+++
T Consensus 3 kaf~~lQ~K~~dtqq~~~~~~vQi~~~nr~kk~~~l~~ke~~~~~de~~~Y~svgrmF------~l~dk~a~~s~leak~ 76 (114)
T KOG3501|consen 3 KAFSQLQEKAVDTQQQLRTIMVQIAAKNRAKKISELAKKELEDVGDEKAVYTSVGRMF------MLSDKAAVRSHLEAKM 76 (114)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH------HcCcHHHHHHHHHHHH
Confidence 556666666666667777777777766655554444444322110 00001111111 1357788999999999
Q ss_pred HHHHHHHHHhhhchHHHHHHhh
Q 009074 112 KLARQEIAKLQDDNKALDRLTK 133 (544)
Q Consensus 112 k~~r~Ei~kLqddnkaLerltk 133 (544)
|..+..|+.||..+--||+-..
T Consensus 77 k~see~IeaLqkkK~YlEk~v~ 98 (114)
T KOG3501|consen 77 KSSEEKIEALQKKKTYLEKTVS 98 (114)
T ss_pred HhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988888876543
No 235
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=30.06 E-value=6.5e+02 Score=26.19 Aligned_cols=24 Identities=21% Similarity=0.426 Sum_probs=13.0
Q ss_pred HHHHHHHHhhhhhhhhhhhhhHHH
Q 009074 49 KLKLAENLIETKNLEIKKINDEKR 72 (544)
Q Consensus 49 KLk~tE~lle~kNLEiKklndEKK 72 (544)
+.+.++++.+...-.+.-+..++.
T Consensus 138 R~kllegLk~~L~~~~~~l~~D~~ 161 (312)
T smart00787 138 RMKLLEGLKEGLDENLEGLKEDYK 161 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556665555555555555555
No 236
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=29.46 E-value=6.5e+02 Score=26.03 Aligned_cols=105 Identities=22% Similarity=0.327 Sum_probs=62.1
Q ss_pred HhhhhHHhhhhhHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHHHhhh
Q 009074 152 KASMVDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEAVLAGGAAANAVRDYQRKVQEMNEERKT 231 (544)
Q Consensus 152 kA~~V~dlQN~N~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLtqTv~ELEEAvLaggaaaNAvrdyqrq~~elneEkrt 231 (544)
||.-+..|.++.+.|+.+-+-. ||.+++---.|..+|+..+.+=.+.|+. .++.++.+-|+.-+-.+..+...
T Consensus 118 K~vqIa~L~rqlq~lk~~qqdE------ldel~e~~~~el~~l~~~~q~k~~~il~-~~~~k~~~~~~~~l~~~~~~N~~ 190 (258)
T PF15397_consen 118 KAVQIANLVRQLQQLKDSQQDE------LDELNEMRQMELASLSRKIQEKKEEILS-SAAEKTQSPMQPALLQRTLENQV 190 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhchHHHHHHHHHHHH
Confidence 4444455555555555543322 2333333334556677777776677764 35667788888777666677777
Q ss_pred HHHHHhhhhhhhhhhhhhhhhccccCCCCccchhhHHHHhhhhHHHHHHHHHH
Q 009074 232 LDRELARAKVTANRVATVVANEWKDANDKVMPVKQWLEERRFLQGEMQQLRDR 284 (544)
Q Consensus 232 LerELARaKv~AnRVA~vVAnEWKDendkVmPVKqWLEErR~LQGEmqrLrdK 284 (544)
+..|+-+-+. -+.+|.++-..|..|+++|+-.
T Consensus 191 m~kei~~~re---------------------~i~el~e~I~~L~~eV~~L~~~ 222 (258)
T PF15397_consen 191 MQKEIVQFRE---------------------EIDELEEEIPQLRAEVEQLQAQ 222 (258)
T ss_pred HHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHh
Confidence 7666633322 2335666666677777777654
No 237
>PF13935 Ead_Ea22: Ead/Ea22-like protein
Probab=29.44 E-value=2.8e+02 Score=25.22 Aligned_cols=39 Identities=23% Similarity=0.317 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhc
Q 009074 165 ELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEAVLAG 208 (544)
Q Consensus 165 EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLtqTv~ELEEAvLag 208 (544)
.|.-.+|.+|...+-++.. .|.+.+..++++|...+.+.
T Consensus 71 ALLDElE~~~~~i~~~~~~-----~e~~~~a~~~~~l~~~Le~a 109 (139)
T PF13935_consen 71 ALLDELERAQQRIAELEQE-----CENEDIALDVQKLRVELEAA 109 (139)
T ss_pred HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH
Confidence 3455566667777766666 77777888888877755543
No 238
>PF02731 SKIP_SNW: SKIP/SNW domain; InterPro: IPR004015 SKIP (SKI-interacting protein) is an essential spliceosomal component and transcriptional coregulator, which may provide regulatory coupling of transcription initiation and splicing []. SKIP was identified in a yeast 2-hybrid screen, where it was shown to interact with both the cellular and viral forms of SKI through the highly conserved region on SKIP known as the SNW domain []. SKIP is now known to interact with a number of other proteins as well. SKIP potentiates the activity of important transcription factors, such as vitamin D receptor, CBF1 (RBP-Jkappa), Smad2/3, and MyoD. It works with Ski in overcoming pRb-mediated cell cycle arrest, and it is targeted by the viral transactivators EBNA2 and E7 []. This entry represents the SNW domain.; GO: 0000398 nuclear mRNA splicing, via spliceosome, 0005681 spliceosomal complex
Probab=29.23 E-value=1.3e+02 Score=29.05 Aligned_cols=60 Identities=23% Similarity=0.453 Sum_probs=46.6
Q ss_pred hccccCCCCccchhhHHH--HhhhhHHHH----HHHHHHHHHhHHhhhHHHHHHHHHHHHHHHHHH
Q 009074 252 NEWKDANDKVMPVKQWLE--ERRFLQGEM----QQLRDRLAITERTAKSEAQLKEKYHLRLKVLEE 311 (544)
Q Consensus 252 nEWKDendkVmPVKqWLE--ErR~LQGEm----qrLrdKLAiaERtAkaEaQLKeK~~lRLk~LEe 311 (544)
.-||+.++-.||+..=|- -|+.-+.+| ..|-+-|-+|||.|.-|-.++..++.++..-|.
T Consensus 75 SNWKN~kGytIpLDKRlaadgr~l~~~~INd~Fa~LseAL~~Ad~~aReev~~R~~~~~~~a~ke~ 140 (158)
T PF02731_consen 75 SNWKNPKGYTIPLDKRLAADGRGLQDVEINDKFAKLSEALYIADRKAREEVRQRAEMQKELAEKEK 140 (158)
T ss_pred ccccCCCCCccCHHHHHhhcccccCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 469999999999988776 444444443 568888899999999999988888887765543
No 239
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=29.11 E-value=5.1e+02 Score=24.61 Aligned_cols=34 Identities=18% Similarity=0.330 Sum_probs=27.0
Q ss_pred hhhhhHHHHHHHHHHHHHhhhHHHHHhhhhhhhh
Q 009074 211 AANAVRDYQRKVQEMNEERKTLDRELARAKVTAN 244 (544)
Q Consensus 211 aaNAvrdyqrq~~elneEkrtLerELARaKv~An 244 (544)
+-.|+.+|++++.+|......|..+|+..-..+.
T Consensus 92 ~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~ 125 (145)
T COG1730 92 ADEAIEFLKKRIEELEKAIEKLQQALAELAQRIE 125 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467899999999999999999998876544443
No 240
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=29.07 E-value=5.5e+02 Score=28.92 Aligned_cols=85 Identities=32% Similarity=0.401 Sum_probs=59.1
Q ss_pred hhhccHHHHHHHHH----HHHHhhhchHHHHHHhhhHHHH----------HHHHHHHHHHHHHHhhhhHHhhhhhHHHHH
Q 009074 103 ILAPLEAELKLARQ----EIAKLQDDNKALDRLTKSKEAA----------LLEAERTVQVALAKASMVDDLQNKNQELMK 168 (544)
Q Consensus 103 iiApLeaelk~~r~----Ei~kLqddnkaLerltksKEaA----------LleAeR~v~~AlakA~~V~dlQN~N~EL~k 168 (544)
.|..|-|||-..|. |-.-|.+.|+.|...++.-=-| |-|||-.+..|-.+|..+ +..|..+.+
T Consensus 386 F~~slaaEiSalr~erEkEr~~l~~eNk~L~~QLrDTAEAVqAagEllvrl~eaeea~~~a~~r~~~~---eqe~ek~~k 462 (488)
T PF06548_consen 386 FINSLAAEISALRAEREKERRFLKDENKGLQIQLRDTAEAVQAAGELLVRLREAEEAASVAQERAMDA---EQENEKAKK 462 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 77888888888876 4455888999998887765433 456666777777777655 457888888
Q ss_pred HHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHH
Q 009074 169 QIEICQEENKILDKMHRQKVAEVEKLTQTVRE 200 (544)
Q Consensus 169 QiEIcqEEnkiLdk~hRQKvaEVEKLtqTv~E 200 (544)
|||- +.|--..||.-+.|-+.|
T Consensus 463 qiek----------LK~kh~~Ei~t~kq~lae 484 (488)
T PF06548_consen 463 QIEK----------LKRKHKMEISTMKQYLAE 484 (488)
T ss_pred HHHH----------HHHHHHHHHHHHHHHHhh
Confidence 8864 445555666666665543
No 241
>KOG2220 consensus Predicted signal transduction protein [General function prediction only]
Probab=28.97 E-value=4.7e+02 Score=30.26 Aligned_cols=128 Identities=17% Similarity=0.254 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHHhh-------hhHHhhhhhHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhchhhh
Q 009074 140 LEAERTVQVALAKAS-------MVDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEAVLAGGAAA 212 (544)
Q Consensus 140 leAeR~v~~AlakA~-------~V~dlQN~N~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLtqTv~ELEEAvLaggaaa 212 (544)
..+.+++|..+.... ...-+++..+.+..=++-..+.+.++.+--+.-..=++=|+-+..+|.-++-..+...
T Consensus 452 a~~~~~lr~~~~~~~~~~~s~~~~~~~~~e~~k~~~~l~~a~~~d~~~~~~~~~~~~~~~ll~~~~~e~~~~lp~~~~~~ 531 (714)
T KOG2220|consen 452 AALDNKLRAKLGQRWTRTRSSELTLALYEELEKLREVLEPAKAADVQLKKAFEAHKKNIRLLSLPPPELQPSLPSLDGPL 531 (714)
T ss_pred HHhhHHHHhhhcccccccccHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHhcchhhhcCCCchhhhhcCCCCCCC
Confidence 344555665555543 2234556666666666666677777766666666666777777777777777655222
Q ss_pred h--------hhHHHHHHHHHHHHHhhhHHHHHhhhhhhhh---hh-hhhhhhcccc------CCCCccchhhHHHH
Q 009074 213 N--------AVRDYQRKVQEMNEERKTLDRELARAKVTAN---RV-ATVVANEWKD------ANDKVMPVKQWLEE 270 (544)
Q Consensus 213 N--------Avrdyqrq~~elneEkrtLerELARaKv~An---RV-A~vVAnEWKD------endkVmPVKqWLEE 270 (544)
| -++.|-.++.+|..++.+|+-+| ++.-+ =. +.+..+..+. ++++.-|++.|+++
T Consensus 532 ~~~~~~~~~~~k~~l~~~~e~k~~r~~L~~~l---~~~i~~ddi~~sl~~~~~~~e~dl~~~~l~k~~~l~~~i~~ 604 (714)
T KOG2220|consen 532 NPNSDEIVRQLKGYLDDLEELKAEREKLEGDL---KVDIFKDDILNSLAIHGGIKEEDLFVSELGKFDPLKWLIHQ 604 (714)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHhhhhhh---HHHHHhcccchhhhhcccccHHHHHHHHhhccchHHHHHHH
Confidence 2 27889999999999999999999 44433 00 1112222332 23343499888865
No 242
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=28.69 E-value=2.4e+02 Score=31.39 Aligned_cols=65 Identities=34% Similarity=0.401 Sum_probs=38.2
Q ss_pred hhhccHHHHHHHHHHHHHhhhchHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHH
Q 009074 103 ILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEE 176 (544)
Q Consensus 103 iiApLeaelk~~r~Ei~kLqddnkaLerltksKEaALleAeR~v~~AlakA~~V~dlQN~N~EL~kQiEIcqEE 176 (544)
-|+-|=+++|..|.+++.|..+|+.|-.-...--.........|+.| |++..++|.++++..+++
T Consensus 60 TlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~a---------v~~~~~~~~~~~~ql~~~ 124 (472)
T TIGR03752 60 TLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQA---------VQSETQELTKEIEQLKSE 124 (472)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH---------HHhhhHHHHHHHHHHHHH
Confidence 46677788999999999999999887532221111111122234443 344556666666665554
No 243
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=28.51 E-value=6.3e+02 Score=25.52 Aligned_cols=101 Identities=22% Similarity=0.359 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHhhhchHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHhHHHHHHhhhH
Q 009074 108 EAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKILDKMHRQK 187 (544)
Q Consensus 108 eaelk~~r~Ei~kLqddnkaLerltksKEaALleAeR~v~~AlakA~~V~dlQN~N~EL~kQiEIcqEEnkiLdk~hRQK 187 (544)
.+|+....-+|.+|++..++|-.-..+=|+.|-+ |..|+-.+++|...++|.+..--+.+-
T Consensus 78 ~eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~--------L~s~Lt~eemQe~i~~L~kev~~~~er----------- 138 (201)
T KOG4603|consen 78 DEELQVLDGKIVALTEKVQSLQQTCSYVEAEIKE--------LSSALTTEEMQEEIQELKKEVAGYRER----------- 138 (201)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHhcChHHHHHHHHHHHHHHHHHHHH-----------
Confidence 4577777778888888888887666665555543 445667788888888876643322211
Q ss_pred HHHHHHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHHHhhhHHHHH
Q 009074 188 VAEVEKLTQTVRELEEAVLAGGAAANAVRDYQRKVQEMNEERKTLDREL 236 (544)
Q Consensus 188 vaEVEKLtqTv~ELEEAvLaggaaaNAvrdyqrq~~elneEkrtLerEL 236 (544)
++++..-+.+. .--.--|+-|.|++.|.+-...++. -||+
T Consensus 139 ---l~~~k~g~~~v-----tpedk~~v~~~y~~~~~~wrk~krm-f~ei 178 (201)
T KOG4603|consen 139 ---LKNIKAGTNHV-----TPEDKEQVYREYQKYCKEWRKRKRM-FREI 178 (201)
T ss_pred ---HHHHHHhcccC-----CHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 11111111110 0023457789999999998887773 3444
No 244
>PF07820 TraC: TraC-like protein; InterPro: IPR012930 The members of this family are sequences that are similar to TraC (Q84HT8 from SWISSPROT) from Rhizobium etli. The gene encoding this protein is one of a group of genes found on plasmid p42a of Rhizobium etli (strain CFN 42/ATCC 51251) that are thought to be involved in the process of plasmid self-transmission. Mobilisation of plasmid p42a is of importance as it is required for transfer of plasmid p42d, the symbiotic plasmid which carries most of the genes required for nodulation and nitrogen fixation by this symbiotic bacterium. The predicted protein products of p42a are similar to known transfer proteins of Agrobacterium tumefaciens plasmid pTiC58 []. ; GO: 0000746 conjugation
Probab=28.39 E-value=2.2e+02 Score=25.68 Aligned_cols=49 Identities=33% Similarity=0.391 Sum_probs=35.4
Q ss_pred HHHHHHHHhhhchHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHH
Q 009074 113 LARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEI 172 (544)
Q Consensus 113 ~~r~Ei~kLqddnkaLerltksKEaALleAeR~v~~AlakA~~V~dlQN~N~EL~kQiEI 172 (544)
..+.||++||+..|.++. -+|||+-+.|+..-+ -+|..-+-||.+-+|.
T Consensus 6 ~I~~eIekLqe~lk~~e~---------keaERigr~AlKaGL--~eieI~d~eL~~~Fee 54 (92)
T PF07820_consen 6 KIREEIEKLQEQLKQAET---------KEAERIGRIALKAGL--GEIEISDAELQAAFEE 54 (92)
T ss_pred HHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHccc--ccccCCHHHHHHHHHH
Confidence 356799999999888775 689999998886443 4555666666655544
No 245
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=28.05 E-value=5.2e+02 Score=24.39 Aligned_cols=49 Identities=27% Similarity=0.398 Sum_probs=24.1
Q ss_pred HHhhhccHHHHHHHHHHHHHhhhchHHHHHHhhhHHHHHHHHHHHHHHH
Q 009074 101 EAILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVA 149 (544)
Q Consensus 101 eaiiApLeaelk~~r~Ei~kLqddnkaLerltksKEaALleAeR~v~~A 149 (544)
+-.|.-++.+|..++..++...-..+-|++-...-+....+-+...+.|
T Consensus 29 ~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~A 77 (221)
T PF04012_consen 29 EQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELA 77 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555555555555555555555554444444444444444433
No 246
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=28.03 E-value=7.6e+02 Score=27.90 Aligned_cols=80 Identities=25% Similarity=0.301 Sum_probs=51.3
Q ss_pred hhhhHHhhhhhHHHHHHHHHHHHH---hHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHHHh
Q 009074 153 ASMVDDLQNKNQELMKQIEICQEE---NKILDKMHRQKVAEVEKLTQTVRELEEAVLAGGAAANAVRDYQRKVQEMNEER 229 (544)
Q Consensus 153 A~~V~dlQN~N~EL~kQiEIcqEE---nkiLdk~hRQKvaEVEKLtqTv~ELEEAvLaggaaaNAvrdyqrq~~elneEk 229 (544)
+-|.++ |-+-|||..-=-+..|+ ..||-|+.|-+-.|+|+|..+++.||+-+-.+-. .+-+....+.+|.+++
T Consensus 259 ~h~LEE-q~reqElraeE~l~Ee~rrhrEil~k~eReasle~Enlqmr~qqleeentelRs---~~arlksl~dklaee~ 334 (502)
T KOG0982|consen 259 YHMLEE-QRREQELRAEESLSEEERRHREILIKKEREASLEKENLQMRDQQLEEENTELRS---LIARLKSLADKLAEED 334 (502)
T ss_pred HHHHHH-HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhhh
Confidence 334444 44555665544344343 3489999999999999999999999987654321 1334556666777776
Q ss_pred hhHHHHH
Q 009074 230 KTLDREL 236 (544)
Q Consensus 230 rtLerEL 236 (544)
..+..+|
T Consensus 335 qr~sd~L 341 (502)
T KOG0982|consen 335 QRSSDLL 341 (502)
T ss_pred hhHHHHH
Confidence 5555444
No 247
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=28.02 E-value=2.5e+02 Score=24.12 Aligned_cols=25 Identities=32% Similarity=0.408 Sum_probs=11.8
Q ss_pred hhhhhHHHHHHHHHHHHHhHHHHHH
Q 009074 159 LQNKNQELMKQIEICQEENKILDKM 183 (544)
Q Consensus 159 lQN~N~EL~kQiEIcqEEnkiLdk~ 183 (544)
|++.+.+|.+|++..+.=+.+|++.
T Consensus 13 LeqeV~~Lq~~L~~E~~~r~aLe~a 37 (88)
T PF14389_consen 13 LEQEVAELQKQLQEEQDLRRALEKA 37 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555444444444443
No 248
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=27.94 E-value=90 Score=25.81 Aligned_cols=34 Identities=35% Similarity=0.352 Sum_probs=25.0
Q ss_pred hHHhhhccHHHHHHHHHHHHHhhhchHHHHHHhh
Q 009074 100 IEAILAPLEAELKLARQEIAKLQDDNKALDRLTK 133 (544)
Q Consensus 100 ieaiiApLeaelk~~r~Ei~kLqddnkaLerltk 133 (544)
|+.-|+-|++||.-.+.+|.+-+-...|-+.|.|
T Consensus 26 L~~RIa~L~aEI~R~~~~~~~K~a~r~AAealFk 59 (59)
T PF06698_consen 26 LEERIALLEAEIARLEAAIAKKSASRAAAEALFK 59 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3457888888888888888877777766666543
No 249
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=27.72 E-value=1.2e+03 Score=28.73 Aligned_cols=104 Identities=25% Similarity=0.385 Sum_probs=72.8
Q ss_pred hhccHHHHHHHHHHHHHhhhchHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHh---HHH
Q 009074 104 LAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEEN---KIL 180 (544)
Q Consensus 104 iApLeaelk~~r~Ei~kLqddnkaLerltksKEaALleAeR~v~~AlakA~~V~dlQN~N~EL~kQiEIcqEEn---kiL 180 (544)
+--+.-|+..-+.|+..|--.+.-|-|-+-.-|+.+.+..-.|..||---.||+-|-.+|.+|...+-...|+- .-|
T Consensus 398 ~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAlGAE~MV~qLtdknlnlEekVklLeetv~dlEal 477 (1243)
T KOG0971|consen 398 HQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAALGAEEMVEQLTDKNLNLEEKVKLLEETVGDLEAL 477 (1243)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHH
Confidence 34466677777888888888888888888888999999999999999999999999999998875544433333 333
Q ss_pred HHHhhh-------HH----HHHHHHHHHHHHHHHHHHh
Q 009074 181 DKMHRQ-------KV----AEVEKLTQTVRELEEAVLA 207 (544)
Q Consensus 181 dk~hRQ-------Kv----aEVEKLtqTv~ELEEAvLa 207 (544)
+.||-| -+ -||+++.--+.||+--|-|
T Consensus 478 ee~~EQL~Esn~ele~DLreEld~~~g~~kel~~r~~a 515 (1243)
T KOG0971|consen 478 EEMNEQLQESNRELELDLREELDMAKGARKELQKRVEA 515 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 333333 22 2455665556666554443
No 250
>PF14916 CCDC92: Coiled-coil domain of unknown function
Probab=27.72 E-value=1.2e+02 Score=25.38 Aligned_cols=39 Identities=36% Similarity=0.539 Sum_probs=31.5
Q ss_pred hhhhhHHHHHHHHHHHHHhH-HHHHHhhhHHHHHHHHHHHHHHH
Q 009074 159 LQNKNQELMKQIEICQEENK-ILDKMHRQKVAEVEKLTQTVREL 201 (544)
Q Consensus 159 lQN~N~EL~kQiEIcqEEnk-iLdk~hRQKvaEVEKLtqTv~EL 201 (544)
|+++++-+.+-|.-.|+|-. +|..+| +||++|.+.-.+|
T Consensus 1 l~~qv~s~e~~i~FLq~eH~~tL~~LH----~EIe~Lq~~~~dL 40 (60)
T PF14916_consen 1 LEQQVQSLEKSILFLQQEHAQTLKGLH----AEIERLQKRNKDL 40 (60)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhcccc
Confidence 56788888899999888875 477776 7999999887775
No 251
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=27.64 E-value=1.2e+03 Score=28.59 Aligned_cols=283 Identities=15% Similarity=0.126 Sum_probs=144.1
Q ss_pred hccCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHhHHHHHHHH---HHHHHHhhhccCCCCChhHHhhhc
Q 009074 30 ALNLPVFPKLTEELSKVEEKLKLAENLIETKNLEIKKINDEKRASMAAQFAAE---ATLRRVHAAQKDDDMPPIEAILAP 106 (544)
Q Consensus 30 ~lKdKaveEl~~El~K~dEKLk~tE~lle~kNLEiKklndEKK~alAAQfAAE---AtLRRvha~QKdddmppieaiiAp 106 (544)
.++.-...+|.+.+......|......+.+-|=.+..+.+.=.-.--+|..|- ..+++...+.+.++-|-=.+...-
T Consensus 98 ~~~~~s~~~Leq~l~~~~~~L~~~q~~l~~~~~~~~~~~~~l~~~pq~~~~~~~~l~~i~~~L~~~~~~~~~l~~a~~~~ 177 (1109)
T PRK10929 98 VPPNMSTDALEQEILQVSSQLLEKSRQAQQEQDRAREISDSLSQLPQQQTEARRQLNEIERRLQTLGTPNTPLAQAQLTA 177 (1109)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhchhhHHHHHHHHHHHHHHHhCCCCCCCcccHHHHHH
Confidence 34555578888888888888888888877766666443332211111111111 223333344455555544445555
Q ss_pred cHHHHHHHHHHHH----------------Hhh------------hchHHHHHHhhhHHHHHHHHHHHHHHHHHHh-----
Q 009074 107 LEAELKLARQEIA----------------KLQ------------DDNKALDRLTKSKEAALLEAERTVQVALAKA----- 153 (544)
Q Consensus 107 Leaelk~~r~Ei~----------------kLq------------ddnkaLerltksKEaALleAeR~v~~AlakA----- 153 (544)
|++|...+..++. .+| .....|...+..| -+.++|.+++.+..-+
T Consensus 178 lqae~~~l~~~~~~l~~~l~s~~~~~~L~~~q~dl~~~~~~~l~~~~~~Lq~~in~k--R~~~se~~~~~~~~~~~~~~~ 255 (1109)
T PRK10929 178 LQAESAALKALVDELELAQLSANNRQELARLRSELAKKRSQQLDAYLQALRNQLNSQ--RQREAERALESTELLAEQSGD 255 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhHHhhcc
Confidence 5555444443332 222 2222222222222 2233444444443211
Q ss_pred --hhhHHhhhhhHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhc-hhhh-----hh----------h
Q 009074 154 --SMVDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEAVLAG-GAAA-----NA----------V 215 (544)
Q Consensus 154 --~~V~dlQN~N~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLtqTv~ELEEAvLag-gaaa-----NA----------v 215 (544)
..+.+....|++|..++...-+....|..-+++--.....++||.+-++|-|... |..+ +. .
T Consensus 256 ~~~~i~~~~~~N~~Ls~~L~~~t~~~n~l~~~~~~~~~~l~~~~q~~~~i~eQi~~l~~S~~Lg~~L~~Q~~~LP~~~~~ 335 (1109)
T PRK10929 256 LPKSIVAQFKINRELSQALNQQAQRMDLIASQQRQAASQTLQVRQALNTLREQSQWLGVSNALGEALRAQVARLPEMPKP 335 (1109)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhCCCCccc
Confidence 1234444678999988888888877777778887888899999999999988663 2221 11 1
Q ss_pred HHHHHHHHHHHHHhhhHHHHHhhhhhhhhhhhhhhhhccccCCCCccc-hhh----HHHHhh-hhHHHHHHHHHHHHHhH
Q 009074 216 RDYQRKVQEMNEERKTLDRELARAKVTANRVATVVANEWKDANDKVMP-VKQ----WLEERR-FLQGEMQQLRDRLAITE 289 (544)
Q Consensus 216 rdyqrq~~elneEkrtLerELARaKv~AnRVA~vVAnEWKDendkVmP-VKq----WLEErR-~LQGEmqrLrdKLAiaE 289 (544)
.+...++..+.=++=.++.++.. .+ .+...... ....+-| +++ -|+.|| +|.-=++.+-.-|..+-
T Consensus 336 ~~l~~~IAdlRl~~f~~~q~~~~--l~--~i~~~~~~----~~~~~t~~~~~~l~~ll~~rr~LL~~L~~~~~~~l~~l~ 407 (1109)
T PRK10929 336 QQLDTEMAQLRVQRLRYEDLLNK--QP--QLRQIRQA----DGQPLTAEQNRILDAQLRTQRELLNSLLSGGDTLILELT 407 (1109)
T ss_pred chhHHHHHHHHHHHHHHHHHHHH--hh--hhHHHHhh----ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11222233222111122211111 00 02222221 1111112 122 233355 45555666777777777
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHhhcCCCCCCCC
Q 009074 290 RTAKSEAQLKEKYHLRLKVLEESLRGSSNGSGR 322 (544)
Q Consensus 290 RtAkaEaQLKeK~~lRLk~LEe~lk~~~s~~~~ 322 (544)
.---+..||.+.+..==.+|.+-|==.+|+.|-
T Consensus 408 ~L~~~q~QL~~~~~~l~~~L~~~lFWv~s~~Pi 440 (1109)
T PRK10929 408 KLKVANSQLEDALKEVNEATHRYLFWVADVSPI 440 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCC
Confidence 777777788777665556666666555555443
No 252
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=27.42 E-value=3.4e+02 Score=30.26 Aligned_cols=105 Identities=22% Similarity=0.321 Sum_probs=68.7
Q ss_pred hhHHhhhccHHHHHHHHHHHHHhhhchHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHhH
Q 009074 99 PIEAILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENK 178 (544)
Q Consensus 99 pieaiiApLeaelk~~r~Ei~kLqddnkaLerltksKEaALleAeR~v~~AlakA~~V~dlQN~N~EL~kQiEIcqEEnk 178 (544)
-++..|+-..-+|...+..|+..+..|+.|+..+.++..-+-+.+ .|..++.|-.+--.
T Consensus 48 ~le~~l~~y~~~L~~~~~di~~IE~qn~~Lqvq~~N~k~L~~eL~---------------------~Ll~~l~i~~~~l~ 106 (701)
T PF09763_consen 48 ELESWLSLYDVELNSVRDDIEYIESQNNGLQVQSANQKLLLNELE---------------------NLLDTLSIPEEHLE 106 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHH---------------------HHHHhcCCCHHHHH
Confidence 367777788888888888999999999999888888877655555 44445555555555
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHh----------chhhhhhhHHHHHHHHH
Q 009074 179 ILDKMHRQKVAEVEKLTQTVRELEEAVLA----------GGAAANAVRDYQRKVQE 224 (544)
Q Consensus 179 iLdk~hRQKvaEVEKLtqTv~ELEEAvLa----------ggaaaNAvrdyqrq~~e 224 (544)
.|..-.=....-|+++...+..|-.|+.+ +..-.-||++++..+..
T Consensus 107 ~L~~~~l~~~~~l~~~e~a~~~L~~Al~~i~~~~~~~~~~~~~M~Av~er~~~~~~ 162 (701)
T PF09763_consen 107 ALRNASLSSPDGLEKIEEAAEALYKALKAIRPDLEKLDPGLGQMRAVKERREEYEK 162 (701)
T ss_pred HHhcCCCCCcccHHHHHHHHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHHHHH
Confidence 55442111222266666667777777777 23356667766555543
No 253
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=27.24 E-value=6.1e+02 Score=24.92 Aligned_cols=30 Identities=23% Similarity=0.092 Sum_probs=18.6
Q ss_pred hHHHHHHHHHHHHHhhhHHHHHhhhhhhhh
Q 009074 215 VRDYQRKVQEMNEERKTLDRELARAKVTAN 244 (544)
Q Consensus 215 vrdyqrq~~elneEkrtLerELARaKv~An 244 (544)
+...+.++..+..........|.+..++|-
T Consensus 181 ~~~~~~~~~~~~~~l~~a~~~l~~~~i~AP 210 (327)
T TIGR02971 181 VDLAQAEVKSALEAVQQAEALLELTYVKAP 210 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCEEECC
Confidence 444455666666666666777776666654
No 254
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=27.23 E-value=79 Score=27.85 Aligned_cols=30 Identities=17% Similarity=0.373 Sum_probs=16.1
Q ss_pred HHhhhhhHHHHHHHHHHHHHhHHHHHHhhh
Q 009074 157 DDLQNKNQELMKQIEICQEENKILDKMHRQ 186 (544)
Q Consensus 157 ~dlQN~N~EL~kQiEIcqEEnkiLdk~hRQ 186 (544)
++++.+|.+|..+|+-.++.-..+++..|.
T Consensus 44 ~~l~~~n~~L~~eI~~L~~~~dyiEe~AR~ 73 (105)
T PRK00888 44 AKLKARNDQLFAEIDDLKGGQEAIEERARN 73 (105)
T ss_pred HHHHHHHHHHHHHHHHhhCcHHHHHHHHHH
Confidence 345555555555555555533455555554
No 255
>PRK10698 phage shock protein PspA; Provisional
Probab=27.17 E-value=6.1e+02 Score=24.91 Aligned_cols=29 Identities=24% Similarity=0.507 Sum_probs=17.3
Q ss_pred HhhhccHHHHHHHHHHHHHhhhchHHHHH
Q 009074 102 AILAPLEAELKLARQEIAKLQDDNKALDR 130 (544)
Q Consensus 102 aiiApLeaelk~~r~Ei~kLqddnkaLer 130 (544)
..++.|+.++......+.+|+++...|+.
T Consensus 99 ~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ 127 (222)
T PRK10698 99 DLIATLEHEVTLVDETLARMKKEIGELEN 127 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666665555543
No 256
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=27.15 E-value=3.7e+02 Score=28.15 Aligned_cols=101 Identities=30% Similarity=0.370 Sum_probs=66.0
Q ss_pred hhhHHHHhHHHHHHHHHHHHHHhhhccCCCCChhHHhhhccHHHHHHHHHHHHHhhhchHHHHHHhhhHHHHHHHHHHHH
Q 009074 67 INDEKRASMAAQFAAEATLRRVHAAQKDDDMPPIEAILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTV 146 (544)
Q Consensus 67 lndEKK~alAAQfAAEAtLRRvha~QKdddmppieaiiApLeaelk~~r~Ei~kLqddnkaLerltksKEaALleAeR~v 146 (544)
+..|=|.|| --|+..||+||.. =.+||--+.|+.. -|+-+.+-||.-+.+.+
T Consensus 108 vrkEl~nAl--vRAGLktL~~v~~-----------------~~d~ke~~ee~ke------kl~E~~~EkeeL~~ele--- 159 (290)
T COG4026 108 VRKELKNAL--VRAGLKTLQRVPE-----------------YMDLKEDYEELKE------KLEELQKEKEELLKELE--- 159 (290)
T ss_pred HHHHHHHHH--HHHHHHHHhccch-----------------hhHHHHHHHHHHH------HHHHHHHHHHHHHHHHH---
Confidence 444555554 4688999999843 1355544444321 14555566665555544
Q ss_pred HHHHHHhhhhHHhhhhhHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 009074 147 QVALAKASMVDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEAVL 206 (544)
Q Consensus 147 ~~AlakA~~V~dlQN~N~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLtqTv~ELEEAvL 206 (544)
++|....++...|+-..-||..|+-|.+.---||.+|.....|||.-+.
T Consensus 160 -----------ele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~~E 208 (290)
T COG4026 160 -----------ELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPGVE 208 (290)
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhccccc
Confidence 3444455555566667788999999988888899999999999987653
No 257
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=27.03 E-value=21 Score=40.96 Aligned_cols=140 Identities=22% Similarity=0.330 Sum_probs=0.0
Q ss_pred hhhccHHHHHHHHHHHHHhhhchHHHHHHhhhHHHHHHHHHHHHHHHHH-Hhhh---hHHhhhhhHHHHHHHHHHHHHhH
Q 009074 103 ILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALA-KASM---VDDLQNKNQELMKQIEICQEENK 178 (544)
Q Consensus 103 iiApLeaelk~~r~Ei~kLqddnkaLerltksKEaALleAeR~v~~Ala-kA~~---V~dlQN~N~EL~kQiEIcqEEnk 178 (544)
.++++|..++....|+.-++.+...++|.-|.=|+-+.++...+..... +.++ .--|+..+..|..++|..+.+.+
T Consensus 603 ~~~~~e~r~~~l~~elee~~~~~~~a~r~rk~aE~el~e~~~~~~~l~~~~~~l~~~kr~le~~i~~l~~eleE~~~~~~ 682 (859)
T PF01576_consen 603 QLAVSERRLRALQAELEELREALEQAERARKQAESELDELQERLNELTSQNSSLSEEKRKLEAEIQQLEEELEEEQSEAE 682 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888888888899999998888888888888888888765544322 2222 34578889999999999999999
Q ss_pred HHHHHhhhHHHHHHHHHH----------------------------HHHHHHHHHHhchhhhhhhHHHHHHHHHHHHHhh
Q 009074 179 ILDKMHRQKVAEVEKLTQ----------------------------TVRELEEAVLAGGAAANAVRDYQRKVQEMNEERK 230 (544)
Q Consensus 179 iLdk~hRQKvaEVEKLtq----------------------------Tv~ELEEAvLaggaaaNAvrdyqrq~~elneEkr 230 (544)
.++.=+|.-++.+..|+. -+.++|.+.+.||-. +|.....+|.+|..+..
T Consensus 683 ~~~ek~kka~~~~~~l~~eL~~Eq~~~~~le~~k~~LE~q~keLq~rl~e~E~~~~~~~k~--~i~kLE~ri~eLE~~Le 760 (859)
T PF01576_consen 683 AAEEKAKKAQAQAAQLAEELRQEQDHNQHLEKEKKALERQVKELQARLEEAEQSALKGGKK--QIAKLEARIRELEEELE 760 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc--HHHHHhHHHHHHHHHHH
Confidence 988877777777666543 344556666665533 56666667777776666
Q ss_pred hHHHHHhhhhhhhh
Q 009074 231 TLDRELARAKVTAN 244 (544)
Q Consensus 231 tLerELARaKv~An 244 (544)
.=.|+=+.+-.+..
T Consensus 761 ~E~r~~~~~~k~~r 774 (859)
T PF01576_consen 761 SEQRRRAEAQKQLR 774 (859)
T ss_dssp --------------
T ss_pred HHHHHHHHHHHHHH
Confidence 55555544443333
No 258
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=26.74 E-value=1.2e+03 Score=28.37 Aligned_cols=201 Identities=22% Similarity=0.232 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHHHHHhhhccCCCCChhHHhhhccHHHHHHHHHHHHHhhhchHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 009074 73 ASMAAQFAAEATLRRVHAAQKDDDMPPIEAILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAK 152 (544)
Q Consensus 73 ~alAAQfAAEAtLRRvha~QKdddmppieaiiApLeaelk~~r~Ei~kLqddnkaLerltksKEaALleAeR~v~~Alak 152 (544)
+-+.+|.......-|--..| ++..+-|||.++.-.+.+..+--++.. .++.-.+-|+-..-..+.|...
T Consensus 343 ~~~~~~l~~~~~ear~~~~q-------~~~ql~~le~~~~e~q~~~qe~~~e~e----qLr~elaql~a~r~q~eka~~~ 411 (980)
T KOG0980|consen 343 AQLKAQLENLKEEARRRIEQ-------YENQLLALEGELQEQQREAQENREEQE----QLRNELAQLLASRTQLEKAQVL 411 (980)
T ss_pred HHHhhhhhhHHHHHHHHHHH-------HHHHHHHHHHHHHHhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhHHhhhhhHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHHHhhhH
Q 009074 153 ASMVDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEAVLAGGAAANAVRDYQRKVQEMNEERKTL 232 (544)
Q Consensus 153 A~~V~dlQN~N~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLtqTv~ELEEAvLaggaaaNAvrdyqrq~~elneEkrtL 232 (544)
|++..|++.-...|++...+-.-=|.-.| ..=..|.-+.+..||-+.++-- .+.+.|.++..-
T Consensus 412 ---~ee~e~~~l~~e~ry~klkek~t~l~~~h---~~lL~K~~di~kQle~~~~s~~-----------~~~~~~~~L~d~ 474 (980)
T KOG0980|consen 412 ---VEEAENKALAAENRYEKLKEKYTELRQEH---ADLLRKYDDIQKQLESAEQSID-----------DVEEENTNLNDQ 474 (980)
T ss_pred ---HHhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhHH-----------HHHHHHHHHHHH
Q ss_pred HHHHhhhhhhhhhhhhhhhhccccCCCCccchhhHHHHhhhhHHHHHHHHHH-HHHhHHhhhHHHHHHHHHHHHHHHHHH
Q 009074 233 DRELARAKVTANRVATVVANEWKDANDKVMPVKQWLEERRFLQGEMQQLRDR-LAITERTAKSEAQLKEKYHLRLKVLEE 311 (544)
Q Consensus 233 erELARaKv~AnRVA~vVAnEWKDendkVmPVKqWLEErR~LQGEmqrLrdK-LAiaERtAkaEaQLKeK~~lRLk~LEe 311 (544)
=.++-|+.-.+|+ .-|-.-. -++..--|-+.+++|+++|+-. -..+++.+.--+||-+.++-+-+.+.+
T Consensus 475 le~~~~~~~~~~~-----K~e~~~~-----~le~l~~El~~l~~e~~~lq~~~~~~~qs~~~~~~~l~~~l~~KD~~~~~ 544 (980)
T KOG0980|consen 475 LEELQRAAGRAET-----KTESQAK-----ALESLRQELALLLIELEELQRTLSNLAQSHNNQLAQLEDLLKQKDRLAAE 544 (980)
T ss_pred HHHHHHHHHHHHH-----hhHHHHH-----HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHH
No 259
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=26.67 E-value=7e+02 Score=25.47 Aligned_cols=95 Identities=23% Similarity=0.229 Sum_probs=54.0
Q ss_pred chhhhHHHHHHHHHHHHHHHHHhhhhhhh----hhhhhhHHHHhHHHHHHHHHHHHHHhhh--ccCCCCChhHHhhhccH
Q 009074 35 VFPKLTEELSKVEEKLKLAENLIETKNLE----IKKINDEKRASMAAQFAAEATLRRVHAA--QKDDDMPPIEAILAPLE 108 (544)
Q Consensus 35 aveEl~~El~K~dEKLk~tE~lle~kNLE----iKklndEKK~alAAQfAAEAtLRRvha~--QKdddmppieaiiApLe 108 (544)
+..||..-+..-..-....|.....-|-. .-...++-|..|-.||..--+.-|.-|- =.+=-+--++.++.-|+
T Consensus 76 ~c~EL~~~I~egr~~~~~~E~~~~~~nPpLf~EY~~a~~d~r~~m~~q~~~vK~~aRl~aK~~WYeWR~~ll~gl~~~L~ 155 (325)
T PF08317_consen 76 SCRELKKYISEGRQIFEEIEEETYESNPPLFREYYTADPDMRLLMDNQFQLVKTYARLEAKKMWYEWRMQLLEGLKEGLE 155 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666555533 3345677778899999887776555331 11112333455555566
Q ss_pred HHHHHHHHHHHHhhhchHHHH
Q 009074 109 AELKLARQEIAKLQDDNKALD 129 (544)
Q Consensus 109 aelk~~r~Ei~kLqddnkaLe 129 (544)
..+...+++-+.|.+....++
T Consensus 156 ~~~~~L~~D~~~L~~~~~~l~ 176 (325)
T PF08317_consen 156 ENLELLQEDYAKLDKQLEQLD 176 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555544444433
No 260
>PRK11281 hypothetical protein; Provisional
Probab=26.42 E-value=1.3e+03 Score=28.40 Aligned_cols=158 Identities=16% Similarity=0.211 Sum_probs=0.0
Q ss_pred HHhhhhHHhhhhhHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhchhhhhh---hHHHHHHHHHHHH
Q 009074 151 AKASMVDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEAVLAGGAAANA---VRDYQRKVQEMNE 227 (544)
Q Consensus 151 akA~~V~dlQN~N~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLtqTv~ELEEAvLaggaaaNA---vrdyqrq~~elne 227 (544)
..+.+++++| +-.++..|++..++++.-|.+--.+--.++....+.+.++-............ +..-+.+..++..
T Consensus 57 ~~k~~~~~l~-~tL~~L~qi~~~~~~~~~L~k~l~~Ap~~l~~a~~~Le~Lk~~~~~~~~~~~~~~Sl~qLEq~L~q~~~ 135 (1113)
T PRK11281 57 EDKLVQQDLE-QTLALLDKIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEETRETLSTLSLRQLESRLAQTLD 135 (1113)
T ss_pred hhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccccccccccccccCHHHHHHHHHHHHH
Q ss_pred HhhhHHHHHhhh----------------hhhhhhhhhh-hhhccccCCCCccchhhHHHH--hhhhHHHHHHHHHHHHHh
Q 009074 228 ERKTLDRELARA----------------KVTANRVATV-VANEWKDANDKVMPVKQWLEE--RRFLQGEMQQLRDRLAIT 288 (544)
Q Consensus 228 EkrtLerELARa----------------Kv~AnRVA~v-VAnEWKDendkVmPVKqWLEE--rR~LQGEmqrLrdKLAia 288 (544)
+...+...|+.+ ..+.|+.-.- .-+.=+.. -|..-+|-+ |-.||.|...|.-++.-.
T Consensus 136 ~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~~L~~~----~~~~~~l~~~~~~~l~ae~~~l~~~~~~~ 211 (1113)
T PRK11281 136 QLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKGG----KVGGKALRPSQRVLLQAEQALLNAQNDLQ 211 (1113)
T ss_pred HHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHhCC----CCCCCcCCHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHhh
Q 009074 289 ERTAKSEAQLKEKYHLRLKVLEESL 313 (544)
Q Consensus 289 ERtAkaEaQLKeK~~lRLk~LEe~l 313 (544)
+.....-.++-|=++.+.+.+...+
T Consensus 212 ~~~l~~~~~l~~l~~~q~d~~~~~~ 236 (1113)
T PRK11281 212 RKSLEGNTQLQDLLQKQRDYLTARI 236 (1113)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHH
No 261
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=26.37 E-value=5.9e+02 Score=24.50 Aligned_cols=86 Identities=27% Similarity=0.348 Sum_probs=0.0
Q ss_pred HHHHHHhhhhHHhhhhhHHHHHHHHHHHHHhHHHHHHhhhH------HHHHHHHHHHHHHHHHHHHhchhhhhhhHHHHH
Q 009074 147 QVALAKASMVDDLQNKNQELMKQIEICQEENKILDKMHRQK------VAEVEKLTQTVRELEEAVLAGGAAANAVRDYQR 220 (544)
Q Consensus 147 ~~AlakA~~V~dlQN~N~EL~kQiEIcqEEnkiLdk~hRQK------vaEVEKLtqTv~ELEEAvLaggaaaNAvrdyqr 220 (544)
+....+-..++.|+..+.++...|+..+++...+..-.-.. +.+++.|.+++.+|..-+. .-...+-
T Consensus 62 ~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~~l~~l~~l~~~~~~l~~el~-~~~~~Dp------ 134 (188)
T PF03962_consen 62 QAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREESEEREELLEELEELKKELKELKKELE-KYSENDP------ 134 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCH------
Q ss_pred HHHHHHHHhhhHHHHHhhhhhhhhh
Q 009074 221 KVQEMNEERKTLDRELARAKVTANR 245 (544)
Q Consensus 221 q~~elneEkrtLerELARaKv~AnR 245 (544)
+....+.+++..++-.|||
T Consensus 135 ------~~i~~~~~~~~~~~~~anr 153 (188)
T PF03962_consen 135 ------EKIEKLKEEIKIAKEAANR 153 (188)
T ss_pred ------HHHHHHHHHHHHHHHHHHH
No 262
>PF03234 CDC37_N: Cdc37 N terminal kinase binding; InterPro: IPR013855 In Saccharomyces cerevisiae (Baker's yeast), cell division control protein Cdc37 is required for the productive formation of Cdc28-cyclin complexes. Cdc37 may be a kinase targeting subunit of Hsp90 [].
Probab=25.84 E-value=6.3e+02 Score=24.63 Aligned_cols=24 Identities=21% Similarity=0.421 Sum_probs=19.7
Q ss_pred hhhccCCCCChhHHhhhccHHHHH
Q 009074 89 HAAQKDDDMPPIEAILAPLEAELK 112 (544)
Q Consensus 89 ha~QKdddmppieaiiApLeaelk 112 (544)
+...++...|+...+|+.|-..|+
T Consensus 98 ~~~~~~~~~p~y~~Mi~~L~~qvk 121 (177)
T PF03234_consen 98 GVENKDPEQPTYDEMIEDLLDQVK 121 (177)
T ss_pred ccccCCCCCCCHHHHHHHHHHHHh
Confidence 345678889999999999988885
No 263
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=25.81 E-value=7.7e+02 Score=25.63 Aligned_cols=32 Identities=16% Similarity=0.094 Sum_probs=15.9
Q ss_pred hHHHHHhhhhhhhhhhhhh-----hhhccccCCCCcc
Q 009074 231 TLDRELARAKVTANRVATV-----VANEWKDANDKVM 262 (544)
Q Consensus 231 tLerELARaKv~AnRVA~v-----VAnEWKDendkVm 262 (544)
.-+..|.+..+.|=-=.+| -.++|=..+..+|
T Consensus 208 ~a~~~L~~t~I~AP~dG~V~~~~v~~G~~V~~g~pl~ 244 (390)
T PRK15136 208 NAWLALQRTKIVSPMTGYVSRRSVQVGAQISPTTPLM 244 (390)
T ss_pred HHHHHHhCCEEECCCCeEEEEEecCCCCEeCCCCeEE
Confidence 3334566666655432222 2356666555555
No 264
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=25.70 E-value=3.4e+02 Score=27.46 Aligned_cols=63 Identities=22% Similarity=0.262 Sum_probs=44.2
Q ss_pred hhhchHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHhHHHHHH
Q 009074 121 LQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKILDKM 183 (544)
Q Consensus 121 LqddnkaLerltksKEaALleAeR~v~~AlakA~~V~dlQN~N~EL~kQiEIcqEEnkiLdk~ 183 (544)
-+.|.+=.+|..|+.+|+-.+-...-+...+.+--|.+|.-.|..|..+++..+.|+..|-.+
T Consensus 189 ~~~~~~y~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~~~~ 251 (269)
T KOG3119|consen 189 EKKDPEYKERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATLRRL 251 (269)
T ss_pred hcCCHHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677778888888888776665555556667777777777777777777776666555443
No 265
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=25.69 E-value=1e+03 Score=27.00 Aligned_cols=94 Identities=27% Similarity=0.243 Sum_probs=51.6
Q ss_pred hhhhhhhHHHHhHHHHHHHHHHHHHHhhhccCCCCChhHHhhhccHHHHHHHHHHHHHhhhchHHHHHHhhhHHHHHHHH
Q 009074 63 EIKKINDEKRASMAAQFAAEATLRRVHAAQKDDDMPPIEAILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEA 142 (544)
Q Consensus 63 EiKklndEKK~alAAQfAAEAtLRRvha~QKdddmppieaiiApLeaelk~~r~Ei~kLqddnkaLerltksKEaALleA 142 (544)
|.+.+..+-.+..++--+.|-+|-.. ..=+.-++.+++--+.+...|..+.-+.--.++-.+--+-++
T Consensus 362 e~~~l~~~~~~~e~~kk~~e~k~~q~------------q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~ 429 (493)
T KOG0804|consen 362 EADSLKQESSDLEAEKKIVERKLQQL------------QTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREKEA 429 (493)
T ss_pred HHHhhhhhhhHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 33333444444555555555553322 223445666666666555556555555443333333322222
Q ss_pred HHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHH
Q 009074 143 ERTVQVALAKASMVDDLQNKNQELMKQIEICQ 174 (544)
Q Consensus 143 eR~v~~AlakA~~V~dlQN~N~EL~kQiEIcq 174 (544)
- -++=.++.|||.|.-+||=+||.-|
T Consensus 430 ~------~s~d~~I~dLqEQlrDlmf~le~qq 455 (493)
T KOG0804|consen 430 L------GSKDEKITDLQEQLRDLMFFLEAQQ 455 (493)
T ss_pred H------HHHHHHHHHHHHHHHhHheehhhhh
Confidence 2 2344678999999999999998654
No 266
>PRK13848 conjugal transfer protein TraC; Provisional
Probab=25.29 E-value=97 Score=28.15 Aligned_cols=30 Identities=47% Similarity=0.543 Sum_probs=23.5
Q ss_pred HHHHHHHhhhchHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 009074 114 ARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAK 152 (544)
Q Consensus 114 ~r~Ei~kLqddnkaLerltksKEaALleAeR~v~~Alak 152 (544)
.+.||++||+..|.++. -+|||+-+.|+.-
T Consensus 8 I~~eI~kLqe~lk~~e~---------keAERigRiAlKA 37 (98)
T PRK13848 8 IREEIAKLQEQLKQAET---------REAERIGRIALKA 37 (98)
T ss_pred HHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHc
Confidence 35789999988776654 6899999988753
No 267
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=25.02 E-value=2.2e+02 Score=28.69 Aligned_cols=69 Identities=22% Similarity=0.223 Sum_probs=40.9
Q ss_pred hhhHHHHHHHHHhhhh------hhhhhhccccchhccCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHhH
Q 009074 2 IDLISNLLCSLFFAMS------KITILCSMGADFALNLPVFPKLTEELSKVEEKLKLAENLIETKNLEIKKINDEKRASM 75 (544)
Q Consensus 2 ~~~~~~~~~~l~~A~s------ei~~lkv~~~~e~lKdKaveEl~~El~K~dEKLk~tE~lle~kNLEiKklndEKK~al 75 (544)
||-+-+++|-|.-.++ +...++- .....-+ +.+|..+..+++...+..++++.-++++...... +|
T Consensus 113 I~R~~~ll~~l~~l~~~~~~~~~~~~lk~---~~~~~~~----~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~-al 184 (216)
T KOG1962|consen 113 IRRLHTLLRELATLRANEKAMKENEALKK---QLENSSK----LEEENDKLKADLEKLETELEKKQKKLEKAQKKVD-AL 184 (216)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHH---hhhcccc----hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 5566677777766555 4444443 2222122 5667777777777777777777777776654433 44
Q ss_pred HHH
Q 009074 76 AAQ 78 (544)
Q Consensus 76 AAQ 78 (544)
-=|
T Consensus 185 ~Kq 187 (216)
T KOG1962|consen 185 KKQ 187 (216)
T ss_pred HHH
Confidence 444
No 268
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=24.55 E-value=1.4e+02 Score=26.19 Aligned_cols=29 Identities=17% Similarity=0.200 Sum_probs=23.4
Q ss_pred hHHhhhhhHHHHHHHHHHHHHhHHHHHHh
Q 009074 156 VDDLQNKNQELMKQIEICQEENKILDKMH 184 (544)
Q Consensus 156 V~dlQN~N~EL~kQiEIcqEEnkiLdk~h 184 (544)
...+++.|.+|.+++...+.||.||.|..
T Consensus 73 ~~~~~~ei~~L~~el~~L~~E~diLKKa~ 101 (121)
T PRK09413 73 LAAAMKQIKELQRLLGKKTMENELLKEAV 101 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567778889999998899999888765
No 269
>PLN02939 transferase, transferring glycosyl groups
Probab=24.44 E-value=1.4e+03 Score=28.02 Aligned_cols=108 Identities=24% Similarity=0.396 Sum_probs=72.1
Q ss_pred hhhhHHHHHHHHHHHH---HhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhchhhhhh-hHHHHHHHHHHHHHhhhHHHH
Q 009074 160 QNKNQELMKQIEICQE---ENKILDKMHRQKVAEVEKLTQTVRELEEAVLAGGAAANA-VRDYQRKVQEMNEERKTLDRE 235 (544)
Q Consensus 160 QN~N~EL~kQiEIcqE---EnkiLdk~hRQKvaEVEKLtqTv~ELEEAvLaggaaaNA-vrdyqrq~~elneEkrtLerE 235 (544)
-.+||+|.++++...+ |-.+. | ..---|+.|+|.|.-|||-+.++-+-.|+ |+-||.-|.+.+.-...|-.|
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (977)
T PLN02939 323 LDQNQDLRDKVDKLEASLKEANVS-K---FSSYKVELLQQKLKLLEERLQASDHEIHSYIQLYQESIKEFQDTLSKLKEE 398 (977)
T ss_pred hccchHHHHHHHHHHHHHHHhhHh-h---hhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3478888888776543 22221 1 12224588889999999999999999999 999999999999888777666
Q ss_pred HhhhhhhhhhhhhhhhhccccCCCCccchhhH----------HHHhhhhHHHHHHHHHHH
Q 009074 236 LARAKVTANRVATVVANEWKDANDKVMPVKQW----------LEERRFLQGEMQQLRDRL 285 (544)
Q Consensus 236 LARaKv~AnRVA~vVAnEWKDendkVmPVKqW----------LEErR~LQGEmqrLrdKL 285 (544)
=.+ ++. .+--|+ ||-.-| +-++-+=++|---||..+
T Consensus 399 ~~~---~~~-------~~~~~~----~~~~~~~~lll~id~~~~~~~~~~~~a~~lr~~~ 444 (977)
T PLN02939 399 SKK---RSL-------EHPADD----MPSEFWSRILLLIDGWLLEKKISNNDAKLLREMV 444 (977)
T ss_pred hhc---ccc-------cCchhh----CCHHHHHHHHHHHHHHHHhccCChhhHHHHHHHH
Confidence 422 111 222233 775544 446666677777777654
No 270
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=24.19 E-value=5.7e+02 Score=23.59 Aligned_cols=163 Identities=21% Similarity=0.258 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHHhhhchHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHhHHHHHHhhhH
Q 009074 108 EAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKILDKMHRQK 187 (544)
Q Consensus 108 eaelk~~r~Ei~kLqddnkaLerltksKEaALleAeR~v~~AlakA~~V~dlQN~N~EL~kQiEIcqEEnkiLdk~hRQK 187 (544)
..+|...|-....++-...-++..++.||-- ...+. ..=.+-||..|+.|..+||.= |.=|-++...-
T Consensus 5 ~~~i~~~Rl~~~~lk~~l~k~~~ql~~ke~l----ge~L~-----~iDFeqLkien~~l~~kIeER---n~eL~~Lk~~~ 72 (177)
T PF13870_consen 5 RNEISKLRLKNITLKHQLAKLEEQLRQKEEL----GEGLH-----LIDFEQLKIENQQLNEKIEER---NKELLKLKKKI 72 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCccc-----HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 3455555666666666666666666665531 11111 112367889999999998854 44455554444
Q ss_pred HHHHHHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHHHhhhHHHHHhhhhhhhhhhhhhhhhccccCCCCccchhh-
Q 009074 188 VAEVEKLTQTVRELEEAVLAGGAAANAVRDYQRKVQEMNEERKTLDRELARAKVTANRVATVVANEWKDANDKVMPVKQ- 266 (544)
Q Consensus 188 vaEVEKLtqTv~ELEEAvLaggaaaNAvrdyqrq~~elneEkrtLerELARaKv~AnRVA~vVAnEWKDendkVmPVKq- 266 (544)
..-|--|++.=..|-.. .+-....+..+....+....+..+|.+++.--++.-.-. ++-+.. ++.+++-.
T Consensus 73 ~~~v~~L~h~keKl~~~-------~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~-~~l~~~-~~~~~~P~l 143 (177)
T PF13870_consen 73 GKTVQILTHVKEKLHFL-------SEELERLKQELKDREEELAKLREELYRVKKERDKLRKQN-KKLRQQ-GGLLGVPAL 143 (177)
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHh-cCCCCCcHH
Confidence 44444444443333322 222333444455555555555566666555544322221 111211 12222222
Q ss_pred ------HHHHhhhhHHHHHHHHHHHHHhHHh
Q 009074 267 ------WLEERRFLQGEMQQLRDRLAITERT 291 (544)
Q Consensus 267 ------WLEErR~LQGEmqrLrdKLAiaERt 291 (544)
-.++.--++.++..|+.++.+++..
T Consensus 144 l~Dy~~~~~~~~~l~~~i~~l~rk~~~l~~~ 174 (177)
T PF13870_consen 144 LRDYDKTKEEVEELRKEIKELERKVEILEMR 174 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2233344566666666666666654
No 271
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=24.10 E-value=1.2e+03 Score=27.10 Aligned_cols=32 Identities=28% Similarity=0.383 Sum_probs=23.8
Q ss_pred hhccCCCCChhHHhhhccHHHHHHHHHHHHHh
Q 009074 90 AAQKDDDMPPIEAILAPLEAELKLARQEIAKL 121 (544)
Q Consensus 90 a~QKdddmppieaiiApLeaelk~~r~Ei~kL 121 (544)
+..+++..-.+++.+++|...|.+|-+|+..-
T Consensus 22 ~~~~~~~~~~~d~~ls~l~~kLql~~qe~~~~ 53 (766)
T PF10191_consen 22 SRSKDEALEKADAHLSSLVMKLQLYSQEVNAS 53 (766)
T ss_pred ccCCCcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555578888999999999998877643
No 272
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=23.99 E-value=6.7e+02 Score=24.29 Aligned_cols=89 Identities=16% Similarity=0.305 Sum_probs=45.8
Q ss_pred hHHHHHHHHHHHHHhhhHHHHHhhhhhhhhhhhhhhhhccccCCCCccchhhHHHHhhhhHHHHHHHHHHHHHhHHhhhH
Q 009074 215 VRDYQRKVQEMNEERKTLDRELARAKVTANRVATVVANEWKDANDKVMPVKQWLEERRFLQGEMQQLRDRLAITERTAKS 294 (544)
Q Consensus 215 vrdyqrq~~elneEkrtLerELARaKv~AnRVA~vVAnEWKDendkVmPVKqWLEErR~LQGEmqrLrdKLAiaERtAka 294 (544)
+-+|..++..++.--..+--.++.++....-+-....+.--+++....|-.+|+ |+.|..-|..++..-+....+
T Consensus 101 l~~~~~~l~~~~~~p~~aq~~l~~~~~~l~ei~~~L~~~~~~~~~~l~~a~~~~-----l~ae~~~l~~~~~~le~el~s 175 (240)
T PF12795_consen 101 LQQENSQLIEIQTRPERAQQQLSEARQRLQEIRNQLQNLPPNGESPLSEAQRWL-----LQAELAALEAQIEMLEQELLS 175 (240)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhccCCCCcchhhHHHHHH-----HHHHHHHHHHHHHHHHHHHHC
Confidence 444444444444433333333333333322222223232222225667888887 677777777777777766666
Q ss_pred HHHHHHHHHHHHHH
Q 009074 295 EAQLKEKYHLRLKV 308 (544)
Q Consensus 295 EaQLKeK~~lRLk~ 308 (544)
-..+-+=|+.|...
T Consensus 176 ~~~rq~L~~~qrdl 189 (240)
T PF12795_consen 176 NNNRQELLQLQRDL 189 (240)
T ss_pred cHHHHHHHHHHHHH
Confidence 66666555555443
No 273
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=23.98 E-value=4.8e+02 Score=22.60 Aligned_cols=96 Identities=16% Similarity=0.234 Sum_probs=52.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHhHHHHHHHHHHHHHHhhhccCCCCChhHHhh------------
Q 009074 37 PKLTEELSKVEEKLKLAENLIETKNLEIKKINDEKRASMAAQFAAEATLRRVHAAQKDDDMPPIEAIL------------ 104 (544)
Q Consensus 37 eEl~~El~K~dEKLk~tE~lle~kNLEiKklndEKK~alAAQfAAEAtLRRvha~QKdddmppieaii------------ 104 (544)
+++...+..+++.+..+...+.+.+..+..+..= ..+|..+......+-+.||-+-+
T Consensus 2 qql~~q~~ql~~~i~~l~~~i~~l~~~i~e~~~~-----------~~~L~~l~~~~~~~~lv~lg~~~~v~~~v~~~~~v 70 (126)
T TIGR00293 2 QQLAAELQILQQQVESLQAQIAALRALIAELETA-----------IETLEDLKGAEGKETLVPVGAGSFVKAKVKDTDKV 70 (126)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHhccccCCCeEEEEcCCCeEEEEEeCCCCEE
Confidence 3455555555555555555555444444444222 35666666553344566775522
Q ss_pred -----------hccHHHHHHHHHHHHHhhhchHHHHHHhhhHHHHHHHHH
Q 009074 105 -----------APLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAE 143 (544)
Q Consensus 105 -----------ApLeaelk~~r~Ei~kLqddnkaLerltksKEaALleAe 143 (544)
-|++.-++.+...+..|.+..+.|..-+..+...+-...
T Consensus 71 ~v~iG~g~~vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~ 120 (126)
T TIGR00293 71 LVSIGSGYYVEKDAEEAIEFLKKRIEELEKAIEKLQEALAELASRAQQLE 120 (126)
T ss_pred EEEcCCCEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666777777777776666666655555554444433
No 274
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=23.96 E-value=7.7e+02 Score=25.02 Aligned_cols=101 Identities=24% Similarity=0.211 Sum_probs=65.1
Q ss_pred CchhhhHHHHHHHHHHHHHHHHH---hhhhhhhhhhhhhHHHHhH-HHHHHHHHHHH-HHhhhccCCCCChhHHhhhccH
Q 009074 34 PVFPKLTEELSKVEEKLKLAENL---IETKNLEIKKINDEKRASM-AAQFAAEATLR-RVHAAQKDDDMPPIEAILAPLE 108 (544)
Q Consensus 34 KaveEl~~El~K~dEKLk~tE~l---le~kNLEiKklndEKK~al-AAQfAAEAtLR-Rvha~QKdddmppieaiiApLe 108 (544)
--+..|.+.|+.-+|+...+|.- .|+|+||=-.+..= || ||--||-...+ =|+.+....--..| .-+
T Consensus 57 ~~~~~L~~~LrEkEErILaLEad~~kWEqkYLEEs~mrq~---a~dAaa~aa~~rdttiI~~s~~~s~~~s~-----r~~ 128 (205)
T PF12240_consen 57 NNASNLKELLREKEERILALEADMTKWEQKYLEESAMRQF---AMDAAATAAAQRDTTIINHSPSESYNSSL-----REE 128 (205)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhhHHHHHHHHHhcCCCCCCCccc-----cch
Confidence 45667899999999999999987 46888876655432 33 22222222222 12222211110111 448
Q ss_pred HHHHHHHHHHHHhhhchHHHHHHhhhHHHHHHHH
Q 009074 109 AELKLARQEIAKLQDDNKALDRLTKSKEAALLEA 142 (544)
Q Consensus 109 aelk~~r~Ei~kLqddnkaLerltksKEaALleA 142 (544)
-+|-.+..-+..++--+|+|+..+.-||+-|--.
T Consensus 129 eel~~a~~K~qemE~RIK~LhaqI~EKDAmIkVL 162 (205)
T PF12240_consen 129 EELHMANRKCQEMENRIKALHAQIAEKDAMIKVL 162 (205)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999888866433
No 275
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=23.95 E-value=1.1e+03 Score=26.78 Aligned_cols=213 Identities=26% Similarity=0.330 Sum_probs=111.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhH----HHHhHHHHHHHH--------HHHHHHhhhccCCCCChh----
Q 009074 37 PKLTEELSKVEEKLKLAENLIETKNLEIKKINDE----KRASMAAQFAAE--------ATLRRVHAAQKDDDMPPI---- 100 (544)
Q Consensus 37 eEl~~El~K~dEKLk~tE~lle~kNLEiKklndE----KK~alAAQfAAE--------AtLRRvha~QKdddmppi---- 100 (544)
++|..-+.-+..+-++....||....--|-+.+| +++...-|.-|| --|..+.+-+|+-+....
T Consensus 46 e~l~~rv~slsq~Nkvlk~elet~k~kcki~qeenr~l~~Asv~IQaraeqeeEfisntLlkkiqal~keketla~~Ye~ 125 (552)
T KOG2129|consen 46 ESLGARVSSLSQRNKVLKGELETLKGKCKIMQEENRPLLLASVEIQARAEQEEEFISNTLLKKIQALFKEKETLATVYEV 125 (552)
T ss_pred HHHHHHHHHHHhhhhhhhhhHHhhhhHHHHHHhcCchhhhhhhHHhhccchHHHHHHHHHHHHHHHhhccccccchhhhh
Confidence 4455555555444455555555444444444443 233333344444 334556666665544321
Q ss_pred --HHhhhccHHHHHHHHHHHHHhhhchHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHhH
Q 009074 101 --EAILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENK 178 (544)
Q Consensus 101 --eaiiApLeaelk~~r~Ei~kLqddnkaLerltksKEaALleAeR~v~~AlakA~~V~dlQN~N~EL~kQiEIcqEEnk 178 (544)
|.+-.||--.++..|||--.|. .+++-++. -..+.||+.|+.. ||+
T Consensus 126 eee~lTn~Lsrkl~qLr~ek~~lE---------------q~leqeqe---------------f~vnKlm~ki~Kl--en~ 173 (552)
T KOG2129|consen 126 EEEFLTNPLSRKLKQLRHEKLPLE---------------QLLEQEQE---------------FFVNKLMNKIRKL--ENK 173 (552)
T ss_pred hhhhccCchhHHHHHHHhhhccHH---------------HHHHHHHH---------------HHHHHHHHHHHHh--hhh
Confidence 2345566666666665543321 12232221 2356677776654 556
Q ss_pred HHHHHh--hhHHHHHHHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHHHhhhHHHHHhhhhhhhhhhhhhhhhcccc
Q 009074 179 ILDKMH--RQKVAEVEKLTQTVRELEEAVLAGGAAANAVRDYQRKVQEMNEERKTLDRELARAKVTANRVATVVANEWKD 256 (544)
Q Consensus 179 iLdk~h--RQKvaEVEKLtqTv~ELEEAvLaggaaaNAvrdyqrq~~elneEkrtLerELARaKv~AnRVA~vVAnEWKD 256 (544)
++-|-+ -|=--|...|-.|+..=+||+ +|-+| .+++.|+.|++.|..-|-. -|++--.---|++---.
T Consensus 174 t~~kq~~leQLRre~V~lentlEQEqEal------vN~Lw---KrmdkLe~ekr~Lq~KlDq-pvs~p~~prdia~~~~~ 243 (552)
T KOG2129|consen 174 TLLKQNTLEQLRREAVQLENTLEQEQEAL------VNSLW---KRMDKLEQEKRYLQKKLDQ-PVSTPSLPRDIAKIPDV 243 (552)
T ss_pred hHHhhhhHHHHHHHHHHHhhHHHHHHHHH------HHHHH---HHHHHHHHHHHHHHHHhcC-cccCCCchhhhhcCccc
Confidence 555544 222223334555555555655 56665 5788899999999887733 22221111112222111
Q ss_pred CCCCccchhhHHHHhhhhHHHHHHHHHHHHHhHHhhhH
Q 009074 257 ANDKVMPVKQWLEERRFLQGEMQQLRDRLAITERTAKS 294 (544)
Q Consensus 257 endkVmPVKqWLEErR~LQGEmqrLrdKLAiaERtAka 294 (544)
.-|..--.+.|. +|||.|+.|||.-|+.|+..+--
T Consensus 244 ~gD~a~~~~~hi---~~l~~EveRlrt~l~~Aqk~~~e 278 (552)
T KOG2129|consen 244 HGDEAAAEKLHI---DKLQAEVERLRTYLSRAQKSYQE 278 (552)
T ss_pred cCchHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 222223344444 78999999999999988876543
No 276
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=23.93 E-value=76 Score=24.63 Aligned_cols=22 Identities=27% Similarity=0.614 Sum_probs=17.4
Q ss_pred HHHHHHHhHHHHHhHHHHHhhh
Q 009074 483 EVEAKKMRREVAAMEKEVAAMR 504 (544)
Q Consensus 483 EVEaKKmrREvaa~EKEvaa~r 504 (544)
-.+.++.+++++.+|+|++..|
T Consensus 47 r~~~~~~~k~l~~le~e~~~lr 68 (68)
T PF06305_consen 47 RRRIRRLRKELKKLEKELEQLR 68 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC
Confidence 4677888888888888887654
No 277
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=23.65 E-value=4.8e+02 Score=22.49 Aligned_cols=37 Identities=19% Similarity=0.222 Sum_probs=23.4
Q ss_pred hhhhHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHH
Q 009074 160 QNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQ 196 (544)
Q Consensus 160 QN~N~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLtq 196 (544)
.++.+++||.++..+.|++.|...+-..--=|++|.+
T Consensus 44 dqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L~~ 80 (96)
T PF08647_consen 44 DQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQLKE 80 (96)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3567777777777777777776655444334444444
No 278
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=23.55 E-value=1.1e+03 Score=26.68 Aligned_cols=28 Identities=14% Similarity=-0.014 Sum_probs=17.7
Q ss_pred HHhHHhhhHHHHHHHHHHHHHHHHHHhh
Q 009074 286 AITERTAKSEAQLKEKYHLRLKVLEESL 313 (544)
Q Consensus 286 AiaERtAkaEaQLKeK~~lRLk~LEe~l 313 (544)
...+|.+....++=+-|-.|.+.++-..
T Consensus 373 ~~L~R~~~~~~~lY~~lL~r~~e~~i~~ 400 (726)
T PRK09841 373 LRLSRDVEAGRAVYLQLLNRQQELSISK 400 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456777777777677666766664443
No 279
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=23.48 E-value=6.4e+02 Score=23.94 Aligned_cols=41 Identities=22% Similarity=0.174 Sum_probs=20.8
Q ss_pred hhHHHH--HHHHHHHHHHhhhhcccccccChhHHHHHHHHhHhh
Q 009074 436 PGVLYD--LLQKEVVALRKAGHEKDQSLKDKDDAIEILAKKVDT 477 (544)
Q Consensus 436 sg~LYD--~LQKEVi~LRKac~eKdqsLkdKddaIeML~KKVdt 477 (544)
.-|.|. +|-+-|.-|+-.+.-.=. +-|-.+-...|..-+.+
T Consensus 255 ~~f~~~v~lLn~nI~~L~~~q~~~~~-~l~~~~~l~nl~~~l~~ 297 (302)
T PF10186_consen 255 QRFEYAVFLLNKNIAQLCFSQGIDVP-LLDPRDTLGNLLNLLWS 297 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCC-cCCchhhHHHHHHHHhh
Confidence 344443 678888888874433322 33334444444444433
No 280
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=23.15 E-value=7.2e+02 Score=24.36 Aligned_cols=21 Identities=14% Similarity=0.295 Sum_probs=10.9
Q ss_pred chhhhHHHHHHHHHHHHHHHH
Q 009074 35 VFPKLTEELSKVEEKLKLAEN 55 (544)
Q Consensus 35 aveEl~~El~K~dEKLk~tE~ 55 (544)
.+..|..++.-+.+|...+-.
T Consensus 53 ~l~~L~~d~~~L~~k~~~~~~ 73 (264)
T PF06008_consen 53 ELESLEQDVENLQEKATKVSR 73 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555555544433
No 281
>PF15112 DUF4559: Domain of unknown function (DUF4559)
Probab=22.74 E-value=2.7e+02 Score=29.58 Aligned_cols=98 Identities=29% Similarity=0.451 Sum_probs=63.0
Q ss_pred hhhHHHHHHHHHHHHH-hhhHHHHHhhhhhhhhhhhhhhhhccc------cCCCC-ccchhhHHHHhhhhHHHHHHHHHH
Q 009074 213 NAVRDYQRKVQEMNEE-RKTLDRELARAKVTANRVATVVANEWK------DANDK-VMPVKQWLEERRFLQGEMQQLRDR 284 (544)
Q Consensus 213 NAvrdyqrq~~elneE-krtLerELARaKv~AnRVA~vVAnEWK------Dendk-VmPVKqWLEErR~LQGEmqrLrdK 284 (544)
..+++|+.+++-|-.+ +.+.+ +....-++=-+-..+|+ |.-|+ -+-.+-.+++.-+++=||+-|+|+
T Consensus 163 ~wm~~~~~~i~nll~~f~~ipe-----~~~a~~~Ie~ll~~d~~v~~~~~d~~Dg~~~~~~~~~~~~~i~e~e~e~Lke~ 237 (307)
T PF15112_consen 163 QWMRDFQMKIQNLLNEFRNIPE-----IVAAGSRIEQLLTSDWAVHIPEEDQRDGCESETDVYLSESQILEIEMELLKEK 237 (307)
T ss_pred HHHHHHHHHHHHHHHHhccChH-----HHHHHHHHHHHHhhhhhhcCchhhccchhhhccchhhhHHHHHHHHHHHHHHH
Confidence 3489999999887663 22222 22333333333334444 33344 234566789999999999999999
Q ss_pred HHHhHHhhhHHHHHHHHHHHHHHHHHHhhcC
Q 009074 285 LAITERTAKSEAQLKEKYHLRLKVLEESLRG 315 (544)
Q Consensus 285 LAiaERtAkaEaQLKeK~~lRLk~LEe~lk~ 315 (544)
|.-.=+++.-..-+.+..-.+|+++=+-|++
T Consensus 238 lqel~~~~e~~~~~~ee~~~~l~~~~~fL~~ 268 (307)
T PF15112_consen 238 LQELYLQAEEQEVLPEEDSKRLEVLKEFLRN 268 (307)
T ss_pred HHHHHHHHhhccccchhhhHHHHHHHHHHHh
Confidence 9887666666665666666677777766665
No 282
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=22.64 E-value=1.3e+03 Score=27.34 Aligned_cols=204 Identities=12% Similarity=0.086 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhhhhh----------------------------hhhhhh---HHHHhHHHHHHHHHH
Q 009074 36 FPKLTEELSKVEEKLKLAENLIETKNLE----------------------------IKKIND---EKRASMAAQFAAEAT 84 (544)
Q Consensus 36 veEl~~El~K~dEKLk~tE~lle~kNLE----------------------------iKklnd---EKK~alAAQfAAEAt 84 (544)
+.++..++..+..++..++..+....-. +..+.. .....-......+..
T Consensus 618 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 697 (1047)
T PRK10246 618 RHELQGQIAAHNQQIIQYQQQIEQRQQQLLTALAGYALTLPQEDEEASWLATRQQEAQSWQQRQNELTALQNRIQQLTPL 697 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhhhccCCCCChhHHhhhccHHHHHHHHHHHHHhhhchHHHHHHhhhHHHHHHHHHHHHHHHHHHhhh---------
Q 009074 85 LRRVHAAQKDDDMPPIEAILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASM--------- 155 (544)
Q Consensus 85 LRRvha~QKdddmppieaiiApLeaelk~~r~Ei~kLqddnkaLerltksKEaALleAeR~v~~AlakA~~--------- 155 (544)
+..+-..++ -+.....-.+..+..++.++..++-...++..-+..-...+..+...+..+|+....
T Consensus 698 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~f~~~~~~~~~ 772 (1047)
T PRK10246 698 LETLPQSDD-----LPHSEETVALDNWRQVHEQCLSLHSQLQTLQQQDVLEAQRLQKAQAQFDTALQASVFDDQQAFLAA 772 (1047)
T ss_pred HHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Q ss_pred ------hHHhhhhhHHHHHHHHHHHHHhHHHHHHhhh----H-------------HHHHHHHHHHHHHHHHHHHhchhhh
Q 009074 156 ------VDDLQNKNQELMKQIEICQEENKILDKMHRQ----K-------------VAEVEKLTQTVRELEEAVLAGGAAA 212 (544)
Q Consensus 156 ------V~dlQN~N~EL~kQiEIcqEEnkiLdk~hRQ----K-------------vaEVEKLtqTv~ELEEAvLaggaaa 212 (544)
++.++.....+..++..++..-.-+.+..-. + ...+..+.+.+.++...+-.-....
T Consensus 773 ~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 852 (1047)
T PRK10246 773 LLDEETLTQLEQLKQNLENQRQQAQTLVTQTAQALAQHQQHRPDGLDLTVTVEQIQQELAQLAQQLRENTTRQGEIRQQL 852 (1047)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhHHHHHHHHHHHHHhhhHHHHHhhhhhhhh
Q 009074 213 NAVRDYQRKVQEMNEERKTLDRELARAKVTAN 244 (544)
Q Consensus 213 NAvrdyqrq~~elneEkrtLerELARaKv~An 244 (544)
+....-..++.++.++...+..+..+....+.
T Consensus 853 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 884 (1047)
T PRK10246 853 KQDADNRQQQQALMQQIAQATQQVEDWGYLNS 884 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 283
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=22.53 E-value=6e+02 Score=23.27 Aligned_cols=28 Identities=36% Similarity=0.386 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHhhhchHHHHHHhhhHHH
Q 009074 110 ELKLARQEIAKLQDDNKALDRLTKSKEA 137 (544)
Q Consensus 110 elk~~r~Ei~kLqddnkaLerltksKEa 137 (544)
++.....+|..|++....|..-.+.-++
T Consensus 73 el~~ld~ei~~L~~el~~l~~~~k~l~~ 100 (169)
T PF07106_consen 73 ELAELDAEIKELREELAELKKEVKSLEA 100 (169)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555554444444444333
No 284
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=22.52 E-value=2.5e+02 Score=25.94 Aligned_cols=43 Identities=16% Similarity=0.235 Sum_probs=33.3
Q ss_pred chhhHHHHhhhhHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHHHHHH
Q 009074 263 PVKQWLEERRFLQGEMQQLRDRLAITERTAKSEAQLKEKYHLRLKVLEE 311 (544)
Q Consensus 263 PVKqWLEErR~LQGEmqrLrdKLAiaERtAkaEaQLKeK~~lRLk~LEe 311 (544)
||...|++|+ +...+.+.-||....--.++.+.|+.+|...+.
T Consensus 42 pi~~~l~~R~------~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~a~~ 84 (175)
T PRK14472 42 PILSALEERE------KGIQSSIDRAHSAKDEAEAILRKNRELLAKADA 84 (175)
T ss_pred HHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999998 566777777777777777778888887766553
No 285
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=22.20 E-value=4.1e+02 Score=25.03 Aligned_cols=51 Identities=18% Similarity=0.167 Sum_probs=23.5
Q ss_pred hhhHHHHHHHHHhhhhhhhhhhccccchhccCCchhhhHHHHHHHHHHHHHHHH
Q 009074 2 IDLISNLLCSLFFAMSKITILCSMGADFALNLPVFPKLTEELSKVEEKLKLAEN 55 (544)
Q Consensus 2 ~~~~~~~~~~l~~A~sei~~lkv~~~~e~lKdKaveEl~~El~K~dEKLk~tE~ 55 (544)
|=++.-+++.+|+-.-+...|.- +.....+.+......+...+.-|..+..
T Consensus 4 i~l~~~a~~~~~~~~~~~~~l~~---~~~~a~~~~~~~~~~l~~~~~qL~~l~~ 54 (135)
T TIGR03495 4 IVLLGLLVAGLGWQSQRLRNARA---DLERANRVLKAQQAELASKANQLIVLLA 54 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 33444555666666656555443 4443334444444444444443333333
No 286
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=22.19 E-value=3.9e+02 Score=32.15 Aligned_cols=202 Identities=21% Similarity=0.202 Sum_probs=0.0
Q ss_pred hHHhhhccHHHHHHHH-----HHHHHhhhchHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHH
Q 009074 100 IEAILAPLEAELKLAR-----QEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQ 174 (544)
Q Consensus 100 ieaiiApLeaelk~~r-----~Ei~kLqddnkaLerltksKEaALleAeR~v~~AlakA~~V~dlQN~N~EL~kQiEIcq 174 (544)
+-+.|.||+.+|-.++ +||..|...|+.|+.-.....-.+.+---++-+-..++....-.-++++..-.-.-..-
T Consensus 335 lK~ql~~l~~ell~~~~~~~~~ei~sl~~e~~~l~~~~d~~~~e~~e~~s~~s~~~~~~~~~~~~k~k~~~~~~~~~~~~ 414 (913)
T KOG0244|consen 335 LKAQLEPLQVELLSKAGDELDAEINSLPFENVTLEETLDALLQEKGEERSTLSSKSLKLTGAEKEKDKLRRRTDSCMNLL 414 (913)
T ss_pred HHHHHHHHHHHHHhhccccchhHHhhhhhhhhhhhhhHHHHhcchhhhhhhhhHHHHhcchhhhhHHHHHHHHHHHHHHH
Q ss_pred HHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhchhhhh-------------hhHHHHHHHHHHHHHhhhHHHHHhhhhh
Q 009074 175 EENKILDKMHRQKVAEVEKLTQTVRELEEAVLAGGAAAN-------------AVRDYQRKVQEMNEERKTLDRELARAKV 241 (544)
Q Consensus 175 EEnkiLdk~hRQKvaEVEKLtqTv~ELEEAvLaggaaaN-------------Avrdyqrq~~elneEkrtLerELARaKv 241 (544)
++...++-.+-- .-|..++.+++.-..-.|...+ .+-.-+.|-+ |.-|.+.++..|+-=--
T Consensus 415 ~~~~~~~~~~~~-----~~L~~~~~~v~~~~~e~~~~~~~~~~e~~~~~~~~~~~~~~~q~~-ls~el~el~k~l~~Ke~ 488 (913)
T KOG0244|consen 415 SEDSNEDASDKS-----ASLPKPLEPVDSGTEEIGMNTDTSGDEAAEKELSETIGHPQKQGS-LSGELSELEKRLAEKEP 488 (913)
T ss_pred HHhHhHHhhhcc-----ccCCccccccccccccccccccCCCchhhhcccccCccchHHHhh-hhHHHHHHHhhhccccH
Q ss_pred hhhhhhhhhhhccccCCCCccchhhHHHHhhhhHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHHHHH
Q 009074 242 TANRVATVVANEWKDANDKVMPVKQWLEERRFLQGEMQQLRDRLAITERTAKSEAQLKEKYHLRLKVLE 310 (544)
Q Consensus 242 ~AnRVA~vVAnEWKDendkVmPVKqWLEErR~LQGEmqrLrdKLAiaERtAkaEaQLKeK~~lRLk~LE 310 (544)
.+-|.+---++--+--.+.=.-...-..|-+=+|-|+.+|+..|...-+ --+-|++-+..+|+.||
T Consensus 489 l~rr~~~~~~~~~~~~~~~e~~~~~le~e~~~le~E~~~l~~el~~~~~---~~~kl~eer~qklk~le 554 (913)
T KOG0244|consen 489 LTRRKAYEKAEKSKAKEQYESDSGTLEAEKSPLESERSRLRNELNVFNR---LAAKLGEERVQKLKSLE 554 (913)
T ss_pred HHHHHHHhhhhhhHHHHHHhhhhhhHHHHhcccccccHHHHHHHHhhhH---HHHHhhhHHHHHHHHHH
No 287
>KOG4368 consensus Predicted RNA binding protein, contains SWAP, RPR and G-patch domains [General function prediction only]
Probab=22.09 E-value=3.1e+02 Score=31.84 Aligned_cols=32 Identities=34% Similarity=0.399 Sum_probs=18.8
Q ss_pred cCCCCCCCcchhhhhhhccCCccccCCCCccc
Q 009074 357 KRTPSSRSLSSSTVLKHAKGTSKSFDGGTRSL 388 (544)
Q Consensus 357 kr~~~sq~r~s~~~l~~a~~~s~sfdgg~rs~ 388 (544)
++++.+.+|+++.-.+.-..-|+|.+.|-+..
T Consensus 633 RsrS~s~S~SsSrSrs~SRsrS~srs~G~~~~ 664 (757)
T KOG4368|consen 633 RSRSRSRSRSSSRSRSQSRSRSKSYSPGRRRR 664 (757)
T ss_pred ccccCCCCCCccccccCCcccccccCCCCCCc
Confidence 33455556656555556666677777775533
No 288
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=21.44 E-value=1.9e+02 Score=24.88 Aligned_cols=58 Identities=22% Similarity=0.444 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHhhhhcccccccChhHHHHHHHHhHhhhhhHHHHHHHHHhHHHHHhHHHHHhhh
Q 009074 440 YDLLQKEVVALRKAGHEKDQSLKDKDDAIEILAKKVDTLTKAMEVEAKKMRREVAAMEKEVAAMR 504 (544)
Q Consensus 440 YD~LQKEVi~LRKac~eKdqsLkdKddaIeML~KKVdtLtKAmEVEaKKmrREvaa~EKEvaa~r 504 (544)
||.+..|.-+++..+.+=+..+..--.+|.|+-.+|-.|-.+ -.|||-. -|.|++.+|
T Consensus 13 f~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~----h~kmK~~---YEeEI~rLr 70 (79)
T PF08581_consen 13 FENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQA----HRKMKQQ---YEEEIARLR 70 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH---HHHHHHHHH
Confidence 677777887788788888888999999999999999887554 3445432 255555444
No 289
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=21.41 E-value=2.7e+02 Score=25.67 Aligned_cols=42 Identities=12% Similarity=0.120 Sum_probs=33.5
Q ss_pred chhhHHHHhhhhHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHHHHH
Q 009074 263 PVKQWLEERRFLQGEMQQLRDRLAITERTAKSEAQLKEKYHLRLKVLE 310 (544)
Q Consensus 263 PVKqWLEErR~LQGEmqrLrdKLAiaERtAkaEaQLKeK~~lRLk~LE 310 (544)
||...|++|+ +...+-|.-||+.-.--.+++..|+.+|....
T Consensus 34 pi~~~le~R~------~~I~~~l~~Ae~~k~eAe~~~~~~e~~L~~A~ 75 (167)
T PRK14475 34 ALAGALDAYA------AKIQAELDEAQRLREEAQALLADVKAEREEAE 75 (167)
T ss_pred HHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999998 56667777888888777888888888876543
No 290
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=21.39 E-value=8.6e+02 Score=24.63 Aligned_cols=26 Identities=19% Similarity=0.286 Sum_probs=16.3
Q ss_pred hHHhhhhhHHHHHHHHHHHHHhHHHH
Q 009074 156 VDDLQNKNQELMKQIEICQEENKILD 181 (544)
Q Consensus 156 V~dlQN~N~EL~kQiEIcqEEnkiLd 181 (544)
++.++++..+...++..++++|.+++
T Consensus 179 l~~~~~~l~~ae~~l~~fr~~~~~~d 204 (362)
T TIGR01010 179 VKEAEQRLNATKAELLKYQIKNKVFD 204 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcC
Confidence 34555566666666666777776665
No 291
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=21.36 E-value=9.8e+02 Score=25.25 Aligned_cols=28 Identities=18% Similarity=0.165 Sum_probs=12.8
Q ss_pred ccHHHHHHHHHHHHHhhhchHHHHHHhh
Q 009074 106 PLEAELKLARQEIAKLQDDNKALDRLTK 133 (544)
Q Consensus 106 pLeaelk~~r~Ei~kLqddnkaLerltk 133 (544)
-+++++....+.|..++.....+..+.+
T Consensus 169 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 196 (457)
T TIGR01000 169 AAEKTKAQLDQQISKTDQKLQDYQALKN 196 (457)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444
No 292
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=21.11 E-value=5.9e+02 Score=23.90 Aligned_cols=41 Identities=17% Similarity=0.196 Sum_probs=22.5
Q ss_pred cHHHHHHHHHHHHHhhhchHHHHHHhhhHHHHHHHHHHHHH
Q 009074 107 LEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQ 147 (544)
Q Consensus 107 Leaelk~~r~Ei~kLqddnkaLerltksKEaALleAeR~v~ 147 (544)
|.+++...+..|....---+-|+.-++.|++.+......+.
T Consensus 78 l~a~~~e~qsli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~ 118 (131)
T PF04859_consen 78 LAAEIQEQQSLIKTYEIVVKKLEAELRAKDSEIDRLREKLD 118 (131)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444445566667777777766554443
No 293
>PRK00295 hypothetical protein; Provisional
Probab=20.91 E-value=4.2e+02 Score=21.87 Aligned_cols=29 Identities=14% Similarity=0.270 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhhh
Q 009074 40 TEELSKVEEKLKLAENLIETKNLEIKKIN 68 (544)
Q Consensus 40 ~~El~K~dEKLk~tE~lle~kNLEiKkln 68 (544)
.+-+..|+.|+.+.|..++..|-.|-+-.
T Consensus 4 e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq 32 (68)
T PRK00295 4 EERVTELESRQAFQDDTIQALNDVLVEQQ 32 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44577788888888888888776665544
No 294
>PRK02119 hypothetical protein; Provisional
Probab=20.88 E-value=4e+02 Score=22.33 Aligned_cols=32 Identities=25% Similarity=0.420 Sum_probs=25.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhh
Q 009074 37 PKLTEELSKVEEKLKLAENLIETKNLEIKKIN 68 (544)
Q Consensus 37 eEl~~El~K~dEKLk~tE~lle~kNLEiKkln 68 (544)
..+.+-+..|+.|+...|..++..|--|-+-.
T Consensus 5 ~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq 36 (73)
T PRK02119 5 QNLENRIAELEMKIAFQENLLEELNQALIEQQ 36 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888899999999999998887766554
No 295
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=20.83 E-value=1e+03 Score=25.14 Aligned_cols=22 Identities=36% Similarity=0.299 Sum_probs=10.5
Q ss_pred HHHHHhhhhHHhhhhhHHHHHH
Q 009074 148 VALAKASMVDDLQNKNQELMKQ 169 (544)
Q Consensus 148 ~AlakA~~V~dlQN~N~EL~kQ 169 (544)
.+-+...+.+.+-++-+++.-|
T Consensus 381 e~~~~r~~ye~lL~r~qe~~~~ 402 (458)
T COG3206 381 EAEAARSLYETLLQRYQELSIQ 402 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3334445555555555554443
No 296
>COG0233 Frr Ribosome recycling factor [Translation, ribosomal structure and biogenesis]
Probab=20.55 E-value=1.4e+02 Score=29.63 Aligned_cols=45 Identities=40% Similarity=0.623 Sum_probs=36.9
Q ss_pred HhhhccCCCCChhHHhhhccHHHHHHHHHHHHHhhhc-hHHHHHHhhhHHHHHHH
Q 009074 88 VHAAQKDDDMPPIEAILAPLEAELKLARQEIAKLQDD-NKALDRLTKSKEAALLE 141 (544)
Q Consensus 88 vha~QKdddmppieaiiApLeaelk~~r~Ei~kLqdd-nkaLerltksKEaALle 141 (544)
+....||.+.. |-|.+.+..+|++|.|+ .+-+|.+++.||..|.+
T Consensus 141 iKK~~K~~~is---------EDe~k~~e~~iQKlTd~yi~~iD~~~~~KEkEim~ 186 (187)
T COG0233 141 IKKLEKDKEIS---------EDEVKKAEEEIQKLTDEYIKKIDELLKDKEKEIME 186 (187)
T ss_pred HHHHhccCCcc---------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 55666766532 78899999999999987 67899999999998864
No 297
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=20.53 E-value=3.5e+02 Score=22.37 Aligned_cols=39 Identities=28% Similarity=0.556 Sum_probs=0.0
Q ss_pred hHHhhhhhHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHH
Q 009074 156 VDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVREL 201 (544)
Q Consensus 156 V~dlQN~N~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLtqTv~EL 201 (544)
++||+|+...+.-.|...+.||.=|.+ +|+++.++|+.|
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~i~~-------~ve~i~envk~l 40 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEEISE-------SVEKIEENVKDL 40 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
No 298
>PRK10807 paraquat-inducible protein B; Provisional
Probab=20.45 E-value=6.2e+02 Score=28.15 Aligned_cols=30 Identities=13% Similarity=0.320 Sum_probs=13.9
Q ss_pred hHHhhhccHHHHHHHHHHHHHhhhchHHHH
Q 009074 100 IEAILAPLEAELKLARQEIAKLQDDNKALD 129 (544)
Q Consensus 100 ieaiiApLeaelk~~r~Ei~kLqddnkaLe 129 (544)
|+.|++-|++-|+..++-...+...-..++
T Consensus 434 le~i~~~l~~tL~~~~~tl~~l~~~l~~l~ 463 (547)
T PRK10807 434 LNPMIEQATSTLSESQRTMRELQTTLDSLN 463 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555544444443333333333
No 299
>KOG2150 consensus CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=20.34 E-value=1.4e+03 Score=26.53 Aligned_cols=48 Identities=35% Similarity=0.475 Sum_probs=26.3
Q ss_pred ccHHHHHHHHHHHHHhh---hchHHHHH--HhhhHHHHHHHHHHHHHHHHHHhhhhH
Q 009074 106 PLEAELKLARQEIAKLQ---DDNKALDR--LTKSKEAALLEAERTVQVALAKASMVD 157 (544)
Q Consensus 106 pLeaelk~~r~Ei~kLq---ddnkaLer--ltksKEaALleAeR~v~~AlakA~~V~ 157 (544)
-||+|||. ||-||| |.+|..-. =+|-| ..|++..|-|+..+++=-.|+
T Consensus 42 K~e~DLKk---EIKKLQRlRdQIKtW~ss~dIKDK-~~L~d~RrlIE~~MErfK~vE 94 (575)
T KOG2150|consen 42 KLESDLKK---EIKKLQRLRDQIKTWQSSSDIKDK-DSLLDNRRLIEQRMERFKAVE 94 (575)
T ss_pred HHHHHHHH---HHHHHHHHHHHHHhhhcccccccH-HHHHHHHHHHHHHHHHHHHHH
Confidence 46777765 444444 44443322 23444 566777777776666555543
No 300
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=20.32 E-value=5.9e+02 Score=22.33 Aligned_cols=62 Identities=29% Similarity=0.341 Sum_probs=36.3
Q ss_pred HHHHHHHHHHhhhchHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHH
Q 009074 111 LKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQE 175 (544)
Q Consensus 111 lk~~r~Ei~kLqddnkaLerltksKEaALleAeR~v~~AlakA~~V~dlQN~N~EL~kQiEIcqE 175 (544)
+-...+.|..|..+|++....+++.+.++-+....++ .--.+|...|.+++++..|-|..++
T Consensus 20 l~~qs~~i~~L~a~n~~q~~tI~qq~~~~~~L~~~~~---~~r~~~~~~~~~~qq~r~~~e~~~e 81 (110)
T PF10828_consen 20 LWYQSQRIDRLRAENKAQAQTIQQQEDANQELKAQLQ---QNRQAVEEQQKREQQLRQQSEERRE 81 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445567888888888888888777766544432111 2223455555555555555554444
No 301
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=20.29 E-value=3.1e+02 Score=24.96 Aligned_cols=42 Identities=24% Similarity=0.320 Sum_probs=29.4
Q ss_pred chhhHHHHhhhhHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHHHHH
Q 009074 263 PVKQWLEERRFLQGEMQQLRDRLAITERTAKSEAQLKEKYHLRLKVLE 310 (544)
Q Consensus 263 PVKqWLEErR~LQGEmqrLrdKLAiaERtAkaEaQLKeK~~lRLk~LE 310 (544)
||...|++|+ +...+.|..|+....--.+++..|+.+|....
T Consensus 32 pi~~~l~~R~------~~I~~~l~~A~~~~~ea~~~~~e~e~~l~~A~ 73 (164)
T PRK14471 32 PILGAVKERE------DSIKNALASAEEARKEMQNLQADNERLLKEAR 73 (164)
T ss_pred HHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998 45556666666666666666777776666443
No 302
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=20.29 E-value=7.7e+02 Score=23.65 Aligned_cols=111 Identities=24% Similarity=0.337 Sum_probs=70.2
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHhHHHHH---HhhhHHHHHHHHHHHHHHHH
Q 009074 126 KALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKILDK---MHRQKVAEVEKLTQTVRELE 202 (544)
Q Consensus 126 kaLerltksKEaALleAeR~v~~AlakA~~V~dlQN~N~EL~kQiEIcqEEnkiLdk---~hRQKvaEVEKLtqTv~ELE 202 (544)
+.++.+-.||+ .|..++..-..=++.+++...+++.++...-++.--|++ -.|++.+||.+==..- -|
T Consensus 6 ~ti~~ie~sK~-------qIf~I~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~y--sE 76 (159)
T PF05384_consen 6 KTIDTIESSKE-------QIFEIAEQARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDRY--SE 76 (159)
T ss_pred HHHHHHHhHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc--CH
Confidence 34455555554 345556666666788899999999998888777766654 4566777776532211 24
Q ss_pred HHHHhchhhhhh----hHHHHHHHHHHHHHhhhHHHHHhhhhhhhhh
Q 009074 203 EAVLAGGAAANA----VRDYQRKVQEMNEERKTLDRELARAKVTANR 245 (544)
Q Consensus 203 EAvLaggaaaNA----vrdyqrq~~elneEkrtLerELARaKv~AnR 245 (544)
+-|-.+=..|+- +--++.+-..|...+..|||-|.+.+.+..|
T Consensus 77 ~dik~AYe~A~~lQ~~L~~~re~E~qLr~rRD~LErrl~~l~~tier 123 (159)
T PF05384_consen 77 EDIKEAYEEAHELQVRLAMLREREKQLRERRDELERRLRNLEETIER 123 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444443233333 3345667777777788888888777776665
No 303
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=20.28 E-value=9.7e+02 Score=27.27 Aligned_cols=89 Identities=20% Similarity=0.312 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhchhhhhhh
Q 009074 136 EAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEAVLAGGAAANAV 215 (544)
Q Consensus 136 EaALleAeR~v~~AlakA~~V~dlQN~N~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLtqTv~ELEEAvLaggaaaNAv 215 (544)
+..+-+.-..++.|..||.-..+ ..+.|.++++....+.+- ...|++.+.+.|.-|++-+..+ =
T Consensus 419 ~~RI~eLt~qlQ~adSKa~~f~~---Ec~aL~~rL~~aE~ek~~-------l~eeL~~a~~~i~~LqDEL~TT------r 482 (518)
T PF10212_consen 419 MSRIEELTSQLQHADSKAVHFYA---ECRALQKRLESAEKEKES-------LEEELKEANQNISRLQDELETT------R 482 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH------H
Confidence 33444444456666666554433 233344444444333222 3345666777777777766543 4
Q ss_pred HHHHHHHHHHHHHhhhHHHHHhhhh
Q 009074 216 RDYQRKVQEMNEERKTLDRELARAK 240 (544)
Q Consensus 216 rdyqrq~~elneEkrtLerELARaK 240 (544)
+.|..|++-|-|-.-.|...|+.-+
T Consensus 483 ~NYE~QLs~MSEHLasmNeqL~~Q~ 507 (518)
T PF10212_consen 483 RNYEEQLSMMSEHLASMNEQLAKQR 507 (518)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7799999999888888888876543
No 304
>PHA03253 UL35; Provisional
Probab=20.14 E-value=3.2e+02 Score=31.34 Aligned_cols=50 Identities=34% Similarity=0.347 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCccC
Q 009074 274 LQGEMQQLRDRLAITERTAKSEAQLKEKYHLRLKVLEESLRGSSNGSGRSTSDGRSISN 332 (544)
Q Consensus 274 LQGEmqrLrdKLAiaERtAkaEaQLKeK~~lRLk~LEe~lk~~~s~~~~~~~~~~~~s~ 332 (544)
|.-|||-| .|-+=...-.||-+-|+..=+.|.....-++..+++.+++|.
T Consensus 429 ~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (609)
T PHA03253 429 LEVEMQSL---------SAVVYGAVAQKYGLSLKQVIERLNVNEGRSSSRASPSHSTST 478 (609)
T ss_pred hhhhhhhh---------hHHHHHHHHHhcCCCHHHHHHHhccCCCcccCCCCCccCCCc
Confidence 44566665 355566677899999988888887655444444555555554
No 305
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=20.06 E-value=8.1e+02 Score=23.82 Aligned_cols=62 Identities=27% Similarity=0.453 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhHHHHhHHHHHHHHHHHHHHhhhccCCCCChhHHhhhccHHHHHHHHHHHHHhh
Q 009074 46 VEEKLKLAENLIETKNLEIKKINDEKRASMAAQFAAEATLRRVHAAQKDDDMPPIEAILAPLEAELKLARQEIAKLQ 122 (544)
Q Consensus 46 ~dEKLk~tE~lle~kNLEiKklndEKK~alAAQfAAEAtLRRvha~QKdddmppieaiiApLeaelk~~r~Ei~kLq 122 (544)
..+-+.-...++++..+-+..| .|--+|...+=+ +|.. -+++++.-||.+|...|.+|..+.
T Consensus 102 w~~al~na~a~lehq~~R~~NL------eLl~~~g~naW~--~~n~-------~Le~~~~~le~~l~~~k~~ie~vN 163 (221)
T PF05700_consen 102 WKEALDNAYAQLEHQRLRLENL------ELLSKYGENAWL--IHNE-------QLEAMLKRLEKELAKLKKEIEEVN 163 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHHHHHhHHHHH--HHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566666644433333 255667777653 4442 377788888888888887776553
No 306
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=20.01 E-value=5.7e+02 Score=31.02 Aligned_cols=15 Identities=27% Similarity=0.412 Sum_probs=10.3
Q ss_pred hHHHHHhhhhhhhhh
Q 009074 231 TLDRELARAKVTANR 245 (544)
Q Consensus 231 tLerELARaKv~AnR 245 (544)
..+..|..|-|.+.-
T Consensus 239 ~Id~~L~~aGW~~~~ 253 (1123)
T PRK11448 239 LIDQQLRKAGWEADS 253 (1123)
T ss_pred HHHHHHHHCCCCCCC
Confidence 567777777776653
Done!